Citrus Sinensis ID: 005240
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 706 | 2.2.26 [Sep-21-2011] | |||||||
| Q8VZF3 | 960 | Probable glutamyl endopep | yes | no | 0.990 | 0.728 | 0.675 | 0.0 | |
| Q10MJ1 | 938 | Probable glutamyl endopep | yes | no | 0.988 | 0.744 | 0.671 | 0.0 | |
| Q12884 | 760 | Seprase OS=Homo sapiens G | yes | no | 0.186 | 0.173 | 0.290 | 4e-06 | |
| P97321 | 761 | Seprase OS=Mus musculus G | yes | no | 0.189 | 0.176 | 0.263 | 4e-06 | |
| P14740 | 767 | Dipeptidyl peptidase 4 OS | no | no | 0.199 | 0.183 | 0.285 | 0.0001 | |
| P28843 | 760 | Dipeptidyl peptidase 4 OS | no | no | 0.199 | 0.185 | 0.285 | 0.0003 | |
| P81425 | 765 | Dipeptidyl peptidase 4 OS | no | no | 0.182 | 0.168 | 0.291 | 0.0007 |
| >sp|Q8VZF3|CGEP_ARATH Probable glutamyl endopeptidase, chloroplastic OS=Arabidopsis thaliana GN=GEP PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 1055 bits (2729), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 505/748 (67%), Positives = 595/748 (79%), Gaps = 49/748 (6%)
Query: 1 MPFFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSC 60
M F+TG+GIH+LLPD +L PEKE+ G PDG KINFV+WS DGK +AFS+RVDE N S
Sbjct: 174 MSFYTGLGIHQLLPDGTLSPEKEITGIPDGGKINFVTWSNDGKHLAFSIRVDENGN--SS 231
Query: 61 KLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPL 120
K VW+AD ETG A+PLF S DI LNA+F SFVW++NSTLL+ TIPSSR +PPKK +VP
Sbjct: 232 KPVVWVADVETGVARPLFNSQDIFLNAIFESFVWIDNSTLLVSTIPSSRGEPPKKPLVPS 291
Query: 121 GPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTPAVYTAV 180
GPK SNE K ++ R +LLKDEYD LFDYY ++QLVL SLDGT K+ G PAVYT++
Sbjct: 292 GPKTLSNETKTVVQVRTFQDLLKDEYDADLFDYYASSQLVLASLDGTVKEVGVPAVYTSL 351
Query: 181 EPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240
+PS D KY+L++S+HRPYS+ VPC RF +KV+VWTTDG+ VR+LCDLP AEDIP+ NSV
Sbjct: 352 DPSTDHKYLLVSSLHRPYSFIVPCGRFPKKVEVWTTDGRFVRQLCDLPLAEDIPIASNSV 411
Query: 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLR 300
R+GMRSI+WRADKPSTL W E QD GDA +EVSPRDI+Y Q AEP GE+PE+LHKLDLR
Sbjct: 412 RKGMRSINWRADKPSTL-WAETQDGGDAKMEVSPRDIVYMQSAEPLAGEEPEVLHKLDLR 470
Query: 301 FRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTR 360
+ +SWCDD+LALV E+WYKT +TRTW++ PGS DV+PR+LFDR E+VYSDPGS M+ R
Sbjct: 471 YGGISWCDDTLALVYESWYKTRRTRTWVISPGSNDVSPRILFDRSSEDVYSDPGSTMLRR 530
Query: 361 TSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFE 420
T GT VIAKIKKENDE Y+LLNG G TP+GN+PFLDLFDINTG+KERIWES++EKYFE
Sbjct: 531 TDAGTYVIAKIKKENDEGTYVLLNGSGATPQGNVPFLDLFDINTGNKERIWESDKEKYFE 590
Query: 421 TAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTLASL 480
T VAL+ Q E D+ + +LKILTSKESKTE TQY + WP +K QITNFPHPYP LASL
Sbjct: 591 TVVALMSDQKEGDLKMEELKILTSKESKTENTQYSLQLWPDRKVQQITNFPHPYPQLASL 650
Query: 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEF 540
QKEMI+YQRKDGV LTATLYLPPGYD SKDGPLPCLFW+YP ++KSKDAAGQVRGSPNEF
Sbjct: 651 QKEMIRYQRKDGVQLTATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEF 710
Query: 541 SGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVAD 600
+G+ TS+L++LARRFA+L+GP+IPIIGEGD+ NDR+VEQLV+SAEAAVEEVVRRGVAD
Sbjct: 711 AGIGSTSALLWLARRFAILSGPTIPIIGEGDEEANDRYVEQLVASAEAAVEEVVRRGVAD 770
Query: 601 PSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQAE----------- 649
S+IAVGGHSYGAFMTA+LLAHAPHLF CGIARSG+YN+TLTPFGFQ E
Sbjct: 771 RSKIAVGGHSYGAFMTANLLAHAPHLFACGIARSGAYNRTLTPFGFQNEDRTLWEATNVY 830
Query: 650 -----------------------------------RFFDALKGHGALSRLVLLPFEHHVY 674
RFF+ALKGHGAL RLV+LP E H Y
Sbjct: 831 VEMSPFMSANKIKKPILLIHGEEDNNPGTLTMQSDRFFNALKGHGALCRLVVLPHESHGY 890
Query: 675 AARENVMHVIWETDRWLQKYCLSNTSDG 702
+ARE++MHV+WETDRWLQKYC+ NTSD
Sbjct: 891 SARESIMHVLWETDRWLQKYCVPNTSDA 918
|
Serine-type protease active in vitro against the LHCII N-terminal. Cleaves its substrate on the carboxy-side of Glu residues. Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: - |
| >sp|Q10MJ1|CGEP_ORYSJ Probable glutamyl endopeptidase, chloroplastic OS=Oryza sativa subsp. japonica GN=GEP PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1047 bits (2708), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 501/746 (67%), Positives = 594/746 (79%), Gaps = 48/746 (6%)
Query: 1 MPFFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSC 60
M F+TGIGIH+L+ D +LGPEK VHGYP+GA+INFV+WS DG+ ++FSVRVDEEDN S
Sbjct: 155 MSFYTGIGIHKLMDDGTLGPEKVVHGYPEGARINFVTWSQDGRHLSFSVRVDEEDNTSG- 213
Query: 61 KLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPL 120
KLR+WIAD E+GEA+PLF+SP+I LNA+F SFVWVNNSTLL+ TIP SR PP+K VP
Sbjct: 214 KLRLWIADVESGEARPLFKSPEIYLNAIFDSFVWVNNSTLLVCTIPLSRGAPPQKPSVPS 273
Query: 121 GPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTPAVYTAV 180
GPKIQSNE N++ R +LLKDEYD LFDYY T+QLVL S DGT K G PAVYT++
Sbjct: 274 GPKIQSNETSNVVQVRTFQDLLKDEYDADLFDYYATSQLVLASFDGTVKPIGPPAVYTSI 333
Query: 181 EPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240
+PSPD KY++I+S+HRPYSY VPC RF +KV++WT DG+ +RELCDLP AEDIP+ +SV
Sbjct: 334 DPSPDDKYLMISSIHRPYSYIVPCGRFPKKVELWTVDGEFIRELCDLPLAEDIPIATSSV 393
Query: 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLR 300
R+G RSI WR DKP+ LYWVE QD GDA VEVSPRDI+Y + AEP GE+PEILHKLDLR
Sbjct: 394 RKGKRSIYWRPDKPAMLYWVETQDGGDAKVEVSPRDIVYMENAEPINGEQPEILHKLDLR 453
Query: 301 FRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTR 360
+ SWCD+SLALV E+WYKT +TRTW++ P KDV+PR+LFDR E+VYSDPGSPM+ R
Sbjct: 454 YAGTSWCDESLALVYESWYKTRKTRTWVISPDKKDVSPRILFDRSSEDVYSDPGSPMLRR 513
Query: 361 TSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFE 420
T+ GT VIAK+KK+ DE YILLNG G TPEGN+PFLDLFDINTGSKERIW+S++EKY+E
Sbjct: 514 TAMGTYVIAKVKKQ-DENTYILLNGMGATPEGNVPFLDLFDINTGSKERIWQSDKEKYYE 572
Query: 421 TAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTLASL 480
T VAL+ + + ++ L +LKILTSKESKTE TQY++ WP KK QIT+FPHPYP LASL
Sbjct: 573 TVVALMSDKTDGELPLEKLKILTSKESKTENTQYYLQIWPEKKQVQITDFPHPYPQLASL 632
Query: 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEF 540
KEMI+YQRKDGV LTATLYLPPGYD S+DGPLPCL W+YP ++KSKDAAGQVRGSPNEF
Sbjct: 633 YKEMIRYQRKDGVQLTATLYLPPGYDPSQDGPLPCLVWSYPGEFKSKDAAGQVRGSPNEF 692
Query: 541 SGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVAD 600
G+ TS L++LAR FA+L+GP+IPIIGEGD+ NDR+VEQLV+SAEAA EEVVRRGVA
Sbjct: 693 PGIGATSPLLWLARGFAILSGPTIPIIGEGDEEANDRYVEQLVTSAEAAAEEVVRRGVAH 752
Query: 601 PSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQAE----------- 649
P +IAVGGHSYGAFMTA+LLAHAPHLFCCGIARSG+YN+TLTPFGFQ E
Sbjct: 753 PDKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATNTY 812
Query: 650 -----------------------------------RFFDALKGHGALSRLVLLPFEHHVY 674
RFF+ALKGHGALSRLV+LPFE H Y
Sbjct: 813 VEMSPFMSANKIKKPILLIHGEQDNNSGTLTMQSDRFFNALKGHGALSRLVILPFESHGY 872
Query: 675 AARENVMHVIWETDRWLQKYCLSNTS 700
+ARE++MHV+WETDRWLQKYCLS +S
Sbjct: 873 SARESIMHVLWETDRWLQKYCLSGSS 898
|
Serine-type protease active in vitro against the LHCII N-terminal. Cleaves its substrate on the carboxy-side of Glu residues. Oryza sativa subsp. japonica (taxid: 39947) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|Q12884|SEPR_HUMAN Seprase OS=Homo sapiens GN=FAP PE=1 SV=5 | Back alignment and function description |
|---|
Score = 53.9 bits (128), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 67/165 (40%), Gaps = 33/165 (20%)
Query: 480 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNE 539
L KE IK D + L + LPP +D+SK PL QV G P
Sbjct: 503 LPKEEIKKLEVDEITLWYKMILPPQFDRSKKYPLLI----------------QVYGGP-- 544
Query: 540 FSGMTPTSSLIFLARRFAVLAGPSIPIIG---------EGDKLPNDRFVEQLVSSAE--- 587
+ + +F + LA +I +GDKL + + V E
Sbjct: 545 ---CSQSVRSVFAVNWISYLASKEGMVIALVDGRGTAFQGDKLLYAVYRKLGVYEVEDQI 601
Query: 588 AAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIA 632
AV + + G D RIA+ G SYG ++++ LA LF CGIA
Sbjct: 602 TAVRKFIEMGFIDEKRIAIWGWSYGGYVSSLALASGTGLFKCGIA 646
|
In association with DPP4 is involved in the pericellular proteolysis of the extracellular matrix (ECM), the migration and invasion of endothelial cells into the ECM. May have a role in tissue remodeling during development and wound healing, and may contribute to invasiveness in malignant cancers. Homo sapiens (taxid: 9606) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|P97321|SEPR_MOUSE Seprase OS=Mus musculus GN=Fap PE=2 SV=1 | Back alignment and function description |
|---|
Score = 53.9 bits (128), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 66/163 (40%), Gaps = 29/163 (17%)
Query: 480 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSP-- 537
L K IK + G+ + LPP +D+SK PL QV G P
Sbjct: 503 LPKVEIKKLKDGGLTFWYKMILPPQFDRSKKYPLLI----------------QVYGGPCS 546
Query: 538 NEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQL--------VSSAEAA 589
+ + + +LA + ++ + G G D+F+ + V A
Sbjct: 547 QSVKSVFAVNWITYLASKEGIVIAL---VDGRGTAFQGDKFLHAVYRKLGVYEVEDQLTA 603
Query: 590 VEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIA 632
V + + G D RIA+ G SYG ++++ LA LF CGIA
Sbjct: 604 VRKFIEMGFIDEERIAIWGWSYGGYVSSLALASGTGLFKCGIA 646
|
In association with DPP4 is involved in the pericellular proteolysis of the extracellular matrix (ECM), the migration and invasion of endothelial cells into the ECM (By similarity). May have a role in tissue remodeling during development and wound healing, and contribute to invasiveness in malignant cancers. Mus musculus (taxid: 10090) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|P14740|DPP4_RAT Dipeptidyl peptidase 4 OS=Rattus norvegicus GN=Dpp4 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 73/161 (45%), Gaps = 20/161 (12%)
Query: 480 LQKEMIKYQRKDGVPLTAT-----LYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVR 534
LQ + ++ D + L T + LPP +D+SK PL +A P K+ DAA ++
Sbjct: 505 LQDVQMPSKKLDFIVLNETRFWYQMILPPHFDKSKKYPLLIDVYAGPCSQKA-DAAFRL- 562
Query: 535 GSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLP---NDRFVEQLVSSAEAAVE 591
N + + T ++I A G +GDK+ N R V A
Sbjct: 563 ---NWATYLASTENIIV-----ASFDGRGSGY--QGDKIMHAINKRLGTLEVEDQIEAAR 612
Query: 592 EVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIA 632
+ ++ G D R+A+ G SYG ++T+ +L +F CGIA
Sbjct: 613 QFLKMGFVDSKRVAIWGWSYGGYVTSMVLGSGSGVFKCGIA 653
|
Cell surface glycoprotein receptor involved in the costimulatory signal essential for T-cell receptor (TCR)-mediated T-cell activation. Acts as a positive regulator of T-cell coactivation, by binding at least ADA, CAV1, IGF2R, and PTPRC. Its binding to CAV1 and CARD11 induces T-cell proliferation and NF-kappa-B activation in a T-cell receptor/CD3-dependent manner. Its interaction with ADA also regulates lymphocyte-epithelial cell adhesion. In association with FAP is involved in the pericellular proteolysis of the extracellular matrix (ECM), the migration and invasion of endothelial cells into the ECM. May be involved in the promotion of lymphatic endothelial cells adhesion, migration and tube formation. When overexpressed, enhanced cell proliferation, a process inhibited by GPC3. Acts also as a serine exopeptidase with a dipeptidyl peptidase activity that regulates various physiological processes by cleaving peptides in the circulation, including many chemokines, mitogenic growth factors, neuropeptides and peptide hormones (By similarity). Removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Rattus norvegicus (taxid: 10116) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 4 EC: . EC: 5 |
| >sp|P28843|DPP4_MOUSE Dipeptidyl peptidase 4 OS=Mus musculus GN=Dpp4 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 73/161 (45%), Gaps = 20/161 (12%)
Query: 480 LQKEMIKYQRKDGVPLTAT-----LYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVR 534
LQ + ++ D + L T + LPP +D+SK PL +A P K+ DA+ ++
Sbjct: 498 LQDVQMPSKKLDFIVLNETRFWYQMILPPHFDKSKKYPLLLDVYAGPCSQKA-DASFRL- 555
Query: 535 GSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLP---NDRFVEQLVSSAEAAVE 591
N + + T ++I A G +GDK+ N R V A
Sbjct: 556 ---NWATYLASTENIIV-----ASFDGRGSGY--QGDKIMHAINRRLGTLEVEDQIEAAR 605
Query: 592 EVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIA 632
+ V+ G D R+A+ G SYG ++T+ +L +F CGIA
Sbjct: 606 QFVKMGFVDSKRVAIWGWSYGGYVTSMVLGSGSGVFKCGIA 646
|
Cell surface glycoprotein receptor involved in the costimulatory signal essential for T-cell receptor (TCR)-mediated T-cell activation. Acts as a positive regulator of T-cell coactivation, by binding at least ADA, CAV1, IGF2R, and PTPRC. Its binding to CAV1 and CARD11 induces T-cell proliferation and NF-kappa-B activation in a T-cell receptor/CD3-dependent manner. Its interaction with ADA also regulates lymphocyte-epithelial cell adhesion. In association with FAP is involved in the pericellular proteolysis of the extracellular matrix (ECM), the migration and invasion of endothelial cells into the ECM. May be involved in the promotion of lymphatic endothelial cells adhesion, migration and tube formation. When overexpressed, enhanced cell proliferation, a process inhibited by GPC3. Acts also as a serine exopeptidase with a dipeptidyl peptidase activity that regulates various physiological processes by cleaving peptides in the circulation, including many chemokines, mitogenic growth factors, neuropeptides and peptide hormones. Removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Mus musculus (taxid: 10090) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 4 EC: . EC: 5 |
| >sp|P81425|DPP4_BOVIN Dipeptidyl peptidase 4 OS=Bos taurus GN=DPP4 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 46.6 bits (109), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 63/144 (43%), Gaps = 15/144 (10%)
Query: 492 GVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIF 551
G + LPP +D+SK PL +A P K+ DA ++ N + + T ++I
Sbjct: 520 GTKFWYQMILPPHFDKSKKYPLLLEVYAGPCSQKA-DAIFRL----NWATYLASTENIIV 574
Query: 552 LARRFAVLAGPSIPIIGEGDKLP---NDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGG 608
A G +GDK+ N R V A + + G D RIA+ G
Sbjct: 575 -----ASFDGRGSGY--QGDKIMHAINRRLGTFEVEDQIEATRQFSKMGFVDDKRIAIWG 627
Query: 609 HSYGAFMTAHLLAHAPHLFCCGIA 632
SYG ++T+ +L +F CGIA
Sbjct: 628 WSYGGYVTSMVLGAGSGVFKCGIA 651
|
Cell surface glycoprotein receptor involved in the costimulatory signal essential for T-cell receptor (TCR)-mediated T-cell activation. Acts as a positive regulator of T-cell coactivation, by binding at least ADA, CAV1, IGF2R, and PTPRC. Its binding to CAV1 and CARD11 induces T-cell proliferation and NF-kappa-B activation in a T-cell receptor/CD3-dependent manner. Its interaction with ADA also regulates lymphocyte-epithelial cell adhesion. In association with FAP is involved in the pericellular proteolysis of the extracellular matrix (ECM), the migration and invasion of endothelial cells into the ECM. May be involved in the promotion of lymphatic endothelial cells adhesion, migration and tube formation. When overexpressed, enhanced cell proliferation, a process inhibited by GPC3. Acts also as a serine exopeptidase with a dipeptidyl peptidase activity that regulates various physiological processes by cleaving peptides in the circulation, including many chemokines, mitogenic growth factors, neuropeptides and peptide hormones. Removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Bos taurus (taxid: 9913) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 4 EC: . EC: 5 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 706 | ||||||
| 297743980 | 913 | unnamed protein product [Vitis vinifera] | 0.991 | 0.766 | 0.704 | 0.0 | |
| 359479944 | 961 | PREDICTED: probable glutamyl endopeptida | 0.990 | 0.727 | 0.702 | 0.0 | |
| 224130988 | 967 | predicted protein [Populus trichocarpa] | 0.992 | 0.724 | 0.696 | 0.0 | |
| 224064539 | 905 | predicted protein [Populus trichocarpa] | 0.987 | 0.770 | 0.691 | 0.0 | |
| 449436423 | 970 | PREDICTED: probable glutamyl endopeptida | 0.991 | 0.721 | 0.689 | 0.0 | |
| 449436421 | 971 | PREDICTED: probable glutamyl endopeptida | 0.991 | 0.720 | 0.689 | 0.0 | |
| 357511363 | 962 | Acylamino-acid-releasing enzyme [Medicag | 0.992 | 0.728 | 0.679 | 0.0 | |
| 30690669 | 961 | prolyl oligopeptidase-like protein [Arab | 0.991 | 0.728 | 0.676 | 0.0 | |
| 297828471 | 962 | serine-type peptidase [Arabidopsis lyrat | 0.991 | 0.727 | 0.675 | 0.0 | |
| 332278170 | 960 | RecName: Full=Probable glutamyl endopept | 0.990 | 0.728 | 0.675 | 0.0 |
| >gi|297743980|emb|CBI36950.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1108 bits (2865), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 526/747 (70%), Positives = 620/747 (82%), Gaps = 47/747 (6%)
Query: 1 MPFFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSC 60
M F+T IGIH+L+PD +LGPEKEVHG+PDGAKINFVSWS +G+ ++FS+RVDEE+N SS
Sbjct: 109 MSFYTSIGIHQLMPDGTLGPEKEVHGFPDGAKINFVSWSLNGQHLSFSIRVDEEEN-SSS 167
Query: 61 KLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPL 120
KLR+W+AD ETG+A+PLF+SPDI LNAVF +FVWV++STLL+ TIP SR DPPKK +VP
Sbjct: 168 KLRIWVADVETGKARPLFQSPDIHLNAVFDNFVWVDDSTLLVCTIPLSRGDPPKKPLVPS 227
Query: 121 GPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTPAVYTAV 180
GPK+QSNEQKN++ R +LLKDEYD LFDYY T QLVL SLDGT K+ G PAVYT++
Sbjct: 228 GPKVQSNEQKNVVQVRTFQDLLKDEYDADLFDYYATTQLVLASLDGTMKEIGPPAVYTSM 287
Query: 181 EPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240
+PSPDQKY+LI+S+HRPYS+ VPC RF +KV +WT++GK VRELCDLP AEDIP+ +NSV
Sbjct: 288 DPSPDQKYLLISSIHRPYSFIVPCGRFPKKVDLWTSEGKFVRELCDLPLAEDIPIAFNSV 347
Query: 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLR 300
R+GMRSI+WRADKPSTLYWVE QD GDA VEVSPRDI+Y QPAEP +GE+ ILHKLDLR
Sbjct: 348 RKGMRSINWRADKPSTLYWVETQDEGDAKVEVSPRDIVYMQPAEPLDGEQQAILHKLDLR 407
Query: 301 FRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTR 360
+ +SWCDDSLALV E+WYKT +TRTW++ PGS+DV+PR+LFDR E+VYSDPGSPM+ R
Sbjct: 408 YGGISWCDDSLALVYESWYKTRRTRTWVISPGSEDVSPRILFDRSSEDVYSDPGSPMLRR 467
Query: 361 TSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFE 420
T+ GT VIAKIKKENDE YILLNG G TPEGNIPFLDLFDINTGSKERIWES++EKY+E
Sbjct: 468 TTAGTYVIAKIKKENDEGTYILLNGSGATPEGNIPFLDLFDINTGSKERIWESDKEKYYE 527
Query: 421 TAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTLASL 480
T VAL+ Q E D+ LNQLKILTSKESKTE TQY I SW KK+ QITNFPHPYP LASL
Sbjct: 528 TVVALMSDQSEGDLYLNQLKILTSKESKTENTQYFIQSWLDKKACQITNFPHPYPQLASL 587
Query: 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEF 540
QKEMI+Y+RKDGV LTATLYLPPGYD SKDGPLPCL W+YP ++KSKDAAGQVRGSPNEF
Sbjct: 588 QKEMIRYERKDGVQLTATLYLPPGYDPSKDGPLPCLVWSYPGEFKSKDAAGQVRGSPNEF 647
Query: 541 SGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVAD 600
+G+ PTS+L++LARRFA+L+GP+IPIIGEG++ NDR+VEQLV+SAEAAVEEV+RRGVA
Sbjct: 648 AGIGPTSALLWLARRFAILSGPTIPIIGEGNEEANDRYVEQLVASAEAAVEEVIRRGVAH 707
Query: 601 PSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQAE----------- 649
P++IAVGGHSYGAFMTA+LLAHAPHLFCCGIARSG+YN+TLTPFGFQ E
Sbjct: 708 PNKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATDTY 767
Query: 650 -----------------------------------RFFDALKGHGALSRLVLLPFEHHVY 674
RFF+ALKGHGAL RLV+LPFE H Y
Sbjct: 768 VEMSPFMSANKIKRPVLLIHGEEDNNPGTLTMQSDRFFNALKGHGALCRLVILPFESHGY 827
Query: 675 AARENVMHVIWETDRWLQKYCLSNTSD 701
AARE++MHV+WETDRWLQK+C+SNT++
Sbjct: 828 AARESIMHVLWETDRWLQKHCVSNTTN 854
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359479944|ref|XP_002270510.2| PREDICTED: probable glutamyl endopeptidase, chloroplastic-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1106 bits (2860), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 525/747 (70%), Positives = 619/747 (82%), Gaps = 48/747 (6%)
Query: 1 MPFFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSC 60
M F+T IGIH+L+PD +LGPEKEVHG+PDGAKINFVSWS +G+ ++FS+RVDEE+ SS
Sbjct: 167 MSFYTSIGIHQLMPDGTLGPEKEVHGFPDGAKINFVSWSLNGQHLSFSIRVDEEN--SSS 224
Query: 61 KLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPL 120
KLR+W+AD ETG+A+PLF+SPDI LNAVF +FVWV++STLL+ TIP SR DPPKK +VP
Sbjct: 225 KLRIWVADVETGKARPLFQSPDIHLNAVFDNFVWVDDSTLLVCTIPLSRGDPPKKPLVPS 284
Query: 121 GPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTPAVYTAV 180
GPK+QSNEQKN++ R +LLKDEYD LFDYY T QLVL SLDGT K+ G PAVYT++
Sbjct: 285 GPKVQSNEQKNVVQVRTFQDLLKDEYDADLFDYYATTQLVLASLDGTMKEIGPPAVYTSM 344
Query: 181 EPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240
+PSPDQKY+LI+S+HRPYS+ VPC RF +KV +WT++GK VRELCDLP AEDIP+ +NSV
Sbjct: 345 DPSPDQKYLLISSIHRPYSFIVPCGRFPKKVDLWTSEGKFVRELCDLPLAEDIPIAFNSV 404
Query: 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLR 300
R+GMRSI+WRADKPSTLYWVE QD GDA VEVSPRDI+Y QPAEP +GE+ ILHKLDLR
Sbjct: 405 RKGMRSINWRADKPSTLYWVETQDEGDAKVEVSPRDIVYMQPAEPLDGEQQAILHKLDLR 464
Query: 301 FRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTR 360
+ +SWCDDSLALV E+WYKT +TRTW++ PGS+DV+PR+LFDR E+VYSDPGSPM+ R
Sbjct: 465 YGGISWCDDSLALVYESWYKTRRTRTWVISPGSEDVSPRILFDRSSEDVYSDPGSPMLRR 524
Query: 361 TSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFE 420
T+ GT VIAKIKKENDE YILLNG G TPEGNIPFLDLFDINTGSKERIWES++EKY+E
Sbjct: 525 TTAGTYVIAKIKKENDEGTYILLNGSGATPEGNIPFLDLFDINTGSKERIWESDKEKYYE 584
Query: 421 TAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTLASL 480
T VAL+ Q E D+ LNQLKILTSKESKTE TQY I SW KK+ QITNFPHPYP LASL
Sbjct: 585 TVVALMSDQSEGDLYLNQLKILTSKESKTENTQYFIQSWLDKKACQITNFPHPYPQLASL 644
Query: 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEF 540
QKEMI+Y+RKDGV LTATLYLPPGYD SKDGPLPCL W+YP ++KSKDAAGQVRGSPNEF
Sbjct: 645 QKEMIRYERKDGVQLTATLYLPPGYDPSKDGPLPCLVWSYPGEFKSKDAAGQVRGSPNEF 704
Query: 541 SGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVAD 600
+G+ PTS+L++LARRFA+L+GP+IPIIGEG++ NDR+VEQLV+SAEAAVEEV+RRGVA
Sbjct: 705 AGIGPTSALLWLARRFAILSGPTIPIIGEGNEEANDRYVEQLVASAEAAVEEVIRRGVAH 764
Query: 601 PSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQAE----------- 649
P++IAVGGHSYGAFMTA+LLAHAPHLFCCGIARSG+YN+TLTPFGFQ E
Sbjct: 765 PNKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATDTY 824
Query: 650 -----------------------------------RFFDALKGHGALSRLVLLPFEHHVY 674
RFF+ALKGHGAL RLV+LPFE H Y
Sbjct: 825 VEMSPFMSANKIKRPVLLIHGEEDNNPGTLTMQSDRFFNALKGHGALCRLVILPFESHGY 884
Query: 675 AARENVMHVIWETDRWLQKYCLSNTSD 701
AARE++MHV+WETDRWLQK+C+SNT++
Sbjct: 885 AARESIMHVLWETDRWLQKHCVSNTTN 911
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224130988|ref|XP_002320974.1| predicted protein [Populus trichocarpa] gi|222861747|gb|EEE99289.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1085 bits (2805), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 528/758 (69%), Positives = 615/758 (81%), Gaps = 57/758 (7%)
Query: 1 MPFFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSC 60
M F+TGIGIH+L+PD LGPE+E+HGYPDGAKINFV+WS DG+ +AFS+R DEEDN SS
Sbjct: 162 MSFYTGIGIHQLMPDGILGPEREIHGYPDGAKINFVTWSLDGRHLAFSIRFDEEDN-SSS 220
Query: 61 KLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPL 120
KLRVW+A+ ETG+A+PLF+SP++ LNAVF +FVWV+NSTLL+ IPSSR D PKK +VP
Sbjct: 221 KLRVWVANVETGQARPLFQSPNVYLNAVFDTFVWVDNSTLLVCAIPSSRGDLPKKPLVPS 280
Query: 121 GPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTPAVYTAV 180
GPKIQSNEQKN+I R +LLKDEYDE LFDYY T+QLVL SLDGT K+ G PAVYT++
Sbjct: 281 GPKIQSNEQKNVIQVRTFQDLLKDEYDEDLFDYYATSQLVLASLDGTTKEIGNPAVYTSM 340
Query: 181 EPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240
+PSPDQKY+L++S+HRPYS+ VPC RF +KV+VWTTDGK VRE+CDLP AEDIP+ +SV
Sbjct: 341 DPSPDQKYLLVSSIHRPYSFTVPCGRFPKKVEVWTTDGKFVREVCDLPLAEDIPIAISSV 400
Query: 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLR 300
R+GMR+I+WRADKPSTLYW E QD GDA VEVSPRDIIYTQPAEP EGE+PEILHKLDLR
Sbjct: 401 RKGMRNINWRADKPSTLYWAETQDGGDAKVEVSPRDIIYTQPAEPLEGEQPEILHKLDLR 460
Query: 301 FRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTR 360
+ +SWCDDSLALV E+WYKT +TRTW++ P SKDV+PR+LFDR E+VYSDPGSPM+ R
Sbjct: 461 YGGISWCDDSLALVYESWYKTRRTRTWVISPCSKDVSPRILFDRSSEDVYSDPGSPMLRR 520
Query: 361 TSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFE 420
T GT VIAKIKKENDE YILLNG G T EGNIPFLDLFDIN GSKERIWES +EKY+E
Sbjct: 521 TPAGTYVIAKIKKENDEGTYILLNGSGATSEGNIPFLDLFDINAGSKERIWESEKEKYYE 580
Query: 421 TAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTLASL 480
T V+L+ E D+ L++LK+LTSKESKTE TQY I WP KK QITNFPHPYP LASL
Sbjct: 581 TVVSLMSDYEEGDLLLDRLKLLTSKESKTENTQYSIKKWPEKKVCQITNFPHPYPQLASL 640
Query: 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEF 540
QKEMIKYQR DGV LTATLYLPPGYD SKDGPLPCLFW+YP ++KSKDAAGQVRGSPNEF
Sbjct: 641 QKEMIKYQRNDGVQLTATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEF 700
Query: 541 SGMTPTSSLIFLARR----------FAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAV 590
+G+ PTS+L++LARR FA+L+GP+IPIIGEGDK NDR+VEQLV+SAEAAV
Sbjct: 701 AGIGPTSALLWLARRHEFFPPFLVMFAILSGPTIPIIGEGDKEANDRYVEQLVASAEAAV 760
Query: 591 EEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQAE- 649
EEV+RRGVA P++IAVGGHSYGAFMTA+LLAHAPHLFCCGIARSG+YN+TLTPFGFQ E
Sbjct: 761 EEVIRRGVAHPNKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNED 820
Query: 650 ---------------------------------------------RFFDALKGHGALSRL 664
RFF+ALKGHGAL RL
Sbjct: 821 RTLWEATGTYVEMSPFMSANKIKKPILLIHGEEDNNSGTLTMQSDRFFNALKGHGALCRL 880
Query: 665 VLLPFEHHVYAARENVMHVIWETDRWLQKYCLSNTSDG 702
V+LPFE H YAARE+++HV+WETDRWLQK+C+SN+SD
Sbjct: 881 VILPFESHGYAARESILHVLWETDRWLQKHCVSNSSDA 918
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224064539|ref|XP_002301512.1| predicted protein [Populus trichocarpa] gi|222843238|gb|EEE80785.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1079 bits (2791), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 517/748 (69%), Positives = 609/748 (81%), Gaps = 51/748 (6%)
Query: 1 MPFFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSC 60
M F+TGIGIH+L+PD +LGPEKEVHGYPDGAKINFV+WS DG+ +AFS+RV EEDN SS
Sbjct: 107 MSFYTGIGIHQLMPDGTLGPEKEVHGYPDGAKINFVTWSLDGRHLAFSIRVFEEDN-SSS 165
Query: 61 KLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPL 120
KLRVW+A+ ETG+A+PLF+SPD+ LNAVF +FVWV+NS+LL+ TIPSSR DPPKK VP
Sbjct: 166 KLRVWVANMETGQARPLFQSPDVYLNAVFDNFVWVDNSSLLVCTIPSSRGDPPKKPSVPS 225
Query: 121 GPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTPAVYTAV 180
GPKIQSNEQKN++ R +LLKDEYDE LFDYYTT+Q+VL SLDGTAK+ G PAVYT++
Sbjct: 226 GPKIQSNEQKNVVQVRTFQDLLKDEYDEDLFDYYTTSQIVLASLDGTAKEVGPPAVYTSM 285
Query: 181 EPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240
+PSPDQ Y+LI+S+HRPYS+ VP RF +KV+VWTTDGK VRELCDLP AEDIP+ +SV
Sbjct: 286 DPSPDQNYLLISSIHRPYSFIVPRGRFPKKVEVWTTDGKFVRELCDLPLAEDIPIATSSV 345
Query: 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLR 300
R+G R+I+WRADKPSTLYW E QD GDA VEVSPRDI+YTQPAEP EGE+PEILHKLDLR
Sbjct: 346 RKGKRAINWRADKPSTLYWAETQDGGDAKVEVSPRDIVYTQPAEPLEGEQPEILHKLDLR 405
Query: 301 FRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTR 360
+ + WCDDSLALV E+WYKT +TRTW++ PGSKD +PR+LFDR E+VYSDPGSPM+ R
Sbjct: 406 YGGIYWCDDSLALVYESWYKTRRTRTWVISPGSKDASPRILFDRSSEDVYSDPGSPMLRR 465
Query: 361 TSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFE 420
T GT VIAKIKKENDE Y+LL G G TPEGNIPFLDLFDINTGSKERIWES++E+Y+E
Sbjct: 466 TPAGTYVIAKIKKENDEGTYVLLKGSGATPEGNIPFLDLFDINTGSKERIWESDKERYYE 525
Query: 421 TAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTLASL 480
T VAL+ E D+ L++L+ILTSKESKTE QY I WP KK+ QITNFPHPYP LASL
Sbjct: 526 TVVALMLDYEEGDLLLDRLQILTSKESKTENRQYFIQKWPEKKACQITNFPHPYPQLASL 585
Query: 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEF 540
QKEMI+YQRKDGV LTATLYLPPGYD SKDGPLPCL W+YP ++KSKDAAGQVRGSPN+F
Sbjct: 586 QKEMIRYQRKDGVQLTATLYLPPGYDSSKDGPLPCLVWSYPGEFKSKDAAGQVRGSPNKF 645
Query: 541 SGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVAD 600
+G+ TS+L++ FA+L+GP+IPIIGEGD+ NDR+VEQLV+S EAAVEEV++RGVA
Sbjct: 646 AGIGSTSALLW----FAILSGPTIPIIGEGDEEANDRYVEQLVASVEAAVEEVIQRGVAH 701
Query: 601 PSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQAE----------- 649
P++IAVGGHSYGAFMTA+LLAHAPHLFCCGIARSG+YN+TLTPFGFQ E
Sbjct: 702 PNKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQHEDRTLWEATTTY 761
Query: 650 -----------------------------------RFFDALKGHGALSRLVLLPFEHHVY 674
RFF+ALKGHGAL RLV+LPFE H Y
Sbjct: 762 VEMSPFMSANKIKKPILLIHGEEDNNSGTLNMQSDRFFNALKGHGALCRLVILPFESHGY 821
Query: 675 AARENVMHVIWETDRWLQKYCLSNTSDG 702
AARE++MHV+WETDRWLQK+C+ N +D
Sbjct: 822 AARESIMHVLWETDRWLQKHCVQNPTDA 849
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449436423|ref|XP_004135992.1| PREDICTED: probable glutamyl endopeptidase, chloroplastic-like isoform 2 [Cucumis sativus] gi|449507837|ref|XP_004163143.1| PREDICTED: probable glutamyl endopeptidase, chloroplastic-like isoform 2 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1078 bits (2788), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 517/750 (68%), Positives = 614/750 (81%), Gaps = 50/750 (6%)
Query: 1 MPFFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSC 60
+ F+TGIGIH+L+PDDSLGPEKEV G P+GAKINFV+WSPDG+ +AF+VRVDE+D SS
Sbjct: 173 ISFYTGIGIHQLMPDDSLGPEKEVRGLPNGAKINFVTWSPDGRHLAFTVRVDEDDG-SSS 231
Query: 61 KLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPL 120
KLRVW+AD ETGEA+PLF++ DI +NAVF +FVWVN+STLL+ TIP SR DPPKK +VP
Sbjct: 232 KLRVWVADVETGEARPLFQNTDIYVNAVFDNFVWVNDSTLLVCTIPFSRGDPPKKPLVPP 291
Query: 121 GPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGT--PAVY 177
GPK+QSNEQKNII +R +LLKDEYD+ LFDYY T+QLVLGSL DGT K+FGT PAVY
Sbjct: 292 GPKVQSNEQKNIIQARTYQDLLKDEYDKDLFDYYATSQLVLGSLEDGTVKEFGTSPPAVY 351
Query: 178 TAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCY 237
T+++PSPD KY+LI+++HRPYS+ VPC RF +V VWTTDGK VR+LCDLP AEDIP+ +
Sbjct: 352 TSLDPSPDHKYILISTIHRPYSFIVPCGRFPNRVAVWTTDGKFVRDLCDLPLAEDIPIAF 411
Query: 238 NSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL 297
NSVR+G RSI+WRADKPSTLYWVE QD GDA VEVSPRDI+YT+ AEP E E+PEILHKL
Sbjct: 412 NSVRKGKRSINWRADKPSTLYWVETQDGGDARVEVSPRDIVYTESAEPLESEQPEILHKL 471
Query: 298 DLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPM 357
DLR+ +SWCDDSLALV E+WYKT + RTW++ PGSK+ R+LFDR E+VYSDPGSPM
Sbjct: 472 DLRYGGISWCDDSLALVYESWYKTRKIRTWVISPGSKEDNARLLFDRSSEDVYSDPGSPM 531
Query: 358 MTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREK 417
+ RT GT VIAK+KKEN + Y+LLNGRG TPEGNIPF+DLFDINTGSKERIW+S+RE
Sbjct: 532 VRRTPFGTYVIAKLKKENYDGTYVLLNGRGATPEGNIPFIDLFDINTGSKERIWKSDRET 591
Query: 418 YFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTL 477
Y+E+ VAL+ Q E D+N+N+LK LTSKESKTE TQY+IL WP K +SQIT FPHPYP L
Sbjct: 592 YYESVVALMSDQKEGDLNINELKFLTSKESKTENTQYYILRWPGKTASQITKFPHPYPQL 651
Query: 478 ASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSP 537
ASLQKEMI+Y+RKDGV LTATLYLPP YD +KDGPLPCL W+YP ++KSKDAAGQVRGSP
Sbjct: 652 ASLQKEMIRYERKDGVQLTATLYLPPNYDPAKDGPLPCLIWSYPGEFKSKDAAGQVRGSP 711
Query: 538 NEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRG 597
NEF+G+ PTS+L++LARRFA+LAGP+IPIIGEG++ NDR+VEQLV SAEAAV+EV++RG
Sbjct: 712 NEFAGIGPTSALLWLARRFAILAGPTIPIIGEGNEEANDRYVEQLVGSAEAAVQEVIKRG 771
Query: 598 VADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQAE-------- 649
VA PS+IAVGGHSYGAFMTA+LLAHAPHLFCCGIARSG+YN+TLTPFGFQ E
Sbjct: 772 VAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEAT 831
Query: 650 --------------------------------------RFFDALKGHGALSRLVLLPFEH 671
RFF+ALKGHGAL RLV+LPFE
Sbjct: 832 STYVEMSPFISANKIKKPILLIHGEEDNNPGTLPMQSDRFFNALKGHGALCRLVVLPFES 891
Query: 672 HVYAARENVMHVIWETDRWLQKYCLSNTSD 701
H Y++RE++MHV+WETDRWL+KYC SN SD
Sbjct: 892 HGYSSRESIMHVLWETDRWLEKYCSSNASD 921
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449436421|ref|XP_004135991.1| PREDICTED: probable glutamyl endopeptidase, chloroplastic-like isoform 1 [Cucumis sativus] gi|449507834|ref|XP_004163142.1| PREDICTED: probable glutamyl endopeptidase, chloroplastic-like isoform 1 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1077 bits (2786), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 517/750 (68%), Positives = 614/750 (81%), Gaps = 50/750 (6%)
Query: 1 MPFFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSC 60
+ F+TGIGIH+L+PDDSLGPEKEV G P+GAKINFV+WSPDG+ +AF+VRVDE+D SS
Sbjct: 173 ISFYTGIGIHQLMPDDSLGPEKEVRGLPNGAKINFVTWSPDGRHLAFTVRVDEDDG-SSS 231
Query: 61 KLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPL 120
KLRVW+AD ETGEA+PLF++ DI +NAVF +FVWVN+STLL+ TIP SR DPPKK +VP
Sbjct: 232 KLRVWVADVETGEARPLFQNTDIYVNAVFDNFVWVNDSTLLVCTIPFSRGDPPKKPLVPP 291
Query: 121 GPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGT--PAVY 177
GPK+QSNEQKNII +R +LLKDEYD+ LFDYY T+QLVLGSL DGT K+FGT PAVY
Sbjct: 292 GPKVQSNEQKNIIQARTYQDLLKDEYDKDLFDYYATSQLVLGSLEDGTVKEFGTSPPAVY 351
Query: 178 TAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCY 237
T+++PSPD KY+LI+++HRPYS+ VPC RF +V VWTTDGK VR+LCDLP AEDIP+ +
Sbjct: 352 TSLDPSPDHKYILISTIHRPYSFIVPCGRFPNRVAVWTTDGKFVRDLCDLPLAEDIPIAF 411
Query: 238 NSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL 297
NSVR+G RSI+WRADKPSTLYWVE QD GDA VEVSPRDI+YT+ AEP E E+PEILHKL
Sbjct: 412 NSVRKGKRSINWRADKPSTLYWVETQDGGDARVEVSPRDIVYTESAEPLESEQPEILHKL 471
Query: 298 DLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPM 357
DLR+ +SWCDDSLALV E+WYKT + RTW++ PGSK+ R+LFDR E+VYSDPGSPM
Sbjct: 472 DLRYGGISWCDDSLALVYESWYKTRKIRTWVISPGSKEDNARLLFDRSSEDVYSDPGSPM 531
Query: 358 MTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREK 417
+ RT GT VIAK+KKEN + Y+LLNGRG TPEGNIPF+DLFDINTGSKERIW+S+RE
Sbjct: 532 VRRTPFGTYVIAKLKKENYDGTYVLLNGRGATPEGNIPFIDLFDINTGSKERIWKSDRET 591
Query: 418 YFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTL 477
Y+E+ VAL+ Q E D+N+N+LK LTSKESKTE TQY+IL WP K +SQIT FPHPYP L
Sbjct: 592 YYESVVALMSDQKEGDLNINELKFLTSKESKTENTQYYILRWPGKTASQITKFPHPYPQL 651
Query: 478 ASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSP 537
ASLQKEMI+Y+RKDGV LTATLYLPP YD +KDGPLPCL W+YP ++KSKDAAGQVRGSP
Sbjct: 652 ASLQKEMIRYERKDGVQLTATLYLPPNYDPAKDGPLPCLIWSYPGEFKSKDAAGQVRGSP 711
Query: 538 NEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRG 597
NEF+G+ PTS+L++LARRFA+LAGP+IPIIGEG++ NDR+VEQLV SAEAAV+EV++RG
Sbjct: 712 NEFAGIGPTSALLWLARRFAILAGPTIPIIGEGNEEANDRYVEQLVGSAEAAVQEVIKRG 771
Query: 598 VADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQAE-------- 649
VA PS+IAVGGHSYGAFMTA+LLAHAPHLFCCGIARSG+YN+TLTPFGFQ E
Sbjct: 772 VAHPSKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEAT 831
Query: 650 --------------------------------------RFFDALKGHGALSRLVLLPFEH 671
RFF+ALKGHGAL RLV+LPFE
Sbjct: 832 STYVEMSPFISANKIKKPILLIHGEEDNNPGTLPMQSDRFFNALKGHGALCRLVVLPFES 891
Query: 672 HVYAARENVMHVIWETDRWLQKYCLSNTSD 701
H Y++RE++MHV+WETDRWL+KYC SN SD
Sbjct: 892 HGYSSRESIMHVLWETDRWLEKYCSSNASD 921
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357511363|ref|XP_003625970.1| Acylamino-acid-releasing enzyme [Medicago truncatula] gi|355500985|gb|AES82188.1| Acylamino-acid-releasing enzyme [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1077 bits (2784), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 508/748 (67%), Positives = 607/748 (81%), Gaps = 47/748 (6%)
Query: 1 MPFFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSC 60
M F+TG+GIH +LPD +LGPE E+HG+P+GAKINFV+WSPD + ++FS+RV+EED+ +S
Sbjct: 165 MSFYTGLGIHEILPDGTLGPEVEIHGFPEGAKINFVTWSPDARHLSFSIRVNEEDSNTS- 223
Query: 61 KLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPL 120
KL VW+AD ETG+A+PLF+SPD+ LNAVF ++VWV+NSTLL+ TIPS+R PPKK +VP
Sbjct: 224 KLSVWVADVETGKARPLFQSPDVYLNAVFENYVWVDNSTLLVCTIPSTRGAPPKKPLVPG 283
Query: 121 GPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTPAVYTAV 180
GPKIQSNEQKNII R +LLKDEYDE LFDYY T+QLVL SLDGT KDFG PA+YT++
Sbjct: 284 GPKIQSNEQKNIIQVRTFQDLLKDEYDEDLFDYYATSQLVLASLDGTTKDFGPPAIYTSL 343
Query: 181 EPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240
+PSPD+KY++I SMHRPYS+ VPC RF +KV++W+ DGK VRE+CDLP AEDIP+ NSV
Sbjct: 344 DPSPDEKYIMIDSMHRPYSFIVPCGRFPKKVELWSADGKFVREICDLPLAEDIPITSNSV 403
Query: 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLR 300
R+GMRSI+WRADKPSTLYWVE QD GDA VEVSPRDIIY+QPAE EGE+P ILHKLDLR
Sbjct: 404 RKGMRSINWRADKPSTLYWVETQDGGDAKVEVSPRDIIYSQPAEALEGEQPVILHKLDLR 463
Query: 301 FRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTR 360
+ +SWCDDSLA V E+WYKT + +TW+V PGS+DV PR+LFDR E+VYSDPGSPM+ R
Sbjct: 464 YGGISWCDDSLAFVYESWYKTRRIKTWVVSPGSEDVTPRILFDRSSEDVYSDPGSPMLRR 523
Query: 361 TSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFE 420
T GT +IAKIKK DE YI+LNG G TPEGN+PFLDLFDINTGSKERIWES++EKYFE
Sbjct: 524 TQAGTYIIAKIKKGGDEGRYIILNGSGATPEGNVPFLDLFDINTGSKERIWESDKEKYFE 583
Query: 421 TAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTLASL 480
T VAL+ Q E D+ L++LKIL SKESKTE TQY+ +SWP KK Q+TNFPHPYP LASL
Sbjct: 584 TVVALMSDQEEGDLQLDRLKILASKESKTENTQYNFISWPDKKIVQVTNFPHPYPQLASL 643
Query: 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEF 540
QKEMI+Y+RKDGV LTATLYLPPGY+ S DGPLPCL W+YP ++KSKDAA QVRGSPNEF
Sbjct: 644 QKEMIRYKRKDGVQLTATLYLPPGYNPSTDGPLPCLVWSYPGEFKSKDAASQVRGSPNEF 703
Query: 541 SGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVAD 600
+G+ TS+L++LA+RFA+L+GP+IPIIGEG+ ND +VEQLV+SAEAAVEEV+RRGVA
Sbjct: 704 AGIGSTSALLWLAKRFAILSGPTIPIIGEGEVEANDSYVEQLVASAEAAVEEVIRRGVAH 763
Query: 601 PSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQAE----------- 649
P +IAVGGHSYGAFMTA+LLAHAPHLFCCGIARSG+YN+TLTPFGFQ E
Sbjct: 764 PKKIAVGGHSYGAFMTANLLAHAPHLFCCGIARSGAYNRTLTPFGFQNEDRTLWEATNTY 823
Query: 650 -----------------------------------RFFDALKGHGALSRLVLLPFEHHVY 674
RFF+ALKGHGALSRLV+LP+E H Y
Sbjct: 824 VEMSPFMSANKIKKPILLIHGEEDNNSGTLTMQSDRFFNALKGHGALSRLVILPYESHGY 883
Query: 675 AARENVMHVIWETDRWLQKYCLSNTSDG 702
+ARE++MHV+WET RWL KYC+SNTSD
Sbjct: 884 SARESIMHVLWETGRWLHKYCVSNTSDA 911
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30690669|ref|NP_850473.1| prolyl oligopeptidase-like protein [Arabidopsis thaliana] gi|330255741|gb|AEC10835.1| prolyl oligopeptidase-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1062 bits (2747), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 506/748 (67%), Positives = 596/748 (79%), Gaps = 48/748 (6%)
Query: 1 MPFFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSC 60
M F+TG+GIH+LLPD +L PEKE+ G PDG KINFV+WS DGK +AFS+RVDE N S
Sbjct: 174 MSFYTGLGIHQLLPDGTLSPEKEITGIPDGGKINFVTWSNDGKHLAFSIRVDENGN--SS 231
Query: 61 KLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPL 120
K VW+AD ETG A+PLF S DI LNA+F SFVW++NSTLL+ TIPSSR +PPKK +VP
Sbjct: 232 KPVVWVADVETGVARPLFNSQDIFLNAIFESFVWIDNSTLLVSTIPSSRGEPPKKPLVPS 291
Query: 121 GPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTPAVYTAV 180
GPK SNE K ++ R +LLKDEYD LFDYY ++QLVL SLDGT K+ G PAVYT++
Sbjct: 292 GPKTLSNETKTVVQVRTFQDLLKDEYDADLFDYYASSQLVLASLDGTVKEVGVPAVYTSL 351
Query: 181 EPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240
+PS D KY+L++S+HRPYS+ VPC RF +KV+VWTTDG+ VR+LCDLP AEDIP+ NSV
Sbjct: 352 DPSTDHKYLLVSSLHRPYSFIVPCGRFPKKVEVWTTDGRFVRQLCDLPLAEDIPIASNSV 411
Query: 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLR 300
R+GMRSI+WRADKPSTLYW E QD GDA +EVSPRDI+Y Q AEP GE+PE+LHKLDLR
Sbjct: 412 RKGMRSINWRADKPSTLYWAETQDGGDAKMEVSPRDIVYMQSAEPLAGEEPEVLHKLDLR 471
Query: 301 FRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTR 360
+ +SWCDD+LALV E+WYKT +TRTW++ PGS DV+PR+LFDR E+VYSDPGS M+ R
Sbjct: 472 YGGISWCDDTLALVYESWYKTRRTRTWVISPGSNDVSPRILFDRSSEDVYSDPGSTMLRR 531
Query: 361 TSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFE 420
T GT VIAKIKKENDE Y+LLNG G TP+GN+PFLDLFDINTG+KERIWES++EKYFE
Sbjct: 532 TDAGTYVIAKIKKENDEGTYVLLNGSGATPQGNVPFLDLFDINTGNKERIWESDKEKYFE 591
Query: 421 TAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTLASL 480
T VAL+ Q E D+ + +LKILTSKESKTE TQY + WP +K QITNFPHPYP LASL
Sbjct: 592 TVVALMSDQKEGDLKMEELKILTSKESKTENTQYSLQLWPDRKVQQITNFPHPYPQLASL 651
Query: 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEF 540
QKEMI+YQRKDGV LTATLYLPPGYD SKDGPLPCLFW+YP ++KSKDAAGQVRGSPNEF
Sbjct: 652 QKEMIRYQRKDGVQLTATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEF 711
Query: 541 SGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVAD 600
+G+ TS+L++LARRFA+L+GP+IPIIGEGD+ NDR+VEQLV+SAEAAVEEVVRRGVAD
Sbjct: 712 AGIGSTSALLWLARRFAILSGPTIPIIGEGDEEANDRYVEQLVASAEAAVEEVVRRGVAD 771
Query: 601 PSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQAE----------- 649
S+IAVGGHSYGAFMTA+LLAHAPHLF CGIARSG+YN+TLTPFGFQ E
Sbjct: 772 RSKIAVGGHSYGAFMTANLLAHAPHLFACGIARSGAYNRTLTPFGFQNEDRTLWEATNVY 831
Query: 650 -----------------------------------RFFDALKGHGALSRLVLLPFEHHVY 674
RFF+ALKGHGAL RLV+LP E H Y
Sbjct: 832 VEMSPFMSANKIKKPILLIHGEEDNNPGTLTMQSDRFFNALKGHGALCRLVVLPHESHGY 891
Query: 675 AARENVMHVIWETDRWLQKYCLSNTSDG 702
+ARE++MHV+WETDRWLQKYC+ NTSD
Sbjct: 892 SARESIMHVLWETDRWLQKYCVPNTSDA 919
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297828471|ref|XP_002882118.1| serine-type peptidase [Arabidopsis lyrata subsp. lyrata] gi|297327957|gb|EFH58377.1| serine-type peptidase [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1061 bits (2745), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 505/748 (67%), Positives = 597/748 (79%), Gaps = 48/748 (6%)
Query: 1 MPFFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSC 60
M F+TG+GIH+LLPD +L PEKE+ G PDG KINFV+WS DGK +AFS+RVDE N S
Sbjct: 174 MSFYTGLGIHQLLPDGTLSPEKEITGIPDGGKINFVTWSNDGKHLAFSIRVDENGN--SS 231
Query: 61 KLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPL 120
K VW+AD ETG A+PLF+S DI LNA+F SFVW++NSTLL+ TIPSSR DPPKK +VP
Sbjct: 232 KPVVWVADVETGLARPLFKSQDIYLNAIFESFVWIDNSTLLVSTIPSSRGDPPKKPLVPS 291
Query: 121 GPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTPAVYTAV 180
GPK SNE K ++ R +LLKDEYD LFDYY T+QLVL SLDGT K+ G PAVYT++
Sbjct: 292 GPKTLSNETKTVVQVRTFQDLLKDEYDADLFDYYATSQLVLASLDGTVKEVGVPAVYTSL 351
Query: 181 EPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240
+PS D KY+L++S+HRPYS+ VPC R +KV+VWTTDG+ VR+LCDLP AEDIP+ NSV
Sbjct: 352 DPSTDHKYLLVSSLHRPYSFIVPCGRLPKKVEVWTTDGRFVRQLCDLPLAEDIPIASNSV 411
Query: 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLR 300
R+GMRSI+WRADKPST+YW E QD GDA +EVSPRDI+Y Q AEP GE+PE+LHKLDLR
Sbjct: 412 RKGMRSINWRADKPSTIYWAETQDGGDAKIEVSPRDIVYMQSAEPLAGEEPEVLHKLDLR 471
Query: 301 FRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTR 360
+ +SWCDD+LALV E+WYKT +TRTW++ PGS DV+PR+LFDR E+VYSDPGS M+ R
Sbjct: 472 YGGISWCDDTLALVYESWYKTRRTRTWVISPGSNDVSPRILFDRSSEDVYSDPGSTMLRR 531
Query: 361 TSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFE 420
T+ GT VIAKIKKENDE Y+LLNG G TP+GN+PFLDLFDINTG+KERIWES++EKYFE
Sbjct: 532 TAAGTYVIAKIKKENDEGTYVLLNGSGATPQGNVPFLDLFDINTGNKERIWESDKEKYFE 591
Query: 421 TAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTLASL 480
T VAL+ Q E D+ + +LKILTSKESKTE TQY + WP +K QITNFPHPYP LASL
Sbjct: 592 TVVALMSDQKEGDLKMEELKILTSKESKTENTQYSLQLWPDRKVQQITNFPHPYPQLASL 651
Query: 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEF 540
QKEMI+YQRKDGV LTATLYLPPGYD SKDGPLPCLFW+YP ++KSKDAAGQVRGSPNEF
Sbjct: 652 QKEMIRYQRKDGVQLTATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEF 711
Query: 541 SGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVAD 600
+G+ TS+L++LARRFA+L+GP+IPIIGEGD+ NDR+VEQLV+SAEAAVEEVVRRGVA
Sbjct: 712 AGIGSTSALLWLARRFAILSGPTIPIIGEGDEEANDRYVEQLVASAEAAVEEVVRRGVAH 771
Query: 601 PSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQAE----------- 649
PS+IAVGGHSYGAFMTA+LLAHAPHLF CGIARSG+YN+TLTPFGFQ E
Sbjct: 772 PSKIAVGGHSYGAFMTANLLAHAPHLFSCGIARSGAYNRTLTPFGFQNEDRTLWEATNVY 831
Query: 650 -----------------------------------RFFDALKGHGALSRLVLLPFEHHVY 674
RFF+ALKGHGAL RLV+LP E H Y
Sbjct: 832 VEMSPFMSANKIKKPILLIHGEEDNNPGTLTMQSDRFFNALKGHGALCRLVVLPHESHGY 891
Query: 675 AARENVMHVIWETDRWLQKYCLSNTSDG 702
+ARE++MHV+WETDRWLQKYC+ NT+D
Sbjct: 892 SARESIMHVLWETDRWLQKYCVPNTADA 919
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|332278170|sp|Q8VZF3.2|CGEP_ARATH RecName: Full=Probable glutamyl endopeptidase, chloroplastic; Flags: Precursor | Back alignment and taxonomy information |
|---|
Score = 1055 bits (2729), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 505/748 (67%), Positives = 595/748 (79%), Gaps = 49/748 (6%)
Query: 1 MPFFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSC 60
M F+TG+GIH+LLPD +L PEKE+ G PDG KINFV+WS DGK +AFS+RVDE N S
Sbjct: 174 MSFYTGLGIHQLLPDGTLSPEKEITGIPDGGKINFVTWSNDGKHLAFSIRVDENGN--SS 231
Query: 61 KLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPL 120
K VW+AD ETG A+PLF S DI LNA+F SFVW++NSTLL+ TIPSSR +PPKK +VP
Sbjct: 232 KPVVWVADVETGVARPLFNSQDIFLNAIFESFVWIDNSTLLVSTIPSSRGEPPKKPLVPS 291
Query: 121 GPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTPAVYTAV 180
GPK SNE K ++ R +LLKDEYD LFDYY ++QLVL SLDGT K+ G PAVYT++
Sbjct: 292 GPKTLSNETKTVVQVRTFQDLLKDEYDADLFDYYASSQLVLASLDGTVKEVGVPAVYTSL 351
Query: 181 EPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240
+PS D KY+L++S+HRPYS+ VPC RF +KV+VWTTDG+ VR+LCDLP AEDIP+ NSV
Sbjct: 352 DPSTDHKYLLVSSLHRPYSFIVPCGRFPKKVEVWTTDGRFVRQLCDLPLAEDIPIASNSV 411
Query: 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLR 300
R+GMRSI+WRADKPSTL W E QD GDA +EVSPRDI+Y Q AEP GE+PE+LHKLDLR
Sbjct: 412 RKGMRSINWRADKPSTL-WAETQDGGDAKMEVSPRDIVYMQSAEPLAGEEPEVLHKLDLR 470
Query: 301 FRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTR 360
+ +SWCDD+LALV E+WYKT +TRTW++ PGS DV+PR+LFDR E+VYSDPGS M+ R
Sbjct: 471 YGGISWCDDTLALVYESWYKTRRTRTWVISPGSNDVSPRILFDRSSEDVYSDPGSTMLRR 530
Query: 361 TSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFE 420
T GT VIAKIKKENDE Y+LLNG G TP+GN+PFLDLFDINTG+KERIWES++EKYFE
Sbjct: 531 TDAGTYVIAKIKKENDEGTYVLLNGSGATPQGNVPFLDLFDINTGNKERIWESDKEKYFE 590
Query: 421 TAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTLASL 480
T VAL+ Q E D+ + +LKILTSKESKTE TQY + WP +K QITNFPHPYP LASL
Sbjct: 591 TVVALMSDQKEGDLKMEELKILTSKESKTENTQYSLQLWPDRKVQQITNFPHPYPQLASL 650
Query: 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEF 540
QKEMI+YQRKDGV LTATLYLPPGYD SKDGPLPCLFW+YP ++KSKDAAGQVRGSPNEF
Sbjct: 651 QKEMIRYQRKDGVQLTATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEF 710
Query: 541 SGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVAD 600
+G+ TS+L++LARRFA+L+GP+IPIIGEGD+ NDR+VEQLV+SAEAAVEEVVRRGVAD
Sbjct: 711 AGIGSTSALLWLARRFAILSGPTIPIIGEGDEEANDRYVEQLVASAEAAVEEVVRRGVAD 770
Query: 601 PSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQAE----------- 649
S+IAVGGHSYGAFMTA+LLAHAPHLF CGIARSG+YN+TLTPFGFQ E
Sbjct: 771 RSKIAVGGHSYGAFMTANLLAHAPHLFACGIARSGAYNRTLTPFGFQNEDRTLWEATNVY 830
Query: 650 -----------------------------------RFFDALKGHGALSRLVLLPFEHHVY 674
RFF+ALKGHGAL RLV+LP E H Y
Sbjct: 831 VEMSPFMSANKIKKPILLIHGEEDNNPGTLTMQSDRFFNALKGHGALCRLVVLPHESHGY 890
Query: 675 AARENVMHVIWETDRWLQKYCLSNTSDG 702
+ARE++MHV+WETDRWLQKYC+ NTSD
Sbjct: 891 SARESIMHVLWETDRWLQKYCVPNTSDA 918
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 706 | ||||||
| UNIPROTKB|Q8EHB8 | 801 | SO_1310 "Serine peptidase S9 f | 0.703 | 0.620 | 0.315 | 1.2e-79 | |
| TIGR_CMR|SO_1310 | 801 | SO_1310 "conserved hypothetica | 0.703 | 0.620 | 0.315 | 1.2e-79 | |
| TIGR_CMR|SO_4618 | 645 | SO_4618 "prolyl oligopeptidase | 0.215 | 0.235 | 0.243 | 0.00075 |
| UNIPROTKB|Q8EHB8 SO_1310 "Serine peptidase S9 family" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 650 (233.9 bits), Expect = 1.2e-79, Sum P(3) = 1.2e-79
Identities = 162/514 (31%), Positives = 252/514 (49%)
Query: 136 RMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTPAVYTAVEPSPDQKYVLITSMH 195
R +LLK D+ LF TT+QL L L+G G P + SPD +Y+L +
Sbjct: 210 RTYQDLLKTSADKQLFSRLTTSQLALVDLEGKLTKIGAPGIIEDFSVSPDGQYILSRQIT 269
Query: 196 RPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPS 255
P+S +V F +++ +G+L+ L E P +SV G R W + +
Sbjct: 270 TPFSTQVKYDDFPTLTEIYNLNGQLITLLHQSQGGESRPQGKDSVLPGPRMFHWVQGQAA 329
Query: 256 TLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVN 315
TL + +A D+GD+ + RD ++ +P ++ + + R + W ++ LAL+
Sbjct: 330 TLAFTKALDQGDSQRDAPQRDSLWL--LDPPFTQQATRVAQTQWRITDIDWAENHLALIT 387
Query: 316 ETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKEN 375
E K Q R + + + L +R + Y D G G + ++ +
Sbjct: 388 ERNSKAQQIRLSSLNTRLGESSLHTLNERNLRDKYQDLGL-FAKHYYPGKGQVVSLQ-QG 445
Query: 376 DEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDIN 435
+ ++ G+G TP+G+ PFL + T +W+S + +V V +N
Sbjct: 446 AKTTGLIHYGQGATPQGDKPFLKRTSLITSESSLLWQSASNRL--ESVRYV-------LN 496
Query: 436 LNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTLASLQKEMIKYQRKDGVPL 495
L+ L+++ ++ES TE +L+ K S + P +QK++I ++R DGVPL
Sbjct: 497 LDPLQLIINRESPTESPSLVLLN--AAKESVLYEQPDGLSAYLGMQKQLITFKRADGVPL 554
Query: 496 TATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARR 555
+ TLYLP Y + + G LP L WAYP ++ + AGQ+ S N++ ++P + +A
Sbjct: 555 SGTLYLPANYTKEQ-GTLPVLMWAYPREFNDPEVAGQISFSANQYPTISPRGPIPLVAEG 613
Query: 556 FAVLAGPSIPIIGEGDKLPNDRFXXXXXXXXXXXXXXXXXXXXXDPSRIAVGGHSYGAFM 615
FAV S+PII +GDK ND F D +IAVGGHSYGAFM
Sbjct: 614 FAVFDKVSMPIIAQGDKESNDTFREQLTANAQAAIDTLVDLGIADRKQIAVGGHSYGAFM 673
Query: 616 TAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQAE 649
A+LLAH LF GIARSG+YN++LTPFGFQ E
Sbjct: 674 VANLLAHTD-LFYAGIARSGAYNRSLTPFGFQNE 706
|
|
| TIGR_CMR|SO_1310 SO_1310 "conserved hypothetical protein" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 650 (233.9 bits), Expect = 1.2e-79, Sum P(3) = 1.2e-79
Identities = 162/514 (31%), Positives = 252/514 (49%)
Query: 136 RMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTPAVYTAVEPSPDQKYVLITSMH 195
R +LLK D+ LF TT+QL L L+G G P + SPD +Y+L +
Sbjct: 210 RTYQDLLKTSADKQLFSRLTTSQLALVDLEGKLTKIGAPGIIEDFSVSPDGQYILSRQIT 269
Query: 196 RPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPS 255
P+S +V F +++ +G+L+ L E P +SV G R W + +
Sbjct: 270 TPFSTQVKYDDFPTLTEIYNLNGQLITLLHQSQGGESRPQGKDSVLPGPRMFHWVQGQAA 329
Query: 256 TLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVN 315
TL + +A D+GD+ + RD ++ +P ++ + + R + W ++ LAL+
Sbjct: 330 TLAFTKALDQGDSQRDAPQRDSLWL--LDPPFTQQATRVAQTQWRITDIDWAENHLALIT 387
Query: 316 ETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKEN 375
E K Q R + + + L +R + Y D G G + ++ +
Sbjct: 388 ERNSKAQQIRLSSLNTRLGESSLHTLNERNLRDKYQDLGL-FAKHYYPGKGQVVSLQ-QG 445
Query: 376 DEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDIN 435
+ ++ G+G TP+G+ PFL + T +W+S + +V V +N
Sbjct: 446 AKTTGLIHYGQGATPQGDKPFLKRTSLITSESSLLWQSASNRL--ESVRYV-------LN 496
Query: 436 LNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTLASLQKEMIKYQRKDGVPL 495
L+ L+++ ++ES TE +L+ K S + P +QK++I ++R DGVPL
Sbjct: 497 LDPLQLIINRESPTESPSLVLLN--AAKESVLYEQPDGLSAYLGMQKQLITFKRADGVPL 554
Query: 496 TATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARR 555
+ TLYLP Y + + G LP L WAYP ++ + AGQ+ S N++ ++P + +A
Sbjct: 555 SGTLYLPANYTKEQ-GTLPVLMWAYPREFNDPEVAGQISFSANQYPTISPRGPIPLVAEG 613
Query: 556 FAVLAGPSIPIIGEGDKLPNDRFXXXXXXXXXXXXXXXXXXXXXDPSRIAVGGHSYGAFM 615
FAV S+PII +GDK ND F D +IAVGGHSYGAFM
Sbjct: 614 FAVFDKVSMPIIAQGDKESNDTFREQLTANAQAAIDTLVDLGIADRKQIAVGGHSYGAFM 673
Query: 616 TAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQAE 649
A+LLAH LF GIARSG+YN++LTPFGFQ E
Sbjct: 674 VANLLAHTD-LFYAGIARSGAYNRSLTPFGFQNE 706
|
|
| TIGR_CMR|SO_4618 SO_4618 "prolyl oligopeptidase family protein" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 98 (39.6 bits), Expect = 0.00075, Sum P(3) = 0.00075
Identities = 39/160 (24%), Positives = 70/160 (43%)
Query: 20 PEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFE 79
P+ V + ++ V SPDGK+IA VRV++ + V I D ETG
Sbjct: 22 PQLPVEAFASIPDVSSVQLSPDGKKIASIVRVEQPKLKGTV---VSILDLETGTKDVAIH 78
Query: 80 SPDICLNAVFGSFVWVNNSTLLIFT-IPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMT 138
+ + V S W N++TLLI P++R P + + + + +++ +
Sbjct: 79 TDN--QKFVMLSLTWANDTTLLIKAEFPANRDGTPTTETRLVKYDLTTRKTSSVLAPSVI 136
Query: 139 DNLLK-DEYDESLFDYYTT-AQLVLGSLDGTAKDFGTPAV 176
+ L ++ + D ++ +L SLDG + G +V
Sbjct: 137 ERLSWIPQHQGQIIDLMPDDSEHILLSLDGMGQKAGEDSV 176
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q10MJ1 | CGEP_ORYSJ | 3, ., 4, ., 2, 1, ., - | 0.6715 | 0.9886 | 0.7441 | yes | no |
| Q8VZF3 | CGEP_ARATH | 3, ., 4, ., 2, 1, ., - | 0.6751 | 0.9900 | 0.7281 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| GSVIVG00028112001 | SubName- Full=Chromosome chr7 scaffold_42, whole genome shotgun sequence; (884 aa) | ||||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| GSVIVG00015534001 | SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (725 aa) | • | 0.422 | ||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 706 | |||
| COG1506 | 620 | COG1506, DAP2, Dipeptidyl aminopeptidases/acylamin | 2e-23 | |
| pfam00326 | 212 | pfam00326, Peptidase_S9, Prolyl oligopeptidase fam | 4e-10 | |
| pfam12697 | 187 | pfam12697, Abhydrolase_6, Alpha/beta hydrolase fam | 5e-05 | |
| COG0400 | 207 | COG0400, COG0400, Predicted esterase [General func | 7e-05 | |
| COG4099 | 387 | COG4099, COG4099, Predicted peptidase [General fun | 1e-04 | |
| COG3509 | 312 | COG3509, LpqC, Poly(3-hydroxybutyrate) depolymeras | 0.001 | |
| pfam12695 | 145 | pfam12695, Abhydrolase_5, Alpha/beta hydrolase fam | 0.002 |
| >gnl|CDD|224423 COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 2e-23
Identities = 68/321 (21%), Positives = 113/321 (35%), Gaps = 76/321 (23%)
Query: 432 EDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTLASL-QKEMIKYQRK 490
+++ K+ + S TE I + + +++T+ + L + E + Y+
Sbjct: 316 PGFDVDGRKLALAYSSPTE--PPEIYLYDRGEEAKLTSSNNSGLKKVKLAEPEPVTYKSN 373
Query: 491 DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLI 550
DG + LY PPG+D K PL + + + G P+ G + +
Sbjct: 374 DGETIHGWLYKPPGFDPRKKYPL--IVYIH--------------GGPSAQVGYSFNPEIQ 417
Query: 551 FLARR-FAVLAGPSIPIIGEGDK---LPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAV 606
LA +AVLA G G + + + AAV+ +V+ + DP RI +
Sbjct: 418 VLASAGYAVLAPNYRGSTGYGREFADAIRGDWGGVDLEDLIAAVDALVKLPLVDPERIGI 477
Query: 607 GGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGF-------------------- 646
G SYG +MT P F +A +G + L
Sbjct: 478 TGGSYGGYMTLLAATKTP-RFKAAVAVAGGVDWLLYFGESTEGLRFDPEENGGGPPEDRE 536
Query: 647 --------------------------------QAERFFDALKGHGALSRLVLLPFEHHVY 674
QAE+ DALK G LV+ P E H +
Sbjct: 537 KYEDRSPIFYADNIKTPLLLIHGEEDDRVPIEQAEQLVDALKRKGKPVELVVFPDEGHGF 596
Query: 675 AARENVMHVIWETDRWLQKYC 695
+ EN + V+ E W +++
Sbjct: 597 SRPENRVKVLKEILDWFKRHL 617
|
Length = 620 |
| >gnl|CDD|215859 pfam00326, Peptidase_S9, Prolyl oligopeptidase family | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 4e-10
Identities = 33/177 (18%), Positives = 51/177 (28%), Gaps = 56/177 (31%)
Query: 570 GDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCC 629
G + + AA E ++ +G DP R+A+ G SYG ++T L P LF
Sbjct: 36 GKGDLGQNEFDDFI----AAAEYLIAQGYVDPDRLAIWGGSYGGYLTGAALNQRPDLFKA 91
Query: 630 GIARSG-----SYNKTLTPFG--------------------------------------- 645
+A +Y +PF
Sbjct: 92 AVAVVPVVDWLTYMSDTSPFTERYMEWGNPWDNEEGYRYLSPYSPYDNVKAYPPLLLIHG 151
Query: 646 --------FQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKY 694
+A + AL+ G L++ P E H N +L K
Sbjct: 152 LHDDRVPPAEALKLVAALQAKGKNVLLLIFPDEGHGGGKPRNKREEYARELAFLLKV 208
|
Length = 212 |
| >gnl|CDD|221720 pfam12697, Abhydrolase_6, Alpha/beta hydrolase family | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 5e-05
Identities = 22/115 (19%), Positives = 37/115 (32%), Gaps = 8/115 (6%)
Query: 551 FLARRFAVLAGPSIPIIGEGDKLPNDRF-VEQLVSSAEAAVEEVVRRGVADPSRIAVGGH 609
LA + VLA P +P G+ D P + +E + A ++ + + + GH
Sbjct: 20 ALAAGYRVLA-PDLPGHGDSDGPPRTPYSLEDDAADLAALLDAL------GLGPVVLVGH 72
Query: 610 SYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQAERFFDALKGHGALSRL 664
S G + A P + S A L+ + L
Sbjct: 73 SLGGAVALAAAARRPERVAGLVLISPPLRDLEELLAADAAALLALLRAALLDADL 127
|
This family contains alpha/beta hydrolase enzymes of diverse specificity. Length = 187 |
| >gnl|CDD|223477 COG0400, COG0400, Predicted esterase [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 7e-05
Identities = 17/49 (34%), Positives = 21/49 (42%)
Query: 587 EAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSG 635
+EE+ D SRI + G S GA + L P LF I SG
Sbjct: 84 AEFLEELAEEYGIDSSRIILIGFSQGANIALSLGLTLPGLFAGAILFSG 132
|
Length = 207 |
| >gnl|CDD|226584 COG4099, COG4099, Predicted peptidase [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 1e-04
Identities = 31/155 (20%), Positives = 51/155 (32%), Gaps = 16/155 (10%)
Query: 487 YQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPT 546
Y G L LY P Y K P + + + D +
Sbjct: 166 YDESTGNELKYRLYTPKDYAPDKKY-YPLVLFLHGAGQGGSDNDKVLSSG---------I 215
Query: 547 SSLIFLARRFA--VLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRI 604
++ + VLA PI + ++ +E++ + +E + D SRI
Sbjct: 216 GAIAWAGPEDQCFVLAPQYNPIFADSEEKTLLYLIEKI----DLILEVLASTYNIDRSRI 271
Query: 605 AVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNK 639
V G S G F T L P F + +G ++
Sbjct: 272 YVIGLSRGGFGTWALAEKFPDFFAAAVPIAGGGDR 306
|
Length = 387 |
| >gnl|CDD|226040 COG3509, LpqC, Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.001
Identities = 38/178 (21%), Positives = 55/178 (30%), Gaps = 31/178 (17%)
Query: 491 DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSK-DAAGQVRGSPNEFSGMTPTSSL 549
+G+ + LY+PPG PL + + S AGQ+ G+ G
Sbjct: 43 NGLKRSYRLYVPPGLPSGA--PLVVVL------HGSGGSGAGQLHGT-----GW----DA 85
Query: 550 IFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQL------VSSAEAAVEEVVRRGVADPSR 603
+ F V + N V A V ++V DP+R
Sbjct: 86 LADREGFLVAYPDGYDRAWNANGCGNWFGPADRRRGVDDVGFLRALVAKLVNEYGIDPAR 145
Query: 604 IAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGF--QAERFFDALKGHG 659
+ V G S G M L P +F +G L G R + HG
Sbjct: 146 VYVTGLSNGGRMANRLACEYPDIFAAIAPVAG-----LLALGVACTPPRPVSVMAFHG 198
|
Length = 312 |
| >gnl|CDD|221718 pfam12695, Abhydrolase_5, Alpha/beta hydrolase family | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 0.002
Identities = 14/42 (33%), Positives = 17/42 (40%)
Query: 584 SSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH 625
S E V+ DP RI + GHS G + L A P
Sbjct: 40 SLGAPDAEAVLADAPLDPERIVLVGHSLGGGVALLLAARDPR 81
|
This family contains a diverse range of alpha/beta hydrolase enzymes. Length = 145 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 706 | |||
| COG1506 | 620 | DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept | 100.0 | |
| PRK10115 | 686 | protease 2; Provisional | 100.0 | |
| KOG2281 | 867 | consensus Dipeptidyl aminopeptidases/acylaminoacyl | 100.0 | |
| KOG2100 | 755 | consensus Dipeptidyl aminopeptidase [Posttranslati | 99.97 | |
| COG1770 | 682 | PtrB Protease II [Amino acid transport and metabol | 99.93 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.93 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.93 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.92 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.92 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.92 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.92 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.91 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.91 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.9 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.9 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.9 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.9 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.9 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.89 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.89 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.89 | |
| PF00326 | 213 | Peptidase_S9: Prolyl oligopeptidase family This fa | 99.87 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.85 | |
| KOG2237 | 712 | consensus Predicted serine protease [Posttranslati | 99.85 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.85 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 99.83 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.81 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.81 | |
| COG1505 | 648 | Serine proteases of the peptidase family S9A [Amin | 99.8 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.8 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 99.78 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 99.75 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 99.75 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 99.73 | |
| COG0412 | 236 | Dienelactone hydrolase and related enzymes [Second | 99.72 | |
| PF01738 | 218 | DLH: Dienelactone hydrolase family; InterPro: IPR0 | 99.68 | |
| PF05448 | 320 | AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR0 | 99.63 | |
| TIGR02821 | 275 | fghA_ester_D S-formylglutathione hydrolase. This m | 99.63 | |
| PRK10162 | 318 | acetyl esterase; Provisional | 99.6 | |
| PLN02442 | 283 | S-formylglutathione hydrolase | 99.6 | |
| PRK10566 | 249 | esterase; Provisional | 99.59 | |
| PRK05077 | 414 | frsA fermentation/respiration switch protein; Revi | 99.57 | |
| PLN02298 | 330 | hydrolase, alpha/beta fold family protein | 99.53 | |
| PF12715 | 390 | Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8 | 99.5 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.49 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.49 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 99.48 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.48 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 99.47 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.45 | |
| PRK13604 | 307 | luxD acyl transferase; Provisional | 99.44 | |
| PLN02385 | 349 | hydrolase; alpha/beta fold family protein | 99.44 | |
| COG0657 | 312 | Aes Esterase/lipase [Lipid metabolism] | 99.41 | |
| KOG1515 | 336 | consensus Arylacetamide deacetylase [Defense mecha | 99.4 | |
| COG3458 | 321 | Acetyl esterase (deacetylase) [Secondary metabolit | 99.4 | |
| KOG1455 | 313 | consensus Lysophospholipase [Lipid transport and m | 99.39 | |
| PHA02857 | 276 | monoglyceride lipase; Provisional | 99.38 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.37 | |
| COG4099 | 387 | Predicted peptidase [General function prediction o | 99.35 | |
| TIGR01840 | 212 | esterase_phb esterase, PHB depolymerase family. Th | 99.34 | |
| PRK10749 | 330 | lysophospholipase L2; Provisional | 99.34 | |
| PRK11460 | 232 | putative hydrolase; Provisional | 99.34 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.34 | |
| PRK10439 | 411 | enterobactin/ferric enterobactin esterase; Provisi | 99.33 | |
| KOG4391 | 300 | consensus Predicted alpha/beta hydrolase BEM46 [Ge | 99.3 | |
| COG1647 | 243 | Esterase/lipase [General function prediction only] | 99.3 | |
| TIGR03101 | 266 | hydr2_PEP hydrolase, ortholog 2, exosortase system | 99.28 | |
| TIGR03100 | 274 | hydr1_PEP hydrolase, ortholog 1, exosortase system | 99.28 | |
| PF06500 | 411 | DUF1100: Alpha/beta hydrolase of unknown function | 99.27 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.27 | |
| PF10503 | 220 | Esterase_phd: Esterase PHB depolymerase | 99.27 | |
| TIGR00976 | 550 | /NonD putative hydrolase, CocE/NonD family. This m | 99.27 | |
| KOG3101 | 283 | consensus Esterase D [General function prediction | 99.26 | |
| PF07859 | 211 | Abhydrolase_3: alpha/beta hydrolase fold A web pag | 99.26 | |
| PLN00021 | 313 | chlorophyllase | 99.25 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.25 | |
| PRK05371 | 767 | x-prolyl-dipeptidyl aminopeptidase; Provisional | 99.23 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 99.22 | |
| COG3509 | 312 | LpqC Poly(3-hydroxybutyrate) depolymerase [Seconda | 99.22 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.21 | |
| PLN02652 | 395 | hydrolase; alpha/beta fold family protein | 99.21 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.21 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.21 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.19 | |
| COG2267 | 298 | PldB Lysophospholipase [Lipid metabolism] | 99.19 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 99.18 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.18 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.17 | |
| COG2945 | 210 | Predicted hydrolase of the alpha/beta superfamily | 99.17 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.17 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 99.16 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.16 | |
| PF02129 | 272 | Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 fam | 99.15 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.13 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.12 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 99.11 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.11 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.1 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.1 | |
| PF02230 | 216 | Abhydrolase_2: Phospholipase/Carboxylesterase; Int | 99.09 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.06 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.05 | |
| PF00756 | 251 | Esterase: Putative esterase; InterPro: IPR000801 T | 99.04 | |
| COG2382 | 299 | Fes Enterochelin esterase and related enzymes [Ino | 99.04 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.03 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.03 | |
| TIGR01607 | 332 | PST-A Plasmodium subtelomeric family (PST-A). Thes | 99.03 | |
| PLN02872 | 395 | triacylglycerol lipase | 99.03 | |
| cd00312 | 493 | Esterase_lipase Esterases and lipases (includes fu | 99.02 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.02 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.02 | |
| PF08840 | 213 | BAAT_C: BAAT / Acyl-CoA thioester hydrolase C term | 99.02 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 98.99 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 98.99 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.98 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.97 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 98.97 | |
| PF12740 | 259 | Chlorophyllase2: Chlorophyllase enzyme; InterPro: | 98.97 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 98.95 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 98.95 | |
| PF12695 | 145 | Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3 | 98.95 | |
| COG0400 | 207 | Predicted esterase [General function prediction on | 98.93 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 98.92 | |
| COG2272 | 491 | PnbA Carboxylesterase type B [Lipid metabolism] | 98.89 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 98.89 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.89 | |
| KOG1552 | 258 | consensus Predicted alpha/beta hydrolase [General | 98.88 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 98.86 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 98.84 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 98.82 | |
| PF03403 | 379 | PAF-AH_p_II: Platelet-activating factor acetylhydr | 98.82 | |
| TIGR03343 | 282 | biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-die | 98.82 | |
| PRK10673 | 255 | acyl-CoA esterase; Provisional | 98.81 | |
| PF00135 | 535 | COesterase: Carboxylesterase family The prints ent | 98.81 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 98.81 | |
| COG2936 | 563 | Predicted acyl esterases [General function predict | 98.8 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 98.8 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.78 | |
| PRK10115 | 686 | protease 2; Provisional | 98.78 | |
| KOG3043 | 242 | consensus Predicted hydrolase related to dienelact | 98.77 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 98.77 | |
| TIGR03611 | 257 | RutD pyrimidine utilization protein D. This protei | 98.77 | |
| TIGR03695 | 251 | menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene | 98.75 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 98.74 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 98.72 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 98.72 | |
| TIGR02427 | 251 | protocat_pcaD 3-oxoadipate enol-lactonase. Members | 98.71 | |
| PLN02824 | 294 | hydrolase, alpha/beta fold family protein | 98.7 | |
| PRK10985 | 324 | putative hydrolase; Provisional | 98.69 | |
| TIGR03056 | 278 | bchO_mg_che_rel putative magnesium chelatase acces | 98.69 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 98.67 | |
| PTZ00421 | 493 | coronin; Provisional | 98.65 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 98.64 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 98.64 | |
| COG2819 | 264 | Predicted hydrolase of the alpha/beta superfamily | 98.61 | |
| PF07224 | 307 | Chlorophyllase: Chlorophyllase; InterPro: IPR01082 | 98.61 | |
| KOG4178 | 322 | consensus Soluble epoxide hydrolase [Lipid transpo | 98.61 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 98.6 | |
| PLN02511 | 388 | hydrolase | 98.58 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 98.58 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 98.58 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 98.58 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 98.57 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 98.56 | |
| PTZ00421 | 493 | coronin; Provisional | 98.56 | |
| TIGR02240 | 276 | PHA_depoly_arom poly(3-hydroxyalkanoate) depolymer | 98.54 | |
| KOG3847 | 399 | consensus Phospholipase A2 (platelet-activating fa | 98.54 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.52 | |
| COG0627 | 316 | Predicted esterase [General function prediction on | 98.5 | |
| PLN02679 | 360 | hydrolase, alpha/beta fold family protein | 98.5 | |
| PTZ00420 | 568 | coronin; Provisional | 98.47 | |
| PRK14875 | 371 | acetoin dehydrogenase E2 subunit dihydrolipoyllysi | 98.47 | |
| TIGR01836 | 350 | PHA_synth_III_C poly(R)-hydroxyalkanoic acid synth | 98.47 | |
| PRK00870 | 302 | haloalkane dehalogenase; Provisional | 98.46 | |
| PTZ00420 | 568 | coronin; Provisional | 98.45 | |
| KOG4409 | 365 | consensus Predicted hydrolase/acyltransferase (alp | 98.44 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.42 | |
| PF12697 | 228 | Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3 | 98.41 | |
| TIGR01249 | 306 | pro_imino_pep_1 proline iminopeptidase, Neisseria- | 98.4 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 98.39 | |
| TIGR01738 | 245 | bioH putative pimeloyl-BioC--CoA transferase BioH. | 98.39 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 98.39 | |
| COG4188 | 365 | Predicted dienelactone hydrolase [General function | 98.38 | |
| PF08538 | 303 | DUF1749: Protein of unknown function (DUF1749); In | 98.38 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 98.37 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 98.35 | |
| TIGR01250 | 288 | pro_imino_pep_2 proline-specific peptidases, Bacil | 98.34 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 98.33 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 98.32 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.31 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 98.3 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 98.29 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 98.28 | |
| PRK11071 | 190 | esterase YqiA; Provisional | 98.27 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 98.26 | |
| PLN03087 | 481 | BODYGUARD 1 domain containing hydrolase; Provision | 98.25 | |
| PLN02965 | 255 | Probable pheophorbidase | 98.24 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 98.24 | |
| cd00707 | 275 | Pancreat_lipase_like Pancreatic lipase-like enzyme | 98.23 | |
| PLN02211 | 273 | methyl indole-3-acetate methyltransferase | 98.23 | |
| PLN02894 | 402 | hydrolase, alpha/beta fold family protein | 98.23 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 98.23 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.23 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 98.22 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 98.2 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 98.2 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 98.2 | |
| PRK10349 | 256 | carboxylesterase BioH; Provisional | 98.18 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 98.18 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 98.17 | |
| KOG4627 | 270 | consensus Kynurenine formamidase [Amino acid trans | 98.17 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 98.16 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 98.15 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 98.14 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 98.13 | |
| PF03583 | 290 | LIP: Secretory lipase ; InterPro: IPR005152 This e | 98.13 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 98.13 | |
| PRK03592 | 295 | haloalkane dehalogenase; Provisional | 98.12 | |
| PRK06489 | 360 | hypothetical protein; Provisional | 98.12 | |
| COG0429 | 345 | Predicted hydrolase of the alpha/beta-hydrolase fo | 98.1 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 98.09 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 98.08 | |
| PLN02578 | 354 | hydrolase | 98.07 | |
| KOG2564 | 343 | consensus Predicted acetyltransferases and hydrola | 98.06 | |
| PRK08775 | 343 | homoserine O-acetyltransferase; Provisional | 98.05 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.04 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 98.03 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.02 | |
| PRK11126 | 242 | 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxyl | 98.01 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.01 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 98.0 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 98.0 | |
| PRK03204 | 286 | haloalkane dehalogenase; Provisional | 98.0 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 97.99 | |
| KOG2624 | 403 | consensus Triglyceride lipase-cholesterol esterase | 97.99 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 97.97 | |
| KOG1838 | 409 | consensus Alpha/beta hydrolase [General function p | 97.95 | |
| PF09752 | 348 | DUF2048: Uncharacterized conserved protein (DUF204 | 97.94 | |
| TIGR03230 | 442 | lipo_lipase lipoprotein lipase. Members of this pr | 97.94 | |
| PLN02980 | 1655 | 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesi | 97.94 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 97.94 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 97.93 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 97.93 | |
| TIGR02171 | 912 | Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou | 97.93 | |
| COG1770 | 682 | PtrB Protease II [Amino acid transport and metabol | 97.91 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.91 | |
| TIGR01392 | 351 | homoserO_Ac_trn homoserine O-acetyltransferase. Th | 97.91 | |
| KOG1454 | 326 | consensus Predicted hydrolase/acyltransferase (alp | 97.91 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 97.91 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 97.9 | |
| PLN03084 | 383 | alpha/beta hydrolase fold protein; Provisional | 97.89 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 97.88 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 97.87 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 97.87 | |
| PRK07581 | 339 | hypothetical protein; Validated | 97.87 | |
| KOG1516 | 545 | consensus Carboxylesterase and related proteins [G | 97.83 | |
| TIGR01838 | 532 | PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, | 97.83 | |
| COG1506 | 620 | DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept | 97.81 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 97.81 | |
| KOG1553 | 517 | consensus Predicted alpha/beta hydrolase BAT5 [Gen | 97.75 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 97.74 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 97.74 | |
| PF05728 | 187 | UPF0227: Uncharacterised protein family (UPF0227); | 97.74 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 97.7 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 97.7 | |
| TIGR02171 | 912 | Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou | 97.68 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 97.67 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 97.65 | |
| PF06342 | 297 | DUF1057: Alpha/beta hydrolase of unknown function | 97.65 | |
| PF05577 | 434 | Peptidase_S28: Serine carboxypeptidase S28; InterP | 97.64 | |
| PRK00175 | 379 | metX homoserine O-acetyltransferase; Provisional | 97.64 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 97.62 | |
| PF10340 | 374 | DUF2424: Protein of unknown function (DUF2424); In | 97.62 | |
| PF00561 | 230 | Abhydrolase_1: alpha/beta hydrolase fold A web pag | 97.6 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 97.59 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 97.59 | |
| PRK05855 | 582 | short chain dehydrogenase; Validated | 97.57 | |
| KOG4667 | 269 | consensus Predicted esterase [Lipid transport and | 97.56 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 97.55 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 97.55 | |
| TIGR03502 | 792 | lipase_Pla1_cef extracellular lipase, Pla-1/cef fa | 97.54 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 97.47 | |
| PF05677 | 365 | DUF818: Chlamydia CHLPS protein (DUF818); InterPro | 97.44 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 97.4 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 97.39 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 97.39 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 97.38 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 97.36 | |
| KOG2112 | 206 | consensus Lysophospholipase [Lipid transport and m | 97.34 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 97.33 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 97.32 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 97.32 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 97.3 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.29 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 97.27 | |
| PF12146 | 79 | Hydrolase_4: Putative lysophospholipase; InterPro: | 97.27 | |
| PRK07868 | 994 | acyl-CoA synthetase; Validated | 97.26 | |
| TIGR01839 | 560 | PHA_synth_II poly(R)-hydroxyalkanoic acid synthase | 97.26 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 97.25 | |
| KOG2382 | 315 | consensus Predicted alpha/beta hydrolase [General | 97.24 | |
| KOG4389 | 601 | consensus Acetylcholinesterase/Butyrylcholinestera | 97.24 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 97.17 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 97.16 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 97.14 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 97.14 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 97.12 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.11 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 97.09 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 97.03 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 97.01 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 97.0 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 96.98 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 96.98 | |
| COG3208 | 244 | GrsT Predicted thioesterase involved in non-riboso | 96.97 | |
| COG3571 | 213 | Predicted hydrolase of the alpha/beta-hydrolase fo | 96.97 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 96.97 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 96.96 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 96.95 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 96.9 | |
| PTZ00472 | 462 | serine carboxypeptidase (CBP1); Provisional | 96.87 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 96.84 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 96.84 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.79 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 96.79 | |
| PF10230 | 266 | DUF2305: Uncharacterised conserved protein (DUF230 | 96.79 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 96.76 | |
| PLN02733 | 440 | phosphatidylcholine-sterol O-acyltransferase | 96.75 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 96.73 | |
| PF07819 | 225 | PGAP1: PGAP1-like protein; InterPro: IPR012908 The | 96.7 | |
| PRK06765 | 389 | homoserine O-acetyltransferase; Provisional | 96.7 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 96.69 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 96.67 | |
| COG4947 | 227 | Uncharacterized protein conserved in bacteria [Fun | 96.65 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 96.64 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 96.63 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 96.61 | |
| COG2021 | 368 | MET2 Homoserine acetyltransferase [Amino acid tran | 96.6 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 96.57 | |
| KOG2984 | 277 | consensus Predicted hydrolase [General function pr | 96.56 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 96.55 | |
| COG4757 | 281 | Predicted alpha/beta hydrolase [General function p | 96.52 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 96.48 | |
| PF06057 | 192 | VirJ: Bacterial virulence protein (VirJ); InterPro | 96.46 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 96.44 | |
| PF02273 | 294 | Acyl_transf_2: Acyl transferase; InterPro: IPR0031 | 96.41 | |
| PF11144 | 403 | DUF2920: Protein of unknown function (DUF2920); In | 96.38 | |
| KOG2182 | 514 | consensus Hydrolytic enzymes of the alpha/beta hyd | 96.37 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 96.33 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 96.28 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 96.28 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 96.25 | |
| PF01674 | 219 | Lipase_2: Lipase (class 2); InterPro: IPR002918 Li | 96.22 | |
| KOG2183 | 492 | consensus Prolylcarboxypeptidase (angiotensinase C | 96.2 | |
| PF07082 | 250 | DUF1350: Protein of unknown function (DUF1350); In | 96.2 | |
| PRK04940 | 180 | hypothetical protein; Provisional | 96.19 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 96.16 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 96.12 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 96.08 | |
| COG0596 | 282 | MhpC Predicted hydrolases or acyltransferases (alp | 96.07 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.07 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 96.02 | |
| PRK13614 | 573 | lipoprotein LpqB; Provisional | 96.02 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 96.01 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 96.0 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 96.0 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 95.99 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 95.97 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 95.96 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 95.96 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 95.95 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 95.94 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 95.89 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 95.88 | |
| PF00151 | 331 | Lipase: Lipase; InterPro: IPR013818 Triglyceride l | 95.86 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 95.8 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 95.75 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 95.74 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 95.74 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 95.72 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 95.7 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.69 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 95.65 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 95.64 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 95.64 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 95.61 | |
| COG3150 | 191 | Predicted esterase [General function prediction on | 95.6 | |
| PF12048 | 310 | DUF3530: Protein of unknown function (DUF3530); In | 95.58 | |
| PF06821 | 171 | Ser_hydrolase: Serine hydrolase; InterPro: IPR0106 | 95.5 | |
| PRK13613 | 599 | lipoprotein LpqB; Provisional | 95.5 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.45 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 95.45 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 95.41 | |
| KOG4840 | 299 | consensus Predicted hydrolases or acyltransferases | 95.4 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 95.36 | |
| PF07519 | 474 | Tannase: Tannase and feruloyl esterase; InterPro: | 95.35 | |
| PF00975 | 229 | Thioesterase: Thioesterase domain; InterPro: IPR00 | 95.24 | |
| PRK13615 | 557 | lipoprotein LpqB; Provisional | 95.19 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 95.18 | |
| TIGR03712 | 511 | acc_sec_asp2 accessory Sec system protein Asp2. Th | 95.12 | |
| KOG3967 | 297 | consensus Uncharacterized conserved protein [Funct | 95.1 | |
| COG4782 | 377 | Uncharacterized protein conserved in bacteria [Fun | 95.07 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 94.97 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 94.82 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 94.79 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 94.75 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 94.71 | |
| PF10142 | 367 | PhoPQ_related: PhoPQ-activated pathogenicity-relat | 94.56 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 94.53 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 94.34 | |
| PF00450 | 415 | Peptidase_S10: Serine carboxypeptidase; InterPro: | 94.29 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 94.28 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 94.22 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 94.17 | |
| PF11339 | 581 | DUF3141: Protein of unknown function (DUF3141); In | 94.11 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 94.01 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 93.98 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 93.98 | |
| KOG1520 | 376 | consensus Predicted alkaloid synthase/Surface muci | 93.93 | |
| PF11187 | 224 | DUF2974: Protein of unknown function (DUF2974); In | 93.89 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 93.87 | |
| KOG1214 | 1289 | consensus Nidogen and related basement membrane pr | 93.76 | |
| KOG2565 | 469 | consensus Predicted hydrolases or acyltransferases | 93.59 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 93.59 | |
| PRK13614 | 573 | lipoprotein LpqB; Provisional | 93.48 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 93.45 | |
| KOG3253 | 784 | consensus Predicted alpha/beta hydrolase [General | 93.39 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 93.35 | |
| PF05990 | 233 | DUF900: Alpha/beta hydrolase of unknown function ( | 93.17 | |
| COG3243 | 445 | PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid me | 93.15 | |
| KOG2551 | 230 | consensus Phospholipase/carboxyhydrolase [Amino ac | 93.12 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 93.08 | |
| PF01764 | 140 | Lipase_3: Lipase (class 3); InterPro: IPR002921 Tr | 92.92 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 92.8 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 92.7 | |
| cd00741 | 153 | Lipase Lipase. Lipases are esterases that can hydr | 92.69 | |
| PF06028 | 255 | DUF915: Alpha/beta hydrolase of unknown function ( | 92.61 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 92.46 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 92.41 | |
| PF03088 | 89 | Str_synth: Strictosidine synthase; InterPro: IPR01 | 92.11 | |
| COG1073 | 299 | Hydrolases of the alpha/beta superfamily [General | 92.1 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 92.04 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 91.59 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 91.59 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 91.54 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 91.51 | |
| KOG4388 | 880 | consensus Hormone-sensitive lipase HSL [Lipid tran | 91.44 | |
| COG3319 | 257 | Thioesterase domains of type I polyketide synthase | 91.41 | |
| PLN02209 | 437 | serine carboxypeptidase | 91.39 | |
| PRK13615 | 557 | lipoprotein LpqB; Provisional | 91.18 | |
| PF02450 | 389 | LCAT: Lecithin:cholesterol acyltransferase; InterP | 91.11 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 91.07 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 90.89 | |
| PF05057 | 217 | DUF676: Putative serine esterase (DUF676); InterPr | 90.31 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 90.3 | |
| KOG2100 | 755 | consensus Dipeptidyl aminopeptidase [Posttranslati | 90.16 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 90.03 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 89.95 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 89.9 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 89.7 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 89.62 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 89.37 | |
| PLN02454 | 414 | triacylglycerol lipase | 89.31 | |
| PLN03016 | 433 | sinapoylglucose-malate O-sinapoyltransferase | 89.1 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 88.74 | |
| PF03959 | 212 | FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 | 88.65 | |
| PF11288 | 207 | DUF3089: Protein of unknown function (DUF3089); In | 88.54 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 88.5 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 88.41 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 88.38 | |
| PF05705 | 240 | DUF829: Eukaryotic protein of unknown function (DU | 88.14 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 87.93 | |
| KOG1214 | 1289 | consensus Nidogen and related basement membrane pr | 87.76 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 87.23 | |
| COG4814 | 288 | Uncharacterized protein with an alpha/beta hydrola | 86.71 | |
| PLN02408 | 365 | phospholipase A1 | 86.56 | |
| KOG1282 | 454 | consensus Serine carboxypeptidases (lysosomal cath | 86.55 | |
| cd00519 | 229 | Lipase_3 Lipase (class 3). Lipases are esterases t | 86.06 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 85.78 | |
| PLN02571 | 413 | triacylglycerol lipase | 85.71 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 85.57 | |
| PRK10252 | 1296 | entF enterobactin synthase subunit F; Provisional | 85.55 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 85.22 | |
| KOG3724 | 973 | consensus Negative regulator of COPII vesicle form | 85.16 | |
| PF04083 | 63 | Abhydro_lipase: Partial alpha/beta-hydrolase lipas | 84.99 | |
| KOG2931 | 326 | consensus Differentiation-related gene 1 protein ( | 84.83 | |
| PF10605 | 690 | 3HBOH: 3HB-oligomer hydrolase (3HBOH) ; InterPro: | 84.81 | |
| PRK13613 | 599 | lipoprotein LpqB; Provisional | 84.74 | |
| COG1075 | 336 | LipA Predicted acetyltransferases and hydrolases w | 84.72 | |
| PF05787 | 524 | DUF839: Bacterial protein of unknown function (DUF | 84.62 | |
| COG3946 | 456 | VirJ Type IV secretory pathway, VirJ component [In | 84.55 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 84.26 | |
| PLN02324 | 415 | triacylglycerol lipase | 84.19 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 84.12 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 84.11 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 83.6 | |
| TIGR01849 | 406 | PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, | 83.45 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 83.36 | |
| PLN02802 | 509 | triacylglycerol lipase | 82.9 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 82.6 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 82.58 |
| >COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-42 Score=380.00 Aligned_cols=532 Identities=19% Similarity=0.208 Sum_probs=348.3
Q ss_pred CcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCC
Q 005240 31 AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (706)
Q Consensus 31 ~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~ 110 (706)
..+..+..+|+|+.++|+.+.-+... ......+|+.+... .+.++.... ...+.|||||+.+++......
T Consensus 13 ~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~d~~~--~~~~~~~~~------~~~~~~spdg~~~~~~~~~~~- 82 (620)
T COG1506 13 ARVSDPRVSPPGGRLAYILTGLDFLK-PLYKSSLWVSDGKT--VRLLTFGGG------VSELRWSPDGSVLAFVSTDGG- 82 (620)
T ss_pred hcccCcccCCCCceeEEeeccccccc-cccccceEEEeccc--ccccccCCc------ccccccCCCCCEEEEEeccCC-
Confidence 35778999999999999987311111 24567899977554 444443332 678899999999999852111
Q ss_pred CCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCCCceecCCC-ceEeeeeeCCCCcEE
Q 005240 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTP-AVYTAVEPSPDQKYV 189 (706)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g~~~~lt~~-~~~~~~~~SpDG~~i 189 (706)
...++|+++.+| .++.. ..+....|+|+|+.+
T Consensus 83 --------------------------------------------~~~~l~l~~~~g---~~~~~~~~v~~~~~~~~g~~~ 115 (620)
T COG1506 83 --------------------------------------------RVAQLYLVDVGG---LITKTAFGVSDARWSPDGDRI 115 (620)
T ss_pred --------------------------------------------CcceEEEEecCC---ceeeeecccccceeCCCCCeE
Confidence 126889888875 22222 456788999999999
Q ss_pred EEEeeccCccccccc-------------cc-ccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCc
Q 005240 190 LITSMHRPYSYKVPC-------------AR-FSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPS 255 (706)
Q Consensus 190 ~~~~~~~~~~~~~~~-------------~~-~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~ 255 (706)
++...........-. .. ....+++++.++ ....+.... .....+.+.++++.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~d~~~-~~~~~~~~~-------------~~~~~~~~~~~~~~ 181 (620)
T COG1506 116 AFLTAEGASKRDGGDHLFVDRLPVWFDGRGGERSDLYVVDIES-KLIKLGLGN-------------LDVVSFATDGDGRL 181 (620)
T ss_pred EEEecccccccCCceeeeecccceeecCCCCcccceEEEccCc-ccccccCCC-------------CceeeeeeCCCCce
Confidence 983322211000000 00 112333444333 111111111 11113344444443
Q ss_pred eEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccc----cceEEEEEcC
Q 005240 256 TLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKT----SQTRTWLVCP 331 (706)
Q Consensus 256 ~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~----~~~~l~~~d~ 331 (706)
++.+.......... ...+.... .++.+..++.....+..+.|.+||+.+++...... ....++.++.
T Consensus 182 -~~~~~~~~~~~~~~-----~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~gk~~~~~~~~~~~~~~~~~~~~~~~~ 252 (620)
T COG1506 182 -VASIRLDDDADPWV-----TNLYVLIE---GNGELESLTPGEGSISKLAFDADGKSIALLGTESDRGLAEGDFILLLDG 252 (620)
T ss_pred -eEEeeeccccCCce-----EeeEEEec---CCCceEEEcCCCceeeeeeeCCCCCeeEEeccCCccCccccceEEEEec
Confidence 33332222212211 11222222 35667777777777899999999998877654322 2334555552
Q ss_pred CCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeee
Q 005240 332 GSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIW 411 (706)
Q Consensus 332 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~ 411 (706)
..+. .... ....+ . ..+.......-++..+++..... .....++.++..++. ..+.
T Consensus 253 ~~~~--~d~~--~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~-----------------~g~~~l~~~~~~~~~-~~~~ 308 (620)
T COG1506 253 ELGE--VDGD--LSSGD-D-TRGAWAVEGGLDGDGLLFIATDG-----------------GGSSPLFRVDDLGGG-VEGL 308 (620)
T ss_pred cccc--ccee--eccCC-c-ccCcHHhccccCCCcEEEEEecC-----------------CCceEEEEEeccCCc-eeee
Confidence 2211 1110 00000 0 00111111223444555444220 112234444433332 2222
Q ss_pred cccchhhhhhhhhhccCCCceecccCCCEEEEEEecCCCCcEEEEEECCCCceeEeecCCCCC-CCCCCCceEEEEEEcc
Q 005240 412 ESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPY-PTLASLQKEMIKYQRK 490 (706)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~p~~v~~~~~~~~~~~~lt~~~~~~-~~~~~~~~~~~~~~~~ 490 (706)
..+. .....|+.+++.+++.++++..|+++|+++. ++..+++..+... ......++|.+++++.
T Consensus 309 ~~~~-------------~~v~~f~~~~~~~~~~~s~~~~p~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 373 (620)
T COG1506 309 SGDD-------------GGVPGFDVDGRKLALAYSSPTEPPEIYLYDR--GEEAKLTSSNNSGLKKVKLAEPEPVTYKSN 373 (620)
T ss_pred cCCC-------------ceEEEEeeCCCEEEEEecCCCCccceEEEcC--CCceEEeecccccccccccCCceEEEEEcC
Confidence 2221 1245677799999999999999999999986 6666666655443 4566789999999999
Q ss_pred CCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCC
Q 005240 491 DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEG 570 (706)
Q Consensus 491 dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g 570 (706)
||.+|++|+++|+++++.|+ ||+||++||||+.. +. + .....+|.|+++||+|+.+|+||+.|||
T Consensus 374 dG~~i~~~l~~P~~~~~~k~--yP~i~~~hGGP~~~------~~--~-----~~~~~~q~~~~~G~~V~~~n~RGS~GyG 438 (620)
T COG1506 374 DGETIHGWLYKPPGFDPRKK--YPLIVYIHGGPSAQ------VG--Y-----SFNPEIQVLASAGYAVLAPNYRGSTGYG 438 (620)
T ss_pred CCCEEEEEEecCCCCCCCCC--CCEEEEeCCCCccc------cc--c-----ccchhhHHHhcCCeEEEEeCCCCCCccH
Confidence 99999999999999988764 99999999999641 21 1 1235679999999999999999999999
Q ss_pred CCCCch---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCCCCCC-----
Q 005240 571 DKLPND---RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLT----- 642 (706)
Q Consensus 571 ~~~~~~---~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d~~~~----- 642 (706)
++|... .++...++|++++++++.+++.+|++||+|+|+|||||||++++++.| +|+|+++.+++.++..+
T Consensus 439 ~~F~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~SyGGymtl~~~~~~~-~f~a~~~~~~~~~~~~~~~~~~ 517 (620)
T COG1506 439 REFADAIRGDWGGVDLEDLIAAVDALVKLPLVDPERIGITGGSYGGYMTLLAATKTP-RFKAAVAVAGGVDWLLYFGEST 517 (620)
T ss_pred HHHHHhhhhccCCccHHHHHHHHHHHHhCCCcChHHeEEeccChHHHHHHHHHhcCc-hhheEEeccCcchhhhhccccc
Confidence 998863 456678999999999999999999999999999999999999999996 99999999987664421
Q ss_pred -------------Cc----cc------------------------------hHHHHHHHHHhCCCcEEEEEeCCCCccCC
Q 005240 643 -------------PF----GF------------------------------QAERFFDALKGHGALSRLVLLPFEHHVYA 675 (706)
Q Consensus 643 -------------~~----~~------------------------------~~~~~~~~l~~~~~~~~~~~~~~~~H~~~ 675 (706)
+. .| |+++|+++|+.+|+++++++||+++|++.
T Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~LliHG~~D~~v~~~q~~~~~~aL~~~g~~~~~~~~p~e~H~~~ 597 (620)
T COG1506 518 EGLRFDPEENGGGPPEDREKYEDRSPIFYADNIKTPLLLIHGEEDDRVPIEQAEQLVDALKRKGKPVELVVFPDEGHGFS 597 (620)
T ss_pred hhhcCCHHHhCCCcccChHHHHhcChhhhhcccCCCEEEEeecCCccCChHHHHHHHHHHHHcCceEEEEEeCCCCcCCC
Confidence 11 01 33499999999999999999999999999
Q ss_pred CcccHHHHHHHHHHHHHHHhcc
Q 005240 676 ARENVMHVIWETDRWLQKYCLS 697 (706)
Q Consensus 676 ~~~~~~~~~~~~~~f~~~~l~~ 697 (706)
.+.++...++++++||++|++.
T Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~ 619 (620)
T COG1506 598 RPENRVKVLKEILDWFKRHLKQ 619 (620)
T ss_pred CchhHHHHHHHHHHHHHHHhcC
Confidence 9889999999999999999864
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-36 Score=333.77 Aligned_cols=521 Identities=12% Similarity=0.043 Sum_probs=332.4
Q ss_pred CCCCeEEEEeeccccccccCCceeEEEEEcC-C---CceeecccCCC---ccccccccceEEecCCcEEEEEecCCCCCC
Q 005240 40 PDGKRIAFSVRVDEEDNVSSCKLRVWIADAE-T---GEAKPLFESPD---ICLNAVFGSFVWVNNSTLLIFTIPSSRRDP 112 (706)
Q Consensus 40 PDG~~laf~~~~~~~~~~~~~~~~l~~~d~~-~---g~~~~lt~~~~---~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~ 112 (706)
..|.+++|..... ....-||..... + ++.+.|.+... ......+..+.|||||++|+|..+..+.+
T Consensus 79 ~~g~~~y~~~~~~------g~~~~~~~r~~~~~~~~~~~~~llD~n~~a~~~~~~~l~~~~~Spdg~~la~~~d~~G~E- 151 (686)
T PRK10115 79 IKNGYRYRHIYEP------GCEYAIYQRQSAFSEEWDEWETLLDANKRAAHSEFYTLGGMAITPDNTIMALAEDFLSRR- 151 (686)
T ss_pred EECCEEEEEEEcC------CCccEEEEEecCCCCCCCCCEEEEcchhhccCCCcEEEeEEEECCCCCEEEEEecCCCcE-
Confidence 4577877776421 223556655532 2 22233332111 00112245788999999999986543332
Q ss_pred CCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCC--ceecCCCceEeeeeeCCCCcEE
Q 005240 113 PKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT--AKDFGTPAVYTAVEPSPDQKYV 189 (706)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~--~~~lt~~~~~~~~~~SpDG~~i 189 (706)
..+|+++++ +|+ +..+.... ..++|++||+.|
T Consensus 152 -------------------------------------------~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~ 186 (686)
T PRK10115 152 -------------------------------------------QYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTF 186 (686)
T ss_pred -------------------------------------------EEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEE
Confidence 268999999 565 33343222 458999999999
Q ss_pred EEEeeccCcccccccccccceEEEEecCCC--eeEEcccCCCCCCCCcccCccCCCCcceeeec-CCCceEEEEEeccCC
Q 005240 190 LITSMHRPYSYKVPCARFSQKVQVWTTDGK--LVRELCDLPPAEDIPVCYNSVREGMRSISWRA-DKPSTLYWVEAQDRG 266 (706)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~sp-dg~~~l~~~~~~~~~ 266 (706)
+|+...... ....+++++++.+. +.+.|...... + ..-..|.+ |++. +. +....+.
T Consensus 187 ~y~~~~~~~-------~~~~~v~~h~lgt~~~~d~lv~~e~~~---~---------~~~~~~~s~d~~~-l~-i~~~~~~ 245 (686)
T PRK10115 187 YYVRKHPVT-------LLPYQVWRHTIGTPASQDELVYEEKDD---T---------FYVSLHKTTSKHY-VV-IHLASAT 245 (686)
T ss_pred EEEEecCCC-------CCCCEEEEEECCCChhHCeEEEeeCCC---C---------EEEEEEEcCCCCE-EE-EEEECCc
Confidence 999875311 11468999999977 44555443211 1 01113444 7776 44 3222221
Q ss_pred CCccccCccceeeeecCCCCCCCCceEEeec-ccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCc
Q 005240 267 DANVEVSPRDIIYTQPAEPAEGEKPEILHKL-DLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRV 345 (706)
Q Consensus 267 ~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~-~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~ 345 (706)
+ ..+++++++ +..++++.+... ......+. ..+..+++.++......+|..+++.+. .+.+.+....
T Consensus 246 ~--------~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~ly~~tn~~~~~~~l~~~~~~~~-~~~~~l~~~~ 313 (686)
T PRK10115 246 T--------SEVLLLDAE-LADAEPFVFLPRRKDHEYSLD--HYQHRFYLRSNRHGKNFGLYRTRVRDE-QQWEELIPPR 313 (686)
T ss_pred c--------ccEEEEECc-CCCCCceEEEECCCCCEEEEE--eCCCEEEEEEcCCCCCceEEEecCCCc-ccCeEEECCC
Confidence 1 235555541 133444444322 22222222 224566666655556778999998742 3344443321
Q ss_pred cc-ccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeeecccchhhhhhhhh
Q 005240 346 FE-NVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVA 424 (706)
Q Consensus 346 ~~-~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~ 424 (706)
-. .+. .+.++ +++|++.... .....|+.++..+++..+|...... .+
T Consensus 314 ~~~~i~------~~~~~--~~~l~~~~~~------------------~g~~~l~~~~~~~~~~~~l~~~~~~----~~-- 361 (686)
T PRK10115 314 ENIMLE------GFTLF--TDWLVVEERQ------------------RGLTSLRQINRKTREVIGIAFDDPA----YV-- 361 (686)
T ss_pred CCCEEE------EEEEE--CCEEEEEEEe------------------CCEEEEEEEcCCCCceEEecCCCCc----eE--
Confidence 10 110 12333 4566665532 2233577777765555555411110 00
Q ss_pred hccCCCceecc--cCCCEEEEEEecCCCCcEEEEEECCCCceeEeecCCCCCCCCCCCceEEEEEEccCCeEEEEEEEec
Q 005240 425 LVFGQGEEDIN--LNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTLASLQKEMIKYQRKDGVPLTATLYLP 502 (706)
Q Consensus 425 ~~~~~~~~~~s--~Dg~~l~~~~~~~~~p~~v~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~~~~dg~~i~~~l~~P 502 (706)
....++ +++..++++.++..+|+++|.+|+.+++.+.|+..+.+........+|.+++++.||.+|+++|++|
T Consensus 362 -----~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~~~~l~~~~~~~~~~~~~~~e~v~~~s~DG~~Ip~~l~~~ 436 (686)
T PRK10115 362 -----TWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGERRVLKQTEVPGFDAANYRSEHLWITARDGVEVPVSLVYH 436 (686)
T ss_pred -----eeecccCCCCCceEEEEEecCCCCCEEEEEECCCCcEEEEEecCCCCcCccccEEEEEEEECCCCCEEEEEEEEE
Confidence 011233 6678899999999999999999999998888887654322223569999999999999999977776
Q ss_pred CCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCCCCchh---hH
Q 005240 503 PGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDR---FV 579 (706)
Q Consensus 503 ~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~~---~~ 579 (706)
++... .++.|+||++||||..+ ....+....+.|+++||+|+.+|.||+.|||+.|.... +.
T Consensus 437 ~~~~~--~~~~P~ll~~hGg~~~~-------------~~p~f~~~~~~l~~rG~~v~~~n~RGs~g~G~~w~~~g~~~~k 501 (686)
T PRK10115 437 RKHFR--KGHNPLLVYGYGSYGAS-------------IDADFSFSRLSLLDRGFVYAIVHVRGGGELGQQWYEDGKFLKK 501 (686)
T ss_pred CCCCC--CCCCCEEEEEECCCCCC-------------CCCCccHHHHHHHHCCcEEEEEEcCCCCccCHHHHHhhhhhcC
Confidence 54322 23479999999997532 11112244678999999999999999999999887532 22
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCCCCC------CCcc--------
Q 005240 580 EQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTL------TPFG-------- 645 (706)
Q Consensus 580 ~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d~~~------~~~~-------- 645 (706)
...++|++++++||++++++|++||+|+|+|+||+|+++++.++|++|+|+|+.+|+.|+.. .|..
T Consensus 502 ~~~~~D~~a~~~~Lv~~g~~d~~rl~i~G~S~GG~l~~~~~~~~Pdlf~A~v~~vp~~D~~~~~~~~~~p~~~~~~~e~G 581 (686)
T PRK10115 502 KNTFNDYLDACDALLKLGYGSPSLCYGMGGSAGGMLMGVAINQRPELFHGVIAQVPFVDVVTTMLDESIPLTTGEFEEWG 581 (686)
T ss_pred CCcHHHHHHHHHHHHHcCCCChHHeEEEEECHHHHHHHHHHhcChhheeEEEecCCchhHhhhcccCCCCCChhHHHHhC
Confidence 25799999999999999999999999999999999999999999999999999999988431 1100
Q ss_pred -----------------------------------------chHHHHHHHHHhCCCcEEEEEe---CCCCccCCCc-ccH
Q 005240 646 -----------------------------------------FQAERFFDALKGHGALSRLVLL---PFEHHVYAAR-ENV 680 (706)
Q Consensus 646 -----------------------------------------~~~~~~~~~l~~~~~~~~~~~~---~~~~H~~~~~-~~~ 680 (706)
.++.+|+.+|++++++.++++| +++||+.... ...
T Consensus 582 ~p~~~~~~~~l~~~SP~~~v~~~~~P~lLi~~g~~D~RV~~~~~~k~~a~Lr~~~~~~~~vl~~~~~~~GHg~~~~r~~~ 661 (686)
T PRK10115 582 NPQDPQYYEYMKSYSPYDNVTAQAYPHLLVTTGLHDSQVQYWEPAKWVAKLRELKTDDHLLLLCTDMDSGHGGKSGRFKS 661 (686)
T ss_pred CCCCHHHHHHHHHcCchhccCccCCCceeEEecCCCCCcCchHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCcCHHHH
Confidence 1233999999999999999999 9999985322 223
Q ss_pred HHHHHHHHHHHHHHhcc
Q 005240 681 MHVIWETDRWLQKYCLS 697 (706)
Q Consensus 681 ~~~~~~~~~f~~~~l~~ 697 (706)
.+.....+.|+-..+..
T Consensus 662 ~~~~A~~~aFl~~~~~~ 678 (686)
T PRK10115 662 YEGVAMEYAFLIALAQG 678 (686)
T ss_pred HHHHHHHHHHHHHHhCC
Confidence 44455568888887654
|
|
| >KOG2281 consensus Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-34 Score=288.41 Aligned_cols=293 Identities=18% Similarity=0.237 Sum_probs=229.2
Q ss_pred CcceEEEEecCCCCCCCCCCceeeeecC-CCceeeeecccchhhhhhhhhhccCCCceecccCCCEEEEEEecCCCCcEE
Q 005240 376 DEQIYILLNGRGFTPEGNIPFLDLFDIN-TGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQY 454 (706)
Q Consensus 376 ~~~~~~~~~~~g~~~~~~~~~l~~~d~~-~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~p~~v 454 (706)
.....+|+.+.-.+| -..+|+.+... .|++.+++...-. +...++.+=+.++.-+++...|+.+
T Consensus 513 E~~~LVYf~gt~d~P--lE~hLyvvsye~~g~~~rlt~~g~s-------------h~~~l~~~~d~fv~~~~sv~sP~cv 577 (867)
T KOG2281|consen 513 EVRKLVYFVGTKDTP--LEHHLYVVSYENPGEIARLTEPGYS-------------HSCELDQQCDHFVSYYSSVGSPPCV 577 (867)
T ss_pred ccceEEEEEccCCCC--ceeeEEEEEEecCCceeeccCCCcc-------------cchhhhhhhhhHhhhhhcCCCCceE
Confidence 456778887654443 34568888877 7888888765421 1223444444577788899999999
Q ss_pred EEEECCCCceeEeecC----C----CCCCCCCCCceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCC
Q 005240 455 HILSWPLKKSSQITNF----P----HPYPTLASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKS 526 (706)
Q Consensus 455 ~~~~~~~~~~~~lt~~----~----~~~~~~~~~~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~ 526 (706)
.++.+.+++...+-.. + ...+..+...+|.+.+++..|..+.|.+|+|.+|+++++ ||+++++||||..
T Consensus 578 ~~y~ls~~~~~~l~~q~~~~~~l~~~~~~~Pdy~p~eif~fqs~tg~~lYgmiyKPhn~~pgkk--Yptvl~VYGGP~V- 654 (867)
T KOG2281|consen 578 SLYSLSWPENDPLPKQVSFWAILVSGAPPPPDYVPPEIFSFQSKTGLTLYGMIYKPHNFQPGKK--YPTVLNVYGGPGV- 654 (867)
T ss_pred EEEeccCCccCcccchhhHHHHHHhcCCCCCccCChhheeeecCCCcEEEEEEEccccCCCCCC--CceEEEEcCCCce-
Confidence 9998877543333211 0 001223345668899999889999999999999999884 9999999999953
Q ss_pred cCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCCCCc---hhhHHHHHHHHHHHHHHHHHc-CCCCCC
Q 005240 527 KDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPN---DRFVEQLVSSAEAAVEEVVRR-GVADPS 602 (706)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~---~~~~~~~~~D~~~~~~~l~~~-~~id~~ 602 (706)
|.|.+ +|....+...+.|+++||+|+..+.||+.-+|.+|.. ..++.-.++|+..++++|+++ ++||.+
T Consensus 655 ----QlVnn---sfkgi~ylR~~~LaslGy~Vv~IDnRGS~hRGlkFE~~ik~kmGqVE~eDQVeglq~Laeq~gfidmd 727 (867)
T KOG2281|consen 655 ----QLVNN---SFKGIQYLRFCRLASLGYVVVFIDNRGSAHRGLKFESHIKKKMGQVEVEDQVEGLQMLAEQTGFIDMD 727 (867)
T ss_pred ----EEeec---cccceehhhhhhhhhcceEEEEEcCCCccccchhhHHHHhhccCeeeehhhHHHHHHHHHhcCcccch
Confidence 55554 4555566778899999999999999999888887764 344556699999999999998 699999
Q ss_pred cEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCCCCCCCcc---------------ch--------------------
Q 005240 603 RIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFG---------------FQ-------------------- 647 (706)
Q Consensus 603 ~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d~~~~~~~---------------~~-------------------- 647 (706)
||+|.||||||||+++.++++|+.|+|+|+.+|+.+|.+.... |.
T Consensus 728 rV~vhGWSYGGYLSlm~L~~~P~IfrvAIAGapVT~W~~YDTgYTERYMg~P~~nE~gY~agSV~~~VeklpdepnRLlL 807 (867)
T KOG2281|consen 728 RVGVHGWSYGGYLSLMGLAQYPNIFRVAIAGAPVTDWRLYDTGYTERYMGYPDNNEHGYGAGSVAGHVEKLPDEPNRLLL 807 (867)
T ss_pred heeEeccccccHHHHHHhhcCcceeeEEeccCcceeeeeecccchhhhcCCCccchhcccchhHHHHHhhCCCCCceEEE
Confidence 9999999999999999999999999999999999887642111 10
Q ss_pred -------------HHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 005240 648 -------------AERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQK 693 (706)
Q Consensus 648 -------------~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~~~ 693 (706)
-..+..+|.++|++.++++||++.|++.+++...+.-.+++.|+++
T Consensus 808 vHGliDENVHF~Hts~Lvs~lvkagKpyeL~IfP~ERHsiR~~es~~~yE~rll~FlQ~ 866 (867)
T KOG2281|consen 808 VHGLIDENVHFAHTSRLVSALVKAGKPYELQIFPNERHSIRNPESGIYYEARLLHFLQE 866 (867)
T ss_pred EecccccchhhhhHHHHHHHHHhCCCceEEEEccccccccCCCccchhHHHHHHHHHhh
Confidence 0199999999999999999999999999999999999999999986
|
|
| >KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-26 Score=259.58 Aligned_cols=346 Identities=21% Similarity=0.224 Sum_probs=231.3
Q ss_pred ceecCCCceE-EEEeeccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEeeeccCCcceEEE
Q 005240 304 VSWCDDSLAL-VNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYIL 382 (706)
Q Consensus 304 ~~wspDg~~l-~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~ 382 (706)
+.++.|+... ++.....++..++..+....+. +++.++.+...-. ..+.++.+..+++|.....
T Consensus 345 ~~~~~d~~~~~~~~~~~~~~~~hi~~~~~~~~~-~~~~lt~g~w~v~------~i~~~~~~~~~i~f~~~~~-------- 409 (755)
T KOG2100|consen 345 PVFSSDGSSYLKVDSVSDGGYNHIAYLKLSNGS-EPRMLTSGNWEVT------SILGYDKDSNRIYFDAYEE-------- 409 (755)
T ss_pred ceEeecCCceeEEEeeccCCEEEEEEEEcCCCC-ccccccccceEEE------EeccccCCCceEEEEecCC--------
Confidence 4455565333 3322222225566666655532 3444433222110 0122346777777765321
Q ss_pred EecCCCCCCCCCCceeeeecCCCceeeeecccchhhhhhhhhhccCCCceecccCCCEEEEEEecCCCCcE-EEEEECCC
Q 005240 383 LNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQ-YHILSWPL 461 (706)
Q Consensus 383 ~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~p~~-v~~~~~~~ 461 (706)
+...++|+.+++.++..+.++-.... +.. ...++++++..+.++.....++.|.. +-+.....
T Consensus 410 --------~~~~~~ly~i~~~~~~~~~lt~~~~~---~~~-----~~~~~~~~~~~~~~v~~~~gP~~p~~~~~~~~~~~ 473 (755)
T KOG2100|consen 410 --------DPSERHLYSISLGSGTVESLTCSLIT---GPC-----TYLSVSFSKSAKYYVLSCSGPKVPDGQLTRHSSKN 473 (755)
T ss_pred --------CCCceEEEEEEccccccccccccCCC---Ccc-----eEEEEecCCcccEEEEEccCCCCCcceeecccccc
Confidence 23456788899887766665433211 000 11246777778888888777766643 22222111
Q ss_pred Cc-eeEeecCCCCCCC----CCCCceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCC
Q 005240 462 KK-SSQITNFPHPYPT----LASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGS 536 (706)
Q Consensus 462 ~~-~~~lt~~~~~~~~----~~~~~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~ 536 (706)
.+ ...|. .|....+ ......+..++.- ||......+++|++|++++ ++|+||.+||||.+ +.+...
T Consensus 474 ~~~~~~Le-~n~~~~~~~~~~~~p~~~~~~i~~-~~~~~~~~~~lP~~~~~~~--kyPllv~~yGGP~s-----q~v~~~ 544 (755)
T KOG2100|consen 474 SKTIVVLE-TNEELKKTIENVALPIVEFGKIEI-DGITANAILILPPNFDPSK--KYPLLVVVYGGPGS-----QSVTSK 544 (755)
T ss_pred ceEEEEec-cChhhHHHhhcccCCcceeEEEEe-ccEEEEEEEecCCCCCCCC--CCCEEEEecCCCCc-----ceeeee
Confidence 12 22222 2333321 2223344444443 8999999999999999887 59999999999852 233322
Q ss_pred CCCcCCCCchHHHH-HHHCCeEEEEcCCCCcCCCCCCCCc---hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechH
Q 005240 537 PNEFSGMTPTSSLI-FLARRFAVLAGPSIPIIGEGDKLPN---DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYG 612 (706)
Q Consensus 537 ~~~~~~~~~~~~~~-l~~~G~~v~~~~~~~~~g~g~~~~~---~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~G 612 (706)
+ ...+... +..+|++|+..++||+.|+|..+.. ...+...++|++.+++++++.+++|++||+|||+|||
T Consensus 545 ~------~~~~~~~~~s~~g~~v~~vd~RGs~~~G~~~~~~~~~~lG~~ev~D~~~~~~~~~~~~~iD~~ri~i~GwSyG 618 (755)
T KOG2100|consen 545 F------SVDWNEVVVSSRGFAVLQVDGRGSGGYGWDFRSALPRNLGDVEVKDQIEAVKKVLKLPFIDRSRVAIWGWSYG 618 (755)
T ss_pred E------EecHHHHhhccCCeEEEEEcCCCcCCcchhHHHHhhhhcCCcchHHHHHHHHHHHhcccccHHHeEEeccChH
Confidence 1 1233433 4569999999999999999998764 3455568999999999999999999999999999999
Q ss_pred HHHHHHHHHhCC-CceeEEEeccCCCCCCCC-----------Cc----cc------------------------------
Q 005240 613 AFMTAHLLAHAP-HLFCCGIARSGSYNKTLT-----------PF----GF------------------------------ 646 (706)
Q Consensus 613 G~~a~~~~~~~p-~~~~a~v~~~~~~d~~~~-----------~~----~~------------------------------ 646 (706)
|||+++++..+| +.|+|+++++|++|+.+. |. .|
T Consensus 619 Gy~t~~~l~~~~~~~fkcgvavaPVtd~~~yds~~terymg~p~~~~~~y~e~~~~~~~~~~~~~~~LliHGt~DdnVh~ 698 (755)
T KOG2100|consen 619 GYLTLKLLESDPGDVFKCGVAVAPVTDWLYYDSTYTERYMGLPSENDKGYEESSVSSPANNIKTPKLLLIHGTEDDNVHF 698 (755)
T ss_pred HHHHHHHhhhCcCceEEEEEEecceeeeeeecccccHhhcCCCccccchhhhccccchhhhhccCCEEEEEcCCcCCcCH
Confidence 999999999997 789999999999987631 10 01
Q ss_pred -hHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHh
Q 005240 647 -QAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYC 695 (706)
Q Consensus 647 -~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~~~~l 695 (706)
++.+++++|+.+|+++++++||+++|+++......+++..+..||...+
T Consensus 699 q~s~~~~~aL~~~gv~~~~~vypde~H~is~~~~~~~~~~~~~~~~~~~~ 748 (755)
T KOG2100|consen 699 QQSAILIKALQNAGVPFRLLVYPDENHGISYVEVISHLYEKLDRFLRDCF 748 (755)
T ss_pred HHHHHHHHHHHHCCCceEEEEeCCCCcccccccchHHHHHHHHHHHHHHc
Confidence 1229999999999999999999999999988778899999999999433
|
|
| >COG1770 PtrB Protease II [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-21 Score=204.18 Aligned_cols=468 Identities=15% Similarity=0.109 Sum_probs=283.4
Q ss_pred CCCCeEEEEeeccccccccCCceeEEEEE-cCCCc-eeecccCCCcccc---ccccceEEecCCcEEEEEecCCCCCCCC
Q 005240 40 PDGKRIAFSVRVDEEDNVSSCKLRVWIAD-AETGE-AKPLFESPDICLN---AVFGSFVWVNNSTLLIFTIPSSRRDPPK 114 (706)
Q Consensus 40 PDG~~laf~~~~~~~~~~~~~~~~l~~~d-~~~g~-~~~lt~~~~~~~~---~~~~~~~wSpDg~~l~~~~~~~~~~~~~ 114 (706)
.+|.+-+|.+..+ ....-+|..- .+++. .+.|.+....... ..+..+.-|||+++|++..+..+.+
T Consensus 83 ~~~~~~Yy~r~~~------g~~y~~~~R~~~~g~~~eevlLD~n~~A~g~~f~~Lg~~~~s~D~~~la~s~D~~G~e--- 153 (682)
T COG1770 83 RKGPYEYYSRTEE------GKEYPIYCRQPDEGGEGEEVLLDVNKEAEGHDFFSLGAASISPDHNLLAYSVDVLGDE--- 153 (682)
T ss_pred ccCCeeEEEEecC------CCcceeEEeccCCCCCceeEeecchhccCcccceeeeeeeeCCCCceEEEEEeccccc---
Confidence 5788888877531 2233445442 34444 3444332211111 1134667899999999986543322
Q ss_pred CCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCCceecCCCceEeeeeeCCCCcEEEEEe
Q 005240 115 KTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTPAVYTAVEPSPDQKYVLITS 193 (706)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~~~lt~~~~~~~~~~SpDG~~i~~~~ 193 (706)
+-.|...++ +|+...-.-.+....++|.+|++.++|+.
T Consensus 154 -----------------------------------------~y~lr~kdL~tg~~~~d~i~~~~~~~~Wa~d~~~lfYt~ 192 (682)
T COG1770 154 -----------------------------------------QYTLRFKDLATGEELPDEITNTSGSFAWAADGKTLFYTR 192 (682)
T ss_pred -----------------------------------------EEEEEEEecccccccchhhcccccceEEecCCCeEEEEE
Confidence 145666777 66322221113456899999999999998
Q ss_pred eccCcccccccccccceEEEEecCC--CeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccc
Q 005240 194 MHRPYSYKVPCARFSQKVQVWTTDG--KLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVE 271 (706)
Q Consensus 194 ~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~ 271 (706)
...... +..++...+.+ ..-+.+..... +.++. .+.-|.+.+. |+ +...+
T Consensus 193 ~d~~~r--------p~kv~~h~~gt~~~~d~lvyeE~d----~~f~~-------~v~~s~s~~y-i~-i~~~~------- 244 (682)
T COG1770 193 LDENHR--------PDKVWRHRLGTPGSSDELVYEEKD----DRFFL-------SVGRSRSEAY-IV-ISLGS------- 244 (682)
T ss_pred EcCCCC--------cceEEEEecCCCCCcceEEEEcCC----CcEEE-------EeeeccCCce-EE-EEcCC-------
Confidence 875432 46788877775 43333433221 11111 1222333333 33 21111
Q ss_pred cCccceeeeecCCCCCCCCceEEeec-ccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCcccccc
Q 005240 272 VSPRDIIYTQPAEPAEGEKPEILHKL-DLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVY 350 (706)
Q Consensus 272 ~~~~~~l~~~d~~~~~~~~~~~l~~~-~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~ 350 (706)
....++++++++ ..+.+++.+..- .+....+.- -|..+++.++.++.+-+|+...+.......+.+. .
T Consensus 245 -~~tsE~~ll~a~-~p~~~p~vv~pr~~g~eY~~eh--~~d~f~i~sN~~gknf~l~~ap~~~~~~~w~~~I-------~ 313 (682)
T COG1770 245 -HITSEVRLLDAD-DPEAEPKVVLPRENGVEYSVEH--GGDRFYILSNADGKNFKLVRAPVSADKSNWRELI-------P 313 (682)
T ss_pred -CcceeEEEEecC-CCCCceEEEEEcCCCcEEeeee--cCcEEEEEecCCCcceEEEEccCCCChhcCeeee-------c
Confidence 123357788773 133445554432 233222221 2566777666665566788777621111112221 1
Q ss_pred cCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeeecccchhhhhhhhhhccCCC
Q 005240 351 SDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQG 430 (706)
Q Consensus 351 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~ 430 (706)
..++...-.++--.++|+.... ++..+.++..+.++|+...|.-.+.. ....+
T Consensus 314 h~~~~~l~~~~~f~~~lVl~eR------------------~~glp~v~v~~~~~~~~~~i~f~~~a----y~~~l----- 366 (682)
T COG1770 314 HREDVRLEGVDLFADHLVLLER------------------QEGLPRVVVRDRKTGEERGIAFDDEA----YSAGL----- 366 (682)
T ss_pred cCCCceeeeeeeeccEEEEEec------------------ccCCceEEEEecCCCceeeEEecchh----hhccc-----
Confidence 1112222223334445544432 13456788888888876554322221 01111
Q ss_pred ceecccCCCEEEEEEecCCCCcEEEEEECCCCceeEeecCCCCC-CCCCCCceEEEEEEccCCeEEEEEEEecCCCCCCC
Q 005240 431 EEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPY-PTLASLQKEMIKYQRKDGVPLTATLYLPPGYDQSK 509 (706)
Q Consensus 431 ~~~~s~Dg~~l~~~~~~~~~p~~v~~~~~~~~~~~~lt~~~~~~-~~~~~~~~~~~~~~~~dg~~i~~~l~~P~~~~~~~ 509 (706)
..+--.|..+|.+.+++.+.|.+++-+|+.+++.+.|...+.+- -.......+.+..++.||+.||..|+.-+++. .
T Consensus 367 ~~~~e~~s~~lR~~ysS~ttP~~~~~~dm~t~er~~LkqqeV~~g~dp~~Y~s~riwa~a~dgv~VPVSLvyrkd~~--~ 444 (682)
T COG1770 367 SGNPEFDSDRLRYSYSSMTTPATLFDYDMATGERTLLKQQEVPGGFDPEDYVSRRIWATADDGVQVPVSLVYRKDTK--L 444 (682)
T ss_pred cCCCCCCCccEEEEeecccccceeEEeeccCCcEEEEEeccCCCCCChhHeEEEEEEEEcCCCcEeeEEEEEecccC--C
Confidence 11223456789999999999999999999999999998754332 12345688999999899999999999988743 3
Q ss_pred CCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCCCCchh-hHH--HHHHHH
Q 005240 510 DGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDR-FVE--QLVSSA 586 (706)
Q Consensus 510 ~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~~-~~~--~~~~D~ 586 (706)
.++.|+||+.||..-. .-+..|+ .....|+.+||+-...+.||+.-.|+.|.... ..+ .-+.|+
T Consensus 445 ~g~~p~lLygYGaYG~---------s~~p~Fs----~~~lSLlDRGfiyAIAHVRGGgelG~~WYe~GK~l~K~NTf~DF 511 (682)
T COG1770 445 DGSAPLLLYGYGAYGI---------SMDPSFS----IARLSLLDRGFVYAIAHVRGGGELGRAWYEDGKLLNKKNTFTDF 511 (682)
T ss_pred CCCCcEEEEEeccccc---------cCCcCcc----cceeeeecCceEEEEEEeecccccChHHHHhhhhhhccccHHHH
Confidence 4568999999997421 1122232 22345788999877666676655666655321 111 348999
Q ss_pred HHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCC
Q 005240 587 EAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYN 638 (706)
Q Consensus 587 ~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d 638 (706)
+++.++|+++++.++++|+++|+|+||+|+..++...|++|+++|+..|..|
T Consensus 512 Ia~a~~Lv~~g~~~~~~i~a~GGSAGGmLmGav~N~~P~lf~~iiA~VPFVD 563 (682)
T COG1770 512 IAAARHLVKEGYTSPDRIVAIGGSAGGMLMGAVANMAPDLFAGIIAQVPFVD 563 (682)
T ss_pred HHHHHHHHHcCcCCccceEEeccCchhHHHHHHHhhChhhhhheeecCCccc
Confidence 9999999999999999999999999999999999999999999999999876
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-23 Score=224.10 Aligned_cols=265 Identities=16% Similarity=0.170 Sum_probs=184.7
Q ss_pred ceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcE--EEEEecCCCCCC
Q 005240 35 FVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTL--LIFTIPSSRRDP 112 (706)
Q Consensus 35 ~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~--l~~~~~~~~~~~ 112 (706)
.+.++ +++|||+....+...+ ....+||++|.+|+..++||..... ..+|.|||||+. ++|.+...
T Consensus 141 ~~g~~--~~~iayv~~~~~~~~~-~~~~~l~~~d~dG~~~~~lt~~~~~-----~~sP~wSPDG~~~~~~y~S~~~---- 208 (428)
T PRK01029 141 VPGIS--SGKIIFSLSTTNSDTE-LKQGELWSVDYDGQNLRPLTQEHSL-----SITPTWMHIGSGFPYLYVSYKL---- 208 (428)
T ss_pred CCccc--cCEEEEEEeeCCcccc-cccceEEEEcCCCCCceEcccCCCC-----cccceEccCCCceEEEEEEccC----
Confidence 35556 9999999874322211 2357999999999999999976543 468999999986 44565321
Q ss_pred CCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCC-CceecCCC-ceEeeeeeCCCCcEEE
Q 005240 113 PKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TAKDFGTP-AVYTAVEPSPDQKYVL 190 (706)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g-~~~~lt~~-~~~~~~~~SpDG~~i~ 190 (706)
+..+||+++++| +.++|+.. +....++|||||++|+
T Consensus 209 ------------------------------------------g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~La 246 (428)
T PRK01029 209 ------------------------------------------GVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLA 246 (428)
T ss_pred ------------------------------------------CCceEEEEECCCCCceEeecCCCCccceEECCCCCEEE
Confidence 126899999954 88888876 5566899999999999
Q ss_pred EEeeccCcccccccccccceEEE--EecCC---CeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccC
Q 005240 191 ITSMHRPYSYKVPCARFSQKVQV--WTTDG---KLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDR 265 (706)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~i~~--~~~~~---~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~ 265 (706)
|++...+. .++++ +++.+ ++.++++...... ...+.|||||+. |+|++..++
T Consensus 247 f~s~~~g~----------~di~~~~~~~~~g~~g~~~~lt~~~~~~------------~~~p~wSPDG~~-Laf~s~~~g 303 (428)
T PRK01029 247 FISDRYGN----------PDLFIQSFSLETGAIGKPRRLLNEAFGT------------QGNPSFSPDGTR-LVFVSNKDG 303 (428)
T ss_pred EEECCCCC----------cceeEEEeecccCCCCcceEeecCCCCC------------cCCeEECCCCCE-EEEEECCCC
Confidence 99865331 35555 45553 4566776543110 125689999998 888864432
Q ss_pred CCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCc
Q 005240 266 GDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRV 345 (706)
Q Consensus 266 ~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~ 345 (706)
. ..||+++++ ..++..++|+........+.|||||+.|+|..... +..+||++|++++ +.+.++...
T Consensus 304 -~--------~~ly~~~~~-~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~-g~~~I~v~dl~~g--~~~~Lt~~~ 370 (428)
T PRK01029 304 -R--------PRIYIMQID-PEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIK-GVRQICVYDLATG--RDYQLTTSP 370 (428)
T ss_pred -C--------ceEEEEECc-ccccceEEeccCCCCccceeECCCCCEEEEEEcCC-CCcEEEEEECCCC--CeEEccCCC
Confidence 1 248888772 12355677876666778899999999999986443 4568999999984 466665432
Q ss_pred ccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeeeccc
Q 005240 346 FENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESN 414 (706)
Q Consensus 346 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~ 414 (706)
.. ...+.|+|||++|++.... .....|+.+++++++.++|+...
T Consensus 371 ~~-------~~~p~wSpDG~~L~f~~~~------------------~g~~~L~~vdl~~g~~~~Lt~~~ 414 (428)
T PRK01029 371 EN-------KESPSWAIDSLHLVYSAGN------------------SNESELYLISLITKKTRKIVIGS 414 (428)
T ss_pred CC-------ccceEECCCCCEEEEEECC------------------CCCceEEEEECCCCCEEEeecCC
Confidence 11 1237899999999987632 12236889999999888887543
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.8e-24 Score=225.60 Aligned_cols=237 Identities=14% Similarity=0.113 Sum_probs=174.0
Q ss_pred ccceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCe--EEEEeeccccccccCCceeEEEEEcCCCceeecccCC
Q 005240 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKR--IAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESP 81 (706)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~--laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~ 81 (706)
...|++.|.+. +..++||. .......|+|||||++ ++|++.+ ++..+||++++++|+.++|+..+
T Consensus 164 ~~~l~~~d~dG----~~~~~lt~--~~~~~~sP~wSPDG~~~~~~y~S~~-------~g~~~I~~~~l~~g~~~~lt~~~ 230 (428)
T PRK01029 164 QGELWSVDYDG----QNLRPLTQ--EHSLSITPTWMHIGSGFPYLYVSYK-------LGVPKIFLGSLENPAGKKILALQ 230 (428)
T ss_pred cceEEEEcCCC----CCceEccc--CCCCcccceEccCCCceEEEEEEcc-------CCCceEEEEECCCCCceEeecCC
Confidence 45788888866 89999984 2334789999999998 5567653 56789999999999999998766
Q ss_pred CccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEE
Q 005240 82 DICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (706)
Q Consensus 82 ~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~ 161 (706)
+. ...+.|||||++|+|.+...+ ..++|+
T Consensus 231 g~-----~~~p~wSPDG~~Laf~s~~~g----------------------------------------------~~di~~ 259 (428)
T PRK01029 231 GN-----QLMPTFSPRKKLLAFISDRYG----------------------------------------------NPDLFI 259 (428)
T ss_pred CC-----ccceEECCCCCEEEEEECCCC----------------------------------------------CcceeE
Confidence 53 457899999999999864211 124444
Q ss_pred E--cc-C---CCceecCCC--ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecC--CCeeEEcccCCCCC
Q 005240 162 G--SL-D---GTAKDFGTP--AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD--GKLVRELCDLPPAE 231 (706)
Q Consensus 162 ~--~l-~---g~~~~lt~~--~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~l~~~~~~~ 231 (706)
. ++ . |++++++.. .....++|||||++|+|++.... ..+||+++++ ++..++|+.....
T Consensus 260 ~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g----------~~~ly~~~~~~~g~~~~~lt~~~~~- 328 (428)
T PRK01029 260 QSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDG----------RPRIYIMQIDPEGQSPRLLTKKYRN- 328 (428)
T ss_pred EEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCC----------CceEEEEECcccccceEEeccCCCC-
Confidence 3 44 2 366778765 34467899999999999886532 2479998886 3456677654322
Q ss_pred CCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCc
Q 005240 232 DIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSL 311 (706)
Q Consensus 232 ~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~ 311 (706)
...+.|||||+. |+|+....+ ...|+++|+ ++++.++|+........+.|+|||+
T Consensus 329 ------------~~~p~wSPDG~~-Laf~~~~~g---------~~~I~v~dl---~~g~~~~Lt~~~~~~~~p~wSpDG~ 383 (428)
T PRK01029 329 ------------SSCPAWSPDGKK-IAFCSVIKG---------VRQICVYDL---ATGRDYQLTTSPENKESPSWAIDSL 383 (428)
T ss_pred ------------ccceeECCCCCE-EEEEEcCCC---------CcEEEEEEC---CCCCeEEccCCCCCccceEECCCCC
Confidence 225589999998 888754322 125899998 7888899987666678899999999
Q ss_pred eEEEEeeccccceEEEEEcCCCCCCCceeeec
Q 005240 312 ALVNETWYKTSQTRTWLVCPGSKDVAPRVLFD 343 (706)
Q Consensus 312 ~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~ 343 (706)
.|+|..... +...||.+|++++ +.+.|+.
T Consensus 384 ~L~f~~~~~-g~~~L~~vdl~~g--~~~~Lt~ 412 (428)
T PRK01029 384 HLVYSAGNS-NESELYLISLITK--KTRKIVI 412 (428)
T ss_pred EEEEEECCC-CCceEEEEECCCC--CEEEeec
Confidence 999876443 4578999999984 4566654
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.5e-23 Score=221.64 Aligned_cols=235 Identities=15% Similarity=0.130 Sum_probs=177.6
Q ss_pred cccceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCC
Q 005240 3 FFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD 82 (706)
Q Consensus 3 ~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~ 82 (706)
+...|++.|.+. +..++++. ....+..|+|||||++|||++.. .+..+||++++++|+.++++..++
T Consensus 177 ~~~~l~~~d~dg----~~~~~lt~--~~~~~~~p~wSPDG~~la~~s~~-------~g~~~i~i~dl~~G~~~~l~~~~~ 243 (429)
T PRK03629 177 FPYELRVSDYDG----YNQFVVHR--SPQPLMSPAWSPDGSKLAYVTFE-------SGRSALVIQTLANGAVRQVASFPR 243 (429)
T ss_pred cceeEEEEcCCC----CCCEEeec--CCCceeeeEEcCCCCEEEEEEec-------CCCcEEEEEECCCCCeEEccCCCC
Confidence 356788888866 78888874 23358899999999999998742 456799999999999999986654
Q ss_pred ccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEE
Q 005240 83 ICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLG 162 (706)
Q Consensus 83 ~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~ 162 (706)
. ...+.|||||+.|+|..... +..+||++
T Consensus 244 ~-----~~~~~~SPDG~~La~~~~~~----------------------------------------------g~~~I~~~ 272 (429)
T PRK03629 244 H-----NGAPAFSPDGSKLAFALSKT----------------------------------------------GSLNLYVM 272 (429)
T ss_pred C-----cCCeEECCCCCEEEEEEcCC----------------------------------------------CCcEEEEE
Confidence 3 56789999999999975311 12579999
Q ss_pred ccC-CCceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCcc
Q 005240 163 SLD-GTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240 (706)
Q Consensus 163 ~l~-g~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~ 240 (706)
+++ |+.++++.. .....+.|||||++|+|++.+.. ..+||++++++++.++++.....
T Consensus 273 d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g----------~~~Iy~~d~~~g~~~~lt~~~~~---------- 332 (429)
T PRK03629 273 DLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAG----------RPQVYKVNINGGAPQRITWEGSQ---------- 332 (429)
T ss_pred ECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCC----------CceEEEEECCCCCeEEeecCCCC----------
Confidence 994 588888877 56678999999999999987542 24899999998888888654221
Q ss_pred CCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeecc
Q 005240 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYK 320 (706)
Q Consensus 241 ~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~ 320 (706)
...+.|||||+. |+++....+ ...|+++|+ ++++.+.|+.. .....|.|||||+.|++.+...
T Consensus 333 ---~~~~~~SpDG~~-Ia~~~~~~g---------~~~I~~~dl---~~g~~~~Lt~~-~~~~~p~~SpDG~~i~~~s~~~ 395 (429)
T PRK03629 333 ---NQDADVSSDGKF-MVMVSSNGG---------QQHIAKQDL---ATGGVQVLTDT-FLDETPSIAPNGTMVIYSSSQG 395 (429)
T ss_pred ---ccCEEECCCCCE-EEEEEccCC---------CceEEEEEC---CCCCeEEeCCC-CCCCCceECCCCCEEEEEEcCC
Confidence 125689999998 877653221 124888998 77888888743 3456899999999999987544
Q ss_pred ccceEEEEEcCCCCCCCceee
Q 005240 321 TSQTRTWLVCPGSKDVAPRVL 341 (706)
Q Consensus 321 ~~~~~l~~~d~~~~~~~~~~l 341 (706)
+...|+++++++. ..+.|
T Consensus 396 -~~~~l~~~~~~G~--~~~~l 413 (429)
T PRK03629 396 -MGSVLNLVSTDGR--FKARL 413 (429)
T ss_pred -CceEEEEEECCCC--CeEEC
Confidence 4567999999873 34445
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.9e-23 Score=219.68 Aligned_cols=254 Identities=15% Similarity=0.174 Sum_probs=185.2
Q ss_pred CCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCC
Q 005240 42 GKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLG 121 (706)
Q Consensus 42 G~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~ 121 (706)
..+|||++.... ......+||++|.+++..+++|.+... +..+.|||||++|+|.+...
T Consensus 165 ~~~iafv~~~~~---~~~~~~~l~~~d~dg~~~~~lt~~~~~-----v~~p~wSpDG~~lay~s~~~------------- 223 (435)
T PRK05137 165 DTRIVYVAESGP---KNKRIKRLAIMDQDGANVRYLTDGSSL-----VLTPRFSPNRQEITYMSYAN------------- 223 (435)
T ss_pred CCeEEEEEeeCC---CCCcceEEEEECCCCCCcEEEecCCCC-----eEeeEECCCCCEEEEEEecC-------------
Confidence 568999986311 001257999999999999999866543 67899999999999986421
Q ss_pred CceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCCceecCCC-ceEeeeeeCCCCcEEEEEeeccCcc
Q 005240 122 PKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYS 199 (706)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~ 199 (706)
+..+||++++ +|+.++++.. +....++|||||++|+|+.....
T Consensus 224 ---------------------------------g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g-- 268 (435)
T PRK05137 224 ---------------------------------GRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGG-- 268 (435)
T ss_pred ---------------------------------CCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCC--
Confidence 1268999999 5577888765 56678999999999999876532
Q ss_pred cccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceee
Q 005240 200 YKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIY 279 (706)
Q Consensus 200 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~ 279 (706)
..+||++++++++.++|+...... ..+.|||||+. |+|.++..+ ...||
T Consensus 269 --------~~~Iy~~d~~~~~~~~Lt~~~~~~-------------~~~~~spDG~~-i~f~s~~~g---------~~~Iy 317 (435)
T PRK05137 269 --------NTDIYTMDLRSGTTTRLTDSPAID-------------TSPSYSPDGSQ-IVFESDRSG---------SPQLY 317 (435)
T ss_pred --------CceEEEEECCCCceEEccCCCCcc-------------CceeEcCCCCE-EEEEECCCC---------CCeEE
Confidence 358999999999999998765432 24589999998 888764322 12589
Q ss_pred eecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceE
Q 005240 280 TQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMT 359 (706)
Q Consensus 280 ~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 359 (706)
++|+ ++++.++|+........+.|||||+.|++..... +..+|+++|++++ ..+.++... ..-.++
T Consensus 318 ~~d~---~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~-~~~~i~~~d~~~~--~~~~lt~~~--------~~~~p~ 383 (435)
T PRK05137 318 VMNA---DGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGG-GQFSIGVMKPDGS--GERILTSGF--------LVEGPT 383 (435)
T ss_pred EEEC---CCCCeEEeecCCCcccCeEECCCCCEEEEEEcCC-CceEEEEEECCCC--ceEeccCCC--------CCCCCe
Confidence 9998 7888888887666677899999999999976433 4568999999774 345554321 112378
Q ss_pred eccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeee
Q 005240 360 RTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIW 411 (706)
Q Consensus 360 ~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~ 411 (706)
|||||+.|++..... +. .....|+.+|+++++.+++.
T Consensus 384 ~spDG~~i~~~~~~~------------~~---~~~~~L~~~dl~g~~~~~l~ 420 (435)
T PRK05137 384 WAPNGRVIMFFRQTP------------GS---GGAPKLYTVDLTGRNEREVP 420 (435)
T ss_pred ECCCCCEEEEEEccC------------CC---CCcceEEEEECCCCceEEcc
Confidence 999999999876321 00 01146889999877766554
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.3e-23 Score=217.43 Aligned_cols=231 Identities=10% Similarity=0.045 Sum_probs=172.4
Q ss_pred cceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCe-EEEEeeccccccccCCceeEEEEEcCCCceeecccCCCc
Q 005240 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKR-IAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~-laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~ 83 (706)
..|++.|.+. ...++++. .+ ....|+|||||++ ++|++.. .+..+||++|+.+|+.++|+..++.
T Consensus 169 ~~l~~~d~dg----~~~~~~~~--~~-~~~~p~wSpDG~~~i~y~s~~-------~~~~~Iyv~dl~tg~~~~lt~~~g~ 234 (419)
T PRK04043 169 SNIVLADYTL----TYQKVIVK--GG-LNIFPKWANKEQTAFYYTSYG-------ERKPTLYKYNLYTGKKEKIASSQGM 234 (419)
T ss_pred ceEEEECCCC----CceeEEcc--CC-CeEeEEECCCCCcEEEEEEcc-------CCCCEEEEEECCCCcEEEEecCCCc
Confidence 4566766644 66777762 23 5678999999997 6666642 2457999999999999999865442
Q ss_pred cccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEc
Q 005240 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (706)
Q Consensus 84 ~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~ 163 (706)
...+.|||||+.|+|..... +..+||+++
T Consensus 235 -----~~~~~~SPDG~~la~~~~~~----------------------------------------------g~~~Iy~~d 263 (419)
T PRK04043 235 -----LVVSDVSKDGSKLLLTMAPK----------------------------------------------GQPDIYLYD 263 (419)
T ss_pred -----EEeeEECCCCCEEEEEEccC----------------------------------------------CCcEEEEEE
Confidence 44678999999999875321 226899999
Q ss_pred cCC-CceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccC
Q 005240 164 LDG-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVR 241 (706)
Q Consensus 164 l~g-~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~ 241 (706)
+++ +.++||.. .....+.|||||++|+|++.+.. ..+||++++++++.++++....
T Consensus 264 l~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g----------~~~Iy~~dl~~g~~~rlt~~g~------------ 321 (419)
T PRK04043 264 TNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLG----------YPNIFMKKLNSGSVEQVVFHGK------------ 321 (419)
T ss_pred CCCCcEEEcccCCCccCccEECCCCCEEEEEECCCC----------CceEEEEECCCCCeEeCccCCC------------
Confidence 954 88999877 44567889999999999997643 3589999999998888875421
Q ss_pred CCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccc
Q 005240 242 EGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKT 321 (706)
Q Consensus 242 ~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~ 321 (706)
....|||||+. |+|+........ ......|+++|+ ++++.++|+.. .....|.|||||+.|+|.+.. .
T Consensus 322 ---~~~~~SPDG~~-Ia~~~~~~~~~~---~~~~~~I~v~d~---~~g~~~~LT~~-~~~~~p~~SPDG~~I~f~~~~-~ 389 (419)
T PRK04043 322 ---NNSSVSTYKNY-IVYSSRETNNEF---GKNTFNLYLIST---NSDYIRRLTAN-GVNQFPRFSSDGGSIMFIKYL-G 389 (419)
T ss_pred ---cCceECCCCCE-EEEEEcCCCccc---CCCCcEEEEEEC---CCCCeEECCCC-CCcCCeEECCCCCEEEEEEcc-C
Confidence 13489999999 887764322110 011246999998 78888999865 345579999999999998754 4
Q ss_pred cceEEEEEcCCCC
Q 005240 322 SQTRTWLVCPGSK 334 (706)
Q Consensus 322 ~~~~l~~~d~~~~ 334 (706)
+...|+.+++++.
T Consensus 390 ~~~~L~~~~l~g~ 402 (419)
T PRK04043 390 NQSALGIIRLNYN 402 (419)
T ss_pred CcEEEEEEecCCC
Confidence 6678999999984
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.8e-23 Score=221.48 Aligned_cols=235 Identities=15% Similarity=0.193 Sum_probs=175.8
Q ss_pred ccceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCc
Q 005240 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (706)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~ 83 (706)
...|++.|.+. +..++++. ....+..|+|||||++|||++.. ++..+||++|+++|+.++++..++.
T Consensus 181 ~~~l~~~d~dg----~~~~~lt~--~~~~v~~p~wSpDG~~lay~s~~-------~g~~~i~~~dl~~g~~~~l~~~~g~ 247 (435)
T PRK05137 181 IKRLAIMDQDG----ANVRYLTD--GSSLVLTPRFSPNRQEITYMSYA-------NGRPRVYLLDLETGQRELVGNFPGM 247 (435)
T ss_pred ceEEEEECCCC----CCcEEEec--CCCCeEeeEECCCCCEEEEEEec-------CCCCEEEEEECCCCcEEEeecCCCc
Confidence 45788888755 88888874 23358899999999999998752 4558999999999999999865543
Q ss_pred cccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEc
Q 005240 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (706)
Q Consensus 84 ~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~ 163 (706)
...+.|||||+.|+|..... +..+||+++
T Consensus 248 -----~~~~~~SPDG~~la~~~~~~----------------------------------------------g~~~Iy~~d 276 (435)
T PRK05137 248 -----TFAPRFSPDGRKVVMSLSQG----------------------------------------------GNTDIYTMD 276 (435)
T ss_pred -----ccCcEECCCCCEEEEEEecC----------------------------------------------CCceEEEEE
Confidence 56789999999999875321 126899999
Q ss_pred cC-CCceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccC
Q 005240 164 LD-GTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVR 241 (706)
Q Consensus 164 l~-g~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~ 241 (706)
++ ++.++|+.. .....+.|||||++|+|.+.... ..+||++++++++.++++.....
T Consensus 277 ~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g----------~~~Iy~~d~~g~~~~~lt~~~~~----------- 335 (435)
T PRK05137 277 LRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSG----------SPQLYVMNADGSNPRRISFGGGR----------- 335 (435)
T ss_pred CCCCceEEccCCCCccCceeEcCCCCEEEEEECCCC----------CCeEEEEECCCCCeEEeecCCCc-----------
Confidence 95 488889877 45667999999999999886543 25899999999888888765322
Q ss_pred CCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccc
Q 005240 242 EGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKT 321 (706)
Q Consensus 242 ~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~ 321 (706)
...+.|||||+. |++..... + ...|+++++ +++..+.++. ......+.|||||+.|+|.....+
T Consensus 336 --~~~~~~SpdG~~-ia~~~~~~-~--------~~~i~~~d~---~~~~~~~lt~-~~~~~~p~~spDG~~i~~~~~~~~ 399 (435)
T PRK05137 336 --YSTPVWSPRGDL-IAFTKQGG-G--------QFSIGVMKP---DGSGERILTS-GFLVEGPTWAPNGRVIMFFRQTPG 399 (435)
T ss_pred --ccCeEECCCCCE-EEEEEcCC-C--------ceEEEEEEC---CCCceEeccC-CCCCCCCeECCCCCEEEEEEccCC
Confidence 124589999998 87765221 1 125888888 6666666654 345788999999999999865433
Q ss_pred c--ceEEEEEcCCCCCCCceee
Q 005240 322 S--QTRTWLVCPGSKDVAPRVL 341 (706)
Q Consensus 322 ~--~~~l~~~d~~~~~~~~~~l 341 (706)
. ...||+++++++ ..+.+
T Consensus 400 ~~~~~~L~~~dl~g~--~~~~l 419 (435)
T PRK05137 400 SGGAPKLYTVDLTGR--NEREV 419 (435)
T ss_pred CCCcceEEEEECCCC--ceEEc
Confidence 2 157999999884 34444
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-22 Score=216.61 Aligned_cols=249 Identities=18% Similarity=0.191 Sum_probs=181.7
Q ss_pred CeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCC
Q 005240 43 KRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGP 122 (706)
Q Consensus 43 ~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~ 122 (706)
++|||+....+ .....+||++|.+++..+++|.+... +..+.|||||+.|+|.+...
T Consensus 164 ~riayv~~~~~----~~~~~~l~~~d~dg~~~~~lt~~~~~-----~~~p~wSPDG~~la~~s~~~-------------- 220 (429)
T PRK03629 164 TRIAYVVQTNG----GQFPYELRVSDYDGYNQFVVHRSPQP-----LMSPAWSPDGSKLAYVTFES-------------- 220 (429)
T ss_pred CeEEEEEeeCC----CCcceeEEEEcCCCCCCEEeecCCCc-----eeeeEEcCCCCEEEEEEecC--------------
Confidence 78999986321 13467999999999999999876543 67899999999999985321
Q ss_pred ceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCCceecCCC-ceEeeeeeCCCCcEEEEEeeccCccc
Q 005240 123 KIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSY 200 (706)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~ 200 (706)
...+||++++ +|+.+.++.. +....++|||||++|+|+.....
T Consensus 221 --------------------------------g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g--- 265 (429)
T PRK03629 221 --------------------------------GRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTG--- 265 (429)
T ss_pred --------------------------------CCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCC---
Confidence 1268999999 4588888765 55668999999999999865432
Q ss_pred ccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeee
Q 005240 201 KVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYT 280 (706)
Q Consensus 201 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~ 280 (706)
..+|+++++++++.++++..... ...+.|||||+. |+|..+..+ ...||.
T Consensus 266 -------~~~I~~~d~~tg~~~~lt~~~~~-------------~~~~~wSPDG~~-I~f~s~~~g---------~~~Iy~ 315 (429)
T PRK03629 266 -------SLNLYVMDLASGQIRQVTDGRSN-------------NTEPTWFPDSQN-LAYTSDQAG---------RPQVYK 315 (429)
T ss_pred -------CcEEEEEECCCCCEEEccCCCCC-------------cCceEECCCCCE-EEEEeCCCC---------CceEEE
Confidence 24799999999888888766432 225689999998 888764322 125899
Q ss_pred ecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEe
Q 005240 281 QPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTR 360 (706)
Q Consensus 281 ~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 360 (706)
+|+ ++++.++++........+.|||||+.|++..... +..+||++|++++ +.+.|++.. ....++|
T Consensus 316 ~d~---~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~-g~~~I~~~dl~~g--~~~~Lt~~~--------~~~~p~~ 381 (429)
T PRK03629 316 VNI---NGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNG-GQQHIAKQDLATG--GVQVLTDTF--------LDETPSI 381 (429)
T ss_pred EEC---CCCCeEEeecCCCCccCEEECCCCCEEEEEEccC-CCceEEEEECCCC--CeEEeCCCC--------CCCCceE
Confidence 998 7788888876555667899999999999876443 4567999999884 456665321 1123679
Q ss_pred ccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeee
Q 005240 361 TSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIW 411 (706)
Q Consensus 361 s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~ 411 (706)
||||++|++.... +....|+.++++.+..++|.
T Consensus 382 SpDG~~i~~~s~~------------------~~~~~l~~~~~~G~~~~~l~ 414 (429)
T PRK03629 382 APNGTMVIYSSSQ------------------GMGSVLNLVSTDGRFKARLP 414 (429)
T ss_pred CCCCCEEEEEEcC------------------CCceEEEEEECCCCCeEECc
Confidence 9999999998642 12234677787655555554
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.1e-22 Score=215.17 Aligned_cols=228 Identities=16% Similarity=0.117 Sum_probs=169.0
Q ss_pred cceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCcc
Q 005240 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~ 84 (706)
..|++.|.+. ...++++.. ...+..|+|||||++|||++.. ++..+||++|+++++.++++..+..
T Consensus 198 ~~l~i~d~dG----~~~~~l~~~--~~~~~~p~wSPDG~~La~~s~~-------~g~~~L~~~dl~tg~~~~lt~~~g~- 263 (448)
T PRK04792 198 YQLMIADYDG----YNEQMLLRS--PEPLMSPAWSPDGRKLAYVSFE-------NRKAEIFVQDIYTQVREKVTSFPGI- 263 (448)
T ss_pred eEEEEEeCCC----CCceEeecC--CCcccCceECCCCCEEEEEEec-------CCCcEEEEEECCCCCeEEecCCCCC-
Confidence 3566666644 667777633 3357899999999999998752 4567999999999999889765542
Q ss_pred ccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc
Q 005240 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (706)
Q Consensus 85 ~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l 164 (706)
...+.|||||+.|+|..... +..+||++++
T Consensus 264 ----~~~~~wSPDG~~La~~~~~~----------------------------------------------g~~~Iy~~dl 293 (448)
T PRK04792 264 ----NGAPRFSPDGKKLALVLSKD----------------------------------------------GQPEIYVVDI 293 (448)
T ss_pred ----cCCeeECCCCCEEEEEEeCC----------------------------------------------CCeEEEEEEC
Confidence 35789999999999875321 1268999999
Q ss_pred C-CCceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCC
Q 005240 165 D-GTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVRE 242 (706)
Q Consensus 165 ~-g~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~ 242 (706)
+ ++.++++.. .....++|||||++|+|++.... ..+||++++++++.++|+.....
T Consensus 294 ~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g----------~~~Iy~~dl~~g~~~~Lt~~g~~------------ 351 (448)
T PRK04792 294 ATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGG----------KPQIYRVNLASGKVSRLTFEGEQ------------ 351 (448)
T ss_pred CCCCeEECccCCCCccceEECCCCCEEEEEECCCC----------CceEEEEECCCCCEEEEecCCCC------------
Confidence 5 588888876 45678999999999999886543 35899999998888888643211
Q ss_pred CCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeecccc
Q 005240 243 GMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTS 322 (706)
Q Consensus 243 g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~ 322 (706)
.....|||||+. |+|.....+ ...|+++|+ ++++++.|+... ....|.|+|||+.|+|..... +
T Consensus 352 -~~~~~~SpDG~~-l~~~~~~~g---------~~~I~~~dl---~~g~~~~lt~~~-~d~~ps~spdG~~I~~~~~~~-g 415 (448)
T PRK04792 352 -NLGGSITPDGRS-MIMVNRTNG---------KFNIARQDL---ETGAMQVLTSTR-LDESPSVAPNGTMVIYSTTYQ-G 415 (448)
T ss_pred -CcCeeECCCCCE-EEEEEecCC---------ceEEEEEEC---CCCCeEEccCCC-CCCCceECCCCCEEEEEEecC-C
Confidence 113489999998 887653221 124888988 778887777542 345789999999999987544 5
Q ss_pred ceEEEEEcCCCC
Q 005240 323 QTRTWLVCPGSK 334 (706)
Q Consensus 323 ~~~l~~~d~~~~ 334 (706)
...||.+++++.
T Consensus 416 ~~~l~~~~~~G~ 427 (448)
T PRK04792 416 KQVLAAVSIDGR 427 (448)
T ss_pred ceEEEEEECCCC
Confidence 667999998763
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.1e-22 Score=208.91 Aligned_cols=247 Identities=14% Similarity=0.123 Sum_probs=178.7
Q ss_pred CeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcE-EEEEecCCCCCCCCCCCCCCC
Q 005240 43 KRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTL-LIFTIPSSRRDPPKKTMVPLG 121 (706)
Q Consensus 43 ~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~-l~~~~~~~~~~~~~~~~~~~~ 121 (706)
.++||.+.. .+....+||++|.++...++++... . ...+.|||||+. ++|.+...
T Consensus 155 ~r~~~v~~~-----~~~~~~~l~~~d~dg~~~~~~~~~~-~-----~~~p~wSpDG~~~i~y~s~~~------------- 210 (419)
T PRK04043 155 KRKVVFSKY-----TGPKKSNIVLADYTLTYQKVIVKGG-L-----NIFPKWANKEQTAFYYTSYGE------------- 210 (419)
T ss_pred eeEEEEEEc-----cCCCcceEEEECCCCCceeEEccCC-C-----eEeEEECCCCCcEEEEEEccC-------------
Confidence 466776541 1123689999999999888888653 2 457899999986 66665321
Q ss_pred CceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCCceecCCC-ceEeeeeeCCCCcEEEEEeeccCcc
Q 005240 122 PKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYS 199 (706)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~ 199 (706)
...+||++|+ +|+.++|+.. +....+.|||||++|+|+.....
T Consensus 211 ---------------------------------~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g-- 255 (419)
T PRK04043 211 ---------------------------------RKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKG-- 255 (419)
T ss_pred ---------------------------------CCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCC--
Confidence 1258999999 5688888866 55667889999999999886543
Q ss_pred cccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceee
Q 005240 200 YKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIY 279 (706)
Q Consensus 200 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~ 279 (706)
..+||++++++++.++|+.....+. ...|||||+. |+|+++..+ ...||
T Consensus 256 --------~~~Iy~~dl~~g~~~~LT~~~~~d~-------------~p~~SPDG~~-I~F~Sdr~g---------~~~Iy 304 (419)
T PRK04043 256 --------QPDIYLYDTNTKTLTQITNYPGIDV-------------NGNFVEDDKR-IVFVSDRLG---------YPNIF 304 (419)
T ss_pred --------CcEEEEEECCCCcEEEcccCCCccC-------------ccEECCCCCE-EEEEECCCC---------CceEE
Confidence 3689999999999999988765332 3379999999 999875422 12599
Q ss_pred eecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccc-----cceEEEEEcCCCCCCCceeeecCcccccccCCC
Q 005240 280 TQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKT-----SQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPG 354 (706)
Q Consensus 280 ~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~-----~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~ 354 (706)
++|+ ++++.++++.... ..+.|||||+.|++...... +..+||++|++++ +.+.|+....
T Consensus 305 ~~dl---~~g~~~rlt~~g~--~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g--~~~~LT~~~~-------- 369 (419)
T PRK04043 305 MKKL---NSGSVEQVVFHGK--NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSD--YIRRLTANGV-------- 369 (419)
T ss_pred EEEC---CCCCeEeCccCCC--cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCC--CeEECCCCCC--------
Confidence 9999 7888888875422 24699999999999874331 2368999999984 5677765421
Q ss_pred CCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeeec
Q 005240 355 SPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWE 412 (706)
Q Consensus 355 ~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~ 412 (706)
...++|||||+.|+|.... +....|+.++++.....+|..
T Consensus 370 ~~~p~~SPDG~~I~f~~~~------------------~~~~~L~~~~l~g~~~~~l~~ 409 (419)
T PRK04043 370 NQFPRFSSDGGSIMFIKYL------------------GNQSALGIIRLNYNKSFLFPL 409 (419)
T ss_pred cCCeEECCCCCEEEEEEcc------------------CCcEEEEEEecCCCeeEEeec
Confidence 1137899999999998642 223357788886655555543
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.4e-22 Score=211.36 Aligned_cols=226 Identities=17% Similarity=0.205 Sum_probs=166.6
Q ss_pred CeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCC
Q 005240 43 KRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGP 122 (706)
Q Consensus 43 ~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~ 122 (706)
.+|||+... .+..+||++|.++...++++..... +..+.|||||+.|+|.+...
T Consensus 164 ~~iayv~~~-------~~~~~L~~~D~dG~~~~~l~~~~~~-----v~~p~wSPDG~~la~~s~~~-------------- 217 (427)
T PRK02889 164 TRIAYVIKT-------GNRYQLQISDADGQNAQSALSSPEP-----IISPAWSPDGTKLAYVSFES-------------- 217 (427)
T ss_pred cEEEEEEcc-------CCccEEEEECCCCCCceEeccCCCC-----cccceEcCCCCEEEEEEccC--------------
Confidence 679998742 4467999999988888888765543 67899999999999986421
Q ss_pred ceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCCceecCCC-ceEeeeeeCCCCcEEEEEeeccCccc
Q 005240 123 KIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSY 200 (706)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~ 200 (706)
...+||++++ +|+.++++.. +....++|||||++|+|+.....
T Consensus 218 --------------------------------~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g--- 262 (427)
T PRK02889 218 --------------------------------KKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDG--- 262 (427)
T ss_pred --------------------------------CCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCC---
Confidence 1257999999 5577777754 55678999999999999765533
Q ss_pred ccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeee
Q 005240 201 KVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYT 280 (706)
Q Consensus 201 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~ 280 (706)
..+||+++++++..++|+.....+ ..+.|||||+. |+|.++..+ . ..||.
T Consensus 263 -------~~~Iy~~d~~~~~~~~lt~~~~~~-------------~~~~wSpDG~~-l~f~s~~~g-~--------~~Iy~ 312 (427)
T PRK02889 263 -------NSQIYTVNADGSGLRRLTQSSGID-------------TEPFFSPDGRS-IYFTSDRGG-A--------PQIYR 312 (427)
T ss_pred -------CceEEEEECCCCCcEECCCCCCCC-------------cCeEEcCCCCE-EEEEecCCC-C--------cEEEE
Confidence 358999999988888887754322 24589999998 887754322 1 24888
Q ss_pred ecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEe
Q 005240 281 QPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTR 360 (706)
Q Consensus 281 ~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 360 (706)
+++ ++++.++++........+.|||||+.|++.+... +..+|+++|++++ +.+.+++... .-.+.|
T Consensus 313 ~~~---~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~-g~~~I~v~d~~~g--~~~~lt~~~~--------~~~p~~ 378 (427)
T PRK02889 313 MPA---SGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVG-GAFKLYVQDLATG--QVTALTDTTR--------DESPSF 378 (427)
T ss_pred EEC---CCCceEEEecCCCCcCceEECCCCCEEEEEEccC-CcEEEEEEECCCC--CeEEccCCCC--------ccCceE
Confidence 887 6777777774444456789999999999876443 4568999999884 4566653321 123789
Q ss_pred ccCCCEEEEeeec
Q 005240 361 TSTGTNVIAKIKK 373 (706)
Q Consensus 361 s~dg~~l~~~~~~ 373 (706)
+|||+.|++....
T Consensus 379 spdg~~l~~~~~~ 391 (427)
T PRK02889 379 APNGRYILYATQQ 391 (427)
T ss_pred CCCCCEEEEEEec
Confidence 9999999998743
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.1e-22 Score=213.00 Aligned_cols=227 Identities=16% Similarity=0.143 Sum_probs=168.1
Q ss_pred cceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCcc
Q 005240 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~ 84 (706)
..|++.|.+. ...++++.. ...+..|+|||||++|||++.. ++..+||++|+.+|+.++++..++.
T Consensus 176 ~~L~~~D~dG----~~~~~l~~~--~~~v~~p~wSPDG~~la~~s~~-------~~~~~I~~~dl~~g~~~~l~~~~g~- 241 (427)
T PRK02889 176 YQLQISDADG----QNAQSALSS--PEPIISPAWSPDGTKLAYVSFE-------SKKPVVYVHDLATGRRRVVANFKGS- 241 (427)
T ss_pred cEEEEECCCC----CCceEeccC--CCCcccceEcCCCCEEEEEEcc-------CCCcEEEEEECCCCCEEEeecCCCC-
Confidence 3566666633 666777632 3357899999999999998752 4557899999999999888755442
Q ss_pred ccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc
Q 005240 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (706)
Q Consensus 85 ~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l 164 (706)
...+.|||||+.|+|..... +..+||.+++
T Consensus 242 ----~~~~~~SPDG~~la~~~~~~----------------------------------------------g~~~Iy~~d~ 271 (427)
T PRK02889 242 ----NSAPAWSPDGRTLAVALSRD----------------------------------------------GNSQIYTVNA 271 (427)
T ss_pred ----ccceEECCCCCEEEEEEccC----------------------------------------------CCceEEEEEC
Confidence 45789999999999875321 2268999999
Q ss_pred CC-CceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCC
Q 005240 165 DG-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVRE 242 (706)
Q Consensus 165 ~g-~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~ 242 (706)
++ ..++|+.. .....+.|||||++|+|++.+.. ..+||+++++++..++++.....
T Consensus 272 ~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g----------~~~Iy~~~~~~g~~~~lt~~g~~------------ 329 (427)
T PRK02889 272 DGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGG----------APQIYRMPASGGAAQRVTFTGSY------------ 329 (427)
T ss_pred CCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCC----------CcEEEEEECCCCceEEEecCCCC------------
Confidence 55 78888876 44567899999999999876532 25899999888877777643211
Q ss_pred CCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeecccc
Q 005240 243 GMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTS 322 (706)
Q Consensus 243 g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~ 322 (706)
.....|||||+. |+|.....+ ...|+++|+ ++++.++++.. .....|.|+|||+.|+|..... +
T Consensus 330 -~~~~~~SpDG~~-Ia~~s~~~g---------~~~I~v~d~---~~g~~~~lt~~-~~~~~p~~spdg~~l~~~~~~~-g 393 (427)
T PRK02889 330 -NTSPRISPDGKL-LAYISRVGG---------AFKLYVQDL---ATGQVTALTDT-TRDESPSFAPNGRYILYATQQG-G 393 (427)
T ss_pred -cCceEECCCCCE-EEEEEccCC---------cEEEEEEEC---CCCCeEEccCC-CCccCceECCCCCEEEEEEecC-C
Confidence 114589999998 887753221 124899998 67788888754 3457899999999999987654 5
Q ss_pred ceEEEEEcCCC
Q 005240 323 QTRTWLVCPGS 333 (706)
Q Consensus 323 ~~~l~~~d~~~ 333 (706)
...||.+++++
T Consensus 394 ~~~l~~~~~~g 404 (427)
T PRK02889 394 RSVLAAVSSDG 404 (427)
T ss_pred CEEEEEEECCC
Confidence 67899999976
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-21 Score=210.81 Aligned_cols=252 Identities=15% Similarity=0.174 Sum_probs=181.2
Q ss_pred CCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCC
Q 005240 42 GKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLG 121 (706)
Q Consensus 42 G~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~ 121 (706)
+.+|||+....+ ......+||++|.+++..++|+.+... +..+.|||||+.|+|.+...
T Consensus 167 ~~~ia~v~~~~~---~~~~~~~l~i~D~~g~~~~~lt~~~~~-----v~~p~wSpDg~~la~~s~~~------------- 225 (433)
T PRK04922 167 WTRIAYVTVSGA---GGAMRYALQVADSDGYNPQTILRSAEP-----ILSPAWSPDGKKLAYVSFER------------- 225 (433)
T ss_pred cceEEEEEEeCC---CCCceEEEEEECCCCCCceEeecCCCc-----cccccCCCCCCEEEEEecCC-------------
Confidence 567999876321 113356899999998889999876543 67899999999999985321
Q ss_pred CceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccC-CCceecCCC-ceEeeeeeCCCCcEEEEEeeccCcc
Q 005240 122 PKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD-GTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYS 199 (706)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~-g~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~ 199 (706)
...+||+++++ |+.++++.. +....++|||||++|+|+.....
T Consensus 226 ---------------------------------~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g-- 270 (433)
T PRK04922 226 ---------------------------------GRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDG-- 270 (433)
T ss_pred ---------------------------------CCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCC--
Confidence 12689999994 577777755 45568899999999999865432
Q ss_pred cccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceee
Q 005240 200 YKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIY 279 (706)
Q Consensus 200 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~ 279 (706)
..+|+++++++++.++++...... ..+.|||||+. |+|.++..+. ..||
T Consensus 271 --------~~~Iy~~d~~~g~~~~lt~~~~~~-------------~~~~~spDG~~-l~f~sd~~g~---------~~iy 319 (433)
T PRK04922 271 --------NPEIYVMDLGSRQLTRLTNHFGID-------------TEPTWAPDGKS-IYFTSDRGGR---------PQIY 319 (433)
T ss_pred --------CceEEEEECCCCCeEECccCCCCc-------------cceEECCCCCE-EEEEECCCCC---------ceEE
Confidence 258999999998888887654321 24589999998 8887644321 2489
Q ss_pred eecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceE
Q 005240 280 TQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMT 359 (706)
Q Consensus 280 ~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 359 (706)
.+++ ++++.++++........+.|||||+.|++... .++..+|+++|++++ +.+.|+.... ...+.
T Consensus 320 ~~dl---~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~-~~~~~~I~v~d~~~g--~~~~Lt~~~~--------~~~p~ 385 (433)
T PRK04922 320 RVAA---SGGSAERLTFQGNYNARASVSPDGKKIAMVHG-SGGQYRIAVMDLSTG--SVRTLTPGSL--------DESPS 385 (433)
T ss_pred EEEC---CCCCeEEeecCCCCccCEEECCCCCEEEEEEC-CCCceeEEEEECCCC--CeEECCCCCC--------CCCce
Confidence 9988 67788888755445567999999999999764 334568999999884 4566654321 12367
Q ss_pred eccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeeec
Q 005240 360 RTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWE 412 (706)
Q Consensus 360 ~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~ 412 (706)
|+|||++|++.... ..+..|+.++++++..+++..
T Consensus 386 ~spdG~~i~~~s~~------------------~g~~~L~~~~~~g~~~~~l~~ 420 (433)
T PRK04922 386 FAPNGSMVLYATRE------------------GGRGVLAAVSTDGRVRQRLVS 420 (433)
T ss_pred ECCCCCEEEEEEec------------------CCceEEEEEECCCCceEEccc
Confidence 99999999998642 123468888886665555643
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2e-21 Score=208.94 Aligned_cols=229 Identities=17% Similarity=0.149 Sum_probs=167.4
Q ss_pred CCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCC
Q 005240 42 GKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLG 121 (706)
Q Consensus 42 G~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~ 121 (706)
..+|||+.... ......+||++|.++...++++..... +..+.|||||++|+|.+...
T Consensus 182 ~~riayv~~~~----~~~~~~~l~i~d~dG~~~~~l~~~~~~-----~~~p~wSPDG~~La~~s~~~------------- 239 (448)
T PRK04792 182 LTRIAYVVVND----KDKYPYQLMIADYDGYNEQMLLRSPEP-----LMSPAWSPDGRKLAYVSFEN------------- 239 (448)
T ss_pred cCEEEEEEeeC----CCCCceEEEEEeCCCCCceEeecCCCc-----ccCceECCCCCEEEEEEecC-------------
Confidence 36888887531 112246899999999888889876653 67899999999999986421
Q ss_pred CceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCCceecCCC-ceEeeeeeCCCCcEEEEEeeccCcc
Q 005240 122 PKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYS 199 (706)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~ 199 (706)
...+||++++ +|+.++++.. +....++|||||++|+|+.....
T Consensus 240 ---------------------------------g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g-- 284 (448)
T PRK04792 240 ---------------------------------RKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDG-- 284 (448)
T ss_pred ---------------------------------CCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCC--
Confidence 1268999999 4577778765 44567899999999999865532
Q ss_pred cccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceee
Q 005240 200 YKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIY 279 (706)
Q Consensus 200 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~ 279 (706)
..+||++++++++.++++...... ..+.|||||+. |+|.....+. ..||
T Consensus 285 --------~~~Iy~~dl~tg~~~~lt~~~~~~-------------~~p~wSpDG~~-I~f~s~~~g~---------~~Iy 333 (448)
T PRK04792 285 --------QPEIYVVDIATKALTRITRHRAID-------------TEPSWHPDGKS-LIFTSERGGK---------PQIY 333 (448)
T ss_pred --------CeEEEEEECCCCCeEECccCCCCc-------------cceEECCCCCE-EEEEECCCCC---------ceEE
Confidence 358999999999888887754322 24589999998 8877543221 2599
Q ss_pred eecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceE
Q 005240 280 TQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMT 359 (706)
Q Consensus 280 ~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 359 (706)
++|+ ++++.++|+........+.|||||+.|++.... .+..+||++|++++ +.+.+++... ...++
T Consensus 334 ~~dl---~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~-~g~~~I~~~dl~~g--~~~~lt~~~~--------d~~ps 399 (448)
T PRK04792 334 RVNL---ASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRT-NGKFNIARQDLETG--AMQVLTSTRL--------DESPS 399 (448)
T ss_pred EEEC---CCCCEEEEecCCCCCcCeeECCCCCEEEEEEec-CCceEEEEEECCCC--CeEEccCCCC--------CCCce
Confidence 9998 778888887444445568999999999997643 35668999999984 4556643321 11357
Q ss_pred eccCCCEEEEeee
Q 005240 360 RTSTGTNVIAKIK 372 (706)
Q Consensus 360 ~s~dg~~l~~~~~ 372 (706)
|+|||+.|++...
T Consensus 400 ~spdG~~I~~~~~ 412 (448)
T PRK04792 400 VAPNGTMVIYSTT 412 (448)
T ss_pred ECCCCCEEEEEEe
Confidence 9999999998764
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.6e-21 Score=209.16 Aligned_cols=252 Identities=15% Similarity=0.150 Sum_probs=180.7
Q ss_pred CCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCC
Q 005240 41 DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPL 120 (706)
Q Consensus 41 DG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~ 120 (706)
-..+|||++.... ..++..+||++|.+++..++++..... +..+.|||||++|+|.+...
T Consensus 161 f~~~ia~v~~~~~---~~~~~~~l~~~d~~g~~~~~l~~~~~~-----~~~p~wSpDG~~la~~s~~~------------ 220 (430)
T PRK00178 161 FSTRILYVTAERF---SVNTRYTLQRSDYDGARAVTLLQSREP-----ILSPRWSPDGKRIAYVSFEQ------------ 220 (430)
T ss_pred ceeeEEEEEeeCC---CCCcceEEEEECCCCCCceEEecCCCc-----eeeeeECCCCCEEEEEEcCC------------
Confidence 5668999875321 113456899999999988888765443 67889999999999986421
Q ss_pred CCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCCceecCCC-ceEeeeeeCCCCcEEEEEeeccCc
Q 005240 121 GPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPY 198 (706)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~ 198 (706)
...+||++++ +|+.++++.. +....++|||||++|+|+.....
T Consensus 221 ----------------------------------~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g- 265 (430)
T PRK00178 221 ----------------------------------KRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDG- 265 (430)
T ss_pred ----------------------------------CCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCC-
Confidence 1258999999 4588888765 45567999999999999876532
Q ss_pred ccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCcccee
Q 005240 199 SYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDII 278 (706)
Q Consensus 199 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l 278 (706)
..+|+++|+++++.++|+...... ..+.|||||+. |+|..+..+. ..|
T Consensus 266 ---------~~~Iy~~d~~~~~~~~lt~~~~~~-------------~~~~~spDg~~-i~f~s~~~g~---------~~i 313 (430)
T PRK00178 266 ---------NPEIYVMDLASRQLSRVTNHPAID-------------TEPFWGKDGRT-LYFTSDRGGK---------PQI 313 (430)
T ss_pred ---------CceEEEEECCCCCeEEcccCCCCc-------------CCeEECCCCCE-EEEEECCCCC---------ceE
Confidence 258999999999888887654322 24589999998 8887543221 258
Q ss_pred eeecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCce
Q 005240 279 YTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMM 358 (706)
Q Consensus 279 ~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 358 (706)
|++++ ++++.++++........+.|||||+.|++..... +..+||++|++++ +.+.|++.... -.+
T Consensus 314 y~~d~---~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~-~~~~l~~~dl~tg--~~~~lt~~~~~--------~~p 379 (430)
T PRK00178 314 YKVNV---NGGRAERVTFVGNYNARPRLSADGKTLVMVHRQD-GNFHVAAQDLQRG--SVRILTDTSLD--------ESP 379 (430)
T ss_pred EEEEC---CCCCEEEeecCCCCccceEECCCCCEEEEEEccC-CceEEEEEECCCC--CEEEccCCCCC--------CCc
Confidence 99998 7788888875444556789999999999986433 4567999999984 46666543211 125
Q ss_pred EeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeee
Q 005240 359 TRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIW 411 (706)
Q Consensus 359 ~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~ 411 (706)
.|||||++|++.... +++..|+.++++.+..+++.
T Consensus 380 ~~spdg~~i~~~~~~------------------~g~~~l~~~~~~g~~~~~l~ 414 (430)
T PRK00178 380 SVAPNGTMLIYATRQ------------------QGRGVLMLVSINGRVRLPLP 414 (430)
T ss_pred eECCCCCEEEEEEec------------------CCceEEEEEECCCCceEECc
Confidence 789999999998643 22345777887654444443
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-21 Score=210.87 Aligned_cols=233 Identities=15% Similarity=0.116 Sum_probs=172.8
Q ss_pred cceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCcc
Q 005240 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~ 84 (706)
..|++.|.+. +..++|+.. +..+..|+|||||++|||++.. .+..+||++++++++.++++..++.
T Consensus 184 ~~l~i~D~~g----~~~~~lt~~--~~~v~~p~wSpDg~~la~~s~~-------~~~~~l~~~dl~~g~~~~l~~~~g~- 249 (433)
T PRK04922 184 YALQVADSDG----YNPQTILRS--AEPILSPAWSPDGKKLAYVSFE-------RGRSAIYVQDLATGQRELVASFRGI- 249 (433)
T ss_pred EEEEEECCCC----CCceEeecC--CCccccccCCCCCCEEEEEecC-------CCCcEEEEEECCCCCEEEeccCCCC-
Confidence 3577777754 777888743 3358899999999999998742 4567899999999999998765432
Q ss_pred ccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc
Q 005240 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (706)
Q Consensus 85 ~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l 164 (706)
...+.|||||+.|+|..... +..+||++++
T Consensus 250 ----~~~~~~SpDG~~l~~~~s~~----------------------------------------------g~~~Iy~~d~ 279 (433)
T PRK04922 250 ----NGAPSFSPDGRRLALTLSRD----------------------------------------------GNPEIYVMDL 279 (433)
T ss_pred ----ccCceECCCCCEEEEEEeCC----------------------------------------------CCceEEEEEC
Confidence 45789999999999875321 1258999999
Q ss_pred -CCCceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCC
Q 005240 165 -DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVRE 242 (706)
Q Consensus 165 -~g~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~ 242 (706)
+|+.++++.. .....++|||||++|+|++.+.. ..+||++++++++.++++.....
T Consensus 280 ~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g----------~~~iy~~dl~~g~~~~lt~~g~~------------ 337 (433)
T PRK04922 280 GSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGG----------RPQIYRVAASGGSAERLTFQGNY------------ 337 (433)
T ss_pred CCCCeEECccCCCCccceEECCCCCEEEEEECCCC----------CceEEEEECCCCCeEEeecCCCC------------
Confidence 4588888876 44567899999999999986543 24899999998888887643211
Q ss_pred CCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeecccc
Q 005240 243 GMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTS 322 (706)
Q Consensus 243 g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~ 322 (706)
...++|||||+. |++.... ++ ...|+++|+ ++++.+.|+... ....+.|+|||+.|+|.+... +
T Consensus 338 -~~~~~~SpDG~~-Ia~~~~~-~~--------~~~I~v~d~---~~g~~~~Lt~~~-~~~~p~~spdG~~i~~~s~~~-g 401 (433)
T PRK04922 338 -NARASVSPDGKK-IAMVHGS-GG--------QYRIAVMDL---STGSVRTLTPGS-LDESPSFAPNGSMVLYATREG-G 401 (433)
T ss_pred -ccCEEECCCCCE-EEEEECC-CC--------ceeEEEEEC---CCCCeEECCCCC-CCCCceECCCCCEEEEEEecC-C
Confidence 124689999998 8776432 11 125899998 778888887543 456889999999999987553 5
Q ss_pred ceEEEEEcCCCCCCCceee
Q 005240 323 QTRTWLVCPGSKDVAPRVL 341 (706)
Q Consensus 323 ~~~l~~~d~~~~~~~~~~l 341 (706)
...||.+++++. ..+.+
T Consensus 402 ~~~L~~~~~~g~--~~~~l 418 (433)
T PRK04922 402 RGVLAAVSTDGR--VRQRL 418 (433)
T ss_pred ceEEEEEECCCC--ceEEc
Confidence 678999999873 34444
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.8e-21 Score=210.33 Aligned_cols=226 Identities=17% Similarity=0.164 Sum_probs=168.6
Q ss_pred eeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCcccc
Q 005240 7 IGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLN 86 (706)
Q Consensus 7 ~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~ 86 (706)
|++.|.+. +..++++. .+..+..|+|||||++|||++.. ++..+||++++++|+.++++...+.
T Consensus 181 l~~~d~~g----~~~~~l~~--~~~~~~~p~wSpDG~~la~~s~~-------~~~~~l~~~~l~~g~~~~l~~~~g~--- 244 (430)
T PRK00178 181 LQRSDYDG----ARAVTLLQ--SREPILSPRWSPDGKRIAYVSFE-------QKRPRIFVQNLDTGRREQITNFEGL--- 244 (430)
T ss_pred EEEECCCC----CCceEEec--CCCceeeeeECCCCCEEEEEEcC-------CCCCEEEEEECCCCCEEEccCCCCC---
Confidence 56666644 77777763 33357899999999999998752 4557999999999999999865542
Q ss_pred ccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccC-
Q 005240 87 AVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD- 165 (706)
Q Consensus 87 ~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~- 165 (706)
...+.|||||++|+|..... +..+||++|++
T Consensus 245 --~~~~~~SpDG~~la~~~~~~----------------------------------------------g~~~Iy~~d~~~ 276 (430)
T PRK00178 245 --NGAPAWSPDGSKLAFVLSKD----------------------------------------------GNPEIYVMDLAS 276 (430)
T ss_pred --cCCeEECCCCCEEEEEEccC----------------------------------------------CCceEEEEECCC
Confidence 45789999999999875321 12589999995
Q ss_pred CCceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCC
Q 005240 166 GTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGM 244 (706)
Q Consensus 166 g~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~ 244 (706)
++.++|+.. .....+.|||||++|+|++...+ ..+||++++++++.++++..... .
T Consensus 277 ~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g----------~~~iy~~d~~~g~~~~lt~~~~~-------------~ 333 (430)
T PRK00178 277 RQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGG----------KPQIYKVNVNGGRAERVTFVGNY-------------N 333 (430)
T ss_pred CCeEEcccCCCCcCCeEECCCCCEEEEEECCCC----------CceEEEEECCCCCEEEeecCCCC-------------c
Confidence 478888876 45567899999999999986543 25899999998888887643211 1
Q ss_pred cceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccccce
Q 005240 245 RSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQT 324 (706)
Q Consensus 245 ~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 324 (706)
....|||||+. |+|....++ ...|+++|+ ++++.+.|+... ....+.|||||+.|+|.+... +..
T Consensus 334 ~~~~~Spdg~~-i~~~~~~~~---------~~~l~~~dl---~tg~~~~lt~~~-~~~~p~~spdg~~i~~~~~~~-g~~ 398 (430)
T PRK00178 334 ARPRLSADGKT-LVMVHRQDG---------NFHVAAQDL---QRGSVRILTDTS-LDESPSVAPNGTMLIYATRQQ-GRG 398 (430)
T ss_pred cceEECCCCCE-EEEEEccCC---------ceEEEEEEC---CCCCEEEccCCC-CCCCceECCCCCEEEEEEecC-Cce
Confidence 14589999998 887753321 124889998 778888887543 445789999999999987544 567
Q ss_pred EEEEEcCCCC
Q 005240 325 RTWLVCPGSK 334 (706)
Q Consensus 325 ~l~~~d~~~~ 334 (706)
+||.+++++.
T Consensus 399 ~l~~~~~~g~ 408 (430)
T PRK00178 399 VLMLVSINGR 408 (430)
T ss_pred EEEEEECCCC
Confidence 8999999873
|
|
| >PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.2e-22 Score=194.45 Aligned_cols=152 Identities=23% Similarity=0.324 Sum_probs=128.7
Q ss_pred hHHHHHHHCCeEEEEcCCCCcCCCCCCCCc---hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHh
Q 005240 546 TSSLIFLARRFAVLAGPSIPIIGEGDKLPN---DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAH 622 (706)
Q Consensus 546 ~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~---~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~ 622 (706)
...+.|+++||+|+.+++||+.|+|..+.. ..+....++|+.+++++|+++..+|++||+|+|+|+||++|++++.+
T Consensus 5 ~~~~~la~~Gy~v~~~~~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~iD~~ri~i~G~S~GG~~a~~~~~~ 84 (213)
T PF00326_consen 5 WNAQLLASQGYAVLVPNYRGSGGYGKDFHEAGRGDWGQADVDDVVAAIEYLIKQYYIDPDRIGIMGHSYGGYLALLAATQ 84 (213)
T ss_dssp HHHHHHHTTT-EEEEEE-TTSSSSHHHHHHTTTTGTTHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETHHHHHHHHHHHH
T ss_pred HHHHHHHhCCEEEEEEcCCCCCccchhHHHhhhccccccchhhHHHHHHHHhccccccceeEEEEcccccccccchhhcc
Confidence 356888999999999999999999887654 35566789999999999999999999999999999999999999999
Q ss_pred CCCceeEEEeccCCCCCCCCCcc---c--------------------------------------------------hHH
Q 005240 623 APHLFCCGIARSGSYNKTLTPFG---F--------------------------------------------------QAE 649 (706)
Q Consensus 623 ~p~~~~a~v~~~~~~d~~~~~~~---~--------------------------------------------------~~~ 649 (706)
+|++|+|+++.+|++|....... + ++.
T Consensus 85 ~~~~f~a~v~~~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~P~li~hG~~D~~Vp~~~s~ 164 (213)
T PF00326_consen 85 HPDRFKAAVAGAGVSDLFSYYGTTDIYTKAEYLEYGDPWDNPEFYRELSPISPADNVQIKPPVLIIHGENDPRVPPSQSL 164 (213)
T ss_dssp TCCGSSEEEEESE-SSTTCSBHHTCCHHHGHHHHHSSTTTSHHHHHHHHHGGGGGGCGGGSEEEEEEETTBSSSTTHHHH
T ss_pred cceeeeeeeccceecchhcccccccccccccccccCccchhhhhhhhhccccccccccCCCCEEEEccCCCCccCHHHHH
Confidence 99999999999999885532100 0 122
Q ss_pred HHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHhcc
Q 005240 650 RFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCLS 697 (706)
Q Consensus 650 ~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~~~~l~~ 697 (706)
+|+++|+++++++++++||+++|.+..+....+.++++++||+++|+.
T Consensus 165 ~~~~~L~~~g~~~~~~~~p~~gH~~~~~~~~~~~~~~~~~f~~~~l~~ 212 (213)
T PF00326_consen 165 RLYNALRKAGKPVELLIFPGEGHGFGNPENRRDWYERILDFFDKYLKK 212 (213)
T ss_dssp HHHHHHHHTTSSEEEEEETT-SSSTTSHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHhcCCCEEEEEcCcCCCCCCCchhHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999988888889999999999999974
|
; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B .... |
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.1e-19 Score=193.08 Aligned_cols=222 Identities=19% Similarity=0.155 Sum_probs=157.1
Q ss_pred CCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCC
Q 005240 42 GKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLG 121 (706)
Q Consensus 42 G~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~ 121 (706)
+++|||+..+.+ .....+||++|.++...++++.+... +..+.|||||++|+|.+...
T Consensus 168 ~~ria~v~~~~~----~~~~~~i~i~d~dg~~~~~lt~~~~~-----v~~p~wSPDG~~la~~s~~~------------- 225 (429)
T PRK01742 168 RTRIAYVVQKNG----GSQPYEVRVADYDGFNQFIVNRSSQP-----LMSPAWSPDGSKLAYVSFEN------------- 225 (429)
T ss_pred CCEEEEEEEEcC----CCceEEEEEECCCCCCceEeccCCCc-----cccceEcCCCCEEEEEEecC-------------
Confidence 689999986321 12347999999999888888865543 67899999999999986421
Q ss_pred CceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCCceecCCC-ceEeeeeeCCCCcEEEEEeeccCcc
Q 005240 122 PKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYS 199 (706)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~ 199 (706)
...+||++++ +|+.+.++.. +....++|||||++|++......
T Consensus 226 ---------------------------------~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g-- 270 (429)
T PRK01742 226 ---------------------------------KKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDG-- 270 (429)
T ss_pred ---------------------------------CCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecCC--
Confidence 1258999999 4566666644 44557999999999999865432
Q ss_pred cccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceee
Q 005240 200 YKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIY 279 (706)
Q Consensus 200 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~ 279 (706)
..+||++++++++.++++..... ...+.|||||+. |+|..+.++. ..||
T Consensus 271 --------~~~Iy~~d~~~~~~~~lt~~~~~-------------~~~~~wSpDG~~-i~f~s~~~g~---------~~I~ 319 (429)
T PRK01742 271 --------VLNIYVMGANGGTPSQLTSGAGN-------------NTEPSWSPDGQS-ILFTSDRSGS---------PQVY 319 (429)
T ss_pred --------cEEEEEEECCCCCeEeeccCCCC-------------cCCEEECCCCCE-EEEEECCCCC---------ceEE
Confidence 24799999998888888765432 225699999998 8877543321 2488
Q ss_pred eecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceE
Q 005240 280 TQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMT 359 (706)
Q Consensus 280 ~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 359 (706)
.++. .++..+.+. ... ..+.|||||+.|++... ..++.+|+.++ +.+.++... . ...+.
T Consensus 320 ~~~~---~~~~~~~l~-~~~--~~~~~SpDG~~ia~~~~-----~~i~~~Dl~~g--~~~~lt~~~-~-------~~~~~ 378 (429)
T PRK01742 320 RMSA---SGGGASLVG-GRG--YSAQISADGKTLVMING-----DNVVKQDLTSG--STEVLSSTF-L-------DESPS 378 (429)
T ss_pred EEEC---CCCCeEEec-CCC--CCccCCCCCCEEEEEcC-----CCEEEEECCCC--CeEEecCCC-C-------CCCce
Confidence 8887 566555553 222 46889999999998652 34788999884 344543221 1 12367
Q ss_pred eccCCCEEEEeee
Q 005240 360 RTSTGTNVIAKIK 372 (706)
Q Consensus 360 ~s~dg~~l~~~~~ 372 (706)
|+|||++|++...
T Consensus 379 ~sPdG~~i~~~s~ 391 (429)
T PRK01742 379 ISPNGIMIIYSST 391 (429)
T ss_pred ECCCCCEEEEEEc
Confidence 8999999998763
|
|
| >KOG2237 consensus Predicted serine protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.8e-18 Score=175.59 Aligned_cols=244 Identities=19% Similarity=0.186 Sum_probs=177.5
Q ss_pred CCCEEEEEEecCCCCcEEEEEECCCCce--eEeecCCCCCCCC--CCCceEEEEEEccCCeEEEEEEEecCCCCCCCCCC
Q 005240 437 NQLKILTSKESKTEITQYHILSWPLKKS--SQITNFPHPYPTL--ASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGP 512 (706)
Q Consensus 437 Dg~~l~~~~~~~~~p~~v~~~~~~~~~~--~~lt~~~~~~~~~--~~~~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~ 512 (706)
+.+.+.|..+|+..|+.||.||+..++. ..+.......+.. ....++.+.++++||+.||+.|+.-+.. +..++
T Consensus 392 ~~~~~~f~~sS~l~P~~iy~yDl~~~~~e~~vf~e~~~~lpg~~~s~y~~~r~~~~SkDGt~VPM~Iv~kk~~--k~dg~ 469 (712)
T KOG2237|consen 392 KSSTIRFQFSSFLTPGSIYDYDLANGKPEPSVFREITVVLPGFDASDYVVERIEVSSKDGTKVPMFIVYKKDI--KLDGS 469 (712)
T ss_pred CCceEEEEEeccCCCCeEEEeeccCCCCCCcceeeeccccCcccccceEEEEEEEecCCCCccceEEEEechh--hhcCC
Confidence 4568999999999999999999998732 1222221222332 3468999999999999999999995442 22345
Q ss_pred ceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCCCCchhh---HHHHHHHHHHH
Q 005240 513 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRF---VEQLVSSAEAA 589 (706)
Q Consensus 513 ~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~~~---~~~~~~D~~~~ 589 (706)
.|++||+|||.-.+ +.. +|.. .-..|..+|++....+.||+.++|+.|..... -...++|++++
T Consensus 470 ~P~LLygYGay~is------l~p---~f~~----srl~lld~G~Vla~a~VRGGGe~G~~WHk~G~lakKqN~f~Dfia~ 536 (712)
T KOG2237|consen 470 KPLLLYGYGAYGIS------LDP---SFRA----SRLSLLDRGWVLAYANVRGGGEYGEQWHKDGRLAKKQNSFDDFIAC 536 (712)
T ss_pred CceEEEEeccccee------ecc---cccc----ceeEEEecceEEEEEeeccCcccccchhhccchhhhcccHHHHHHH
Confidence 79999999985321 111 2211 11235669999888899999899998875422 22469999999
Q ss_pred HHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCCCCCC------C--------cc----------
Q 005240 590 VEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLT------P--------FG---------- 645 (706)
Q Consensus 590 ~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d~~~~------~--------~~---------- 645 (706)
++||+++++.-|+++++.|+|.||.|+..++.+.|++|+|+++..|+.|..-+ | +.
T Consensus 537 AeyLve~gyt~~~kL~i~G~SaGGlLvga~iN~rPdLF~avia~VpfmDvL~t~~~tilplt~sd~ee~g~p~~~~~~~~ 616 (712)
T KOG2237|consen 537 AEYLVENGYTQPSKLAIEGGSAGGLLVGACINQRPDLFGAVIAKVPFMDVLNTHKDTILPLTTSDYEEWGNPEDFEDLIK 616 (712)
T ss_pred HHHHHHcCCCCccceeEecccCccchhHHHhccCchHhhhhhhcCcceehhhhhccCccccchhhhcccCChhhhhhhhe
Confidence 99999999999999999999999999999999999999999999999873310 0 00
Q ss_pred ---------------c-----------------hHHHHHHHHHhC-------CCcEEEEEeCCCCccCCCcc-cHHHHHH
Q 005240 646 ---------------F-----------------QAERFFDALKGH-------GALSRLVLLPFEHHVYAARE-NVMHVIW 685 (706)
Q Consensus 646 ---------------~-----------------~~~~~~~~l~~~-------~~~~~~~~~~~~~H~~~~~~-~~~~~~~ 685 (706)
| .+.++..+|+.. ..|+-+.+..++||...++. ..++-..
T Consensus 617 i~~y~pv~~i~~q~~YPS~lvtta~hD~RV~~~~~~K~vAklre~~~~~~~q~~pvll~i~~~agH~~~~~~~k~~~E~a 696 (712)
T KOG2237|consen 617 ISPYSPVDNIKKQVQYPSMLVTTADHDDRVGPLESLKWVAKLREATCDSLKQTNPVLLRIETKAGHGAEKPRFKQIEEAA 696 (712)
T ss_pred ecccCccCCCchhccCcceEEeeccCCCcccccchHHHHHHHHHHhhcchhcCCCEEEEEecCCccccCCchHHHHHHHH
Confidence 0 111555555532 24688889999999886543 3456666
Q ss_pred HHHHHHHHHh
Q 005240 686 ETDRWLQKYC 695 (706)
Q Consensus 686 ~~~~f~~~~l 695 (706)
..++||.+-+
T Consensus 697 ~~yaFl~K~~ 706 (712)
T KOG2237|consen 697 FRYAFLAKML 706 (712)
T ss_pred HHHHHHHHHh
Confidence 7788888755
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.2e-19 Score=192.93 Aligned_cols=226 Identities=17% Similarity=0.147 Sum_probs=161.4
Q ss_pred cceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCcc
Q 005240 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~ 84 (706)
..|+|.|.+. +..++++. ....+..|+|||||++|||++.. ++..+||++|+++++.++++...+.
T Consensus 184 ~~i~i~d~dg----~~~~~lt~--~~~~v~~p~wSPDG~~la~~s~~-------~~~~~i~i~dl~tg~~~~l~~~~g~- 249 (429)
T PRK01742 184 YEVRVADYDG----FNQFIVNR--SSQPLMSPAWSPDGSKLAYVSFE-------NKKSQLVVHDLRSGARKVVASFRGH- 249 (429)
T ss_pred EEEEEECCCC----CCceEecc--CCCccccceEcCCCCEEEEEEec-------CCCcEEEEEeCCCCceEEEecCCCc-
Confidence 4677777654 56666663 22358899999999999998752 4457899999999988888755432
Q ss_pred ccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc
Q 005240 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (706)
Q Consensus 85 ~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l 164 (706)
...+.|||||++|++..... +..+||++++
T Consensus 250 ----~~~~~wSPDG~~La~~~~~~----------------------------------------------g~~~Iy~~d~ 279 (429)
T PRK01742 250 ----NGAPAFSPDGSRLAFASSKD----------------------------------------------GVLNIYVMGA 279 (429)
T ss_pred ----cCceeECCCCCEEEEEEecC----------------------------------------------CcEEEEEEEC
Confidence 45789999999999875311 1257999999
Q ss_pred C-CCceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCC
Q 005240 165 D-GTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVRE 242 (706)
Q Consensus 165 ~-g~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~ 242 (706)
+ ++.++++.. .....+.|||||++|+|++.... ..+||.++..++..+.+. ...
T Consensus 280 ~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g----------~~~I~~~~~~~~~~~~l~-~~~------------- 335 (429)
T PRK01742 280 NGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSG----------SPQVYRMSASGGGASLVG-GRG------------- 335 (429)
T ss_pred CCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCC----------CceEEEEECCCCCeEEec-CCC-------------
Confidence 5 488888876 56778999999999999876543 247888888877666552 111
Q ss_pred CCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeecccc
Q 005240 243 GMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTS 322 (706)
Q Consensus 243 g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~ 322 (706)
....|||||+. |++... +.++++|+ .+++.+.++.. .....+.|+|||+.|++.+.+ +.
T Consensus 336 --~~~~~SpDG~~-ia~~~~-------------~~i~~~Dl---~~g~~~~lt~~-~~~~~~~~sPdG~~i~~~s~~-g~ 394 (429)
T PRK01742 336 --YSAQISADGKT-LVMING-------------DNVVKQDL---TSGSTEVLSST-FLDESPSISPNGIMIIYSSTQ-GL 394 (429)
T ss_pred --CCccCCCCCCE-EEEEcC-------------CCEEEEEC---CCCCeEEecCC-CCCCCceECCCCCEEEEEEcC-CC
Confidence 13479999998 776631 13677888 67777777643 345689999999999998753 34
Q ss_pred ceEEEEEcCCCCCCCceee
Q 005240 323 QTRTWLVCPGSKDVAPRVL 341 (706)
Q Consensus 323 ~~~l~~~d~~~~~~~~~~l 341 (706)
...++.+++++. ..+.|
T Consensus 395 ~~~l~~~~~~G~--~~~~l 411 (429)
T PRK01742 395 GKVLQLVSADGR--FKARL 411 (429)
T ss_pred ceEEEEEECCCC--ceEEc
Confidence 455677777763 34444
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.4e-18 Score=181.74 Aligned_cols=303 Identities=17% Similarity=0.166 Sum_probs=195.0
Q ss_pred CCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCCCCC
Q 005240 39 SPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMV 118 (706)
Q Consensus 39 SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~ 118 (706)
||||+++++..+..+..+. +....+|++|+++++.++++.... ....+.|||||+.|+|...
T Consensus 1 S~d~~~~l~~~~~~~~~r~-s~~~~y~i~d~~~~~~~~l~~~~~-----~~~~~~~sP~g~~~~~v~~------------ 62 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRH-SFKGDYYIYDIETGEITPLTPPPP-----KLQDAKWSPDGKYIAFVRD------------ 62 (353)
T ss_dssp -TTSSEEEEEEEEEEESSS-EEEEEEEEEETTTTEEEESS-EET-----TBSEEEE-SSSTEEEEEET------------
T ss_pred CCCCCeEEEEECcEEeeee-ccceeEEEEecCCCceEECcCCcc-----ccccceeecCCCeeEEEec------------
Confidence 8999999998874332222 556789999999999999975522 2678899999999999842
Q ss_pred CCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCCceecCCCc-------------------eEe
Q 005240 119 PLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTPA-------------------VYT 178 (706)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~~~lt~~~-------------------~~~ 178 (706)
..||+.++ +++.++||..+ ...
T Consensus 63 --------------------------------------~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~ 104 (353)
T PF00930_consen 63 --------------------------------------NNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRS 104 (353)
T ss_dssp --------------------------------------TEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSB
T ss_pred --------------------------------------CceEEEECCCCCeEEeccccceeEEcCccceecccccccccc
Confidence 68999988 55777777541 124
Q ss_pred eeeeCCCCcEEEEEeeccCcc-------ccccc--------cc--------ccceEEEEecCCCeeEEcccCCCCCCCCc
Q 005240 179 AVEPSPDQKYVLITSMHRPYS-------YKVPC--------AR--------FSQKVQVWTTDGKLVRELCDLPPAEDIPV 235 (706)
Q Consensus 179 ~~~~SpDG~~i~~~~~~~~~~-------~~~~~--------~~--------~~~~i~~~~~~~~~~~~l~~~~~~~~~p~ 235 (706)
.+.|||||++|+|...+...- +.... .. -.-.++++++.+++...+........
T Consensus 105 ~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~--- 181 (353)
T PF00930_consen 105 AVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNP--- 181 (353)
T ss_dssp SEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHT---
T ss_pred ceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCC---
Confidence 677999999999988765211 00000 00 11467888888776544322200000
Q ss_pred ccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeec--ccc---cccceec-CC
Q 005240 236 CYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL--DLR---FRSVSWC-DD 309 (706)
Q Consensus 236 ~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~--~~~---~~~~~ws-pD 309 (706)
.......+.|++|++. |++... +. ..++..++++|+ .+++.+.+... ..- ...+.|. ++
T Consensus 182 ----~~~yl~~v~W~~d~~~-l~~~~~-nR------~q~~~~l~~~d~---~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~ 246 (353)
T PF00930_consen 182 ----QDYYLTRVGWSPDGKR-LWVQWL-NR------DQNRLDLVLCDA---STGETRVVLEETSDGWVDVYDPPHFLGPD 246 (353)
T ss_dssp ----SSEEEEEEEEEETTEE-EEEEEE-ET------TSTEEEEEEEEE---CTTTCEEEEEEESSSSSSSSSEEEE-TTT
T ss_pred ----CccCcccceecCCCcE-EEEEEc-cc------CCCEEEEEEEEC---CCCceeEEEEecCCcceeeecccccccCC
Confidence 0011337899999985 544421 11 123335888888 66766655422 222 2345555 89
Q ss_pred CceEEEEeeccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCC
Q 005240 310 SLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFT 389 (706)
Q Consensus 310 g~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~ 389 (706)
+..+++.+. .++..+||.++.++ +.+++|+.+...-.. ...++++++.|+|.+.. .
T Consensus 247 ~~~~l~~s~-~~G~~hly~~~~~~--~~~~~lT~G~~~V~~------i~~~d~~~~~iyf~a~~--------------~- 302 (353)
T PF00930_consen 247 GNEFLWISE-RDGYRHLYLYDLDG--GKPRQLTSGDWEVTS------ILGWDEDNNRIYFTANG--------------D- 302 (353)
T ss_dssp SSEEEEEEE-TTSSEEEEEEETTS--SEEEESS-SSS-EEE------EEEEECTSSEEEEEESS--------------G-
T ss_pred CCEEEEEEE-cCCCcEEEEEcccc--cceeccccCceeecc------cceEcCCCCEEEEEecC--------------C-
Confidence 988988876 66899999999999 456787665532210 14567888888887632 1
Q ss_pred CCCCCCceeeeecC-CCceeeeecccchhhhhhhhhhccCCCceecccCCCEEEEEEecCCCCc
Q 005240 390 PEGNIPFLDLFDIN-TGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEIT 452 (706)
Q Consensus 390 ~~~~~~~l~~~d~~-~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~p~ 452 (706)
+..+++||+++++ +|+.++|+...+. ...++||||+++++.+++.+..|+
T Consensus 303 -~p~~r~lY~v~~~~~~~~~~LT~~~~~------------~~~~~~Spdg~y~v~~~s~~~~P~ 353 (353)
T PF00930_consen 303 -NPGERHLYRVSLDSGGEPKCLTCEDGD------------HYSASFSPDGKYYVDTYSGPDTPP 353 (353)
T ss_dssp -GTTSBEEEEEETTETTEEEESSTTSST------------TEEEEE-TTSSEEEEEEESSSSCE
T ss_pred -CCCceEEEEEEeCCCCCeEeccCCCCC------------ceEEEECCCCCEEEEEEcCCCCCC
Confidence 1456789999999 8888889866542 026899999999999999998885
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.7e-17 Score=163.87 Aligned_cols=371 Identities=17% Similarity=0.119 Sum_probs=227.2
Q ss_pred ceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccc
Q 005240 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (706)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 85 (706)
+|+.++|.. |+.++||+ .-.-+..|++||||++|||++-. ....-...+||+++.++|+++++|.....
T Consensus 60 dlWe~slk~----g~~~ritS--~lGVvnn~kf~pdGrkvaf~rv~---~~ss~~taDly~v~~e~Ge~kRiTyfGr~-- 128 (668)
T COG4946 60 DLWEYSLKD----GKPLRITS--GLGVVNNPKFSPDGRKVAFSRVM---LGSSLQTADLYVVPSEDGEAKRITYFGRR-- 128 (668)
T ss_pred HHHHhhhcc----CCeeEEec--ccceeccccCCCCCcEEEEEEEE---ecCCCccccEEEEeCCCCcEEEEEEeccc--
Confidence 355667766 99999983 22246789999999999996632 11223457899999999999999987432
Q ss_pred ccccc-ceEEecCCcEEEEEecCCCCCC-------------CCCCCCCCCCcee-ecCCCcccccccchh----------
Q 005240 86 NAVFG-SFVWVNNSTLLIFTIPSSRRDP-------------PKKTMVPLGPKIQ-SNEQKNIIISRMTDN---------- 140 (706)
Q Consensus 86 ~~~~~-~~~wSpDg~~l~~~~~~~~~~~-------------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---------- 140 (706)
+. -..|+|||+.|+.+- ....+ .....++.|+... ...++..+.+|.+.+
T Consensus 129 ---fT~VaG~~~dg~iiV~TD--~~tPF~q~~~lYkv~~dg~~~e~LnlGpathiv~~dg~ivigRntydLP~WK~YkGG 203 (668)
T COG4946 129 ---FTRVAGWIPDGEIIVSTD--FHTPFSQWTELYKVNVDGIKTEPLNLGPATHIVIKDGIIVIGRNTYDLPHWKGYKGG 203 (668)
T ss_pred ---cceeeccCCCCCEEEEec--cCCCcccceeeeEEccCCceeeeccCCceeeEEEeCCEEEEccCcccCcccccccCC
Confidence 33 346999999887651 11111 1111122232211 122334444443221
Q ss_pred ---ccCCchhhh-hh------------------------hhcccceEEEEccCC-CceecCCCceEeeeeeCCCCcEEEE
Q 005240 141 ---LLKDEYDES-LF------------------------DYYTTAQLVLGSLDG-TAKDFGTPAVYTAVEPSPDQKYVLI 191 (706)
Q Consensus 141 ---~~~~~~d~~-~~------------------------~~~~~~~l~~~~l~g-~~~~lt~~~~~~~~~~SpDG~~i~~ 191 (706)
.++-+.++. .+ ...+.++||.+|++| ..++-|...++-.-..+.|||+|+|
T Consensus 204 trGklWis~d~g~tFeK~vdl~~~vS~PmIV~~RvYFlsD~eG~GnlYSvdldGkDlrrHTnFtdYY~R~~nsDGkrIvF 283 (668)
T COG4946 204 TRGKLWISSDGGKTFEKFVDLDGNVSSPMIVGERVYFLSDHEGVGNLYSVDLDGKDLRRHTNFTDYYPRNANSDGKRIVF 283 (668)
T ss_pred ccceEEEEecCCcceeeeeecCCCcCCceEEcceEEEEecccCccceEEeccCCchhhhcCCchhccccccCCCCcEEEE
Confidence 111111111 00 012457899999988 7888887744444446889999999
Q ss_pred EeeccCcccccccccccceEEEEecCCCeeEEcccC-CCC--CCCCcccCccCCCCcceeeec-CCCceEEEEEeccCCC
Q 005240 192 TSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDL-PPA--EDIPVCYNSVREGMRSISWRA-DKPSTLYWVEAQDRGD 267 (706)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~-~~~--~~~p~~~~~~~~g~~~~~~sp-dg~~~l~~~~~~~~~~ 267 (706)
... .+||++|.++..++.|.-+ +.. ...+.++. ....--.|++ +|.. +++++
T Consensus 284 q~~--------------GdIylydP~td~lekldI~lpl~rk~k~~k~~~---pskyledfa~~~Gd~-ia~VS------ 339 (668)
T COG4946 284 QNA--------------GDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVN---PSKYLEDFAVVNGDY-IALVS------ 339 (668)
T ss_pred ecC--------------CcEEEeCCCcCcceeeecCCccccccccccccC---HHHhhhhhccCCCcE-EEEEe------
Confidence 864 3799999998888877554 222 11222221 0011112333 3444 55552
Q ss_pred CccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCccc
Q 005240 268 ANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFE 347 (706)
Q Consensus 268 ~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~ 347 (706)
|+..|+++. ..+-.-++. ..+.+....++-|+..++....+. -.|-++|.+++ +.+.+ +.+..
T Consensus 340 -------RGkaFi~~~---~~~~~iqv~-~~~~VrY~r~~~~~e~~vigt~dg---D~l~iyd~~~~--e~kr~-e~~lg 402 (668)
T COG4946 340 -------RGKAFIMRP---WDGYSIQVG-KKGGVRYRRIQVDPEGDVIGTNDG---DKLGIYDKDGG--EVKRI-EKDLG 402 (668)
T ss_pred -------cCcEEEECC---CCCeeEEcC-CCCceEEEEEccCCcceEEeccCC---ceEEEEecCCc--eEEEe-eCCcc
Confidence 334666665 333333333 344466677777877777654332 25778888884 33333 33332
Q ss_pred ccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeeecccchhhhhhhhhhcc
Q 005240 348 NVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVF 427 (706)
Q Consensus 348 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~ 427 (706)
.+ +.+..|+||+++++.. ++-+||.+|+++|+.+.+-....+ +
T Consensus 403 ~I------~av~vs~dGK~~vvaN---------------------dr~el~vididngnv~~idkS~~~--------l-- 445 (668)
T COG4946 403 NI------EAVKVSPDGKKVVVAN---------------------DRFELWVIDIDNGNVRLIDKSEYG--------L-- 445 (668)
T ss_pred ce------EEEEEcCCCcEEEEEc---------------------CceEEEEEEecCCCeeEecccccc--------e--
Confidence 22 3366799999887763 345799999999988777555432 1
Q ss_pred CCCceecccCCCEEEEEEecCCCCcEEEEEECCCCceeEeecCC
Q 005240 428 GQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFP 471 (706)
Q Consensus 428 ~~~~~~~s~Dg~~l~~~~~~~~~p~~v~~~~~~~~~~~~lt~~~ 471 (706)
.....|||++++++|..-+.--.+.|.++|..+++...+|+.+
T Consensus 446 -Itdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~t 488 (668)
T COG4946 446 -ITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPT 488 (668)
T ss_pred -eEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCc
Confidence 2257999999999998776666778999999999999999764
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-17 Score=180.82 Aligned_cols=232 Identities=18% Similarity=0.201 Sum_probs=167.7
Q ss_pred CCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCCCCC
Q 005240 39 SPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMV 118 (706)
Q Consensus 39 SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~ 118 (706)
.+.+.+++|++... ..+..+||++|.+++..++++..... +..+.|||||++|+|.....
T Consensus 152 ~~~~~~~~~~~~~~-----~~~~~~l~~~d~~g~~~~~l~~~~~~-----~~~p~~Spdg~~la~~~~~~---------- 211 (417)
T TIGR02800 152 GAFSTRIAYVSKSG-----KSRRYELQVADYDGANPQTITRSREP-----ILSPAWSPDGQKLAYVSFES---------- 211 (417)
T ss_pred CCcCCEEEEEEEeC-----CCCcceEEEEcCCCCCCEEeecCCCc-----eecccCCCCCCEEEEEEcCC----------
Confidence 34578899987531 14567899999998888989865432 56789999999999975321
Q ss_pred CCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCCceecCCC-ceEeeeeeCCCCcEEEEEeecc
Q 005240 119 PLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHR 196 (706)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~ 196 (706)
...+||++++ +|+.+.++.. +....++|||||++|+|+....
T Consensus 212 ------------------------------------~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~ 255 (417)
T TIGR02800 212 ------------------------------------GKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKD 255 (417)
T ss_pred ------------------------------------CCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCC
Confidence 1257999999 5566666554 4556789999999999886543
Q ss_pred CcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccc
Q 005240 197 PYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRD 276 (706)
Q Consensus 197 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~ 276 (706)
. ..+|+++++++++.++++...... ....|+|||+. |+|.....+. .
T Consensus 256 ~----------~~~i~~~d~~~~~~~~l~~~~~~~-------------~~~~~s~dg~~-l~~~s~~~g~---------~ 302 (417)
T TIGR02800 256 G----------NPDIYVMDLDGKQLTRLTNGPGID-------------TEPSWSPDGKS-IAFTSDRGGS---------P 302 (417)
T ss_pred C----------CccEEEEECCCCCEEECCCCCCCC-------------CCEEECCCCCE-EEEEECCCCC---------c
Confidence 2 258999999988888887654321 14589999998 8777543221 2
Q ss_pred eeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCcccccccCCCCC
Q 005240 277 IIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSP 356 (706)
Q Consensus 277 ~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~ 356 (706)
.||++++ ++++.++++........+.|+|||+.|++..... +..+|+.+|++++ ..+.+.+... ..
T Consensus 303 ~iy~~d~---~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~-~~~~i~~~d~~~~--~~~~l~~~~~--------~~ 368 (417)
T TIGR02800 303 QIYMMDA---DGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREG-GGFNIAVMDLDGG--GERVLTDTGL--------DE 368 (417)
T ss_pred eEEEEEC---CCCCEEEeecCCCCccCeEECCCCCEEEEEEccC-CceEEEEEeCCCC--CeEEccCCCC--------CC
Confidence 5899998 6777777876666677899999999999876433 5668999999883 4455543211 12
Q ss_pred ceEeccCCCEEEEeeec
Q 005240 357 MMTRTSTGTNVIAKIKK 373 (706)
Q Consensus 357 ~~~~s~dg~~l~~~~~~ 373 (706)
.+.|+|||++|++....
T Consensus 369 ~p~~spdg~~l~~~~~~ 385 (417)
T TIGR02800 369 SPSFAPNGRMILYATTR 385 (417)
T ss_pred CceECCCCCEEEEEEeC
Confidence 35789999999988743
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.8e-19 Score=181.57 Aligned_cols=245 Identities=18% Similarity=0.176 Sum_probs=193.7
Q ss_pred ecccCCCEEEEEEecCCCCcEEEEEECCCCceeEeecCCCCCCCCCCCceEEEEEEccCCeEEEEEEEecCCCCCCCCCC
Q 005240 433 DINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTLASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGP 512 (706)
Q Consensus 433 ~~s~Dg~~l~~~~~~~~~p~~v~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~ 512 (706)
+-+.||..+.+..+++..|+.+|+.++.+++.+.+......+. ....+.|+...+++||+.||++|+. ++.+.. +
T Consensus 346 ~~~~~g~ev~l~~t~F~tP~~~~r~~~~~~eLe~ik~~p~~FD-a~~~~veQ~~atSkDGT~IPYFiv~-K~~~~d---~ 420 (648)
T COG1505 346 SADKDGDEVFLAFTSFTTPSTLYRLDLFGGELEVIREQPVQFD-ADNYEVEQFFATSKDGTRIPYFIVR-KGAKKD---E 420 (648)
T ss_pred cCCCCCcEEEEEeecccCCCceEEEecCCceehhhhhccCCcC-ccCceEEEEEEEcCCCccccEEEEe-cCCcCC---C
Confidence 3445688999999999999999999999998888876544333 2457889999999999999999998 764332 4
Q ss_pred ceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCCCCchhh---HHHHHHHHHHH
Q 005240 513 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRF---VEQLVSSAEAA 589 (706)
Q Consensus 513 ~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~~~---~~~~~~D~~~~ 589 (706)
.|++||.|||...+ -. ..|+ .....|.++|.+-+..|-||+..||.+|..... ....++|+.++
T Consensus 421 ~pTll~aYGGF~vs--------lt-P~fs----~~~~~WLerGg~~v~ANIRGGGEfGp~WH~Aa~k~nrq~vfdDf~AV 487 (648)
T COG1505 421 NPTLLYAYGGFNIS--------LT-PRFS----GSRKLWLERGGVFVLANIRGGGEFGPEWHQAGMKENKQNVFDDFIAV 487 (648)
T ss_pred CceEEEeccccccc--------cC-Cccc----hhhHHHHhcCCeEEEEecccCCccCHHHHHHHhhhcchhhhHHHHHH
Confidence 69999999995421 11 1232 223788999988877799998889988765433 33679999999
Q ss_pred HHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCCCCCC---------------Ccc---------
Q 005240 590 VEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLT---------------PFG--------- 645 (706)
Q Consensus 590 ~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d~~~~---------------~~~--------- 645 (706)
++.|+++++..|.++||+|.|-||.|+..++++.|+.|.|+++..|+.|+.-. |..
T Consensus 488 aedLi~rgitspe~lgi~GgSNGGLLvg~alTQrPelfgA~v~evPllDMlRYh~l~aG~sW~~EYG~Pd~P~d~~~l~~ 567 (648)
T COG1505 488 AEDLIKRGITSPEKLGIQGGSNGGLLVGAALTQRPELFGAAVCEVPLLDMLRYHLLTAGSSWIAEYGNPDDPEDRAFLLA 567 (648)
T ss_pred HHHHHHhCCCCHHHhhhccCCCCceEEEeeeccChhhhCceeeccchhhhhhhcccccchhhHhhcCCCCCHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999885421 000
Q ss_pred ------------c-----------------hHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccH-HHHHHHHHHHHHHHh
Q 005240 646 ------------F-----------------QAERFFDALKGHGALSRLVLLPFEHHVYAARENV-MHVIWETDRWLQKYC 695 (706)
Q Consensus 646 ------------~-----------------~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~-~~~~~~~~~f~~~~l 695 (706)
| .+.+|+.+|+..+.++-+.+=-++||.-..+... ......++.||.+.|
T Consensus 568 YSPy~nl~~g~kYP~~LITTs~~DDRVHPaHarKfaa~L~e~~~pv~~~e~t~gGH~g~~~~~~~A~~~a~~~afl~r~L 647 (648)
T COG1505 568 YSPYHNLKPGQKYPPTLITTSLHDDRVHPAHARKFAAKLQEVGAPVLLREETKGGHGGAAPTAEIARELADLLAFLLRTL 647 (648)
T ss_pred cCchhcCCccccCCCeEEEcccccccccchHHHHHHHHHHhcCCceEEEeecCCcccCCCChHHHHHHHHHHHHHHHHhh
Confidence 0 1119999999999998888878899987655443 456667888998876
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.4e-18 Score=181.67 Aligned_cols=229 Identities=19% Similarity=0.200 Sum_probs=165.2
Q ss_pred ccceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCc
Q 005240 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (706)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~ 83 (706)
...|++.+.+. +..++++.. +..+..|+|||||++|||+... .+..+||++++++++.++++.....
T Consensus 169 ~~~l~~~d~~g----~~~~~l~~~--~~~~~~p~~Spdg~~la~~~~~-------~~~~~i~v~d~~~g~~~~~~~~~~~ 235 (417)
T TIGR02800 169 RYELQVADYDG----ANPQTITRS--REPILSPAWSPDGQKLAYVSFE-------SGKPEIYVQDLATGQREKVASFPGM 235 (417)
T ss_pred cceEEEEcCCC----CCCEEeecC--CCceecccCCCCCCEEEEEEcC-------CCCcEEEEEECCCCCEEEeecCCCC
Confidence 34577777754 778888742 2247789999999999998742 3457899999999988887654432
Q ss_pred cccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEc
Q 005240 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (706)
Q Consensus 84 ~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~ 163 (706)
...+.|||||+.|+|..... +..+||+++
T Consensus 236 -----~~~~~~spDg~~l~~~~~~~----------------------------------------------~~~~i~~~d 264 (417)
T TIGR02800 236 -----NGAPAFSPDGSKLAVSLSKD----------------------------------------------GNPDIYVMD 264 (417)
T ss_pred -----ccceEECCCCCEEEEEECCC----------------------------------------------CCccEEEEE
Confidence 45689999999998874311 125799999
Q ss_pred cC-CCceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccC
Q 005240 164 LD-GTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVR 241 (706)
Q Consensus 164 l~-g~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~ 241 (706)
+. ++.++++.. .....+.|+|||++|+|.+.... ..+||++++++++.++++.....
T Consensus 265 ~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g----------~~~iy~~d~~~~~~~~l~~~~~~----------- 323 (417)
T TIGR02800 265 LDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGG----------SPQIYMMDADGGEVRRLTFRGGY----------- 323 (417)
T ss_pred CCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCC----------CceEEEEECCCCCEEEeecCCCC-----------
Confidence 94 577778766 44457899999999999876542 24899999998887777644221
Q ss_pred CCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccc
Q 005240 242 EGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKT 321 (706)
Q Consensus 242 ~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~ 321 (706)
...+.|||||+. |++..... .+..|+++|+ +++..+.++.. .....+.|+|||+.|++.+...
T Consensus 324 --~~~~~~spdg~~-i~~~~~~~---------~~~~i~~~d~---~~~~~~~l~~~-~~~~~p~~spdg~~l~~~~~~~- 386 (417)
T TIGR02800 324 --NASPSWSPDGDL-IAFVHREG---------GGFNIAVMDL---DGGGERVLTDT-GLDESPSFAPNGRMILYATTRG- 386 (417)
T ss_pred --ccCeEECCCCCE-EEEEEccC---------CceEEEEEeC---CCCCeEEccCC-CCCCCceECCCCCEEEEEEeCC-
Confidence 225689999987 77664321 1235899998 56666666543 3456789999999999987544
Q ss_pred cceEEEEEcCCCC
Q 005240 322 SQTRTWLVCPGSK 334 (706)
Q Consensus 322 ~~~~l~~~d~~~~ 334 (706)
+...||+++.++.
T Consensus 387 ~~~~l~~~~~~g~ 399 (417)
T TIGR02800 387 GRGVLGLVSTDGR 399 (417)
T ss_pred CcEEEEEEECCCc
Confidence 4567888887763
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.3e-17 Score=174.89 Aligned_cols=211 Identities=18% Similarity=0.227 Sum_probs=159.5
Q ss_pred CCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCC
Q 005240 30 GAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSR 109 (706)
Q Consensus 30 ~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~ 109 (706)
......|+|||||+.|+|..... .+...+|++++++++..++....+. ...++|||||++|+|.....
T Consensus 192 ~~~~~~p~ws~~~~~~~y~~f~~------~~~~~i~~~~l~~g~~~~i~~~~g~-----~~~P~fspDG~~l~f~~~rd- 259 (425)
T COG0823 192 GSLILTPAWSPDGKKLAYVSFEL------GGCPRIYYLDLNTGKRPVILNFNGN-----NGAPAFSPDGSKLAFSSSRD- 259 (425)
T ss_pred CcceeccccCcCCCceEEEEEec------CCCceEEEEeccCCccceeeccCCc-----cCCccCCCCCCEEEEEECCC-
Confidence 33577899999999999997531 2227899999999988888765543 46789999999999986432
Q ss_pred CCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCC-CceecCCC-ceEeeeeeCCCCc
Q 005240 110 RDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TAKDFGTP-AVYTAVEPSPDQK 187 (706)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g-~~~~lt~~-~~~~~~~~SpDG~ 187 (706)
+..+||++|+++ +..+|+.. +....+.|||||+
T Consensus 260 ---------------------------------------------g~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~ 294 (425)
T COG0823 260 ---------------------------------------------GSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGS 294 (425)
T ss_pred ---------------------------------------------CCccEEEEcCCCCcceecccCCccccCccCCCCCC
Confidence 226899999976 77778887 5666999999999
Q ss_pred EEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCC
Q 005240 188 YVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGD 267 (706)
Q Consensus 188 ~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~ 267 (706)
+|+|++.+.. ..+|++++++++..++++...+... ...|||||+. |+|.... .+.
T Consensus 295 ~ivf~Sdr~G----------~p~I~~~~~~g~~~~riT~~~~~~~-------------~p~~SpdG~~-i~~~~~~-~g~ 349 (425)
T COG0823 295 KIVFTSDRGG----------RPQIYLYDLEGSQVTRLTFSGGGNS-------------NPVWSPDGDK-IVFESSS-GGQ 349 (425)
T ss_pred EEEEEeCCCC----------CcceEEECCCCCceeEeeccCCCCc-------------CccCCCCCCE-EEEEecc-CCc
Confidence 9999988765 3599999999999999988765543 3389999998 8877522 222
Q ss_pred CccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCCC
Q 005240 268 ANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK 334 (706)
Q Consensus 268 ~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~ 334 (706)
. .+...++ .++...++.........+.|++||+.|+|.+... +...|+.+..++.
T Consensus 350 -~-------~i~~~~~---~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s~~~-~~~~l~~~s~~g~ 404 (425)
T COG0823 350 -W-------DIDKNDL---ASGGKIRILTSTYLNESPSWAPNGRMIMFSSGQG-GGSVLSLVSLDGR 404 (425)
T ss_pred -e-------eeEEecc---CCCCcEEEccccccCCCCCcCCCCceEEEeccCC-CCceEEEeeccce
Confidence 1 2566666 3333245555667778999999999999986444 5667888887773
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.5e-15 Score=152.02 Aligned_cols=341 Identities=11% Similarity=0.106 Sum_probs=174.8
Q ss_pred CCeeeeecCCCC---CcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEe
Q 005240 19 GPEKEVHGYPDG---AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWV 95 (706)
Q Consensus 19 g~~~~i~~~~~~---~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wS 95 (706)
-+.+|||..+.. ....+..|++||++|+|.+++ ++..+||++|+++++++|||.+++.. .-...+|
T Consensus 21 ~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~-------dg~~nly~lDL~t~~i~QLTdg~g~~----~~g~~~s 89 (386)
T PF14583_consen 21 HRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDF-------DGNRNLYLLDLATGEITQLTDGPGDN----TFGGFLS 89 (386)
T ss_dssp -EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-T-------TSS-EEEEEETTT-EEEE---SS-B-----TTT-EE-
T ss_pred ceEEEecCCCCcccceeecCCCcCCCCCEEEEEecc-------CCCcceEEEEcccCEEEECccCCCCC----ccceEEe
Confidence 355566533321 266789999999999998764 77899999999999999999876431 2256889
Q ss_pred cCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCC-CceecCCC
Q 005240 96 NNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TAKDFGTP 174 (706)
Q Consensus 96 pDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g-~~~~lt~~ 174 (706)
|+++.|+|... ..+|+.++|+. +.+.|...
T Consensus 90 ~~~~~~~Yv~~-------------------------------------------------~~~l~~vdL~T~e~~~vy~~ 120 (386)
T PF14583_consen 90 PDDRALYYVKN-------------------------------------------------GRSLRRVDLDTLEERVVYEV 120 (386)
T ss_dssp TTSSEEEEEET-------------------------------------------------TTEEEEEETTT--EEEEEE-
T ss_pred cCCCeEEEEEC-------------------------------------------------CCeEEEEECCcCcEEEEEEC
Confidence 99998877531 15799999944 65555433
Q ss_pred --ceE--eeeeeCCCCcEEEEEeeccCcccccc---------cccccceEEEEecCCCeeEEcccCCCCCCCCcccCccC
Q 005240 175 --AVY--TAVEPSPDQKYVLITSMHRPYSYKVP---------CARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVR 241 (706)
Q Consensus 175 --~~~--~~~~~SpDG~~i~~~~~~~~~~~~~~---------~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~ 241 (706)
... .......|++.++.....+......+ ...-.+.|+.+++.+++.+.+.....
T Consensus 121 p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~------------ 188 (386)
T PF14583_consen 121 PDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTD------------ 188 (386)
T ss_dssp -TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS------------
T ss_pred CcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCc------------
Confidence 222 33334578888877665443211000 11223789999999998888766542
Q ss_pred CCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeec--ccccccceecCCCceEEEEeec
Q 005240 242 EGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL--DLRFRSVSWCDDSLALVNETWY 319 (706)
Q Consensus 242 ~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~--~~~~~~~~wspDg~~l~~~~~~ 319 (706)
....+.+||.....|.|+-. +.-. .+ ..+||.++. +++..+.+... ...+..-.|+|||..|.|.+-.
T Consensus 189 -wlgH~~fsP~dp~li~fCHE--Gpw~--~V--d~RiW~i~~---dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~ 258 (386)
T PF14583_consen 189 -WLGHVQFSPTDPTLIMFCHE--GPWD--LV--DQRIWTINT---DGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYT 258 (386)
T ss_dssp --EEEEEEETTEEEEEEEEE---S-TT--TS--S-SEEEEET---TS---EESS---TTEEEEEEEE-TTSS-EEEEEEE
T ss_pred -cccCcccCCCCCCEEEEecc--CCcc--ee--ceEEEEEEc---CCCcceeeecCCCCcccccccccCCCCEEEEEeec
Confidence 12367899988776777732 2111 11 126899998 77777777543 3445566799999999987542
Q ss_pred c-ccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCcee
Q 005240 320 K-TSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLD 398 (706)
Q Consensus 320 ~-~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~ 398 (706)
. ....-|+.+|++++ +.+.+...+.. ..+.-++||+.++-.... . ...+- ...|..- ...+.|+
T Consensus 259 ~~~~~~~i~~~d~~t~--~~~~~~~~p~~--------~H~~ss~Dg~L~vGDG~d--~-p~~v~-~~~~~~~-~~~p~i~ 323 (386)
T PF14583_consen 259 PGGQDFWIAGYDPDTG--ERRRLMEMPWC--------SHFMSSPDGKLFVGDGGD--A-PVDVA-DAGGYKI-ENDPWIY 323 (386)
T ss_dssp TTT--EEEEEE-TTT----EEEEEEE-SE--------EEEEE-TTSSEEEEEE------------------------EEE
T ss_pred CCCCceEEEeeCCCCC--CceEEEeCCce--------eeeEEcCCCCEEEecCCC--C-Ccccc-cccccee-cCCcEEE
Confidence 3 23456888999985 34444322211 124458999987665321 0 11110 0011111 2356788
Q ss_pred eeecCCCceeeeecccchhhhhhhhhh-ccCCC-ceecccCCCEEEEEEecCCCCcEEEEEECC
Q 005240 399 LFDINTGSKERIWESNREKYFETAVAL-VFGQG-EEDINLNQLKILTSKESKTEITQYHILSWP 460 (706)
Q Consensus 399 ~~d~~~g~~~~l~~~~~~~~~~~~~~~-~~~~~-~~~~s~Dg~~l~~~~~~~~~p~~v~~~~~~ 460 (706)
++++.++...+|-..... . .+... ....+ .++|||||++++|+. +...++.||++++.
T Consensus 324 ~~~~~~~~~~~l~~h~~s--w-~v~~~~~q~~hPhp~FSPDgk~VlF~S-d~~G~~~vY~v~i~ 383 (386)
T PF14583_consen 324 LFDVEAGRFRKLARHDTS--W-KVLDGDRQVTHPHPSFSPDGKWVLFRS-DMEGPPAVYLVEIP 383 (386)
T ss_dssp EEETTTTEEEEEEE----------BTTBSSTT----EE-TTSSEEEEEE--TTSS-EEEEEE--
T ss_pred EeccccCceeeeeeccCc--c-eeecCCCccCCCCCccCCCCCEEEEEC-CCCCCccEEEEeCc
Confidence 899988877666443210 0 01000 00011 589999999999975 44688999998864
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.9e-16 Score=164.76 Aligned_cols=218 Identities=16% Similarity=0.130 Sum_probs=162.9
Q ss_pred CCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccc
Q 005240 59 SCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMT 138 (706)
Q Consensus 59 ~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (706)
....+||+.|-++-..+.++..... +..+.|+||++.|+|.+-..+.
T Consensus 170 ~~~~~l~~~D~dg~~~~~l~~~~~~-----~~~p~ws~~~~~~~y~~f~~~~---------------------------- 216 (425)
T COG0823 170 PLPYELALGDYDGYNQQKLTDSGSL-----ILTPAWSPDGKKLAYVSFELGG---------------------------- 216 (425)
T ss_pred CCCceEEEEccCCcceeEecccCcc-----eeccccCcCCCceEEEEEecCC----------------------------
Confidence 4568899999886666666654442 5678999999999987532111
Q ss_pred hhccCCchhhhhhhhcccceEEEEcc-CC-CceecCCCceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEec
Q 005240 139 DNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTT 216 (706)
Q Consensus 139 ~~~~~~~~d~~~~~~~~~~~l~~~~l-~g-~~~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~ 216 (706)
..++|++++ .| ..+.++..+....+.|||||++|+|...+.. ..+||++|+
T Consensus 217 -----------------~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg----------~~~iy~~dl 269 (425)
T COG0823 217 -----------------CPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDG----------SPDIYLMDL 269 (425)
T ss_pred -----------------CceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCC----------CccEEEEcC
Confidence 157999999 55 4445554467779999999999999998764 469999999
Q ss_pred CCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEee
Q 005240 217 DGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK 296 (706)
Q Consensus 217 ~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~ 296 (706)
.++..++|+...+.+..| .|||||+. |+|+++..+.- .||+++. +++..++++.
T Consensus 270 ~~~~~~~Lt~~~gi~~~P-------------s~spdG~~-ivf~Sdr~G~p---------~I~~~~~---~g~~~~riT~ 323 (425)
T COG0823 270 DGKNLPRLTNGFGINTSP-------------SWSPDGSK-IVFTSDRGGRP---------QIYLYDL---EGSQVTRLTF 323 (425)
T ss_pred CCCcceecccCCccccCc-------------cCCCCCCE-EEEEeCCCCCc---------ceEEECC---CCCceeEeec
Confidence 999988899888776555 89999999 99997554322 4999999 7888899987
Q ss_pred cccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEeee
Q 005240 297 LDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIK 372 (706)
Q Consensus 297 ~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 372 (706)
..+....|.|||||++|++.... .+...+...++.++. ..+.+....... .++|.++|+.+.+...
T Consensus 324 ~~~~~~~p~~SpdG~~i~~~~~~-~g~~~i~~~~~~~~~-~~~~lt~~~~~e--------~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 324 SGGGNSNPVWSPDGDKIVFESSS-GGQWDIDKNDLASGG-KIRILTSTYLNE--------SPSWAPNGRMIMFSSG 389 (425)
T ss_pred cCCCCcCccCCCCCCEEEEEecc-CCceeeEEeccCCCC-cEEEccccccCC--------CCCcCCCCceEEEecc
Confidence 77777799999999999998733 344678888887753 234443322211 2567999999988763
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.7e-16 Score=164.46 Aligned_cols=299 Identities=16% Similarity=0.187 Sum_probs=185.5
Q ss_pred cccceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCC
Q 005240 3 FFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD 82 (706)
Q Consensus 3 ~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~ 82 (706)
+...++|+++.. ++.++|... ......+.|||||++|||+.+ .+||+.++.+++.+|||..+.
T Consensus 21 ~~~~y~i~d~~~----~~~~~l~~~--~~~~~~~~~sP~g~~~~~v~~-----------~nly~~~~~~~~~~~lT~dg~ 83 (353)
T PF00930_consen 21 FKGDYYIYDIET----GEITPLTPP--PPKLQDAKWSPDGKYIAFVRD-----------NNLYLRDLATGQETQLTTDGE 83 (353)
T ss_dssp EEEEEEEEETTT----TEEEESS-E--ETTBSEEEE-SSSTEEEEEET-----------TEEEEESSTTSEEEESES--T
T ss_pred cceeEEEEecCC----CceEECcCC--ccccccceeecCCCeeEEEec-----------CceEEEECCCCCeEEeccccc
Confidence 456789999988 988888732 346889999999999999863 699999999999999997663
Q ss_pred cccc-c------------cccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccch--hccCCchh
Q 005240 83 ICLN-A------------VFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTD--NLLKDEYD 147 (706)
Q Consensus 83 ~~~~-~------------~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d 147 (706)
..+. + ....+-|||||++|+|..-+.+..... . .+.....+. .|. ..+.|+.-
T Consensus 84 ~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~-~------~~~~~~~~~-----~yp~~~~~~YPk~ 151 (353)
T PF00930_consen 84 PGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEY-P------LPDYSPPDS-----QYPEVESIRYPKA 151 (353)
T ss_dssp TTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EE-E------EEEESSSTE-----SS-EEEEEE--BT
T ss_pred eeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceE-E------eeccCCccc-----cCCcccccccCCC
Confidence 3211 1 123567999999999985443332100 0 000000000 000 01111111
Q ss_pred hhhhhhcccceEEEEccC-CCceecCC------C-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCC
Q 005240 148 ESLFDYYTTAQLVLGSLD-GTAKDFGT------P-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK 219 (706)
Q Consensus 148 ~~~~~~~~~~~l~~~~l~-g~~~~lt~------~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 219 (706)
|.-. ....|+++++. ++...+.. . ..+..+.|++|+++|++....+... ...+.++|+.++
T Consensus 152 G~~n---p~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~--------~~~l~~~d~~tg 220 (353)
T PF00930_consen 152 GDPN---PRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQN--------RLDLVLCDASTG 220 (353)
T ss_dssp TS------EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTST--------EEEEEEEEECTT
T ss_pred CCcC---CceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCC--------EEEEEEEECCCC
Confidence 1100 33689999994 45434321 1 5678999999999888777665432 357788888766
Q ss_pred eeEEcccCCCCCCCCcccCccCCCCcceeee-cCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecc
Q 005240 220 LVRELCDLPPAEDIPVCYNSVREGMRSISWR-ADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLD 298 (706)
Q Consensus 220 ~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~s-pdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~ 298 (706)
..+.+.... .+.|+. ....+.|. +++.. ++|+...++. ..||.++. +++.+++||...
T Consensus 221 ~~~~~~~e~----~~~Wv~----~~~~~~~~~~~~~~-~l~~s~~~G~---------~hly~~~~---~~~~~~~lT~G~ 279 (353)
T PF00930_consen 221 ETRVVLEET----SDGWVD----VYDPPHFLGPDGNE-FLWISERDGY---------RHLYLYDL---DGGKPRQLTSGD 279 (353)
T ss_dssp TCEEEEEEE----SSSSSS----SSSEEEE-TTTSSE-EEEEEETTSS---------EEEEEEET---TSSEEEESS-SS
T ss_pred ceeEEEEec----CCccee----eecccccccCCCCE-EEEEEEcCCC---------cEEEEEcc---cccceeccccCc
Confidence 555444221 111211 01244555 88887 7777664431 25999998 788888999888
Q ss_pred cccc-cceecCCCceEEEEeeccc-cceEEEEEcCC-CCCCCceeeecCcccccccCCCCCceEeccCCCEEEEee
Q 005240 299 LRFR-SVSWCDDSLALVNETWYKT-SQTRTWLVCPG-SKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 299 ~~~~-~~~wspDg~~l~~~~~~~~-~~~~l~~~d~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 371 (706)
..+. -+.|.++++.|+|.+.... ...+||+++++ + ++++.|+...... +.+++||||++++..-
T Consensus 280 ~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~--~~~~~LT~~~~~~-------~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 280 WEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSG--GEPKCLTCEDGDH-------YSASFSPDGKYYVDTY 346 (353)
T ss_dssp S-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTET--TEEEESSTTSSTT-------EEEEE-TTSSEEEEEE
T ss_pred eeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCC--CCeEeccCCCCCc-------eEEEECCCCCEEEEEE
Confidence 7774 4679999999999876533 67799999999 6 5678886544322 3477899999988765
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.4e-16 Score=151.37 Aligned_cols=192 Identities=18% Similarity=0.175 Sum_probs=145.2
Q ss_pred EEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcC
Q 005240 483 EMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGP 562 (706)
Q Consensus 483 ~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~ 562 (706)
+.+.+...| .++.+++.+|.. .++.|+||++|+-. +........+..|++.||+|+.++
T Consensus 3 ~~v~~~~~~-~~~~~~~a~P~~-----~~~~P~VIv~hei~---------------Gl~~~i~~~a~rlA~~Gy~v~~Pd 61 (236)
T COG0412 3 TDVTIPAPD-GELPAYLARPAG-----AGGFPGVIVLHEIF---------------GLNPHIRDVARRLAKAGYVVLAPD 61 (236)
T ss_pred cceEeeCCC-ceEeEEEecCCc-----CCCCCEEEEEeccc---------------CCchHHHHHHHHHHhCCcEEEech
Confidence 567788766 799999999986 23359999999731 112223466788999999999977
Q ss_pred CCCcCCCCCCCCc-h---h-------hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEE
Q 005240 563 SIPIIGEGDKLPN-D---R-------FVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGI 631 (706)
Q Consensus 563 ~~~~~g~g~~~~~-~---~-------~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v 631 (706)
-....|....... . . .......|+.++++||.+++.+|+.||+++|+||||.+|+.++.+.| .++|++
T Consensus 62 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~~~~L~~~~~~~~~~ig~~GfC~GG~~a~~~a~~~~-~v~a~v 140 (236)
T COG0412 62 LYGRQGDPTDIEDEPAELETGLVERVDPAEVLADIDAALDYLARQPQVDPKRIGVVGFCMGGGLALLAATRAP-EVKAAV 140 (236)
T ss_pred hhccCCCCCcccccHHHHhhhhhccCCHHHHHHHHHHHHHHHHhCCCCCCceEEEEEEcccHHHHHHhhcccC-CccEEE
Confidence 6654443222221 0 0 01467899999999999998899999999999999999999999986 899999
Q ss_pred eccCCCCCCC--------CCcc------------chHHHHHHHHHhCCCcEEEEEeCCCCccCCCcc----------cHH
Q 005240 632 ARSGSYNKTL--------TPFG------------FQAERFFDALKGHGALSRLVLLPFEHHVYAARE----------NVM 681 (706)
Q Consensus 632 ~~~~~~d~~~--------~~~~------------~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~----------~~~ 681 (706)
++.|..-... .|.. -..+.+.++|...++.+++.+|+++.|.|.+.. ...
T Consensus 141 ~fyg~~~~~~~~~~~~~~~pvl~~~~~~D~~~p~~~~~~~~~~~~~~~~~~~~~~y~ga~H~F~~~~~~~~~~y~~~aa~ 220 (236)
T COG0412 141 AFYGGLIADDTADAPKIKVPVLLHLAGEDPYIPAADVDALAAALEDAGVKVDLEIYPGAGHGFANDRADYHPGYDAAAAE 220 (236)
T ss_pred EecCCCCCCcccccccccCcEEEEecccCCCCChhHHHHHHHHHHhcCCCeeEEEeCCCccccccCCCcccccCCHHHHH
Confidence 9998654211 1111 122488899999989999999999999998542 146
Q ss_pred HHHHHHHHHHHHHhc
Q 005240 682 HVIWETDRWLQKYCL 696 (706)
Q Consensus 682 ~~~~~~~~f~~~~l~ 696 (706)
..++++++||++++.
T Consensus 221 ~a~~~~~~ff~~~~~ 235 (236)
T COG0412 221 DAWQRVLAFFKRLLG 235 (236)
T ss_pred HHHHHHHHHHHHhcc
Confidence 899999999999874
|
|
| >PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.2e-16 Score=151.95 Aligned_cols=180 Identities=21% Similarity=0.192 Sum_probs=124.4
Q ss_pred EEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCCCC
Q 005240 495 LTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLP 574 (706)
Q Consensus 495 i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~ 574 (706)
|.+++..|++- +|.|+||++|+- .+........+..|+++||.|+.++.....+......
T Consensus 1 ~~ay~~~P~~~-----~~~~~Vvv~~d~---------------~G~~~~~~~~ad~lA~~Gy~v~~pD~f~~~~~~~~~~ 60 (218)
T PF01738_consen 1 IDAYVARPEGG-----GPRPAVVVIHDI---------------FGLNPNIRDLADRLAEEGYVVLAPDLFGGRGAPPSDP 60 (218)
T ss_dssp EEEEEEEETTS-----SSEEEEEEE-BT---------------TBS-HHHHHHHHHHHHTT-EEEEE-CCCCTS--CCCH
T ss_pred CeEEEEeCCCC-----CCCCEEEEEcCC---------------CCCchHHHHHHHHHHhcCCCEEecccccCCCCCccch
Confidence 57899999862 358999999973 1121122356788999999999988865544101111
Q ss_pred -c-hhh--------HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCC-CC-----
Q 005240 575 -N-DRF--------VEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS-YN----- 638 (706)
Q Consensus 575 -~-~~~--------~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~-~d----- 638 (706)
. ... .+....|+.+++++|.+++.+++.||+++|+|+||.+++.++.+. ..++|+++..|. ..
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~~~~~~~kig~vGfc~GG~~a~~~a~~~-~~~~a~v~~yg~~~~~~~~~ 139 (218)
T PF01738_consen 61 EEAFAAMRELFAPRPEQVAADLQAAVDYLRAQPEVDPGKIGVVGFCWGGKLALLLAARD-PRVDAAVSFYGGSPPPPPLE 139 (218)
T ss_dssp HCHHHHHHHCHHHSHHHHHHHHHHHHHHHHCTTTCEEEEEEEEEETHHHHHHHHHHCCT-TTSSEEEEES-SSSGGGHHH
T ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccccCCCcEEEEEEecchHHhhhhhhhc-cccceEEEEcCCCCCCcchh
Confidence 1 111 235678899999999998878999999999999999999998887 789999999992 11
Q ss_pred ---CCCCCcc---------ch---HHHHHHHHHhCCCcEEEEEeCCCCccCCCccc-------HHHHHHHHHHHHHHHh
Q 005240 639 ---KTLTPFG---------FQ---AERFFDALKGHGALSRLVLLPFEHHVYAAREN-------VMHVIWETDRWLQKYC 695 (706)
Q Consensus 639 ---~~~~~~~---------~~---~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~-------~~~~~~~~~~f~~~~l 695 (706)
....|.. +. -+++.++|++.++++++.+|||++|+|..+.. ..+.++++++||++||
T Consensus 140 ~~~~~~~P~l~~~g~~D~~~~~~~~~~~~~~l~~~~~~~~~~~y~ga~HgF~~~~~~~~~~~aa~~a~~~~~~ff~~~L 218 (218)
T PF01738_consen 140 DAPKIKAPVLILFGENDPFFPPEEVEALEEALKAAGVDVEVHVYPGAGHGFANPSRPPYDPAAAEDAWQRTLAFFKRHL 218 (218)
T ss_dssp HGGG--S-EEEEEETT-TTS-HHHHHHHHHHHHCTTTTEEEEEETT--TTTTSTTSTT--HHHHHHHHHHHHHHHCC--
T ss_pred hhcccCCCEeecCccCCCCCChHHHHHHHHHHHhcCCcEEEEECCCCcccccCCCCcccCHHHHHHHHHHHHHHHHhcC
Confidence 0011211 11 23788999999999999999999999975432 4688999999999986
|
Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A. |
| >PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins | Back alignment and domain information |
|---|
Probab=99.63 E-value=7.1e-15 Score=149.11 Aligned_cols=192 Identities=21% Similarity=0.178 Sum_probs=127.1
Q ss_pred CCCceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeE
Q 005240 478 ASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFA 557 (706)
Q Consensus 478 ~~~~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~ 557 (706)
..++...|+|.+.+|..|.|++++|.+- ++++|+||.+||.+-. .. .......+++.||+
T Consensus 52 ~~~~vy~v~f~s~~g~~V~g~l~~P~~~----~~~~Pavv~~hGyg~~-------------~~---~~~~~~~~a~~G~~ 111 (320)
T PF05448_consen 52 PGVEVYDVSFESFDGSRVYGWLYRPKNA----KGKLPAVVQFHGYGGR-------------SG---DPFDLLPWAAAGYA 111 (320)
T ss_dssp SSEEEEEEEEEEGGGEEEEEEEEEES-S----SSSEEEEEEE--TT---------------GG---GHHHHHHHHHTT-E
T ss_pred CCEEEEEEEEEccCCCEEEEEEEecCCC----CCCcCEEEEecCCCCC-------------CC---CcccccccccCCeE
Confidence 4467788999999999999999999851 3469999999985310 00 11223457899999
Q ss_pred EEEcCCCCcCCC------------------CCCC-CchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHH
Q 005240 558 VLAGPSIPIIGE------------------GDKL-PNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAH 618 (706)
Q Consensus 558 v~~~~~~~~~g~------------------g~~~-~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~ 618 (706)
|+..+.+|..|. |... ....+...++.|...++++|.+++.+|++||+++|.|+||.++++
T Consensus 112 vl~~d~rGqg~~~~d~~~~~~~~~~g~~~~g~~~~~e~~yyr~~~~D~~ravd~l~slpevD~~rI~v~G~SqGG~lal~ 191 (320)
T PF05448_consen 112 VLAMDVRGQGGRSPDYRGSSGGTLKGHITRGIDDNPEDYYYRRVYLDAVRAVDFLRSLPEVDGKRIGVTGGSQGGGLALA 191 (320)
T ss_dssp EEEE--TTTSSSS-B-SSBSSS-SSSSTTTTTTS-TTT-HHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHH
T ss_pred EEEecCCCCCCCCCCccccCCCCCccHHhcCccCchHHHHHHHHHHHHHHHHHHHHhCCCcCcceEEEEeecCchHHHHH
Confidence 998555543321 1111 223356678899999999999999999999999999999999999
Q ss_pred HHHhCCCceeEEEeccCCCCC-C------C--CCcc----c---------------------------------------
Q 005240 619 LLAHAPHLFCCGIARSGSYNK-T------L--TPFG----F--------------------------------------- 646 (706)
Q Consensus 619 ~~~~~p~~~~a~v~~~~~~d~-~------~--~~~~----~--------------------------------------- 646 (706)
+++.+ ++++++++..|.+.. . . .|+. |
T Consensus 192 ~aaLd-~rv~~~~~~vP~l~d~~~~~~~~~~~~~y~~~~~~~~~~d~~~~~~~~v~~~L~Y~D~~nfA~ri~~pvl~~~g 270 (320)
T PF05448_consen 192 AAALD-PRVKAAAADVPFLCDFRRALELRADEGPYPEIRRYFRWRDPHHEREPEVFETLSYFDAVNFARRIKCPVLFSVG 270 (320)
T ss_dssp HHHHS-ST-SEEEEESESSSSHHHHHHHT--STTTHHHHHHHHHHSCTHCHHHHHHHHHHTT-HHHHGGG--SEEEEEEE
T ss_pred HHHhC-ccccEEEecCCCccchhhhhhcCCccccHHHHHHHHhccCCCcccHHHHHHHHhhhhHHHHHHHcCCCEEEEEe
Confidence 99999 679999988885421 1 0 1110 0
Q ss_pred ------hHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHH
Q 005240 647 ------QAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKY 694 (706)
Q Consensus 647 ------~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~~~~ 694 (706)
.+.-.+.+......+.++++||..+|.... ....++.++||.+|
T Consensus 271 l~D~~cPP~t~fA~yN~i~~~K~l~vyp~~~He~~~----~~~~~~~~~~l~~~ 320 (320)
T PF05448_consen 271 LQDPVCPPSTQFAAYNAIPGPKELVVYPEYGHEYGP----EFQEDKQLNFLKEH 320 (320)
T ss_dssp TT-SSS-HHHHHHHHCC--SSEEEEEETT--SSTTH----HHHHHHHHHHHHH-
T ss_pred cCCCCCCchhHHHHHhccCCCeeEEeccCcCCCchh----hHHHHHHHHHHhcC
Confidence 000444444444557899999999997642 33367899999875
|
Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F .... |
| >TIGR02821 fghA_ester_D S-formylglutathione hydrolase | Back alignment and domain information |
|---|
Probab=99.63 E-value=3e-14 Score=143.77 Aligned_cols=197 Identities=18% Similarity=0.216 Sum_probs=127.7
Q ss_pred CceEEEEEEcc-CCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHH-HCCeE
Q 005240 480 LQKEMIKYQRK-DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFL-ARRFA 557 (706)
Q Consensus 480 ~~~~~~~~~~~-dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~G~~ 557 (706)
.+.+.+++.+. .+.+++..+|+|+++... ++|+|+++||.+.. . ..+. .....+.++ +.||+
T Consensus 11 ~~~~~~~~~s~~~~~~~~~~v~~P~~~~~~---~~P~vvllHG~~~~--------~---~~~~--~~~~~~~la~~~g~~ 74 (275)
T TIGR02821 11 GTQGFYRHKSETCGVPMTFGVFLPPQAAAG---PVPVLWYLSGLTCT--------H---ENFM--IKAGAQRFAAEHGLA 74 (275)
T ss_pred CEEEEEEEeccccCCceEEEEEcCCCccCC---CCCEEEEccCCCCC--------c---cHHH--hhhHHHHHHhhcCcE
Confidence 35566666665 567899999999875332 48999999997421 1 1110 011233454 47999
Q ss_pred EEEcCC--CCcC--C--------CCCCCC-c---hhhH--HHHHHHHHHHHHHHHHc-CCCCCCcEEEEEechHHHHHHH
Q 005240 558 VLAGPS--IPII--G--------EGDKLP-N---DRFV--EQLVSSAEAAVEEVVRR-GVADPSRIAVGGHSYGAFMTAH 618 (706)
Q Consensus 558 v~~~~~--~~~~--g--------~g~~~~-~---~~~~--~~~~~D~~~~~~~l~~~-~~id~~~i~i~G~S~GG~~a~~ 618 (706)
|++++. +|.. + .+..+. + ..+. ......+...+..+++. ..+|+++++|+|+||||++|+.
T Consensus 75 Vv~Pd~~~~g~~~~~~~~~w~~g~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~S~GG~~a~~ 154 (275)
T TIGR02821 75 LVAPDTSPRGTGIAGEDDAWDFGKGAGFYVDATEEPWSQHYRMYSYIVQELPALVAAQFPLDGERQGITGHSMGGHGALV 154 (275)
T ss_pred EEEeCCCCCcCCCCCCcccccccCCccccccCCcCcccccchHHHHHHHHHHHHHHhhCCCCCCceEEEEEChhHHHHHH
Confidence 999776 2211 1 111110 0 0000 01122333333333343 3488999999999999999999
Q ss_pred HHHhCCCceeEEEeccCCCCCCCCC----------------------------------c-----------cc--hHHHH
Q 005240 619 LLAHAPHLFCCGIARSGSYNKTLTP----------------------------------F-----------GF--QAERF 651 (706)
Q Consensus 619 ~~~~~p~~~~a~v~~~~~~d~~~~~----------------------------------~-----------~~--~~~~~ 651 (706)
++.++|++|+++++.+|+.+....+ . .. +..++
T Consensus 155 ~a~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~plli~~G~~D~~v~~~~~~~~~ 234 (275)
T TIGR02821 155 IALKNPDRFKSVSAFAPIVAPSRCPWGQKAFSAYLGADEAAWRSYDASLLVADGGRHSTILIDQGTADQFLDEQLRPDAF 234 (275)
T ss_pred HHHhCcccceEEEEECCccCcccCcchHHHHHHHhcccccchhhcchHHHHhhcccCCCeeEeecCCCcccCccccHHHH
Confidence 9999999999999999885432100 0 00 12379
Q ss_pred HHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHh
Q 005240 652 FDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYC 695 (706)
Q Consensus 652 ~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~~~~l 695 (706)
.++|+++++++++++|||++|.|.. .....++.++|+.+++
T Consensus 235 ~~~l~~~g~~v~~~~~~g~~H~f~~---~~~~~~~~~~~~~~~~ 275 (275)
T TIGR02821 235 EQACRAAGQALTLRRQAGYDHSYYF---IASFIADHLRHHAERL 275 (275)
T ss_pred HHHHHHcCCCeEEEEeCCCCccchh---HHHhHHHHHHHHHhhC
Confidence 9999999999999999999999874 4566778888887753
|
This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well. |
| >PRK10162 acetyl esterase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.9e-14 Score=145.00 Aligned_cols=189 Identities=13% Similarity=0.138 Sum_probs=137.8
Q ss_pred ceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHH-CCeEEE
Q 005240 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA-RRFAVL 559 (706)
Q Consensus 481 ~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~G~~v~ 559 (706)
..+.+.+++.+| .|+..+|+|.. . +.|+|||+|||++.. ++...+ ...+..|++ .|+.|+
T Consensus 56 ~~~~~~i~~~~g-~i~~~~y~P~~---~---~~p~vv~~HGGg~~~--------g~~~~~----~~~~~~la~~~g~~Vv 116 (318)
T PRK10162 56 ATRAYMVPTPYG-QVETRLYYPQP---D---SQATLFYLHGGGFIL--------GNLDTH----DRIMRLLASYSGCTVI 116 (318)
T ss_pred eEEEEEEecCCC-ceEEEEECCCC---C---CCCEEEEEeCCcccC--------CCchhh----hHHHHHHHHHcCCEEE
Confidence 477788888777 69999999953 1 258999999997532 221111 134566776 699999
Q ss_pred EcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEEechHHHHHHHHHHhC------CCceeEE
Q 005240 560 AGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRR---GVADPSRIAVGGHSYGAFMTAHLLAHA------PHLFCCG 630 (706)
Q Consensus 560 ~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~---~~id~~~i~i~G~S~GG~~a~~~~~~~------p~~~~a~ 630 (706)
.++++..... . ....++|+.++++|+.+. --+|++||+|+|+|+||.||+.++.+. +.+++++
T Consensus 117 ~vdYrlape~--~------~p~~~~D~~~a~~~l~~~~~~~~~d~~~i~l~G~SaGG~la~~~a~~~~~~~~~~~~~~~~ 188 (318)
T PRK10162 117 GIDYTLSPEA--R------FPQAIEEIVAVCCYFHQHAEDYGINMSRIGFAGDSAGAMLALASALWLRDKQIDCGKVAGV 188 (318)
T ss_pred EecCCCCCCC--C------CCCcHHHHHHHHHHHHHhHHHhCCChhHEEEEEECHHHHHHHHHHHHHHhcCCCccChhhe
Confidence 9898754321 1 122478888999999764 237999999999999999999998652 3578889
Q ss_pred EeccCCCCCCCC----------------------------------Cc----------c---------------chHHHH
Q 005240 631 IARSGSYNKTLT----------------------------------PF----------G---------------FQAERF 651 (706)
Q Consensus 631 v~~~~~~d~~~~----------------------------------~~----------~---------------~~~~~~ 651 (706)
++.+|+++.... |. . -+.++|
T Consensus 189 vl~~p~~~~~~~~s~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~p~~~p~~~~l~~~lPp~~i~~g~~D~L~de~~~~ 268 (318)
T PRK10162 189 LLWYGLYGLRDSVSRRLLGGVWDGLTQQDLQMYEEAYLSNDADRESPYYCLFNNDLTRDVPPCFIAGAEFDPLLDDSRLL 268 (318)
T ss_pred EEECCccCCCCChhHHHhCCCccccCHHHHHHHHHHhCCCccccCCcccCcchhhhhcCCCCeEEEecCCCcCcChHHHH
Confidence 998887542100 00 0 023399
Q ss_pred HHHHHhCCCcEEEEEeCCCCccCCCc----ccHHHHHHHHHHHHHHHhc
Q 005240 652 FDALKGHGALSRLVLLPFEHHVYAAR----ENVMHVIWETDRWLQKYCL 696 (706)
Q Consensus 652 ~~~l~~~~~~~~~~~~~~~~H~~~~~----~~~~~~~~~~~~f~~~~l~ 696 (706)
.++|++.|+++++++|+|..|+|... ....+.++.+.+||+++++
T Consensus 269 ~~~L~~aGv~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~~~~~l~~~~~ 317 (318)
T PRK10162 269 YQTLAAHQQPCEFKLYPGTLHAFLHYSRMMDTADDALRDGAQFFTAQLK 317 (318)
T ss_pred HHHHHHcCCCEEEEEECCCceehhhccCchHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999998632 2246788899999999874
|
|
| >PLN02442 S-formylglutathione hydrolase | Back alignment and domain information |
|---|
Probab=99.60 E-value=9e-14 Score=140.51 Aligned_cols=196 Identities=21% Similarity=0.206 Sum_probs=124.4
Q ss_pred CceEEEEEEc-cCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEE
Q 005240 480 LQKEMIKYQR-KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAV 558 (706)
Q Consensus 480 ~~~~~~~~~~-~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v 558 (706)
...+.+++.+ .-|.+++..+|+|+. .++ +++|+|+++||.+.. ...|... ....+.+...||+|
T Consensus 16 ~~~~~~~~~s~~l~~~~~~~vy~P~~-~~~--~~~Pvv~~lHG~~~~--------~~~~~~~----~~~~~~~~~~g~~V 80 (283)
T PLN02442 16 GFNRRYKHFSSTLGCSMTFSVYFPPA-SDS--GKVPVLYWLSGLTCT--------DENFIQK----SGAQRAAAARGIAL 80 (283)
T ss_pred CEEEEEEEeccccCCceEEEEEcCCc-ccC--CCCCEEEEecCCCcC--------hHHHHHh----hhHHHHHhhcCeEE
Confidence 4556666666 367899999999984 222 359999999996421 0011100 11234456689999
Q ss_pred EEcCCC--CcC----------CCCCCCC----c-----hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHH
Q 005240 559 LAGPSI--PII----------GEGDKLP----N-----DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTA 617 (706)
Q Consensus 559 ~~~~~~--~~~----------g~g~~~~----~-----~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~ 617 (706)
+.++.. |.. +++..+. . ..+.....+++...++... ..+|+++++|+|+||||++|+
T Consensus 81 v~pd~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~--~~~~~~~~~i~G~S~GG~~a~ 158 (283)
T PLN02442 81 VAPDTSPRGLNVEGEADSWDFGVGAGFYLNATQEKWKNWRMYDYVVKELPKLLSDNF--DQLDTSRASIFGHSMGGHGAL 158 (283)
T ss_pred EecCCCCCCCCCCCCccccccCCCcceeeccccCCCcccchhhhHHHHHHHHHHHHH--HhcCCCceEEEEEChhHHHHH
Confidence 997753 211 1111110 0 0111223344433333322 236899999999999999999
Q ss_pred HHHHhCCCceeEEEeccCCCCCCCC-----------------------------------Cc-------------cchHH
Q 005240 618 HLLAHAPHLFCCGIARSGSYNKTLT-----------------------------------PF-------------GFQAE 649 (706)
Q Consensus 618 ~~~~~~p~~~~a~v~~~~~~d~~~~-----------------------------------~~-------------~~~~~ 649 (706)
.++.++|++|+++++.+|+++.... |. ..+..
T Consensus 159 ~~a~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~~~~~~~~~~pvli~~G~~D~~v~~~~~s~ 238 (283)
T PLN02442 159 TIYLKNPDKYKSVSAFAPIANPINCPWGQKAFTNYLGSDKADWEEYDATELVSKFNDVSATILIDQGEADKFLKEQLLPE 238 (283)
T ss_pred HHHHhCchhEEEEEEECCccCcccCchhhHHHHHHcCCChhhHHHcChhhhhhhccccCCCEEEEECCCCccccccccHH
Confidence 9999999999999999998763210 00 00234
Q ss_pred HHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHh
Q 005240 650 RFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYC 695 (706)
Q Consensus 650 ~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~~~~l 695 (706)
.++++|++.+.+++++++||++|.+. ......++.+.|..+++
T Consensus 239 ~~~~~l~~~g~~~~~~~~pg~~H~~~---~~~~~i~~~~~~~~~~~ 281 (283)
T PLN02442 239 NFEEACKEAGAPVTLRLQPGYDHSYF---FIATFIDDHINHHAQAL 281 (283)
T ss_pred HHHHHHHHcCCCeEEEEeCCCCccHH---HHHHHHHHHHHHHHHHh
Confidence 78999999999999999999999865 23344445555555554
|
|
| >PRK10566 esterase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.5e-14 Score=139.40 Aligned_cols=175 Identities=17% Similarity=0.215 Sum_probs=119.3
Q ss_pred EEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCCC
Q 005240 494 PLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKL 573 (706)
Q Consensus 494 ~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~ 573 (706)
.+..+.+.|..- . +++.|+||++||.+.. .. .....++.|+++||.|++++.++ +|.+.
T Consensus 11 ~~~~~~~~p~~~-~--~~~~p~vv~~HG~~~~-----------~~----~~~~~~~~l~~~G~~v~~~d~~g---~G~~~ 69 (249)
T PRK10566 11 GIEVLHAFPAGQ-R--DTPLPTVFFYHGFTSS-----------KL----VYSYFAVALAQAGFRVIMPDAPM---HGARF 69 (249)
T ss_pred CcceEEEcCCCC-C--CCCCCEEEEeCCCCcc-----------cc----hHHHHHHHHHhCCCEEEEecCCc---ccccC
Confidence 455677888641 1 2357999999996421 00 11245678889999999977764 33221
Q ss_pred C------chh---hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccC--CCC----
Q 005240 574 P------NDR---FVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSG--SYN---- 638 (706)
Q Consensus 574 ~------~~~---~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~--~~d---- 638 (706)
. ... .....++|+.++++++.+++.+|++||+++|+|+||+++++++.+.|+.. +++.+.+ .+.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~v~G~S~Gg~~al~~~~~~~~~~-~~~~~~~~~~~~~~~~ 148 (249)
T PRK10566 70 SGDEARRLNHFWQILLQNMQEFPTLRAAIREEGWLLDDRLAVGGASMGGMTALGIMARHPWVK-CVASLMGSGYFTSLAR 148 (249)
T ss_pred CCccccchhhHHHHHHHHHHHHHHHHHHHHhcCCcCccceeEEeecccHHHHHHHHHhCCCee-EEEEeeCcHHHHHHHH
Confidence 1 111 12345688889999999888899999999999999999999999987644 4333221 100
Q ss_pred ----C------------------------------C-CCCcc------------chHHHHHHHHHhCCCc--EEEEEeCC
Q 005240 639 ----K------------------------------T-LTPFG------------FQAERFFDALKGHGAL--SRLVLLPF 669 (706)
Q Consensus 639 ----~------------------------------~-~~~~~------------~~~~~~~~~l~~~~~~--~~~~~~~~ 669 (706)
. . ..|.. .+.++++++|+..+.+ ++++.|++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~P~Lii~G~~D~~v~~~~~~~l~~~l~~~g~~~~~~~~~~~~ 228 (249)
T PRK10566 149 TLFPPLIPETAAQQAEFNNIVAPLAEWEVTHQLEQLADRPLLLWHGLADDVVPAAESLRLQQALRERGLDKNLTCLWEPG 228 (249)
T ss_pred HhcccccccccccHHHHHHHHHHHhhcChhhhhhhcCCCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCCcceEEEecCC
Confidence 0 0 01111 0234889999998864 78999999
Q ss_pred CCccCCCcccHHHHHHHHHHHHHHHh
Q 005240 670 EHHVYAARENVMHVIWETDRWLQKYC 695 (706)
Q Consensus 670 ~~H~~~~~~~~~~~~~~~~~f~~~~l 695 (706)
++|.+. ...++.+.+||+++|
T Consensus 229 ~~H~~~-----~~~~~~~~~fl~~~~ 249 (249)
T PRK10566 229 VRHRIT-----PEALDAGVAFFRQHL 249 (249)
T ss_pred CCCccC-----HHHHHHHHHHHHhhC
Confidence 999875 257899999999875
|
|
| >PRK05077 frsA fermentation/respiration switch protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.7e-13 Score=145.39 Aligned_cols=189 Identities=21% Similarity=0.239 Sum_probs=127.3
Q ss_pred CceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEE
Q 005240 480 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 559 (706)
Q Consensus 480 ~~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~ 559 (706)
...|.++++..+|..|+|+++.|+. .+|.|+||++||. . +.. .......++.|+++||+|+
T Consensus 166 ~~~e~v~i~~~~g~~l~g~l~~P~~-----~~~~P~Vli~gG~-~-----------~~~--~~~~~~~~~~La~~Gy~vl 226 (414)
T PRK05077 166 GELKELEFPIPGGGPITGFLHLPKG-----DGPFPTVLVCGGL-D-----------SLQ--TDYYRLFRDYLAPRGIAML 226 (414)
T ss_pred CceEEEEEEcCCCcEEEEEEEECCC-----CCCccEEEEeCCc-c-----------cch--hhhHHHHHHHHHhCCCEEE
Confidence 4678999998888899999999973 1257988865542 1 100 0011134567889999999
Q ss_pred EcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCCC
Q 005240 560 AGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNK 639 (706)
Q Consensus 560 ~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d~ 639 (706)
+.+.+ |+|.+.... ...+......++++++.+.+.+|++||+++|+|+||++++.++.+.|++++|+|+.+|+++.
T Consensus 227 ~~D~p---G~G~s~~~~-~~~d~~~~~~avld~l~~~~~vd~~ri~l~G~S~GG~~Al~~A~~~p~ri~a~V~~~~~~~~ 302 (414)
T PRK05077 227 TIDMP---SVGFSSKWK-LTQDSSLLHQAVLNALPNVPWVDHTRVAAFGFRFGANVAVRLAYLEPPRLKAVACLGPVVHT 302 (414)
T ss_pred EECCC---CCCCCCCCC-ccccHHHHHHHHHHHHHhCcccCcccEEEEEEChHHHHHHHHHHhCCcCceEEEEECCccch
Confidence 97665 344332211 00111222357789999988899999999999999999999999998999999999887641
Q ss_pred CC--------CCc---------------c----------c----h----------------------HHHHHHHHHhCCC
Q 005240 640 TL--------TPF---------------G----------F----Q----------------------AERFFDALKGHGA 660 (706)
Q Consensus 640 ~~--------~~~---------------~----------~----~----------------------~~~~~~~l~~~~~ 660 (706)
.. .|. . + + +.+..+.|.....
T Consensus 303 ~~~~~~~~~~~p~~~~~~la~~lg~~~~~~~~l~~~l~~~sl~~~~~l~~~i~~PvLiI~G~~D~ivP~~~a~~l~~~~~ 382 (414)
T PRK05077 303 LLTDPKRQQQVPEMYLDVLASRLGMHDASDEALRVELNRYSLKVQGLLGRRCPTPMLSGYWKNDPFSPEEDSRLIASSSA 382 (414)
T ss_pred hhcchhhhhhchHHHHHHHHHHhCCCCCChHHHHHHhhhccchhhhhhccCCCCcEEEEecCCCCCCCHHHHHHHHHhCC
Confidence 10 000 0 0 0 0034444444444
Q ss_pred cEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHh
Q 005240 661 LSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYC 695 (706)
Q Consensus 661 ~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~~~~l 695 (706)
..+++++|+. |.+ .....+...+.+||+++|
T Consensus 383 ~~~l~~i~~~-~~~---e~~~~~~~~i~~wL~~~l 413 (414)
T PRK05077 383 DGKLLEIPFK-PVY---RNFDKALQEISDWLEDRL 413 (414)
T ss_pred CCeEEEccCC-Ccc---CCHHHHHHHHHHHHHHHh
Confidence 6788889986 333 256788999999999986
|
|
| >PLN02298 hydrolase, alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.53 E-value=9e-13 Score=137.44 Aligned_cols=140 Identities=15% Similarity=0.136 Sum_probs=103.4
Q ss_pred CCCCCceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCC
Q 005240 476 TLASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARR 555 (706)
Q Consensus 476 ~~~~~~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 555 (706)
....++.+...+...||.+|++..+.|++. ..+.|+||++||.+.. ..+ ....++..|++.|
T Consensus 26 ~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~----~~~~~~VvllHG~~~~------------~~~--~~~~~~~~L~~~G 87 (330)
T PLN02298 26 ALKGIKGSKSFFTSPRGLSLFTRSWLPSSS----SPPRALIFMVHGYGND------------ISW--TFQSTAIFLAQMG 87 (330)
T ss_pred hccCCccccceEEcCCCCEEEEEEEecCCC----CCCceEEEEEcCCCCC------------cce--ehhHHHHHHHhCC
Confidence 344567777788888999999999988641 1246899999995310 011 1113456688899
Q ss_pred eEEEEcCCCCcCCCCCCCCc---hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEe
Q 005240 556 FAVLAGPSIPIIGEGDKLPN---DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIA 632 (706)
Q Consensus 556 ~~v~~~~~~~~~g~g~~~~~---~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~ 632 (706)
|.|++.+.+ |+|.+... ....+..++|+.++++++......+..++.|+||||||.+++.++.++|++++++|+
T Consensus 88 y~V~~~D~r---GhG~S~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~~~~~i~l~GhSmGG~ia~~~a~~~p~~v~~lvl 164 (330)
T PLN02298 88 FACFALDLE---GHGRSEGLRAYVPNVDLVVEDCLSFFNSVKQREEFQGLPRFLYGESMGGAICLLIHLANPEGFDGAVL 164 (330)
T ss_pred CEEEEecCC---CCCCCCCccccCCCHHHHHHHHHHHHHHHHhcccCCCCCEEEEEecchhHHHHHHHhcCcccceeEEE
Confidence 999996665 55655321 124567789999999999876444556899999999999999999999999999999
Q ss_pred ccCC
Q 005240 633 RSGS 636 (706)
Q Consensus 633 ~~~~ 636 (706)
.+|.
T Consensus 165 ~~~~ 168 (330)
T PLN02298 165 VAPM 168 (330)
T ss_pred eccc
Confidence 8875
|
|
| >PF12715 Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8Y_A | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.2e-13 Score=137.92 Aligned_cols=154 Identities=19% Similarity=0.251 Sum_probs=92.4
Q ss_pred CCCceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCccc---CCCCCcCCCCchHHHHHHHC
Q 005240 478 ASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVR---GSPNEFSGMTPTSSLIFLAR 554 (706)
Q Consensus 478 ~~~~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~ 554 (706)
...+.|.+.|...++..++++++.|++. ++|.|+||++||.+.......+... .............+..|+++
T Consensus 84 dGY~~EKv~f~~~p~~~vpaylLvPd~~----~~p~PAVL~lHgHg~~Ke~~~g~~gv~~~~~~~~~~~~~~~g~~LAk~ 159 (390)
T PF12715_consen 84 DGYTREKVEFNTTPGSRVPAYLLVPDGA----KGPFPAVLCLHGHGGGKEKMAGEDGVSPDLKDDYDDPKQDYGDQLAKR 159 (390)
T ss_dssp TTEEEEEEEE--STTB-EEEEEEEETT------S-EEEEEEE--TT--HHHHCT---SSGCG--STTSTTT-HHHHHHTT
T ss_pred CCeEEEEEEEEccCCeeEEEEEEecCCC----CCCCCEEEEeCCCCCCcccccCCcccccccchhhccccccHHHHHHhC
Confidence 4568899999999999999999999873 4579999999986432111111100 00001111123457889999
Q ss_pred CeEEEEcCCCCcCCCCCCCC-----c--------------hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHH
Q 005240 555 RFAVLAGPSIPIIGEGDKLP-----N--------------DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFM 615 (706)
Q Consensus 555 G~~v~~~~~~~~~g~g~~~~-----~--------------~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~ 615 (706)
||+|++++..+...++.... . ..+.....-|.+.+++||..++.||++|||++|+||||+.
T Consensus 160 GYVvla~D~~g~GER~~~e~~~~~~~~~~~~la~~~l~lG~S~~G~~~~ddmr~lDfL~slpeVD~~RIG~~GfSmGg~~ 239 (390)
T PF12715_consen 160 GYVVLAPDALGFGERGDMEGAAQGSNYDCQALARNLLMLGRSLAGLMAWDDMRALDFLASLPEVDPDRIGCMGFSMGGYR 239 (390)
T ss_dssp TSEEEEE--TTSGGG-SSCCCTTTTS--HHHHHHHHHHTT--HHHHHHHHHHHHHHHHCT-TTEEEEEEEEEEEGGGHHH
T ss_pred CCEEEEEccccccccccccccccccchhHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHhcCcccCccceEEEeecccHHH
Confidence 99999865543221111100 0 1112234567778999999999999999999999999999
Q ss_pred HHHHHHhCCCceeEEEeccCC
Q 005240 616 TAHLLAHAPHLFCCGIARSGS 636 (706)
Q Consensus 616 a~~~~~~~p~~~~a~v~~~~~ 636 (706)
+.++++.+ ++++|+|+.+-+
T Consensus 240 a~~LaALD-dRIka~v~~~~l 259 (390)
T PF12715_consen 240 AWWLAALD-DRIKATVANGYL 259 (390)
T ss_dssp HHHHHHH--TT--EEEEES-B
T ss_pred HHHHHHcc-hhhHhHhhhhhh
Confidence 99999999 788888876543
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.2e-11 Score=116.56 Aligned_cols=291 Identities=14% Similarity=0.105 Sum_probs=173.8
Q ss_pred cceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCcc
Q 005240 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~ 84 (706)
-+|++.+|++ +.|+...+....+....+.++|+|++++|+ +...++ ..+...-|.+|.+.|+...+-+....+
T Consensus 16 ~gI~v~~ld~--~~g~l~~~~~v~~~~nptyl~~~~~~~~LY-~v~~~~----~~ggvaay~iD~~~G~Lt~ln~~~~~g 88 (346)
T COG2706 16 QGIYVFNLDT--KTGELSLLQLVAELGNPTYLAVNPDQRHLY-VVNEPG----EEGGVAAYRIDPDDGRLTFLNRQTLPG 88 (346)
T ss_pred CceEEEEEeC--cccccchhhhccccCCCceEEECCCCCEEE-EEEecC----CcCcEEEEEEcCCCCeEEEeeccccCC
Confidence 4688888876 567777666555555788999999999994 444321 156677888887778877664322210
Q ss_pred ccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc
Q 005240 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (706)
Q Consensus 85 ~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l 164 (706)
...-.++.++||+.|+..... . +.|-+..+
T Consensus 89 --~~p~yvsvd~~g~~vf~AnY~-~-----------------------------------------------g~v~v~p~ 118 (346)
T COG2706 89 --SPPCYVSVDEDGRFVFVANYH-S-----------------------------------------------GSVSVYPL 118 (346)
T ss_pred --CCCeEEEECCCCCEEEEEEcc-C-----------------------------------------------ceEEEEEc
Confidence 012356788999987765321 1 12222222
Q ss_pred --CCCceec---CC----------C-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCC
Q 005240 165 --DGTAKDF---GT----------P-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLP 228 (706)
Q Consensus 165 --~g~~~~l---t~----------~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 228 (706)
+|.+..+ .. . .......+.|||++|+...... .+|++|+++.++........
T Consensus 119 ~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~------------Dri~~y~~~dg~L~~~~~~~ 186 (346)
T COG2706 119 QADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGT------------DRIFLYDLDDGKLTPADPAE 186 (346)
T ss_pred ccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCC------------ceEEEEEcccCccccccccc
Confidence 2311111 00 0 2355778999999998776553 48999999866544433322
Q ss_pred CCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEe---ec------cc
Q 005240 229 PAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH---KL------DL 299 (706)
Q Consensus 229 ~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~---~~------~~ 299 (706)
.. | ..|+|.+.|+|+++. +|.+...++.- .++.++. ..++.++|. .. ..
T Consensus 187 v~---~------G~GPRHi~FHpn~k~-aY~v~EL~stV---------~v~~y~~---~~g~~~~lQ~i~tlP~dF~g~~ 244 (346)
T COG2706 187 VK---P------GAGPRHIVFHPNGKY-AYLVNELNSTV---------DVLEYNP---AVGKFEELQTIDTLPEDFTGTN 244 (346)
T ss_pred cC---C------CCCcceEEEcCCCcE-EEEEeccCCEE---------EEEEEcC---CCceEEEeeeeccCccccCCCC
Confidence 21 1 156889999999995 55554433211 2444443 345555442 11 22
Q ss_pred ccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEeeeccCCcce
Q 005240 300 RFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQI 379 (706)
Q Consensus 300 ~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~ 379 (706)
....+..++||+.|+.. ++......+|.+|.+++ ....+.-.+.+. ..|.. +.+++.|++|++....
T Consensus 245 ~~aaIhis~dGrFLYas-NRg~dsI~~f~V~~~~g--~L~~~~~~~teg--~~PR~--F~i~~~g~~Liaa~q~------ 311 (346)
T COG2706 245 WAAAIHISPDGRFLYAS-NRGHDSIAVFSVDPDGG--KLELVGITPTEG--QFPRD--FNINPSGRFLIAANQK------ 311 (346)
T ss_pred ceeEEEECCCCCEEEEe-cCCCCeEEEEEEcCCCC--EEEEEEEeccCC--cCCcc--ceeCCCCCEEEEEccC------
Confidence 34456679999977764 45445667888888874 333332112111 12444 4458999998887532
Q ss_pred EEEEecCCCCCCCCCCceeeeecCCCceeeee
Q 005240 380 YILLNGRGFTPEGNIPFLDLFDINTGSKERIW 411 (706)
Q Consensus 380 ~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~ 411 (706)
++...++++|.+||+...+.
T Consensus 312 ------------sd~i~vf~~d~~TG~L~~~~ 331 (346)
T COG2706 312 ------------SDNITVFERDKETGRLTLLG 331 (346)
T ss_pred ------------CCcEEEEEEcCCCceEEecc
Confidence 44557888999999766553
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.3e-11 Score=122.29 Aligned_cols=267 Identities=13% Similarity=0.032 Sum_probs=156.5
Q ss_pred cceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCcc
Q 005240 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~ 84 (706)
..|++.++.. ++..+.. ........+.|+|||+.++.+. .....|+++|+.+++..+.......
T Consensus 11 ~~v~~~d~~t----~~~~~~~--~~~~~~~~l~~~~dg~~l~~~~---------~~~~~v~~~d~~~~~~~~~~~~~~~- 74 (300)
T TIGR03866 11 NTISVIDTAT----LEVTRTF--PVGQRPRGITLSKDGKLLYVCA---------SDSDTIQVIDLATGEVIGTLPSGPD- 74 (300)
T ss_pred CEEEEEECCC----CceEEEE--ECCCCCCceEECCCCCEEEEEE---------CCCCeEEEEECCCCcEEEeccCCCC-
Confidence 4688888866 5543332 2333467799999999875543 2336789999988876543222221
Q ss_pred ccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc
Q 005240 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (706)
Q Consensus 85 ~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l 164 (706)
...+.|+|||+.|++... ....|+++|+
T Consensus 75 ----~~~~~~~~~g~~l~~~~~------------------------------------------------~~~~l~~~d~ 102 (300)
T TIGR03866 75 ----PELFALHPNGKILYIANE------------------------------------------------DDNLVTVIDI 102 (300)
T ss_pred ----ccEEEECCCCCEEEEEcC------------------------------------------------CCCeEEEEEC
Confidence 456789999998766531 1146778888
Q ss_pred CC-C-ceecCCCceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCC
Q 005240 165 DG-T-AKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVRE 242 (706)
Q Consensus 165 ~g-~-~~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~ 242 (706)
.. + ...+........++|+|||+.+++..... ..+..|+..+.+........ .
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~------------~~~~~~d~~~~~~~~~~~~~-------------~ 157 (300)
T TIGR03866 103 ETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETT------------NMAHFIDTKTYEIVDNVLVD-------------Q 157 (300)
T ss_pred CCCeEEeEeeCCCCcceEEECCCCCEEEEEecCC------------CeEEEEeCCCCeEEEEEEcC-------------C
Confidence 43 3 22332223456789999999998765432 24666787755443211111 1
Q ss_pred CCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCc-eEEeec-------ccccccceecCCCceEE
Q 005240 243 GMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP-EILHKL-------DLRFRSVSWCDDSLALV 314 (706)
Q Consensus 243 g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~-~~l~~~-------~~~~~~~~wspDg~~l~ 314 (706)
.+..+.|+|||+. |++.... .+.++++|+ ++++. +.+... ......+.|+|||+.++
T Consensus 158 ~~~~~~~s~dg~~-l~~~~~~-----------~~~v~i~d~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~ 222 (300)
T TIGR03866 158 RPRFAEFTADGKE-LWVSSEI-----------GGTVSVIDV---ATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAF 222 (300)
T ss_pred CccEEEECCCCCE-EEEEcCC-----------CCEEEEEEc---CcceeeeeeeecccccccccCCccceEECCCCCEEE
Confidence 1235789999986 5543211 124778888 44443 333211 11223577999999876
Q ss_pred EEeeccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCC
Q 005240 315 NETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNI 394 (706)
Q Consensus 315 ~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~ 394 (706)
.... ....|.++|+.+. +....... ......+.|+|||++|+.... ..
T Consensus 223 ~~~~---~~~~i~v~d~~~~--~~~~~~~~-------~~~~~~~~~~~~g~~l~~~~~--------------------~~ 270 (300)
T TIGR03866 223 VALG---PANRVAVVDAKTY--EVLDYLLV-------GQRVWQLAFTPDEKYLLTTNG--------------------VS 270 (300)
T ss_pred EEcC---CCCeEEEEECCCC--cEEEEEEe-------CCCcceEEECCCCCEEEEEcC--------------------CC
Confidence 5432 1235888888764 22221110 012234778999999876531 11
Q ss_pred CceeeeecCCCceeeee
Q 005240 395 PFLDLFDINTGSKERIW 411 (706)
Q Consensus 395 ~~l~~~d~~~g~~~~l~ 411 (706)
..|..+|+.+++..+-+
T Consensus 271 ~~i~v~d~~~~~~~~~~ 287 (300)
T TIGR03866 271 NDVSVIDVAALKVIKSI 287 (300)
T ss_pred CeEEEEECCCCcEEEEE
Confidence 24777888888754433
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.6e-11 Score=123.49 Aligned_cols=292 Identities=17% Similarity=0.137 Sum_probs=148.8
Q ss_pred ccceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCc
Q 005240 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (706)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~ 83 (706)
..++++.||++ ++++|||..+... .....+||+++.|+|..+ ..+|+.+|+++.+.+.|...+..
T Consensus 59 ~~nly~lDL~t----~~i~QLTdg~g~~-~~g~~~s~~~~~~~Yv~~----------~~~l~~vdL~T~e~~~vy~~p~~ 123 (386)
T PF14583_consen 59 NRNLYLLDLAT----GEITQLTDGPGDN-TFGGFLSPDDRALYYVKN----------GRSLRRVDLDTLEERVVYEVPDD 123 (386)
T ss_dssp S-EEEEEETTT-----EEEE---SS-B--TTT-EE-TTSSEEEEEET----------TTEEEEEETTT--EEEEEE--TT
T ss_pred CcceEEEEccc----CEEEECccCCCCC-ccceEEecCCCeEEEEEC----------CCeEEEEECCcCcEEEEEECCcc
Confidence 46899999988 9999999655432 336889999999999752 26899999999999998876654
Q ss_pred cccccccceEEe--cCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEE
Q 005240 84 CLNAVFGSFVWV--NNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (706)
Q Consensus 84 ~~~~~~~~~~wS--pDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~ 161 (706)
-...-.|+ .|++.++..... +... ..+-.+......+.-.....|+.
T Consensus 124 ----~~g~gt~v~n~d~t~~~g~e~~-~~d~--------------------------~~l~~~~~f~e~~~a~p~~~i~~ 172 (386)
T PF14583_consen 124 ----WKGYGTWVANSDCTKLVGIEIS-REDW--------------------------KPLTKWKGFREFYEARPHCRIFT 172 (386)
T ss_dssp ----EEEEEEEEE-TTSSEEEEEEEE-GGG-------------------------------SHHHHHHHHHC---EEEEE
T ss_pred ----cccccceeeCCCccEEEEEEEe-ehhc--------------------------cCccccHHHHHHHhhCCCceEEE
Confidence 12245775 467766544211 1100 00000001111111124478999
Q ss_pred Ecc-CCCceecCCC-ceEeeeeeCC-CCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccC
Q 005240 162 GSL-DGTAKDFGTP-AVYTAVEPSP-DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYN 238 (706)
Q Consensus 162 ~~l-~g~~~~lt~~-~~~~~~~~Sp-DG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~ 238 (706)
+++ +|+.+.+... .-..-+-+|| |...|+|-... +. .....+||+++.+|+..+.+......+
T Consensus 173 idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEG-pw------~~Vd~RiW~i~~dg~~~~~v~~~~~~e------- 238 (386)
T PF14583_consen 173 IDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEG-PW------DLVDQRIWTINTDGSNVKKVHRRMEGE------- 238 (386)
T ss_dssp EETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S--T------TTSS-SEEEEETTS---EESS---TTE-------
T ss_pred EECCCCceeEEEecCccccCcccCCCCCCEEEEeccC-Cc------ceeceEEEEEEcCCCcceeeecCCCCc-------
Confidence 999 6788777655 4455667787 66677775543 32 222468999999999888886543111
Q ss_pred ccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEee
Q 005240 239 SVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETW 318 (706)
Q Consensus 239 ~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~ 318 (706)
....--|+|||+. |+|.....++..+. |+.+|+ ++++.+.+...+ ....+.-++||+.++--..
T Consensus 239 ----~~gHEfw~~DG~~-i~y~~~~~~~~~~~-------i~~~d~---~t~~~~~~~~~p-~~~H~~ss~Dg~L~vGDG~ 302 (386)
T PF14583_consen 239 ----SVGHEFWVPDGST-IWYDSYTPGGQDFW-------IAGYDP---DTGERRRLMEMP-WCSHFMSSPDGKLFVGDGG 302 (386)
T ss_dssp ----EEEEEEE-TTSS--EEEEEEETTT--EE-------EEEE-T---TT--EEEEEEE--SEEEEEE-TTSSEEEEEE-
T ss_pred ----ccccccccCCCCE-EEEEeecCCCCceE-------EEeeCC---CCCCceEEEeCC-ceeeeEEcCCCCEEEecCC
Confidence 1123469999998 88776555544432 667777 667666664433 3445666889997764322
Q ss_pred cc------------ccceEEEEEcCCCCCCCceeeecCcccccc----cCCCCCceEeccCCCEEEEeeec
Q 005240 319 YK------------TSQTRTWLVCPGSKDVAPRVLFDRVFENVY----SDPGSPMMTRTSTGTNVIAKIKK 373 (706)
Q Consensus 319 ~~------------~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~s~dg~~l~~~~~~ 373 (706)
.. ....-||++++..+ ....|......... ..+.-+.++|||||++|+|.++.
T Consensus 303 d~p~~v~~~~~~~~~~~p~i~~~~~~~~--~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~ 371 (386)
T PF14583_consen 303 DAPVDVADAGGYKIENDPWIYLFDVEAG--RFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDM 371 (386)
T ss_dssp ------------------EEEEEETTTT--EEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-T
T ss_pred CCCccccccccceecCCcEEEEeccccC--ceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCC
Confidence 11 01235788888763 44444322211110 01123568899999999999865
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.1e-10 Score=120.03 Aligned_cols=275 Identities=11% Similarity=0.030 Sum_probs=157.1
Q ss_pred ceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchh
Q 005240 61 KLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDN 140 (706)
Q Consensus 61 ~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (706)
...|+++|+++++..+....... +..+.|+|||+.++....
T Consensus 10 d~~v~~~d~~t~~~~~~~~~~~~-----~~~l~~~~dg~~l~~~~~---------------------------------- 50 (300)
T TIGR03866 10 DNTISVIDTATLEVTRTFPVGQR-----PRGITLSKDGKLLYVCAS---------------------------------- 50 (300)
T ss_pred CCEEEEEECCCCceEEEEECCCC-----CCceEECCCCCEEEEEEC----------------------------------
Confidence 35888999988876655433222 567899999998765531
Q ss_pred ccCCchhhhhhhhcccceEEEEcc-CCCce-ecCCCceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCC
Q 005240 141 LLKDEYDESLFDYYTTAQLVLGSL-DGTAK-DFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG 218 (706)
Q Consensus 141 ~~~~~~d~~~~~~~~~~~l~~~~l-~g~~~-~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 218 (706)
....|+++++ +++.. .+........+.|+|||+.++++... ...+.+||+.+
T Consensus 51 --------------~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~------------~~~l~~~d~~~ 104 (300)
T TIGR03866 51 --------------DSDTIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIANED------------DNLVTVIDIET 104 (300)
T ss_pred --------------CCCeEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEEcCC------------CCeEEEEECCC
Confidence 1156788888 45443 34333345678899999988765432 24799999986
Q ss_pred CeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecc
Q 005240 219 KLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLD 298 (706)
Q Consensus 219 ~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~ 298 (706)
.+........ ..+..+.|+|||+. ++... .+ ...++.+|. .+++........
T Consensus 105 ~~~~~~~~~~-------------~~~~~~~~~~dg~~-l~~~~-~~----------~~~~~~~d~---~~~~~~~~~~~~ 156 (300)
T TIGR03866 105 RKVLAEIPVG-------------VEPEGMAVSPDGKI-VVNTS-ET----------TNMAHFIDT---KTYEIVDNVLVD 156 (300)
T ss_pred CeEEeEeeCC-------------CCcceEEECCCCCE-EEEEe-cC----------CCeEEEEeC---CCCeEEEEEEcC
Confidence 5432211110 11236799999986 54332 11 112445566 444332222223
Q ss_pred cccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCcccccccCC-CCCceEeccCCCEEEEeeeccCCc
Q 005240 299 LRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDP-GSPMMTRTSTGTNVIAKIKKENDE 377 (706)
Q Consensus 299 ~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~~ 377 (706)
.....+.|+|||+.|++.... ...|+++|+.+++ ....+. .......... ....+.++|||+++++....
T Consensus 157 ~~~~~~~~s~dg~~l~~~~~~---~~~v~i~d~~~~~-~~~~~~-~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~---- 227 (300)
T TIGR03866 157 QRPRFAEFTADGKELWVSSEI---GGTVSVIDVATRK-VIKKIT-FEIPGVHPEAVQPVGIKLTKDGKTAFVALGP---- 227 (300)
T ss_pred CCccEEEECCCCCEEEEEcCC---CCEEEEEEcCcce-eeeeee-ecccccccccCCccceEECCCCCEEEEEcCC----
Confidence 345568899999988765422 2358888888742 112221 1110000000 01136689999987654311
Q ss_pred ceEEEEecCCCCCCCCCCceeeeecCCCceeeeecccchhhhhhhhhhccCCCceecccCCCEEEEEEecCCCCcEEEEE
Q 005240 378 QIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHIL 457 (706)
Q Consensus 378 ~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~p~~v~~~ 457 (706)
...+..+|+.+++..+...... ....+.|+|||++|+.+.. .-..|.+|
T Consensus 228 ----------------~~~i~v~d~~~~~~~~~~~~~~------------~~~~~~~~~~g~~l~~~~~---~~~~i~v~ 276 (300)
T TIGR03866 228 ----------------ANRVAVVDAKTYEVLDYLLVGQ------------RVWQLAFTPDEKYLLTTNG---VSNDVSVI 276 (300)
T ss_pred ----------------CCeEEEEECCCCcEEEEEEeCC------------CcceEEECCCCCEEEEEcC---CCCeEEEE
Confidence 1136677887776654332111 1224689999997765422 22369999
Q ss_pred ECCCCce-eEee
Q 005240 458 SWPLKKS-SQIT 468 (706)
Q Consensus 458 ~~~~~~~-~~lt 468 (706)
|+.+++. .++.
T Consensus 277 d~~~~~~~~~~~ 288 (300)
T TIGR03866 277 DVAALKVIKSIK 288 (300)
T ss_pred ECCCCcEEEEEE
Confidence 9988775 4443
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.3e-12 Score=122.27 Aligned_cols=283 Identities=16% Similarity=0.181 Sum_probs=157.3
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~ 111 (706)
.+-.++|||||++||.. .|...+.++|+.+..+.....+..+ -+..++|||||++|+..+.
T Consensus 117 ~Vl~~~fsp~g~~l~tG----------sGD~TvR~WD~~TeTp~~t~KgH~~----WVlcvawsPDgk~iASG~~----- 177 (480)
T KOG0271|consen 117 AVLSVQFSPTGSRLVTG----------SGDTTVRLWDLDTETPLFTCKGHKN----WVLCVAWSPDGKKIASGSK----- 177 (480)
T ss_pred cEEEEEecCCCceEEec----------CCCceEEeeccCCCCcceeecCCcc----EEEEEEECCCcchhhcccc-----
Confidence 57788999999999885 4556777778777665444333322 3778999999999996642
Q ss_pred CCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CC--CceecCCC-ceEeeeee-----
Q 005240 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG--TAKDFGTP-AVYTAVEP----- 182 (706)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g--~~~~lt~~-~~~~~~~~----- 182 (706)
.+.|-++|. +| ..+.|... ..+..++|
T Consensus 178 --------------------------------------------dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl 213 (480)
T KOG0271|consen 178 --------------------------------------------DGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHL 213 (480)
T ss_pred --------------------------------------------CCeEEEecCCCCCcccccccCcccceeEEeeccccc
Confidence 156777776 55 33445544 44555554
Q ss_pred CCCCcEEEEEeeccCcccccccccccceEEEEecCCCe-eEEcccCCCCCCCCcccCccCCCCcceeee--cCCCceEE-
Q 005240 183 SPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL-VRELCDLPPAEDIPVCYNSVREGMRSISWR--ADKPSTLY- 258 (706)
Q Consensus 183 SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~~~~~p~~~~~~~~g~~~~~~s--pdg~~~l~- 258 (706)
.|+.++|+-.+.+ ..+.+||+..+. ++.+..+..+-+ .+..|-..+-+| .|+.-.++
T Consensus 214 ~p~~r~las~skD-------------g~vrIWd~~~~~~~~~lsgHT~~VT------CvrwGG~gliySgS~DrtIkvw~ 274 (480)
T KOG0271|consen 214 VPPCRRLASSSKD-------------GSVRIWDTKLGTCVRTLSGHTASVT------CVRWGGEGLIYSGSQDRTIKVWR 274 (480)
T ss_pred CCCccceecccCC-------------CCEEEEEccCceEEEEeccCccceE------EEEEcCCceEEecCCCceEEEEE
Confidence 5677777654433 378899988554 333333321110 011110011111 11110000
Q ss_pred ---------------EEEecc---------------------------------------CCCCccccCccceeeeecCC
Q 005240 259 ---------------WVEAQD---------------------------------------RGDANVEVSPRDIIYTQPAE 284 (706)
Q Consensus 259 ---------------~~~~~~---------------------------------------~~~~~~~~~~~~~l~~~d~~ 284 (706)
|+...+ .++.-....+...+|+|+.
T Consensus 275 a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p- 353 (480)
T KOG0271|consen 275 ALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNP- 353 (480)
T ss_pred ccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecc-
Confidence 000000 0000011123346888875
Q ss_pred CCCCC-CceEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccC
Q 005240 285 PAEGE-KPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTST 363 (706)
Q Consensus 285 ~~~~~-~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~d 363 (706)
.... .+++++.+...+..+.||||+++|+.++-++ ..+|| +..++ +....+.+.+..+|. ++||.|
T Consensus 354 -~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDk--SVkLW--~g~tG--k~lasfRGHv~~VYq------vawsaD 420 (480)
T KOG0271|consen 354 -FKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDK--SVKLW--DGRTG--KFLASFRGHVAAVYQ------VAWSAD 420 (480)
T ss_pred -cccccchhhhhchhhheeeEEECCCccEEEEeeccc--ceeee--eCCCc--chhhhhhhccceeEE------EEeccC
Confidence 2333 2346778888899999999999999876433 34454 44453 333334555555544 889999
Q ss_pred CCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeeecccchhhhhhhhhhccCCCceecccCCCEEE
Q 005240 364 GTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKIL 442 (706)
Q Consensus 364 g~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~ 442 (706)
.+.|+....+ ..|..+++.+.+...=..+.. +....++|||||.+++
T Consensus 421 sRLlVS~SkD---------------------sTLKvw~V~tkKl~~DLpGh~-----------DEVf~vDwspDG~rV~ 467 (480)
T KOG0271|consen 421 SRLLVSGSKD---------------------STLKVWDVRTKKLKQDLPGHA-----------DEVFAVDWSPDGQRVA 467 (480)
T ss_pred ccEEEEcCCC---------------------ceEEEEEeeeeeecccCCCCC-----------ceEEEEEecCCCceee
Confidence 9887765421 135566665544322111111 1122478999998776
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.4e-11 Score=118.44 Aligned_cols=280 Identities=9% Similarity=0.060 Sum_probs=179.6
Q ss_pred eeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEE
Q 005240 22 KEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLL 101 (706)
Q Consensus 22 ~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l 101 (706)
+.+-.++.. ++.|.+- |.+|+|+++. ++..+||..|++|...++=|+... .-.=.-+.||++|
T Consensus 219 eK~vdl~~~--vS~PmIV--~~RvYFlsD~-------eG~GnlYSvdldGkDlrrHTnFtd------YY~R~~nsDGkrI 281 (668)
T COG4946 219 EKFVDLDGN--VSSPMIV--GERVYFLSDH-------EGVGNLYSVDLDGKDLRRHTNFTD------YYPRNANSDGKRI 281 (668)
T ss_pred eeeeecCCC--cCCceEE--cceEEEEecc-------cCccceEEeccCCchhhhcCCchh------ccccccCCCCcEE
Confidence 334445555 7777776 8899998864 788999999999999888876543 1111346799999
Q ss_pred EEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCC-CceecCCC------
Q 005240 102 IFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TAKDFGTP------ 174 (706)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g-~~~~lt~~------ 174 (706)
+|.. .+.||++|.+. ..+.|.-+
T Consensus 282 vFq~--------------------------------------------------~GdIylydP~td~lekldI~lpl~rk 311 (668)
T COG4946 282 VFQN--------------------------------------------------AGDIYLYDPETDSLEKLDIGLPLDRK 311 (668)
T ss_pred EEec--------------------------------------------------CCcEEEeCCCcCcceeeecCCccccc
Confidence 9862 25677777633 33333211
Q ss_pred ---c----eEeeee-eCC-CCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCc
Q 005240 175 ---A----VYTAVE-PSP-DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMR 245 (706)
Q Consensus 175 ---~----~~~~~~-~Sp-DG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~ 245 (706)
. ....+. +|+ +|.+|++++.. +.++.+...+-.-++... .+++
T Consensus 312 ~k~~k~~~pskyledfa~~~Gd~ia~VSRG--------------kaFi~~~~~~~~iqv~~~--------------~~Vr 363 (668)
T COG4946 312 KKQPKFVNPSKYLEDFAVVNGDYIALVSRG--------------KAFIMRPWDGYSIQVGKK--------------GGVR 363 (668)
T ss_pred cccccccCHHHhhhhhccCCCcEEEEEecC--------------cEEEECCCCCeeEEcCCC--------------CceE
Confidence 0 000111 343 88999988865 456666555444443222 2233
Q ss_pred ceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccccceE
Q 005240 246 SISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTR 325 (706)
Q Consensus 246 ~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~ 325 (706)
.-.++-|+.. ++.- ... .+.|-+.|. ++++++++...-+.+..+..++||+.++.+. ....
T Consensus 364 Y~r~~~~~e~-~vig--t~d---------gD~l~iyd~---~~~e~kr~e~~lg~I~av~vs~dGK~~vvaN----dr~e 424 (668)
T COG4946 364 YRRIQVDPEG-DVIG--TND---------GDKLGIYDK---DGGEVKRIEKDLGNIEAVKVSPDGKKVVVAN----DRFE 424 (668)
T ss_pred EEEEccCCcc-eEEe--ccC---------CceEEEEec---CCceEEEeeCCccceEEEEEcCCCcEEEEEc----CceE
Confidence 3345555554 3211 122 234777888 7899999988889999999999999888753 3457
Q ss_pred EEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCC
Q 005240 326 TWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTG 405 (706)
Q Consensus 326 l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g 405 (706)
||.+|++++ +++.+ +.+-... ...+.|+|++++|++.--. . .| ...+.++|.+++
T Consensus 425 l~vididng--nv~~i-dkS~~~l-----Itdf~~~~nsr~iAYafP~-----g-y~-----------tq~Iklydm~~~ 479 (668)
T COG4946 425 LWVIDIDNG--NVRLI-DKSEYGL-----ITDFDWHPNSRWIAYAFPE-----G-YY-----------TQSIKLYDMDGG 479 (668)
T ss_pred EEEEEecCC--CeeEe-cccccce-----eEEEEEcCCceeEEEecCc-----c-ee-----------eeeEEEEecCCC
Confidence 999999994 44544 3322211 2247899999999987411 1 11 125778999998
Q ss_pred ceeeeecccchhhhhhhhhhccCCCceecccCCCEEEEEEecCCCCc
Q 005240 406 SKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEIT 452 (706)
Q Consensus 406 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~p~ 452 (706)
+.-.++.... -+..++|.|||++|.|...+.-.|.
T Consensus 480 Kiy~vTT~ta------------~DfsPaFD~d~ryLYfLs~RsLdPs 514 (668)
T COG4946 480 KIYDVTTPTA------------YDFSPAFDPDGRYLYFLSARSLDPS 514 (668)
T ss_pred eEEEecCCcc------------cccCcccCCCCcEEEEEeccccCCC
Confidence 8877764432 2336899999999999877666554
|
|
| >PRK13604 luxD acyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=4e-12 Score=125.83 Aligned_cols=129 Identities=12% Similarity=0.005 Sum_probs=90.8
Q ss_pred EEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCC
Q 005240 485 IKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSI 564 (706)
Q Consensus 485 ~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~ 564 (706)
-.+.+.||..|.||+..|++-+ ..|.|+||++||=. .. . .....++..|+++||+|+.-+.+
T Consensus 12 ~~~~~~dG~~L~Gwl~~P~~~~---~~~~~~vIi~HGf~-----------~~-~---~~~~~~A~~La~~G~~vLrfD~r 73 (307)
T PRK13604 12 HVICLENGQSIRVWETLPKENS---PKKNNTILIASGFA-----------RR-M---DHFAGLAEYLSSNGFHVIRYDSL 73 (307)
T ss_pred heEEcCCCCEEEEEEEcCcccC---CCCCCEEEEeCCCC-----------CC-h---HHHHHHHHHHHHCCCEEEEecCC
Confidence 3456679999999999997522 22468999999831 11 0 11335678899999999996654
Q ss_pred CcCCCCCCCCc--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCC
Q 005240 565 PIIGEGDKLPN--DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYN 638 (706)
Q Consensus 565 ~~~g~g~~~~~--~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d 638 (706)
+..| ++... .........|+.++++|++++ +..+|+++||||||..++.++... .++++|+.+|..+
T Consensus 74 g~~G--eS~G~~~~~t~s~g~~Dl~aaid~lk~~---~~~~I~LiG~SmGgava~~~A~~~--~v~~lI~~sp~~~ 142 (307)
T PRK13604 74 HHVG--LSSGTIDEFTMSIGKNSLLTVVDWLNTR---GINNLGLIAASLSARIAYEVINEI--DLSFLITAVGVVN 142 (307)
T ss_pred CCCC--CCCCccccCcccccHHHHHHHHHHHHhc---CCCceEEEEECHHHHHHHHHhcCC--CCCEEEEcCCccc
Confidence 4322 22111 111122368999999999886 346899999999999987666644 4899999999877
|
|
| >PLN02385 hydrolase; alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.1e-11 Score=130.22 Aligned_cols=133 Identities=13% Similarity=0.043 Sum_probs=96.6
Q ss_pred eEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCC-chHHHHHHHCCeEEEE
Q 005240 482 KEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMT-PTSSLIFLARRFAVLA 560 (706)
Q Consensus 482 ~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~G~~v~~ 560 (706)
.++....+.||.+|.+..+.|++- .+.|+||++||.+.. .... ...+..|++.||.|+.
T Consensus 61 ~~~~~~~~~~g~~l~~~~~~p~~~-----~~~~~iv~lHG~~~~---------------~~~~~~~~~~~l~~~g~~v~~ 120 (349)
T PLN02385 61 TEESYEVNSRGVEIFSKSWLPENS-----RPKAAVCFCHGYGDT---------------CTFFFEGIARKIASSGYGVFA 120 (349)
T ss_pred eeeeeEEcCCCCEEEEEEEecCCC-----CCCeEEEEECCCCCc---------------cchHHHHHHHHHHhCCCEEEE
Confidence 444555567999999999999741 235899999995311 0111 1345677889999999
Q ss_pred cCCCCcCCCCCCCCc---hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCC
Q 005240 561 GPSIPIIGEGDKLPN---DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSY 637 (706)
Q Consensus 561 ~~~~~~~g~g~~~~~---~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~ 637 (706)
.+.+ |+|.+... .......++|+.+.++++..+...++.++.++||||||.+++.++.++|++++++|+.+|..
T Consensus 121 ~D~~---G~G~S~~~~~~~~~~~~~~~dv~~~l~~l~~~~~~~~~~~~LvGhSmGG~val~~a~~~p~~v~glVLi~p~~ 197 (349)
T PLN02385 121 MDYP---GFGLSEGLHGYIPSFDDLVDDVIEHYSKIKGNPEFRGLPSFLFGQSMGGAVALKVHLKQPNAWDGAILVAPMC 197 (349)
T ss_pred ecCC---CCCCCCCCCCCcCCHHHHHHHHHHHHHHHHhccccCCCCEEEEEeccchHHHHHHHHhCcchhhheeEecccc
Confidence 6665 55555332 12346678888888888866544456789999999999999999999999999999988753
|
|
| >COG0657 Aes Esterase/lipase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.1e-12 Score=130.41 Aligned_cols=183 Identities=18% Similarity=0.170 Sum_probs=128.4
Q ss_pred ccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCC
Q 005240 489 RKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIG 568 (706)
Q Consensus 489 ~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g 568 (706)
...+..++..+|.|.. ....+.|+|||+|||++.. ++.... .......++..|+.|+.++|+-...
T Consensus 58 ~~~~~~~~~~~y~p~~---~~~~~~p~vly~HGGg~~~--------g~~~~~---~~~~~~~~~~~g~~vv~vdYrlaPe 123 (312)
T COG0657 58 GPSGDGVPVRVYRPDR---KAAATAPVVLYLHGGGWVL--------GSLRTH---DALVARLAAAAGAVVVSVDYRLAPE 123 (312)
T ss_pred CCCCCceeEEEECCCC---CCCCCCcEEEEEeCCeeee--------cChhhh---HHHHHHHHHHcCCEEEecCCCCCCC
Confidence 3455568899999922 1123479999999997642 221111 1233455567999999999974433
Q ss_pred CCCCCCchhhHHHHHHHHHHHHHHHHHcC---CCCCCcEEEEEechHHHHHHHHHHhCCC----ceeEEEeccCCCCCCC
Q 005240 569 EGDKLPNDRFVEQLVSSAEAAVEEVVRRG---VADPSRIAVGGHSYGAFMTAHLLAHAPH----LFCCGIARSGSYNKTL 641 (706)
Q Consensus 569 ~g~~~~~~~~~~~~~~D~~~~~~~l~~~~---~id~~~i~i~G~S~GG~~a~~~~~~~p~----~~~a~v~~~~~~d~~~ 641 (706)
+ .+...+.|+.+++.|+.++. -+|+++|+|+|+|.||+|++.++..-.+ ..++.+...|..|...
T Consensus 124 ~--------~~p~~~~d~~~a~~~l~~~~~~~g~dp~~i~v~GdSAGG~La~~~a~~~~~~~~~~p~~~~li~P~~d~~~ 195 (312)
T COG0657 124 H--------PFPAALEDAYAAYRWLRANAAELGIDPSRIAVAGDSAGGHLALALALAARDRGLPLPAAQVLISPLLDLTS 195 (312)
T ss_pred C--------CCCchHHHHHHHHHHHHhhhHhhCCCccceEEEecCcccHHHHHHHHHHHhcCCCCceEEEEEecccCCcc
Confidence 2 12345778889999999763 3899999999999999999999866533 5688888888876442
Q ss_pred -CC--------------------------------------cc---------------------chHHHHHHHHHhCCCc
Q 005240 642 -TP--------------------------------------FG---------------------FQAERFFDALKGHGAL 661 (706)
Q Consensus 642 -~~--------------------------------------~~---------------------~~~~~~~~~l~~~~~~ 661 (706)
.+ .. -+.+.+.++|++.|++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~spl~~~~~~~lPP~~i~~a~~D~l~~~~~~~a~~L~~agv~ 275 (312)
T COG0657 196 SAASLPGYGEADLLDAAAILAWFADLYLGAAPDREDPEASPLASDDLSGLPPTLIQTAEFDPLRDEGEAYAERLRAAGVP 275 (312)
T ss_pred cccchhhcCCccccCHHHHHHHHHHHhCcCccccCCCccCccccccccCCCCEEEEecCCCcchhHHHHHHHHHHHcCCe
Confidence 00 00 0223999999999999
Q ss_pred EEEEEeCCCCccCCC--cccHHHHHHHHHHHHHH
Q 005240 662 SRLVLLPFEHHVYAA--RENVMHVIWETDRWLQK 693 (706)
Q Consensus 662 ~~~~~~~~~~H~~~~--~~~~~~~~~~~~~f~~~ 693 (706)
+++..||+..|.|.. .......+..+.+||++
T Consensus 276 ~~~~~~~g~~H~f~~~~~~~a~~~~~~~~~~l~~ 309 (312)
T COG0657 276 VELRVYPGMIHGFDLLTGPEARSALRQIAAFLRA 309 (312)
T ss_pred EEEEEeCCcceeccccCcHHHHHHHHHHHHHHHH
Confidence 999999999999843 22344556777777774
|
|
| >KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.7e-11 Score=123.65 Aligned_cols=194 Identities=16% Similarity=0.133 Sum_probs=137.4
Q ss_pred CCceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHH-HCCeE
Q 005240 479 SLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFL-ARRFA 557 (706)
Q Consensus 479 ~~~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~G~~ 557 (706)
.+....+.+... ..++..||+|..-.+. .+.|+|||+|||++..++... ..+..+...++ +.+.+
T Consensus 60 ~v~~~dv~~~~~--~~l~vRly~P~~~~~~--~~~p~lvyfHGGGf~~~S~~~----------~~y~~~~~~~a~~~~~v 125 (336)
T KOG1515|consen 60 GVTSKDVTIDPF--TNLPVRLYRPTSSSSE--TKLPVLVYFHGGGFCLGSANS----------PAYDSFCTRLAAELNCV 125 (336)
T ss_pred CceeeeeEecCC--CCeEEEEEcCCCCCcc--cCceEEEEEeCCccEeCCCCC----------chhHHHHHHHHHHcCeE
Confidence 344556666643 4689999999875441 248999999999876432211 12234555665 58999
Q ss_pred EEEcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHc----CCCCCCcEEEEEechHHHHHHHHHHhC------CCce
Q 005240 558 VLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRR----GVADPSRIAVGGHSYGAFMTAHLLAHA------PHLF 627 (706)
Q Consensus 558 v~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~----~~id~~~i~i~G~S~GG~~a~~~~~~~------p~~~ 627 (706)
|+.++||-.. +.. ....++|...|+.|+.++ ..+|++||+|+|.|.||.+|..++.+. +-.+
T Consensus 126 vvSVdYRLAP----Eh~----~Pa~y~D~~~Al~w~~~~~~~~~~~D~~rv~l~GDSaGGNia~~va~r~~~~~~~~~ki 197 (336)
T KOG1515|consen 126 VVSVDYRLAP----EHP----FPAAYDDGWAALKWVLKNSWLKLGADPSRVFLAGDSAGGNIAHVVAQRAADEKLSKPKI 197 (336)
T ss_pred EEecCcccCC----CCC----CCccchHHHHHHHHHHHhHHHHhCCCcccEEEEccCccHHHHHHHHHHHhhccCCCcce
Confidence 9999987332 212 233478888999999885 448999999999999999999988553 3578
Q ss_pred eEEEeccCCCCCCC----------------------------CC-------------cc-c-------------------
Q 005240 628 CCGIARSGSYNKTL----------------------------TP-------------FG-F------------------- 646 (706)
Q Consensus 628 ~a~v~~~~~~d~~~----------------------------~~-------------~~-~------------------- 646 (706)
++.|+..|.+.... .| .. .
T Consensus 198 ~g~ili~P~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~w~~~lP~~~~~~~~p~~np~~~~~~~d~~~~~lp~tlv~~ag 277 (336)
T KOG1515|consen 198 KGQILIYPFFQGTDRTESEKQQNLNGSPELARPKIDKWWRLLLPNGKTDLDHPFINPVGNSLAKDLSGLGLPPTLVVVAG 277 (336)
T ss_pred EEEEEEecccCCCCCCCHHHHHhhcCCcchhHHHHHHHHHHhCCCCCCCcCCccccccccccccCccccCCCceEEEEeC
Confidence 99999999864221 01 00 0
Q ss_pred ------hHHHHHHHHHhCCCcEEEEEeCCCCccCCC--c--ccHHHHHHHHHHHHHHH
Q 005240 647 ------QAERFFDALKGHGALSRLVLLPFEHHVYAA--R--ENVMHVIWETDRWLQKY 694 (706)
Q Consensus 647 ------~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~--~--~~~~~~~~~~~~f~~~~ 694 (706)
+...+.++|++.|++++++.++++.|.|.. + ........++.+|+++.
T Consensus 278 ~D~L~D~~~~Y~~~Lkk~Gv~v~~~~~e~~~H~~~~~~~~~~~a~~~~~~i~~fi~~~ 335 (336)
T KOG1515|consen 278 YDVLRDEGLAYAEKLKKAGVEVTLIHYEDGFHGFHILDPSSKEAHALMDAIVEFIKSN 335 (336)
T ss_pred chhhhhhhHHHHHHHHHcCCeEEEEEECCCeeEEEecCCchhhHHHHHHHHHHHHhhc
Confidence 111899999999999999999999998852 2 24567888888888764
|
|
| >COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.3e-12 Score=120.37 Aligned_cols=140 Identities=17% Similarity=0.101 Sum_probs=105.4
Q ss_pred CCCceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeE
Q 005240 478 ASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFA 557 (706)
Q Consensus 478 ~~~~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~ 557 (706)
..+++=.++|++.+|..|.||+++|..- ++++|+||..||= ...++ .+.-...|+..||+
T Consensus 52 ~~ve~ydvTf~g~~g~rI~gwlvlP~~~----~~~~P~vV~fhGY----------~g~~g------~~~~~l~wa~~Gya 111 (321)
T COG3458 52 PRVEVYDVTFTGYGGARIKGWLVLPRHE----KGKLPAVVQFHGY----------GGRGG------EWHDMLHWAVAGYA 111 (321)
T ss_pred CceEEEEEEEeccCCceEEEEEEeeccc----CCccceEEEEeec----------cCCCC------Ccccccccccccee
Confidence 4467888999999999999999999861 2469999999972 11111 11123457889999
Q ss_pred EEEcCCCCcCCCCC---------CCC-----------chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHH
Q 005240 558 VLAGPSIPIIGEGD---------KLP-----------NDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTA 617 (706)
Q Consensus 558 v~~~~~~~~~g~g~---------~~~-----------~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~ 617 (706)
|+.++.||-.+..+ ... ..-++...+.|+..+++-+.....+|+.||++.|+|.||.+++
T Consensus 112 vf~MdvRGQg~~~~dt~~~p~~~s~pG~mtrGilD~kd~yyyr~v~~D~~~ave~~~sl~~vde~Ri~v~G~SqGGglal 191 (321)
T COG3458 112 VFVMDVRGQGSSSQDTADPPGGPSDPGFMTRGILDRKDTYYYRGVFLDAVRAVEILASLDEVDEERIGVTGGSQGGGLAL 191 (321)
T ss_pred EEEEecccCCCccccCCCCCCCCcCCceeEeecccCCCceEEeeehHHHHHHHHHHhccCccchhheEEeccccCchhhh
Confidence 99866665443311 000 0112345689999999999999999999999999999999999
Q ss_pred HHHHhCCCceeEEEeccCCCC
Q 005240 618 HLLAHAPHLFCCGIARSGSYN 638 (706)
Q Consensus 618 ~~~~~~p~~~~a~v~~~~~~d 638 (706)
.+++.. .+++++++..|...
T Consensus 192 aaaal~-~rik~~~~~~Pfl~ 211 (321)
T COG3458 192 AAAALD-PRIKAVVADYPFLS 211 (321)
T ss_pred hhhhcC-hhhhcccccccccc
Confidence 999999 69999999999754
|
|
| >KOG1455 consensus Lysophospholipase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.2e-11 Score=116.86 Aligned_cols=138 Identities=14% Similarity=0.090 Sum_probs=102.9
Q ss_pred CCceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCC-CCchHHHHHHHCCeE
Q 005240 479 SLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSG-MTPTSSLIFLARRFA 557 (706)
Q Consensus 479 ~~~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~G~~ 557 (706)
.+....-.+.+.+|..+....+.|..-+ .|..+|+++||-+. ... .+...+..|++.||.
T Consensus 24 ~~~~~~~~~~n~rG~~lft~~W~p~~~~----~pr~lv~~~HG~g~---------------~~s~~~~~~a~~l~~~g~~ 84 (313)
T KOG1455|consen 24 GVTYSESFFTNPRGAKLFTQSWLPLSGT----EPRGLVFLCHGYGE---------------HSSWRYQSTAKRLAKSGFA 84 (313)
T ss_pred ccceeeeeEEcCCCCEeEEEecccCCCC----CCceEEEEEcCCcc---------------cchhhHHHHHHHHHhCCCe
Confidence 3455666677789999999999996521 24678999998531 111 122467889999999
Q ss_pred EEEcCCCCcCCCCCCCCc---hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEecc
Q 005240 558 VLAGPSIPIIGEGDKLPN---DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARS 634 (706)
Q Consensus 558 v~~~~~~~~~g~g~~~~~---~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~ 634 (706)
|+..+.. |+|.+... -...+..++|+..-++.+..+.---.....++|+||||.+++.++.+.|+.+.++|..+
T Consensus 85 v~a~D~~---GhG~SdGl~~yi~~~d~~v~D~~~~~~~i~~~~e~~~lp~FL~GeSMGGAV~Ll~~~k~p~~w~G~ilva 161 (313)
T KOG1455|consen 85 VYAIDYE---GHGRSDGLHAYVPSFDLVVDDVISFFDSIKEREENKGLPRFLFGESMGGAVALLIALKDPNFWDGAILVA 161 (313)
T ss_pred EEEeecc---CCCcCCCCcccCCcHHHHHHHHHHHHHHHhhccccCCCCeeeeecCcchHHHHHHHhhCCcccccceeee
Confidence 9995554 56666443 23456778999998888777643333589999999999999999999999999999999
Q ss_pred CCCC
Q 005240 635 GSYN 638 (706)
Q Consensus 635 ~~~d 638 (706)
|++-
T Consensus 162 Pmc~ 165 (313)
T KOG1455|consen 162 PMCK 165 (313)
T ss_pred cccc
Confidence 9753
|
|
| >PHA02857 monoglyceride lipase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.9e-11 Score=121.81 Aligned_cols=124 Identities=19% Similarity=0.113 Sum_probs=90.5
Q ss_pred ccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCC
Q 005240 489 RKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIG 568 (706)
Q Consensus 489 ~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g 568 (706)
+.||..+++.+|.|.+ . +.|+|+++||.+.. .......+..|++.||.|++.+.+ |
T Consensus 7 ~~~g~~l~~~~~~~~~---~---~~~~v~llHG~~~~---------------~~~~~~~~~~l~~~g~~via~D~~---G 62 (276)
T PHA02857 7 NLDNDYIYCKYWKPIT---Y---PKALVFISHGAGEH---------------SGRYEELAENISSLGILVFSHDHI---G 62 (276)
T ss_pred cCCCCEEEEEeccCCC---C---CCEEEEEeCCCccc---------------cchHHHHHHHHHhCCCEEEEccCC---C
Confidence 3499999999998852 1 35899999995311 111224567788899999996555 4
Q ss_pred CCCCCCc---hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCC
Q 005240 569 EGDKLPN---DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYN 638 (706)
Q Consensus 569 ~g~~~~~---~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d 638 (706)
+|.+... .......++|+..+++++.+.. ...++.++|||+||.+++.++.++|++++++|+.+|..+
T Consensus 63 ~G~S~~~~~~~~~~~~~~~d~~~~l~~~~~~~--~~~~~~lvG~S~GG~ia~~~a~~~p~~i~~lil~~p~~~ 133 (276)
T PHA02857 63 HGRSNGEKMMIDDFGVYVRDVVQHVVTIKSTY--PGVPVFLLGHSMGATISILAAYKNPNLFTAMILMSPLVN 133 (276)
T ss_pred CCCCCCccCCcCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEEcCchHHHHHHHHHhCccccceEEEeccccc
Confidence 5554322 1233456788888888876542 236799999999999999999999999999999998643
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.8e-10 Score=120.32 Aligned_cols=291 Identities=15% Similarity=0.156 Sum_probs=161.7
Q ss_pred cceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCcc
Q 005240 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~ 84 (706)
.+|++.+++. ..|+...+.........+.+.+|||+++|+.+... ....+....|.++.++|+.+.+......
T Consensus 13 ~gI~~~~~d~--~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~----~~~~g~v~~~~i~~~~g~L~~~~~~~~~- 85 (345)
T PF10282_consen 13 GGIYVFRFDE--ETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEG----SGDSGGVSSYRIDPDTGTLTLLNSVPSG- 85 (345)
T ss_dssp TEEEEEEEET--TTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETT----SSTTTEEEEEEEETTTTEEEEEEEEEES-
T ss_pred CcEEEEEEcC--CCCCceEeeeecCCCCCceEEEEeCCCEEEEEEcc----ccCCCCEEEEEECCCcceeEEeeeeccC-
Confidence 4788888855 66877777655566678889999999988554321 0124555667777666777666432211
Q ss_pred ccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc
Q 005240 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (706)
Q Consensus 85 ~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l 164 (706)
....-.+..+|||++|+..-. ..+.+.++++
T Consensus 86 -g~~p~~i~~~~~g~~l~vany------------------------------------------------~~g~v~v~~l 116 (345)
T PF10282_consen 86 -GSSPCHIAVDPDGRFLYVANY------------------------------------------------GGGSVSVFPL 116 (345)
T ss_dssp -SSCEEEEEECTTSSEEEEEET------------------------------------------------TTTEEEEEEE
T ss_pred -CCCcEEEEEecCCCEEEEEEc------------------------------------------------cCCeEEEEEc
Confidence 111345678899998877532 1134544444
Q ss_pred --CCCceec---C------------CCceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCe--eEEcc
Q 005240 165 --DGTAKDF---G------------TPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL--VRELC 225 (706)
Q Consensus 165 --~g~~~~l---t------------~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~l~ 225 (706)
+|.+... . .......+.++|||++|+..... ...|++|+++... +....
T Consensus 117 ~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG------------~D~v~~~~~~~~~~~l~~~~ 184 (345)
T PF10282_consen 117 DDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG------------ADRVYVYDIDDDTGKLTPVD 184 (345)
T ss_dssp CTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT------------TTEEEEEEE-TTS-TEEEEE
T ss_pred cCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC------------CCEEEEEEEeCCCceEEEee
Confidence 3422211 1 11456789999999999766543 2478888887443 33311
Q ss_pred cCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEee---cc----
Q 005240 226 DLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK---LD---- 298 (706)
Q Consensus 226 ~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~---~~---- 298 (706)
..... ...|++.+.|+|||+. +|.+...+ ..|.+++.++ ..+..+.+.. .+
T Consensus 185 ~~~~~---------~G~GPRh~~f~pdg~~-~Yv~~e~s-----------~~v~v~~~~~-~~g~~~~~~~~~~~~~~~~ 242 (345)
T PF10282_consen 185 SIKVP---------PGSGPRHLAFSPDGKY-AYVVNELS-----------NTVSVFDYDP-SDGSLTEIQTISTLPEGFT 242 (345)
T ss_dssp EEECS---------TTSSEEEEEE-TTSSE-EEEEETTT-----------TEEEEEEEET-TTTEEEEEEEEESCETTSC
T ss_pred ccccc---------cCCCCcEEEEcCCcCE-EEEecCCC-----------CcEEEEeecc-cCCceeEEEEeeecccccc
Confidence 11110 0146789999999996 66553222 1244444410 2444433221 11
Q ss_pred --cccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEeeeccCC
Q 005240 299 --LRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKEND 376 (706)
Q Consensus 299 --~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~ 376 (706)
.....+..+|||+.|+.. ++......+|.+|.++ ++.+.+...... ...| ..+.++|||++|++....
T Consensus 243 ~~~~~~~i~ispdg~~lyvs-nr~~~sI~vf~~d~~~--g~l~~~~~~~~~--G~~P--r~~~~s~~g~~l~Va~~~--- 312 (345)
T PF10282_consen 243 GENAPAEIAISPDGRFLYVS-NRGSNSISVFDLDPAT--GTLTLVQTVPTG--GKFP--RHFAFSPDGRYLYVANQD--- 312 (345)
T ss_dssp SSSSEEEEEE-TTSSEEEEE-ECTTTEEEEEEECTTT--TTEEEEEEEEES--SSSE--EEEEE-TTSSEEEEEETT---
T ss_pred ccCCceeEEEecCCCEEEEE-eccCCEEEEEEEecCC--CceEEEEEEeCC--CCCc--cEEEEeCCCCEEEEEecC---
Confidence 134567899999988875 3444455566666555 344443211110 0011 136679999999887532
Q ss_pred cceEEEEecCCCCCCCCCCceeeeecCCCceeee
Q 005240 377 EQIYILLNGRGFTPEGNIPFLDLFDINTGSKERI 410 (706)
Q Consensus 377 ~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l 410 (706)
.+...++.+|.++|..+.+
T Consensus 313 ---------------s~~v~vf~~d~~tG~l~~~ 331 (345)
T PF10282_consen 313 ---------------SNTVSVFDIDPDTGKLTPV 331 (345)
T ss_dssp ---------------TTEEEEEEEETTTTEEEEE
T ss_pred ---------------CCeEEEEEEeCCCCcEEEe
Confidence 2334567788888876554
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >COG4099 Predicted peptidase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=4e-12 Score=119.90 Aligned_cols=188 Identities=19% Similarity=0.207 Sum_probs=116.6
Q ss_pred CCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHH--HCCeEEEEcCCCCcCC
Q 005240 491 DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFL--ARRFAVLAGPSIPIIG 568 (706)
Q Consensus 491 dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~G~~v~~~~~~~~~g 568 (706)
-|.++...+|.|++++++++. +|+||+.||+++.+....-.+..+.. +..++ +.+|.|++|.+..-..
T Consensus 170 tgneLkYrly~Pkdy~pdkky-~PLvlfLHgagq~g~dn~~~l~sg~g---------aiawa~pedqcfVlAPQy~~if~ 239 (387)
T COG4099 170 TGNELKYRLYTPKDYAPDKKY-YPLVLFLHGAGQGGSDNDKVLSSGIG---------AIAWAGPEDQCFVLAPQYNPIFA 239 (387)
T ss_pred cCceeeEEEecccccCCCCcc-ccEEEEEecCCCCCchhhhhhhcCcc---------ceeeecccCceEEEccccccccc
Confidence 578999999999999988752 49999999987654222222211111 11112 2446777755422111
Q ss_pred CCCCCCchhhHHHHHHHHHHHHH-HHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCCCCC------
Q 005240 569 EGDKLPNDRFVEQLVSSAEAAVE-EVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTL------ 641 (706)
Q Consensus 569 ~g~~~~~~~~~~~~~~D~~~~~~-~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d~~~------ 641 (706)
-.++ --.......+.+++ -|.++..||.+||.++|.|+||++++.++.++|+.|+|++.++|-.|...
T Consensus 240 d~e~-----~t~~~l~~~idli~~vlas~ynID~sRIYviGlSrG~~gt~al~~kfPdfFAaa~~iaG~~d~v~lv~~lk 314 (387)
T COG4099 240 DSEE-----KTLLYLIEKIDLILEVLASTYNIDRSRIYVIGLSRGGFGTWALAEKFPDFFAAAVPIAGGGDRVYLVRTLK 314 (387)
T ss_pred cccc-----ccchhHHHHHHHHHHHHhhccCcccceEEEEeecCcchhhHHHHHhCchhhheeeeecCCCchhhhhhhhc
Confidence 1111 11122333445555 55667779999999999999999999999999999999999999887321
Q ss_pred -CCcc-ch-----------HHHHHHHHHhCCCcEEEEEeC---CCCccCCCcccH--HHHHHHHHHHHHH
Q 005240 642 -TPFG-FQ-----------AERFFDALKGHGALSRLVLLP---FEHHVYAARENV--MHVIWETDRWLQK 693 (706)
Q Consensus 642 -~~~~-~~-----------~~~~~~~l~~~~~~~~~~~~~---~~~H~~~~~~~~--~~~~~~~~~f~~~ 693 (706)
.|.+ +. +.-++..|+...+++.+..|. -..|++.....+ ..-..++.+||-+
T Consensus 315 ~~piWvfhs~dDkv~Pv~nSrv~y~~lk~~~~kv~Ytaf~~g~~~~eG~d~~g~w~atyn~~eaieWLl~ 384 (387)
T COG4099 315 KAPIWVFHSSDDKVIPVSNSRVLYERLKALDRKVNYTAFLEGTTVLEGVDHSGVWWATYNDAEAIEWLLK 384 (387)
T ss_pred cCceEEEEecCCCccccCcceeehHHHHhhccccchhhhhhccccccccCCCCcceeecCCHHHHHHHHh
Confidence 2221 11 116677888887777777665 223443322222 2233456777654
|
|
| >TIGR01840 esterase_phb esterase, PHB depolymerase family | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.7e-12 Score=122.02 Aligned_cols=125 Identities=20% Similarity=0.173 Sum_probs=88.2
Q ss_pred EEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCCC--C
Q 005240 497 ATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKL--P 574 (706)
Q Consensus 497 ~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~--~ 574 (706)
+++|.|+++. +++|+||++||++... ..+. ....+...+.+.||+|+.++.++..+.+..+ .
T Consensus 1 ~~ly~P~~~~----~~~P~vv~lHG~~~~~-----------~~~~-~~~~~~~~a~~~g~~Vv~Pd~~g~~~~~~~~~~~ 64 (212)
T TIGR01840 1 MYVYVPAGLT----GPRALVLALHGCGQTA-----------SAYV-IDWGWKAAADRYGFVLVAPEQTSYNSSNNCWDWF 64 (212)
T ss_pred CEEEcCCCCC----CCCCEEEEeCCCCCCH-----------HHHh-hhcChHHHHHhCCeEEEecCCcCccccCCCCCCC
Confidence 4789998752 2479999999986321 0010 0011344445689999998887654322111 1
Q ss_pred ch---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCC
Q 005240 575 ND---RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSY 637 (706)
Q Consensus 575 ~~---~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~ 637 (706)
.. ........|+..+++++.++..+|++||+|+|+|+||++++.++.++|++|+++++++|..
T Consensus 65 ~~~~~~~~~~~~~~~~~~i~~~~~~~~id~~~i~l~G~S~Gg~~a~~~a~~~p~~~~~~~~~~g~~ 130 (212)
T TIGR01840 65 FTHHRARGTGEVESLHQLIDAVKANYSIDPNRVYVTGLSAGGGMTAVLGCTYPDVFAGGASNAGLP 130 (212)
T ss_pred CccccCCCCccHHHHHHHHHHHHHhcCcChhheEEEEECHHHHHHHHHHHhCchhheEEEeecCCc
Confidence 11 0112346778889999988877999999999999999999999999999999999988754
|
This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi. |
| >PRK10749 lysophospholipase L2; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.6e-11 Score=123.06 Aligned_cols=130 Identities=13% Similarity=0.076 Sum_probs=93.4
Q ss_pred ceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEE
Q 005240 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 560 (706)
Q Consensus 481 ~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~ 560 (706)
..+...+...||..+....+.|+. +.|+||++||-.. ........+..|++.||.|+.
T Consensus 29 ~~~~~~~~~~~g~~l~~~~~~~~~-------~~~~vll~HG~~~---------------~~~~y~~~~~~l~~~g~~v~~ 86 (330)
T PRK10749 29 QREEAEFTGVDDIPIRFVRFRAPH-------HDRVVVICPGRIE---------------SYVKYAELAYDLFHLGYDVLI 86 (330)
T ss_pred hccceEEEcCCCCEEEEEEccCCC-------CCcEEEEECCccc---------------hHHHHHHHHHHHHHCCCeEEE
Confidence 456677777799999999887742 1367899999421 111112345567889999999
Q ss_pred cCCCCcCCCCCCCCc--------hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEe
Q 005240 561 GPSIPIIGEGDKLPN--------DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIA 632 (706)
Q Consensus 561 ~~~~~~~g~g~~~~~--------~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~ 632 (706)
.+.+ |+|.+... .......++|+.++++.+.+. .+..++.++||||||.+++.++.++|++++++|+
T Consensus 87 ~D~~---G~G~S~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~~~l~GhSmGG~ia~~~a~~~p~~v~~lvl 161 (330)
T PRK10749 87 IDHR---GQGRSGRLLDDPHRGHVERFNDYVDDLAAFWQQEIQP--GPYRKRYALAHSMGGAILTLFLQRHPGVFDAIAL 161 (330)
T ss_pred EcCC---CCCCCCCCCCCCCcCccccHHHHHHHHHHHHHHHHhc--CCCCCeEEEEEcHHHHHHHHHHHhCCCCcceEEE
Confidence 6665 44544221 123567788888888877654 2447899999999999999999999999999999
Q ss_pred ccCCC
Q 005240 633 RSGSY 637 (706)
Q Consensus 633 ~~~~~ 637 (706)
.+|..
T Consensus 162 ~~p~~ 166 (330)
T PRK10749 162 CAPMF 166 (330)
T ss_pred ECchh
Confidence 98753
|
|
| >PRK11460 putative hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.7e-11 Score=116.88 Aligned_cols=112 Identities=21% Similarity=0.108 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCCCC------CCCcc---------
Q 005240 581 QLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKT------LTPFG--------- 645 (706)
Q Consensus 581 ~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d~~------~~~~~--------- 645 (706)
.....+.+.++++.++..++++||+++|+|+||.+++.++.+.|+.+.++++++|.+... ..|..
T Consensus 82 ~~~~~l~~~i~~~~~~~~~~~~~i~l~GfS~Gg~~al~~a~~~~~~~~~vv~~sg~~~~~~~~~~~~~pvli~hG~~D~v 161 (232)
T PRK11460 82 AIMPTFIETVRYWQQQSGVGASATALIGFSQGAIMALEAVKAEPGLAGRVIAFSGRYASLPETAPTATTIHLIHGGEDPV 161 (232)
T ss_pred HHHHHHHHHHHHHHHhcCCChhhEEEEEECHHHHHHHHHHHhCCCcceEEEEeccccccccccccCCCcEEEEecCCCCc
Confidence 345566677777777766889999999999999999999999999889888888764311 11111
Q ss_pred ---chHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHhcc
Q 005240 646 ---FQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCLS 697 (706)
Q Consensus 646 ---~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~~~~l~~ 697 (706)
...++++++|++.+.++++++||+++|.+.. +..+.+.+||.++|.+
T Consensus 162 vp~~~~~~~~~~L~~~g~~~~~~~~~~~gH~i~~-----~~~~~~~~~l~~~l~~ 211 (232)
T PRK11460 162 IDVAHAVAAQEALISLGGDVTLDIVEDLGHAIDP-----RLMQFALDRLRYTVPK 211 (232)
T ss_pred cCHHHHHHHHHHHHHCCCCeEEEEECCCCCCCCH-----HHHHHHHHHHHHHcch
Confidence 1234899999999999999999999999863 6778888888887743
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.2e-09 Score=113.87 Aligned_cols=265 Identities=14% Similarity=0.096 Sum_probs=141.3
Q ss_pred ccceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcC-CCceeecccCCC
Q 005240 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAE-TGEAKPLFESPD 82 (706)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~-~g~~~~lt~~~~ 82 (706)
..+|++.+++.+ |+.+.+..++.+.......+||||++|+.... ....|.+++.+ .|+...+.....
T Consensus 11 ~~~I~~~~~~~~---g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~---------~~~~i~~~~~~~~g~l~~~~~~~~ 78 (330)
T PRK11028 11 SQQIHVWNLNHE---GALTLLQVVDVPGQVQPMVISPDKRHLYVGVR---------PEFRVLSYRIADDGALTFAAESPL 78 (330)
T ss_pred CCCEEEEEECCC---CceeeeeEEecCCCCccEEECCCCCEEEEEEC---------CCCcEEEEEECCCCceEEeeeecC
Confidence 457899999642 55555555555555778899999999855432 22455555544 454433321111
Q ss_pred ccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEE
Q 005240 83 ICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLG 162 (706)
Q Consensus 83 ~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~ 162 (706)
...+..+.++|||++|+..... .+.|.++
T Consensus 79 ---~~~p~~i~~~~~g~~l~v~~~~------------------------------------------------~~~v~v~ 107 (330)
T PRK11028 79 ---PGSPTHISTDHQGRFLFSASYN------------------------------------------------ANCVSVS 107 (330)
T ss_pred ---CCCceEEEECCCCCEEEEEEcC------------------------------------------------CCeEEEE
Confidence 1124578899999988766321 1455555
Q ss_pred cc--CCCc-eec--CCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCC-CeeEEcccCCCCCCCCc
Q 005240 163 SL--DGTA-KDF--GTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG-KLVRELCDLPPAEDIPV 235 (706)
Q Consensus 163 ~l--~g~~-~~l--t~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~l~~~~~~~~~p~ 235 (706)
++ +|.. +.+ ... .....++++|||++|++.... ...|.+|+++. +.......... ..+
T Consensus 108 ~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~------------~~~v~v~d~~~~g~l~~~~~~~~--~~~- 172 (330)
T PRK11028 108 PLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLK------------EDRIRLFTLSDDGHLVAQEPAEV--TTV- 172 (330)
T ss_pred EECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCC------------CCEEEEEEECCCCcccccCCCce--ecC-
Confidence 55 3421 111 112 345667899999999766544 24799999975 32211100000 000
Q ss_pred ccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeec---cc------cccccee
Q 005240 236 CYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL---DL------RFRSVSW 306 (706)
Q Consensus 236 ~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~---~~------~~~~~~w 306 (706)
...+++.+.|+|||+. ||.. +.. .+.|.++++++ .+++.+.+... +. ....+.+
T Consensus 173 ----~g~~p~~~~~~pdg~~-lyv~-~~~----------~~~v~v~~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~i~~ 235 (330)
T PRK11028 173 ----EGAGPRHMVFHPNQQY-AYCV-NEL----------NSSVDVWQLKD-PHGEIECVQTLDMMPADFSDTRWAADIHI 235 (330)
T ss_pred ----CCCCCceEEECCCCCE-EEEE-ecC----------CCEEEEEEEeC-CCCCEEEEEEEecCCCcCCCCccceeEEE
Confidence 0133567899999996 5544 221 12466666621 23343322111 11 1123678
Q ss_pred cCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEee
Q 005240 307 CDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 307 spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 371 (706)
+|||++++.. +.......+|.++.++ ...+.+-..... ..|. .+.++|||++|+...
T Consensus 236 ~pdg~~lyv~-~~~~~~I~v~~i~~~~--~~~~~~~~~~~~---~~p~--~~~~~~dg~~l~va~ 292 (330)
T PRK11028 236 TPDGRHLYAC-DRTASLISVFSVSEDG--SVLSFEGHQPTE---TQPR--GFNIDHSGKYLIAAG 292 (330)
T ss_pred CCCCCEEEEe-cCCCCeEEEEEEeCCC--CeEEEeEEEecc---ccCC--ceEECCCCCEEEEEE
Confidence 9999988875 3333344455554443 222222110101 1222 367899999998865
|
|
| >PRK10439 enterobactin/ferric enterobactin esterase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.3e-10 Score=122.56 Aligned_cols=175 Identities=17% Similarity=0.126 Sum_probs=114.0
Q ss_pred CceEEEEEEcc-CCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCC---
Q 005240 480 LQKEMIKYQRK-DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARR--- 555 (706)
Q Consensus 480 ~~~~~~~~~~~-dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G--- 555 (706)
...+.+++.+. -|.+...++|+|++++ .+ ++|+|+++||..+. ... ........|.+.|
T Consensus 178 g~~~~~~~~S~~Lg~~r~v~VY~P~~y~-~~--~~PvlyllDG~~w~-------------~~~-~~~~~ld~li~~g~i~ 240 (411)
T PRK10439 178 SPAKEIIWKSERLGNSRRVWIYTTGDAA-PE--ERPLAILLDGQFWA-------------ESM-PVWPALDSLTHRGQLP 240 (411)
T ss_pred CceEEEEEEccccCCceEEEEEECCCCC-CC--CCCEEEEEECHHhh-------------hcC-CHHHHHHHHHHcCCCC
Confidence 34566777764 5778999999999886 22 59999999996431 110 0112344566677
Q ss_pred -eEEEEcCCCCcCCCCCCCC-chhhHHHHHHHHHHHHHHHHHcCC--CCCCcEEEEEechHHHHHHHHHHhCCCceeEEE
Q 005240 556 -FAVLAGPSIPIIGEGDKLP-NDRFVEQLVSSAEAAVEEVVRRGV--ADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGI 631 (706)
Q Consensus 556 -~~v~~~~~~~~~g~g~~~~-~~~~~~~~~~D~~~~~~~l~~~~~--id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v 631 (706)
++|++++..+...+..+.. ...+...+.++++. ++.++.. .|+++.+|+|+||||+.|++++.++|++|.+++
T Consensus 241 P~ivV~id~~~~~~R~~el~~~~~f~~~l~~eLlP---~I~~~y~~~~d~~~~~IaG~S~GGl~AL~~al~~Pd~Fg~v~ 317 (411)
T PRK10439 241 PAVYLLIDAIDTTHRSQELPCNADFWLAVQQELLP---QVRAIAPFSDDADRTVVAGQSFGGLAALYAGLHWPERFGCVL 317 (411)
T ss_pred ceEEEEECCCCcccccccCCchHHHHHHHHHHHHH---HHHHhCCCCCCccceEEEEEChHHHHHHHHHHhCcccccEEE
Confidence 3445544422211222222 22333334444444 4444422 588999999999999999999999999999999
Q ss_pred eccCCCCCCC------------------C--C-c-----c-c------hHHHHHHHHHhCCCcEEEEEeCCCCccCC
Q 005240 632 ARSGSYNKTL------------------T--P-F-----G-F------QAERFFDALKGHGALSRLVLLPFEHHVYA 675 (706)
Q Consensus 632 ~~~~~~d~~~------------------~--~-~-----~-~------~~~~~~~~l~~~~~~~~~~~~~~~~H~~~ 675 (706)
+++|.+-+.. . + . + . ...+|.+.|+++|+++.+.+|+| +|.+.
T Consensus 318 s~Sgs~ww~~~~~~~~~~l~~~l~~~~~~~~~lr~~i~~G~~E~~~~~~~~~l~~~L~~~G~~~~~~~~~G-GHd~~ 393 (411)
T PRK10439 318 SQSGSFWWPHRGGQQEGVLLEQLKAGEVSARGLRIVLEAGRREPMIMRANQALYAQLHPAGHSVFWRQVDG-GHDAL 393 (411)
T ss_pred EeccceecCCccCCchhHHHHHHHhcccCCCCceEEEeCCCCCchHHHHHHHHHHHHHHCCCcEEEEECCC-CcCHH
Confidence 9998752210 0 0 0 0 0 12389999999999999999998 69654
|
|
| >KOG4391 consensus Predicted alpha/beta hydrolase BEM46 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.7e-11 Score=110.35 Aligned_cols=197 Identities=20% Similarity=0.251 Sum_probs=138.4
Q ss_pred CCCCCCCCCCceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHH-H
Q 005240 471 PHPYPTLASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSS-L 549 (706)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 549 (706)
+.+.|..-.++.|.+++++.|.+++++|+++-+. . .|+++|+|+. +++. ..+...+ -
T Consensus 43 ~vptP~~~n~pye~i~l~T~D~vtL~a~~~~~E~----S---~pTlLyfh~N-----------AGNm----Ghr~~i~~~ 100 (300)
T KOG4391|consen 43 NVPTPKEFNMPYERIELRTRDKVTLDAYLMLSES----S---RPTLLYFHAN-----------AGNM----GHRLPIARV 100 (300)
T ss_pred CCCCccccCCCceEEEEEcCcceeEeeeeecccC----C---CceEEEEccC-----------CCcc----cchhhHHHH
Confidence 3445666678899999999999999999998332 2 6999999985 1111 1111122 2
Q ss_pred HHHHCCeEEEEcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeE
Q 005240 550 IFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCC 629 (706)
Q Consensus 550 ~l~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a 629 (706)
.+.+.++.|+...+| |||.+.... .-+...-|..++++||..++..|+.+|.++|.|.||..|+.+++.+.+++.|
T Consensus 101 fy~~l~mnv~ivsYR---GYG~S~Gsp-sE~GL~lDs~avldyl~t~~~~dktkivlfGrSlGGAvai~lask~~~ri~~ 176 (300)
T KOG4391|consen 101 FYVNLKMNVLIVSYR---GYGKSEGSP-SEEGLKLDSEAVLDYLMTRPDLDKTKIVLFGRSLGGAVAIHLASKNSDRISA 176 (300)
T ss_pred HHHHcCceEEEEEee---ccccCCCCc-cccceeccHHHHHHHHhcCccCCcceEEEEecccCCeeEEEeeccchhheee
Confidence 456799999996666 677664432 2344567888999999999999999999999999999999999999889999
Q ss_pred EEeccCCCCCC-C--------------------------------CCccch------------HHHHHHHHHhCCCcEEE
Q 005240 630 GIARSGSYNKT-L--------------------------------TPFGFQ------------AERFFDALKGHGALSRL 664 (706)
Q Consensus 630 ~v~~~~~~d~~-~--------------------------------~~~~~~------------~~~~~~~l~~~~~~~~~ 664 (706)
++.-.-...-. . +|..+- ..+++..+-.. ..++
T Consensus 177 ~ivENTF~SIp~~~i~~v~p~~~k~i~~lc~kn~~~S~~ki~~~~~P~LFiSGlkDelVPP~~Mr~Ly~~c~S~--~Krl 254 (300)
T KOG4391|consen 177 IIVENTFLSIPHMAIPLVFPFPMKYIPLLCYKNKWLSYRKIGQCRMPFLFISGLKDELVPPVMMRQLYELCPSR--TKRL 254 (300)
T ss_pred eeeechhccchhhhhheeccchhhHHHHHHHHhhhcchhhhccccCceEEeecCccccCCcHHHHHHHHhCchh--hhhh
Confidence 98876543210 0 011110 01444444333 3478
Q ss_pred EEeCCCCccCCCcccHHHHHHHHHHHHHHHhcc
Q 005240 665 VLLPFEHHVYAARENVMHVIWETDRWLQKYCLS 697 (706)
Q Consensus 665 ~~~~~~~H~~~~~~~~~~~~~~~~~f~~~~l~~ 697 (706)
..||+..|.-+.- .+-.++.|.+|+.+.-+.
T Consensus 255 ~eFP~gtHNDT~i--~dGYfq~i~dFlaE~~~~ 285 (300)
T KOG4391|consen 255 AEFPDGTHNDTWI--CDGYFQAIEDFLAEVVKS 285 (300)
T ss_pred eeCCCCccCceEE--eccHHHHHHHHHHHhccC
Confidence 9999999976532 234688899999996553
|
|
| >COG1647 Esterase/lipase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=6e-11 Score=108.02 Aligned_cols=154 Identities=17% Similarity=0.162 Sum_probs=108.9
Q ss_pred eEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCCCC--chhhHHHHHHHHHHHHH
Q 005240 514 PCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLP--NDRFVEQLVSSAEAAVE 591 (706)
Q Consensus 514 p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~--~~~~~~~~~~D~~~~~~ 591 (706)
-+||++|| ..+++.. ...+...|...||.|.+|++. |+|..-. -....++...|+.++.+
T Consensus 16 ~AVLllHG-----------FTGt~~D----vr~Lgr~L~e~GyTv~aP~yp---GHG~~~e~fl~t~~~DW~~~v~d~Y~ 77 (243)
T COG1647 16 RAVLLLHG-----------FTGTPRD----VRMLGRYLNENGYTVYAPRYP---GHGTLPEDFLKTTPRDWWEDVEDGYR 77 (243)
T ss_pred EEEEEEec-----------cCCCcHH----HHHHHHHHHHCCceEecCCCC---CCCCCHHHHhcCCHHHHHHHHHHHHH
Confidence 57888998 2332221 234567788899999998886 4443311 11234566888999999
Q ss_pred HHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCCCCC-----CCc----------------------
Q 005240 592 EVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTL-----TPF---------------------- 644 (706)
Q Consensus 592 ~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d~~~-----~~~---------------------- 644 (706)
+|.+.++ +.|+|.|.||||-+|+.++.+.| .+..|.+|+..+... .+.
T Consensus 78 ~L~~~gy---~eI~v~GlSmGGv~alkla~~~p--~K~iv~m~a~~~~k~~~~iie~~l~y~~~~kk~e~k~~e~~~~e~ 152 (243)
T COG1647 78 DLKEAGY---DEIAVVGLSMGGVFALKLAYHYP--PKKIVPMCAPVNVKSWRIIIEGLLEYFRNAKKYEGKDQEQIDKEM 152 (243)
T ss_pred HHHHcCC---CeEEEEeecchhHHHHHHHhhCC--ccceeeecCCcccccchhhhHHHHHHHHHhhhccCCCHHHHHHHH
Confidence 9998877 78999999999999999999997 677777766544211 000
Q ss_pred -cch-------------------------------------------HHHHHHHHHhCCCcEEEEEeCCCCccCCCcccH
Q 005240 645 -GFQ-------------------------------------------AERFFDALKGHGALSRLVLLPFEHHVYAARENV 680 (706)
Q Consensus 645 -~~~-------------------------------------------~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~ 680 (706)
.+. +.-+++.... .+.++.+|++.+|.++....+
T Consensus 153 ~~~~~~~~~~~~~~~~~i~~~~~~~~~I~~pt~vvq~~~D~mv~~~sA~~Iy~~v~s--~~KeL~~~e~SgHVIt~D~Er 230 (243)
T COG1647 153 KSYKDTPMTTTAQLKKLIKDARRSLDKIYSPTLVVQGRQDEMVPAESANFIYDHVES--DDKELKWLEGSGHVITLDKER 230 (243)
T ss_pred HHhhcchHHHHHHHHHHHHHHHhhhhhcccchhheecccCCCCCHHHHHHHHHhccC--CcceeEEEccCCceeecchhH
Confidence 000 0034444433 356999999999999998889
Q ss_pred HHHHHHHHHHHH
Q 005240 681 MHVIWETDRWLQ 692 (706)
Q Consensus 681 ~~~~~~~~~f~~ 692 (706)
.++.+.++.||+
T Consensus 231 d~v~e~V~~FL~ 242 (243)
T COG1647 231 DQVEEDVITFLE 242 (243)
T ss_pred HHHHHHHHHHhh
Confidence 999999999996
|
|
| >TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.7e-10 Score=113.93 Aligned_cols=132 Identities=16% Similarity=0.093 Sum_probs=92.6
Q ss_pred EEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCC
Q 005240 484 MIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPS 563 (706)
Q Consensus 484 ~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~ 563 (706)
.+.+++..| .+.++++.|++ ..+.|+||++||-+. ............+..|+++||.|+..+.
T Consensus 2 ~~~l~~~~g-~~~~~~~~p~~-----~~~~~~VlllHG~g~-----------~~~~~~~~~~~la~~La~~Gy~Vl~~Dl 64 (266)
T TIGR03101 2 PFFLDAPHG-FRFCLYHPPVA-----VGPRGVVIYLPPFAE-----------EMNKSRRMVALQARAFAAGGFGVLQIDL 64 (266)
T ss_pred CEEecCCCC-cEEEEEecCCC-----CCCceEEEEECCCcc-----------cccchhHHHHHHHHHHHHCCCEEEEECC
Confidence 355666555 57788887865 124689999998421 0000100011235678889999999777
Q ss_pred CCcCCCCCCCC--chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCC
Q 005240 564 IPIIGEGDKLP--NDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYN 638 (706)
Q Consensus 564 ~~~~g~g~~~~--~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d 638 (706)
+ |+|.+.. .........+|+..+++++.+++ ..+|.++|+||||.+++.++.++|+.++++|..+|+..
T Consensus 65 ~---G~G~S~g~~~~~~~~~~~~Dv~~ai~~L~~~~---~~~v~LvG~SmGG~vAl~~A~~~p~~v~~lVL~~P~~~ 135 (266)
T TIGR03101 65 Y---GCGDSAGDFAAARWDVWKEDVAAAYRWLIEQG---HPPVTLWGLRLGALLALDAANPLAAKCNRLVLWQPVVS 135 (266)
T ss_pred C---CCCCCCCccccCCHHHHHHHHHHHHHHHHhcC---CCCEEEEEECHHHHHHHHHHHhCccccceEEEeccccc
Confidence 6 4454422 12234566899999999998764 46899999999999999999999999999999998754
|
This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily. |
| >TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.4e-10 Score=114.24 Aligned_cols=132 Identities=14% Similarity=0.040 Sum_probs=91.4
Q ss_pred EEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcC
Q 005240 483 EMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGP 562 (706)
Q Consensus 483 ~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~ 562 (706)
+.+.+.. +|..+.|+++.|.+- . .|.||++|||+.. ..++.. .....+..|+++||.|+.++
T Consensus 3 ~~~~~~~-~~~~l~g~~~~p~~~--~----~~~vv~i~gg~~~--------~~g~~~---~~~~la~~l~~~G~~v~~~D 64 (274)
T TIGR03100 3 RALTFSC-EGETLVGVLHIPGAS--H----TTGVLIVVGGPQY--------RVGSHR---QFVLLARRLAEAGFPVLRFD 64 (274)
T ss_pred eeEEEEc-CCcEEEEEEEcCCCC--C----CCeEEEEeCCccc--------cCCchh---HHHHHHHHHHHCCCEEEEeC
Confidence 4577775 678999999999751 1 2456666776421 111111 11245677889999999966
Q ss_pred CCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCC
Q 005240 563 SIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSY 637 (706)
Q Consensus 563 ~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~ 637 (706)
.+ |+|.+............|+.++++++.++.. .-++|.++|+|+||.+++.++.+. .+++++|+.+|.+
T Consensus 65 l~---G~G~S~~~~~~~~~~~~d~~~~~~~l~~~~~-g~~~i~l~G~S~Gg~~a~~~a~~~-~~v~~lil~~p~~ 134 (274)
T TIGR03100 65 YR---GMGDSEGENLGFEGIDADIAAAIDAFREAAP-HLRRIVAWGLCDAASAALLYAPAD-LRVAGLVLLNPWV 134 (274)
T ss_pred CC---CCCCCCCCCCCHHHHHHHHHHHHHHHHhhCC-CCCcEEEEEECHHHHHHHHHhhhC-CCccEEEEECCcc
Confidence 65 5665533322345678899999999987521 236799999999999999987765 7899999998864
|
This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily. |
| >PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate [] | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.6e-11 Score=121.27 Aligned_cols=136 Identities=21% Similarity=0.239 Sum_probs=86.9
Q ss_pred CCceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHH-HHHHHCCeE
Q 005240 479 SLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSS-LIFLARRFA 557 (706)
Q Consensus 479 ~~~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~G~~ 557 (706)
....+.+.++-. |..|+|++..|+. .+|+|+||++-|- ++ .....+... ..|+.+|++
T Consensus 162 ~~~i~~v~iP~e-g~~I~g~LhlP~~-----~~p~P~VIv~gGl------------Ds---~qeD~~~l~~~~l~~rGiA 220 (411)
T PF06500_consen 162 DYPIEEVEIPFE-GKTIPGYLHLPSG-----EKPYPTVIVCGGL------------DS---LQEDLYRLFRDYLAPRGIA 220 (411)
T ss_dssp SSEEEEEEEEET-TCEEEEEEEESSS-----SS-EEEEEEE--T------------TS----GGGGHHHHHCCCHHCT-E
T ss_pred CCCcEEEEEeeC-CcEEEEEEEcCCC-----CCCCCEEEEeCCc------------ch---hHHHHHHHHHHHHHhCCCE
Confidence 346788888864 5899999999984 3479988876441 11 211112222 346789999
Q ss_pred EEEcCCCCcCCCCCCCCc-hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCC
Q 005240 558 VLAGPSIPIIGEGDKLPN-DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 636 (706)
Q Consensus 558 v~~~~~~~~~g~g~~~~~-~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~ 636 (706)
++..+. ++.|+...+.- .+. ... ..++++||...+.||.+||+++|.|+||+.|..++...+++++|+|+..|+
T Consensus 221 ~LtvDm-PG~G~s~~~~l~~D~-~~l---~~aVLd~L~~~p~VD~~RV~~~G~SfGGy~AvRlA~le~~RlkavV~~Ga~ 295 (411)
T PF06500_consen 221 MLTVDM-PGQGESPKWPLTQDS-SRL---HQAVLDYLASRPWVDHTRVGAWGFSFGGYYAVRLAALEDPRLKAVVALGAP 295 (411)
T ss_dssp EEEE---TTSGGGTTT-S-S-C-CHH---HHHHHHHHHHSTTEEEEEEEEEEETHHHHHHHHHHHHTTTT-SEEEEES--
T ss_pred EEEEcc-CCCcccccCCCCcCH-HHH---HHHHHHHHhcCCccChhheEEEEeccchHHHHHHHHhcccceeeEeeeCch
Confidence 987443 33343222221 111 111 236799999999999999999999999999999998777899999999987
Q ss_pred CCCC
Q 005240 637 YNKT 640 (706)
Q Consensus 637 ~d~~ 640 (706)
....
T Consensus 296 vh~~ 299 (411)
T PF06500_consen 296 VHHF 299 (411)
T ss_dssp -SCG
T ss_pred Hhhh
Confidence 5543
|
This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C. |
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.27 E-value=4e-09 Score=106.53 Aligned_cols=264 Identities=15% Similarity=0.122 Sum_probs=156.0
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceee-cccCCCccccccccceEEecCCcEEEEEecCCCC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKP-LFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~-lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~ 110 (706)
.+..+.|+|||+.|++... ...+.+++..+++... +..... .+..+.|+|+++.|++...
T Consensus 11 ~i~~~~~~~~~~~l~~~~~----------~g~i~i~~~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~l~~~~~---- 71 (289)
T cd00200 11 GVTCVAFSPDGKLLATGSG----------DGTIKVWDLETGELLRTLKGHTG-----PVRDVAASADGTYLASGSS---- 71 (289)
T ss_pred CEEEEEEcCCCCEEEEeec----------CcEEEEEEeeCCCcEEEEecCCc-----ceeEEEECCCCCEEEEEcC----
Confidence 5888999999999988642 3567777777664333 322222 1457899999988777632
Q ss_pred CCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCC--CceecCCC-ceEeeeeeCCCCc
Q 005240 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG--TAKDFGTP-AVYTAVEPSPDQK 187 (706)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g--~~~~lt~~-~~~~~~~~SpDG~ 187 (706)
.+.|+++++.. ....+... ..+..+.|+|+++
T Consensus 72 ---------------------------------------------~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 106 (289)
T cd00200 72 ---------------------------------------------DKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGR 106 (289)
T ss_pred ---------------------------------------------CCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCC
Confidence 15777888843 44444444 4788999999977
Q ss_pred EEEEEeeccCcccccccccccceEEEEecCCCeeE-EcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCC
Q 005240 188 YVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR-ELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRG 266 (706)
Q Consensus 188 ~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~ 266 (706)
.|+..... ..+.+|++...+.. .+.... .....+.|+|+++. |+ ...
T Consensus 107 ~~~~~~~~-------------~~i~~~~~~~~~~~~~~~~~~-------------~~i~~~~~~~~~~~-l~-~~~---- 154 (289)
T cd00200 107 ILSSSSRD-------------KTIKVWDVETGKCLTTLRGHT-------------DWVNSVAFSPDGTF-VA-SSS---- 154 (289)
T ss_pred EEEEecCC-------------CeEEEEECCCcEEEEEeccCC-------------CcEEEEEEcCcCCE-EE-EEc----
Confidence 66544422 37999999844433 332111 12447899999663 33 321
Q ss_pred CCccccCccceeeeecCCCCCCCCc-eEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCc
Q 005240 267 DANVEVSPRDIIYTQPAEPAEGEKP-EILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRV 345 (706)
Q Consensus 267 ~~~~~~~~~~~l~~~d~~~~~~~~~-~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~ 345 (706)
..+.++++|+ ..++. ..+......+..+.|+|+++.|++... ...|.++|+.++ +....+...
T Consensus 155 -------~~~~i~i~d~---~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----~~~i~i~d~~~~--~~~~~~~~~ 218 (289)
T cd00200 155 -------QDGTIKLWDL---RTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS----DGTIKLWDLSTG--KCLGTLRGH 218 (289)
T ss_pred -------CCCcEEEEEc---cccccceeEecCccccceEEECCCcCEEEEecC----CCcEEEEECCCC--ceecchhhc
Confidence 1124778887 43443 334444557889999999988887653 234677777653 222222111
Q ss_pred ccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeeecccchhhhhhhhhh
Q 005240 346 FENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVAL 425 (706)
Q Consensus 346 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~ 425 (706)
.. ....+.|++++..++.... ...+..+++.+++.........
T Consensus 219 ~~------~i~~~~~~~~~~~~~~~~~---------------------~~~i~i~~~~~~~~~~~~~~~~---------- 261 (289)
T cd00200 219 EN------GVNSVAFSPDGYLLASGSE---------------------DGTIRVWDLRTGECVQTLSGHT---------- 261 (289)
T ss_pred CC------ceEEEEEcCCCcEEEEEcC---------------------CCcEEEEEcCCceeEEEccccC----------
Confidence 00 1223667888666554421 1135566766555433332211
Q ss_pred ccCCCceecccCCCEEEEEE
Q 005240 426 VFGQGEEDINLNQLKILTSK 445 (706)
Q Consensus 426 ~~~~~~~~~s~Dg~~l~~~~ 445 (706)
.....+.|+++++.++...
T Consensus 262 -~~i~~~~~~~~~~~l~~~~ 280 (289)
T cd00200 262 -NSVTSLAWSPDGKRLASGS 280 (289)
T ss_pred -CcEEEEEECCCCCEEEEec
Confidence 1123468999987766543
|
|
| >PF10503 Esterase_phd: Esterase PHB depolymerase | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.1e-11 Score=115.85 Aligned_cols=126 Identities=25% Similarity=0.254 Sum_probs=85.8
Q ss_pred EEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHH-CCeEEEEcCCCCcC--CCCCC
Q 005240 496 TATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA-RRFAVLAGPSIPII--GEGDK 572 (706)
Q Consensus 496 ~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~G~~v~~~~~~~~~--g~g~~ 572 (706)
...||.|+.... ++.|+||++||+.... ..+.. ......+++ .||+|+.|...... .....
T Consensus 2 ~Y~lYvP~~~~~---~~~PLVv~LHG~~~~a-----------~~~~~--~s~~~~lAd~~GfivvyP~~~~~~~~~~cw~ 65 (220)
T PF10503_consen 2 SYRLYVPPGAPR---GPVPLVVVLHGCGQSA-----------EDFAA--GSGWNALADREGFIVVYPEQSRRANPQGCWN 65 (220)
T ss_pred cEEEecCCCCCC---CCCCEEEEeCCCCCCH-----------HHHHh--hcCHHHHhhcCCeEEEcccccccCCCCCccc
Confidence 467999997532 3589999999985321 11110 011234564 89999986543211 11111
Q ss_pred CCc--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCC
Q 005240 573 LPN--DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSY 637 (706)
Q Consensus 573 ~~~--~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~ 637 (706)
+.. ..........+...++++.++..||++||.++|+|.||+|+..+++.+|++|+|+..++|..
T Consensus 66 w~~~~~~~g~~d~~~i~~lv~~v~~~~~iD~~RVyv~G~S~Gg~ma~~la~~~pd~faa~a~~sG~~ 132 (220)
T PF10503_consen 66 WFSDDQQRGGGDVAFIAALVDYVAARYNIDPSRVYVTGLSNGGMMANVLACAYPDLFAAVAVVSGVP 132 (220)
T ss_pred ccccccccCccchhhHHHHHHhHhhhcccCCCceeeEEECHHHHHHHHHHHhCCccceEEEeecccc
Confidence 111 11112335567788899988888999999999999999999999999999999999998863
|
|
| >TIGR00976 /NonD putative hydrolase, CocE/NonD family | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.7e-11 Score=134.50 Aligned_cols=131 Identities=20% Similarity=0.307 Sum_probs=97.2
Q ss_pred EccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcC
Q 005240 488 QRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPII 567 (706)
Q Consensus 488 ~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~ 567 (706)
+..||.+|.+.+++|.+ .+++|+||++||-.... .. ........++.|+++||+|+..+.+|
T Consensus 2 ~~~DG~~L~~~~~~P~~-----~~~~P~Il~~~gyg~~~----~~-------~~~~~~~~~~~l~~~Gy~vv~~D~RG-- 63 (550)
T TIGR00976 2 PMRDGTRLAIDVYRPAG-----GGPVPVILSRTPYGKDA----GL-------RWGLDKTEPAWFVAQGYAVVIQDTRG-- 63 (550)
T ss_pred cCCCCCEEEEEEEecCC-----CCCCCEEEEecCCCCch----hh-------ccccccccHHHHHhCCcEEEEEeccc--
Confidence 45699999999999975 22589999999742110 00 00011224567899999999977764
Q ss_pred CCCCCCCchhhH-HHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCC
Q 005240 568 GEGDKLPNDRFV-EQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYN 638 (706)
Q Consensus 568 g~g~~~~~~~~~-~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d 638 (706)
+|.+....... ....+|+.++++|+.++++.+ .||+++|+||||++++.++.+.|+.++|++..++..+
T Consensus 64 -~g~S~g~~~~~~~~~~~D~~~~i~~l~~q~~~~-~~v~~~G~S~GG~~a~~~a~~~~~~l~aiv~~~~~~d 133 (550)
T TIGR00976 64 -RGASEGEFDLLGSDEAADGYDLVDWIAKQPWCD-GNVGMLGVSYLAVTQLLAAVLQPPALRAIAPQEGVWD 133 (550)
T ss_pred -cccCCCceEecCcccchHHHHHHHHHHhCCCCC-CcEEEEEeChHHHHHHHHhccCCCceeEEeecCcccc
Confidence 44443322222 567899999999999998776 6999999999999999999999999999999887754
|
This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases. |
| >KOG3101 consensus Esterase D [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.4e-11 Score=110.37 Aligned_cols=139 Identities=19% Similarity=0.293 Sum_probs=89.2
Q ss_pred CeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHH-HCCeEEEEcCCCCc----
Q 005240 492 GVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFL-ARRFAVLAGPSIPI---- 566 (706)
Q Consensus 492 g~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~G~~v~~~~~~~~---- 566 (706)
+..+.--+|+|+.+..+| +.|+|+|+.|= +.....|. .....|..| ..|++|+.|+..+.
T Consensus 25 ~c~Mtf~vylPp~a~~~k--~~P~lf~LSGL-----------TCT~~Nfi--~Ksg~qq~As~hgl~vV~PDTSPRG~~v 89 (283)
T KOG3101|consen 25 KCSMTFGVYLPPDAPRGK--RCPVLFYLSGL-----------TCTHENFI--EKSGFQQQASKHGLAVVAPDTSPRGVEV 89 (283)
T ss_pred ccceEEEEecCCCcccCC--cCceEEEecCC-----------cccchhhH--hhhhHHHhHhhcCeEEECCCCCCCcccc
Confidence 456777899999876555 58999999872 22222221 123445555 48999998655432
Q ss_pred CCC--------CCCCCc----hhhHH--HHHHHHHHHHHHHHHc--CCCCCCcEEEEEechHHHHHHHHHHhCCCceeEE
Q 005240 567 IGE--------GDKLPN----DRFVE--QLVSSAEAAVEEVVRR--GVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCG 630 (706)
Q Consensus 567 ~g~--------g~~~~~----~~~~~--~~~~D~~~~~~~l~~~--~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~ 630 (706)
.|. |-.|.- +.|.+ .+++-+..-+-.++.. -.+|+.+++|+||||||+.|+....++|.+++.+
T Consensus 90 ~g~~eswDFG~GAGFYvnAt~epw~~~yrMYdYv~kELp~~l~~~~~pld~~k~~IfGHSMGGhGAl~~~Lkn~~kykSv 169 (283)
T KOG3101|consen 90 AGDDESWDFGQGAGFYVNATQEPWAKHYRMYDYVVKELPQLLNSANVPLDPLKVGIFGHSMGGHGALTIYLKNPSKYKSV 169 (283)
T ss_pred CCCcccccccCCceeEEecccchHhhhhhHHHHHHHHHHHHhccccccccchhcceeccccCCCceEEEEEcCcccccce
Confidence 121 111111 12222 1222222212122221 2389999999999999999999999999999999
Q ss_pred EeccCCCCCCCCCcc
Q 005240 631 IARSGSYNKTLTPFG 645 (706)
Q Consensus 631 v~~~~~~d~~~~~~~ 645 (706)
.+++|++|...+||+
T Consensus 170 SAFAPI~NP~~cpWG 184 (283)
T KOG3101|consen 170 SAFAPICNPINCPWG 184 (283)
T ss_pred eccccccCcccCcch
Confidence 999999998877764
|
|
| >PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.1e-11 Score=120.37 Aligned_cols=140 Identities=19% Similarity=0.117 Sum_probs=98.7
Q ss_pred EEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHH-CCeEEEEcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHH
Q 005240 516 LFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA-RRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVV 594 (706)
Q Consensus 516 vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~ 594 (706)
|||+|||++..+.. .........+++ .|++|+.++|+-... .-....++|+.++++|+.
T Consensus 1 v~~~HGGg~~~g~~------------~~~~~~~~~la~~~g~~v~~~~Yrl~p~--------~~~p~~~~D~~~a~~~l~ 60 (211)
T PF07859_consen 1 VVYIHGGGWVMGSK------------ESHWPFAARLAAERGFVVVSIDYRLAPE--------APFPAALEDVKAAYRWLL 60 (211)
T ss_dssp EEEE--STTTSCGT------------TTHHHHHHHHHHHHTSEEEEEE---TTT--------SSTTHHHHHHHHHHHHHH
T ss_pred CEEECCcccccCCh------------HHHHHHHHHHHhhccEEEEEeecccccc--------ccccccccccccceeeec
Confidence 78999997643111 112345566775 999999988874311 123567899999999999
Q ss_pred Hc---CCCCCCcEEEEEechHHHHHHHHHHhCCC----ceeEEEeccCCCCC-CCC-------------Ccc--------
Q 005240 595 RR---GVADPSRIAVGGHSYGAFMTAHLLAHAPH----LFCCGIARSGSYNK-TLT-------------PFG-------- 645 (706)
Q Consensus 595 ~~---~~id~~~i~i~G~S~GG~~a~~~~~~~p~----~~~a~v~~~~~~d~-~~~-------------~~~-------- 645 (706)
++ ..+|++||+|+|+|.||+|++.++.+..+ .++++++.+|..|. ... +..
T Consensus 61 ~~~~~~~~d~~~i~l~G~SAGg~la~~~~~~~~~~~~~~~~~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (211)
T PF07859_consen 61 KNADKLGIDPERIVLIGDSAGGHLALSLALRARDRGLPKPKGIILISPWTDLQDFDGPSYDDSNENKDDPFLPAPKIDWF 140 (211)
T ss_dssp HTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTTTCHESEEEEESCHSSTSTSSCHHHHHHHHHSTTSSSBHHHHHHH
T ss_pred cccccccccccceEEeecccccchhhhhhhhhhhhcccchhhhhcccccccchhcccccccccccccccccccccccccc
Confidence 87 23789999999999999999999965433 48999999998765 210 000
Q ss_pred ----------------------c------------------hHHHHHHHHHhCCCcEEEEEeCCCCccCC
Q 005240 646 ----------------------F------------------QAERFFDALKGHGALSRLVLLPFEHHVYA 675 (706)
Q Consensus 646 ----------------------~------------------~~~~~~~~l~~~~~~~~~~~~~~~~H~~~ 675 (706)
. +..+|+++|++.|+++++++++|..|.|.
T Consensus 141 ~~~~~~~~~~~~~~~sp~~~~~~~~~Pp~~i~~g~~D~l~~~~~~~~~~L~~~gv~v~~~~~~g~~H~f~ 210 (211)
T PF07859_consen 141 WKLYLPGSDRDDPLASPLNASDLKGLPPTLIIHGEDDVLVDDSLRFAEKLKKAGVDVELHVYPGMPHGFF 210 (211)
T ss_dssp HHHHHSTGGTTSTTTSGGGSSCCTTCHEEEEEEETTSTTHHHHHHHHHHHHHTT-EEEEEEETTEETTGG
T ss_pred cccccccccccccccccccccccccCCCeeeeccccccchHHHHHHHHHHHHCCCCEEEEEECCCeEEee
Confidence 0 11299999999999999999999999873
|
; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A .... |
| >PLN00021 chlorophyllase | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.2e-10 Score=115.24 Aligned_cols=176 Identities=18% Similarity=0.142 Sum_probs=116.6
Q ss_pred eEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCC
Q 005240 493 VPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDK 572 (706)
Q Consensus 493 ~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~ 572 (706)
..+++.+++|.. .+++|+||++||.... .......+..|+++||+|++++..+..+. .
T Consensus 37 ~~~p~~v~~P~~-----~g~~PvVv~lHG~~~~---------------~~~y~~l~~~Las~G~~VvapD~~g~~~~--~ 94 (313)
T PLN00021 37 PPKPLLVATPSE-----AGTYPVLLFLHGYLLY---------------NSFYSQLLQHIASHGFIVVAPQLYTLAGP--D 94 (313)
T ss_pred CCceEEEEeCCC-----CCCCCEEEEECCCCCC---------------cccHHHHHHHHHhCCCEEEEecCCCcCCC--C
Confidence 478999999975 2358999999996421 11112455678899999999776543221 1
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHc--------CCCCCCcEEEEEechHHHHHHHHHHhCCC-----ceeEEEeccCCCCC
Q 005240 573 LPNDRFVEQLVSSAEAAVEEVVRR--------GVADPSRIAVGGHSYGAFMTAHLLAHAPH-----LFCCGIARSGSYNK 639 (706)
Q Consensus 573 ~~~~~~~~~~~~D~~~~~~~l~~~--------~~id~~~i~i~G~S~GG~~a~~~~~~~p~-----~~~a~v~~~~~~d~ 639 (706)
. ...+.|..++++|+.+. ..+|.+|++++|||+||++++.++.+.++ +|+++++..|+...
T Consensus 95 -~-----~~~i~d~~~~~~~l~~~l~~~l~~~~~~d~~~v~l~GHS~GG~iA~~lA~~~~~~~~~~~v~ali~ldPv~g~ 168 (313)
T PLN00021 95 -G-----TDEIKDAAAVINWLSSGLAAVLPEGVRPDLSKLALAGHSRGGKTAFALALGKAAVSLPLKFSALIGLDPVDGT 168 (313)
T ss_pred -c-----hhhHHHHHHHHHHHHhhhhhhcccccccChhheEEEEECcchHHHHHHHhhccccccccceeeEEeecccccc
Confidence 1 12345566667777652 23678999999999999999999998864 68899988875422
Q ss_pred CC-------------------CC----------------------ccchHHHHHHHHHhCCCcEEEEEeCCCCccCC-Cc
Q 005240 640 TL-------------------TP----------------------FGFQAERFFDALKGHGALSRLVLLPFEHHVYA-AR 677 (706)
Q Consensus 640 ~~-------------------~~----------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~-~~ 677 (706)
.. .| ......+|+++++. +..+++.++.+|.-. ..
T Consensus 169 ~~~~~~~p~il~~~~~s~~~~~P~liig~g~~~~~~~~~~p~~ap~~~~~~~f~~~~~~---~~~~~~~~~~gH~~~~~~ 245 (313)
T PLN00021 169 SKGKQTPPPVLTYAPHSFNLDIPVLVIGTGLGGEPRNPLFPPCAPDGVNHAEFFNECKA---PAVHFVAKDYGHMDMLDD 245 (313)
T ss_pred ccccCCCCcccccCcccccCCCCeEEEecCCCcccccccccccCCCCCCHHHHHHhcCC---CeeeeeecCCCcceeecC
Confidence 10 01 01112367777654 678889999999532 10
Q ss_pred ---------------------ccHHHHHHHHHHHHHHHhccCC
Q 005240 678 ---------------------ENVMHVIWETDRWLQKYCLSNT 699 (706)
Q Consensus 678 ---------------------~~~~~~~~~~~~f~~~~l~~~~ 699 (706)
..+......++.||+.+|..+.
T Consensus 246 ~~~~~~~~~~~~~c~~g~~~~~~r~~~~g~~~aFl~~~l~~~~ 288 (313)
T PLN00021 246 DTSGIRGKITGCMCKNGKPRKPMRRFVGGAVVAFLKAYLEGDT 288 (313)
T ss_pred CCccccccccccccCCCCchHHHHHHHHHHHHHHHHHHhcCch
Confidence 1134555678999999886543
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.25 E-value=8.7e-09 Score=104.39 Aligned_cols=280 Identities=14% Similarity=0.126 Sum_probs=138.7
Q ss_pred cceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCcc
Q 005240 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~ 84 (706)
.+|.+++|+.. ..+.+-+.+ ...+.-+++||.|-+||-. +...+|.+++....+. +...+...
T Consensus 39 ksv~ir~i~~~---~~~~iYtEH--~~~vtVAkySPsG~yiASG----------D~sG~vRIWdtt~~~h--iLKnef~v 101 (603)
T KOG0318|consen 39 KSVIIRNIDNP---ASVDIYTEH--AHQVTVAKYSPSGFYIASG----------DVSGKVRIWDTTQKEH--ILKNEFQV 101 (603)
T ss_pred CEEEEEECCCc---cceeeeccc--cceeEEEEeCCCceEEeec----------CCcCcEEEEeccCcce--eeeeeeee
Confidence 46778888662 233333422 2246778999999988764 4456677777544321 21112223
Q ss_pred ccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCcee-ecCCCcccccccchhccCCchhhhhhhhcccceEEEE-
Q 005240 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQ-SNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLG- 162 (706)
Q Consensus 85 ~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~- 162 (706)
+.+.+.+++|++||++|+..... +..+.-...-..|..+. ...+.+.+..+.++ ..+-|++
T Consensus 102 ~aG~I~Di~Wd~ds~RI~avGEG-rerfg~~F~~DSG~SvGei~GhSr~ins~~~K----------------psRPfRi~ 164 (603)
T KOG0318|consen 102 LAGPIKDISWDFDSKRIAAVGEG-RERFGHVFLWDSGNSVGEITGHSRRINSVDFK----------------PSRPFRIA 164 (603)
T ss_pred cccccccceeCCCCcEEEEEecC-ccceeEEEEecCCCccceeeccceeEeeeecc----------------CCCceEEE
Confidence 34448899999999998876421 21110000000000000 00011111111110 0111111
Q ss_pred --------cc-CCCceec--CC--C-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCC-eeEEcccC
Q 005240 163 --------SL-DGTAKDF--GT--P-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK-LVRELCDL 227 (706)
Q Consensus 163 --------~l-~g~~~~l--t~--~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~ 227 (706)
.+ .|.|-+. +. . ..+.++++||||++++-...+ ..+++||-.++ ++..|.+.
T Consensus 165 T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsD-------------gki~iyDGktge~vg~l~~~ 231 (603)
T KOG0318|consen 165 TGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSD-------------GKIYIYDGKTGEKVGELEDS 231 (603)
T ss_pred eccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCC-------------ccEEEEcCCCccEEEEecCC
Confidence 11 2211111 11 1 356789999999998766554 37999998744 45555543
Q ss_pred CCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceE-Eeec---cccccc
Q 005240 228 PPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEI-LHKL---DLRFRS 303 (706)
Q Consensus 228 ~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~-l~~~---~~~~~~ 303 (706)
.... .++..++||||+++ ++-++ ++. .+.+||+ .+.+..+ +.-. ..+.-.
T Consensus 232 ~aHk----------GsIfalsWsPDs~~-~~T~S----aDk--------t~KIWdV---s~~slv~t~~~~~~v~dqqvG 285 (603)
T KOG0318|consen 232 DAHK----------GSIFALSWSPDSTQ-FLTVS----ADK--------TIKIWDV---STNSLVSTWPMGSTVEDQQVG 285 (603)
T ss_pred CCcc----------ccEEEEEECCCCce-EEEec----CCc--------eEEEEEe---eccceEEEeecCCchhceEEE
Confidence 3221 34668999999998 65443 222 3567777 4444333 3211 122334
Q ss_pred ceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEee
Q 005240 304 VSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 304 ~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 371 (706)
..|..| .|+..+ .. ..|-.++++..+ +..+..+.... ...++.++||++|+...
T Consensus 286 ~lWqkd--~lItVS-l~---G~in~ln~~d~~--~~~~i~GHnK~------ITaLtv~~d~~~i~Sgs 339 (603)
T KOG0318|consen 286 CLWQKD--HLITVS-LS---GTINYLNPSDPS--VLKVISGHNKS------ITALTVSPDGKTIYSGS 339 (603)
T ss_pred EEEeCC--eEEEEE-cC---cEEEEecccCCC--hhheecccccc------eeEEEEcCCCCEEEeec
Confidence 457633 344333 11 235566666642 33332222221 22366789998887654
|
|
| >PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.7e-10 Score=126.52 Aligned_cols=150 Identities=20% Similarity=0.186 Sum_probs=111.3
Q ss_pred hHHHHHHHCCeEEEEcCCCCcCCCCCCCCc-hhhHHHHHHHHHHHHHHHHHc--CCCC------------CCcEEEEEec
Q 005240 546 TSSLIFLARRFAVLAGPSIPIIGEGDKLPN-DRFVEQLVSSAEAAVEEVVRR--GVAD------------PSRIAVGGHS 610 (706)
Q Consensus 546 ~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~-~~~~~~~~~D~~~~~~~l~~~--~~id------------~~~i~i~G~S 610 (706)
...+.|+++||+|+..+.+|.. .+... ..+.....+|..++|+||..+ .+.| ..|||++|.|
T Consensus 270 ~~~~~~~~rGYaVV~~D~RGtg---~SeG~~~~~~~~E~~D~~~vIeWl~~~~~~~~d~~~~~~~kq~WsnGkVGm~G~S 346 (767)
T PRK05371 270 SLNDYFLPRGFAVVYVSGIGTR---GSDGCPTTGDYQEIESMKAVIDWLNGRATAYTDRTRGKEVKADWSNGKVAMTGKS 346 (767)
T ss_pred hHHHHHHhCCeEEEEEcCCCCC---CCCCcCccCCHHHHHHHHHHHHHHhhCCccccccccccccccCCCCCeeEEEEEc
Confidence 4567899999999996666443 33222 223366789999999999964 2334 5799999999
Q ss_pred hHHHHHHHHHHhCCCceeEEEeccCCCCCCC---------CCc-------------------------------------
Q 005240 611 YGAFMTAHLLAHAPHLFCCGIARSGSYNKTL---------TPF------------------------------------- 644 (706)
Q Consensus 611 ~GG~~a~~~~~~~p~~~~a~v~~~~~~d~~~---------~~~------------------------------------- 644 (706)
|||++++.+|+..|..++|+|+.+++.++.. .|.
T Consensus 347 Y~G~~~~~aAa~~pp~LkAIVp~a~is~~yd~yr~~G~~~~~~g~~ged~d~l~~~~~~r~~~~~~~~~~~~~~~~~~~~ 426 (767)
T PRK05371 347 YLGTLPNAVATTGVEGLETIIPEAAISSWYDYYRENGLVRAPGGYQGEDLDVLAELTYSRNLLAGDYLRHNEACEKLLAE 426 (767)
T ss_pred HHHHHHHHHHhhCCCcceEEEeeCCCCcHHHHhhcCCceeccCCcCCcchhhHHHHhhhcccCcchhhcchHHHHHHHhh
Confidence 9999999999999999999999988754310 000
Q ss_pred ----------cc----------------------------------hHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccH
Q 005240 645 ----------GF----------------------------------QAERFFDALKGHGALSRLVLLPFEHHVYAARENV 680 (706)
Q Consensus 645 ----------~~----------------------------------~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~ 680 (706)
.+ +..+++++|++.+++.++++.++ +|........
T Consensus 427 ~~~~~~~~~~~y~~fW~~rn~~~~~~kIkvPvLlIhGw~D~~V~~~~s~~ly~aL~~~g~pkkL~l~~g-~H~~~~~~~~ 505 (767)
T PRK05371 427 LTAAQDRKTGDYNDFWDDRNYLKDADKIKASVLVVHGLNDWNVKPKQVYQWWDALPENGVPKKLFLHQG-GHVYPNNWQS 505 (767)
T ss_pred hhhhhhhcCCCccHHHHhCCHhhHhhCCCCCEEEEeeCCCCCCChHHHHHHHHHHHhcCCCeEEEEeCC-CccCCCchhH
Confidence 00 01188999999999999988876 6866544456
Q ss_pred HHHHHHHHHHHHHHhccCC
Q 005240 681 MHVIWETDRWLQKYCLSNT 699 (706)
Q Consensus 681 ~~~~~~~~~f~~~~l~~~~ 699 (706)
.++.+.+.+||++||+...
T Consensus 506 ~d~~e~~~~Wfd~~LkG~~ 524 (767)
T PRK05371 506 IDFRDTMNAWFTHKLLGID 524 (767)
T ss_pred HHHHHHHHHHHHhccccCC
Confidence 7888999999999997543
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=99.22 E-value=7e-09 Score=111.76 Aligned_cols=319 Identities=13% Similarity=0.081 Sum_probs=174.0
Q ss_pred CCCCeEEEEeeccccccccCCceeEEEEEcC--CCce-eecccCCCcccc---ccccceEEecCCcEEEEEecCCCCCCC
Q 005240 40 PDGKRIAFSVRVDEEDNVSSCKLRVWIADAE--TGEA-KPLFESPDICLN---AVFGSFVWVNNSTLLIFTIPSSRRDPP 113 (706)
Q Consensus 40 PDG~~laf~~~~~~~~~~~~~~~~l~~~d~~--~g~~-~~lt~~~~~~~~---~~~~~~~wSpDg~~l~~~~~~~~~~~~ 113 (706)
..|.+.+|....+ .....-+|+.... .++. +.|.....-.-. .....+.+||||++|+|.....+.+
T Consensus 76 ~~g~~~y~~~~~~-----~~~~~~~~r~~~~~~~~~~~evllD~n~l~~~~~~~~~~~~~~Spdg~~la~~~s~~G~e-- 148 (414)
T PF02897_consen 76 RRGGYYYYSRNQG-----GKNYPVLYRRKTDEEDGPEEEVLLDPNELAKDGGYVSLGGFSVSPDGKRLAYSLSDGGSE-- 148 (414)
T ss_dssp EETTEEEEEEE-S-----S-SS-EEEEEETTS-TS-C-EEEEEGGGGSTTSS-EEEEEEEETTTSSEEEEEEEETTSS--
T ss_pred EECCeEEEEEEcC-----CCceEEEEEEecccCCCCceEEEEcchHhhccCceEEeeeeeECCCCCEEEEEecCCCCc--
Confidence 4677887776521 1233456666655 3443 334322111000 1123577899999999986543332
Q ss_pred CCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCCceecC-CCceEeeeeeCCCCcEEEE
Q 005240 114 KKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFG-TPAVYTAVEPSPDQKYVLI 191 (706)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~~~lt-~~~~~~~~~~SpDG~~i~~ 191 (706)
...|+++|+ +|+...-. .......+.|++||+.++|
T Consensus 149 ------------------------------------------~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y 186 (414)
T PF02897_consen 149 ------------------------------------------WYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFY 186 (414)
T ss_dssp ------------------------------------------EEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEE
T ss_pred ------------------------------------------eEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEE
Confidence 268999999 66322111 1112224999999999999
Q ss_pred EeeccCcccccccccccceEEEEecCCCeeE--EcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCc
Q 005240 192 TSMHRPYSYKVPCARFSQKVQVWTTDGKLVR--ELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDAN 269 (706)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~ 269 (706)
+......... ......+|+++.+.+.... .+....... .+ ...+..|+|++. |+....... .
T Consensus 187 ~~~~~~~~~~--~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~---~~-------~~~~~~s~d~~~-l~i~~~~~~-~-- 250 (414)
T PF02897_consen 187 TRFDEDQRTS--DSGYPRQVYRHKLGTPQSEDELVFEEPDEP---FW-------FVSVSRSKDGRY-LFISSSSGT-S-- 250 (414)
T ss_dssp EECSTTTSS---CCGCCEEEEEEETTS-GGG-EEEEC-TTCT---TS-------EEEEEE-TTSSE-EEEEEESSS-S--
T ss_pred EEeCcccccc--cCCCCcEEEEEECCCChHhCeeEEeecCCC---cE-------EEEEEecCcccE-EEEEEEccc-c--
Confidence 9876532100 1123578999999865432 444333211 00 115678999997 543332221 1
Q ss_pred cccCccceeeeecCCCCCCC-----CceEEeec-ccccccceecCCCceEEEEeeccccceEEEEEcCCCCCC-Cce-ee
Q 005240 270 VEVSPRDIIYTQPAEPAEGE-----KPEILHKL-DLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDV-APR-VL 341 (706)
Q Consensus 270 ~~~~~~~~l~~~d~~~~~~~-----~~~~l~~~-~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~-~~~-~l 341 (706)
...+|++++ ..+ +++.|... ......+... |..+++.++......+|+.++++.... ... .+
T Consensus 251 -----~s~v~~~d~---~~~~~~~~~~~~l~~~~~~~~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l 320 (414)
T PF02897_consen 251 -----ESEVYLLDL---DDGGSPDAKPKLLSPREDGVEYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVL 320 (414)
T ss_dssp -----EEEEEEEEC---CCTTTSS-SEEEEEESSSS-EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEE
T ss_pred -----CCeEEEEec---cccCCCcCCcEEEeCCCCceEEEEEcc--CCEEEEeeCCCCCCcEEEEecccccccccceeEE
Confidence 135889988 332 55666543 3343444444 556666666666788999999998541 112 22
Q ss_pred ecCcccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecC-CCceeeeecccchhhhh
Q 005240 342 FDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDIN-TGSKERIWESNREKYFE 420 (706)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~-~g~~~~l~~~~~~~~~~ 420 (706)
....- +...-.++..+.+|++.... .....|..+++. +.....+......
T Consensus 321 ~~~~~-------~~~l~~~~~~~~~Lvl~~~~------------------~~~~~l~v~~~~~~~~~~~~~~p~~g---- 371 (414)
T PF02897_consen 321 IPEDE-------DVSLEDVSLFKDYLVLSYRE------------------NGSSRLRVYDLDDGKESREIPLPEAG---- 371 (414)
T ss_dssp E--SS-------SEEEEEEEEETTEEEEEEEE------------------TTEEEEEEEETT-TEEEEEEESSSSS----
T ss_pred cCCCC-------ceeEEEEEEECCEEEEEEEE------------------CCccEEEEEECCCCcEEeeecCCcce----
Confidence 22110 00112234556666665533 223467778887 3333333222211
Q ss_pred hhhhhccCCCceecccCCCEEEEEEecCCCCcEEEEEECCCCceeEeec
Q 005240 421 TAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITN 469 (706)
Q Consensus 421 ~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~p~~v~~~~~~~~~~~~lt~ 469 (706)
.+ ...+..+++..+.|.+++..+|+.+|.+|+++++.+.|..
T Consensus 372 ~v-------~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~k~ 413 (414)
T PF02897_consen 372 SV-------SGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLLKQ 413 (414)
T ss_dssp EE-------EEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEEEE
T ss_pred EE-------eccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEEEe
Confidence 01 1245567889999999999999999999999999988863
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >COG3509 LpqC Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.22 E-value=2e-10 Score=109.75 Aligned_cols=130 Identities=25% Similarity=0.287 Sum_probs=91.7
Q ss_pred CCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHH-HCCeEEEEcCCCCcC--
Q 005240 491 DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFL-ARRFAVLAGPSIPII-- 567 (706)
Q Consensus 491 dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~G~~v~~~~~~~~~-- 567 (706)
+|...+++||.|+..+.+ .|+||++||+.... .++... + -...++ ..||.|+.++..+..
T Consensus 43 ~g~~r~y~l~vP~g~~~~----apLvv~LHG~~~sg---ag~~~~-----s-----g~d~lAd~~gFlV~yPdg~~~~wn 105 (312)
T COG3509 43 NGLKRSYRLYVPPGLPSG----APLVVVLHGSGGSG---AGQLHG-----T-----GWDALADREGFLVAYPDGYDRAWN 105 (312)
T ss_pred CCCccceEEEcCCCCCCC----CCEEEEEecCCCCh---HHhhcc-----c-----chhhhhcccCcEEECcCccccccC
Confidence 678899999999986543 39999999985321 111110 0 123345 489999986443221
Q ss_pred --CCCCCCCch--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCC
Q 005240 568 --GEGDKLPND--RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSY 637 (706)
Q Consensus 568 --g~g~~~~~~--~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~ 637 (706)
+.+..+... .-..+.+..+.+.+..|+.+.-|||.||.|.|.|.||.|+..+++.+|++|.|+..+++..
T Consensus 106 ~~~~~~~~~p~~~~~g~ddVgflr~lva~l~~~~gidp~RVyvtGlS~GG~Ma~~lac~~p~~faa~A~VAg~~ 179 (312)
T COG3509 106 ANGCGNWFGPADRRRGVDDVGFLRALVAKLVNEYGIDPARVYVTGLSNGGRMANRLACEYPDIFAAIAPVAGLL 179 (312)
T ss_pred CCcccccCCcccccCCccHHHHHHHHHHHHHHhcCcCcceEEEEeeCcHHHHHHHHHhcCcccccceeeeeccc
Confidence 111111111 1223557778888888988888999999999999999999999999999999999988765
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.1e-08 Score=103.65 Aligned_cols=63 Identities=27% Similarity=0.389 Sum_probs=46.5
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEe
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTI 105 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~ 105 (706)
.+..+++||||+++|-+.. ...++++|-++|+..-.... ...-.+.+-.+.||||+++|+..+
T Consensus 192 FV~~VRysPDG~~Fat~gs----------Dgki~iyDGktge~vg~l~~-~~aHkGsIfalsWsPDs~~~~T~S 254 (603)
T KOG0318|consen 192 FVNCVRYSPDGSRFATAGS----------DGKIYIYDGKTGEKVGELED-SDAHKGSIFALSWSPDSTQFLTVS 254 (603)
T ss_pred ceeeEEECCCCCeEEEecC----------CccEEEEcCCCccEEEEecC-CCCccccEEEEEECCCCceEEEec
Confidence 6788999999999988743 46899999888876554332 112233466889999999988764
|
|
| >PLN02652 hydrolase; alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.8e-09 Score=113.83 Aligned_cols=131 Identities=16% Similarity=0.048 Sum_probs=92.2
Q ss_pred ceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEE
Q 005240 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 560 (706)
Q Consensus 481 ~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~ 560 (706)
......+...++..+....+.|..- .+.|+||++||.+.. ......++..|+++||.|+.
T Consensus 109 ~~~~~~~~~~~~~~l~~~~~~p~~~-----~~~~~Vl~lHG~~~~---------------~~~~~~~a~~L~~~Gy~V~~ 168 (395)
T PLN02652 109 RWATSLFYGARRNALFCRSWAPAAG-----EMRGILIIIHGLNEH---------------SGRYLHFAKQLTSCGFGVYA 168 (395)
T ss_pred eEEEEEEECCCCCEEEEEEecCCCC-----CCceEEEEECCchHH---------------HHHHHHHHHHHHHCCCEEEE
Confidence 4566667777888999999999641 124789999995311 00112456678889999999
Q ss_pred cCCCCcCCCCCCCCc---hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCC---ceeEEEecc
Q 005240 561 GPSIPIIGEGDKLPN---DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH---LFCCGIARS 634 (706)
Q Consensus 561 ~~~~~~~g~g~~~~~---~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~---~~~a~v~~~ 634 (706)
.+.+ |+|.+... ....+...+|+..+++++..+. +..++.|+||||||.+++.++. +|+ +++++|+.+
T Consensus 169 ~D~r---GhG~S~~~~~~~~~~~~~~~Dl~~~l~~l~~~~--~~~~i~lvGhSmGG~ial~~a~-~p~~~~~v~glVL~s 242 (395)
T PLN02652 169 MDWI---GHGGSDGLHGYVPSLDYVVEDTEAFLEKIRSEN--PGVPCFLFGHSTGGAVVLKAAS-YPSIEDKLEGIVLTS 242 (395)
T ss_pred eCCC---CCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHHHHHHHHHHh-ccCcccccceEEEEC
Confidence 6665 45544332 2245667889999999987652 2347999999999999987764 554 788999888
Q ss_pred CCC
Q 005240 635 GSY 637 (706)
Q Consensus 635 ~~~ 637 (706)
|..
T Consensus 243 P~l 245 (395)
T PLN02652 243 PAL 245 (395)
T ss_pred ccc
Confidence 853
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.21 E-value=8.3e-09 Score=108.83 Aligned_cols=296 Identities=18% Similarity=0.174 Sum_probs=176.9
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCC--ceeecccCCCccccccccceEEecCCcEEEEEecCCC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETG--EAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSR 109 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g--~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~ 109 (706)
.+..+.|+--|.||||.+. +-.+|-+++-.+. -.+|-.+.. .+...+.||||++|+....+
T Consensus 309 ~I~t~~~N~tGDWiA~g~~---------klgQLlVweWqsEsYVlKQQgH~~------~i~~l~YSpDgq~iaTG~eD-- 371 (893)
T KOG0291|consen 309 KILTVSFNSTGDWIAFGCS---------KLGQLLVWEWQSESYVLKQQGHSD------RITSLAYSPDGQLIATGAED-- 371 (893)
T ss_pred eeeEEEecccCCEEEEcCC---------ccceEEEEEeeccceeeecccccc------ceeeEEECCCCcEEEeccCC--
Confidence 5778899999999999763 3456665554433 233332222 26788999999998865421
Q ss_pred CCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCC-ceecCCC-ceEeeeeeCCCC
Q 005240 110 RDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGTP-AVYTAVEPSPDQ 186 (706)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~-~~~lt~~-~~~~~~~~SpDG 186 (706)
+.+-++|. .|- ....+++ ..++.+.|+..|
T Consensus 372 -----------------------------------------------gKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g 404 (893)
T KOG0291|consen 372 -----------------------------------------------GKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARG 404 (893)
T ss_pred -----------------------------------------------CcEEEEeccCceEEEEeccCCCceEEEEEEecC
Confidence 34556676 552 3345555 678899999999
Q ss_pred cEEEEEeeccCcccccccccccceEEEEecC-CCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccC
Q 005240 187 KYVLITSMHRPYSYKVPCARFSQKVQVWTTD-GKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDR 265 (706)
Q Consensus 187 ~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~ 265 (706)
+.|+-.+.++ .+..||+. ....|.++... |.++. .++--|.|. |+++...+
T Consensus 405 ~~llssSLDG-------------tVRAwDlkRYrNfRTft~P~-----p~Qfs-------cvavD~sGe--lV~AG~~d- 456 (893)
T KOG0291|consen 405 NVLLSSSLDG-------------TVRAWDLKRYRNFRTFTSPE-----PIQFS-------CVAVDPSGE--LVCAGAQD- 456 (893)
T ss_pred CEEEEeecCC-------------eEEeeeecccceeeeecCCC-----ceeee-------EEEEcCCCC--EEEeeccc-
Confidence 9887666653 78889987 45566655432 11111 223334454 55443221
Q ss_pred CCCccccCccceeeeecCCCCCCCCceE-EeecccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecC
Q 005240 266 GDANVEVSPRDIIYTQPAEPAEGEKPEI-LHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDR 344 (706)
Q Consensus 266 ~~~~~~~~~~~~l~~~d~~~~~~~~~~~-l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~ 344 (706)
.-.||+|++ .+|+.-. |..+.+.+..+.|+|+|..|+..+++. ..++|-+=-..++.++..+
T Consensus 457 ---------~F~IfvWS~---qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDk--TVRiW~if~s~~~vEtl~i--- 519 (893)
T KOG0291|consen 457 ---------SFEIFVWSV---QTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDK--TVRIWDIFSSSGTVETLEI--- 519 (893)
T ss_pred ---------eEEEEEEEe---ecCeeeehhcCCCCcceeeEEccccCeEEeccccc--eEEEEEeeccCceeeeEee---
Confidence 124999999 6776654 567788999999999999999887654 4567755333322333333
Q ss_pred cccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCcee----eeecCCCce--eeeecccchhh
Q 005240 345 VFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLD----LFDINTGSK--ERIWESNREKY 418 (706)
Q Consensus 345 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~----~~d~~~g~~--~~l~~~~~~~~ 418 (706)
..++..++++|||+.|++.... +...+|-...+. .+. +-|+..|.. .+++.....
T Consensus 520 -------~sdvl~vsfrPdG~elaVaTld---gqItf~d~~~~~-------q~~~IdgrkD~~~gR~~~D~~ta~~sa-- 580 (893)
T KOG0291|consen 520 -------RSDVLAVSFRPDGKELAVATLD---GQITFFDIKEAV-------QVGSIDGRKDLSGGRKETDRITAENSA-- 580 (893)
T ss_pred -------ccceeEEEEcCCCCeEEEEEec---ceEEEEEhhhce-------eeccccchhhccccccccceeehhhcc--
Confidence 1233457889999999887642 222233222221 111 223333321 122211100
Q ss_pred hhhhhhhccCCCceecccCCCEEEEEEecCCCCcEEEEEECCCCcee
Q 005240 419 FETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSS 465 (706)
Q Consensus 419 ~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~p~~v~~~~~~~~~~~ 465 (706)
.- .-.....+|+||+.|+..+.+.. |.+|+..++-..
T Consensus 581 --~~----K~Ftti~ySaDG~~IlAgG~sn~----iCiY~v~~~vll 617 (893)
T KOG0291|consen 581 --KG----KTFTTICYSADGKCILAGGESNS----ICIYDVPEGVLL 617 (893)
T ss_pred --cC----CceEEEEEcCCCCEEEecCCccc----EEEEECchhhee
Confidence 00 01124689999999987665554 889998887443
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.1e-10 Score=111.28 Aligned_cols=196 Identities=16% Similarity=0.182 Sum_probs=123.5
Q ss_pred CcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCc--eeecccCCCccccccccceEEecCCcEEEEEecCC
Q 005240 31 AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE--AKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSS 108 (706)
Q Consensus 31 ~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~--~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~ 108 (706)
..+++.+|||+|++||.++. +...-+|.+..++.- .+.+..+ ...+.-+.||||.++|+.-..
T Consensus 225 dEVWfl~FS~nGkyLAsaSk--------D~Taiiw~v~~d~~~kl~~tlvgh-----~~~V~yi~wSPDdryLlaCg~-- 289 (519)
T KOG0293|consen 225 DEVWFLQFSHNGKYLASASK--------DSTAIIWIVVYDVHFKLKKTLVGH-----SQPVSYIMWSPDDRYLLACGF-- 289 (519)
T ss_pred CcEEEEEEcCCCeeEeeccC--------CceEEEEEEecCcceeeeeeeecc-----cCceEEEEECCCCCeEEecCc--
Confidence 36999999999999999874 445667887766551 1112111 123778899999998764321
Q ss_pred CCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCCceecCC-C--ceEeeeeeCC
Q 005240 109 RRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGT-P--AVYTAVEPSP 184 (706)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~~~lt~-~--~~~~~~~~Sp 184 (706)
...++++|+ +|..+.+.. + ..+.+.+|-|
T Consensus 290 -----------------------------------------------~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~p 322 (519)
T KOG0293|consen 290 -----------------------------------------------DEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCP 322 (519)
T ss_pred -----------------------------------------------hHheeeccCCcchhhhhcccCcCCCcceeEEcc
Confidence 134778888 665444332 2 4677899999
Q ss_pred CCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEecc
Q 005240 185 DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQD 264 (706)
Q Consensus 185 DG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~ 264 (706)
||.+++..+.+ ..++.|+++|........... | -+..++.++||+. ++.+.
T Consensus 323 Dg~~~V~Gs~d-------------r~i~~wdlDgn~~~~W~gvr~----~--------~v~dlait~Dgk~-vl~v~--- 373 (519)
T KOG0293|consen 323 DGFRFVTGSPD-------------RTIIMWDLDGNILGNWEGVRD----P--------KVHDLAITYDGKY-VLLVT--- 373 (519)
T ss_pred CCceeEecCCC-------------CcEEEecCCcchhhccccccc----c--------eeEEEEEcCCCcE-EEEEe---
Confidence 99998755543 479999999875332221111 1 1347889999998 44332
Q ss_pred CCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCC
Q 005240 265 RGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (706)
Q Consensus 265 ~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~ 333 (706)
.+. .+++++. +...-+.+......+.++..|.||+.++..- .... +.++|++.
T Consensus 374 -~d~--------~i~l~~~---e~~~dr~lise~~~its~~iS~d~k~~LvnL--~~qe--i~LWDl~e 426 (519)
T KOG0293|consen 374 -VDK--------KIRLYNR---EARVDRGLISEEQPITSFSISKDGKLALVNL--QDQE--IHLWDLEE 426 (519)
T ss_pred -ccc--------ceeeech---hhhhhhccccccCceeEEEEcCCCcEEEEEc--ccCe--eEEeecch
Confidence 111 3556665 3323333555667788899999999877643 3333 44555554
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.3e-09 Score=103.99 Aligned_cols=192 Identities=19% Similarity=0.198 Sum_probs=119.0
Q ss_pred ceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCCCC
Q 005240 35 FVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPK 114 (706)
Q Consensus 35 ~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~ 114 (706)
...+||+|++||..+. ..|.+.|.++-+..|+...-.. +..+.|+.|...+.+....
T Consensus 13 ~c~fSp~g~yiAs~~~-----------yrlviRd~~tlq~~qlf~cldk-----i~yieW~ads~~ilC~~yk------- 69 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSR-----------YRLVIRDSETLQLHQLFLCLDK-----IVYIEWKADSCHILCVAYK------- 69 (447)
T ss_pred ceeECCCCCeeeeeee-----------eEEEEeccchhhHHHHHHHHHH-----hhheeeeccceeeeeeeec-------
Confidence 5689999999998753 5899999888887777533221 6678999999988887431
Q ss_pred CCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCC-C-ceecCCC-ceEeeeeeCCCCcEEEE
Q 005240 115 KTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-T-AKDFGTP-AVYTAVEPSPDQKYVLI 191 (706)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g-~-~~~lt~~-~~~~~~~~SpDG~~i~~ 191 (706)
..-+.++++.. + .-.+.++ .......|||||+.|+.
T Consensus 70 -----------------------------------------~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~ 108 (447)
T KOG4497|consen 70 -----------------------------------------DPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILL 108 (447)
T ss_pred -----------------------------------------cceEEEEEeecceeEEEeccCCCcceeeeECCCcceEee
Confidence 13455556533 2 2245555 67789999999999987
Q ss_pred EeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccc
Q 005240 192 TSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVE 271 (706)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~ 271 (706)
++.= ..+|-+|.+.+.+...+.... .+...++|.|||+. .+..+..+=.+....
T Consensus 109 tseF------------~lriTVWSL~t~~~~~~~~pK-------------~~~kg~~f~~dg~f-~ai~sRrDCkdyv~i 162 (447)
T KOG4497|consen 109 TSEF------------DLRITVWSLNTQKGYLLPHPK-------------TNVKGYAFHPDGQF-CAILSRRDCKDYVQI 162 (447)
T ss_pred eecc------------eeEEEEEEeccceeEEecccc-------------cCceeEEECCCCce-eeeeecccHHHHHHH
Confidence 7632 358899999987765553332 23457899999996 444432221111000
Q ss_pred c--CccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccccceEEEEEcC
Q 005240 272 V--SPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCP 331 (706)
Q Consensus 272 ~--~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~ 331 (706)
. ...-.+.-.++ ..-....+.|||||..|++-. .--...+|.+.-
T Consensus 163 ~~c~~W~ll~~f~~-------------dT~DltgieWsPdg~~laVwd--~~Leykv~aYe~ 209 (447)
T KOG4497|consen 163 SSCKAWILLKEFKL-------------DTIDLTGIEWSPDGNWLAVWD--NVLEYKVYAYER 209 (447)
T ss_pred HhhHHHHHHHhcCC-------------CcccccCceECCCCcEEEEec--chhhheeeeeee
Confidence 0 00000111111 123456789999999998743 223445665554
|
|
| >COG2267 PldB Lysophospholipase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.2e-09 Score=110.60 Aligned_cols=190 Identities=18% Similarity=0.148 Sum_probs=133.4
Q ss_pred ceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEE
Q 005240 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 560 (706)
Q Consensus 481 ~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~ 560 (706)
...+..+.+.||..+....+.++.- +..+||++||... +.......+..|+++||.|+.
T Consensus 8 ~~~~~~~~~~d~~~~~~~~~~~~~~------~~g~Vvl~HG~~E---------------h~~ry~~la~~l~~~G~~V~~ 66 (298)
T COG2267 8 TRTEGYFTGADGTRLRYRTWAAPEP------PKGVVVLVHGLGE---------------HSGRYEELADDLAARGFDVYA 66 (298)
T ss_pred ccccceeecCCCceEEEEeecCCCC------CCcEEEEecCchH---------------HHHHHHHHHHHHHhCCCEEEE
Confidence 3445667778999999999988751 1268999999632 111122456788999999998
Q ss_pred cCCCCcCCCCCCC-Cc---hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCC
Q 005240 561 GPSIPIIGEGDKL-PN---DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 636 (706)
Q Consensus 561 ~~~~~~~g~g~~~-~~---~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~ 636 (706)
..-+|+|.+. .. -........|+...++.+.+.. . ..++.++||||||.+++..+.+++..+.++|+.+|.
T Consensus 67 ---~D~RGhG~S~r~~rg~~~~f~~~~~dl~~~~~~~~~~~-~-~~p~~l~gHSmGg~Ia~~~~~~~~~~i~~~vLssP~ 141 (298)
T COG2267 67 ---LDLRGHGRSPRGQRGHVDSFADYVDDLDAFVETIAEPD-P-GLPVFLLGHSMGGLIALLYLARYPPRIDGLVLSSPA 141 (298)
T ss_pred ---ecCCCCCCCCCCCcCCchhHHHHHHHHHHHHHHHhccC-C-CCCeEEEEeCcHHHHHHHHHHhCCccccEEEEECcc
Confidence 3444566553 21 1224566777777777665541 1 368999999999999999999999999999999998
Q ss_pred CCCCC------------------------CC----cc-c-----------------------------------------
Q 005240 637 YNKTL------------------------TP----FG-F----------------------------------------- 646 (706)
Q Consensus 637 ~d~~~------------------------~~----~~-~----------------------------------------- 646 (706)
+.... .+ .. .
T Consensus 142 ~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~sr~~~~~~~~~~dP~~~~~~~~~~w~~~~~~a~~~~~~ 221 (298)
T COG2267 142 LGLGGAILRLILARLALKLLGRIRPKLPVDSNLLEGVLTDDLSRDPAEVAAYEADPLIGVGGPVSRWVDLALLAGRVPAL 221 (298)
T ss_pred ccCChhHHHHHHHHHhcccccccccccccCcccccCcCcchhhcCHHHHHHHhcCCccccCCccHHHHHHHHHhhcccch
Confidence 65330 01 00 0
Q ss_pred ---------------------h-HHHHHHHHHhCCCc-EEEEEeCCCCccCCCcccH--HHHHHHHHHHHHHHhc
Q 005240 647 ---------------------Q-AERFFDALKGHGAL-SRLVLLPFEHHVYAARENV--MHVIWETDRWLQKYCL 696 (706)
Q Consensus 647 ---------------------~-~~~~~~~l~~~~~~-~~~~~~~~~~H~~~~~~~~--~~~~~~~~~f~~~~l~ 696 (706)
. .+...+.+++.+.+ .++++|||+.|........ .++++.+.+||.+++.
T Consensus 222 ~~~~~~~~PvLll~g~~D~vv~~~~~~~~~~~~~~~~~~~~~~~~g~~He~~~E~~~~r~~~~~~~~~~l~~~~~ 296 (298)
T COG2267 222 RDAPAIALPVLLLQGGDDRVVDNVEGLARFFERAGSPDKELKVIPGAYHELLNEPDRAREEVLKDILAWLAEALP 296 (298)
T ss_pred hccccccCCEEEEecCCCccccCcHHHHHHHHhcCCCCceEEecCCcchhhhcCcchHHHHHHHHHHHHHHhhcc
Confidence 0 00333344455554 6999999999999877776 8999999999999764
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.5e-09 Score=107.03 Aligned_cols=193 Identities=18% Similarity=0.161 Sum_probs=122.4
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecC--CcEEEEEecCCC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNN--STLLIFTIPSSR 109 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpD--g~~l~~~~~~~~ 109 (706)
.+....||+|++.||..+- +|...||-++ .....+...+... .+....|+|. +..|+..+.+
T Consensus 177 Pis~~~fS~ds~~laT~sw--------sG~~kvW~~~--~~~~~~~l~gH~~----~v~~~~fhP~~~~~~lat~s~D-- 240 (459)
T KOG0272|consen 177 PISGCSFSRDSKHLATGSW--------SGLVKVWSVP--QCNLLQTLRGHTS----RVGAAVFHPVDSDLNLATASAD-- 240 (459)
T ss_pred cceeeEeecCCCeEEEeec--------CCceeEeecC--CcceeEEEecccc----ceeeEEEccCCCccceeeeccC--
Confidence 4667899999999998764 6667787654 4454444433322 2778899997 4456654321
Q ss_pred CCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCC--CceecCCC-ceEeeeeeCCCC
Q 005240 110 RDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG--TAKDFGTP-AVYTAVEPSPDQ 186 (706)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g--~~~~lt~~-~~~~~~~~SpDG 186 (706)
+.+-++++++ ....|+.. ..+..++|.|+|
T Consensus 241 -----------------------------------------------gtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG 273 (459)
T KOG0272|consen 241 -----------------------------------------------GTVKLWKLSQETPLQDLEGHLARVSRVAFHPSG 273 (459)
T ss_pred -----------------------------------------------CceeeeccCCCcchhhhhcchhhheeeeecCCC
Confidence 2333444433 44555555 677899999999
Q ss_pred cEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCC
Q 005240 187 KYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRG 266 (706)
Q Consensus 187 ~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~ 266 (706)
++|.-.+.+. .-.+||+.++..-.+ ..+.. .++..++|.+||. |+.. .+-
T Consensus 274 ~~L~TasfD~-------------tWRlWD~~tk~ElL~--QEGHs----------~~v~~iaf~~DGS--L~~t---GGl 323 (459)
T KOG0272|consen 274 KFLGTASFDS-------------TWRLWDLETKSELLL--QEGHS----------KGVFSIAFQPDGS--LAAT---GGL 323 (459)
T ss_pred ceeeeccccc-------------chhhcccccchhhHh--hcccc----------cccceeEecCCCc--eeec---cCc
Confidence 9998776654 345789887643222 22221 4567899999998 4422 222
Q ss_pred CCccccCccceeeeecCCCCCCCC-ceEEeecccccccceecCCCceEEEEeeccccceEEEEEc
Q 005240 267 DANVEVSPRDIIYTQPAEPAEGEK-PEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVC 330 (706)
Q Consensus 267 ~~~~~~~~~~~l~~~d~~~~~~~~-~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d 330 (706)
+. .-.+||+ .+|. +-.|..+...+..+.|||+|-.|+..+.+ ..-+||.+-
T Consensus 324 D~--------~~RvWDl---Rtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~D--nt~kVWDLR 375 (459)
T KOG0272|consen 324 DS--------LGRVWDL---RTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSD--NTCKVWDLR 375 (459)
T ss_pred cc--------hhheeec---ccCcEEEEecccccceeeEeECCCceEEeecCCC--CcEEEeeec
Confidence 22 1346777 4443 33345678889999999999999976532 345566554
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.4e-08 Score=102.14 Aligned_cols=157 Identities=13% Similarity=0.071 Sum_probs=81.1
Q ss_pred ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCC-Cee-EEcccCCCCCCCCcccCccCCCCcceeeecC
Q 005240 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG-KLV-RELCDLPPAEDIPVCYNSVREGMRSISWRAD 252 (706)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~-~~l~~~~~~~~~p~~~~~~~~g~~~~~~spd 252 (706)
.....++++|||++|+..... ...+.+|+++. +.. +.+....+. .++..+.++||
T Consensus 80 ~~p~~i~~~~~g~~l~v~~~~------------~~~v~v~~~~~~g~~~~~~~~~~~~-----------~~~~~~~~~p~ 136 (330)
T PRK11028 80 GSPTHISTDHQGRFLFSASYN------------ANCVSVSPLDKDGIPVAPIQIIEGL-----------EGCHSANIDPD 136 (330)
T ss_pred CCceEEEECCCCCEEEEEEcC------------CCeEEEEEECCCCCCCCceeeccCC-----------CcccEeEeCCC
Confidence 356689999999999766543 24788888862 211 111111110 12335689999
Q ss_pred CCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceE-----Ee-ecccccccceecCCCceEEEEeeccccceEE
Q 005240 253 KPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEI-----LH-KLDLRFRSVSWCDDSLALVNETWYKTSQTRT 326 (706)
Q Consensus 253 g~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~-----l~-~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l 326 (706)
|+. |+.. +. ..+.|.++|++ ..+.+.. +. ........+.|+|||++++... +.++...+
T Consensus 137 g~~-l~v~-~~----------~~~~v~v~d~~--~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~-~~~~~v~v 201 (330)
T PRK11028 137 NRT-LWVP-CL----------KEDRIRLFTLS--DDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVN-ELNSSVDV 201 (330)
T ss_pred CCE-EEEe-eC----------CCCEEEEEEEC--CCCcccccCCCceecCCCCCCceEEECCCCCEEEEEe-cCCCEEEE
Confidence 986 5533 22 11247777773 2233221 11 1123345689999999888764 33344445
Q ss_pred EEEcCCCCCCCceeeecCccc-ccccCCC-CCceEeccCCCEEEEee
Q 005240 327 WLVCPGSKDVAPRVLFDRVFE-NVYSDPG-SPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 327 ~~~d~~~~~~~~~~l~~~~~~-~~~~~~~-~~~~~~s~dg~~l~~~~ 371 (706)
|.++..++ +.+.+..-... .-...+. ...+.++|||++++...
T Consensus 202 ~~~~~~~~--~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~ 246 (330)
T PRK11028 202 WQLKDPHG--EIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACD 246 (330)
T ss_pred EEEeCCCC--CEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEec
Confidence 55543332 22222111100 0000111 11366799999988763
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.8e-09 Score=96.68 Aligned_cols=271 Identities=14% Similarity=0.209 Sum_probs=154.6
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~ 111 (706)
.+..++|+-||.+||-.+. ++...+|.++.. +.+......+....+..+.|+|-..-+++++..
T Consensus 22 ~v~Sv~wn~~g~~lasgs~--------dktv~v~n~e~~----r~~~~~~~~gh~~svdql~w~~~~~d~~atas~---- 85 (313)
T KOG1407|consen 22 KVHSVAWNCDGTKLASGSF--------DKTVSVWNLERD----RFRKELVYRGHTDSVDQLCWDPKHPDLFATASG---- 85 (313)
T ss_pred cceEEEEcccCceeeeccc--------CCceEEEEecch----hhhhhhcccCCCcchhhheeCCCCCcceEEecC----
Confidence 4788999999999998764 455566655543 222222222222236788998755433443211
Q ss_pred CCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCCceecCCC-ceEeeeeeCCCCcEE
Q 005240 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYV 189 (706)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~~~lt~~-~~~~~~~~SpDG~~i 189 (706)
...+-++|. .+++..-++. ...-.+.|||||+++
T Consensus 86 --------------------------------------------dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~ 121 (313)
T KOG1407|consen 86 --------------------------------------------DKTIRIWDIRSGKCTARIETKGENINITWSPDGEYI 121 (313)
T ss_pred --------------------------------------------CceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEE
Confidence 134556677 5655443333 556688999999999
Q ss_pred EEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCc
Q 005240 190 LITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDAN 269 (706)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~ 269 (706)
++..... .|-.+|...-++..-.. .+++ .-.+.|+.++. ++|+.+-. |...
T Consensus 122 ~~~~kdD-------------~it~id~r~~~~~~~~~------~~~e-------~ne~~w~~~nd--~Fflt~Gl-G~v~ 172 (313)
T KOG1407|consen 122 AVGNKDD-------------RITFIDARTYKIVNEEQ------FKFE-------VNEISWNNSND--LFFLTNGL-GCVE 172 (313)
T ss_pred EEecCcc-------------cEEEEEecccceeehhc------ccce-------eeeeeecCCCC--EEEEecCC-ceEE
Confidence 9877653 45555554333222111 1111 22678886655 77774321 2111
Q ss_pred cccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceee--ecCccc
Q 005240 270 VEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVL--FDRVFE 347 (706)
Q Consensus 270 ~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l--~~~~~~ 347 (706)
|..++. -..++.|..++....-+.|+|+|++++..+.+ ....|| |++.- ...+.+ .++++.
T Consensus 173 --------ILsyps----Lkpv~si~AH~snCicI~f~p~GryfA~GsAD--AlvSLW--D~~EL-iC~R~isRldwpVR 235 (313)
T KOG1407|consen 173 --------ILSYPS----LKPVQSIKAHPSNCICIEFDPDGRYFATGSAD--ALVSLW--DVDEL-ICERCISRLDWPVR 235 (313)
T ss_pred --------EEeccc----cccccccccCCcceEEEEECCCCceEeecccc--ceeecc--ChhHh-hhheeeccccCceE
Confidence 222221 12233456667777788999999999987632 233344 44331 123333 244433
Q ss_pred ccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeeecccchhhhhhhhhhcc
Q 005240 348 NVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVF 427 (706)
Q Consensus 348 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~ 427 (706)
. ++||.||++|+.... ..++...+..||. ++|+.+-. +
T Consensus 236 T---------lSFS~dg~~lASaSE---------------------Dh~IDIA~vetGd--~~~eI~~~----------~ 273 (313)
T KOG1407|consen 236 T---------LSFSHDGRMLASASE---------------------DHFIDIAEVETGD--RVWEIPCE----------G 273 (313)
T ss_pred E---------EEeccCcceeeccCc---------------------cceEEeEecccCC--eEEEeecc----------C
Confidence 2 678999999876541 1234455666774 56665422 2
Q ss_pred CCCceecccCCCEEEEEEecCCC
Q 005240 428 GQGEEDINLNQLKILTSKESKTE 450 (706)
Q Consensus 428 ~~~~~~~s~Dg~~l~~~~~~~~~ 450 (706)
....++|.|....|+|+.++.+.
T Consensus 274 ~t~tVAWHPk~~LLAyA~ddk~~ 296 (313)
T KOG1407|consen 274 PTFTVAWHPKRPLLAYACDDKDG 296 (313)
T ss_pred CceeEEecCCCceeeEEecCCCC
Confidence 34468999998888888766653
|
|
| >COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.6e-10 Score=99.98 Aligned_cols=187 Identities=17% Similarity=0.173 Sum_probs=120.5
Q ss_pred eEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEc
Q 005240 482 KEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAG 561 (706)
Q Consensus 482 ~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~ 561 (706)
++++.+.+.-| .+++. +.|.. . ...|+.|.+|..|...|. ..+..-...+..|.++||+++..
T Consensus 4 ~~~v~i~Gp~G-~le~~-~~~~~-~----~~~~iAli~HPHPl~gGt----------m~nkvv~~la~~l~~~G~atlRf 66 (210)
T COG2945 4 MPTVIINGPAG-RLEGR-YEPAK-T----PAAPIALICHPHPLFGGT----------MNNKVVQTLARALVKRGFATLRF 66 (210)
T ss_pred CCcEEecCCcc-cceec-cCCCC-C----CCCceEEecCCCccccCc----------cCCHHHHHHHHHHHhCCceEEee
Confidence 34555655444 44443 44543 1 136888889988754211 22222334566788899999997
Q ss_pred CCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCC---
Q 005240 562 PSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYN--- 638 (706)
Q Consensus 562 ~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d--- 638 (706)
|+|| -|++....+.+-.+.+|..++++|++++.. +..-..++|+|+|++++..++.+.|+. ...++..|..+
T Consensus 67 NfRg---VG~S~G~fD~GiGE~~Da~aaldW~~~~hp-~s~~~~l~GfSFGa~Ia~~la~r~~e~-~~~is~~p~~~~~d 141 (210)
T COG2945 67 NFRG---VGRSQGEFDNGIGELEDAAAALDWLQARHP-DSASCWLAGFSFGAYIAMQLAMRRPEI-LVFISILPPINAYD 141 (210)
T ss_pred cccc---cccccCcccCCcchHHHHHHHHHHHHhhCC-CchhhhhcccchHHHHHHHHHHhcccc-cceeeccCCCCchh
Confidence 7764 444544444445568999999999999854 333458899999999999999999653 33344444444
Q ss_pred CC-CC--Cc--c-c-----hHHHHHHHHHh-CCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 005240 639 KT-LT--PF--G-F-----QAERFFDALKG-HGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQ 692 (706)
Q Consensus 639 ~~-~~--~~--~-~-----~~~~~~~~l~~-~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~~ 692 (706)
.. .. |. . . +-..+..+|+. ++.+.++++.++++|.|.. +...+.+.+.+|+.
T Consensus 142 fs~l~P~P~~~lvi~g~~Ddvv~l~~~l~~~~~~~~~~i~i~~a~HFF~g--Kl~~l~~~i~~~l~ 205 (210)
T COG2945 142 FSFLAPCPSPGLVIQGDADDVVDLVAVLKWQESIKITVITIPGADHFFHG--KLIELRDTIADFLE 205 (210)
T ss_pred hhhccCCCCCceeEecChhhhhcHHHHHHhhcCCCCceEEecCCCceecc--cHHHHHHHHHHHhh
Confidence 11 11 21 1 1 11266666664 3478899999999999975 45677788888884
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.6e-08 Score=92.45 Aligned_cols=198 Identities=12% Similarity=0.049 Sum_probs=130.8
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcC-----CCceee-cccCCCccccccccceEEecCCcEEEEEe
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAE-----TGEAKP-LFESPDICLNAVFGSFVWVNNSTLLIFTI 105 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~-----~g~~~~-lt~~~~~~~~~~~~~~~wSpDg~~l~~~~ 105 (706)
.+...+..+.+..+.+.+.+| ..+.++++. .|.+.+ ++-+.+ .+.....|+||.+.+..+
T Consensus 17 ~Vt~la~~~~~~~~l~sasrD---------k~ii~W~L~~dd~~~G~~~r~~~GHsH-----~v~dv~~s~dg~~alS~s 82 (315)
T KOG0279|consen 17 WVTALAIKIKNSDILVSASRD---------KTIIVWKLTSDDIKYGVPVRRLTGHSH-----FVSDVVLSSDGNFALSAS 82 (315)
T ss_pred eEEEEEeecCCCceEEEcccc---------eEEEEEEeccCccccCceeeeeeccce-----EecceEEccCCceEEecc
Confidence 577888889988898887653 344444443 344444 443222 377899999999644332
Q ss_pred cCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCCceecCCC--ceEeeeee
Q 005240 106 PSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP--AVYTAVEP 182 (706)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~~~lt~~--~~~~~~~~ 182 (706)
. ...|.++|+ .|+.++...+ .++.++++
T Consensus 83 w-------------------------------------------------D~~lrlWDl~~g~~t~~f~GH~~dVlsva~ 113 (315)
T KOG0279|consen 83 W-------------------------------------------------DGTLRLWDLATGESTRRFVGHTKDVLSVAF 113 (315)
T ss_pred c-------------------------------------------------cceEEEEEecCCcEEEEEEecCCceEEEEe
Confidence 1 156788899 5666655555 78999999
Q ss_pred CCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEe
Q 005240 183 SPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEA 262 (706)
Q Consensus 183 SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~ 262 (706)
|||.++|+-.+.+ ..|.+|+.-|...-++...... +.+..+.|+|+... .+.++
T Consensus 114 s~dn~qivSGSrD-------------kTiklwnt~g~ck~t~~~~~~~-----------~WVscvrfsP~~~~-p~Ivs- 167 (315)
T KOG0279|consen 114 STDNRQIVSGSRD-------------KTIKLWNTLGVCKYTIHEDSHR-----------EWVSCVRFSPNESN-PIIVS- 167 (315)
T ss_pred cCCCceeecCCCc-------------ceeeeeeecccEEEEEecCCCc-----------CcEEEEEEcCCCCC-cEEEE-
Confidence 9999999754433 4799999988776655544211 22447799999754 33332
Q ss_pred ccCCCCccccCccceeeeecCCCCCCCCceE-EeecccccccceecCCCceEEEEeeccccceEEEEEcCCCC
Q 005240 263 QDRGDANVEVSPRDIIYTQPAEPAEGEKPEI-LHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK 334 (706)
Q Consensus 263 ~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~-l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~ 334 (706)
.+ +...+.+||+ ++-+.+. ...+.+.+..+++||||..+++.. + ...++++|++.+
T Consensus 168 -~s--------~DktvKvWnl---~~~~l~~~~~gh~~~v~t~~vSpDGslcasGg--k--dg~~~LwdL~~~ 224 (315)
T KOG0279|consen 168 -AS--------WDKTVKVWNL---RNCQLRTTFIGHSGYVNTVTVSPDGSLCASGG--K--DGEAMLWDLNEG 224 (315)
T ss_pred -cc--------CCceEEEEcc---CCcchhhccccccccEEEEEECCCCCEEecCC--C--CceEEEEEccCC
Confidence 11 2235888998 5555544 346688899999999999888632 2 345677777774
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.4e-09 Score=105.88 Aligned_cols=98 Identities=17% Similarity=0.134 Sum_probs=56.7
Q ss_pred cceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCc-eEEeecccccccceecCCCceEEEEeeccccc
Q 005240 245 RSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP-EILHKLDLRFRSVSWCDDSLALVNETWYKTSQ 323 (706)
Q Consensus 245 ~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~-~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 323 (706)
..+.||||++. |+-.+ .+. -|.+|+. .+|+. ..+-.+-..++.++||.|.+.|+..+ .+..
T Consensus 371 n~V~fSPd~r~-IASaS----FDk--------SVkLW~g---~tGk~lasfRGHv~~VYqvawsaDsRLlVS~S--kDsT 432 (480)
T KOG0271|consen 371 NHVSFSPDGRY-IASAS----FDK--------SVKLWDG---RTGKFLASFRGHVAAVYQVAWSADSRLLVSGS--KDST 432 (480)
T ss_pred eeEEECCCccE-EEEee----ccc--------ceeeeeC---CCcchhhhhhhccceeEEEEeccCccEEEEcC--CCce
Confidence 36799999986 54222 122 2566766 44443 33445677889999999999888654 2234
Q ss_pred eEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEe
Q 005240 324 TRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAK 370 (706)
Q Consensus 324 ~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 370 (706)
.++| ++.+.+ ...|-.. ...-+|.+-|||||..++..
T Consensus 433 LKvw--~V~tkK----l~~DLpG----h~DEVf~vDwspDG~rV~sg 469 (480)
T KOG0271|consen 433 LKVW--DVRTKK----LKQDLPG----HADEVFAVDWSPDGQRVASG 469 (480)
T ss_pred EEEE--Eeeeee----ecccCCC----CCceEEEEEecCCCceeecC
Confidence 4444 444421 1112110 01123457799999987653
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1e-07 Score=93.23 Aligned_cols=313 Identities=12% Similarity=0.051 Sum_probs=171.3
Q ss_pred eEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCc
Q 005240 44 RIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPK 123 (706)
Q Consensus 44 ~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~ 123 (706)
..+|+.+..+ ..+..-.+|.+|.++|+...+-..... ..+.-++|+|+++.||........
T Consensus 3 ~~~YiGtyT~---~~s~gI~v~~ld~~~g~l~~~~~v~~~---~nptyl~~~~~~~~LY~v~~~~~~------------- 63 (346)
T COG2706 3 QTVYIGTYTK---RESQGIYVFNLDTKTGELSLLQLVAEL---GNPTYLAVNPDQRHLYVVNEPGEE------------- 63 (346)
T ss_pred eEEEEeeecc---cCCCceEEEEEeCcccccchhhhcccc---CCCceEEECCCCCEEEEEEecCCc-------------
Confidence 4456655321 113334455555556655433211110 125677899999998876432110
Q ss_pred eeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCCceecCCC----ceEeeeeeCCCCcEEEEEeeccCc
Q 005240 124 IQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP----AVYTAVEPSPDQKYVLITSMHRPY 198 (706)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~~~lt~~----~~~~~~~~SpDG~~i~~~~~~~~~ 198 (706)
+.-.-|.+|- +|+.+.+... .....+++++||++|+...-..
T Consensus 64 -------------------------------ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~-- 110 (346)
T COG2706 64 -------------------------------GGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHS-- 110 (346)
T ss_pred -------------------------------CcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccC--
Confidence 1234566665 4765555332 3346788999998886544332
Q ss_pred ccccccccccceEEEEecCC-CeeEEc---ccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCc
Q 005240 199 SYKVPCARFSQKVQVWTTDG-KLVREL---CDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSP 274 (706)
Q Consensus 199 ~~~~~~~~~~~~i~~~~~~~-~~~~~l---~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~ 274 (706)
..|.++.++. +.+..+ ..+.+..-.+.+.. ...-...+.||++. |+.+ +-+.
T Consensus 111 ----------g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~---~h~H~a~~tP~~~~-l~v~---DLG~------- 166 (346)
T COG2706 111 ----------GSVSVYPLQADGSLQPVVQVVKHTGSGPHERQES---PHVHSANFTPDGRY-LVVP---DLGT------- 166 (346)
T ss_pred ----------ceEEEEEcccCCccccceeeeecCCCCCCccccC---CccceeeeCCCCCE-EEEe---ecCC-------
Confidence 3566666642 322222 11111100010000 01224578899986 4433 2222
Q ss_pred cceeeeecCCCCCCCCceEEe----ecccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceee--ecCcccc
Q 005240 275 RDIIYTQPAEPAEGEKPEILH----KLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVL--FDRVFEN 348 (706)
Q Consensus 275 ~~~l~~~d~~~~~~~~~~~l~----~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l--~~~~~~~ 348 (706)
++|+++++ +.|..+... ........+.|+|+++..+...+. +....+|.++...+ +...| ...--++
T Consensus 167 -Dri~~y~~---~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL-~stV~v~~y~~~~g--~~~~lQ~i~tlP~d 239 (346)
T COG2706 167 -DRIFLYDL---DDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNEL-NSTVDVLEYNPAVG--KFEELQTIDTLPED 239 (346)
T ss_pred -ceEEEEEc---ccCccccccccccCCCCCcceEEEcCCCcEEEEEecc-CCEEEEEEEcCCCc--eEEEeeeeccCccc
Confidence 34777777 345444322 334456778999999987776533 35667888887754 33333 1111122
Q ss_pred cccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeee--ecccchhhhhhhhhhc
Q 005240 349 VYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERI--WESNREKYFETAVALV 426 (706)
Q Consensus 349 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l--~~~~~~~~~~~~~~~~ 426 (706)
.....+...+..++||++|+++... -+...++.+|.++|+.+-+ +...+. .
T Consensus 240 F~g~~~~aaIhis~dGrFLYasNRg------------------~dsI~~f~V~~~~g~L~~~~~~~teg~-----~---- 292 (346)
T COG2706 240 FTGTNWAAAIHISPDGRFLYASNRG------------------HDSIAVFSVDPDGGKLELVGITPTEGQ-----F---- 292 (346)
T ss_pred cCCCCceeEEEECCCCCEEEEecCC------------------CCeEEEEEEcCCCCEEEEEEEeccCCc-----C----
Confidence 2223344568889999999887521 1233467788887764333 222210 0
Q ss_pred cCCCceecccCCCEEEEEEecCCCCcEEEEEECCCCceeEeec
Q 005240 427 FGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITN 469 (706)
Q Consensus 427 ~~~~~~~~s~Dg~~l~~~~~~~~~p~~v~~~~~~~~~~~~lt~ 469 (706)
+ +.+.++++|+.|+.+.....+ -.+|..|.++|+.+.+..
T Consensus 293 P--R~F~i~~~g~~Liaa~q~sd~-i~vf~~d~~TG~L~~~~~ 332 (346)
T COG2706 293 P--RDFNINPSGRFLIAANQKSDN-ITVFERDKETGRLTLLGR 332 (346)
T ss_pred C--ccceeCCCCCEEEEEccCCCc-EEEEEEcCCCceEEeccc
Confidence 1 246899999888877665554 668888888888777764
|
|
| >PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively [] | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.3e-10 Score=114.24 Aligned_cols=139 Identities=22% Similarity=0.270 Sum_probs=90.1
Q ss_pred CCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCC
Q 005240 491 DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEG 570 (706)
Q Consensus 491 dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g 570 (706)
||+.|.+.+|+| +.+. .+|+|+||..|+=.... + ................+.|+++||+|+..+.| |.|
T Consensus 1 DGv~L~adv~~P-~~~~--~~~~P~il~~tpY~~~~----~-~~~~~~~~~~~~~~~~~~~~~~GY~vV~~D~R---G~g 69 (272)
T PF02129_consen 1 DGVRLAADVYRP-GADG--GGPFPVILTRTPYGKGD----Q-TASDLAGANPGPPSARRPFAERGYAVVVQDVR---GTG 69 (272)
T ss_dssp TS-EEEEEEEEE---TT--SSSEEEEEEEESSTCTC------HHHHHHTTCHHSHGGGHHHHHTT-EEEEEE-T---TST
T ss_pred CCCEEEEEEEec-CCCC--CCcccEEEEccCcCCCC----C-cccchhhhhcccchhHHHHHhCCCEEEEECCc---ccc
Confidence 799999999999 3222 34799999987521100 0 00000000000000112389999999986665 444
Q ss_pred CCCCchhh-HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCCCCC
Q 005240 571 DKLPNDRF-VEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTL 641 (706)
Q Consensus 571 ~~~~~~~~-~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d~~~ 641 (706)
.+...... .....+|..++|+|+.++++- ..|||++|.||+|+.++.++...|..++|++...+..|...
T Consensus 70 ~S~G~~~~~~~~e~~D~~d~I~W~~~Qpws-~G~VGm~G~SY~G~~q~~~A~~~~p~LkAi~p~~~~~d~~~ 140 (272)
T PF02129_consen 70 GSEGEFDPMSPNEAQDGYDTIEWIAAQPWS-NGKVGMYGISYGGFTQWAAAARRPPHLKAIVPQSGWSDLYR 140 (272)
T ss_dssp TS-S-B-TTSHHHHHHHHHHHHHHHHCTTE-EEEEEEEEETHHHHHHHHHHTTT-TTEEEEEEESE-SBTCC
T ss_pred cCCCccccCChhHHHHHHHHHHHHHhCCCC-CCeEEeeccCHHHHHHHHHHhcCCCCceEEEecccCCcccc
Confidence 45444333 667899999999999999654 47999999999999999999988899999999999887554
|
It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A .... |
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.6e-08 Score=93.16 Aligned_cols=270 Identities=14% Similarity=0.159 Sum_probs=161.7
Q ss_pred cceeEeecCCCCCCCCee-eeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCc
Q 005240 5 TGIGIHRLLPDDSLGPEK-EVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~-~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~ 83 (706)
-+|.+..+.+ |.-. .|. .+++ .+....++||++.||.+ +...|.++|+.++.+.++....+.
T Consensus 20 hTIRfWqa~t----G~C~rTiq-h~ds-qVNrLeiTpdk~~LAaa-----------~~qhvRlyD~~S~np~Pv~t~e~h 82 (311)
T KOG0315|consen 20 HTIRFWQALT----GICSRTIQ-HPDS-QVNRLEITPDKKDLAAA-----------GNQHVRLYDLNSNNPNPVATFEGH 82 (311)
T ss_pred ceeeeeehhc----CeEEEEEe-cCcc-ceeeEEEcCCcchhhhc-----------cCCeeEEEEccCCCCCceeEEecc
Confidence 3566666666 5433 343 3443 58889999999999984 457888899998887666433322
Q ss_pred cccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEc
Q 005240 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (706)
Q Consensus 84 ~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~ 163 (706)
...+..+.|.-||+++|..+.+ +.+-++|
T Consensus 83 --~kNVtaVgF~~dgrWMyTgseD-------------------------------------------------gt~kIWd 111 (311)
T KOG0315|consen 83 --TKNVTAVGFQCDGRWMYTGSED-------------------------------------------------GTVKIWD 111 (311)
T ss_pred --CCceEEEEEeecCeEEEecCCC-------------------------------------------------ceEEEEe
Confidence 1236788899999998865421 4556667
Q ss_pred cCC-CceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCC-eeEEcccCCCCCCCCcccCcc
Q 005240 164 LDG-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK-LVRELCDLPPAEDIPVCYNSV 240 (706)
Q Consensus 164 l~g-~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~~~~~p~~~~~~ 240 (706)
+.. ..+++... ..+..+...|+...|+... . ...|++||+... -..+|...+.
T Consensus 112 lR~~~~qR~~~~~spVn~vvlhpnQteLis~d-q------------sg~irvWDl~~~~c~~~liPe~~----------- 167 (311)
T KOG0315|consen 112 LRSLSCQRNYQHNSPVNTVVLHPNQTELISGD-Q------------SGNIRVWDLGENSCTHELIPEDD----------- 167 (311)
T ss_pred ccCcccchhccCCCCcceEEecCCcceEEeec-C------------CCcEEEEEccCCccccccCCCCC-----------
Confidence 744 55555544 6778889999988886433 3 248999999854 3333433322
Q ss_pred CCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCC-CCCceEE---eecccccccceecCCCceEEEE
Q 005240 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAE-GEKPEIL---HKLDLRFRSVSWCDDSLALVNE 316 (706)
Q Consensus 241 ~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~~~~l---~~~~~~~~~~~wspDg~~l~~~ 316 (706)
..+..++.-|||+. |+-+ .+++..|+|++-... -.+.+.+ ....+..-.-.+|||+++|+..
T Consensus 168 -~~i~sl~v~~dgsm-l~a~------------nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ 233 (311)
T KOG0315|consen 168 -TSIQSLTVMPDGSM-LAAA------------NNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATC 233 (311)
T ss_pred -cceeeEEEcCCCcE-EEEe------------cCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEee
Confidence 11446788899987 4422 234557788772100 0122223 2345666777899999999987
Q ss_pred eeccccceEEEEEcCCCC-CCCceeeecCcccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCC
Q 005240 317 TWYKTSQTRTWLVCPGSK-DVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIP 395 (706)
Q Consensus 317 ~~~~~~~~~l~~~d~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 395 (706)
+.++ ...|| +.++- +.+ +.| +..-..+ ..-.||.||+||+....+ .
T Consensus 234 ssdk--tv~iw--n~~~~~kle-~~l-~gh~rWv------Wdc~FS~dg~YlvTassd---------------------~ 280 (311)
T KOG0315|consen 234 SSDK--TVKIW--NTDDFFKLE-LVL-TGHQRWV------WDCAFSADGEYLVTASSD---------------------H 280 (311)
T ss_pred cCCc--eEEEE--ecCCceeeE-EEe-ecCCceE------EeeeeccCccEEEecCCC---------------------C
Confidence 6443 33444 44442 111 122 1111111 012368999988665311 1
Q ss_pred ceeeeecCCCceeeeecc
Q 005240 396 FLDLFDINTGSKERIWES 413 (706)
Q Consensus 396 ~l~~~d~~~g~~~~l~~~ 413 (706)
...+.+++.|+..+.+++
T Consensus 281 ~~rlW~~~~~k~v~qy~g 298 (311)
T KOG0315|consen 281 TARLWDLSAGKEVRQYQG 298 (311)
T ss_pred ceeecccccCceeeecCC
Confidence 344567777877666654
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.2e-09 Score=106.06 Aligned_cols=267 Identities=12% Similarity=0.114 Sum_probs=155.4
Q ss_pred CCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEec
Q 005240 27 YPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIP 106 (706)
Q Consensus 27 ~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~ 106 (706)
.+....++.+.|+-||..||+... ...+.+++..|+...-+..+.+. +-++.|+-+|.+|+....
T Consensus 232 ~~~nkdVT~L~Wn~~G~~LatG~~----------~G~~riw~~~G~l~~tl~~HkgP-----I~slKWnk~G~yilS~~v 296 (524)
T KOG0273|consen 232 VPSNKDVTSLDWNNDGTLLATGSE----------DGEARIWNKDGNLISTLGQHKGP-----IFSLKWNKKGTYILSGGV 296 (524)
T ss_pred CCccCCcceEEecCCCCeEEEeec----------CcEEEEEecCchhhhhhhccCCc-----eEEEEEcCCCCEEEeccC
Confidence 344557899999999999999753 35666667778877777666554 778999999998886543
Q ss_pred CCCCCC-CC-------CCCCCCCC--ceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCC-Cc-eecCCC
Q 005240 107 SSRRDP-PK-------KTMVPLGP--KIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TA-KDFGTP 174 (706)
Q Consensus 107 ~~~~~~-~~-------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g-~~-~~lt~~ 174 (706)
+..... .. .......+ .+.|..... +. .....+.|+++-+++ .| ..+...
T Consensus 297 D~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~---------F~---------ts~td~~i~V~kv~~~~P~~t~~GH 358 (524)
T KOG0273|consen 297 DGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDE---------FA---------TSSTDGCIHVCKVGEDRPVKTFIGH 358 (524)
T ss_pred CccEEEEeccCceEEEeeeeccCCccceEEecCce---------Ee---------ecCCCceEEEEEecCCCcceeeecc
Confidence 322110 00 00000000 011111000 00 011224566666644 33 333334
Q ss_pred -ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCC-eeEEcccCCCCCCCCcccCccCCCCcceeeecC
Q 005240 175 -AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK-LVRELCDLPPAEDIPVCYNSVREGMRSISWRAD 252 (706)
Q Consensus 175 -~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spd 252 (706)
+.+..+.|.|.|+.|+-.+.+ ..+.+|+.... ....|-.+. ..+..+.|||+
T Consensus 359 ~g~V~alk~n~tg~LLaS~SdD-------------~TlkiWs~~~~~~~~~l~~Hs-------------kei~t~~wsp~ 412 (524)
T KOG0273|consen 359 HGEVNALKWNPTGSLLASCSDD-------------GTLKIWSMGQSNSVHDLQAHS-------------KEIYTIKWSPT 412 (524)
T ss_pred cCceEEEEECCCCceEEEecCC-------------CeeEeeecCCCcchhhhhhhc-------------cceeeEeecCC
Confidence 789999999999988766554 37888886532 222222111 12457789988
Q ss_pred CCceEEEEEeccCCCCccccCccceeeeecCCCCCCCC-ceEEeecccccccceecCCCceEEEEeeccccceEEEEEcC
Q 005240 253 KPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEK-PEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCP 331 (706)
Q Consensus 253 g~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~ 331 (706)
|.- ..+...+.......-...+.+||+ ..+. +-.++.+...+++++|||||+++++.+-+ + .|.+.+.
T Consensus 413 g~v----~~n~~~~~~l~sas~dstV~lwdv---~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~d--g--~V~iws~ 481 (524)
T KOG0273|consen 413 GPV----TSNPNMNLMLASASFDSTVKLWDV---ESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLD--G--CVHIWST 481 (524)
T ss_pred CCc----cCCCcCCceEEEeecCCeEEEEEc---cCCceeEeeccCCCceEEEEecCCCcEEEecCCC--C--eeEeccc
Confidence 863 212222222222223346888888 4444 44567888999999999999999987522 2 3445554
Q ss_pred CCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEeee
Q 005240 332 GSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIK 372 (706)
Q Consensus 332 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 372 (706)
.++ +...-. ..+.+.|++.|+.+|.+|.....
T Consensus 482 ~~~--~l~~s~-------~~~~~Ifel~Wn~~G~kl~~~~s 513 (524)
T KOG0273|consen 482 KTG--KLVKSY-------QGTGGIFELCWNAAGDKLGACAS 513 (524)
T ss_pred cch--heeEee-------cCCCeEEEEEEcCCCCEEEEEec
Confidence 442 111111 11224578999999999887763
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=6.7e-09 Score=114.07 Aligned_cols=129 Identities=15% Similarity=0.153 Sum_probs=87.3
Q ss_pred CCeeeeecCC-CCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecC
Q 005240 19 GPEKEVHGYP-DGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNN 97 (706)
Q Consensus 19 g~~~~i~~~~-~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpD 97 (706)
+...++.+.. ....+.+|++||||+++||+....++. .++..+||+.+. +++.++++.+.. ...+.||||
T Consensus 337 ~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~--~d~~s~Lwv~~~-gg~~~~lt~g~~------~t~PsWspD 407 (591)
T PRK13616 337 QGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGA--PDPASSLWVGPL-GGVAVQVLEGHS------LTRPSWSLD 407 (591)
T ss_pred CCeeeCCCccccccCcccceECCCCCEEEEEEeecCCC--CCcceEEEEEeC-CCcceeeecCCC------CCCceECCC
Confidence 3444554332 123678999999999999999643211 145679999996 556688876542 678999999
Q ss_pred CcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCC-CceecCCCce
Q 005240 98 STLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TAKDFGTPAV 176 (706)
Q Consensus 98 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g-~~~~lt~~~~ 176 (706)
|+.|+|.++...-.. ... ....++||++++++ +.++ .....
T Consensus 408 G~~lw~v~dg~~~~~-------------v~~------------------------~~~~gql~~~~vd~ge~~~-~~~g~ 449 (591)
T PRK13616 408 ADAVWVVVDGNTVVR-------------VIR------------------------DPATGQLARTPVDASAVAS-RVPGP 449 (591)
T ss_pred CCceEEEecCcceEE-------------Eec------------------------cCCCceEEEEeccCchhhh-ccCCC
Confidence 999999864211000 000 00236899999965 6654 32356
Q ss_pred EeeeeeCCCCcEEEEEee
Q 005240 177 YTAVEPSPDQKYVLITSM 194 (706)
Q Consensus 177 ~~~~~~SpDG~~i~~~~~ 194 (706)
+..++|||||++|+|...
T Consensus 450 Issl~wSpDG~RiA~i~~ 467 (591)
T PRK13616 450 ISELQLSRDGVRAAMIIG 467 (591)
T ss_pred cCeEEECCCCCEEEEEEC
Confidence 889999999999999873
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.4e-08 Score=108.15 Aligned_cols=180 Identities=19% Similarity=0.233 Sum_probs=116.4
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCc---eeecccCCCccccccccceEEecCCcEEEEEecCC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE---AKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSS 108 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~---~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~ 108 (706)
.+....+||||+.++.... ++ .+.+.++.+++ .+.+..+ ...+..+.|||||++|+-.+.+
T Consensus 161 sv~~~~fs~~g~~l~~~~~--------~~--~i~~~~~~~~~~~~~~~l~~h-----~~~v~~~~fs~d~~~l~s~s~D- 224 (456)
T KOG0266|consen 161 SVTCVDFSPDGRALAAASS--------DG--LIRIWKLEGIKSNLLRELSGH-----TRGVSDVAFSPDGSYLLSGSDD- 224 (456)
T ss_pred ceEEEEEcCCCCeEEEccC--------CC--cEEEeecccccchhhcccccc-----ccceeeeEECCCCcEEEEecCC-
Confidence 5667899999999988753 33 34444444444 2222111 2247899999999977765421
Q ss_pred CCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CC--CceecCCC-ceEeeeeeCC
Q 005240 109 RRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG--TAKDFGTP-AVYTAVEPSP 184 (706)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g--~~~~lt~~-~~~~~~~~Sp 184 (706)
.+|.++++ +. ..+.+... ..+..++|+|
T Consensus 225 ------------------------------------------------~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p 256 (456)
T KOG0266|consen 225 ------------------------------------------------KTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSP 256 (456)
T ss_pred ------------------------------------------------ceEEEeeccCCCeEEEEecCCCCceEEEEecC
Confidence 56777777 43 34445444 7889999999
Q ss_pred CCcEEEEEeeccCcccccccccccceEEEEecCCCe-eEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEec
Q 005240 185 DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL-VRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQ 263 (706)
Q Consensus 185 DG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~ 263 (706)
+|+.|+..+.+ ..|.+|++.+++ .+.|..+. .++..++|++||.. |+-.
T Consensus 257 ~g~~i~Sgs~D-------------~tvriWd~~~~~~~~~l~~hs-------------~~is~~~f~~d~~~-l~s~--- 306 (456)
T KOG0266|consen 257 DGNLLVSGSDD-------------GTVRIWDVRTGECVRKLKGHS-------------DGISGLAFSPDGNL-LVSA--- 306 (456)
T ss_pred CCCEEEEecCC-------------CcEEEEeccCCeEEEeeeccC-------------CceEEEEECCCCCE-EEEc---
Confidence 99666544443 379999999654 44444443 23457799999986 4322
Q ss_pred cCCCCccccCccceeeeecCCCCCCCCc---eEEeeccc--ccccceecCCCceEEEEe
Q 005240 264 DRGDANVEVSPRDIIYTQPAEPAEGEKP---EILHKLDL--RFRSVSWCDDSLALVNET 317 (706)
Q Consensus 264 ~~~~~~~~~~~~~~l~~~d~~~~~~~~~---~~l~~~~~--~~~~~~wspDg~~l~~~~ 317 (706)
. ....|.+||+ .++.. +.+..... .+..+.|+|++++|+...
T Consensus 307 -s--------~d~~i~vwd~---~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~ 353 (456)
T KOG0266|consen 307 -S--------YDGTIRVWDL---ETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSAS 353 (456)
T ss_pred -C--------CCccEEEEEC---CCCceeeeecccCCCCCCceeEEEECCCCcEEEEec
Confidence 1 1235889998 66662 23433322 478889999999998765
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.8e-08 Score=102.06 Aligned_cols=302 Identities=11% Similarity=0.065 Sum_probs=153.0
Q ss_pred eeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhc
Q 005240 62 LRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNL 141 (706)
Q Consensus 62 ~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (706)
-.+|.+|.++++...+..... ......+.++|++++||...... .
T Consensus 15 I~~~~~d~~~g~l~~~~~~~~---~~~Ps~l~~~~~~~~LY~~~e~~-~------------------------------- 59 (345)
T PF10282_consen 15 IYVFRFDEETGTLTLVQTVAE---GENPSWLAVSPDGRRLYVVNEGS-G------------------------------- 59 (345)
T ss_dssp EEEEEEETTTTEEEEEEEEEE---SSSECCEEE-TTSSEEEEEETTS-S-------------------------------
T ss_pred EEEEEEcCCCCCceEeeeecC---CCCCceEEEEeCCCEEEEEEccc-c-------------------------------
Confidence 344455557787765532111 11256788999999988875321 0
Q ss_pred cCCchhhhhhhhcccceEEEEcc--C-CCceecC----CCceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEE
Q 005240 142 LKDEYDESLFDYYTTAQLVLGSL--D-GTAKDFG----TPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVW 214 (706)
Q Consensus 142 ~~~~~d~~~~~~~~~~~l~~~~l--~-g~~~~lt----~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~ 214 (706)
..+.|..+.+ + |+.+.+. .+.....++++|||++|+...... ..+.++
T Consensus 60 -------------~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~------------g~v~v~ 114 (345)
T PF10282_consen 60 -------------DSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGG------------GSVSVF 114 (345)
T ss_dssp -------------TTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTT------------TEEEEE
T ss_pred -------------CCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccC------------CeEEEE
Confidence 1134444444 4 5554442 234566789999999997655432 467888
Q ss_pred ecCC-CeeEEc---ccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCC
Q 005240 215 TTDG-KLVREL---CDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEK 290 (706)
Q Consensus 215 ~~~~-~~~~~l---~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~ 290 (706)
+++. +.+... ....+. .|............+.++|||+. ++ +.+. +. +.|++++.+. .+++
T Consensus 115 ~l~~~g~l~~~~~~~~~~g~--g~~~~rq~~~h~H~v~~~pdg~~-v~-v~dl--G~--------D~v~~~~~~~-~~~~ 179 (345)
T PF10282_consen 115 PLDDDGSLGEVVQTVRHEGS--GPNPDRQEGPHPHQVVFSPDGRF-VY-VPDL--GA--------DRVYVYDIDD-DTGK 179 (345)
T ss_dssp EECTTSEEEEEEEEEESEEE--ESSTTTTSSTCEEEEEE-TTSSE-EE-EEET--TT--------TEEEEEEE-T-TS-T
T ss_pred EccCCcccceeeeecccCCC--CCcccccccccceeEEECCCCCE-EE-EEec--CC--------CEEEEEEEeC-CCce
Confidence 8874 333332 111110 00000000012336789999997 54 4332 22 2366666621 2333
Q ss_pred ceEEe----ecccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCcc--cccccCCCCCceEeccCC
Q 005240 291 PEILH----KLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVF--ENVYSDPGSPMMTRTSTG 364 (706)
Q Consensus 291 ~~~l~----~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~s~dg 364 (706)
+.... ........+.|+|||++++... +.+....++.++..+ +....+..... ...........+..||||
T Consensus 180 l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~-e~s~~v~v~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg 256 (345)
T PF10282_consen 180 LTPVDSIKVPPGSGPRHLAFSPDGKYAYVVN-ELSNTVSVFDYDPSD--GSLTEIQTISTLPEGFTGENAPAEIAISPDG 256 (345)
T ss_dssp EEEEEEEECSTTSSEEEEEE-TTSSEEEEEE-TTTTEEEEEEEETTT--TEEEEEEEEESCETTSCSSSSEEEEEE-TTS
T ss_pred EEEeeccccccCCCCcEEEEcCCcCEEEEec-CCCCcEEEEeecccC--CceeEEEEeeeccccccccCCceeEEEecCC
Confidence 43321 2233456789999999888764 443444455555334 33333311111 010000112347789999
Q ss_pred CEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeeecccchhhhhhhhhhccCCCceecccCCCEEEEE
Q 005240 365 TNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTS 444 (706)
Q Consensus 365 ~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~ 444 (706)
++|+++... .+...++.+|.++|+.+.+-...-. ...+ +.+.++|||++|+.+
T Consensus 257 ~~lyvsnr~------------------~~sI~vf~~d~~~g~l~~~~~~~~~--G~~P-------r~~~~s~~g~~l~Va 309 (345)
T PF10282_consen 257 RFLYVSNRG------------------SNSISVFDLDPATGTLTLVQTVPTG--GKFP-------RHFAFSPDGRYLYVA 309 (345)
T ss_dssp SEEEEEECT------------------TTEEEEEEECTTTTTEEEEEEEEES--SSSE-------EEEEE-TTSSEEEEE
T ss_pred CEEEEEecc------------------CCEEEEEEEecCCCceEEEEEEeCC--CCCc-------cEEEEeCCCCEEEEE
Confidence 999887632 1222344555566776555322110 0001 246889999877765
Q ss_pred EecCCCCcEEEEEECCCCceeEeec
Q 005240 445 KESKTEITQYHILSWPLKKSSQITN 469 (706)
Q Consensus 445 ~~~~~~p~~v~~~~~~~~~~~~lt~ 469 (706)
.. ...--.++.+|.++|+.+.+..
T Consensus 310 ~~-~s~~v~vf~~d~~tG~l~~~~~ 333 (345)
T PF10282_consen 310 NQ-DSNTVSVFDIDPDTGKLTPVGS 333 (345)
T ss_dssp ET-TTTEEEEEEEETTTTEEEEEEE
T ss_pred ec-CCCeEEEEEEeCCCCcEEEecc
Confidence 43 3344557777888888777653
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=8.3e-08 Score=90.62 Aligned_cols=228 Identities=12% Similarity=0.126 Sum_probs=143.4
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~ 111 (706)
.+....||+|+++|+-++. + ..|.++|.-+.........+.. -+-..++||.|..+++..-+
T Consensus 57 Ki~~~~ws~Dsr~ivSaSq--------D--GklIvWDs~TtnK~haipl~s~----WVMtCA~sPSg~~VAcGGLd---- 118 (343)
T KOG0286|consen 57 KIYAMDWSTDSRRIVSASQ--------D--GKLIVWDSFTTNKVHAIPLPSS----WVMTCAYSPSGNFVACGGLD---- 118 (343)
T ss_pred ceeeeEecCCcCeEEeecc--------C--CeEEEEEcccccceeEEecCce----eEEEEEECCCCCeEEecCcC----
Confidence 5889999999999988764 2 5788889876544443322322 25578999999999986321
Q ss_pred CCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc---CC--C-ceecCCC-ceEeeeeeCC
Q 005240 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL---DG--T-AKDFGTP-AVYTAVEPSP 184 (706)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l---~g--~-~~~lt~~-~~~~~~~~Sp 184 (706)
+...||-+.. +| . .+.|... ++++...|-+
T Consensus 119 -------------------------------------------N~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d 155 (343)
T KOG0286|consen 119 -------------------------------------------NKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD 155 (343)
T ss_pred -------------------------------------------ceeEEEecccccccccceeeeeecCccceeEEEEEcC
Confidence 1245555543 23 1 2334444 7888999998
Q ss_pred CCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeec-CCCceEEEEEec
Q 005240 185 DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRA-DKPSTLYWVEAQ 263 (706)
Q Consensus 185 DG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~sp-dg~~~l~~~~~~ 263 (706)
|+..| -.+.+ ....+||+++++..+...+...+ +-.++.+| +++. |++
T Consensus 156 D~~il-T~SGD-------------~TCalWDie~g~~~~~f~GH~gD------------V~slsl~p~~~nt---FvS-- 204 (343)
T KOG0286|consen 156 DNHIL-TGSGD-------------MTCALWDIETGQQTQVFHGHTGD------------VMSLSLSPSDGNT---FVS-- 204 (343)
T ss_pred CCceE-ecCCC-------------ceEEEEEcccceEEEEecCCccc------------EEEEecCCCCCCe---EEe--
Confidence 87544 33332 47899999977665554443222 33678888 7775 342
Q ss_pred cCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeec
Q 005240 264 DRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFD 343 (706)
Q Consensus 264 ~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~ 343 (706)
.+-+. .-++||+. ++...+..+.+...+..+.|.|+|-.|+..+++ +.-++|-+-.+. ...++.
T Consensus 205 g~cD~--------~aklWD~R--~~~c~qtF~ghesDINsv~ffP~G~afatGSDD--~tcRlyDlRaD~----~~a~ys 268 (343)
T KOG0286|consen 205 GGCDK--------SAKLWDVR--SGQCVQTFEGHESDINSVRFFPSGDAFATGSDD--ATCRLYDLRADQ----ELAVYS 268 (343)
T ss_pred ccccc--------ceeeeecc--CcceeEeecccccccceEEEccCCCeeeecCCC--ceeEEEeecCCc----EEeeec
Confidence 11121 35678884 455556667788899999999999998877632 445555554332 233443
Q ss_pred CcccccccCCCCCceEeccCCCEEEEee
Q 005240 344 RVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 344 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 371 (706)
.+.. .-+...+.||..|+.|+...
T Consensus 269 ~~~~----~~gitSv~FS~SGRlLfagy 292 (343)
T KOG0286|consen 269 HDSI----ICGITSVAFSKSGRLLFAGY 292 (343)
T ss_pred cCcc----cCCceeEEEcccccEEEeee
Confidence 2211 11445678899999887754
|
|
| >PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.3e-09 Score=104.07 Aligned_cols=109 Identities=29% Similarity=0.326 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCCCCC-----------CCcc----
Q 005240 581 QLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTL-----------TPFG---- 645 (706)
Q Consensus 581 ~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d~~~-----------~~~~---- 645 (706)
....-+...++...+.+ ++++||.++|+|.||.||+.++.++|..|.++++++|...... +|..
T Consensus 85 ~s~~~l~~li~~~~~~~-i~~~ri~l~GFSQGa~~al~~~l~~p~~~~gvv~lsG~~~~~~~~~~~~~~~~~~pi~~~hG 163 (216)
T PF02230_consen 85 ESAERLDELIDEEVAYG-IDPSRIFLGGFSQGAAMALYLALRYPEPLAGVVALSGYLPPESELEDRPEALAKTPILIIHG 163 (216)
T ss_dssp HHHHHHHHHHHHHHHTT---GGGEEEEEETHHHHHHHHHHHCTSSTSSEEEEES---TTGCCCHCCHCCCCTS-EEEEEE
T ss_pred HHHHHHHHHHHHHHHcC-CChhheehhhhhhHHHHHHHHHHHcCcCcCEEEEeeccccccccccccccccCCCcEEEEec
Confidence 33444555555555544 8999999999999999999999999999999999998753211 1211
Q ss_pred -------c-hHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHh
Q 005240 646 -------F-QAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYC 695 (706)
Q Consensus 646 -------~-~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~~~~l 695 (706)
+ ..++.++.|++.+.++++..|||.+|.+. .+.+..+.+||++++
T Consensus 164 ~~D~vvp~~~~~~~~~~L~~~~~~v~~~~~~g~gH~i~-----~~~~~~~~~~l~~~~ 216 (216)
T PF02230_consen 164 DEDPVVPFEWAEKTAEFLKAAGANVEFHEYPGGGHEIS-----PEELRDLREFLEKHI 216 (216)
T ss_dssp TT-SSSTHHHHHHHHHHHHCTT-GEEEEEETT-SSS-------HHHHHHHHHHHHHH-
T ss_pred CCCCcccHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCC-----HHHHHHHHHHHhhhC
Confidence 0 23489999999999999999999999886 367888999999864
|
; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A. |
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.06 E-value=5.5e-09 Score=102.68 Aligned_cols=225 Identities=15% Similarity=0.231 Sum_probs=133.9
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~ 111 (706)
.+....||||.++|+.-.. ...++++|+.+|+.+...... ....+.+.+|-|||..++..+++
T Consensus 271 ~V~yi~wSPDdryLlaCg~----------~e~~~lwDv~tgd~~~~y~~~---~~~S~~sc~W~pDg~~~V~Gs~d---- 333 (519)
T KOG0293|consen 271 PVSYIMWSPDDRYLLACGF----------DEVLSLWDVDTGDLRHLYPSG---LGFSVSSCAWCPDGFRFVTGSPD---- 333 (519)
T ss_pred ceEEEEECCCCCeEEecCc----------hHheeeccCCcchhhhhcccC---cCCCcceeEEccCCceeEecCCC----
Confidence 6889999999999976432 234899999999988775332 11236789999999998776432
Q ss_pred CCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCCCc-eecC--CCceEeeeeeCCCCcE
Q 005240 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTA-KDFG--TPAVYTAVEPSPDQKY 188 (706)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g~~-~~lt--~~~~~~~~~~SpDG~~ 188 (706)
.+++.++++|+. .... ....+..++.++||++
T Consensus 334 ---------------------------------------------r~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~ 368 (519)
T KOG0293|consen 334 ---------------------------------------------RTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKY 368 (519)
T ss_pred ---------------------------------------------CcEEEecCCcchhhcccccccceeEEEEEcCCCcE
Confidence 688999998833 1111 1146789999999999
Q ss_pred EEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCC
Q 005240 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDA 268 (706)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~ 268 (706)
++.+... ..|.+++.+....+.+.... .+...+..|.||+. +.+ +..
T Consensus 369 vl~v~~d-------------~~i~l~~~e~~~dr~lise~-------------~~its~~iS~d~k~--~Lv-nL~---- 415 (519)
T KOG0293|consen 369 VLLVTVD-------------KKIRLYNREARVDRGLISEE-------------QPITSFSISKDGKL--ALV-NLQ---- 415 (519)
T ss_pred EEEEecc-------------cceeeechhhhhhhcccccc-------------CceeEEEEcCCCcE--EEE-Ecc----
Confidence 9876643 37888888765544333322 22447789999985 323 111
Q ss_pred ccccCccceeeeecCCCCCCCCceEEeecccc--cccceecCCC-ceEEEEeeccccceEEEEEcCCCCCCCceeeecCc
Q 005240 269 NVEVSPRDIIYTQPAEPAEGEKPEILHKLDLR--FRSVSWCDDS-LALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRV 345 (706)
Q Consensus 269 ~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~--~~~~~wspDg-~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~ 345 (706)
...+++||++ +...+++....... +-.-.|..-. +.|+..+ ...++|+++..++ ++.....+.
T Consensus 416 ------~qei~LWDl~--e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGS----ED~kvyIWhr~sg--kll~~LsGH 481 (519)
T KOG0293|consen 416 ------DQEIHLWDLE--ENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGS----EDSKVYIWHRISG--KLLAVLSGH 481 (519)
T ss_pred ------cCeeEEeecc--hhhHHHHhhcccccceEEEeccCCCCcceEEecC----CCceEEEEEccCC--ceeEeecCC
Confidence 1247888882 21111222221111 1111233222 3333332 3357999998884 444443333
Q ss_pred ccccccCCCCCceEeccCCCEEEEee
Q 005240 346 FENVYSDPGSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 346 ~~~~~~~~~~~~~~~s~dg~~l~~~~ 371 (706)
...+ .-++|+|...+..+++
T Consensus 482 s~~v------NcVswNP~~p~m~ASa 501 (519)
T KOG0293|consen 482 SKTV------NCVSWNPADPEMFASA 501 (519)
T ss_pred ccee------eEEecCCCCHHHhhcc
Confidence 2222 1266777776655554
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.05 E-value=8.2e-09 Score=97.67 Aligned_cols=122 Identities=16% Similarity=0.156 Sum_probs=81.2
Q ss_pred ccceEEEEccCC-CceecC--CCceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCC
Q 005240 155 TTAQLVLGSLDG-TAKDFG--TPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAE 231 (706)
Q Consensus 155 ~~~~l~~~~l~g-~~~~lt--~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~ 231 (706)
+...||.++..+ ....+. ..+.+..++|||+|+++++..... +..+.+|++++..+..+....
T Consensus 37 ~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~-----------~~~v~lyd~~~~~i~~~~~~~--- 102 (194)
T PF08662_consen 37 GEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSM-----------PAKVTLYDVKGKKIFSFGTQP--- 102 (194)
T ss_pred eeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccC-----------CcccEEEcCcccEeEeecCCC---
Confidence 457899998854 444443 335699999999999998876543 247899999866665553221
Q ss_pred CCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEee-cccccccceecCCC
Q 005240 232 DIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK-LDLRFRSVSWCDDS 310 (706)
Q Consensus 232 ~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~-~~~~~~~~~wspDg 310 (706)
...+.|||+|+. |+... ..+ ..+.|.+||+ . +.+.+.. .......+.|||||
T Consensus 103 ------------~n~i~wsP~G~~-l~~~g-~~n--------~~G~l~~wd~---~--~~~~i~~~~~~~~t~~~WsPdG 155 (194)
T PF08662_consen 103 ------------RNTISWSPDGRF-LVLAG-FGN--------LNGDLEFWDV---R--KKKKISTFEHSDATDVEWSPDG 155 (194)
T ss_pred ------------ceEEEECCCCCE-EEEEE-ccC--------CCcEEEEEEC---C--CCEEeeccccCcEEEEEEcCCC
Confidence 226799999997 55432 111 1134778888 3 3444432 23456788999999
Q ss_pred ceEEEEe
Q 005240 311 LALVNET 317 (706)
Q Consensus 311 ~~l~~~~ 317 (706)
++|+...
T Consensus 156 r~~~ta~ 162 (194)
T PF08662_consen 156 RYLATAT 162 (194)
T ss_pred CEEEEEE
Confidence 9999765
|
|
| >PF00756 Esterase: Putative esterase; InterPro: IPR000801 This family contains several seemingly unrelated proteins, including human esterase D; mycobacterial antigen 85, which is responsible for the high affinity of mycobacteria to fibronectin; Corynebacterium glutamicum major secreted protein PS1; and hypothetical proteins from Escherichia coli, yeast, mycobacteria and Haemophilus influenzae | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.5e-10 Score=115.63 Aligned_cols=131 Identities=25% Similarity=0.294 Sum_probs=79.9
Q ss_pred CCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCC----eE-EEEcCCCC
Q 005240 491 DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARR----FA-VLAGPSIP 565 (706)
Q Consensus 491 dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G----~~-v~~~~~~~ 565 (706)
-|.++..++|+|++|++.+ ++|+|++.||- ..|..... .......+++.| .+ |+.++...
T Consensus 4 Lg~~~~~~VylP~~y~~~~--~~PvlylldG~------------~~~~~~~~-~~~~~~~~~~~~~~~~~iiV~i~~~~~ 68 (251)
T PF00756_consen 4 LGRDRRVWVYLPPGYDPSK--PYPVLYLLDGQ------------SGWFRNGN-AQEALDRLIAEGKIPPMIIVVIPNGDN 68 (251)
T ss_dssp TTEEEEEEEEECTTGGTTT--TEEEEEEESHT------------THHHHHHH-HHHHHHHHHHHHTSEEEEEEEEESSST
T ss_pred cCCeEEEEEEECCCCCCCC--CCEEEEEccCC------------ccccccch-HHHHHHHHHHhCCCCceEEEEEecccc
Confidence 4678999999999985444 69999999992 01110000 011222334443 33 33333221
Q ss_pred cCCCCC---------C----CCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEe
Q 005240 566 IIGEGD---------K----LPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIA 632 (706)
Q Consensus 566 ~~g~g~---------~----~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~ 632 (706)
...++. . .....+..-+.+ +.+.++.++..+++.+.+|+|+||||+.|++++.++|+.|.++++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---el~p~i~~~~~~~~~~~~i~G~S~GG~~Al~~~l~~Pd~F~~~~~ 145 (251)
T PF00756_consen 69 SRFYTSWYLPAGSSRRADDSGGGDAYETFLTE---ELIPYIEANYRTDPDRRAIAGHSMGGYGALYLALRHPDLFGAVIA 145 (251)
T ss_dssp SSTTSBTTSSBCTTCBCTSTTTHHHHHHHHHT---HHHHHHHHHSSEEECCEEEEEETHHHHHHHHHHHHSTTTESEEEE
T ss_pred cccccccccccccccccccCCCCcccceehhc---cchhHHHHhcccccceeEEeccCCCcHHHHHHHHhCccccccccc
Confidence 111110 0 001122222233 445566676667777799999999999999999999999999999
Q ss_pred ccCCCCC
Q 005240 633 RSGSYNK 639 (706)
Q Consensus 633 ~~~~~d~ 639 (706)
++|.++.
T Consensus 146 ~S~~~~~ 152 (251)
T PF00756_consen 146 FSGALDP 152 (251)
T ss_dssp ESEESET
T ss_pred cCccccc
Confidence 9987543
|
; PDB: 3LS2_A 1VA5_B 1DQZ_B 3HRH_A 1DQY_A 2GZR_A 2GZS_A 3GFF_A 1R88_A 3E4D_D .... |
| >COG2382 Fes Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.3e-09 Score=102.52 Aligned_cols=189 Identities=20% Similarity=0.174 Sum_probs=118.6
Q ss_pred ceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCC----e
Q 005240 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARR----F 556 (706)
Q Consensus 481 ~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G----~ 556 (706)
..+.+.+.+.-..+...++|+|+++.+.. +||+++..||-- |..+... ......|++.| -
T Consensus 68 ~~~~~~~~~~l~~~~~~vv~lppgy~~~~--k~pvl~~~DG~~-------------~~~~g~i-~~~~dsli~~g~i~pa 131 (299)
T COG2382 68 PVEEILYSSELLSERRRVVYLPPGYNPLE--KYPVLYLQDGQD-------------WFRSGRI-PRILDSLIAAGEIPPA 131 (299)
T ss_pred chhhhhhhhhhccceeEEEEeCCCCCccc--cccEEEEeccHH-------------HHhcCCh-HHHHHHHHHcCCCCCc
Confidence 44555565554467888999999987655 599999999841 1111111 12233455555 3
Q ss_pred EEEEcCCCCcCCCCCCCC-chhhHHHHHHHHHHHHHHHHHcCC--CCCCcEEEEEechHHHHHHHHHHhCCCceeEEEec
Q 005240 557 AVLAGPSIPIIGEGDKLP-NDRFVEQLVSSAEAAVEEVVRRGV--ADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIAR 633 (706)
Q Consensus 557 ~v~~~~~~~~~g~g~~~~-~~~~~~~~~~D~~~~~~~l~~~~~--id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~ 633 (706)
+++.+++-.-.-+.+++. +..+......++ +=|+.+... -++++.+++|.|+||..+++++.++|++|.++++.
T Consensus 132 i~vgid~~d~~~R~~~~~~n~~~~~~L~~eL---lP~v~~~yp~~~~a~~r~L~G~SlGG~vsL~agl~~Pe~FG~V~s~ 208 (299)
T COG2382 132 ILVGIDYIDVKKRREELHCNEAYWRFLAQEL---LPYVEERYPTSADADGRVLAGDSLGGLVSLYAGLRHPERFGHVLSQ 208 (299)
T ss_pred eEEecCCCCHHHHHHHhcccHHHHHHHHHHh---hhhhhccCcccccCCCcEEeccccccHHHHHHHhcCchhhceeecc
Confidence 444433322111111222 122323333322 334444422 46788999999999999999999999999999999
Q ss_pred cCCCCCCCCC-------cc-------------------------c-hHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccH
Q 005240 634 SGSYNKTLTP-------FG-------------------------F-QAERFFDALKGHGALSRLVLLPFEHHVYAARENV 680 (706)
Q Consensus 634 ~~~~d~~~~~-------~~-------------------------~-~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~ 680 (706)
+|.+++.... .. + ...++++.|+..++++.+..|+| ||.+.
T Consensus 209 Sps~~~~~~~~~~~~~~~~~l~~~~a~~~~~~~~l~~g~~~~~~~~pNr~L~~~L~~~g~~~~yre~~G-gHdw~----- 282 (299)
T COG2382 209 SGSFWWTPLDTQPQGEVAESLKILHAIGTDERIVLTTGGEEGDFLRPNRALAAQLEKKGIPYYYREYPG-GHDWA----- 282 (299)
T ss_pred CCccccCccccccccchhhhhhhhhccCccceEEeecCCccccccchhHHHHHHHHhcCCcceeeecCC-CCchh-----
Confidence 9988765210 00 0 12299999999999999999999 99764
Q ss_pred HHHHHHHHHHHHHHh
Q 005240 681 MHVIWETDRWLQKYC 695 (706)
Q Consensus 681 ~~~~~~~~~f~~~~l 695 (706)
.+...+.++|...+
T Consensus 283 -~Wr~~l~~~L~~l~ 296 (299)
T COG2382 283 -WWRPALAEGLQLLL 296 (299)
T ss_pred -HhHHHHHHHHHHhh
Confidence 34445555555543
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.3e-08 Score=103.21 Aligned_cols=249 Identities=14% Similarity=0.195 Sum_probs=157.4
Q ss_pred cceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCcc
Q 005240 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~ 84 (706)
..||+++... |+.+++..+- ...++.+.|+|+|+.||... ....+.++|.+..+..+-..+.+
T Consensus 197 ~~vylW~~~s----~~v~~l~~~~-~~~vtSv~ws~~G~~LavG~----------~~g~v~iwD~~~~k~~~~~~~~h-- 259 (484)
T KOG0305|consen 197 QSVYLWSASS----GSVTELCSFG-EELVTSVKWSPDGSHLAVGT----------SDGTVQIWDVKEQKKTRTLRGSH-- 259 (484)
T ss_pred ceEEEEecCC----CceEEeEecC-CCceEEEEECCCCCEEEEee----------cCCeEEEEehhhccccccccCCc--
Confidence 4689999988 8888887554 44699999999999999864 33567777876654333322211
Q ss_pred ccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc
Q 005240 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (706)
Q Consensus 85 ~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l 164 (706)
...+..++|. +..+...+. ...|...|+
T Consensus 260 -~~rvg~laW~--~~~lssGsr-------------------------------------------------~~~I~~~dv 287 (484)
T KOG0305|consen 260 -ASRVGSLAWN--SSVLSSGSR-------------------------------------------------DGKILNHDV 287 (484)
T ss_pred -CceeEEEecc--CceEEEecC-------------------------------------------------CCcEEEEEE
Confidence 1137788997 444444321 133444454
Q ss_pred -CC--CceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCC-eeEEcccCCCCCCCCcccCc
Q 005240 165 -DG--TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK-LVRELCDLPPAEDIPVCYNS 239 (706)
Q Consensus 165 -~g--~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~~~~~p~~~~~ 239 (706)
.. ....+... ..+..++|++||++++-..++ +.+.+||.... ....++.+..+
T Consensus 288 R~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnD-------------N~~~Iwd~~~~~p~~~~~~H~aA--------- 345 (484)
T KOG0305|consen 288 RISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGND-------------NVVFIWDGLSPEPKFTFTEHTAA--------- 345 (484)
T ss_pred ecchhhhhhhhcccceeeeeEECCCCCeeccCCCc-------------cceEeccCCCccccEEEecccee---------
Confidence 22 12223333 688899999999999744433 57999998533 33445444433
Q ss_pred cCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeec
Q 005240 240 VREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWY 319 (706)
Q Consensus 240 ~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~ 319 (706)
+..++|+|-.+..|+ + .+|.. ...|..||. .+++.........++.++.|++..+.|+.+...
T Consensus 346 ----VKA~awcP~q~~lLA-s---GGGs~------D~~i~fwn~---~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~ 408 (484)
T KOG0305|consen 346 ----VKALAWCPWQSGLLA-T---GGGSA------DRCIKFWNT---NTGARIDSVDTGSQVCSLIWSKKYKELLSTHGY 408 (484)
T ss_pred ----eeEeeeCCCccCceE-E---cCCCc------ccEEEEEEc---CCCcEecccccCCceeeEEEcCCCCEEEEecCC
Confidence 568899999888443 2 22222 124778888 566655555667889999999999999987644
Q ss_pred cccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEee
Q 005240 320 KTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 320 ~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 371 (706)
......||.+..-. ....+... ...+..+++||||..|+..+
T Consensus 409 s~n~i~lw~~ps~~---~~~~l~gH-------~~RVl~la~SPdg~~i~t~a 450 (484)
T KOG0305|consen 409 SENQITLWKYPSMK---LVAELLGH-------TSRVLYLALSPDGETIVTGA 450 (484)
T ss_pred CCCcEEEEeccccc---eeeeecCC-------cceeEEEEECCCCCEEEEec
Confidence 44556777775321 11122111 11233478999999998776
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.4e-07 Score=93.37 Aligned_cols=93 Identities=14% Similarity=-0.058 Sum_probs=56.0
Q ss_pred cceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceee-cccCCCc
Q 005240 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKP-LFESPDI 83 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~-lt~~~~~ 83 (706)
+.|++.|.+. ++ .+..++.+..... .+||||+.|+-+...-.....+.....|-++|+++.+... |.-.+..
T Consensus 27 ~~v~ViD~~~----~~--v~g~i~~G~~P~~-~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p 99 (352)
T TIGR02658 27 TQVYTIDGEA----GR--VLGMTDGGFLPNP-VVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGP 99 (352)
T ss_pred ceEEEEECCC----CE--EEEEEEccCCCce-eECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCc
Confidence 6788888855 33 3334567765665 4999999996655411112223455778999999876543 3211110
Q ss_pred c--ccccccceEEecCCcEEEEE
Q 005240 84 C--LNAVFGSFVWVNNSTLLIFT 104 (706)
Q Consensus 84 ~--~~~~~~~~~wSpDg~~l~~~ 104 (706)
- .......++.||||++|++.
T Consensus 100 ~~~~~~~~~~~~ls~dgk~l~V~ 122 (352)
T TIGR02658 100 RFLVGTYPWMTSLTPDNKTLLFY 122 (352)
T ss_pred hhhccCccceEEECCCCCEEEEe
Confidence 0 00112378999999988864
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >TIGR01607 PST-A Plasmodium subtelomeric family (PST-A) | Back alignment and domain information |
|---|
Probab=99.03 E-value=8.7e-09 Score=106.83 Aligned_cols=136 Identities=13% Similarity=0.075 Sum_probs=86.0
Q ss_pred EEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCccc--C-------------CCCCcCCCCchHHHHH
Q 005240 487 YQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVR--G-------------SPNEFSGMTPTSSLIF 551 (706)
Q Consensus 487 ~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~--~-------------~~~~~~~~~~~~~~~l 551 (706)
+.+.||..|..+.+.|++ |..+|+++||=. +|..... . ....+..+...++..|
T Consensus 2 ~~~~~g~~l~~~~~~~~~-------~kg~v~i~HG~~----eh~~~~~~~~~~~~~~~~~~~~~~~~ry~~y~~~~~~~l 70 (332)
T TIGR01607 2 FRNKDGLLLKTYSWIVKN-------AIGIIVLIHGLK----SHLRLQFLKINAKIVNNDRAVLIDTDNYYIYKDSWIENF 70 (332)
T ss_pred ccCCCCCeEEEeeeeccC-------CeEEEEEECCCc----hhhhhhhhhcCcccCCCCeeEEEcCCcceEeeHHHHHHH
Confidence 456789999999998853 247999999942 2221000 0 0000000001467889
Q ss_pred HHCCeEEEEcCCCCcCCCCCCCCc------hhhHHHHHHHHHHHHHHHHHc------------------CCCCCCcEEEE
Q 005240 552 LARRFAVLAGPSIPIIGEGDKLPN------DRFVEQLVSSAEAAVEEVVRR------------------GVADPSRIAVG 607 (706)
Q Consensus 552 ~~~G~~v~~~~~~~~~g~g~~~~~------~~~~~~~~~D~~~~~~~l~~~------------------~~id~~~i~i~ 607 (706)
+++||.|+..+-+ |+|.+... -...+..++|+...++.+.++ .+-...++.|+
T Consensus 71 ~~~G~~V~~~D~r---GHG~S~~~~~~~g~~~~~~~~v~Dl~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~ 147 (332)
T TIGR01607 71 NKNGYSVYGLDLQ---GHGESDGLQNLRGHINCFDDLVYDVIQYMNRINDSIILENETKSDDESYDIVNTKENRLPMYII 147 (332)
T ss_pred HHCCCcEEEeccc---ccCCCccccccccchhhHHHHHHHHHHHHHHhhhhhccccccccccccccccccccCCCceeEe
Confidence 9999999985554 44443211 123567788898888887652 11113579999
Q ss_pred EechHHHHHHHHHHhCCC--------ceeEEEeccCC
Q 005240 608 GHSYGAFMTAHLLAHAPH--------LFCCGIARSGS 636 (706)
Q Consensus 608 G~S~GG~~a~~~~~~~p~--------~~~a~v~~~~~ 636 (706)
||||||.+++.++.+.++ .++++|+.+|.
T Consensus 148 GhSmGg~i~~~~~~~~~~~~~~~~~~~i~g~i~~s~~ 184 (332)
T TIGR01607 148 GLSMGGNIALRLLELLGKSNENNDKLNIKGCISLSGM 184 (332)
T ss_pred eccCccHHHHHHHHHhccccccccccccceEEEeccc
Confidence 999999999988865432 57888877765
|
These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii. |
| >PLN02872 triacylglycerol lipase | Back alignment and domain information |
|---|
Probab=99.03 E-value=8.1e-09 Score=108.37 Aligned_cols=144 Identities=16% Similarity=0.034 Sum_probs=92.4
Q ss_pred CCceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEE
Q 005240 479 SLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAV 558 (706)
Q Consensus 479 ~~~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v 558 (706)
....|+..+++.||..+....+.+..-..+ ..+.|.||++||.... ...|.... .....+..|+++||.|
T Consensus 41 gy~~e~h~v~T~DGy~L~l~ri~~~~~~~~-~~~~~~Vll~HGl~~s--------s~~w~~~~-~~~sla~~La~~GydV 110 (395)
T PLN02872 41 GYSCTEHTIQTKDGYLLALQRVSSRNPRLG-SQRGPPVLLQHGLFMA--------GDAWFLNS-PEQSLGFILADHGFDV 110 (395)
T ss_pred CCCceEEEEECCCCcEEEEEEcCCCCCCCC-CCCCCeEEEeCccccc--------ccceeecC-cccchHHHHHhCCCCc
Confidence 568899999999998888877744321111 1124678899996432 12221111 1123455688899999
Q ss_pred EEcCCCCcCC-CCCCC--------CchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCC---c
Q 005240 559 LAGPSIPIIG-EGDKL--------PNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH---L 626 (706)
Q Consensus 559 ~~~~~~~~~g-~g~~~--------~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~---~ 626 (706)
+.+|.||... +|... ....+-+....|+.++++++.+.. .+++.++|||+||.+++.++ ..|+ +
T Consensus 111 ~l~n~RG~~~s~gh~~~~~~~~~fw~~s~~e~a~~Dl~a~id~i~~~~---~~~v~~VGhS~Gg~~~~~~~-~~p~~~~~ 186 (395)
T PLN02872 111 WVGNVRGTRWSYGHVTLSEKDKEFWDWSWQELALYDLAEMIHYVYSIT---NSKIFIVGHSQGTIMSLAAL-TQPNVVEM 186 (395)
T ss_pred ccccccccccccCCCCCCccchhccCCcHHHHHHHHHHHHHHHHHhcc---CCceEEEEECHHHHHHHHHh-hChHHHHH
Confidence 9988876531 22111 112233444589999999998652 36899999999999998555 4566 4
Q ss_pred eeEEEeccCC
Q 005240 627 FCCGIARSGS 636 (706)
Q Consensus 627 ~~a~v~~~~~ 636 (706)
++++++.+|+
T Consensus 187 v~~~~~l~P~ 196 (395)
T PLN02872 187 VEAAALLCPI 196 (395)
T ss_pred HHHHHHhcch
Confidence 6666666665
|
|
| >cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.8e-09 Score=119.15 Aligned_cols=132 Identities=18% Similarity=0.189 Sum_probs=93.8
Q ss_pred ccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHH-CC-eEEEEcCCC-C
Q 005240 489 RKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA-RR-FAVLAGPSI-P 565 (706)
Q Consensus 489 ~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~G-~~v~~~~~~-~ 565 (706)
++|. +..-++.|....+.+ ++|+||++|||++..|+. ... ....|++ .+ ++|+.+++| +
T Consensus 75 sEdc--l~l~i~~p~~~~~~~--~~pv~v~ihGG~~~~g~~--------~~~------~~~~~~~~~~~~~vv~~~yRlg 136 (493)
T cd00312 75 SEDC--LYLNVYTPKNTKPGN--SLPVMVWIHGGGFMFGSG--------SLY------PGDGLAREGDNVIVVSINYRLG 136 (493)
T ss_pred CCcC--CeEEEEeCCCCCCCC--CCCEEEEEcCCccccCCC--------CCC------ChHHHHhcCCCEEEEEeccccc
Confidence 4465 455588897643223 489999999998643221 111 1234454 43 899988888 7
Q ss_pred cCCCCCCCCchhhHHHHHHHHHHHHHHHHHc--CC-CCCCcEEEEEechHHHHHHHHHHh--CCCceeEEEeccCCCC
Q 005240 566 IIGEGDKLPNDRFVEQLVSSAEAAVEEVVRR--GV-ADPSRIAVGGHSYGAFMTAHLLAH--APHLFCCGIARSGSYN 638 (706)
Q Consensus 566 ~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~--~~-id~~~i~i~G~S~GG~~a~~~~~~--~p~~~~a~v~~~~~~d 638 (706)
..|+.........++..+.|+..|++|+.+. .+ .||+||.|+|+|+||+++.+++.. .+.+|+++|+.+|...
T Consensus 137 ~~g~~~~~~~~~~~n~g~~D~~~al~wv~~~i~~fggd~~~v~~~G~SaG~~~~~~~~~~~~~~~lf~~~i~~sg~~~ 214 (493)
T cd00312 137 VLGFLSTGDIELPGNYGLKDQRLALKWVQDNIAAFGGDPDSVTIFGESAGGASVSLLLLSPDSKGLFHRAISQSGSAL 214 (493)
T ss_pred ccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHhCCCcceEEEEeecHHHHHhhhHhhCcchhHHHHHHhhhcCCcc
Confidence 7777544332333455689999999999885 33 799999999999999999999877 3458999999998654
|
) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate. |
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.2e-07 Score=87.40 Aligned_cols=270 Identities=10% Similarity=0.037 Sum_probs=159.8
Q ss_pred CCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccc
Q 005240 59 SCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMT 138 (706)
Q Consensus 59 ~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (706)
.....|..+.+.+|...+-...++. .+..+...||++.|+...
T Consensus 17 ~YDhTIRfWqa~tG~C~rTiqh~ds----qVNrLeiTpdk~~LAaa~--------------------------------- 59 (311)
T KOG0315|consen 17 GYDHTIRFWQALTGICSRTIQHPDS----QVNRLEITPDKKDLAAAG--------------------------------- 59 (311)
T ss_pred cCcceeeeeehhcCeEEEEEecCcc----ceeeEEEcCCcchhhhcc---------------------------------
Confidence 4557788888889988766544432 377788999999888652
Q ss_pred hhccCCchhhhhhhhcccceEEEEcc-CCCceecC--CC--ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEE
Q 005240 139 DNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFG--TP--AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQV 213 (706)
Q Consensus 139 ~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~~~lt--~~--~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~ 213 (706)
..+|-++|+ ++.+.++. ++ ..+..+.|--||++++-.+.+ ..+.+
T Consensus 60 -----------------~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseD-------------gt~kI 109 (311)
T KOG0315|consen 60 -----------------NQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSED-------------GTVKI 109 (311)
T ss_pred -----------------CCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCC-------------ceEEE
Confidence 146667788 44444432 22 578899999999999754443 37889
Q ss_pred EecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceE
Q 005240 214 WTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEI 293 (706)
Q Consensus 214 ~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~ 293 (706)
||+..-...++...... +..+...|+... |+.. ...+.|++||+. +.....+
T Consensus 110 WdlR~~~~qR~~~~~sp-------------Vn~vvlhpnQte-Lis~------------dqsg~irvWDl~--~~~c~~~ 161 (311)
T KOG0315|consen 110 WDLRSLSCQRNYQHNSP-------------VNTVVLHPNQTE-LISG------------DQSGNIRVWDLG--ENSCTHE 161 (311)
T ss_pred EeccCcccchhccCCCC-------------cceEEecCCcce-EEee------------cCCCcEEEEEcc--CCccccc
Confidence 99886555555544321 225566777665 4422 123358899983 2334455
Q ss_pred Ee-ecccccccceecCCCceEEEEeeccccceEEEEEcCCCCCC--CceeeecCcccccccCCCCCceEeccCCCEEEEe
Q 005240 294 LH-KLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDV--APRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAK 370 (706)
Q Consensus 294 l~-~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 370 (706)
|. .....+.++...|||+.++...+ ....|..++-+++. +..++.+-..... ....-.+|||+++|+..
T Consensus 162 liPe~~~~i~sl~v~~dgsml~a~nn----kG~cyvW~l~~~~~~s~l~P~~k~~ah~~----~il~C~lSPd~k~lat~ 233 (311)
T KOG0315|consen 162 LIPEDDTSIQSLTVMPDGSMLAAANN----KGNCYVWRLLNHQTASELEPVHKFQAHNG----HILRCLLSPDVKYLATC 233 (311)
T ss_pred cCCCCCcceeeEEEcCCCcEEEEecC----CccEEEEEccCCCccccceEhhheecccc----eEEEEEECCCCcEEEee
Confidence 54 44677889999999999887642 23466666655432 2222222111111 12234579999999887
Q ss_pred eeccCCcceEEEEecCCCCCCCCCCceeeeecCCC-ceeeeecccchhhhhhhhhhccCCCceecccCCCEEEEEEecCC
Q 005240 371 IKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTG-SKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKT 449 (706)
Q Consensus 371 ~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~ 449 (706)
..+ .. ++.+..++- +.++.+.+... . .+.-.||.||++|+.. ++.
T Consensus 234 ssd----kt-----------------v~iwn~~~~~kle~~l~gh~r----W-------vWdc~FS~dg~YlvTa-ssd- 279 (311)
T KOG0315|consen 234 SSD----KT-----------------VKIWNTDDFFKLELVLTGHQR----W-------VWDCAFSADGEYLVTA-SSD- 279 (311)
T ss_pred cCC----ce-----------------EEEEecCCceeeEEEeecCCc----e-------EEeeeeccCccEEEec-CCC-
Confidence 532 21 222222222 22222222110 0 2456899999776654 444
Q ss_pred CCcEEEEEECCCCceeEe
Q 005240 450 EITQYHILSWPLKKSSQI 467 (706)
Q Consensus 450 ~p~~v~~~~~~~~~~~~l 467 (706)
....+|+++.++..+.
T Consensus 280 --~~~rlW~~~~~k~v~q 295 (311)
T KOG0315|consen 280 --HTARLWDLSAGKEVRQ 295 (311)
T ss_pred --CceeecccccCceeee
Confidence 3466888888775544
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.1e-08 Score=99.00 Aligned_cols=258 Identities=14% Similarity=0.109 Sum_probs=152.8
Q ss_pred cceeEeecCCCCCCCCeeeeecCC-CCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCc
Q 005240 5 TGIGIHRLLPDDSLGPEKEVHGYP-DGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~i~~~~-~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~ 83 (706)
..+.|..++. ..-..|+++- ....+....|+|+|+..+|++. .+.-+|.+|+++.+..++....+.
T Consensus 235 ~~lrifqvDG----k~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~---------rrky~ysyDle~ak~~k~~~~~g~ 301 (514)
T KOG2055|consen 235 GTLRIFQVDG----KVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSG---------RRKYLYSYDLETAKVTKLKPPYGV 301 (514)
T ss_pred CcEEEEEecC----ccChhheeeeeccCccceeeecCCCceEEEecc---------cceEEEEeeccccccccccCCCCc
Confidence 3456666644 2222333321 2224667899999996666653 346799999999988777543322
Q ss_pred cccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEc
Q 005240 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (706)
Q Consensus 84 ~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~ 163 (706)
-...+..|.-|+|+.+|++... .+.|+++.
T Consensus 302 -e~~~~e~FeVShd~~fia~~G~-------------------------------------------------~G~I~lLh 331 (514)
T KOG2055|consen 302 -EEKSMERFEVSHDSNFIAIAGN-------------------------------------------------NGHIHLLH 331 (514)
T ss_pred -ccchhheeEecCCCCeEEEccc-------------------------------------------------CceEEeeh
Confidence 1223668899999998887632 26788887
Q ss_pred c-CCC-ceecCCCceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccC
Q 005240 164 L-DGT-AKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVR 241 (706)
Q Consensus 164 l-~g~-~~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~ 241 (706)
. +++ ...+--.+.+..+.||.||+.|+..... .+||+||+............+..
T Consensus 332 akT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~-------------GeV~v~nl~~~~~~~rf~D~G~v---------- 388 (514)
T KOG2055|consen 332 AKTKELITSFKIEGVVSDFTFSSDSKELLASGGT-------------GEVYVWNLRQNSCLHRFVDDGSV---------- 388 (514)
T ss_pred hhhhhhhheeeeccEEeeEEEecCCcEEEEEcCC-------------ceEEEEecCCcceEEEEeecCcc----------
Confidence 7 443 2223223688899999999998766543 38999999855433322222221
Q ss_pred CCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCC-CCCCCCceEEee---cccccccceecCCCceEEEEe
Q 005240 242 EGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAE-PAEGEKPEILHK---LDLRFRSVSWCDDSLALVNET 317 (706)
Q Consensus 242 ~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-~~~~~~~~~l~~---~~~~~~~~~wspDg~~l~~~~ 317 (706)
+-..++-|++|+. |+.- .+ ++.+-++|.+ -+.+..++.+.. ....+.+++|++|++.|+..+
T Consensus 389 -~gts~~~S~ng~y-lA~G--S~----------~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS 454 (514)
T KOG2055|consen 389 -HGTSLCISLNGSY-LATG--SD----------SGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIAS 454 (514)
T ss_pred -ceeeeeecCCCce-EEec--cC----------cceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhh
Confidence 1125677888874 4321 12 2223344421 134556666543 356788999999999888876
Q ss_pred eccccceEEEEEcCCCCCCCceeeecCcccccccCC--CCCceEeccCCCEEEEee
Q 005240 318 WYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDP--GSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 318 ~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~ 371 (706)
..... .|-++.+.+- ...-.++..+ .+ ....+.|||.|.++++..
T Consensus 455 ~~~kn--alrLVHvPS~----TVFsNfP~~n---~~vg~vtc~aFSP~sG~lAvGN 501 (514)
T KOG2055|consen 455 RVKKN--ALRLVHVPSC----TVFSNFPTSN---TKVGHVTCMAFSPNSGYLAVGN 501 (514)
T ss_pred hcccc--ceEEEeccce----eeeccCCCCC---CcccceEEEEecCCCceEEeec
Confidence 44333 3444544441 1221111111 11 122467899999988864
|
|
| >PF08840 BAAT_C: BAAT / Acyl-CoA thioester hydrolase C terminal; InterPro: IPR014940 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.6e-09 Score=104.19 Aligned_cols=111 Identities=23% Similarity=0.171 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCCCC-----------CCC---c------
Q 005240 585 SAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKT-----------LTP---F------ 644 (706)
Q Consensus 585 D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d~~-----------~~~---~------ 644 (706)
-+..|++||++++.+++++|||+|.|.||.+|+.++++.| .++|+|+.+|..-.. ..| .
T Consensus 5 yfe~Ai~~L~~~p~v~~~~Igi~G~SkGaelALllAs~~~-~i~avVa~~ps~~~~~~~~~~~~~~~~lp~~~~~~~~~~ 83 (213)
T PF08840_consen 5 YFEEAIDWLKSHPEVDPDKIGIIGISKGAELALLLASRFP-QISAVVAISPSSVVFQGIGFYRDSSKPLPYLPFDISKFS 83 (213)
T ss_dssp HHHHHHHHHHCSTTB--SSEEEEEETHHHHHHHHHHHHSS-SEEEEEEES--SB--SSEEEETTE--EE----B-GGG-E
T ss_pred HHHHHHHHHHhCCCCCCCCEEEEEECHHHHHHHHHHhcCC-CccEEEEeCCceeEecchhcccCCCccCCcCCcChhhce
Confidence 4568999999999999999999999999999999999996 999999999752100 000 0
Q ss_pred --------------------------------------------cch----HHHHHHHHHhCCCc--EEEEEeCCCCccC
Q 005240 645 --------------------------------------------GFQ----AERFFDALKGHGAL--SRLVLLPFEHHVY 674 (706)
Q Consensus 645 --------------------------------------------~~~----~~~~~~~l~~~~~~--~~~~~~~~~~H~~ 674 (706)
.+. .+++.+.|++++.+ ++++.||++||.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~a~IpvE~i~~piLli~g~dD~~WpS~~~a~~i~~rL~~~~~~~~~~~l~Y~~aGH~i 163 (213)
T PF08840_consen 84 WNEPGLLRSRYAFELADDKAVEEARIPVEKIKGPILLISGEDDQIWPSSEMAEQIEERLKAAGFPHNVEHLSYPGAGHLI 163 (213)
T ss_dssp E-TTS-EE-TT-B--TTTGGGCCCB--GGG--SEEEEEEETT-SSS-HHHHHHHHHHHHHCTT-----EEEEETTB-S--
T ss_pred ecCCcceehhhhhhcccccccccccccHHHcCCCEEEEEeCCCCccchHHHHHHHHHHHHHhCCCCcceEEEcCCCCcee
Confidence 001 11667788888865 8899999999987
Q ss_pred CCc---------------------------ccHHHHHHHHHHHHHHHhc
Q 005240 675 AAR---------------------------ENVMHVIWETDRWLQKYCL 696 (706)
Q Consensus 675 ~~~---------------------------~~~~~~~~~~~~f~~~~l~ 696 (706)
.-+ ....+.+.++++||++||.
T Consensus 164 ~~Py~P~~~~~~~~~~~~~~~~GG~~~~~a~A~~dsW~~~l~Fl~~~L~ 212 (213)
T PF08840_consen 164 EPPYFPHCRASYHKFIGTPLAWGGEPEAHAKAQEDSWKKILEFLRKHLG 212 (213)
T ss_dssp -STT-----EEEETTTTEEEE--B-HHHHHHHHHHHHHHHHHHHHHH--
T ss_pred cCCCCCCcccccccccCCcccCCCChHHHHHHHHHHHHHHHHHHHHHhC
Confidence 421 0246889999999999985
|
Bile acid-CoA:amino acid N-acetyltransferase (BAAT) is involved in bile acid metabolism and may also act as an acyl-CoA thioesterase that regulates intracellular levels of free fatty acids []. This entry represents a catalytic domain is found at the C terminus of acyl-CoA thioester hydrolases and bile acid-CoA:amino acid N-acetyltransferases. ; PDB: 3K2I_B 3HLK_B. |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.3e-07 Score=101.94 Aligned_cols=267 Identities=18% Similarity=0.131 Sum_probs=145.5
Q ss_pred ceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCCCC
Q 005240 35 FVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPK 114 (706)
Q Consensus 35 ~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~ 114 (706)
...+||||++|||+.+. .++....|+++|+++|+...-.. .. .....+.|++||+.|+|..........
T Consensus 128 ~~~~Spdg~~la~~~s~-----~G~e~~~l~v~Dl~tg~~l~d~i-~~----~~~~~~~W~~d~~~~~y~~~~~~~~~~- 196 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSD-----GGSEWYTLRVFDLETGKFLPDGI-EN----PKFSSVSWSDDGKGFFYTRFDEDQRTS- 196 (414)
T ss_dssp EEEETTTSSEEEEEEEE-----TTSSEEEEEEEETTTTEEEEEEE-EE----EESEEEEECTTSSEEEEEECSTTTSS--
T ss_pred eeeECCCCCEEEEEecC-----CCCceEEEEEEECCCCcCcCCcc-cc----cccceEEEeCCCCEEEEEEeCcccccc-
Confidence 57899999999999863 23566889999999995433210 11 012248999999999888643221100
Q ss_pred CCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CC--CceecCCC---ce-EeeeeeCCCCc
Q 005240 115 KTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG--TAKDFGTP---AV-YTAVEPSPDQK 187 (706)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g--~~~~lt~~---~~-~~~~~~SpDG~ 187 (706)
. .....+||++.+ ++ +...|.+. .. ...+.+|+||+
T Consensus 197 ------~-------------------------------~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~ 239 (414)
T PF02897_consen 197 ------D-------------------------------SGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGR 239 (414)
T ss_dssp ------C-------------------------------CGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSS
T ss_pred ------c-------------------------------CCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCccc
Confidence 0 001268999998 44 22344433 23 56788999999
Q ss_pred EEEEEeeccCcccccccccccceEEEEecCCC-----eeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEe
Q 005240 188 YVLITSMHRPYSYKVPCARFSQKVQVWTTDGK-----LVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEA 262 (706)
Q Consensus 188 ~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~ 262 (706)
+|++.+..... .+.+++.++... +.+.|..... +...+ ....|.. +++..+
T Consensus 240 ~l~i~~~~~~~---------~s~v~~~d~~~~~~~~~~~~~l~~~~~-------------~~~~~-v~~~~~~-~yi~Tn 295 (414)
T PF02897_consen 240 YLFISSSSGTS---------ESEVYLLDLDDGGSPDAKPKLLSPRED-------------GVEYY-VDHHGDR-LYILTN 295 (414)
T ss_dssp EEEEEEESSSS---------EEEEEEEECCCTTTSS-SEEEEEESSS-------------S-EEE-EEEETTE-EEEEE-
T ss_pred EEEEEEEcccc---------CCeEEEEeccccCCCcCCcEEEeCCCC-------------ceEEE-EEccCCE-EEEeeC
Confidence 99887766431 268999999864 4555543221 11111 1122444 666655
Q ss_pred ccCCCCccccCccceeeeecCCCCCCCC---ce-EEeecccccccceecCCCceEEEEeeccccceEEEEEcCC-CCCCC
Q 005240 263 QDRGDANVEVSPRDIIYTQPAEPAEGEK---PE-ILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPG-SKDVA 337 (706)
Q Consensus 263 ~~~~~~~~~~~~~~~l~~~d~~~~~~~~---~~-~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~-~~~~~ 337 (706)
.+. .+..|+.++++ ... .+ .+........--.++..+.+|++... .++..+|.++++. +. .
T Consensus 296 ~~a--------~~~~l~~~~l~---~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~-~~~~~~l~v~~~~~~~--~ 361 (414)
T PF02897_consen 296 DDA--------PNGRLVAVDLA---DPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYR-ENGSSRLRVYDLDDGK--E 361 (414)
T ss_dssp TT---------TT-EEEEEETT---STSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEE-ETTEEEEEEEETT-TE--E
T ss_pred CCC--------CCcEEEEeccc---ccccccceeEEcCCCCceeEEEEEEECCEEEEEEE-ECCccEEEEEECCCCc--E
Confidence 322 23357788873 332 22 34444332222334445556666543 4467889999999 52 2
Q ss_pred ceeeecCcccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeee
Q 005240 338 PRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERI 410 (706)
Q Consensus 338 ~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l 410 (706)
...+.-.....+ ......+++..+.+.... . -.-+.+|.+|+++|+.+.+
T Consensus 362 ~~~~~~p~~g~v------~~~~~~~~~~~~~~~~ss--------------~---~~P~~~y~~d~~t~~~~~~ 411 (414)
T PF02897_consen 362 SREIPLPEAGSV------SGVSGDFDSDELRFSYSS--------------F---TTPPTVYRYDLATGELTLL 411 (414)
T ss_dssp EEEEESSSSSEE------EEEES-TT-SEEEEEEEE--------------T---TEEEEEEEEETTTTCEEEE
T ss_pred EeeecCCcceEE------eccCCCCCCCEEEEEEeC--------------C---CCCCEEEEEECCCCCEEEE
Confidence 222211111111 112234556666555421 1 1123688999999987665
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.9e-08 Score=91.56 Aligned_cols=255 Identities=18% Similarity=0.146 Sum_probs=147.5
Q ss_pred eeEeecCCCC-CCC-CeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCcc
Q 005240 7 IGIHRLLPDD-SLG-PEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (706)
Q Consensus 7 ~~~~~~~~~~-~~g-~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~ 84 (706)
|.+.+|..|+ +-| ..++++++ ...+.....||||++..-. .....|.++|+++|+.++...+...
T Consensus 40 ii~W~L~~dd~~~G~~~r~~~GH--sH~v~dv~~s~dg~~alS~----------swD~~lrlWDl~~g~~t~~f~GH~~- 106 (315)
T KOG0279|consen 40 IIVWKLTSDDIKYGVPVRRLTGH--SHFVSDVVLSSDGNFALSA----------SWDGTLRLWDLATGESTRRFVGHTK- 106 (315)
T ss_pred EEEEEeccCccccCceeeeeecc--ceEecceEEccCCceEEec----------cccceEEEEEecCCcEEEEEEecCC-
Confidence 4455555531 112 23444432 2368899999999877443 2336788889999887776544432
Q ss_pred ccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc
Q 005240 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (706)
Q Consensus 85 ~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l 164 (706)
.+-++++|||.+.|+..+.+ ..|-+++.
T Consensus 107 ---dVlsva~s~dn~qivSGSrD-------------------------------------------------kTiklwnt 134 (315)
T KOG0279|consen 107 ---DVLSVAFSTDNRQIVSGSRD-------------------------------------------------KTIKLWNT 134 (315)
T ss_pred ---ceEEEEecCCCceeecCCCc-------------------------------------------------ceeeeeee
Confidence 27789999999998865431 35666676
Q ss_pred CCC-ceecCCC---ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCcc
Q 005240 165 DGT-AKDFGTP---AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240 (706)
Q Consensus 165 ~g~-~~~lt~~---~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~ 240 (706)
-|. ...+... +-+..+.|||.....++.+... ...+.+||+++-+++.-.-+ ..
T Consensus 135 ~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~-----------DktvKvWnl~~~~l~~~~~g--h~--------- 192 (315)
T KOG0279|consen 135 LGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASW-----------DKTVKVWNLRNCQLRTTFIG--HS--------- 192 (315)
T ss_pred cccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccC-----------CceEEEEccCCcchhhcccc--cc---------
Confidence 442 2222222 5678999999964443333322 24799999997665442222 11
Q ss_pred CCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeecc
Q 005240 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYK 320 (706)
Q Consensus 241 ~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~ 320 (706)
.....+.+||||.. ++ .++.. ..+++||++ ++.....+ .....+.+..|+|+--.|....
T Consensus 193 -~~v~t~~vSpDGsl-ca-----sGgkd-------g~~~LwdL~--~~k~lysl-~a~~~v~sl~fspnrywL~~at--- 252 (315)
T KOG0279|consen 193 -GYVNTVTVSPDGSL-CA-----SGGKD-------GEAMLWDLN--EGKNLYSL-EAFDIVNSLCFSPNRYWLCAAT--- 252 (315)
T ss_pred -ccEEEEEECCCCCE-Ee-----cCCCC-------ceEEEEEcc--CCceeEec-cCCCeEeeEEecCCceeEeecc---
Confidence 11337799999985 32 12322 258889984 33332222 3456778899999966665432
Q ss_pred ccceEEEEEcCCCCCCCceee-ecCccc-ccccCCCCCceEeccCCCEEEEee
Q 005240 321 TSQTRTWLVCPGSKDVAPRVL-FDRVFE-NVYSDPGSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 321 ~~~~~l~~~d~~~~~~~~~~l-~~~~~~-~~~~~~~~~~~~~s~dg~~l~~~~ 371 (706)
...|-+.|++++. ....| .+.... .....|.-..++||+||.+|+...
T Consensus 253 --~~sIkIwdl~~~~-~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~ 302 (315)
T KOG0279|consen 253 --ATSIKIWDLESKA-VVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGY 302 (315)
T ss_pred --CCceEEEeccchh-hhhhccccccccccccCCcEEEEEEEcCCCcEEEeee
Confidence 1125566666632 11111 111100 111123334588999999987654
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.1e-07 Score=94.98 Aligned_cols=194 Identities=12% Similarity=0.086 Sum_probs=102.9
Q ss_pred CeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCC
Q 005240 43 KRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGP 122 (706)
Q Consensus 43 ~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~ 122 (706)
+.|+|+.. .+...|.++|.++.+.......... ......+||||+++|....
T Consensus 5 ~~l~~V~~--------~~~~~v~viD~~t~~~~~~i~~~~~----~h~~~~~s~Dgr~~yv~~r---------------- 56 (369)
T PF02239_consen 5 GNLFYVVE--------RGSGSVAVIDGATNKVVARIPTGGA----PHAGLKFSPDGRYLYVANR---------------- 56 (369)
T ss_dssp GGEEEEEE--------GGGTEEEEEETTT-SEEEEEE-STT----EEEEEE-TT-SSEEEEEET----------------
T ss_pred ccEEEEEe--------cCCCEEEEEECCCCeEEEEEcCCCC----ceeEEEecCCCCEEEEEcC----------------
Confidence 34556554 3457999999888764433221221 0234678999999887632
Q ss_pred ceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CC-CceecCCCceEeeeeeCCCCcEEEEEeeccCccc
Q 005240 123 KIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSY 200 (706)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g-~~~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~ 200 (706)
.+.|.++|+ ++ ...++..+....++++||||++|+.....
T Consensus 57 ---------------------------------dg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v~n~~----- 98 (369)
T PF02239_consen 57 ---------------------------------DGTVSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYVANYE----- 98 (369)
T ss_dssp ---------------------------------TSEEEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEEEEEE-----
T ss_pred ---------------------------------CCeEEEEECCcccEEEEEecCCCcceEEEcCCCCEEEEEecC-----
Confidence 157888999 55 45566666677899999999999766544
Q ss_pred ccccccccceEEEEecCCCee-EEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceee
Q 005240 201 KVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIY 279 (706)
Q Consensus 201 ~~~~~~~~~~i~~~~~~~~~~-~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~ 279 (706)
+..+.++|..+.++ +.+.........+ ......+.-+|++.. .+ + +.. +.+.++
T Consensus 99 -------~~~v~v~D~~tle~v~~I~~~~~~~~~~------~~Rv~aIv~s~~~~~-fV-v-~lk---------d~~~I~ 153 (369)
T PF02239_consen 99 -------PGTVSVIDAETLEPVKTIPTGGMPVDGP------ESRVAAIVASPGRPE-FV-V-NLK---------DTGEIW 153 (369)
T ss_dssp -------TTEEEEEETTT--EEEEEE--EE-TTTS---------EEEEEE-SSSSE-EE-E-EET---------TTTEEE
T ss_pred -------CCceeEeccccccceeeccccccccccc------CCCceeEEecCCCCE-EE-E-EEc---------cCCeEE
Confidence 35889999876543 4443321111000 011224556677664 22 2 111 234578
Q ss_pred eecCCCCCCCCceE--EeecccccccceecCCCceEEEEeeccccceEEEEEcCCC
Q 005240 280 TQPAEPAEGEKPEI--LHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (706)
Q Consensus 280 ~~d~~~~~~~~~~~--l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~ 333 (706)
++|.. ..+... .........+..|+||+++++...... ..|-.+|+.+
T Consensus 154 vVdy~---d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~s---n~i~viD~~~ 203 (369)
T PF02239_consen 154 VVDYS---DPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGS---NKIAVIDTKT 203 (369)
T ss_dssp EEETT---TSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGG---TEEEEEETTT
T ss_pred EEEec---cccccceeeecccccccccccCcccceeeeccccc---ceeEEEeecc
Confidence 88862 222222 223345566789999999987754322 2455555554
|
... |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.6e-06 Score=88.50 Aligned_cols=291 Identities=12% Similarity=0.048 Sum_probs=147.7
Q ss_pred eeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEec-CCCCCCCCCCCCCCCCceeecCCCcccccccchh
Q 005240 62 LRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIP-SSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDN 140 (706)
Q Consensus 62 ~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (706)
.+++++|.++++.......... ... ..||||+.||.... -.+...
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~-----P~~-~~spDg~~lyva~~~~~R~~~---------------------------- 72 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFL-----PNP-VVASDGSFFAHASTVYSRIAR---------------------------- 72 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCC-----Cce-eECCCCCEEEEEecccccccc----------------------------
Confidence 7999999998875443222221 233 49999999887632 011110
Q ss_pred ccCCchhhhhhhhcccceEEEEcc-CC-CceecCCC--------ceEeeeeeCCCCcEEEEEeeccCcccccccccccce
Q 005240 141 LLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTP--------AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQK 210 (706)
Q Consensus 141 ~~~~~~d~~~~~~~~~~~l~~~~l-~g-~~~~lt~~--------~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~ 210 (706)
......|-++|+ ++ ....+.-+ .....+++|||||+|++..... ...
T Consensus 73 ------------G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p-----------~~~ 129 (352)
T TIGR02658 73 ------------GKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSP-----------SPA 129 (352)
T ss_pred ------------CCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCC-----------CCE
Confidence 002256777787 55 33344322 2344889999999998655332 257
Q ss_pred EEEEecCCCeeEE-cccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCC
Q 005240 211 VQVWTTDGKLVRE-LCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGE 289 (706)
Q Consensus 211 i~~~~~~~~~~~~-l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~ 289 (706)
+-++|+.++++.. +.-.......+. .....+..+.||+. +.+....++. . ...
T Consensus 130 V~VvD~~~~kvv~ei~vp~~~~vy~t------~e~~~~~~~~Dg~~-~~v~~d~~g~-~----------~~~-------- 183 (352)
T TIGR02658 130 VGVVDLEGKAFVRMMDVPDCYHIFPT------ANDTFFMHCRDGSL-AKVGYGTKGN-P----------KIK-------- 183 (352)
T ss_pred EEEEECCCCcEEEEEeCCCCcEEEEe------cCCccEEEeecCce-EEEEecCCCc-e----------EEe--------
Confidence 8999999766543 332211110010 00113344566654 3222111111 0 000
Q ss_pred CceEEeec--ccccccceecC-CCceEEEEeeccccceEEEEEcCCCCCCCceeeecC-ccccc--ccCCCCCc-eEecc
Q 005240 290 KPEILHKL--DLRFRSVSWCD-DSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDR-VFENV--YSDPGSPM-MTRTS 362 (706)
Q Consensus 290 ~~~~l~~~--~~~~~~~~wsp-Dg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~-~~~~~--~~~~~~~~-~~~s~ 362 (706)
...++.. ..-...|.+++ ||++++.+. + ..|+.+|+.+.+......++. ..... .-.|+..+ +++++
T Consensus 184 -~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~-e----G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~ 257 (352)
T TIGR02658 184 -PTEVFHPEDEYLINHPAYSNKSGRLVWPTY-T----GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHR 257 (352)
T ss_pred -eeeeecCCccccccCCceEcCCCcEEEEec-C----CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcC
Confidence 0011111 11223345566 787666543 2 579999987643111111110 00000 11344432 55688
Q ss_pred CCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeeecccchhhhhhhhhhccCCCceecccCCCEEE
Q 005240 363 TGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKIL 442 (706)
Q Consensus 363 dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~ 442 (706)
||+++++.... + +.|.+. ..-.+++.+|.++++..+.+.... ..+.+.+|||++.++
T Consensus 258 dg~~lyV~~~~---~-------~~~thk-~~~~~V~ViD~~t~kvi~~i~vG~------------~~~~iavS~Dgkp~l 314 (352)
T TIGR02658 258 ARDRIYLLADQ---R-------AKWTHK-TASRFLFVVDAKTGKRLRKIELGH------------EIDSINVSQDAKPLL 314 (352)
T ss_pred CCCEEEEEecC---C-------cccccc-CCCCEEEEEECCCCeEEEEEeCCC------------ceeeEEECCCCCeEE
Confidence 88887774311 0 011111 122379999999988765544332 123578999999566
Q ss_pred EEEecCCCCcEEEEEECCCCceeE
Q 005240 443 TSKESKTEITQYHILSWPLKKSSQ 466 (706)
Q Consensus 443 ~~~~~~~~p~~v~~~~~~~~~~~~ 466 (706)
|+.+.. ...|.++|..+++..+
T Consensus 315 yvtn~~--s~~VsViD~~t~k~i~ 336 (352)
T TIGR02658 315 YALSTG--DKTLYIFDAETGKELS 336 (352)
T ss_pred EEeCCC--CCcEEEEECcCCeEEe
Confidence 554432 3448899988875443
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.7e-08 Score=108.59 Aligned_cols=155 Identities=20% Similarity=0.288 Sum_probs=94.5
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEc------C--CCc--------eeecccCCCccccccccceEEe
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADA------E--TGE--------AKPLFESPDICLNAVFGSFVWV 95 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~------~--~g~--------~~~lt~~~~~~~~~~~~~~~wS 95 (706)
.+..++|||||++||+.++ +....||-+.. - +|. ...+..+. ...+.++.||
T Consensus 71 sv~CVR~S~dG~~lAsGSD--------D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H----~~DV~Dv~Ws 138 (942)
T KOG0973|consen 71 SVNCVRFSPDGSYLASGSD--------DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGH----DSDVLDVNWS 138 (942)
T ss_pred ceeEEEECCCCCeEeeccC--------cceEEEeeecccCCcccccccccccccceeeEEEEEecC----CCccceeccC
Confidence 5778999999999999764 44455676652 0 011 11111111 1127789999
Q ss_pred cCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCC-ceecCC
Q 005240 96 NNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGT 173 (706)
Q Consensus 96 pDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~-~~~lt~ 173 (706)
||+.+|+..+.+ ..+.+++. +.+ .+.+-.
T Consensus 139 p~~~~lvS~s~D-------------------------------------------------nsViiwn~~tF~~~~vl~~ 169 (942)
T KOG0973|consen 139 PDDSLLVSVSLD-------------------------------------------------NSVIIWNAKTFELLKVLRG 169 (942)
T ss_pred CCccEEEEeccc-------------------------------------------------ceEEEEccccceeeeeeec
Confidence 999998876421 45666676 333 333333
Q ss_pred C-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCC-CeeEEcccCCCCCCCCcccCccCCCCcceeeec
Q 005240 174 P-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG-KLVRELCDLPPAEDIPVCYNSVREGMRSISWRA 251 (706)
Q Consensus 174 ~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~sp 251 (706)
. ..+-.+.|.|-|++++-.+.++ .|.+|+... +-.+.++ .+..+..-. ...+.++|||
T Consensus 170 H~s~VKGvs~DP~Gky~ASqsdDr-------------tikvwrt~dw~i~k~It-~pf~~~~~~------T~f~RlSWSP 229 (942)
T KOG0973|consen 170 HQSLVKGVSWDPIGKYFASQSDDR-------------TLKVWRTSDWGIEKSIT-KPFEESPLT------TFFLRLSWSP 229 (942)
T ss_pred ccccccceEECCccCeeeeecCCc-------------eEEEEEcccceeeEeec-cchhhCCCc------ceeeecccCC
Confidence 3 6778999999999999777654 688888653 3333333 322211100 1134789999
Q ss_pred CCCceEEEEEeccCCCC
Q 005240 252 DKPSTLYWVEAQDRGDA 268 (706)
Q Consensus 252 dg~~~l~~~~~~~~~~~ 268 (706)
||.. |+...+-+++..
T Consensus 230 DG~~-las~nA~n~~~~ 245 (942)
T KOG0973|consen 230 DGHH-LASPNAVNGGKS 245 (942)
T ss_pred CcCe-ecchhhccCCcc
Confidence 9998 765544444443
|
|
| >PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3 | Back alignment and domain information |
|---|
Probab=98.97 E-value=6.5e-09 Score=100.02 Aligned_cols=114 Identities=18% Similarity=0.183 Sum_probs=82.4
Q ss_pred EEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCCCCc
Q 005240 496 TATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPN 575 (706)
Q Consensus 496 ~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~ 575 (706)
+-.++.|.. .+.||+||+.||-. +..+ + +....+.+++.||+|+.++.....+.+
T Consensus 5 ~l~v~~P~~-----~g~yPVv~f~~G~~---------~~~s---~---Ys~ll~hvAShGyIVV~~d~~~~~~~~----- 59 (259)
T PF12740_consen 5 PLLVYYPSS-----AGTYPVVLFLHGFL---------LINS---W---YSQLLEHVASHGYIVVAPDLYSIGGPD----- 59 (259)
T ss_pred CeEEEecCC-----CCCcCEEEEeCCcC---------CCHH---H---HHHHHHHHHhCceEEEEecccccCCCC-----
Confidence 456788876 45699999999831 1111 1 234567789999999997743322211
Q ss_pred hhhHHHHHHHHHHHHHHHHHc--C------CCCCCcEEEEEechHHHHHHHHHHhC-----CCceeEEEeccCCC
Q 005240 576 DRFVEQLVSSAEAAVEEVVRR--G------VADPSRIAVGGHSYGAFMTAHLLAHA-----PHLFCCGIARSGSY 637 (706)
Q Consensus 576 ~~~~~~~~~D~~~~~~~l~~~--~------~id~~~i~i~G~S~GG~~a~~~~~~~-----p~~~~a~v~~~~~~ 637 (706)
.....+++.+.++|+.+. . .+|-+||+|+|||.||-++..++... +.+|+|++...|+-
T Consensus 60 ---~~~~~~~~~~vi~Wl~~~L~~~l~~~v~~D~s~l~l~GHSrGGk~Af~~al~~~~~~~~~~~~ali~lDPVd 131 (259)
T PF12740_consen 60 ---DTDEVASAAEVIDWLAKGLESKLPLGVKPDFSKLALAGHSRGGKVAFAMALGNASSSLDLRFSALILLDPVD 131 (259)
T ss_pred ---cchhHHHHHHHHHHHHhcchhhccccccccccceEEeeeCCCCHHHHHHHhhhcccccccceeEEEEecccc
Confidence 133466777888898762 1 15888999999999999999998887 45899999999986
|
1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process |
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.2e-07 Score=91.65 Aligned_cols=244 Identities=15% Similarity=0.143 Sum_probs=144.5
Q ss_pred cceeEeecCCCCCCCC-eeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCce-eecccCCC
Q 005240 5 TGIGIHRLLPDDSLGP-EKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-KPLFESPD 82 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~-~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~-~~lt~~~~ 82 (706)
..|.++++.. ++ ...+.. ....+..+.|+|+++.|+.... ...|++++..+++. ..+.....
T Consensus 31 g~i~i~~~~~----~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~----------~~~i~i~~~~~~~~~~~~~~~~~ 94 (289)
T cd00200 31 GTIKVWDLET----GELLRTLKG--HTGPVRDVAASADGTYLASGSS----------DKTIRLWDLETGECVRTLTGHTS 94 (289)
T ss_pred cEEEEEEeeC----CCcEEEEec--CCcceeEEEECCCCCEEEEEcC----------CCeEEEEEcCcccceEEEeccCC
Confidence 3577888865 43 233321 2224568999999998887642 36788888877543 33332222
Q ss_pred ccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEE
Q 005240 83 ICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLG 162 (706)
Q Consensus 83 ~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~ 162 (706)
.+..+.|+|+++.|+.... .+.|.++
T Consensus 95 -----~i~~~~~~~~~~~~~~~~~-------------------------------------------------~~~i~~~ 120 (289)
T cd00200 95 -----YVSSVAFSPDGRILSSSSR-------------------------------------------------DKTIKVW 120 (289)
T ss_pred -----cEEEEEEcCCCCEEEEecC-------------------------------------------------CCeEEEE
Confidence 2678899999876665421 1567777
Q ss_pred ccC-CC-ceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCc
Q 005240 163 SLD-GT-AKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNS 239 (706)
Q Consensus 163 ~l~-g~-~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~ 239 (706)
++. ++ ...+... ..+..+.|+|+++.|+..... ..+.+|++...+.........
T Consensus 121 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~-------------~~i~i~d~~~~~~~~~~~~~~---------- 177 (289)
T cd00200 121 DVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQD-------------GTIKLWDLRTGKCVATLTGHT---------- 177 (289)
T ss_pred ECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCC-------------CcEEEEEccccccceeEecCc----------
Confidence 874 53 3333333 568899999998877655422 378999998544322222110
Q ss_pred cCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceE-EeecccccccceecCCCceEEEEee
Q 005240 240 VREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEI-LHKLDLRFRSVSWCDDSLALVNETW 318 (706)
Q Consensus 240 ~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~-l~~~~~~~~~~~wspDg~~l~~~~~ 318 (706)
.....+.|+|+++. |+.... .+.+.++|. ..++... +......+..+.|+|++..++...
T Consensus 178 --~~i~~~~~~~~~~~-l~~~~~------------~~~i~i~d~---~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~- 238 (289)
T cd00200 178 --GEVNSVAFSPDGEK-LLSSSS------------DGTIKLWDL---STGKCLGTLRGHENGVNSVAFSPDGYLLASGS- 238 (289)
T ss_pred --cccceEEECCCcCE-EEEecC------------CCcEEEEEC---CCCceecchhhcCCceEEEEEcCCCcEEEEEc-
Confidence 12447899999976 554421 124778887 4444333 334556788899999976666543
Q ss_pred ccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEee
Q 005240 319 YKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 319 ~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 371 (706)
....|+++++.++ +........ ......+.|+++++.++...
T Consensus 239 ---~~~~i~i~~~~~~--~~~~~~~~~------~~~i~~~~~~~~~~~l~~~~ 280 (289)
T cd00200 239 ---EDGTIRVWDLRTG--ECVQTLSGH------TNSVTSLAWSPDGKRLASGS 280 (289)
T ss_pred ---CCCcEEEEEcCCc--eeEEEcccc------CCcEEEEEECCCCCEEEEec
Confidence 1234677777653 222222211 01123467889988776653
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.6e-08 Score=94.23 Aligned_cols=150 Identities=17% Similarity=0.268 Sum_probs=91.9
Q ss_pred cccceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCC
Q 005240 3 FFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD 82 (706)
Q Consensus 3 ~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~ 82 (706)
++.+..|..++. ++.+...+. +.....+..++|||+|+++|.+.. .....+.++|+++.....+ +.
T Consensus 35 ~~~~~~l~~~~~--~~~~~~~i~-l~~~~~I~~~~WsP~g~~favi~g--------~~~~~v~lyd~~~~~i~~~---~~ 100 (194)
T PF08662_consen 35 YYGEFELFYLNE--KNIPVESIE-LKKEGPIHDVAWSPNGNEFAVIYG--------SMPAKVTLYDVKGKKIFSF---GT 100 (194)
T ss_pred EEeeEEEEEEec--CCCccceee-ccCCCceEEEEECcCCCEEEEEEc--------cCCcccEEEcCcccEeEee---cC
Confidence 344455555544 335555554 333335899999999999988753 2223677777764443433 22
Q ss_pred ccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEE
Q 005240 83 ICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLG 162 (706)
Q Consensus 83 ~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~ 162 (706)
. ....+.|||+|++|++..-. . ..+.|..+
T Consensus 101 ~----~~n~i~wsP~G~~l~~~g~~--n--------------------------------------------~~G~l~~w 130 (194)
T PF08662_consen 101 Q----PRNTISWSPDGRFLVLAGFG--N--------------------------------------------LNGDLEFW 130 (194)
T ss_pred C----CceEEEECCCCCEEEEEEcc--C--------------------------------------------CCcEEEEE
Confidence 1 14578999999998886421 0 11567778
Q ss_pred ccCC-CceecCCCceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEE
Q 005240 163 SLDG-TAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRE 223 (706)
Q Consensus 163 ~l~g-~~~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 223 (706)
|... +............++|||||++|+...... ..+..+.+.+|+..|..+.+
T Consensus 131 d~~~~~~i~~~~~~~~t~~~WsPdGr~~~ta~t~~-------r~~~dng~~Iw~~~G~~l~~ 185 (194)
T PF08662_consen 131 DVRKKKKISTFEHSDATDVEWSPDGRYLATATTSP-------RLRVDNGFKIWSFQGRLLYK 185 (194)
T ss_pred ECCCCEEeeccccCcEEEEEEcCCCCEEEEEEecc-------ceeccccEEEEEecCeEeEe
Confidence 8853 222222224677999999999998765431 11123678888888776544
|
|
| >PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.4e-08 Score=91.88 Aligned_cols=115 Identities=21% Similarity=0.215 Sum_probs=74.8
Q ss_pred hHHHHHHHCCeEEEEcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCC
Q 005240 546 TSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH 625 (706)
Q Consensus 546 ~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~ 625 (706)
.+++.|+++||.|+..+.+ +.+.. ....++..+++++.+.. .|+++|+++|+|+||.+++.++.+. .
T Consensus 17 ~~~~~l~~~G~~v~~~~~~---~~~~~--------~~~~~~~~~~~~~~~~~-~~~~~i~l~G~S~Gg~~a~~~~~~~-~ 83 (145)
T PF12695_consen 17 PLAEALAEQGYAVVAFDYP---GHGDS--------DGADAVERVLADIRAGY-PDPDRIILIGHSMGGAIAANLAARN-P 83 (145)
T ss_dssp HHHHHHHHTTEEEEEESCT---TSTTS--------HHSHHHHHHHHHHHHHH-CTCCEEEEEEETHHHHHHHHHHHHS-T
T ss_pred HHHHHHHHCCCEEEEEecC---CCCcc--------chhHHHHHHHHHHHhhc-CCCCcEEEEEEccCcHHHHHHhhhc-c
Confidence 4567889999999996664 33332 11124445555543322 2889999999999999999999999 8
Q ss_pred ceeEEEeccCCCCCC-----CCCc---------cchHHHHHHHHHhCCCcEEEEEeCCCCcc
Q 005240 626 LFCCGIARSGSYNKT-----LTPF---------GFQAERFFDALKGHGALSRLVLLPFEHHV 673 (706)
Q Consensus 626 ~~~a~v~~~~~~d~~-----~~~~---------~~~~~~~~~~l~~~~~~~~~~~~~~~~H~ 673 (706)
.++++|+++|..+.. ..|. ....+...+..++...+.+++++||++|.
T Consensus 84 ~v~~~v~~~~~~~~~~~~~~~~pv~~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~i~g~~H~ 145 (145)
T PF12695_consen 84 RVKAVVLLSPYPDSEDLAKIRIPVLFIHGENDPLVPPEQVRRLYEALPGPKELYIIPGAGHF 145 (145)
T ss_dssp TESEEEEESESSGCHHHTTTTSEEEEEEETT-SSSHHHHHHHHHHHHCSSEEEEEETTS-TT
T ss_pred ceeEEEEecCccchhhhhccCCcEEEEEECCCCcCCHHHHHHHHHHcCCCcEEEEeCCCcCc
Confidence 999999999943211 0111 11122222223333467899999999994
|
... |
| >COG0400 Predicted esterase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.1e-08 Score=92.44 Aligned_cols=108 Identities=25% Similarity=0.202 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCCCCC--------CCc---------
Q 005240 582 LVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTL--------TPF--------- 644 (706)
Q Consensus 582 ~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d~~~--------~~~--------- 644 (706)
....+.+.++.+.++.-+|.+|+.+.|+|.|+.+++.++.+.|+.|+++++++|.+-... .|.
T Consensus 79 ~~~~~~~~l~~~~~~~gi~~~~ii~~GfSqGA~ial~~~l~~~~~~~~ail~~g~~~~~~~~~~~~~~~pill~hG~~Dp 158 (207)
T COG0400 79 ETEKLAEFLEELAEEYGIDSSRIILIGFSQGANIALSLGLTLPGLFAGAILFSGMLPLEPELLPDLAGTPILLSHGTEDP 158 (207)
T ss_pred HHHHHHHHHHHHHHHhCCChhheEEEecChHHHHHHHHHHhCchhhccchhcCCcCCCCCccccccCCCeEEEeccCcCC
Confidence 345556666666666779999999999999999999999999999999999999764332 111
Q ss_pred ---cchHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHh
Q 005240 645 ---GFQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYC 695 (706)
Q Consensus 645 ---~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~~~~l 695 (706)
.....++.+.|++.|.+++...++ .+|.+. .+.++.+.+|+.+.+
T Consensus 159 vvp~~~~~~l~~~l~~~g~~v~~~~~~-~GH~i~-----~e~~~~~~~wl~~~~ 206 (207)
T COG0400 159 VVPLALAEALAEYLTASGADVEVRWHE-GGHEIP-----PEELEAARSWLANTL 206 (207)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEEEec-CCCcCC-----HHHHHHHHHHHHhcc
Confidence 013349999999999999999999 799986 367788888988754
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.4e-08 Score=100.31 Aligned_cols=213 Identities=16% Similarity=0.190 Sum_probs=130.9
Q ss_pred ceeEeecCCCCCCCCeeeeecCCCC-CcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCcc
Q 005240 6 GIGIHRLLPDDSLGPEKEVHGYPDG-AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (706)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~i~~~~~~-~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~ 84 (706)
++.+++++. ++.|..+... .++..++|.|+|++|+.++. +....|| |+.+++...+-.+..
T Consensus 242 tvklw~~~~------e~~l~~l~gH~~RVs~VafHPsG~~L~Tasf--------D~tWRlW--D~~tk~ElL~QEGHs-- 303 (459)
T KOG0272|consen 242 TVKLWKLSQ------ETPLQDLEGHLARVSRVAFHPSGKFLGTASF--------DSTWRLW--DLETKSELLLQEGHS-- 303 (459)
T ss_pred ceeeeccCC------CcchhhhhcchhhheeeeecCCCceeeeccc--------ccchhhc--ccccchhhHhhcccc--
Confidence 455556544 2444333322 47999999999999998775 4446665 666665444433322
Q ss_pred ccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc
Q 005240 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (706)
Q Consensus 85 ~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l 164 (706)
.++.+++|.|||..++....+ ..++|| |+
T Consensus 304 --~~v~~iaf~~DGSL~~tGGlD-----------------------------------------------~~~RvW--Dl 332 (459)
T KOG0272|consen 304 --KGVFSIAFQPDGSLAATGGLD-----------------------------------------------SLGRVW--DL 332 (459)
T ss_pred --cccceeEecCCCceeeccCcc-----------------------------------------------chhhee--ec
Confidence 247899999999976543211 114554 77
Q ss_pred -CCCceecCCC--ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccC
Q 005240 165 -DGTAKDFGTP--AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVR 241 (706)
Q Consensus 165 -~g~~~~lt~~--~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~ 241 (706)
+|....+..+ ..+..++|||+|-.|+-.+.+ +.+.+||+..... +...+...
T Consensus 333 Rtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~D-------------nt~kVWDLR~r~~--ly~ipAH~---------- 387 (459)
T KOG0272|consen 333 RTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSD-------------NTCKVWDLRMRSE--LYTIPAHS---------- 387 (459)
T ss_pred ccCcEEEEecccccceeeEeECCCceEEeecCCC-------------CcEEEeeeccccc--ceeccccc----------
Confidence 6744443333 678899999999988755433 4788999974432 22222211
Q ss_pred CCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccc
Q 005240 242 EGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKT 321 (706)
Q Consensus 242 ~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~ 321 (706)
+-+..+.|+|+....|+-.. .+. .+.+|.-. .....+.|..+...+.++..|+||..|+..+.+
T Consensus 388 nlVS~Vk~~p~~g~fL~Tas----yD~--------t~kiWs~~--~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~D-- 451 (459)
T KOG0272|consen 388 NLVSQVKYSPQEGYFLVTAS----YDN--------TVKIWSTR--TWSPLKSLAGHEGKVISLDISPDSQAIATSSFD-- 451 (459)
T ss_pred chhhheEecccCCeEEEEcc----cCc--------ceeeecCC--CcccchhhcCCccceEEEEeccCCceEEEeccC--
Confidence 11346789996655344221 111 23344431 334556778889999999999999999876532
Q ss_pred cceEEEE
Q 005240 322 SQTRTWL 328 (706)
Q Consensus 322 ~~~~l~~ 328 (706)
..-+||.
T Consensus 452 RT~KLW~ 458 (459)
T KOG0272|consen 452 RTIKLWR 458 (459)
T ss_pred ceeeecc
Confidence 4456663
|
|
| >COG2272 PnbA Carboxylesterase type B [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.89 E-value=6.6e-09 Score=106.99 Aligned_cols=131 Identities=23% Similarity=0.209 Sum_probs=89.1
Q ss_pred cCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCC-eEEEEcCCC-CcC
Q 005240 490 KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARR-FAVLAGPSI-PII 567 (706)
Q Consensus 490 ~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G-~~v~~~~~~-~~~ 567 (706)
+|...+ =|+.|+ .... +.||+||+|||.+..|+.+.. ....+.|+++| ++|+..|+| |--
T Consensus 77 EDCL~L--NIwaP~-~~a~---~~PVmV~IHGG~y~~Gs~s~~------------~ydgs~La~~g~vVvVSvNYRLG~l 138 (491)
T COG2272 77 EDCLYL--NIWAPE-VPAE---KLPVMVYIHGGGYIMGSGSEP------------LYDGSALAARGDVVVVSVNYRLGAL 138 (491)
T ss_pred ccceeE--EeeccC-CCCC---CCcEEEEEeccccccCCCccc------------ccChHHHHhcCCEEEEEeCcccccc
Confidence 466444 488898 2222 389999999997754332211 12346788888 888887776 444
Q ss_pred CCCCC--CC--chhhHHHHHHHHHHHHHHHHHc--CC-CCCCcEEEEEechHHHHHHHHHHh--CCCceeEEEeccCCCC
Q 005240 568 GEGDK--LP--NDRFVEQLVSSAEAAVEEVVRR--GV-ADPSRIAVGGHSYGAFMTAHLLAH--APHLFCCGIARSGSYN 638 (706)
Q Consensus 568 g~g~~--~~--~~~~~~~~~~D~~~~~~~l~~~--~~-id~~~i~i~G~S~GG~~a~~~~~~--~p~~~~a~v~~~~~~d 638 (706)
|+=.- +. ....-+.-+.|++.|++|+.+. .| -||++|.|+|.|.|++.++.+++. ....|+-+|+.+|..-
T Consensus 139 GfL~~~~~~~~~~~~~n~Gl~DqilALkWV~~NIe~FGGDp~NVTl~GeSAGa~si~~Lla~P~AkGLF~rAi~~Sg~~~ 218 (491)
T COG2272 139 GFLDLSSLDTEDAFASNLGLLDQILALKWVRDNIEAFGGDPQNVTLFGESAGAASILTLLAVPSAKGLFHRAIALSGAAS 218 (491)
T ss_pred eeeehhhccccccccccccHHHHHHHHHHHHHHHHHhCCCccceEEeeccchHHHHHHhhcCccchHHHHHHHHhCCCCC
Confidence 43110 00 0111224589999999999985 34 799999999999999999888765 2237888888888665
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.5e-06 Score=80.90 Aligned_cols=253 Identities=15% Similarity=0.177 Sum_probs=153.0
Q ss_pred CCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCC
Q 005240 30 GAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSR 109 (706)
Q Consensus 30 ~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~ 109 (706)
...+..+.||+||..++..+. ...|.++|...|+..+....+. +++....+.-....+...+..
T Consensus 14 ~~~i~sl~fs~~G~~litss~----------dDsl~LYd~~~g~~~~ti~skk----yG~~~~~Fth~~~~~i~sStk-- 77 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLITSSE----------DDSLRLYDSLSGKQVKTINSKK----YGVDLACFTHHSNTVIHSSTK-- 77 (311)
T ss_pred CCceeEEEecCCCCEEEEecC----------CCeEEEEEcCCCceeeEeeccc----ccccEEEEecCCceEEEccCC--
Confidence 336888999999999988542 2477788888777666544432 235666676555444444320
Q ss_pred CCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCCceecCCC--ceEeeeeeCCCC
Q 005240 110 RDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP--AVYTAVEPSPDQ 186 (706)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~~~lt~~--~~~~~~~~SpDG 186 (706)
....|-.+++ +.+-.+...+ ..+..++.||-+
T Consensus 78 ---------------------------------------------~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~ 112 (311)
T KOG1446|consen 78 ---------------------------------------------EDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKD 112 (311)
T ss_pred ---------------------------------------------CCCceEEEEeecCceEEEcCCCCceEEEEEecCCC
Confidence 0145666777 5655555555 678899999988
Q ss_pred cEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCC
Q 005240 187 KYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRG 266 (706)
Q Consensus 187 ~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~ 266 (706)
...+-.+.+ ..|++||+...+-+-+....+ ..-.+|.|.| |+|+....+
T Consensus 113 d~FlS~S~D-------------~tvrLWDlR~~~cqg~l~~~~--------------~pi~AfDp~G---LifA~~~~~- 161 (311)
T KOG1446|consen 113 DTFLSSSLD-------------KTVRLWDLRVKKCQGLLNLSG--------------RPIAAFDPEG---LIFALANGS- 161 (311)
T ss_pred CeEEecccC-------------CeEEeeEecCCCCceEEecCC--------------CcceeECCCC---cEEEEecCC-
Confidence 665544333 489999998555444333321 1145899998 555543221
Q ss_pred CCccccCccceeeeecCCCCCCCCceEEe---ecccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeec
Q 005240 267 DANVEVSPRDIIYTQPAEPAEGEKPEILH---KLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFD 343 (706)
Q Consensus 267 ~~~~~~~~~~~l~~~d~~~~~~~~~~~l~---~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~ 343 (706)
..|.+.|+.-++.|--+... ........+.|||||+.|+... ....++++|.=.|. ...-+.
T Consensus 162 ---------~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT----~~s~~~~lDAf~G~--~~~tfs 226 (311)
T KOG1446|consen 162 ---------ELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLST----NASFIYLLDAFDGT--VKSTFS 226 (311)
T ss_pred ---------CeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEe----CCCcEEEEEccCCc--EeeeEe
Confidence 24777777544444434332 2245677899999999999865 34468899987743 222221
Q ss_pred CcccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeeecc
Q 005240 344 RVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWES 413 (706)
Q Consensus 344 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~ 413 (706)
.....- ..| .+-.++|||+.|+..++. + +|..+++++|+....+..
T Consensus 227 ~~~~~~-~~~--~~a~ftPds~Fvl~gs~d----g-----------------~i~vw~~~tg~~v~~~~~ 272 (311)
T KOG1446|consen 227 GYPNAG-NLP--LSATFTPDSKFVLSGSDD----G-----------------TIHVWNLETGKKVAVLRG 272 (311)
T ss_pred eccCCC-Ccc--eeEEECCCCcEEEEecCC----C-----------------cEEEEEcCCCcEeeEecC
Confidence 111100 001 135579999998877631 1 355566678876666655
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.89 E-value=9.4e-07 Score=90.54 Aligned_cols=305 Identities=13% Similarity=0.101 Sum_probs=164.2
Q ss_pred CcccceeeCCCCCeEEEEeecccc-ccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCC
Q 005240 31 AKINFVSWSPDGKRIAFSVRVDEE-DNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSR 109 (706)
Q Consensus 31 ~~~~~~~~SPDG~~laf~~~~~~~-~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~ 109 (706)
..+....|||.-++|+.-+..+.. ..+.+...+|.++|..+|...+-......... ....+.||-|++++|....
T Consensus 250 p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~-~WP~frWS~DdKy~Arm~~--- 325 (698)
T KOG2314|consen 250 PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYL-KWPIFRWSHDDKYFARMTG--- 325 (698)
T ss_pred CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCcc-ccceEEeccCCceeEEecc---
Confidence 357778899999988765542211 11124668899999999976654322111000 1346799999999886531
Q ss_pred CCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCCCceecCCCceEeeeeeCCCCcEE
Q 005240 110 RDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTPAVYTAVEPSPDQKYV 189 (706)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g~~~~lt~~~~~~~~~~SpDG~~i 189 (706)
.. +.+ | ....+.+++ ++.-.+ ..+..+.|||.+..|
T Consensus 326 ~s------------isI-----------y----------------Etpsf~lld--~Kslki---~gIr~FswsP~~~ll 361 (698)
T KOG2314|consen 326 NS------------ISI-----------Y----------------ETPSFMLLD--KKSLKI---SGIRDFSWSPTSNLL 361 (698)
T ss_pred ce------------EEE-----------E----------------ecCceeeec--ccccCC---ccccCcccCCCcceE
Confidence 00 000 0 001122222 222222 367789999999999
Q ss_pred EEEeeccCcccccccccccceEEEEecCCCee-EEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCC
Q 005240 190 LITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDA 268 (706)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~ 268 (706)
||-....... +.++-+..+.++.. |...-.. .....+.|..+|.. |.+-.+.-....
T Consensus 362 AYwtpe~~~~--------parvtL~evPs~~~iRt~nlfn-------------VsDckLhWQk~gdy-LcvkvdR~tK~~ 419 (698)
T KOG2314|consen 362 AYWTPETNNI--------PARVTLMEVPSKREIRTKNLFN-------------VSDCKLHWQKSGDY-LCVKVDRHTKSK 419 (698)
T ss_pred EEEcccccCC--------cceEEEEecCccceeeecccee-------------eeccEEEeccCCcE-EEEEEEeecccc
Confidence 9987654322 35666666664432 2110011 01226789999998 655443311111
Q ss_pred ccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEee-ccccceEEEEEcCCCCCCCceee--ecCc
Q 005240 269 NVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETW-YKTSQTRTWLVCPGSKDVAPRVL--FDRV 345 (706)
Q Consensus 269 ~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~-~~~~~~~l~~~d~~~~~~~~~~l--~~~~ 345 (706)
......+-.||.++- -.-+.........+-.++|-|.|..++..+. ......++|.+.... +++.++ ++..
T Consensus 420 ~~g~f~n~eIfrire----KdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~--~~~~lVk~~dk~ 493 (698)
T KOG2314|consen 420 VKGQFSNLEIFRIRE----KDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNI--KKPSLVKELDKK 493 (698)
T ss_pred ccceEeeEEEEEeec----cCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCC--Cchhhhhhhccc
Confidence 001111124555543 1222333345667788999999988876653 223455677776544 345554 2222
Q ss_pred ccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeeecccchhhhhhhhhh
Q 005240 346 FENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVAL 425 (706)
Q Consensus 346 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~ 425 (706)
.. ..+.|||.|++++...... .+..|.-+|.+-...+.+-..+.
T Consensus 494 ~~--------N~vfwsPkG~fvvva~l~s------------------~~g~l~F~D~~~a~~k~~~~~eh---------- 537 (698)
T KOG2314|consen 494 FA--------NTVFWSPKGRFVVVAALVS------------------RRGDLEFYDTDYADLKDTASPEH---------- 537 (698)
T ss_pred cc--------ceEEEcCCCcEEEEEEecc------------------cccceEEEecchhhhhhccCccc----------
Confidence 11 1367999999998876431 11235556654322222211111
Q ss_pred ccCCCceecccCCCEEEEEEecC
Q 005240 426 VFGQGEEDINLNQLKILTSKESK 448 (706)
Q Consensus 426 ~~~~~~~~~s~Dg~~l~~~~~~~ 448 (706)
.......|.|.|++++...+..
T Consensus 538 -~~at~veWDPtGRYvvT~ss~w 559 (698)
T KOG2314|consen 538 -FAATEVEWDPTGRYVVTSSSSW 559 (698)
T ss_pred -cccccceECCCCCEEEEeeehh
Confidence 1233578999999888665444
|
|
| >KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=5.1e-08 Score=92.09 Aligned_cols=182 Identities=16% Similarity=0.148 Sum_probs=125.5
Q ss_pred ceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHH-CCeEEE
Q 005240 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA-RRFAVL 559 (706)
Q Consensus 481 ~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~G~~v~ 559 (706)
..+.+..++..|..+....+.|+.. ..++|+|.||.-... + ....+...|.. .++.|+
T Consensus 34 ~v~v~~~~t~rgn~~~~~y~~~~~~------~~~~lly~hGNa~Dl------------g---q~~~~~~~l~~~ln~nv~ 92 (258)
T KOG1552|consen 34 FVEVFKVKTSRGNEIVCMYVRPPEA------AHPTLLYSHGNAADL------------G---QMVELFKELSIFLNCNVV 92 (258)
T ss_pred ccceEEeecCCCCEEEEEEEcCccc------cceEEEEcCCcccch------------H---HHHHHHHHHhhcccceEE
Confidence 5566777777788888888888763 258999999952110 0 00122233433 688998
Q ss_pred EcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCCC
Q 005240 560 AGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNK 639 (706)
Q Consensus 560 ~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d~ 639 (706)
. ..++|||.+.... .-....+|+.++.+||++..- .+++|++||+|+|..-++.++++.| .+|+|+.+|+.+.
T Consensus 93 ~---~DYSGyG~S~G~p-sE~n~y~Di~avye~Lr~~~g-~~~~Iil~G~SiGt~~tv~Lasr~~--~~alVL~SPf~S~ 165 (258)
T KOG1552|consen 93 S---YDYSGYGRSSGKP-SERNLYADIKAVYEWLRNRYG-SPERIILYGQSIGTVPTVDLASRYP--LAAVVLHSPFTSG 165 (258)
T ss_pred E---EecccccccCCCc-ccccchhhHHHHHHHHHhhcC-CCceEEEEEecCCchhhhhHhhcCC--cceEEEeccchhh
Confidence 8 4555777775432 223578999999999999754 6789999999999999999999997 9999999998652
Q ss_pred C--CCC-----cc---c---------------------------hHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHH
Q 005240 640 T--LTP-----FG---F---------------------------QAERFFDALKGHGALSRLVLLPFEHHVYAARENVMH 682 (706)
Q Consensus 640 ~--~~~-----~~---~---------------------------~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~ 682 (706)
. ..| +. | .+.+++++++.. ++-++..|++|.... ...+
T Consensus 166 ~rv~~~~~~~~~~~d~f~~i~kI~~i~~PVLiiHgtdDevv~~sHg~~Lye~~k~~---~epl~v~g~gH~~~~--~~~~ 240 (258)
T KOG1552|consen 166 MRVAFPDTKTTYCFDAFPNIEKISKITCPVLIIHGTDDEVVDFSHGKALYERCKEK---VEPLWVKGAGHNDIE--LYPE 240 (258)
T ss_pred hhhhccCcceEEeeccccccCcceeccCCEEEEecccCceecccccHHHHHhcccc---CCCcEEecCCCcccc--cCHH
Confidence 2 111 00 0 122888887764 566788889997542 2346
Q ss_pred HHHHHHHHHHHHh
Q 005240 683 VIWETDRWLQKYC 695 (706)
Q Consensus 683 ~~~~~~~f~~~~l 695 (706)
..+.+.+|+..-+
T Consensus 241 yi~~l~~f~~~~~ 253 (258)
T KOG1552|consen 241 YIEHLRRFISSVL 253 (258)
T ss_pred HHHHHHHHHHHhc
Confidence 6677777776543
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.86 E-value=4.7e-07 Score=86.48 Aligned_cols=194 Identities=13% Similarity=0.145 Sum_probs=105.2
Q ss_pred eeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEE
Q 005240 179 AVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLY 258 (706)
Q Consensus 179 ~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~ 258 (706)
++-..-.+++|+-.+.. ..|.+|++.|..+..+-..... ....+.||||+. |+
T Consensus 192 ~iGiA~~~k~imsas~d-------------t~i~lw~lkGq~L~~idtnq~~-------------n~~aavSP~GRF-ia 244 (420)
T KOG2096|consen 192 NIGIAGNAKYIMSASLD-------------TKICLWDLKGQLLQSIDTNQSS-------------NYDAAVSPDGRF-IA 244 (420)
T ss_pred EEeecCCceEEEEecCC-------------CcEEEEecCCceeeeecccccc-------------ccceeeCCCCcE-EE
Confidence 45566677777644433 4899999997655544322111 225589999997 55
Q ss_pred EEEeccCCCCccccCccceeeeecCCCC-CCCC---ceE---EeecccccccceecCCCceEEEEeeccccceEEEEEcC
Q 005240 259 WVEAQDRGDANVEVSPRDIIYTQPAEPA-EGEK---PEI---LHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCP 331 (706)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~~~---~~~---l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~ 331 (706)
...... .+++|.+ -+ ..|. ..+ |..+...+..++||+++.+++..+ +++.-+||-.|+
T Consensus 245 ~~gFTp------------DVkVwE~-~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvS--kDG~wriwdtdV 309 (420)
T KOG2096|consen 245 VSGFTP------------DVKVWEP-IFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVS--KDGKWRIWDTDV 309 (420)
T ss_pred EecCCC------------CceEEEE-EeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEe--cCCcEEEeeccc
Confidence 332211 1222222 00 1232 222 344566788889999999998875 335667888776
Q ss_pred CCCC-CCceeeecCc--ccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCcee
Q 005240 332 GSKD-VAPRVLFDRV--FENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKE 408 (706)
Q Consensus 332 ~~~~-~~~~~l~~~~--~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~ 408 (706)
.=.. ..|..|-..+ .......| ..+..||.|+.++.+... .|..+...+|+..
T Consensus 310 rY~~~qDpk~Lk~g~~pl~aag~~p--~RL~lsP~g~~lA~s~gs----------------------~l~~~~se~g~~~ 365 (420)
T KOG2096|consen 310 RYEAGQDPKILKEGSAPLHAAGSEP--VRLELSPSGDSLAVSFGS----------------------DLKVFASEDGKDY 365 (420)
T ss_pred eEecCCCchHhhcCCcchhhcCCCc--eEEEeCCCCcEEEeecCC----------------------ceEEEEcccCccc
Confidence 4321 1244442221 11111111 146679999998887511 1344444455421
Q ss_pred eeecccchhhhhhhhhhccCCCceecccCCCEEEEEEecC
Q 005240 409 RIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESK 448 (706)
Q Consensus 409 ~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~ 448 (706)
.- .|.+ ....+...+|++||++++.+....
T Consensus 366 ~~--------~e~~--h~~~Is~is~~~~g~~~atcGdr~ 395 (420)
T KOG2096|consen 366 PE--------LEDI--HSTTISSISYSSDGKYIATCGDRY 395 (420)
T ss_pred hh--------HHHh--hcCceeeEEecCCCcEEeeeccee
Confidence 11 1111 011233679999999999876543
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.9e-07 Score=84.83 Aligned_cols=204 Identities=20% Similarity=0.185 Sum_probs=117.8
Q ss_pred ceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccc
Q 005240 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (706)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 85 (706)
+|-+.++-. ++-...+.... ......|||||+++++..+ ...|-.+|..+-+...--...
T Consensus 88 ~ir~wd~r~----~k~~~~i~~~~--eni~i~wsp~g~~~~~~~k----------dD~it~id~r~~~~~~~~~~~---- 147 (313)
T KOG1407|consen 88 TIRIWDIRS----GKCTARIETKG--ENINITWSPDGEYIAVGNK----------DDRITFIDARTYKIVNEEQFK---- 147 (313)
T ss_pred eEEEEEecc----CcEEEEeeccC--cceEEEEcCCCCEEEEecC----------cccEEEEEecccceeehhccc----
Confidence 456666655 55555442222 3678999999999999742 356666776544322211111
Q ss_pred cccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccC
Q 005240 86 NAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD 165 (706)
Q Consensus 86 ~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~ 165 (706)
..+....|+-++.. +|..... +.+-++..-
T Consensus 148 -~e~ne~~w~~~nd~-Fflt~Gl------------------------------------------------G~v~ILsyp 177 (313)
T KOG1407|consen 148 -FEVNEISWNNSNDL-FFLTNGL------------------------------------------------GCVEILSYP 177 (313)
T ss_pred -ceeeeeeecCCCCE-EEEecCC------------------------------------------------ceEEEEecc
Confidence 12557789966664 5543210 122222211
Q ss_pred C--CceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCC-CeeEEcccCCCCCCCCcccCccC
Q 005240 166 G--TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG-KLVRELCDLPPAEDIPVCYNSVR 241 (706)
Q Consensus 166 g--~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~l~~~~~~~~~p~~~~~~~ 241 (706)
. ..+.|... ..=-.++|+|||++++..+.+ ..+-+||++. -.+|.++..+.
T Consensus 178 sLkpv~si~AH~snCicI~f~p~GryfA~GsAD-------------AlvSLWD~~ELiC~R~isRldw------------ 232 (313)
T KOG1407|consen 178 SLKPVQSIKAHPSNCICIEFDPDGRYFATGSAD-------------ALVSLWDVDELICERCISRLDW------------ 232 (313)
T ss_pred ccccccccccCCcceEEEEECCCCceEeecccc-------------ceeeccChhHhhhheeeccccC------------
Confidence 1 12223333 233478899999999876644 3678899873 23455555543
Q ss_pred CCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccc
Q 005240 242 EGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKT 321 (706)
Q Consensus 242 ~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~ 321 (706)
.++.++||.||+. |+-. ..+. .|=+.++ ++|....-....+....++|.|....|+|+-++++
T Consensus 233 -pVRTlSFS~dg~~-lASa----SEDh--------~IDIA~v---etGd~~~eI~~~~~t~tVAWHPk~~LLAyA~ddk~ 295 (313)
T KOG1407|consen 233 -PVRTLSFSHDGRM-LASA----SEDH--------FIDIAEV---ETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDDKD 295 (313)
T ss_pred -ceEEEEeccCcce-eecc----Cccc--------eEEeEec---ccCCeEEEeeccCCceeEEecCCCceeeEEecCCC
Confidence 3779999999996 5422 1122 1334444 44433222234667788999999999999865543
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.5e-07 Score=91.62 Aligned_cols=235 Identities=11% Similarity=0.089 Sum_probs=136.2
Q ss_pred CCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCC
Q 005240 29 DGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSS 108 (706)
Q Consensus 29 ~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~ 108 (706)
....++.+.|.|--..| .+... ++.-+||.+|-+.....+=.+...- .+....++|+|+..+|.+.
T Consensus 212 s~~~I~sv~FHp~~pll-lvaG~-------d~~lrifqvDGk~N~~lqS~~l~~f----Pi~~a~f~p~G~~~i~~s~-- 277 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAPLL-LVAGL-------DGTLRIFQVDGKVNPKLQSIHLEKF----PIQKAEFAPNGHSVIFTSG-- 277 (514)
T ss_pred CcCCceEEEecCCCceE-EEecC-------CCcEEEEEecCccChhheeeeeccC----ccceeeecCCCceEEEecc--
Confidence 33468889999966555 44432 5667788777555542222122211 1556789999995455431
Q ss_pred CCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCCceecCCC-----ceEeeeee
Q 005240 109 RRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-----AVYTAVEP 182 (706)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~~~lt~~-----~~~~~~~~ 182 (706)
...-+|.+|+ +.+..++... .....+.+
T Consensus 278 ----------------------------------------------rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeV 311 (514)
T KOG2055|consen 278 ----------------------------------------------RRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEV 311 (514)
T ss_pred ----------------------------------------------cceEEEEeeccccccccccCCCCcccchhheeEe
Confidence 1146888898 5566666443 25678999
Q ss_pred CCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEe
Q 005240 183 SPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEA 262 (706)
Q Consensus 183 SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~ 262 (706)
|||++.|++....+ .|.+....+++. ++..... ..+..+.|+.||+. |+.+ .
T Consensus 312 Shd~~fia~~G~~G-------------~I~lLhakT~el--i~s~Kie-----------G~v~~~~fsSdsk~-l~~~-~ 363 (514)
T KOG2055|consen 312 SHDSNFIAIAGNNG-------------HIHLLHAKTKEL--ITSFKIE-----------GVVSDFTFSSDSKE-LLAS-G 363 (514)
T ss_pred cCCCCeEEEcccCc-------------eEEeehhhhhhh--hheeeec-----------cEEeeEEEecCCcE-EEEE-c
Confidence 99999998876553 577766665542 2211110 12458899999976 5433 1
Q ss_pred ccCCCCccccCccceeeeecCCCCCCCCceEEeeccc--ccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCcee
Q 005240 263 QDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDL--RFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRV 340 (706)
Q Consensus 263 ~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~--~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~ 340 (706)
..+.||+||+ ............+ .-..+.-|++|.+|+..+. .+...||-.+-.-....|++
T Consensus 364 -----------~~GeV~v~nl---~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~--~GiVNIYd~~s~~~s~~PkP 427 (514)
T KOG2055|consen 364 -----------GTGEVYVWNL---RQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSD--SGIVNIYDGNSCFASTNPKP 427 (514)
T ss_pred -----------CCceEEEEec---CCcceEEEEeecCccceeeeeecCCCceEEeccC--cceEEEeccchhhccCCCCc
Confidence 1225899998 2222222222233 3456677899998887652 24556666543222244555
Q ss_pred eecCcccccccCCCCCceEeccCCCEEEEee
Q 005240 341 LFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 341 l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 371 (706)
+..- .++ .-....+.|++|+..|+...
T Consensus 428 ik~~--dNL--tt~Itsl~Fn~d~qiLAiaS 454 (514)
T KOG2055|consen 428 IKTV--DNL--TTAITSLQFNHDAQILAIAS 454 (514)
T ss_pred hhhh--hhh--heeeeeeeeCcchhhhhhhh
Confidence 5211 111 11233477899999887765
|
|
| >PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A | Back alignment and domain information |
|---|
Probab=98.82 E-value=7e-08 Score=100.76 Aligned_cols=170 Identities=16% Similarity=0.128 Sum_probs=91.2
Q ss_pred CceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCC-------------------
Q 005240 512 PLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDK------------------- 572 (706)
Q Consensus 512 ~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~------------------- 572 (706)
++|+||+-||-. +....+...+..||++||+|+++..+...+....
T Consensus 99 ~~PvvIFSHGlg---------------g~R~~yS~~~~eLAS~GyVV~aieHrDgSa~~t~~~~~~~~~~~~~~~~~~~~ 163 (379)
T PF03403_consen 99 KFPVVIFSHGLG---------------GSRTSYSAICGELASHGYVVAAIEHRDGSAPATYFMRDGSGAEVEPYVVEYLE 163 (379)
T ss_dssp -EEEEEEE--TT-----------------TTTTHHHHHHHHHTT-EEEEE---SS-SSEEEE-SSHHHHHHT--------
T ss_pred CCCEEEEeCCCC---------------cchhhHHHHHHHHHhCCeEEEEeccCCCceeEEEeccCCCccccccccccccc
Confidence 499999999842 1222233567889999999999666543321000
Q ss_pred -----CC----ch------hhHHHHHHHHHHHHHHHHHc--------------------CCCCCCcEEEEEechHHHHHH
Q 005240 573 -----LP----ND------RFVEQLVSSAEAAVEEVVRR--------------------GVADPSRIAVGGHSYGAFMTA 617 (706)
Q Consensus 573 -----~~----~~------~~~~~~~~D~~~~~~~l~~~--------------------~~id~~~i~i~G~S~GG~~a~ 617 (706)
.. .. ...+.-..|+..+++.|.+. +.+|.++|+++|||+||..++
T Consensus 164 ~~~~~~~~~~~~~~~~~R~~QL~~R~~Ei~~~l~~L~~i~~G~~~~~~l~~~~~l~~~~grlD~~~i~~~GHSFGGATa~ 243 (379)
T PF03403_consen 164 EEWIPLRDFDPEEEFELRNAQLRQRVAEIQFVLDALEEINSGDPVENVLPSSFDLSQFKGRLDLSRIGLAGHSFGGATAL 243 (379)
T ss_dssp -EEEE-----GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----SS--SS-GGGGTT-EEEEEEEEEEETHHHHHHH
T ss_pred cceeccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCccCHHHHhhhcchhheeeeecCchHHHHH
Confidence 00 00 11223367777788777641 236788999999999999999
Q ss_pred HHHHhCCCceeEEEeccCCCCCC--------CCCc------cchHH-HHH--HHHHhCCCcEEEEEeCCCCccCCC----
Q 005240 618 HLLAHAPHLFCCGIARSGSYNKT--------LTPF------GFQAE-RFF--DALKGHGALSRLVLLPFEHHVYAA---- 676 (706)
Q Consensus 618 ~~~~~~p~~~~a~v~~~~~~d~~--------~~~~------~~~~~-~~~--~~l~~~~~~~~~~~~~~~~H~~~~---- 676 (706)
.++.+. .+|+|+|+..|..-.. ..|. .++.. .+. +.+...+....++.+.|..|....
T Consensus 244 ~~l~~d-~r~~~~I~LD~W~~Pl~~~~~~~i~~P~L~InSe~f~~~~~~~~~~~~~~~~~~~~~~ti~gt~H~s~sD~~l 322 (379)
T PF03403_consen 244 QALRQD-TRFKAGILLDPWMFPLGDEIYSKIPQPLLFINSESFQWWENIFRMKKVISNNKESRMLTIKGTAHLSFSDFPL 322 (379)
T ss_dssp HHHHH--TT--EEEEES---TTS-GGGGGG--S-EEEEEETTT--HHHHHHHHTT--TTS-EEEEEETT--GGGGSGGGG
T ss_pred HHHhhc-cCcceEEEeCCcccCCCcccccCCCCCEEEEECcccCChhhHHHHHHHhccCCCcEEEEECCCcCCCcchhhh
Confidence 999998 8999999998754311 1121 11111 111 123334567789999999994311
Q ss_pred --c------------cc----HHHHHHHHHHHHHHHhcc
Q 005240 677 --R------------EN----VMHVIWETDRWLQKYCLS 697 (706)
Q Consensus 677 --~------------~~----~~~~~~~~~~f~~~~l~~ 697 (706)
+ -+ .....+.+++||++||..
T Consensus 323 l~P~~l~~~~~~~g~~dp~~a~~i~~~~~l~FL~~~L~~ 361 (379)
T PF03403_consen 323 LSPWLLGKFLGLKGSIDPERALRINNRASLAFLRRHLGL 361 (379)
T ss_dssp TS-HHHHHHTTSS-SS-HHHHHHHHHHHHHHHHHHHHT-
T ss_pred hhHHHHHHHhccccCcCHHHHHHHHHHHHHHHHHHhcCC
Confidence 1 01 124456689999999874
|
|
| >TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase | Back alignment and domain information |
|---|
Probab=98.82 E-value=7.3e-08 Score=98.11 Aligned_cols=79 Identities=13% Similarity=0.043 Sum_probs=56.0
Q ss_pred HHHHHCCeEEEEcCCCCcCCCCCCCCch---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCC
Q 005240 549 LIFLARRFAVLAGPSIPIIGEGDKLPND---RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH 625 (706)
Q Consensus 549 ~~l~~~G~~v~~~~~~~~~g~g~~~~~~---~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~ 625 (706)
..+++.||.|++++.+ |+|.+.... .......+|+.++++.+ +.+++.++||||||++++.++.++|+
T Consensus 54 ~~l~~~~~~vi~~D~~---G~G~S~~~~~~~~~~~~~~~~l~~~l~~l------~~~~~~lvG~S~Gg~ia~~~a~~~p~ 124 (282)
T TIGR03343 54 GPFVDAGYRVILKDSP---GFNKSDAVVMDEQRGLVNARAVKGLMDAL------DIEKAHLVGNSMGGATALNFALEYPD 124 (282)
T ss_pred HHHHhCCCEEEEECCC---CCCCCCCCcCcccccchhHHHHHHHHHHc------CCCCeeEEEECchHHHHHHHHHhChH
Confidence 4566789999996665 455554321 11112345555544443 55799999999999999999999999
Q ss_pred ceeEEEeccCC
Q 005240 626 LFCCGIARSGS 636 (706)
Q Consensus 626 ~~~a~v~~~~~ 636 (706)
+++++|+.+|.
T Consensus 125 ~v~~lvl~~~~ 135 (282)
T TIGR03343 125 RIGKLILMGPG 135 (282)
T ss_pred hhceEEEECCC
Confidence 99999988753
|
Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself. |
| >PRK10673 acyl-CoA esterase; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.6e-07 Score=94.01 Aligned_cols=97 Identities=10% Similarity=-0.021 Sum_probs=66.0
Q ss_pred ceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCCCCc-hhhHHHHHHHHHHHHH
Q 005240 513 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPN-DRFVEQLVSSAEAAVE 591 (706)
Q Consensus 513 ~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~-~~~~~~~~~D~~~~~~ 591 (706)
.|.||++||.+.. ...+ ...+..| +.+|.|+..+.+ |+|.+... ........+|+.++++
T Consensus 16 ~~~iv~lhG~~~~-----------~~~~----~~~~~~l-~~~~~vi~~D~~---G~G~s~~~~~~~~~~~~~d~~~~l~ 76 (255)
T PRK10673 16 NSPIVLVHGLFGS-----------LDNL----GVLARDL-VNDHDIIQVDMR---NHGLSPRDPVMNYPAMAQDLLDTLD 76 (255)
T ss_pred CCCEEEECCCCCc-----------hhHH----HHHHHHH-hhCCeEEEECCC---CCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 3679999996421 0111 1223333 467888885555 45544332 2234566778888777
Q ss_pred HHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEecc
Q 005240 592 EVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARS 634 (706)
Q Consensus 592 ~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~ 634 (706)
++ ...++.++|||+||.+++.++.++|+++++++..+
T Consensus 77 ~l------~~~~~~lvGhS~Gg~va~~~a~~~~~~v~~lvli~ 113 (255)
T PRK10673 77 AL------QIEKATFIGHSMGGKAVMALTALAPDRIDKLVAID 113 (255)
T ss_pred Hc------CCCceEEEEECHHHHHHHHHHHhCHhhcceEEEEe
Confidence 65 33679999999999999999999999999998864
|
|
| >PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.8e-08 Score=112.92 Aligned_cols=134 Identities=20% Similarity=0.202 Sum_probs=86.5
Q ss_pred ccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCC-CcC
Q 005240 489 RKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSI-PII 567 (706)
Q Consensus 489 ~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~-~~~ 567 (706)
++|. +.--|+.|.....+. ++||+|++|||.+..|+. .. ..+.....++..+++|+..||| |.-
T Consensus 105 sEDC--L~LnI~~P~~~~~~~--~lPV~v~ihGG~f~~G~~---------~~--~~~~~~~~~~~~~vivVt~nYRlg~~ 169 (535)
T PF00135_consen 105 SEDC--LYLNIYTPSNASSNS--KLPVMVWIHGGGFMFGSG---------SF--PPYDGASLAASKDVIVVTINYRLGAF 169 (535)
T ss_dssp ES-----EEEEEEETSSSSTT--SEEEEEEE--STTTSSCT---------TS--GGGHTHHHHHHHTSEEEEE----HHH
T ss_pred CchH--HHHhhhhcccccccc--ccceEEEeecccccCCCc---------cc--ccccccccccCCCEEEEEeccccccc
Confidence 4566 445599999854432 599999999998754322 00 1122345567799999987876 333
Q ss_pred CCCCCCCchh-hHHHHHHHHHHHHHHHHHc--CC-CCCCcEEEEEechHHHHHHHHHHhC--CCceeEEEeccCCC
Q 005240 568 GEGDKLPNDR-FVEQLVSSAEAAVEEVVRR--GV-ADPSRIAVGGHSYGAFMTAHLLAHA--PHLFCCGIARSGSY 637 (706)
Q Consensus 568 g~g~~~~~~~-~~~~~~~D~~~~~~~l~~~--~~-id~~~i~i~G~S~GG~~a~~~~~~~--p~~~~a~v~~~~~~ 637 (706)
|+-....... .++..+.|+..|++|+++. .| -||+||-|+|+|.||..+..++..- ..+|+.+|+.+|..
T Consensus 170 Gfl~~~~~~~~~gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~~LF~raI~~SGs~ 245 (535)
T PF00135_consen 170 GFLSLGDLDAPSGNYGLLDQRLALKWVQDNIAAFGGDPDNVTLFGQSAGAASVSLLLLSPSSKGLFHRAILQSGSA 245 (535)
T ss_dssp HH-BSSSTTSHBSTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGGTTSBSEEEEES--T
T ss_pred ccccccccccCchhhhhhhhHHHHHHHHhhhhhcccCCcceeeeeecccccccceeeecccccccccccccccccc
Confidence 4321111111 2567789999999999985 33 6999999999999999998888663 35899999999943
|
Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A .... |
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.5e-07 Score=101.03 Aligned_cols=117 Identities=15% Similarity=0.177 Sum_probs=69.1
Q ss_pred ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCC
Q 005240 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (706)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~ 254 (706)
.++..+.||||+.+++-.+.+ +.|.+||..+-+..+...+. . .-+..+.|-|=|+
T Consensus 130 ~DV~Dv~Wsp~~~~lvS~s~D-------------nsViiwn~~tF~~~~vl~~H--~----------s~VKGvs~DP~Gk 184 (942)
T KOG0973|consen 130 SDVLDVNWSPDDSLLVSVSLD-------------NSVIIWNAKTFELLKVLRGH--Q----------SLVKGVSWDPIGK 184 (942)
T ss_pred CccceeccCCCccEEEEeccc-------------ceEEEEccccceeeeeeecc--c----------ccccceEECCccC
Confidence 688899999999999866654 47999998755332222221 1 1144779999998
Q ss_pred ceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeec------ccccccceecCCCceEEEEeeccccceEEEE
Q 005240 255 STLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL------DLRFRSVSWCDDSLALVNETWYKTSQTRTWL 328 (706)
Q Consensus 255 ~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~------~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~ 328 (706)
. ++-.+ + |. .|.+|... +-+-.+.++.. ...+..+.|||||++|+....-.++...+-+
T Consensus 185 y-~ASqs--d--Dr--------tikvwrt~--dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~I 249 (942)
T KOG0973|consen 185 Y-FASQS--D--DR--------TLKVWRTS--DWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAI 249 (942)
T ss_pred e-eeeec--C--Cc--------eEEEEEcc--cceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEE
Confidence 7 54331 1 11 24444431 22333444432 2346678999999999865322223333444
Q ss_pred EcC
Q 005240 329 VCP 331 (706)
Q Consensus 329 ~d~ 331 (706)
++.
T Consensus 250 ieR 252 (942)
T KOG0973|consen 250 IER 252 (942)
T ss_pred Eec
Confidence 444
|
|
| >COG2936 Predicted acyl esterases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.6e-08 Score=105.58 Aligned_cols=143 Identities=20% Similarity=0.247 Sum_probs=103.7
Q ss_pred CCceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHH--HHHHHCCe
Q 005240 479 SLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSS--LIFLARRF 556 (706)
Q Consensus 479 ~~~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~G~ 556 (706)
.+....+.++-.||+.|..-||+|.+ .+|+|+|+..+=.|+.- ... .+........ ..++++||
T Consensus 16 ~~~~~~v~V~MRDGvrL~~dIy~Pa~-----~g~~Pvll~~~~~Py~k--------~~~-~~~~~~~~~p~~~~~aa~GY 81 (563)
T COG2936 16 GYIERDVMVPMRDGVRLAADIYRPAG-----AGPLPVLLSRTRLPYRK--------RNG-TFGPQLSALPQPAWFAAQGY 81 (563)
T ss_pred ceeeeeeeEEecCCeEEEEEEEccCC-----CCCCceeEEeecccccc--------ccc-cCcchhhcccccceeecCce
Confidence 35666778888899999999999986 24689999876333321 000 0000001111 26899999
Q ss_pred EEEEcCCCCcCCCCCCCCch-hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccC
Q 005240 557 AVLAGPSIPIIGEGDKLPND-RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSG 635 (706)
Q Consensus 557 ~v~~~~~~~~~g~g~~~~~~-~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~ 635 (706)
+|+..+-|| .|.+.... .+.....+|-.+.|+|+.++++-+ .+||++|.||+|+..+++|+..|.-.||++...+
T Consensus 82 avV~qDvRG---~~~SeG~~~~~~~~E~~Dg~D~I~Wia~QpWsN-G~Vgm~G~SY~g~tq~~~Aa~~pPaLkai~p~~~ 157 (563)
T COG2936 82 AVVNQDVRG---RGGSEGVFDPESSREAEDGYDTIEWLAKQPWSN-GNVGMLGLSYLGFTQLAAAALQPPALKAIAPTEG 157 (563)
T ss_pred EEEEecccc---cccCCcccceeccccccchhHHHHHHHhCCccC-CeeeeecccHHHHHHHHHHhcCCchheeeccccc
Confidence 999866654 44444432 222357889999999999998876 7999999999999999999999999999999998
Q ss_pred CCCC
Q 005240 636 SYNK 639 (706)
Q Consensus 636 ~~d~ 639 (706)
..|.
T Consensus 158 ~~D~ 161 (563)
T COG2936 158 LVDR 161 (563)
T ss_pred cccc
Confidence 8763
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.5e-06 Score=92.14 Aligned_cols=183 Identities=18% Similarity=0.213 Sum_probs=118.6
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceee-cccCCCccccccccceEEecCCcEEEEEecCCCC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKP-LFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~-lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~ 110 (706)
....+.+||||++||.... ++ .+-++|...|-+.. .+.+.. ++..+.|+.+|+.|+..+-+
T Consensus 352 ~i~~l~YSpDgq~iaTG~e--------Dg--KVKvWn~~SgfC~vTFteHts-----~Vt~v~f~~~g~~llssSLD--- 413 (893)
T KOG0291|consen 352 RITSLAYSPDGQLIATGAE--------DG--KVKVWNTQSGFCFVTFTEHTS-----GVTAVQFTARGNVLLSSSLD--- 413 (893)
T ss_pred ceeeEEECCCCcEEEeccC--------CC--cEEEEeccCceEEEEeccCCC-----ceEEEEEEecCCEEEEeecC---
Confidence 5778899999999998653 44 44555766766542 233332 37889999999988776421
Q ss_pred CCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CC-CceecCCC--ceEeeeeeCCCC
Q 005240 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTP--AVYTAVEPSPDQ 186 (706)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g-~~~~lt~~--~~~~~~~~SpDG 186 (706)
+.+-.+|+ .. .-+.++.+ .....++..|-|
T Consensus 414 ----------------------------------------------GtVRAwDlkRYrNfRTft~P~p~QfscvavD~sG 447 (893)
T KOG0291|consen 414 ----------------------------------------------GTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSG 447 (893)
T ss_pred ----------------------------------------------CeEEeeeecccceeeeecCCCceeeeEEEEcCCC
Confidence 56666777 33 45555555 456788888889
Q ss_pred cEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCC
Q 005240 187 KYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRG 266 (706)
Q Consensus 187 ~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~ 266 (706)
..+...+.+ ..+|++|++++++...+..+. + .| +..++|+|+|.. |+-.
T Consensus 448 elV~AG~~d------------~F~IfvWS~qTGqllDiLsGH--E-gP---------Vs~l~f~~~~~~-LaS~------ 496 (893)
T KOG0291|consen 448 ELVCAGAQD------------SFEIFVWSVQTGQLLDILSGH--E-GP---------VSGLSFSPDGSL-LASG------ 496 (893)
T ss_pred CEEEeeccc------------eEEEEEEEeecCeeeehhcCC--C-Cc---------ceeeEEccccCe-EEec------
Confidence 766543332 368999999988765544432 1 11 346789999986 5522
Q ss_pred CCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEe
Q 005240 267 DANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNET 317 (706)
Q Consensus 267 ~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~ 317 (706)
.+..+|.+||+= -..++.+.| .....+..++|+|||+.|+...
T Consensus 497 ------SWDkTVRiW~if-~s~~~vEtl-~i~sdvl~vsfrPdG~elaVaT 539 (893)
T KOG0291|consen 497 ------SWDKTVRIWDIF-SSSGTVETL-EIRSDVLAVSFRPDGKELAVAT 539 (893)
T ss_pred ------cccceEEEEEee-ccCceeeeE-eeccceeEEEEcCCCCeEEEEE
Confidence 122357777761 012233333 3455667889999999999875
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.5e-07 Score=95.52 Aligned_cols=286 Identities=14% Similarity=0.100 Sum_probs=139.6
Q ss_pred cceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCc-
Q 005240 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI- 83 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~- 83 (706)
..|.+.|+.. ++ .+..++.+....+.++||||++|+-+. ....++-++|.++.+..+.......
T Consensus 58 g~vsviD~~~----~~--~v~~i~~G~~~~~i~~s~DG~~~~v~n---------~~~~~v~v~D~~tle~v~~I~~~~~~ 122 (369)
T PF02239_consen 58 GTVSVIDLAT----GK--VVATIKVGGNPRGIAVSPDGKYVYVAN---------YEPGTVSVIDAETLEPVKTIPTGGMP 122 (369)
T ss_dssp SEEEEEETTS----SS--EEEEEE-SSEEEEEEE--TTTEEEEEE---------EETTEEEEEETTT--EEEEEE--EE-
T ss_pred CeEEEEECCc----cc--EEEEEecCCCcceEEEcCCCCEEEEEe---------cCCCceeEeccccccceeeccccccc
Confidence 3577888855 43 444455777788999999999996544 2346899999988776543211110
Q ss_pred --cccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEE
Q 005240 84 --CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (706)
Q Consensus 84 --~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~ 161 (706)
.....+..+.-||+...+++... ..+++|+
T Consensus 123 ~~~~~~Rv~aIv~s~~~~~fVv~lk------------------------------------------------d~~~I~v 154 (369)
T PF02239_consen 123 VDGPESRVAAIVASPGRPEFVVNLK------------------------------------------------DTGEIWV 154 (369)
T ss_dssp TTTS---EEEEEE-SSSSEEEEEET------------------------------------------------TTTEEEE
T ss_pred ccccCCCceeEEecCCCCEEEEEEc------------------------------------------------cCCeEEE
Confidence 00111334455677765555432 2278999
Q ss_pred EccCC-Cc---eecCCCceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccC-CCCCCCCcc
Q 005240 162 GSLDG-TA---KDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDL-PPAEDIPVC 236 (706)
Q Consensus 162 ~~l~g-~~---~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~-~~~~~~p~~ 236 (706)
+|... +. +.+..+.......|+|||++++...... ..+.++|...++...+... ......+..
T Consensus 155 Vdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~s------------n~i~viD~~~~k~v~~i~~g~~p~~~~~~ 222 (369)
T PF02239_consen 155 VDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGS------------NKIAVIDTKTGKLVALIDTGKKPHPGPGA 222 (369)
T ss_dssp EETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGG------------TEEEEEETTTTEEEEEEE-SSSBEETTEE
T ss_pred EEeccccccceeeecccccccccccCcccceeeeccccc------------ceeEEEeeccceEEEEeeccccccccccc
Confidence 99733 22 2232234566789999999997765542 4788899887766554332 111100100
Q ss_pred cCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCC-ceEEeecccccccceecCCCceEEE
Q 005240 237 YNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEK-PEILHKLDLRFRSVSWCDDSLALVN 315 (706)
Q Consensus 237 ~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-~~~l~~~~~~~~~~~wspDg~~l~~ 315 (706)
..++-.....|.-.+....+ +... +.+ .+.++|. ..-+ .+++... +.-.-+.-+||+++++.
T Consensus 223 --~~php~~g~vw~~~~~~~~~-~~~i-g~~---------~v~v~d~---~~wkvv~~I~~~-G~glFi~thP~s~~vwv 285 (369)
T PF02239_consen 223 --NFPHPGFGPVWATSGLGYFA-IPLI-GTD---------PVSVHDD---YAWKVVKTIPTQ-GGGLFIKTHPDSRYVWV 285 (369)
T ss_dssp --EEEETTTEEEEEEEBSSSSE-EEEE-E-----------TTT-STT---TBTSEEEEEE-S-SSS--EE--TT-SEEEE
T ss_pred --cccCCCcceEEeecccccee-cccc-cCC---------ccccchh---hcCeEEEEEECC-CCcceeecCCCCccEEe
Confidence 00011112345433322011 1111 111 1222333 2222 2334332 22255677999999988
Q ss_pred EeeccccceEEEEEcCCCCCCCceeeecCcccccccCCC--CCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCC
Q 005240 316 ETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPG--SPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGN 393 (706)
Q Consensus 316 ~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~ 393 (706)
..........|.++|.++-+ ....+... ++ ...+.|++||++++++.-.. +
T Consensus 286 d~~~~~~~~~v~viD~~tl~-~~~~i~~~--------~~~~~~h~ef~~dG~~v~vS~~~~------------------~ 338 (369)
T PF02239_consen 286 DTFLNPDADTVQVIDKKTLK-VVKTITPG--------PGKRVVHMEFNPDGKEVWVSVWDG------------------N 338 (369)
T ss_dssp E-TT-SSHT-EEEEECCGTE-EEE-HHHH--------HT--EEEEEE-TTSSEEEEEEE--------------------T
T ss_pred eccCCCCCceEEEEECcCcc-eeEEEecc--------CCCcEeccEECCCCCEEEEEEecC------------------C
Confidence 62222235579999988831 11122111 12 23477899999999987321 0
Q ss_pred CCceeeeecCCCceeee
Q 005240 394 IPFLDLFDINTGSKERI 410 (706)
Q Consensus 394 ~~~l~~~d~~~g~~~~l 410 (706)
-.|..+|.+|.+..+.
T Consensus 339 -~~i~v~D~~Tl~~~~~ 354 (369)
T PF02239_consen 339 -GAIVVYDAKTLKEKKR 354 (369)
T ss_dssp -TEEEEEETTTTEEEEE
T ss_pred -CEEEEEECCCcEEEEE
Confidence 0466788888765443
|
... |
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.3e-06 Score=95.67 Aligned_cols=208 Identities=13% Similarity=0.117 Sum_probs=121.6
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCc--eeecccCCCccccccccceEEecCCcEEEEEecCCC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE--AKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSR 109 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~--~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~ 109 (706)
......|||||++|||+.+ ..++...+|+++++++|+ ...+. .. ...+.|++||+.|+|......
T Consensus 128 ~l~~~~~Spdg~~la~~~d-----~~G~E~~~l~v~d~~tg~~l~~~i~---~~-----~~~~~w~~D~~~~~y~~~~~~ 194 (686)
T PRK10115 128 TLGGMAITPDNTIMALAED-----FLSRRQYGIRFRNLETGNWYPELLD---NV-----EPSFVWANDSWTFYYVRKHPV 194 (686)
T ss_pred EEeEEEECCCCCEEEEEec-----CCCcEEEEEEEEECCCCCCCCcccc---Cc-----ceEEEEeeCCCEEEEEEecCC
Confidence 3556789999999999974 334667889999999887 33332 11 135899999999998864211
Q ss_pred CCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CC--CceecCCC--ceEe-eeeeC
Q 005240 110 RDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG--TAKDFGTP--AVYT-AVEPS 183 (706)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g--~~~~lt~~--~~~~-~~~~S 183 (706)
.. ...+||+.++ ++ +.+.|... .... ....+
T Consensus 195 ~~-------------------------------------------~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s 231 (686)
T PRK10115 195 TL-------------------------------------------LPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKT 231 (686)
T ss_pred CC-------------------------------------------CCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEc
Confidence 00 1168999999 66 44555443 2122 33345
Q ss_pred CCCcEEEEEeeccCcccccccccccceEEEEecC--CCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEE
Q 005240 184 PDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD--GKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVE 261 (706)
Q Consensus 184 pDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~ 261 (706)
.|++++++...... .+++++++.+ .++.+.+...... . .+.....+.. +++..
T Consensus 232 ~d~~~l~i~~~~~~----------~~~~~l~~~~~~~~~~~~~~~~~~~-------------~-~~~~~~~~~~-ly~~t 286 (686)
T PRK10115 232 TSKHYVVIHLASAT----------TSEVLLLDAELADAEPFVFLPRRKD-------------H-EYSLDHYQHR-FYLRS 286 (686)
T ss_pred CCCCEEEEEEECCc----------cccEEEEECcCCCCCceEEEECCCC-------------C-EEEEEeCCCE-EEEEE
Confidence 59999876555432 3577887753 2222322222111 0 1122222333 66665
Q ss_pred eccCCCCccccCccceeeeecCCCCCCCCceEEeec--ccccccceecCCCceEEEEeeccccceEEEEEcCCC
Q 005240 262 AQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL--DLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (706)
Q Consensus 262 ~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~--~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~ 333 (706)
+.+.. +..|+.++++ +.++.+.|... ...+..+.|+. ..|++.... .+..+|+.+++.+
T Consensus 287 n~~~~--------~~~l~~~~~~--~~~~~~~l~~~~~~~~i~~~~~~~--~~l~~~~~~-~g~~~l~~~~~~~ 347 (686)
T PRK10115 287 NRHGK--------NFGLYRTRVR--DEQQWEELIPPRENIMLEGFTLFT--DWLVVEERQ-RGLTSLRQINRKT 347 (686)
T ss_pred cCCCC--------CceEEEecCC--CcccCeEEECCCCCCEEEEEEEEC--CEEEEEEEe-CCEEEEEEEcCCC
Confidence 44221 2246676762 13455666544 34667777773 466665433 4677899999875
|
|
| >KOG3043 consensus Predicted hydrolase related to dienelactone hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.7e-08 Score=92.43 Aligned_cols=148 Identities=18% Similarity=0.215 Sum_probs=103.5
Q ss_pred hHHHHHHHCCeEEEEcCCCCcCCCCCC---CCchhhHH-----HHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHH
Q 005240 546 TSSLIFLARRFAVLAGPSIPIIGEGDK---LPNDRFVE-----QLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTA 617 (706)
Q Consensus 546 ~~~~~l~~~G~~v~~~~~~~~~g~g~~---~~~~~~~~-----~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~ 617 (706)
..+..++..||.|+.|+...+..+..+ .....|++ ....|+...++||+.++ ++.+||++|+|+||-.+.
T Consensus 58 ~~Adk~A~~Gy~v~vPD~~~Gdp~~~~~~~~~~~~w~~~~~~~~~~~~i~~v~k~lk~~g--~~kkIGv~GfCwGak~vv 135 (242)
T KOG3043|consen 58 EGADKVALNGYTVLVPDFFRGDPWSPSLQKSERPEWMKGHSPPKIWKDITAVVKWLKNHG--DSKKIGVVGFCWGAKVVV 135 (242)
T ss_pred HHHHHHhcCCcEEEcchhhcCCCCCCCCChhhhHHHHhcCCcccchhHHHHHHHHHHHcC--CcceeeEEEEeecceEEE
Confidence 456677789999999888754332222 11223433 45789999999999665 468999999999999999
Q ss_pred HHHHhCCCceeEEEeccCCCCCC------CCCccc---------hH---HHHHHHHHhCC-CcEEEEEeCCCCccCCC--
Q 005240 618 HLLAHAPHLFCCGIARSGSYNKT------LTPFGF---------QA---ERFFDALKGHG-ALSRLVLLPFEHHVYAA-- 676 (706)
Q Consensus 618 ~~~~~~p~~~~a~v~~~~~~d~~------~~~~~~---------~~---~~~~~~l~~~~-~~~~~~~~~~~~H~~~~-- 676 (706)
.+....| .|.|+++..|..-.. -.|..+ .. .++-++|+... ...++.+|+|.+|+|..
T Consensus 136 ~~~~~~~-~f~a~v~~hps~~d~~D~~~vk~Pilfl~ae~D~~~p~~~v~~~ee~lk~~~~~~~~v~~f~g~~HGf~~~r 214 (242)
T KOG3043|consen 136 TLSAKDP-EFDAGVSFHPSFVDSADIANVKAPILFLFAELDEDVPPKDVKAWEEKLKENPAVGSQVKTFSGVGHGFVARR 214 (242)
T ss_pred Eeeccch-hheeeeEecCCcCChhHHhcCCCCEEEEeecccccCCHHHHHHHHHHHhcCcccceeEEEcCCccchhhhhc
Confidence 9999886 899999998865322 123221 11 14555555543 23579999999999973
Q ss_pred -----cc---cHHHHHHHHHHHHHHHhc
Q 005240 677 -----RE---NVMHVIWETDRWLQKYCL 696 (706)
Q Consensus 677 -----~~---~~~~~~~~~~~f~~~~l~ 696 (706)
++ ...+.++.++.||++||.
T Consensus 215 ~~~~~Ped~~~~eea~~~~~~Wf~~y~~ 242 (242)
T KOG3043|consen 215 ANISSPEDKKAAEEAYQRFISWFKHYLA 242 (242)
T ss_pred cCCCChhHHHHHHHHHHHHHHHHHHhhC
Confidence 11 235888999999999873
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.3e-06 Score=87.87 Aligned_cols=298 Identities=14% Similarity=0.179 Sum_probs=161.4
Q ss_pred cccceeeCCCCC-eEEEEeeccccccccCCceeEEEEEcCC--CceeecccCCC----cc--ccccccceEEecCCcEEE
Q 005240 32 KINFVSWSPDGK-RIAFSVRVDEEDNVSSCKLRVWIADAET--GEAKPLFESPD----IC--LNAVFGSFVWVNNSTLLI 102 (706)
Q Consensus 32 ~~~~~~~SPDG~-~laf~~~~~~~~~~~~~~~~l~~~d~~~--g~~~~lt~~~~----~~--~~~~~~~~~wSpDg~~l~ 102 (706)
.+..-+|+|--. .+|+.+. +....+|.+.-+. +....+.++.. .. -+..+..++|+.||..|+
T Consensus 180 ~V~~~~WnP~~~~llasg~~--------~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~La 251 (524)
T KOG0273|consen 180 EVFICAWNPLRDGLLASGSG--------DSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLA 251 (524)
T ss_pred ceEEEecCchhhhhhhccCC--------ccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEE
Confidence 456678999666 5555432 4446666654322 22111111110 01 122367899999999999
Q ss_pred EEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCC-CceecCCC-ceEeee
Q 005240 103 FTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TAKDFGTP-AVYTAV 180 (706)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g-~~~~lt~~-~~~~~~ 180 (706)
+.+.. +.+-+++.+| ....|... +.+.++
T Consensus 252 tG~~~-------------------------------------------------G~~riw~~~G~l~~tl~~HkgPI~sl 282 (524)
T KOG0273|consen 252 TGSED-------------------------------------------------GEARIWNKDGNLISTLGQHKGPIFSL 282 (524)
T ss_pred EeecC-------------------------------------------------cEEEEEecCchhhhhhhccCCceEEE
Confidence 87421 5666678878 56666666 889999
Q ss_pred eeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEE
Q 005240 181 EPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWV 260 (706)
Q Consensus 181 ~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~ 260 (706)
+|+.+|.+|+-...+ ..+.+||.-++..++.....-. | .-++.|..+... +
T Consensus 283 KWnk~G~yilS~~vD-------------~ttilwd~~~g~~~q~f~~~s~---~---------~lDVdW~~~~~F----~ 333 (524)
T KOG0273|consen 283 KWNKKGTYILSGGVD-------------GTTILWDAHTGTVKQQFEFHSA---P---------ALDVDWQSNDEF----A 333 (524)
T ss_pred EEcCCCCEEEeccCC-------------ccEEEEeccCceEEEeeeeccC---C---------ccceEEecCceE----e
Confidence 999999999855443 3788999987776654433211 0 114566655431 1
Q ss_pred EeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCcee
Q 005240 261 EAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRV 340 (706)
Q Consensus 261 ~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~ 340 (706)
. ... ...|+++-++ ...-...+..+.+.+..+.|.|-|+.|+..++ ++..+||.+...+. ...
T Consensus 334 t--s~t--------d~~i~V~kv~--~~~P~~t~~GH~g~V~alk~n~tg~LLaS~Sd--D~TlkiWs~~~~~~---~~~ 396 (524)
T KOG0273|consen 334 T--SST--------DGCIHVCKVG--EDRPVKTFIGHHGEVNALKWNPTGSLLASCSD--DGTLKIWSMGQSNS---VHD 396 (524)
T ss_pred e--cCC--------CceEEEEEec--CCCcceeeecccCceEEEEECCCCceEEEecC--CCeeEeeecCCCcc---hhh
Confidence 1 111 1123343331 12334456678889999999999998887653 35678888765442 112
Q ss_pred eecCcccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeeecccchhhhh
Q 005240 341 LFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFE 420 (706)
Q Consensus 341 l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~ 420 (706)
|.. ....++ .+.|||+|...--.- . +. +...+ .-...+..+|+..|...-.+
T Consensus 397 l~~-Hskei~------t~~wsp~g~v~~n~~----~-~~-~l~sa------s~dstV~lwdv~~gv~i~~f--------- 448 (524)
T KOG0273|consen 397 LQA-HSKEIY------TIKWSPTGPVTSNPN----M-NL-MLASA------SFDSTVKLWDVESGVPIHTL--------- 448 (524)
T ss_pred hhh-hcccee------eEeecCCCCccCCCc----C-Cc-eEEEe------ecCCeEEEEEccCCceeEee---------
Confidence 211 111111 255677765321100 0 00 00000 00113444555555432222
Q ss_pred hhhhhccCCCceecccCCCEEEEEEecCCCCcEEEEEECCCCceeE
Q 005240 421 TAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQ 466 (706)
Q Consensus 421 ~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~p~~v~~~~~~~~~~~~ 466 (706)
..+....-.++|||||++++.- +.-.-|..|+..+++..+
T Consensus 449 --~kH~~pVysvafS~~g~ylAsG----s~dg~V~iws~~~~~l~~ 488 (524)
T KOG0273|consen 449 --MKHQEPVYSVAFSPNGRYLASG----SLDGCVHIWSTKTGKLVK 488 (524)
T ss_pred --ccCCCceEEEEecCCCcEEEec----CCCCeeEeccccchheeE
Confidence 1222222357999999988853 333457788766665444
|
|
| >TIGR03611 RutD pyrimidine utilization protein D | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.9e-07 Score=93.22 Aligned_cols=99 Identities=14% Similarity=0.167 Sum_probs=65.1
Q ss_pred ceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCCCCc---hhhHHHHHHHHHHH
Q 005240 513 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPN---DRFVEQLVSSAEAA 589 (706)
Q Consensus 513 ~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~---~~~~~~~~~D~~~~ 589 (706)
.|+||++||.+.. .. .+.........||.|++.+.+ |+|.+... .....+..+|+.+.
T Consensus 13 ~~~iv~lhG~~~~-----------~~-----~~~~~~~~l~~~~~vi~~D~~---G~G~S~~~~~~~~~~~~~~~~~~~~ 73 (257)
T TIGR03611 13 APVVVLSSGLGGS-----------GS-----YWAPQLDVLTQRFHVVTYDHR---GTGRSPGELPPGYSIAHMADDVLQL 73 (257)
T ss_pred CCEEEEEcCCCcc-----------hh-----HHHHHHHHHHhccEEEEEcCC---CCCCCCCCCcccCCHHHHHHHHHHH
Confidence 4789999996311 11 111122233568999996665 44544321 12344555666665
Q ss_pred HHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCC
Q 005240 590 VEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 636 (706)
Q Consensus 590 ~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~ 636 (706)
++++ +..++.++|+||||++++.++.++|++++++|..++.
T Consensus 74 i~~~------~~~~~~l~G~S~Gg~~a~~~a~~~~~~v~~~i~~~~~ 114 (257)
T TIGR03611 74 LDAL------NIERFHFVGHALGGLIGLQLALRYPERLLSLVLINAW 114 (257)
T ss_pred HHHh------CCCcEEEEEechhHHHHHHHHHHChHHhHHheeecCC
Confidence 5543 3468999999999999999999999999998887753
|
This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067. |
| >TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.8e-07 Score=92.68 Aligned_cols=99 Identities=17% Similarity=0.108 Sum_probs=62.5
Q ss_pred eEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCCCCch----hhHHHHHHHHHHH
Q 005240 514 PCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPND----RFVEQLVSSAEAA 589 (706)
Q Consensus 514 p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~----~~~~~~~~D~~~~ 589 (706)
|+||++||.+.. ...+ ......|+ .||.|+.++.+ |+|.+.... ......+.|+
T Consensus 2 ~~vv~~hG~~~~-----------~~~~----~~~~~~L~-~~~~v~~~d~~---g~G~s~~~~~~~~~~~~~~~~~~--- 59 (251)
T TIGR03695 2 PVLVFLHGFLGS-----------GADW----QALIELLG-PHFRCLAIDLP---GHGSSQSPDEIERYDFEEAAQDI--- 59 (251)
T ss_pred CEEEEEcCCCCc-----------hhhH----HHHHHHhc-ccCeEEEEcCC---CCCCCCCCCccChhhHHHHHHHH---
Confidence 578999995321 0111 12334455 89999986665 445443211 1122223331
Q ss_pred HHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCC
Q 005240 590 VEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 636 (706)
Q Consensus 590 ~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~ 636 (706)
+..+.+. .+.+++.++|||+||++++.++.++|+.++++++.++.
T Consensus 60 ~~~~~~~--~~~~~~~l~G~S~Gg~ia~~~a~~~~~~v~~lil~~~~ 104 (251)
T TIGR03695 60 LATLLDQ--LGIEPFFLVGYSMGGRIALYYALQYPERVQGLILESGS 104 (251)
T ss_pred HHHHHHH--cCCCeEEEEEeccHHHHHHHHHHhCchheeeeEEecCC
Confidence 3333332 24578999999999999999999999999999888764
|
This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase. |
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.6e-06 Score=93.92 Aligned_cols=197 Identities=12% Similarity=0.123 Sum_probs=124.0
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEc-CCCceeecccCCCccccccccceEEecCCcEEEEEecCCCC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADA-ETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~-~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~ 110 (706)
.+...+|||||+.|+-.+ ....|+++|+ +.+...+...+... .+..+.|+|+|+.|+..+.+
T Consensus 205 ~v~~~~fs~d~~~l~s~s----------~D~tiriwd~~~~~~~~~~l~gH~~----~v~~~~f~p~g~~i~Sgs~D--- 267 (456)
T KOG0266|consen 205 GVSDVAFSPDGSYLLSGS----------DDKTLRIWDLKDDGRNLKTLKGHST----YVTSVAFSPDGNLLVSGSDD--- 267 (456)
T ss_pred ceeeeEECCCCcEEEEec----------CCceEEEeeccCCCeEEEEecCCCC----ceEEEEecCCCCEEEEecCC---
Confidence 688999999999877654 3367888887 44455444332222 26789999999776665421
Q ss_pred CCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCCcee-cCCC-ceEeeeeeCCCCc
Q 005240 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKD-FGTP-AVYTAVEPSPDQK 187 (706)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~~~-lt~~-~~~~~~~~SpDG~ 187 (706)
..+.++++ +|++.+ |... ..+..+++++||+
T Consensus 268 ----------------------------------------------~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~ 301 (456)
T KOG0266|consen 268 ----------------------------------------------GTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGN 301 (456)
T ss_pred ----------------------------------------------CcEEEEeccCCeEEEeeeccCCceEEEEECCCCC
Confidence 46777788 455554 4444 7889999999999
Q ss_pred EEEEEeeccCcccccccccccceEEEEecCCCeeE--EcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccC
Q 005240 188 YVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR--ELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDR 265 (706)
Q Consensus 188 ~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~ 265 (706)
.|+..+.+ ..|.+||+.++..+ .......... | ...+.|+|+++. |+.. .
T Consensus 302 ~l~s~s~d-------------~~i~vwd~~~~~~~~~~~~~~~~~~~-~---------~~~~~fsp~~~~-ll~~-~--- 353 (456)
T KOG0266|consen 302 LLVSASYD-------------GTIRVWDLETGSKLCLKLLSGAENSA-P---------VTSVQFSPNGKY-LLSA-S--- 353 (456)
T ss_pred EEEEcCCC-------------ccEEEEECCCCceeeeecccCCCCCC-c---------eeEEEECCCCcE-EEEe-c---
Confidence 99866432 48999999987743 2222111111 2 346799999986 4322 1
Q ss_pred CCCccccCccceeeeecCCCCCCC-CceEEeecc---cccccceecCCCceEEEEeeccccceEEEEEcCCCC
Q 005240 266 GDANVEVSPRDIIYTQPAEPAEGE-KPEILHKLD---LRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK 334 (706)
Q Consensus 266 ~~~~~~~~~~~~l~~~d~~~~~~~-~~~~l~~~~---~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~ 334 (706)
....+.+||+ ..+ .+....... .....+..+++|+.++..+. ...|+.+|+.+.
T Consensus 354 --------~d~~~~~w~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~----d~~v~~~~~~s~ 411 (456)
T KOG0266|consen 354 --------LDRTLKLWDL---RSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSE----DGSVYVWDSSSG 411 (456)
T ss_pred --------CCCeEEEEEc---cCCcceeeecccCCcceeEecccccCCCCeEEEEeC----CceEEEEeCCcc
Confidence 1124667777 333 233333222 23445566888998887652 235788888773
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.8e-07 Score=98.39 Aligned_cols=209 Identities=15% Similarity=0.155 Sum_probs=135.4
Q ss_pred CCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEe
Q 005240 16 DSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWV 95 (706)
Q Consensus 16 ~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wS 95 (706)
..++..+.+.++.. .+...+||||-+.|.-.+. +....||.++.. ....+..+.. ..+-.++|+
T Consensus 439 ~~~~~~~~L~GH~G--PVyg~sFsPd~rfLlScSE--------D~svRLWsl~t~--s~~V~y~GH~----~PVwdV~F~ 502 (707)
T KOG0263|consen 439 DSSGTSRTLYGHSG--PVYGCSFSPDRRFLLSCSE--------DSSVRLWSLDTW--SCLVIYKGHL----APVWDVQFA 502 (707)
T ss_pred cCCceeEEeecCCC--ceeeeeecccccceeeccC--------Ccceeeeecccc--eeEEEecCCC----cceeeEEec
Confidence 34455555554333 4888999999999977653 566778877643 3333332221 125677899
Q ss_pred cCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCCCceecCCC-
Q 005240 96 NNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTP- 174 (706)
Q Consensus 96 pDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g~~~~lt~~- 174 (706)
|-|-+++..+.+ ...+||..|- ..+.++..+
T Consensus 503 P~GyYFatas~D-----------------------------------------------~tArLWs~d~-~~PlRifagh 534 (707)
T KOG0263|consen 503 PRGYYFATASHD-----------------------------------------------QTARLWSTDH-NKPLRIFAGH 534 (707)
T ss_pred CCceEEEecCCC-----------------------------------------------ceeeeeeccc-CCchhhhccc
Confidence 999665543211 2256776654 245555555
Q ss_pred -ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCC
Q 005240 175 -AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADK 253 (706)
Q Consensus 175 -~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg 253 (706)
.++.++.|.|++.+++-.+.+ ..+.+||+.++..+++..+.- .| +..++|||+|
T Consensus 535 lsDV~cv~FHPNs~Y~aTGSsD-------------~tVRlWDv~~G~~VRiF~GH~---~~---------V~al~~Sp~G 589 (707)
T KOG0263|consen 535 LSDVDCVSFHPNSNYVATGSSD-------------RTVRLWDVSTGNSVRIFTGHK---GP---------VTALAFSPCG 589 (707)
T ss_pred ccccceEEECCcccccccCCCC-------------ceEEEEEcCCCcEEEEecCCC---Cc---------eEEEEEcCCC
Confidence 788899999999999754332 479999999766666654421 12 4478999999
Q ss_pred CceEEEEEeccCCCCccccCccceeeeecCCCCCCCCc-eEEeecccccccceecCCCceEEEEeeccccceEEEEEcCC
Q 005240 254 PSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP-EILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPG 332 (706)
Q Consensus 254 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~-~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~ 332 (706)
+. |+- ++.. ..|.+||+ .++.+ .++..+.+.+.++.||.||..|+.... +...+|| |+.
T Consensus 590 r~-LaS-----g~ed-------~~I~iWDl---~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~--DnsV~lW--D~~ 649 (707)
T KOG0263|consen 590 RY-LAS-----GDED-------GLIKIWDL---ANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGA--DNSVRLW--DLT 649 (707)
T ss_pred ce-Eee-----cccC-------CcEEEEEc---CCCcchhhhhcccCceeEEEEecCCCEEEecCC--CCeEEEE--Ech
Confidence 97 552 1222 24889999 56554 455667888999999999998887542 2344555 544
Q ss_pred C
Q 005240 333 S 333 (706)
Q Consensus 333 ~ 333 (706)
.
T Consensus 650 ~ 650 (707)
T KOG0263|consen 650 K 650 (707)
T ss_pred h
Confidence 3
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.1e-05 Score=73.91 Aligned_cols=198 Identities=16% Similarity=0.223 Sum_probs=114.3
Q ss_pred cccceeeCCC-CCeEEEEeeccccccccCCceeEEEEEcCCCc---eeecccCCCccccccccceEEecCCcEEEEEecC
Q 005240 32 KINFVSWSPD-GKRIAFSVRVDEEDNVSSCKLRVWIADAETGE---AKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPS 107 (706)
Q Consensus 32 ~~~~~~~SPD-G~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~---~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~ 107 (706)
++..++|+|- |..||. . .....|.+++..++. .+.++... -...+++++|||.|++|+..+-+
T Consensus 16 r~W~~awhp~~g~ilAs-c---------g~Dk~vriw~~~~~~s~~ck~vld~~---hkrsVRsvAwsp~g~~La~aSFD 82 (312)
T KOG0645|consen 16 RVWSVAWHPGKGVILAS-C---------GTDKAVRIWSTSSGDSWTCKTVLDDG---HKRSVRSVAWSPHGRYLASASFD 82 (312)
T ss_pred cEEEEEeccCCceEEEe-e---------cCCceEEEEecCCCCcEEEEEecccc---chheeeeeeecCCCcEEEEeecc
Confidence 5899999997 665544 3 223556666665332 23232211 12348899999999999887532
Q ss_pred CCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCC--CceecCCC--ceEeeeeeC
Q 005240 108 SRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG--TAKDFGTP--AVYTAVEPS 183 (706)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g--~~~~lt~~--~~~~~~~~S 183 (706)
.. .-||.- -++ +.....++ ..+..++||
T Consensus 83 ~t-----------------------------------------------~~Iw~k-~~~efecv~~lEGHEnEVK~Vaws 114 (312)
T KOG0645|consen 83 AT-----------------------------------------------VVIWKK-EDGEFECVATLEGHENEVKCVAWS 114 (312)
T ss_pred ce-----------------------------------------------EEEeec-CCCceeEEeeeeccccceeEEEEc
Confidence 11 122211 133 22222233 678899999
Q ss_pred CCCcEEEEEeeccCcccccccccccceEEEEecCCC-eeE---EcccCCCCCCCCcccCccCCCCcceeeecCCCceEEE
Q 005240 184 PDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK-LVR---ELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYW 259 (706)
Q Consensus 184 pDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~---~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~ 259 (706)
++|.+||.-+.. ..+++|.++.. +.. .|..+. .-+....|.|... |.+
T Consensus 115 ~sG~~LATCSRD-------------KSVWiWe~deddEfec~aVL~~Ht-------------qDVK~V~WHPt~d--lL~ 166 (312)
T KOG0645|consen 115 ASGNYLATCSRD-------------KSVWIWEIDEDDEFECIAVLQEHT-------------QDVKHVIWHPTED--LLF 166 (312)
T ss_pred CCCCEEEEeeCC-------------CeEEEEEecCCCcEEEEeeecccc-------------ccccEEEEcCCcc--eeE
Confidence 999999976654 37899988833 222 122211 1144678998665 443
Q ss_pred EEeccCCCCccccCccceeeeecCCCCCCCC---ceEEeecccccccceecCCCceEEEEeeccccceEEEE--EcCCC
Q 005240 260 VEAQDRGDANVEVSPRDIIYTQPAEPAEGEK---PEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWL--VCPGS 333 (706)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~---~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~--~d~~~ 333 (706)
...-++ .|.++.-+ +++. ...|.....-+..+.|.+.|.+++..++ ++..+||+ .++..
T Consensus 167 S~SYDn-----------TIk~~~~~--~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sd--D~tv~Iw~~~~~~~~ 230 (312)
T KOG0645|consen 167 SCSYDN-----------TIKVYRDE--DDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSD--DGTVSIWRLYTDLSG 230 (312)
T ss_pred EeccCC-----------eEEEEeec--CCCCeeEEEEecCccceEEEEEecCCCceEEEecC--CcceEeeeeccCcch
Confidence 322111 23333331 1221 3345445557888899999999987653 36778888 55554
|
|
| >TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.6e-07 Score=91.71 Aligned_cols=75 Identities=21% Similarity=0.229 Sum_probs=53.2
Q ss_pred HHCCeEEEEcCCCCcCCCCCCCCc--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeE
Q 005240 552 LARRFAVLAGPSIPIIGEGDKLPN--DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCC 629 (706)
Q Consensus 552 ~~~G~~v~~~~~~~~~g~g~~~~~--~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a 629 (706)
.+.||.|+..+.+ |+|.+... ....+...+|+...++.+ +.+++.++|||+||++++.++.++|+++++
T Consensus 36 l~~~~~v~~~d~~---G~G~s~~~~~~~~~~~~~~~~~~~i~~~------~~~~v~liG~S~Gg~~a~~~a~~~p~~v~~ 106 (251)
T TIGR02427 36 LTPDFRVLRYDKR---GHGLSDAPEGPYSIEDLADDVLALLDHL------GIERAVFCGLSLGGLIAQGLAARRPDRVRA 106 (251)
T ss_pred hhcccEEEEecCC---CCCCCCCCCCCCCHHHHHHHHHHHHHHh------CCCceEEEEeCchHHHHHHHHHHCHHHhHH
Confidence 4579999986665 44444222 123445556665555543 346899999999999999999999999998
Q ss_pred EEeccC
Q 005240 630 GIARSG 635 (706)
Q Consensus 630 ~v~~~~ 635 (706)
+++.++
T Consensus 107 li~~~~ 112 (251)
T TIGR02427 107 LVLSNT 112 (251)
T ss_pred HhhccC
Confidence 887764
|
Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate. |
| >PLN02824 hydrolase, alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=98.70 E-value=9.5e-07 Score=90.50 Aligned_cols=98 Identities=15% Similarity=0.058 Sum_probs=65.4
Q ss_pred eEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCCCCch---------hhHHHHHH
Q 005240 514 PCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPND---------RFVEQLVS 584 (706)
Q Consensus 514 p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~---------~~~~~~~~ 584 (706)
|.||++||.+..+ ..| ......|+.. |.|++++.+ |+|.+.... ...++..+
T Consensus 30 ~~vlllHG~~~~~-----------~~w----~~~~~~L~~~-~~vi~~Dlp---G~G~S~~~~~~~~~~~~~~~~~~~a~ 90 (294)
T PLN02824 30 PALVLVHGFGGNA-----------DHW----RKNTPVLAKS-HRVYAIDLL---GYGYSDKPNPRSAPPNSFYTFETWGE 90 (294)
T ss_pred CeEEEECCCCCCh-----------hHH----HHHHHHHHhC-CeEEEEcCC---CCCCCCCCccccccccccCCHHHHHH
Confidence 5689999964210 111 1234556655 577775554 555553321 22445566
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCC
Q 005240 585 SAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 636 (706)
Q Consensus 585 D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~ 636 (706)
|+.+.++.+ + .+++.++||||||++++.++.++|++++++|+.++.
T Consensus 91 ~l~~~l~~l---~---~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lili~~~ 136 (294)
T PLN02824 91 QLNDFCSDV---V---GDPAFVICNSVGGVVGLQAAVDAPELVRGVMLINIS 136 (294)
T ss_pred HHHHHHHHh---c---CCCeEEEEeCHHHHHHHHHHHhChhheeEEEEECCC
Confidence 666666544 2 368999999999999999999999999999998764
|
|
| >PRK10985 putative hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.9e-07 Score=96.78 Aligned_cols=132 Identities=17% Similarity=0.012 Sum_probs=81.3
Q ss_pred EEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCc
Q 005240 487 YQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPI 566 (706)
Q Consensus 487 ~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~ 566 (706)
++..||..+...+...+. .+ .+.|+||++||-+- +. ...+....+..|+++||.|+..+.+|.
T Consensus 36 ~~~~dg~~~~l~w~~~~~-~~---~~~p~vll~HG~~g-----------~~--~~~~~~~~~~~l~~~G~~v~~~d~rG~ 98 (324)
T PRK10985 36 LELPDGDFVDLAWSEDPA-QA---RHKPRLVLFHGLEG-----------SF--NSPYAHGLLEAAQKRGWLGVVMHFRGC 98 (324)
T ss_pred EECCCCCEEEEecCCCCc-cC---CCCCEEEEeCCCCC-----------CC--cCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 455678665443322211 11 12589999998531 10 111112355678899999999777754
Q ss_pred CCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCc--eeEEEeccCCCC
Q 005240 567 IGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHL--FCCGIARSGSYN 638 (706)
Q Consensus 567 ~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~--~~a~v~~~~~~d 638 (706)
.+..... ...+......|+..+++++.++. ...++.++||||||.+++.++.++++. ++++++.++.++
T Consensus 99 g~~~~~~-~~~~~~~~~~D~~~~i~~l~~~~--~~~~~~~vG~S~GG~i~~~~~~~~~~~~~~~~~v~i~~p~~ 169 (324)
T PRK10985 99 SGEPNRL-HRIYHSGETEDARFFLRWLQREF--GHVPTAAVGYSLGGNMLACLLAKEGDDLPLDAAVIVSAPLM 169 (324)
T ss_pred CCCccCC-cceECCCchHHHHHHHHHHHHhC--CCCCEEEEEecchHHHHHHHHHhhCCCCCccEEEEEcCCCC
Confidence 3221111 11111234688999999998763 236799999999999888888776543 788888877654
|
|
| >TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein | Back alignment and domain information |
|---|
Probab=98.69 E-value=6e-07 Score=91.05 Aligned_cols=98 Identities=19% Similarity=0.128 Sum_probs=63.7
Q ss_pred eEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCCCCc---hhhHHHHHHHHHHHH
Q 005240 514 PCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPN---DRFVEQLVSSAEAAV 590 (706)
Q Consensus 514 p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~---~~~~~~~~~D~~~~~ 590 (706)
|+||++||.+.. ...+ ......| +.+|.|+..+.+ |+|.+... ....+...+|+.+++
T Consensus 29 ~~vv~~hG~~~~-----------~~~~----~~~~~~l-~~~~~vi~~D~~---G~G~S~~~~~~~~~~~~~~~~l~~~i 89 (278)
T TIGR03056 29 PLLLLLHGTGAS-----------THSW----RDLMPPL-ARSFRVVAPDLP---GHGFTRAPFRFRFTLPSMAEDLSALC 89 (278)
T ss_pred CeEEEEcCCCCC-----------HHHH----HHHHHHH-hhCcEEEeecCC---CCCCCCCccccCCCHHHHHHHHHHHH
Confidence 689999995311 0111 1223333 457999986665 55655332 223455566666554
Q ss_pred HHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCC
Q 005240 591 EEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 636 (706)
Q Consensus 591 ~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~ 636 (706)
+.+ +.+++.++||||||.+++.++.+.|++++++++.++.
T Consensus 90 ~~~------~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~v~~~~~ 129 (278)
T TIGR03056 90 AAE------GLSPDGVIGHSAGAAIALRLALDGPVTPRMVVGINAA 129 (278)
T ss_pred HHc------CCCCceEEEECccHHHHHHHHHhCCcccceEEEEcCc
Confidence 432 2357899999999999999999999988888877653
|
Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity. |
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.67 E-value=6.3e-06 Score=83.99 Aligned_cols=283 Identities=11% Similarity=0.071 Sum_probs=147.0
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~ 111 (706)
.+....|||-|++|++.- ....++|-.+.. +...++ ... .+..+.+||.|++|...+.+...+
T Consensus 34 p~~~~~~SP~G~~l~~~~---------~~~V~~~~g~~~-~~l~~~---~~~----~V~~~~fSP~~kYL~tw~~~pi~~ 96 (561)
T COG5354 34 PVAYVSESPLGTYLFSEH---------AAGVECWGGPSK-AKLVRF---RHP----DVKYLDFSPNEKYLVTWSREPIIE 96 (561)
T ss_pred chhheeecCcchheehhh---------ccceEEccccch-hheeee---ecC----CceecccCcccceeeeeccCCccC
Confidence 577889999999998743 222344432221 133333 221 277889999999988776443311
Q ss_pred CCCCCCCCCCCc---eeecC-CCcccccc-----c--chhccCCchhhhhhhhcccceEEEEccCCCceecCCC----ce
Q 005240 112 PPKKTMVPLGPK---IQSNE-QKNIIISR-----M--TDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTP----AV 176 (706)
Q Consensus 112 ~~~~~~~~~~~~---~~~~~-~~~~~~~~-----~--~~~~~~~~~d~~~~~~~~~~~l~~~~l~g~~~~lt~~----~~ 176 (706)
+.....+.+.+ -.|.. .+..+... . ....+.++.+.++.++.-...|+++++++...+.... ..
T Consensus 97 -pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~lr~~g 175 (561)
T COG5354 97 -PEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNLRPVG 175 (561)
T ss_pred -hhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecCCccccCchhhccccc
Confidence 11111111110 00111 01111111 1 1123445555555555566788888875433322221 46
Q ss_pred EeeeeeCCCC--cEEEEEeeccCcccccccccccceEEEEecC-CCeeEEcccCCCCCCCCcccCccCCCCcceeeecCC
Q 005240 177 YTAVEPSPDQ--KYVLITSMHRPYSYKVPCARFSQKVQVWTTD-GKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADK 253 (706)
Q Consensus 177 ~~~~~~SpDG--~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg 253 (706)
+..+.|||-| ..|+|........ +..+.+|.+. ++.++..+-... ..-.+.|.+.|
T Consensus 176 i~dFsisP~~n~~~la~~tPEk~~k--------pa~~~i~sIp~~s~l~tk~lfk~-------------~~~qLkW~~~g 234 (561)
T COG5354 176 ILDFSISPEGNHDELAYWTPEKLNK--------PAMVRILSIPKNSVLVTKNLFKV-------------SGVQLKWQVLG 234 (561)
T ss_pred eeeEEecCCCCCceEEEEccccCCC--------CcEEEEEEccCCCeeeeeeeEee-------------cccEEEEecCC
Confidence 7889999964 4566655433221 4577777776 232222211111 12267999999
Q ss_pred CceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCC
Q 005240 254 PSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (706)
Q Consensus 254 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~ 333 (706)
+. |.+...... ......-....||++++ .....+......+.+-++.|.|++++++..+... ...+-..|+.+
T Consensus 235 ~~-ll~l~~t~~-ksnKsyfgesnLyl~~~---~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~--pa~~s~~~lr~ 307 (561)
T COG5354 235 KY-LLVLVMTHT-KSNKSYFGESNLYLLRI---TERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYM--PASVSVFDLRG 307 (561)
T ss_pred ce-EEEEEEEee-ecccceeccceEEEEee---cccccceeccccccceeeeecccCCceeEEeccc--ccceeeccccc
Confidence 98 544444332 11111112245888887 3333333224467788999999999988765332 23455566665
Q ss_pred CCCCceeeecCcccccccCCCCCceEeccCCCEEEEee
Q 005240 334 KDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 334 ~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 371 (706)
+ .+-..-..-.+ .+.|||.++++++..
T Consensus 308 N---l~~~~Pe~~rN--------T~~fsp~~r~il~ag 334 (561)
T COG5354 308 N---LRFYFPEQKRN--------TIFFSPHERYILFAG 334 (561)
T ss_pred c---eEEecCCcccc--------cccccCcccEEEEec
Confidence 2 22221111111 144789999988864
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.6e-05 Score=86.16 Aligned_cols=150 Identities=11% Similarity=0.063 Sum_probs=83.9
Q ss_pred ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeE-EcccCCCCCCCCcccCccCCCCcceeeecCC
Q 005240 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR-ELCDLPPAEDIPVCYNSVREGMRSISWRADK 253 (706)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg 253 (706)
..+..++|+|++..++++.... ..|.+||+..++.. .+.... ..+..+.|+|||
T Consensus 126 ~~V~~l~f~P~~~~iLaSgs~D------------gtVrIWDl~tg~~~~~l~~h~-------------~~V~sla~spdG 180 (493)
T PTZ00421 126 KKVGIVSFHPSAMNVLASAGAD------------MVVNVWDVERGKAVEVIKCHS-------------DQITSLEWNLDG 180 (493)
T ss_pred CcEEEEEeCcCCCCEEEEEeCC------------CEEEEEECCCCeEEEEEcCCC-------------CceEEEEEECCC
Confidence 5678999999976554444332 47999999865433 332221 224578999999
Q ss_pred CceEEEEEeccCCCCccccCccceeeeecCCCCCCCCc-eEEeeccc-ccccceecCCCceEEEEeeccccceEEEEEcC
Q 005240 254 PSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP-EILHKLDL-RFRSVSWCDDSLALVNETWYKTSQTRTWLVCP 331 (706)
Q Consensus 254 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~-~~l~~~~~-~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~ 331 (706)
+. |+.. .. ...|.+||+ ..++. ..+..+.. ......|.+++..|+...........|.++|+
T Consensus 181 ~l-Latg-s~-----------Dg~IrIwD~---rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDl 244 (493)
T PTZ00421 181 SL-LCTT-SK-----------DKKLNIIDP---RDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDT 244 (493)
T ss_pred CE-EEEe-cC-----------CCEEEEEEC---CCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeC
Confidence 85 4422 11 124788888 44443 33433322 33467899998777654322222345666676
Q ss_pred CCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEee
Q 005240 332 GSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 332 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 371 (706)
.... .+....+.+. ......+.+++|+..|+...
T Consensus 245 r~~~-~p~~~~~~d~-----~~~~~~~~~d~d~~~L~lgg 278 (493)
T PTZ00421 245 RKMA-SPYSTVDLDQ-----SSALFIPFFDEDTNLLYIGS 278 (493)
T ss_pred CCCC-CceeEeccCC-----CCceEEEEEcCCCCEEEEEE
Confidence 6532 2332222111 11222355788998776653
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.3e-06 Score=93.29 Aligned_cols=144 Identities=9% Similarity=0.021 Sum_probs=91.9
Q ss_pred ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCC
Q 005240 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (706)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~ 254 (706)
..+..+.|+|-|-+.+-.+.+ ....+|..+....-++..+..++ +.-+.|.|++.
T Consensus 494 ~PVwdV~F~P~GyYFatas~D-------------~tArLWs~d~~~PlRifaghlsD------------V~cv~FHPNs~ 548 (707)
T KOG0263|consen 494 APVWDVQFAPRGYYFATASHD-------------QTARLWSTDHNKPLRIFAGHLSD------------VDCVSFHPNSN 548 (707)
T ss_pred cceeeEEecCCceEEEecCCC-------------ceeeeeecccCCchhhhcccccc------------cceEEECCccc
Confidence 466778899998655433222 35578888866666666665543 33578999987
Q ss_pred ceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEe-ecccccccceecCCCceEEEEeeccccceEEEEEcCCC
Q 005240 255 STLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH-KLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (706)
Q Consensus 255 ~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~-~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~ 333 (706)
. ++ ..+.+. .+.+||+ .+|..++++ .+.+.+..+.+||+|++|+..+. ...|-++|+.+
T Consensus 549 Y-~a----TGSsD~--------tVRlWDv---~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~e----d~~I~iWDl~~ 608 (707)
T KOG0263|consen 549 Y-VA----TGSSDR--------TVRLWDV---STGNSVRIFTGHKGPVTALAFSPCGRYLASGDE----DGLIKIWDLAN 608 (707)
T ss_pred c-cc----cCCCCc--------eEEEEEc---CCCcEEEEecCCCCceEEEEEcCCCceEeeccc----CCcEEEEEcCC
Confidence 5 32 112222 4778888 566666654 66889999999999999997642 23466677777
Q ss_pred CCCCceeeecCcccccccCCCCCceEeccCCCEEEEee
Q 005240 334 KDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 334 ~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 371 (706)
+ .......+.-.. ...++||.||..|+...
T Consensus 609 ~--~~v~~l~~Ht~t------i~SlsFS~dg~vLasgg 638 (707)
T KOG0263|consen 609 G--SLVKQLKGHTGT------IYSLSFSRDGNVLASGG 638 (707)
T ss_pred C--cchhhhhcccCc------eeEEEEecCCCEEEecC
Confidence 4 222222222222 23488999999887754
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=4.6e-06 Score=79.10 Aligned_cols=219 Identities=14% Similarity=0.140 Sum_probs=142.2
Q ss_pred cceeEeecCCCCCCCCeeeeecCCCCC-cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCc
Q 005240 5 TGIGIHRLLPDDSLGPEKEVHGYPDGA-KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~i~~~~~~~-~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~ 83 (706)
+.-.|++|...++.|.++..+.++... ..+.-+|-+|+..|.- .|....-++|+++|+..+...+...
T Consensus 119 N~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~-----------SGD~TCalWDie~g~~~~~f~GH~g 187 (343)
T KOG0286|consen 119 NKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTG-----------SGDMTCALWDIETGQQTQVFHGHTG 187 (343)
T ss_pred ceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEec-----------CCCceEEEEEcccceEEEEecCCcc
Confidence 445788888755566655555555443 5677788887766633 4445666779999987776544332
Q ss_pred cccccccceEEec-CCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEE
Q 005240 84 CLNAVFGSFVWVN-NSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLG 162 (706)
Q Consensus 84 ~~~~~~~~~~wSp-Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~ 162 (706)
.+-.+..+| |++.++..+-+ ...+++
T Consensus 188 ----DV~slsl~p~~~ntFvSg~cD-------------------------------------------------~~aklW 214 (343)
T KOG0286|consen 188 ----DVMSLSLSPSDGNTFVSGGCD-------------------------------------------------KSAKLW 214 (343)
T ss_pred ----cEEEEecCCCCCCeEEecccc-------------------------------------------------cceeee
Confidence 266888899 88876543211 345566
Q ss_pred cc-CCCceecCCC--ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCc
Q 005240 163 SL-DGTAKDFGTP--AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNS 239 (706)
Q Consensus 163 ~l-~g~~~~lt~~--~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~ 239 (706)
|+ +|..++-..+ .++..+.|-|+|..++-.+.+ ....+||+.......+...+.
T Consensus 215 D~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD-------------~tcRlyDlRaD~~~a~ys~~~---------- 271 (343)
T KOG0286|consen 215 DVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDD-------------ATCRLYDLRADQELAVYSHDS---------- 271 (343)
T ss_pred eccCcceeEeecccccccceEEEccCCCeeeecCCC-------------ceeEEEeecCCcEEeeeccCc----------
Confidence 88 6666666555 688999999999888755543 256677776543333333221
Q ss_pred cCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeec
Q 005240 240 VREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWY 319 (706)
Q Consensus 240 ~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~ 319 (706)
...|+..++||..|+ |.|.-..+ ....+||. +.+...-.|..+..++.-+..+|||..+...+++
T Consensus 272 ~~~gitSv~FS~SGR--lLfagy~d-----------~~c~vWDt--lk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWD 336 (343)
T KOG0286|consen 272 IICGITSVAFSKSGR--LLFAGYDD-----------FTCNVWDT--LKGERVGVLAGHENRVSCLGVSPDGMAVATGSWD 336 (343)
T ss_pred ccCCceeEEEccccc--EEEeeecC-----------CceeEeec--cccceEEEeeccCCeeEEEEECCCCcEEEecchh
Confidence 113455889999998 45442211 13667776 2444455677888899999999999999987765
Q ss_pred cccceEEE
Q 005240 320 KTSQTRTW 327 (706)
Q Consensus 320 ~~~~~~l~ 327 (706)
. ..+||
T Consensus 337 s--~lriW 342 (343)
T KOG0286|consen 337 S--TLRIW 342 (343)
T ss_pred H--heeec
Confidence 3 45565
|
|
| >COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.7e-06 Score=82.84 Aligned_cols=97 Identities=23% Similarity=0.159 Sum_probs=68.2
Q ss_pred HHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCCCCC------------CCc----cc---------
Q 005240 592 EVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTL------------TPF----GF--------- 646 (706)
Q Consensus 592 ~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d~~~------------~~~----~~--------- 646 (706)
|+.+...+|+++.+|+|||+||..++.++..+|+.|.+..+.+|.+-|.- .+. .|
T Consensus 127 ~Ie~~y~~~~~~~~i~GhSlGGLfvl~aLL~~p~~F~~y~~~SPSlWw~n~~~l~~~~~~~~~~~~~i~l~iG~~e~~~~ 206 (264)
T COG2819 127 FIEARYRTNSERTAIIGHSLGGLFVLFALLTYPDCFGRYGLISPSLWWHNEAILREIESLKLLKTKRICLYIGSGELDSS 206 (264)
T ss_pred HHhcccccCcccceeeeecchhHHHHHHHhcCcchhceeeeecchhhhCCHHHhccccccccCCCcceEEEecccccCcc
Confidence 33344568999999999999999999999999999999999999754331 110 00
Q ss_pred ----------hHHHHHHHHHh-CCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 005240 647 ----------QAERFFDALKG-HGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQ 692 (706)
Q Consensus 647 ----------~~~~~~~~l~~-~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~~ 692 (706)
+..+....+++ .+....+..+|+++|+-. ....+..++.|+.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~f~~~~~~~H~~~----~~~~~~~al~~l~ 259 (264)
T COG2819 207 RSIRMAENKQEAAELSSLLEKRTGARLVFQEEPLEHHGSV----IHASLPSALRFLD 259 (264)
T ss_pred hhhhhhhHHHHHHHHHHHHhhccCCceEecccccccccch----HHHHHHHHHHhhh
Confidence 01155555666 778888889999999643 2334455555554
|
|
| >PF07224 Chlorophyllase: Chlorophyllase; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3 | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.7e-07 Score=85.71 Aligned_cols=117 Identities=17% Similarity=0.184 Sum_probs=82.9
Q ss_pred eEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCC
Q 005240 493 VPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDK 572 (706)
Q Consensus 493 ~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~ 572 (706)
-+.+..|+.|.. +|.||+|+++||=. . .+.++....+.++++||+|+++.-....+
T Consensus 31 pPkpLlI~tP~~-----~G~yPVilF~HG~~---------l------~ns~Ys~lL~HIASHGfIVVAPQl~~~~~---- 86 (307)
T PF07224_consen 31 PPKPLLIVTPSE-----AGTYPVILFLHGFN---------L------YNSFYSQLLAHIASHGFIVVAPQLYTLFP---- 86 (307)
T ss_pred CCCCeEEecCCc-----CCCccEEEEeechh---------h------hhHHHHHHHHHHhhcCeEEEechhhcccC----
Confidence 356788898876 45699999999831 1 11122344566778999999966543222
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHc--CC------CCCCcEEEEEechHHHHHHHHHHhCC-C-ceeEEEeccCCC
Q 005240 573 LPNDRFVEQLVSSAEAAVEEVVRR--GV------ADPSRIAVGGHSYGAFMTAHLLAHAP-H-LFCCGIARSGSY 637 (706)
Q Consensus 573 ~~~~~~~~~~~~D~~~~~~~l~~~--~~------id~~~i~i~G~S~GG~~a~~~~~~~p-~-~~~a~v~~~~~~ 637 (706)
....+.+++..++++||.+. .. .+-++++++|||.||..|..++..+. + .|.|+|...|+.
T Consensus 87 ----p~~~~Ei~~aa~V~~WL~~gL~~~Lp~~V~~nl~klal~GHSrGGktAFAlALg~a~~lkfsaLIGiDPV~ 157 (307)
T PF07224_consen 87 ----PDGQDEIKSAASVINWLPEGLQHVLPENVEANLSKLALSGHSRGGKTAFALALGYATSLKFSALIGIDPVA 157 (307)
T ss_pred ----CCchHHHHHHHHHHHHHHhhhhhhCCCCcccccceEEEeecCCccHHHHHHHhcccccCchhheecccccC
Confidence 12245577888899999763 11 46679999999999999999998772 2 588888888774
|
1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process |
| >KOG4178 consensus Soluble epoxide hydrolase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.9e-06 Score=82.56 Aligned_cols=100 Identities=16% Similarity=0.094 Sum_probs=77.3
Q ss_pred ceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCCCCch----hhHHHHHHHHHH
Q 005240 513 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPND----RFVEQLVSSAEA 588 (706)
Q Consensus 513 ~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~----~~~~~~~~D~~~ 588 (706)
-|+|+++||=|. .|.++. .....|+++||.|++++- +|||.+.... ........|+.+
T Consensus 44 gP~illlHGfPe-----------~wyswr----~q~~~la~~~~rviA~Dl---rGyG~Sd~P~~~~~Yt~~~l~~di~~ 105 (322)
T KOG4178|consen 44 GPIVLLLHGFPE-----------SWYSWR----HQIPGLASRGYRVIAPDL---RGYGFSDAPPHISEYTIDELVGDIVA 105 (322)
T ss_pred CCEEEEEccCCc-----------cchhhh----hhhhhhhhcceEEEecCC---CCCCCCCCCCCcceeeHHHHHHHHHH
Confidence 489999999653 344332 234568889999999544 4788776543 235567888888
Q ss_pred HHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCC
Q 005240 589 AVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 636 (706)
Q Consensus 589 ~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~ 636 (706)
.++.|- -+|+.+.||++|+.+|..++..+|+++.+.|.....
T Consensus 106 lld~Lg------~~k~~lvgHDwGaivaw~la~~~Perv~~lv~~nv~ 147 (322)
T KOG4178|consen 106 LLDHLG------LKKAFLVGHDWGAIVAWRLALFYPERVDGLVTLNVP 147 (322)
T ss_pred HHHHhc------cceeEEEeccchhHHHHHHHHhChhhcceEEEecCC
Confidence 888774 379999999999999999999999999999988754
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.9e-05 Score=75.16 Aligned_cols=249 Identities=12% Similarity=0.080 Sum_probs=136.1
Q ss_pred CcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCC
Q 005240 31 AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (706)
Q Consensus 31 ~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~ 110 (706)
..+....||.||.+||.. +-...|.+....+|..+.....+.. .+..+.|.|-+..|++.+.
T Consensus 107 DSVt~~~FshdgtlLATG----------dmsG~v~v~~~stg~~~~~~~~e~~----dieWl~WHp~a~illAG~~---- 168 (399)
T KOG0296|consen 107 DSVTCCSFSHDGTLLATG----------DMSGKVLVFKVSTGGEQWKLDQEVE----DIEWLKWHPRAHILLAGST---- 168 (399)
T ss_pred CceEEEEEccCceEEEec----------CCCccEEEEEcccCceEEEeecccC----ceEEEEecccccEEEeecC----
Confidence 369999999999999874 2224455555555544433221111 1667889998888877642
Q ss_pred CCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CC-CceecCCC-ceEeeeeeCCCCc
Q 005240 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTP-AVYTAVEPSPDQK 187 (706)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g-~~~~lt~~-~~~~~~~~SpDG~ 187 (706)
.+.+|++.+ ++ ..+.+... .....-.|.||||
T Consensus 169 ---------------------------------------------DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGK 203 (399)
T KOG0296|consen 169 ---------------------------------------------DGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGK 203 (399)
T ss_pred ---------------------------------------------CCcEEEEECCCcceeeEecCCCCCcccccccCCCc
Confidence 167999988 43 34444333 4556778999999
Q ss_pred EEEEEeeccCcccccccccccceEEEEecCCCe-eEEcccCCCCCCCCcccCcc----CCCC--cceeeecCCCceEEEE
Q 005240 188 YVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL-VRELCDLPPAEDIPVCYNSV----REGM--RSISWRADKPSTLYWV 260 (706)
Q Consensus 188 ~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~~~~~p~~~~~~----~~g~--~~~~~spdg~~~l~~~ 260 (706)
+|+-.... ..|.+|++.++. .-+++...+.+..+...+.. ..+. ..+.....+...+..+
T Consensus 204 r~~tgy~d-------------gti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~ 270 (399)
T KOG0296|consen 204 RILTGYDD-------------GTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNC 270 (399)
T ss_pred eEEEEecC-------------ceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEe
Confidence 99866654 378999998653 33343222111111111000 0000 0122222222212222
Q ss_pred EeccC---------CCCcc-------------ccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEee
Q 005240 261 EAQDR---------GDANV-------------EVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETW 318 (706)
Q Consensus 261 ~~~~~---------~~~~~-------------~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~ 318 (706)
.+... ...-. .-...++|.++|. +...+|.+-.+...+....|.+ ..+|+...
T Consensus 271 ~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~---a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c- 345 (399)
T KOG0296|consen 271 NNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDL---AASTLRHICEHEDGVTKLKWLN-TDYLLTAC- 345 (399)
T ss_pred cCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEec---ccchhheeccCCCceEEEEEcC-cchheeec-
Confidence 21000 00000 0012346888887 6667777766777788899988 55555433
Q ss_pred ccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEee
Q 005240 319 YKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 319 ~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 371 (706)
.+..|+.+|..+++ .+...-+... +...++.+|+++.++...
T Consensus 346 ---~~g~v~~wDaRtG~--l~~~y~GH~~------~Il~f~ls~~~~~vvT~s 387 (399)
T KOG0296|consen 346 ---ANGKVRQWDARTGQ--LKFTYTGHQM------GILDFALSPQKRLVVTVS 387 (399)
T ss_pred ---cCceEEeeeccccc--eEEEEecCch------heeEEEEcCCCcEEEEec
Confidence 34468889988853 2222222211 233467789988876654
|
|
| >PLN02511 hydrolase | Back alignment and domain information |
|---|
Probab=98.58 E-value=7.4e-07 Score=94.50 Aligned_cols=138 Identities=12% Similarity=0.062 Sum_probs=86.8
Q ss_pred ceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEE
Q 005240 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 560 (706)
Q Consensus 481 ~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~ 560 (706)
..+...+...||..+...++.+..-... ...|+||++||..- + +...+....+..+.+.||.|+.
T Consensus 70 ~~~re~l~~~DG~~~~ldw~~~~~~~~~--~~~p~vvllHG~~g-----------~--s~~~y~~~~~~~~~~~g~~vv~ 134 (388)
T PLN02511 70 RYRRECLRTPDGGAVALDWVSGDDRALP--ADAPVLILLPGLTG-----------G--SDDSYVRHMLLRARSKGWRVVV 134 (388)
T ss_pred ceeEEEEECCCCCEEEEEecCcccccCC--CCCCEEEEECCCCC-----------C--CCCHHHHHHHHHHHHCCCEEEE
Confidence 3344456667887777555543211111 12488999999521 1 0110111234456689999999
Q ss_pred cCCCCcCCCCCCCC--chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCc--eeEEEeccCC
Q 005240 561 GPSIPIIGEGDKLP--NDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHL--FCCGIARSGS 636 (706)
Q Consensus 561 ~~~~~~~g~g~~~~--~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~--~~a~v~~~~~ 636 (706)
.+.+| +|.+.. ...+.....+|+..+++++..+. ...++.++|+|+||.+++.++.++|+. +.+++++++.
T Consensus 135 ~d~rG---~G~s~~~~~~~~~~~~~~Dl~~~i~~l~~~~--~~~~~~lvG~SlGg~i~~~yl~~~~~~~~v~~~v~is~p 209 (388)
T PLN02511 135 FNSRG---CADSPVTTPQFYSASFTGDLRQVVDHVAGRY--PSANLYAAGWSLGANILVNYLGEEGENCPLSGAVSLCNP 209 (388)
T ss_pred EecCC---CCCCCCCCcCEEcCCchHHHHHHHHHHHHHC--CCCCEEEEEechhHHHHHHHHHhcCCCCCceEEEEECCC
Confidence 77764 444321 11223345789999999998753 235899999999999999999999886 7777766654
Q ss_pred CC
Q 005240 637 YN 638 (706)
Q Consensus 637 ~d 638 (706)
++
T Consensus 210 ~~ 211 (388)
T PLN02511 210 FD 211 (388)
T ss_pred cC
Confidence 43
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.58 E-value=0.00019 Score=69.24 Aligned_cols=265 Identities=12% Similarity=0.102 Sum_probs=141.9
Q ss_pred ceEEEEcc-CC-CceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCC
Q 005240 157 AQLVLGSL-DG-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDI 233 (706)
Q Consensus 157 ~~l~~~~l-~g-~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~ 233 (706)
..|.++|. +| +.+.+... -.+..+.|......+++.++... ..|...++...+--+...+..
T Consensus 36 Dsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d-----------~tIryLsl~dNkylRYF~GH~---- 100 (311)
T KOG1446|consen 36 DSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKED-----------DTIRYLSLHDNKYLRYFPGHK---- 100 (311)
T ss_pred CeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCC-----------CceEEEEeecCceEEEcCCCC----
Confidence 35666677 66 55555544 44556677777777777776432 467777777655444333321
Q ss_pred CcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceE
Q 005240 234 PVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLAL 313 (706)
Q Consensus 234 p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l 313 (706)
.-+-.+.-||-+.. |++. .....|.+||+ ...+-+-+.... ...-+++.|.|..+
T Consensus 101 --------~~V~sL~~sP~~d~---FlS~----------S~D~tvrLWDl---R~~~cqg~l~~~-~~pi~AfDp~GLif 155 (311)
T KOG1446|consen 101 --------KRVNSLSVSPKDDT---FLSS----------SLDKTVRLWDL---RVKKCQGLLNLS-GRPIAAFDPEGLIF 155 (311)
T ss_pred --------ceEEEEEecCCCCe---EEec----------ccCCeEEeeEe---cCCCCceEEecC-CCcceeECCCCcEE
Confidence 11235666776653 3321 11125788888 333333333222 22345789999877
Q ss_pred EEEeeccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCC
Q 005240 314 VNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGN 393 (706)
Q Consensus 314 ~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~ 393 (706)
+.... ...|.++|+..-++.|...+.-.... ...-..+.+||||++|+.+...
T Consensus 156 A~~~~----~~~IkLyD~Rs~dkgPF~tf~i~~~~---~~ew~~l~FS~dGK~iLlsT~~-------------------- 208 (311)
T KOG1446|consen 156 ALANG----SELIKLYDLRSFDKGPFTTFSITDND---EAEWTDLEFSPDGKSILLSTNA-------------------- 208 (311)
T ss_pred EEecC----CCeEEEEEecccCCCCceeEccCCCC---ccceeeeEEcCCCCEEEEEeCC--------------------
Confidence 76541 22577777766433444432211100 0111236689999999887521
Q ss_pred CCceeeeecCCCceeeeecccchhhhhhhhhhccCCCceecccCCCEEEEEEecCCCCcEEEEEECCCCceeEeecCCCC
Q 005240 394 IPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHP 473 (706)
Q Consensus 394 ~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~p~~v~~~~~~~~~~~~lt~~~~~ 473 (706)
..++++|+=+|....-+..... +.-. .....|+|||+.++-...+. .|..|++++|+..-...-+..
T Consensus 209 -s~~~~lDAf~G~~~~tfs~~~~---~~~~-----~~~a~ftPds~Fvl~gs~dg----~i~vw~~~tg~~v~~~~~~~~ 275 (311)
T KOG1446|consen 209 -SFIYLLDAFDGTVKSTFSGYPN---AGNL-----PLSATFTPDSKFVLSGSDDG----TIHVWNLETGKKVAVLRGPNG 275 (311)
T ss_pred -CcEEEEEccCCcEeeeEeeccC---CCCc-----ceeEEECCCCcEEEEecCCC----cEEEEEcCCCcEeeEecCCCC
Confidence 1356677767754332222110 0000 12578999998666544444 499999998865554443212
Q ss_pred CCCC-CCCceEEEEEEccCCeEEEEEEEecCC
Q 005240 474 YPTL-ASLQKEMIKYQRKDGVPLTATLYLPPG 504 (706)
Q Consensus 474 ~~~~-~~~~~~~~~~~~~dg~~i~~~l~~P~~ 504 (706)
.+.. ....+...++.+.+. .+- ++.|..
T Consensus 276 ~~~~~~~fnP~~~mf~sa~s-~l~--fw~p~~ 304 (311)
T KOG1446|consen 276 GPVSCVRFNPRYAMFVSASS-NLV--FWLPDE 304 (311)
T ss_pred CCccccccCCceeeeeecCc-eEE--EEeccc
Confidence 2221 235667777776553 333 455653
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.58 E-value=9.3e-06 Score=85.23 Aligned_cols=222 Identities=12% Similarity=0.170 Sum_probs=136.3
Q ss_pred ccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCC
Q 005240 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDP 112 (706)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~ 112 (706)
..-+.|| -...||.+. ...+|+++..+++..+|..... ..+.++.|+++|..|+....
T Consensus 180 ~nlldWs-s~n~laVal-----------g~~vylW~~~s~~v~~l~~~~~----~~vtSv~ws~~G~~LavG~~------ 237 (484)
T KOG0305|consen 180 LNLLDWS-SANVLAVAL-----------GQSVYLWSASSGSVTELCSFGE----ELVTSVKWSPDGSHLAVGTS------ 237 (484)
T ss_pred hhHhhcc-cCCeEEEEe-----------cceEEEEecCCCceEEeEecCC----CceEEEEECCCCCEEEEeec------
Confidence 3446799 455666643 3689999999999988876532 23789999999999998642
Q ss_pred CCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccC-C-CceecCC-C-ceEeeeeeCCCCcE
Q 005240 113 PKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD-G-TAKDFGT-P-AVYTAVEPSPDQKY 188 (706)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~-g-~~~~lt~-~-~~~~~~~~SpDG~~ 188 (706)
.+.+.++|.. . .++.+.. . ..+..++|. + .
T Consensus 238 -------------------------------------------~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~-~ 271 (484)
T KOG0305|consen 238 -------------------------------------------DGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--S-S 271 (484)
T ss_pred -------------------------------------------CCeEEEEehhhccccccccCCcCceeEEEecc--C-c
Confidence 1567777873 3 5666666 3 788899998 2 2
Q ss_pred EEEEeeccCcccccccccccceEEEEecCCCe-eEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCC
Q 005240 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKL-VRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGD 267 (706)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~ 267 (706)
++ ++..+. ..|..+|+...+ ......+.. ..+-.+.|++|++. ++ .++.
T Consensus 272 ~l-ssGsr~-----------~~I~~~dvR~~~~~~~~~~~H~------------qeVCgLkws~d~~~-lA-----SGgn 321 (484)
T KOG0305|consen 272 VL-SSGSRD-----------GKILNHDVRISQHVVSTLQGHR------------QEVCGLKWSPDGNQ-LA-----SGGN 321 (484)
T ss_pred eE-EEecCC-----------CcEEEEEEecchhhhhhhhccc------------ceeeeeEECCCCCe-ec-----cCCC
Confidence 32 222221 245556654221 111011110 11447899999987 43 3333
Q ss_pred CccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCccc
Q 005240 268 ANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFE 347 (706)
Q Consensus 268 ~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~ 347 (706)
. +.+++||.. ....+..++.+...+-.++|+|=..-|+... .......|...|..++ +.....+..
T Consensus 322 D-------N~~~Iwd~~--~~~p~~~~~~H~aAVKA~awcP~q~~lLAsG-GGs~D~~i~fwn~~~g--~~i~~vdtg-- 387 (484)
T KOG0305|consen 322 D-------NVVFIWDGL--SPEPKFTFTEHTAAVKALAWCPWQSGLLATG-GGSADRCIKFWNTNTG--ARIDSVDTG-- 387 (484)
T ss_pred c-------cceEeccCC--CccccEEEeccceeeeEeeeCCCccCceEEc-CCCcccEEEEEEcCCC--cEecccccC--
Confidence 2 248888872 3344556778889999999999765555443 2334456777777764 222222211
Q ss_pred ccccCCCCCceEeccCCCEEEEee
Q 005240 348 NVYSDPGSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 348 ~~~~~~~~~~~~~s~dg~~l~~~~ 371 (706)
..+-.+.||+..+-|+.+.
T Consensus 388 -----sQVcsL~Wsk~~kEi~sth 406 (484)
T KOG0305|consen 388 -----SQVCSLIWSKKYKELLSTH 406 (484)
T ss_pred -----CceeeEEEcCCCCEEEEec
Confidence 1122478999998887764
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=6.1e-05 Score=88.21 Aligned_cols=163 Identities=10% Similarity=0.113 Sum_probs=87.9
Q ss_pred ceEEEEcc-CCC-ceecCCC-ceEeeeeeCC-CCcEEEEEeeccCcccccccccccceEEEEecCCCee-EEcccCCCCC
Q 005240 157 AQLVLGSL-DGT-AKDFGTP-AVYTAVEPSP-DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAE 231 (706)
Q Consensus 157 ~~l~~~~l-~g~-~~~lt~~-~~~~~~~~Sp-DG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~l~~~~~~~ 231 (706)
+.|.++|+ +++ ...+... ..+..++|+| |+..|+-.+.+ ..|.+||+..+.. ..+.. .
T Consensus 555 g~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~D-------------g~v~iWd~~~~~~~~~~~~-~--- 617 (793)
T PLN00181 555 GVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDD-------------GSVKLWSINQGVSIGTIKT-K--- 617 (793)
T ss_pred CeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCC-------------CEEEEEECCCCcEEEEEec-C---
Confidence 56777888 443 3444444 6788999997 77777655433 3799999985432 22221 1
Q ss_pred CCCcccCccCCCCcceeeec-CCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCC--ceEEeecccccccceecC
Q 005240 232 DIPVCYNSVREGMRSISWRA-DKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEK--PEILHKLDLRFRSVSWCD 308 (706)
Q Consensus 232 ~~p~~~~~~~~g~~~~~~sp-dg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~--~~~l~~~~~~~~~~~wsp 308 (706)
..+..+.|++ +|.. |+... . .+.|++||+ .... ...+..+...+..+.|+
T Consensus 618 ----------~~v~~v~~~~~~g~~-latgs-~-----------dg~I~iwD~---~~~~~~~~~~~~h~~~V~~v~f~- 670 (793)
T PLN00181 618 ----------ANICCVQFPSESGRS-LAFGS-A-----------DHKVYYYDL---RNPKLPLCTMIGHSKTVSYVRFV- 670 (793)
T ss_pred ----------CCeEEEEEeCCCCCE-EEEEe-C-----------CCeEEEEEC---CCCCccceEecCCCCCEEEEEEe-
Confidence 1123567754 5654 44321 1 125888888 3332 23344556677888897
Q ss_pred CCceEEEEeeccccceEEEEEcCCCC--CCCceeeecCcccccccCCCCCceEeccCCCEEEEee
Q 005240 309 DSLALVNETWYKTSQTRTWLVCPGSK--DVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 309 Dg~~l~~~~~~~~~~~~l~~~d~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 371 (706)
++..|+..+. ++..+||-+..... ...+...+... ......+.++++|.+|+...
T Consensus 671 ~~~~lvs~s~--D~~ikiWd~~~~~~~~~~~~l~~~~gh------~~~i~~v~~s~~~~~lasgs 727 (793)
T PLN00181 671 DSSTLVSSST--DNTLKLWDLSMSISGINETPLHSFMGH------TNVKNFVGLSVSDGYIATGS 727 (793)
T ss_pred CCCEEEEEEC--CCEEEEEeCCCCccccCCcceEEEcCC------CCCeeEEEEcCCCCEEEEEe
Confidence 6677766542 23445554432110 01111111111 01122366899998877665
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.6e-05 Score=80.99 Aligned_cols=245 Identities=14% Similarity=0.137 Sum_probs=128.7
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCce-----eecccCCCccccccccceEEecCCcEEEEEec
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-----KPLFESPDICLNAVFGSFVWVNNSTLLIFTIP 106 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~-----~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~ 106 (706)
.++..++-|.|.+++.. .....+..+|..+... ++|--... ..+.+++||+.|..|++.+-
T Consensus 169 ~Vsal~~Dp~GaR~~sG----------s~Dy~v~~wDf~gMdas~~~fr~l~P~E~----h~i~sl~ys~Tg~~iLvvsg 234 (641)
T KOG0772|consen 169 IVSALAVDPSGARFVSG----------SLDYTVKFWDFQGMDASMRSFRQLQPCET----HQINSLQYSVTGDQILVVSG 234 (641)
T ss_pred EEEEeeecCCCceeeec----------cccceEEEEecccccccchhhhccCcccc----cccceeeecCCCCeEEEEec
Confidence 47788899999999664 3345677778776433 33321222 23778999999998887642
Q ss_pred CCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc---CCCceecCCCceEeeeeeC
Q 005240 107 SSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL---DGTAKDFGTPAVYTAVEPS 183 (706)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l---~g~~~~lt~~~~~~~~~~S 183 (706)
...... .. -||..+..-..++-|+.|+ .|.. ..+.+-+|.
T Consensus 235 ~aqakl---------------------~D----------RdG~~~~e~~KGDQYI~Dm~nTKGHi------a~lt~g~wh 277 (641)
T KOG0772|consen 235 SAQAKL---------------------LD----------RDGFEIVEFSKGDQYIRDMYNTKGHI------AELTCGCWH 277 (641)
T ss_pred CcceeE---------------------Ec----------cCCceeeeeeccchhhhhhhccCCce------eeeeccccc
Confidence 111100 00 0000000001133444444 1222 244577899
Q ss_pred CCCcEEEEEeeccCcccccccccccceEEEEecC-CCeeEEcccCCCCC--CCCcccCccCCCCcceeeecCCCceEEEE
Q 005240 184 PDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD-GKLVRELCDLPPAE--DIPVCYNSVREGMRSISWRADKPSTLYWV 260 (706)
Q Consensus 184 pDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~l~~~~~~~--~~p~~~~~~~~g~~~~~~spdg~~~l~~~ 260 (706)
|+.+..+.+.... ..+.+|+++ .++.+++....... ..| +...+|++||+. |+-.
T Consensus 278 P~~k~~FlT~s~D------------gtlRiWdv~~~k~q~qVik~k~~~g~Rv~---------~tsC~~nrdg~~-iAag 335 (641)
T KOG0772|consen 278 PDNKEEFLTCSYD------------GTLRIWDVNNTKSQLQVIKTKPAGGKRVP---------VTSCAWNRDGKL-IAAG 335 (641)
T ss_pred cCcccceEEecCC------------CcEEEEecCCchhheeEEeeccCCCcccC---------ceeeecCCCcch-hhhc
Confidence 9999998877653 478999998 33334443332221 112 336799999996 4321
Q ss_pred EeccCCCCccccCccceeeeecCCCCCCCCceEEe--ec--ccccccceecCCCceEEEEeeccccceEEEEEcCCCCCC
Q 005240 261 EAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH--KL--DLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDV 336 (706)
Q Consensus 261 ~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~--~~--~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~ 336 (706)
. .++ -|-+|+.. -.+-.+.-.. .+ ...+..+.||+||++|+.-+. +.. |-++|+...+
T Consensus 336 c-~DG-----------SIQ~W~~~-~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~--D~t--LKvWDLrq~k- 397 (641)
T KOG0772|consen 336 C-LDG-----------SIQIWDKG-SRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGF--DDT--LKVWDLRQFK- 397 (641)
T ss_pred c-cCC-----------ceeeeecC-CcccccceEeeeccCCCCceeEEEeccccchhhhccC--CCc--eeeeeccccc-
Confidence 1 122 24455430 0011111111 12 336889999999999986432 233 4455555532
Q ss_pred CceeeecCcccccccCCCCCceEeccCCCEEEEee
Q 005240 337 APRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 337 ~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 371 (706)
++..... .....+ ....-.||||.+.|+...
T Consensus 398 kpL~~~t-gL~t~~---~~tdc~FSPd~kli~TGt 428 (641)
T KOG0772|consen 398 KPLNVRT-GLPTPF---PGTDCCFSPDDKLILTGT 428 (641)
T ss_pred cchhhhc-CCCccC---CCCccccCCCceEEEecc
Confidence 2222211 111110 112345799999877654
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.2e-06 Score=94.51 Aligned_cols=145 Identities=14% Similarity=0.088 Sum_probs=90.5
Q ss_pred ceEEEEccCCCceecCCCceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcc
Q 005240 157 AQLVLGSLDGTAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVC 236 (706)
Q Consensus 157 ~~l~~~~l~g~~~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~ 236 (706)
.+||+.+..|..++++.+.....+.|||||++|+|........+. .......++++.++++++.++ ...
T Consensus 379 s~Lwv~~~gg~~~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v-~~~~~~gql~~~~vd~ge~~~--~~~-------- 447 (591)
T PRK13616 379 SSLWVGPLGGVAVQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRV-IRDPATGQLARTPVDASAVAS--RVP-------- 447 (591)
T ss_pred eEEEEEeCCCcceeeecCCCCCCceECCCCCceEEEecCcceEEE-eccCCCceEEEEeccCchhhh--ccC--------
Confidence 689999987777888877558899999999999998754211000 000113577777777766544 111
Q ss_pred cCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCc-----eEEeecc-cccccceecCCC
Q 005240 237 YNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP-----EILHKLD-LRFRSVSWCDDS 310 (706)
Q Consensus 237 ~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~-----~~l~~~~-~~~~~~~wspDg 310 (706)
.++..+.|||||++ |+|+.. + .|++.-+...++|+. +.|.... ....++.|.+|+
T Consensus 448 -----g~Issl~wSpDG~R-iA~i~~---g----------~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~ 508 (591)
T PRK13616 448 -----GPISELQLSRDGVR-AAMIIG---G----------KVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGD 508 (591)
T ss_pred -----CCcCeEEECCCCCE-EEEEEC---C----------EEEEEEEEeCCCCceeecccEEeecccCCccccceEecCC
Confidence 22558899999999 888751 1 245521111144542 2244332 335788999999
Q ss_pred ceEEEEeeccccceEEEEEcCCCC
Q 005240 311 LALVNETWYKTSQTRTWLVCPGSK 334 (706)
Q Consensus 311 ~~l~~~~~~~~~~~~l~~~d~~~~ 334 (706)
..+ .... +....+|.+++++.
T Consensus 509 ~L~-V~~~--~~~~~v~~v~vDG~ 529 (591)
T PRK13616 509 SLV-VGRS--DPEHPVWYVNLDGS 529 (591)
T ss_pred EEE-EEec--CCCCceEEEecCCc
Confidence 844 4332 24456999999984
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.6e-05 Score=86.27 Aligned_cols=199 Identities=11% Similarity=0.024 Sum_probs=113.9
Q ss_pred cccceeeCC-CCCeEEEEeeccccccccCCceeEEEEEcCCCc--------eeecccCCCccccccccceEEecCCc-EE
Q 005240 32 KINFVSWSP-DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE--------AKPLFESPDICLNAVFGSFVWVNNST-LL 101 (706)
Q Consensus 32 ~~~~~~~SP-DG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~--------~~~lt~~~~~~~~~~~~~~~wSpDg~-~l 101 (706)
.+..+.||| |++.||..+. + ..|.++++.++. ...+..+.. .+..+.|+|++. .|
T Consensus 77 ~V~~v~fsP~d~~~LaSgS~--------D--gtIkIWdi~~~~~~~~~~~~l~~L~gH~~-----~V~~l~f~P~~~~iL 141 (493)
T PTZ00421 77 PIIDVAFNPFDPQKLFTASE--------D--GTIMGWGIPEEGLTQNISDPIVHLQGHTK-----KVGIVSFHPSAMNVL 141 (493)
T ss_pred CEEEEEEcCCCCCEEEEEeC--------C--CEEEEEecCCCccccccCcceEEecCCCC-----cEEEEEeCcCCCCEE
Confidence 588999999 8888877643 3 455555654432 112221211 367899999874 55
Q ss_pred EEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCC-ceecCCC-ceEe
Q 005240 102 IFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGTP-AVYT 178 (706)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~-~~~lt~~-~~~~ 178 (706)
+..+. .+.|.++|+ +++ ...+... ..+.
T Consensus 142 aSgs~-------------------------------------------------DgtVrIWDl~tg~~~~~l~~h~~~V~ 172 (493)
T PTZ00421 142 ASAGA-------------------------------------------------DMVVNVWDVERGKAVEVIKCHSDQIT 172 (493)
T ss_pred EEEeC-------------------------------------------------CCEEEEEECCCCeEEEEEcCCCCceE
Confidence 54431 156778888 553 3344433 5788
Q ss_pred eeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCe-eEEcccCCCCCCCCcccCccCCCCcceeeecCCCceE
Q 005240 179 AVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL-VRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTL 257 (706)
Q Consensus 179 ~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l 257 (706)
.++|+|||+.|+..+.+ ..|.+||+..++ +..+..+.... .....|.+++.. |
T Consensus 173 sla~spdG~lLatgs~D-------------g~IrIwD~rsg~~v~tl~~H~~~~------------~~~~~w~~~~~~-i 226 (493)
T PTZ00421 173 SLEWNLDGSLLCTTSKD-------------KKLNIIDPRDGTIVSSVEAHASAK------------SQRCLWAKRKDL-I 226 (493)
T ss_pred EEEEECCCCEEEEecCC-------------CEEEEEECCCCcEEEEEecCCCCc------------ceEEEEcCCCCe-E
Confidence 99999999988765543 379999998554 33332221110 114578888775 4
Q ss_pred EEEEeccCCCCccccCccceeeeecCCCCCCCCceEEee--cccccccceecCCCceEEEEeeccccceEEEEEcCCC
Q 005240 258 YWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK--LDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (706)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~--~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~ 333 (706)
+.+. .+... ...|.+||+. ....+..+.. .......+.|++|+..|+.... .++ .|..+|+.+
T Consensus 227 vt~G-~s~s~-------Dr~VklWDlr--~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggk-gDg--~Iriwdl~~ 291 (493)
T PTZ00421 227 ITLG-CSKSQ-------QRQIMLWDTR--KMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSK-GEG--NIRCFELMN 291 (493)
T ss_pred EEEe-cCCCC-------CCeEEEEeCC--CCCCceeEeccCCCCceEEEEEcCCCCEEEEEEe-CCC--eEEEEEeeC
Confidence 4222 11111 1247888883 2222322221 2233455779999998776542 123 455566655
|
|
| >TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase | Back alignment and domain information |
|---|
Probab=98.54 E-value=6.1e-06 Score=83.63 Aligned_cols=75 Identities=16% Similarity=0.119 Sum_probs=55.0
Q ss_pred HCCeEEEEcCCCCcCCCCCCCCc--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEE
Q 005240 553 ARRFAVLAGPSIPIIGEGDKLPN--DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCG 630 (706)
Q Consensus 553 ~~G~~v~~~~~~~~~g~g~~~~~--~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~ 630 (706)
+.+|.|++.+.+ |+|.+... ....+...+|+.+.++++ +.+++.++||||||++++.++.++|++++.+
T Consensus 49 ~~~~~vi~~Dl~---G~G~S~~~~~~~~~~~~~~~~~~~i~~l------~~~~~~LvG~S~GG~va~~~a~~~p~~v~~l 119 (276)
T TIGR02240 49 DPDLEVIAFDVP---GVGGSSTPRHPYRFPGLAKLAARMLDYL------DYGQVNAIGVSWGGALAQQFAHDYPERCKKL 119 (276)
T ss_pred ccCceEEEECCC---CCCCCCCCCCcCcHHHHHHHHHHHHHHh------CcCceEEEEECHHHHHHHHHHHHCHHHhhhe
Confidence 357888885554 56655332 123455566776666665 3467999999999999999999999999999
Q ss_pred EeccCC
Q 005240 631 IARSGS 636 (706)
Q Consensus 631 v~~~~~ 636 (706)
|+.++.
T Consensus 120 vl~~~~ 125 (276)
T TIGR02240 120 ILAATA 125 (276)
T ss_pred EEeccC
Confidence 888754
|
This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid. |
| >KOG3847 consensus Phospholipase A2 (platelet-activating factor acetylhydrolase in humans) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.54 E-value=9.2e-07 Score=84.87 Aligned_cols=171 Identities=18% Similarity=0.131 Sum_probs=103.3
Q ss_pred CCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCC-------------CCC-CC-
Q 005240 510 DGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGE-------------GDK-LP- 574 (706)
Q Consensus 510 ~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~-------------g~~-~~- 574 (706)
.++||+||+-||=+ ++...+......||++||+|.++..|+.... ..+ +.
T Consensus 115 ~~k~PvvvFSHGLg---------------gsRt~YSa~c~~LAShG~VVaavEHRD~SA~~Ty~~~~~~~n~~lveq~~~ 179 (399)
T KOG3847|consen 115 NDKYPVVVFSHGLG---------------GSRTLYSAYCTSLASHGFVVAAVEHRDRSACWTYVLKEKHENEPLVEQWIK 179 (399)
T ss_pred CCCccEEEEecccc---------------cchhhHHHHhhhHhhCceEEEEeecccCcceeEEEecccccCCcccccceE
Confidence 45699999999831 1222223456778999999998666554420 000 00
Q ss_pred ------c-------hhhHHHHHHHHHHHHHHHHHc---------------------CCCCCCcEEEEEechHHHHHHHHH
Q 005240 575 ------N-------DRFVEQLVSSAEAAVEEVVRR---------------------GVADPSRIAVGGHSYGAFMTAHLL 620 (706)
Q Consensus 575 ------~-------~~~~~~~~~D~~~~~~~l~~~---------------------~~id~~~i~i~G~S~GG~~a~~~~ 620 (706)
+ ..-...-.+....|++-|.+. +.+|.++++|+|||+||..++...
T Consensus 180 ir~v~~~ekef~irNeqv~~R~~Ec~~aL~il~~i~~g~~~~~~L~g~~~~~~~~K~nl~~s~~aViGHSFGgAT~i~~s 259 (399)
T KOG3847|consen 180 IRLVEANEKEFHIRNEQVGQRAQECQKALKILEQINDGGTPDNVLPGNNSDLEQLKGNLDTSQAAVIGHSFGGATSIASS 259 (399)
T ss_pred eeeeccCceeEEeeCHHHHHHHHHHHHHHHHHHHhhcCCCchhcccCccccHHHHhcchhhhhhhheeccccchhhhhhh
Confidence 0 001112244445555544321 237788999999999999999999
Q ss_pred HhCCCceeEEEeccCCCC----CCC----CCc------cch---HHHHHHHHHhCCCcEEEEEeCCCCccCCC-------
Q 005240 621 AHAPHLFCCGIARSGSYN----KTL----TPF------GFQ---AERFFDALKGHGALSRLVLLPFEHHVYAA------- 676 (706)
Q Consensus 621 ~~~p~~~~a~v~~~~~~d----~~~----~~~------~~~---~~~~~~~l~~~~~~~~~~~~~~~~H~~~~------- 676 (706)
+.+ ..|+|+|+..+-.- ..+ .|. .|| ...+.++....+..-.++.+.|.-|....
T Consensus 260 s~~-t~FrcaI~lD~WM~Pl~~~~~~~arqP~~finv~~fQ~~en~~vmKki~~~n~g~~~it~~GsVHqnfsDfpfv~p 338 (399)
T KOG3847|consen 260 SSH-TDFRCAIALDAWMFPLDQLQYSQARQPTLFINVEDFQWNENLLVMKKIESQNEGNHVITLDGSVHQNFSDFPFVTP 338 (399)
T ss_pred ccc-cceeeeeeeeeeecccchhhhhhccCCeEEEEcccccchhHHHHHHhhhCCCccceEEEEccceecccccCccccH
Confidence 888 78999998875321 111 121 122 22445555555666678889999994311
Q ss_pred -----------ccc----HHHHHHHHHHHHHHHhc
Q 005240 677 -----------REN----VMHVIWETDRWLQKYCL 696 (706)
Q Consensus 677 -----------~~~----~~~~~~~~~~f~~~~l~ 696 (706)
..+ ..-..+..++||++|+.
T Consensus 339 ~~i~k~f~~kg~~dpy~~~~~~~r~slaFLq~h~d 373 (399)
T KOG3847|consen 339 NWIGKVFKVKGETDPYEAMQIAIRASLAFLQKHLD 373 (399)
T ss_pred HHHHHHhccCCCCChHHHHHHHHHHHHHHHHhhhh
Confidence 111 23455678999999875
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.3e-05 Score=80.64 Aligned_cols=267 Identities=13% Similarity=0.162 Sum_probs=143.6
Q ss_pred ceeEeecCCCCCCCCeeeeecCCCCC--cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCc
Q 005240 6 GIGIHRLLPDDSLGPEKEVHGYPDGA--KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (706)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~i~~~~~~~--~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~ 83 (706)
.|-|.|+.+ |..++--..+.+. .-.-.+||.|+|++|=.. ...|-+++... .- +.....-
T Consensus 283 ~l~IWDI~t----G~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~-----------~~sisIyEtps--f~-lld~Ksl 344 (698)
T KOG2314|consen 283 QLIIWDIAT----GLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMT-----------GNSISIYETPS--FM-LLDKKSL 344 (698)
T ss_pred eEEEEEccc----cchhcceeccCCCccccceEEeccCCceeEEec-----------cceEEEEecCc--ee-eeccccc
Confidence 467888877 7655543233333 233568999999988753 24566665433 11 1111111
Q ss_pred cccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEc
Q 005240 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (706)
Q Consensus 84 ~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~ 163 (706)
.+. ++.++.|||-+..|||.+++..... .++-++.
T Consensus 345 ki~-gIr~FswsP~~~llAYwtpe~~~~p--------------------------------------------arvtL~e 379 (698)
T KOG2314|consen 345 KIS-GIRDFSWSPTSNLLAYWTPETNNIP--------------------------------------------ARVTLME 379 (698)
T ss_pred CCc-cccCcccCCCcceEEEEcccccCCc--------------------------------------------ceEEEEe
Confidence 112 3889999999999999976533221 2333444
Q ss_pred c-CC-Cce--ecCCCceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCc
Q 005240 164 L-DG-TAK--DFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNS 239 (706)
Q Consensus 164 l-~g-~~~--~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~ 239 (706)
+ ++ +.+ .|.+- ....+-|-..|++|.|...+..-.. .....+++.++.+.-+.+ .+...+..
T Consensus 380 vPs~~~iRt~nlfnV-sDckLhWQk~gdyLcvkvdR~tK~~---~~g~f~n~eIfrireKdI-pve~velk--------- 445 (698)
T KOG2314|consen 380 VPSKREIRTKNLFNV-SDCKLHWQKSGDYLCVKVDRHTKSK---VKGQFSNLEIFRIREKDI-PVEVVELK--------- 445 (698)
T ss_pred cCccceeeeccceee-eccEEEeccCCcEEEEEEEeecccc---ccceEeeEEEEEeeccCC-Cceeeecc---------
Confidence 4 33 221 12111 2235679999999988776543210 001123455555543321 11111111
Q ss_pred cCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeec-ccccccceecCCCceEEEEee
Q 005240 240 VREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL-DLRFRSVSWCDDSLALVNETW 318 (706)
Q Consensus 240 ~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~-~~~~~~~~wspDg~~l~~~~~ 318 (706)
..+..|+|-|.|.. .+.+..... ..+-..|.+.. ..++++-+... ......+.|||.|+.++.+.-
T Consensus 446 --e~vi~FaWEP~gdk-F~vi~g~~~-------k~tvsfY~~e~---~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l 512 (698)
T KOG2314|consen 446 --ESVIAFAWEPHGDK-FAVISGNTV-------KNTVSFYAVET---NIKKPSLVKELDKKFANTVFWSPKGRFVVVAAL 512 (698)
T ss_pred --hheeeeeeccCCCe-EEEEEcccc-------ccceeEEEeec---CCCchhhhhhhcccccceEEEcCCCcEEEEEEe
Confidence 11447899999998 554532211 11123555553 23344333222 355678899999999887653
Q ss_pred ccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEee
Q 005240 319 YKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 319 ~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 371 (706)
. +..+.|+.+|.+-..-+.... ...+....+.|.|.|+|++..+
T Consensus 513 ~-s~~g~l~F~D~~~a~~k~~~~--------~eh~~at~veWDPtGRYvvT~s 556 (698)
T KOG2314|consen 513 V-SRRGDLEFYDTDYADLKDTAS--------PEHFAATEVEWDPTGRYVVTSS 556 (698)
T ss_pred c-ccccceEEEecchhhhhhccC--------ccccccccceECCCCCEEEEee
Confidence 3 355678888876311111111 1133445678999999988776
|
|
| >COG0627 Predicted esterase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.5e-06 Score=85.99 Aligned_cols=100 Identities=22% Similarity=0.238 Sum_probs=78.1
Q ss_pred HcCCCCCC--cEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCCCC---------CCCcc------------------
Q 005240 595 RRGVADPS--RIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKT---------LTPFG------------------ 645 (706)
Q Consensus 595 ~~~~id~~--~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d~~---------~~~~~------------------ 645 (706)
+...++.+ +.+|.|+||||+.|+.+++++|++|+.+++++|+.+.. ..++.
T Consensus 143 ~~f~~~~~~~~~aI~G~SMGG~GAl~lA~~~pd~f~~~sS~Sg~~~~s~~~~~~~~~~~~~g~~~~~~~~G~~~~~~w~~ 222 (316)
T COG0627 143 AAFPADGTGDGRAIAGHSMGGYGALKLALKHPDRFKSASSFSGILSPSSPWGPTLAMGDPWGGKAFNAMLGPDSDPAWQE 222 (316)
T ss_pred HhcCcccccCCceeEEEeccchhhhhhhhhCcchhceeccccccccccccccccccccccccCccHHHhcCCCccccccc
Confidence 33445653 99999999999999999999999999999999987654 21100
Q ss_pred ------------ch-------------------------------HHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHH
Q 005240 646 ------------FQ-------------------------------AERFFDALKGHGALSRLVLLPFEHHVYAARENVMH 682 (706)
Q Consensus 646 ------------~~-------------------------------~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~ 682 (706)
.. ...+.++|++.|.+..+..+++..|.+.. +..
T Consensus 223 ~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~g~ad~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~G~Hsw~~---w~~ 299 (316)
T COG0627 223 NDPLSLIEKLVANANTRIWVYGGSPPELLIDNGPADFFLAANNLSTRAFAEALRAAGIPNGVRDQPGGDHSWYF---WAS 299 (316)
T ss_pred cCchhHHHHhhhcccccceecccCCCccccccccchhhhhhcccCHHHHHHHHHhcCCCceeeeCCCCCcCHHH---HHH
Confidence 00 11788899999999999999999998653 567
Q ss_pred HHHHHHHHHHHHhcc
Q 005240 683 VIWETDRWLQKYCLS 697 (706)
Q Consensus 683 ~~~~~~~f~~~~l~~ 697 (706)
.++.++.|+.+.|..
T Consensus 300 ~l~~~~~~~a~~l~~ 314 (316)
T COG0627 300 QLADHLPWLAGALGL 314 (316)
T ss_pred HHHHHHHHHHHHhcc
Confidence 788888898887753
|
|
| >PLN02679 hydrolase, alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=98.50 E-value=9.6e-06 Score=85.39 Aligned_cols=74 Identities=18% Similarity=0.103 Sum_probs=52.1
Q ss_pred HCCeEEEEcCCCCcCCCCCCCCc---hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHH-hCCCcee
Q 005240 553 ARRFAVLAGPSIPIIGEGDKLPN---DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLA-HAPHLFC 628 (706)
Q Consensus 553 ~~G~~v~~~~~~~~~g~g~~~~~---~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~-~~p~~~~ 628 (706)
+.+|.|+.++.+ |+|.+... ....+...+|+.+.++.+ ...++.++|||+||.+++.++. ++|++++
T Consensus 112 ~~~~~via~Dl~---G~G~S~~~~~~~~~~~~~a~~l~~~l~~l------~~~~~~lvGhS~Gg~ia~~~a~~~~P~rV~ 182 (360)
T PLN02679 112 AKNYTVYAIDLL---GFGASDKPPGFSYTMETWAELILDFLEEV------VQKPTVLIGNSVGSLACVIAASESTRDLVR 182 (360)
T ss_pred hcCCEEEEECCC---CCCCCCCCCCccccHHHHHHHHHHHHHHh------cCCCeEEEEECHHHHHHHHHHHhcChhhcC
Confidence 458999986665 56655332 122345556666655543 2368999999999999988887 4689999
Q ss_pred EEEeccC
Q 005240 629 CGIARSG 635 (706)
Q Consensus 629 a~v~~~~ 635 (706)
++|..++
T Consensus 183 ~LVLi~~ 189 (360)
T PLN02679 183 GLVLLNC 189 (360)
T ss_pred EEEEECC
Confidence 9988774
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.00016 Score=79.17 Aligned_cols=118 Identities=12% Similarity=0.113 Sum_probs=69.8
Q ss_pred ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCC
Q 005240 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (706)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~ 254 (706)
..+..++|+|++..++.+.... ..|.+||+.+++........ ..+..++|+|||+
T Consensus 126 ~~V~sVaf~P~g~~iLaSgS~D------------gtIrIWDl~tg~~~~~i~~~-------------~~V~SlswspdG~ 180 (568)
T PTZ00420 126 KKISIIDWNPMNYYIMCSSGFD------------SFVNIWDIENEKRAFQINMP-------------KKLSSLKWNIKGN 180 (568)
T ss_pred CcEEEEEECCCCCeEEEEEeCC------------CeEEEEECCCCcEEEEEecC-------------CcEEEEEECCCCC
Confidence 5688999999999886655432 37999999865432211111 1244789999998
Q ss_pred ceEEEEEeccCCCCccccCccceeeeecCCCCCCCCc-eEEeecccccc-c----ceecCCCceEEEEeeccccceEEEE
Q 005240 255 STLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP-EILHKLDLRFR-S----VSWCDDSLALVNETWYKTSQTRTWL 328 (706)
Q Consensus 255 ~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~-~~l~~~~~~~~-~----~~wspDg~~l~~~~~~~~~~~~l~~ 328 (706)
. |+... . ...|.+||+ .+++. ..+..+.+... . ..|++|+.+|+.+.........|.+
T Consensus 181 l-Lat~s-~-----------D~~IrIwD~---Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkL 244 (568)
T PTZ00420 181 L-LSGTC-V-----------GKHMHIIDP---RKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKL 244 (568)
T ss_pred E-EEEEe-c-----------CCEEEEEEC---CCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEE
Confidence 5 43221 1 124788888 44443 33433333221 1 2345898888876544333335777
Q ss_pred EcCCC
Q 005240 329 VCPGS 333 (706)
Q Consensus 329 ~d~~~ 333 (706)
+|+..
T Consensus 245 WDlr~ 249 (568)
T PTZ00420 245 WDLKN 249 (568)
T ss_pred EECCC
Confidence 77765
|
|
| >PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=4.2e-06 Score=88.87 Aligned_cols=75 Identities=21% Similarity=0.195 Sum_probs=50.9
Q ss_pred HCCeEEEEcCCCCcCCCCCCCC--chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEE
Q 005240 553 ARRFAVLAGPSIPIIGEGDKLP--NDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCG 630 (706)
Q Consensus 553 ~~G~~v~~~~~~~~~g~g~~~~--~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~ 630 (706)
..+|.|+..+.+ |+|.+.. ..........++.. +.+. ++..++.++|||+||++++.++.++|++++++
T Consensus 155 ~~~~~v~~~d~~---g~G~s~~~~~~~~~~~~~~~~~~----~~~~--~~~~~~~lvG~S~Gg~~a~~~a~~~~~~v~~l 225 (371)
T PRK14875 155 AAGRPVIALDLP---GHGASSKAVGAGSLDELAAAVLA----FLDA--LGIERAHLVGHSMGGAVALRLAARAPQRVASL 225 (371)
T ss_pred hcCCEEEEEcCC---CCCCCCCCCCCCCHHHHHHHHHH----HHHh--cCCccEEEEeechHHHHHHHHHHhCchheeEE
Confidence 456999986654 4444422 12223333333333 3332 45678999999999999999999999999999
Q ss_pred EeccCC
Q 005240 631 IARSGS 636 (706)
Q Consensus 631 v~~~~~ 636 (706)
++.+|.
T Consensus 226 v~~~~~ 231 (371)
T PRK14875 226 TLIAPA 231 (371)
T ss_pred EEECcC
Confidence 988764
|
|
| >TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.6e-06 Score=90.96 Aligned_cols=89 Identities=11% Similarity=-0.027 Sum_probs=66.2
Q ss_pred chHHHHHHHCCeEEEEcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCC
Q 005240 545 PTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAP 624 (706)
Q Consensus 545 ~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p 624 (706)
..++..|+++||.|+..+.++ .|.+.....+..-...|+.++++++.++. ...+|.++|||+||.+++.++..+|
T Consensus 84 ~~~~~~L~~~G~~V~~~D~~g---~g~s~~~~~~~d~~~~~~~~~v~~l~~~~--~~~~i~lvGhS~GG~i~~~~~~~~~ 158 (350)
T TIGR01836 84 RSLVRGLLERGQDVYLIDWGY---PDRADRYLTLDDYINGYIDKCVDYICRTS--KLDQISLLGICQGGTFSLCYAALYP 158 (350)
T ss_pred chHHHHHHHCCCeEEEEeCCC---CCHHHhcCCHHHHHHHHHHHHHHHHHHHh--CCCcccEEEECHHHHHHHHHHHhCc
Confidence 356788999999999866543 33322222222222355888899998764 3368999999999999999999999
Q ss_pred CceeEEEeccCCCC
Q 005240 625 HLFCCGIARSGSYN 638 (706)
Q Consensus 625 ~~~~a~v~~~~~~d 638 (706)
++++++++.++.++
T Consensus 159 ~~v~~lv~~~~p~~ 172 (350)
T TIGR01836 159 DKIKNLVTMVTPVD 172 (350)
T ss_pred hheeeEEEeccccc
Confidence 99999999998765
|
This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates. |
| >PRK00870 haloalkane dehalogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=2e-06 Score=88.53 Aligned_cols=125 Identities=19% Similarity=0.194 Sum_probs=77.7
Q ss_pred ceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEE
Q 005240 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 560 (706)
Q Consensus 481 ~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~ 560 (706)
....+.+...+|..+.-. |...+ ++ . -|.||++||.+.. .......+..|.+.||.|++
T Consensus 20 ~~~~~~~~~~~~~~~~i~-y~~~G-~~-~---~~~lvliHG~~~~---------------~~~w~~~~~~L~~~gy~vi~ 78 (302)
T PRK00870 20 APHYVDVDDGDGGPLRMH-YVDEG-PA-D---GPPVLLLHGEPSW---------------SYLYRKMIPILAAAGHRVIA 78 (302)
T ss_pred CceeEeecCCCCceEEEE-EEecC-CC-C---CCEEEEECCCCCc---------------hhhHHHHHHHHHhCCCEEEE
Confidence 555666665555443322 22222 11 1 2578999995321 00111334556678999999
Q ss_pred cCCCCcCCCCCCCCch----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccC
Q 005240 561 GPSIPIIGEGDKLPND----RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSG 635 (706)
Q Consensus 561 ~~~~~~~g~g~~~~~~----~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~ 635 (706)
++-+ |+|.+.... ...+...+|+.+.++.+ +..++.++||||||.+++.++.++|+++++++..++
T Consensus 79 ~Dl~---G~G~S~~~~~~~~~~~~~~a~~l~~~l~~l------~~~~v~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~ 148 (302)
T PRK00870 79 PDLI---GFGRSDKPTRREDYTYARHVEWMRSWFEQL------DLTDVTLVCQDWGGLIGLRLAAEHPDRFARLVVANT 148 (302)
T ss_pred ECCC---CCCCCCCCCCcccCCHHHHHHHHHHHHHHc------CCCCEEEEEEChHHHHHHHHHHhChhheeEEEEeCC
Confidence 6655 566553321 12344555555544433 346899999999999999999999999999998875
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=4.5e-05 Score=83.37 Aligned_cols=114 Identities=8% Similarity=0.086 Sum_probs=71.8
Q ss_pred cccceeeCCC-CCeEEEEeeccccccccCCceeEEEEEcCCCc--ee-------ecccCCCccccccccceEEecCCcEE
Q 005240 32 KINFVSWSPD-GKRIAFSVRVDEEDNVSSCKLRVWIADAETGE--AK-------PLFESPDICLNAVFGSFVWVNNSTLL 101 (706)
Q Consensus 32 ~~~~~~~SPD-G~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~--~~-------~lt~~~~~~~~~~~~~~~wSpDg~~l 101 (706)
.+..+.|+|+ ++.||..+. ++ .|.++++.++. .. .+..+.. .+..+.|+|++..+
T Consensus 76 ~V~~lafsP~~~~lLASgS~--------Dg--tIrIWDi~t~~~~~~~i~~p~~~L~gH~~-----~V~sVaf~P~g~~i 140 (568)
T PTZ00420 76 SILDLQFNPCFSEILASGSE--------DL--TIRVWEIPHNDESVKEIKDPQCILKGHKK-----KISIIDWNPMNYYI 140 (568)
T ss_pred CEEEEEEcCCCCCEEEEEeC--------CC--eEEEEECCCCCccccccccceEEeecCCC-----cEEEEEECCCCCeE
Confidence 5889999997 677766542 33 55555655321 11 1221222 37789999999876
Q ss_pred EEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCC-ceecCCCceEee
Q 005240 102 IFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGTPAVYTA 179 (706)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~-~~~lt~~~~~~~ 179 (706)
+.++.. .+.|.++|+ +++ ...+.....+..
T Consensus 141 LaSgS~------------------------------------------------DgtIrIWDl~tg~~~~~i~~~~~V~S 172 (568)
T PTZ00420 141 MCSSGF------------------------------------------------DSFVNIWDIENEKRAFQINMPKKLSS 172 (568)
T ss_pred EEEEeC------------------------------------------------CCeEEEEECCCCcEEEEEecCCcEEE
Confidence 544211 146777788 453 333433356889
Q ss_pred eeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCee
Q 005240 180 VEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV 221 (706)
Q Consensus 180 ~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 221 (706)
++|+|||+.|+..... ..|.+||+.+++.
T Consensus 173 lswspdG~lLat~s~D-------------~~IrIwD~Rsg~~ 201 (568)
T PTZ00420 173 LKWNIKGNLLSGTCVG-------------KHMHIIDPRKQEI 201 (568)
T ss_pred EEECCCCCEEEEEecC-------------CEEEEEECCCCcE
Confidence 9999999988765433 3799999986543
|
|
| >KOG4409 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.44 E-value=3.9e-06 Score=82.83 Aligned_cols=126 Identities=16% Similarity=0.096 Sum_probs=71.1
Q ss_pred ceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEE
Q 005240 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 560 (706)
Q Consensus 481 ~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~ 560 (706)
..+.+.+. ++.++...-..+.. ..+ .| +|++||=+.+ -..| ......|++ ...|.+
T Consensus 66 ~~~~v~i~--~~~~iw~~~~~~~~--~~~---~p-lVliHGyGAg-----------~g~f----~~Nf~~La~-~~~vya 121 (365)
T KOG4409|consen 66 SKKYVRIP--NGIEIWTITVSNES--ANK---TP-LVLIHGYGAG-----------LGLF----FRNFDDLAK-IRNVYA 121 (365)
T ss_pred ceeeeecC--CCceeEEEeecccc--cCC---Cc-EEEEeccchh-----------HHHH----HHhhhhhhh-cCceEE
Confidence 34445444 45566655555553 222 45 6668873211 0111 122334444 666766
Q ss_pred cCCCCcCCCCCCCCchhh--HHHHHHHHHHHHH-HHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCC
Q 005240 561 GPSIPIIGEGDKLPNDRF--VEQLVSSAEAAVE-EVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 636 (706)
Q Consensus 561 ~~~~~~~g~g~~~~~~~~--~~~~~~D~~~~~~-~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~ 636 (706)
. +-.|+|++.+..-- ......-+.+.++ |-.+.+ + .+..|+|||+|||++...|.++|++++-+|+..|.
T Consensus 122 i---DllG~G~SSRP~F~~d~~~~e~~fvesiE~WR~~~~-L--~KmilvGHSfGGYLaa~YAlKyPerV~kLiLvsP~ 194 (365)
T KOG4409|consen 122 I---DLLGFGRSSRPKFSIDPTTAEKEFVESIEQWRKKMG-L--EKMILVGHSFGGYLAAKYALKYPERVEKLILVSPW 194 (365)
T ss_pred e---cccCCCCCCCCCCCCCcccchHHHHHHHHHHHHHcC-C--cceeEeeccchHHHHHHHHHhChHhhceEEEeccc
Confidence 3 33356666543100 0111112223333 444444 3 58999999999999999999999999999988875
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.0002 Score=71.60 Aligned_cols=218 Identities=15% Similarity=0.083 Sum_probs=110.8
Q ss_pred EeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCc-ceeeecCCCc
Q 005240 177 YTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMR-SISWRADKPS 255 (706)
Q Consensus 177 ~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~-~~~~spdg~~ 255 (706)
...+.+|.|||++++.... | ...+-++|+..+++..-...++.... ++ .+.+ .....-||+-
T Consensus 97 ~~~~~ls~dgk~~~V~N~T-P----------a~SVtVVDl~~~kvv~ei~~PGC~~i---yP---~~~~~F~~lC~DGsl 159 (342)
T PF06433_consen 97 KNMFALSADGKFLYVQNFT-P----------ATSVTVVDLAAKKVVGEIDTPGCWLI---YP---SGNRGFSMLCGDGSL 159 (342)
T ss_dssp GGGEEE-TTSSEEEEEEES-S----------SEEEEEEETTTTEEEEEEEGTSEEEE---EE---EETTEEEEEETTSCE
T ss_pred ccceEEccCCcEEEEEccC-C----------CCeEEEEECCCCceeeeecCCCEEEE---Ee---cCCCceEEEecCCce
Confidence 3467899999999766544 3 36899999998887665555543211 01 1111 2233445542
Q ss_pred eEEEEEeccCCCCccccCccceeeeecCCCCCCCCceE-Eee-----cccccccceecCCCceEEEEeeccccceEEEEE
Q 005240 256 TLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEI-LHK-----LDLRFRSVSWCDDSLALVNETWYKTSQTRTWLV 329 (706)
Q Consensus 256 ~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~-l~~-----~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~ 329 (706)
..+ .+|. .|+..+ .+. .+..+..+.++.++..++|.+ -...||.+
T Consensus 160 --~~v-------------------~Ld~----~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~S----y~G~v~~~ 210 (342)
T PF06433_consen 160 --LTV-------------------TLDA----DGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVS----YEGNVYSA 210 (342)
T ss_dssp --EEE-------------------EETS----TSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEB----TTSEEEEE
T ss_pred --EEE-------------------EECC----CCCEeEeeccccCCCCcccccccceECCCCeEEEEe----cCCEEEEE
Confidence 211 1221 233321 111 122344566777777777765 34479999
Q ss_pred cCCCCCCCceeeecCcccc-c----ccCCCCCc-eEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecC
Q 005240 330 CPGSKDVAPRVLFDRVFEN-V----YSDPGSPM-MTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDIN 403 (706)
Q Consensus 330 d~~~~~~~~~~l~~~~~~~-~----~~~~~~~~-~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~ 403 (706)
|+.+.. ++....++.-. . .=.||..+ +++.+...+|++.-... ..|...++ -.++|.+|++
T Consensus 211 dlsg~~--~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g----------~~gsHKdp-gteVWv~D~~ 277 (342)
T PF06433_consen 211 DLSGDS--AKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQG----------GEGSHKDP-GTEVWVYDLK 277 (342)
T ss_dssp EETTSS--EEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE------------TT-TTS--EEEEEEEETT
T ss_pred eccCCc--ccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCC----------CCCCccCC-ceEEEEEECC
Confidence 998843 33332221100 0 00344443 33444444444322100 12223333 3479999999
Q ss_pred CCceeeeecccchhhhhhhhhhccCCCceecccCCCEEEEEEecCCCCcEEEEEECCCCceeEe
Q 005240 404 TGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQI 467 (706)
Q Consensus 404 ~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~p~~v~~~~~~~~~~~~l 467 (706)
+++..+.+..+.. ..++.+|.|.+=++|..+.. -..++++|..+|+..+-
T Consensus 278 t~krv~Ri~l~~~------------~~Si~Vsqd~~P~L~~~~~~--~~~l~v~D~~tGk~~~~ 327 (342)
T PF06433_consen 278 THKRVARIPLEHP------------IDSIAVSQDDKPLLYALSAG--DGTLDVYDAATGKLVRS 327 (342)
T ss_dssp TTEEEEEEEEEEE------------ESEEEEESSSS-EEEEEETT--TTEEEEEETTT--EEEE
T ss_pred CCeEEEEEeCCCc------------cceEEEccCCCcEEEEEcCC--CCeEEEEeCcCCcEEee
Confidence 9986555554331 12467888888677765443 25799999999876554
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.2e-06 Score=85.28 Aligned_cols=82 Identities=20% Similarity=0.217 Sum_probs=60.3
Q ss_pred HHHHHHHCCeEEEEcCCCCcCCCCCCCCc----hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHh
Q 005240 547 SSLIFLARRFAVLAGPSIPIIGEGDKLPN----DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAH 622 (706)
Q Consensus 547 ~~~~l~~~G~~v~~~~~~~~~g~g~~~~~----~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~ 622 (706)
.+..| ++||.|+..+.+ |+|.+... ....+..++|+..+++.+ ...++.++|||+||.+++.++.+
T Consensus 17 ~~~~l-~~~~~v~~~d~~---G~G~s~~~~~~~~~~~~~~~~~l~~~l~~~------~~~~~~lvG~S~Gg~~a~~~a~~ 86 (228)
T PF12697_consen 17 LAEAL-ARGYRVIAFDLP---GHGRSDPPPDYSPYSIEDYAEDLAELLDAL------GIKKVILVGHSMGGMIALRLAAR 86 (228)
T ss_dssp HHHHH-HTTSEEEEEECT---TSTTSSSHSSGSGGSHHHHHHHHHHHHHHT------TTSSEEEEEETHHHHHHHHHHHH
T ss_pred HHHHH-hCCCEEEEEecC---CccccccccccCCcchhhhhhhhhhccccc------ccccccccccccccccccccccc
Confidence 45556 589999986665 45555442 223445556665555443 22789999999999999999999
Q ss_pred CCCceeEEEeccCCCC
Q 005240 623 APHLFCCGIARSGSYN 638 (706)
Q Consensus 623 ~p~~~~a~v~~~~~~d 638 (706)
+|+++++++..+|...
T Consensus 87 ~p~~v~~~vl~~~~~~ 102 (228)
T PF12697_consen 87 YPDRVKGLVLLSPPPP 102 (228)
T ss_dssp SGGGEEEEEEESESSS
T ss_pred cccccccceeeccccc
Confidence 9999999999998874
|
... |
| >TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.7e-06 Score=89.00 Aligned_cols=117 Identities=15% Similarity=0.101 Sum_probs=70.6
Q ss_pred EEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCC
Q 005240 486 KYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIP 565 (706)
Q Consensus 486 ~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~ 565 (706)
.+...||..+....+-++ + -+.||++||++... . .......+...+|.|+.++.+
T Consensus 8 ~~~~~~~~~l~y~~~g~~-----~---~~~lvllHG~~~~~-------------~---~~~~~~~~~~~~~~vi~~D~~- 62 (306)
T TIGR01249 8 YLNVSDNHQLYYEQSGNP-----D---GKPVVFLHGGPGSG-------------T---DPGCRRFFDPETYRIVLFDQR- 62 (306)
T ss_pred eEEcCCCcEEEEEECcCC-----C---CCEEEEECCCCCCC-------------C---CHHHHhccCccCCEEEEECCC-
Confidence 344446777765443221 1 13478899975210 0 011222344578999986665
Q ss_pred cCCCCCCCCch----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccC
Q 005240 566 IIGEGDKLPND----RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSG 635 (706)
Q Consensus 566 ~~g~g~~~~~~----~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~ 635 (706)
|+|.+.... ....+...|+...++++ +.+++.++|+||||++++.++.++|++++++|..++
T Consensus 63 --G~G~S~~~~~~~~~~~~~~~~dl~~l~~~l------~~~~~~lvG~S~GG~ia~~~a~~~p~~v~~lvl~~~ 128 (306)
T TIGR01249 63 --GCGKSTPHACLEENTTWDLVADIEKLREKL------GIKNWLVFGGSWGSTLALAYAQTHPEVVTGLVLRGI 128 (306)
T ss_pred --CCCCCCCCCCcccCCHHHHHHHHHHHHHHc------CCCCEEEEEECHHHHHHHHHHHHChHhhhhheeecc
Confidence 455554321 12233444444433332 336799999999999999999999999988887754
|
This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members. |
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.39 E-value=5.9e-06 Score=80.57 Aligned_cols=110 Identities=16% Similarity=0.233 Sum_probs=75.8
Q ss_pred CCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecc-cCCCccccccccceEEecCCcEEEEEe
Q 005240 27 YPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLF-ESPDICLNAVFGSFVWVNNSTLLIFTI 105 (706)
Q Consensus 27 ~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt-~~~~~~~~~~~~~~~wSpDg~~l~~~~ 105 (706)
.|....+.+.+|.+||..++-++ -+...|.++|+++|...+|- .+.+ +++.+.|||||.+|+..+
T Consensus 192 ~pgh~pVtsmqwn~dgt~l~tAS---------~gsssi~iWdpdtg~~~pL~~~glg-----g~slLkwSPdgd~lfaAt 257 (445)
T KOG2139|consen 192 DPGHNPVTSMQWNEDGTILVTAS---------FGSSSIMIWDPDTGQKIPLIPKGLG-----GFSLLKWSPDGDVLFAAT 257 (445)
T ss_pred CCCCceeeEEEEcCCCCEEeecc---------cCcceEEEEcCCCCCcccccccCCC-----ceeeEEEcCCCCEEEEec
Confidence 34455789999999999998766 45578889999999888886 2332 378899999999887664
Q ss_pred cCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccC-CCceecCCCceEeeeeeCC
Q 005240 106 PSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD-GTAKDFGTPAVYTAVEPSP 184 (706)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~-g~~~~lt~~~~~~~~~~Sp 184 (706)
.+ ....||-..-. ...+.+...+.+....|||
T Consensus 258 ~d-----------------------------------------------avfrlw~e~q~wt~erw~lgsgrvqtacWsp 290 (445)
T KOG2139|consen 258 CD-----------------------------------------------AVFRLWQENQSWTKERWILGSGRVQTACWSP 290 (445)
T ss_pred cc-----------------------------------------------ceeeeehhcccceecceeccCCceeeeeecC
Confidence 32 01233311111 1222233235778889999
Q ss_pred CCcEEEEEeeccC
Q 005240 185 DQKYVLITSMHRP 197 (706)
Q Consensus 185 DG~~i~~~~~~~~ 197 (706)
+|++|+|+....+
T Consensus 291 cGsfLLf~~sgsp 303 (445)
T KOG2139|consen 291 CGSFLLFACSGSP 303 (445)
T ss_pred CCCEEEEEEcCCc
Confidence 9999999887653
|
|
| >TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH | Back alignment and domain information |
|---|
Probab=98.39 E-value=5e-06 Score=82.09 Aligned_cols=72 Identities=21% Similarity=0.217 Sum_probs=48.2
Q ss_pred HCCeEEEEcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEe
Q 005240 553 ARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIA 632 (706)
Q Consensus 553 ~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~ 632 (706)
+.+|.|+..+.+ |+|.+..... .++...++.+.+. + ..++.++||||||++++.++.++|++++++|.
T Consensus 28 ~~~~~vi~~d~~---G~G~s~~~~~------~~~~~~~~~~~~~--~-~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~il 95 (245)
T TIGR01738 28 SAHFTLHLVDLP---GHGRSRGFGP------LSLADAAEAIAAQ--A-PDPAIWLGWSLGGLVALHIAATHPDRVRALVT 95 (245)
T ss_pred ccCeEEEEecCC---cCccCCCCCC------cCHHHHHHHHHHh--C-CCCeEEEEEcHHHHHHHHHHHHCHHhhheeeE
Confidence 467999986665 4554422111 1122233333332 2 26899999999999999999999999999887
Q ss_pred ccCC
Q 005240 633 RSGS 636 (706)
Q Consensus 633 ~~~~ 636 (706)
.++.
T Consensus 96 ~~~~ 99 (245)
T TIGR01738 96 VASS 99 (245)
T ss_pred ecCC
Confidence 7653
|
This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria. |
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.39 E-value=6.4e-06 Score=78.83 Aligned_cols=252 Identities=13% Similarity=0.147 Sum_probs=138.5
Q ss_pred CcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCC-c---cccccccceEEecCCcEEEEEec
Q 005240 31 AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD-I---CLNAVFGSFVWVNNSTLLIFTIP 106 (706)
Q Consensus 31 ~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~-~---~~~~~~~~~~wSpDg~~l~~~~~ 106 (706)
..+..++|||||++|+..+- +|.-++| |-.+|+.++-..... + .....+..+.||.|.+.|+..+.
T Consensus 214 Sh~EcA~FSPDgqyLvsgSv--------DGFiEVW--ny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsq 283 (508)
T KOG0275|consen 214 SHVECARFSPDGQYLVSGSV--------DGFIEVW--NYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQ 283 (508)
T ss_pred cchhheeeCCCCceEeeccc--------cceeeee--hhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCc
Confidence 35677899999999987653 5555665 555676554221111 0 11223556778888888775432
Q ss_pred CCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCC-ceecCCC--ceEeeeee
Q 005240 107 SSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGTP--AVYTAVEP 182 (706)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~-~~~lt~~--~~~~~~~~ 182 (706)
.+.|-++.+ +|+ .++.... ..+.++.|
T Consensus 284 -------------------------------------------------DGkIKvWri~tG~ClRrFdrAHtkGvt~l~F 314 (508)
T KOG0275|consen 284 -------------------------------------------------DGKIKVWRIETGQCLRRFDRAHTKGVTCLSF 314 (508)
T ss_pred -------------------------------------------------CCcEEEEEEecchHHHHhhhhhccCeeEEEE
Confidence 145555555 664 3444322 57889999
Q ss_pred CCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEe
Q 005240 183 SPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEA 262 (706)
Q Consensus 183 SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~ 262 (706)
|.|+..|+-.+.+ ..+.+--+.+++. |....+.. ..+....|++||.. |.-.
T Consensus 315 SrD~SqiLS~sfD-------------~tvRiHGlKSGK~--LKEfrGHs----------Syvn~a~ft~dG~~-iisa-- 366 (508)
T KOG0275|consen 315 SRDNSQILSASFD-------------QTVRIHGLKSGKC--LKEFRGHS----------SYVNEATFTDDGHH-IISA-- 366 (508)
T ss_pred ccCcchhhccccc-------------ceEEEeccccchh--HHHhcCcc----------ccccceEEcCCCCe-EEEe--
Confidence 9999999765544 3566666664432 22222211 11235689999987 4322
Q ss_pred ccCCCCccccCccceeeeecCCCCCCC-CceEEe--ecccccccceecCCC-ceEEEEeeccccceEEEEEcCCCCCCCc
Q 005240 263 QDRGDANVEVSPRDIIYTQPAEPAEGE-KPEILH--KLDLRFRSVSWCDDS-LALVNETWYKTSQTRTWLVCPGSKDVAP 338 (706)
Q Consensus 263 ~~~~~~~~~~~~~~~l~~~d~~~~~~~-~~~~l~--~~~~~~~~~~wspDg-~~l~~~~~~~~~~~~l~~~d~~~~~~~~ 338 (706)
... +.+.+|+. .++ ...... ..+..+.++-..|.+ ..++.. + ..+.+|++++.+. -.
T Consensus 367 SsD----------gtvkvW~~---KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVC-N---rsntv~imn~qGQ--vV 427 (508)
T KOG0275|consen 367 SSD----------GTVKVWHG---KTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVC-N---RSNTVYIMNMQGQ--VV 427 (508)
T ss_pred cCC----------ccEEEecC---cchhhhhhccCCCCcccceeEEEcCCCCceEEEE-c---CCCeEEEEeccce--EE
Confidence 111 23556655 222 222221 234455555555654 334432 1 3456999999872 22
Q ss_pred eeeecCcccccccCCCCCc-eEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeeeccc
Q 005240 339 RVLFDRVFENVYSDPGSPM-MTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESN 414 (706)
Q Consensus 339 ~~l~~~~~~~~~~~~~~~~-~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~ 414 (706)
+....+.-+ -|.|. -..||.|.|+|.... ...||.+...+|+.++.....
T Consensus 428 rsfsSGkRE-----gGdFi~~~lSpkGewiYcigE---------------------D~vlYCF~~~sG~LE~tl~Vh 478 (508)
T KOG0275|consen 428 RSFSSGKRE-----GGDFINAILSPKGEWIYCIGE---------------------DGVLYCFSVLSGKLERTLPVH 478 (508)
T ss_pred eeeccCCcc-----CCceEEEEecCCCcEEEEEcc---------------------CcEEEEEEeecCceeeeeecc
Confidence 222222111 12231 335889988877641 125778888888887765544
|
|
| >COG4188 Predicted dienelactone hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.8e-06 Score=86.39 Aligned_cols=126 Identities=17% Similarity=0.099 Sum_probs=83.2
Q ss_pred eEEEEEEcc-CCeEEEEEEEecCCCCCC-CCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEE
Q 005240 482 KEMIKYQRK-DGVPLTATLYLPPGYDQS-KDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 559 (706)
Q Consensus 482 ~~~~~~~~~-dg~~i~~~l~~P~~~~~~-~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~ 559 (706)
...+++... .+.+++..++.|...... ..+++|+|++.||-+. . ..+ +...++.|++.||+|.
T Consensus 38 ~~~i~~~~~~r~~~~~v~~~~p~~~~~~~~~~~~PlvvlshG~Gs--------~---~~~----f~~~A~~lAs~Gf~Va 102 (365)
T COG4188 38 FVTITLNDPQRDRERPVDLRLPQGGTGTVALYLLPLVVLSHGSGS--------Y---VTG----FAWLAEHLASYGFVVA 102 (365)
T ss_pred EEEEeccCcccCCccccceeccCCCccccccCcCCeEEecCCCCC--------C---ccc----hhhhHHHHhhCceEEE
Confidence 445555543 366888899999864320 0146899999999531 0 111 2245788999999998
Q ss_pred EcCCCCcCCCCCCCC--------chhhHHHHHHHHHHHHHHHHHc---C----CCCCCcEEEEEechHHHHHHHHHHhC
Q 005240 560 AGPSIPIIGEGDKLP--------NDRFVEQLVSSAEAAVEEVVRR---G----VADPSRIAVGGHSYGAFMTAHLLAHA 623 (706)
Q Consensus 560 ~~~~~~~~g~g~~~~--------~~~~~~~~~~D~~~~~~~l~~~---~----~id~~~i~i~G~S~GG~~a~~~~~~~ 623 (706)
.++.-++. .|.... ....+.+...|+...+++|.+. + .+|+.||++.|||+||+.++.++...
T Consensus 103 ~~~hpgs~-~~~~~~~~~~~~~~~p~~~~erp~dis~lLd~L~~~~~sP~l~~~ld~~~Vgv~GhS~GG~T~m~laGA~ 180 (365)
T COG4188 103 APDHPGSN-AGGAPAAYAGPGSYAPAEWWERPLDISALLDALLQLTASPALAGRLDPQRVGVLGHSFGGYTAMELAGAE 180 (365)
T ss_pred eccCCCcc-cccCChhhcCCcccchhhhhcccccHHHHHHHHHHhhcCcccccccCccceEEEecccccHHHHHhcccc
Confidence 85543322 111111 1112234577899999999887 4 38999999999999999999887544
|
|
| >PF08538 DUF1749: Protein of unknown function (DUF1749); InterPro: IPR013744 This is a plant and fungal family of unknown function | Back alignment and domain information |
|---|
Probab=98.38 E-value=3.1e-06 Score=83.29 Aligned_cols=110 Identities=14% Similarity=0.095 Sum_probs=66.3
Q ss_pred eEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCC-cCCCCCCCCchhhHHHHHHHHHHHHHH
Q 005240 514 PCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIP-IIGEGDKLPNDRFVEQLVSSAEAAVEE 592 (706)
Q Consensus 514 p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~-~~g~g~~~~~~~~~~~~~~D~~~~~~~ 592 (706)
-+||+|-| ..++.... .+....+..|...||.|+...-+. ..|+|.. ..+..++|+..+|+|
T Consensus 34 ~~llfIGG-----------LtDGl~tv-pY~~~La~aL~~~~wsl~q~~LsSSy~G~G~~-----SL~~D~~eI~~~v~y 96 (303)
T PF08538_consen 34 NALLFIGG-----------LTDGLLTV-PYLPDLAEALEETGWSLFQVQLSSSYSGWGTS-----SLDRDVEEIAQLVEY 96 (303)
T ss_dssp SEEEEE-------------TT--TT-S-TCHHHHHHHHT-TT-EEEEE--GGGBTTS-S-------HHHHHHHHHHHHHH
T ss_pred cEEEEECC-----------CCCCCCCC-chHHHHHHHhccCCeEEEEEEecCccCCcCcc-----hhhhHHHHHHHHHHH
Confidence 47888866 34443322 122244555656899998744432 3355543 466779999999999
Q ss_pred HHHcC--CCCCCcEEEEEechHHHHHHHHHHhCC-----CceeEEEeccCCCCCC
Q 005240 593 VVRRG--VADPSRIAVGGHSYGAFMTAHLLAHAP-----HLFCCGIARSGSYNKT 640 (706)
Q Consensus 593 l~~~~--~id~~~i~i~G~S~GG~~a~~~~~~~p-----~~~~a~v~~~~~~d~~ 640 (706)
|+... .-..++|.+||||-|..-++.++.+.. ..+.++|+.+|+.|..
T Consensus 97 lr~~~~g~~~~~kIVLmGHSTGcQdvl~Yl~~~~~~~~~~~VdG~ILQApVSDRE 151 (303)
T PF08538_consen 97 LRSEKGGHFGREKIVLMGHSTGCQDVLHYLSSPNPSPSRPPVDGAILQAPVSDRE 151 (303)
T ss_dssp HHHHS------S-EEEEEECCHHHHHHHHHHH-TT---CCCEEEEEEEEE---TT
T ss_pred HHHhhccccCCccEEEEecCCCcHHHHHHHhccCccccccceEEEEEeCCCCChh
Confidence 99872 235689999999999999999987762 5699999999998854
|
This family contains many hypothetical proteins. ; PDB: 2Q0X_B. |
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.37 E-value=5.5e-05 Score=78.27 Aligned_cols=236 Identities=15% Similarity=0.165 Sum_probs=139.2
Q ss_pred ccceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecc---cC
Q 005240 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLF---ES 80 (706)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt---~~ 80 (706)
-+++.++++.. -.+....|. ...++...+||-+..-..+...++ .........||.+. ..+....+. ++
T Consensus 145 ~nev~f~~~~~--f~~~~~kl~----~~~i~~f~lSpgp~~~~vAvyvPe-~kGaPa~vri~~~~-~~~~~~~~a~ksFF 216 (566)
T KOG2315|consen 145 SNEVQFYDLGS--FKTIQHKLS----VSGITMLSLSPGPEPPFVAVYVPE-KKGAPASVRIYKYP-EEGQHQPVANKSFF 216 (566)
T ss_pred cceEEEEecCC--ccceeeeee----ccceeeEEecCCCCCceEEEEccC-CCCCCcEEEEeccc-cccccchhhhcccc
Confidence 35778888855 333333332 335788899997554433333222 12223446677666 333333332 12
Q ss_pred CCccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEE
Q 005240 81 PDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLV 160 (706)
Q Consensus 81 ~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~ 160 (706)
..+ --.+.|.+-|.-|++.+..+- |.....|++...||
T Consensus 217 kad-----kvqm~WN~~gt~LLvLastdV-------------------------------------Dktn~SYYGEq~Ly 254 (566)
T KOG2315|consen 217 KAD-----KVQMKWNKLGTALLVLASTDV-------------------------------------DKTNASYYGEQTLY 254 (566)
T ss_pred ccc-----eeEEEeccCCceEEEEEEEee-------------------------------------cCCCccccccceEE
Confidence 211 226789998987666532111 11112245778999
Q ss_pred EEccCCC--ceecCCCceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccC
Q 005240 161 LGSLDGT--AKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYN 238 (706)
Q Consensus 161 ~~~l~g~--~~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~ 238 (706)
+++.+|+ ..+|...+.+.++.|||+|+..++...-.+ ..+-++|+.+..+-.+..++..
T Consensus 255 ll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMP-----------Akvtifnlr~~~v~df~egpRN-------- 315 (566)
T KOG2315|consen 255 LLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMP-----------AKVTIFNLRGKPVFDFPEGPRN-------- 315 (566)
T ss_pred EEEecCceEEEecCCCCCceEEEECCCCCEEEEEEeccc-----------ceEEEEcCCCCEeEeCCCCCcc--------
Confidence 9999883 345554588999999999999888776653 5788999998866555444321
Q ss_pred ccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeec-ccccccceecCCCceEEEEe
Q 005240 239 SVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL-DLRFRSVSWCDDSLALVNET 317 (706)
Q Consensus 239 ~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~-~~~~~~~~wspDg~~l~~~~ 317 (706)
.+-|+|.|+. |++. --.+ -.+.+-+||+ .. .+.|... ........|+|||.+|+.+.
T Consensus 316 -------~~~fnp~g~i-i~lA-GFGN--------L~G~mEvwDv---~n--~K~i~~~~a~~tt~~eW~PdGe~flTAT 373 (566)
T KOG2315|consen 316 -------TAFFNPHGNI-ILLA-GFGN--------LPGDMEVWDV---PN--RKLIAKFKAANTTVFEWSPDGEYFLTAT 373 (566)
T ss_pred -------ceEECCCCCE-EEEe-ecCC--------CCCceEEEec---cc--hhhccccccCCceEEEEcCCCcEEEEEe
Confidence 6789999985 4433 1111 2234667787 32 4445443 33445678999999998765
Q ss_pred ec----cccceEEEEEc
Q 005240 318 WY----KTSQTRTWLVC 330 (706)
Q Consensus 318 ~~----~~~~~~l~~~d 330 (706)
.. -+...+||-+.
T Consensus 374 TaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 374 TAPRLRVDNGIKIWHYT 390 (566)
T ss_pred ccccEEecCCeEEEEec
Confidence 32 23444555554
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00021 Score=68.46 Aligned_cols=232 Identities=11% Similarity=0.094 Sum_probs=135.0
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCc--eeecccCCCccccccccceEEecCCcEEEEEecCCC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE--AKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSR 109 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~--~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~ 109 (706)
.+...+|+|||..+|-. ....+|+++++.+-. ...+.-+.+ .+-.+.|.+|+..|+..+.+
T Consensus 49 eI~~~~F~P~gs~~aSg----------G~Dr~I~LWnv~gdceN~~~lkgHsg-----AVM~l~~~~d~s~i~S~gtD-- 111 (338)
T KOG0265|consen 49 EIYTIKFHPDGSCFASG----------GSDRAIVLWNVYGDCENFWVLKGHSG-----AVMELHGMRDGSHILSCGTD-- 111 (338)
T ss_pred eEEEEEECCCCCeEeec----------CCcceEEEEeccccccceeeeccccc-----eeEeeeeccCCCEEEEecCC--
Confidence 56778999999999875 334788888865432 222322222 37789999999998876421
Q ss_pred CCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CC-CceecCCC-ceEeeeeeCCCC
Q 005240 110 RDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTP-AVYTAVEPSPDQ 186 (706)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g-~~~~lt~~-~~~~~~~~SpDG 186 (706)
.+++.+|+ +| ..++.... ..+..+.-+.=|
T Consensus 112 -----------------------------------------------k~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg 144 (338)
T KOG0265|consen 112 -----------------------------------------------KTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRG 144 (338)
T ss_pred -----------------------------------------------ceEEEEecccceeeehhccccceeeecCccccC
Confidence 57888999 77 45555444 455566655566
Q ss_pred cEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCC
Q 005240 187 KYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRG 266 (706)
Q Consensus 187 ~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~ 266 (706)
-.++-+... ..++.+||+-.+...++..... ....+.|.-++.+ +. . ++
T Consensus 145 ~~lv~Sgsd------------D~t~kl~D~R~k~~~~t~~~ky-------------qltAv~f~d~s~q-v~-s----gg 193 (338)
T KOG0265|consen 145 PQLVCSGSD------------DGTLKLWDIRKKEAIKTFENKY-------------QLTAVGFKDTSDQ-VI-S----GG 193 (338)
T ss_pred CeEEEecCC------------CceEEEEeecccchhhccccce-------------eEEEEEecccccc-ee-e----cc
Confidence 666554433 2589999988655433322111 1225577766665 21 1 11
Q ss_pred CCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCcc
Q 005240 267 DANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVF 346 (706)
Q Consensus 267 ~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~ 346 (706)
- .+.|.+||+. .+...-.|......+..+.-|++|..+...+.+ ...++|-+-.--.......++....
T Consensus 194 I-------dn~ikvWd~r--~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd--~tvrvwd~rp~~p~~R~v~if~g~~ 262 (338)
T KOG0265|consen 194 I-------DNDIKVWDLR--KNDGLYTLSGHADTITGLSLSRYGSFLLSNSMD--NTVRVWDVRPFAPSQRCVKIFQGHI 262 (338)
T ss_pred c-------cCceeeeccc--cCcceEEeecccCceeeEEeccCCCcccccccc--ceEEEEEecccCCCCceEEEeecch
Confidence 1 1236677762 222233455566778889999999988865433 2344554433332111133444433
Q ss_pred cccccCCCCCceEeccCCCEEEEee
Q 005240 347 ENVYSDPGSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 347 ~~~~~~~~~~~~~~s~dg~~l~~~~ 371 (706)
..... ....-+|||+++.+-+..
T Consensus 263 hnfek--nlL~cswsp~~~~i~ags 285 (338)
T KOG0265|consen 263 HNFEK--NLLKCSWSPNGTKITAGS 285 (338)
T ss_pred hhhhh--hcceeeccCCCCcccccc
Confidence 22211 122356999999887654
|
|
| >TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily | Back alignment and domain information |
|---|
Probab=98.34 E-value=6.3e-06 Score=83.72 Aligned_cols=78 Identities=17% Similarity=0.164 Sum_probs=53.1
Q ss_pred HHHHCCeEEEEcCCCCcCCCCCCCCch-----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCC
Q 005240 550 IFLARRFAVLAGPSIPIIGEGDKLPND-----RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAP 624 (706)
Q Consensus 550 ~l~~~G~~v~~~~~~~~~g~g~~~~~~-----~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p 624 (706)
.+.+.||.|+.++.+ |+|.+.... ...+...+|+.+.++.+ +..++.++||||||.+++.++.++|
T Consensus 48 ~l~~~g~~vi~~d~~---G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~liG~S~Gg~ia~~~a~~~p 118 (288)
T TIGR01250 48 LLKEEGREVIMYDQL---GCGYSDQPDDSDELWTIDYFVDELEEVREKL------GLDKFYLLGHSWGGMLAQEYALKYG 118 (288)
T ss_pred HHHhcCCEEEEEcCC---CCCCCCCCCcccccccHHHHHHHHHHHHHHc------CCCcEEEEEeehHHHHHHHHHHhCc
Confidence 334459999996665 444443221 12344455554443322 3456999999999999999999999
Q ss_pred CceeEEEeccCC
Q 005240 625 HLFCCGIARSGS 636 (706)
Q Consensus 625 ~~~~a~v~~~~~ 636 (706)
+++++++..++.
T Consensus 119 ~~v~~lvl~~~~ 130 (288)
T TIGR01250 119 QHLKGLIISSML 130 (288)
T ss_pred cccceeeEeccc
Confidence 999999987764
|
This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase |
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=98.33 E-value=7.2e-06 Score=82.95 Aligned_cols=221 Identities=10% Similarity=0.098 Sum_probs=130.8
Q ss_pred ceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccc
Q 005240 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (706)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 85 (706)
.|+|+++-. .++-.+...++.. .+..+.||++|..+.-++. ...|-++|+++|+..+-......
T Consensus 238 ~vklW~vy~--~~~~lrtf~gH~k--~Vrd~~~s~~g~~fLS~sf----------D~~lKlwDtETG~~~~~f~~~~~-- 301 (503)
T KOG0282|consen 238 LVKLWNVYD--DRRCLRTFKGHRK--PVRDASFNNCGTSFLSASF----------DRFLKLWDTETGQVLSRFHLDKV-- 301 (503)
T ss_pred eEEEEEEec--Ccceehhhhcchh--hhhhhhccccCCeeeeeec----------ceeeeeeccccceEEEEEecCCC--
Confidence 578888865 3344444443333 4889999999999976643 36777889999986654333322
Q ss_pred cccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-
Q 005240 86 NAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL- 164 (706)
Q Consensus 86 ~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l- 164 (706)
+..+.+.||+..+++... ....|..+|.
T Consensus 302 ---~~cvkf~pd~~n~fl~G~------------------------------------------------sd~ki~~wDiR 330 (503)
T KOG0282|consen 302 ---PTCVKFHPDNQNIFLVGG------------------------------------------------SDKKIRQWDIR 330 (503)
T ss_pred ---ceeeecCCCCCcEEEEec------------------------------------------------CCCcEEEEecc
Confidence 456788999965555421 1146777787
Q ss_pred CCCc-eecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCC
Q 005240 165 DGTA-KDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVRE 242 (706)
Q Consensus 165 ~g~~-~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~ 242 (706)
+|+. +..... +.+..+.|-|+|++.+-++... .+.+|+.......++........+|
T Consensus 331 s~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdk-------------s~riWe~~~~v~ik~i~~~~~hsmP-------- 389 (503)
T KOG0282|consen 331 SGKVVQEYDRHLGAILDITFVDEGRRFISSSDDK-------------SVRIWENRIPVPIKNIADPEMHTMP-------- 389 (503)
T ss_pred chHHHHHHHhhhhheeeeEEccCCceEeeeccCc-------------cEEEEEcCCCccchhhcchhhccCc--------
Confidence 6643 333333 6788999999999988666543 5677776644333332222222233
Q ss_pred CCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCC-CCCCCceEEee--cccccccceecCCCceEEEEeec
Q 005240 243 GMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEP-AEGEKPEILHK--LDLRFRSVSWCDDSLALVNETWY 319 (706)
Q Consensus 243 g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~~~~~~l~~--~~~~~~~~~wspDg~~l~~~~~~ 319 (706)
.+.-+|+++. ++ .+... +.|++..+.+ +.-...++... ..+.-..+.|||||.+|+...
T Consensus 390 ---~~~~~P~~~~-~~---aQs~d---------N~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGd-- 451 (503)
T KOG0282|consen 390 ---CLTLHPNGKW-FA---AQSMD---------NYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGD-- 451 (503)
T ss_pred ---ceecCCCCCe-eh---hhccC---------ceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeec--
Confidence 5567777775 22 11111 1233333311 11112222222 245566788999999998764
Q ss_pred cccceEEEEEcCCCC
Q 005240 320 KTSQTRTWLVCPGSK 334 (706)
Q Consensus 320 ~~~~~~l~~~d~~~~ 334 (706)
....++.+|..+.
T Consensus 452 --sdG~v~~wdwkt~ 464 (503)
T KOG0282|consen 452 --SDGKVNFWDWKTT 464 (503)
T ss_pred --CCccEEEeechhh
Confidence 4457888988773
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.2e-05 Score=79.73 Aligned_cols=193 Identities=16% Similarity=0.215 Sum_probs=117.3
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeec-ccCCCccccccccceEEecCCcEEEEEecCCCC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPL-FESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l-t~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~ 110 (706)
.+..++|+|+|++|...+. .|...||-. .+=.-+-+ -.+.. .++...||++|.+++....
T Consensus 98 ~V~~v~WtPeGRRLltgs~--------SGEFtLWNg--~~fnFEtilQaHDs-----~Vr~m~ws~~g~wmiSgD~---- 158 (464)
T KOG0284|consen 98 PVNVVRWTPEGRRLLTGSQ--------SGEFTLWNG--TSFNFETILQAHDS-----PVRTMKWSHNGTWMISGDK---- 158 (464)
T ss_pred ceeeEEEcCCCceeEeecc--------cccEEEecC--ceeeHHHHhhhhcc-----cceeEEEccCCCEEEEcCC----
Confidence 4778899999999988764 566777732 11111111 11222 2788999999998775421
Q ss_pred CCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCC-CceecCCC--ceEeeeeeCCCCc
Q 005240 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TAKDFGTP--AVYTAVEPSPDQK 187 (706)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g-~~~~lt~~--~~~~~~~~SpDG~ 187 (706)
.+-|..++.+- .++.+... ..++.++|||.-.
T Consensus 159 ---------------------------------------------gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDs 193 (464)
T KOG0284|consen 159 ---------------------------------------------GGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDS 193 (464)
T ss_pred ---------------------------------------------CceEEecccchhhhHHhhHhhhhhhheeccCCCCc
Confidence 13333444422 12222222 5678999999555
Q ss_pred EEEEEeeccCcccccccccccceEEEEecC-CCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCC
Q 005240 188 YVLITSMHRPYSYKVPCARFSQKVQVWTTD-GKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRG 266 (706)
Q Consensus 188 ~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~ 266 (706)
..+--+.+ ..|.+||.- .++.+.| .+.+.+ ++.+.|.|... |++.. +
T Consensus 194 kF~t~SdD-------------g~ikiWdf~~~kee~vL-~GHgwd------------VksvdWHP~kg--Liasg----s 241 (464)
T KOG0284|consen 194 KFLTCSDD-------------GTIKIWDFRMPKEERVL-RGHGWD------------VKSVDWHPTKG--LIASG----S 241 (464)
T ss_pred eeEEecCC-------------CeEEEEeccCCchhhee-ccCCCC------------cceeccCCccc--eeEEc----c
Confidence 54333322 478999987 4555555 444332 56789999876 43331 1
Q ss_pred CCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCC
Q 005240 267 DANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (706)
Q Consensus 267 ~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~ 333 (706)
+. ..|.+||.. .+.++-.|..+...+..+.|+|++.+|+..+.+. .+-++|+.+
T Consensus 242 kD-------nlVKlWDpr--Sg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~----~~kv~DiR~ 295 (464)
T KOG0284|consen 242 KD-------NLVKLWDPR--SGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQ----SCKVFDIRT 295 (464)
T ss_pred CC-------ceeEeecCC--CcchhhhhhhccceEEEEEEcCCCCeeEEccCCc----eEEEEehhH
Confidence 11 147788862 4556666777788889999999999888765322 355666553
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00017 Score=71.56 Aligned_cols=143 Identities=15% Similarity=0.155 Sum_probs=86.8
Q ss_pred ceEEEEccCC-CceecCCCceEeeeeeC-CCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCC
Q 005240 157 AQLVLGSLDG-TAKDFGTPAVYTAVEPS-PDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIP 234 (706)
Q Consensus 157 ~~l~~~~l~g-~~~~lt~~~~~~~~~~S-pDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p 234 (706)
.+|++++.++ +.+.+.... ...+.+. +|| .|++.... .+.++|+.+++.+.+..........
T Consensus 22 ~~i~~~~~~~~~~~~~~~~~-~~G~~~~~~~g-~l~v~~~~--------------~~~~~d~~~g~~~~~~~~~~~~~~~ 85 (246)
T PF08450_consen 22 GRIYRVDPDTGEVEVIDLPG-PNGMAFDRPDG-RLYVADSG--------------GIAVVDPDTGKVTVLADLPDGGVPF 85 (246)
T ss_dssp TEEEEEETTTTEEEEEESSS-EEEEEEECTTS-EEEEEETT--------------CEEEEETTTTEEEEEEEEETTCSCT
T ss_pred CEEEEEECCCCeEEEEecCC-CceEEEEccCC-EEEEEEcC--------------ceEEEecCCCcEEEEeeccCCCccc
Confidence 6899999965 444344333 5566666 665 55555432 4566698888888776652111001
Q ss_pred cccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEE
Q 005240 235 VCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALV 314 (706)
Q Consensus 235 ~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~ 314 (706)
....++.+.|+|+ ||+........... ..+.||+++. + ++.+.+...-.....+.|+||++.|+
T Consensus 86 -------~~~ND~~vd~~G~--ly~t~~~~~~~~~~---~~g~v~~~~~---~-~~~~~~~~~~~~pNGi~~s~dg~~ly 149 (246)
T PF08450_consen 86 -------NRPNDVAVDPDGN--LYVTDSGGGGASGI---DPGSVYRIDP---D-GKVTVVADGLGFPNGIAFSPDGKTLY 149 (246)
T ss_dssp -------EEEEEEEE-TTS---EEEEEECCBCTTCG---GSEEEEEEET---T-SEEEEEEEEESSEEEEEEETTSSEEE
T ss_pred -------CCCceEEEcCCCC--EEEEecCCCccccc---cccceEEECC---C-CeEEEEecCcccccceEECCcchhee
Confidence 1233778999997 77664332221111 1156899887 4 56666665556667899999999888
Q ss_pred EEeeccccceEEEEEcCCCC
Q 005240 315 NETWYKTSQTRTWLVCPGSK 334 (706)
Q Consensus 315 ~~~~~~~~~~~l~~~d~~~~ 334 (706)
+... ...+||+++++..
T Consensus 150 v~ds---~~~~i~~~~~~~~ 166 (246)
T PF08450_consen 150 VADS---FNGRIWRFDLDAD 166 (246)
T ss_dssp EEET---TTTEEEEEEEETT
T ss_pred eccc---ccceeEEEecccc
Confidence 7542 3456999998753
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00029 Score=82.56 Aligned_cols=194 Identities=12% Similarity=0.055 Sum_probs=110.3
Q ss_pred cccceeeCCC-CCeEEEEeeccccccccCCceeEEEEEcCCCceeecc-cCCCccccccccceEEec-CCcEEEEEecCC
Q 005240 32 KINFVSWSPD-GKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLF-ESPDICLNAVFGSFVWVN-NSTLLIFTIPSS 108 (706)
Q Consensus 32 ~~~~~~~SPD-G~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt-~~~~~~~~~~~~~~~wSp-Dg~~l~~~~~~~ 108 (706)
.+....|+|. +++||... ....|.++|+.+++..... .+.. .+..+.|+| |+..|+..+.
T Consensus 534 ~v~~l~~~~~~~~~las~~----------~Dg~v~lWd~~~~~~~~~~~~H~~-----~V~~l~~~p~~~~~L~Sgs~-- 596 (793)
T PLN00181 534 KLSGICWNSYIKSQVASSN----------FEGVVQVWDVARSQLVTEMKEHEK-----RVWSIDYSSADPTLLASGSD-- 596 (793)
T ss_pred ceeeEEeccCCCCEEEEEe----------CCCeEEEEECCCCeEEEEecCCCC-----CEEEEEEcCCCCCEEEEEcC--
Confidence 4677899885 66665543 2357777888877544332 2222 277899996 7887776532
Q ss_pred CCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCC-ceecCCCceEeeeee-CCC
Q 005240 109 RRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGTPAVYTAVEP-SPD 185 (706)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~-~~~lt~~~~~~~~~~-SpD 185 (706)
.+.|.++|+ ++. ...+.....+..+.| +++
T Consensus 597 -----------------------------------------------Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~ 629 (793)
T PLN00181 597 -----------------------------------------------DGSVKLWSINQGVSIGTIKTKANICCVQFPSES 629 (793)
T ss_pred -----------------------------------------------CCEEEEEECCCCcEEEEEecCCCeEEEEEeCCC
Confidence 146777777 442 233332345667788 467
Q ss_pred CcEEEEEeeccCcccccccccccceEEEEecCCCe--eEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEec
Q 005240 186 QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL--VRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQ 263 (706)
Q Consensus 186 G~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~ 263 (706)
|+.|+..+.. ..|.+||+.... ...+..+. ..+..+.|+ ++.. |+-. ..
T Consensus 630 g~~latgs~d-------------g~I~iwD~~~~~~~~~~~~~h~-------------~~V~~v~f~-~~~~-lvs~-s~ 680 (793)
T PLN00181 630 GRSLAFGSAD-------------HKVYYYDLRNPKLPLCTMIGHS-------------KTVSYVRFV-DSST-LVSS-ST 680 (793)
T ss_pred CCEEEEEeCC-------------CeEEEEECCCCCccceEecCCC-------------CCEEEEEEe-CCCE-EEEE-EC
Confidence 8888766543 379999987543 22222111 123466776 5554 4322 11
Q ss_pred cCCCCccccCccceeeeecCCCC----CCCCceEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCC
Q 005240 264 DRGDANVEVSPRDIIYTQPAEPA----EGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (706)
Q Consensus 264 ~~~~~~~~~~~~~~l~~~d~~~~----~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~ 333 (706)
.+.|.+||+... .......+..+...+..+.|+|++.+|+..+.+ + .+++++...
T Consensus 681 -----------D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D--~--~v~iw~~~~ 739 (793)
T PLN00181 681 -----------DNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSET--N--EVFVYHKAF 739 (793)
T ss_pred -----------CCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCC--C--EEEEEECCC
Confidence 124667776210 011233444455566778899999988876522 3 355555444
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.0013 Score=68.32 Aligned_cols=325 Identities=13% Similarity=0.134 Sum_probs=164.2
Q ss_pred ccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCC
Q 005240 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDP 112 (706)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~ 112 (706)
.....+|++|+.+||.. ...+++.+...+. ..++..... +..+.+||-|.+|.-..+.....
T Consensus 37 ~~v~~~S~~G~lfA~~~-----------~~~v~i~~~~~~~-~~lt~~~~~-----~~~L~fSP~g~yL~T~e~~~i~~- 98 (566)
T KOG2315|consen 37 CNVFAYSNNGRLFAYSD-----------NQVVKVFEIATLK-VVLCVELKK-----TYDLLFSPKGNYLLTWEPWAIYG- 98 (566)
T ss_pred ceeEEEcCCCcEEEEEc-----------CCeEEEEEccCCc-EEEEeccce-----eeeeeeccccccccccccccccc-
Confidence 45678999999999964 3678888877665 334433332 56778999998776442211100
Q ss_pred CCCCCCCCCCceeecCCCcccccccch----h--ccCCchhhhhhhhcccceEEEEccCC---CceecCCCceEeeeeeC
Q 005240 113 PKKTMVPLGPKIQSNEQKNIIISRMTD----N--LLKDEYDESLFDYYTTAQLVLGSLDG---TAKDFGTPAVYTAVEPS 183 (706)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~d~~~~~~~~~~~l~~~~l~g---~~~~lt~~~~~~~~~~S 183 (706)
+.-...+.-..+..+. ......|. . .+.++.|++.........++.+++.+ ...+|.. ..+..+.+|
T Consensus 99 ~~~~~~pn~~v~~vet---~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~-~~i~~f~lS 174 (566)
T KOG2315|consen 99 PKNASNPNVLVYNVET---GVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSV-SGITMLSLS 174 (566)
T ss_pred CCCCCCCceeeeeecc---ceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeeeec-cceeeEEec
Confidence 0000000000000000 00000010 1 34566667777766677888888754 2233332 356788888
Q ss_pred CCCc--EEEEEeeccCcccccccccccceEEEEecC-CCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEE
Q 005240 184 PDQK--YVLITSMHRPYSYKVPCARFSQKVQVWTTD-GKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWV 260 (706)
Q Consensus 184 pDG~--~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~ 260 (706)
|-+. .|++-.-... ..+..+.+|-.. .+....+..-. ++-. ..-.+.|.+-|...|+.+
T Consensus 175 pgp~~~~vAvyvPe~k--------GaPa~vri~~~~~~~~~~~~a~ks-------FFka---dkvqm~WN~~gt~LLvLa 236 (566)
T KOG2315|consen 175 PGPEPPFVAVYVPEKK--------GAPASVRIYKYPEEGQHQPVANKS-------FFKA---DKVQMKWNKLGTALLVLA 236 (566)
T ss_pred CCCCCceEEEEccCCC--------CCCcEEEEeccccccccchhhhcc-------cccc---ceeEEEeccCCceEEEEE
Confidence 8754 4433221111 113455555543 11111111110 1100 012678999898844433
Q ss_pred Ee-ccCCCCccccCccceeeeecCCCCCCCCceEEe-ecccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCc
Q 005240 261 EA-QDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH-KLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAP 338 (706)
Q Consensus 261 ~~-~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~-~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~ 338 (706)
+. .|.... ..=....||.++. + |+-..+. .-.+.+.++.|+|+|+.+++.... ....+-++|+.+. +
T Consensus 237 stdVDktn~--SYYGEq~Lyll~t---~-g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGf--MPAkvtifnlr~~---~ 305 (566)
T KOG2315|consen 237 STDVDKTNA--SYYGEQTLYLLAT---Q-GESVSVPLLKEGPVHDVTWSPSGREFAVVYGF--MPAKVTIFNLRGK---P 305 (566)
T ss_pred EEeecCCCc--cccccceEEEEEe---c-CceEEEecCCCCCceEEEECCCCCEEEEEEec--ccceEEEEcCCCC---E
Confidence 21 121111 1112236888887 4 3333332 336788999999999988765422 3445777787762 2
Q ss_pred eeee-cCcccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeeecccchh
Q 005240 339 RVLF-DRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREK 417 (706)
Q Consensus 339 ~~l~-~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~ 417 (706)
+--+ ++.... .-|+|-|.+|++.- -|..+ | .+-.+|+.+- +.|.....
T Consensus 306 v~df~egpRN~---------~~fnp~g~ii~lAG--------------FGNL~-G---~mEvwDv~n~--K~i~~~~a-- 354 (566)
T KOG2315|consen 306 VFDFPEGPRNT---------AFFNPHGNIILLAG--------------FGNLP-G---DMEVWDVPNR--KLIAKFKA-- 354 (566)
T ss_pred eEeCCCCCccc---------eEECCCCCEEEEee--------------cCCCC-C---ceEEEeccch--hhcccccc--
Confidence 2222 211111 44799999887763 11110 1 1334565542 22222211
Q ss_pred hhhhhhhhccCCCceecccCCCEEEEEEecC
Q 005240 418 YFETAVALVFGQGEEDINLNQLKILTSKESK 448 (706)
Q Consensus 418 ~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~ 448 (706)
.+.....|+|||++|+....++
T Consensus 355 ---------~~tt~~eW~PdGe~flTATTaP 376 (566)
T KOG2315|consen 355 ---------ANTTVFEWSPDGEYFLTATTAP 376 (566)
T ss_pred ---------CCceEEEEcCCCcEEEEEeccc
Confidence 1233578999999888765553
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.00015 Score=70.12 Aligned_cols=100 Identities=14% Similarity=0.150 Sum_probs=60.7
Q ss_pred CCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeecccc
Q 005240 243 GMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTS 322 (706)
Q Consensus 243 g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~ 322 (706)
|..-++||+|... ++.. +...+ +.+|+||+ ..-+...+.-....+..+.|.|.-.+|+... +
T Consensus 320 g~g~lafs~Ds~y-~aTr---nd~~P-------nalW~Wdl---q~l~l~avLiQk~piraf~WdP~~prL~vct----g 381 (447)
T KOG4497|consen 320 GAGKLAFSCDSTY-AATR---NDKYP-------NALWLWDL---QNLKLHAVLIQKHPIRAFEWDPGRPRLVVCT----G 381 (447)
T ss_pred ccceeeecCCceE-Eeee---cCCCC-------ceEEEEec---hhhhhhhhhhhccceeEEEeCCCCceEEEEc----C
Confidence 3447899999875 4422 22222 35999998 3333333444466778899999988887754 5
Q ss_pred ceEEEEEcCCCCCCCceeeecCcccccccCCC--CCceEeccCCCEEEEee
Q 005240 323 QTRTWLVCPGSKDVAPRVLFDRVFENVYSDPG--SPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 323 ~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~s~dg~~l~~~~ 371 (706)
..+||...+.+. +.+--. .+| ...+.|.-+|..++...
T Consensus 382 ~srLY~W~psg~----~~V~vP-------~~GF~i~~l~W~~~g~~i~l~~ 421 (447)
T KOG4497|consen 382 KSRLYFWAPSGP----RVVGVP-------KKGFNIQKLQWLQPGEFIVLCG 421 (447)
T ss_pred CceEEEEcCCCc----eEEecC-------CCCceeeeEEecCCCcEEEEEc
Confidence 668999988872 332100 111 11255777777766553
|
|
| >PRK11071 esterase YqiA; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.1e-05 Score=74.32 Aligned_cols=64 Identities=11% Similarity=0.076 Sum_probs=42.3
Q ss_pred CCeEEEEcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEec
Q 005240 554 RRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIAR 633 (706)
Q Consensus 554 ~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~ 633 (706)
.+|.|++++-+ |++ . +..+.++.+.++. +.+++.++|+|+||++++.++.++|. + ++..
T Consensus 31 ~~~~v~~~dl~---g~~---------~----~~~~~l~~l~~~~--~~~~~~lvG~S~Gg~~a~~~a~~~~~--~-~vl~ 89 (190)
T PRK11071 31 PDIEMIVPQLP---PYP---------A----DAAELLESLVLEH--GGDPLGLVGSSLGGYYATWLSQCFML--P-AVVV 89 (190)
T ss_pred CCCeEEeCCCC---CCH---------H----HHHHHHHHHHHHc--CCCCeEEEEECHHHHHHHHHHHHcCC--C-EEEE
Confidence 37988886654 231 1 2333344444432 23689999999999999999999973 3 3566
Q ss_pred cCCCC
Q 005240 634 SGSYN 638 (706)
Q Consensus 634 ~~~~d 638 (706)
+|..+
T Consensus 90 ~~~~~ 94 (190)
T PRK11071 90 NPAVR 94 (190)
T ss_pred CCCCC
Confidence 66655
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00031 Score=67.67 Aligned_cols=259 Identities=14% Similarity=0.064 Sum_probs=138.5
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCc-eeecccCCCccccccccceEEecCCcEEEEEecCCCC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-AKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~-~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~ 110 (706)
.....+||+-|.+||.... + ..|.++|..|-. .+-++.+-.. +.++.||+||+.|+..+.+
T Consensus 25 ~a~~~~Fs~~G~~lAvGc~--------n--G~vvI~D~~T~~iar~lsaH~~p-----i~sl~WS~dgr~LltsS~D--- 86 (405)
T KOG1273|consen 25 LAECCQFSRWGDYLAVGCA--------N--GRVVIYDFDTFRIARMLSAHVRP-----ITSLCWSRDGRKLLTSSRD--- 86 (405)
T ss_pred ccceEEeccCcceeeeecc--------C--CcEEEEEccccchhhhhhccccc-----eeEEEecCCCCEeeeecCC---
Confidence 3667899999999999764 3 466667776643 3444433332 7799999999988865421
Q ss_pred CCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CC-CceecCCCceEeeeeeCCCCcE
Q 005240 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTPAVYTAVEPSPDQKY 188 (706)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g-~~~~lt~~~~~~~~~~SpDG~~ 188 (706)
..+-++|+ +| -.+++-....+....|.|-.+.
T Consensus 87 ----------------------------------------------~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n 120 (405)
T KOG1273|consen 87 ----------------------------------------------WSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRN 120 (405)
T ss_pred ----------------------------------------------ceeEEEeccCCCceeEEEccCccceeeeccccCC
Confidence 46777788 77 4455555556677788885544
Q ss_pred EEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCC
Q 005240 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDA 268 (706)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~ 268 (706)
.++...-. ..-.+.++...+.+.|...+..+.... ...-.|.+.|+. |+.- .
T Consensus 121 ~~va~~~~------------~sp~vi~~s~~~h~~Lp~d~d~dln~s--------as~~~fdr~g~y-IitG-t------ 172 (405)
T KOG1273|consen 121 KCVATIME------------ESPVVIDFSDPKHSVLPKDDDGDLNSS--------ASHGVFDRRGKY-IITG-T------ 172 (405)
T ss_pred eEEEEEec------------CCcEEEEecCCceeeccCCCccccccc--------cccccccCCCCE-EEEe-c------
Confidence 43333221 123455555454555544432221110 001135566665 3311 1
Q ss_pred ccccCccceeeeecCCCCCCCCceE---EeecccccccceecCCCceEEEEeeccccceEEEEEc-CC--CCCCCceeee
Q 005240 269 NVEVSPRDIIYTQPAEPAEGEKPEI---LHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVC-PG--SKDVAPRVLF 342 (706)
Q Consensus 269 ~~~~~~~~~l~~~d~~~~~~~~~~~---l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d-~~--~~~~~~~~l~ 342 (706)
.++.+.++++ ++-+... ++. ...+-++.++-.|+.|++... ++..+.|.+. +. +..+++....
T Consensus 173 -----sKGkllv~~a---~t~e~vas~rits-~~~IK~I~~s~~g~~liiNts--DRvIR~ye~~di~~~~r~~e~e~~~ 241 (405)
T KOG1273|consen 173 -----SKGKLLVYDA---ETLECVASFRITS-VQAIKQIIVSRKGRFLIINTS--DRVIRTYEISDIDDEGRDGEVEPEH 241 (405)
T ss_pred -----CcceEEEEec---chheeeeeeeech-heeeeEEEEeccCcEEEEecC--CceEEEEehhhhcccCccCCcChhH
Confidence 1123555666 3322211 111 245667788889998887543 2334444332 22 2223333221
Q ss_pred cCcccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeeecccc
Q 005240 343 DRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNR 415 (706)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~ 415 (706)
.++++.+.-.=...-+|.||.|+..... ....||......|+..++..+..
T Consensus 242 --K~qDvVNk~~Wk~ccfs~dgeYv~a~s~--------------------~aHaLYIWE~~~GsLVKILhG~k 292 (405)
T KOG1273|consen 242 --KLQDVVNKLQWKKCCFSGDGEYVCAGSA--------------------RAHALYIWEKSIGSLVKILHGTK 292 (405)
T ss_pred --HHHHHHhhhhhhheeecCCccEEEeccc--------------------cceeEEEEecCCcceeeeecCCc
Confidence 1111110000001336889988877642 23357778888888888876654
|
|
| >PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.2e-05 Score=86.38 Aligned_cols=124 Identities=13% Similarity=0.088 Sum_probs=76.5
Q ss_pred EEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHH---HCCeEEEEcC
Q 005240 486 KYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFL---ARRFAVLAGP 562 (706)
Q Consensus 486 ~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~G~~v~~~~ 562 (706)
.|.+..+..++.....|++. +. -|.||++||.+.. ...| .......|+ +.+|.|+.++
T Consensus 179 ~~~~~~~~~l~~~~~gp~~~-~~----k~~VVLlHG~~~s-----------~~~W---~~~~~~~L~~~~~~~yrVia~D 239 (481)
T PLN03087 179 SWLSSSNESLFVHVQQPKDN-KA----KEDVLFIHGFISS-----------SAFW---TETLFPNFSDAAKSTYRLFAVD 239 (481)
T ss_pred eeEeeCCeEEEEEEecCCCC-CC----CCeEEEECCCCcc-----------HHHH---HHHHHHHHHHHhhCCCEEEEEC
Confidence 34444567888888888752 11 2568889996421 0011 001112233 4799999966
Q ss_pred CCCcCCCCCCCCc--h-hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCC
Q 005240 563 SIPIIGEGDKLPN--D-RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 636 (706)
Q Consensus 563 ~~~~~g~g~~~~~--~-~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~ 636 (706)
.+ |+|.+... . ...+...+|+.. .+.+. .+..++.++||||||++++.++.++|+++++++..++.
T Consensus 240 l~---G~G~S~~p~~~~ytl~~~a~~l~~---~ll~~--lg~~k~~LVGhSmGG~iAl~~A~~~Pe~V~~LVLi~~~ 308 (481)
T PLN03087 240 LL---GFGRSPKPADSLYTLREHLEMIER---SVLER--YKVKSFHIVAHSLGCILALALAVKHPGAVKSLTLLAPP 308 (481)
T ss_pred CC---CCCCCcCCCCCcCCHHHHHHHHHH---HHHHH--cCCCCEEEEEECHHHHHHHHHHHhChHhccEEEEECCC
Confidence 65 55555332 1 123334444421 22222 23468999999999999999999999999999998864
|
|
| >PLN02965 Probable pheophorbidase | Back alignment and domain information |
|---|
Probab=98.24 E-value=8.2e-06 Score=81.60 Aligned_cols=82 Identities=16% Similarity=0.134 Sum_probs=59.2
Q ss_pred HHHHHHHCCeEEEEcCCCCcCCCCCCCCc---hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhC
Q 005240 547 SSLIFLARRFAVLAGPSIPIIGEGDKLPN---DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHA 623 (706)
Q Consensus 547 ~~~~l~~~G~~v~~~~~~~~~g~g~~~~~---~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~ 623 (706)
....|++.||.|++++.+ |+|.+... ....+...+|+.+.++.+ + + ..++.+.||||||.+++.++.++
T Consensus 22 ~~~~L~~~~~~via~Dl~---G~G~S~~~~~~~~~~~~~a~dl~~~l~~l---~-~-~~~~~lvGhSmGG~ia~~~a~~~ 93 (255)
T PLN02965 22 LATLLDAAGFKSTCVDLT---GAGISLTDSNTVSSSDQYNRPLFALLSDL---P-P-DHKVILVGHSIGGGSVTEALCKF 93 (255)
T ss_pred HHHHHhhCCceEEEecCC---cCCCCCCCccccCCHHHHHHHHHHHHHhc---C-C-CCCEEEEecCcchHHHHHHHHhC
Confidence 345567889999996554 55555322 122556677777776654 1 1 15899999999999999999999
Q ss_pred CCceeEEEeccCC
Q 005240 624 PHLFCCGIARSGS 636 (706)
Q Consensus 624 p~~~~a~v~~~~~ 636 (706)
|++++.+|..++.
T Consensus 94 p~~v~~lvl~~~~ 106 (255)
T PLN02965 94 TDKISMAIYVAAA 106 (255)
T ss_pred chheeEEEEEccc
Confidence 9999988887653
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00023 Score=70.47 Aligned_cols=164 Identities=18% Similarity=0.193 Sum_probs=94.5
Q ss_pred CCeeeeecCCCC--CcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEec
Q 005240 19 GPEKEVHGYPDG--AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVN 96 (706)
Q Consensus 19 g~~~~i~~~~~~--~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSp 96 (706)
+..+++.+.... .....+++||||+.+||+.. .++...||+....+.....++ .. .+..+.|++
T Consensus 10 ~~~~pv~g~~~~~~~~~~s~AvS~dg~~~A~v~~-------~~~~~~L~~~~~~~~~~~~~~-g~------~l~~PS~d~ 75 (253)
T PF10647_consen 10 GGVTPVPGALGEGGYDVTSPAVSPDGSRVAAVSE-------GDGGRSLYVGPAGGPVRPVLT-GG------SLTRPSWDP 75 (253)
T ss_pred CceeECCCCcCcCCccccceEECCCCCeEEEEEE-------cCCCCEEEEEcCCCcceeecc-CC------ccccccccC
Confidence 666777654332 26889999999999999872 156789999976544433332 22 277899999
Q ss_pred CCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCC--CceecCCC
Q 005240 97 NSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG--TAKDFGTP 174 (706)
Q Consensus 97 Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g--~~~~lt~~ 174 (706)
+|...++.. . .. ...+++...+| ....+...
T Consensus 76 ~g~~W~v~~-~-~~---------------------------------------------~~~~~~~~~~g~~~~~~v~~~ 108 (253)
T PF10647_consen 76 DGWVWTVDD-G-SG---------------------------------------------GVRVVRDSASGTGEPVEVDWP 108 (253)
T ss_pred CCCEEEEEc-C-CC---------------------------------------------ceEEEEecCCCcceeEEeccc
Confidence 987544432 1 00 02222222334 33333322
Q ss_pred --c-eEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecC---CCeeEEcccCCCCCCCCcccCccCCCCccee
Q 005240 175 --A-VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD---GKLVRELCDLPPAEDIPVCYNSVREGMRSIS 248 (706)
Q Consensus 175 --~-~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~ 248 (706)
. .+..+.+||||.+|++...... ..+|++.-+. .+..+.|.....- ..+ .......+.
T Consensus 109 ~~~~~I~~l~vSpDG~RvA~v~~~~~----------~~~v~va~V~r~~~g~~~~l~~~~~~-~~~-----~~~~v~~v~ 172 (253)
T PF10647_consen 109 GLRGRITALRVSPDGTRVAVVVEDGG----------GGRVYVAGVVRDGDGVPRRLTGPRRV-APP-----LLSDVTDVA 172 (253)
T ss_pred ccCCceEEEEECCCCcEEEEEEecCC----------CCeEEEEEEEeCCCCCcceeccceEe-ccc-----ccCcceeee
Confidence 2 6889999999999999886543 2466665443 2212222221100 000 001234789
Q ss_pred eecCCCceEEEEE
Q 005240 249 WRADKPSTLYWVE 261 (706)
Q Consensus 249 ~spdg~~~l~~~~ 261 (706)
|++++. |+++.
T Consensus 173 W~~~~~--L~V~~ 183 (253)
T PF10647_consen 173 WSDDST--LVVLG 183 (253)
T ss_pred ecCCCE--EEEEe
Confidence 999987 55553
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes | Back alignment and domain information |
|---|
Probab=98.23 E-value=6.6e-06 Score=82.59 Aligned_cols=87 Identities=9% Similarity=-0.062 Sum_probs=61.9
Q ss_pred HHHHH-HCCeEEEEcCCCCcCCCCCCCCc--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCC
Q 005240 548 SLIFL-ARRFAVLAGPSIPIIGEGDKLPN--DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAP 624 (706)
Q Consensus 548 ~~~l~-~~G~~v~~~~~~~~~g~g~~~~~--~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p 624 (706)
...+. ..+|.|+..+..+. +..... ........+++...+++|.++..++.++|.++|||+||+++..++.+.|
T Consensus 58 ~~~ll~~~~~nVi~vD~~~~---~~~~y~~a~~~~~~v~~~la~~l~~L~~~~g~~~~~i~lIGhSlGa~vAg~~a~~~~ 134 (275)
T cd00707 58 RKAYLSRGDYNVIVVDWGRG---ANPNYPQAVNNTRVVGAELAKFLDFLVDNTGLSLENVHLIGHSLGAHVAGFAGKRLN 134 (275)
T ss_pred HHHHHhcCCCEEEEEECccc---cccChHHHHHhHHHHHHHHHHHHHHHHHhcCCChHHEEEEEecHHHHHHHHHHHHhc
Confidence 33344 46799988666432 111111 1122334567888888888764467789999999999999999999999
Q ss_pred CceeEEEeccCCC
Q 005240 625 HLFCCGIARSGSY 637 (706)
Q Consensus 625 ~~~~a~v~~~~~~ 637 (706)
++++.+++..|..
T Consensus 135 ~~v~~iv~LDPa~ 147 (275)
T cd00707 135 GKLGRITGLDPAG 147 (275)
T ss_pred CccceeEEecCCc
Confidence 9999999987753
|
Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site. |
| >PLN02211 methyl indole-3-acetate methyltransferase | Back alignment and domain information |
|---|
Probab=98.23 E-value=6.9e-06 Score=82.83 Aligned_cols=101 Identities=10% Similarity=0.082 Sum_probs=65.4
Q ss_pred ceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCCCCc---hhhHHHHHHHHHHH
Q 005240 513 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPN---DRFVEQLVSSAEAA 589 (706)
Q Consensus 513 ~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~---~~~~~~~~~D~~~~ 589 (706)
.|.||++||.... . ..| ......|.+.||.|+.++-+ |+|.+... ....+...+++.+.
T Consensus 18 ~p~vvliHG~~~~----------~-~~w----~~~~~~L~~~g~~vi~~dl~---g~G~s~~~~~~~~~~~~~~~~l~~~ 79 (273)
T PLN02211 18 PPHFVLIHGISGG----------S-WCW----YKIRCLMENSGYKVTCIDLK---SAGIDQSDADSVTTFDEYNKPLIDF 79 (273)
T ss_pred CCeEEEECCCCCC----------c-CcH----HHHHHHHHhCCCEEEEeccc---CCCCCCCCcccCCCHHHHHHHHHHH
Confidence 3789999995321 1 111 13345677789999985554 44543221 12334444444443
Q ss_pred HHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCC
Q 005240 590 VEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 636 (706)
Q Consensus 590 ~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~ 636 (706)
++ +.. ...++.+.||||||.++..++.++|++++++|..++.
T Consensus 80 i~---~l~--~~~~v~lvGhS~GG~v~~~~a~~~p~~v~~lv~~~~~ 121 (273)
T PLN02211 80 LS---SLP--ENEKVILVGHSAGGLSVTQAIHRFPKKICLAVYVAAT 121 (273)
T ss_pred HH---hcC--CCCCEEEEEECchHHHHHHHHHhChhheeEEEEeccc
Confidence 33 322 2368999999999999999999999999999988663
|
|
| >PLN02894 hydrolase, alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.7e-05 Score=84.63 Aligned_cols=102 Identities=20% Similarity=0.153 Sum_probs=61.6
Q ss_pred ceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCCCCch---hhHHHHHHHHHHH
Q 005240 513 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPND---RFVEQLVSSAEAA 589 (706)
Q Consensus 513 ~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~---~~~~~~~~D~~~~ 589 (706)
.|.||++||.+.. ...+ ......|+ .+|.|+..+.+ |+|.+.... .......+.+...
T Consensus 105 ~p~vvllHG~~~~-----------~~~~----~~~~~~L~-~~~~vi~~D~r---G~G~S~~~~~~~~~~~~~~~~~~~~ 165 (402)
T PLN02894 105 APTLVMVHGYGAS-----------QGFF----FRNFDALA-SRFRVIAIDQL---GWGGSSRPDFTCKSTEETEAWFIDS 165 (402)
T ss_pred CCEEEEECCCCcc-----------hhHH----HHHHHHHH-hCCEEEEECCC---CCCCCCCCCcccccHHHHHHHHHHH
Confidence 4789999996421 0001 12233444 46999986665 455443221 0111111122222
Q ss_pred -HHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCC
Q 005240 590 -VEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 636 (706)
Q Consensus 590 -~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~ 636 (706)
.+|+.+. +..++.++||||||++++.++.++|++++++|..+|.
T Consensus 166 i~~~~~~l---~~~~~~lvGhS~GG~la~~~a~~~p~~v~~lvl~~p~ 210 (402)
T PLN02894 166 FEEWRKAK---NLSNFILLGHSFGGYVAAKYALKHPEHVQHLILVGPA 210 (402)
T ss_pred HHHHHHHc---CCCCeEEEEECHHHHHHHHHHHhCchhhcEEEEECCc
Confidence 2333332 4468999999999999999999999999998888754
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.23 E-value=7e-05 Score=72.04 Aligned_cols=167 Identities=14% Similarity=0.222 Sum_probs=89.4
Q ss_pred ceEEEEccCCC-ceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecC---CC---eeEEcccCC
Q 005240 157 AQLVLGSLDGT-AKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD---GK---LVRELCDLP 228 (706)
Q Consensus 157 ~~l~~~~l~g~-~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~---~~~~l~~~~ 228 (706)
+.|.++++.|+ ...+... ......+.||||+.|+..... .++.+|.+- .+ ++.++....
T Consensus 209 t~i~lw~lkGq~L~~idtnq~~n~~aavSP~GRFia~~gFT-------------pDVkVwE~~f~kdG~fqev~rvf~Lk 275 (420)
T KOG2096|consen 209 TKICLWDLKGQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFT-------------PDVKVWEPIFTKDGTFQEVKRVFSLK 275 (420)
T ss_pred CcEEEEecCCceeeeeccccccccceeeCCCCcEEEEecCC-------------CCceEEEEEeccCcchhhhhhhheec
Confidence 57888888883 4444433 445577899999999876554 367777653 12 233333333
Q ss_pred CCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEE-------eeccccc
Q 005240 229 PAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEIL-------HKLDLRF 301 (706)
Q Consensus 229 ~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l-------~~~~~~~ 301 (706)
+.. .++..++|||+..+ ++-++ .++ . ..+|+.+.=|-.+ ..+..| .......
T Consensus 276 GH~----------saV~~~aFsn~S~r-~vtvS-kDG-~--wriwdtdVrY~~~------qDpk~Lk~g~~pl~aag~~p 334 (420)
T KOG2096|consen 276 GHQ----------SAVLAAAFSNSSTR-AVTVS-KDG-K--WRIWDTDVRYEAG------QDPKILKEGSAPLHAAGSEP 334 (420)
T ss_pred cch----------hheeeeeeCCCcce-eEEEe-cCC-c--EEEeeccceEecC------CCchHhhcCCcchhhcCCCc
Confidence 321 22446788888877 54332 221 1 1222222222221 222222 2222333
Q ss_pred ccceecCCCceEEEEeeccccceEEEEEcCCCCCCCcee--eecCcccccccCCCCCceEeccCCCEEEEee
Q 005240 302 RSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRV--LFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 302 ~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~--l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 371 (706)
-.+..||.|+.|+... ...|-.++..+++..+.. +.... ...++|++||++++..-
T Consensus 335 ~RL~lsP~g~~lA~s~-----gs~l~~~~se~g~~~~~~e~~h~~~---------Is~is~~~~g~~~atcG 392 (420)
T KOG2096|consen 335 VRLELSPSGDSLAVSF-----GSDLKVFASEDGKDYPELEDIHSTT---------ISSISYSSDGKYIATCG 392 (420)
T ss_pred eEEEeCCCCcEEEeec-----CCceEEEEcccCccchhHHHhhcCc---------eeeEEecCCCcEEeeec
Confidence 3667899999888753 224666666664321111 11111 23488999999987763
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.23 E-value=9.4e-05 Score=73.46 Aligned_cols=177 Identities=15% Similarity=0.104 Sum_probs=103.0
Q ss_pred eeEEEEEcCCCceeecccCCCcc-ccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchh
Q 005240 62 LRVWIADAETGEAKPLFESPDIC-LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDN 140 (706)
Q Consensus 62 ~~l~~~d~~~g~~~~lt~~~~~~-~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (706)
..+.++|+++++.+.+....... -...+.+.+..|||+ |+++........
T Consensus 60 ~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~---------------------------- 110 (246)
T PF08450_consen 60 GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGAS---------------------------- 110 (246)
T ss_dssp TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTT----------------------------
T ss_pred CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCccc----------------------------
Confidence 34455599999888776542111 112255789999999 677643211110
Q ss_pred ccCCchhhhhhhhcccceEEEEccCCCceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecC--
Q 005240 141 LLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD-- 217 (706)
Q Consensus 141 ~~~~~~d~~~~~~~~~~~l~~~~l~g~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~-- 217 (706)
....+.||+++.+++.+.+... .....++|||||+.|+++.... ..|+.++++
T Consensus 111 ------------~~~~g~v~~~~~~~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~------------~~i~~~~~~~~ 166 (246)
T PF08450_consen 111 ------------GIDPGSVYRIDPDGKVTVVADGLGFPNGIAFSPDGKTLYVADSFN------------GRIWRFDLDAD 166 (246)
T ss_dssp ------------CGGSEEEEEEETTSEEEEEEEEESSEEEEEEETTSSEEEEEETTT------------TEEEEEEEETT
T ss_pred ------------cccccceEEECCCCeEEEEecCcccccceEECCcchheeeccccc------------ceeEEEecccc
Confidence 0011689999998876666555 5677999999999998876543 478998886
Q ss_pred CCe---eEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEE
Q 005240 218 GKL---VRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEIL 294 (706)
Q Consensus 218 ~~~---~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l 294 (706)
+.. .+.+........ .+..++...+|+ ||... . ..+.|++++. ++.....+
T Consensus 167 ~~~~~~~~~~~~~~~~~g----------~pDG~~vD~~G~--l~va~-~----------~~~~I~~~~p---~G~~~~~i 220 (246)
T PF08450_consen 167 GGELSNRRVFIDFPGGPG----------YPDGLAVDSDGN--LWVAD-W----------GGGRIVVFDP---DGKLLREI 220 (246)
T ss_dssp TCCEEEEEEEEE-SSSSC----------EEEEEEEBTTS---EEEEE-E----------TTTEEEEEET---TSCEEEEE
T ss_pred ccceeeeeeEEEcCCCCc----------CCCcceEcCCCC--EEEEE-c----------CCCEEEEECC---CccEEEEE
Confidence 331 223322222110 123577888886 55432 2 1235788887 53333344
Q ss_pred eeccccccccee-cCCCceEEEEe
Q 005240 295 HKLDLRFRSVSW-CDDSLALVNET 317 (706)
Q Consensus 295 ~~~~~~~~~~~w-spDg~~l~~~~ 317 (706)
.-.......++| -+|.+.|+.++
T Consensus 221 ~~p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 221 ELPVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp E-SSSSEEEEEEESTTSSEEEEEE
T ss_pred cCCCCCEEEEEEECCCCCEEEEEe
Confidence 433357788888 46777777764
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00017 Score=78.92 Aligned_cols=137 Identities=17% Similarity=0.272 Sum_probs=82.4
Q ss_pred ceEEEEcc-CC-CceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeE-EcccCCC-CC
Q 005240 157 AQLVLGSL-DG-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR-ELCDLPP-AE 231 (706)
Q Consensus 157 ~~l~~~~l-~g-~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~-~~ 231 (706)
..|.++++ ++ +.+.+-.. +.+..+.++|.|+.||.++.++ .+.+|+++.+... .|+...- .+
T Consensus 118 ~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG-------------~v~iw~~~~~~~~~tl~~v~k~n~ 184 (933)
T KOG1274|consen 118 TAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDG-------------KVQIWDLQDGILSKTLTGVDKDNE 184 (933)
T ss_pred eeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCc-------------eEEEEEcccchhhhhcccCCcccc
Confidence 46777777 55 33333333 7889999999999999888764 7999999865433 2322211 01
Q ss_pred CCCcccCccCCC-CcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCce-EEe-ec-ccccccceec
Q 005240 232 DIPVCYNSVREG-MRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPE-ILH-KL-DLRFRSVSWC 307 (706)
Q Consensus 232 ~~p~~~~~~~~g-~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~-~l~-~~-~~~~~~~~ws 307 (706)
..- .. ...++|+|+|.+ +++... ++.|.+++. .+.+.. .|. .. ...+...+||
T Consensus 185 ~~~-------s~i~~~~aW~Pk~g~-la~~~~------------d~~Vkvy~r---~~we~~f~Lr~~~~ss~~~~~~ws 241 (933)
T KOG1274|consen 185 FIL-------SRICTRLAWHPKGGT-LAVPPV------------DNTVKVYSR---KGWELQFKLRDKLSSSKFSDLQWS 241 (933)
T ss_pred ccc-------cceeeeeeecCCCCe-EEeecc------------CCeEEEEcc---CCceeheeecccccccceEEEEEc
Confidence 000 01 126799999887 554421 123555555 444332 222 22 2337889999
Q ss_pred CCCceEEEEeeccccceEEEEEcCCC
Q 005240 308 DDSLALVNETWYKTSQTRTWLVCPGS 333 (706)
Q Consensus 308 pDg~~l~~~~~~~~~~~~l~~~d~~~ 333 (706)
|+|++|+.... .+.|-++|.++
T Consensus 242 PnG~YiAAs~~----~g~I~vWnv~t 263 (933)
T KOG1274|consen 242 PNGKYIAASTL----DGQILVWNVDT 263 (933)
T ss_pred CCCcEEeeecc----CCcEEEEeccc
Confidence 99999997642 23456666664
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00037 Score=65.68 Aligned_cols=215 Identities=11% Similarity=0.032 Sum_probs=115.8
Q ss_pred ceEEEEcc-CC-CceecCCCceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCC-------Ce-eEEccc
Q 005240 157 AQLVLGSL-DG-TAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG-------KL-VRELCD 226 (706)
Q Consensus 157 ~~l~~~~l-~g-~~~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-------~~-~~~l~~ 226 (706)
..+.+||+ +| +...+..+..+..+.||++|..+++.....- .++..|.++++.. .+ ..++..
T Consensus 74 ~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~m--------g~~~~v~~fdi~~~~~~~~s~ep~~kI~t 145 (327)
T KOG0643|consen 74 QTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQM--------GYTCFVSVFDIRDDSSDIDSEEPYLKIPT 145 (327)
T ss_pred ceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhc--------CcceEEEEEEccCChhhhcccCceEEecC
Confidence 34556687 67 4445555567889999999999998876531 2246777777752 22 222222
Q ss_pred CCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCc-eEE-eecccccccc
Q 005240 227 LPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP-EIL-HKLDLRFRSV 304 (706)
Q Consensus 227 ~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~-~~l-~~~~~~~~~~ 304 (706)
.+ .-+....|+|-++. |+.- . ..+.|-++|+ .+|+. ..- ..+...+.++
T Consensus 146 ~~-------------skit~a~Wg~l~~~-ii~G--h----------e~G~is~~da---~~g~~~v~s~~~h~~~Ind~ 196 (327)
T KOG0643|consen 146 PD-------------SKITSALWGPLGET-IIAG--H----------EDGSISIYDA---RTGKELVDSDEEHSSKINDL 196 (327)
T ss_pred Cc-------------cceeeeeecccCCE-EEEe--c----------CCCcEEEEEc---ccCceeeechhhhccccccc
Confidence 21 11225579999987 4422 1 1123667777 44432 221 2345688999
Q ss_pred eecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEe
Q 005240 305 SWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLN 384 (706)
Q Consensus 305 ~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~ 384 (706)
.+|+|..+++..+ .+....| +|..+-+...+-.++.+++... .+|--.+++..- +..-.
T Consensus 197 q~s~d~T~FiT~s--~Dttakl--~D~~tl~v~Kty~te~PvN~aa---------isP~~d~VilgG-----GqeA~--- 255 (327)
T KOG0643|consen 197 QFSRDRTYFITGS--KDTTAKL--VDVRTLEVLKTYTTERPVNTAA---------ISPLLDHVILGG-----GQEAM--- 255 (327)
T ss_pred cccCCcceEEecc--cCcccee--eeccceeeEEEeeeccccccee---------cccccceEEecC-----Cceee---
Confidence 9999999888765 2234444 4444422222333666665543 355555554431 11110
Q ss_pred cCCCCCCCCCCceeeeecCCCceee-eecccchhhhhhhhhhccCCCceecccCCCE
Q 005240 385 GRGFTPEGNIPFLDLFDINTGSKER-IWESNREKYFETAVALVFGQGEEDINLNQLK 440 (706)
Q Consensus 385 ~~g~~~~~~~~~l~~~d~~~g~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~ 440 (706)
-+..-+...|+.+. ....--...+..+..+....+.++|+|||+.
T Consensus 256 -----------dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGks 301 (327)
T KOG0643|consen 256 -----------DVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKS 301 (327)
T ss_pred -----------eeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcc
Confidence 01111122233221 1111111134456777777888999999973
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.20 E-value=9.4e-05 Score=80.85 Aligned_cols=203 Identities=13% Similarity=0.151 Sum_probs=123.3
Q ss_pred cceeEeecCCCCCCCCeee-eecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCc
Q 005240 5 TGIGIHRLLPDDSLGPEKE-VHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~-i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~ 83 (706)
..|.++.... +.+.. |+-++. .....+++-||+++|+.+. ...|-+++++.+.....+.+...
T Consensus 76 ~tv~~y~fps----~~~~~iL~Rftl--p~r~~~v~g~g~~iaagsd----------D~~vK~~~~~D~s~~~~lrgh~a 139 (933)
T KOG1274|consen 76 NTVLRYKFPS----GEEDTILARFTL--PIRDLAVSGSGKMIAAGSD----------DTAVKLLNLDDSSQEKVLRGHDA 139 (933)
T ss_pred ceEEEeeCCC----CCccceeeeeec--cceEEEEecCCcEEEeecC----------ceeEEEEeccccchheeecccCC
Confidence 4566666655 44442 221111 3668899999999999753 36777888776655555443322
Q ss_pred cccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEc
Q 005240 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (706)
Q Consensus 84 ~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~ 163 (706)
.+..+.++|.|+.||..+- .+.|+.++
T Consensus 140 ----pVl~l~~~p~~~fLAvss~-------------------------------------------------dG~v~iw~ 166 (933)
T KOG1274|consen 140 ----PVLQLSYDPKGNFLAVSSC-------------------------------------------------DGKVQIWD 166 (933)
T ss_pred ----ceeeeeEcCCCCEEEEEec-------------------------------------------------CceEEEEE
Confidence 3778999999999998742 26777778
Q ss_pred c-CCC-ceecCCC---------ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCC
Q 005240 164 L-DGT-AKDFGTP---------AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAED 232 (706)
Q Consensus 164 l-~g~-~~~lt~~---------~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~ 232 (706)
+ ++. ...|+.- .....++|+|+|..+++...+ ..|.+|+.++-...-........
T Consensus 167 ~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d-------------~~Vkvy~r~~we~~f~Lr~~~~s- 232 (933)
T KOG1274|consen 167 LQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVD-------------NTVKVYSRKGWELQFKLRDKLSS- 232 (933)
T ss_pred cccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccC-------------CeEEEEccCCceeheeecccccc-
Confidence 7 552 2222211 235689999998888776654 36778888765432211111110
Q ss_pred CCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCce
Q 005240 233 IPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLA 312 (706)
Q Consensus 233 ~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~ 312 (706)
.....++|||.|++ |+-. ...+.|.+||. ++ ..+ ......+.-.+|-|+...
T Consensus 233 ---------s~~~~~~wsPnG~Y-iAAs------------~~~g~I~vWnv---~t--~~~-~~~~~~Vc~~aw~p~~n~ 284 (933)
T KOG1274|consen 233 ---------SKFSDLQWSPNGKY-IAAS------------TLDGQILVWNV---DT--HER-HEFKRAVCCEAWKPNANA 284 (933)
T ss_pred ---------cceEEEEEcCCCcE-Eeee------------ccCCcEEEEec---cc--chh-ccccceeEEEecCCCCCe
Confidence 11236799999987 5521 12235778888 33 111 223455667789898777
Q ss_pred EEEEee
Q 005240 313 LVNETW 318 (706)
Q Consensus 313 l~~~~~ 318 (706)
|-+..+
T Consensus 285 it~~~~ 290 (933)
T KOG1274|consen 285 ITLITA 290 (933)
T ss_pred eEEEee
Confidence 666543
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.20 E-value=3.9e-05 Score=80.05 Aligned_cols=164 Identities=16% Similarity=0.247 Sum_probs=97.5
Q ss_pred eeEeecCCCCCCCCeeeeecCCCCCcccceeeCC-CCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccc
Q 005240 7 IGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSP-DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (706)
Q Consensus 7 ~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SP-DG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 85 (706)
|-|++|..+|+.-. ..+.++.-+..+...+|.| |-.+||.... ++..+||.+...+......| ++.-+
T Consensus 605 iai~el~~PGrLPD-gv~p~l~Ngt~vtDl~WdPFD~~rLAVa~d--------dg~i~lWr~~a~gl~e~~~t--Pe~~l 673 (1012)
T KOG1445|consen 605 IAIYELNEPGRLPD-GVMPGLFNGTLVTDLHWDPFDDERLAVATD--------DGQINLWRLTANGLPENEMT--PEKIL 673 (1012)
T ss_pred EEEEEcCCCCCCCc-ccccccccCceeeecccCCCChHHeeeccc--------CceEEEEEeccCCCCcccCC--cceee
Confidence 55667766433221 1233344555788999999 9999998764 78899999987765432222 11100
Q ss_pred cc---cccceEEecCC-cEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEE
Q 005240 86 NA---VFGSFVWVNNS-TLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (706)
Q Consensus 86 ~~---~~~~~~wSpDg-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~ 161 (706)
.. -+-++.|.|=. ..|+..+ -...|-+
T Consensus 674 t~h~eKI~slRfHPLAadvLa~as-------------------------------------------------yd~Ti~l 704 (1012)
T KOG1445|consen 674 TIHGEKITSLRFHPLAADVLAVAS-------------------------------------------------YDSTIEL 704 (1012)
T ss_pred ecccceEEEEEecchhhhHhhhhh-------------------------------------------------ccceeee
Confidence 00 02344454422 1222211 1146777
Q ss_pred Ecc-CC-CceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccC
Q 005240 162 GSL-DG-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYN 238 (706)
Q Consensus 162 ~~l-~g-~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~ 238 (706)
+|+ ++ .--+|... +.+-.++|||||++|+-+..++ .|++|+...++ +.+..+.+.
T Consensus 705 WDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg-------------~~rVy~Prs~e-~pv~Eg~gp-------- 762 (1012)
T KOG1445|consen 705 WDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDG-------------TLRVYEPRSRE-QPVYEGKGP-------- 762 (1012)
T ss_pred eehhhhhhhheeccCcCceeEEEECCCCcceeeeecCc-------------eEEEeCCCCCC-CccccCCCC--------
Confidence 788 55 33345545 7889999999999999776553 78888887553 333333332
Q ss_pred ccCCCC--cceeeecCCCc
Q 005240 239 SVREGM--RSISWRADKPS 255 (706)
Q Consensus 239 ~~~~g~--~~~~~spdg~~ 255 (706)
.|. ..+.|.-||+.
T Consensus 763 ---vgtRgARi~wacdgr~ 778 (1012)
T KOG1445|consen 763 ---VGTRGARILWACDGRI 778 (1012)
T ss_pred ---ccCcceeEEEEecCcE
Confidence 122 26889999986
|
|
| >PRK10349 carboxylesterase BioH; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=4.1e-05 Score=76.61 Aligned_cols=70 Identities=14% Similarity=0.197 Sum_probs=47.2
Q ss_pred HCCeEEEEcCCCCcCCCCCCCCchh-hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEE
Q 005240 553 ARRFAVLAGPSIPIIGEGDKLPNDR-FVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGI 631 (706)
Q Consensus 553 ~~G~~v~~~~~~~~~g~g~~~~~~~-~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v 631 (706)
+..|.|+.++.+ |+|.+..... ...+. ++.+.+. ..+++.++||||||++++.++.++|+++++++
T Consensus 37 ~~~~~vi~~Dl~---G~G~S~~~~~~~~~~~-------~~~l~~~---~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~li 103 (256)
T PRK10349 37 SSHFTLHLVDLP---GFGRSRGFGALSLADM-------AEAVLQQ---APDKAIWLGWSLGGLVASQIALTHPERVQALV 103 (256)
T ss_pred hcCCEEEEecCC---CCCCCCCCCCCCHHHH-------HHHHHhc---CCCCeEEEEECHHHHHHHHHHHhChHhhheEE
Confidence 356988885554 4554432211 12222 2233332 24789999999999999999999999999998
Q ss_pred eccC
Q 005240 632 ARSG 635 (706)
Q Consensus 632 ~~~~ 635 (706)
..++
T Consensus 104 li~~ 107 (256)
T PRK10349 104 TVAS 107 (256)
T ss_pred EecC
Confidence 8765
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.18 E-value=3.2e-05 Score=78.58 Aligned_cols=222 Identities=12% Similarity=0.107 Sum_probs=139.8
Q ss_pred ceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccc
Q 005240 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (706)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 85 (706)
-|+|+|+..++..-...++-=+..++.+..-+.+|||+.|... .....|-++|+..-..+--........
T Consensus 441 cVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivG----------GeastlsiWDLAapTprikaeltssap 510 (705)
T KOG0639|consen 441 CVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVG----------GEASTLSIWDLAAPTPRIKAELTSSAP 510 (705)
T ss_pred eEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEec----------cccceeeeeeccCCCcchhhhcCCcch
Confidence 5899999997666666666545566688889999999999763 335677777877654432211121100
Q ss_pred cccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccC
Q 005240 86 NAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD 165 (706)
Q Consensus 86 ~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~ 165 (706)
.--.++.|||.+. .|..- ..+.|-++||.
T Consensus 511 --aCyALa~spDakv-cFscc------------------------------------------------sdGnI~vwDLh 539 (705)
T KOG0639|consen 511 --ACYALAISPDAKV-CFSCC------------------------------------------------SDGNIAVWDLH 539 (705)
T ss_pred --hhhhhhcCCccce-eeeec------------------------------------------------cCCcEEEEEcc
Confidence 1235678999985 44421 11678888994
Q ss_pred C--CceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCC
Q 005240 166 G--TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVRE 242 (706)
Q Consensus 166 g--~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~ 242 (706)
. .++++... ....++.+|+||.+|+-..- .+.+.-||+..+ +++...+...
T Consensus 540 nq~~VrqfqGhtDGascIdis~dGtklWTGGl-------------DntvRcWDlreg--rqlqqhdF~S----------- 593 (705)
T KOG0639|consen 540 NQTLVRQFQGHTDGASCIDISKDGTKLWTGGL-------------DNTVRCWDLREG--RQLQQHDFSS----------- 593 (705)
T ss_pred cceeeecccCCCCCceeEEecCCCceeecCCC-------------ccceeehhhhhh--hhhhhhhhhh-----------
Confidence 4 45555544 67889999999999974322 247888998643 3444444331
Q ss_pred CCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeecccc
Q 005240 243 GMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTS 322 (706)
Q Consensus 243 g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~ 322 (706)
.+..+.++|.+.+ |++-- . +..+.+... .+.+.-+|.-...-+-++.|++-|++++.+. .+.
T Consensus 594 QIfSLg~cP~~dW-lavGM--e----------ns~vevlh~---skp~kyqlhlheScVLSlKFa~cGkwfvStG--kDn 655 (705)
T KOG0639|consen 594 QIFSLGYCPTGDW-LAVGM--E----------NSNVEVLHT---SKPEKYQLHLHESCVLSLKFAYCGKWFVSTG--KDN 655 (705)
T ss_pred hheecccCCCccc-eeeec--c----------cCcEEEEec---CCccceeecccccEEEEEEecccCceeeecC--chh
Confidence 2346778899987 54321 1 112444444 3344456766677788999999999888653 334
Q ss_pred ceEEEEEcCC
Q 005240 323 QTRTWLVCPG 332 (706)
Q Consensus 323 ~~~l~~~d~~ 332 (706)
....|+..-.
T Consensus 656 lLnawrtPyG 665 (705)
T KOG0639|consen 656 LLNAWRTPYG 665 (705)
T ss_pred hhhhccCccc
Confidence 4456666543
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00016 Score=74.01 Aligned_cols=236 Identities=13% Similarity=0.076 Sum_probs=123.4
Q ss_pred ceeEeecCCCCCCCC-eeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCc-
Q 005240 6 GIGIHRLLPDDSLGP-EKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI- 83 (706)
Q Consensus 6 ~~~~~~~~~~~~~g~-~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~- 83 (706)
.|.++|+..=+..-+ -++|. ..+...+...+|||.|..|+.++ +..+.-++|-+|-+......+.--
T Consensus 190 ~v~~wDf~gMdas~~~fr~l~-P~E~h~i~sl~ys~Tg~~iLvvs----------g~aqakl~DRdG~~~~e~~KGDQYI 258 (641)
T KOG0772|consen 190 TVKFWDFQGMDASMRSFRQLQ-PCETHQINSLQYSVTGDQILVVS----------GSAQAKLLDRDGFEIVEFSKGDQYI 258 (641)
T ss_pred eEEEEecccccccchhhhccC-cccccccceeeecCCCCeEEEEe----------cCcceeEEccCCceeeeeeccchhh
Confidence 455666644222222 23332 23455788999999999998874 445666667666554333221100
Q ss_pred -------cccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhccc
Q 005240 84 -------CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTT 156 (706)
Q Consensus 84 -------~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 156 (706)
+--+.+..-.|.|+.+-.+.+.... +.
T Consensus 259 ~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~D----------------------------------------------gt 292 (641)
T KOG0772|consen 259 RDMYNTKGHIAELTCGCWHPDNKEEFLTCSYD----------------------------------------------GT 292 (641)
T ss_pred hhhhccCCceeeeeccccccCcccceEEecCC----------------------------------------------Cc
Confidence 0011234557999988666553211 11
Q ss_pred ceEEEEccCC-Cceec---CC-C--ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCC
Q 005240 157 AQLVLGSLDG-TAKDF---GT-P--AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPP 229 (706)
Q Consensus 157 ~~l~~~~l~g-~~~~l---t~-~--~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 229 (706)
-+||-++-.. +.+.+ .. + -.+..++|+|||+.||-.-.++ .|-+|+..+-.++.......
T Consensus 293 lRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DG-------------SIQ~W~~~~~~v~p~~~vk~ 359 (641)
T KOG0772|consen 293 LRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDG-------------SIQIWDKGSRTVRPVMKVKD 359 (641)
T ss_pred EEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCC-------------ceeeeecCCcccccceEeee
Confidence 2333222211 22211 11 1 3567899999999987554443 57778764332222211111
Q ss_pred CCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEE-ee--ccccccccee
Q 005240 230 AEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEIL-HK--LDLRFRSVSW 306 (706)
Q Consensus 230 ~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l-~~--~~~~~~~~~w 306 (706)
+.... .++..++||+||+. |+- -+.+ +.|.+||++ .-.++-.. +. ....-.+..|
T Consensus 360 AH~~g-------~~Itsi~FS~dg~~-LlS----Rg~D--------~tLKvWDLr--q~kkpL~~~tgL~t~~~~tdc~F 417 (641)
T KOG0772|consen 360 AHLPG-------QDITSISFSYDGNY-LLS----RGFD--------DTLKVWDLR--QFKKPLNVRTGLPTPFPGTDCCF 417 (641)
T ss_pred ccCCC-------CceeEEEeccccch-hhh----ccCC--------Cceeeeecc--ccccchhhhcCCCccCCCCcccc
Confidence 11000 12447899999997 541 1111 247888884 11121111 11 2334567789
Q ss_pred cCCCceEEEEeec--cccceEEEEEcCCC
Q 005240 307 CDDSLALVNETWY--KTSQTRTWLVCPGS 333 (706)
Q Consensus 307 spDg~~l~~~~~~--~~~~~~l~~~d~~~ 333 (706)
|||.+.|+..... ......|+.+|..+
T Consensus 418 SPd~kli~TGtS~~~~~~~g~L~f~d~~t 446 (641)
T KOG0772|consen 418 SPDDKLILTGTSAPNGMTAGTLFFFDRMT 446 (641)
T ss_pred CCCceEEEecccccCCCCCceEEEEeccc
Confidence 9999988765432 22444688888666
|
|
| >KOG4627 consensus Kynurenine formamidase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.17 E-value=4.6e-06 Score=75.22 Aligned_cols=132 Identities=16% Similarity=0.187 Sum_probs=88.2
Q ss_pred CCceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEE
Q 005240 479 SLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAV 558 (706)
Q Consensus 479 ~~~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v 558 (706)
..+.|.+.|-- .| .-...++.|.+ . -|++|++|||.+..++ ..........+..+||.|
T Consensus 42 i~r~e~l~Yg~-~g-~q~VDIwg~~~----~---~klfIfIHGGYW~~g~------------rk~clsiv~~a~~~gY~v 100 (270)
T KOG4627|consen 42 IIRVEHLRYGE-GG-RQLVDIWGSTN----Q---AKLFIFIHGGYWQEGD------------RKMCLSIVGPAVRRGYRV 100 (270)
T ss_pred ccchhccccCC-CC-ceEEEEecCCC----C---ccEEEEEecchhhcCc------------hhcccchhhhhhhcCeEE
Confidence 34555565543 33 33445777754 1 4799999999875311 111222344566799999
Q ss_pred EEcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhC-CCceeEEEeccCCC
Q 005240 559 LAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHA-PHLFCCGIARSGSY 637 (706)
Q Consensus 559 ~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~-p~~~~a~v~~~~~~ 637 (706)
... ||+..- ......+-+.++...++|+.+... ..++|.+.|||.|++|+..+.+|- ..++.+++..+|++
T Consensus 101 asv------gY~l~~-q~htL~qt~~~~~~gv~filk~~~-n~k~l~~gGHSaGAHLa~qav~R~r~prI~gl~l~~GvY 172 (270)
T KOG4627|consen 101 ASV------GYNLCP-QVHTLEQTMTQFTHGVNFILKYTE-NTKVLTFGGHSAGAHLAAQAVMRQRSPRIWGLILLCGVY 172 (270)
T ss_pred EEe------ccCcCc-ccccHHHHHHHHHHHHHHHHHhcc-cceeEEEcccchHHHHHHHHHHHhcCchHHHHHHHhhHh
Confidence 873 333221 122456778889999999988632 456799999999999999998764 34899999999998
Q ss_pred CC
Q 005240 638 NK 639 (706)
Q Consensus 638 d~ 639 (706)
+.
T Consensus 173 ~l 174 (270)
T KOG4627|consen 173 DL 174 (270)
T ss_pred hH
Confidence 74
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.16 E-value=4.1e-05 Score=76.04 Aligned_cols=145 Identities=10% Similarity=0.143 Sum_probs=86.5
Q ss_pred ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCC
Q 005240 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (706)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~ 254 (706)
..++.+.||++|.+++-. ... .-|.+|..+=..++.+..... ..++.++|||...
T Consensus 139 s~Vr~m~ws~~g~wmiSg-D~g------------G~iKyWqpnmnnVk~~~ahh~------------eaIRdlafSpnDs 193 (464)
T KOG0284|consen 139 SPVRTMKWSHNGTWMISG-DKG------------GMIKYWQPNMNNVKIIQAHHA------------EAIRDLAFSPNDS 193 (464)
T ss_pred ccceeEEEccCCCEEEEc-CCC------------ceEEecccchhhhHHhhHhhh------------hhhheeccCCCCc
Confidence 578899999999998633 222 367778776443333222211 1266889999665
Q ss_pred ceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCCC
Q 005240 255 STLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK 334 (706)
Q Consensus 255 ~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~ 334 (706)
. |+... +.+.|.+||.. ...+.++|..+...+..+.|.|.-..|+..+ .+ . -+-.+|..++
T Consensus 194 k---F~t~S----------dDg~ikiWdf~--~~kee~vL~GHgwdVksvdWHP~kgLiasgs-kD-n--lVKlWDprSg 254 (464)
T KOG0284|consen 194 K---FLTCS----------DDGTIKIWDFR--MPKEERVLRGHGWDVKSVDWHPTKGLIASGS-KD-N--LVKLWDPRSG 254 (464)
T ss_pred e---eEEec----------CCCeEEEEecc--CCchhheeccCCCCcceeccCCccceeEEcc-CC-c--eeEeecCCCc
Confidence 4 34322 22357777762 3345566777888999999999966566543 22 2 4667788875
Q ss_pred CCCceeeecCcccccccCCCCCceEeccCCCEEEEee
Q 005240 335 DVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 335 ~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 371 (706)
. +...|.... . .+..+.|+++|.+|+...
T Consensus 255 ~-cl~tlh~HK-n------tVl~~~f~~n~N~Llt~s 283 (464)
T KOG0284|consen 255 S-CLATLHGHK-N------TVLAVKFNPNGNWLLTGS 283 (464)
T ss_pred c-hhhhhhhcc-c------eEEEEEEcCCCCeeEEcc
Confidence 2 222221110 1 122367899998876654
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00064 Score=65.18 Aligned_cols=220 Identities=13% Similarity=0.040 Sum_probs=131.8
Q ss_pred ceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccc
Q 005240 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (706)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 85 (706)
.|+++++.. .=.....+++... -+..+.|++||+.|+-..+ ...+..+|+++|+..+--.....
T Consensus 70 ~I~LWnv~g--dceN~~~lkgHsg--AVM~l~~~~d~s~i~S~gt----------Dk~v~~wD~~tG~~~rk~k~h~~-- 133 (338)
T KOG0265|consen 70 AIVLWNVYG--DCENFWVLKGHSG--AVMELHGMRDGSHILSCGT----------DKTVRGWDAETGKRIRKHKGHTS-- 133 (338)
T ss_pred eEEEEeccc--cccceeeeccccc--eeEeeeeccCCCEEEEecC----------CceEEEEecccceeeehhccccc--
Confidence 466777654 2233444443333 3788999999999966542 36889999999875543322222
Q ss_pred cccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccC
Q 005240 86 NAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD 165 (706)
Q Consensus 86 ~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~ 165 (706)
-+..+.=+.=|-.|+.... ..+++-++|..
T Consensus 134 --~vNs~~p~rrg~~lv~Sgs------------------------------------------------dD~t~kl~D~R 163 (338)
T KOG0265|consen 134 --FVNSLDPSRRGPQLVCSGS------------------------------------------------DDGTLKLWDIR 163 (338)
T ss_pred --eeeecCccccCCeEEEecC------------------------------------------------CCceEEEEeec
Confidence 1333332233444554421 12577778883
Q ss_pred -CCceecC-CCceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCC
Q 005240 166 -GTAKDFG-TPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREG 243 (706)
Q Consensus 166 -g~~~~lt-~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g 243 (706)
.++.++. ......++.|.-++..+.-..-+ ++|-+||+-.....-+..+.. +-
T Consensus 164 ~k~~~~t~~~kyqltAv~f~d~s~qv~sggId-------------n~ikvWd~r~~d~~~~lsGh~------------Dt 218 (338)
T KOG0265|consen 164 KKEAIKTFENKYQLTAVGFKDTSDQVISGGID-------------NDIKVWDLRKNDGLYTLSGHA------------DT 218 (338)
T ss_pred ccchhhccccceeEEEEEecccccceeecccc-------------CceeeeccccCcceEEeeccc------------Cc
Confidence 3343333 33678899999999888643322 478999996554444443321 11
Q ss_pred CcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCc-eEEeec-----ccccccceecCCCceEEEEe
Q 005240 244 MRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP-EILHKL-----DLRFRSVSWCDDSLALVNET 317 (706)
Q Consensus 244 ~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~-~~l~~~-----~~~~~~~~wspDg~~l~~~~ 317 (706)
+..+.-||+|.. |. . ......+.+||+.|+..+++ ..+... ....-.-+|||++..+.+.+
T Consensus 219 It~lsls~~gs~-ll--s----------nsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags 285 (338)
T KOG0265|consen 219 ITGLSLSRYGSF-LL--S----------NSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGS 285 (338)
T ss_pred eeeEEeccCCCc-cc--c----------ccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCcccccc
Confidence 346788899886 32 1 11233588899988777766 334322 22334568999999888766
Q ss_pred eccccceEEEEEcCCC
Q 005240 318 WYKTSQTRTWLVCPGS 333 (706)
Q Consensus 318 ~~~~~~~~l~~~d~~~ 333 (706)
.+ ..+|++|..+
T Consensus 286 ~d----r~vyvwd~~~ 297 (338)
T KOG0265|consen 286 AD----RFVYVWDTTS 297 (338)
T ss_pred cc----ceEEEeeccc
Confidence 33 3588888776
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00042 Score=65.44 Aligned_cols=150 Identities=15% Similarity=0.225 Sum_probs=94.0
Q ss_pred ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCC
Q 005240 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (706)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~ 254 (706)
..++.++|||.|++|+..+.+. .+.+|.-.+++..-+....+.+ +.+..++||++|+
T Consensus 62 rsVRsvAwsp~g~~La~aSFD~-------------t~~Iw~k~~~efecv~~lEGHE----------nEVK~Vaws~sG~ 118 (312)
T KOG0645|consen 62 RSVRSVAWSPHGRYLASASFDA-------------TVVIWKKEDGEFECVATLEGHE----------NEVKCVAWSASGN 118 (312)
T ss_pred heeeeeeecCCCcEEEEeeccc-------------eEEEeecCCCceeEEeeeeccc----------cceeEEEEcCCCC
Confidence 4788999999999998777653 5666666666666666665554 3355789999999
Q ss_pred ceEEEEEeccCCCCccccCccceeeeecCCCCCCCCce---EEeecccccccceecCCCceEEEEeeccccceEEEEEcC
Q 005240 255 STLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPE---ILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCP 331 (706)
Q Consensus 255 ~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~---~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~ 331 (706)
. |+.++ ++ . -+|+|.++ ++++.. .|..+...+-.+.|.|---.|+ ...++ ...++|+-+.
T Consensus 119 ~-LATCS-RD---K--------SVWiWe~d--eddEfec~aVL~~HtqDVK~V~WHPt~dlL~-S~SYD-nTIk~~~~~~ 181 (312)
T KOG0645|consen 119 Y-LATCS-RD---K--------SVWIWEID--EDDEFECIAVLQEHTQDVKHVIWHPTEDLLF-SCSYD-NTIKVYRDED 181 (312)
T ss_pred E-EEEee-CC---C--------eEEEEEec--CCCcEEEEeeeccccccccEEEEcCCcceeE-EeccC-CeEEEEeecC
Confidence 8 77553 11 1 37788874 445544 3556677888899999644444 43454 4567887765
Q ss_pred CCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEee
Q 005240 332 GSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 332 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 371 (706)
+. .-+..+..+..-. ....+.|.+.|.+++...
T Consensus 182 dd-dW~c~~tl~g~~~------TVW~~~F~~~G~rl~s~s 214 (312)
T KOG0645|consen 182 DD-DWECVQTLDGHEN------TVWSLAFDNIGSRLVSCS 214 (312)
T ss_pred CC-CeeEEEEecCccc------eEEEEEecCCCceEEEec
Confidence 32 1222222332211 223456788887776654
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.0024 Score=62.98 Aligned_cols=179 Identities=16% Similarity=0.167 Sum_probs=109.5
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCc-eeecccCCCccccccccceEEecCCcEEEEEecCCCC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-AKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~-~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~ 110 (706)
.+..+..+|+-+++|.. .+...-|+++..+|+ +-.+|.++.. +....||-||.+|+..-
T Consensus 66 svFavsl~P~~~l~aTG----------GgDD~AflW~~~~ge~~~eltgHKDS-----Vt~~~FshdgtlLATGd----- 125 (399)
T KOG0296|consen 66 SVFAVSLHPNNNLVATG----------GGDDLAFLWDISTGEFAGELTGHKDS-----VTCCSFSHDGTLLATGD----- 125 (399)
T ss_pred ceEEEEeCCCCceEEec----------CCCceEEEEEccCCcceeEecCCCCc-----eEEEEEccCceEEEecC-----
Confidence 57788899976666553 333455777777765 4445544443 78899999999888541
Q ss_pred CCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CC-CceecCCC-ceEeeeeeCCCCc
Q 005240 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTP-AVYTAVEPSPDQK 187 (706)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g-~~~~lt~~-~~~~~~~~SpDG~ 187 (706)
..+.|.++.. +| ....+... ..+..+.|.|-+.
T Consensus 126 --------------------------------------------msG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~ 161 (399)
T KOG0296|consen 126 --------------------------------------------MSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAH 161 (399)
T ss_pred --------------------------------------------CCccEEEEEcccCceEEEeecccCceEEEEeccccc
Confidence 1145666666 44 44445433 7889999999988
Q ss_pred EEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCC
Q 005240 188 YVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGD 267 (706)
Q Consensus 188 ~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~ 267 (706)
.|++.+... .+|.|.+..+...++..+... |. .-| .|.|||+. |+... .
T Consensus 162 illAG~~DG-------------svWmw~ip~~~~~kv~~Gh~~---~c-----t~G----~f~pdGKr-~~tgy-~---- 210 (399)
T KOG0296|consen 162 ILLAGSTDG-------------SVWMWQIPSQALCKVMSGHNS---PC-----TCG----EFIPDGKR-ILTGY-D---- 210 (399)
T ss_pred EEEeecCCC-------------cEEEEECCCcceeeEecCCCC---Cc-----ccc----cccCCCce-EEEEe-c----
Confidence 887766553 799999997655566555322 10 012 68899997 54331 1
Q ss_pred CccccCccceeeeecCCCCCCCCce-EEeecc-cccccceecCCCceEEE
Q 005240 268 ANVEVSPRDIIYTQPAEPAEGEKPE-ILHKLD-LRFRSVSWCDDSLALVN 315 (706)
Q Consensus 268 ~~~~~~~~~~l~~~d~~~~~~~~~~-~l~~~~-~~~~~~~wspDg~~l~~ 315 (706)
.+.|.+|+. .++++- .++... ....-+..+.++..++-
T Consensus 211 -------dgti~~Wn~---ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~ 250 (399)
T KOG0296|consen 211 -------DGTIIVWNP---KTGQPLHKITQAEGLELPCISLNLAGSTLTK 250 (399)
T ss_pred -------CceEEEEec---CCCceeEEecccccCcCCccccccccceeEe
Confidence 235778887 666543 333222 22233345555555443
|
|
| >PF03583 LIP: Secretory lipase ; InterPro: IPR005152 This entry represents a family of secreted lipases | Back alignment and domain information |
|---|
Probab=98.13 E-value=3.6e-05 Score=77.77 Aligned_cols=90 Identities=27% Similarity=0.235 Sum_probs=59.1
Q ss_pred hHHHHHHHCCeEEEEcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHH-cCCCCCCcEEEEEechHHHHHHHHHHh--
Q 005240 546 TSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVR-RGVADPSRIAVGGHSYGAFMTAHLLAH-- 622 (706)
Q Consensus 546 ~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~-~~~id~~~i~i~G~S~GG~~a~~~~~~-- 622 (706)
.....|+++||+|+.++|. |.|..+.........+-|.+.|++.+.. .+.-...+++++|+|.||+-+++++..
T Consensus 17 ~~l~~~L~~GyaVv~pDY~---Glg~~y~~~~~~a~avLD~vRAA~~~~~~~gl~~~~~v~l~GySqGG~Aa~~AA~l~~ 93 (290)
T PF03583_consen 17 PFLAAWLARGYAVVAPDYE---GLGTPYLNGRSEAYAVLDAVRAARNLPPKLGLSPSSRVALWGYSQGGQAALWAAELAP 93 (290)
T ss_pred HHHHHHHHCCCEEEecCCC---CCCCcccCcHhHHHHHHHHHHHHHhcccccCCCCCCCEEEEeeCccHHHHHHHHHHhH
Confidence 3456788999999998886 4444544332222334444454444433 233234799999999999999988744
Q ss_pred --CCCc---eeEEEeccCCCC
Q 005240 623 --APHL---FCCGIARSGSYN 638 (706)
Q Consensus 623 --~p~~---~~a~v~~~~~~d 638 (706)
.|+. +.++++.++..|
T Consensus 94 ~YApeL~~~l~Gaa~gg~~~d 114 (290)
T PF03583_consen 94 SYAPELNRDLVGAAAGGPPAD 114 (290)
T ss_pred HhCcccccceeEEeccCCccC
Confidence 3654 788888887755
|
Family members include the LIP lipases from Candida albicans, which are expressed and secreted during the infection cycle of these pathogens [].; GO: 0004806 triglyceride lipase activity, 0016042 lipid catabolic process |
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00018 Score=73.26 Aligned_cols=236 Identities=15% Similarity=0.191 Sum_probs=143.0
Q ss_pred CCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCC-CceeecccCCCccccccccceEEecC
Q 005240 19 GPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAET-GEAKPLFESPDICLNAVFGSFVWVNN 97 (706)
Q Consensus 19 g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~-g~~~~lt~~~~~~~~~~~~~~~wSpD 97 (706)
-.++++..|..|.-+-.+++|-.-+++ |+ .|+..|-++|+.. +...++...+--.-...+++...+||
T Consensus 408 rharq~~tL~HGEvVcAvtIS~~trhV-yT----------gGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pd 476 (705)
T KOG0639|consen 408 RHARQINTLAHGEVVCAVTISNPTRHV-YT----------GGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPD 476 (705)
T ss_pred chHHhhhhhccCcEEEEEEecCCccee-Ee----------cCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCC
Confidence 356667667777767788999998888 43 3445555566543 33344433221000112678899999
Q ss_pred CcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCC-Cce---ecCC
Q 005240 98 STLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TAK---DFGT 173 (706)
Q Consensus 98 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g-~~~---~lt~ 173 (706)
|+.|+.... ...|-+|||.. .++ .|+.
T Consensus 477 grtLivGGe-------------------------------------------------astlsiWDLAapTprikaelts 507 (705)
T KOG0639|consen 477 GRTLIVGGE-------------------------------------------------ASTLSIWDLAAPTPRIKAELTS 507 (705)
T ss_pred CceEEeccc-------------------------------------------------cceeeeeeccCCCcchhhhcCC
Confidence 999887531 14667778844 222 2332
Q ss_pred C-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCe-eEEcccCCCCCCCCcccCccCCCCcceeeec
Q 005240 174 P-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL-VRELCDLPPAEDIPVCYNSVREGMRSISWRA 251 (706)
Q Consensus 174 ~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~~~~~p~~~~~~~~g~~~~~~sp 251 (706)
. ..-..++.|||.| |.|..... ..|.+||+-... +|++-... +|...|..|+
T Consensus 508 sapaCyALa~spDak-vcFsccsd------------GnI~vwDLhnq~~VrqfqGht-------------DGascIdis~ 561 (705)
T KOG0639|consen 508 SAPACYALAISPDAK-VCFSCCSD------------GNIAVWDLHNQTLVRQFQGHT-------------DGASCIDISK 561 (705)
T ss_pred cchhhhhhhcCCccc-eeeeeccC------------CcEEEEEcccceeeecccCCC-------------CCceeEEecC
Confidence 2 2234678999986 45666543 379999997554 44443322 5566889999
Q ss_pred CCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEe--ecccccccceecCCCceEEEEeeccccceEEEEE
Q 005240 252 DKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH--KLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLV 329 (706)
Q Consensus 252 dg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~--~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~ 329 (706)
||.. |+ . +|-. +.|..||+ . +.+++. ....++.++..+|.+.+|++.. .+..++++
T Consensus 562 dGtk-lW-T----GGlD-------ntvRcWDl---r--egrqlqqhdF~SQIfSLg~cP~~dWlavGM----ens~vevl 619 (705)
T KOG0639|consen 562 DGTK-LW-T----GGLD-------NTVRCWDL---R--EGRQLQQHDFSSQIFSLGYCPTGDWLAVGM----ENSNVEVL 619 (705)
T ss_pred CCce-ee-c----CCCc-------cceeehhh---h--hhhhhhhhhhhhhheecccCCCccceeeec----ccCcEEEE
Confidence 9987 54 2 2221 24778888 2 333333 3467888999999999999864 34457777
Q ss_pred cCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEee
Q 005240 330 CPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 330 d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 371 (706)
...+. +.-+|.... ++ +.++.|++-|+|.+.+-
T Consensus 620 h~skp--~kyqlhlhe--Sc-----VLSlKFa~cGkwfvStG 652 (705)
T KOG0639|consen 620 HTSKP--EKYQLHLHE--SC-----VLSLKFAYCGKWFVSTG 652 (705)
T ss_pred ecCCc--cceeecccc--cE-----EEEEEecccCceeeecC
Confidence 76664 234442211 11 11256788888876653
|
|
| >PRK03592 haloalkane dehalogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.7e-05 Score=81.17 Aligned_cols=97 Identities=12% Similarity=0.053 Sum_probs=66.5
Q ss_pred eEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCCCCch--hhHHHHHHHHHHHHH
Q 005240 514 PCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPND--RFVEQLVSSAEAAVE 591 (706)
Q Consensus 514 p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~--~~~~~~~~D~~~~~~ 591 (706)
|.||++||.+.. ...| ...+..|++.+ .|++++.+ |+|.+.... .......+|+...++
T Consensus 28 ~~vvllHG~~~~-----------~~~w----~~~~~~L~~~~-~via~D~~---G~G~S~~~~~~~~~~~~a~dl~~ll~ 88 (295)
T PRK03592 28 DPIVFLHGNPTS-----------SYLW----RNIIPHLAGLG-RCLAPDLI---GMGASDKPDIDYTFADHARYLDAWFD 88 (295)
T ss_pred CEEEEECCCCCC-----------HHHH----HHHHHHHhhCC-EEEEEcCC---CCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 468889996421 0111 13455666676 88875555 566554321 234555666666655
Q ss_pred HHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccC
Q 005240 592 EVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSG 635 (706)
Q Consensus 592 ~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~ 635 (706)
.+ +.+++.+.|||+||.+++.++.++|+++++++..++
T Consensus 89 ~l------~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lil~~~ 126 (295)
T PRK03592 89 AL------GLDDVVLVGHDWGSALGFDWAARHPDRVRGIAFMEA 126 (295)
T ss_pred Hh------CCCCeEEEEECHHHHHHHHHHHhChhheeEEEEECC
Confidence 54 236899999999999999999999999999998886
|
|
| >PRK06489 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=2.9e-05 Score=81.91 Aligned_cols=75 Identities=13% Similarity=0.168 Sum_probs=49.2
Q ss_pred HCCeEEEEcCCCCcCCCCCCCCch---------hhHHHHHHHHHHHHHHHHHcCCCCCCcE-EEEEechHHHHHHHHHHh
Q 005240 553 ARRFAVLAGPSIPIIGEGDKLPND---------RFVEQLVSSAEAAVEEVVRRGVADPSRI-AVGGHSYGAFMTAHLLAH 622 (706)
Q Consensus 553 ~~G~~v~~~~~~~~~g~g~~~~~~---------~~~~~~~~D~~~~~~~l~~~~~id~~~i-~i~G~S~GG~~a~~~~~~ 622 (706)
+.+|.|++++.+ |+|.+.... .......+|+.+. +.+. .+-+++ .|+|+||||++++.++.+
T Consensus 103 ~~~~~Via~Dl~---GhG~S~~p~~~~~~~~~~~~~~~~a~~~~~~---l~~~--lgi~~~~~lvG~SmGG~vAl~~A~~ 174 (360)
T PRK06489 103 ASKYFIILPDGI---GHGKSSKPSDGLRAAFPRYDYDDMVEAQYRL---VTEG--LGVKHLRLILGTSMGGMHAWMWGEK 174 (360)
T ss_pred ccCCEEEEeCCC---CCCCCCCCCcCCCCCCCcccHHHHHHHHHHH---HHHh--cCCCceeEEEEECHHHHHHHHHHHh
Confidence 578999996665 455443211 1123333333332 3222 123566 489999999999999999
Q ss_pred CCCceeEEEeccC
Q 005240 623 APHLFCCGIARSG 635 (706)
Q Consensus 623 ~p~~~~a~v~~~~ 635 (706)
+|++++++|..++
T Consensus 175 ~P~~V~~LVLi~s 187 (360)
T PRK06489 175 YPDFMDALMPMAS 187 (360)
T ss_pred Cchhhheeeeecc
Confidence 9999999998765
|
|
| >COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.3e-05 Score=77.12 Aligned_cols=129 Identities=17% Similarity=0.120 Sum_probs=78.3
Q ss_pred EEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCC
Q 005240 486 KYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIP 565 (706)
Q Consensus 486 ~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~ 565 (706)
.+...||..+...+..++. + .+ .|+||.+||= .++-. +.+...++..+.++||.|++.+-||
T Consensus 53 ~v~~pdg~~~~ldw~~~p~-~-~~---~P~vVl~HGL-----------~G~s~--s~y~r~L~~~~~~rg~~~Vv~~~Rg 114 (345)
T COG0429 53 RLETPDGGFIDLDWSEDPR-A-AK---KPLVVLFHGL-----------EGSSN--SPYARGLMRALSRRGWLVVVFHFRG 114 (345)
T ss_pred EEEcCCCCEEEEeeccCcc-c-cC---CceEEEEecc-----------CCCCc--CHHHHHHHHHHHhcCCeEEEEeccc
Confidence 4444566666665665443 1 12 5999999982 22211 1122234555678999999877776
Q ss_pred cCCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHH-HHHHHHHHhCCC-ceeEEEeccC
Q 005240 566 IIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGA-FMTAHLLAHAPH-LFCCGIARSG 635 (706)
Q Consensus 566 ~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG-~~a~~~~~~~p~-~~~a~v~~~~ 635 (706)
-.|.-.... .-+-.....|+..++++++++.. +.++.++|.|+|| +||.+++-...+ ...|+++.+.
T Consensus 115 cs~~~n~~p-~~yh~G~t~D~~~~l~~l~~~~~--~r~~~avG~SLGgnmLa~ylgeeg~d~~~~aa~~vs~ 183 (345)
T COG0429 115 CSGEANTSP-RLYHSGETEDIRFFLDWLKARFP--PRPLYAVGFSLGGNMLANYLGEEGDDLPLDAAVAVSA 183 (345)
T ss_pred ccCCcccCc-ceecccchhHHHHHHHHHHHhCC--CCceEEEEecccHHHHHHHHHhhccCcccceeeeeeC
Confidence 554322111 11222345899999999998754 5799999999999 666666644322 3455555553
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0032 Score=60.92 Aligned_cols=230 Identities=13% Similarity=0.113 Sum_probs=121.1
Q ss_pred ceEEEEccCC--CceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecC-CCeeEEcccCCCCCC
Q 005240 157 AQLVLGSLDG--TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD-GKLVRELCDLPPAED 232 (706)
Q Consensus 157 ~~l~~~~l~g--~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~l~~~~~~~~ 232 (706)
+.+..+|+.. -.+.++.. ..+.+++||+||+.|+-.+.+ ..+.+||+- |...+++-..
T Consensus 45 G~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D-------------~si~lwDl~~gs~l~rirf~----- 106 (405)
T KOG1273|consen 45 GRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRD-------------WSIKLWDLLKGSPLKRIRFD----- 106 (405)
T ss_pred CcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCC-------------ceeEEEeccCCCceeEEEcc-----
Confidence 6788888844 34445555 678899999999999755543 478899997 4444443221
Q ss_pred CCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeec-cccc-ccc---eec
Q 005240 233 IPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL-DLRF-RSV---SWC 307 (706)
Q Consensus 233 ~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~-~~~~-~~~---~ws 307 (706)
.| ++...|.|-.+. .+.+...+.. -+++++ .....+.|... ++.. ..+ .|.
T Consensus 107 sp---------v~~~q~hp~k~n-~~va~~~~~s-----------p~vi~~---s~~~h~~Lp~d~d~dln~sas~~~fd 162 (405)
T KOG1273|consen 107 SP---------VWGAQWHPRKRN-KCVATIMEES-----------PVVIDF---SDPKHSVLPKDDDGDLNSSASHGVFD 162 (405)
T ss_pred Cc---------cceeeeccccCC-eEEEEEecCC-----------cEEEEe---cCCceeeccCCCcccccccccccccc
Confidence 12 345678886654 3322211111 123333 22333334322 2211 122 377
Q ss_pred CCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCC
Q 005240 308 DDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRG 387 (706)
Q Consensus 308 pDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g 387 (706)
+-|++|+... ..+.|-++|..+- +.+.-+. +..+ ...-++.++..|+.+++...+
T Consensus 163 r~g~yIitGt----sKGkllv~~a~t~--e~vas~r--its~---~~IK~I~~s~~g~~liiNtsD-------------- 217 (405)
T KOG1273|consen 163 RRGKYIITGT----SKGKLLVYDAETL--ECVASFR--ITSV---QAIKQIIVSRKGRFLIINTSD-------------- 217 (405)
T ss_pred CCCCEEEEec----CcceEEEEecchh--eeeeeee--echh---eeeeEEEEeccCcEEEEecCC--------------
Confidence 8899988754 3446777887773 2111111 0000 011224456777777665421
Q ss_pred CCCCCCCCceeeeecC-------CCceeeeecccchhhhhhhhhhccC-CC-ceecccCCCEEEEEEecCCCCcEEEEEE
Q 005240 388 FTPEGNIPFLDLFDIN-------TGSKERIWESNREKYFETAVALVFG-QG-EEDINLNQLKILTSKESKTEITQYHILS 458 (706)
Q Consensus 388 ~~~~~~~~~l~~~d~~-------~g~~~~l~~~~~~~~~~~~~~~~~~-~~-~~~~s~Dg~~l~~~~~~~~~p~~v~~~~ 458 (706)
| .+..+++. .|+.+. ...+..+... .+ ...||.||.+++... .....+|.|.
T Consensus 218 ------R-vIR~ye~~di~~~~r~~e~e~---------~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s---~~aHaLYIWE 278 (405)
T KOG1273|consen 218 ------R-VIRTYEISDIDDEGRDGEVEP---------EHKLQDVVNKLQWKKCCFSGDGEYVCAGS---ARAHALYIWE 278 (405)
T ss_pred ------c-eEEEEehhhhcccCccCCcCh---------hHHHHHHHhhhhhhheeecCCccEEEecc---ccceeEEEEe
Confidence 1 12223321 111111 1122222221 12 467999997666432 4556799999
Q ss_pred CCCCceeEeecCCC
Q 005240 459 WPLKKSSQITNFPH 472 (706)
Q Consensus 459 ~~~~~~~~lt~~~~ 472 (706)
...|...++.+-++
T Consensus 279 ~~~GsLVKILhG~k 292 (405)
T KOG1273|consen 279 KSIGSLVKILHGTK 292 (405)
T ss_pred cCCcceeeeecCCc
Confidence 88898888877654
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.08 E-value=9.8e-05 Score=72.34 Aligned_cols=83 Identities=22% Similarity=0.342 Sum_probs=58.9
Q ss_pred cccceeEeecCCCCCCCCeeeeecCCCC-CcccceeeCCCCCeEEEEeeccccccccCCceeEE-EEEcCCCceeecccC
Q 005240 3 FFTGIGIHRLLPDDSLGPEKEVHGYPDG-AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVW-IADAETGEAKPLFES 80 (706)
Q Consensus 3 ~~~~~~~~~~~~~~~~g~~~~i~~~~~~-~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~-~~d~~~g~~~~lt~~ 80 (706)
..++|-|.+++. |...+|. +.+ ...+..+|||||.+|.-+.- +....|| .-...+.+...+.
T Consensus 216 gsssi~iWdpdt----g~~~pL~--~~glgg~slLkwSPdgd~lfaAt~--------davfrlw~e~q~wt~erw~lg-- 279 (445)
T KOG2139|consen 216 GSSSIMIWDPDT----GQKIPLI--PKGLGGFSLLKWSPDGDVLFAATC--------DAVFRLWQENQSWTKERWILG-- 279 (445)
T ss_pred CcceEEEEcCCC----CCccccc--ccCCCceeeEEEcCCCCEEEEecc--------cceeeeehhcccceecceecc--
Confidence 457889999988 8888876 333 35788999999999954432 5667888 4444455544443
Q ss_pred CCccccccccceEEecCCcEEEEEec
Q 005240 81 PDICLNAVFGSFVWVNNSTLLIFTIP 106 (706)
Q Consensus 81 ~~~~~~~~~~~~~wSpDg~~l~~~~~ 106 (706)
.+. +..-.|||+|+.|.|...
T Consensus 280 sgr-----vqtacWspcGsfLLf~~s 300 (445)
T KOG2139|consen 280 SGR-----VQTACWSPCGSFLLFACS 300 (445)
T ss_pred CCc-----eeeeeecCCCCEEEEEEc
Confidence 222 677899999999998753
|
|
| >PLN02578 hydrolase | Back alignment and domain information |
|---|
Probab=98.07 E-value=2.3e-05 Score=82.41 Aligned_cols=75 Identities=20% Similarity=0.130 Sum_probs=53.3
Q ss_pred HCCeEEEEcCCCCcCCCCCCCCch--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEE
Q 005240 553 ARRFAVLAGPSIPIIGEGDKLPND--RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCG 630 (706)
Q Consensus 553 ~~G~~v~~~~~~~~~g~g~~~~~~--~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~ 630 (706)
+.+|.|+..+.+ |+|.+.... .......+|+.+.++.+. .+++.++|||+||++++.++.++|++++++
T Consensus 110 ~~~~~v~~~D~~---G~G~S~~~~~~~~~~~~a~~l~~~i~~~~------~~~~~lvG~S~Gg~ia~~~A~~~p~~v~~l 180 (354)
T PLN02578 110 AKKYKVYALDLL---GFGWSDKALIEYDAMVWRDQVADFVKEVV------KEPAVLVGNSLGGFTALSTAVGYPELVAGV 180 (354)
T ss_pred hcCCEEEEECCC---CCCCCCCcccccCHHHHHHHHHHHHHHhc------cCCeEEEEECHHHHHHHHHHHhChHhcceE
Confidence 467999997765 455443321 122334455655555442 367999999999999999999999999999
Q ss_pred EeccCC
Q 005240 631 IARSGS 636 (706)
Q Consensus 631 v~~~~~ 636 (706)
+..++.
T Consensus 181 vLv~~~ 186 (354)
T PLN02578 181 ALLNSA 186 (354)
T ss_pred EEECCC
Confidence 987653
|
|
| >KOG2564 consensus Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.06 E-value=2.8e-05 Score=73.94 Aligned_cols=115 Identities=23% Similarity=0.289 Sum_probs=77.6
Q ss_pred ceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHH-CCeEEE
Q 005240 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA-RRFAVL 559 (706)
Q Consensus 481 ~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~G~~v~ 559 (706)
+.|.+.+.+.+. ++..|+..|.. . +-|++++.|||+++. -+|. .+++.+.. .-+.++
T Consensus 49 ekedv~i~~~~~-t~n~Y~t~~~~---t---~gpil~l~HG~G~S~-----------LSfA----~~a~el~s~~~~r~~ 106 (343)
T KOG2564|consen 49 EKEDVSIDGSDL-TFNVYLTLPSA---T---EGPILLLLHGGGSSA-----------LSFA----IFASELKSKIRCRCL 106 (343)
T ss_pred cccccccCCCcc-eEEEEEecCCC---C---CccEEEEeecCcccc-----------hhHH----HHHHHHHhhcceeEE
Confidence 667777777665 89999999963 1 248999999986431 1221 23455553 455666
Q ss_pred EcCCCCcCCCCCCCCc---hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhC
Q 005240 560 AGPSIPIIGEGDKLPN---DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHA 623 (706)
Q Consensus 560 ~~~~~~~~g~g~~~~~---~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~ 623 (706)
+ .+-+|+|+.--. +-..+...+|+.+.++++-.. ++.+|.+.||||||.+|.+.+...
T Consensus 107 a---~DlRgHGeTk~~~e~dlS~eT~~KD~~~~i~~~fge---~~~~iilVGHSmGGaIav~~a~~k 167 (343)
T KOG2564|consen 107 A---LDLRGHGETKVENEDDLSLETMSKDFGAVIKELFGE---LPPQIILVGHSMGGAIAVHTAASK 167 (343)
T ss_pred E---eeccccCccccCChhhcCHHHHHHHHHHHHHHHhcc---CCCceEEEeccccchhhhhhhhhh
Confidence 6 344466655322 123556789999988888644 356799999999999998888665
|
|
| >PRK08775 homoserine O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=2.2e-05 Score=82.15 Aligned_cols=77 Identities=21% Similarity=0.198 Sum_probs=54.4
Q ss_pred HHHCCeEEEEcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCc-EEEEEechHHHHHHHHHHhCCCceeE
Q 005240 551 FLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSR-IAVGGHSYGAFMTAHLLAHAPHLFCC 629 (706)
Q Consensus 551 l~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~-i~i~G~S~GG~~a~~~~~~~p~~~~a 629 (706)
|.+.+|.|+.++.+| +|.+...........+|+.+.++.+ +-++ +.++||||||++++.++.++|++++.
T Consensus 95 L~~~~~~Vi~~Dl~G---~g~s~~~~~~~~~~a~dl~~ll~~l------~l~~~~~lvG~SmGG~vA~~~A~~~P~~V~~ 165 (343)
T PRK08775 95 LDPARFRLLAFDFIG---ADGSLDVPIDTADQADAIALLLDAL------GIARLHAFVGYSYGALVGLQFASRHPARVRT 165 (343)
T ss_pred cCccccEEEEEeCCC---CCCCCCCCCCHHHHHHHHHHHHHHc------CCCcceEEEEECHHHHHHHHHHHHChHhhhe
Confidence 434679999877664 4444322222345566666655544 2234 57999999999999999999999999
Q ss_pred EEeccCC
Q 005240 630 GIARSGS 636 (706)
Q Consensus 630 ~v~~~~~ 636 (706)
+|..++.
T Consensus 166 LvLi~s~ 172 (343)
T PRK08775 166 LVVVSGA 172 (343)
T ss_pred EEEECcc
Confidence 9988764
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0018 Score=64.14 Aligned_cols=227 Identities=15% Similarity=0.135 Sum_probs=126.6
Q ss_pred cccceeeCC-CCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCC
Q 005240 32 KINFVSWSP-DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (706)
Q Consensus 32 ~~~~~~~SP-DG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~ 110 (706)
+...+..+| ++.-+||.+. -..-++++|..+|+..+....+.. ...+..-.|||||++||.+-++- .
T Consensus 6 RgH~~a~~p~~~~avafaRR---------PG~~~~v~D~~~g~~~~~~~a~~g--RHFyGHg~fs~dG~~LytTEnd~-~ 73 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARR---------PGTFALVFDCRTGQLLQRLWAPPG--RHFYGHGVFSPDGRLLYTTENDY-E 73 (305)
T ss_pred cccceeeCCCCCeEEEEEeC---------CCcEEEEEEcCCCceeeEEcCCCC--CEEecCEEEcCCCCEEEEecccc-C
Confidence 367889999 6666666652 236788899998887654322221 11234668999999888663211 0
Q ss_pred CCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCCCceecC---CC-ceEeeeeeCCCC
Q 005240 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFG---TP-AVYTAVEPSPDQ 186 (706)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g~~~~lt---~~-~~~~~~~~SpDG 186 (706)
. .++.|-++|+....+++. .. -....+.|.|||
T Consensus 74 ~-------------------------------------------g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG 110 (305)
T PF07433_consen 74 T-------------------------------------------GRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDG 110 (305)
T ss_pred C-------------------------------------------CcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCC
Confidence 0 346788888864344443 22 356788899999
Q ss_pred cEEEEEeecc---Ccc--cccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEE
Q 005240 187 KYVLITSMHR---PYS--YKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVE 261 (706)
Q Consensus 187 ~~i~~~~~~~---~~~--~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~ 261 (706)
+.|++....= ++. .......+...|.+.|..++++..-...+... ...+.+.+++.+||. +++.
T Consensus 111 ~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~--------~~lSiRHLa~~~~G~--V~~a- 179 (305)
T PF07433_consen 111 ETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDL--------HQLSIRHLAVDGDGT--VAFA- 179 (305)
T ss_pred CEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccc--------cccceeeEEecCCCc--EEEE-
Confidence 9987644321 111 11111223355666665555432211111000 013467899999986 3332
Q ss_pred eccCCCCccccCccceeeeecCCCCCCCCceEEe-------ecccccccceecCCCceEEEEeeccccceEEEEEcCCCC
Q 005240 262 AQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH-------KLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK 334 (706)
Q Consensus 262 ~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~-------~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~ 334 (706)
..-.++... ....|.+... ++.++.+. .....+.++++++||..++.++-. ...+.++|.+++
T Consensus 180 ~Q~qg~~~~---~~PLva~~~~----g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPr---Gg~~~~~d~~tg 249 (305)
T PF07433_consen 180 MQYQGDPGD---APPLVALHRR----GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPR---GGRVAVWDAATG 249 (305)
T ss_pred EecCCCCCc---cCCeEEEEcC----CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCC---CCEEEEEECCCC
Confidence 233333221 1123555443 23333332 225678899999999988887633 335666687774
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0038 Score=63.13 Aligned_cols=145 Identities=11% Similarity=0.035 Sum_probs=78.2
Q ss_pred ceEEEEcc-CCCceecCCCceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCee-EEcccCCCCCCCC
Q 005240 157 AQLVLGSL-DGTAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIP 234 (706)
Q Consensus 157 ~~l~~~~l-~g~~~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~l~~~~~~~~~p 234 (706)
..|+.++. +|+.+.+..+..+.+...--++..|+... . .+++++.+.+.. +.++... .+...
T Consensus 47 ~~i~r~~~~~g~~~~~~~p~~~~~~~~~d~~g~Lv~~~-~--------------g~~~~~~~~~~~~t~~~~~~-~~~~~ 110 (307)
T COG3386 47 GRIHRLDPETGKKRVFPSPGGFSSGALIDAGGRLIACE-H--------------GVRLLDPDTGGKITLLAEPE-DGLPL 110 (307)
T ss_pred CeEEEecCCcCceEEEECCCCcccceeecCCCeEEEEc-c--------------ccEEEeccCCceeEEecccc-CCCCc
Confidence 68889988 56666665553333333333333443332 2 356666664444 3433322 21111
Q ss_pred cccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEE
Q 005240 235 VCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALV 314 (706)
Q Consensus 235 ~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~ 314 (706)
. ...+....|||+ +||................+.||+++. .++..+.+...-..-+.++||||++.++
T Consensus 111 ~-------r~ND~~v~pdG~--~wfgt~~~~~~~~~~~~~~G~lyr~~p---~g~~~~l~~~~~~~~NGla~SpDg~tly 178 (307)
T COG3386 111 N-------RPNDGVVDPDGR--IWFGDMGYFDLGKSEERPTGSLYRVDP---DGGVVRLLDDDLTIPNGLAFSPDGKTLY 178 (307)
T ss_pred C-------CCCceeEcCCCC--EEEeCCCccccCccccCCcceEEEEcC---CCCEEEeecCcEEecCceEECCCCCEEE
Confidence 1 112557788887 666543310000001112346999886 4444444444356678899999999888
Q ss_pred EEeeccccceEEEEEcCC
Q 005240 315 NETWYKTSQTRTWLVCPG 332 (706)
Q Consensus 315 ~~~~~~~~~~~l~~~d~~ 332 (706)
++.. ...+||+++.+
T Consensus 179 ~aDT---~~~~i~r~~~d 193 (307)
T COG3386 179 VADT---PANRIHRYDLD 193 (307)
T ss_pred EEeC---CCCeEEEEecC
Confidence 8642 34578888776
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0047 Score=73.67 Aligned_cols=126 Identities=14% Similarity=0.060 Sum_probs=68.8
Q ss_pred EeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCC---CcccCccCCCCcceeeecCC
Q 005240 177 YTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDI---PVCYNSVREGMRSISWRADK 253 (706)
Q Consensus 177 ~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~---p~~~~~~~~g~~~~~~spdg 253 (706)
...++++|++..|+++... ..+|++|+..++..+.+.. .+.... .......-..+..++++|||
T Consensus 685 P~gVa~dp~~g~LyVad~~------------~~~I~v~d~~~g~v~~~~G-~G~~~~~~g~~~~~~~~~~P~GIavspdG 751 (1057)
T PLN02919 685 PWDVCFEPVNEKVYIAMAG------------QHQIWEYNISDGVTRVFSG-DGYERNLNGSSGTSTSFAQPSGISLSPDL 751 (1057)
T ss_pred CeEEEEecCCCeEEEEECC------------CCeEEEEECCCCeEEEEec-CCccccCCCCccccccccCccEEEEeCCC
Confidence 3578999987788766543 2479999988776554432 111000 00000001235578999999
Q ss_pred CceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecc----------------------cccccceecCCCc
Q 005240 254 PSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLD----------------------LRFRSVSWCDDSL 311 (706)
Q Consensus 254 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~----------------------~~~~~~~wspDg~ 311 (706)
+. ||+. +.. .+.|.++|. +++..+.+.... .....+.+++||.
T Consensus 752 ~~-LYVA-Ds~----------n~~Irv~D~---~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~ 816 (1057)
T PLN02919 752 KE-LYIA-DSE----------SSSIRALDL---KTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ 816 (1057)
T ss_pred CE-EEEE-ECC----------CCeEEEEEC---CCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc
Confidence 87 6644 221 124667776 443332221100 1123567888887
Q ss_pred eEEEEeeccccceEEEEEcCCCC
Q 005240 312 ALVNETWYKTSQTRTWLVCPGSK 334 (706)
Q Consensus 312 ~l~~~~~~~~~~~~l~~~d~~~~ 334 (706)
|+++. . .+.+|.++|++++
T Consensus 817 -LYVAD-s--~N~rIrviD~~tg 835 (1057)
T PLN02919 817 -IYVAD-S--YNHKIKKLDPATK 835 (1057)
T ss_pred -EEEEE-C--CCCEEEEEECCCC
Confidence 33332 2 4567899998874
|
|
| >PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=4.7e-05 Score=75.38 Aligned_cols=97 Identities=11% Similarity=0.056 Sum_probs=61.8
Q ss_pred eEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCCCCc-hhhHHHHHHHHHHHHHH
Q 005240 514 PCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPN-DRFVEQLVSSAEAAVEE 592 (706)
Q Consensus 514 p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~-~~~~~~~~~D~~~~~~~ 592 (706)
|.||++||.+..+ ..| ......| .+|.|+.++.+ |+|.+... ........+|+.+.++.
T Consensus 3 p~vvllHG~~~~~-----------~~w----~~~~~~l--~~~~vi~~D~~---G~G~S~~~~~~~~~~~~~~l~~~l~~ 62 (242)
T PRK11126 3 PWLVFLHGLLGSG-----------QDW----QPVGEAL--PDYPRLYIDLP---GHGGSAAISVDGFADVSRLLSQTLQS 62 (242)
T ss_pred CEEEEECCCCCCh-----------HHH----HHHHHHc--CCCCEEEecCC---CCCCCCCccccCHHHHHHHHHHHHHH
Confidence 5689999964210 111 1223334 47999986655 55554332 12334445555554443
Q ss_pred HHHcCCCCCCcEEEEEechHHHHHHHHHHhCCC-ceeEEEeccCC
Q 005240 593 VVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH-LFCCGIARSGS 636 (706)
Q Consensus 593 l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~-~~~a~v~~~~~ 636 (706)
+ +.+++.++||||||.+++.++.++|+ ++++++..++.
T Consensus 63 ~------~~~~~~lvG~S~Gg~va~~~a~~~~~~~v~~lvl~~~~ 101 (242)
T PRK11126 63 Y------NILPYWLVGYSLGGRIAMYYACQGLAGGLCGLIVEGGN 101 (242)
T ss_pred c------CCCCeEEEEECHHHHHHHHHHHhCCcccccEEEEeCCC
Confidence 2 34789999999999999999999865 49988877643
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0066 Score=60.91 Aligned_cols=92 Identities=20% Similarity=0.113 Sum_probs=46.8
Q ss_pred ceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCC--c
Q 005240 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD--I 83 (706)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~--~ 83 (706)
.++|.|.+. ++- .+.-......++..||||+.++.+.+.-.....+....-|-++|.++-+++.-...+. +
T Consensus 18 rv~viD~d~----~k~---lGmi~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R 90 (342)
T PF06433_consen 18 RVYVIDADS----GKL---LGMIDTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPR 90 (342)
T ss_dssp EEEEEETTT----TEE---EEEEEEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B
T ss_pred eEEEEECCC----CcE---EEEeecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcch
Confidence 466766655 442 2222222466788999999998665521112222223446678887754322111111 1
Q ss_pred cc-cccccceEEecCCcEEEEE
Q 005240 84 CL-NAVFGSFVWVNNSTLLIFT 104 (706)
Q Consensus 84 ~~-~~~~~~~~wSpDg~~l~~~ 104 (706)
.. -.....++.|+||+++++.
T Consensus 91 ~~~~~~~~~~~ls~dgk~~~V~ 112 (342)
T PF06433_consen 91 AQVVPYKNMFALSADGKFLYVQ 112 (342)
T ss_dssp --BS--GGGEEE-TTSSEEEEE
T ss_pred heecccccceEEccCCcEEEEE
Confidence 10 0113477999999987764
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00046 Score=66.78 Aligned_cols=135 Identities=16% Similarity=0.214 Sum_probs=76.0
Q ss_pred ceEEEEcc-CCCceecCCC-------ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecC--CCeeE---E
Q 005240 157 AQLVLGSL-DGTAKDFGTP-------AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD--GKLVR---E 223 (706)
Q Consensus 157 ~~l~~~~l-~g~~~~lt~~-------~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~---~ 223 (706)
.-|.++|. +|+.+.-... ....++.|||||.+|+.... +.|.++|+. |..-. .
T Consensus 133 ~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGyk--------------rcirvFdt~RpGr~c~vy~t 198 (406)
T KOG2919|consen 133 QPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYK--------------RCIRVFDTSRPGRDCPVYTT 198 (406)
T ss_pred CceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeeccc--------------ceEEEeeccCCCCCCcchhh
Confidence 34777787 7755432111 24468899999999974432 367788774 22111 1
Q ss_pred cccCCCCCCCCcccCccCCC-CcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCc-eEEeeccccc
Q 005240 224 LCDLPPAEDIPVCYNSVREG-MRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP-EILHKLDLRF 301 (706)
Q Consensus 224 l~~~~~~~~~p~~~~~~~~g-~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~-~~l~~~~~~~ 301 (706)
++...... .| ...+++||-....+++-... .+--||..+ ++.+ ..|....+.+
T Consensus 199 ~~~~k~gq----------~giisc~a~sP~~~~~~a~gsY~----------q~~giy~~~-----~~~pl~llggh~gGv 253 (406)
T KOG2919|consen 199 VTKGKFGQ----------KGIISCFAFSPMDSKTLAVGSYG----------QRVGIYNDD-----GRRPLQLLGGHGGGV 253 (406)
T ss_pred hhcccccc----------cceeeeeeccCCCCcceeeeccc----------ceeeeEecC-----CCCceeeecccCCCe
Confidence 12111000 12 22578888776535543211 111355543 2334 3445668889
Q ss_pred ccceecCCCceEEEEeeccccceEEEEEcCCC
Q 005240 302 RSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (706)
Q Consensus 302 ~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~ 333 (706)
..+.|.+||..|+..+ ++. ..|..+|+..
T Consensus 254 ThL~~~edGn~lfsGa-Rk~--dkIl~WDiR~ 282 (406)
T KOG2919|consen 254 THLQWCEDGNKLFSGA-RKD--DKILCWDIRY 282 (406)
T ss_pred eeEEeccCcCeecccc-cCC--CeEEEEeehh
Confidence 9999999999988765 332 2466666654
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00016 Score=73.53 Aligned_cols=229 Identities=12% Similarity=0.098 Sum_probs=127.4
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCC-CceeecccCCCccccccccceEEecCCcEEEEEecCCCC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAET-GEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~-g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~ 110 (706)
.++.+.|.|-.-+|..+... + ..|+++++-. +...+...+. +..+++..||.+|..+...+-+
T Consensus 216 gvsai~~fp~~~hLlLS~gm-------D--~~vklW~vy~~~~~lrtf~gH----~k~Vrd~~~s~~g~~fLS~sfD--- 279 (503)
T KOG0282|consen 216 GVSAIQWFPKKGHLLLSGGM-------D--GLVKLWNVYDDRRCLRTFKGH----RKPVRDASFNNCGTSFLSASFD--- 279 (503)
T ss_pred ccchhhhccceeeEEEecCC-------C--ceEEEEEEecCcceehhhhcc----hhhhhhhhccccCCeeeeeecc---
Confidence 48899999954455444332 3 4555556543 4433332222 2238899999999987765421
Q ss_pred CCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CC-CceecCCCceEeeeeeCCCCcE
Q 005240 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTPAVYTAVEPSPDQKY 188 (706)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g-~~~~lt~~~~~~~~~~SpDG~~ 188 (706)
..|-++|+ +| ...++..+..+..+.+-||+..
T Consensus 280 ----------------------------------------------~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n 313 (503)
T KOG0282|consen 280 ----------------------------------------------RFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQN 313 (503)
T ss_pred ----------------------------------------------eeeeeeccccceEEEEEecCCCceeeecCCCCCc
Confidence 46777788 77 4455655556678899999988
Q ss_pred EEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCC
Q 005240 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDA 268 (706)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~ 268 (706)
+++..... ..|..||+..+++.+-.+.... .+..+.|-++|++ |++..+.+
T Consensus 314 ~fl~G~sd------------~ki~~wDiRs~kvvqeYd~hLg------------~i~~i~F~~~g~r---FissSDdk-- 364 (503)
T KOG0282|consen 314 IFLVGGSD------------KKIRQWDIRSGKVVQEYDRHLG------------AILDITFVDEGRR---FISSSDDK-- 364 (503)
T ss_pred EEEEecCC------------CcEEEEeccchHHHHHHHhhhh------------heeeeEEccCCce---EeeeccCc--
Confidence 87765542 5899999987775543333221 1336788888886 44333322
Q ss_pred ccccCccceeeeecCCCCCCCCceEE-e-ecccccccceecCCCceEEEEeeccccceEEEEEcCCCCC-CCceeeecCc
Q 005240 269 NVEVSPRDIIYTQPAEPAEGEKPEIL-H-KLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKD-VAPRVLFDRV 345 (706)
Q Consensus 269 ~~~~~~~~~l~~~d~~~~~~~~~~~l-~-~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~-~~~~~l~~~~ 345 (706)
.+.+|+- ...-+-.+ . ........+.-+|+++.++..+. .+.|++..+.-.- ...+..+++.
T Consensus 365 --------s~riWe~---~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~----dN~i~ifs~~~~~r~nkkK~feGh 429 (503)
T KOG0282|consen 365 --------SVRIWEN---RIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSM----DNYIAIFSTVPPFRLNKKKRFEGH 429 (503)
T ss_pred --------cEEEEEc---CCCccchhhcchhhccCcceecCCCCCeehhhcc----CceEEEEecccccccCHhhhhcce
Confidence 1334433 11111111 1 11223334567899998876542 2234444322210 0111112322
Q ss_pred ccccccCCC-CCceEeccCCCEEEEee
Q 005240 346 FENVYSDPG-SPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 346 ~~~~~~~~~-~~~~~~s~dg~~l~~~~ 371 (706)
.. +| ...+.+||||++|....
T Consensus 430 ~v-----aGys~~v~fSpDG~~l~SGd 451 (503)
T KOG0282|consen 430 SV-----AGYSCQVDFSPDGRTLCSGD 451 (503)
T ss_pred ec-----cCceeeEEEcCCCCeEEeec
Confidence 11 12 12466899999987765
|
|
| >PRK03204 haloalkane dehalogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=4.1e-05 Score=77.89 Aligned_cols=79 Identities=15% Similarity=0.150 Sum_probs=52.3
Q ss_pred HHCCeEEEEcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEE
Q 005240 552 LARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGI 631 (706)
Q Consensus 552 ~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v 631 (706)
...+|.|+.++.+ |+|.+...... ...+++....+..+.+. .+..++.++||||||.+++.++.++|++++++|
T Consensus 57 l~~~~~vi~~D~~---G~G~S~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~lvG~S~Gg~va~~~a~~~p~~v~~lv 130 (286)
T PRK03204 57 LRDRFRCVAPDYL---GFGLSERPSGF-GYQIDEHARVIGEFVDH--LGLDRYLSMGQDWGGPISMAVAVERADRVRGVV 130 (286)
T ss_pred HhCCcEEEEECCC---CCCCCCCCCcc-ccCHHHHHHHHHHHHHH--hCCCCEEEEEECccHHHHHHHHHhChhheeEEE
Confidence 3467999886665 55554322110 11133444444444443 234689999999999999999999999999998
Q ss_pred eccCC
Q 005240 632 ARSGS 636 (706)
Q Consensus 632 ~~~~~ 636 (706)
..++.
T Consensus 131 l~~~~ 135 (286)
T PRK03204 131 LGNTW 135 (286)
T ss_pred EECcc
Confidence 77653
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0011 Score=63.68 Aligned_cols=201 Identities=13% Similarity=0.191 Sum_probs=115.8
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCC----CceeecccCCCc----cc------cccccceEEecC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAET----GEAKPLFESPDI----CL------NAVFGSFVWVNN 97 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~----g~~~~lt~~~~~----~~------~~~~~~~~wSpD 97 (706)
.....+|||||..+|-.+. ...|-++|++- .+++++-.+... .+ -..+..+.|.|-
T Consensus 114 ~cR~aafs~DG~lvATGsa----------D~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr 183 (430)
T KOG0640|consen 114 PCRAAAFSPDGSLVATGSA----------DASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR 183 (430)
T ss_pred ceeeeeeCCCCcEEEccCC----------cceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch
Confidence 4778899999999987542 34566666551 122222111100 00 012567788888
Q ss_pred CcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCC-C----ceecC
Q 005240 98 STLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-T----AKDFG 172 (706)
Q Consensus 98 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g-~----~~~lt 172 (706)
...|+..+.+ ..|.++|... . .+.++
T Consensus 184 e~ILiS~srD-------------------------------------------------~tvKlFDfsK~saKrA~K~~q 214 (430)
T KOG0640|consen 184 ETILISGSRD-------------------------------------------------NTVKLFDFSKTSAKRAFKVFQ 214 (430)
T ss_pred hheEEeccCC-------------------------------------------------CeEEEEecccHHHHHHHHHhh
Confidence 8877755421 4566677733 2 22233
Q ss_pred CCceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecC
Q 005240 173 TPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRAD 252 (706)
Q Consensus 173 ~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spd 252 (706)
+...+.++.|.|.|.+|+..... ..+.+||+++-+--.-....... ..++..+.+|+.
T Consensus 215 d~~~vrsiSfHPsGefllvgTdH-------------p~~rlYdv~T~QcfvsanPd~qh---------t~ai~~V~Ys~t 272 (430)
T KOG0640|consen 215 DTEPVRSISFHPSGEFLLVGTDH-------------PTLRLYDVNTYQCFVSANPDDQH---------TGAITQVRYSST 272 (430)
T ss_pred ccceeeeEeecCCCceEEEecCC-------------CceeEEeccceeEeeecCccccc---------ccceeEEEecCC
Confidence 33788999999999999876543 36788888865432211111100 022447789999
Q ss_pred CCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEee--cccccccceecCCCceEEEEeeccccceEEEEEc
Q 005240 253 KPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK--LDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVC 330 (706)
Q Consensus 253 g~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~--~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d 330 (706)
|+ ||.....++ .|.+||- ..+..++.+.. ....+.+..|+.||++|+... .+....||.+.
T Consensus 273 ~~--lYvTaSkDG-----------~IklwDG--VS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG--~DS~vkLWEi~ 335 (430)
T KOG0640|consen 273 GS--LYVTASKDG-----------AIKLWDG--VSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSG--KDSTVKLWEIS 335 (430)
T ss_pred cc--EEEEeccCC-----------cEEeecc--ccHHHHHHHHhhcCCceeeeEEEccCCeEEeecC--Ccceeeeeeec
Confidence 98 776543332 2556653 13334444432 245678899999999888643 33445566654
|
|
| >KOG2624 consensus Triglyceride lipase-cholesterol esterase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.99 E-value=4.8e-05 Score=78.95 Aligned_cols=141 Identities=16% Similarity=0.080 Sum_probs=101.0
Q ss_pred CCceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEE
Q 005240 479 SLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAV 558 (706)
Q Consensus 479 ~~~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v 558 (706)
..+.|...+.+.||.-+..-.+ |..- ++.|+|++.||=-. ....|-... .....+-.|+.+||.|
T Consensus 45 gy~~E~h~V~T~DgYiL~lhRI-p~~~-----~~rp~Vll~HGLl~--------sS~~Wv~n~-p~~sLaf~LadaGYDV 109 (403)
T KOG2624|consen 45 GYPVEEHEVTTEDGYILTLHRI-PRGK-----KKRPVVLLQHGLLA--------SSSSWVLNG-PEQSLAFLLADAGYDV 109 (403)
T ss_pred CCceEEEEEEccCCeEEEEeee-cCCC-----CCCCcEEEeecccc--------ccccceecC-ccccHHHHHHHcCCce
Confidence 4688999999999975544444 4431 34799999999422 122232221 2234566788999999
Q ss_pred EEcCCCCcCCCCCC-----------CCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCC--
Q 005240 559 LAGPSIPIIGEGDK-----------LPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH-- 625 (706)
Q Consensus 559 ~~~~~~~~~g~g~~-----------~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~-- 625 (706)
-.+|.||. .|++. |....|-+-...|+-+.|+|+.+.- ..+++..+|||.|+......+...|+
T Consensus 110 WLgN~RGn-~ySr~h~~l~~~~~~~FW~FS~~Em~~yDLPA~IdyIL~~T--~~~kl~yvGHSQGtt~~fv~lS~~p~~~ 186 (403)
T KOG2624|consen 110 WLGNNRGN-TYSRKHKKLSPSSDKEFWDFSWHEMGTYDLPAMIDYILEKT--GQEKLHYVGHSQGTTTFFVMLSERPEYN 186 (403)
T ss_pred eeecCcCc-ccchhhcccCCcCCcceeecchhhhhhcCHHHHHHHHHHhc--cccceEEEEEEccchhheehhcccchhh
Confidence 99898874 33332 3333455556889999999999863 45899999999999999888888766
Q ss_pred -ceeEEEeccCCC
Q 005240 626 -LFCCGIARSGSY 637 (706)
Q Consensus 626 -~~~a~v~~~~~~ 637 (706)
+++..++.+|+.
T Consensus 187 ~kI~~~~aLAP~~ 199 (403)
T KOG2624|consen 187 KKIKSFIALAPAA 199 (403)
T ss_pred hhhheeeeecchh
Confidence 688999999875
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.002 Score=69.25 Aligned_cols=198 Identities=16% Similarity=0.146 Sum_probs=114.6
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCce-eecccCCCccccccccceEEecCCcEEEEEecCCCC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-KPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~-~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~ 110 (706)
.+....+|.|...|+.. .+..|-+++.++.+. +.++.. . +-...+-|.+++++...+
T Consensus 375 dVRsl~vS~d~~~~~Sg-----------a~~SikiWn~~t~kciRTi~~~-y------~l~~~Fvpgd~~Iv~G~k---- 432 (888)
T KOG0306|consen 375 DVRSLCVSSDSILLASG-----------AGESIKIWNRDTLKCIRTITCG-Y------ILASKFVPGDRYIVLGTK---- 432 (888)
T ss_pred heeEEEeecCceeeeec-----------CCCcEEEEEccCcceeEEeccc-c------EEEEEecCCCceEEEecc----
Confidence 67888999888777653 335566667776654 444322 1 334567788888776532
Q ss_pred CCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CC-CceecCCC-ceEeeeeeCCCCc
Q 005240 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTP-AVYTAVEPSPDQK 187 (706)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g-~~~~lt~~-~~~~~~~~SpDG~ 187 (706)
.+.|-++|+ .. -...+... +.+..++.+||++
T Consensus 433 ---------------------------------------------~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~ 467 (888)
T KOG0306|consen 433 ---------------------------------------------NGELQVFDLASASLVETIRAHDGAIWSISLSPDNK 467 (888)
T ss_pred ---------------------------------------------CCceEEEEeehhhhhhhhhccccceeeeeecCCCC
Confidence 256666777 33 33333334 6788999999999
Q ss_pred EEEEEeeccCcccccccccccceEEEEecC------CCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEE
Q 005240 188 YVLITSMHRPYSYKVPCARFSQKVQVWTTD------GKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVE 261 (706)
Q Consensus 188 ~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~------~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~ 261 (706)
..+..+.+. .+..|+.. |.+.+.| ........ .+ .+.+-.+.+||||+. |+..
T Consensus 468 g~vT~saDk-------------tVkfWdf~l~~~~~gt~~k~l-sl~~~rtL--el---~ddvL~v~~Spdgk~-LaVs- 526 (888)
T KOG0306|consen 468 GFVTGSADK-------------TVKFWDFKLVVSVPGTQKKVL-SLKHTRTL--EL---EDDVLCVSVSPDGKL-LAVS- 526 (888)
T ss_pred ceEEecCCc-------------EEEEEeEEEEeccCcccceee-eeccceEE--ec---cccEEEEEEcCCCcE-EEEE-
Confidence 987655442 34444432 2222211 11000000 00 022346799999996 5532
Q ss_pred eccCCCCccccCccceeeeecCCCCCCCC-ceEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCC
Q 005240 262 AQDRGDANVEVSPRDIIYTQPAEPAEGEK-PEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (706)
Q Consensus 262 ~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~ 333 (706)
-.+ ++-.+|.+|. -+ .-.|..+.-.+..+..|||++.|+..+.+ .+.++|-+|-..
T Consensus 527 LLd---------nTVkVyflDt-----lKFflsLYGHkLPV~smDIS~DSklivTgSAD--KnVKiWGLdFGD 583 (888)
T KOG0306|consen 527 LLD---------NTVKVYFLDT-----LKFFLSLYGHKLPVLSMDISPDSKLIVTGSAD--KNVKIWGLDFGD 583 (888)
T ss_pred ecc---------CeEEEEEecc-----eeeeeeecccccceeEEeccCCcCeEEeccCC--CceEEeccccch
Confidence 122 2224666553 12 12355667788899999999998876533 456777777543
|
|
| >KOG1838 consensus Alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00014 Score=74.38 Aligned_cols=143 Identities=12% Similarity=0.067 Sum_probs=89.8
Q ss_pred ceEEEEEEccCCeEEEEEEEecCCCCC-CCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEE
Q 005240 481 QKEMIKYQRKDGVPLTATLYLPPGYDQ-SKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 559 (706)
Q Consensus 481 ~~~~~~~~~~dg~~i~~~l~~P~~~~~-~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~ 559 (706)
..+..-++.+||-.+-..++.+++-.. .+.+..|+||++||-.. + +...+-..+.....+.||.++
T Consensus 92 ~y~Reii~~~DGG~~~lDW~~~~~~~~~~~~~~~P~vvilpGltg-----------~--S~~~YVr~lv~~a~~~G~r~V 158 (409)
T KOG1838|consen 92 EYTREIIKTSDGGTVTLDWVENPDSRCRTDDGTDPIVVILPGLTG-----------G--SHESYVRHLVHEAQRKGYRVV 158 (409)
T ss_pred cceeEEEEeCCCCEEEEeeccCcccccCCCCCCCcEEEEecCCCC-----------C--ChhHHHHHHHHHHHhCCcEEE
Confidence 344444555588788877776665211 11234699999999421 1 122111234455567999888
Q ss_pred EcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCC--ceeEEEeccCCC
Q 005240 560 AGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH--LFCCGIARSGSY 637 (706)
Q Consensus 560 ~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~--~~~a~v~~~~~~ 637 (706)
.-|.||-.|---.. ..-+-...-.|+..++++++++.. ..++.++|.||||.|....++...+ .+.|+++.+-.+
T Consensus 159 VfN~RG~~g~~LtT-pr~f~ag~t~Dl~~~v~~i~~~~P--~a~l~avG~S~Gg~iL~nYLGE~g~~~~l~~a~~v~~Pw 235 (409)
T KOG1838|consen 159 VFNHRGLGGSKLTT-PRLFTAGWTEDLREVVNHIKKRYP--QAPLFAVGFSMGGNILTNYLGEEGDNTPLIAAVAVCNPW 235 (409)
T ss_pred EECCCCCCCCccCC-CceeecCCHHHHHHHHHHHHHhCC--CCceEEEEecchHHHHHHHhhhccCCCCceeEEEEeccc
Confidence 76777643321111 111222336899999999998753 2489999999999999999987644 366777777666
Q ss_pred CC
Q 005240 638 NK 639 (706)
Q Consensus 638 d~ 639 (706)
|.
T Consensus 236 d~ 237 (409)
T KOG1838|consen 236 DL 237 (409)
T ss_pred hh
Confidence 63
|
|
| >PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00012 Score=73.38 Aligned_cols=123 Identities=20% Similarity=0.157 Sum_probs=79.4
Q ss_pred EEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEE--cCCCCcCC-CCC
Q 005240 495 LTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA--GPSIPIIG-EGD 571 (706)
Q Consensus 495 i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~--~~~~~~~g-~g~ 571 (706)
-...++.|...++.+ .|++|+..|.+- ..|.......+..|++.|++.+. .++.|.+- ..+
T Consensus 77 a~~~~~~P~~~~~~~---rp~~IhLagTGD-------------h~f~rR~~l~a~pLl~~gi~s~~le~Pyyg~RkP~~Q 140 (348)
T PF09752_consen 77 ARFQLLLPKRWDSPY---RPVCIHLAGTGD-------------HGFWRRRRLMARPLLKEGIASLILENPYYGQRKPKDQ 140 (348)
T ss_pred eEEEEEECCccccCC---CceEEEecCCCc-------------cchhhhhhhhhhHHHHcCcceEEEecccccccChhHh
Confidence 445577788753332 589998887531 23322223346677888986654 44433321 000
Q ss_pred C---CCc--h--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCC
Q 005240 572 K---LPN--D--RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 636 (706)
Q Consensus 572 ~---~~~--~--~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~ 636 (706)
. ... + ..+...+.+....+.|+.++++ .++||.|.||||+||.++++..|..+.++-..++.
T Consensus 141 ~~s~l~~VsDl~~~g~~~i~E~~~Ll~Wl~~~G~---~~~g~~G~SmGG~~A~laa~~~p~pv~~vp~ls~~ 209 (348)
T PF09752_consen 141 RRSSLRNVSDLFVMGRATILESRALLHWLEREGY---GPLGLTGISMGGHMAALAASNWPRPVALVPCLSWS 209 (348)
T ss_pred hcccccchhHHHHHHhHHHHHHHHHHHHHHhcCC---CceEEEEechhHhhHHhhhhcCCCceeEEEeeccc
Confidence 0 000 1 1234567888899999999976 59999999999999999999998876666555543
|
|
| >TIGR03230 lipo_lipase lipoprotein lipase | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00012 Score=77.28 Aligned_cols=79 Identities=9% Similarity=-0.056 Sum_probs=57.5
Q ss_pred CeEEEEcCCCCcCCCCCCCCc--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEe
Q 005240 555 RFAVLAGPSIPIIGEGDKLPN--DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIA 632 (706)
Q Consensus 555 G~~v~~~~~~~~~g~g~~~~~--~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~ 632 (706)
.|.|+..+-+ |+|..... .........++...+++|.++.-++.+++-++|||+||++|..++.+.|+++..++.
T Consensus 73 d~nVI~VDw~---g~g~s~y~~a~~~t~~vg~~la~lI~~L~~~~gl~l~~VhLIGHSLGAhIAg~ag~~~p~rV~rItg 149 (442)
T TIGR03230 73 SANVIVVDWL---SRAQQHYPTSAAYTKLVGKDVAKFVNWMQEEFNYPWDNVHLLGYSLGAHVAGIAGSLTKHKVNRITG 149 (442)
T ss_pred CCEEEEEECC---CcCCCCCccccccHHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECHHHHHHHHHHHhCCcceeEEEE
Confidence 5888775554 23333221 122345567788888888765335778999999999999999999999999999998
Q ss_pred ccCC
Q 005240 633 RSGS 636 (706)
Q Consensus 633 ~~~~ 636 (706)
..|.
T Consensus 150 LDPA 153 (442)
T TIGR03230 150 LDPA 153 (442)
T ss_pred EcCC
Confidence 8875
|
Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity. |
| >PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00037 Score=86.87 Aligned_cols=98 Identities=12% Similarity=0.064 Sum_probs=62.2
Q ss_pred ceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCCCCc----------hhhHHHH
Q 005240 513 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPN----------DRFVEQL 582 (706)
Q Consensus 513 ~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~----------~~~~~~~ 582 (706)
.|.||++||.+.. ...| ...+..| +.+|.|+.++.+ |+|.+... ....+..
T Consensus 1371 ~~~vVllHG~~~s-----------~~~w----~~~~~~L-~~~~rVi~~Dl~---G~G~S~~~~~~~~~~~~~~~si~~~ 1431 (1655)
T PLN02980 1371 GSVVLFLHGFLGT-----------GEDW----IPIMKAI-SGSARCISIDLP---GHGGSKIQNHAKETQTEPTLSVELV 1431 (1655)
T ss_pred CCeEEEECCCCCC-----------HHHH----HHHHHHH-hCCCEEEEEcCC---CCCCCCCccccccccccccCCHHHH
Confidence 3679999996321 0111 1223333 456888886654 45544221 1123444
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccC
Q 005240 583 VSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSG 635 (706)
Q Consensus 583 ~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~ 635 (706)
.+++...++.+ +.+++.++||||||.+++.++.++|+++++++..++
T Consensus 1432 a~~l~~ll~~l------~~~~v~LvGhSmGG~iAl~~A~~~P~~V~~lVlis~ 1478 (1655)
T PLN02980 1432 ADLLYKLIEHI------TPGKVTLVGYSMGARIALYMALRFSDKIEGAVIISG 1478 (1655)
T ss_pred HHHHHHHHHHh------CCCCEEEEEECHHHHHHHHHHHhChHhhCEEEEECC
Confidence 55544444432 346899999999999999999999999999988765
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00024 Score=68.33 Aligned_cols=114 Identities=13% Similarity=0.223 Sum_probs=70.9
Q ss_pred ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCe-eEEcccCCCCCCCCcccCccCCCCcceeeecCC
Q 005240 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL-VRELCDLPPAEDIPVCYNSVREGMRSISWRADK 253 (706)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg 253 (706)
..+.++.||.|..-|+-.+.+ ..|.+|.+.++. .|+..... ..|+..++||.|+
T Consensus 264 ~aVlci~FSRDsEMlAsGsqD-------------GkIKvWri~tG~ClRrFdrAH------------tkGvt~l~FSrD~ 318 (508)
T KOG0275|consen 264 DAVLCISFSRDSEMLASGSQD-------------GKIKVWRIETGQCLRRFDRAH------------TKGVTCLSFSRDN 318 (508)
T ss_pred cceEEEeecccHHHhhccCcC-------------CcEEEEEEecchHHHHhhhhh------------ccCeeEEEEccCc
Confidence 356789999999888755443 378889888553 44432211 1456688999999
Q ss_pred CceEEEEEeccCCCCccccCccceeeeecCCCCCCCC-ceEEeecccccccceecCCCceEEEEeeccccceEEEEEcCC
Q 005240 254 PSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEK-PEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPG 332 (706)
Q Consensus 254 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~ 332 (706)
++ |.-. +.+. .+.+.-+ .+|+ .+....+...+....|++||..|+..+.+ +..++| +..
T Consensus 319 Sq-iLS~----sfD~--------tvRiHGl---KSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsD--gtvkvW--~~K 378 (508)
T KOG0275|consen 319 SQ-ILSA----SFDQ--------TVRIHGL---KSGKCLKEFRGHSSYVNEATFTDDGHHIISASSD--GTVKVW--HGK 378 (508)
T ss_pred ch-hhcc----cccc--------eEEEecc---ccchhHHHhcCccccccceEEcCCCCeEEEecCC--ccEEEe--cCc
Confidence 87 4311 1111 1233222 4443 45566677888999999999999987633 344444 444
Q ss_pred C
Q 005240 333 S 333 (706)
Q Consensus 333 ~ 333 (706)
+
T Consensus 379 t 379 (508)
T KOG0275|consen 379 T 379 (508)
T ss_pred c
Confidence 4
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0014 Score=67.47 Aligned_cols=222 Identities=13% Similarity=0.105 Sum_probs=122.8
Q ss_pred ccceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCC--eEEEEeeccccccccCCceeEEEEEcCCCceeecccCC
Q 005240 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGK--RIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESP 81 (706)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~--~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~ 81 (706)
-.+|+|+++...-..+....++ +. .+....|||-|. -|||-.. +..+......||.++ .+.....-+...
T Consensus 151 ~~sl~i~e~t~n~~~~p~~~lr--~~--gi~dFsisP~~n~~~la~~tP---Ek~~kpa~~~i~sIp-~~s~l~tk~lfk 222 (561)
T COG5354 151 GSSLYIHEITDNIEEHPFKNLR--PV--GILDFSISPEGNHDELAYWTP---EKLNKPAMVRILSIP-KNSVLVTKNLFK 222 (561)
T ss_pred cCeEEEEecCCccccCchhhcc--cc--ceeeEEecCCCCCceEEEEcc---ccCCCCcEEEEEEcc-CCCeeeeeeeEe
Confidence 4678999983211112222222 23 378899999644 4666432 233345556666665 222222222222
Q ss_pred CccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEE
Q 005240 82 DICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (706)
Q Consensus 82 ~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~ 161 (706)
.. --.+.|.+.|++|.+......... -.+.+...||+
T Consensus 223 ~~-----~~qLkW~~~g~~ll~l~~t~~ksn--------------------------------------KsyfgesnLyl 259 (561)
T COG5354 223 VS-----GVQLKWQVLGKYLLVLVMTHTKSN--------------------------------------KSYFGESNLYL 259 (561)
T ss_pred ec-----ccEEEEecCCceEEEEEEEeeecc--------------------------------------cceeccceEEE
Confidence 11 126789999999888754321100 00124578999
Q ss_pred EccCCCceecC-CC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCc
Q 005240 162 GSLDGTAKDFG-TP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNS 239 (706)
Q Consensus 162 ~~l~g~~~~lt-~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~ 239 (706)
+++++.--++. .. +.+..++|+|++++.+..+...+ ..+-++++.+.-.--+... .
T Consensus 260 ~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~p-----------a~~s~~~lr~Nl~~~~Pe~--~--------- 317 (561)
T COG5354 260 LRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMP-----------ASVSVFDLRGNLRFYFPEQ--K--------- 317 (561)
T ss_pred EeecccccceeccccccceeeeecccCCceeEEecccc-----------cceeecccccceEEecCCc--c---------
Confidence 99976222222 32 68899999999999998886553 4677778777622222111 1
Q ss_pred cCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeeccc-ccccceecCCCceEEEE
Q 005240 240 VREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDL-RFRSVSWCDDSLALVNE 316 (706)
Q Consensus 240 ~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~-~~~~~~wspDg~~l~~~ 316 (706)
...+.|||.++. +++....+. .+.+-+++. . +....+....+ ......|||||..+...
T Consensus 318 ----rNT~~fsp~~r~-il~agF~nl---------~gni~i~~~---~-~rf~~~~~~~~~n~s~~~wspd~qF~~~~ 377 (561)
T COG5354 318 ----RNTIFFSPHERY-ILFAGFDNL---------QGNIEIFDP---A-GRFKVAGAFNGLNTSYCDWSPDGQFYDTD 377 (561)
T ss_pred ----cccccccCcccE-EEEecCCcc---------ccceEEecc---C-CceEEEEEeecCCceEeeccCCceEEEec
Confidence 115679999987 554321110 112445555 2 34444443333 34455799999977653
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0035 Score=74.72 Aligned_cols=128 Identities=12% Similarity=0.083 Sum_probs=71.5
Q ss_pred eEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCC--CCC-Ccc------cCccCCCCcc
Q 005240 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPA--EDI-PVC------YNSVREGMRS 246 (706)
Q Consensus 176 ~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~--~~~-p~~------~~~~~~g~~~ 246 (706)
....++++|||++|++.... ...|.+||++++..+.+...... ... ... ....-..+..
T Consensus 741 ~P~GIavspdG~~LYVADs~------------n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~G 808 (1057)
T PLN02919 741 QPSGISLSPDLKELYIADSE------------SSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLG 808 (1057)
T ss_pred CccEEEEeCCCCEEEEEECC------------CCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCce
Confidence 45578999999998776544 25899999986655443321100 000 000 0000012447
Q ss_pred eeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecc--------------cccccceecCCCce
Q 005240 247 ISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLD--------------LRFRSVSWCDDSLA 312 (706)
Q Consensus 247 ~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~--------------~~~~~~~wspDg~~ 312 (706)
+++++||. ||+. +.. +..|.++|. +++....+.... .....+++++||+
T Consensus 809 vavd~dG~--LYVA-Ds~----------N~rIrviD~---~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~- 871 (1057)
T PLN02919 809 VLCAKDGQ--IYVA-DSY----------NHKIKKLDP---ATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGR- 871 (1057)
T ss_pred eeEeCCCc--EEEE-ECC----------CCEEEEEEC---CCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCC-
Confidence 78899986 5543 221 234777777 555555443211 1234568899997
Q ss_pred EEEEeeccccceEEEEEcCCCCC
Q 005240 313 LVNETWYKTSQTRTWLVCPGSKD 335 (706)
Q Consensus 313 l~~~~~~~~~~~~l~~~d~~~~~ 335 (706)
|+++. ..+..|.++|+++++
T Consensus 872 lyVaD---t~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 872 LFVAD---TNNSLIRYLDLNKGE 891 (1057)
T ss_pred EEEEE---CCCCEEEEEECCCCc
Confidence 44332 245578899988853
|
|
| >TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171 | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00075 Score=75.39 Aligned_cols=128 Identities=11% Similarity=-0.010 Sum_probs=79.1
Q ss_pred CeEEEEeeccccccccCCceeEEEEEcCCCceeec-ccCCCccccccccceEEecCCcEEEE-EecCCCCCCCCCCCCCC
Q 005240 43 KRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPL-FESPDICLNAVFGSFVWVNNSTLLIF-TIPSSRRDPPKKTMVPL 120 (706)
Q Consensus 43 ~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l-t~~~~~~~~~~~~~~~wSpDg~~l~~-~~~~~~~~~~~~~~~~~ 120 (706)
.+|||+.. ...+|.++|.++...+.+ +..... +-+|.|||||+.|+| ++.+.-.
T Consensus 319 tkiAfv~~---------~~~~L~~~D~dG~n~~~ve~~~~~~-----i~sP~~SPDG~~vAY~ts~e~~~---------- 374 (912)
T TIGR02171 319 AKLAFRND---------VTGNLAYIDYTKGASRAVEIEDTIS-----VYHPDISPDGKKVAFCTGIEGLP---------- 374 (912)
T ss_pred eeEEEEEc---------CCCeEEEEecCCCCceEEEecCCCc-----eecCcCCCCCCEEEEEEeecCCC----------
Confidence 47888763 123999999999888888 655543 668999999999999 5432100
Q ss_pred CCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc--CC-CceecCCC-ceEeeeeeCCCCcE-EEEEeec
Q 005240 121 GPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL--DG-TAKDFGTP-AVYTAVEPSPDQKY-VLITSMH 195 (706)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l--~g-~~~~lt~~-~~~~~~~~SpDG~~-i~~~~~~ 195 (706)
+...||+.+| +| .+.+|.-. ..+....+.+.|.. |+|++..
T Consensus 375 ----------------------------------g~s~vYv~~L~t~~~~~vkl~ve~aaiprwrv~e~gdt~ivyv~~a 420 (912)
T TIGR02171 375 ----------------------------------GKSSVYVRNLNASGSGLVKLPVENAAIPRWRVLENGDTVIVYVSDA 420 (912)
T ss_pred ----------------------------------CCceEEEEehhccCCCceEeecccccccceEecCCCCeEEEEEcCC
Confidence 1257999999 34 55666544 56677778888875 5667665
Q ss_pred cCcccccccccccceEEEEecC---CCeeEEcccCCCC
Q 005240 196 RPYSYKVPCARFSQKVQVWTTD---GKLVRELCDLPPA 230 (706)
Q Consensus 196 ~~~~~~~~~~~~~~~i~~~~~~---~~~~~~l~~~~~~ 230 (706)
+..+...... ...-|.+... =+++++|.++...
T Consensus 421 ~nn~d~~~~~--~~stw~v~f~~gkfg~p~kl~dga~h 456 (912)
T TIGR02171 421 SNNKDDATFA--AYSTWQVPFANGKFGTPKKLFDGAYH 456 (912)
T ss_pred CCCcchhhhh--hcceEEEEecCCCCCCchhhhccccc
Confidence 4332111111 1223333333 2346677766543
|
This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown. |
| >COG1770 PtrB Protease II [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.013 Score=63.35 Aligned_cols=121 Identities=21% Similarity=0.307 Sum_probs=81.4
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~ 111 (706)
.......|||++.+||+.+. .++..-.|.+.|+++|+...-.-.. ....+.|.+|++.|+|+.......
T Consensus 130 ~Lg~~~~s~D~~~la~s~D~-----~G~e~y~lr~kdL~tg~~~~d~i~~------~~~~~~Wa~d~~~lfYt~~d~~~r 198 (682)
T COG1770 130 SLGAASISPDHNLLAYSVDV-----LGDEQYTLRFKDLATGEELPDEITN------TSGSFAWAADGKTLFYTRLDENHR 198 (682)
T ss_pred eeeeeeeCCCCceEEEEEec-----ccccEEEEEEEecccccccchhhcc------cccceEEecCCCeEEEEEEcCCCC
Confidence 55678899999999999852 2366778999999998755432111 145789999999999986532221
Q ss_pred CCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCC---CceecCCC---ceEeeeeeCCC
Q 005240 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG---TAKDFGTP---AVYTAVEPSPD 185 (706)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g---~~~~lt~~---~~~~~~~~SpD 185 (706)
-..||...+.+ +-+.+.+. .....+.-|..
T Consensus 199 --------------------------------------------p~kv~~h~~gt~~~~d~lvyeE~d~~f~~~v~~s~s 234 (682)
T COG1770 199 --------------------------------------------PDKVWRHRLGTPGSSDELVYEEKDDRFFLSVGRSRS 234 (682)
T ss_pred --------------------------------------------cceEEEEecCCCCCcceEEEEcCCCcEEEEeeeccC
Confidence 14677777743 33334332 34556667778
Q ss_pred CcEEEEEeeccCcccccccccccceEEEEecC
Q 005240 186 QKYVLITSMHRPYSYKVPCARFSQKVQVWTTD 217 (706)
Q Consensus 186 G~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 217 (706)
.++|++...... ++++++.+.+
T Consensus 235 ~~yi~i~~~~~~----------tsE~~ll~a~ 256 (682)
T COG1770 235 EAYIVISLGSHI----------TSEVRLLDAD 256 (682)
T ss_pred CceEEEEcCCCc----------ceeEEEEecC
Confidence 888877664322 4688888887
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0036 Score=63.32 Aligned_cols=49 Identities=16% Similarity=0.268 Sum_probs=37.0
Q ss_pred ceEEEEccCC-CceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecC
Q 005240 157 AQLVLGSLDG-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD 217 (706)
Q Consensus 157 ~~l~~~~l~g-~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 217 (706)
+.||+++..| ..+.+... .....++|||||+.++++.+.. ..|+.++++
T Consensus 143 G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~------------~~i~r~~~d 193 (307)
T COG3386 143 GSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPA------------NRIHRYDLD 193 (307)
T ss_pred ceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCC------------CeEEEEecC
Confidence 6899999867 44555543 5566899999999998877653 578888776
|
|
| >TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase | Back alignment and domain information |
|---|
Probab=97.91 E-value=5.3e-05 Score=79.62 Aligned_cols=82 Identities=16% Similarity=0.150 Sum_probs=55.3
Q ss_pred HHHHCCeEEEEcCCCCc-CCC-CCC--------CCc---hhhHHHHHHHHHHHHHHHHHcCCCCCCc-EEEEEechHHHH
Q 005240 550 IFLARRFAVLAGPSIPI-IGE-GDK--------LPN---DRFVEQLVSSAEAAVEEVVRRGVADPSR-IAVGGHSYGAFM 615 (706)
Q Consensus 550 ~l~~~G~~v~~~~~~~~-~g~-g~~--------~~~---~~~~~~~~~D~~~~~~~l~~~~~id~~~-i~i~G~S~GG~~ 615 (706)
.|...+|.|++++.+|. .|. +.+ +.. ....++..+|+...++.+ + -.+ +.++||||||.+
T Consensus 67 ~l~~~~~~vi~~D~~G~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~---~~~~~~l~G~S~Gg~i 140 (351)
T TIGR01392 67 AIDTDRYFVVCSNVLGGCYGSTGPSSINPGGRPYGSDFPLITIRDDVKAQKLLLDHL---G---IEQIAAVVGGSMGGMQ 140 (351)
T ss_pred CcCCCceEEEEecCCCCCCCCCCCCCCCCCCCcCCCCCCCCcHHHHHHHHHHHHHHc---C---CCCceEEEEECHHHHH
Confidence 44568899999777762 121 110 000 122445555555555433 2 256 999999999999
Q ss_pred HHHHHHhCCCceeEEEeccCCC
Q 005240 616 TAHLLAHAPHLFCCGIARSGSY 637 (706)
Q Consensus 616 a~~~~~~~p~~~~a~v~~~~~~ 637 (706)
++.++.++|++++++|+.++..
T Consensus 141 a~~~a~~~p~~v~~lvl~~~~~ 162 (351)
T TIGR01392 141 ALEWAIDYPERVRAIVVLATSA 162 (351)
T ss_pred HHHHHHHChHhhheEEEEccCC
Confidence 9999999999999999988753
|
This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes. |
| >KOG1454 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00038 Score=71.48 Aligned_cols=44 Identities=18% Similarity=0.144 Sum_probs=35.3
Q ss_pred HHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHH
Q 005240 650 RFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKY 694 (706)
Q Consensus 650 ~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~~~~ 694 (706)
+....+++..-.+++.+.++++|...- .....+...|..|+.++
T Consensus 281 ~~~~~~~~~~pn~~~~~I~~~gH~~h~-e~Pe~~~~~i~~Fi~~~ 324 (326)
T KOG1454|consen 281 ELAEELKKKLPNAELVEIPGAGHLPHL-ERPEEVAALLRSFIARL 324 (326)
T ss_pred HHHHHHHhhCCCceEEEeCCCCccccc-CCHHHHHHHHHHHHHHh
Confidence 666777776667899999999998764 56778888999998875
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00098 Score=72.57 Aligned_cols=101 Identities=15% Similarity=0.183 Sum_probs=61.3
Q ss_pred ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCC
Q 005240 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (706)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~ 254 (706)
+++..+.||.++ +|+-.+.+ ..+.+|.+..++--.+..+. +-+..++|.|-..
T Consensus 370 ~DILDlSWSKn~-fLLSSSMD-------------KTVRLWh~~~~~CL~~F~Hn-------------dfVTcVaFnPvDD 422 (712)
T KOG0283|consen 370 ADILDLSWSKNN-FLLSSSMD-------------KTVRLWHPGRKECLKVFSHN-------------DFVTCVAFNPVDD 422 (712)
T ss_pred hhheecccccCC-eeEecccc-------------ccEEeecCCCcceeeEEecC-------------CeeEEEEecccCC
Confidence 688899999886 55444444 37899999866544444443 1234667887554
Q ss_pred ceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEe
Q 005240 255 STLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNET 317 (706)
Q Consensus 255 ~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~ 317 (706)
. ||++-.- ...+.+|++ ...++..-+.....+..+.++|||+..++.+
T Consensus 423 r--yFiSGSL----------D~KvRiWsI---~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt 470 (712)
T KOG0283|consen 423 R--YFISGSL----------DGKVRLWSI---SDKKVVDWNDLRDLITAVCYSPDGKGAVIGT 470 (712)
T ss_pred C--cEeeccc----------ccceEEeec---CcCeeEeehhhhhhheeEEeccCCceEEEEE
Confidence 3 4553211 123556666 2122221223467788999999999988765
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0007 Score=67.54 Aligned_cols=130 Identities=20% Similarity=0.279 Sum_probs=77.5
Q ss_pred ceeEeecCCCCCCC---CeeeeecCCCCC-cccceeeCCCCCeEEEEeeccccccccCCceeEEEEE------cCC----
Q 005240 6 GIGIHRLLPDDSLG---PEKEVHGYPDGA-KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIAD------AET---- 71 (706)
Q Consensus 6 ~~~~~~~~~~~~~g---~~~~i~~~~~~~-~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d------~~~---- 71 (706)
.|.|..+..+..++ +..-+..|..+. .+..++|||+|..||-..+ ++..-||... .++
T Consensus 37 ~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D--------~g~v~lWk~~~~~~~~~d~e~~~ 108 (434)
T KOG1009|consen 37 DIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGD--------GGEVFLWKQGDVRIFDADTEADL 108 (434)
T ss_pred ceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCC--------CceEEEEEecCcCCccccchhhh
Confidence 45555555544444 333333344332 5778899999999988643 3334445433 122
Q ss_pred -Cce---eecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchh
Q 005240 72 -GEA---KPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYD 147 (706)
Q Consensus 72 -g~~---~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 147 (706)
.+. +++..+.. ..+-.+.|+||+..+++.+-+
T Consensus 109 ~ke~w~v~k~lr~h~----~diydL~Ws~d~~~l~s~s~d---------------------------------------- 144 (434)
T KOG1009|consen 109 NKEKWVVKKVLRGHR----DDIYDLAWSPDSNFLVSGSVD---------------------------------------- 144 (434)
T ss_pred CccceEEEEEecccc----cchhhhhccCCCceeeeeecc----------------------------------------
Confidence 111 11111111 125578999999988876421
Q ss_pred hhhhhhcccceEEEEcc-CCCcee-cCCC-ceEeeeeeCCCCcEEEEEeecc
Q 005240 148 ESLFDYYTTAQLVLGSL-DGTAKD-FGTP-AVYTAVEPSPDQKYVLITSMHR 196 (706)
Q Consensus 148 ~~~~~~~~~~~l~~~~l-~g~~~~-lt~~-~~~~~~~~SpDG~~i~~~~~~~ 196 (706)
..++.+|+ .|+... +.+. .++..++|.|-+++|+-.+..+
T Consensus 145 ---------ns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr 187 (434)
T KOG1009|consen 145 ---------NSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDR 187 (434)
T ss_pred ---------ceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCc
Confidence 56777788 775444 4444 6788999999999998766554
|
|
| >PLN03084 alpha/beta hydrolase fold protein; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00013 Score=76.67 Aligned_cols=99 Identities=12% Similarity=0.106 Sum_probs=67.2
Q ss_pred eEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCCCCch------hhHHHHHHHHH
Q 005240 514 PCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPND------RFVEQLVSSAE 587 (706)
Q Consensus 514 p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~------~~~~~~~~D~~ 587 (706)
|.||++||.+.. ...| ...+..| +.+|.|++++.+ |+|.+.... ...+...+|+.
T Consensus 128 ~~ivllHG~~~~-----------~~~w----~~~~~~L-~~~~~Via~Dlp---G~G~S~~p~~~~~~~ys~~~~a~~l~ 188 (383)
T PLN03084 128 PPVLLIHGFPSQ-----------AYSY----RKVLPVL-SKNYHAIAFDWL---GFGFSDKPQPGYGFNYTLDEYVSSLE 188 (383)
T ss_pred CeEEEECCCCCC-----------HHHH----HHHHHHH-hcCCEEEEECCC---CCCCCCCCcccccccCCHHHHHHHHH
Confidence 678999996421 0111 1223334 468999986554 555543321 23455566666
Q ss_pred HHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCC
Q 005240 588 AAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSY 637 (706)
Q Consensus 588 ~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~ 637 (706)
..++.+ ..+++.++|+|+||.+++.++.++|++++.+|..++..
T Consensus 189 ~~i~~l------~~~~~~LvG~s~GG~ia~~~a~~~P~~v~~lILi~~~~ 232 (383)
T PLN03084 189 SLIDEL------KSDKVSLVVQGYFSPPVVKYASAHPDKIKKLILLNPPL 232 (383)
T ss_pred HHHHHh------CCCCceEEEECHHHHHHHHHHHhChHhhcEEEEECCCC
Confidence 666554 23579999999999999999999999999999999764
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.01 Score=69.56 Aligned_cols=84 Identities=15% Similarity=0.169 Sum_probs=50.4
Q ss_pred ceEEEEccCCCceecCCC--ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCC
Q 005240 157 AQLVLGSLDGTAKDFGTP--AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIP 234 (706)
Q Consensus 157 ~~l~~~~l~g~~~~lt~~--~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p 234 (706)
..+-+++-+|+..-..+. +-...++|.|.|..|+-+.... + ..+|..+.-+|-......-......
T Consensus 237 R~iRVy~ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~-~---------~~~VvFfErNGLrhgeF~l~~~~~~-- 304 (928)
T PF04762_consen 237 RVIRVYSREGELQSTSEPVDGLEGALSWRPSGNLIASSQRLP-D---------RHDVVFFERNGLRHGEFTLRFDPEE-- 304 (928)
T ss_pred eEEEEECCCceEEeccccCCCccCCccCCCCCCEEEEEEEcC-C---------CcEEEEEecCCcEeeeEecCCCCCC--
Confidence 345555666765555555 4456899999999999777532 2 2467777777654433221110000
Q ss_pred cccCccCCCCcceeeecCCCceEEEE
Q 005240 235 VCYNSVREGMRSISWRADKPSTLYWV 260 (706)
Q Consensus 235 ~~~~~~~~g~~~~~~spdg~~~l~~~ 260 (706)
..+..+.|++|+.- |+..
T Consensus 305 -------~~v~~l~Wn~ds~i-LAv~ 322 (928)
T PF04762_consen 305 -------EKVIELAWNSDSEI-LAVW 322 (928)
T ss_pred -------ceeeEEEECCCCCE-EEEE
Confidence 12458899999986 5543
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00019 Score=73.77 Aligned_cols=165 Identities=14% Similarity=0.273 Sum_probs=99.3
Q ss_pred ccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCC
Q 005240 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDP 112 (706)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~ 112 (706)
+...+|||||.-|..+.. +|...+|.. .|.-...+...... +...+|.|++..++|..
T Consensus 107 ~~~gRW~~dGtgLlt~GE--------DG~iKiWSr--sGMLRStl~Q~~~~-----v~c~~W~p~S~~vl~c~------- 164 (737)
T KOG1524|consen 107 ISSGRWSPDGAGLLTAGE--------DGVIKIWSR--SGMLRSTVVQNEES-----IRCARWAPNSNSIVFCQ------- 164 (737)
T ss_pred hhhcccCCCCceeeeecC--------CceEEEEec--cchHHHHHhhcCce-----eEEEEECCCCCceEEec-------
Confidence 456789999999977532 555666643 23332334444443 77899999998887762
Q ss_pred CCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCC--CceecCCC-ceEeeeeeCCCCcEE
Q 005240 113 PKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG--TAKDFGTP-AVYTAVEPSPDQKYV 189 (706)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g--~~~~lt~~-~~~~~~~~SpDG~~i 189 (706)
.++++.-+|.- ++-+.-.. +-+-.+.|+|....|
T Consensus 165 -------------------------------------------g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI 201 (737)
T KOG1524|consen 165 -------------------------------------------GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNII 201 (737)
T ss_pred -------------------------------------------CCeEEEeecccccceeEEeccCcEEEEeecCccccce
Confidence 15677666633 44444444 678899999999887
Q ss_pred EEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCc
Q 005240 190 LITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDAN 269 (706)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~ 269 (706)
+-.. . .....+||..|... ..... +..| +..++|.||. +|.+.
T Consensus 202 ~sgG-E------------D~kfKvWD~~G~~L---f~S~~-~ey~---------ITSva~npd~---~~~v~-------- 244 (737)
T KOG1524|consen 202 ASGG-E------------DFRFKIWDAQGANL---FTSAA-EEYA---------ITSVAFNPEK---DYLLW-------- 244 (737)
T ss_pred eecC-C------------ceeEEeecccCccc---ccCCh-hccc---------eeeeeecccc---ceeee--------
Confidence 6322 1 24567888776542 22211 1112 3477999993 33221
Q ss_pred cccCccceeeeecCCCCCCCCceEEe-ecccccccceecCCCceEEEEe
Q 005240 270 VEVSPRDIIYTQPAEPAEGEKPEILH-KLDLRFRSVSWCDDSLALVNET 317 (706)
Q Consensus 270 ~~~~~~~~l~~~d~~~~~~~~~~~l~-~~~~~~~~~~wspDg~~l~~~~ 317 (706)
..+. -++. ...+.+..++||+||.+++...
T Consensus 245 ----------S~nt--------~R~~~p~~GSifnlsWS~DGTQ~a~gt 275 (737)
T KOG1524|consen 245 ----------SYNT--------ARFSSPRVGSIFNLSWSADGTQATCGT 275 (737)
T ss_pred ----------eeee--------eeecCCCccceEEEEEcCCCceeeccc
Confidence 1111 1122 2356788899999999988754
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0014 Score=70.23 Aligned_cols=193 Identities=16% Similarity=0.153 Sum_probs=116.9
Q ss_pred ceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCCCC
Q 005240 35 FVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPK 114 (706)
Q Consensus 35 ~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~ 114 (706)
.++||++|+.|+-.. ...|-..|+++++.. +...... -...+..+..+||+++|+.....
T Consensus 24 ~~~~s~nG~~L~t~~-----------~d~Vi~idv~t~~~~-l~s~~~e-d~d~ita~~l~~d~~~L~~a~rs------- 83 (775)
T KOG0319|consen 24 PVAWSSNGQHLYTAC-----------GDRVIIIDVATGSIA-LPSGSNE-DEDEITALALTPDEEVLVTASRS------- 83 (775)
T ss_pred ceeECCCCCEEEEec-----------CceEEEEEccCCcee-cccCCcc-chhhhheeeecCCccEEEEeecc-------
Confidence 489999999997754 356888899998874 3222211 12235688999999988876421
Q ss_pred CCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCCcee-cCC-C-ceEeeeeeCCCCcEEE
Q 005240 115 KTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKD-FGT-P-AVYTAVEPSPDQKYVL 190 (706)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~~~-lt~-~-~~~~~~~~SpDG~~i~ 190 (706)
..|-++++ +|+..+ +-. + ..+-.++++|.|..++
T Consensus 84 ------------------------------------------~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlA 121 (775)
T KOG0319|consen 84 ------------------------------------------QLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLA 121 (775)
T ss_pred ------------------------------------------ceEEEEEcccchHhHhHhhccCCCeEEEEEcCCCceEE
Confidence 33445555 453322 221 2 5677888999994443
Q ss_pred EEeeccCcccccccccccceEEEEecCCCeeEEcccC-CCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCc
Q 005240 191 ITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDL-PPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDAN 269 (706)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~-~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~ 269 (706)
+... ...+.+||+.++....-..+ ++. +..+.|.|+-...|.+...
T Consensus 122 -tgga------------D~~v~VWdi~~~~~th~fkG~gGv-------------Vssl~F~~~~~~~lL~sg~------- 168 (775)
T KOG0319|consen 122 -TGGA------------DGRVKVWDIKNGYCTHSFKGHGGV-------------VSSLLFHPHWNRWLLASGA------- 168 (775)
T ss_pred -eccc------------cceEEEEEeeCCEEEEEecCCCce-------------EEEEEeCCccchhheeecC-------
Confidence 3222 24799999997765543333 211 3356777776553333211
Q ss_pred cccCccceeeeecCCCCCCCCc--eEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCC
Q 005240 270 VEVSPRDIIYTQPAEPAEGEKP--EILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (706)
Q Consensus 270 ~~~~~~~~l~~~d~~~~~~~~~--~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~ 333 (706)
....+++||. ..+.. ..+..+...+.++.+++|+..+++... ...++++|+.+
T Consensus 169 ----~D~~v~vwnl---~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~R----Dkvi~vwd~~~ 223 (775)
T KOG0319|consen 169 ----TDGTVRVWNL---NDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGR----DKVIIVWDLVQ 223 (775)
T ss_pred ----CCceEEEEEc---ccCchHHHHHHhhhhheeeeeeccCCceEEEecc----CcEEEEeehhh
Confidence 1235778887 32222 233456778889999999998887652 23466667654
|
|
| >PRK07581 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=97.87 E-value=5e-05 Score=79.45 Aligned_cols=82 Identities=17% Similarity=0.237 Sum_probs=53.3
Q ss_pred HHHHCCeEEEEcCCCCcCCCCCCCCchh----h-HH-----HHHHHHHHHHHHHHHcCCCCCCcE-EEEEechHHHHHHH
Q 005240 550 IFLARRFAVLAGPSIPIIGEGDKLPNDR----F-VE-----QLVSSAEAAVEEVVRRGVADPSRI-AVGGHSYGAFMTAH 618 (706)
Q Consensus 550 ~l~~~G~~v~~~~~~~~~g~g~~~~~~~----~-~~-----~~~~D~~~~~~~l~~~~~id~~~i-~i~G~S~GG~~a~~ 618 (706)
.|...+|.|++++.+ |+|.+..... + .+ ...+|+.+....+.+. ..-+++ .|.|+||||++++.
T Consensus 66 ~l~~~~~~vi~~D~~---G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--lgi~~~~~lvG~S~GG~va~~ 140 (339)
T PRK07581 66 ALDPEKYFIIIPNMF---GNGLSSSPSNTPAPFNAARFPHVTIYDNVRAQHRLLTEK--FGIERLALVVGWSMGAQQTYH 140 (339)
T ss_pred ccCcCceEEEEecCC---CCCCCCCCCCCCCCCCCCCCCceeHHHHHHHHHHHHHHH--hCCCceEEEEEeCHHHHHHHH
Confidence 344578999996665 4555432210 0 01 1234444433434432 123674 78999999999999
Q ss_pred HHHhCCCceeEEEeccCC
Q 005240 619 LLAHAPHLFCCGIARSGS 636 (706)
Q Consensus 619 ~~~~~p~~~~a~v~~~~~ 636 (706)
++.++|++++.+|..++.
T Consensus 141 ~a~~~P~~V~~Lvli~~~ 158 (339)
T PRK07581 141 WAVRYPDMVERAAPIAGT 158 (339)
T ss_pred HHHHCHHHHhhheeeecC
Confidence 999999999999988654
|
|
| >KOG1516 consensus Carboxylesterase and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.83 E-value=2.8e-05 Score=86.98 Aligned_cols=134 Identities=20% Similarity=0.222 Sum_probs=84.4
Q ss_pred ccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCC-CcC
Q 005240 489 RKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSI-PII 567 (706)
Q Consensus 489 ~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~-~~~ 567 (706)
++|. +..=+|.|..-..+ . +||+|++|||.+..++ ...+. .+.....+..+..+|+.+++| |.-
T Consensus 93 sEDC--LylNV~tp~~~~~~--~-~pV~V~iHGG~~~~gs--------~~~~~--~~~~~~~~~~~~VVvVt~~YRLG~l 157 (545)
T KOG1516|consen 93 SEDC--LYLNVYTPQGCSES--K-LPVMVYIHGGGFQFGS--------ASSFE--IISPAYVLLLKDVVVVTINYRLGPL 157 (545)
T ss_pred cCCC--ceEEEeccCCCccC--C-CCEEEEEeCCceeecc--------ccchh--hcCchhccccCCEEEEEecccceec
Confidence 3465 44458888762221 2 8999999999764322 11110 111222334456777776665 444
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHHHHHHc--CC-CCCCcEEEEEechHHHHHHHHHHh--CCCceeEEEeccCCC
Q 005240 568 GEGDKLPNDRFVEQLVSSAEAAVEEVVRR--GV-ADPSRIAVGGHSYGAFMTAHLLAH--APHLFCCGIARSGSY 637 (706)
Q Consensus 568 g~g~~~~~~~~~~~~~~D~~~~~~~l~~~--~~-id~~~i~i~G~S~GG~~a~~~~~~--~p~~~~a~v~~~~~~ 637 (706)
|+.-.......++..+.|+..|++|+.+. .+ -||++|.|+|+|+||..+..++.. ...+|+.+|.++|..
T Consensus 158 GF~st~d~~~~gN~gl~Dq~~AL~wv~~~I~~FGGdp~~vTl~G~saGa~~v~~l~~Sp~s~~LF~~aI~~SG~~ 232 (545)
T KOG1516|consen 158 GFLSTGDSAAPGNLGLFDQLLALRWVKDNIPSFGGDPKNVTLFGHSAGAASVSLLTLSPHSRGLFHKAISMSGNA 232 (545)
T ss_pred eeeecCCCCCCCcccHHHHHHHHHHHHHHHHhcCCCCCeEEEEeechhHHHHHHHhcCHhhHHHHHHHHhhcccc
Confidence 43221111112455577999999999985 33 699999999999999999877743 235788888888753
|
|
| >TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00024 Score=77.28 Aligned_cols=90 Identities=11% Similarity=0.056 Sum_probs=60.6
Q ss_pred hHHHHHHHCCeEEEEcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHH----HHH
Q 005240 546 TSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAH----LLA 621 (706)
Q Consensus 546 ~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~----~~~ 621 (706)
.+...|+++||.|++++-+ |.|.+.....+.+-...++.++++++.+. .+..++.+.|||+||.+++. ++.
T Consensus 211 Slv~~L~~qGf~V~~iDwr---gpg~s~~~~~~ddY~~~~i~~al~~v~~~--~g~~kv~lvG~cmGGtl~a~ala~~aa 285 (532)
T TIGR01838 211 SLVRWLVEQGHTVFVISWR---NPDASQADKTFDDYIRDGVIAALEVVEAI--TGEKQVNCVGYCIGGTLLSTALAYLAA 285 (532)
T ss_pred HHHHHHHHCCcEEEEEECC---CCCcccccCChhhhHHHHHHHHHHHHHHh--cCCCCeEEEEECcCcHHHHHHHHHHHH
Confidence 5678899999999885554 33333222222222345577888888764 34578999999999998632 344
Q ss_pred hC-CCceeEEEeccCCCCCC
Q 005240 622 HA-PHLFCCGIARSGSYNKT 640 (706)
Q Consensus 622 ~~-p~~~~a~v~~~~~~d~~ 640 (706)
.. ++++++++.++...|..
T Consensus 286 ~~~~~rv~slvll~t~~Df~ 305 (532)
T TIGR01838 286 RGDDKRIKSATFFTTLLDFS 305 (532)
T ss_pred hCCCCccceEEEEecCcCCC
Confidence 44 67899998888776643
|
This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell. |
| >COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.013 Score=66.29 Aligned_cols=179 Identities=13% Similarity=0.181 Sum_probs=99.3
Q ss_pred CCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEec
Q 005240 27 YPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIP 106 (706)
Q Consensus 27 ~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~ 106 (706)
++.+..+..+.|||||+.++|..+. .....++|+++.. | .++.... .+....|+|+|+.+++...
T Consensus 56 ~~~~~~~~~~~~spdg~~~~~~~~~------~~~~~~l~l~~~~-g---~~~~~~~-----~v~~~~~~~~g~~~~~~~~ 120 (620)
T COG1506 56 LTFGGGVSELRWSPDGSVLAFVSTD------GGRVAQLYLVDVG-G---LITKTAF-----GVSDARWSPDGDRIAFLTA 120 (620)
T ss_pred cccCCcccccccCCCCCEEEEEecc------CCCcceEEEEecC-C---ceeeeec-----ccccceeCCCCCeEEEEec
Confidence 3456678999999999999998742 1336899999987 4 2222222 2678899999999988432
Q ss_pred CCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCCCceecCCC-ceEeeeeeCCC
Q 005240 107 SSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTP-AVYTAVEPSPD 185 (706)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g~~~~lt~~-~~~~~~~~SpD 185 (706)
.......... . ...+.+....++.. ....++|+++..+....+... ..+..+.+.++
T Consensus 121 ~~~~~~~~~~--------~-----------~~~~~~~~~~~~~g---~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~ 178 (620)
T COG1506 121 EGASKRDGGD--------H-----------LFVDRLPVWFDGRG---GERSDLYVVDIESKLIKLGLGNLDVVSFATDGD 178 (620)
T ss_pred ccccccCCce--------e-----------eeecccceeecCCC---CcccceEEEccCcccccccCCCCceeeeeeCCC
Confidence 2111100000 0 00000000011100 134689999986644444444 56667777777
Q ss_pred CcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEe
Q 005240 186 QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEA 262 (706)
Q Consensus 186 G~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~ 262 (706)
++.++......... .......++....+.+..++..... ...+.|.++|+. +++...
T Consensus 179 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~gk~-~~~~~~ 235 (620)
T COG1506 179 GRLVASIRLDDDAD------PWVTNLYVLIEGNGELESLTPGEGS-------------ISKLAFDADGKS-IALLGT 235 (620)
T ss_pred CceeEEeeeccccC------CceEeeEEEecCCCceEEEcCCCce-------------eeeeeeCCCCCe-eEEecc
Confidence 77777665543200 0013344444345555665555433 225688999987 555543
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0034 Score=62.21 Aligned_cols=206 Identities=15% Similarity=0.082 Sum_probs=112.5
Q ss_pred ceEEEEcc-CC-CceecCCC---ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCC
Q 005240 157 AQLVLGSL-DG-TAKDFGTP---AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAE 231 (706)
Q Consensus 157 ~~l~~~~l-~g-~~~~lt~~---~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~ 231 (706)
..++++|. +| ....+... -.+.--.|||||++|+.+.++.... ...|-+||+.. ..+++...+...
T Consensus 28 ~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g--------~G~IgVyd~~~-~~~ri~E~~s~G 98 (305)
T PF07433_consen 28 TFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETG--------RGVIGVYDAAR-GYRRIGEFPSHG 98 (305)
T ss_pred cEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCC--------cEEEEEEECcC-CcEEEeEecCCC
Confidence 56888888 66 44455544 3455678999999998777654321 35789999983 334443332211
Q ss_pred CCCcccCccCCCCcceeeecCCCceEEEEEeccCCC---------CccccCccceeeeecCCCCCCCCce-E--Eee--c
Q 005240 232 DIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGD---------ANVEVSPRDIIYTQPAEPAEGEKPE-I--LHK--L 297 (706)
Q Consensus 232 ~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~---------~~~~~~~~~~l~~~d~~~~~~~~~~-~--l~~--~ 297 (706)
-|+-.+.|.|||+. |+.. +++- .-+...+...|..+|. .+|++. + |.. .
T Consensus 99 ----------IGPHel~l~pDG~t-LvVA---NGGI~Thpd~GR~kLNl~tM~psL~~ld~---~sG~ll~q~~Lp~~~~ 161 (305)
T PF07433_consen 99 ----------IGPHELLLMPDGET-LVVA---NGGIETHPDSGRAKLNLDTMQPSLVYLDA---RSGALLEQVELPPDLH 161 (305)
T ss_pred ----------cChhhEEEcCCCCE-EEEE---cCCCccCcccCceecChhhcCCceEEEec---CCCceeeeeecCcccc
Confidence 23447899999987 6533 2221 1122233445666666 566643 3 322 2
Q ss_pred ccccccceecCCCceEEEEeeccc---cceEEEEEcCCCCCCCceeeecCcccc-cccCCCCCceEeccCCCEEEEeeec
Q 005240 298 DLRFRSVSWCDDSLALVNETWYKT---SQTRTWLVCPGSKDVAPRVLFDRVFEN-VYSDPGSPMMTRTSTGTNVIAKIKK 373 (706)
Q Consensus 298 ~~~~~~~~wspDg~~l~~~~~~~~---~~~~l~~~d~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~s~dg~~l~~~~~~ 373 (706)
.-.+..++|.+||..++-...... ...-|.+....+ ..+.+ ...-.. .....-.-+++++++|..++++.-+
T Consensus 162 ~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~---~~~~~-~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPr 237 (305)
T PF07433_consen 162 QLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG---ALRLL-PAPEEQWRRLNGYIGSIAADRDGRLIAVTSPR 237 (305)
T ss_pred ccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC---cceec-cCChHHHHhhCCceEEEEEeCCCCEEEEECCC
Confidence 346788999999986665443221 222344444333 12222 111000 0001112247778888888777522
Q ss_pred cCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeeec
Q 005240 374 ENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWE 412 (706)
Q Consensus 374 ~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~ 412 (706)
+.. +..+|.++|+......
T Consensus 238 ------------------Gg~--~~~~d~~tg~~~~~~~ 256 (305)
T PF07433_consen 238 ------------------GGR--VAVWDAATGRLLGSVP 256 (305)
T ss_pred ------------------CCE--EEEEECCCCCEeeccc
Confidence 222 4456777887655443
|
|
| >KOG1553 consensus Predicted alpha/beta hydrolase BAT5 [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00018 Score=70.28 Aligned_cols=132 Identities=14% Similarity=0.105 Sum_probs=81.4
Q ss_pred eEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEc
Q 005240 482 KEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAG 561 (706)
Q Consensus 482 ~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~ 561 (706)
-....+++.||.+|...++--..-..+.+ --+|+.+-|. .+|...+ .+..-++.||.|+-.
T Consensus 214 G~R~kiks~dgneiDtmF~d~r~n~~~ng--q~LvIC~EGN---------------AGFYEvG--~m~tP~~lgYsvLGw 274 (517)
T KOG1553|consen 214 GQRLKIKSSDGNEIDTMFLDGRPNQSGNG--QDLVICFEGN---------------AGFYEVG--VMNTPAQLGYSVLGW 274 (517)
T ss_pred CeEEEEeecCCcchhheeecCCCCCCCCC--ceEEEEecCC---------------ccceEee--eecChHHhCceeecc
Confidence 45677888899999887775432111111 2456655553 1232222 123346799999985
Q ss_pred CCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHc-CCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCC
Q 005240 562 PSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRR-GVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYN 638 (706)
Q Consensus 562 ~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~-~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d 638 (706)
|..|..| +..- .+.......+.++++|.++. ++ -++.|.++|||-||+-++|++..+|+ ++|+|..+..-|
T Consensus 275 NhPGFag---STG~-P~p~n~~nA~DaVvQfAI~~Lgf-~~edIilygWSIGGF~~~waAs~YPd-VkavvLDAtFDD 346 (517)
T KOG1553|consen 275 NHPGFAG---STGL-PYPVNTLNAADAVVQFAIQVLGF-RQEDIILYGWSIGGFPVAWAASNYPD-VKAVVLDATFDD 346 (517)
T ss_pred CCCCccc---cCCC-CCcccchHHHHHHHHHHHHHcCC-CccceEEEEeecCCchHHHHhhcCCC-ceEEEeecchhh
Confidence 5443322 2111 11111222233567888775 55 46889999999999999999999975 788888876555
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0048 Score=63.21 Aligned_cols=196 Identities=11% Similarity=0.111 Sum_probs=121.6
Q ss_pred CCcccceeeCCCCC-eEEEEeeccccccccCCceeEEEEEcCCCceee-cccCCCccccccccceEEecCCcEEEEEecC
Q 005240 30 GAKINFVSWSPDGK-RIAFSVRVDEEDNVSSCKLRVWIADAETGEAKP-LFESPDICLNAVFGSFVWVNNSTLLIFTIPS 107 (706)
Q Consensus 30 ~~~~~~~~~SPDG~-~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~-lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~ 107 (706)
...++...|||..- .+|.++ +...+|| +..+-..++ +.++... +.+..+-.||+.|+..-
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~---------S~rvqly--~~~~~~~~k~~srFk~~-----v~s~~fR~DG~LlaaGD-- 87 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTS---------SVRVQLY--SSVTRSVRKTFSRFKDV-----VYSVDFRSDGRLLAAGD-- 87 (487)
T ss_pred cCcceeEecCCCCCCceEEec---------ccEEEEE--ecchhhhhhhHHhhccc-----eeEEEeecCCeEEEccC--
Confidence 34688899999333 234433 3334554 555554444 5555443 67788889999877541
Q ss_pred CCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCC--CceecCCC-ceEeeeeeCC
Q 005240 108 SRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG--TAKDFGTP-AVYTAVEPSP 184 (706)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g--~~~~lt~~-~~~~~~~~Sp 184 (706)
..+.+-++|.+. -.+.+... ..+....|+|
T Consensus 88 -----------------------------------------------~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~ 120 (487)
T KOG0310|consen 88 -----------------------------------------------ESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSP 120 (487)
T ss_pred -----------------------------------------------CcCcEEEeccccHHHHHHHhhccCceeEEEecc
Confidence 125666777644 34444444 5677888999
Q ss_pred CCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEecc
Q 005240 185 DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQD 264 (706)
Q Consensus 185 DG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~ 264 (706)
+++.++.+..+. .-+.+|++++..+. +...+.+ +.++..+|+|-... |++. .
T Consensus 121 ~d~t~l~s~sDd------------~v~k~~d~s~a~v~--~~l~~ht----------DYVR~g~~~~~~~h-ivvt---G 172 (487)
T KOG0310|consen 121 QDNTMLVSGSDD------------KVVKYWDLSTAYVQ--AELSGHT----------DYVRCGDISPANDH-IVVT---G 172 (487)
T ss_pred cCCeEEEecCCC------------ceEEEEEcCCcEEE--EEecCCc----------ceeEeeccccCCCe-EEEe---c
Confidence 998887665543 46778899887752 2222221 44667889998777 5543 2
Q ss_pred CCCCccccCccceeeeecCCCCCCCCceEE-eecccccccceecCCCceEEEEeeccccceEEEEEcCCCC
Q 005240 265 RGDANVEVSPRDIIYTQPAEPAEGEKPEIL-HKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK 334 (706)
Q Consensus 265 ~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l-~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~ 334 (706)
+.+ +.|.+||. .......+ .+....+..+-+.|.|..|+.+. .+.+-++|+.++
T Consensus 173 sYD--------g~vrl~Dt---R~~~~~v~elnhg~pVe~vl~lpsgs~iasAg-----Gn~vkVWDl~~G 227 (487)
T KOG0310|consen 173 SYD--------GKVRLWDT---RSLTSRVVELNHGCPVESVLALPSGSLIASAG-----GNSVKVWDLTTG 227 (487)
T ss_pred CCC--------ceEEEEEe---ccCCceeEEecCCCceeeEEEcCCCCEEEEcC-----CCeEEEEEecCC
Confidence 222 24778887 33323333 35567888999999999888643 334777788754
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0005 Score=64.11 Aligned_cols=196 Identities=15% Similarity=0.195 Sum_probs=118.7
Q ss_pred CcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCC
Q 005240 31 AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (706)
Q Consensus 31 ~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~ 110 (706)
..+...+||-|.++|+.... +.--.||.++-....+..+..+++ +++...|--..+.|+..+++
T Consensus 101 hivk~~af~~ds~~lltgg~--------ekllrvfdln~p~App~E~~ghtg-----~Ir~v~wc~eD~~iLSSadd--- 164 (334)
T KOG0278|consen 101 HIVKAVAFSQDSNYLLTGGQ--------EKLLRVFDLNRPKAPPKEISGHTG-----GIRTVLWCHEDKCILSSADD--- 164 (334)
T ss_pred heeeeEEecccchhhhccch--------HHHhhhhhccCCCCCchhhcCCCC-----cceeEEEeccCceEEeeccC---
Confidence 35677889999988866332 222334433333334444443333 37777887666665543211
Q ss_pred CCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CC-CceecCCCceEeeeeeCCCCcE
Q 005240 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTPAVYTAVEPSPDQKY 188 (706)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g-~~~~lt~~~~~~~~~~SpDG~~ 188 (706)
..+-++|. +| +.+.|.....+.++.+|+||++
T Consensus 165 ----------------------------------------------~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~i 198 (334)
T KOG0278|consen 165 ----------------------------------------------KTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRI 198 (334)
T ss_pred ----------------------------------------------CceEEEEeccCcEEEEEecCCCCcceeeccCCCE
Confidence 45666687 77 6777777778889999999998
Q ss_pred EEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCC
Q 005240 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDA 268 (706)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~ 268 (706)
|..... +.|..|+.++=.+-+-.+.+.. +...+.+|+.. ++++ ++..
T Consensus 199 lTia~g--------------ssV~Fwdaksf~~lKs~k~P~n-------------V~SASL~P~k~--~fVa----Gged 245 (334)
T KOG0278|consen 199 LTIAYG--------------SSVKFWDAKSFGLLKSYKMPCN-------------VESASLHPKKE--FFVA----GGED 245 (334)
T ss_pred EEEecC--------------ceeEEeccccccceeeccCccc-------------cccccccCCCc--eEEe----cCcc
Confidence 864432 3577788764332222222211 22446788774 4433 2222
Q ss_pred ccccCccceeeeecCCCCCCCCceEEe--ecccccccceecCCCceEEEEeeccccceEEEEEcCCC
Q 005240 269 NVEVSPRDIIYTQPAEPAEGEKPEILH--KLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (706)
Q Consensus 269 ~~~~~~~~~l~~~d~~~~~~~~~~~l~--~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~ 333 (706)
. .+|.+|- .+|+..... .+.+.+-.+.|||||...+..+ +++..+||...+..
T Consensus 246 ~-------~~~kfDy---~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGS--EDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 246 F-------KVYKFDY---NTGEEIGSYNKGHFGPVHCVRFSPDGELYASGS--EDGTIRLWQTTPGK 300 (334)
T ss_pred e-------EEEEEec---cCCceeeecccCCCCceEEEEECCCCceeeccC--CCceEEEEEecCCC
Confidence 2 3777777 566555442 4467777889999999666554 44778999998765
|
|
| >PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0003 Score=65.57 Aligned_cols=35 Identities=17% Similarity=0.270 Sum_probs=28.0
Q ss_pred CCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCC
Q 005240 601 PSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYN 638 (706)
Q Consensus 601 ~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d 638 (706)
+..++++|.|+||+.|.+++.+++ ++| |+++|...
T Consensus 58 ~~~~~liGSSlGG~~A~~La~~~~--~~a-vLiNPav~ 92 (187)
T PF05728_consen 58 PENVVLIGSSLGGFYATYLAERYG--LPA-VLINPAVR 92 (187)
T ss_pred CCCeEEEEEChHHHHHHHHHHHhC--CCE-EEEcCCCC
Confidence 345999999999999999999883 455 67777654
|
One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised. |
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0077 Score=62.40 Aligned_cols=107 Identities=11% Similarity=0.120 Sum_probs=62.7
Q ss_pred ceEEEEccCCCc-eecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecC-CCeeEEcccCCCCCCC
Q 005240 157 AQLVLGSLDGTA-KDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD-GKLVRELCDLPPAEDI 233 (706)
Q Consensus 157 ~~l~~~~l~g~~-~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~l~~~~~~~~~ 233 (706)
+.|-.+.-+|-. ..+.+. ..+.+.+|.|++..|+|.... ++++-.+. ..++-+...+++-
T Consensus 126 G~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~--------------h~~IKpL~~n~k~i~WkAHDGi--- 188 (737)
T KOG1524|consen 126 GVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQGG--------------HISIKPLAANSKIIRWRAHDGL--- 188 (737)
T ss_pred ceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEecCC--------------eEEEeecccccceeEEeccCcE---
Confidence 567777777722 223333 678899999999999998743 45554444 2222222222211
Q ss_pred CcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEe---ecccccccceecCC
Q 005240 234 PVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH---KLDLRFRSVSWCDD 309 (706)
Q Consensus 234 p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~---~~~~~~~~~~wspD 309 (706)
+-.+.|++...- |+ .+|+.. ...+||. .| +.|. .+...+.+++|.||
T Consensus 189 ----------iL~~~W~~~s~l-I~-----sgGED~-------kfKvWD~---~G---~~Lf~S~~~ey~ITSva~npd 238 (737)
T KOG1524|consen 189 ----------VLSLSWSTQSNI-IA-----SGGEDF-------RFKIWDA---QG---ANLFTSAAEEYAITSVAFNPE 238 (737)
T ss_pred ----------EEEeecCccccc-ee-----ecCCce-------eEEeecc---cC---cccccCChhccceeeeeeccc
Confidence 226688888763 22 223322 2556766 22 2333 34677889999999
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0013 Score=70.57 Aligned_cols=200 Identities=16% Similarity=0.184 Sum_probs=117.5
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEE---cCCCceee-cccCCCc--cccccccceEEecCCcEEEEEe
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIAD---AETGEAKP-LFESPDI--CLNAVFGSFVWVNNSTLLIFTI 105 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d---~~~g~~~~-lt~~~~~--~~~~~~~~~~wSpDg~~l~~~~ 105 (706)
-.+....+||++.++..+. +....+|-.. ...|..++ |.-...+ .+...+..+..||||++|+...
T Consensus 456 aIWsi~~~pD~~g~vT~sa--------DktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsL 527 (888)
T KOG0306|consen 456 AIWSISLSPDNKGFVTGSA--------DKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSL 527 (888)
T ss_pred ceeeeeecCCCCceEEecC--------CcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEe
Confidence 4778899999999988764 4445555322 12333322 2111111 1122266889999999998763
Q ss_pred cCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCCCce-ecCCC-ceEeeeeeC
Q 005240 106 PSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAK-DFGTP-AVYTAVEPS 183 (706)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g~~~-~lt~~-~~~~~~~~S 183 (706)
-. ..-.+|-+|-= +.. .|-.+ -.+.++.+|
T Consensus 528 Ld-----------------------------------------------nTVkVyflDtl-KFflsLYGHkLPV~smDIS 559 (888)
T KOG0306|consen 528 LD-----------------------------------------------NTVKVYFLDTL-KFFLSLYGHKLPVLSMDIS 559 (888)
T ss_pred cc-----------------------------------------------CeEEEEEecce-eeeeeecccccceeEEecc
Confidence 21 11233333310 111 11112 367799999
Q ss_pred CCCcEEEEEeeccCcccccccccccceEEEEecC-CCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEe
Q 005240 184 PDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD-GKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEA 262 (706)
Q Consensus 184 pDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~ 262 (706)
||++.|+-.+.+ ..+-+|-++ |...+.+..+.. .+..+.|-|+.. ++|...
T Consensus 560 ~DSklivTgSAD-------------KnVKiWGLdFGDCHKS~fAHdD-------------Svm~V~F~P~~~--~FFt~g 611 (888)
T KOG0306|consen 560 PDSKLIVTGSAD-------------KNVKIWGLDFGDCHKSFFAHDD-------------SVMSVQFLPKTH--LFFTCG 611 (888)
T ss_pred CCcCeEEeccCC-------------CceEEeccccchhhhhhhcccC-------------ceeEEEEcccce--eEEEec
Confidence 999998755443 478899998 666666655442 234668888432 666643
Q ss_pred ccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccccceEEEEEc
Q 005240 263 QDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVC 330 (706)
Q Consensus 263 ~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d 330 (706)
.++ .+..||.+ .=...+.|..+...+.-.+.+|+|.+++..+ ++...++|..+
T Consensus 612 KD~-----------kvKqWDg~--kFe~iq~L~~H~~ev~cLav~~~G~~vvs~s--hD~sIRlwE~t 664 (888)
T KOG0306|consen 612 KDG-----------KVKQWDGE--KFEEIQKLDGHHSEVWCLAVSPNGSFVVSSS--HDKSIRLWERT 664 (888)
T ss_pred Ccc-----------eEEeechh--hhhhheeeccchheeeeeEEcCCCCeEEecc--CCceeEeeecc
Confidence 322 35567653 1234556666777788889999999887654 33456677664
|
|
| >TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171 | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0015 Score=73.12 Aligned_cols=86 Identities=17% Similarity=0.327 Sum_probs=53.6
Q ss_pred ceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCc--eeecccCCCc
Q 005240 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE--AKPLFESPDI 83 (706)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~--~~~lt~~~~~ 83 (706)
+|.+.|.+. +..+.|. +.....+..|.|||||++|||..... . -.+...||+.++.+.. ..+|- .+.
T Consensus 330 ~L~~~D~dG----~n~~~ve-~~~~~~i~sP~~SPDG~~vAY~ts~e---~-~~g~s~vYv~~L~t~~~~~vkl~-ve~- 398 (912)
T TIGR02171 330 NLAYIDYTK----GASRAVE-IEDTISVYHPDISPDGKKVAFCTGIE---G-LPGKSSVYVRNLNASGSGLVKLP-VEN- 398 (912)
T ss_pred eEEEEecCC----CCceEEE-ecCCCceecCcCCCCCCEEEEEEeec---C-CCCCceEEEEehhccCCCceEee-ccc-
Confidence 566666655 7777772 23444688999999999999933321 0 1367889999987643 33331 111
Q ss_pred cccccccceEE--ecCCcE-EEEEecC
Q 005240 84 CLNAVFGSFVW--VNNSTL-LIFTIPS 107 (706)
Q Consensus 84 ~~~~~~~~~~w--SpDg~~-l~~~~~~ 107 (706)
...|.| .++|.. |+|.++.
T Consensus 399 -----aaiprwrv~e~gdt~ivyv~~a 420 (912)
T TIGR02171 399 -----AAIPRWRVLENGDTVIVYVSDA 420 (912)
T ss_pred -----ccccceEecCCCCeEEEEEcCC
Confidence 235567 478865 6666543
|
This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown. |
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=97.67 E-value=8e-05 Score=49.72 Aligned_cols=38 Identities=24% Similarity=0.518 Sum_probs=25.7
Q ss_pred eeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEE
Q 005240 22 KEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWI 66 (706)
Q Consensus 22 ~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~ 66 (706)
+|++. .......|.|||||++|+|++++++ .+..+||+
T Consensus 2 ~~~t~--~~~~~~~p~~SpDGk~i~f~s~~~~-----~g~~diy~ 39 (39)
T PF07676_consen 2 KQLTN--SPGDDGSPAWSPDGKYIYFTSNRND-----RGSFDIYV 39 (39)
T ss_dssp EEES---SSSSEEEEEE-TTSSEEEEEEECT-------SSEEEEE
T ss_pred cCccc--CCccccCEEEecCCCEEEEEecCCC-----CCCcCEEC
Confidence 34543 3335889999999999999997521 36778885
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00064 Score=68.21 Aligned_cols=199 Identities=13% Similarity=0.049 Sum_probs=107.6
Q ss_pred ccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCC
Q 005240 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDP 112 (706)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~ 112 (706)
..-+++++||+.||.... ++.-.+|-++-.........+ .. .+.++.|||||+.|++.+.
T Consensus 147 ~k~vaf~~~gs~latgg~--------dg~lRv~~~Ps~~t~l~e~~~-~~-----eV~DL~FS~dgk~lasig~------ 206 (398)
T KOG0771|consen 147 QKVVAFNGDGSKLATGGT--------DGTLRVWEWPSMLTILEEIAH-HA-----EVKDLDFSPDGKFLASIGA------ 206 (398)
T ss_pred ceEEEEcCCCCEeeeccc--------cceEEEEecCcchhhhhhHhh-cC-----ccccceeCCCCcEEEEecC------
Confidence 356789999999988643 555666655433222222211 12 3889999999999998742
Q ss_pred CCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CC-CceecCCC---ceEeeeeeCCCC-
Q 005240 113 PKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTP---AVYTAVEPSPDQ- 186 (706)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g-~~~~lt~~---~~~~~~~~SpDG- 186 (706)
..+.++++ +| ...+++.. ..+..+.|+-|+
T Consensus 207 --------------------------------------------d~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~ 242 (398)
T KOG0771|consen 207 --------------------------------------------DSARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNA 242 (398)
T ss_pred --------------------------------------------CceEEEEeccCchhhhcCCcccchhhhhceecccCC
Confidence 23444455 55 55555533 345678888777
Q ss_pred --cEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEecc
Q 005240 187 --KYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQD 264 (706)
Q Consensus 187 --~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~ 264 (706)
...++......... ...++.+|.-+ ..-++.... ....++..+..|+||+. ++.-..
T Consensus 243 ~~~l~laa~~~~~~~v------~~~~~~~w~~~--~~l~~~~~~----------~~~~siSsl~VS~dGkf-~AlGT~-- 301 (398)
T KOG0771|consen 243 QETLRLAASQFPGGGV------RLCDISLWSGS--NFLRLRKKI----------KRFKSISSLAVSDDGKF-LALGTM-- 301 (398)
T ss_pred CceEEEEEecCCCCce------eEEEeeeeccc--cccchhhhh----------hccCcceeEEEcCCCcE-EEEecc--
Confidence 33333332211100 01334444322 111111100 00123557899999996 554321
Q ss_pred CCCCccccCccceeeeecCCCCCCCCceEE--e--ecccccccceecCCCceEEEEeeccccceEEEEEcCCC
Q 005240 265 RGDANVEVSPRDIIYTQPAEPAEGEKPEIL--H--KLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (706)
Q Consensus 265 ~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l--~--~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~ 333 (706)
. +.+-++++ .+++.+ . .+...+..++|+||.++++-.+.. ...+|..+..+.
T Consensus 302 d----------GsVai~~~-----~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~--~~~~v~~l~vd~ 357 (398)
T KOG0771|consen 302 D----------GSVAIYDA-----KSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSD--NEAAVTKLAVDK 357 (398)
T ss_pred C----------CcEEEEEe-----ceeeeeEeehhhheeeeeeEEEcCCcCcccccccC--CceeEEEEeecc
Confidence 1 12445544 233332 2 345678899999999988875432 344566666544
|
|
| >PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0018 Score=62.70 Aligned_cols=131 Identities=11% Similarity=0.101 Sum_probs=76.3
Q ss_pred eEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEc
Q 005240 482 KEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAG 561 (706)
Q Consensus 482 ~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~ 561 (706)
...+.+...+|..++-.-.+-+.-. .+.+..+||-+||.| .++.. +......|.+.|+.++..
T Consensus 6 ~~~~k~~~~~~~~~~~~a~y~D~~~--~gs~~gTVv~~hGsP--------------GSH~D-FkYi~~~l~~~~iR~I~i 68 (297)
T PF06342_consen 6 RKLVKFQAENGKIVTVQAVYEDSLP--SGSPLGTVVAFHGSP--------------GSHND-FKYIRPPLDEAGIRFIGI 68 (297)
T ss_pred EEEEEcccccCceEEEEEEEEecCC--CCCCceeEEEecCCC--------------CCccc-hhhhhhHHHHcCeEEEEe
Confidence 3456666666654443333222211 123467999999976 22322 234567788999999997
Q ss_pred CCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCC
Q 005240 562 PSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 636 (706)
Q Consensus 562 ~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~ 636 (706)
|+.|. |+-.......+.+.... .-++.+.++--++ .++.++|||.|+-.|+.++...| ..++++.+|+
T Consensus 69 N~PGf-~~t~~~~~~~~~n~er~---~~~~~ll~~l~i~-~~~i~~gHSrGcenal~la~~~~--~~g~~lin~~ 136 (297)
T PF06342_consen 69 NYPGF-GFTPGYPDQQYTNEERQ---NFVNALLDELGIK-GKLIFLGHSRGCENALQLAVTHP--LHGLVLINPP 136 (297)
T ss_pred CCCCC-CCCCCCcccccChHHHH---HHHHHHHHHcCCC-CceEEEEeccchHHHHHHHhcCc--cceEEEecCC
Confidence 77532 32222222222222221 1233344433354 89999999999999999999995 3466666654
|
|
| >PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00032 Score=75.95 Aligned_cols=90 Identities=23% Similarity=0.148 Sum_probs=59.8
Q ss_pred HHHHHHH-CCeEEEEcCCCCcCCCCCCCCchh---------hHHHHHHHHHHHHHHHHHcC-CCCCCcEEEEEechHHHH
Q 005240 547 SSLIFLA-RRFAVLAGPSIPIIGEGDKLPNDR---------FVEQLVSSAEAAVEEVVRRG-VADPSRIAVGGHSYGAFM 615 (706)
Q Consensus 547 ~~~~l~~-~G~~v~~~~~~~~~g~g~~~~~~~---------~~~~~~~D~~~~~~~l~~~~-~id~~~i~i~G~S~GG~~ 615 (706)
.+..||+ .|-+|+. .-.|-||++.+... ..++++.|+...++++..+. ..+..+++++|+||||.|
T Consensus 50 ~~~~lA~~~~a~~v~---lEHRyYG~S~P~~~~s~~nL~yLt~~QALaD~a~F~~~~~~~~~~~~~~pwI~~GgSY~G~L 126 (434)
T PF05577_consen 50 FMWELAKEFGALVVA---LEHRYYGKSQPFGDLSTENLRYLTSEQALADLAYFIRYVKKKYNTAPNSPWIVFGGSYGGAL 126 (434)
T ss_dssp HHHHHHHHHTEEEEE---E--TTSTTB-TTGGGGGSTTTC-SHHHHHHHHHHHHHHHHHHTTTGCC--EEEEEETHHHHH
T ss_pred hHHHHHHHcCCcEEE---eehhhhcCCCCccccchhhHHhcCHHHHHHHHHHHHHHHHHhhcCCCCCCEEEECCcchhHH
Confidence 3445665 5555544 12224666654321 25688999999999998653 345569999999999999
Q ss_pred HHHHHHhCCCceeEEEeccCCCCC
Q 005240 616 TAHLLAHAPHLFCCGIARSGSYNK 639 (706)
Q Consensus 616 a~~~~~~~p~~~~a~v~~~~~~d~ 639 (706)
|+|+-.++|+.|.++++.++....
T Consensus 127 aaw~r~kyP~~~~ga~ASSapv~a 150 (434)
T PF05577_consen 127 AAWFRLKYPHLFDGAWASSAPVQA 150 (434)
T ss_dssp HHHHHHH-TTT-SEEEEET--CCH
T ss_pred HHHHHhhCCCeeEEEEeccceeee
Confidence 999999999999998888876543
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C. |
| >PRK00175 metX homoserine O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00047 Score=73.17 Aligned_cols=78 Identities=17% Similarity=0.180 Sum_probs=52.3
Q ss_pred HCCeEEEEcCCCCcCC-C-CCCCCc------------hhhHHHHHHHHHHHHHHHHHcCCCCCCc-EEEEEechHHHHHH
Q 005240 553 ARRFAVLAGPSIPIIG-E-GDKLPN------------DRFVEQLVSSAEAAVEEVVRRGVADPSR-IAVGGHSYGAFMTA 617 (706)
Q Consensus 553 ~~G~~v~~~~~~~~~g-~-g~~~~~------------~~~~~~~~~D~~~~~~~l~~~~~id~~~-i~i~G~S~GG~~a~ 617 (706)
..+|.|++++-+|..+ . +.+... ........+|+.+.++.+ +-++ +.++|+||||.+++
T Consensus 89 ~~~~~vi~~Dl~G~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l------~~~~~~~lvG~S~Gg~ia~ 162 (379)
T PRK00175 89 TDRYFVICSNVLGGCKGSTGPSSINPDTGKPYGSDFPVITIRDWVRAQARLLDAL------GITRLAAVVGGSMGGMQAL 162 (379)
T ss_pred ccceEEEeccCCCCCCCCCCCCCCCCCCCCcccCCCCcCCHHHHHHHHHHHHHHh------CCCCceEEEEECHHHHHHH
Confidence 5789999977655211 1 111000 112445566666655543 2356 58999999999999
Q ss_pred HHHHhCCCceeEEEeccCC
Q 005240 618 HLLAHAPHLFCCGIARSGS 636 (706)
Q Consensus 618 ~~~~~~p~~~~a~v~~~~~ 636 (706)
.++.++|++++.+|..++.
T Consensus 163 ~~a~~~p~~v~~lvl~~~~ 181 (379)
T PRK00175 163 EWAIDYPDRVRSALVIASS 181 (379)
T ss_pred HHHHhChHhhhEEEEECCC
Confidence 9999999999999988754
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0021 Score=67.64 Aligned_cols=135 Identities=13% Similarity=0.185 Sum_probs=77.8
Q ss_pred ceEEEEccCCCcee-------cCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeE-EcccC
Q 005240 157 AQLVLGSLDGTAKD-------FGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR-ELCDL 227 (706)
Q Consensus 157 ~~l~~~~l~g~~~~-------lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~ 227 (706)
-.||++...|-.+. |+.+ .-+..+.|.|=..-++.++. +...|.+||+...+.+ +|..+
T Consensus 652 i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~as------------yd~Ti~lWDl~~~~~~~~l~gH 719 (1012)
T KOG1445|consen 652 INLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVAS------------YDSTIELWDLANAKLYSRLVGH 719 (1012)
T ss_pred EEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhh------------ccceeeeeehhhhhhhheeccC
Confidence 56777777663322 2322 45666777764333322221 2368999999865433 33222
Q ss_pred CCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeec----cccccc
Q 005240 228 PPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL----DLRFRS 303 (706)
Q Consensus 228 ~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~----~~~~~~ 303 (706)
. +++..|+|||||+. ++-+. + .+.|++++. .. ..+.+... ..+-..
T Consensus 720 t-------------dqIf~~AWSpdGr~-~AtVc--K----------Dg~~rVy~P---rs-~e~pv~Eg~gpvgtRgAR 769 (1012)
T KOG1445|consen 720 T-------------DQIFGIAWSPDGRR-IATVC--K----------DGTLRVYEP---RS-REQPVYEGKGPVGTRGAR 769 (1012)
T ss_pred c-------------CceeEEEECCCCcc-eeeee--c----------CceEEEeCC---CC-CCCccccCCCCccCccee
Confidence 2 34668999999998 76543 1 124556554 22 22233222 234456
Q ss_pred ceecCCCceEEEEeeccccceEEEEEcCCC
Q 005240 304 VSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (706)
Q Consensus 304 ~~wspDg~~l~~~~~~~~~~~~l~~~d~~~ 333 (706)
+.|.=||+.|++...++....+|-++|..+
T Consensus 770 i~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~ 799 (1012)
T KOG1445|consen 770 ILWACDGRIVIVVGFDKSSERQVQMYDAQT 799 (1012)
T ss_pred EEEEecCcEEEEecccccchhhhhhhhhhh
Confidence 789999999988765554555677777665
|
|
| >PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00023 Score=72.69 Aligned_cols=121 Identities=17% Similarity=0.079 Sum_probs=72.2
Q ss_pred EEEEEe-cCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHH-H-CCeEEEEcCCCCcC--CCC
Q 005240 496 TATLYL-PPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFL-A-RRFAVLAGPSIPII--GEG 570 (706)
Q Consensus 496 ~~~l~~-P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~-~G~~v~~~~~~~~~--g~g 570 (706)
.-|++. |.+++++. -|+|||+|||++..+.. .........+. . ...+++..+|.-.. .+|
T Consensus 107 s~Wlvk~P~~~~pk~---DpVlIYlHGGGY~l~~~------------p~qi~~L~~i~~~l~~~SILvLDYsLt~~~~~~ 171 (374)
T PF10340_consen 107 SYWLVKAPNRFKPKS---DPVLIYLHGGGYFLGTT------------PSQIEFLLNIYKLLPEVSILVLDYSLTSSDEHG 171 (374)
T ss_pred eEEEEeCCcccCCCC---CcEEEEEcCCeeEecCC------------HHHHHHHHHHHHHcCCCeEEEEeccccccccCC
Confidence 357887 87766654 39999999997642110 00111111111 1 13355554553221 122
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHH-cCCCCCCcEEEEEechHHHHHHHHHHhC-----CCceeEEEeccCCCCCC
Q 005240 571 DKLPNDRFVEQLVSSAEAAVEEVVR-RGVADPSRIAVGGHSYGAFMTAHLLAHA-----PHLFCCGIARSGSYNKT 640 (706)
Q Consensus 571 ~~~~~~~~~~~~~~D~~~~~~~l~~-~~~id~~~i~i~G~S~GG~~a~~~~~~~-----p~~~~a~v~~~~~~d~~ 640 (706)
..+ ...+.++.++.++|.+ ++ .++|.+||.|+||.|++.++..- ...-+.+|+.+|-.+..
T Consensus 172 ~~y------PtQL~qlv~~Y~~Lv~~~G---~~nI~LmGDSAGGnL~Ls~LqyL~~~~~~~~Pk~~iLISPWv~l~ 238 (374)
T PF10340_consen 172 HKY------PTQLRQLVATYDYLVESEG---NKNIILMGDSAGGNLALSFLQYLKKPNKLPYPKSAILISPWVNLV 238 (374)
T ss_pred CcC------chHHHHHHHHHHHHHhccC---CCeEEEEecCccHHHHHHHHHHHhhcCCCCCCceeEEECCCcCCc
Confidence 222 2235667788999994 44 37999999999999998887432 12368899999876544
|
In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved []. |
| >PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00012 Score=71.48 Aligned_cols=76 Identities=21% Similarity=0.201 Sum_probs=52.5
Q ss_pred eEEEEcCCCCcCCCCCCCC--chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEec
Q 005240 556 FAVLAGPSIPIIGEGDKLP--NDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIAR 633 (706)
Q Consensus 556 ~~v~~~~~~~~~g~g~~~~--~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~ 633 (706)
|.|++.+-+ |+|.+.. ...+-.-...|+.+.++.+++.--+ +++.++||||||.+++.++.++|++++++++.
T Consensus 1 f~vi~~d~r---G~g~S~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~vG~S~Gg~~~~~~a~~~p~~v~~lvl~ 75 (230)
T PF00561_consen 1 FDVILFDLR---GFGYSSPHWDPDFPDYTTDDLAADLEALREALGI--KKINLVGHSMGGMLALEYAAQYPERVKKLVLI 75 (230)
T ss_dssp EEEEEEECT---TSTTSSSCCGSGSCTHCHHHHHHHHHHHHHHHTT--SSEEEEEETHHHHHHHHHHHHSGGGEEEEEEE
T ss_pred CEEEEEeCC---CCCCCCCCccCCcccccHHHHHHHHHHHHHHhCC--CCeEEEEECCChHHHHHHHHHCchhhcCcEEE
Confidence 556765554 4444432 1112122355666667767664223 45999999999999999999999999999999
Q ss_pred cCC
Q 005240 634 SGS 636 (706)
Q Consensus 634 ~~~ 636 (706)
++.
T Consensus 76 ~~~ 78 (230)
T PF00561_consen 76 SPP 78 (230)
T ss_dssp SES
T ss_pred eee
Confidence 885
|
; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A .... |
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0066 Score=59.03 Aligned_cols=129 Identities=13% Similarity=0.143 Sum_probs=66.8
Q ss_pred ceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCC
Q 005240 209 QKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEG 288 (706)
Q Consensus 209 ~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 288 (706)
.-|.+||.-+++.|.-...-.+-..- .+...+.|||||.+ |+ . +..+ -|.+.|.. ..|
T Consensus 133 ~PIh~wdaftG~lraSy~~ydh~de~-------taAhsL~Fs~DGeq-lf-a-----Gykr-------cirvFdt~-RpG 190 (406)
T KOG2919|consen 133 QPIHLWDAFTGKLRASYRAYDHQDEY-------TAAHSLQFSPDGEQ-LF-A-----GYKR-------CIRVFDTS-RPG 190 (406)
T ss_pred CceeeeeccccccccchhhhhhHHhh-------hhheeEEecCCCCe-Ee-e-----cccc-------eEEEeecc-CCC
Confidence 36889999877766432221100000 11236799999998 54 2 1111 24555551 122
Q ss_pred CCc---eEEee----cccccccceecCCC-ceEEEEeeccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEe
Q 005240 289 EKP---EILHK----LDLRFRSVSWCDDS-LALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTR 360 (706)
Q Consensus 289 ~~~---~~l~~----~~~~~~~~~wspDg-~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 360 (706)
..- ..++. ..+.+.-++++|-. +.+++.+ +. +...||.-+ + ..|..+..+.- .|+..+.|
T Consensus 191 r~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gs-Y~-q~~giy~~~--~--~~pl~llggh~------gGvThL~~ 258 (406)
T KOG2919|consen 191 RDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGS-YG-QRVGIYNDD--G--RRPLQLLGGHG------GGVTHLQW 258 (406)
T ss_pred CCCcchhhhhcccccccceeeeeeccCCCCcceeeec-cc-ceeeeEecC--C--CCceeeecccC------CCeeeEEe
Confidence 211 12222 24556778899964 5666654 32 223344443 3 33555533221 24456889
Q ss_pred ccCCCEEEEee
Q 005240 361 TSTGTNVIAKI 371 (706)
Q Consensus 361 s~dg~~l~~~~ 371 (706)
.+||.+++..+
T Consensus 259 ~edGn~lfsGa 269 (406)
T KOG2919|consen 259 CEDGNKLFSGA 269 (406)
T ss_pred ccCcCeecccc
Confidence 99999876655
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00053 Score=77.06 Aligned_cols=235 Identities=15% Similarity=0.209 Sum_probs=142.0
Q ss_pred cceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCe----EEEEeeccccccccCCceeEEEEEc--CCCceeecc
Q 005240 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKR----IAFSVRVDEEDNVSSCKLRVWIADA--ETGEAKPLF 78 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~----laf~~~~~~~~~~~~~~~~l~~~d~--~~g~~~~lt 78 (706)
.++.|..++-.+..+..+++-.+....+....+|++-|.. ||=.. .+|.-.||-.+. ++++...|.
T Consensus 39 ~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~--------edG~I~ly~p~~~~~~~~~~~la 110 (1049)
T KOG0307|consen 39 ASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGL--------EDGNIVLYDPASIIANASEEVLA 110 (1049)
T ss_pred cccceeeecccCccccccccccccccccceeeeecccCCCccceeeccc--------cCCceEEecchhhccCcchHHHh
Confidence 4455666655334444567766777778899999999998 44322 155555554443 233333333
Q ss_pred cCCCccccccccceEEecCCc-EEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccc
Q 005240 79 ESPDICLNAVFGSFVWVNNST-LLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTA 157 (706)
Q Consensus 79 ~~~~~~~~~~~~~~~wSpDg~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 157 (706)
....+ .+.|..+.+.+... .|+... ..+
T Consensus 111 ~~~~h--~G~V~gLDfN~~q~nlLASGa-------------------------------------------------~~g 139 (1049)
T KOG0307|consen 111 TKSKH--TGPVLGLDFNPFQGNLLASGA-------------------------------------------------DDG 139 (1049)
T ss_pred hhccc--CCceeeeeccccCCceeeccC-------------------------------------------------CCC
Confidence 22211 22377788998877 555332 227
Q ss_pred eEEEEccCCCceecCC---C--ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCe-eEEcccCCCCC
Q 005240 158 QLVLGSLDGTAKDFGT---P--AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL-VRELCDLPPAE 231 (706)
Q Consensus 158 ~l~~~~l~g~~~~lt~---~--~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~~~ 231 (706)
+|+++|+..--++.+. . .++..++|...-.+|+-+.... ..+.+||+..++ +..+......
T Consensus 140 eI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~s------------g~~~iWDlr~~~pii~ls~~~~~- 206 (1049)
T KOG0307|consen 140 EILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPS------------GRAVIWDLRKKKPIIKLSDTPGR- 206 (1049)
T ss_pred cEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCC------------CCceeccccCCCcccccccCCCc-
Confidence 8999999652222222 1 6788999988888886554432 367899998553 3334333221
Q ss_pred CCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCc
Q 005240 232 DIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSL 311 (706)
Q Consensus 232 ~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~ 311 (706)
.....+.|.||....|+..++ +.... .|-+||+. +.+.-.+.++.+...+-.+.|++.+.
T Consensus 207 ----------~~~S~l~WhP~~aTql~~As~-dd~~P--------viqlWDlR-~assP~k~~~~H~~GilslsWc~~D~ 266 (1049)
T KOG0307|consen 207 ----------MHCSVLAWHPDHATQLLVASG-DDSAP--------VIQLWDLR-FASSPLKILEGHQRGILSLSWCPQDP 266 (1049)
T ss_pred ----------cceeeeeeCCCCceeeeeecC-CCCCc--------eeEeeccc-ccCCchhhhcccccceeeeccCCCCc
Confidence 002268999999886665532 22222 36678862 22334455667788889999999886
Q ss_pred eEEEEeeccccceEEEEEcCCCC
Q 005240 312 ALVNETWYKTSQTRTWLVCPGSK 334 (706)
Q Consensus 312 ~l~~~~~~~~~~~~l~~~d~~~~ 334 (706)
.++..+ . ...+++..|.+++
T Consensus 267 ~lllSs-g--kD~~ii~wN~~tg 286 (1049)
T KOG0307|consen 267 RLLLSS-G--KDNRIICWNPNTG 286 (1049)
T ss_pred hhhhcc-c--CCCCeeEecCCCc
Confidence 666554 2 3346888888884
|
|
| >PRK05855 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00045 Score=78.26 Aligned_cols=102 Identities=18% Similarity=0.230 Sum_probs=64.8
Q ss_pred ccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCC
Q 005240 489 RKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIG 568 (706)
Q Consensus 489 ~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g 568 (706)
..||..|..+.+-+++ .|.||++||.+.. ...| ......| +.||.|++.+.+ |
T Consensus 9 ~~~g~~l~~~~~g~~~--------~~~ivllHG~~~~-----------~~~w----~~~~~~L-~~~~~Vi~~D~~---G 61 (582)
T PRK05855 9 SSDGVRLAVYEWGDPD--------RPTVVLVHGYPDN-----------HEVW----DGVAPLL-ADRFRVVAYDVR---G 61 (582)
T ss_pred eeCCEEEEEEEcCCCC--------CCeEEEEcCCCch-----------HHHH----HHHHHHh-hcceEEEEecCC---C
Confidence 3488888877664321 3679999996421 1111 1233444 689999986655 5
Q ss_pred CCCCCCc----hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHh
Q 005240 569 EGDKLPN----DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAH 622 (706)
Q Consensus 569 ~g~~~~~----~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~ 622 (706)
+|.+... ........+|+..+++.+. + ..++.++||||||.+++.++.+
T Consensus 62 ~G~S~~~~~~~~~~~~~~a~dl~~~i~~l~----~-~~~~~lvGhS~Gg~~a~~~a~~ 114 (582)
T PRK05855 62 AGRSSAPKRTAAYTLARLADDFAAVIDAVS----P-DRPVHLLAHDWGSIQGWEAVTR 114 (582)
T ss_pred CCCCCCCCcccccCHHHHHHHHHHHHHHhC----C-CCcEEEEecChHHHHHHHHHhC
Confidence 5555332 1235567778888777652 1 2349999999999988777765
|
|
| >KOG4667 consensus Predicted esterase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0013 Score=60.43 Aligned_cols=131 Identities=11% Similarity=0.022 Sum_probs=82.3
Q ss_pred ceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEE
Q 005240 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 560 (706)
Q Consensus 481 ~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~ 560 (706)
....+.++.+.+..+-+.+..-. . --++|++||- +.. .........+..+.+.||.++.
T Consensus 9 ~~~~ivi~n~~ne~lvg~lh~tg-----s---~e~vvlcHGf-----------rS~--Kn~~~~~~vA~~~e~~gis~fR 67 (269)
T KOG4667|consen 9 IAQKIVIPNSRNEKLVGLLHETG-----S---TEIVVLCHGF-----------RSH--KNAIIMKNVAKALEKEGISAFR 67 (269)
T ss_pred eeeEEEeccCCCchhhcceeccC-----C---ceEEEEeecc-----------ccc--cchHHHHHHHHHHHhcCceEEE
Confidence 34455555555555555444221 1 3588899983 111 0111112345667789999998
Q ss_pred cCCCCcCCCCCCCCchh--hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCC
Q 005240 561 GPSIPIIGEGDKLPNDR--FVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYN 638 (706)
Q Consensus 561 ~~~~~~~g~g~~~~~~~--~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d 638 (706)
.+.+|.|++...-. .++..++|+..+++++..... .-=.|.|||-||-.++..+.++.+ ++-++..+|.+|
T Consensus 68 ---fDF~GnGeS~gsf~~Gn~~~eadDL~sV~q~~s~~nr---~v~vi~gHSkGg~Vvl~ya~K~~d-~~~viNcsGRyd 140 (269)
T KOG4667|consen 68 ---FDFSGNGESEGSFYYGNYNTEADDLHSVIQYFSNSNR---VVPVILGHSKGGDVVLLYASKYHD-IRNVINCSGRYD 140 (269)
T ss_pred ---EEecCCCCcCCccccCcccchHHHHHHHHHHhccCce---EEEEEEeecCccHHHHHHHHhhcC-chheEEcccccc
Confidence 44446666644322 233456999999999975322 123689999999999999999955 777888888776
Q ss_pred C
Q 005240 639 K 639 (706)
Q Consensus 639 ~ 639 (706)
.
T Consensus 141 l 141 (269)
T KOG4667|consen 141 L 141 (269)
T ss_pred h
Confidence 3
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.012 Score=55.80 Aligned_cols=222 Identities=13% Similarity=0.071 Sum_probs=122.1
Q ss_pred cceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcC-------CCc-eee
Q 005240 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAE-------TGE-AKP 76 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~-------~g~-~~~ 76 (706)
.++.++|+.. |+..-. .+.+..+...-||++|..++++... .+ .....|.+.++. +.+ ..+
T Consensus 74 ~t~kLWDv~t----Gk~la~--~k~~~~Vk~~~F~~~gn~~l~~tD~---~m--g~~~~v~~fdi~~~~~~~~s~ep~~k 142 (327)
T KOG0643|consen 74 QTAKLWDVET----GKQLAT--WKTNSPVKRVDFSFGGNLILASTDK---QM--GYTCFVSVFDIRDDSSDIDSEEPYLK 142 (327)
T ss_pred ceeEEEEcCC----CcEEEE--eecCCeeEEEeeccCCcEEEEEehh---hc--CcceEEEEEEccCChhhhcccCceEE
Confidence 4678899976 765544 4566668889999999999998741 11 334556666665 333 233
Q ss_pred cccCCCccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhccc
Q 005240 77 LFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTT 156 (706)
Q Consensus 77 lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 156 (706)
|...... +....|+|-|+.|+..-. .
T Consensus 143 I~t~~sk-----it~a~Wg~l~~~ii~Ghe-------------------------------------------------~ 168 (327)
T KOG0643|consen 143 IPTPDSK-----ITSALWGPLGETIIAGHE-------------------------------------------------D 168 (327)
T ss_pred ecCCccc-----eeeeeecccCCEEEEecC-------------------------------------------------C
Confidence 3222221 456789999998876421 1
Q ss_pred ceEEEEcc-CC-Cceec-CCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEE--cccCCCC
Q 005240 157 AQLVLGSL-DG-TAKDF-GTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRE--LCDLPPA 230 (706)
Q Consensus 157 ~~l~~~~l-~g-~~~~l-t~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--l~~~~~~ 230 (706)
+.|-.+|+ +| +...- ... ..+..+.+|||..+.+-.+.+. +..++|..+-.+.+ .+..+.
T Consensus 169 G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dt-------------takl~D~~tl~v~Kty~te~Pv- 234 (327)
T KOG0643|consen 169 GSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDT-------------TAKLVDVRTLEVLKTYTTERPV- 234 (327)
T ss_pred CcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCc-------------cceeeeccceeeEEEeeecccc-
Confidence 45666677 55 33222 122 4677899999998876555442 45667766443322 122221
Q ss_pred CCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCcc--------ceeeeecCCCCCCCCceEEeecccccc
Q 005240 231 EDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPR--------DIIYTQPAEPAEGEKPEILHKLDLRFR 302 (706)
Q Consensus 231 ~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~--------~~l~~~d~~~~~~~~~~~l~~~~~~~~ 302 (706)
...+.+|--.. ++. .+|.....+... .+.|-.=. -.+.-++..+-+.++
T Consensus 235 --------------N~aaisP~~d~-Vil----gGGqeA~dVTTT~~r~GKFEArFyh~i~----eEEigrvkGHFGPIN 291 (327)
T KOG0643|consen 235 --------------NTAAISPLLDH-VIL----GGGQEAMDVTTTSTRAGKFEARFYHLIF----EEEIGRVKGHFGPIN 291 (327)
T ss_pred --------------cceecccccce-EEe----cCCceeeeeeeecccccchhhhHHHHHH----HHHhccccccccCcc
Confidence 13356665443 221 222211110000 00000000 012334555677889
Q ss_pred cceecCCCceEEEEeeccccceEEEEEc
Q 005240 303 SVSWCDDSLALVNETWYKTSQTRTWLVC 330 (706)
Q Consensus 303 ~~~wspDg~~l~~~~~~~~~~~~l~~~d 330 (706)
.++++|||+.... ..+++..+|...|
T Consensus 292 svAfhPdGksYsS--GGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 292 SVAFHPDGKSYSS--GGEDGYVRLHHFD 317 (327)
T ss_pred eeEECCCCccccc--CCCCceEEEEEec
Confidence 9999999996553 2344666776665
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0045 Score=65.90 Aligned_cols=126 Identities=15% Similarity=0.159 Sum_probs=80.6
Q ss_pred CCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCce-eecccCCCccccccccceEEecCCcEEEEEec
Q 005240 28 PDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-KPLFESPDICLNAVFGSFVWVNNSTLLIFTIP 106 (706)
Q Consensus 28 ~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~-~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~ 106 (706)
++...++..++||||++||+.. -....||.+..+.... +.+-..+.. .-....+.++-|+..+++.+.
T Consensus 380 k~~~nIs~~aiSPdg~~Ia~st---------~~~~~iy~L~~~~~vk~~~v~~~~~~--~~~a~~i~ftid~~k~~~~s~ 448 (691)
T KOG2048|consen 380 KEKENISCAAISPDGNLIAIST---------VSRTKIYRLQPDPNVKVINVDDVPLA--LLDASAISFTIDKNKLFLVSK 448 (691)
T ss_pred CCccceeeeccCCCCCEEEEee---------ccceEEEEeccCcceeEEEeccchhh--hccceeeEEEecCceEEEEec
Confidence 4455788899999999999976 3346788777765221 112111111 111345677888877766641
Q ss_pred CCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCC----CceecCCC---ceEee
Q 005240 107 SSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG----TAKDFGTP---AVYTA 179 (706)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g----~~~~lt~~---~~~~~ 179 (706)
...+|..+++++ +...+... +.+..
T Consensus 449 ------------------------------------------------~~~~le~~el~~ps~kel~~~~~~~~~~~I~~ 480 (691)
T KOG2048|consen 449 ------------------------------------------------NIFSLEEFELETPSFKELKSIQSQAKCPSISR 480 (691)
T ss_pred ------------------------------------------------ccceeEEEEecCcchhhhhccccccCCCccee
Confidence 114566666632 22222222 57789
Q ss_pred eeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcc
Q 005240 180 VEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELC 225 (706)
Q Consensus 180 ~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 225 (706)
+..||||++|+..+.. ..|++|++.+.+-+.|.
T Consensus 481 l~~SsdG~yiaa~~t~-------------g~I~v~nl~~~~~~~l~ 513 (691)
T KOG2048|consen 481 LVVSSDGNYIAAISTR-------------GQIFVYNLETLESHLLK 513 (691)
T ss_pred EEEcCCCCEEEEEecc-------------ceEEEEEcccceeecch
Confidence 9999999999988855 38999999988777665
|
|
| >TIGR03502 lipase_Pla1_cef extracellular lipase, Pla-1/cef family | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00054 Score=77.09 Aligned_cols=93 Identities=17% Similarity=0.120 Sum_probs=61.8
Q ss_pred ceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCC-CC-----------------
Q 005240 513 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDK-LP----------------- 574 (706)
Q Consensus 513 ~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~-~~----------------- 574 (706)
.|+||++||-.. .......++..|+++||.|+.++.+ |+|++ +.
T Consensus 449 ~P~VVllHG~~g---------------~~~~~~~lA~~La~~Gy~VIaiDlp---GHG~S~~~~~~~~~~a~~~~~~~y~ 510 (792)
T TIGR03502 449 WPVVIYQHGITG---------------AKENALAFAGTLAAAGVATIAIDHP---LHGARSFDANASGVNATNANVLAYM 510 (792)
T ss_pred CcEEEEeCCCCC---------------CHHHHHHHHHHHHhCCcEEEEeCCC---CCCccccccccccccccccCcccee
Confidence 589999999421 1111124566788899999985543 23333 11
Q ss_pred c-------hhhHHHHHHHHHHHHHHHH------Hc----CCCCCCcEEEEEechHHHHHHHHHHhC
Q 005240 575 N-------DRFVEQLVSSAEAAVEEVV------RR----GVADPSRIAVGGHSYGAFMTAHLLAHA 623 (706)
Q Consensus 575 ~-------~~~~~~~~~D~~~~~~~l~------~~----~~id~~~i~i~G~S~GG~~a~~~~~~~ 623 (706)
+ ++...+.+.|+......+. ++ ...+..+|.++||||||.++..++...
T Consensus 511 Nl~~l~~aRDn~rQ~v~Dll~L~~~l~~~~~~~~~~~~~~~~~~~~V~~lGHSLGgiig~~~~~~a 576 (792)
T TIGR03502 511 NLASLLVARDNLRQSILDLLGLRLSLNGSALAGAPLSGINVIDGSKVSFLGHSLGGIVGTSFIAYA 576 (792)
T ss_pred ccccccccccCHHHHHHHHHHHHHHHhcccccccccccccCCCCCcEEEEecCHHHHHHHHHHHhc
Confidence 0 1234677888888877776 21 125678999999999999999998764
|
Members of this protein family are bacterial lipoproteins largely from the Gammaproteobacteria. Characterized members are expressed in extracellularly and have esterase activity. Members include the lipase Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell elongation factor (cef) from Vibrio hollisae |
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.11 Score=53.97 Aligned_cols=149 Identities=9% Similarity=0.128 Sum_probs=86.7
Q ss_pred ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCC-eeEEcccCCCCCCCCcccCccCCCCcceeeecCC
Q 005240 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK-LVRELCDLPPAEDIPVCYNSVREGMRSISWRADK 253 (706)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg 253 (706)
.....++..|+...++-.... ..+.+|+ +.+ +-.++...+ .....|.|.|
T Consensus 369 delwgla~hps~~q~~T~gqd-------------k~v~lW~-~~k~~wt~~~~d~---------------~~~~~fhpsg 419 (626)
T KOG2106|consen 369 DELWGLATHPSKNQLLTCGQD-------------KHVRLWN-DHKLEWTKIIEDP---------------AECADFHPSG 419 (626)
T ss_pred cceeeEEcCCChhheeeccCc-------------ceEEEcc-CCceeEEEEecCc---------------eeEeeccCcc
Confidence 456677888887766533322 4788888 221 112222222 2245788888
Q ss_pred CceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCC
Q 005240 254 PSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (706)
Q Consensus 254 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~ 333 (706)
. |+.-. ..++++++|. ++..+.++......++-+.++|||..|+..+ +++..-||+++.++
T Consensus 420 -~-va~Gt------------~~G~w~V~d~---e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs--~d~~iyiy~Vs~~g 480 (626)
T KOG2106|consen 420 -V-VAVGT------------ATGRWFVLDT---ETQDLVTIHTDNEQLSVVRYSPDGAFLAVGS--HDNHIYIYRVSANG 480 (626)
T ss_pred -e-EEEee------------ccceEEEEec---ccceeEEEEecCCceEEEEEcCCCCEEEEec--CCCeEEEEEECCCC
Confidence 3 55321 1235788888 5555555655578888999999999999875 33344466666655
Q ss_pred CCCCceeeecCcccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEE
Q 005240 334 KDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILL 383 (706)
Q Consensus 334 ~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~ 383 (706)
. ....+-.-....+ ..+-||+|++++.... .+...+|+
T Consensus 481 ~--~y~r~~k~~gs~i------thLDwS~Ds~~~~~~S----~d~eiLyW 518 (626)
T KOG2106|consen 481 R--KYSRVGKCSGSPI------THLDWSSDSQFLVSNS----GDYEILYW 518 (626)
T ss_pred c--EEEEeeeecCcee------EEeeecCCCceEEecc----CceEEEEE
Confidence 3 2222211111111 1256999999987765 34555665
|
|
| >PF05677 DUF818: Chlamydia CHLPS protein (DUF818); InterPro: IPR008536 This family of unknown function includes several Chlamydia CHLPS proteins and Legionella SidB proteins | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0029 Score=62.88 Aligned_cols=125 Identities=17% Similarity=0.096 Sum_probs=80.8
Q ss_pred CceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHH-HCCeEE
Q 005240 480 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFL-ARRFAV 558 (706)
Q Consensus 480 ~~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~G~~v 558 (706)
...+.+.++. |+..|....+.-+++.++ .-||+.-|..... ..-. .-.......+.++ +.|..|
T Consensus 110 ~~~kRv~Iq~-D~~~IDt~~I~~~~a~~~-----RWiL~s~GNg~~~--------E~~~-~~~~~~~~~~~~ak~~~aNv 174 (365)
T PF05677_consen 110 SSVKRVPIQY-DGVKIDTMAIHQPEAKPQ-----RWILVSNGNGECY--------ENRA-MLDYKDDWIQRFAKELGANV 174 (365)
T ss_pred cceeeEEEee-CCEEEEEEEeeCCCCCCC-----cEEEEEcCChHHh--------hhhh-hhccccHHHHHHHHHcCCcE
Confidence 3667777876 999999888774443333 3566666542110 0000 0000112344455 478888
Q ss_pred EEcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcC-CCCCCcEEEEEechHHHHHHHHHHhC
Q 005240 559 LAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRG-VADPSRIAVGGHSYGAFMTAHLLAHA 623 (706)
Q Consensus 559 ~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~-~id~~~i~i~G~S~GG~~a~~~~~~~ 623 (706)
+.-||+ |.|.+..... .++.+.|..+.++||.++. -+.+++|+++|||.||.++..++...
T Consensus 175 l~fNYp---GVg~S~G~~s-~~dLv~~~~a~v~yL~d~~~G~ka~~Ii~yG~SLGG~Vqa~AL~~~ 236 (365)
T PF05677_consen 175 LVFNYP---GVGSSTGPPS-RKDLVKDYQACVRYLRDEEQGPKAKNIILYGHSLGGGVQAEALKKE 236 (365)
T ss_pred EEECCC---ccccCCCCCC-HHHHHHHHHHHHHHHHhcccCCChheEEEeeccccHHHHHHHHHhc
Confidence 886775 4555533333 5888999999999999754 37889999999999999988765543
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.015 Score=57.64 Aligned_cols=166 Identities=16% Similarity=0.064 Sum_probs=91.2
Q ss_pred ccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCCCc
Q 005240 89 FGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTA 168 (706)
Q Consensus 89 ~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g~~ 168 (706)
..++++|+||+.+++.... . ....|++...++..
T Consensus 26 ~~s~AvS~dg~~~A~v~~~--~--------------------------------------------~~~~L~~~~~~~~~ 59 (253)
T PF10647_consen 26 VTSPAVSPDGSRVAAVSEG--D--------------------------------------------GGRSLYVGPAGGPV 59 (253)
T ss_pred ccceEECCCCCeEEEEEEc--C--------------------------------------------CCCEEEEEcCCCcc
Confidence 6789999999999988611 1 22688988887766
Q ss_pred eecCCCceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCe-eEEcccCCCCCCCCcccCccCCCCcce
Q 005240 169 KDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL-VRELCDLPPAEDIPVCYNSVREGMRSI 247 (706)
Q Consensus 169 ~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~~~~~p~~~~~~~~g~~~~ 247 (706)
..+..+.....+.|+++|. +++....... ..+.....++.. ...+...... ..+..+
T Consensus 60 ~~~~~g~~l~~PS~d~~g~-~W~v~~~~~~----------~~~~~~~~~g~~~~~~v~~~~~~-----------~~I~~l 117 (253)
T PF10647_consen 60 RPVLTGGSLTRPSWDPDGW-VWTVDDGSGG----------VRVVRDSASGTGEPVEVDWPGLR-----------GRITAL 117 (253)
T ss_pred eeeccCCccccccccCCCC-EEEEEcCCCc----------eEEEEecCCCcceeEEecccccC-----------CceEEE
Confidence 6655556788999999965 4444333211 122221222222 2222111110 014478
Q ss_pred eeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEe-------ecccccccceecCCCceEEEEeecc
Q 005240 248 SWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH-------KLDLRFRSVSWCDDSLALVNETWYK 320 (706)
Q Consensus 248 ~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~-------~~~~~~~~~~wspDg~~l~~~~~~~ 320 (706)
.+||||.+ ++++....++. .|++.-+.--..+.+..|. .....+..+.|++++..++......
T Consensus 118 ~vSpDG~R-vA~v~~~~~~~---------~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~ 187 (253)
T PF10647_consen 118 RVSPDGTR-VAVVVEDGGGG---------RVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAG 187 (253)
T ss_pred EECCCCcE-EEEEEecCCCC---------eEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEeCCCC
Confidence 99999999 77775333222 2444433100233233332 2234667899999998776654322
Q ss_pred ccceEEEEEcCCCC
Q 005240 321 TSQTRTWLVCPGSK 334 (706)
Q Consensus 321 ~~~~~l~~~d~~~~ 334 (706)
..... .+..+++
T Consensus 188 -~~~~~-~v~~dG~ 199 (253)
T PF10647_consen 188 -GPVVR-LVSVDGG 199 (253)
T ss_pred -CceeE-EEEccCC
Confidence 22222 4666653
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0051 Score=59.32 Aligned_cols=205 Identities=13% Similarity=0.112 Sum_probs=117.8
Q ss_pred CCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCC
Q 005240 29 DGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSS 108 (706)
Q Consensus 29 ~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~ 108 (706)
+-..+....|.|.|.+|+.. .....+.++|+++-+.-.-.. +.....+.+..+.+|+.|+. |.+...
T Consensus 215 d~~~vrsiSfHPsGefllvg----------TdHp~~rlYdv~T~Qcfvsan-Pd~qht~ai~~V~Ys~t~~l-YvTaSk- 281 (430)
T KOG0640|consen 215 DTEPVRSISFHPSGEFLLVG----------TDHPTLRLYDVNTYQCFVSAN-PDDQHTGAITQVRYSSTGSL-YVTASK- 281 (430)
T ss_pred ccceeeeEeecCCCceEEEe----------cCCCceeEEeccceeEeeecC-cccccccceeEEEecCCccE-EEEecc-
Confidence 33468889999999999875 345678888888766543222 33223334678899999985 444211
Q ss_pred CCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCCc-eecCCC---ceEeeeeeC
Q 005240 109 RRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTA-KDFGTP---AVYTAVEPS 183 (706)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~-~~lt~~---~~~~~~~~S 183 (706)
.+.|-++|- .++. +.+... ..+.+..|+
T Consensus 282 -----------------------------------------------DG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ft 314 (430)
T KOG0640|consen 282 -----------------------------------------------DGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFT 314 (430)
T ss_pred -----------------------------------------------CCcEEeeccccHHHHHHHHhhcCCceeeeEEEc
Confidence 145555554 4432 222222 578899999
Q ss_pred CCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCC-cccCccCCCCcceeeecCCCceEEEEEe
Q 005240 184 PDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIP-VCYNSVREGMRSISWRADKPSTLYWVEA 262 (706)
Q Consensus 184 pDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p-~~~~~~~~g~~~~~~spdg~~~l~~~~~ 262 (706)
.+||+|+-+..+ +.+.+|.+.++...+...+.+..+.- .....+-+....+...||...
T Consensus 315 kn~kyiLsSG~D-------------S~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas------- 374 (430)
T KOG0640|consen 315 KNGKYILSSGKD-------------STVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEAS------- 374 (430)
T ss_pred cCCeEEeecCCc-------------ceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEcccccc-------
Confidence 999999744433 47899999877654444444322110 000000011123334444332
Q ss_pred ccCCCCccccCccceeeeecCCCCCCCCceEEe--ecccccccceecCCCceEEEEeeccccceEEEEEcC
Q 005240 263 QDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH--KLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCP 331 (706)
Q Consensus 263 ~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~--~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~ 331 (706)
..++.||. .++..+.|. .+.+.+..+.-||.+..++..++ +...+.|.-..
T Consensus 375 -------------~slcsWda---Rtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsd--D~raRFWyrr~ 427 (430)
T KOG0640|consen 375 -------------NSLCSWDA---RTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSD--DFRARFWYRRV 427 (430)
T ss_pred -------------Cceeeccc---cchhhhhhcccCCCCCceEEEeCCCCCceeeecc--cceeeeeeecc
Confidence 13667777 455555543 34666667777898887776543 23456665543
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.003 Score=63.31 Aligned_cols=122 Identities=14% Similarity=0.149 Sum_probs=80.4
Q ss_pred EEEEcc-CCCc-eecCCCceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcc
Q 005240 159 LVLGSL-DGTA-KDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVC 236 (706)
Q Consensus 159 l~~~~l-~g~~-~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~ 236 (706)
|-.+|. .+.. +.+.-++.+.++..|+||..|...+ +. ..+-++|+.+.+++......+.....
T Consensus 324 vRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsss-RD------------dtl~viDlRt~eI~~~~sA~g~k~as-- 388 (459)
T KOG0288|consen 324 VRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSS-RD------------DTLKVIDLRTKEIRQTFSAEGFKCAS-- 388 (459)
T ss_pred eEEEeccCCceeeEeecCcceeeEeeccCCeEEeeec-CC------------CceeeeecccccEEEEeecccccccc--
Confidence 555565 3333 3333347889999999999987553 32 36888999999888876665432111
Q ss_pred cCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeec---ccccccceecCCCceE
Q 005240 237 YNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL---DLRFRSVSWCDDSLAL 313 (706)
Q Consensus 237 ~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~---~~~~~~~~wspDg~~l 313 (706)
+ .....||||+.. ++ .++ ..+.||+|++ .+++.+..... +..+...+|.|-|..+
T Consensus 389 -----D-wtrvvfSpd~~Y-va-----AGS-------~dgsv~iW~v---~tgKlE~~l~~s~s~~aI~s~~W~~sG~~L 446 (459)
T KOG0288|consen 389 -----D-WTRVVFSPDGSY-VA-----AGS-------ADGSVYIWSV---FTGKLEKVLSLSTSNAAITSLSWNPSGSGL 446 (459)
T ss_pred -----c-cceeEECCCCce-ee-----ecc-------CCCcEEEEEc---cCceEEEEeccCCCCcceEEEEEcCCCchh
Confidence 1 125689999986 32 111 1235999999 77877665432 2358899999999988
Q ss_pred EEEe
Q 005240 314 VNET 317 (706)
Q Consensus 314 ~~~~ 317 (706)
+..+
T Consensus 447 lsad 450 (459)
T KOG0288|consen 447 LSAD 450 (459)
T ss_pred hccc
Confidence 8654
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.071 Score=62.67 Aligned_cols=207 Identities=14% Similarity=0.129 Sum_probs=101.5
Q ss_pred ceEEEE----ccCC-CceecCCC-ceEeeeeeCCCCcEEEEEeeccCc-----cccc----ccc-cccceEEEEecC-CC
Q 005240 157 AQLVLG----SLDG-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPY-----SYKV----PCA-RFSQKVQVWTTD-GK 219 (706)
Q Consensus 157 ~~l~~~----~l~g-~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~-----~~~~----~~~-~~~~~i~~~~~~-~~ 219 (706)
++|.++ +.+. ....+..- ..+.+++||||+..|++....+.- .+.+ +.. .....-.-+++. |+
T Consensus 97 Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGk 176 (928)
T PF04762_consen 97 GDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGK 176 (928)
T ss_pred ceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCc
Confidence 677777 4432 44444333 578899999999999988765310 0000 000 000111122333 33
Q ss_pred eeEEcccCCCCC-----CCCc------ccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCC
Q 005240 220 LVRELCDLPPAE-----DIPV------CYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEG 288 (706)
Q Consensus 220 ~~~~l~~~~~~~-----~~p~------~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 288 (706)
+.++.-...+.. ..|. ...+..++.-.++|+.||.. ++......... .+..+.+++. +
T Consensus 177 KeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~y-FAVss~~~~~~------~~R~iRVy~R---e- 245 (928)
T PF04762_consen 177 KETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEY-FAVSSVEPETG------SRRVIRVYSR---E- 245 (928)
T ss_pred ccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcE-EEEEEEEcCCC------ceeEEEEECC---C-
Confidence 322221110000 0111 00111234458999999986 44322111111 1224777776 3
Q ss_pred CCceEEe-ecccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceee-ecCcccccccCCCCCceEeccCCCE
Q 005240 289 EKPEILH-KLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVL-FDRVFENVYSDPGSPMMTRTSTGTN 366 (706)
Q Consensus 289 ~~~~~l~-~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~s~dg~~ 366 (706)
|+..... ..++-...++|.|.|..|+.... ......|..+..+|-....-.| ++.. ....-.+.|++|+..
T Consensus 246 G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~-~~~~~~VvFfErNGLrhgeF~l~~~~~------~~~v~~l~Wn~ds~i 318 (928)
T PF04762_consen 246 GELQSTSEPVDGLEGALSWRPSGNLIASSQR-LPDRHDVVFFERNGLRHGEFTLRFDPE------EEKVIELAWNSDSEI 318 (928)
T ss_pred ceEEeccccCCCccCCccCCCCCCEEEEEEE-cCCCcEEEEEecCCcEeeeEecCCCCC------CceeeEEEECCCCCE
Confidence 4443332 33566678899999998887653 3344556666555521110111 1000 011235889999999
Q ss_pred EEEeeeccCCcceEEEEec
Q 005240 367 VIAKIKKENDEQIYILLNG 385 (706)
Q Consensus 367 l~~~~~~~~~~~~~~~~~~ 385 (706)
|++... +...+|..+
T Consensus 319 LAv~~~----~~vqLWt~~ 333 (928)
T PF04762_consen 319 LAVWLE----DRVQLWTRS 333 (928)
T ss_pred EEEEec----CCceEEEee
Confidence 988662 234455443
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0023 Score=63.02 Aligned_cols=226 Identities=16% Similarity=0.176 Sum_probs=127.3
Q ss_pred ceeEeecCCCCCCCC-eeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCC-ceeecccCCCc
Q 005240 6 GIGIHRLLPDDSLGP-EKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETG-EAKPLFESPDI 83 (706)
Q Consensus 6 ~~~~~~~~~~~~~g~-~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g-~~~~lt~~~~~ 83 (706)
+|++.|..+ |+ ++-+++.... +..+.++..|+.||-.+. +-..+|| |.++- +..+...+.+.
T Consensus 131 tikv~D~~t----g~~e~~LrGHt~s--v~di~~~a~Gk~l~tcSs--------Dl~~~LW--d~~~~~~c~ks~~gh~h 194 (406)
T KOG0295|consen 131 TIKVFDTET----GELERSLRGHTDS--VFDISFDASGKYLATCSS--------DLSAKLW--DFDTFFRCIKSLIGHEH 194 (406)
T ss_pred eEEEEEccc----hhhhhhhhccccc--eeEEEEecCccEEEecCC--------ccchhhe--eHHHHHHHHHHhcCccc
Confidence 466677755 43 3445555555 888999999999988764 2224444 55442 22222222222
Q ss_pred cccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEc
Q 005240 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (706)
Q Consensus 84 ~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~ 163 (706)
+++.+.+-|-|.+|+..+.+ ..+..++
T Consensus 195 ----~vS~V~f~P~gd~ilS~srD-------------------------------------------------~tik~We 221 (406)
T KOG0295|consen 195 ----GVSSVFFLPLGDHILSCSRD-------------------------------------------------NTIKAWE 221 (406)
T ss_pred ----ceeeEEEEecCCeeeecccc-------------------------------------------------cceeEEe
Confidence 37888899999887765421 4567777
Q ss_pred c-CC-CceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCcc
Q 005240 164 L-DG-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240 (706)
Q Consensus 164 l-~g-~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~ 240 (706)
+ +| ....++.. .-+..++.+-||..|+--++. ..+.+|-+.+++-+.+....- .|
T Consensus 222 ~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~d-------------qtl~vW~~~t~~~k~~lR~hE---h~------ 279 (406)
T KOG0295|consen 222 CDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSND-------------QTLRVWVVATKQCKAELREHE---HP------ 279 (406)
T ss_pred cccceeEEeccCchHhEEEEEecCCeeEEEecCCC-------------ceEEEEEeccchhhhhhhccc---cc------
Confidence 7 56 45555555 667888889999777644433 478888888764333322210 01
Q ss_pred CCCCcceeeecCCCce-EEEEEeccCCCCcccc-CccceeeeecCCCCCCCC-ceEEeecccccccceecCCCceEEEEe
Q 005240 241 REGMRSISWRADKPST-LYWVEAQDRGDANVEV-SPRDIIYTQPAEPAEGEK-PEILHKLDLRFRSVSWCDDSLALVNET 317 (706)
Q Consensus 241 ~~g~~~~~~spdg~~~-l~~~~~~~~~~~~~~~-~~~~~l~~~d~~~~~~~~-~~~l~~~~~~~~~~~wspDg~~l~~~~ 317 (706)
+.-++|.|..... +-......++.+.... .....|..||+ .++. +-.|..+..-+..++|+|.|++|+..+
T Consensus 280 ---vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv---~tg~cL~tL~ghdnwVr~~af~p~Gkyi~Sca 353 (406)
T KOG0295|consen 280 ---VECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDV---STGMCLFTLVGHDNWVRGVAFSPGGKYILSCA 353 (406)
T ss_pred ---eEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEec---cCCeEEEEEecccceeeeeEEcCCCeEEEEEe
Confidence 2234555543210 0001000001111111 11235888888 4442 334556778899999999999999876
Q ss_pred eccccceEEEEEc
Q 005240 318 WYKTSQTRTWLVC 330 (706)
Q Consensus 318 ~~~~~~~~l~~~d 330 (706)
+++ ..++|-+.
T Consensus 354 DDk--tlrvwdl~ 364 (406)
T KOG0295|consen 354 DDK--TLRVWDLK 364 (406)
T ss_pred cCC--cEEEEEec
Confidence 433 44455443
|
|
| >KOG2112 consensus Lysophospholipase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0025 Score=58.82 Aligned_cols=90 Identities=21% Similarity=0.223 Sum_probs=67.0
Q ss_pred CCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCCCCC------------CCcc------------chHHHHHHH
Q 005240 599 ADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTL------------TPFG------------FQAERFFDA 654 (706)
Q Consensus 599 id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d~~~------------~~~~------------~~~~~~~~~ 654 (706)
|+++||+|.|+|+||.++++++..+|-......+..+...... +|.. .-.++..+.
T Consensus 90 i~~~rI~igGfs~G~a~aL~~~~~~~~~l~G~~~~s~~~p~~~~~~~~~~~~~~~~~i~~~Hg~~d~~vp~~~g~~s~~~ 169 (206)
T KOG2112|consen 90 IPSNRIGIGGFSQGGALALYSALTYPKALGGIFALSGFLPRASIGLPGWLPGVNYTPILLCHGTADPLVPFRFGEKSAQF 169 (206)
T ss_pred CCccceeEcccCchHHHHHHHHhccccccceeeccccccccchhhccCCccccCcchhheecccCCceeehHHHHHHHHH
Confidence 7889999999999999999999999665666666665543110 1110 012377788
Q ss_pred HHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 005240 655 LKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQK 693 (706)
Q Consensus 655 l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~~~ 693 (706)
|+..+..+++..|+|.+|.... +.+..+..|+++
T Consensus 170 l~~~~~~~~f~~y~g~~h~~~~-----~e~~~~~~~~~~ 203 (206)
T KOG2112|consen 170 LKSLGVRVTFKPYPGLGHSTSP-----QELDDLKSWIKT 203 (206)
T ss_pred HHHcCCceeeeecCCccccccH-----HHHHHHHHHHHH
Confidence 8888888999999999998763 567788888877
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0039 Score=61.71 Aligned_cols=134 Identities=14% Similarity=0.135 Sum_probs=84.0
Q ss_pred cceeEeecCCCCCCCCeeeeecCCCC----CcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecc-c
Q 005240 5 TGIGIHRLLPDDSLGPEKEVHGYPDG----AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLF-E 79 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~i~~~~~~----~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt-~ 79 (706)
-.|||+|+. ..+.+.++.+- ........++++.+|||=..+ ...+|.++|+.+-+..-.. .
T Consensus 106 e~IyIydI~------~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~--------t~GdV~l~d~~nl~~v~~I~a 171 (391)
T KOG2110|consen 106 ESIYIYDIK------DMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGST--------TSGDVVLFDTINLQPVNTINA 171 (391)
T ss_pred ccEEEEecc------cceeehhhhccCCCccceEeeccCCCCceEEecCCC--------CCceEEEEEcccceeeeEEEe
Confidence 358999994 45555443322 235555666777799996542 3468888887654433222 2
Q ss_pred CCCccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceE
Q 005240 80 SPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQL 159 (706)
Q Consensus 80 ~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l 159 (706)
+.+ .+..+++|+||..||-.+.. .+-|
T Consensus 172 H~~-----~lAalafs~~G~llATASeK------------------------------------------------GTVI 198 (391)
T KOG2110|consen 172 HKG-----PLAALAFSPDGTLLATASEK------------------------------------------------GTVI 198 (391)
T ss_pred cCC-----ceeEEEECCCCCEEEEeccC------------------------------------------------ceEE
Confidence 222 27788999999999976531 1233
Q ss_pred EEEcc-CC-CceecCCC---ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCC
Q 005240 160 VLGSL-DG-TAKDFGTP---AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG 218 (706)
Q Consensus 160 ~~~~l-~g-~~~~lt~~---~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 218 (706)
-++.+ +| +...+-.+ -.+..++||||++.|..+++.. .|.++-++.
T Consensus 199 RVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~Te-------------TVHiFKL~~ 249 (391)
T KOG2110|consen 199 RVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTE-------------TVHIFKLEK 249 (391)
T ss_pred EEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCC-------------eEEEEEecc
Confidence 33444 55 34444333 4677999999999998877653 677776663
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.029 Score=61.10 Aligned_cols=212 Identities=9% Similarity=0.006 Sum_probs=105.7
Q ss_pred ccceeeC-----CCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEE--ecCCcEEEEEe
Q 005240 33 INFVSWS-----PDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVW--VNNSTLLIFTI 105 (706)
Q Consensus 33 ~~~~~~S-----PDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~w--SpDg~~l~~~~ 105 (706)
..+|..| .||++| |+-+ .....|-+++++.-+..+|+..+... ++....+ .|+-+++++..
T Consensus 127 ~HHp~~s~t~g~ydGr~~-find--------k~n~Rvari~l~~~~~~~i~~iPn~~---~~Hg~~~~~~p~t~yv~~~~ 194 (635)
T PRK02888 127 THHPHMSFTDGTYDGRYL-FIND--------KANTRVARIRLDVMKCDKITELPNVQ---GIHGLRPQKIPRTGYVFCNG 194 (635)
T ss_pred cCCCcccccCCccceeEE-EEec--------CCCcceEEEECccEeeceeEeCCCcc---CccccCccccCCccEEEeCc
Confidence 4456655 588888 5432 34567888888887777777555321 1222222 36666666542
Q ss_pred cCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCC-Cc-eecCCCceEeeeeeC
Q 005240 106 PSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TA-KDFGTPAVYTAVEPS 183 (706)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g-~~-~~lt~~~~~~~~~~S 183 (706)
.- +. +.-+.|..+.. .. .-.+-+-.+|.+. +. .++.-++......++
T Consensus 195 e~-~~-----PlpnDGk~l~~--------~~-----------------ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~s 243 (635)
T PRK02888 195 EF-RI-----PLPNDGKDLDD--------PK-----------------KYRSLFTAVDAETMEVAWQVMVDGNLDNVDTD 243 (635)
T ss_pred cc-cc-----ccCCCCCEeec--------cc-----------------ceeEEEEEEECccceEEEEEEeCCCcccceEC
Confidence 10 00 00001110000 00 0124555666643 22 233223455678899
Q ss_pred CCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEec
Q 005240 184 PDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQ 263 (706)
Q Consensus 184 pDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~ 263 (706)
|||+++++++.+... ...+...+............ ..--.+.+||+. .+ +.
T Consensus 244 pdGk~afvTsyNsE~---------G~tl~em~a~e~d~~vvfni----------------~~iea~vkdGK~-~~-V~-- 294 (635)
T PRK02888 244 YDGKYAFSTCYNSEE---------GVTLAEMMAAERDWVVVFNI----------------ARIEEAVKAGKF-KT-IG-- 294 (635)
T ss_pred CCCCEEEEeccCccc---------CcceeeeccccCceEEEEch----------------HHHHHhhhCCCE-EE-EC--
Confidence 999999888743321 12333333321111110000 001145667775 33 21
Q ss_pred cCCCCccccCccceeeeecCCCCCC-----CCceEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCC
Q 005240 264 DRGDANVEVSPRDIIYTQPAEPAEG-----EKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (706)
Q Consensus 264 ~~~~~~~~~~~~~~l~~~d~~~~~~-----~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~ 333 (706)
+ +.+-++|. .. .+.............+..||||++++.... ....+-++|++.
T Consensus 295 --g---------n~V~VID~---~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVank---lS~tVSVIDv~k 352 (635)
T PRK02888 295 --G---------SKVPVVDG---RKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGK---LSPTVTVIDVRK 352 (635)
T ss_pred --C---------CEEEEEEC---CccccCCcceEEEEECCCCccceEECCCCCEEEEeCC---CCCcEEEEEChh
Confidence 1 13556666 33 223333345666778899999999998642 233577788776
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.24 Score=54.69 Aligned_cols=218 Identities=13% Similarity=-0.001 Sum_probs=111.5
Q ss_pred ccceEEEEccC----CCceecCC----C-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcc
Q 005240 155 TTAQLVLGSLD----GTAKDFGT----P-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELC 225 (706)
Q Consensus 155 ~~~~l~~~~l~----g~~~~lt~----~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 225 (706)
+...++.++.. |+...-+. . ....+++.|+-|+..+..... ..|.+||++++-.+.-.
T Consensus 420 ~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~-------------G~Id~fNmQSGi~r~sf 486 (910)
T KOG1539|consen 420 GKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSK-------------GTIDRFNMQSGIHRKSF 486 (910)
T ss_pred CcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccC-------------CeEEEEEcccCeeeccc
Confidence 44677777772 22221111 2 467789999999988765544 37899999987655432
Q ss_pred cCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccce
Q 005240 226 DLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVS 305 (706)
Q Consensus 226 ~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~ 305 (706)
....+...+ + ...+-|+...+...... .+.+..||. ..+.+..-.........+.
T Consensus 487 ~~~~ah~~~---------V--~gla~D~~n~~~vsa~~-----------~Gilkfw~f---~~k~l~~~l~l~~~~~~iv 541 (910)
T KOG1539|consen 487 GDSPAHKGE---------V--TGLAVDGTNRLLVSAGA-----------DGILKFWDF---KKKVLKKSLRLGSSITGIV 541 (910)
T ss_pred ccCccccCc---------e--eEEEecCCCceEEEccC-----------cceEEEEec---CCcceeeeeccCCCcceee
Confidence 211111111 1 12344443323322111 123555555 2222110011111222222
Q ss_pred ecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEec
Q 005240 306 WCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNG 385 (706)
Q Consensus 306 wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~ 385 (706)
.+-....++..- ....|.++|..+.+ -.+.+ .+. +.....+.+||||+||+...-+
T Consensus 542 ~hr~s~l~a~~~----ddf~I~vvD~~t~k-vvR~f-~gh------~nritd~~FS~DgrWlisasmD------------ 597 (910)
T KOG1539|consen 542 YHRVSDLLAIAL----DDFSIRVVDVVTRK-VVREF-WGH------GNRITDMTFSPDGRWLISASMD------------ 597 (910)
T ss_pred eeehhhhhhhhc----CceeEEEEEchhhh-hhHHh-hcc------ccceeeeEeCCCCcEEEEeecC------------
Confidence 222222222211 33458888877732 12222 211 1123347889999999887521
Q ss_pred CCCCCCCCCCceeeeecCCCceeeeecccchhhhhhhhhhccCCCceecccCCCEEEEEEecCCCCcEEEEEE
Q 005240 386 RGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILS 458 (706)
Q Consensus 386 ~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~p~~v~~~~ 458 (706)
..+..+|+.+|...-....+ ....+.+|||+|..|+.++.+-+ .||+|.
T Consensus 598 ---------~tIr~wDlpt~~lID~~~vd------------~~~~sls~SPngD~LAT~Hvd~~---gIylWs 646 (910)
T KOG1539|consen 598 ---------STIRTWDLPTGTLIDGLLVD------------SPCTSLSFSPNGDFLATVHVDQN---GIYLWS 646 (910)
T ss_pred ---------CcEEEEeccCcceeeeEecC------------CcceeeEECCCCCEEEEEEecCc---eEEEEE
Confidence 14667888887642222221 12336799999999998887643 488885
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0063 Score=63.11 Aligned_cols=62 Identities=10% Similarity=0.074 Sum_probs=37.7
Q ss_pred ccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEee
Q 005240 298 DLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 298 ~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 371 (706)
.+.+..+.|||||++|+..+. ++..+|+-+| + .+.+-+.+--+. |-.-+.|||||++|+..-
T Consensus 290 ~g~in~f~FS~DG~~LA~VSq--DGfLRvF~fd--t--~eLlg~mkSYFG------GLLCvcWSPDGKyIvtGG 351 (636)
T KOG2394|consen 290 EGSINEFAFSPDGKYLATVSQ--DGFLRIFDFD--T--QELLGVMKSYFG------GLLCVCWSPDGKYIVTGG 351 (636)
T ss_pred cccccceeEcCCCceEEEEec--CceEEEeecc--H--HHHHHHHHhhcc------ceEEEEEcCCccEEEecC
Confidence 447788999999999998862 2455555554 3 111111111111 122377999999998753
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.02 Score=55.98 Aligned_cols=58 Identities=5% Similarity=0.072 Sum_probs=37.8
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEE
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLI 102 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~ 102 (706)
.++..+|.||.+.|+.+. +....|+.++.+|.-.+++...... .+..+++..+|++++
T Consensus 23 e~SGLTy~pd~~tLfaV~---------d~~~~i~els~~G~vlr~i~l~g~~----D~EgI~y~g~~~~vl 80 (248)
T PF06977_consen 23 ELSGLTYNPDTGTLFAVQ---------DEPGEIYELSLDGKVLRRIPLDGFG----DYEGITYLGNGRYVL 80 (248)
T ss_dssp -EEEEEEETTTTEEEEEE---------TTTTEEEEEETT--EEEEEE-SS-S----SEEEEEE-STTEEEE
T ss_pred CccccEEcCCCCeEEEEE---------CCCCEEEEEcCCCCEEEEEeCCCCC----CceeEEEECCCEEEE
Confidence 389999999999997765 4567899999876656666433211 166788887776433
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0031 Score=63.15 Aligned_cols=117 Identities=17% Similarity=0.196 Sum_probs=78.3
Q ss_pred eeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhc
Q 005240 62 LRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNL 141 (706)
Q Consensus 62 ~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (706)
..|..+|..++..++-....+. +.++..++||..|...+++
T Consensus 322 kkvRfwD~Rs~~~~~sv~~gg~-----vtSl~ls~~g~~lLsssRD---------------------------------- 362 (459)
T KOG0288|consen 322 KKVRFWDIRSADKTRSVPLGGR-----VTSLDLSMDGLELLSSSRD---------------------------------- 362 (459)
T ss_pred cceEEEeccCCceeeEeecCcc-----eeeEeeccCCeEEeeecCC----------------------------------
Confidence 3477778777766655433333 7889999999776544321
Q ss_pred cCCchhhhhhhhcccceEEEEccCC-CceecCC-C-----ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEE
Q 005240 142 LKDEYDESLFDYYTTAQLVLGSLDG-TAKDFGT-P-----AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVW 214 (706)
Q Consensus 142 ~~~~~d~~~~~~~~~~~l~~~~l~g-~~~~lt~-~-----~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~ 214 (706)
..|-++|+.+ +.+.... . .+.+...|||||.|++-.+.++ .+++|
T Consensus 363 ---------------dtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dg-------------sv~iW 414 (459)
T KOG0288|consen 363 ---------------DTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADG-------------SVYIW 414 (459)
T ss_pred ---------------CceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCC-------------cEEEE
Confidence 3455666644 4433321 1 3567889999999998766553 79999
Q ss_pred ecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCc
Q 005240 215 TTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPS 255 (706)
Q Consensus 215 ~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~ 255 (706)
++.+++........... .++..++|+|-|+.
T Consensus 415 ~v~tgKlE~~l~~s~s~----------~aI~s~~W~~sG~~ 445 (459)
T KOG0288|consen 415 SVFTGKLEKVLSLSTSN----------AAITSLSWNPSGSG 445 (459)
T ss_pred EccCceEEEEeccCCCC----------cceEEEEEcCCCch
Confidence 99988877665554332 13457899999987
|
|
| >PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00079 Score=52.95 Aligned_cols=75 Identities=17% Similarity=0.153 Sum_probs=50.8
Q ss_pred CeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCC
Q 005240 492 GVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGD 571 (706)
Q Consensus 492 g~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~ 571 (706)
|.+|....+.|++- +..+|+++||-. ........+++.|+++||.|+..+. +|+|+
T Consensus 1 G~~L~~~~w~p~~~------~k~~v~i~HG~~---------------eh~~ry~~~a~~L~~~G~~V~~~D~---rGhG~ 56 (79)
T PF12146_consen 1 GTKLFYRRWKPENP------PKAVVVIVHGFG---------------EHSGRYAHLAEFLAEQGYAVFAYDH---RGHGR 56 (79)
T ss_pred CcEEEEEEecCCCC------CCEEEEEeCCcH---------------HHHHHHHHHHHHHHhCCCEEEEECC---CcCCC
Confidence 56889999999761 358999999942 1222233567889999999999444 46666
Q ss_pred CCCc---hhhHHHHHHHHHHHH
Q 005240 572 KLPN---DRFVEQLVSSAEAAV 590 (706)
Q Consensus 572 ~~~~---~~~~~~~~~D~~~~~ 590 (706)
+... ....+..++|+...+
T Consensus 57 S~g~rg~~~~~~~~v~D~~~~~ 78 (79)
T PF12146_consen 57 SEGKRGHIDSFDDYVDDLHQFI 78 (79)
T ss_pred CCCcccccCCHHHHHHHHHHHh
Confidence 6542 234556777777654
|
Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. |
| >PRK07868 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.003 Score=75.76 Aligned_cols=85 Identities=11% Similarity=-0.017 Sum_probs=54.3
Q ss_pred HHHHHHHCCeEEEEcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhC-CC
Q 005240 547 SSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHA-PH 625 (706)
Q Consensus 547 ~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~-p~ 625 (706)
+...|+++||.|+.++. |..+...... .....+.+..+.++++.+.+.. .+++-++|+||||.+++.+++.+ ++
T Consensus 91 ~v~~L~~~g~~v~~~d~-G~~~~~~~~~-~~~l~~~i~~l~~~l~~v~~~~---~~~v~lvG~s~GG~~a~~~aa~~~~~ 165 (994)
T PRK07868 91 AVGILHRAGLDPWVIDF-GSPDKVEGGM-ERNLADHVVALSEAIDTVKDVT---GRDVHLVGYSQGGMFCYQAAAYRRSK 165 (994)
T ss_pred HHHHHHHCCCEEEEEcC-CCCChhHcCc-cCCHHHHHHHHHHHHHHHHHhh---CCceEEEEEChhHHHHHHHHHhcCCC
Confidence 45778899999998763 3322111111 1122334455666666665543 25799999999999998887644 55
Q ss_pred ceeEEEeccCC
Q 005240 626 LFCCGIARSGS 636 (706)
Q Consensus 626 ~~~a~v~~~~~ 636 (706)
+++.++.++..
T Consensus 166 ~v~~lvl~~~~ 176 (994)
T PRK07868 166 DIASIVTFGSP 176 (994)
T ss_pred ccceEEEEecc
Confidence 89988875544
|
|
| >TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0027 Score=68.48 Aligned_cols=90 Identities=13% Similarity=-0.003 Sum_probs=63.4
Q ss_pred chHHHHHHHCCeEEEEcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHH----HH
Q 005240 545 PTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAH----LL 620 (706)
Q Consensus 545 ~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~----~~ 620 (706)
..+.+.|+++||.|+..+-+. .+ .+.+.. .+++.+..+.+|++.+.+. ....+|-++|+|+||.+++. ++
T Consensus 237 ~SlVr~lv~qG~~VflIsW~n-P~--~~~r~~-~ldDYv~~i~~Ald~V~~~--tG~~~vnl~GyC~GGtl~a~~~a~~a 310 (560)
T TIGR01839 237 KSFVQYCLKNQLQVFIISWRN-PD--KAHREW-GLSTYVDALKEAVDAVRAI--TGSRDLNLLGACAGGLTCAALVGHLQ 310 (560)
T ss_pred chHHHHHHHcCCeEEEEeCCC-CC--hhhcCC-CHHHHHHHHHHHHHHHHHh--cCCCCeeEEEECcchHHHHHHHHHHH
Confidence 457788999999998844321 12 121211 1233345778888888775 34578999999999999997 67
Q ss_pred HhCCC-ceeEEEeccCCCCCC
Q 005240 621 AHAPH-LFCCGIARSGSYNKT 640 (706)
Q Consensus 621 ~~~p~-~~~a~v~~~~~~d~~ 640 (706)
+++++ +++.++.++...|..
T Consensus 311 A~~~~~~V~sltllatplDf~ 331 (560)
T TIGR01839 311 ALGQLRKVNSLTYLVSLLDST 331 (560)
T ss_pred hcCCCCceeeEEeeecccccC
Confidence 77775 799999888877743
|
This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell. |
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.023 Score=53.24 Aligned_cols=239 Identities=18% Similarity=0.209 Sum_probs=124.1
Q ss_pred ceeEeecCCCCCCCCeeeeecCCCCC-cccceeeCC--CCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCC
Q 005240 6 GIGIHRLLPDDSLGPEKEVHGYPDGA-KINFVSWSP--DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD 82 (706)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~i~~~~~~~-~~~~~~~SP--DG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~ 82 (706)
.|+|-.+.. .++...+..|.... .+..+.|-. -|..||-.+ +..++.++.-++|.-.++.....
T Consensus 34 tVkIf~v~~---n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScs----------YDgkVIiWke~~g~w~k~~e~~~ 100 (299)
T KOG1332|consen 34 TVKIFEVRN---NGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCS----------YDGKVIIWKEENGRWTKAYEHAA 100 (299)
T ss_pred cEEEEEEcC---CCCceeeeEecCCCCCeeEEeecccccCcEeeEee----------cCceEEEEecCCCchhhhhhhhh
Confidence 355555544 23345554454433 577777876 888888764 33567777777776555543222
Q ss_pred ccccccccceEEecCC--cEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEE
Q 005240 83 ICLNAVFGSFVWVNNS--TLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLV 160 (706)
Q Consensus 83 ~~~~~~~~~~~wSpDg--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~ 160 (706)
....+.+++|.|.+ -.|++.+.+ +.-.|.
T Consensus 101 --h~~SVNsV~wapheygl~LacasSD-----------------------------------------------G~vsvl 131 (299)
T KOG1332|consen 101 --HSASVNSVAWAPHEYGLLLACASSD-----------------------------------------------GKVSVL 131 (299)
T ss_pred --hcccceeecccccccceEEEEeeCC-----------------------------------------------CcEEEE
Confidence 12337788888866 346665432 113445
Q ss_pred EEccCC--CceecCCC--ceEeeeeeCCC---CcEEEEEeeccCcccccccccccceEEEEecCCC---eeEEcccCCCC
Q 005240 161 LGSLDG--TAKDFGTP--AVYTAVEPSPD---QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK---LVRELCDLPPA 230 (706)
Q Consensus 161 ~~~l~g--~~~~lt~~--~~~~~~~~SpD---G~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~l~~~~~~ 230 (706)
.++-+| ...++... -.+.++.|+|- |..+ ........+....+.-.+.+.+|..+.. ..+.|..+.
T Consensus 132 ~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~--~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~-- 207 (299)
T KOG1332|consen 132 TYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLV--DQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHK-- 207 (299)
T ss_pred EEcCCCCccchhhhhccccccceeeecCcCCCcccc--ccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcc--
Confidence 555553 33444333 45678888886 5211 1111000000000111256777777753 222233222
Q ss_pred CCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCC--CceEEeecccccccceecC
Q 005240 231 EDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGE--KPEILHKLDLRFRSVSWCD 308 (706)
Q Consensus 231 ~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~--~~~~l~~~~~~~~~~~wsp 308 (706)
+-+|+.+|.|.-......++ .-..+.. -.||..+. +.+ +.+.|...+..+..+.||.
T Consensus 208 -----------dwVRDVAwaP~~gl~~s~iA-S~SqDg~------viIwt~~~---e~e~wk~tll~~f~~~~w~vSWS~ 266 (299)
T KOG1332|consen 208 -----------DWVRDVAWAPSVGLPKSTIA-SCSQDGT------VIIWTKDE---EYEPWKKTLLEEFPDVVWRVSWSL 266 (299)
T ss_pred -----------hhhhhhhhccccCCCceeeE-EecCCCc------EEEEEecC---ccCcccccccccCCcceEEEEEec
Confidence 33678889887532122221 1111111 13455443 333 2344556677889999999
Q ss_pred CCceEEEEeeccccceEEEEEcCCC
Q 005240 309 DSLALVNETWYKTSQTRTWLVCPGS 333 (706)
Q Consensus 309 Dg~~l~~~~~~~~~~~~l~~~d~~~ 333 (706)
-|..|+... .+....||+=++++
T Consensus 267 sGn~LaVs~--GdNkvtlwke~~~G 289 (299)
T KOG1332|consen 267 SGNILAVSG--GDNKVTLWKENVDG 289 (299)
T ss_pred cccEEEEec--CCcEEEEEEeCCCC
Confidence 999888753 33455677767665
|
|
| >KOG2382 consensus Predicted alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0029 Score=62.74 Aligned_cols=44 Identities=11% Similarity=-0.003 Sum_probs=34.9
Q ss_pred HHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHH
Q 005240 650 RFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKY 694 (706)
Q Consensus 650 ~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~~~~ 694 (706)
+....+++.-..+++..++++||++. ..+...+.+.+.+|+.++
T Consensus 270 ~~~~~~~~~fp~~e~~~ld~aGHwVh-~E~P~~~~~~i~~Fl~~~ 313 (315)
T KOG2382|consen 270 EHYPRMEKIFPNVEVHELDEAGHWVH-LEKPEEFIESISEFLEEP 313 (315)
T ss_pred hHHHHHHHhccchheeecccCCceee-cCCHHHHHHHHHHHhccc
Confidence 55666666656689999999999987 456788999999988764
|
|
| >KOG4389 consensus Acetylcholinesterase/Butyrylcholinesterase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00042 Score=71.20 Aligned_cols=129 Identities=23% Similarity=0.237 Sum_probs=83.1
Q ss_pred cCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHC-CeEEEEcCCC-CcC
Q 005240 490 KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLAR-RFAVLAGPSI-PII 567 (706)
Q Consensus 490 ~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-G~~v~~~~~~-~~~ 567 (706)
+|..-+. ++.|. .++.. .-++|++|||++-+|.+...+.++ ..|++. ..+|+..||| |--
T Consensus 118 EDCLYlN--VW~P~-~~p~n---~tVlVWiyGGGF~sGt~SLdvYdG------------k~la~~envIvVs~NYRvG~F 179 (601)
T KOG4389|consen 118 EDCLYLN--VWAPA-ADPYN---LTVLVWIYGGGFYSGTPSLDVYDG------------KFLAAVENVIVVSMNYRVGAF 179 (601)
T ss_pred hhceEEE--EeccC-CCCCC---ceEEEEEEcCccccCCcceeeecc------------ceeeeeccEEEEEeeeeeccc
Confidence 4554444 66673 23332 359999999999877766666543 445654 4555666766 332
Q ss_pred CCCCCCC---chhhHHHHHHHHHHHHHHHHHcC--C-CCCCcEEEEEechHHHHHHHHHHhC--CCceeEEEeccCCCC
Q 005240 568 GEGDKLP---NDRFVEQLVSSAEAAVEEVVRRG--V-ADPSRIAVGGHSYGAFMTAHLLAHA--PHLFCCGIARSGSYN 638 (706)
Q Consensus 568 g~g~~~~---~~~~~~~~~~D~~~~~~~l~~~~--~-id~~~i~i~G~S~GG~~a~~~~~~~--p~~~~a~v~~~~~~d 638 (706)
|+ -+. .+.-++--+-|+.=|++|+.+.- + -||+||.++|-|.|+..+.+-+..- -..|+-+|+.+|..+
T Consensus 180 GF--L~l~~~~eaPGNmGl~DQqLAl~WV~~Ni~aFGGnp~~vTLFGESAGaASv~aHLlsP~S~glF~raIlQSGS~~ 256 (601)
T KOG4389|consen 180 GF--LYLPGHPEAPGNMGLLDQQLALQWVQENIAAFGGNPSRVTLFGESAGAASVVAHLLSPGSRGLFHRAILQSGSLN 256 (601)
T ss_pred eE--EecCCCCCCCCccchHHHHHHHHHHHHhHHHhCCCcceEEEeccccchhhhhheecCCCchhhHHHHHhhcCCCC
Confidence 32 211 12233444678888999999862 2 6999999999999987654433221 137999999998876
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.016 Score=63.44 Aligned_cols=200 Identities=17% Similarity=0.170 Sum_probs=105.3
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCC-cEEEEEecCCCC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNS-TLLIFTIPSSRR 110 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg-~~l~~~~~~~~~ 110 (706)
.+-++.||.++-.| -++ + +....|| .+...+...+..+.. .|..++|.|-. ++++..+-+
T Consensus 371 DILDlSWSKn~fLL-SSS-M-------DKTVRLW--h~~~~~CL~~F~Hnd-----fVTcVaFnPvDDryFiSGSLD--- 431 (712)
T KOG0283|consen 371 DILDLSWSKNNFLL-SSS-M-------DKTVRLW--HPGRKECLKVFSHND-----FVTCVAFNPVDDRYFISGSLD--- 431 (712)
T ss_pred hheecccccCCeeE-ecc-c-------cccEEee--cCCCcceeeEEecCC-----eeEEEEecccCCCcEeecccc---
Confidence 57788999876433 322 2 4445555 556777777765554 27899999944 543332210
Q ss_pred CCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCCceecCCC-ceEeeeeeCCCCcE
Q 005240 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKY 188 (706)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~~~lt~~-~~~~~~~~SpDG~~ 188 (706)
+.|-+|++ +-++.-.++- ..+++++++|||+.
T Consensus 432 ----------------------------------------------~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~ 465 (712)
T KOG0283|consen 432 ----------------------------------------------GKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKG 465 (712)
T ss_pred ----------------------------------------------cceEEeecCcCeeEeehhhhhhheeEEeccCCce
Confidence 23333455 2244444444 57889999999999
Q ss_pred EEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCC-CcceeeecCCCceEEEEEeccCCC
Q 005240 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREG-MRSISWRADKPSTLYWVEAQDRGD 267 (706)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g-~~~~~~spdg~~~l~~~~~~~~~~ 267 (706)
.++.+..+ ..++|+..+-+...=.......+. ....+ +..|.+.|-....|.++++
T Consensus 466 avIGt~~G-------------~C~fY~t~~lk~~~~~~I~~~~~K-----k~~~~rITG~Q~~p~~~~~vLVTSn----- 522 (712)
T KOG0283|consen 466 AVIGTFNG-------------YCRFYDTEGLKLVSDFHIRLHNKK-----KKQGKRITGLQFFPGDPDEVLVTSN----- 522 (712)
T ss_pred EEEEEecc-------------EEEEEEccCCeEEEeeeEeeccCc-----cccCceeeeeEecCCCCCeEEEecC-----
Confidence 98877664 455566554443221111000000 00011 2356666654433444432
Q ss_pred CccccCccceeeeecCCCCCCCCceEEeec---ccccccceecCCCceEEEEeeccccceEEEEEcCCC
Q 005240 268 ANVEVSPRDIIYTQPAEPAEGEKPEILHKL---DLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (706)
Q Consensus 268 ~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~---~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~ 333 (706)
..+|.++|. ...++...... ...-....|+.||++|++++++ . .+|+++.+.
T Consensus 523 -------DSrIRI~d~---~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seD--s--~VYiW~~~~ 577 (712)
T KOG0283|consen 523 -------DSRIRIYDG---RDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASED--S--WVYIWKNDS 577 (712)
T ss_pred -------CCceEEEec---cchhhhhhhcccccCCcceeeeEccCCCEEEEeecC--c--eEEEEeCCC
Confidence 124666665 22222222221 1222456799999999998722 2 355555443
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0053 Score=61.82 Aligned_cols=149 Identities=15% Similarity=0.130 Sum_probs=80.9
Q ss_pred CCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCcee-ecccCCCccccccccceEEecCC--cEEEEEec
Q 005240 30 GAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAK-PLFESPDICLNAVFGSFVWVNNS--TLLIFTIP 106 (706)
Q Consensus 30 ~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~-~lt~~~~~~~~~~~~~~~wSpDg--~~l~~~~~ 106 (706)
...+.+..|||||+.|+++.. + ...++++.+|... ..|.... +..+..+.|+-|+ ..|+....
T Consensus 186 ~~eV~DL~FS~dgk~lasig~--------d---~~~VW~~~~g~~~a~~t~~~k---~~~~~~cRF~~d~~~~~l~laa~ 251 (398)
T KOG0771|consen 186 HAEVKDLDFSPDGKFLASIGA--------D---SARVWSVNTGAALARKTPFSK---DEMFSSCRFSVDNAQETLRLAAS 251 (398)
T ss_pred cCccccceeCCCCcEEEEecC--------C---ceEEEEeccCchhhhcCCccc---chhhhhceecccCCCceEEEEEe
Confidence 347888999999999999753 2 5555666666432 2331111 2236688898776 23333221
Q ss_pred CCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCCCceecCCC-ceEeeeeeCCC
Q 005240 107 SSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTP-AVYTAVEPSPD 185 (706)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g~~~~lt~~-~~~~~~~~SpD 185 (706)
..... .+ . . -...+|..+--++.++.... ..+++++.|+|
T Consensus 252 ~~~~~-----------~v---------~--~-----------------~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~d 292 (398)
T KOG0771|consen 252 QFPGG-----------GV---------R--L-----------------CDISLWSGSNFLRLRKKIKRFKSISSLAVSDD 292 (398)
T ss_pred cCCCC-----------ce---------e--E-----------------EEeeeeccccccchhhhhhccCcceeEEEcCC
Confidence 11110 00 0 0 00122222211133444333 57899999999
Q ss_pred CcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCc
Q 005240 186 QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPS 255 (706)
Q Consensus 186 G~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~ 255 (706)
|+.++..+..+ .+-++++..-+..++.... .. .-+..+.|+||.+.
T Consensus 293 Gkf~AlGT~dG-------------sVai~~~~~lq~~~~vk~a--H~---------~~VT~ltF~Pdsr~ 338 (398)
T KOG0771|consen 293 GKFLALGTMDG-------------SVAIYDAKSLQRLQYVKEA--HL---------GFVTGLTFSPDSRY 338 (398)
T ss_pred CcEEEEeccCC-------------cEEEEEeceeeeeEeehhh--he---------eeeeeEEEcCCcCc
Confidence 99999888753 5667766544333322211 10 01337799999886
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.027 Score=57.04 Aligned_cols=114 Identities=13% Similarity=0.174 Sum_probs=71.2
Q ss_pred eEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCc
Q 005240 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPS 255 (706)
Q Consensus 176 ~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~ 255 (706)
.+++.+|.||| ++|..... ...+.+||+.... .++..++. ..| +..++||.+|-+
T Consensus 349 ~~ts~~fHpDg--Lifgtgt~-----------d~~vkiwdlks~~--~~a~Fpgh-t~~---------vk~i~FsENGY~ 403 (506)
T KOG0289|consen 349 EYTSAAFHPDG--LIFGTGTP-----------DGVVKIWDLKSQT--NVAKFPGH-TGP---------VKAISFSENGYW 403 (506)
T ss_pred eeEEeeEcCCc--eEEeccCC-----------CceEEEEEcCCcc--ccccCCCC-CCc---------eeEEEeccCceE
Confidence 57789999999 44443322 2489999998554 44555442 222 558899999965
Q ss_pred eEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEe-ecccccccceecCCCceEEEEeeccccceEEEEEcCCC
Q 005240 256 TLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH-KLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (706)
Q Consensus 256 ~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~-~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~ 333 (706)
|+..++ .+.+++||+. .....+.+. .....+..+.|-+-|++++... ...++|.++-.+
T Consensus 404 -Lat~ad------------d~~V~lwDLR--Kl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g----~~l~Vy~~~k~~ 463 (506)
T KOG0289|consen 404 -LATAAD------------DGSVKLWDLR--KLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAG----SDLQVYICKKKT 463 (506)
T ss_pred -EEEEec------------CCeEEEEEeh--hhcccceeeccccccceeEEEcCCCCeEEeec----ceeEEEEEeccc
Confidence 554321 1237889883 222333333 2234577888888899888652 455688887555
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.013 Score=63.06 Aligned_cols=163 Identities=10% Similarity=0.081 Sum_probs=91.2
Q ss_pred ceEEEEcc-CCCce-ecCCC---ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCC
Q 005240 157 AQLVLGSL-DGTAK-DFGTP---AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAE 231 (706)
Q Consensus 157 ~~l~~~~l-~g~~~-~lt~~---~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~ 231 (706)
..|..+|+ +|+.. +.... ..+..++++||+++|+..... ..+.+|.++.++..+......
T Consensus 40 d~Vi~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~~L~~a~rs-------------~llrv~~L~tgk~irswKa~H-- 104 (775)
T KOG0319|consen 40 DRVIIIDVATGSIALPSGSNEDEDEITALALTPDEEVLVTASRS-------------QLLRVWSLPTGKLIRSWKAIH-- 104 (775)
T ss_pred ceEEEEEccCCceecccCCccchhhhheeeecCCccEEEEeecc-------------ceEEEEEcccchHhHhHhhcc--
Confidence 45666777 55432 11111 467899999999888765543 478899999775544433211
Q ss_pred CCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCc-eEEeecccccccceecCCC
Q 005240 232 DIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP-EILHKLDLRFRSVSWCDDS 310 (706)
Q Consensus 232 ~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~-~~l~~~~~~~~~~~wspDg 310 (706)
..| +....+.|.| . |.-. .+.+ +.+.+||. .++.. ..+...++.+..+.|.|+-
T Consensus 105 e~P---------vi~ma~~~~g-~-LlAt---ggaD--------~~v~VWdi---~~~~~th~fkG~gGvVssl~F~~~~ 159 (775)
T KOG0319|consen 105 EAP---------VITMAFDPTG-T-LLAT---GGAD--------GRVKVWDI---KNGYCTHSFKGHGGVVSSLLFHPHW 159 (775)
T ss_pred CCC---------eEEEEEcCCC-c-eEEe---cccc--------ceEEEEEe---eCCEEEEEecCCCceEEEEEeCCcc
Confidence 122 2256788888 4 3312 1212 24778888 44443 3455668889999999995
Q ss_pred ce-EEEEeeccccceEEEEEcCCCCCCCc-eeeecCcccccccCCCCCceEeccCCCEEEEe
Q 005240 311 LA-LVNETWYKTSQTRTWLVCPGSKDVAP-RVLFDRVFENVYSDPGSPMMTRTSTGTNVIAK 370 (706)
Q Consensus 311 ~~-l~~~~~~~~~~~~l~~~d~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 370 (706)
.+ +++.. . ....++.+|+... .+ ..+...... ....+.+++|+..++..
T Consensus 160 ~~~lL~sg-~--~D~~v~vwnl~~~--~tcl~~~~~H~S------~vtsL~~~~d~~~~ls~ 210 (775)
T KOG0319|consen 160 NRWLLASG-A--TDGTVRVWNLNDK--RTCLHTMILHKS------AVTSLAFSEDSLELLSV 210 (775)
T ss_pred chhheeec-C--CCceEEEEEcccC--chHHHHHHhhhh------heeeeeeccCCceEEEe
Confidence 44 43332 2 2345666776652 22 111111111 12236678887766554
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.098 Score=49.53 Aligned_cols=206 Identities=12% Similarity=0.116 Sum_probs=117.8
Q ss_pred cccceeeCC-CCCeEEEEeeccccccccCCceeEEEEEcCCCceeecc-cCCCccccccccceEEecCCcEEEEEecCCC
Q 005240 32 KINFVSWSP-DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLF-ESPDICLNAVFGSFVWVNNSTLLIFTIPSSR 109 (706)
Q Consensus 32 ~~~~~~~SP-DG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt-~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~ 109 (706)
.-..++||| =-.+||.+..... .-.|...|+++++..++-.+.. ... .+.+.-+++||+.-+-++++..
T Consensus 10 ~GysvqfSPf~~nrLavAt~q~y---Gl~G~G~L~ile~~~~~gi~e~~s~d---~~D~LfdV~Wse~~e~~~~~a~--- 80 (311)
T KOG0277|consen 10 HGYSVQFSPFVENRLAVATAQHY---GLAGNGRLFILEVTDPKGIQECQSYD---TEDGLFDVAWSENHENQVIAAS--- 80 (311)
T ss_pred ccceeEecccccchhheeehhhc---ccccCceEEEEecCCCCCeEEEEeee---cccceeEeeecCCCcceEEEEe---
Confidence 355788999 3344544432111 1146789999998643322221 111 1223567899988776555432
Q ss_pred CCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCC--C-ceecCCC-ceEeeeeeCCC
Q 005240 110 RDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG--T-AKDFGTP-AVYTAVEPSPD 185 (706)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g--~-~~~lt~~-~~~~~~~~SpD 185 (706)
+.+.|-++|+.- . ...+.+. ..+.++.|++-
T Consensus 81 ---------------------------------------------GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~ 115 (311)
T KOG0277|consen 81 ---------------------------------------------GDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTV 115 (311)
T ss_pred ---------------------------------------------cCceEEEeccCCCCcchhHHHhhhhheEEeccccc
Confidence 114555556532 2 2233344 67889999998
Q ss_pred CcEEEEEeeccCcccccccccccceEEEEecC-CCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEecc
Q 005240 186 QKYVLITSMHRPYSYKVPCARFSQKVQVWTTD-GKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQD 264 (706)
Q Consensus 186 G~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~ 264 (706)
-++++.++.= ...|.+|+.+ ...+++..... .-++...|||.-.. |+ .+ .
T Consensus 116 ~r~~~ltsSW------------D~TiKLW~~~r~~Sv~Tf~gh~-------------~~Iy~a~~sp~~~n-lf-as--~ 166 (311)
T KOG0277|consen 116 RRRIFLTSSW------------DGTIKLWDPNRPNSVQTFNGHN-------------SCIYQAAFSPHIPN-LF-AS--A 166 (311)
T ss_pred cceeEEeecc------------CCceEeecCCCCcceEeecCCc-------------cEEEEEecCCCCCC-eE-EE--c
Confidence 8888777632 2478889887 33334322211 12446689987766 33 21 1
Q ss_pred CCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCC
Q 005240 265 RGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (706)
Q Consensus 265 ~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~ 333 (706)
.++. .+.+||++ ..|+...+..+...+-.-.|+.-...++++.. ...-|+.+|+..
T Consensus 167 Sgd~--------~l~lwdvr--~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~---vd~~vr~wDir~ 222 (311)
T KOG0277|consen 167 SGDG--------TLRLWDVR--SPGKFMSIEAHNSEILCCDWSKYNHNVLATGG---VDNLVRGWDIRN 222 (311)
T ss_pred cCCc--------eEEEEEec--CCCceeEEEeccceeEeecccccCCcEEEecC---CCceEEEEehhh
Confidence 2222 46677774 34565557766777777889988777777642 223466667665
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.094 Score=55.55 Aligned_cols=207 Identities=13% Similarity=0.048 Sum_probs=123.5
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~ 111 (706)
.......+|+|++++ ..+ .....+.++|.++.+...-..... ....++++||++.+|..-...
T Consensus 75 ~p~~i~v~~~~~~vy-v~~--------~~~~~v~vid~~~~~~~~~~~vG~-----~P~~~~~~~~~~~vYV~n~~~--- 137 (381)
T COG3391 75 YPAGVAVNPAGNKVY-VTT--------GDSNTVSVIDTATNTVLGSIPVGL-----GPVGLAVDPDGKYVYVANAGN--- 137 (381)
T ss_pred cccceeeCCCCCeEE-Eec--------CCCCeEEEEcCcccceeeEeeecc-----CCceEEECCCCCEEEEEeccc---
Confidence 345678899999884 433 224678888866554333221111 256889999999888763210
Q ss_pred CCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCCc-eecCCCceEeeeeeCCCCcEE
Q 005240 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTA-KDFGTPAVYTAVEPSPDQKYV 189 (706)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~-~~lt~~~~~~~~~~SpDG~~i 189 (706)
....++++|. ++.. ..+..+.....++++|+|+++
T Consensus 138 -------------------------------------------~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p~g~~v 174 (381)
T COG3391 138 -------------------------------------------GNNTVSVIDAATNKVTATIPVGNTPTGVAVDPDGNKV 174 (381)
T ss_pred -------------------------------------------CCceEEEEeCCCCeEEEEEecCCCcceEEECCCCCeE
Confidence 1156777777 3332 223322334788999999999
Q ss_pred EEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCc
Q 005240 190 LITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDAN 269 (706)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~ 269 (706)
+..... ...|.+++..+..+.+ ....... ....+++.+.++|||+. +|... ....
T Consensus 175 yv~~~~------------~~~v~vi~~~~~~v~~-~~~~~~~-------~~~~~P~~i~v~~~g~~-~yV~~-~~~~--- 229 (381)
T COG3391 175 YVTNSD------------DNTVSVIDTSGNSVVR-GSVGSLV-------GVGTGPAGIAVDPDGNR-VYVAN-DGSG--- 229 (381)
T ss_pred EEEecC------------CCeEEEEeCCCcceec-ccccccc-------ccCCCCceEEECCCCCE-EEEEe-ccCC---
Confidence 877633 3578889977766554 2211110 00133567899999997 55442 2211
Q ss_pred cccCccceeeeecCCCCCCCCceEEe-eccc-ccccceecCCCceEEEEeeccccceEEEEEcCCCC
Q 005240 270 VEVSPRDIIYTQPAEPAEGEKPEILH-KLDL-RFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK 334 (706)
Q Consensus 270 ~~~~~~~~l~~~d~~~~~~~~~~~l~-~~~~-~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~ 334 (706)
...+..+|. .++...... .... .......+|+|+.++..... ...++.+|..+.
T Consensus 230 -----~~~v~~id~---~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~---~~~V~vid~~~~ 285 (381)
T COG3391 230 -----SNNVLKIDT---ATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQ---GGTVSVIDGATD 285 (381)
T ss_pred -----CceEEEEeC---CCceEEEeccccccCCCCceeECCCCCEEEEEecC---CCeEEEEeCCCC
Confidence 124677776 444444431 1111 45567899999988876432 456888887774
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.053 Score=55.33 Aligned_cols=231 Identities=15% Similarity=0.213 Sum_probs=127.5
Q ss_pred cccceeEeecCCCCCCCCee-------eeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCc--
Q 005240 3 FFTGIGIHRLLPDDSLGPEK-------EVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-- 73 (706)
Q Consensus 3 ~~~~~~~~~~~~~~~~g~~~-------~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~-- 73 (706)
.-.+|+|.|.+......++. .|++... ......|++.-+--..+.. .+....+|-++..+.+
T Consensus 145 ~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~--eg~glsWn~~~~g~Lls~~-------~d~~i~lwdi~~~~~~~~ 215 (422)
T KOG0264|consen 145 SSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEK--EGYGLSWNRQQEGTLLSGS-------DDHTICLWDINAESKEDK 215 (422)
T ss_pred CCCCEEEEEeccCCCcccccccCCCceEEEeecc--cccccccccccceeEeecc-------CCCcEEEEeccccccCCc
Confidence 34567888877633222222 3443333 2455889986665544332 1445556655543332
Q ss_pred ---eeecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhh
Q 005240 74 ---AKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESL 150 (706)
Q Consensus 74 ---~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 150 (706)
++.++.+.. ..+.+.+|+|-.+.|+....
T Consensus 216 ~~~p~~~~~~h~----~~VeDV~~h~~h~~lF~sv~-------------------------------------------- 247 (422)
T KOG0264|consen 216 VVDPKTIFSGHE----DVVEDVAWHPLHEDLFGSVG-------------------------------------------- 247 (422)
T ss_pred cccceEEeecCC----cceehhhccccchhhheeec--------------------------------------------
Confidence 122222222 23778899987765543321
Q ss_pred hhhcccceEEEEcc-CC--CceecCCC--ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcc
Q 005240 151 FDYYTTAQLVLGSL-DG--TAKDFGTP--AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELC 225 (706)
Q Consensus 151 ~~~~~~~~l~~~~l-~g--~~~~lt~~--~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 225 (706)
....|.++|+ .+ +++..... +.+.+++|+|=+..|+.+.... ..|.+||+-.-.. .|-
T Consensus 248 ----dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D------------~tV~LwDlRnL~~-~lh 310 (422)
T KOG0264|consen 248 ----DDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSAD------------KTVALWDLRNLNK-PLH 310 (422)
T ss_pred ----CCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCC------------CcEEEeechhccc-Cce
Confidence 1156777787 33 33333333 6788999999888887665432 4899999863222 121
Q ss_pred cCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCC---------CCCCCCceEEee
Q 005240 226 DLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAE---------PAEGEKPEILHK 296 (706)
Q Consensus 226 ~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~---------~~~~~~~~~l~~ 296 (706)
...+.+ ..+..+.|||+... +.-. .+.+. ++.+||+. ..+.+.++.|+-
T Consensus 311 ~~e~H~----------dev~~V~WSPh~et-vLAS---Sg~D~--------rl~vWDls~ig~eq~~eda~dgppEllF~ 368 (422)
T KOG0264|consen 311 TFEGHE----------DEVFQVEWSPHNET-VLAS---SGTDR--------RLNVWDLSRIGEEQSPEDAEDGPPELLFI 368 (422)
T ss_pred eccCCC----------cceEEEEeCCCCCc-eeEe---cccCC--------cEEEEeccccccccChhhhccCCcceeEE
Confidence 122111 22457899999987 3322 33333 24455552 012233444543
Q ss_pred c---ccccccceecCCCceEEEEeeccccceEEEEEc
Q 005240 297 L---DLRFRSVSWCDDSLALVNETWYKTSQTRTWLVC 330 (706)
Q Consensus 297 ~---~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d 330 (706)
+ ...+.++.|.|+--+++....++ +..+||.+.
T Consensus 369 HgGH~~kV~DfsWnp~ePW~I~SvaeD-N~LqIW~~s 404 (422)
T KOG0264|consen 369 HGGHTAKVSDFSWNPNEPWTIASVAED-NILQIWQMA 404 (422)
T ss_pred ecCcccccccccCCCCCCeEEEEecCC-ceEEEeecc
Confidence 3 55688999999988877665333 566777764
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.075 Score=53.34 Aligned_cols=149 Identities=14% Similarity=0.081 Sum_probs=84.6
Q ss_pred ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCee-EEcccCCCCCCCCcccCccCCCCcceeeecCC
Q 005240 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIPVCYNSVREGMRSISWRADK 253 (706)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg 253 (706)
..+.-+.|.|-..-+++++.. .+.+.+||+++++. -.|. ++ +-+.+++|+-||
T Consensus 132 rrVg~V~wHPtA~NVLlsag~------------Dn~v~iWnv~tgeali~l~-hp-------------d~i~S~sfn~dG 185 (472)
T KOG0303|consen 132 RRVGLVQWHPTAPNVLLSAGS------------DNTVSIWNVGTGEALITLD-HP-------------DMVYSMSFNRDG 185 (472)
T ss_pred eeEEEEeecccchhhHhhccC------------CceEEEEeccCCceeeecC-CC-------------CeEEEEEeccCC
Confidence 356678899998888777654 25899999997653 3332 22 225578999999
Q ss_pred CceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEe-ec-ccccccceecCCCceEEEEeeccccceEEEEEcC
Q 005240 254 PSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH-KL-DLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCP 331 (706)
Q Consensus 254 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~-~~-~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~ 331 (706)
.. |+-.. .+ ..|.++|. ..+++..-- .+ ......+.|..+|+ |+.+.-.+....++-++|.
T Consensus 186 s~-l~Ttc-kD-----------KkvRv~dp---r~~~~v~e~~~heG~k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp 248 (472)
T KOG0303|consen 186 SL-LCTTC-KD-----------KKVRVIDP---RRGTVVSEGVAHEGAKPARAIFLASGK-IFTTGFSRMSERQIALWDP 248 (472)
T ss_pred ce-eeeec-cc-----------ceeEEEcC---CCCcEeeecccccCCCcceeEEeccCc-eeeeccccccccceeccCc
Confidence 86 54331 11 13667776 344433221 22 33455677999998 4433222223344555565
Q ss_pred CCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEeee
Q 005240 332 GSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIK 372 (706)
Q Consensus 332 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 372 (706)
+.- .+|..+.+-+ .+.|...+-+.+|.+.||..-.
T Consensus 249 ~nl-~eP~~~~elD-----tSnGvl~PFyD~dt~ivYl~GK 283 (472)
T KOG0303|consen 249 NNL-EEPIALQELD-----TSNGVLLPFYDPDTSIVYLCGK 283 (472)
T ss_pred ccc-cCcceeEEec-----cCCceEEeeecCCCCEEEEEec
Confidence 543 2343333222 1234444556788877776653
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.028 Score=61.22 Aligned_cols=145 Identities=14% Similarity=0.056 Sum_probs=74.9
Q ss_pred eeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCce-eecccCCCccccccccceEEecCCcEEEEEecC--CCCCC
Q 005240 36 VSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-KPLFESPDICLNAVFGSFVWVNNSTLLIFTIPS--SRRDP 112 (706)
Q Consensus 36 ~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~-~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~--~~~~~ 112 (706)
+-++|||+.|.-.+ ....-+-++|.++.+. .++.- +.+ .....++|||+++++++.. .....
T Consensus 198 ~PlpnDGk~l~~~~---------ey~~~vSvID~etmeV~~qV~V-dgn-----pd~v~~spdGk~afvTsyNsE~G~tl 262 (635)
T PRK02888 198 IPLPNDGKDLDDPK---------KYRSLFTAVDAETMEVAWQVMV-DGN-----LDNVDTDYDGKYAFSTCYNSEEGVTL 262 (635)
T ss_pred cccCCCCCEeeccc---------ceeEEEEEEECccceEEEEEEe-CCC-----cccceECCCCCEEEEeccCcccCcce
Confidence 44788888763221 4456677889887554 33321 222 5678999999998887521 11111
Q ss_pred CCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-C----C-C-ceecCCCceEeeeeeCCC
Q 005240 113 PKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-D----G-T-AKDFGTPAVYTAVEPSPD 185 (706)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~----g-~-~~~lt~~~~~~~~~~SpD 185 (706)
......+....+.. .+........+++ +.+.....+-++|. + + + ...+..+.....+.+|||
T Consensus 263 ~em~a~e~d~~vvf----------ni~~iea~vkdGK-~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPD 331 (635)
T PRK02888 263 AEMMAAERDWVVVF----------NIARIEEAVKAGK-FKTIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPD 331 (635)
T ss_pred eeeccccCceEEEE----------chHHHHHhhhCCC-EEEECCCEEEEEECCccccCCcceEEEEECCCCccceEECCC
Confidence 00000000000000 0000000011111 11112356777777 4 2 2 233444467789999999
Q ss_pred CcEEEEEeeccCcccccccccccceEEEEecCC
Q 005240 186 QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG 218 (706)
Q Consensus 186 G~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 218 (706)
|++|+.+.... ..+-++|+..
T Consensus 332 GkylyVanklS------------~tVSVIDv~k 352 (635)
T PRK02888 332 GKYFIANGKLS------------PTVTVIDVRK 352 (635)
T ss_pred CCEEEEeCCCC------------CcEEEEEChh
Confidence 99998776543 4677888764
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.049 Score=50.87 Aligned_cols=126 Identities=16% Similarity=0.214 Sum_probs=80.3
Q ss_pred ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCC
Q 005240 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (706)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~ 254 (706)
+.+..+.+.-||++.+--... ..+.+|++-.+..-+-..+.+.+ +.+.+-+.|..
T Consensus 18 gaV~avryN~dGnY~ltcGsd-------------rtvrLWNp~rg~liktYsghG~E------------VlD~~~s~Dns 72 (307)
T KOG0316|consen 18 GAVRAVRYNVDGNYCLTCGSD-------------RTVRLWNPLRGALIKTYSGHGHE------------VLDAALSSDNS 72 (307)
T ss_pred cceEEEEEccCCCEEEEcCCC-------------ceEEeecccccceeeeecCCCce------------eeecccccccc
Confidence 567788999999998644333 47899998855444434444332 34556666766
Q ss_pred ceEEEEEeccCCCCccccCccceeeeecCCCCCCCCc-eEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCC
Q 005240 255 STLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP-EILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (706)
Q Consensus 255 ~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~-~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~ 333 (706)
+ ++ .-+++. .+++||+ .+|+. +++-.+...+..+.|..+...++..+.+ ...++| |-.+
T Consensus 73 k-f~----s~GgDk--------~v~vwDV---~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD--~s~r~w--DCRS 132 (307)
T KOG0316|consen 73 K-FA----SCGGDK--------AVQVWDV---NTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFD--SSVRLW--DCRS 132 (307)
T ss_pred c-cc----cCCCCc--------eEEEEEc---ccCeeeeecccccceeeEEEecCcceEEEecccc--ceeEEE--Eccc
Confidence 5 32 123333 3789999 66765 4556778899999999888877655422 334444 4444
Q ss_pred CCCCceeeecCc
Q 005240 334 KDVAPRVLFDRV 345 (706)
Q Consensus 334 ~~~~~~~l~~~~ 345 (706)
...+|.++++..
T Consensus 133 ~s~ePiQildea 144 (307)
T KOG0316|consen 133 RSFEPIQILDEA 144 (307)
T ss_pred CCCCccchhhhh
Confidence 446778776543
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.031 Score=52.74 Aligned_cols=222 Identities=14% Similarity=0.165 Sum_probs=121.6
Q ss_pred ceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccc
Q 005240 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (706)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 85 (706)
.|+|.+++. . +..+...++........++||+.-..++++.. ++|.-+|| | .+....+|-...++
T Consensus 39 ~L~ile~~~--~-~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~-------GDGSLrl~--d-~~~~s~Pi~~~kEH-- 103 (311)
T KOG0277|consen 39 RLFILEVTD--P-KGIQECQSYDTEDGLFDVAWSENHENQVIAAS-------GDGSLRLF--D-LTMPSKPIHKFKEH-- 103 (311)
T ss_pred eEEEEecCC--C-CCeEEEEeeecccceeEeeecCCCcceEEEEe-------cCceEEEe--c-cCCCCcchhHHHhh--
Confidence 577888853 1 33333444444445788999999999999874 25555555 4 23333344322222
Q ss_pred cccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccC
Q 005240 86 NAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD 165 (706)
Q Consensus 86 ~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~ 165 (706)
...+-++.|.+--+..+.++. - .+.|.+++.+
T Consensus 104 ~~EV~Svdwn~~~r~~~ltsS---W---------------------------------------------D~TiKLW~~~ 135 (311)
T KOG0277|consen 104 KREVYSVDWNTVRRRIFLTSS---W---------------------------------------------DGTIKLWDPN 135 (311)
T ss_pred hhheEEeccccccceeEEeec---c---------------------------------------------CCceEeecCC
Confidence 123668889876655555431 0 0334444442
Q ss_pred --CCceecCCC-ceEeeeeeCCCCc-EEEEEeeccCcccccccccccceEEEEecC-CCeeEEcccCCCCCCCCcccCcc
Q 005240 166 --GTAKDFGTP-AVYTAVEPSPDQK-YVLITSMHRPYSYKVPCARFSQKVQVWTTD-GKLVRELCDLPPAEDIPVCYNSV 240 (706)
Q Consensus 166 --g~~~~lt~~-~~~~~~~~SpDG~-~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~l~~~~~~~~~p~~~~~~ 240 (706)
..++..... ..+....|||--. .++..+.+ ..+.+||+. .++...+..+..
T Consensus 136 r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd-------------~~l~lwdvr~~gk~~~i~ah~~----------- 191 (311)
T KOG0277|consen 136 RPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGD-------------GTLRLWDVRSPGKFMSIEAHNS----------- 191 (311)
T ss_pred CCcceEeecCCccEEEEEecCCCCCCeEEEccCC-------------ceEEEEEecCCCceeEEEeccc-----------
Confidence 233333333 5677889999554 44444433 367788877 222222333321
Q ss_pred CCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeecc
Q 005240 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYK 320 (706)
Q Consensus 241 ~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~ 320 (706)
..-...|+.-... ++++... ...|+.||+.-+. -.+-.|..+...+..+.|||-...|+...+++
T Consensus 192 --Eil~cdw~ky~~~-vl~Tg~v-----------d~~vr~wDir~~r-~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYD 256 (311)
T KOG0277|consen 192 --EILCCDWSKYNHN-VLATGGV-----------DNLVRGWDIRNLR-TPLFELNGHGLAVRKVKFSPHHASLLASASYD 256 (311)
T ss_pred --eeEeecccccCCc-EEEecCC-----------CceEEEEehhhcc-ccceeecCCceEEEEEecCcchhhHhhhcccc
Confidence 1225578877666 4433211 1258888883211 11223445677889999999977776555454
Q ss_pred ccceEEEEEc
Q 005240 321 TSQTRTWLVC 330 (706)
Q Consensus 321 ~~~~~l~~~d 330 (706)
-..+||..-
T Consensus 257 -mT~riw~~~ 265 (311)
T KOG0277|consen 257 -MTVRIWDPE 265 (311)
T ss_pred -ceEEecccc
Confidence 344555543
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.12 Score=55.67 Aligned_cols=49 Identities=12% Similarity=0.087 Sum_probs=35.0
Q ss_pred ceeeeecCCCCCCC-CceEEeecccccccceecCCCceEEEEeeccccceEEEEE
Q 005240 276 DIIYTQPAEPAEGE-KPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLV 329 (706)
Q Consensus 276 ~~l~~~d~~~~~~~-~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~ 329 (706)
..|++|+. .+- +...|..++..+..+.|||||++|+..+.+ +.-.||..
T Consensus 552 AvI~lw~t---~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRD--Rt~sl~~~ 601 (764)
T KOG1063|consen 552 AVIRLWNT---ANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRD--RTVSLYEV 601 (764)
T ss_pred eEEEEEec---cchhhhheecccceEEEEEEECCCCcEEEEeecC--ceEEeeee
Confidence 35788876 332 334577788889999999999999987633 44557766
|
|
| >COG3208 GrsT Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0065 Score=57.68 Aligned_cols=40 Identities=23% Similarity=0.357 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHc-C--CCCCCcEEEEEechHHHHHHHHHHhC
Q 005240 583 VSSAEAAVEEVVRR-G--VADPSRIAVGGHSYGAFMTAHLLAHA 623 (706)
Q Consensus 583 ~~D~~~~~~~l~~~-~--~id~~~i~i~G~S~GG~~a~~~~~~~ 623 (706)
..|+...++.+..+ . +.| ...+++||||||.+|..++.+.
T Consensus 53 ~~di~~Lad~la~el~~~~~d-~P~alfGHSmGa~lAfEvArrl 95 (244)
T COG3208 53 LTDIESLADELANELLPPLLD-APFALFGHSMGAMLAFEVARRL 95 (244)
T ss_pred cccHHHHHHHHHHHhccccCC-CCeeecccchhHHHHHHHHHHH
Confidence 45555666655553 1 233 5799999999999999988654
|
|
| >COG3571 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.026 Score=49.39 Aligned_cols=140 Identities=13% Similarity=0.108 Sum_probs=72.5
Q ss_pred HHHHHHHCCeEEEE--cCCCCcCCCCCCCCch--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHh
Q 005240 547 SSLIFLARRFAVLA--GPSIPIIGEGDKLPND--RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAH 622 (706)
Q Consensus 547 ~~~~l~~~G~~v~~--~~~~~~~g~g~~~~~~--~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~ 622 (706)
.+..|+.+|+.|.. -.|+..+..|..-... ...+.. -+.++..|.+. .+..++++.|+||||-++.+++..
T Consensus 35 ~a~~la~~G~~vaRfefpYma~Rrtg~rkPp~~~~t~~~~---~~~~~aql~~~--l~~gpLi~GGkSmGGR~aSmvade 109 (213)
T COG3571 35 VAAALARRGWLVARFEFPYMAARRTGRRKPPPGSGTLNPE---YIVAIAQLRAG--LAEGPLIIGGKSMGGRVASMVADE 109 (213)
T ss_pred HHHHHHhCceeEEEeecchhhhccccCCCCcCccccCCHH---HHHHHHHHHhc--ccCCceeeccccccchHHHHHHHh
Confidence 45678889999864 2333333333221111 111111 11222234333 456789999999999999998854
Q ss_pred CCCceeEEEecc-CCCCCC-------------CCCccc-h--------HHHHHHHHHhCCCcEEEEEeCCCCccCCCcc-
Q 005240 623 APHLFCCGIARS-GSYNKT-------------LTPFGF-Q--------AERFFDALKGHGALSRLVLLPFEHHVYAARE- 678 (706)
Q Consensus 623 ~p~~~~a~v~~~-~~~d~~-------------~~~~~~-~--------~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~- 678 (706)
---.+.+++++. |++..- -+|..+ | .+++..... .-+.+++.+.++.|..-..+
T Consensus 110 ~~A~i~~L~clgYPfhppGKPe~~Rt~HL~gl~tPtli~qGtrD~fGtr~~Va~y~l--s~~iev~wl~~adHDLkp~k~ 187 (213)
T COG3571 110 LQAPIDGLVCLGYPFHPPGKPEQLRTEHLTGLKTPTLITQGTRDEFGTRDEVAGYAL--SDPIEVVWLEDADHDLKPRKL 187 (213)
T ss_pred hcCCcceEEEecCccCCCCCcccchhhhccCCCCCeEEeecccccccCHHHHHhhhc--CCceEEEEeccCccccccccc
Confidence 322355555443 433200 012111 1 124433322 34789999999999764221
Q ss_pred --------cHHHHHHHHHHHHHH
Q 005240 679 --------NVMHVIWETDRWLQK 693 (706)
Q Consensus 679 --------~~~~~~~~~~~f~~~ 693 (706)
+.....+.+..|..+
T Consensus 188 vsgls~~~hL~~~A~~va~~~~~ 210 (213)
T COG3571 188 VSGLSTADHLKTLAEQVAGWARR 210 (213)
T ss_pred cccccHHHHHHHHHHHHHHHHhh
Confidence 123445556666655
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.011 Score=66.99 Aligned_cols=152 Identities=12% Similarity=0.168 Sum_probs=78.9
Q ss_pred ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCC
Q 005240 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (706)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~ 254 (706)
+.+..+.|.|.+.-++-+... ..+|++||++.-+ ...+.+ ...+ ...+..++|...-.
T Consensus 117 G~V~gLDfN~~q~nlLASGa~------------~geI~iWDlnn~~-tP~~~~---~~~~------~~eI~~lsWNrkvq 174 (1049)
T KOG0307|consen 117 GPVLGLDFNPFQGNLLASGAD------------DGEILIWDLNKPE-TPFTPG---SQAP------PSEIKCLSWNRKVS 174 (1049)
T ss_pred CceeeeeccccCCceeeccCC------------CCcEEEeccCCcC-CCCCCC---CCCC------cccceEeccchhhh
Confidence 678889999988744333322 2489999998421 111111 0000 02234566654433
Q ss_pred ceEEEEEeccCCCCccccCccceeeeecCCCCCCCC-ceEEeec--ccccccceecCCC-ceEEEEeeccccceEEEEEc
Q 005240 255 STLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEK-PEILHKL--DLRFRSVSWCDDS-LALVNETWYKTSQTRTWLVC 330 (706)
Q Consensus 255 ~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-~~~l~~~--~~~~~~~~wspDg-~~l~~~~~~~~~~~~l~~~d 330 (706)
+ |. .+ ...++...+||+ ...+ +-.+... ......+.|.||+ .+|+..+ ++++...|-+.|
T Consensus 175 h-IL-AS----------~s~sg~~~iWDl---r~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As-~dd~~PviqlWD 238 (1049)
T KOG0307|consen 175 H-IL-AS----------GSPSGRAVIWDL---RKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVAS-GDDSAPVIQLWD 238 (1049)
T ss_pred H-Hh-hc----------cCCCCCceeccc---cCCCcccccccCCCccceeeeeeCCCCceeeeeec-CCCCCceeEeec
Confidence 3 11 11 112234667787 2222 2223322 2457789999996 4555554 334455566666
Q ss_pred CCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEee
Q 005240 331 PGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 331 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 371 (706)
+.-.. .+..++.. +..|...+.|++.+..++++.
T Consensus 239 lR~as-sP~k~~~~------H~~GilslsWc~~D~~lllSs 272 (1049)
T KOG0307|consen 239 LRFAS-SPLKILEG------HQRGILSLSWCPQDPRLLLSS 272 (1049)
T ss_pred ccccC-Cchhhhcc------cccceeeeccCCCCchhhhcc
Confidence 54432 23333221 122455678998887666654
|
|
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0014 Score=43.67 Aligned_cols=37 Identities=11% Similarity=0.050 Sum_probs=27.3
Q ss_pred eEEeecccccccceecCCCceEEEEeecc-ccceEEEE
Q 005240 292 EILHKLDLRFRSVSWCDDSLALVNETWYK-TSQTRTWL 328 (706)
Q Consensus 292 ~~l~~~~~~~~~~~wspDg~~l~~~~~~~-~~~~~l~~ 328 (706)
++++........|.|||||++|+|.+... .+..+||+
T Consensus 2 ~~~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy~ 39 (39)
T PF07676_consen 2 KQLTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIYV 39 (39)
T ss_dssp EEES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEEE
T ss_pred cCcccCCccccCEEEecCCCEEEEEecCCCCCCcCEEC
Confidence 56777778889999999999999998654 25666774
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.023 Score=59.12 Aligned_cols=37 Identities=22% Similarity=0.158 Sum_probs=23.7
Q ss_pred ceEEEEccCC-CceecCCC--ceEeeeeeCCCCcEEEEEe
Q 005240 157 AQLVLGSLDG-TAKDFGTP--AVYTAVEPSPDQKYVLITS 193 (706)
Q Consensus 157 ~~l~~~~l~g-~~~~lt~~--~~~~~~~~SpDG~~i~~~~ 193 (706)
+-|-+++.+. +..-+... +....++||||||+|+...
T Consensus 312 GfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGG 351 (636)
T KOG2394|consen 312 GFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGG 351 (636)
T ss_pred ceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecC
Confidence 4555556644 33333222 5678999999999998544
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.1 Score=52.08 Aligned_cols=137 Identities=17% Similarity=0.197 Sum_probs=83.1
Q ss_pred ceEEEEccCC-Cc-eec-CC-C--ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCe-eEEcccCCC
Q 005240 157 AQLVLGSLDG-TA-KDF-GT-P--AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL-VRELCDLPP 229 (706)
Q Consensus 157 ~~l~~~~l~g-~~-~~l-t~-~--~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~ 229 (706)
.+||++|+.. ++ ..+ +. . .....++.++.+.+|+|-.... ..+|.+||+..-+ +..+..+.+
T Consensus 106 e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t-----------~GdV~l~d~~nl~~v~~I~aH~~ 174 (391)
T KOG2110|consen 106 ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTT-----------SGDVVLFDTINLQPVNTINAHKG 174 (391)
T ss_pred ccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCC-----------CceEEEEEcccceeeeEEEecCC
Confidence 5699999954 22 222 11 1 3455666667777999976554 3589999987533 223332322
Q ss_pred CCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeec--ccccccceec
Q 005240 230 AEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL--DLRFRSVSWC 307 (706)
Q Consensus 230 ~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~--~~~~~~~~ws 307 (706)
. ...++|++||.. |+-.+ +.|. .|.+..+. +|.+..++-.. ...+.+++|+
T Consensus 175 ~-------------lAalafs~~G~l-lATAS--eKGT---------VIRVf~v~--~G~kl~eFRRG~~~~~IySL~Fs 227 (391)
T KOG2110|consen 175 P-------------LAALAFSPDGTL-LATAS--EKGT---------VIRVFSVP--EGQKLYEFRRGTYPVSIYSLSFS 227 (391)
T ss_pred c-------------eeEEEECCCCCE-EEEec--cCce---------EEEEEEcC--CccEeeeeeCCceeeEEEEEEEC
Confidence 1 347899999986 65432 2221 24455551 33334444322 5578899999
Q ss_pred CCCceEEEEeeccccceEEEEEcCCC
Q 005240 308 DDSLALVNETWYKTSQTRTWLVCPGS 333 (706)
Q Consensus 308 pDg~~l~~~~~~~~~~~~l~~~d~~~ 333 (706)
||++.|...++ ++..||+.++...
T Consensus 228 ~ds~~L~~sS~--TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 228 PDSQFLAASSN--TETVHIFKLEKVS 251 (391)
T ss_pred CCCCeEEEecC--CCeEEEEEecccc
Confidence 99998887653 3567888887544
|
|
| >PTZ00472 serine carboxypeptidase (CBP1); Provisional | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.011 Score=63.93 Aligned_cols=144 Identities=11% Similarity=0.051 Sum_probs=80.9
Q ss_pred CeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCC---chHHHHHHHCCeEEEEcCCCCcCC
Q 005240 492 GVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMT---PTSSLIFLARRFAVLAGPSIPIIG 568 (706)
Q Consensus 492 g~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~G~~v~~~~~~~~~g 568 (706)
+..+..|++...+ ++.. .|+||+++|||=++.-.....-.+|....... ......|.+.+.+|+.-...| .|
T Consensus 60 ~~~lFyw~~~s~~-~~~~---~Pl~lwlnGGPG~ss~~G~f~E~GP~~i~~~~~~~~~n~~sW~~~~~~l~iDqP~G-~G 134 (462)
T PTZ00472 60 DKHYFYWAFGPRN-GNPE---APVLLWMTGGPGCSSMFALLAENGPCLMNETTGDIYNNTYSWNNEAYVIYVDQPAG-VG 134 (462)
T ss_pred CceEEEEEEEcCC-CCCC---CCEEEEECCCCcHHHHHhhhccCCCeEEeCCCCceeECCcccccccCeEEEeCCCC-cC
Confidence 4578888887664 3332 69999999998554221111112222221110 011223455555555411211 24
Q ss_pred CCCCCCc--hhhHHHHHHHHHHHHHHHHHc-CCCCCCcEEEEEechHHHHHHHHHHhC----------CCceeEEEeccC
Q 005240 569 EGDKLPN--DRFVEQLVSSAEAAVEEVVRR-GVADPSRIAVGGHSYGAFMTAHLLAHA----------PHLFCCGIARSG 635 (706)
Q Consensus 569 ~g~~~~~--~~~~~~~~~D~~~~~~~l~~~-~~id~~~i~i~G~S~GG~~a~~~~~~~----------p~~~~a~v~~~~ 635 (706)
++..... ........+|+..+++...++ +.....++.|+|+||||..+..++.+- .=-+++++...|
T Consensus 135 ~S~~~~~~~~~~~~~~a~d~~~~l~~f~~~~p~~~~~~~~i~GeSygG~y~p~~a~~i~~~n~~~~~~~inLkGi~IGNg 214 (462)
T PTZ00472 135 FSYADKADYDHNESEVSEDMYNFLQAFFGSHEDLRANDLFVVGESYGGHYAPATAYRINMGNKKGDGLYINLAGLAVGNG 214 (462)
T ss_pred cccCCCCCCCCChHHHHHHHHHHHHHHHHhCccccCCCEEEEeecchhhhHHHHHHHHHhhccccCCceeeeEEEEEecc
Confidence 3322111 122356678888888766554 334458999999999999887666441 013788888888
Q ss_pred CCCCC
Q 005240 636 SYNKT 640 (706)
Q Consensus 636 ~~d~~ 640 (706)
..+..
T Consensus 215 ~~dp~ 219 (462)
T PTZ00472 215 LTDPY 219 (462)
T ss_pred ccChh
Confidence 87643
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.022 Score=56.40 Aligned_cols=235 Identities=14% Similarity=0.126 Sum_probs=124.7
Q ss_pred ceEEEEcc-CCCceecCCC--ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCC
Q 005240 157 AQLVLGSL-DGTAKDFGTP--AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDI 233 (706)
Q Consensus 157 ~~l~~~~l-~g~~~~lt~~--~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~ 233 (706)
..|+++|. +|+..+-..+ ..+..+.++.-|++|+-.+.+- .+.+|+.++- .+.+....+.+
T Consensus 130 ~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl-------------~~~LWd~~~~-~~c~ks~~gh~-- 193 (406)
T KOG0295|consen 130 ATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDL-------------SAKLWDFDTF-FRCIKSLIGHE-- 193 (406)
T ss_pred ceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCcc-------------chhheeHHHH-HHHHHHhcCcc--
Confidence 57888898 7765443333 4578899999999988655432 3778887742 11111111211
Q ss_pred CcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceE
Q 005240 234 PVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLAL 313 (706)
Q Consensus 234 p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l 313 (706)
.++..+.+-|-|.. |.=. ..+ ..|+.|+.+ .+-...+++..+.-+..+..+.||..+
T Consensus 194 --------h~vS~V~f~P~gd~-ilS~----srD--------~tik~We~~--tg~cv~t~~~h~ewvr~v~v~~DGti~ 250 (406)
T KOG0295|consen 194 --------HGVSSVFFLPLGDH-ILSC----SRD--------NTIKAWECD--TGYCVKTFPGHSEWVRMVRVNQDGTII 250 (406)
T ss_pred --------cceeeEEEEecCCe-eeec----ccc--------cceeEEecc--cceeEEeccCchHhEEEEEecCCeeEE
Confidence 23445677777765 3311 111 147788883 333566777777777788888999877
Q ss_pred EEEeeccccceEEEEEcCCCCCCCceeeecCcccccccCC-----CCCceEeccCCCEEEEeeeccCCcceEEEEecCCC
Q 005240 314 VNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDP-----GSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGF 388 (706)
Q Consensus 314 ~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~-----~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~ 388 (706)
+..+ .+...++|......-+.+ ....+..++.+...| ..++-.-+.+|..+.++..
T Consensus 251 As~s--~dqtl~vW~~~t~~~k~~-lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~S---------------- 311 (406)
T KOG0295|consen 251 ASCS--NDQTLRVWVVATKQCKAE-LREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGS---------------- 311 (406)
T ss_pred EecC--CCceEEEEEeccchhhhh-hhccccceEEEEecccccCcchhhccCCCCCccEEEeec----------------
Confidence 7654 334556676654321100 111222332221111 1111111122222222211
Q ss_pred CCCCCCCceeeeecCCCceeeeecccchhhhhhhhhhccCCCceecccCCCEEEEEEecCCCCcEEEEEECCCCceeEee
Q 005240 389 TPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQIT 468 (706)
Q Consensus 389 ~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~p~~v~~~~~~~~~~~~lt 468 (706)
+...+..+|+.+|.. |+.. .++..-....+|+|-|++|+-...+.+ +..||+++++.+..-
T Consensus 312 ----rDktIk~wdv~tg~c--L~tL---------~ghdnwVr~~af~p~Gkyi~ScaDDkt----lrvwdl~~~~cmk~~ 372 (406)
T KOG0295|consen 312 ----RDKTIKIWDVSTGMC--LFTL---------VGHDNWVRGVAFSPGGKYILSCADDKT----LRVWDLKNLQCMKTL 372 (406)
T ss_pred ----ccceEEEEeccCCeE--EEEE---------ecccceeeeeEEcCCCeEEEEEecCCc----EEEEEeccceeeecc
Confidence 112355567777742 1111 111122235789999988887666555 889999887665543
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.26 Score=49.46 Aligned_cols=239 Identities=15% Similarity=0.093 Sum_probs=131.3
Q ss_pred CcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEe-cCC-cEEEEEecCC
Q 005240 31 AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWV-NNS-TLLIFTIPSS 108 (706)
Q Consensus 31 ~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wS-pDg-~~l~~~~~~~ 108 (706)
..++.+..+ +++|.-.+ +...+.+++.+|....+++.+.+. +...+|- +|. +.++..+..
T Consensus 106 DWVSsv~~~--~~~Iltgs----------YDg~~riWd~~Gk~~~~~~Ght~~-----ik~v~~v~~n~~~~~fvsas~- 167 (423)
T KOG0313|consen 106 DWVSSVKGA--SKWILTGS----------YDGTSRIWDLKGKSIKTIVGHTGP-----IKSVAWVIKNSSSCLFVSASM- 167 (423)
T ss_pred hhhhhhccc--CceEEEee----------cCCeeEEEecCCceEEEEecCCcc-----eeeeEEEecCCccceEEEecC-
Confidence 366667766 78886643 335566678888888888755543 7778884 333 333333211
Q ss_pred CCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccC-C--CceecCCC--ceEeeeeeC
Q 005240 109 RRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD-G--TAKDFGTP--AVYTAVEPS 183 (706)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~-g--~~~~lt~~--~~~~~~~~S 183 (706)
+ ..-.||.++.. . +....-.+ ..+.+++..
T Consensus 168 -D--------------------------------------------qtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~ 202 (423)
T KOG0313|consen 168 -D--------------------------------------------QTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVD 202 (423)
T ss_pred -C--------------------------------------------ceEEEEEecCchhhhhHHhHhcccccceeEEEec
Confidence 0 12467777762 2 22223224 677889999
Q ss_pred CCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEccc------------CCCCCCCCcccC-ccCCCCcceeee
Q 005240 184 PDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCD------------LPPAEDIPVCYN-SVREGMRSISWR 250 (706)
Q Consensus 184 pDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~------------~~~~~~~p~~~~-~~~~g~~~~~~s 250 (706)
+||.++.-.+-+ ..|-+|+........+.. .......|.... .....+..+.|+
T Consensus 203 ~sgtr~~SgS~D-------------~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~ 269 (423)
T KOG0313|consen 203 SSGTRFCSGSWD-------------TMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWS 269 (423)
T ss_pred CCCCeEEeeccc-------------ceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEc
Confidence 999988654433 367777732211111111 111111222111 111124467788
Q ss_pred cCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCc-eEEeecccccccceecCCCceEEEEeeccccceEEEEE
Q 005240 251 ADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP-EILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLV 329 (706)
Q Consensus 251 pdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~-~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~ 329 (706)
+.+ .+|.. .+...|.+||+ .++.. ..++ ....+..+..+|..+.|+..+ ...+|.++
T Consensus 270 d~~---v~yS~-----------SwDHTIk~WDl---etg~~~~~~~-~~ksl~~i~~~~~~~Ll~~gs----sdr~irl~ 327 (423)
T KOG0313|consen 270 DAT---VIYSV-----------SWDHTIKVWDL---ETGGLKSTLT-TNKSLNCISYSPLSKLLASGS----SDRHIRLW 327 (423)
T ss_pred CCC---ceEee-----------cccceEEEEEe---ecccceeeee-cCcceeEeecccccceeeecC----CCCceeec
Confidence 733 22332 23346889999 55443 3343 456677888899888787765 23468888
Q ss_pred cCCCCCCCceee-ecCcccccccCCCCCceEeccCCCEEEEeeec
Q 005240 330 CPGSKDVAPRVL-FDRVFENVYSDPGSPMMTRTSTGTNVIAKIKK 373 (706)
Q Consensus 330 d~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~ 373 (706)
|+.++++..... +-..-..+ -.+.|+|...+++.+...
T Consensus 328 DPR~~~gs~v~~s~~gH~nwV------ssvkwsp~~~~~~~S~S~ 366 (423)
T KOG0313|consen 328 DPRTGDGSVVSQSLIGHKNWV------SSVKWSPTNEFQLVSGSY 366 (423)
T ss_pred CCCCCCCceeEEeeecchhhh------hheecCCCCceEEEEEec
Confidence 988876543332 11111111 126688988888777654
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.032 Score=59.46 Aligned_cols=57 Identities=19% Similarity=0.355 Sum_probs=42.7
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCce-eecccCCCccccccccceEEecCCcEEEEE
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-KPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~-~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~ 104 (706)
.+.+++|-|||..|..+. ...|+++|+..|.. ..+-.+.. .+..++||.||++++..
T Consensus 14 ci~d~afkPDGsqL~lAA-----------g~rlliyD~ndG~llqtLKgHKD-----tVycVAys~dGkrFASG 71 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-----------GSRLLVYDTSDGTLLQPLKGHKD-----TVYCVAYAKDGKRFASG 71 (1081)
T ss_pred chheeEECCCCceEEEec-----------CCEEEEEeCCCcccccccccccc-----eEEEEEEccCCceeccC
Confidence 578899999999998854 37899999876554 44432322 37789999999997754
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.79 E-value=1.1 Score=48.61 Aligned_cols=100 Identities=14% Similarity=0.307 Sum_probs=59.8
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCce-eecccCCCccccccccceEEecCCcEEEEEecCCCC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-KPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~-~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~ 110 (706)
.+...++|.+.+.||..+. ++.-+|| ++..+=. .++..++. +..+..++|++.|+ |+.. .
T Consensus 27 ~I~slA~s~kS~~lAvsRt--------~g~IEiw--N~~~~w~~~~vi~g~~---drsIE~L~W~e~~R-LFS~-g---- 87 (691)
T KOG2048|consen 27 EIVSLAYSHKSNQLAVSRT--------DGNIEIW--NLSNNWFLEPVIHGPE---DRSIESLAWAEGGR-LFSS-G---- 87 (691)
T ss_pred ceEEEEEeccCCceeeecc--------CCcEEEE--ccCCCceeeEEEecCC---CCceeeEEEccCCe-EEee-c----
Confidence 3778899999999998765 5556665 4444321 22222222 23477899996666 4432 1
Q ss_pred CCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCCce-ecCCC-ceEeeeeeCCCCc
Q 005240 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAK-DFGTP-AVYTAVEPSPDQK 187 (706)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~~-~lt~~-~~~~~~~~SpDG~ 187 (706)
..+.|--+|+ +++.. .+... +.+..++.+|-++
T Consensus 88 --------------------------------------------~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~ 123 (691)
T KOG2048|consen 88 --------------------------------------------LSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENT 123 (691)
T ss_pred --------------------------------------------CCceEEEEecccCceeEEecCCCcceeEEEeCCccc
Confidence 1156667777 66333 33222 5677788888887
Q ss_pred EEEEEee
Q 005240 188 YVLITSM 194 (706)
Q Consensus 188 ~i~~~~~ 194 (706)
.++....
T Consensus 124 ~l~Igcd 130 (691)
T KOG2048|consen 124 ILAIGCD 130 (691)
T ss_pred eEEeecC
Confidence 7766543
|
|
| >PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.012 Score=58.74 Aligned_cols=107 Identities=15% Similarity=0.161 Sum_probs=63.3
Q ss_pred ceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHH---CCeEEEEcCCCCcCCCCCCCCc--------hhhHHH
Q 005240 513 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA---RRFAVLAGPSIPIIGEGDKLPN--------DRFVEQ 581 (706)
Q Consensus 513 ~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~G~~v~~~~~~~~~g~g~~~~~--------~~~~~~ 581 (706)
.++||++-|.| |-..| +..+...|.+ ..|.|+.... .|+...... .-..++
T Consensus 2 ~~li~~IPGNP------------Glv~f---Y~~Fl~~L~~~l~~~~~i~~ish---~Gh~~~~~~~~~~~~~~~~sL~~ 63 (266)
T PF10230_consen 2 RPLIVFIPGNP------------GLVEF---YEEFLSALYEKLNPQFEILGISH---AGHSTSPSNSKFSPNGRLFSLQD 63 (266)
T ss_pred cEEEEEECCCC------------ChHHH---HHHHHHHHHHhCCCCCeeEEecC---CCCcCCcccccccCCCCccCHHH
Confidence 47889998876 11122 2344555553 4788887333 233222111 111223
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCC---CceeEEEeccCCC
Q 005240 582 LVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAP---HLFCCGIARSGSY 637 (706)
Q Consensus 582 ~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p---~~~~a~v~~~~~~ 637 (706)
.++-..+.++.+.........++.++|||.|+||++.++-+.+ ..++.++..-|..
T Consensus 64 QI~hk~~~i~~~~~~~~~~~~~liLiGHSIGayi~levl~r~~~~~~~V~~~~lLfPTi 122 (266)
T PF10230_consen 64 QIEHKIDFIKELIPQKNKPNVKLILIGHSIGAYIALEVLKRLPDLKFRVKKVILLFPTI 122 (266)
T ss_pred HHHHHHHHHHHHhhhhcCCCCcEEEEeCcHHHHHHHHHHHhccccCCceeEEEEeCCcc
Confidence 3333334444444432113469999999999999999999998 5777777777764
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0076 Score=65.79 Aligned_cols=92 Identities=13% Similarity=0.202 Sum_probs=64.2
Q ss_pred CceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccch
Q 005240 60 CKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTD 139 (706)
Q Consensus 60 ~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (706)
+...|.++|..+-+..+...+.++ .+.++.+||||++|+..+.+
T Consensus 554 ddf~I~vvD~~t~kvvR~f~gh~n----ritd~~FS~DgrWlisasmD-------------------------------- 597 (910)
T KOG1539|consen 554 DDFSIRVVDVVTRKVVREFWGHGN----RITDMTFSPDGRWLISASMD-------------------------------- 597 (910)
T ss_pred CceeEEEEEchhhhhhHHhhcccc----ceeeeEeCCCCcEEEEeecC--------------------------------
Confidence 457899999887766554432222 27789999999999987532
Q ss_pred hccCCchhhhhhhhcccceEEEEcc-CCC-ceecCCCceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEec
Q 005240 140 NLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTT 216 (706)
Q Consensus 140 ~~~~~~~d~~~~~~~~~~~l~~~~l-~g~-~~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~ 216 (706)
..|.++|+ +|. .--+.......++.+||+|.+|+.+.... ..||+|.-
T Consensus 598 -----------------~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~------------~gIylWsN 647 (910)
T KOG1539|consen 598 -----------------STIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQ------------NGIYLWSN 647 (910)
T ss_pred -----------------CcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEecC------------ceEEEEEc
Confidence 56777788 663 22232224566899999999999877653 47888863
|
|
| >PLN02733 phosphatidylcholine-sterol O-acyltransferase | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0058 Score=65.04 Aligned_cols=88 Identities=10% Similarity=0.177 Sum_probs=62.4
Q ss_pred hHHHHHHHCCeEEEEcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCC
Q 005240 546 TSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH 625 (706)
Q Consensus 546 ~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~ 625 (706)
...+.|.+.||.+- ..-.|+|..|+........+.++...++.+.+.. ...+|.++||||||.+++..+..+|+
T Consensus 112 ~li~~L~~~GY~~~----~dL~g~gYDwR~~~~~~~~~~~Lk~lIe~~~~~~--g~~kV~LVGHSMGGlva~~fl~~~p~ 185 (440)
T PLN02733 112 DMIEQLIKWGYKEG----KTLFGFGYDFRQSNRLPETMDGLKKKLETVYKAS--GGKKVNIISHSMGGLLVKCFMSLHSD 185 (440)
T ss_pred HHHHHHHHcCCccC----CCcccCCCCccccccHHHHHHHHHHHHHHHHHHc--CCCCEEEEEECHhHHHHHHHHHHCCH
Confidence 45677889999762 1233555555543334556777888888776652 23689999999999999999988876
Q ss_pred c----eeEEEeccCCCCC
Q 005240 626 L----FCCGIARSGSYNK 639 (706)
Q Consensus 626 ~----~~a~v~~~~~~d~ 639 (706)
. ++..|+.++.+.-
T Consensus 186 ~~~k~I~~~I~la~P~~G 203 (440)
T PLN02733 186 VFEKYVNSWIAIAAPFQG 203 (440)
T ss_pred hHHhHhccEEEECCCCCC
Confidence 4 6778888876653
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.047 Score=57.64 Aligned_cols=265 Identities=13% Similarity=0.144 Sum_probs=135.3
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcE--EEEEecCCC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTL--LIFTIPSSR 109 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~--l~~~~~~~~ 109 (706)
.+..+...|-|.+||-.+. +|...||. +.||.+.+.....+. +.+++|.|.++. |+... ...
T Consensus 402 ~Vr~iSvdp~G~wlasGsd--------DGtvriWE--i~TgRcvr~~~~d~~-----I~~vaw~P~~~~~vLAvA~-~~~ 465 (733)
T KOG0650|consen 402 LVRSISVDPSGEWLASGSD--------DGTVRIWE--IATGRCVRTVQFDSE-----IRSVAWNPLSDLCVLAVAV-GEC 465 (733)
T ss_pred eEEEEEecCCcceeeecCC--------CCcEEEEE--eecceEEEEEeecce-----eEEEEecCCCCceeEEEEe-cCc
Confidence 3667788899999988654 55555654 568876655444443 889999999874 33332 111
Q ss_pred CCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccC----C---CceecCCCceEeeeee
Q 005240 110 RDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD----G---TAKDFGTPAVYTAVEP 182 (706)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~----g---~~~~lt~~~~~~~~~~ 182 (706)
-+.. +. ..|..+....... ++. ... .......++..+.-. + -...|.....+..+.|
T Consensus 466 -~~iv-np-~~G~~~e~~~t~e-----ll~---~~~-----~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtW 529 (733)
T KOG0650|consen 466 -VLIV-NP-IFGDRLEVGPTKE-----LLA---SAP-----NESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTW 529 (733)
T ss_pred -eEEe-Cc-cccchhhhcchhh-----hhh---cCC-----CccCCcccceeechhhhhhhccceEEEEecCCccceeee
Confidence 1000 00 0000000000000 000 000 000011233333221 1 1223333456788999
Q ss_pred CCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEe
Q 005240 183 SPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEA 262 (706)
Q Consensus 183 SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~ 262 (706)
..+|.||+.+..... ...+.+..+.....+ . ...-..+. +-...|.|-... |++...
T Consensus 530 HrkGDYlatV~~~~~----------~~~VliHQLSK~~sQ-~-PF~kskG~----------vq~v~FHPs~p~-lfVaTq 586 (733)
T KOG0650|consen 530 HRKGDYLATVMPDSG----------NKSVLIHQLSKRKSQ-S-PFRKSKGL----------VQRVKFHPSKPY-LFVATQ 586 (733)
T ss_pred ecCCceEEEeccCCC----------cceEEEEeccccccc-C-chhhcCCc----------eeEEEecCCCce-EEEEec
Confidence 999999998776543 357788877633221 1 11001011 225578887776 443321
Q ss_pred ccCCCCccccCccceeeeecCCCCCCCC-ceEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceee
Q 005240 263 QDRGDANVEVSPRDIIYTQPAEPAEGEK-PEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVL 341 (706)
Q Consensus 263 ~~~~~~~~~~~~~~~l~~~d~~~~~~~~-~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l 341 (706)
. .|.++|+ ..++ ++.|......++.++.+|.|--|+..+. ..++..+|++=+...-+.|
T Consensus 587 ~-------------~vRiYdL---~kqelvKkL~tg~kwiS~msihp~GDnli~gs~----d~k~~WfDldlsskPyk~l 646 (733)
T KOG0650|consen 587 R-------------SVRIYDL---SKQELVKKLLTGSKWISSMSIHPNGDNLILGSY----DKKMCWFDLDLSSKPYKTL 646 (733)
T ss_pred c-------------ceEEEeh---hHHHHHHHHhcCCeeeeeeeecCCCCeEEEecC----CCeeEEEEcccCcchhHHh
Confidence 1 2666776 3222 2345566778889999999888887652 2345566655432222222
Q ss_pred --ecCcccccccCCCCCceE-eccCCCEEEEee
Q 005240 342 --FDRVFENVYSDPGSPMMT-RTSTGTNVIAKI 371 (706)
Q Consensus 342 --~~~~~~~~~~~~~~~~~~-~s~dg~~l~~~~ 371 (706)
....+.++...+..+-++ -|+||..++|-.
T Consensus 647 r~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg 679 (733)
T KOG0650|consen 647 RLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHG 679 (733)
T ss_pred hhhhhhhhhhhhccccceeeeecCCCcEEEEee
Confidence 334444554444444333 478888777754
|
|
| >PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.027 Score=54.59 Aligned_cols=56 Identities=14% Similarity=0.135 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHcC---CCCCCcEEEEEechHHHHHHHHHHhCC---CceeEEEeccCCCC
Q 005240 583 VSSAEAAVEEVVRRG---VADPSRIAVGGHSYGAFMTAHLLAHAP---HLFCCGIARSGSYN 638 (706)
Q Consensus 583 ~~D~~~~~~~l~~~~---~id~~~i~i~G~S~GG~~a~~~~~~~p---~~~~a~v~~~~~~d 638 (706)
.+-+..+++++.+.. ...+.+|.+.||||||.++-.++...+ +.++.++..+....
T Consensus 63 ~~~~~~~i~~i~~~~~~~~~~~~~vilVgHSmGGlvar~~l~~~~~~~~~v~~iitl~tPh~ 124 (225)
T PF07819_consen 63 AEFLAEAIKYILELYKSNRPPPRSVILVGHSMGGLVARSALSLPNYDPDSVKTIITLGTPHR 124 (225)
T ss_pred HHHHHHHHHHHHHhhhhccCCCCceEEEEEchhhHHHHHHHhccccccccEEEEEEEcCCCC
Confidence 333445556555432 356789999999999999888876543 46788887765433
|
This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane |
| >PRK06765 homoserine O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0033 Score=66.41 Aligned_cols=51 Identities=22% Similarity=0.262 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEE-EEEechHHHHHHHHHHhCCCceeEEEeccC
Q 005240 583 VSSAEAAVEEVVRRGVADPSRIA-VGGHSYGAFMTAHLLAHAPHLFCCGIARSG 635 (706)
Q Consensus 583 ~~D~~~~~~~l~~~~~id~~~i~-i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~ 635 (706)
+.|..+.+..+++.--+ +++. ++|+||||+.++..+.++|++++.+|..++
T Consensus 143 ~~d~~~~~~~ll~~lgi--~~~~~vvG~SmGG~ial~~a~~~P~~v~~lv~ia~ 194 (389)
T PRK06765 143 ILDFVRVQKELIKSLGI--ARLHAVMGPSMGGMQAQEWAVHYPHMVERMIGVIG 194 (389)
T ss_pred HHHHHHHHHHHHHHcCC--CCceEEEEECHHHHHHHHHHHHChHhhheEEEEec
Confidence 34444444444443223 5675 999999999999999999999999998865
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.25 Score=50.56 Aligned_cols=161 Identities=10% Similarity=0.103 Sum_probs=91.1
Q ss_pred ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCC--CeeEEcccCCCCCCCCcccCccCCCCcceeeecC
Q 005240 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG--KLVRELCDLPPAEDIPVCYNSVREGMRSISWRAD 252 (706)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spd 252 (706)
..+..++|.|-.+.|+-+... ...+.+||+-. .+.+....... ..+..++|+|-
T Consensus 228 ~~VeDV~~h~~h~~lF~sv~d------------d~~L~iwD~R~~~~~~~~~~~ah~------------~~vn~~~fnp~ 283 (422)
T KOG0264|consen 228 DVVEDVAWHPLHEDLFGSVGD------------DGKLMIWDTRSNTSKPSHSVKAHS------------AEVNCVAFNPF 283 (422)
T ss_pred cceehhhccccchhhheeecC------------CCeEEEEEcCCCCCCCcccccccC------------CceeEEEeCCC
Confidence 567889999988877544333 25899999874 22222211111 11336789998
Q ss_pred CCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccccceEEEEEcCC
Q 005240 253 KPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPG 332 (706)
Q Consensus 253 g~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~ 332 (706)
+...|+ . .+.+. +|.++|+..+. ..+..+..+...+..+.|||+...|+..+. .++...+|-+.--
T Consensus 284 ~~~ilA-T---~S~D~--------tV~LwDlRnL~-~~lh~~e~H~dev~~V~WSPh~etvLASSg-~D~rl~vWDls~i 349 (422)
T KOG0264|consen 284 NEFILA-T---GSADK--------TVALWDLRNLN-KPLHTFEGHEDEVFQVEWSPHNETVLASSG-TDRRLNVWDLSRI 349 (422)
T ss_pred CCceEE-e---ccCCC--------cEEEeechhcc-cCceeccCCCcceEEEEeCCCCCceeEecc-cCCcEEEEecccc
Confidence 876333 2 22222 47888884222 233445567888999999999888776653 3345556655543
Q ss_pred CCCCCceeeecCccccccc----CCCCCceEeccCCCEEEEeeec
Q 005240 333 SKDVAPRVLFDRVFENVYS----DPGSPMMTRTSTGTNVIAKIKK 373 (706)
Q Consensus 333 ~~~~~~~~l~~~~~~~~~~----~~~~~~~~~s~dg~~l~~~~~~ 373 (706)
+.+..+..-.+...+-++. ......++|.|..-+++.++.+
T Consensus 350 g~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~Svae 394 (422)
T KOG0264|consen 350 GEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAE 394 (422)
T ss_pred ccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecC
Confidence 3211101111222221111 1234568899999999888754
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.52 Score=47.78 Aligned_cols=37 Identities=16% Similarity=0.348 Sum_probs=28.7
Q ss_pred ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEc
Q 005240 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVREL 224 (706)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 224 (706)
.++..++|+||+..+++.+.. +.+++||+..+..-..
T Consensus 124 ~diydL~Ws~d~~~l~s~s~d-------------ns~~l~Dv~~G~l~~~ 160 (434)
T KOG1009|consen 124 DDIYDLAWSPDSNFLVSGSVD-------------NSVRLWDVHAGQLLAI 160 (434)
T ss_pred cchhhhhccCCCceeeeeecc-------------ceEEEEEeccceeEee
Confidence 567789999999999887764 4789999986654433
|
|
| >COG4947 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.002 Score=56.64 Aligned_cols=49 Identities=35% Similarity=0.549 Sum_probs=42.0
Q ss_pred HHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCCCC
Q 005240 590 VEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKT 640 (706)
Q Consensus 590 ~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d~~ 640 (706)
-.|++++.. |.+..+.|.||||++|+....++|++|..+|+.+|++|..
T Consensus 91 erYv~eEal--pgs~~~sgcsmGayhA~nfvfrhP~lftkvialSGvYdar 139 (227)
T COG4947 91 ERYVIEEAL--PGSTIVSGCSMGAYHAANFVFRHPHLFTKVIALSGVYDAR 139 (227)
T ss_pred HHHHHHhhc--CCCccccccchhhhhhhhhheeChhHhhhheeecceeeHH
Confidence 456766643 4678899999999999999999999999999999998754
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.048 Score=51.31 Aligned_cols=130 Identities=14% Similarity=0.117 Sum_probs=78.8
Q ss_pred cceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCcc
Q 005240 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~ 84 (706)
-+|.++|..+ |+..+-- .....+.++-+|+||+.|..+ ....|-.+|+++=...+-..-+-
T Consensus 165 ~tVRLWD~rT----gt~v~sL--~~~s~VtSlEvs~dG~ilTia-----------~gssV~Fwdaksf~~lKs~k~P~-- 225 (334)
T KOG0278|consen 165 KTVRLWDHRT----GTEVQSL--EFNSPVTSLEVSQDGRILTIA-----------YGSSVKFWDAKSFGLLKSYKMPC-- 225 (334)
T ss_pred CceEEEEecc----CcEEEEE--ecCCCCcceeeccCCCEEEEe-----------cCceeEEeccccccceeeccCcc--
Confidence 3567777766 6665543 344458888999999888653 23455556766533222212222
Q ss_pred ccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc
Q 005240 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (706)
Q Consensus 85 ~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l 164 (706)
.+.+...+|+...+++.. ...-+|.+|.
T Consensus 226 ---nV~SASL~P~k~~fVaGg-------------------------------------------------ed~~~~kfDy 253 (334)
T KOG0278|consen 226 ---NVESASLHPKKEFFVAGG-------------------------------------------------EDFKVYKFDY 253 (334)
T ss_pred ---ccccccccCCCceEEecC-------------------------------------------------cceEEEEEec
Confidence 366778888887655431 1156788888
Q ss_pred -CC-CceecCCC--ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCC
Q 005240 165 -DG-TAKDFGTP--AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG 218 (706)
Q Consensus 165 -~g-~~~~lt~~--~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 218 (706)
+| +......+ +.+.+++|||||..-+..+.+ ..|.+|-..-
T Consensus 254 ~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSED-------------GTirlWQt~~ 298 (334)
T KOG0278|consen 254 NTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSED-------------GTIRLWQTTP 298 (334)
T ss_pred cCCceeeecccCCCCceEEEEECCCCceeeccCCC-------------ceEEEEEecC
Confidence 66 44333233 789999999999665433332 2677776553
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.3 Score=49.80 Aligned_cols=188 Identities=11% Similarity=0.098 Sum_probs=104.2
Q ss_pred CCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCce-eecccCCCccccccccceEEecCCcEEEEEec
Q 005240 28 PDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-KPLFESPDICLNAVFGSFVWVNNSTLLIFTIP 106 (706)
Q Consensus 28 ~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~-~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~ 106 (706)
+....+......|.|++|..+++ ++ ..-..|..+|.. .++... ... -.+.+.++.|||-.+...+
T Consensus 301 ~h~~~V~~ls~h~tgeYllsAs~--------d~--~w~Fsd~~~g~~lt~vs~~-~s~--v~~ts~~fHpDgLifgtgt- 366 (506)
T KOG0289|consen 301 PHEEPVTGLSLHPTGEYLLSASN--------DG--TWAFSDISSGSQLTVVSDE-TSD--VEYTSAAFHPDGLIFGTGT- 366 (506)
T ss_pred cccccceeeeeccCCcEEEEecC--------Cc--eEEEEEccCCcEEEEEeec-ccc--ceeEEeeEcCCceEEeccC-
Confidence 34446788899999999988764 22 222234445542 223221 111 1256789999995433221
Q ss_pred CCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCC--CceecCCC-ceEeeeeeC
Q 005240 107 SSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG--TAKDFGTP-AVYTAVEPS 183 (706)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g--~~~~lt~~-~~~~~~~~S 183 (706)
..+.|-.+|+.. ...+.... +.+..++||
T Consensus 367 ------------------------------------------------~d~~vkiwdlks~~~~a~Fpght~~vk~i~Fs 398 (506)
T KOG0289|consen 367 ------------------------------------------------PDGVVKIWDLKSQTNVAKFPGHTGPVKAISFS 398 (506)
T ss_pred ------------------------------------------------CCceEEEEEcCCccccccCCCCCCceeEEEec
Confidence 126777888843 44444444 788999999
Q ss_pred CCCcEEEEEeeccCcccccccccccceEEEEecCCC-eeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEe
Q 005240 184 PDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK-LVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEA 262 (706)
Q Consensus 184 pDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~ 262 (706)
-+|=+|+...+++ .+.+||+..- ..+.+.-... .+...+.|-+.|.. |...
T Consensus 399 ENGY~Lat~add~-------------~V~lwDLRKl~n~kt~~l~~~------------~~v~s~~fD~SGt~-L~~~-- 450 (506)
T KOG0289|consen 399 ENGYWLATAADDG-------------SVKLWDLRKLKNFKTIQLDEK------------KEVNSLSFDQSGTY-LGIA-- 450 (506)
T ss_pred cCceEEEEEecCC-------------eEEEEEehhhcccceeecccc------------ccceeEEEcCCCCe-EEee--
Confidence 9999998776553 4999998632 2222222111 12335667777765 3311
Q ss_pred ccCCCCccccCccceeeeecCCCCCCCCceE---EeecccccccceecCCCceEEEEee
Q 005240 263 QDRGDANVEVSPRDIIYTQPAEPAEGEKPEI---LHKLDLRFRSVSWCDDSLALVNETW 318 (706)
Q Consensus 263 ~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~---l~~~~~~~~~~~wspDg~~l~~~~~ 318 (706)
+.+. .||+++- .+.+-+. +....+....+.|..+.++++..+.
T Consensus 451 --g~~l--------~Vy~~~k---~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~sm 496 (506)
T KOG0289|consen 451 --GSDL--------QVYICKK---KTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSM 496 (506)
T ss_pred --ccee--------EEEEEec---ccccceeeehhhhcccccceeeecccceEEeeccc
Confidence 1111 3556553 2333333 2333445555666666676665543
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.077 Score=51.07 Aligned_cols=113 Identities=18% Similarity=0.303 Sum_probs=70.6
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCcee-e-cccCCCccccccccceEEec--CCcEEEEEecC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAK-P-LFESPDICLNAVFGSFVWVN--NSTLLIFTIPS 107 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~-~-lt~~~~~~~~~~~~~~~wSp--Dg~~l~~~~~~ 107 (706)
.+..+.|-|++.+||-.. ..+|-+++++.+..+ + +...........+.+-+||| ||..++.+..
T Consensus 125 ~i~cvew~Pns~klasm~-----------dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d- 192 (370)
T KOG1007|consen 125 KINCVEWEPNSDKLASMD-----------DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSD- 192 (370)
T ss_pred ceeeEEEcCCCCeeEEec-----------cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCC-
Confidence 567789999999999864 256666676655432 1 11111110011244668998 8888776632
Q ss_pred CCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCC--CceecCCC--ceEeeeeeC
Q 005240 108 SRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG--TAKDFGTP--AVYTAVEPS 183 (706)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g--~~~~lt~~--~~~~~~~~S 183 (706)
+.|+-+|+.. +...+... ..+..+.+.
T Consensus 193 -------------------------------------------------~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfN 223 (370)
T KOG1007|consen 193 -------------------------------------------------STLQFWDLRTMKKNNSIEDAHGQRVRDLDFN 223 (370)
T ss_pred -------------------------------------------------CcEEEEEccchhhhcchhhhhcceeeeccCC
Confidence 4566666622 33334333 457789999
Q ss_pred CCCcEEEEEeeccCcccccccccccceEEEEecC
Q 005240 184 PDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD 217 (706)
Q Consensus 184 pDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 217 (706)
|+-++++.+..+. ..|.+||..
T Consensus 224 pnkq~~lvt~gDd------------gyvriWD~R 245 (370)
T KOG1007|consen 224 PNKQHILVTCGDD------------GYVRIWDTR 245 (370)
T ss_pred CCceEEEEEcCCC------------ccEEEEecc
Confidence 9999998777653 468888876
|
|
| >COG2021 MET2 Homoserine acetyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0069 Score=61.12 Aligned_cols=53 Identities=15% Similarity=0.097 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcE-EEEEechHHHHHHHHHHhCCCceeEEEeccCC
Q 005240 582 LVSSAEAAVEEVVRRGVADPSRI-AVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 636 (706)
Q Consensus 582 ~~~D~~~~~~~l~~~~~id~~~i-~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~ 636 (706)
-+.|.+.+-+.|++.=-| +++ +|+|.||||+.|+.-+.++|++++.++.++..
T Consensus 128 ti~D~V~aq~~ll~~LGI--~~l~avvGgSmGGMqaleWa~~yPd~V~~~i~ia~~ 181 (368)
T COG2021 128 TIRDMVRAQRLLLDALGI--KKLAAVVGGSMGGMQALEWAIRYPDRVRRAIPIATA 181 (368)
T ss_pred cHHHHHHHHHHHHHhcCc--ceEeeeeccChHHHHHHHHHHhChHHHhhhheeccc
Confidence 356666666666554223 445 49999999999999999999999988888763
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.34 Score=51.29 Aligned_cols=168 Identities=13% Similarity=0.061 Sum_probs=101.9
Q ss_pred cceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCcc
Q 005240 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~ 84 (706)
+.|.+.++.. .+.+...+.+......+++|||+.++.+... .+...++++|..+++..+.......
T Consensus 96 ~~v~vid~~~------~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~-------~~~~~vsvid~~t~~~~~~~~vG~~- 161 (381)
T COG3391 96 NTVSVIDTAT------NTVLGSIPVGLGPVGLAVDPDGKYVYVANAG-------NGNNTVSVIDAATNKVTATIPVGNT- 161 (381)
T ss_pred CeEEEEcCcc------cceeeEeeeccCCceEEECCCCCEEEEEecc-------cCCceEEEEeCCCCeEEEEEecCCC-
Confidence 4555555422 3333334455567789999999999554320 1468899999888765544221111
Q ss_pred ccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc
Q 005240 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (706)
Q Consensus 85 ~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l 164 (706)
....+.+|+|+.++.... ....|..++.
T Consensus 162 ----P~~~a~~p~g~~vyv~~~------------------------------------------------~~~~v~vi~~ 189 (381)
T COG3391 162 ----PTGVAVDPDGNKVYVTNS------------------------------------------------DDNTVSVIDT 189 (381)
T ss_pred ----cceEEECCCCCeEEEEec------------------------------------------------CCCeEEEEeC
Confidence 356789999998776531 1256777777
Q ss_pred CC-Ccee------cCCCceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCccc
Q 005240 165 DG-TAKD------FGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCY 237 (706)
Q Consensus 165 ~g-~~~~------lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~ 237 (706)
++ ...+ +..+.....+.++|||++++....... ...+...+...+.+.......... .
T Consensus 190 ~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~----------~~~v~~id~~~~~v~~~~~~~~~~-~---- 254 (381)
T COG3391 190 SGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSG----------SNNVLKIDTATGNVTATDLPVGSG-A---- 254 (381)
T ss_pred CCcceeccccccccccCCCCceEEECCCCCEEEEEeccCC----------CceEEEEeCCCceEEEeccccccC-C----
Confidence 55 3332 222245568899999999977665431 247788888776655432211111 1
Q ss_pred CccCCCCcceeeecCCCceEEEE
Q 005240 238 NSVREGMRSISWRADKPSTLYWV 260 (706)
Q Consensus 238 ~~~~~g~~~~~~spdg~~~l~~~ 260 (706)
+..+..+|+|+. +|..
T Consensus 255 ------~~~v~~~p~g~~-~yv~ 270 (381)
T COG3391 255 ------PRGVAVDPAGKA-AYVA 270 (381)
T ss_pred ------CCceeECCCCCE-EEEE
Confidence 235688999986 5543
|
|
| >KOG2984 consensus Predicted hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0055 Score=55.68 Aligned_cols=77 Identities=21% Similarity=0.208 Sum_probs=55.9
Q ss_pred CCeEEEEcCCCCcCCCCCCCCch-hh-HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEE
Q 005240 554 RRFAVLAGPSIPIIGEGDKLPND-RF-VEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGI 631 (706)
Q Consensus 554 ~G~~v~~~~~~~~~g~g~~~~~~-~~-~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v 631 (706)
.-+.|+..+.. |||.+-..+ .+ .+-..+|...+++-+... +-.++-|+|||-||..|+.+|+++++.+.-.|
T Consensus 70 l~~TivawDPp---GYG~SrPP~Rkf~~~ff~~Da~~avdLM~aL---k~~~fsvlGWSdGgiTalivAak~~e~v~rmi 143 (277)
T KOG2984|consen 70 LQVTIVAWDPP---GYGTSRPPERKFEVQFFMKDAEYAVDLMEAL---KLEPFSVLGWSDGGITALIVAAKGKEKVNRMI 143 (277)
T ss_pred CceEEEEECCC---CCCCCCCCcccchHHHHHHhHHHHHHHHHHh---CCCCeeEeeecCCCeEEEEeeccChhhhhhhe
Confidence 44777774443 677765532 22 234567888888877664 44789999999999999999999999877776
Q ss_pred eccCC
Q 005240 632 ARSGS 636 (706)
Q Consensus 632 ~~~~~ 636 (706)
.+++.
T Consensus 144 iwga~ 148 (277)
T KOG2984|consen 144 IWGAA 148 (277)
T ss_pred eeccc
Confidence 66653
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.48 Score=44.77 Aligned_cols=71 Identities=13% Similarity=0.128 Sum_probs=44.6
Q ss_pred EEeecccccccceecCC-C-ceEEEEeeccccceEEEEEcCCCCCCCceeeecCcccccccCCC-CCceEeccCCCEEEE
Q 005240 293 ILHKLDLRFRSVSWCDD-S-LALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPG-SPMMTRTSTGTNVIA 369 (706)
Q Consensus 293 ~l~~~~~~~~~~~wspD-g-~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~s~dg~~l~~ 369 (706)
.|..+..-+.+++|.|. | .....++...++..-||..+.+...-+.++|.+ + |+ ...++||.-|..|++
T Consensus 202 ~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~--f------~~~~w~vSWS~sGn~LaV 273 (299)
T KOG1332|consen 202 TLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEE--F------PDVVWRVSWSLSGNILAV 273 (299)
T ss_pred hhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCccccccccc--C------CcceEEEEEeccccEEEE
Confidence 36677888999999997 2 122222333446777898886654334444422 1 12 224789999999888
Q ss_pred ee
Q 005240 370 KI 371 (706)
Q Consensus 370 ~~ 371 (706)
+.
T Consensus 274 s~ 275 (299)
T KOG1332|consen 274 SG 275 (299)
T ss_pred ec
Confidence 75
|
|
| >COG4757 Predicted alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0068 Score=56.53 Aligned_cols=113 Identities=18% Similarity=0.160 Sum_probs=69.7
Q ss_pred EEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCC
Q 005240 485 IKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSI 564 (706)
Q Consensus 485 ~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~ 564 (706)
+.+...||..+.+.+|--++ + .+-.+.+-|++ +.+.. ....+++..+++||.|+.-++|
T Consensus 8 ~~l~~~DG~~l~~~~~pA~~-~------~~g~~~va~a~-----------Gv~~~---fYRrfA~~a~~~Gf~Vlt~dyR 66 (281)
T COG4757 8 AHLPAPDGYSLPGQRFPADG-K------ASGRLVVAGAT-----------GVGQY---FYRRFAAAAAKAGFEVLTFDYR 66 (281)
T ss_pred cccccCCCccCccccccCCC-C------CCCcEEecccC-----------Ccchh---HhHHHHHHhhccCceEEEEecc
Confidence 56777899999999994433 1 22122233321 11111 1234667777899999996776
Q ss_pred CcCCCCCCCCc------hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCC
Q 005240 565 PIIGEGDKLPN------DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAP 624 (706)
Q Consensus 565 ~~~g~g~~~~~------~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p 624 (706)
|. |++-.. ..+.+-...|+.++++++.+.- -.......||||||.+.-. +..+|
T Consensus 67 G~---g~S~p~~~~~~~~~~~DwA~~D~~aal~~~~~~~--~~~P~y~vgHS~GGqa~gL-~~~~~ 126 (281)
T COG4757 67 GI---GQSRPASLSGSQWRYLDWARLDFPAALAALKKAL--PGHPLYFVGHSFGGQALGL-LGQHP 126 (281)
T ss_pred cc---cCCCccccccCccchhhhhhcchHHHHHHHHhhC--CCCceEEeeccccceeecc-cccCc
Confidence 44 433221 2344456789999999998742 2357899999999986543 34443
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.25 Score=47.77 Aligned_cols=221 Identities=14% Similarity=0.197 Sum_probs=117.9
Q ss_pred cccceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCe-----EEEEeeccccccccCCceeEEEEEcCCCceeec
Q 005240 3 FFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKR-----IAFSVRVDEEDNVSSCKLRVWIADAETGEAKPL 77 (706)
Q Consensus 3 ~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~-----laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l 77 (706)
+.+.|.|..|+. .+++-..-..++....++-.-|.||.+- ||.+ +..-.||.++.+.++.+..
T Consensus 71 ~~Nkvqiv~ld~--~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs----------~D~LRlWri~~ee~~~~~~ 138 (364)
T KOG0290|consen 71 YNNKVQIVQLDE--DSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATS----------SDFLRLWRIGDEESRVELQ 138 (364)
T ss_pred cCCeeEEEEEcc--CCCceeccCCCCCCCCccceEecCCccccCcchhhcc----------cCeEEEEeccCcCCceehh
Confidence 557788888876 4444443332222235677889999863 3332 3446788877655443322
Q ss_pred ---ccCCCccccccccceEEec-CCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhh
Q 005240 78 ---FESPDICLNAVFGSFVWVN-NSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDY 153 (706)
Q Consensus 78 ---t~~~~~~~~~~~~~~~wSp-Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 153 (706)
.........+...+|.|.. |-++|...+-+
T Consensus 139 ~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiD---------------------------------------------- 172 (364)
T KOG0290|consen 139 SVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSID---------------------------------------------- 172 (364)
T ss_pred hhhccCcccccCCcccccccccCCcceeEeeccc----------------------------------------------
Confidence 1111111222355788874 44544433210
Q ss_pred cccceEEEEcc-CC----CceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccC
Q 005240 154 YTTAQLVLGSL-DG----TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDL 227 (706)
Q Consensus 154 ~~~~~l~~~~l-~g----~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 227 (706)
+.+-++|+ .| --++|-.. ..+..++|+.+|..++ .+...+ ..+.++|+...+..++...
T Consensus 173 ---TTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~F-ASvgaD-----------GSvRmFDLR~leHSTIIYE 237 (364)
T KOG0290|consen 173 ---TTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVF-ASVGAD-----------GSVRMFDLRSLEHSTIIYE 237 (364)
T ss_pred ---CeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceE-EEecCC-----------CcEEEEEecccccceEEec
Confidence 33444455 33 12344444 6788999999888775 444332 3678888876555554443
Q ss_pred CCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceec
Q 005240 228 PPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWC 307 (706)
Q Consensus 228 ~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~ws 307 (706)
+.....| .-.++|++.....++.+. .+...|.++|+. ......-+|..+...+..++|.
T Consensus 238 ~p~~~~p---------LlRLswnkqDpnymATf~-----------~dS~~V~iLDiR-~P~tpva~L~~H~a~VNgIaWa 296 (364)
T KOG0290|consen 238 DPSPSTP---------LLRLSWNKQDPNYMATFA-----------MDSNKVVILDIR-VPCTPVARLRNHQASVNGIAWA 296 (364)
T ss_pred CCCCCCc---------ceeeccCcCCchHHhhhh-----------cCCceEEEEEec-CCCcceehhhcCcccccceEec
Confidence 3221111 125566665443122111 122246666662 1122334566778899999999
Q ss_pred CCCceEEEEe
Q 005240 308 DDSLALVNET 317 (706)
Q Consensus 308 pDg~~l~~~~ 317 (706)
|-...-+.+.
T Consensus 297 PhS~~hicta 306 (364)
T KOG0290|consen 297 PHSSSHICTA 306 (364)
T ss_pred CCCCceeeec
Confidence 9976555543
|
|
| >PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.012 Score=54.04 Aligned_cols=90 Identities=16% Similarity=0.118 Sum_probs=65.6
Q ss_pred CCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHH
Q 005240 536 SPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFM 615 (706)
Q Consensus 536 ~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~ 615 (706)
+|..+ ....+..|+++|+.|+-.+..- | |.....-++...|+..++++..++- ..+++.+.|.|+|+-+
T Consensus 13 Gw~~~---d~~~a~~l~~~G~~VvGvdsl~---Y---fw~~rtP~~~a~Dl~~~i~~y~~~w--~~~~vvLiGYSFGADv 81 (192)
T PF06057_consen 13 GWRDL---DKQIAEALAKQGVPVVGVDSLR---Y---FWSERTPEQTAADLARIIRHYRARW--GRKRVVLIGYSFGADV 81 (192)
T ss_pred Cchhh---hHHHHHHHHHCCCeEEEechHH---H---HhhhCCHHHHHHHHHHHHHHHHHHh--CCceEEEEeecCCchh
Confidence 55433 4567889999999999744431 1 2233345677899999999888762 3589999999999988
Q ss_pred HHHHHHhCCC----ceeEEEeccCC
Q 005240 616 TAHLLAHAPH----LFCCGIARSGS 636 (706)
Q Consensus 616 a~~~~~~~p~----~~~a~v~~~~~ 636 (706)
...+..+-|. +++.+++++|.
T Consensus 82 lP~~~nrLp~~~r~~v~~v~Ll~p~ 106 (192)
T PF06057_consen 82 LPFIYNRLPAALRARVAQVVLLSPS 106 (192)
T ss_pred HHHHHhhCCHHHHhheeEEEEeccC
Confidence 8888777655 57777777764
|
VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium []. |
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.076 Score=57.26 Aligned_cols=57 Identities=16% Similarity=0.243 Sum_probs=39.8
Q ss_pred ceeeeecCCCceeeeecccchhhhhhhhhhccCCCceecccCCCEEEEEEecCCCCcEEEEEECCCCce
Q 005240 396 FLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKS 464 (706)
Q Consensus 396 ~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~p~~v~~~~~~~~~~ 464 (706)
.+..+++.+|+.++.+.+..+.... + ..+...|.|.+|+.+.++-+ +-.+|..+|++
T Consensus 619 nirif~i~sgKq~k~FKgs~~~eG~-l-------IKv~lDPSgiY~atScsdkt----l~~~Df~sgEc 675 (1080)
T KOG1408|consen 619 NIRIFDIESGKQVKSFKGSRDHEGD-L-------IKVILDPSGIYLATSCSDKT----LCFVDFVSGEC 675 (1080)
T ss_pred ceEEEeccccceeeeecccccCCCc-e-------EEEEECCCccEEEEeecCCc----eEEEEeccchh
Confidence 4777999999999998775431111 1 13567788888888887776 77888777653
|
|
| >PF02273 Acyl_transf_2: Acyl transferase; InterPro: IPR003157 LuxD proteins are bacterial acyl transferases | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.086 Score=49.91 Aligned_cols=130 Identities=16% Similarity=0.091 Sum_probs=71.3
Q ss_pred EccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcC
Q 005240 488 QRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPII 567 (706)
Q Consensus 488 ~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~ 567 (706)
.-.+|..|..|-..|++-.+.+ .|.||..-| +......+--.+.+|+..||.|+..+.....
T Consensus 8 ~~~~~~~I~vwet~P~~~~~~~---~~tiliA~G---------------f~rrmdh~agLA~YL~~NGFhViRyDsl~Hv 69 (294)
T PF02273_consen 8 RLEDGRQIRVWETRPKNNEPKR---NNTILIAPG---------------FARRMDHFAGLAEYLSANGFHVIRYDSLNHV 69 (294)
T ss_dssp EETTTEEEEEEEE---TTS------S-EEEEE-T---------------T-GGGGGGHHHHHHHHTTT--EEEE---B--
T ss_pred EcCCCCEEEEeccCCCCCCccc---CCeEEEecc---------------hhHHHHHHHHHHHHHhhCCeEEEeccccccc
Confidence 3458999999999999744433 578887654 1112112224567788999999975544333
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCCCC
Q 005240 568 GEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKT 640 (706)
Q Consensus 568 g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d~~ 640 (706)
|-....-.+-.+.....|+..+++||.+.+. .++|++-.|.-|=+|...+.+- + ...+|...|+.|.+
T Consensus 70 GlSsG~I~eftms~g~~sL~~V~dwl~~~g~---~~~GLIAaSLSaRIAy~Va~~i-~-lsfLitaVGVVnlr 137 (294)
T PF02273_consen 70 GLSSGDINEFTMSIGKASLLTVIDWLATRGI---RRIGLIAASLSARIAYEVAADI-N-LSFLITAVGVVNLR 137 (294)
T ss_dssp -----------HHHHHHHHHHHHHHHHHTT------EEEEEETTHHHHHHHHTTTS----SEEEEES--S-HH
T ss_pred cCCCCChhhcchHHhHHHHHHHHHHHHhcCC---CcchhhhhhhhHHHHHHHhhcc-C-cceEEEEeeeeeHH
Confidence 4322222334456678899999999998763 6799999999999999999854 4 66667777887643
|
Together with an acyl-protein synthetase (LuxE) and reductase (LuxC), they form a multienzyme complex. This complex channels activated fatty acids into the aldehyde substrate for the luciferase-catalyzed bacterial bioluminescence reaction [, ]. ; GO: 0016746 transferase activity, transferring acyl groups, 0006631 fatty acid metabolic process; PDB: 1THT_B. |
| >PF11144 DUF2920: Protein of unknown function (DUF2920); InterPro: IPR022605 This bacterial family of proteins has no known function | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.021 Score=58.79 Aligned_cols=58 Identities=17% Similarity=0.013 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHcCC--CCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCC
Q 005240 579 VEQLVSSAEAAVEEVVRRGV--ADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 636 (706)
Q Consensus 579 ~~~~~~D~~~~~~~l~~~~~--id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~ 636 (706)
+=-.+-|++-|+.++.++-. -+.-++.++|+|+||||+..++--.|..|.+++..++.
T Consensus 159 GIMqAiD~INAl~~l~k~~~~~~~~lp~I~~G~s~G~yla~l~~k~aP~~~~~~iDns~~ 218 (403)
T PF11144_consen 159 GIMQAIDIINALLDLKKIFPKNGGGLPKIYIGSSHGGYLAHLCAKIAPWLFDGVIDNSSY 218 (403)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccCCCcEEEEecCcHHHHHHHHHhhCccceeEEEecCcc
Confidence 33447899999999998722 23459999999999999999999999999999988864
|
|
| >KOG2182 consensus Hydrolytic enzymes of the alpha/beta hydrolase fold [Posttranslational modification, protein turnover, chaperones; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.026 Score=58.95 Aligned_cols=142 Identities=14% Similarity=0.091 Sum_probs=93.3
Q ss_pred CceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHH-HCCeEE
Q 005240 480 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFL-ARRFAV 558 (706)
Q Consensus 480 ~~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~G~~v 558 (706)
.+.+.-.+.+.++.-.+=++|.+..+.... -|+.|++-|.+. ..+.|.+... ..+ ..|| +.|-.|
T Consensus 56 ~~Q~lDhF~~~~~~~~Qq~~y~n~~~~~~~---gPiFLmIGGEgp--------~~~~wv~~~~--~~~-~~~AkkfgA~v 121 (514)
T KOG2182|consen 56 FTQKLDHFDSSNGKFFQQRFYNNNQWAKPG---GPIFLMIGGEGP--------ESDKWVGNEN--LTW-LQWAKKFGATV 121 (514)
T ss_pred hhhhhhhhhcchhhhhhhheeeccccccCC---CceEEEEcCCCC--------CCCCccccCc--chH-HHHHHHhCCee
Confidence 344444455555666667788888764222 489999987632 2233444422 123 3445 588888
Q ss_pred EEcCCCCcCCCCCCCCc-------hh--hHHHHHHHHHHHHHHHHHc-CCCCCCcEEEEEechHHHHHHHHHHhCCCcee
Q 005240 559 LAGPSIPIIGEGDKLPN-------DR--FVEQLVSSAEAAVEEVVRR-GVADPSRIAVGGHSYGAFMTAHLLAHAPHLFC 628 (706)
Q Consensus 559 ~~~~~~~~~g~g~~~~~-------~~--~~~~~~~D~~~~~~~l~~~-~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~ 628 (706)
+.... +=||++... .. ...+++.|+...|+.+..+ ++-|+.+.+.+|.||=|.|++|.=..+|+++.
T Consensus 122 ~~lEH---RFYG~S~P~~~~st~nlk~LSs~QALaDla~fI~~~n~k~n~~~~~~WitFGgSYsGsLsAW~R~~yPel~~ 198 (514)
T KOG2182|consen 122 FQLEH---RFYGQSSPIGDLSTSNLKYLSSLQALADLAEFIKAMNAKFNFSDDSKWITFGGSYSGSLSAWFREKYPELTV 198 (514)
T ss_pred EEeee---eccccCCCCCCCcccchhhhhHHHHHHHHHHHHHHHHhhcCCCCCCCeEEECCCchhHHHHHHHHhCchhhe
Confidence 76211 124444321 11 2447899999999999776 46677799999999999999999999999988
Q ss_pred EEEeccCCCC
Q 005240 629 CGIARSGSYN 638 (706)
Q Consensus 629 a~v~~~~~~d 638 (706)
++|+.++...
T Consensus 199 GsvASSapv~ 208 (514)
T KOG2182|consen 199 GSVASSAPVL 208 (514)
T ss_pred eeccccccee
Confidence 8887776543
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=96.33 E-value=1.7 Score=45.45 Aligned_cols=57 Identities=7% Similarity=0.130 Sum_probs=35.7
Q ss_pred ccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceee--cccCCCccccccccceEEecCCcEE
Q 005240 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKP--LFESPDICLNAVFGSFVWVNNSTLL 101 (706)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~--lt~~~~~~~~~~~~~~~wSpDg~~l 101 (706)
+..+.|.|-+..|..+ -++..|+.++++++...+ -+..... ...+....|.+||+.|
T Consensus 203 v~~a~FHPtd~nliit----------~Gk~H~~Fw~~~~~~l~k~~~~fek~e--kk~Vl~v~F~engdvi 261 (626)
T KOG2106|consen 203 VFLATFHPTDPNLIIT----------CGKGHLYFWTLRGGSLVKRQGIFEKRE--KKFVLCVTFLENGDVI 261 (626)
T ss_pred EEEEEeccCCCcEEEE----------eCCceEEEEEccCCceEEEeecccccc--ceEEEEEEEcCCCCEE
Confidence 5667899988777665 456788888888775322 2222111 1225577788888753
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.95 Score=42.04 Aligned_cols=21 Identities=14% Similarity=-0.001 Sum_probs=17.4
Q ss_pred ceEeeeeeCCCCcEEEEEeec
Q 005240 175 AVYTAVEPSPDQKYVLITSMH 195 (706)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~ 195 (706)
+.+...+|||+|+.|+-.+++
T Consensus 90 gsiyc~~ws~~geliatgsnd 110 (350)
T KOG0641|consen 90 GSIYCTAWSPCGELIATGSND 110 (350)
T ss_pred ccEEEEEecCccCeEEecCCC
Confidence 577789999999999876655
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.22 Score=48.09 Aligned_cols=195 Identities=18% Similarity=0.172 Sum_probs=108.8
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCc-----eeecccCCCccccccccceEEecCCcEEEEEec
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-----AKPLFESPDICLNAVFGSFVWVNNSTLLIFTIP 106 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~-----~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~ 106 (706)
.++..+=||-.++|..+...+-.+...-....||.++-+-+. ..++...+..... .+..+.|-||++.|+...+
T Consensus 65 Evw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg-~i~cvew~Pns~klasm~d 143 (370)
T KOG1007|consen 65 EVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVG-KINCVEWEPNSDKLASMDD 143 (370)
T ss_pred ceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhC-ceeeEEEcCCCCeeEEecc
Confidence 577788899777776655421111111134668887754333 3334333322111 2568899999999887631
Q ss_pred CCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CC-C-ceecCCC------ceE
Q 005240 107 SSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-T-AKDFGTP------AVY 177 (706)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g-~-~~~lt~~------~~~ 177 (706)
..|.++++ .+ + ...+... ...
T Consensus 144 --------------------------------------------------n~i~l~~l~ess~~vaev~ss~s~e~~~~f 173 (370)
T KOG1007|consen 144 --------------------------------------------------NNIVLWSLDESSKIVAEVLSSESAEMRHSF 173 (370)
T ss_pred --------------------------------------------------CceEEEEcccCcchheeeccccccccccee
Confidence 34555565 22 2 1222111 245
Q ss_pred eeeeeCC--CCcEEEEEeeccCcccccccccccceEEEEecCCCe-eEEcccCCCCCCCCcccCccCCCCcceeeecCCC
Q 005240 178 TAVEPSP--DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL-VRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (706)
Q Consensus 178 ~~~~~Sp--DG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~ 254 (706)
.+-+||| ||..++.+... .+.-||+.+.+ .-.+.+..+ .-++++.|.|+.+
T Consensus 174 tsg~WspHHdgnqv~tt~d~--------------tl~~~D~RT~~~~~sI~dAHg------------q~vrdlDfNpnkq 227 (370)
T KOG1007|consen 174 TSGAWSPHHDGNQVATTSDS--------------TLQFWDLRTMKKNNSIEDAHG------------QRVRDLDFNPNKQ 227 (370)
T ss_pred cccccCCCCccceEEEeCCC--------------cEEEEEccchhhhcchhhhhc------------ceeeeccCCCCce
Confidence 6778999 89998866543 57778876432 111111111 1155788999987
Q ss_pred ceEEEEEeccCCCCccccCccceeeeecCCCCCCCC-ceEEeecccccccceecCCCceEEEEe
Q 005240 255 STLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEK-PEILHKLDLRFRSVSWCDDSLALVNET 317 (706)
Q Consensus 255 ~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-~~~l~~~~~~~~~~~wspDg~~l~~~~ 317 (706)
..|+ .. ++. ..|.+||.. .+.. ++.|..+.--+..+.|.|---.|+...
T Consensus 228 ~~lv-t~----gDd-------gyvriWD~R--~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~ 277 (370)
T KOG1007|consen 228 HILV-TC----GDD-------GYVRIWDTR--KTKFPVQELPGHSHWVWAVRFNPEHDQLILSG 277 (370)
T ss_pred EEEE-Ec----CCC-------ccEEEEecc--CCCccccccCCCceEEEEEEecCccceEEEec
Confidence 6333 21 222 247788773 2333 344566677788888888866666543
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.15 Score=52.74 Aligned_cols=137 Identities=13% Similarity=0.152 Sum_probs=86.9
Q ss_pred ceEEEEcc-CC-CceecCCC--ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCC
Q 005240 157 AQLVLGSL-DG-TAKDFGTP--AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAED 232 (706)
Q Consensus 157 ~~l~~~~l-~g-~~~~lt~~--~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~ 232 (706)
++|.+..+ ++ ..+.++.+ ..++-+.+||-.+.++.+.... ..+-+||+.|....--.. -...
T Consensus 143 Gdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~------------G~VtlwDv~g~sp~~~~~--~~Hs 208 (673)
T KOG4378|consen 143 GDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDK------------GAVTLWDVQGMSPIFHAS--EAHS 208 (673)
T ss_pred CcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccC------------CeEEEEeccCCCcccchh--hhcc
Confidence 67777777 45 55556555 4566889999999888766553 378899998764322111 1111
Q ss_pred CCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCce
Q 005240 233 IPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLA 312 (706)
Q Consensus 233 ~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~ 312 (706)
.| -+.+.|||.... |+... +-+. .|+++|. ...+...-.........++|+++|.+
T Consensus 209 AP---------~~gicfspsne~-l~vsV---G~Dk--------ki~~yD~---~s~~s~~~l~y~~Plstvaf~~~G~~ 264 (673)
T KOG4378|consen 209 AP---------CRGICFSPSNEA-LLVSV---GYDK--------KINIYDI---RSQASTDRLTYSHPLSTVAFSECGTY 264 (673)
T ss_pred CC---------cCcceecCCccc-eEEEe---cccc--------eEEEeec---ccccccceeeecCCcceeeecCCceE
Confidence 12 237899998886 43221 2222 4888887 32222222234566788999999999
Q ss_pred EEEEeeccccceEEEEEcCCCCC
Q 005240 313 LVNETWYKTSQTRTWLVCPGSKD 335 (706)
Q Consensus 313 l~~~~~~~~~~~~l~~~d~~~~~ 335 (706)
|+... ...+|+.+|+.+.+
T Consensus 265 L~aG~----s~G~~i~YD~R~~k 283 (673)
T KOG4378|consen 265 LCAGN----SKGELIAYDMRSTK 283 (673)
T ss_pred EEeec----CCceEEEEecccCC
Confidence 88764 34579999998853
|
|
| >PF01674 Lipase_2: Lipase (class 2); InterPro: IPR002918 Lipases or triacylglycerol acylhydrolases hydrolyse ester bonds in triacylglycerol giving diacylglycerol, monoacylglycerol, glycerol and free fatty acids [] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.02 Score=54.70 Aligned_cols=71 Identities=17% Similarity=0.195 Sum_probs=39.5
Q ss_pred hHHHHHHHCCeE---EEEcCCCCcCCCCCCCCchhh---HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHH
Q 005240 546 TSSLIFLARRFA---VLAGPSIPIIGEGDKLPNDRF---VEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHL 619 (706)
Q Consensus 546 ~~~~~l~~~G~~---v~~~~~~~~~g~g~~~~~~~~---~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~ 619 (706)
..+..|.+.||. |+..++- .+........ .-+....+.+.|+.+++. ... ||=|.|||+||.++-++
T Consensus 20 ~~~~~l~~~GY~~~~vya~tyg----~~~~~~~~~~~~~~~~~~~~l~~fI~~Vl~~--TGa-kVDIVgHS~G~~iaR~y 92 (219)
T PF01674_consen 20 TLAPYLKAAGYCDSEVYALTYG----SGNGSPSVQNAHMSCESAKQLRAFIDAVLAY--TGA-KVDIVGHSMGGTIARYY 92 (219)
T ss_dssp HHHHHHHHTT--CCCEEEE--S-----CCHHTHHHHHHB-HHHHHHHHHHHHHHHHH--HT---EEEEEETCHHHHHHHH
T ss_pred HHHHHHHHcCCCcceeEeccCC----CCCCCCcccccccchhhHHHHHHHHHHHHHh--hCC-EEEEEEcCCcCHHHHHH
Confidence 456789999999 5764441 1111011111 112345666666666654 335 89999999999999998
Q ss_pred HHhC
Q 005240 620 LAHA 623 (706)
Q Consensus 620 ~~~~ 623 (706)
+...
T Consensus 93 i~~~ 96 (219)
T PF01674_consen 93 IKGG 96 (219)
T ss_dssp HHHC
T ss_pred HHHc
Confidence 8643
|
This group of lipases has been called class 2 as they are not clearly related to other lipase families, and includes LipA and LipB from Bacillus subtilis [] and uncharacterised proteins from Caenorhabditis.; PDB: 2VTV_B 2X76_A 2X5X_A 2QXU_A 3QMM_A 1I6W_A 3D2C_J 2QXT_B 1R50_A 1T2N_A .... |
| >KOG2183 consensus Prolylcarboxypeptidase (angiotensinase C) [Posttranslational modification, protein turnover, chaperones; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.029 Score=56.95 Aligned_cols=59 Identities=22% Similarity=0.237 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCcee-EEEeccCCC
Q 005240 579 VEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFC-CGIARSGSY 637 (706)
Q Consensus 579 ~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~-a~v~~~~~~ 637 (706)
-++.+.|....+.+|++........|+++|+||||+|++|.=.++|.++. |.++.+|+.
T Consensus 144 seQALADfA~ll~~lK~~~~a~~~pvIafGGSYGGMLaAWfRlKYPHiv~GAlAaSAPvl 203 (492)
T KOG2183|consen 144 SEQALADFAELLTFLKRDLSAEASPVIAFGGSYGGMLAAWFRLKYPHIVLGALAASAPVL 203 (492)
T ss_pred HHHHHHHHHHHHHHHhhccccccCcEEEecCchhhHHHHHHHhcChhhhhhhhhccCceE
Confidence 45779999999999988744556899999999999999999999999766 555556654
|
|
| >PF07082 DUF1350: Protein of unknown function (DUF1350); InterPro: IPR010765 This family consists of several hypothetical proteins from both cyanobacteria and plants | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.049 Score=52.21 Aligned_cols=74 Identities=19% Similarity=0.231 Sum_probs=51.2
Q ss_pred hHHHHHHHCCeEEEEcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCC--cEEEEEechHHHHHHHHHHhC
Q 005240 546 TSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPS--RIAVGGHSYGAFMTAHLLAHA 623 (706)
Q Consensus 546 ~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~id~~--~i~i~G~S~GG~~a~~~~~~~ 623 (706)
.+.+.|+++||+|++.++.. .|............+..+++.|.++...++. .+.=.|||+|+-+-+.+...+
T Consensus 38 ~lLe~La~~Gy~ViAtPy~~------tfDH~~~A~~~~~~f~~~~~~L~~~~~~~~~~lP~~~vGHSlGcklhlLi~s~~ 111 (250)
T PF07082_consen 38 YLLERLADRGYAVIATPYVV------TFDHQAIAREVWERFERCLRALQKRGGLDPAYLPVYGVGHSLGCKLHLLIGSLF 111 (250)
T ss_pred HHHHHHHhCCcEEEEEecCC------CCcHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCeeeeecccchHHHHHHhhhc
Confidence 45577889999999955532 2233333445566677778888776544433 677899999999999988776
Q ss_pred CC
Q 005240 624 PH 625 (706)
Q Consensus 624 p~ 625 (706)
+.
T Consensus 112 ~~ 113 (250)
T PF07082_consen 112 DV 113 (250)
T ss_pred cC
Confidence 43
|
Members of this family are typically around 250 residues in length. The function of this family is unknown but the species distribution indicates that the family may be involved in photosynthesis. |
| >PRK04940 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.08 Score=48.53 Aligned_cols=85 Identities=9% Similarity=0.031 Sum_probs=53.0
Q ss_pred CcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCCCC-------CCCccch---H----------------------H
Q 005240 602 SRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKT-------LTPFGFQ---A----------------------E 649 (706)
Q Consensus 602 ~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d~~-------~~~~~~~---~----------------------~ 649 (706)
++++|+|.|+|||.|.+++.++. ++|++ .+|..... ..+..|. . |
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g--~~aVL-iNPAv~P~~~L~~~ig~~~~y~~~~~~h~~eL~~~~p~r~~vllq~gDE 136 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCG--IRQVI-FNPNLFPEENMEGKIDRPEEYADIATKCVTNFREKNRDRCLVILSRNDE 136 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHC--CCEEE-ECCCCChHHHHHHHhCCCcchhhhhHHHHHHhhhcCcccEEEEEeCCCc
Confidence 46999999999999999999993 45554 45554321 0011110 0 0
Q ss_pred --HHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 005240 650 --RFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQ 692 (706)
Q Consensus 650 --~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~~ 692 (706)
.+.++.....--.+..+.+|.+|.|.. -.+....|++|+.
T Consensus 137 vLDyr~a~~~y~~~y~~~v~~GGdH~f~~---fe~~l~~I~~F~~ 178 (180)
T PRK04940 137 VLDSQRTAEELHPYYEIVWDEEQTHKFKN---ISPHLQRIKAFKT 178 (180)
T ss_pred ccCHHHHHHHhccCceEEEECCCCCCCCC---HHHHHHHHHHHHh
Confidence 333333332222368899999999975 3456777888874
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.15 Score=50.97 Aligned_cols=126 Identities=13% Similarity=0.205 Sum_probs=77.2
Q ss_pred eecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCe--eEEcccCCCCCCCCcccCccCCCCc
Q 005240 169 KDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL--VRELCDLPPAEDIPVCYNSVREGMR 245 (706)
Q Consensus 169 ~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~l~~~~~~~~~p~~~~~~~~g~~ 245 (706)
++++.. ..+..+.|||..+.++++.... ..|.+||+..+. ...++.....+ +.
T Consensus 251 ~Pf~gH~~SVEDLqWSptE~~vfaScS~D------------gsIrIWDiRs~~~~~~~~~kAh~sD------------VN 306 (440)
T KOG0302|consen 251 RPFTGHTKSVEDLQWSPTEDGVFASCSCD------------GSIRIWDIRSGPKKAAVSTKAHNSD------------VN 306 (440)
T ss_pred ccccccccchhhhccCCccCceEEeeecC------------ceEEEEEecCCCccceeEeeccCCc------------ee
Confidence 344444 5678999999999998777653 378999987542 22222221111 23
Q ss_pred ceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEe-ecccccccceecCCCceEEEEeeccccce
Q 005240 246 SISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH-KLDLRFRSVSWCDDSLALVNETWYKTSQT 324 (706)
Q Consensus 246 ~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~-~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 324 (706)
-++|+-+-.. |+. ++ +.+.+-+||+..+..+++...+ .+...+..+.|+|.-..++.++.. +.+.
T Consensus 307 VISWnr~~~l-Las-----G~-------DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~-D~Qi 372 (440)
T KOG0302|consen 307 VISWNRREPL-LAS-----GG-------DDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGE-DNQI 372 (440)
T ss_pred eEEccCCcce-eee-----cC-------CCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccC-CCcE
Confidence 5688866552 432 22 2345888999767777766544 568889999999975444443322 2445
Q ss_pred EEEEEcCC
Q 005240 325 RTWLVCPG 332 (706)
Q Consensus 325 ~l~~~d~~ 332 (706)
.||-+.++
T Consensus 373 tiWDlsvE 380 (440)
T KOG0302|consen 373 TIWDLSVE 380 (440)
T ss_pred EEEEeecc
Confidence 56665544
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.11 Score=56.70 Aligned_cols=202 Identities=12% Similarity=0.145 Sum_probs=121.2
Q ss_pred ceeEeecCCCCCCCCeeeeecCCCCC-cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCcc
Q 005240 6 GIGIHRLLPDDSLGPEKEVHGYPDGA-KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (706)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~i~~~~~~~-~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~ 84 (706)
.|.++||... +..++++.+.+.. .+..+.|++---.|..+... ++...+ +|+...+.+..++....
T Consensus 111 ~i~vWdlnk~---~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQ-------Dg~vK~--~DlR~~~S~~t~~~nSE- 177 (839)
T KOG0269|consen 111 VISVWDLNKS---IRNKLLTVFNEHERSANKLDFHSTEPNILISGSQ-------DGTVKC--WDLRSKKSKSTFRSNSE- 177 (839)
T ss_pred cEEEEecCcc---ccchhhhHhhhhccceeeeeeccCCccEEEecCC-------CceEEE--Eeeecccccccccccch-
Confidence 5788999653 5566766555443 67788999988888776542 444445 56666665666554332
Q ss_pred ccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc
Q 005240 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (706)
Q Consensus 85 ~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l 164 (706)
.++++.|||--...++...+ .+.|-++|+
T Consensus 178 ---SiRDV~fsp~~~~~F~s~~d------------------------------------------------sG~lqlWDl 206 (839)
T KOG0269|consen 178 ---SIRDVKFSPGYGNKFASIHD------------------------------------------------SGYLQLWDL 206 (839)
T ss_pred ---hhhceeeccCCCceEEEecC------------------------------------------------CceEEEeec
Confidence 37899999855433333221 145666677
Q ss_pred CC---CceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEc-ccCCCCCCCCcccCc
Q 005240 165 DG---TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVREL-CDLPPAEDIPVCYNS 239 (706)
Q Consensus 165 ~g---~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l-~~~~~~~~~p~~~~~ 239 (706)
.- -..+++.. +.+..+.|+|++.+||-.. + ...+.+|+..+.+...+ +-...+ |
T Consensus 207 Rqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGG-R------------DK~vkiWd~t~~~~~~~~tInTia---p----- 265 (839)
T KOG0269|consen 207 RQPDRCEKKLTAHNGPVLCLNWHPNREWLATGG-R------------DKMVKIWDMTDSRAKPKHTINTIA---P----- 265 (839)
T ss_pred cCchhHHHHhhcccCceEEEeecCCCceeeecC-C------------CccEEEEeccCCCccceeEEeecc---e-----
Confidence 32 34566666 7889999999999998544 2 24899999986554332 211111 1
Q ss_pred cCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCc-eEEeecccccccceecC
Q 005240 240 VREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP-EILHKLDLRFRSVSWCD 308 (706)
Q Consensus 240 ~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~-~~l~~~~~~~~~~~wsp 308 (706)
+..+.|.|+.+..|+-.+.- ....|++||+. .-=-+ ..+..+...+..+.|..
T Consensus 266 ----v~rVkWRP~~~~hLAtcsmv----------~dtsV~VWDvr--RPYIP~~t~~eH~~~vt~i~W~~ 319 (839)
T KOG0269|consen 266 ----VGRVKWRPARSYHLATCSMV----------VDTSVHVWDVR--RPYIPYATFLEHTDSVTGIAWDS 319 (839)
T ss_pred ----eeeeeeccCccchhhhhhcc----------ccceEEEEeec--cccccceeeeccCccccceeccC
Confidence 33779999998756533211 11247888872 00011 12334455666777754
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.014 Score=57.69 Aligned_cols=81 Identities=9% Similarity=0.115 Sum_probs=52.2
Q ss_pred cceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCC-CceeecccCCCc
Q 005240 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAET-GEAKPLFESPDI 83 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~-g~~~~lt~~~~~ 83 (706)
.+|+|+|+-+ +.+++++..+..-..+.|+| +-..|+.. +...+||.+|... ..+..+..+..
T Consensus 210 rsIvLyD~R~------~~Pl~KVi~~mRTN~IswnP--eafnF~~a--------~ED~nlY~~DmR~l~~p~~v~~dhv- 272 (433)
T KOG0268|consen 210 RSIVLYDLRQ------ASPLKKVILTMRTNTICWNP--EAFNFVAA--------NEDHNLYTYDMRNLSRPLNVHKDHV- 272 (433)
T ss_pred CceEEEeccc------CCccceeeeeccccceecCc--cccceeec--------cccccceehhhhhhcccchhhcccc-
Confidence 5788988844 45555555555566899999 44456553 5568999999754 23333332221
Q ss_pred cccccccceEEecCCcEEEEEe
Q 005240 84 CLNAVFGSFVWVNNSTLLIFTI 105 (706)
Q Consensus 84 ~~~~~~~~~~wSpDg~~l~~~~ 105 (706)
+ .+-++.+||-|+-++..+
T Consensus 273 --s-AV~dVdfsptG~Efvsgs 291 (433)
T KOG0268|consen 273 --S-AVMDVDFSPTGQEFVSGS 291 (433)
T ss_pred --e-eEEEeccCCCcchhcccc
Confidence 1 266889999999877554
|
|
| >COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.021 Score=56.26 Aligned_cols=36 Identities=17% Similarity=0.180 Sum_probs=32.5
Q ss_pred CcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCC
Q 005240 602 SRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSY 637 (706)
Q Consensus 602 ~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~ 637 (706)
.++.+.|||+||.+++.++.++|+++++++..++..
T Consensus 88 ~~~~l~G~S~Gg~~~~~~~~~~p~~~~~~v~~~~~~ 123 (282)
T COG0596 88 EKVVLVGHSMGGAVALALALRHPDRVRGLVLIGPAP 123 (282)
T ss_pred CceEEEEecccHHHHHHHHHhcchhhheeeEecCCC
Confidence 349999999999999999999999999999988654
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.048 Score=58.21 Aligned_cols=48 Identities=21% Similarity=0.277 Sum_probs=36.3
Q ss_pred ceEEEEcc-CC-CceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecC
Q 005240 157 AQLVLGSL-DG-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD 217 (706)
Q Consensus 157 ~~l~~~~l-~g-~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 217 (706)
..|+++|. +| ..+.|-.. ..+..++||.||++.+-.+.+ ..+.+|+..
T Consensus 33 ~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aD-------------K~VI~W~~k 83 (1081)
T KOG1538|consen 33 SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSAD-------------KSVIIWTSK 83 (1081)
T ss_pred CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCc-------------eeEEEeccc
Confidence 68999999 77 77777766 778899999999997633322 367778765
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.02 E-value=1.3 Score=41.19 Aligned_cols=49 Identities=12% Similarity=0.077 Sum_probs=34.2
Q ss_pred eeecCCCCCCCCceE-EeecccccccceecCCCceEEEEeeccccceEEEEEcCCCC
Q 005240 279 YTQPAEPAEGEKPEI-LHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK 334 (706)
Q Consensus 279 ~~~d~~~~~~~~~~~-l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~ 334 (706)
.++|+ .++.+.+ ...+...+..+.|||...+++..+ ....|-+-|+.+.
T Consensus 256 ~lydi---rg~r~iq~f~phsadir~vrfsp~a~yllt~s----yd~~ikltdlqgd 305 (350)
T KOG0641|consen 256 MLYDI---RGGRMIQRFHPHSADIRCVRFSPGAHYLLTCS----YDMKIKLTDLQGD 305 (350)
T ss_pred EEEEe---eCCceeeeeCCCccceeEEEeCCCceEEEEec----ccceEEEeecccc
Confidence 35566 5666554 456678889999999988887654 2345777777763
|
|
| >PRK13614 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.7 Score=50.93 Aligned_cols=68 Identities=10% Similarity=0.069 Sum_probs=43.3
Q ss_pred CCeeeeecCCCC--CcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEec
Q 005240 19 GPEKEVHGYPDG--AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVN 96 (706)
Q Consensus 19 g~~~~i~~~~~~--~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSp 96 (706)
+...++.+.... .....++.|+||+.+|+.. .....||+... ++..+.+..... ...+.|.+
T Consensus 329 ~~~~pv~g~~g~~~~~~~s~avS~~g~~~A~~~---------~~~~~l~~~~~-g~~~~~~~~g~~------Lt~PS~d~ 392 (573)
T PRK13614 329 GQISPLPDIQSVAGLGPASPAESPVSQTVAFLN---------GSRTTLYTVSP-GQPARALTSGST------LTRPSFSP 392 (573)
T ss_pred CCcccCCCccCcCcccccceeecCCCceEEEec---------CCCcEEEEecC-CCcceeeecCCC------ccCCcccC
Confidence 445555444321 2567889999999999974 22358887765 445555543332 66788988
Q ss_pred CCcEEEE
Q 005240 97 NSTLLIF 103 (706)
Q Consensus 97 Dg~~l~~ 103 (706)
+| ++..
T Consensus 393 ~g-~vWt 398 (573)
T PRK13614 393 QD-WVWT 398 (573)
T ss_pred CC-CEEE
Confidence 88 4443
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.44 Score=48.07 Aligned_cols=136 Identities=13% Similarity=0.047 Sum_probs=76.3
Q ss_pred ceEEEEcc-CC-CceecCCCceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcc-cCCCCCCC
Q 005240 157 AQLVLGSL-DG-TAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELC-DLPPAEDI 233 (706)
Q Consensus 157 ~~l~~~~l-~g-~~~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~-~~~~~~~~ 233 (706)
..+.++++ +| ....|.-...+.++.|+-||.+|+-+..+ ..|.+||.-.+++..-. .+.++.
T Consensus 154 n~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckD-------------KkvRv~dpr~~~~v~e~~~heG~k-- 218 (472)
T KOG0303|consen 154 NTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKD-------------KKVRVIDPRRGTVVSEGVAHEGAK-- 218 (472)
T ss_pred ceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeeccc-------------ceeEEEcCCCCcEeeecccccCCC--
Confidence 57888898 67 45556634788899999999999866654 47999998866544332 222211
Q ss_pred CcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEe--ecccccccceecCCCc
Q 005240 234 PVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH--KLDLRFRSVSWCDDSL 311 (706)
Q Consensus 234 p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~--~~~~~~~~~~wspDg~ 311 (706)
.....|-.+|+ |+-+- ...... ..+-+||.+.+ .++-.+. ..+..+--|-|-+|.+
T Consensus 219 ----------~~Raifl~~g~--i~tTG-fsr~se-------Rq~aLwdp~nl--~eP~~~~elDtSnGvl~PFyD~dt~ 276 (472)
T KOG0303|consen 219 ----------PARAIFLASGK--IFTTG-FSRMSE-------RQIALWDPNNL--EEPIALQELDTSNGVLLPFYDPDTS 276 (472)
T ss_pred ----------cceeEEeccCc--eeeec-cccccc-------cceeccCcccc--cCcceeEEeccCCceEEeeecCCCC
Confidence 11445777765 33221 111111 13556665322 2332222 2334455667888877
Q ss_pred eEEEEeeccccceEEEEEc
Q 005240 312 ALVNETWYKTSQTRTWLVC 330 (706)
Q Consensus 312 ~l~~~~~~~~~~~~l~~~d 330 (706)
.||... ..++..+-|.+.
T Consensus 277 ivYl~G-KGD~~IRYyEit 294 (472)
T KOG0303|consen 277 IVYLCG-KGDSSIRYFEIT 294 (472)
T ss_pred EEEEEe-cCCcceEEEEec
Confidence 666553 333455555554
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.00 E-value=1.7 Score=42.34 Aligned_cols=132 Identities=14% Similarity=0.080 Sum_probs=71.3
Q ss_pred ceEEEEccCC--CceecCCC---ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCC
Q 005240 157 AQLVLGSLDG--TAKDFGTP---AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAE 231 (706)
Q Consensus 157 ~~l~~~~l~g--~~~~lt~~---~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~ 231 (706)
..-+++|.++ ++..+... ..+.--.|||||++|+-+.++.... ..-|-+||.. ....++...+...
T Consensus 91 tf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~--------rGViGvYd~r-~~fqrvgE~~t~G 161 (366)
T COG3490 91 TFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPN--------RGVIGVYDAR-EGFQRVGEFSTHG 161 (366)
T ss_pred ceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCC--------CceEEEEecc-cccceecccccCC
Confidence 4567778855 55555443 3455667999999998777654321 1357788876 2233433322211
Q ss_pred CCCcccCccCCCCcceeeecCCCceEEEEEeccCCC---------CccccCccceeeeecCCCCCCCCc-eE--Eee--c
Q 005240 232 DIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGD---------ANVEVSPRDIIYTQPAEPAEGEKP-EI--LHK--L 297 (706)
Q Consensus 232 ~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~---------~~~~~~~~~~l~~~d~~~~~~~~~-~~--l~~--~ 297 (706)
-|+..+.|.+||+. |+.. +++- +-+...+...+.++|. .+|++ ++ |.. .
T Consensus 162 ----------iGpHev~lm~DGrt-lvva---nGGIethpdfgR~~lNldsMePSlvlld~---atG~liekh~Lp~~l~ 224 (366)
T COG3490 162 ----------IGPHEVTLMADGRT-LVVA---NGGIETHPDFGRTELNLDSMEPSLVLLDA---ATGNLIEKHTLPASLR 224 (366)
T ss_pred ----------cCcceeEEecCCcE-EEEe---CCceecccccCccccchhhcCccEEEEec---cccchhhhccCchhhh
Confidence 23457899999997 5533 2221 1111122334666664 34432 22 331 1
Q ss_pred ccccccceecCCCceEE
Q 005240 298 DLRFRSVSWCDDSLALV 314 (706)
Q Consensus 298 ~~~~~~~~wspDg~~l~ 314 (706)
...+..+..-+||+.++
T Consensus 225 ~lSiRHld~g~dgtvwf 241 (366)
T COG3490 225 QLSIRHLDIGRDGTVWF 241 (366)
T ss_pred hcceeeeeeCCCCcEEE
Confidence 23455666777887544
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.00 E-value=1.7 Score=42.32 Aligned_cols=118 Identities=13% Similarity=0.070 Sum_probs=67.0
Q ss_pred CCeeeeecCCCCCcccceeeCCCCC-eEEEEeeccccccccCCceeEEEEEcCCCceeec-ccCCCccccccccceEEec
Q 005240 19 GPEKEVHGYPDGAKINFVSWSPDGK-RIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPL-FESPDICLNAVFGSFVWVN 96 (706)
Q Consensus 19 g~~~~i~~~~~~~~~~~~~~SPDG~-~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l-t~~~~~~~~~~~~~~~wSp 96 (706)
|+..--+.+|.- ...++++|--. -++|.+. -..-.++.|..+.+.-++ .....+ ..+..=.|||
T Consensus 58 Gk~v~~~~lpaR--~Hgi~~~p~~~ravafARr---------PGtf~~vfD~~~~~~pv~~~s~~~R---HfyGHGvfs~ 123 (366)
T COG3490 58 GKIVFATALPAR--GHGIAFHPALPRAVAFARR---------PGTFAMVFDPNGAQEPVTLVSQEGR---HFYGHGVFSP 123 (366)
T ss_pred Cceeeeeecccc--cCCeecCCCCcceEEEEec---------CCceEEEECCCCCcCcEEEecccCc---eeecccccCC
Confidence 343333334443 77889999655 4556542 235567778777654333 222211 1133458999
Q ss_pred CCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCCCceecCCC--
Q 005240 97 NSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTP-- 174 (706)
Q Consensus 97 Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g~~~~lt~~-- 174 (706)
||++||-+-++... +.+-|=++|.+-..+++.+.
T Consensus 124 dG~~LYATEndfd~--------------------------------------------~rGViGvYd~r~~fqrvgE~~t 159 (366)
T COG3490 124 DGRLLYATENDFDP--------------------------------------------NRGVIGVYDAREGFQRVGEFST 159 (366)
T ss_pred CCcEEEeecCCCCC--------------------------------------------CCceEEEEecccccceeccccc
Confidence 99998866322110 22555566664333333322
Q ss_pred --ceEeeeeeCCCCcEEEEEee
Q 005240 175 --AVYTAVEPSPDQKYVLITSM 194 (706)
Q Consensus 175 --~~~~~~~~SpDG~~i~~~~~ 194 (706)
-....+.|.+||+.|+....
T Consensus 160 ~GiGpHev~lm~DGrtlvvanG 181 (366)
T COG3490 160 HGIGPHEVTLMADGRTLVVANG 181 (366)
T ss_pred CCcCcceeEEecCCcEEEEeCC
Confidence 35568899999999986554
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.51 Score=44.32 Aligned_cols=113 Identities=12% Similarity=0.117 Sum_probs=74.8
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~ 111 (706)
-+..+++.-||++..... ....|-++++..|...+-..+.+. .+.+.+-+.|...++...
T Consensus 19 aV~avryN~dGnY~ltcG----------sdrtvrLWNp~rg~liktYsghG~----EVlD~~~s~Dnskf~s~G------ 78 (307)
T KOG0316|consen 19 AVRAVRYNVDGNYCLTCG----------SDRTVRLWNPLRGALIKTYSGHGH----EVLDAALSSDNSKFASCG------ 78 (307)
T ss_pred ceEEEEEccCCCEEEEcC----------CCceEEeecccccceeeeecCCCc----eeeeccccccccccccCC------
Confidence 477889999999886643 235666778877776554433332 256667777776665321
Q ss_pred CCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CC-CceecCCC-ceEeeeeeCCCCcE
Q 005240 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTP-AVYTAVEPSPDQKY 188 (706)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g-~~~~lt~~-~~~~~~~~SpDG~~ 188 (706)
+...++++|+ +| ..+++-.. +.+..+.|..+..-
T Consensus 79 -------------------------------------------gDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSV 115 (307)
T KOG0316|consen 79 -------------------------------------------GDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSV 115 (307)
T ss_pred -------------------------------------------CCceEEEEEcccCeeeeecccccceeeEEEecCcceE
Confidence 1257888999 78 56666655 78889999877765
Q ss_pred EEEEeeccCcccccccccccceEEEEecCCCe
Q 005240 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKL 220 (706)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 220 (706)
|+-.+. ...+.+||..+..
T Consensus 116 v~Sgsf-------------D~s~r~wDCRS~s 134 (307)
T KOG0316|consen 116 VASGSF-------------DSSVRLWDCRSRS 134 (307)
T ss_pred EEeccc-------------cceeEEEEcccCC
Confidence 543333 2578889887543
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.97 E-value=1.6 Score=46.48 Aligned_cols=39 Identities=18% Similarity=0.212 Sum_probs=28.6
Q ss_pred ccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecC
Q 005240 300 RFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDR 344 (706)
Q Consensus 300 ~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~ 344 (706)
.+..+.|+.||..+.+.. ....+|++|+.+ .+|..+-+.
T Consensus 230 svTal~F~d~gL~~aVGt----s~G~v~iyDLRa--~~pl~~kdh 268 (703)
T KOG2321|consen 230 SVTALKFRDDGLHVAVGT----STGSVLIYDLRA--SKPLLVKDH 268 (703)
T ss_pred cceEEEecCCceeEEeec----cCCcEEEEEccc--CCceeeccc
Confidence 477888999999998865 345799999988 345555343
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.26 Score=47.69 Aligned_cols=152 Identities=9% Similarity=0.047 Sum_probs=89.3
Q ss_pred ccceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCC-eEEEEeeccccccccCCceeEEEEEcCCCceeecccCCC
Q 005240 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGK-RIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD 82 (706)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~-~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~ 82 (706)
--.|+|+|..+ -++--.-++++. +..-+|||=.. +-..+.. ....++-+.|++.|.......+..
T Consensus 123 DhtlKVWDtnT----lQ~a~~F~me~~--VYshamSp~a~sHcLiA~g--------tr~~~VrLCDi~SGs~sH~LsGHr 188 (397)
T KOG4283|consen 123 DHTLKVWDTNT----LQEAVDFKMEGK--VYSHAMSPMAMSHCLIAAG--------TRDVQVRLCDIASGSFSHTLSGHR 188 (397)
T ss_pred cceEEEeeccc----ceeeEEeecCce--eehhhcChhhhcceEEEEe--------cCCCcEEEEeccCCcceeeecccc
Confidence 34577888766 333333223433 77778998544 2222221 334788889999998766654433
Q ss_pred ccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEE
Q 005240 83 ICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLG 162 (706)
Q Consensus 83 ~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~ 162 (706)
. ++-.+.|||-.++++++...++... .+.. ....+-+-.+
T Consensus 189 ~----~vlaV~Wsp~~e~vLatgsaDg~ir----------------------lWDi--------------Rrasgcf~~l 228 (397)
T KOG4283|consen 189 D----GVLAVEWSPSSEWVLATGSADGAIR----------------------LWDI--------------RRASGCFRVL 228 (397)
T ss_pred C----ceEEEEeccCceeEEEecCCCceEE----------------------EEEe--------------ecccceeEEe
Confidence 2 3778999999999887743322110 0000 0011345555
Q ss_pred cc-CC-CceecC-CC---ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeE
Q 005240 163 SL-DG-TAKDFG-TP---AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR 222 (706)
Q Consensus 163 ~l-~g-~~~~lt-~~---~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 222 (706)
|. ++ .+..+. .. +.+..++|+.||.+++..... .++.+|+...+.-.
T Consensus 229 D~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd-------------~r~r~wn~~~G~nt 281 (397)
T KOG4283|consen 229 DQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTD-------------DRIRVWNMESGRNT 281 (397)
T ss_pred ecccCccCccccccccccceeeeeeecccchhhhhccCc-------------cceEEeecccCccc
Confidence 66 43 222222 22 577899999999999865543 47889998865433
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.96 E-value=1.1 Score=43.91 Aligned_cols=162 Identities=14% Similarity=0.156 Sum_probs=83.9
Q ss_pred cceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCcc
Q 005240 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~ 84 (706)
+.|.++++..++..-. +.... ....+-...||-||.+++.. ....++-++|+.+++..++..+...
T Consensus 50 ~tVR~wevq~~g~~~~-ka~~~--~~~PvL~v~WsddgskVf~g----------~~Dk~~k~wDL~S~Q~~~v~~Hd~p- 115 (347)
T KOG0647|consen 50 GTVRIWEVQNSGQLVP-KAQQS--HDGPVLDVCWSDDGSKVFSG----------GCDKQAKLWDLASGQVSQVAAHDAP- 115 (347)
T ss_pred CceEEEEEecCCcccc-hhhhc--cCCCeEEEEEccCCceEEee----------ccCCceEEEEccCCCeeeeeecccc-
Confidence 4567777766422222 11111 22247788999999887543 2335677779999999999766554
Q ss_pred ccccccceEEecCCc--EEEEEecCCCCCC-CCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEE
Q 005240 85 LNAVFGSFVWVNNST--LLIFTIPSSRRDP-PKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (706)
Q Consensus 85 ~~~~~~~~~wSpDg~--~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~ 161 (706)
++.+.|-+... .|+-.+-++.-.+ +.....+.. ......|.|..-..+++- -......+|-+
T Consensus 116 ----vkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~--------t~~LPeRvYa~Dv~~pm~---vVata~r~i~v 180 (347)
T KOG0647|consen 116 ----VKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVA--------TLQLPERVYAADVLYPMA---VVATAERHIAV 180 (347)
T ss_pred ----eeEEEEecCCCcceeEecccccceeecccCCCCeee--------eeeccceeeehhccCcee---EEEecCCcEEE
Confidence 88899976554 4443332211100 000000000 000111222211111110 00114467888
Q ss_pred EccC-C--CceecCCC--ceEeeeeeCCCCcEEEEEeec
Q 005240 162 GSLD-G--TAKDFGTP--AVYTAVEPSPDQKYVLITSMH 195 (706)
Q Consensus 162 ~~l~-g--~~~~lt~~--~~~~~~~~SpDG~~i~~~~~~ 195 (706)
++|. + +.+++..+ ...++++.-+|.+..+..+..
T Consensus 181 ynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiE 219 (347)
T KOG0647|consen 181 YNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIE 219 (347)
T ss_pred EEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeec
Confidence 8884 3 44445444 566788877877766666654
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.95 E-value=1.8 Score=42.32 Aligned_cols=123 Identities=18% Similarity=0.310 Sum_probs=73.6
Q ss_pred eeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCce--eecccCCCccccccccceEEecCCc
Q 005240 22 KEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA--KPLFESPDICLNAVFGSFVWVNNST 99 (706)
Q Consensus 22 ~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~--~~lt~~~~~~~~~~~~~~~wSpDg~ 99 (706)
-.|...|++ .++.++|||.-+.++-+.+= ++...+|.+... |.. +-.-...+ .+-...||.||.
T Consensus 20 ~ev~~pP~D-sIS~l~FSP~~~~~~~A~SW-------D~tVR~wevq~~-g~~~~ka~~~~~~-----PvL~v~Wsddgs 85 (347)
T KOG0647|consen 20 YEVPNPPED-SISALAFSPQADNLLAAGSW-------DGTVRIWEVQNS-GQLVPKAQQSHDG-----PVLDVCWSDDGS 85 (347)
T ss_pred eecCCCccc-chheeEeccccCceEEeccc-------CCceEEEEEecC-CcccchhhhccCC-----CeEEEEEccCCc
Confidence 334444444 68899999944444433321 556777776644 322 21222222 267889999998
Q ss_pred EEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCCceecCCC-ceE
Q 005240 100 LLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVY 177 (706)
Q Consensus 100 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~~~lt~~-~~~ 177 (706)
.++...- ..++-++|| +|++.++... +.+
T Consensus 86 kVf~g~~-------------------------------------------------Dk~~k~wDL~S~Q~~~v~~Hd~pv 116 (347)
T KOG0647|consen 86 KVFSGGC-------------------------------------------------DKQAKLWDLASGQVSQVAAHDAPV 116 (347)
T ss_pred eEEeecc-------------------------------------------------CCceEEEEccCCCeeeeeecccce
Confidence 7654421 156777899 7788888777 677
Q ss_pred eeeeeCCCCcE-EEEEeeccCcccccccccccceEEEEecCCC
Q 005240 178 TAVEPSPDQKY-VLITSMHRPYSYKVPCARFSQKVQVWTTDGK 219 (706)
Q Consensus 178 ~~~~~SpDG~~-i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 219 (706)
..+.|-+...+ ++.+.. + ...|..||....
T Consensus 117 kt~~wv~~~~~~cl~TGS-----W-------DKTlKfWD~R~~ 147 (347)
T KOG0647|consen 117 KTCHWVPGMNYQCLVTGS-----W-------DKTLKFWDTRSS 147 (347)
T ss_pred eEEEEecCCCcceeEecc-----c-------ccceeecccCCC
Confidence 88887766652 222221 1 247888887744
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.97 Score=44.51 Aligned_cols=102 Identities=12% Similarity=0.230 Sum_probs=63.8
Q ss_pred ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCe----eEEcccCCCCCCCCcccCccCCCCcceeee
Q 005240 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL----VRELCDLPPAEDIPVCYNSVREGMRSISWR 250 (706)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~l~~~~~~~~~p~~~~~~~~g~~~~~~s 250 (706)
..+..-+|++|+..|++.... .++.+|...+.. ...|..++.. +..+.|+
T Consensus 11 ~pitchAwn~drt~iAv~~~~-------------~evhiy~~~~~~~w~~~htls~Hd~~-------------vtgvdWa 64 (361)
T KOG1523|consen 11 EPITCHAWNSDRTQIAVSPNN-------------HEVHIYSMLGADLWEPAHTLSEHDKI-------------VTGVDWA 64 (361)
T ss_pred CceeeeeecCCCceEEeccCC-------------ceEEEEEecCCCCceeceehhhhCcc-------------eeEEeec
Confidence 356788999999999987654 377888777655 2223333221 2257999
Q ss_pred cCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCce---EEeecccccccceecCCCceEEEEe
Q 005240 251 ADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPE---ILHKLDLRFRSVSWCDDSLALVNET 317 (706)
Q Consensus 251 pdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~---~l~~~~~~~~~~~wspDg~~l~~~~ 317 (706)
|..+. |+-... + ++ -|++... ++++-+ .|...++....+.|+|....|+..+
T Consensus 65 p~snr-Ivtcs~-d----rn-------ayVw~~~--~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgS 119 (361)
T KOG1523|consen 65 PKSNR-IVTCSH-D----RN-------AYVWTQP--SGGTWKPTLVLLRINRAATCVKWSPKENKFAVGS 119 (361)
T ss_pred CCCCc-eeEccC-C----CC-------ccccccC--CCCeeccceeEEEeccceeeEeecCcCceEEecc
Confidence 99987 664421 1 11 2333321 333322 3456788888999999988887754
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.89 E-value=4.1 Score=45.92 Aligned_cols=209 Identities=11% Similarity=0.181 Sum_probs=105.3
Q ss_pred EEEEcc-CC-CceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCC--
Q 005240 159 LVLGSL-DG-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDI-- 233 (706)
Q Consensus 159 l~~~~l-~g-~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~-- 233 (706)
|-+++- ++ -...||.. .++.+..|.|....|+-.+-+ +.|.+||+.|-..+....+...+..
T Consensus 117 IrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLD-------------QTVRVWDisGLRkk~~~pg~~e~~~~~ 183 (1202)
T KOG0292|consen 117 IRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLD-------------QTVRVWDISGLRKKNKAPGSLEDQMRG 183 (1202)
T ss_pred EEEEeccCCceEEEEecCceEEEeeccCCccceEEEeccc-------------ceEEEEeecchhccCCCCCCchhhhhc
Confidence 333444 33 44556655 688999999988888755544 4799999986544444333111110
Q ss_pred --------C-------cccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCc--eEEee
Q 005240 234 --------P-------VCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP--EILHK 296 (706)
Q Consensus 234 --------p-------~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~--~~l~~ 296 (706)
+ ........|+..++|.|.-. |+ + ++++.+.. .+|+++. +..- .....
T Consensus 184 ~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp--li-V---SG~DDRqV-----KlWrmne----tKaWEvDtcrg 248 (1202)
T KOG0292|consen 184 QQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP--LI-V---SGADDRQV-----KLWRMNE----TKAWEVDTCRG 248 (1202)
T ss_pred cccchhhcCCcCeeeeeeecccccccceEEecCCcc--eE-E---ecCCccee-----eEEEecc----ccceeehhhhc
Confidence 0 00111122344555666433 22 2 23333321 3566553 2221 22234
Q ss_pred cccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeec---CcccccccCCCCCceEeccCCCEEEEeeec
Q 005240 297 LDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFD---RVFENVYSDPGSPMMTRTSTGTNVIAKIKK 373 (706)
Q Consensus 297 ~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~ 373 (706)
+-..++.+-|.|....|+..+ ++...++|-++-.+ ..+.+. ..+.-+...|...-++.-.|+-.++|...+
T Consensus 249 H~nnVssvlfhp~q~lIlSns--EDksirVwDm~kRt----~v~tfrrendRFW~laahP~lNLfAAgHDsGm~VFkleR 322 (1202)
T KOG0292|consen 249 HYNNVSSVLFHPHQDLILSNS--EDKSIRVWDMTKRT----SVQTFRRENDRFWILAAHPELNLFAAGHDSGMIVFKLER 322 (1202)
T ss_pred ccCCcceEEecCccceeEecC--CCccEEEEeccccc----ceeeeeccCCeEEEEEecCCcceeeeecCCceEEEEEcc
Confidence 556778888999766666543 33455666555443 233331 112222234444445556777777777654
Q ss_pred cC-----CcceEEEEecCCCCCCCCCCceeeeecCCCceeee
Q 005240 374 EN-----DEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERI 410 (706)
Q Consensus 374 ~~-----~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l 410 (706)
.. .++...|++ ...|+.+|+.+.+-..+
T Consensus 323 Erpa~~v~~n~LfYvk---------d~~i~~~d~~t~~d~~v 355 (1202)
T KOG0292|consen 323 ERPAYAVNGNGLFYVK---------DRFIRSYDLRTQKDTAV 355 (1202)
T ss_pred cCceEEEcCCEEEEEc---------cceEEeeecccccccee
Confidence 31 223334433 12466677766443333
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.88 E-value=1 Score=44.19 Aligned_cols=140 Identities=17% Similarity=0.199 Sum_probs=70.5
Q ss_pred ceEEEEcc-CCCceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCee-EEcccCCCCCCC
Q 005240 157 AQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDI 233 (706)
Q Consensus 157 ~~l~~~~l-~g~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~l~~~~~~~~~ 233 (706)
..|-+++| .|+...+..- .....+.|+|.|.+.++...+ .|-+|-++...+ +.+....
T Consensus 149 ~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~--------------~i~i~q~d~A~v~~~i~~~~----- 209 (362)
T KOG0294|consen 149 QVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRN--------------KIDIYQLDNASVFREIENPK----- 209 (362)
T ss_pred ceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEecc--------------EEEEEecccHhHhhhhhccc-----
Confidence 35666787 7743333222 445569999999988766543 466666664322 1111110
Q ss_pred CcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeeccccccccee--cCCCc
Q 005240 234 PVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSW--CDDSL 311 (706)
Q Consensus 234 p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~w--spDg~ 311 (706)
....+.|- ++.. |+.- ++. ..+-.+|-+ +...+..+..+..++-++.. .|++.
T Consensus 210 ---------r~l~~~~l-~~~~-L~vG-----~d~-------~~i~~~D~d--s~~~~~~~~AH~~RVK~i~~~~~~~~~ 264 (362)
T KOG0294|consen 210 ---------RILCATFL-DGSE-LLVG-----GDN-------EWISLKDTD--SDTPLTEFLAHENRVKDIASYTNPEHE 264 (362)
T ss_pred ---------cceeeeec-CCce-EEEe-----cCC-------ceEEEeccC--CCccceeeecchhheeeeEEEecCCce
Confidence 00011222 1222 3211 111 124455542 12233444555666666553 35677
Q ss_pred eEEEEeeccccceEEEEEcCCCCCCCceeeec
Q 005240 312 ALVNETWYKTSQTRTWLVCPGSKDVAPRVLFD 343 (706)
Q Consensus 312 ~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~ 343 (706)
+|+..+ .++...+|.++.++.+ .|.+|.+
T Consensus 265 ~lvTaS--SDG~I~vWd~~~~~k~-~~~~l~e 293 (362)
T KOG0294|consen 265 YLVTAS--SDGFIKVWDIDMETKK-RPTLLAE 293 (362)
T ss_pred EEEEec--cCceEEEEEccccccC-CcceeEE
Confidence 776654 3367888888888753 4555533
|
|
| >PF00151 Lipase: Lipase; InterPro: IPR013818 Triglyceride lipases (3 | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.019 Score=59.02 Aligned_cols=55 Identities=13% Similarity=0.005 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCC--ceeEEEeccCC
Q 005240 582 LVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH--LFCCGIARSGS 636 (706)
Q Consensus 582 ~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~--~~~a~v~~~~~ 636 (706)
+-.-+...+.+|.+..-+++++|-|+|||+||++|-.+.-+... ++....+..|.
T Consensus 130 vg~~la~~l~~L~~~~g~~~~~ihlIGhSLGAHvaG~aG~~~~~~~ki~rItgLDPA 186 (331)
T PF00151_consen 130 VGRQLAKFLSFLINNFGVPPENIHLIGHSLGAHVAGFAGKYLKGGGKIGRITGLDPA 186 (331)
T ss_dssp HHHHHHHHHHHHHHHH---GGGEEEEEETCHHHHHHHHHHHTTT---SSEEEEES-B
T ss_pred HHHHHHHHHHHHHhhcCCChhHEEEEeeccchhhhhhhhhhccCcceeeEEEecCcc
Confidence 34455566777775545789999999999999999999987755 67766666654
|
1.1.3 from EC) are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. At least three tissue-specific isozymes exist in higher vertebrates, pancreatic, hepatic and gastric/lingual. These lipases are closely related to each other and to lipoprotein lipase (3.1.1.34 from EC), which hydrolyses triglycerides of chylomicrons and very low density lipoproteins (VLDL) []. The most conserved region in all these proteins is centred around a serine residue which has been shown [] to participate, with an histidine and an aspartic acid residue, in a charge relay system. Such a region is also present in lipases of prokaryotic origin and in lecithin-cholesterol acyltransferase (2.3.1.43 from EC) (LCAT) [], which catalyzes fatty acid transfer between phosphatidylcholine and cholesterol.; PDB: 1LPB_B 1LPA_B 1N8S_A 1GPL_A 1W52_X 2PVS_B 2OXE_B 1BU8_A 2PPL_A 1ETH_A .... |
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.97 Score=46.62 Aligned_cols=228 Identities=16% Similarity=0.167 Sum_probs=123.9
Q ss_pred ceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccc
Q 005240 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (706)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 85 (706)
.|-++|+.+. ...+.+-+...+....++...|||-..--.|+++ ....|-..|++++.-..+..... .
T Consensus 211 ~VG~Wn~~~~-~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssS---------yDGtiR~~D~~~~i~e~v~s~~~--d 278 (498)
T KOG4328|consen 211 QVGLWNFGTQ-EKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSS---------YDGTIRLQDFEGNISEEVLSLDT--D 278 (498)
T ss_pred cEEEEecCCC-CCccCceEEeccCCccccceEecCCChhheeeec---------cCceeeeeeecchhhHHHhhcCc--c
Confidence 4667777321 1123344444566668999999996665556653 34678888998877665543321 1
Q ss_pred cccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-
Q 005240 86 NAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL- 164 (706)
Q Consensus 86 ~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l- 164 (706)
+..+.++.++.+...++|... .+.+.++|+
T Consensus 279 ~~~fs~~d~~~e~~~vl~~~~-------------------------------------------------~G~f~~iD~R 309 (498)
T KOG4328|consen 279 NIWFSSLDFSAESRSVLFGDN-------------------------------------------------VGNFNVIDLR 309 (498)
T ss_pred ceeeeeccccCCCccEEEeec-------------------------------------------------ccceEEEEee
Confidence 223556777777766666531 134445555
Q ss_pred -CC-CceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecC--CCeeE-EcccCCCCCCCCcccC
Q 005240 165 -DG-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD--GKLVR-ELCDLPPAEDIPVCYN 238 (706)
Q Consensus 165 -~g-~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~-~l~~~~~~~~~p~~~~ 238 (706)
+| +...+.-. .-+..+++.|--.+++.++..+ ..+.+||+- .++.. .|...+.
T Consensus 310 ~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D------------~T~kIWD~R~l~~K~sp~lst~~H--------- 368 (498)
T KOG4328|consen 310 TDGSEYENLRLHKKKITSVALNPVCPWFLATASLD------------QTAKIWDLRQLRGKASPFLSTLPH--------- 368 (498)
T ss_pred cCCccchhhhhhhcccceeecCCCCchheeecccC------------cceeeeehhhhcCCCCcceecccc---------
Confidence 44 33333333 4677899999988887776553 357788875 22211 1111111
Q ss_pred ccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCC-CCc-eEEeec--c-c--ccccceecCCCc
Q 005240 239 SVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEG-EKP-EILHKL--D-L--RFRSVSWCDDSL 311 (706)
Q Consensus 239 ~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~~-~~l~~~--~-~--~~~~~~wspDg~ 311 (706)
...+....|||++.. |+... .+ . .|.++|..-+.. -++ ..+... . . ......|.||-.
T Consensus 369 --rrsV~sAyFSPs~gt-l~TT~-~D---~--------~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~ 433 (498)
T KOG4328|consen 369 --RRSVNSAYFSPSGGT-LLTTC-QD---N--------EIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYN 433 (498)
T ss_pred --cceeeeeEEcCCCCc-eEeec-cC---C--------ceEEeecccccccCCccceeeccCcccccccchhheeCCCcc
Confidence 012346789999987 65432 11 1 244544300000 011 122211 1 1 123567999988
Q ss_pred eEEEEeeccccceEEEEEcCCCC
Q 005240 312 ALVNETWYKTSQTRTWLVCPGSK 334 (706)
Q Consensus 312 ~l~~~~~~~~~~~~l~~~d~~~~ 334 (706)
.|+... .. ..|=++|..++
T Consensus 434 li~vg~-~~---r~IDv~~~~~~ 452 (498)
T KOG4328|consen 434 LIVVGR-YP---RPIDVFDGNGG 452 (498)
T ss_pred EEEEec-cC---cceeEEcCCCC
Confidence 777653 22 23667776663
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.97 Score=48.21 Aligned_cols=114 Identities=12% Similarity=0.143 Sum_probs=61.7
Q ss_pred ceEEEEccCCCceecCC--C-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCe-eEEcccCCCCCC
Q 005240 157 AQLVLGSLDGTAKDFGT--P-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL-VRELCDLPPAED 232 (706)
Q Consensus 157 ~~l~~~~l~g~~~~lt~--~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~~~~ 232 (706)
..+++.+|.....+... . +.+....|.|---++++.+. ..|.+||+.... +++|..+.
T Consensus 546 ~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq--------------~~vRiYdL~kqelvKkL~tg~---- 607 (733)
T KOG0650|consen 546 KSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ--------------RSVRIYDLSKQELVKKLLTGS---- 607 (733)
T ss_pred ceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec--------------cceEEEehhHHHHHHHHhcCC----
Confidence 56777777442222222 1 67788899999888865543 368899987432 22332221
Q ss_pred CCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCc
Q 005240 233 IPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSL 311 (706)
Q Consensus 233 ~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~ 311 (706)
..+..++.+|.|.. |+.... ...++.+|+ .+.+.-.+.|-.+...+.++++++---
T Consensus 608 ---------kwiS~msihp~GDn-li~gs~------------d~k~~WfDl-dlsskPyk~lr~H~~avr~Va~H~ryP 663 (733)
T KOG0650|consen 608 ---------KWISSMSIHPNGDN-LILGSY------------DKKMCWFDL-DLSSKPYKTLRLHEKAVRSVAFHKRYP 663 (733)
T ss_pred ---------eeeeeeeecCCCCe-EEEecC------------CCeeEEEEc-ccCcchhHHhhhhhhhhhhhhhccccc
Confidence 11235677887776 443311 113555566 223333344544555566666655433
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.04 Score=54.62 Aligned_cols=155 Identities=13% Similarity=0.183 Sum_probs=93.0
Q ss_pred eeEeecCCCCCCCCeeeeecCCCCC-cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCcee-ecccCCCcc
Q 005240 7 IGIHRLLPDDSLGPEKEVHGYPDGA-KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAK-PLFESPDIC 84 (706)
Q Consensus 7 ~~~~~~~~~~~~g~~~~i~~~~~~~-~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~-~lt~~~~~~ 84 (706)
|.|+|... ..+++++.-+. .+...+++|--..|.-+. .....|.++|+.++.+. .++-...
T Consensus 169 i~IWD~~R------~~Pv~smswG~Dti~svkfNpvETsILas~---------~sDrsIvLyD~R~~~Pl~KVi~~mR-- 231 (433)
T KOG0268|consen 169 IDIWDEQR------DNPVSSMSWGADSISSVKFNPVETSILASC---------ASDRSIVLYDLRQASPLKKVILTMR-- 231 (433)
T ss_pred eeeccccc------CCccceeecCCCceeEEecCCCcchheeee---------ccCCceEEEecccCCccceeeeecc--
Confidence 55566533 33444444443 567889999888776654 23468999998876543 3332221
Q ss_pred ccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc
Q 005240 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (706)
Q Consensus 85 ~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l 164 (706)
...+.|+|.+ +.|++.. ....||.+|.
T Consensus 232 ----TN~IswnPea--fnF~~a~-----------------------------------------------ED~nlY~~Dm 258 (433)
T KOG0268|consen 232 ----TNTICWNPEA--FNFVAAN-----------------------------------------------EDHNLYTYDM 258 (433)
T ss_pred ----ccceecCccc--cceeecc-----------------------------------------------ccccceehhh
Confidence 3578999943 4444311 1156888887
Q ss_pred CC--CceecCCC--ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCcc
Q 005240 165 DG--TAKDFGTP--AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240 (706)
Q Consensus 165 ~g--~~~~lt~~--~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~ 240 (706)
-. .+..+-.+ ..+..++|||.|+.++-.+.+ ..|.++.+..+.-|.+....-.
T Consensus 259 R~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyD-------------ksIRIf~~~~~~SRdiYhtkRM---------- 315 (433)
T KOG0268|consen 259 RNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYD-------------KSIRIFPVNHGHSRDIYHTKRM---------- 315 (433)
T ss_pred hhhcccchhhcccceeEEEeccCCCcchhcccccc-------------ceEEEeecCCCcchhhhhHhhh----------
Confidence 43 33333333 578899999999998754443 4788888886654443322110
Q ss_pred CCCCcceeeecCCCc
Q 005240 241 REGMRSISWRADKPS 255 (706)
Q Consensus 241 ~~g~~~~~~spdg~~ 255 (706)
..+..+.||.|.+.
T Consensus 316 -q~V~~Vk~S~Dsky 329 (433)
T KOG0268|consen 316 -QHVFCVKYSMDSKY 329 (433)
T ss_pred -heeeEEEEeccccE
Confidence 11336789999885
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.36 Score=47.37 Aligned_cols=61 Identities=18% Similarity=0.309 Sum_probs=39.9
Q ss_pred ccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCce-eecccCCCccccccccceEEecCCcEEEEEe
Q 005240 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-KPLFESPDICLNAVFGSFVWVNNSTLLIFTI 105 (706)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~-~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~ 105 (706)
+..-+|++|+..||...+ ..+|.++...+... +++-....+ ...+..+.|+|.+.+|+..+
T Consensus 13 itchAwn~drt~iAv~~~----------~~evhiy~~~~~~~w~~~htls~H--d~~vtgvdWap~snrIvtcs 74 (361)
T KOG1523|consen 13 ITCHAWNSDRTQIAVSPN----------NHEVHIYSMLGADLWEPAHTLSEH--DKIVTGVDWAPKSNRIVTCS 74 (361)
T ss_pred eeeeeecCCCceEEeccC----------CceEEEEEecCCCCceeceehhhh--CcceeEEeecCCCCceeEcc
Confidence 667799999999999754 35677776666662 222111111 12266789999998877653
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.72 E-value=2.5 Score=42.33 Aligned_cols=142 Identities=15% Similarity=0.103 Sum_probs=87.3
Q ss_pred cceeEeecCCCCCCCCeeeeecCCCC-CcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCc
Q 005240 5 TGIGIHRLLPDDSLGPEKEVHGYPDG-AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~i~~~~~~-~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~ 83 (706)
..|+|.||++ |+.+.- ++.. ..+..+++|+---+| |.. ....++-.+|++..+..+-.++.-
T Consensus 173 rtikIwDlat----g~Lklt--ltGhi~~vr~vavS~rHpYl-Fs~---------gedk~VKCwDLe~nkvIR~YhGHl- 235 (460)
T KOG0285|consen 173 RTIKIWDLAT----GQLKLT--LTGHIETVRGVAVSKRHPYL-FSA---------GEDKQVKCWDLEYNKVIRHYHGHL- 235 (460)
T ss_pred ceeEEEEccc----CeEEEe--ecchhheeeeeeecccCceE-EEe---------cCCCeeEEEechhhhhHHHhcccc-
Confidence 4689999988 766542 3422 368899999988888 544 334688888998887555433221
Q ss_pred cccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEc
Q 005240 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (706)
Q Consensus 84 ~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~ 163 (706)
. ++..+...|--+.|+..+.+ ..+-++|
T Consensus 236 --S-~V~~L~lhPTldvl~t~grD-------------------------------------------------st~RvWD 263 (460)
T KOG0285|consen 236 --S-GVYCLDLHPTLDVLVTGGRD-------------------------------------------------STIRVWD 263 (460)
T ss_pred --c-eeEEEeccccceeEEecCCc-------------------------------------------------ceEEEee
Confidence 1 25566777777766644211 3444456
Q ss_pred c-CC-CceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecC-CCeeEEcccCC
Q 005240 164 L-DG-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD-GKLVRELCDLP 228 (706)
Q Consensus 164 l-~g-~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~l~~~~ 228 (706)
+ +. .+..|... ..+..+..-|-.-+|+-.+.+ ..|.+||+- |+....|+...
T Consensus 264 iRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D-------------~tvrlWDl~agkt~~tlt~hk 319 (460)
T KOG0285|consen 264 IRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHD-------------STVRLWDLRAGKTMITLTHHK 319 (460)
T ss_pred ecccceEEEecCCCCcceeEEeecCCCceEEecCC-------------ceEEEeeeccCceeEeeeccc
Confidence 6 32 44445444 556666666644456544443 479999997 55566666654
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.18 Score=52.22 Aligned_cols=137 Identities=11% Similarity=0.083 Sum_probs=88.9
Q ss_pred ceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccc
Q 005240 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (706)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 85 (706)
+|-|+.+.+ +-+++.++ .+.+..+.-+++||-.+.+.-+.. ....+.+||+.+..+.-=. ...+
T Consensus 144 diiih~~~t---~~~tt~f~-~~sgqsvRll~ys~skr~lL~~as---------d~G~VtlwDv~g~sp~~~~-~~~H-- 207 (673)
T KOG4378|consen 144 DIIIHGTKT---KQKTTTFT-IDSGQSVRLLRYSPSKRFLLSIAS---------DKGAVTLWDVQGMSPIFHA-SEAH-- 207 (673)
T ss_pred cEEEEeccc---Ccccccee-cCCCCeEEEeecccccceeeEeec---------cCCeEEEEeccCCCcccch-hhhc--
Confidence 467777766 13444444 556667788999999999987663 3355666677665432111 1111
Q ss_pred cccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccC
Q 005240 86 NAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD 165 (706)
Q Consensus 86 ~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~ 165 (706)
.+....+.+||-.+.|+...- ....|+++|..
T Consensus 208 sAP~~gicfspsne~l~vsVG------------------------------------------------~Dkki~~yD~~ 239 (673)
T KOG4378|consen 208 SAPCRGICFSPSNEALLVSVG------------------------------------------------YDKKINIYDIR 239 (673)
T ss_pred cCCcCcceecCCccceEEEec------------------------------------------------ccceEEEeecc
Confidence 112467899998887666531 11468888874
Q ss_pred C--CceecCCCceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCC
Q 005240 166 G--TAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK 219 (706)
Q Consensus 166 g--~~~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 219 (706)
. ....|+.......++|+|+|.+|+....++ +|+.||+.+.
T Consensus 240 s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G-------------~~i~YD~R~~ 282 (673)
T KOG4378|consen 240 SQASTDRLTYSHPLSTVAFSECGTYLCAGNSKG-------------ELIAYDMRST 282 (673)
T ss_pred cccccceeeecCCcceeeecCCceEEEeecCCc-------------eEEEEecccC
Confidence 3 445666556778999999999998765543 7888998754
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.65 Score=53.73 Aligned_cols=60 Identities=18% Similarity=0.194 Sum_probs=41.6
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEec
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIP 106 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~ 106 (706)
.+.++.+--|+..|.++ .....|.++|+++....-+..... ++....||||++++++.+.
T Consensus 70 ~i~s~~fl~d~~~i~v~----------~~~G~iilvd~et~~~eivg~vd~-----GI~aaswS~Dee~l~liT~ 129 (1265)
T KOG1920|consen 70 EIVSVQFLADTNSICVI----------TALGDIILVDPETLELEIVGNVDN-----GISAASWSPDEELLALITG 129 (1265)
T ss_pred ceEEEEEecccceEEEE----------ecCCcEEEEcccccceeeeeeccC-----ceEEEeecCCCcEEEEEeC
Confidence 34455666666666554 334677788888877776654333 4888999999999998753
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.71 Score=47.56 Aligned_cols=60 Identities=23% Similarity=0.199 Sum_probs=38.6
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEe
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTI 105 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~ 105 (706)
.+...+.||||++||+. .....|.+++.++.++.+.+.+... .+.++++--.-..||..+
T Consensus 204 eil~~avS~Dgkylatg----------g~d~~v~Iw~~~t~ehv~~~~ghr~----~V~~L~fr~gt~~lys~s 263 (479)
T KOG0299|consen 204 EILTLAVSSDGKYLATG----------GRDRHVQIWDCDTLEHVKVFKGHRG----AVSSLAFRKGTSELYSAS 263 (479)
T ss_pred eeEEEEEcCCCcEEEec----------CCCceEEEecCcccchhhccccccc----ceeeeeeecCccceeeee
Confidence 35568899999999994 2234556889999998887533322 255666654334455443
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.45 Score=49.28 Aligned_cols=153 Identities=15% Similarity=0.126 Sum_probs=94.2
Q ss_pred eeEeecCCCCCCCCeeeeecCCC-CCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecc-cCCCcc
Q 005240 7 IGIHRLLPDDSLGPEKEVHGYPD-GAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLF-ESPDIC 84 (706)
Q Consensus 7 ~~~~~~~~~~~~g~~~~i~~~~~-~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt-~~~~~~ 84 (706)
+.+.++++ +.. |+. +.. ...+....|||-..+|+++... + ..|-++|+.....+.+. +++.
T Consensus 135 ~k~~d~s~----a~v-~~~-l~~htDYVR~g~~~~~~~hivvtGsY-------D--g~vrl~DtR~~~~~v~elnhg~-- 197 (487)
T KOG0310|consen 135 VKYWDLST----AYV-QAE-LSGHTDYVRCGDISPANDHIVVTGSY-------D--GKVRLWDTRSLTSRVVELNHGC-- 197 (487)
T ss_pred EEEEEcCC----cEE-EEE-ecCCcceeEeeccccCCCeEEEecCC-------C--ceEEEEEeccCCceeEEecCCC--
Confidence 45666755 443 433 332 2368889999999999887643 3 44555555444333333 2222
Q ss_pred ccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc
Q 005240 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (706)
Q Consensus 85 ~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l 164 (706)
.+.++.+-|.|..|+.. +...+-+||+
T Consensus 198 ---pVe~vl~lpsgs~iasA--------------------------------------------------gGn~vkVWDl 224 (487)
T KOG0310|consen 198 ---PVESVLALPSGSLIASA--------------------------------------------------GGNSVKVWDL 224 (487)
T ss_pred ---ceeeEEEcCCCCEEEEc--------------------------------------------------CCCeEEEEEe
Confidence 27788888999887754 1257888899
Q ss_pred C-C--CceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCcc
Q 005240 165 D-G--TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240 (706)
Q Consensus 165 ~-g--~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~ 240 (706)
. | .+....+. -.++++++..|+++|+-.+-++ .+.+|+...=++..=...+
T Consensus 225 ~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~-------------~VKVfd~t~~Kvv~s~~~~------------ 279 (487)
T KOG0310|consen 225 TTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDR-------------HVKVFDTTNYKVVHSWKYP------------ 279 (487)
T ss_pred cCCceehhhhhcccceEEEEEeecCCceEeeccccc-------------ceEEEEccceEEEEeeecc------------
Confidence 4 5 23333334 6789999999999997665543 6777875543332211221
Q ss_pred CCCCcceeeecCCCc
Q 005240 241 REGMRSISWRADKPS 255 (706)
Q Consensus 241 ~~g~~~~~~spdg~~ 255 (706)
..+-+++.|||++.
T Consensus 280 -~pvLsiavs~dd~t 293 (487)
T KOG0310|consen 280 -GPVLSIAVSPDDQT 293 (487)
T ss_pred -cceeeEEecCCCce
Confidence 12447788888775
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.64 E-value=2.5 Score=41.52 Aligned_cols=120 Identities=19% Similarity=0.238 Sum_probs=77.0
Q ss_pred CeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCc
Q 005240 20 PEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNST 99 (706)
Q Consensus 20 ~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~ 99 (706)
...++...|+. .++.++|||.+..|+.++= + ..|.+++....+.++....... +-...|.++.+
T Consensus 4 ~~~~l~npP~d-~IS~v~f~~~~~~LLvssW--------D--gslrlYdv~~~~l~~~~~~~~p-----lL~c~F~d~~~ 67 (323)
T KOG1036|consen 4 NEFELENPPED-GISSVKFSPSSSDLLVSSW--------D--GSLRLYDVPANSLKLKFKHGAP-----LLDCAFADEST 67 (323)
T ss_pred cccccCCCChh-ceeeEEEcCcCCcEEEEec--------c--CcEEEEeccchhhhhheecCCc-----eeeeeccCCce
Confidence 34445544444 5889999999999887651 2 4666677777777666554443 55677777655
Q ss_pred EEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCCceecCCC-ceE
Q 005240 100 LLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVY 177 (706)
Q Consensus 100 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~~~lt~~-~~~ 177 (706)
+++.. -.++|-++|+ +|+..++..+ ..+
T Consensus 68 -~~~G~-------------------------------------------------~dg~vr~~Dln~~~~~~igth~~~i 97 (323)
T KOG1036|consen 68 -IVTGG-------------------------------------------------LDGQVRRYDLNTGNEDQIGTHDEGI 97 (323)
T ss_pred -EEEec-------------------------------------------------cCceEEEEEecCCcceeeccCCCce
Confidence 34331 1268889999 5566666655 778
Q ss_pred eeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCC
Q 005240 178 TAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG 218 (706)
Q Consensus 178 ~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 218 (706)
..+..++--..|+-.+= ...|.+||.-.
T Consensus 98 ~ci~~~~~~~~vIsgsW-------------D~~ik~wD~R~ 125 (323)
T KOG1036|consen 98 RCIEYSYEVGCVISGSW-------------DKTIKFWDPRN 125 (323)
T ss_pred EEEEeeccCCeEEEccc-------------CccEEEEeccc
Confidence 88888875444442221 24788898764
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.61 E-value=1.7 Score=42.65 Aligned_cols=58 Identities=7% Similarity=0.116 Sum_probs=39.8
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEE
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLI 102 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~ 102 (706)
.++..+|+||.+.|..+. +...+|.-++.+|.-.+.+.-..- .. ...+.|.-+|++.+
T Consensus 87 nvS~LTynp~~rtLFav~---------n~p~~iVElt~~GdlirtiPL~g~---~D-pE~Ieyig~n~fvi 144 (316)
T COG3204 87 NVSSLTYNPDTRTLFAVT---------NKPAAIVELTKEGDLIRTIPLTGF---SD-PETIEYIGGNQFVI 144 (316)
T ss_pred cccceeeCCCcceEEEec---------CCCceEEEEecCCceEEEeccccc---CC-hhHeEEecCCEEEE
Confidence 389999999999995543 455788888887776666642111 11 56778888887543
|
|
| >COG3150 Predicted esterase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.13 Score=45.59 Aligned_cols=27 Identities=15% Similarity=0.094 Sum_probs=22.6
Q ss_pred cEEEEEechHHHHHHHHHHhCCCceeEEE
Q 005240 603 RIAVGGHSYGAFMTAHLLAHAPHLFCCGI 631 (706)
Q Consensus 603 ~i~i~G~S~GG~~a~~~~~~~p~~~~a~v 631 (706)
..+|.|-|.|||.|.|++.+. -+++++
T Consensus 60 ~p~ivGssLGGY~At~l~~~~--Girav~ 86 (191)
T COG3150 60 SPLIVGSSLGGYYATWLGFLC--GIRAVV 86 (191)
T ss_pred CceEEeecchHHHHHHHHHHh--CChhhh
Confidence 399999999999999999998 345544
|
|
| >PF12048 DUF3530: Protein of unknown function (DUF3530); InterPro: IPR022529 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=95.58 E-value=1.4 Score=44.93 Aligned_cols=111 Identities=20% Similarity=0.168 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCC-ceeEEEeccCCCCCCC-------------CC-
Q 005240 579 VEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH-LFCCGIARSGSYNKTL-------------TP- 643 (706)
Q Consensus 579 ~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~-~~~a~v~~~~~~d~~~-------------~~- 643 (706)
...++.-+.+++.++.+++. .+|+|+|+..|+++++.++...+. .+.+.|.+++-..... .|
T Consensus 173 ~~~~~ari~Aa~~~~~~~~~---~~ivlIg~G~gA~~~~~~la~~~~~~~daLV~I~a~~p~~~~n~~l~~~la~l~iPv 249 (310)
T PF12048_consen 173 EERLFARIEAAIAFAQQQGG---KNIVLIGHGTGAGWAARYLAEKPPPMPDALVLINAYWPQPDRNPALAEQLAQLKIPV 249 (310)
T ss_pred HHHHHHHHHHHHHHHHhcCC---ceEEEEEeChhHHHHHHHHhcCCCcccCeEEEEeCCCCcchhhhhHHHHhhccCCCE
Confidence 34567778888888888753 569999999999999999988854 4788888886432111 01
Q ss_pred ------cc---chHHHHHHHHHhC--CCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHH
Q 005240 644 ------FG---FQAERFFDALKGH--GALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKY 694 (706)
Q Consensus 644 ------~~---~~~~~~~~~l~~~--~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~~~~ 694 (706)
.. .+.....+.+.++ +..++-+..++..|.... ....+.++|..|++++
T Consensus 250 LDi~~~~~~~~~~~a~~R~~~a~r~~~~~YrQ~~L~~~~~~~~~--~~~~l~~rIrGWL~~~ 309 (310)
T PF12048_consen 250 LDIYSADNPASQQTAKQRKQAAKRNKKPDYRQIQLPGLPDNPSG--WQEQLLRRIRGWLKRH 309 (310)
T ss_pred EEEecCCChHHHHHHHHHHHHHHhccCCCceeEecCCCCCChhh--HHHHHHHHHHHHHHhh
Confidence 00 0001222222222 234666677777775432 2233899999999885
|
This protein is found in bacteria. Proteins in this family are typically between 272 to 336 amino acids in length. These proteins are distantly related to alpa/beta hydrolases so they may act as enzymes. |
| >PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.13 Score=47.46 Aligned_cols=49 Identities=12% Similarity=0.102 Sum_probs=35.7
Q ss_pred HHHHHHHc-CCCCCCcEEEEEechHHHHHHHHH-HhCCCceeEEEeccCCCC
Q 005240 589 AVEEVVRR-GVADPSRIAVGGHSYGAFMTAHLL-AHAPHLFCCGIARSGSYN 638 (706)
Q Consensus 589 ~~~~l~~~-~~id~~~i~i~G~S~GG~~a~~~~-~~~p~~~~a~v~~~~~~d 638 (706)
.++.|.+. ..+| ..+.+.|||.|+.+++..+ .+...+++++++++|...
T Consensus 42 W~~~l~~~i~~~~-~~~ilVaHSLGc~~~l~~l~~~~~~~v~g~lLVAp~~~ 92 (171)
T PF06821_consen 42 WVQALDQAIDAID-EPTILVAHSLGCLTALRWLAEQSQKKVAGALLVAPFDP 92 (171)
T ss_dssp HHHHHHHCCHC-T-TTEEEEEETHHHHHHHHHHHHTCCSSEEEEEEES--SC
T ss_pred HHHHHHHHHhhcC-CCeEEEEeCHHHHHHHHHHhhcccccccEEEEEcCCCc
Confidence 34445443 2244 4699999999999999999 777789999999999754
|
The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A. |
| >PRK13613 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=95.50 E-value=1.4 Score=49.07 Aligned_cols=68 Identities=19% Similarity=0.128 Sum_probs=41.6
Q ss_pred CCeeeeecCCC-C-CcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCC-c----eeecccCCCccccccccc
Q 005240 19 GPEKEVHGYPD-G-AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETG-E----AKPLFESPDICLNAVFGS 91 (706)
Q Consensus 19 g~~~~i~~~~~-~-~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g-~----~~~lt~~~~~~~~~~~~~ 91 (706)
+...++.+... + .....++.|+||+.+|++. .....||+-++.++ + .+.+.... .+..
T Consensus 349 ~~~~pv~g~~g~~~~~~~s~avS~~g~~~A~v~---------~~~~~l~vg~~~~~~~~~~~~~~~~~~~------~Lt~ 413 (599)
T PRK13613 349 TDPEPVPGALGSGRVPLRRVAVSRDESRAAGIS---------ADGDSVYVGSLTPGASIGVHSWGVTADG------RLTS 413 (599)
T ss_pred CCcccCCCccCCCCCCccceEEcCCCceEEEEc---------CCCcEEEEeccCCCCccccccceeeccC------cccC
Confidence 44445544322 1 2567899999999999985 23357888765443 3 22333222 1678
Q ss_pred eEEecCCcEEE
Q 005240 92 FVWVNNSTLLI 102 (706)
Q Consensus 92 ~~wSpDg~~l~ 102 (706)
+.|.++| .|.
T Consensus 414 PS~d~~g-~vW 423 (599)
T PRK13613 414 PSWDGRG-DLW 423 (599)
T ss_pred CcCcCCC-CEE
Confidence 8999988 444
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.45 E-value=3.7 Score=47.94 Aligned_cols=82 Identities=10% Similarity=0.218 Sum_probs=46.3
Q ss_pred eEEEEccCCCceecCCC--ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCc
Q 005240 158 QLVLGSLDGTAKDFGTP--AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPV 235 (706)
Q Consensus 158 ~l~~~~l~g~~~~lt~~--~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~ 235 (706)
.+-+++-+|...-..+. +....++|-|.|..|+........ .+|..+.-+|-....+.-....+.
T Consensus 223 kirV~drEg~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd----------~~IvffErNGL~hg~f~l~~p~de--- 289 (1265)
T KOG1920|consen 223 KIRVYDREGALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSD----------SDIVFFERNGLRHGEFVLPFPLDE--- 289 (1265)
T ss_pred eEEEecccchhhcccCcccccccceeecCCCCeEeeeeecCCC----------CcEEEEecCCccccccccCCcccc---
Confidence 34444555544333333 455689999999999877665432 367777777644322211111110
Q ss_pred ccCccCCCCcceeeecCCCceEEE
Q 005240 236 CYNSVREGMRSISWRADKPSTLYW 259 (706)
Q Consensus 236 ~~~~~~~g~~~~~~spdg~~~l~~ 259 (706)
.-...+.|+.++.- |+.
T Consensus 290 ------~~ve~L~Wns~sdi-LAv 306 (1265)
T KOG1920|consen 290 ------KEVEELAWNSNSDI-LAV 306 (1265)
T ss_pred ------cchheeeecCCCCc-eee
Confidence 00337899999886 554
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.091 Score=56.57 Aligned_cols=67 Identities=13% Similarity=0.130 Sum_probs=46.2
Q ss_pred CCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceee-cccCCCccccccccceEEecCCcEEEEEec
Q 005240 30 GAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKP-LFESPDICLNAVFGSFVWVNNSTLLIFTIP 106 (706)
Q Consensus 30 ~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~-lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~ 106 (706)
+..+...+.||+|+.||.+... .......|++++...=...+ | .++.+ .+..+.|||||++|+..+.
T Consensus 525 GyEv~~l~~s~~gnliASaCKS-----~~~ehAvI~lw~t~~W~~~~~L---~~HsL--TVT~l~FSpdg~~LLsvsR 592 (764)
T KOG1063|consen 525 GYEVYALAISPTGNLIASACKS-----SLKEHAVIRLWNTANWLQVQEL---EGHSL--TVTRLAFSPDGRYLLSVSR 592 (764)
T ss_pred ceeEEEEEecCCCCEEeehhhh-----CCccceEEEEEeccchhhhhee---cccce--EEEEEEECCCCcEEEEeec
Confidence 3367889999999999988742 11445678999866533333 3 22211 2778999999999887764
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.41 E-value=2.7 Score=41.46 Aligned_cols=131 Identities=14% Similarity=0.146 Sum_probs=77.6
Q ss_pred ceEEEEccCC--CceecCCC-ceEeeeeeCCCCc--EEEEEeeccCcccccccccccceEEEEecCC-CeeEEcccCCCC
Q 005240 157 AQLVLGSLDG--TAKDFGTP-AVYTAVEPSPDQK--YVLITSMHRPYSYKVPCARFSQKVQVWTTDG-KLVRELCDLPPA 230 (706)
Q Consensus 157 ~~l~~~~l~g--~~~~lt~~-~~~~~~~~SpDG~--~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~l~~~~~~ 230 (706)
.+|.++|+.. +...|... +.+..+.|.|+-. +|+-.+.+ ..|.+|+++. ..+..+..+.+.
T Consensus 63 etI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdD-------------G~i~iw~~~~W~~~~slK~H~~~ 129 (362)
T KOG0294|consen 63 ETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDD-------------GHIIIWRVGSWELLKSLKAHKGQ 129 (362)
T ss_pred CcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCC-------------CcEEEEEcCCeEEeeeecccccc
Confidence 4688888843 55555555 7788899998875 55544333 3788888763 222333333221
Q ss_pred CCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCC
Q 005240 231 EDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDS 310 (706)
Q Consensus 231 ~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg 310 (706)
+..++..|.|+ |+... +++. .+..||+ -.|+.-.+.........+.|+|.|
T Consensus 130 -------------Vt~lsiHPS~K--LALsV---g~D~--------~lr~WNL---V~Gr~a~v~~L~~~at~v~w~~~G 180 (362)
T KOG0294|consen 130 -------------VTDLSIHPSGK--LALSV---GGDQ--------VLRTWNL---VRGRVAFVLNLKNKATLVSWSPQG 180 (362)
T ss_pred -------------cceeEecCCCc--eEEEE---cCCc--------eeeeehh---hcCccceeeccCCcceeeEEcCCC
Confidence 33678889888 55432 2222 3566776 444444444444444558999999
Q ss_pred ceEEEEeeccccceEEEEEcCC
Q 005240 311 LALVNETWYKTSQTRTWLVCPG 332 (706)
Q Consensus 311 ~~l~~~~~~~~~~~~l~~~d~~ 332 (706)
.+++.... ....||.++.+
T Consensus 181 d~F~v~~~---~~i~i~q~d~A 199 (362)
T KOG0294|consen 181 DHFVVSGR---NKIDIYQLDNA 199 (362)
T ss_pred CEEEEEec---cEEEEEecccH
Confidence 98887542 23456666644
|
|
| >KOG4840 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.066 Score=49.64 Aligned_cols=88 Identities=13% Similarity=0.129 Sum_probs=65.0
Q ss_pred hHHHHHHHCCeEEEEcCCC-CcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhC-
Q 005240 546 TSSLIFLARRFAVLAGPSI-PIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHA- 623 (706)
Q Consensus 546 ~~~~~l~~~G~~v~~~~~~-~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~- 623 (706)
.....|-+.+|..+.+.-+ ...|||.. ..++..+|+..+++++.-.++ ...|.++|||-|..=.++.+++.
T Consensus 57 ~L~~~lde~~wslVq~q~~Ssy~G~Gt~-----slk~D~edl~~l~~Hi~~~~f--St~vVL~GhSTGcQdi~yYlTnt~ 129 (299)
T KOG4840|consen 57 MLNRYLDENSWSLVQPQLRSSYNGYGTF-----SLKDDVEDLKCLLEHIQLCGF--STDVVLVGHSTGCQDIMYYLTNTT 129 (299)
T ss_pred HHHHHHhhccceeeeeeccccccccccc-----cccccHHHHHHHHHHhhccCc--ccceEEEecCccchHHHHHHHhcc
Confidence 4455667889988764333 23356653 345568899999998876665 34899999999998888887443
Q ss_pred -CCceeEEEeccCCCCCC
Q 005240 624 -PHLFCCGIARSGSYNKT 640 (706)
Q Consensus 624 -p~~~~a~v~~~~~~d~~ 640 (706)
|..++|+|+.+|+.|..
T Consensus 130 ~~r~iraaIlqApVSDrE 147 (299)
T KOG4840|consen 130 KDRKIRAAILQAPVSDRE 147 (299)
T ss_pred chHHHHHHHHhCccchhh
Confidence 56799999999998865
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.36 E-value=1.5 Score=45.27 Aligned_cols=56 Identities=18% Similarity=0.255 Sum_probs=30.6
Q ss_pred cCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEee
Q 005240 307 CDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 307 spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 371 (706)
.|....++..+ .++..+||.+.-.- ....+|.+-++..+ ...+.|+++|++|++..
T Consensus 389 i~~sdL~asGS--~~G~vrLW~i~~g~--r~i~~l~~ls~~Gf-----VNsl~f~~sgk~ivagi 444 (479)
T KOG0299|consen 389 IPGSDLLASGS--WSGCVRLWKIEDGL--RAINLLYSLSLVGF-----VNSLAFSNSGKRIVAGI 444 (479)
T ss_pred cccCceEEecC--CCCceEEEEecCCc--cccceeeecccccE-----EEEEEEccCCCEEEEec
Confidence 44444333332 34677888886443 23344444443221 12477899999887764
|
|
| >PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ] | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.21 Score=54.28 Aligned_cols=127 Identities=15% Similarity=0.139 Sum_probs=84.5
Q ss_pred EEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCC----
Q 005240 494 PLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGE---- 569 (706)
Q Consensus 494 ~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~---- 569 (706)
.|...+.+|.++. ++ ++.+-||++.. .+.. .. ....+..-+++||+++..+. |..+.
T Consensus 16 ~i~fev~LP~~WN-gR------~~~~GgGG~~G-----~i~~----~~--~~~~~~~~~~~G~A~~~TD~-Gh~~~~~~~ 76 (474)
T PF07519_consen 16 NIRFEVWLPDNWN-GR------FLQVGGGGFAG-----GINY----AD--GKASMATALARGYATASTDS-GHQGSAGSD 76 (474)
T ss_pred eEEEEEECChhhc-cC------eEEECCCeeeC-----cccc----cc--cccccchhhhcCeEEEEecC-CCCCCcccc
Confidence 7888899999764 22 55555554321 1111 00 00012334679999998333 22222
Q ss_pred CCCCCc-----hhhHHHHHHHHHHHHHHHHHcCC-CCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCCC
Q 005240 570 GDKLPN-----DRFVEQLVSSAEAAVEEVVRRGV-ADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNK 639 (706)
Q Consensus 570 g~~~~~-----~~~~~~~~~D~~~~~~~l~~~~~-id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d~ 639 (706)
...+.. .+|.-..+.+...+.+.|++..| -.|++-...|.|-||-.+++++-++|+.|.++++.+|.+++
T Consensus 77 ~~~~~~n~~~~~dfa~ra~h~~~~~aK~l~~~~Yg~~p~~sY~~GcS~GGRqgl~~AQryP~dfDGIlAgaPA~~~ 152 (474)
T PF07519_consen 77 DASFGNNPEALLDFAYRALHETTVVAKALIEAFYGKAPKYSYFSGCSTGGRQGLMAAQRYPEDFDGILAGAPAINW 152 (474)
T ss_pred cccccCCHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCCCceEEEEeCCCcchHHHHHHhChhhcCeEEeCCchHHH
Confidence 122332 23444557777777888888755 67899999999999999999999999999999999998764
|
It also includes several bacterial homologues of unknown function. |
| >PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics [] | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.092 Score=51.23 Aligned_cols=82 Identities=17% Similarity=0.170 Sum_probs=44.7
Q ss_pred hHHHHHHHCCeEEEEcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHh---
Q 005240 546 TSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAH--- 622 (706)
Q Consensus 546 ~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~--- 622 (706)
.+++.|...++.|+..... |.+.........+..+.+....|.-. . ...++.++|||+||.+|..+|.+
T Consensus 18 ~la~~l~~~~~~v~~i~~~---~~~~~~~~~~si~~la~~y~~~I~~~---~--~~gp~~L~G~S~Gg~lA~E~A~~Le~ 89 (229)
T PF00975_consen 18 PLARALPDDVIGVYGIEYP---GRGDDEPPPDSIEELASRYAEAIRAR---Q--PEGPYVLAGWSFGGILAFEMARQLEE 89 (229)
T ss_dssp HHHHHHTTTEEEEEEECST---TSCTTSHEESSHHHHHHHHHHHHHHH---T--SSSSEEEEEETHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCeEEEEEEecC---CCCCCCCCCCCHHHHHHHHHHHhhhh---C--CCCCeeehccCccHHHHHHHHHHHHH
Confidence 4455555444666553332 22212122233455555444443322 1 11389999999999999888843
Q ss_pred CCCceeEEEeccC
Q 005240 623 APHLFCCGIARSG 635 (706)
Q Consensus 623 ~p~~~~a~v~~~~ 635 (706)
....+..+++..+
T Consensus 90 ~G~~v~~l~liD~ 102 (229)
T PF00975_consen 90 AGEEVSRLILIDS 102 (229)
T ss_dssp TT-SESEEEEESC
T ss_pred hhhccCceEEecC
Confidence 2345777776664
|
Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A .... |
| >PRK13615 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=95.19 E-value=1.3 Score=48.84 Aligned_cols=143 Identities=17% Similarity=0.113 Sum_probs=81.0
Q ss_pred ccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCC
Q 005240 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDP 112 (706)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~ 112 (706)
...++.|+||+.+|++.. ...||+-... +..+.+.... ....+.|.++| ++....+. .
T Consensus 336 ~~s~avS~dg~~~A~v~~----------~~~l~vg~~~-~~~~~~~~~~------~Lt~PS~d~~g-~vWtv~~g--~-- 393 (557)
T PRK13615 336 ADAATLSADGRQAAVRNA----------SGVWSVGDGD-RDAVLLDTRP------GLVAPSLDAQG-YVWSTPAS--D-- 393 (557)
T ss_pred cccceEcCCCceEEEEcC----------CceEEEecCC-CcceeeccCC------ccccCcCcCCC-CEEEEeCC--C--
Confidence 367899999999999742 2366665543 4555554322 16678999998 45533211 0
Q ss_pred CCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCCCceecCCC----ceEeeeeeCCCCcE
Q 005240 113 PKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTP----AVYTAVEPSPDQKY 188 (706)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g~~~~lt~~----~~~~~~~~SpDG~~ 188 (706)
...+.....+|++..+... ..+..+.+|+||-+
T Consensus 394 -------------------------------------------~~~l~~~~~~G~~~~v~v~~~~~~~I~~lrvSrDG~R 430 (557)
T PRK13615 394 -------------------------------------------PRGLVAWGPDGVGHPVAVSWTATGRVVSLEVARDGAR 430 (557)
T ss_pred -------------------------------------------ceEEEEecCCCceEEeeccccCCCeeEEEEeCCCccE
Confidence 0233333334544333222 47889999999999
Q ss_pred EEEEeeccCcccccccccccceEEEEec--CCCeeEEc-ccCC-C-CCCCCcccCccCCCCcceeeecCCCceEEEEE
Q 005240 189 VLITSMHRPYSYKVPCARFSQKVQVWTT--DGKLVREL-CDLP-P-AEDIPVCYNSVREGMRSISWRADKPSTLYWVE 261 (706)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~l-~~~~-~-~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~ 261 (706)
+++...... ..+|++.-+ +++..+.| +... . ... .....+.|..++. |+.+.
T Consensus 431 ~Avi~~~~g----------~~~V~va~V~R~~~~P~~L~~~p~~l~~~l---------~~v~sl~W~~~~~--laVl~ 487 (557)
T PRK13615 431 VLVQLETGA----------GPQLLVASIVRDGGVPTSLTTTPLELLASP---------GTPLDATWVDELD--VATLT 487 (557)
T ss_pred EEEEEecCC----------CCEEEEEEEEeCCCcceEeeeccEEcccCc---------CcceeeEEcCCCE--EEEEe
Confidence 998765432 124444222 34444555 3321 0 000 1134789999887 66564
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=95.18 E-value=3 Score=40.69 Aligned_cols=39 Identities=13% Similarity=0.141 Sum_probs=30.3
Q ss_pred ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEccc
Q 005240 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCD 226 (706)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~ 226 (706)
..-+.++||||+..||+....+ .|.++|+.|.+...+..
T Consensus 44 PQWRkl~WSpD~tlLa~a~S~G-------------~i~vfdl~g~~lf~I~p 82 (282)
T PF15492_consen 44 PQWRKLAWSPDCTLLAYAESTG-------------TIRVFDLMGSELFVIPP 82 (282)
T ss_pred chheEEEECCCCcEEEEEcCCC-------------eEEEEecccceeEEcCc
Confidence 3456889999999999987653 78899999877665543
|
|
| >TIGR03712 acc_sec_asp2 accessory Sec system protein Asp2 | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.68 Score=48.76 Aligned_cols=114 Identities=15% Similarity=0.154 Sum_probs=64.8
Q ss_pred CeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEE-cCCCCcCCCC
Q 005240 492 GVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA-GPSIPIIGEG 570 (706)
Q Consensus 492 g~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~-~~~~~~~g~g 570 (706)
+.++-. .+-|-++. .|+.||..|= +.. -+| ...-+|.++|.--+. .+.|-..|
T Consensus 275 reEi~y-YFnPGD~K------PPL~VYFSGy-----------R~a-EGF-----Egy~MMk~Lg~PfLL~~DpRleGG-- 328 (511)
T TIGR03712 275 RQEFIY-YFNPGDFK------PPLNVYFSGY-----------RPA-EGF-----EGYFMMKRLGAPFLLIGDPRLEGG-- 328 (511)
T ss_pred CCeeEE-ecCCcCCC------CCeEEeeccC-----------ccc-Ccc-----hhHHHHHhcCCCeEEeeccccccc--
Confidence 445543 34466542 5999998762 111 112 223345667754432 33332212
Q ss_pred CCCC--chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCC
Q 005240 571 DKLP--NDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYN 638 (706)
Q Consensus 571 ~~~~--~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d 638 (706)
.|. ...+-+.+.+=|..++++ .++ +.+.+.+.|.|||.+-|++.++.- .-+|+|..-|+.+
T Consensus 329 -aFYlGs~eyE~~I~~~I~~~L~~---LgF-~~~qLILSGlSMGTfgAlYYga~l--~P~AIiVgKPL~N 391 (511)
T TIGR03712 329 -AFYLGSDEYEQGIINVIQEKLDY---LGF-DHDQLILSGLSMGTFGALYYGAKL--SPHAIIVGKPLVN 391 (511)
T ss_pred -eeeeCcHHHHHHHHHHHHHHHHH---hCC-CHHHeeeccccccchhhhhhcccC--CCceEEEcCcccc
Confidence 333 123333333333333333 455 778999999999999999999875 2378888888765
|
This protein is designated Asp2 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown. |
| >KOG3967 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.15 Score=47.02 Aligned_cols=76 Identities=21% Similarity=0.218 Sum_probs=42.6
Q ss_pred HHHHHHCCeEEEEcCCCCcCCCCCCCCc-hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCC
Q 005240 548 SLIFLARRFAVLAGPSIPIIGEGDKLPN-DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH 625 (706)
Q Consensus 548 ~~~l~~~G~~v~~~~~~~~~g~g~~~~~-~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~ 625 (706)
...-.+.||-|+..|....+-+-+...+ ..+....++-+..+..+++. ...+..|++.-|||||++++-++-+.|+
T Consensus 137 i~rAv~~Gygviv~N~N~~~kfye~k~np~kyirt~veh~~yvw~~~v~--pa~~~sv~vvahsyGG~~t~~l~~~f~~ 213 (297)
T KOG3967|consen 137 IKRAVAEGYGVIVLNPNRERKFYEKKRNPQKYIRTPVEHAKYVWKNIVL--PAKAESVFVVAHSYGGSLTLDLVERFPD 213 (297)
T ss_pred HHHHHHcCCcEEEeCCchhhhhhhcccCcchhccchHHHHHHHHHHHhc--ccCcceEEEEEeccCChhHHHHHHhcCC
Confidence 4445678998776333211111111111 11222233333333333332 2456789999999999999999999876
|
|
| >COG4782 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.2 Score=50.57 Aligned_cols=106 Identities=17% Similarity=0.142 Sum_probs=64.5
Q ss_pred eEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCe----EEEEcCCCCc-CCCCCCCCchhhHHHHHHHHHH
Q 005240 514 PCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRF----AVLAGPSIPI-IGEGDKLPNDRFVEQLVSSAEA 588 (706)
Q Consensus 514 p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~----~v~~~~~~~~-~g~g~~~~~~~~~~~~~~D~~~ 588 (706)
-++|++||=. ++|..--+..+|.....|+ +|+..+.+++ .||. ..+..-+....++..
T Consensus 117 ~vlvFvHGfN--------------ntf~dav~R~aqI~~d~g~~~~pVvFSWPS~g~l~~Yn---~DreS~~~Sr~aLe~ 179 (377)
T COG4782 117 TVLVFVHGFN--------------NTFEDAVYRTAQIVHDSGNDGVPVVFSWPSRGSLLGYN---YDRESTNYSRPALER 179 (377)
T ss_pred eEEEEEcccC--------------CchhHHHHHHHHHHhhcCCCcceEEEEcCCCCeeeecc---cchhhhhhhHHHHHH
Confidence 5899999831 2333323455666666664 3344333222 1221 122333445677778
Q ss_pred HHHHHHHcCCCCCCcEEEEEechHHHHHHHHHH----hC----CCceeEEEeccCCCC
Q 005240 589 AVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLA----HA----PHLFCCGIARSGSYN 638 (706)
Q Consensus 589 ~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~----~~----p~~~~a~v~~~~~~d 638 (706)
++.+|.+...+ .+|-|++||||.+++...+- +. +..|+=+|..+|-.|
T Consensus 180 ~lr~La~~~~~--~~I~ilAHSMGtwl~~e~LrQLai~~~~~l~~ki~nViLAaPDiD 235 (377)
T COG4782 180 LLRYLATDKPV--KRIYLLAHSMGTWLLMEALRQLAIRADRPLPAKIKNVILAAPDID 235 (377)
T ss_pred HHHHHHhCCCC--ceEEEEEecchHHHHHHHHHHHhccCCcchhhhhhheEeeCCCCC
Confidence 88999887543 68999999999999876652 22 235777888887654
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=94.97 E-value=4 Score=40.01 Aligned_cols=123 Identities=11% Similarity=0.145 Sum_probs=65.0
Q ss_pred eecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcce
Q 005240 169 KDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSI 247 (706)
Q Consensus 169 ~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~ 247 (706)
+.|..- ..+++++|.||.+.|+.+.+.. ..|+.++.+|+.++++.-....+ ...+
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~------------~~i~els~~G~vlr~i~l~g~~D------------~EgI 70 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEP------------GEIYELSLDGKVLRRIPLDGFGD------------YEGI 70 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTT------------TEEEEEETT--EEEEEE-SS-SS------------EEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCC------------CEEEEEcCCCCEEEEEeCCCCCC------------ceeE
Confidence 334433 4688999999999998777663 47888998887777654332111 2256
Q ss_pred eeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCc-----eEEe-----ecccccccceecCCCceEEEEe
Q 005240 248 SWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP-----EILH-----KLDLRFRSVSWCDDSLALVNET 317 (706)
Q Consensus 248 ~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~-----~~l~-----~~~~~~~~~~wspDg~~l~~~~ 317 (706)
.+.-++. ++ +.... +..|+.++++. .+... +.+. .....+..++|.+.+..|+...
T Consensus 71 ~y~g~~~--~v-l~~Er----------~~~L~~~~~~~-~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~k 136 (248)
T PF06977_consen 71 TYLGNGR--YV-LSEER----------DQRLYIFTIDD-DTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAK 136 (248)
T ss_dssp EE-STTE--EE-EEETT----------TTEEEEEEE-----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEE
T ss_pred EEECCCE--EE-EEEcC----------CCcEEEEEEec-cccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEe
Confidence 6765553 22 32111 12355555521 22221 1121 1234467899999988888764
Q ss_pred eccccceEEEEEcC
Q 005240 318 WYKTSQTRTWLVCP 331 (706)
Q Consensus 318 ~~~~~~~~l~~~d~ 331 (706)
++ ....||.++.
T Consensus 137 -E~-~P~~l~~~~~ 148 (248)
T PF06977_consen 137 -ER-KPKRLYEVNG 148 (248)
T ss_dssp -ES-SSEEEEEEES
T ss_pred -CC-CChhhEEEcc
Confidence 33 4567898886
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=94.82 E-value=1.8 Score=42.92 Aligned_cols=51 Identities=14% Similarity=0.125 Sum_probs=34.2
Q ss_pred eEEEEcc-CCCceecCCC-----ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCee
Q 005240 158 QLVLGSL-DGTAKDFGTP-----AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV 221 (706)
Q Consensus 158 ~l~~~~l-~g~~~~lt~~-----~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 221 (706)
.|-++++ +.....+..+ +.+.++.||+||.+|+-..++ -.|.+|+++.++.
T Consensus 159 svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmD-------------hslk~W~l~~~~f 215 (385)
T KOG1034|consen 159 SVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMD-------------HSLKLWRLNVKEF 215 (385)
T ss_pred eEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCc-------------ceEEEEecChhHH
Confidence 4555566 3355555443 577899999999998744433 3789999986543
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.79 E-value=7.4 Score=42.14 Aligned_cols=119 Identities=13% Similarity=0.119 Sum_probs=67.4
Q ss_pred eEEEEccCC--CceecCCC--ceEeeeeeCC-CCcEEEEEeeccCcccccccccccceEEEEecCCCe-eEEcccCCCCC
Q 005240 158 QLVLGSLDG--TAKDFGTP--AVYTAVEPSP-DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL-VRELCDLPPAE 231 (706)
Q Consensus 158 ~l~~~~l~g--~~~~lt~~--~~~~~~~~Sp-DG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~~~ 231 (706)
.|-+++-++ ...+..++ ..+..+++.| |-...+-.+-+ ..+-+|.+.... ..+|..+.
T Consensus 120 ~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLD-------------rTVKVWslgs~~~nfTl~gHe--- 183 (794)
T KOG0276|consen 120 TIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLD-------------RTVKVWSLGSPHPNFTLEGHE--- 183 (794)
T ss_pred EEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeecc-------------ccEEEEEcCCCCCceeeeccc---
Confidence 455555544 56666666 6889999999 44555443333 478899987543 23333221
Q ss_pred CCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCC-CCceEEeecccccccceecCCC
Q 005240 232 DIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEG-EKPEILHKLDLRFRSVSWCDDS 310 (706)
Q Consensus 232 ~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~~~~l~~~~~~~~~~~wspDg 310 (706)
.|+..+.|-+-|.. =|.++ +++. ..+.+||- .+ ..++.|..+...++.+.|.|.=
T Consensus 184 ----------kGVN~Vdyy~~gdk-pylIs---gaDD-------~tiKvWDy---Qtk~CV~TLeGHt~Nvs~v~fhp~l 239 (794)
T KOG0276|consen 184 ----------KGVNCVDYYTGGDK-PYLIS---GADD-------LTIKVWDY---QTKSCVQTLEGHTNNVSFVFFHPEL 239 (794)
T ss_pred ----------cCcceEEeccCCCc-ceEEe---cCCC-------ceEEEeec---chHHHHHHhhcccccceEEEecCCC
Confidence 34445555555543 33332 2222 24778887 33 2455666666777777787765
Q ss_pred ceEEEE
Q 005240 311 LALVNE 316 (706)
Q Consensus 311 ~~l~~~ 316 (706)
..|+..
T Consensus 240 piiisg 245 (794)
T KOG0276|consen 240 PIIISG 245 (794)
T ss_pred cEEEEe
Confidence 544443
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.96 Score=44.70 Aligned_cols=66 Identities=15% Similarity=0.174 Sum_probs=46.9
Q ss_pred CCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEE
Q 005240 29 DGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (706)
Q Consensus 29 ~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~ 104 (706)
.|..+...++.|+--.|+.+.+ ....|.+++..+.....+..+-+ +-.+.+-++.||+||.+|+..
T Consensus 134 hG~sINeik~~p~~~qlvls~S---------kD~svRlwnI~~~~Cv~VfGG~e-gHrdeVLSvD~~~~gd~i~Sc 199 (385)
T KOG1034|consen 134 HGGSINEIKFHPDRPQLVLSAS---------KDHSVRLWNIQTDVCVAVFGGVE-GHRDEVLSVDFSLDGDRIASC 199 (385)
T ss_pred cCccchhhhcCCCCCcEEEEec---------CCceEEEEeccCCeEEEEecccc-cccCcEEEEEEcCCCCeeecc
Confidence 4556888999999988877663 34677778888888777653221 223346789999999988754
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=94.71 E-value=3.3 Score=40.44 Aligned_cols=32 Identities=13% Similarity=0.213 Sum_probs=26.2
Q ss_pred ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCC
Q 005240 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK 219 (706)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 219 (706)
..+-.+.+||||+.|+.....+ .|.+|++.+=
T Consensus 230 d~i~kmSlSPdg~~La~ih~sG-------------~lsLW~iPsL 261 (282)
T PF15492_consen 230 DGIFKMSLSPDGSLLACIHFSG-------------SLSLWEIPSL 261 (282)
T ss_pred CceEEEEECCCCCEEEEEEcCC-------------eEEEEecCcc
Confidence 5677899999999999888764 7899988753
|
|
| >PF10142 PhoPQ_related: PhoPQ-activated pathogenicity-related protein; InterPro: IPR009199 Proteins in this entry are believed to play a role in virulence/pathogenicity in Salmonella | Back alignment and domain information |
|---|
Probab=94.56 E-value=3.2 Score=43.07 Aligned_cols=108 Identities=16% Similarity=0.183 Sum_probs=71.3
Q ss_pred HHHHHHHHHHH----HcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEecc-CCCCCC---------CC-------
Q 005240 584 SSAEAAVEEVV----RRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARS-GSYNKT---------LT------- 642 (706)
Q Consensus 584 ~D~~~~~~~l~----~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~-~~~d~~---------~~------- 642 (706)
+-+..|++.+. +...++.++.+|.|.|==|..|..+++-+ .|++|.+.++ .+.|.. +.
T Consensus 150 ka~vrAMD~vq~~~~~~~~~~i~~FvV~GaSKRGWTtWltaa~D-~RV~aivP~Vid~LN~~~~l~h~y~~yG~~ws~a~ 228 (367)
T PF10142_consen 150 KAAVRAMDAVQEFLKKKFGVNIEKFVVTGASKRGWTTWLTAAVD-PRVKAIVPIVIDVLNMKANLEHQYRSYGGNWSFAF 228 (367)
T ss_pred HHHHHHHHHHHHHHHhhcCCCccEEEEeCCchHhHHHHHhhccC-cceeEEeeEEEccCCcHHHHHHHHHHhCCCCccch
Confidence 34444444333 33446778999999999999999999866 6888887655 222211 00
Q ss_pred -------------------------Cccch----------------------HHHHHHHHHhCCCcEEEEEeCCCCccCC
Q 005240 643 -------------------------PFGFQ----------------------AERFFDALKGHGALSRLVLLPFEHHVYA 675 (706)
Q Consensus 643 -------------------------~~~~~----------------------~~~~~~~l~~~~~~~~~~~~~~~~H~~~ 675 (706)
|..|. ..-+++.|.. +..+.++|+.+|...
T Consensus 229 ~dY~~~gi~~~l~tp~f~~L~~ivDP~~Y~~rL~~PK~ii~atgDeFf~pD~~~~y~d~L~G---~K~lr~vPN~~H~~~ 305 (367)
T PF10142_consen 229 QDYYNEGITQQLDTPEFDKLMQIVDPYSYRDRLTMPKYIINATGDEFFVPDSSNFYYDKLPG---EKYLRYVPNAGHSLI 305 (367)
T ss_pred hhhhHhCchhhcCCHHHHHHHHhcCHHHHHHhcCccEEEEecCCCceeccCchHHHHhhCCC---CeeEEeCCCCCcccc
Confidence 11110 0055555554 668999999999886
Q ss_pred CcccHHHHHHHHHHHHHHHhccCC
Q 005240 676 ARENVMHVIWETDRWLQKYCLSNT 699 (706)
Q Consensus 676 ~~~~~~~~~~~~~~f~~~~l~~~~ 699 (706)
. .+..+.+..|+.+.+...+
T Consensus 306 ~----~~~~~~l~~f~~~~~~~~~ 325 (367)
T PF10142_consen 306 G----SDVVQSLRAFYNRIQNGRP 325 (367)
T ss_pred h----HHHHHHHHHHHHHHHcCCC
Confidence 5 6788899999999765544
|
Salmonella typhi PqaA has been shown to be activated by PhoP/Q two-component regulatory system, which regulates many virulence genes []. It has been also shown to confer resistance to antimicrobial peptides (melittin) []. Members of this family are predicted to belong to the alpha/beta hydrolase domain superfamily. |
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.53 E-value=1.4 Score=47.50 Aligned_cols=143 Identities=11% Similarity=0.112 Sum_probs=74.0
Q ss_pred ceEEEEcc--CC--CceecCCC-ceEeeeee-CCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCC
Q 005240 157 AQLVLGSL--DG--TAKDFGTP-AVYTAVEP-SPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPA 230 (706)
Q Consensus 157 ~~l~~~~l--~g--~~~~lt~~-~~~~~~~~-SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~ 230 (706)
..+.+++. ++ -...|.+. .++.++++ .++...+ .+..- ..+|++||++.+..+.+......
T Consensus 95 tTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lv-aSgGL------------D~~IflWDin~~~~~l~~s~n~~ 161 (735)
T KOG0308|consen 95 TTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELV-ASGGL------------DRKIFLWDINTGTATLVASFNNV 161 (735)
T ss_pred ceEEEeecccCcchhHhhhhcccchheeeeecccCceeE-EecCC------------CccEEEEEccCcchhhhhhcccc
Confidence 44555555 32 23344444 67788887 5554433 33322 35899999996644333222111
Q ss_pred CCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCC
Q 005240 231 EDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDS 310 (706)
Q Consensus 231 ~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg 310 (706)
......+ +-..+++.++-.+.|. ++ + .++... .|.+||.. ...+.-.|-.+...+..+..++||
T Consensus 162 t~~sl~s-G~k~siYSLA~N~t~t--~i-v---sGgtek-------~lr~wDpr--t~~kimkLrGHTdNVr~ll~~dDG 225 (735)
T KOG0308|consen 162 TVNSLGS-GPKDSIYSLAMNQTGT--II-V---SGGTEK-------DLRLWDPR--TCKKIMKLRGHTDNVRVLLVNDDG 225 (735)
T ss_pred ccccCCC-CCccceeeeecCCcce--EE-E---ecCccc-------ceEEeccc--cccceeeeeccccceEEEEEcCCC
Confidence 0000000 0012233444444442 22 2 222221 36777762 334455566777788888999999
Q ss_pred ceEEEEeeccccceEEEEEc
Q 005240 311 LALVNETWYKTSQTRTWLVC 330 (706)
Q Consensus 311 ~~l~~~~~~~~~~~~l~~~d 330 (706)
.+++.++++ +..+||-+.
T Consensus 226 t~~ls~sSD--gtIrlWdLg 243 (735)
T KOG0308|consen 226 TRLLSASSD--GTIRLWDLG 243 (735)
T ss_pred CeEeecCCC--ceEEeeecc
Confidence 999987633 445566553
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=94.34 E-value=4.1 Score=39.78 Aligned_cols=88 Identities=23% Similarity=0.359 Sum_probs=55.5
Q ss_pred ceEEEEcc-CCCc-eecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecC--CCeeEEcccCCCCC
Q 005240 157 AQLVLGSL-DGTA-KDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD--GKLVRELCDLPPAE 231 (706)
Q Consensus 157 ~~l~~~~l-~g~~-~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~l~~~~~~~ 231 (706)
.++-+.|+ .|.. ..|... +.+..+.|||-..+|+++.... ..+.+||+. ++..+.|-.... .
T Consensus 168 ~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaD------------g~irlWDiRrasgcf~~lD~hn~-k 234 (397)
T KOG4283|consen 168 VQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSAD------------GAIRLWDIRRASGCFRVLDQHNT-K 234 (397)
T ss_pred CcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCC------------ceEEEEEeecccceeEEeecccC-c
Confidence 57788898 6743 445444 7899999999999999887653 368888876 455555544332 1
Q ss_pred CCCcc-cCccCCC-CcceeeecCCCceEE
Q 005240 232 DIPVC-YNSVREG-MRSISWRADKPSTLY 258 (706)
Q Consensus 232 ~~p~~-~~~~~~g-~~~~~~spdg~~~l~ 258 (706)
..|.. .+....| +..++|+.||.+ |+
T Consensus 235 ~~p~~~~n~ah~gkvngla~tSd~~~-l~ 262 (397)
T KOG4283|consen 235 RPPILKTNTAHYGKVNGLAWTSDARY-LA 262 (397)
T ss_pred cCccccccccccceeeeeeecccchh-hh
Confidence 11111 1111223 237899999987 54
|
|
| >PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.2 Score=54.03 Aligned_cols=150 Identities=9% Similarity=0.000 Sum_probs=76.4
Q ss_pred EEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCC--C--chHHHHHHHCCeEEEEc
Q 005240 486 KYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGM--T--PTSSLIFLARRFAVLAG 561 (706)
Q Consensus 486 ~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~l~~~G~~v~~~ 561 (706)
.+....+..+..|++.-.+ ++.. .|+||++.|||=+++-.....-.||...... . ......|.+..-+++.
T Consensus 17 ~~~~~~~~~lfyw~~~s~~-~~~~---~Pl~~wlnGGPG~SS~~g~f~e~GP~~~~~~~~~~l~~n~~sW~~~an~l~i- 91 (415)
T PF00450_consen 17 PVNDNENAHLFYWFFESRN-DPED---DPLILWLNGGPGCSSMWGLFGENGPFRINPDGPYTLEDNPYSWNKFANLLFI- 91 (415)
T ss_dssp EECTTTTEEEEEEEEE-SS-GGCS---S-EEEEEE-TTTB-THHHHHCTTSSEEEETTSTSEEEE-TT-GGGTSEEEEE-
T ss_pred ecCCCCCcEEEEEEEEeCC-CCCC---ccEEEEecCCceeccccccccccCceEEeecccccccccccccccccceEEE-
Confidence 3333356788888886655 4333 6999999999854422111111222222200 0 1112233443333332
Q ss_pred CCCCcCCCCCCCCchh---hHHHHHHHHHHHHHHHHHc-CCCCCCcEEEEEechHHHHHHHHH----HhC------CCce
Q 005240 562 PSIPIIGEGDKLPNDR---FVEQLVSSAEAAVEEVVRR-GVADPSRIAVGGHSYGAFMTAHLL----AHA------PHLF 627 (706)
Q Consensus 562 ~~~~~~g~g~~~~~~~---~~~~~~~D~~~~~~~l~~~-~~id~~~i~i~G~S~GG~~a~~~~----~~~------p~~~ 627 (706)
+---..|+........ .-++..+|+..++....++ +.....++.|+|-||||..+..++ .+. +=.+
T Consensus 92 D~PvGtGfS~~~~~~~~~~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYgG~yvP~~a~~i~~~~~~~~~~~inL 171 (415)
T PF00450_consen 92 DQPVGTGFSYGNDPSDYVWNDDQAAEDLYEFLQQFFQKFPEYRSNPLYIAGESYGGHYVPALASYILQQNKKGDQPKINL 171 (415)
T ss_dssp --STTSTT-EESSGGGGS-SHHHHHHHHHHHHHHHHHHSGGGTTSEEEEEEETTHHHHHHHHHHHHHHHTCC--STTSEE
T ss_pred eecCceEEeeccccccccchhhHHHHHHHHHHHHhhhhhhhccCCCEEEEccccccccchhhHHhhhhcccccccccccc
Confidence 2112234433322222 2356677777777644443 445566999999999998765554 333 2248
Q ss_pred eEEEeccCCCCCC
Q 005240 628 CCGIARSGSYNKT 640 (706)
Q Consensus 628 ~a~v~~~~~~d~~ 640 (706)
++++...|..+..
T Consensus 172 kGi~IGng~~dp~ 184 (415)
T PF00450_consen 172 KGIAIGNGWIDPR 184 (415)
T ss_dssp EEEEEESE-SBHH
T ss_pred ccceecCcccccc
Confidence 8999999987743
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S10 (clan SC). The type example is carboxypeptidase Y from Saccharomyces cerevisiae (Baker's yeast) []. All known carboxypeptidases are either metallo carboxypeptidases or serine carboxypeptidases (3.4.16.5 from EC and 3.4.16.6 from EC). The catalytic activity of the serine carboxypeptidases, like that of the trypsin family serine proteases, is provided by a charge relay system involving an aspartic acid residue hydrogen-bonded to a histidine, which is itself hydrogen-bonded to a serine []. The sequences surrounding the active site serine and histidine residues are highly conserved in all the serine carboxypeptidases.; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 1AC5_A 1WHS_B 3SC2_B 1WHT_A 1BCR_A 1BCS_A 1GXS_A 1IVY_A 1WPX_A 1YSC_A .... |
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.56 Score=47.08 Aligned_cols=111 Identities=20% Similarity=0.284 Sum_probs=69.6
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCc--eeecc-cCCCccccccccceEEecCCcEEEEEecCC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE--AKPLF-ESPDICLNAVFGSFVWVNNSTLLIFTIPSS 108 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~--~~~lt-~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~ 108 (706)
.+-...|||.-+-+.++++- ++ .|-++|...+. +-..+ .+.. .+.-+.|+.+-..|++..+
T Consensus 259 SVEDLqWSptE~~vfaScS~-------Dg--sIrIWDiRs~~~~~~~~~kAh~s-----DVNVISWnr~~~lLasG~D-- 322 (440)
T KOG0302|consen 259 SVEDLQWSPTEDGVFASCSC-------DG--SIRIWDIRSGPKKAAVSTKAHNS-----DVNVISWNRREPLLASGGD-- 322 (440)
T ss_pred chhhhccCCccCceEEeeec-------Cc--eEEEEEecCCCccceeEeeccCC-----ceeeEEccCCcceeeecCC--
Confidence 57889999999999887743 34 45555655552 22222 2222 2777889877776776532
Q ss_pred CCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccC----CCcee-cCCC-ceEeeeee
Q 005240 109 RRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD----GTAKD-FGTP-AVYTAVEP 182 (706)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~----g~~~~-lt~~-~~~~~~~~ 182 (706)
.+.+-++||. |++.. +... ..++++.|
T Consensus 323 -----------------------------------------------dGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW 355 (440)
T KOG0302|consen 323 -----------------------------------------------DGTLSIWDLRQFKSGQPVATFKYHKAPITSIEW 355 (440)
T ss_pred -----------------------------------------------CceEEEEEhhhccCCCcceeEEeccCCeeEEEe
Confidence 1556666762 23332 2233 68899999
Q ss_pred CCCCcEEEEEeeccCcccccccccccceEEEEecC
Q 005240 183 SPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD 217 (706)
Q Consensus 183 SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 217 (706)
+|....++..+... .+|.+||+.
T Consensus 356 ~p~e~s~iaasg~D------------~QitiWDls 378 (440)
T KOG0302|consen 356 HPHEDSVIAASGED------------NQITIWDLS 378 (440)
T ss_pred ccccCceEEeccCC------------CcEEEEEee
Confidence 99777665554432 489999986
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=94.22 E-value=1.1 Score=44.12 Aligned_cols=92 Identities=12% Similarity=0.134 Sum_probs=59.9
Q ss_pred ceeEEEEEcCCCce---eecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCccccccc
Q 005240 61 KLRVWIADAETGEA---KPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRM 137 (706)
Q Consensus 61 ~~~l~~~d~~~g~~---~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (706)
..+|-++++...+. .-|-.+... +..++..-+|..||..+.
T Consensus 158 ~GqvQi~dL~~~~~~~p~~I~AH~s~-----Iacv~Ln~~Gt~vATaSt------------------------------- 201 (346)
T KOG2111|consen 158 TGQVQIVDLASTKPNAPSIINAHDSD-----IACVALNLQGTLVATAST------------------------------- 201 (346)
T ss_pred cceEEEEEhhhcCcCCceEEEcccCc-----eeEEEEcCCccEEEEecc-------------------------------
Confidence 46777778765444 333333332 677888899998886532
Q ss_pred chhccCCchhhhhhhhcccceEEEEcc-CC-CceecCCC---ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEE
Q 005240 138 TDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTP---AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQ 212 (706)
Q Consensus 138 ~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g-~~~~lt~~---~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~ 212 (706)
..+-|-++|. +| ....+-.+ ..+..++||||+++|+..++.+ .+.
T Consensus 202 -----------------kGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKg-------------TlH 251 (346)
T KOG2111|consen 202 -----------------KGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKG-------------TLH 251 (346)
T ss_pred -----------------CcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCC-------------eEE
Confidence 1133445566 66 34444433 6788999999999999988764 577
Q ss_pred EEecCC
Q 005240 213 VWTTDG 218 (706)
Q Consensus 213 ~~~~~~ 218 (706)
++.+..
T Consensus 252 iF~l~~ 257 (346)
T KOG2111|consen 252 IFSLRD 257 (346)
T ss_pred EEEeec
Confidence 776653
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.17 E-value=8.2 Score=40.13 Aligned_cols=172 Identities=10% Similarity=0.047 Sum_probs=83.5
Q ss_pred ceEEEEccCC-Ccee-cCC--C-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecC--CCeeEEcccCCC
Q 005240 157 AQLVLGSLDG-TAKD-FGT--P-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD--GKLVRELCDLPP 229 (706)
Q Consensus 157 ~~l~~~~l~g-~~~~-lt~--~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~l~~~~~ 229 (706)
+.|-..|+.+ .... ++. . .....+.++.+...++|..+-+ ..-+||+. +++...+.-+.-
T Consensus 257 GtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G-------------~f~~iD~R~~~s~~~~~~lh~k 323 (498)
T KOG4328|consen 257 GTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVG-------------NFNVIDLRTDGSEYENLRLHKK 323 (498)
T ss_pred ceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeeccc-------------ceEEEEeecCCccchhhhhhhc
Confidence 4566667754 2222 221 1 3556777888888887776553 23344443 333222221110
Q ss_pred CCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCce-EE--eeccccccccee
Q 005240 230 AEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPE-IL--HKLDLRFRSVSW 306 (706)
Q Consensus 230 ~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~-~l--~~~~~~~~~~~w 306 (706)
-+..+++.|-..+.|+ . .+ .+....+||+.-+.+.. . .| ..+...+.+..|
T Consensus 324 -------------KI~sv~~NP~~p~~la-T---~s--------~D~T~kIWD~R~l~~K~-sp~lst~~HrrsV~sAyF 377 (498)
T KOG4328|consen 324 -------------KITSVALNPVCPWFLA-T---AS--------LDQTAKIWDLRQLRGKA-SPFLSTLPHRRSVNSAYF 377 (498)
T ss_pred -------------ccceeecCCCCchhee-e---cc--------cCcceeeeehhhhcCCC-CcceecccccceeeeeEE
Confidence 1335677777776233 2 11 12246677774333222 1 23 345678889999
Q ss_pred cCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCcc-cccccCCCCCceEeccCCCEEEEee
Q 005240 307 CDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVF-ENVYSDPGSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 307 spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~s~dg~~l~~~~ 371 (706)
||+|-.|+.+. .+ ...+||-...=+..-++......+- ..... ..|.-.|.||-.+|+...
T Consensus 378 SPs~gtl~TT~-~D-~~IRv~dss~~sa~~~p~~~I~Hn~~t~Rwl--T~fKA~W~P~~~li~vg~ 439 (498)
T KOG4328|consen 378 SPSGGTLLTTC-QD-NEIRVFDSSCISAKDEPLGTIPHNNRTGRWL--TPFKAAWDPDYNLIVVGR 439 (498)
T ss_pred cCCCCceEeec-cC-CceEEeecccccccCCccceeeccCcccccc--cchhheeCCCccEEEEec
Confidence 99987777653 32 3444554421111123333321110 00000 123345888877776653
|
|
| >PF11339 DUF3141: Protein of unknown function (DUF3141); InterPro: IPR024501 This family of proteins appears to be predominantly expressed in Proteobacteria | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.84 Score=48.48 Aligned_cols=50 Identities=26% Similarity=0.246 Sum_probs=36.9
Q ss_pred HHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCcee-EEEeccCCCCCC
Q 005240 590 VEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFC-CGIARSGSYNKT 640 (706)
Q Consensus 590 ~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~-a~v~~~~~~d~~ 640 (706)
++.+.++.. |..|..++|-|.||.+++++++..|+.+. .+++.+|+.-|.
T Consensus 129 v~~V~~~hp-~~~kp~liGnCQgGWa~~mlAA~~Pd~~gplvlaGaPlsywa 179 (581)
T PF11339_consen 129 VEEVAERHP-DAPKPNLIGNCQGGWAAMMLAALRPDLVGPLVLAGAPLSYWA 179 (581)
T ss_pred HHHHHHhCC-CCCCceEEeccHHHHHHHHHHhcCcCccCceeecCCCccccc
Confidence 444444432 33499999999999999999999999987 555566665444
|
Their function is unknown. |
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.58 Score=50.85 Aligned_cols=116 Identities=9% Similarity=0.088 Sum_probs=70.0
Q ss_pred eEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCC-CCCcccCccCCCCcceeeecCCC
Q 005240 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAE-DIPVCYNSVREGMRSISWRADKP 254 (706)
Q Consensus 176 ~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~-~~p~~~~~~~~g~~~~~~spdg~ 254 (706)
....++..|..++++..-.+ ..|.++++..++.+++..+...+ +.+. .+..-|.|
T Consensus 598 TlYDm~Vdp~~k~v~t~cQD-------------rnirif~i~sgKq~k~FKgs~~~eG~lI----------Kv~lDPSg- 653 (1080)
T KOG1408|consen 598 TLYDMAVDPTSKLVVTVCQD-------------RNIRIFDIESGKQVKSFKGSRDHEGDLI----------KVILDPSG- 653 (1080)
T ss_pred eEEEeeeCCCcceEEEEecc-------------cceEEEeccccceeeeecccccCCCceE----------EEEECCCc-
Confidence 44566677777777655433 47999999977777666654332 2222 23344444
Q ss_pred ceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccccceEEEEEcC
Q 005240 255 STLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCP 331 (706)
Q Consensus 255 ~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~ 331 (706)
+|.+.... + ..|.++|.- .+..+-+.+.+...+..+.|++|=+.|+..+.+ +=.-+|.+..
T Consensus 654 --iY~atScs---------d-ktl~~~Df~--sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgD--gCIFvW~lp~ 714 (1080)
T KOG1408|consen 654 --IYLATSCS---------D-KTLCFVDFV--SGECVAQMTGHSEAVTGVKFLNDCKHLISVSGD--GCIFVWKLPL 714 (1080)
T ss_pred --cEEEEeec---------C-CceEEEEec--cchhhhhhcCcchheeeeeecccchhheeecCC--ceEEEEECch
Confidence 44332111 1 136666661 334456678889999999999999999877522 3334555554
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.98 E-value=1.1 Score=49.41 Aligned_cols=135 Identities=10% Similarity=0.082 Sum_probs=78.1
Q ss_pred ceEEEEccCC-CceecCCC--ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecC--CCeeEEcccCCCCC
Q 005240 157 AQLVLGSLDG-TAKDFGTP--AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD--GKLVRELCDLPPAE 231 (706)
Q Consensus 157 ~~l~~~~l~g-~~~~lt~~--~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~l~~~~~~~ 231 (706)
+.+-.+|+.. .-...+.. ..++.++|||--...+++..+. ..+.+||+- ..-.++++.+.+.
T Consensus 156 g~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~ds------------G~lqlWDlRqp~r~~~k~~AH~Gp- 222 (839)
T KOG0269|consen 156 GTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDS------------GYLQLWDLRQPDRCEKKLTAHNGP- 222 (839)
T ss_pred ceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCC------------ceEEEeeccCchhHHHHhhcccCc-
Confidence 5666777732 33333333 6788999999655554444332 368889986 2234455555432
Q ss_pred CCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEE-e-ecccccccceecCC
Q 005240 232 DIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEIL-H-KLDLRFRSVSWCDD 309 (706)
Q Consensus 232 ~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l-~-~~~~~~~~~~wspD 309 (706)
+..+.|+|++.. |+ ..+.+. .+.+|+. .+.+...+ + .....+..+.|-|+
T Consensus 223 ------------V~c~nwhPnr~~-lA----TGGRDK--------~vkiWd~---t~~~~~~~~tInTiapv~rVkWRP~ 274 (839)
T KOG0269|consen 223 ------------VLCLNWHPNREW-LA----TGGRDK--------MVKIWDM---TDSRAKPKHTINTIAPVGRVKWRPA 274 (839)
T ss_pred ------------eEEEeecCCCce-ee----ecCCCc--------cEEEEec---cCCCccceeEEeecceeeeeeeccC
Confidence 346799997765 54 122122 4777877 44554443 2 45677888999999
Q ss_pred CceEEEEeeccccceEEEEEcCCC
Q 005240 310 SLALVNETWYKTSQTRTWLVCPGS 333 (706)
Q Consensus 310 g~~l~~~~~~~~~~~~l~~~d~~~ 333 (706)
..+.+....- .....|+++|+.-
T Consensus 275 ~~~hLAtcsm-v~dtsV~VWDvrR 297 (839)
T KOG0269|consen 275 RSYHLATCSM-VVDTSVHVWDVRR 297 (839)
T ss_pred ccchhhhhhc-cccceEEEEeecc
Confidence 7654433211 1334466666543
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=93.98 E-value=2.5 Score=44.62 Aligned_cols=131 Identities=12% Similarity=0.115 Sum_probs=71.1
Q ss_pred ceEEEEcc---CCCc---eecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEE-ecCCC-----eeEE
Q 005240 157 AQLVLGSL---DGTA---KDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVW-TTDGK-----LVRE 223 (706)
Q Consensus 157 ~~l~~~~l---~g~~---~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~-----~~~~ 223 (706)
.+|++++- +|.. +.+... .....+++.++| |+++.. .+|+.+ +.++. +.+.
T Consensus 47 ~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~--------------~~i~~~~d~~gdg~ad~~~~~ 110 (367)
T TIGR02604 47 DRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATP--------------PDILFLRDKDGDDKADGEREV 110 (367)
T ss_pred CEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCC--------------CeEEEEeCCCCCCCCCCccEE
Confidence 36776654 3432 333333 456788999998 555432 256655 44321 3333
Q ss_pred cccCCCCC-CCCcccCccCCCCcceeeecCCCceEEEEEeccCCC--------CccccCccceeeeecCCCCCCCCceEE
Q 005240 224 LCDLPPAE-DIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGD--------ANVEVSPRDIIYTQPAEPAEGEKPEIL 294 (706)
Q Consensus 224 l~~~~~~~-~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~--------~~~~~~~~~~l~~~d~~~~~~~~~~~l 294 (706)
|...-... ..+ ......+.|.|||. ||+.....+.. ..........+++++. ++++.+.+
T Consensus 111 l~~~~~~~~~~~------~~~~~~l~~gpDG~--LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p---dg~~~e~~ 179 (367)
T TIGR02604 111 LLSGFGGQINNH------HHSLNSLAWGPDGW--LYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP---DGGKLRVV 179 (367)
T ss_pred EEEccCCCCCcc------cccccCceECCCCC--EEEecccCCCceeccCCCccCcccccCceEEEEec---CCCeEEEE
Confidence 43321111 001 12244789999996 77654321110 0011123457899888 67777666
Q ss_pred eecccccccceecCCCceEE
Q 005240 295 HKLDLRFRSVSWCDDSLALV 314 (706)
Q Consensus 295 ~~~~~~~~~~~wspDg~~l~ 314 (706)
...-.....++|+|+|..++
T Consensus 180 a~G~rnp~Gl~~d~~G~l~~ 199 (367)
T TIGR02604 180 AHGFQNPYGHSVDSWGDVFF 199 (367)
T ss_pred ecCcCCCccceECCCCCEEE
Confidence 55555567889999987544
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.86 Score=46.49 Aligned_cols=160 Identities=15% Similarity=0.110 Sum_probs=94.3
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~ 111 (706)
+.-..++...|..|+.+ +..-.||.++.+++.++.++......--....++..+++|. |||+....+-+
T Consensus 116 RPLGl~f~~~ggdL~Va----------DAYlGL~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~~g~-vyFTDSSsk~~ 184 (376)
T KOG1520|consen 116 RPLGIRFDKKGGDLYVA----------DAYLGLLKVGPEGGLAELLADEAEGKPFKFLNDLDIDPEGV-VYFTDSSSKYD 184 (376)
T ss_pred CcceEEeccCCCeEEEE----------ecceeeEEECCCCCcceeccccccCeeeeecCceeEcCCCe-EEEeccccccc
Confidence 55667888888766443 55578999999999988887543321111123667778554 67763211110
Q ss_pred CCCCCCCCCCCceeecCCCcccccccch-hccCCchhhhhhhhcccceEEEEccCC-CceecCCC-ceEeeeeeCCCCcE
Q 005240 112 PPKKTMVPLGPKIQSNEQKNIIISRMTD-NLLKDEYDESLFDYYTTAQLVLGSLDG-TAKDFGTP-AVYTAVEPSPDQKY 188 (706)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~l~~~~l~g-~~~~lt~~-~~~~~~~~SpDG~~ 188 (706)
.+.+- ..+ .....++|+.+|... ..+.|.++ .....++.|||+..
T Consensus 185 -----------------------~rd~~~a~l---------~g~~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sf 232 (376)
T KOG1520|consen 185 -----------------------RRDFVFAAL---------EGDPTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSF 232 (376)
T ss_pred -----------------------hhheEEeee---------cCCCccceEEecCcccchhhhhhcccccccccCCCCCCE
Confidence 00000 000 011347899999854 56666665 56678999999999
Q ss_pred EEEEeeccCcccccccccccceEEEEecCCCee---EEcccCCCCCCCCcccCccCCCCcceeeecCCCceEE
Q 005240 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV---RELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLY 258 (706)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~ 258 (706)
++|..+.. .+|..|=+.+.+. ..+.. +.| ..+.+|..+++|..+++
T Consensus 233 vl~~Et~~------------~ri~rywi~g~k~gt~EvFa~-----~LP-------G~PDNIR~~~~G~fWVa 281 (376)
T KOG1520|consen 233 VLVAETTT------------ARIKRYWIKGPKAGTSEVFAE-----GLP-------GYPDNIRRDSTGHFWVA 281 (376)
T ss_pred EEEEeecc------------ceeeeeEecCCccCchhhHhh-----cCC-------CCCcceeECCCCCEEEE
Confidence 99987763 4666666665543 22222 111 22446777888875333
|
|
| >PF11187 DUF2974: Protein of unknown function (DUF2974); InterPro: IPR024499 This family of proteins has no known function | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.097 Score=50.49 Aligned_cols=49 Identities=20% Similarity=0.211 Sum_probs=35.1
Q ss_pred HHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCC----CceeEEEeccC
Q 005240 587 EAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAP----HLFCCGIARSG 635 (706)
Q Consensus 587 ~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p----~~~~a~v~~~~ 635 (706)
..|++|+.+.-.-.+.+|.+.|||.||.+|.++++..+ +++..+.++.|
T Consensus 69 ~~A~~yl~~~~~~~~~~i~v~GHSkGGnLA~yaa~~~~~~~~~rI~~vy~fDg 121 (224)
T PF11187_consen 69 KSALAYLKKIAKKYPGKIYVTGHSKGGNLAQYAAANCDDEIQDRISKVYSFDG 121 (224)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEechhhHHHHHHHHHccHHHhhheeEEEEeeC
Confidence 35667776542222456999999999999999998842 46777776664
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=93.87 E-value=3 Score=42.20 Aligned_cols=118 Identities=15% Similarity=0.202 Sum_probs=70.2
Q ss_pred ceEEEEcc-CC-CceecCCCceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCC--e-eE-EcccCCCC
Q 005240 157 AQLVLGSL-DG-TAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK--L-VR-ELCDLPPA 230 (706)
Q Consensus 157 ~~l~~~~l-~g-~~~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~-~~-~l~~~~~~ 230 (706)
..|.++|+ .| ....++.+.....+..+|..+.|+-.+.. ..|.+||...+ . ++ ++..+.
T Consensus 281 HTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssd-------------r~irl~DPR~~~gs~v~~s~~gH~-- 345 (423)
T KOG0313|consen 281 HTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSD-------------RHIRLWDPRTGDGSVVSQSLIGHK-- 345 (423)
T ss_pred ceEEEEEeecccceeeeecCcceeEeecccccceeeecCCC-------------CceeecCCCCCCCceeEEeeecch--
Confidence 57888898 55 55566666677789999998888765544 37899998732 2 22 222221
Q ss_pred CCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCC-CceEEeecccccccceecCC
Q 005240 231 EDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGE-KPEILHKLDLRFRSVSWCDD 309 (706)
Q Consensus 231 ~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~~~~l~~~~~~~~~~~wspD 309 (706)
+.+..+.|+|....+++ -...+ +.+.+||+. ... .+-.|..+...+..+.|..
T Consensus 346 -----------nwVssvkwsp~~~~~~~-S~S~D-----------~t~klWDvR--S~k~plydI~~h~DKvl~vdW~~- 399 (423)
T KOG0313|consen 346 -----------NWVSSVKWSPTNEFQLV-SGSYD-----------NTVKLWDVR--STKAPLYDIAGHNDKVLSVDWNE- 399 (423)
T ss_pred -----------hhhhheecCCCCceEEE-EEecC-----------CeEEEEEec--cCCCcceeeccCCceEEEEeccC-
Confidence 12447789998876232 21111 246677773 222 2344555666777777754
Q ss_pred CceEEE
Q 005240 310 SLALVN 315 (706)
Q Consensus 310 g~~l~~ 315 (706)
+..|+.
T Consensus 400 ~~~IvS 405 (423)
T KOG0313|consen 400 GGLIVS 405 (423)
T ss_pred CceEEe
Confidence 334443
|
|
| >KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures] | Back alignment and domain information |
|---|
Probab=93.76 E-value=4.9 Score=44.88 Aligned_cols=137 Identities=19% Similarity=0.168 Sum_probs=79.9
Q ss_pred eEEEEccCC-CceecCCC--ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCC
Q 005240 158 QLVLGSLDG-TAKDFGTP--AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIP 234 (706)
Q Consensus 158 ~l~~~~l~g-~~~~lt~~--~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p 234 (706)
.|-+..|.| +++.+... .....+++.--++-++++... -.+|.+..++|+..+.|.....
T Consensus 1048 SI~rasL~G~Ep~ti~n~~L~SPEGiAVDh~~Rn~ywtDS~------------lD~IevA~LdG~~rkvLf~tdL----- 1110 (1289)
T KOG1214|consen 1048 SISRASLEGAEPETIVNSGLISPEGIAVDHIRRNMYWTDSV------------LDKIEVALLDGSERKVLFYTDL----- 1110 (1289)
T ss_pred ccccccccCCCCceeecccCCCccceeeeeccceeeeeccc------------cchhheeecCCceeeEEEeecc-----
Confidence 344445555 55555433 233344444445556655433 2478888999998887765543
Q ss_pred cccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecc-cccccceecCCCceE
Q 005240 235 VCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLD-LRFRSVSWCDDSLAL 313 (706)
Q Consensus 235 ~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~-~~~~~~~wspDg~~l 313 (706)
..++.+...+-+.. |||.. ..... ..|-..+. +|...+.|...+ +....+.|.|..+.|
T Consensus 1111 -------VNPR~iv~D~~rgn-LYwtD-WnRen--------PkIets~m---DG~NrRilin~DigLPNGLtfdpfs~~L 1170 (1289)
T KOG1214|consen 1111 -------VNPRAIVVDPIRGN-LYWTD-WNREN--------PKIETSSM---DGENRRILINTDIGLPNGLTFDPFSKLL 1170 (1289)
T ss_pred -------cCcceEEeecccCc-eeecc-ccccC--------Ccceeecc---CCccceEEeecccCCCCCceeCccccee
Confidence 12556677776666 88762 11111 12444454 666666665543 455678888888888
Q ss_pred EEEeeccccceEEEEEcCCCC
Q 005240 314 VNETWYKTSQTRTWLVCPGSK 334 (706)
Q Consensus 314 ~~~~~~~~~~~~l~~~d~~~~ 334 (706)
-|.. .+..+|--+..++.
T Consensus 1171 CWvD---AGt~rleC~~p~g~ 1188 (1289)
T KOG1214|consen 1171 CWVD---AGTKRLECTLPDGT 1188 (1289)
T ss_pred eEEe---cCCcceeEecCCCC
Confidence 7753 35666776766664
|
|
| >KOG2565 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.28 Score=49.42 Aligned_cols=114 Identities=16% Similarity=0.142 Sum_probs=70.2
Q ss_pred CCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHC---C------eEEEEc
Q 005240 491 DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLAR---R------FAVLAG 561 (706)
Q Consensus 491 dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---G------~~v~~~ 561 (706)
.|..|+-.-..|+.-+ .++..+|+++ +||=| +.-..++.+.-+|..- | |-|++|
T Consensus 132 eGL~iHFlhvk~p~~k-~~k~v~PlLl-~HGwP---------------Gsv~EFykfIPlLT~p~~hg~~~d~~FEVI~P 194 (469)
T KOG2565|consen 132 EGLKIHFLHVKPPQKK-KKKKVKPLLL-LHGWP---------------GSVREFYKFIPLLTDPKRHGNESDYAFEVIAP 194 (469)
T ss_pred cceeEEEEEecCCccc-cCCcccceEE-ecCCC---------------chHHHHHhhhhhhcCccccCCccceeEEEecc
Confidence 5889999888888743 3345678655 78743 1111233444555543 4 566764
Q ss_pred CCCCcCCCCCCCCc--hhhHHHHHHHHHHHH-HHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEE
Q 005240 562 PSIPIIGEGDKLPN--DRFVEQLVSSAEAAV-EEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCG 630 (706)
Q Consensus 562 ~~~~~~g~g~~~~~--~~~~~~~~~D~~~~~-~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~ 630 (706)
.- .|||.+... ..+...... .++ +-+...++ ++-.|-|+-+|..++..++..+|+.+.+.
T Consensus 195 Sl---PGygwSd~~sk~GFn~~a~A---rvmrkLMlRLg~---nkffiqGgDwGSiI~snlasLyPenV~Gl 257 (469)
T KOG2565|consen 195 SL---PGYGWSDAPSKTGFNAAATA---RVMRKLMLRLGY---NKFFIQGGDWGSIIGSNLASLYPENVLGL 257 (469)
T ss_pred CC---CCcccCcCCccCCccHHHHH---HHHHHHHHHhCc---ceeEeecCchHHHHHHHHHhhcchhhhHh
Confidence 33 256655443 223222222 222 23344455 78999999999999999999999977654
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.59 E-value=7.3 Score=38.43 Aligned_cols=167 Identities=13% Similarity=0.165 Sum_probs=86.7
Q ss_pred cccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCCC
Q 005240 88 VFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGT 167 (706)
Q Consensus 88 ~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g~ 167 (706)
.++++.|+||.+.|+.+.+. ..+|..++.+|+
T Consensus 87 nvS~LTynp~~rtLFav~n~------------------------------------------------p~~iVElt~~Gd 118 (316)
T COG3204 87 NVSSLTYNPDTRTLFAVTNK------------------------------------------------PAAIVELTKEGD 118 (316)
T ss_pred cccceeeCCCcceEEEecCC------------------------------------------------CceEEEEecCCc
Confidence 38899999999998877431 156777788883
Q ss_pred -ceec--CCCceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCC-eeEEccc--CCCCCCCCcccCccC
Q 005240 168 -AKDF--GTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK-LVRELCD--LPPAEDIPVCYNSVR 241 (706)
Q Consensus 168 -~~~l--t~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~--~~~~~~~p~~~~~~~ 241 (706)
.+.+ +...+...++|.-+|++++.-... ..++++.++.. .+..+.. .+... .+...
T Consensus 119 lirtiPL~g~~DpE~Ieyig~n~fvi~dER~-------------~~l~~~~vd~~t~~~~~~~~~i~L~~-----~~k~N 180 (316)
T COG3204 119 LIRTIPLTGFSDPETIEYIGGNQFVIVDERD-------------RALYLFTVDADTTVISAKVQKIPLGT-----TNKKN 180 (316)
T ss_pred eEEEecccccCChhHeEEecCCEEEEEehhc-------------ceEEEEEEcCCccEEeccceEEeccc-----cCCCC
Confidence 3333 333667788898888776533222 35666655522 1111111 01000 00111
Q ss_pred CCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCC--CC---CCCceEEee-cccccccceecCCCceEEE
Q 005240 242 EGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEP--AE---GEKPEILHK-LDLRFRSVSWCDDSLALVN 315 (706)
Q Consensus 242 ~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~--~~---~~~~~~l~~-~~~~~~~~~wspDg~~l~~ 315 (706)
.|-..++|.|.... |++....+. -.||.++..+ +. ...++.... .-..++.+.+.+....|++
T Consensus 181 ~GfEGlA~d~~~~~-l~~aKEr~P----------~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLV 249 (316)
T COG3204 181 KGFEGLAWDPVDHR-LFVAKERNP----------IGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLV 249 (316)
T ss_pred cCceeeecCCCCce-EEEEEccCC----------cEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEE
Confidence 34447899999987 766643221 1355554311 00 000110000 0123556667666545555
Q ss_pred EeeccccceEEEEEcCCCC
Q 005240 316 ETWYKTSQTRTWLVCPGSK 334 (706)
Q Consensus 316 ~~~~~~~~~~l~~~d~~~~ 334 (706)
.+.+ ...|..+|.++.
T Consensus 250 LS~E---Sr~l~Evd~~G~ 265 (316)
T COG3204 250 LSDE---SRRLLEVDLSGE 265 (316)
T ss_pred EecC---CceEEEEecCCC
Confidence 4422 345777887763
|
|
| >PRK13614 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=93.48 E-value=4.4 Score=44.85 Aligned_cols=146 Identities=14% Similarity=0.139 Sum_probs=77.7
Q ss_pred ceEEEEccCCCceecCCCceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCC-eeEEcccCCCCCCCCc
Q 005240 157 AQLVLGSLDGTAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK-LVRELCDLPPAEDIPV 235 (706)
Q Consensus 157 ~~l~~~~l~g~~~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~~~~~p~ 235 (706)
..|+.....+..+.+..+.....++|+++| +|+...... ...+.++.-++. ........ ..
T Consensus 365 ~~l~~~~~g~~~~~~~~g~~Lt~PS~d~~g-~vWtv~~g~-----------~~~vv~~~~~g~~~~~~~~~~------~v 426 (573)
T PRK13614 365 TTLYTVSPGQPARALTSGSTLTRPSFSPQD-WVWTAGPGG-----------NGRIVAYRPTGVAEGAQAPTV------TL 426 (573)
T ss_pred cEEEEecCCCcceeeecCCCccCCcccCCC-CEEEeeCCC-----------CceEEEEecCCCcccccccce------ee
Confidence 367766664555555555567789999998 776444322 124555443322 11000000 00
Q ss_pred ccCccCCC-CcceeeecCCCceEEEEEeccCCCCccccCccceeee--ecCCCCCCCCceEEeec-----ccccccceec
Q 005240 236 CYNSVREG-MRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYT--QPAEPAEGEKPEILHKL-----DLRFRSVSWC 307 (706)
Q Consensus 236 ~~~~~~~g-~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~--~d~~~~~~~~~~~l~~~-----~~~~~~~~ws 307 (706)
...+.... +..+..|+||-+ ++++...++... |++ +-.+ ..|.++.|+.. .....++.|.
T Consensus 427 ~~~~l~g~~I~~lrvSrDG~R-~Avi~~~~g~~~---------V~va~V~R~--~~G~P~~L~~~~~~~~~~~~~sl~W~ 494 (573)
T PRK13614 427 TADWLAGRTVKELRVSREGVR-ALVISEQNGKSR---------VQVAGIVRN--EDGTPRELTAPITLAADSDADTGAWV 494 (573)
T ss_pred cccccCCCeeEEEEECCCccE-EEEEEEeCCccE---------EEEEEEEeC--CCCCeEEccCceecccCCCcceeEEc
Confidence 00011111 447899999998 666653333221 333 2221 34566666532 2466788999
Q ss_pred CCCceEEEEeeccccceEEEEEcCCC
Q 005240 308 DDSLALVNETWYKTSQTRTWLVCPGS 333 (706)
Q Consensus 308 pDg~~l~~~~~~~~~~~~l~~~d~~~ 333 (706)
.++..++... ..+....++++.+++
T Consensus 495 ~~~sl~V~~~-~~~~~~~~~~v~v~~ 519 (573)
T PRK13614 495 GDSTVVVTKA-SATSNVVPELLSVDA 519 (573)
T ss_pred CCCEEEEEec-cCCCcceEEEEEeCC
Confidence 9988666553 233455677777755
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.45 E-value=5.3 Score=42.71 Aligned_cols=86 Identities=20% Similarity=0.161 Sum_probs=43.2
Q ss_pred eeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCcccccccCCC--
Q 005240 277 IIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPG-- 354 (706)
Q Consensus 277 ~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~-- 354 (706)
.||+++++ .|.=++.+....+.+..+...+-...|++.. ..+.+-.+|...... ...| +.. ..+.+.|+
T Consensus 156 evYRlNLE--qGrfL~P~~~~~~~lN~v~in~~hgLla~Gt----~~g~VEfwDpR~ksr-v~~l-~~~-~~v~s~pg~~ 226 (703)
T KOG2321|consen 156 EVYRLNLE--QGRFLNPFETDSGELNVVSINEEHGLLACGT----EDGVVEFWDPRDKSR-VGTL-DAA-SSVNSHPGGD 226 (703)
T ss_pred ceEEEEcc--ccccccccccccccceeeeecCccceEEecc----cCceEEEecchhhhh-heee-ecc-cccCCCcccc
Confidence 48888883 3333344444456666667777666666543 223455566655321 1111 111 11222332
Q ss_pred ----CCceEeccCCCEEEEee
Q 005240 355 ----SPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 355 ----~~~~~~s~dg~~l~~~~ 371 (706)
...+.|+.||-.+++..
T Consensus 227 ~~~svTal~F~d~gL~~aVGt 247 (703)
T KOG2321|consen 227 AAPSVTALKFRDDGLHVAVGT 247 (703)
T ss_pred ccCcceEEEecCCceeEEeec
Confidence 33566777887776654
|
|
| >KOG3253 consensus Predicted alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.39 E-value=1.4 Score=47.34 Aligned_cols=91 Identities=15% Similarity=0.113 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHc--CCCCCCcEEEEEechHHHHHHHHHHhCCC-ceeEEEeccCCCCCCCC--------------Ccc
Q 005240 583 VSSAEAAVEEVVRR--GVADPSRIAVGGHSYGAFMTAHLLAHAPH-LFCCGIARSGSYNKTLT--------------PFG 645 (706)
Q Consensus 583 ~~D~~~~~~~l~~~--~~id~~~i~i~G~S~GG~~a~~~~~~~p~-~~~a~v~~~~~~d~~~~--------------~~~ 645 (706)
.+-.+.+.++...+ +..--..|.++|+|||..++.++...+.| .+.|+|++.=.++...- |..
T Consensus 229 ae~~vSf~r~kvlei~gefpha~IiLvGrsmGAlVachVSpsnsdv~V~~vVCigypl~~vdgprgirDE~Lldmk~PVL 308 (784)
T KOG3253|consen 229 AEYSVSFDRYKVLEITGEFPHAPIILVGRSMGALVACHVSPSNSDVEVDAVVCIGYPLDTVDGPRGIRDEALLDMKQPVL 308 (784)
T ss_pred HHHHHHHhhhhhhhhhccCCCCceEEEecccCceeeEEeccccCCceEEEEEEecccccCCCcccCCcchhhHhcCCceE
Confidence 34444444443322 22223589999999998888887766644 36777776543332221 211
Q ss_pred c------------hHHHHHHHHHhCCCcEEEEEeCCCCccCCC
Q 005240 646 F------------QAERFFDALKGHGALSRLVLLPFEHHVYAA 676 (706)
Q Consensus 646 ~------------~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~ 676 (706)
| ..|++.+++++ ++++++..+++|.+.-
T Consensus 309 FV~Gsnd~mcspn~ME~vreKMqA---~~elhVI~~adhsmai 348 (784)
T KOG3253|consen 309 FVIGSNDHMCSPNSMEEVREKMQA---EVELHVIGGADHSMAI 348 (784)
T ss_pred EEecCCcccCCHHHHHHHHHHhhc---cceEEEecCCCccccC
Confidence 1 11255555544 6789999999999864
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.35 E-value=12 Score=41.33 Aligned_cols=62 Identities=16% Similarity=0.354 Sum_probs=33.8
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEe
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTI 105 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~ 105 (706)
.+..++|...-++|..+.+ +|--=+|.+= ++.=....++.-. ...+.+..|..||.+|...-
T Consensus 73 sV~vvTWNe~~QKLTtSDt--------~GlIiVWmly-kgsW~EEMiNnRn---KSvV~SmsWn~dG~kIcIvY 134 (1189)
T KOG2041|consen 73 SVMVVTWNENNQKLTTSDT--------SGLIIVWMLY-KGSWCEEMINNRN---KSVVVSMSWNLDGTKICIVY 134 (1189)
T ss_pred eEEEEEeccccccccccCC--------CceEEEEeee-cccHHHHHhhCcC---ccEEEEEEEcCCCcEEEEEE
Confidence 5667788887777744311 3434444442 2221222221111 12367899999999877653
|
|
| >PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like | Back alignment and domain information |
|---|
Probab=93.17 E-value=0.4 Score=46.80 Aligned_cols=54 Identities=17% Similarity=0.146 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHh----CC-----CceeEEEeccCCCC
Q 005240 583 VSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAH----AP-----HLFCCGIARSGSYN 638 (706)
Q Consensus 583 ~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~----~p-----~~~~a~v~~~~~~d 638 (706)
..++...++.|.+. ....+|-|++||||+.+.+.++.. .+ .+|.-++..+|-++
T Consensus 76 ~~~l~~~L~~L~~~--~~~~~I~ilaHSMG~rv~~~aL~~l~~~~~~~~~~~~~~~viL~ApDid 138 (233)
T PF05990_consen 76 GPALARFLRDLARA--PGIKRIHILAHSMGNRVLLEALRQLASEGERPDVKARFDNVILAAPDID 138 (233)
T ss_pred HHHHHHHHHHHHhc--cCCceEEEEEeCchHHHHHHHHHHHHhcccchhhHhhhheEEEECCCCC
Confidence 44455555555554 235799999999999998877633 21 26778888888665
|
|
| >COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=93.15 E-value=0.34 Score=49.98 Aligned_cols=88 Identities=11% Similarity=0.013 Sum_probs=59.5
Q ss_pred hHHHHHHHCCeEEEEcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCC
Q 005240 546 TSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH 625 (706)
Q Consensus 546 ~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~ 625 (706)
.+...++++|..|+..+-+ +..++.. ...+-+-+.+++..+++.+.+.-. .++|-+.|+|.||.++..+++..+.
T Consensus 130 s~V~~l~~~g~~vfvIsw~-nPd~~~~--~~~~edYi~e~l~~aid~v~~itg--~~~InliGyCvGGtl~~~ala~~~~ 204 (445)
T COG3243 130 SLVRWLLEQGLDVFVISWR-NPDASLA--AKNLEDYILEGLSEAIDTVKDITG--QKDINLIGYCVGGTLLAAALALMAA 204 (445)
T ss_pred cHHHHHHHcCCceEEEecc-CchHhhh--hccHHHHHHHHHHHHHHHHHHHhC--ccccceeeEecchHHHHHHHHhhhh
Confidence 4567788999999873332 1112111 222222233777788888877632 3689999999999999999988877
Q ss_pred c-eeEEEeccCCCC
Q 005240 626 L-FCCGIARSGSYN 638 (706)
Q Consensus 626 ~-~~a~v~~~~~~d 638 (706)
+ ++.+..+....|
T Consensus 205 k~I~S~T~lts~~D 218 (445)
T COG3243 205 KRIKSLTLLTSPVD 218 (445)
T ss_pred cccccceeeecchh
Confidence 7 777777766555
|
|
| >KOG2551 consensus Phospholipase/carboxyhydrolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.12 E-value=0.58 Score=43.93 Aligned_cols=100 Identities=20% Similarity=0.209 Sum_probs=65.5
Q ss_pred HHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhC--C----C--ceeEEEeccCCCCCC--C----------CCcc
Q 005240 586 AEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHA--P----H--LFCCGIARSGSYNKT--L----------TPFG 645 (706)
Q Consensus 586 ~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~--p----~--~~~a~v~~~~~~d~~--~----------~~~~ 645 (706)
+....+|+.+++.-| ||.|+|.|+.|+.++++.. + . .|+-+|..+|..-+. + +|..
T Consensus 92 l~yl~~~i~enGPFD----GllGFSQGA~laa~l~~~~~~~~~~~~~P~~kF~v~~SGf~~~~~~~~~~~~~~~i~~PSL 167 (230)
T KOG2551|consen 92 LEYLEDYIKENGPFD----GLLGFSQGAALAALLAGLGQKGLPYVKQPPFKFAVFISGFKFPSKKLDESAYKRPLSTPSL 167 (230)
T ss_pred HHHHHHHHHHhCCCc----cccccchhHHHHHHhhcccccCCcccCCCCeEEEEEEecCCCCcchhhhhhhccCCCCCee
Confidence 556677888887777 8999999999999998722 1 1 478888888865431 0 1211
Q ss_pred -c-----------hHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHhcc
Q 005240 646 -F-----------QAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCLS 697 (706)
Q Consensus 646 -~-----------~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~~~~l~~ 697 (706)
. .++.|++.+... ..+.-|| +|.+-+. ....+.+.+||+..+..
T Consensus 168 Hi~G~~D~iv~~~~s~~L~~~~~~a----~vl~Hpg-gH~VP~~---~~~~~~i~~fi~~~~~~ 223 (230)
T KOG2551|consen 168 HIFGETDTIVPSERSEQLAESFKDA----TVLEHPG-GHIVPNK---AKYKEKIADFIQSFLQE 223 (230)
T ss_pred EEecccceeecchHHHHHHHhcCCC----eEEecCC-CccCCCc---hHHHHHHHHHHHHHHHh
Confidence 0 123555555443 5566665 8988643 25677888888886653
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.08 E-value=3.4 Score=42.89 Aligned_cols=57 Identities=11% Similarity=0.247 Sum_probs=38.1
Q ss_pred CceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCC
Q 005240 174 PAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADK 253 (706)
Q Consensus 174 ~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg 253 (706)
++.+.+++-+|+|.+|+..... .+||+|.+.++..-.+...... .+.-+.||-||
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~-------------g~lYlWelssG~LL~v~~aHYQ------------~ITcL~fs~dg 135 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTIS-------------GNLYLWELSSGILLNVLSAHYQ------------SITCLKFSDDG 135 (476)
T ss_pred ccceeeeecCCCceEEEeeccc-------------CcEEEEEeccccHHHHHHhhcc------------ceeEEEEeCCC
Confidence 3678899999999988754333 4899999998865433322211 12356788888
Q ss_pred Cc
Q 005240 254 PS 255 (706)
Q Consensus 254 ~~ 255 (706)
..
T Consensus 136 s~ 137 (476)
T KOG0646|consen 136 SH 137 (476)
T ss_pred cE
Confidence 74
|
|
| >PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides [] | Back alignment and domain information |
|---|
Probab=92.92 E-value=0.25 Score=43.77 Aligned_cols=53 Identities=21% Similarity=0.214 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhC-------CCceeEEEeccC
Q 005240 581 QLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHA-------PHLFCCGIARSG 635 (706)
Q Consensus 581 ~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~-------p~~~~a~v~~~~ 635 (706)
.....+...++.+.++.. +.+|.+.|||+||.+|..++... +..+++..-.+|
T Consensus 45 ~~~~~~~~~l~~~~~~~~--~~~i~itGHSLGGalA~l~a~~l~~~~~~~~~~~~~~~fg~P 104 (140)
T PF01764_consen 45 SLYDQILDALKELVEKYP--DYSIVITGHSLGGALASLAAADLASHGPSSSSNVKCYTFGAP 104 (140)
T ss_dssp HHHHHHHHHHHHHHHHST--TSEEEEEEETHHHHHHHHHHHHHHHCTTTSTTTEEEEEES-S
T ss_pred HHHHHHHHHHHHHHhccc--CccchhhccchHHHHHHHHHHhhhhcccccccceeeeecCCc
Confidence 344555666666655543 47999999999999998888652 134555555444
|
Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A .... |
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=92.80 E-value=5.3 Score=41.38 Aligned_cols=82 Identities=15% Similarity=0.016 Sum_probs=39.7
Q ss_pred CcceeeecCCCceEEEEEeccCCC--CccccCccceeeeecCCCCCCC-------------CceEEeecccccccceecC
Q 005240 244 MRSISWRADKPSTLYWVEAQDRGD--ANVEVSPRDIIYTQPAEPAEGE-------------KPEILHKLDLRFRSVSWCD 308 (706)
Q Consensus 244 ~~~~~~spdg~~~l~~~~~~~~~~--~~~~~~~~~~l~~~d~~~~~~~-------------~~~~l~~~~~~~~~~~wsp 308 (706)
...+.|.|||. ||+..-..... .......++.|.+++. ++. ..+.....-.....++|.|
T Consensus 116 g~~l~fgpDG~--LYvs~G~~~~~~~~~~~~~~~G~ilri~~---dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~ 190 (331)
T PF07995_consen 116 GGGLAFGPDGK--LYVSVGDGGNDDNAQDPNSLRGKILRIDP---DGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDP 190 (331)
T ss_dssp EEEEEE-TTSE--EEEEEB-TTTGGGGCSTTSSTTEEEEEET---TSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEET
T ss_pred CccccCCCCCc--EEEEeCCCCCcccccccccccceEEEecc---cCcCCCCCccccCCCceEEEEEeCCCccccEEEEC
Confidence 34789999993 77654322221 1112234567888887 332 2223333445556778888
Q ss_pred CCceEEEEeeccccceEEEEEc
Q 005240 309 DSLALVNETWYKTSQTRTWLVC 330 (706)
Q Consensus 309 Dg~~l~~~~~~~~~~~~l~~~d 330 (706)
....|+...........|.++.
T Consensus 191 ~tg~l~~~d~G~~~~dein~i~ 212 (331)
T PF07995_consen 191 NTGRLWAADNGPDGWDEINRIE 212 (331)
T ss_dssp TTTEEEEEEE-SSSSEEEEEE-
T ss_pred CCCcEEEEccCCCCCcEEEEec
Confidence 8333443333333344555554
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.70 E-value=6.5 Score=40.92 Aligned_cols=59 Identities=7% Similarity=0.077 Sum_probs=42.6
Q ss_pred ccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEe
Q 005240 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTI 105 (706)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~ 105 (706)
+...+-+|+|.+|+-. .-..+||++.+.+|+...+..... ..+..+.+|.||+.|+..+
T Consensus 84 v~al~s~n~G~~l~ag----------~i~g~lYlWelssG~LL~v~~aHY----Q~ITcL~fs~dgs~iiTgs 142 (476)
T KOG0646|consen 84 VHALASSNLGYFLLAG----------TISGNLYLWELSSGILLNVLSAHY----QSITCLKFSDDGSHIITGS 142 (476)
T ss_pred eeeeecCCCceEEEee----------cccCcEEEEEeccccHHHHHHhhc----cceeEEEEeCCCcEEEecC
Confidence 6778889999988653 245789999999998665542211 1266789999999877654
|
|
| >cd00741 Lipase Lipase | Back alignment and domain information |
|---|
Probab=92.69 E-value=0.39 Score=43.45 Aligned_cols=52 Identities=13% Similarity=0.063 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCC----ceeEEEeccC
Q 005240 582 LVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH----LFCCGIARSG 635 (706)
Q Consensus 582 ~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~----~~~a~v~~~~ 635 (706)
....+...++...++ -...+|.++|||+||.+|..++.+... ....++++++
T Consensus 10 ~~~~i~~~~~~~~~~--~p~~~i~v~GHSlGg~lA~l~a~~~~~~~~~~~~~~~~fg~ 65 (153)
T cd00741 10 LANLVLPLLKSALAQ--YPDYKIHVTGHSLGGALAGLAGLDLRGRGLGRLVRVYTFGP 65 (153)
T ss_pred HHHHHHHHHHHHHHH--CCCCeEEEEEcCHHHHHHHHHHHHHHhccCCCceEEEEeCC
Confidence 344444555444433 134799999999999999998877643 3344455544
|
Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site. |
| >PF06028 DUF915: Alpha/beta hydrolase of unknown function (DUF915); InterPro: IPR010315 This family consists of bacterial proteins of unknown function, which are hydrolase-like | Back alignment and domain information |
|---|
Probab=92.61 E-value=0.36 Score=47.53 Aligned_cols=60 Identities=12% Similarity=0.132 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCC-----ceeEEEeccCCCCCC
Q 005240 579 VEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH-----LFCCGIARSGSYNKT 640 (706)
Q Consensus 579 ~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~-----~~~a~v~~~~~~d~~ 640 (706)
......=+..++.+|.++.-+ +++-+.||||||..+...+..+.. .+.-.|+.++.++..
T Consensus 82 ~~~qa~wl~~vl~~L~~~Y~~--~~~N~VGHSmGg~~~~~yl~~~~~~~~~P~l~K~V~Ia~pfng~ 146 (255)
T PF06028_consen 82 YKKQAKWLKKVLKYLKKKYHF--KKFNLVGHSMGGLSWTYYLENYGNDKNLPKLNKLVTIAGPFNGI 146 (255)
T ss_dssp HHHHHHHHHHHHHHHHHCC----SEEEEEEETHHHHHHHHHHHHCTTGTTS-EEEEEEEES--TTTT
T ss_pred HHHHHHHHHHHHHHHHHhcCC--CEEeEEEECccHHHHHHHHHHhccCCCCcccceEEEeccccCcc
Confidence 344455677888999888655 689999999999999999988632 478888888877643
|
; PDB: 3LP5_A 3FLE_A 3DS8_A. |
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.46 E-value=0.85 Score=50.81 Aligned_cols=103 Identities=18% Similarity=0.233 Sum_probs=67.0
Q ss_pred EeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCce
Q 005240 177 YTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPST 256 (706)
Q Consensus 177 ~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~ 256 (706)
....++||.+++++.....+ +|.+|.--+..-. ......++|..+.+..++||+||..
T Consensus 208 ~t~~~~spn~~~~Aa~d~dG-------------rI~vw~d~~~~~~--------~~t~t~lHWH~~~V~~L~fS~~G~~- 265 (792)
T KOG1963|consen 208 ITCVALSPNERYLAAGDSDG-------------RILVWRDFGSSDD--------SETCTLLHWHHDEVNSLSFSSDGAY- 265 (792)
T ss_pred ceeEEeccccceEEEeccCC-------------cEEEEeccccccc--------cccceEEEecccccceeEEecCCce-
Confidence 46788999999998655442 5777765442100 0111222232233557899999987
Q ss_pred EEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEE
Q 005240 257 LYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNE 316 (706)
Q Consensus 257 l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~ 316 (706)
|+ .+|.+. .+.+|.+ ++++.+-|+.....+..+.||||+......
T Consensus 266 Ll-----SGG~E~-------VLv~Wq~---~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~ 310 (792)
T KOG1963|consen 266 LL-----SGGREG-------VLVLWQL---ETGKKQFLPRLGSPILHIVVSPDSDLYSLV 310 (792)
T ss_pred Ee-----ecccce-------EEEEEee---cCCCcccccccCCeeEEEEEcCCCCeEEEE
Confidence 54 344443 3667777 777877788888999999999999866554
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.41 E-value=15 Score=38.16 Aligned_cols=57 Identities=19% Similarity=0.262 Sum_probs=39.6
Q ss_pred cceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeeccc-CCCccccccccceEEecCCc-EEEEE
Q 005240 34 NFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFE-SPDICLNAVFGSFVWVNNST-LLIFT 104 (706)
Q Consensus 34 ~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~-~~~~~~~~~~~~~~wSpDg~-~l~~~ 104 (706)
-...|.-.-+.|.++. .....|-++|+++|++.+... ... .+..+.|.|.-- .|+..
T Consensus 247 l~Ls~n~~~~nVLaSg---------saD~TV~lWD~~~g~p~~s~~~~~k-----~Vq~l~wh~~~p~~LLsG 305 (463)
T KOG0270|consen 247 LALSWNRNFRNVLASG---------SADKTVKLWDVDTGKPKSSITHHGK-----KVQTLEWHPYEPSVLLSG 305 (463)
T ss_pred HHHHhccccceeEEec---------CCCceEEEEEcCCCCcceehhhcCC-----ceeEEEecCCCceEEEec
Confidence 3567887888887765 334678888999999887654 333 288999998654 44433
|
|
| >PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4 | Back alignment and domain information |
|---|
Probab=92.11 E-value=1.5 Score=35.13 Aligned_cols=52 Identities=19% Similarity=0.221 Sum_probs=38.2
Q ss_pred ccceEEEEcc-CCCceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCC
Q 005240 155 TTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG 218 (706)
Q Consensus 155 ~~~~l~~~~l-~g~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 218 (706)
..++|+.+|. +++.+.|..+ .....+++|||++.|++..... .+|..+-+.|
T Consensus 35 ~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~~------------~Ri~rywl~G 88 (89)
T PF03088_consen 35 PTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETGR------------YRILRYWLKG 88 (89)
T ss_dssp --EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGGG------------TEEEEEESSS
T ss_pred CCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEeccC------------ceEEEEEEeC
Confidence 5589999999 5577777766 6778999999999999887653 4666665543
|
3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B. |
| >COG1073 Hydrolases of the alpha/beta superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.10 E-value=0.71 Score=46.69 Aligned_cols=44 Identities=11% Similarity=0.225 Sum_probs=33.1
Q ss_pred HHHHHHHhCCCcEEEEEeCCCCccCCCcccH--HHHHHHHHHHHHHHh
Q 005240 650 RFFDALKGHGALSRLVLLPFEHHVYAARENV--MHVIWETDRWLQKYC 695 (706)
Q Consensus 650 ~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~--~~~~~~~~~f~~~~l 695 (706)
+++.+.... +.+.+++++..|........ .+.+..+.+||.+++
T Consensus 253 ~~~~~~~~~--~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~f~~~~l 298 (299)
T COG1073 253 DLYEAARER--PKKLLFVPGGGHIDLYDNPPAVEQALDKLAEFLERHL 298 (299)
T ss_pred HHHhhhccC--CceEEEecCCccccccCccHHHHHHHHHHHHHHHHhc
Confidence 555555544 67889999999998753333 489999999999976
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=92.04 E-value=12 Score=40.54 Aligned_cols=143 Identities=15% Similarity=0.039 Sum_probs=80.1
Q ss_pred ceEEEEccCC-CceecCCC---ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCC
Q 005240 157 AQLVLGSLDG-TAKDFGTP---AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAED 232 (706)
Q Consensus 157 ~~l~~~~l~g-~~~~lt~~---~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~ 232 (706)
..|.++..+| +...|..- .+.-.+.||-...+.+++-...-.. .....-+-.+|++..++++++.-....-.
T Consensus 184 aNl~L~~~~~~klEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~----~g~~~~d~ciYE~~r~klqrvsvtsipL~ 259 (545)
T PF11768_consen 184 ANLHLLSCSGGKLEVLSYIRTENDPLDVEFSLNQPYQIHTVEQSISV----KGEPSADSCIYECSRNKLQRVSVTSIPLP 259 (545)
T ss_pred ccEEEEEecCCcEEEEEEEEecCCcEEEEccCCCCcEEEEEEEecCC----CCCceeEEEEEEeecCceeEEEEEEEecC
Confidence 5777778766 66655432 3556777887444444443332100 01113456677777666665533221111
Q ss_pred CCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCce
Q 005240 233 IPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLA 312 (706)
Q Consensus 233 ~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~ 312 (706)
..+...+++|+... |+.-. .| +.|.++|. ....+.++...-....++|+|||..
T Consensus 260 ---------s~v~~ca~sp~E~k-LvlGC-~D-----------gSiiLyD~----~~~~t~~~ka~~~P~~iaWHp~gai 313 (545)
T PF11768_consen 260 ---------SQVICCARSPSEDK-LVLGC-ED-----------GSIILYDT----TRGVTLLAKAEFIPTLIAWHPDGAI 313 (545)
T ss_pred ---------CcceEEecCcccce-EEEEe-cC-----------CeEEEEEc----CCCeeeeeeecccceEEEEcCCCcE
Confidence 22446789999987 54332 11 23666765 2334445555666778899999998
Q ss_pred EEEEeeccccceEEEEEcCCC
Q 005240 313 LVNETWYKTSQTRTWLVCPGS 333 (706)
Q Consensus 313 l~~~~~~~~~~~~l~~~d~~~ 333 (706)
+++.+ ..+.|..+|.+-
T Consensus 314 ~~V~s----~qGelQ~FD~AL 330 (545)
T PF11768_consen 314 FVVGS----EQGELQCFDMAL 330 (545)
T ss_pred EEEEc----CCceEEEEEeec
Confidence 88765 233466666543
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.59 E-value=6.6 Score=42.67 Aligned_cols=49 Identities=12% Similarity=0.104 Sum_probs=37.3
Q ss_pred ceEEEEcc-CC-CceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCC
Q 005240 157 AQLVLGSL-DG-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG 218 (706)
Q Consensus 157 ~~l~~~~l-~g-~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 218 (706)
..|-++|. ++ +..+|... ..+..+..++||++++-.+.+ ..|.+|++.-
T Consensus 193 k~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSD-------------gtIrlWdLgq 244 (735)
T KOG0308|consen 193 KDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSD-------------GTIRLWDLGQ 244 (735)
T ss_pred cceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCC-------------ceEEeeeccc
Confidence 46677787 55 66677655 788999999999999866554 3799999973
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=91.59 E-value=2.6 Score=44.40 Aligned_cols=36 Identities=8% Similarity=-0.095 Sum_probs=26.3
Q ss_pred ceEEEEccCC-CceecCCC-ceEeeeeeCCCCcEEEEEe
Q 005240 157 AQLVLGSLDG-TAKDFGTP-AVYTAVEPSPDQKYVLITS 193 (706)
Q Consensus 157 ~~l~~~~l~g-~~~~lt~~-~~~~~~~~SpDG~~i~~~~ 193 (706)
+.+++++.+| +.+.+..+ .....++|+|+|+.+ ++.
T Consensus 164 g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~-~td 201 (367)
T TIGR02604 164 GGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVF-FCD 201 (367)
T ss_pred ceEEEEecCCCeEEEEecCcCCCccceECCCCCEE-EEc
Confidence 6899999976 66666655 455689999998663 443
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=91.54 E-value=2.8 Score=40.84 Aligned_cols=85 Identities=12% Similarity=0.146 Sum_probs=50.1
Q ss_pred ceEEEEccCC---CceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCC
Q 005240 157 AQLVLGSLDG---TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAED 232 (706)
Q Consensus 157 ~~l~~~~l~g---~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~ 232 (706)
..+.++|+.- ...+|... +.+.+++|.|-.+.-+.+..+ ..++.+||++......+.+...+-
T Consensus 266 ~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGD------------D~qaliWDl~q~~~~~~~dPilay- 332 (364)
T KOG0290|consen 266 NKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGD------------DCQALIWDLQQMPRENGEDPILAY- 332 (364)
T ss_pred ceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCC------------cceEEEEecccccccCCCCchhhh-
Confidence 5677778732 34455555 788999999988877666654 258899999854321221111100
Q ss_pred CCcccCccCCCCcceeeecCCCceEEEE
Q 005240 233 IPVCYNSVREGMRSISWRADKPSTLYWV 260 (706)
Q Consensus 233 ~p~~~~~~~~g~~~~~~spdg~~~l~~~ 260 (706)
.....+..++|++.....|+.+
T Consensus 333 ------~a~~EVNqi~Ws~~~~Dwiai~ 354 (364)
T KOG0290|consen 333 ------TAGGEVNQIQWSSSQPDWIAIC 354 (364)
T ss_pred ------hccceeeeeeecccCCCEEEEE
Confidence 0011244789997665545543
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=91.51 E-value=14 Score=35.79 Aligned_cols=57 Identities=25% Similarity=0.191 Sum_probs=32.7
Q ss_pred ceeEeecCCCCCCCCeeeeecCCCCCccccee--eCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecc
Q 005240 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVS--WSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLF 78 (706)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~--~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt 78 (706)
.|...|+.. |+..--..+... ...+. ..+++++|+.. .....|+.+|+++|+...-.
T Consensus 4 ~l~~~d~~t----G~~~W~~~~~~~--~~~~~~~~~~~~~~v~~~----------~~~~~l~~~d~~tG~~~W~~ 62 (238)
T PF13360_consen 4 TLSALDPRT----GKELWSYDLGPG--IGGPVATAVPDGGRVYVA----------SGDGNLYALDAKTGKVLWRF 62 (238)
T ss_dssp EEEEEETTT----TEEEEEEECSSS--CSSEEETEEEETTEEEEE----------ETTSEEEEEETTTSEEEEEE
T ss_pred EEEEEECCC----CCEEEEEECCCC--CCCccceEEEeCCEEEEE----------cCCCEEEEEECCCCCEEEEe
Confidence 455666644 544433333222 33334 45577777554 34579999999888765443
|
... |
| >KOG4388 consensus Hormone-sensitive lipase HSL [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.44 E-value=0.24 Score=52.60 Aligned_cols=89 Identities=10% Similarity=0.036 Sum_probs=55.8
Q ss_pred eEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHH-HCCeEEEEcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHH
Q 005240 514 PCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFL-ARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEE 592 (706)
Q Consensus 514 p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~ 592 (706)
-+|+.+|||++ |..+-.++- ...+.|+ ++|+-|+..+|.- ..+.-.....+.+.-|..|
T Consensus 397 sli~HcHGGGf--------VAqsSkSHE----~YLr~Wa~aL~cPiiSVdYSL--------APEaPFPRaleEv~fAYcW 456 (880)
T KOG4388|consen 397 SLIVHCHGGGF--------VAQSSKSHE----PYLRSWAQALGCPIISVDYSL--------APEAPFPRALEEVFFAYCW 456 (880)
T ss_pred eEEEEecCCce--------eeecccccc----HHHHHHHHHhCCCeEEeeecc--------CCCCCCCcHHHHHHHHHHH
Confidence 58999999965 443323332 2345565 4899998866631 1111122335556677888
Q ss_pred HHHcCC---CCCCcEEEEEechHHHHHHHHHHh
Q 005240 593 VVRRGV---ADPSRIAVGGHSYGAFMTAHLLAH 622 (706)
Q Consensus 593 l~~~~~---id~~~i~i~G~S~GG~~a~~~~~~ 622 (706)
++.... .-..||.+.|.|.||.+...++.+
T Consensus 457 ~inn~allG~TgEriv~aGDSAGgNL~~~VaLr 489 (880)
T KOG4388|consen 457 AINNCALLGSTGERIVLAGDSAGGNLCFTVALR 489 (880)
T ss_pred HhcCHHHhCcccceEEEeccCCCcceeehhHHH
Confidence 887522 234799999999999986555543
|
|
| >COG3319 Thioesterase domains of type I polyketide synthases or non-ribosomal peptide synthetases [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=91.41 E-value=0.49 Score=46.50 Aligned_cols=53 Identities=13% Similarity=0.069 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhC---CCceeEEEeccC
Q 005240 578 FVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHA---PHLFCCGIARSG 635 (706)
Q Consensus 578 ~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~---p~~~~a~v~~~~ 635 (706)
..+++++...++|..++-. ..+.+.|+|+||.+|.-++.+- ...+..++....
T Consensus 46 ~l~~~a~~yv~~Ir~~QP~-----GPy~L~G~S~GG~vA~evA~qL~~~G~~Va~L~llD~ 101 (257)
T COG3319 46 SLDDMAAAYVAAIRRVQPE-----GPYVLLGWSLGGAVAFEVAAQLEAQGEEVAFLGLLDA 101 (257)
T ss_pred CHHHHHHHHHHHHHHhCCC-----CCEEEEeeccccHHHHHHHHHHHhCCCeEEEEEEecc
Confidence 3444444444444433222 4799999999999998887542 234555544443
|
|
| >PLN02209 serine carboxypeptidase | Back alignment and domain information |
|---|
Probab=91.39 E-value=1.3 Score=47.62 Aligned_cols=153 Identities=9% Similarity=0.004 Sum_probs=74.1
Q ss_pred EEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCC--------CchHHHHHHHC
Q 005240 483 EMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGM--------TPTSSLIFLAR 554 (706)
Q Consensus 483 ~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~ 554 (706)
-.+.+....+..+..|++.... ++.. .|+|+++-|||=++.-.....-.+|...... -......|.+.
T Consensus 42 Gy~~v~~~~~~~lf~~f~es~~-~~~~---~Pl~lWlnGGPG~SS~~g~f~e~GP~~~~~~~~~~~~~~l~~n~~sW~~~ 117 (437)
T PLN02209 42 GYIGIGEEENVQFFYYFIKSDK-NPQE---DPLIIWLNGGPGCSCLSGLFFENGPLALKNKVYNGSVPSLVSTTYSWTKT 117 (437)
T ss_pred EEEEecCCCCeEEEEEEEecCC-CCCC---CCEEEEECCCCcHHHhhhHHHhcCCceeccCCCCCCcccceeCCCchhhc
Confidence 3444544345667777776543 3332 6999999999854422111111222221110 00011123333
Q ss_pred CeEEEEcCCCCcCCCCCCCC--chhhHHHHHHHHHHHHHHHHH-cCCCCCCcEEEEEechHHHHHHHHHHh----C----
Q 005240 555 RFAVLAGPSIPIIGEGDKLP--NDRFVEQLVSSAEAAVEEVVR-RGVADPSRIAVGGHSYGAFMTAHLLAH----A---- 623 (706)
Q Consensus 555 G~~v~~~~~~~~~g~g~~~~--~~~~~~~~~~D~~~~~~~l~~-~~~id~~~i~i~G~S~GG~~a~~~~~~----~---- 623 (706)
--.++. +---+.|+..... ....-+..++|+..++....+ -+.--...+.|+|.||||..+-.++.+ .
T Consensus 118 anllfi-DqPvGtGfSy~~~~~~~~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~~a~~i~~~~~~~~ 196 (437)
T PLN02209 118 ANIIFL-DQPVGSGFSYSKTPIERTSDTSEVKKIHEFLQKWLIKHPQFLSNPFYVVGDSYSGMIVPALVHEISKGNYICC 196 (437)
T ss_pred CcEEEe-cCCCCCCccCCCCCCCccCCHHHHHHHHHHHHHHHHhCccccCCCEEEEecCcCceehHHHHHHHHhhccccc
Confidence 323332 2112223322111 111112334666666653333 333345689999999999866555422 2
Q ss_pred -C-CceeEEEeccCCCCCC
Q 005240 624 -P-HLFCCGIARSGSYNKT 640 (706)
Q Consensus 624 -p-~~~~a~v~~~~~~d~~ 640 (706)
+ =-+++++...|..|..
T Consensus 197 ~~~inl~Gi~igng~td~~ 215 (437)
T PLN02209 197 NPPINLQGYVLGNPITHIE 215 (437)
T ss_pred CCceeeeeEEecCcccChh
Confidence 1 1477888888877743
|
|
| >PRK13615 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=91.18 E-value=13 Score=41.09 Aligned_cols=142 Identities=15% Similarity=0.128 Sum_probs=76.1
Q ss_pred eEEEEccCCCceecCCCceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCccc
Q 005240 158 QLVLGSLDGTAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCY 237 (706)
Q Consensus 158 ~l~~~~l~g~~~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~ 237 (706)
.|++....+..+.+........++|+++| +|+...... ...+.....+| ....+ ..+....
T Consensus 356 ~l~vg~~~~~~~~~~~~~~Lt~PS~d~~g-~vWtv~~g~-----------~~~l~~~~~~G-~~~~v-~v~~~~~----- 416 (557)
T PRK13615 356 VWSVGDGDRDAVLLDTRPGLVAPSLDAQG-YVWSTPASD-----------PRGLVAWGPDG-VGHPV-AVSWTAT----- 416 (557)
T ss_pred eEEEecCCCcceeeccCCccccCcCcCCC-CEEEEeCCC-----------ceEEEEecCCC-ceEEe-eccccCC-----
Confidence 45555555555555555567899999998 776443322 11233332222 22222 1121111
Q ss_pred CccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEE-ee------cccccccceecCCC
Q 005240 238 NSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEIL-HK------LDLRFRSVSWCDDS 310 (706)
Q Consensus 238 ~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l-~~------~~~~~~~~~wspDg 310 (706)
..+..+..|+||-+ ++++...+++.. |++.-+.- +++.++.| +. ......++.|..++
T Consensus 417 ----~~I~~lrvSrDG~R-~Avi~~~~g~~~---------V~va~V~R-~~~~P~~L~~~p~~l~~~l~~v~sl~W~~~~ 481 (557)
T PRK13615 417 ----GRVVSLEVARDGAR-VLVQLETGAGPQ---------LLVASIVR-DGGVPTSLTTTPLELLASPGTPLDATWVDEL 481 (557)
T ss_pred ----CeeEEEEeCCCccE-EEEEEecCCCCE---------EEEEEEEe-CCCcceEeeeccEEcccCcCcceeeEEcCCC
Confidence 11447899999998 776654333222 33322210 34445555 32 23366788899998
Q ss_pred ceEEEEeeccccceEEEEEcCCCC
Q 005240 311 LALVNETWYKTSQTRTWLVCPGSK 334 (706)
Q Consensus 311 ~~l~~~~~~~~~~~~l~~~d~~~~ 334 (706)
...+... ..+....++++.+.+.
T Consensus 482 ~laVl~~-~~~~~~~v~~v~v~g~ 504 (557)
T PRK13615 482 DVATLTL-APDGERQVELHQVGGP 504 (557)
T ss_pred EEEEEec-cCCCCceEEEEECCCc
Confidence 8555542 2234456888888874
|
|
| >PF02450 LCAT: Lecithin:cholesterol acyltransferase; InterPro: IPR003386 Lecithin:cholesterol acyltransferase (LACT), also known as phosphatidylcholine-sterol acyltransferase (2 | Back alignment and domain information |
|---|
Probab=91.11 E-value=0.53 Score=49.94 Aligned_cols=86 Identities=9% Similarity=0.066 Sum_probs=55.4
Q ss_pred hHHHHHHHCCeEEEEcCCCCcCCCCCCCCchh-hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCC
Q 005240 546 TSSLIFLARRFAVLAGPSIPIIGEGDKLPNDR-FVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAP 624 (706)
Q Consensus 546 ~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~~-~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p 624 (706)
.+.+.|.+.||..-. +-+ ..+| .|+... .....+..+...|+.+.+.. .++|.|+||||||.++...+...+
T Consensus 69 ~li~~L~~~GY~~~~-~l~-~~pY--DWR~~~~~~~~~~~~lk~~ie~~~~~~---~~kv~li~HSmGgl~~~~fl~~~~ 141 (389)
T PF02450_consen 69 KLIENLEKLGYDRGK-DLF-AAPY--DWRLSPAERDEYFTKLKQLIEEAYKKN---GKKVVLIAHSMGGLVARYFLQWMP 141 (389)
T ss_pred HHHHHHHhcCcccCC-EEE-EEee--chhhchhhHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCCCchHHHHHHHhcc
Confidence 456778888986511 000 0012 223211 23345666667777666543 579999999999999999887764
Q ss_pred C------ceeEEEeccCCCC
Q 005240 625 H------LFCCGIARSGSYN 638 (706)
Q Consensus 625 ~------~~~a~v~~~~~~d 638 (706)
. .++..|++++.+.
T Consensus 142 ~~~W~~~~i~~~i~i~~p~~ 161 (389)
T PF02450_consen 142 QEEWKDKYIKRFISIGTPFG 161 (389)
T ss_pred chhhHHhhhhEEEEeCCCCC
Confidence 3 4888898887664
|
3.1.43 from EC), is involved in extracellular metabolism of plasma lipoproteins, including cholesterol. It esterifies the free cholesterol transported in plasma lipoproteins, and is activated by apolipoprotein A-I. Defects in LACT cause Norum and Fish eye diseases. This family also includes phospholipid:diacylglycerol acyltransferase (PDAT)(2.3.1.158 from EC), which is involved in triacylglycerol formation by an acyl-CoA independent pathway. The enzyme specifically transfers acyl groups from the sn-2 position of a phospholipid to diacylglycerol, thus forming an sn-1-lysophospholipid [].; GO: 0008374 O-acyltransferase activity, 0006629 lipid metabolic process |
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=91.07 E-value=19 Score=36.39 Aligned_cols=65 Identities=12% Similarity=0.065 Sum_probs=40.6
Q ss_pred ccceeEeecCCCCCCCCeeeeecCCCC-----CcccceeeCCC----CCeEEEEeeccccccccCCceeEEEEEcCCCce
Q 005240 4 FTGIGIHRLLPDDSLGPEKEVHGYPDG-----AKINFVSWSPD----GKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA 74 (706)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~i~~~~~~-----~~~~~~~~SPD----G~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~ 74 (706)
...|.+.||.+ ++..+.-.+|.. .....+++-.. ++..||..+ .+...|.++|+.+++.
T Consensus 33 ~pKLv~~Dl~t----~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD--------~~~~glIV~dl~~~~s 100 (287)
T PF03022_consen 33 PPKLVAFDLKT----NQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITD--------SGGPGLIVYDLATGKS 100 (287)
T ss_dssp --EEEEEETTT----TCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEE--------TTTCEEEEEETTTTEE
T ss_pred CcEEEEEECCC----CcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeC--------CCcCcEEEEEccCCcE
Confidence 45788889977 554433334532 23445555552 237889875 4556999999999999
Q ss_pred eecccC
Q 005240 75 KPLFES 80 (706)
Q Consensus 75 ~~lt~~ 80 (706)
+++.+.
T Consensus 101 ~Rv~~~ 106 (287)
T PF03022_consen 101 WRVLHN 106 (287)
T ss_dssp EEEETC
T ss_pred EEEecC
Confidence 998654
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=90.89 E-value=24 Score=37.27 Aligned_cols=55 Identities=13% Similarity=0.060 Sum_probs=28.7
Q ss_pred ceeeeecCCCceeeeecccchhhhhhhhhhccCCCceecccCCCEEEEEEecCCCCcEEEEEECCCCceeE
Q 005240 396 FLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQ 466 (706)
Q Consensus 396 ~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~p~~v~~~~~~~~~~~~ 466 (706)
.|+.+|.++|+ .+|....- ......+....+..++....+ ..++.+|..+|+...
T Consensus 290 ~l~~~d~~tG~--~~W~~~~~----------~~~~~ssp~i~g~~l~~~~~~----G~l~~~d~~tG~~~~ 344 (377)
T TIGR03300 290 VVVALDRRSGS--ELWKNDEL----------KYRQLTAPAVVGGYLVVGDFE----GYLHWLSREDGSFVA 344 (377)
T ss_pred eEEEEECCCCc--EEEccccc----------cCCccccCEEECCEEEEEeCC----CEEEEEECCCCCEEE
Confidence 47788988885 35543210 000001111234555543322 469999988887654
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PF05057 DUF676: Putative serine esterase (DUF676); InterPro: IPR007751 This domain, whose function is unknown, is found within a group of putative lipases | Back alignment and domain information |
|---|
Probab=90.31 E-value=0.33 Score=46.83 Aligned_cols=21 Identities=29% Similarity=0.447 Sum_probs=18.2
Q ss_pred CCcEEEEEechHHHHHHHHHH
Q 005240 601 PSRIAVGGHSYGAFMTAHLLA 621 (706)
Q Consensus 601 ~~~i~i~G~S~GG~~a~~~~~ 621 (706)
..+|.++|||+||.++-+++.
T Consensus 77 ~~~IsfIgHSLGGli~r~al~ 97 (217)
T PF05057_consen 77 IRKISFIGHSLGGLIARYALG 97 (217)
T ss_pred cccceEEEecccHHHHHHHHH
Confidence 468999999999999877775
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=90.30 E-value=13 Score=36.94 Aligned_cols=80 Identities=14% Similarity=0.142 Sum_probs=55.5
Q ss_pred ceEEEEccCC-C---ceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCC-CeeEEcccCCCC
Q 005240 157 AQLVLGSLDG-T---AKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG-KLVRELCDLPPA 230 (706)
Q Consensus 157 ~~l~~~~l~g-~---~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~l~~~~~~ 230 (706)
++|-++++.. + +..+... ..+..++++-+|..||-.+..+ .-|.+||..+ +.+..+-.+...
T Consensus 159 GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkG------------TLIRIFdt~~g~~l~E~RRG~d~ 226 (346)
T KOG2111|consen 159 GQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKG------------TLIRIFDTEDGTLLQELRRGVDR 226 (346)
T ss_pred ceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCc------------EEEEEEEcCCCcEeeeeecCCch
Confidence 7888888833 3 3445555 7889999999999999777664 4789999874 445554433211
Q ss_pred CCCCcccCccCCCCcceeeecCCCceEEEE
Q 005240 231 EDIPVCYNSVREGMRSISWRADKPSTLYWV 260 (706)
Q Consensus 231 ~~~p~~~~~~~~g~~~~~~spdg~~~l~~~ 260 (706)
.....++||||++. |+..
T Consensus 227 -----------A~iy~iaFSp~~s~-Lavs 244 (346)
T KOG2111|consen 227 -----------ADIYCIAFSPNSSW-LAVS 244 (346)
T ss_pred -----------heEEEEEeCCCccE-EEEE
Confidence 22557899999987 6644
|
|
| >KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.16 E-value=35 Score=39.65 Aligned_cols=66 Identities=20% Similarity=0.158 Sum_probs=39.4
Q ss_pred eeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEec
Q 005240 36 VSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIP 106 (706)
Q Consensus 36 ~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~ 106 (706)
-..|||.+.+++..+..+.... ......++.++.++. ........ +..+..+.|||.|..|+|...
T Consensus 102 ~~~s~d~~~~~~~~~~~~~~rh-s~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~wsp~~~~l~yv~~ 167 (755)
T KOG2100|consen 102 DLISPDRKYILLGRNYKKRFRH-SYTAKYHLYDLNTGE-KLHPPEYE---GSKIQYASWSPLGNDLAYVLH 167 (755)
T ss_pred cccChhhhhheeccCcccccce-eeEEEEEEEEcCCCC-cccCcccC---CCeeEEEEEcCCCCEEEEEEe
Confidence 3778999999998764221111 334556677777666 11111111 112456899999988888753
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.03 E-value=2.7 Score=47.04 Aligned_cols=101 Identities=15% Similarity=0.106 Sum_probs=62.7
Q ss_pred ccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCC--CceeecccCCCccccccccceEEecCCcEEEEEecCCCC
Q 005240 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAET--GEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (706)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~--g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~ 110 (706)
....++||.++.+|.... +|+ |.++.--+ +.....+...- -...+..+.||+||.+|+...
T Consensus 208 ~t~~~~spn~~~~Aa~d~--------dGr--I~vw~d~~~~~~~~t~t~lHW--H~~~V~~L~fS~~G~~LlSGG----- 270 (792)
T KOG1963|consen 208 ITCVALSPNERYLAAGDS--------DGR--ILVWRDFGSSDDSETCTLLHW--HHDEVNSLSFSSDGAYLLSGG----- 270 (792)
T ss_pred ceeEEeccccceEEEecc--------CCc--EEEEeccccccccccceEEEe--cccccceeEEecCCceEeecc-----
Confidence 355899999999988642 444 44443222 22111111110 011377899999999888542
Q ss_pred CCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCCceecCCC-ceEeeeeeCCCCcE
Q 005240 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKY 188 (706)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~~~lt~~-~~~~~~~~SpDG~~ 188 (706)
..+.|.++.+ +++.+-|..- ..+..+.+|||+..
T Consensus 271 --------------------------------------------~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~ 306 (792)
T KOG1963|consen 271 --------------------------------------------REGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDL 306 (792)
T ss_pred --------------------------------------------cceEEEEEeecCCCcccccccCCeeEEEEEcCCCCe
Confidence 1267778888 5564444433 67889999999998
Q ss_pred EEEEee
Q 005240 189 VLITSM 194 (706)
Q Consensus 189 i~~~~~ 194 (706)
.+....
T Consensus 307 ~sl~~~ 312 (792)
T KOG1963|consen 307 YSLVLE 312 (792)
T ss_pred EEEEec
Confidence 766554
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=89.95 E-value=20 Score=34.78 Aligned_cols=12 Identities=33% Similarity=0.407 Sum_probs=9.8
Q ss_pred ceeeeecCCCce
Q 005240 396 FLDLFDINTGSK 407 (706)
Q Consensus 396 ~l~~~d~~~g~~ 407 (706)
.|+.+|+++|+.
T Consensus 223 ~l~~~d~~tG~~ 234 (238)
T PF13360_consen 223 RLYALDLKTGKV 234 (238)
T ss_dssp EEEEEETTTTEE
T ss_pred EEEEEECCCCCE
Confidence 688999999863
|
... |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=89.90 E-value=5.1 Score=43.12 Aligned_cols=77 Identities=19% Similarity=0.343 Sum_probs=36.3
Q ss_pred eEEEEecCCCe-eEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCC---
Q 005240 210 KVQVWTTDGKL-VRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEP--- 285 (706)
Q Consensus 210 ~i~~~~~~~~~-~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~--- 285 (706)
.|.+||.++++ ++++.-. .+..+.||++|.. ++.+.. +.+++++.+-
T Consensus 127 ~i~~yDw~~~~~i~~i~v~---------------~vk~V~Ws~~g~~-val~t~-------------~~i~il~~~~~~~ 177 (443)
T PF04053_consen 127 FICFYDWETGKLIRRIDVS---------------AVKYVIWSDDGEL-VALVTK-------------DSIYILKYNLEAV 177 (443)
T ss_dssp EEEEE-TTT--EEEEESS----------------E-EEEEE-TTSSE-EEEE-S--------------SEEEEEE-HHHH
T ss_pred CEEEEEhhHcceeeEEecC---------------CCcEEEEECCCCE-EEEEeC-------------CeEEEEEecchhc
Confidence 48999998554 4444211 1357899999987 665531 1244433310
Q ss_pred ---CCCC---CceEEeecccccccceecCCCceEEEEe
Q 005240 286 ---AEGE---KPEILHKLDLRFRSVSWCDDSLALVNET 317 (706)
Q Consensus 286 ---~~~~---~~~~l~~~~~~~~~~~wspDg~~l~~~~ 317 (706)
-+.| ....+......+.+..|-.| .++|+.
T Consensus 178 ~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT 213 (443)
T PF04053_consen 178 AAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTT 213 (443)
T ss_dssp HHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-
T ss_pred ccccccCchhceEEEEEecceeEEEEEEcC--EEEEEc
Confidence 0111 12233333778888899887 666654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=89.70 E-value=21 Score=34.88 Aligned_cols=81 Identities=22% Similarity=0.158 Sum_probs=56.9
Q ss_pred EeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCcccccc
Q 005240 9 IHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAV 88 (706)
Q Consensus 9 ~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~ 88 (706)
|-.|++ +.|+..++. |.++.....+..-|||..-.. +....|-.++.++.+.++.+-..+ .-+++
T Consensus 85 iGhLdP--~tGev~~yp-Lg~Ga~Phgiv~gpdg~~Wit-----------d~~~aI~R~dpkt~evt~f~lp~~-~a~~n 149 (353)
T COG4257 85 IGHLDP--ATGEVETYP-LGSGASPHGIVVGPDGSAWIT-----------DTGLAIGRLDPKTLEVTRFPLPLE-HADAN 149 (353)
T ss_pred ceecCC--CCCceEEEe-cCCCCCCceEEECCCCCeeEe-----------cCcceeEEecCcccceEEeecccc-cCCCc
Confidence 445655 779999887 788888889999999985433 334488899998887766542222 12334
Q ss_pred ccceEEecCCcEEEEEe
Q 005240 89 FGSFVWVNNSTLLIFTI 105 (706)
Q Consensus 89 ~~~~~wSpDg~~l~~~~ 105 (706)
.....+.++|. |.|+.
T Consensus 150 let~vfD~~G~-lWFt~ 165 (353)
T COG4257 150 LETAVFDPWGN-LWFTG 165 (353)
T ss_pred ccceeeCCCcc-EEEee
Confidence 67788999997 67764
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.62 E-value=31 Score=38.22 Aligned_cols=55 Identities=13% Similarity=0.067 Sum_probs=35.2
Q ss_pred eeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEE
Q 005240 37 SWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (706)
Q Consensus 37 ~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~ 104 (706)
.++-.+++|++.++ ..-||+++-.+|+.+.+.+.... ........|++..++|+.
T Consensus 40 c~dst~~~l~~GsS----------~G~lyl~~R~~~~~~~~~~~~~~---~~~~~~~vs~~e~lvAag 94 (726)
T KOG3621|consen 40 CVDATEEYLAMGSS----------AGSVYLYNRHTGEMRKLKNEGAT---GITCVRSVSSVEYLVAAG 94 (726)
T ss_pred EeecCCceEEEecc----------cceEEEEecCchhhhcccccCcc---ceEEEEEecchhHhhhhh
Confidence 45666778877643 46899999889998888654322 112234556666666654
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.37 E-value=12 Score=37.63 Aligned_cols=179 Identities=13% Similarity=0.099 Sum_probs=106.5
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceee-cccCCCccccccccceEEecCCcEEEEEecCCCC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKP-LFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~-lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~ 110 (706)
.+..+.+-|-..|++..+ ....+-++|+++|+.+. ||-+.. .++.++.|+-.-+|+....+
T Consensus 153 WVr~vavdP~n~wf~tgs----------~DrtikIwDlatg~LkltltGhi~-----~vr~vavS~rHpYlFs~ged--- 214 (460)
T KOG0285|consen 153 WVRSVAVDPGNEWFATGS----------ADRTIKIWDLATGQLKLTLTGHIE-----TVRGVAVSKRHPYLFSAGED--- 214 (460)
T ss_pred eEEEEeeCCCceeEEecC----------CCceeEEEEcccCeEEEeecchhh-----eeeeeeecccCceEEEecCC---
Confidence 566777888777776643 33567778999998664 332222 26788888887776655321
Q ss_pred CCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCCcee-cCCC-ceEeeeeeCCCCc
Q 005240 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKD-FGTP-AVYTAVEPSPDQK 187 (706)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~~~-lt~~-~~~~~~~~SpDG~ 187 (706)
.++--+|| ..+.-+ .-.. ..+.+++.-|.=+
T Consensus 215 ----------------------------------------------k~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTld 248 (460)
T KOG0285|consen 215 ----------------------------------------------KQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLD 248 (460)
T ss_pred ----------------------------------------------CeeEEEechhhhhHHHhccccceeEEEeccccce
Confidence 35555676 333332 2222 5677888888876
Q ss_pred EEEEEeeccCcccccccccccceEEEEecCCCeeE-EcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCC
Q 005240 188 YVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR-ELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRG 266 (706)
Q Consensus 188 ~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~ 266 (706)
.|+ +..+. +.+.+||+.++... .|..+... +..+.+.|-..+ ++-.
T Consensus 249 vl~-t~grD------------st~RvWDiRtr~~V~~l~GH~~~-------------V~~V~~~~~dpq-vit~------ 295 (460)
T KOG0285|consen 249 VLV-TGGRD------------STIRVWDIRTRASVHVLSGHTNP-------------VASVMCQPTDPQ-VITG------ 295 (460)
T ss_pred eEE-ecCCc------------ceEEEeeecccceEEEecCCCCc-------------ceeEEeecCCCc-eEEe------
Confidence 664 44432 57899999866433 33322211 223444444444 4322
Q ss_pred CCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEE
Q 005240 267 DANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVN 315 (706)
Q Consensus 267 ~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~ 315 (706)
.....|.+||+. .+..+..|+.....+..+...|.-..++.
T Consensus 296 ------S~D~tvrlWDl~--agkt~~tlt~hkksvral~lhP~e~~fAS 336 (460)
T KOG0285|consen 296 ------SHDSTVRLWDLR--AGKTMITLTHHKKSVRALCLHPKENLFAS 336 (460)
T ss_pred ------cCCceEEEeeec--cCceeEeeecccceeeEEecCCchhhhhc
Confidence 122358888884 55566778888888888888887554443
|
|
| >PLN02454 triacylglycerol lipase | Back alignment and domain information |
|---|
Probab=89.31 E-value=0.73 Score=48.17 Aligned_cols=41 Identities=24% Similarity=0.255 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHh
Q 005240 582 LVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAH 622 (706)
Q Consensus 582 ~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~ 622 (706)
..+++...|+.++++..-.+-+|.|+|||+||.||+.++..
T Consensus 208 ~r~qvl~~V~~l~~~Yp~~~~sI~vTGHSLGGALAtLaA~d 248 (414)
T PLN02454 208 ARSQLLAKIKELLERYKDEKLSIVLTGHSLGASLATLAAFD 248 (414)
T ss_pred HHHHHHHHHHHHHHhCCCCCceEEEEecCHHHHHHHHHHHH
Confidence 44555666776766532222369999999999999998843
|
|
| >PLN03016 sinapoylglucose-malate O-sinapoyltransferase | Back alignment and domain information |
|---|
Probab=89.10 E-value=2 Score=46.16 Aligned_cols=57 Identities=12% Similarity=0.074 Sum_probs=36.7
Q ss_pred HHHHHHHH-HHHHcCCCCCCcEEEEEechHHHHHHHHHHh----C------CCceeEEEeccCCCCCC
Q 005240 584 SSAEAAVE-EVVRRGVADPSRIAVGGHSYGAFMTAHLLAH----A------PHLFCCGIARSGSYNKT 640 (706)
Q Consensus 584 ~D~~~~~~-~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~----~------p~~~~a~v~~~~~~d~~ 640 (706)
+|+..++. |+.+.+..-...+.|+|.||||..+-.++.+ . +=-+++++...|..+..
T Consensus 146 ~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~la~~i~~~n~~~~~~~inLkGi~iGNg~t~~~ 213 (433)
T PLN03016 146 KRTHEFLQKWLSRHPQYFSNPLYVVGDSYSGMIVPALVQEISQGNYICCEPPINLQGYMLGNPVTYMD 213 (433)
T ss_pred HHHHHHHHHHHHhChhhcCCCEEEEccCccceehHHHHHHHHhhcccccCCcccceeeEecCCCcCch
Confidence 55555555 4433333345789999999999866555432 2 11578888888877643
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.74 E-value=33 Score=35.77 Aligned_cols=195 Identities=16% Similarity=0.177 Sum_probs=100.6
Q ss_pred ccceee-CCCCCeEEEEeeccccccccCCceeEEEEEcCC--CceeecccCCCccccccccceEEecCCcEEEEEecCCC
Q 005240 33 INFVSW-SPDGKRIAFSVRVDEEDNVSSCKLRVWIADAET--GEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSR 109 (706)
Q Consensus 33 ~~~~~~-SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~--g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~ 109 (706)
.....+ ++++..++.... .....+.+++..+ .....+...... +..+.|+|+++.++....
T Consensus 112 ~~~~~~~~~~~~~~~~~~~--------~~d~~~~~~~~~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~~~~~~~--- 175 (466)
T COG2319 112 VSKLALSSPDGNSILLASS--------SLDGTVKLWDLSTPGKLIRTLEGHSES-----VTSLAFSPDGKLLASGSS--- 175 (466)
T ss_pred eeeEEEECCCcceEEeccC--------CCCccEEEEEecCCCeEEEEEecCccc-----EEEEEECCCCCEEEecCC---
Confidence 445555 899984433321 2234677777765 333444333332 567899999995554321
Q ss_pred CCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccC-CCc-eecCCC-ceEeeeeeCCCC
Q 005240 110 RDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD-GTA-KDFGTP-AVYTAVEPSPDQ 186 (706)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~-g~~-~~lt~~-~~~~~~~~SpDG 186 (706)
. ...+..+++. +.. ..+... ..+..++|+|++
T Consensus 176 ~---------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 210 (466)
T COG2319 176 L---------------------------------------------DGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDG 210 (466)
T ss_pred C---------------------------------------------CCceEEEEcCCCceEEeeccCCCceEEEEEcCCc
Confidence 0 1345555653 322 233322 578899999999
Q ss_pred cEEEEEeeccCcccccccccccceEEEEecCCCeeEE-cccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccC
Q 005240 187 KYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRE-LCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDR 265 (706)
Q Consensus 187 ~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~ 265 (706)
+.++..... ...+.+|+...+.... ....... .. ...|+|++.. ++ ....
T Consensus 211 ~~~~~~~~~------------d~~i~~wd~~~~~~~~~~~~~~~~------------~~-~~~~~~~~~~-~~-~~~~-- 261 (466)
T COG2319 211 GLLIASGSS------------DGTIRLWDLSTGKLLRSTLSGHSD------------SV-VSSFSPDGSL-LA-SGSS-- 261 (466)
T ss_pred ceEEEEecC------------CCcEEEEECCCCcEEeeecCCCCc------------ce-eEeECCCCCE-EE-EecC--
Confidence 844444122 1355677766333222 1111100 01 1168898843 33 2111
Q ss_pred CCCccccCccceeeeecCCCCCCCCc--eEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCC
Q 005240 266 GDANVEVSPRDIIYTQPAEPAEGEKP--EILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (706)
Q Consensus 266 ~~~~~~~~~~~~l~~~d~~~~~~~~~--~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~ 333 (706)
...+.+++. ..... ..+..+...+....|.|++..++... .+ +...+| +..+
T Consensus 262 ---------d~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~d-~~~~~~--~~~~ 315 (466)
T COG2319 262 ---------DGTIRLWDL---RSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGS-SD-GTVRLW--DLET 315 (466)
T ss_pred ---------CCcEEEeee---cCCCcEEEEEecCCccEEEEEECCCCCEEEEee-CC-CcEEEE--EcCC
Confidence 123566666 22221 22222356677778999888877743 33 345566 6555
|
|
| >PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family | Back alignment and domain information |
|---|
Probab=88.65 E-value=1.1 Score=43.11 Aligned_cols=34 Identities=35% Similarity=0.220 Sum_probs=23.4
Q ss_pred EEEEEechHHHHHHHHHHhC--------CCceeEEEeccCCC
Q 005240 604 IAVGGHSYGAFMTAHLLAHA--------PHLFCCGIARSGSY 637 (706)
Q Consensus 604 i~i~G~S~GG~~a~~~~~~~--------p~~~~a~v~~~~~~ 637 (706)
.||+|+|.||.+|+.++... ...||++|..+|..
T Consensus 104 dGvlGFSQGA~lAa~ll~~~~~~~~~~~~~~~kf~V~~sg~~ 145 (212)
T PF03959_consen 104 DGVLGFSQGAALAALLLALQQRGRPDGAHPPFKFAVFISGFP 145 (212)
T ss_dssp SEEEEETHHHHHHHHHHHHHHHHST--T----SEEEEES---
T ss_pred EEEEeecHHHHHHHHHHHHHHhhcccccCCCceEEEEEcccC
Confidence 69999999999998888532 23589999988764
|
It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A. |
| >PF11288 DUF3089: Protein of unknown function (DUF3089); InterPro: IPR021440 This family of proteins has no known function | Back alignment and domain information |
|---|
Probab=88.54 E-value=1.2 Score=41.99 Aligned_cols=81 Identities=16% Similarity=0.085 Sum_probs=52.3
Q ss_pred eEEEEcCCCCcCCCCCC-CC---chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhC----C---
Q 005240 556 FAVLAGPSIPIIGEGDK-LP---NDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHA----P--- 624 (706)
Q Consensus 556 ~~v~~~~~~~~~g~g~~-~~---~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~----p--- 624 (706)
..|++|.||=..-+... .. .....+..+.|+.+|.+|-+++.. +...++|.|||.|+.+...++-.. |
T Consensus 46 ~~vfAP~YRQatl~~~~~~~~~~~~~a~~~ay~DV~~AF~~yL~~~n-~GRPfILaGHSQGs~~l~~LL~e~~~~~pl~~ 124 (207)
T PF11288_consen 46 CNVFAPRYRQATLYAFLDTDREDAEKAFDLAYSDVRAAFDYYLANYN-NGRPFILAGHSQGSMHLLRLLKEEIAGDPLRK 124 (207)
T ss_pred CccccChhhcchhhhhhccCcchhHHHHHhhHHHHHHHHHHHHHhcC-CCCCEEEEEeChHHHHHHHHHHHHhcCchHHh
Confidence 45666777633322111 01 233456679999999998877642 236899999999999999998654 1
Q ss_pred CceeEEEeccCCC
Q 005240 625 HLFCCGIARSGSY 637 (706)
Q Consensus 625 ~~~~a~v~~~~~~ 637 (706)
.++.|-+...++.
T Consensus 125 rLVAAYliG~~v~ 137 (207)
T PF11288_consen 125 RLVAAYLIGYPVT 137 (207)
T ss_pred hhheeeecCcccc
Confidence 2455555555543
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.50 E-value=38 Score=37.00 Aligned_cols=192 Identities=14% Similarity=0.237 Sum_probs=107.4
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCC-ceeecccCCCccccccccceEEecCCcEEEEEecCCCC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETG-EAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g-~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~ 110 (706)
++-.+.+.|---|+.-+-. +|..+||-++..+. +.-.++..+ ++...+-+--.+|+..+++
T Consensus 15 RVKsVd~HPtePw~la~Ly--------nG~V~IWnyetqtmVksfeV~~~P-------vRa~kfiaRknWiv~GsDD--- 76 (794)
T KOG0276|consen 15 RVKSVDFHPTEPWILAALY--------NGDVQIWNYETQTMVKSFEVSEVP-------VRAAKFIARKNWIVTGSDD--- 76 (794)
T ss_pred ceeeeecCCCCceEEEeee--------cCeeEEEecccceeeeeeeecccc-------hhhheeeeccceEEEecCC---
Confidence 5777888898888876554 56666665553321 122343332 5566666666677765432
Q ss_pred CCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CC-CceecCCC-ceEeeeeeCCCCc
Q 005240 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTP-AVYTAVEPSPDQK 187 (706)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g-~~~~lt~~-~~~~~~~~SpDG~ 187 (706)
.+|-+++. ++ +++..... ..++.++..|.--
T Consensus 77 ----------------------------------------------~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P 110 (794)
T KOG0276|consen 77 ----------------------------------------------MQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLP 110 (794)
T ss_pred ----------------------------------------------ceEEEEecccceeeEEeeccccceeeeeecCCCC
Confidence 56666777 55 56666655 7889999999988
Q ss_pred EEEEEeeccCcccccccccccceEEEEecCCCe--eEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccC
Q 005240 188 YVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL--VRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDR 265 (706)
Q Consensus 188 ~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~ 265 (706)
+++-++.+ ..|.+|+-+.+- .+....+. +.+-.++|.|...... ++.
T Consensus 111 ~vLtsSDD-------------m~iKlW~we~~wa~~qtfeGH~-------------HyVMqv~fnPkD~ntF--aS~--- 159 (794)
T KOG0276|consen 111 YVLTSSDD-------------MTIKLWDWENEWACEQTFEGHE-------------HYVMQVAFNPKDPNTF--ASA--- 159 (794)
T ss_pred eEEecCCc-------------cEEEEeeccCceeeeeEEcCcc-------------eEEEEEEecCCCccce--eee---
Confidence 88655544 356666665442 22222221 1233566777554312 211
Q ss_pred CCCccccCccceeeeecCCCCCCCCc-eEEeecccccccceecCCC--ceEEEEeeccccceEEEEEc
Q 005240 266 GDANVEVSPRDIIYTQPAEPAEGEKP-EILHKLDLRFRSVSWCDDS--LALVNETWYKTSQTRTWLVC 330 (706)
Q Consensus 266 ~~~~~~~~~~~~l~~~d~~~~~~~~~-~~l~~~~~~~~~~~wspDg--~~l~~~~~~~~~~~~l~~~d 330 (706)
.-..++.+|.+ ....+ -.|..+...+..+.+-+-| -+|+..++ +...+||-+.
T Consensus 160 -------sLDrTVKVWsl---gs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaD--D~tiKvWDyQ 215 (794)
T KOG0276|consen 160 -------SLDRTVKVWSL---GSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGAD--DLTIKVWDYQ 215 (794)
T ss_pred -------eccccEEEEEc---CCCCCceeeeccccCcceEEeccCCCcceEEecCC--CceEEEeecc
Confidence 11124667777 22222 3455667777778776654 45555442 2344555443
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=88.41 E-value=28 Score=35.92 Aligned_cols=147 Identities=13% Similarity=0.091 Sum_probs=74.8
Q ss_pred eEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCC--CCCCcccCccCCCCcceeeecCC
Q 005240 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPA--EDIPVCYNSVREGMRSISWRADK 253 (706)
Q Consensus 176 ~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~--~~~p~~~~~~~~g~~~~~~spdg 253 (706)
+..++++.+||..+ ++...... ......|+.++.+|...+.+.-.... ......-.....|...++++|||
T Consensus 86 D~Egi~~~~~g~~~-is~E~~~~------~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG 158 (326)
T PF13449_consen 86 DPEGIAVPPDGSFW-ISSEGGRT------GGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDG 158 (326)
T ss_pred ChhHeEEecCCCEE-EEeCCccC------CCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCC
Confidence 55577786676544 34333200 00125899999886655554211110 00000000112345589999999
Q ss_pred CceEEEEEeccC-CCCccc---cCccceeeeecCCCCCC-CC-ceEE-ee--------cccccccceecCCCceEEEEee
Q 005240 254 PSTLYWVEAQDR-GDANVE---VSPRDIIYTQPAEPAEG-EK-PEIL-HK--------LDLRFRSVSWCDDSLALVNETW 318 (706)
Q Consensus 254 ~~~l~~~~~~~~-~~~~~~---~~~~~~l~~~d~~~~~~-~~-~~~l-~~--------~~~~~~~~~wspDg~~l~~~~~ 318 (706)
+. |+.+....- .+.... ....-+|+.+|. .. ++ ..+. .. ....+..+.+.+|++.|+....
T Consensus 159 ~~-l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~---~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~ 234 (326)
T PF13449_consen 159 RT-LFAAMESPLKQDGPRANPDNGSPLRILRYDP---KTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERD 234 (326)
T ss_pred CE-EEEEECccccCCCcccccccCceEEEEEecC---CCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEcc
Confidence 97 655543221 111000 011135667766 32 22 2222 11 2456778899999997666543
Q ss_pred c---cccceEEEEEcCCC
Q 005240 319 Y---KTSQTRTWLVCPGS 333 (706)
Q Consensus 319 ~---~~~~~~l~~~d~~~ 333 (706)
. .....+||.+++..
T Consensus 235 ~~~~~~~~~ri~~v~l~~ 252 (326)
T PF13449_consen 235 FSPGTGNYKRIYRVDLSD 252 (326)
T ss_pred CCCCccceEEEEEEEccc
Confidence 1 23567899999876
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.38 E-value=24 Score=33.69 Aligned_cols=180 Identities=14% Similarity=0.046 Sum_probs=92.2
Q ss_pred eeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccccceEE-
Q 005240 248 SWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRT- 326 (706)
Q Consensus 248 ~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l- 326 (706)
..+|+|+. |--...+.++. .......||.+-+ +++++.+...-+.-..+.|+.|.+.+++..+ .+..+
T Consensus 115 kvdP~Gry--y~GtMad~~~~--le~~~g~Ly~~~~----~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDs---ln~~V~ 183 (310)
T KOG4499|consen 115 KVDPDGRY--YGGTMADFGDD--LEPIGGELYSWLA----GHQVELIWNCVGISNGLAWDSDAKKFYYIDS---LNYEVD 183 (310)
T ss_pred ccCCCCce--eeeeecccccc--ccccccEEEEecc----CCCceeeehhccCCccccccccCcEEEEEcc---CceEEe
Confidence 46778874 21111222221 2233456887654 5677777766666678899999999998753 23345
Q ss_pred -EEEcCCCCC-CCceeeecCcc-cccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEec-CCCCCCCCCCceeeeec
Q 005240 327 -WLVCPGSKD-VAPRVLFDRVF-ENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNG-RGFTPEGNIPFLDLFDI 402 (706)
Q Consensus 327 -~~~d~~~~~-~~~~~l~~~~~-~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~l~~~d~ 402 (706)
|.+|..++. .+++.+++-.- ++. =..-|||..| . .++. +|+.. +|. .+..+|+
T Consensus 184 a~dyd~~tG~~snr~~i~dlrk~~~~--------e~~~PDGm~I--D----~eG~--L~Va~~ng~-------~V~~~dp 240 (310)
T KOG4499|consen 184 AYDYDCPTGDLSNRKVIFDLRKSQPF--------ESLEPDGMTI--D----TEGN--LYVATFNGG-------TVQKVDP 240 (310)
T ss_pred eeecCCCcccccCcceeEEeccCCCc--------CCCCCCcceE--c----cCCc--EEEEEecCc-------EEEEECC
Confidence 888888865 23444543221 111 1125788766 1 0222 33221 221 4788999
Q ss_pred CCCceeeeecccchhhhhhhhhhccCCCceecccCCCEEEEE--EecCCCCcEEEEEECCCCceeEeecCCCC
Q 005240 403 NTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTS--KESKTEITQYHILSWPLKKSSQITNFPHP 473 (706)
Q Consensus 403 ~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~--~~~~~~p~~v~~~~~~~~~~~~lt~~~~~ 473 (706)
.||+.-.-+..+- +...+..|---+--++|+ ....++|-.+ .-|.+.|..-++|.+++.
T Consensus 241 ~tGK~L~eiklPt-----------~qitsccFgGkn~d~~yvT~aa~~~dp~~~-~~~p~aG~iykitgl~~~ 301 (310)
T KOG4499|consen 241 TTGKILLEIKLPT-----------PQITSCCFGGKNLDILYVTTAAKFDDPVRT-NTDPNAGTIYKITGLNAK 301 (310)
T ss_pred CCCcEEEEEEcCC-----------CceEEEEecCCCccEEEEEehhcccCchhc-ccCCCCccEEEecCcccC
Confidence 9998533222221 111123343221123332 2333344333 335556777777776643
|
|
| >PF05705 DUF829: Eukaryotic protein of unknown function (DUF829); InterPro: IPR008547 This signature identifies Transmembrane protein 53, that have no known function but are predicted to be integral membrane proteins | Back alignment and domain information |
|---|
Probab=88.14 E-value=8.7 Score=37.63 Aligned_cols=41 Identities=15% Similarity=0.065 Sum_probs=34.8
Q ss_pred HHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHH
Q 005240 650 RFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRW 690 (706)
Q Consensus 650 ~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f 690 (706)
++.+..++.|.+++...|++..|.-....+..+.++.+.+|
T Consensus 199 ~~~~~~~~~G~~V~~~~f~~S~HV~H~r~~p~~Y~~~v~~f 239 (240)
T PF05705_consen 199 EHAEEARRKGWDVRAEKFEDSPHVAHLRKHPDRYWRAVDEF 239 (240)
T ss_pred HHHHHHHHcCCeEEEecCCCCchhhhcccCHHHHHHHHHhh
Confidence 88888888999999999999999877677777777777766
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.93 E-value=20 Score=34.82 Aligned_cols=60 Identities=10% Similarity=0.127 Sum_probs=34.4
Q ss_pred eeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCC--eeEEcccCCCCCCCCcccCccCCC-CcceeeecCCCc
Q 005240 179 AVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK--LVRELCDLPPAEDIPVCYNSVREG-MRSISWRADKPS 255 (706)
Q Consensus 179 ~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~l~~~~~~~~~p~~~~~~~~g-~~~~~~spdg~~ 255 (706)
...||......|+...++ .+.+||+..- ..+..+... | .+.| .+...||+-|.-
T Consensus 208 ~~S~s~~~~~FAv~~Qdg-------------~~~I~DVR~~~tpm~~~sstr-----p-----~hnGa~R~c~Fsl~g~l 264 (344)
T KOG4532|consen 208 YNSFSENDLQFAVVFQDG-------------TCAIYDVRNMATPMAEISSTR-----P-----HHNGAFRVCRFSLYGLL 264 (344)
T ss_pred eeeeccCcceEEEEecCC-------------cEEEEEecccccchhhhcccC-----C-----CCCCceEEEEecCCCcc
Confidence 456787777766655442 6778887522 111211111 1 0133 557899998887
Q ss_pred eEEEEE
Q 005240 256 TLYWVE 261 (706)
Q Consensus 256 ~l~~~~ 261 (706)
.|.|++
T Consensus 265 DLLf~s 270 (344)
T KOG4532|consen 265 DLLFIS 270 (344)
T ss_pred eEEEEe
Confidence 787775
|
|
| >KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures] | Back alignment and domain information |
|---|
Probab=87.76 E-value=53 Score=37.23 Aligned_cols=150 Identities=15% Similarity=0.244 Sum_probs=83.3
Q ss_pred cceEEEEccCC-Ccee------cCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccC
Q 005240 156 TAQLVLGSLDG-TAKD------FGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDL 227 (706)
Q Consensus 156 ~~~l~~~~l~g-~~~~------lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 227 (706)
..+|....++| +.++ |.-+ ..+-.++|.=-.+.|+.+.... ..|....+.|.+.+.+...
T Consensus 998 g~~I~~lplng~~~~K~~ak~~l~~p~~IiVGidfDC~e~mvyWtDv~g------------~SI~rasL~G~Ep~ti~n~ 1065 (1289)
T KOG1214|consen 998 GQQIGYLPLNGTRLQKDAAKTLLSLPGSIIVGIDFDCRERMVYWTDVAG------------RSISRASLEGAEPETIVNS 1065 (1289)
T ss_pred cceEEEeecCcchhchhhhhceEecccceeeeeecccccceEEEeecCC------------CccccccccCCCCceeecc
Confidence 36788888866 3322 2222 3455677766666776665543 3567777777776665443
Q ss_pred CCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecc-ccccccee
Q 005240 228 PPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLD-LRFRSVSW 306 (706)
Q Consensus 228 ~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~-~~~~~~~w 306 (706)
... .| .|+ .+.|+ ++. +||... +.++|-+.-+ +|.+.+.|...+ .....++.
T Consensus 1066 ~L~--SP-------EGi-AVDh~--~Rn-~ywtDS-----------~lD~IevA~L---dG~~rkvLf~tdLVNPR~iv~ 1118 (1289)
T KOG1214|consen 1066 GLI--SP-------EGI-AVDHI--RRN-MYWTDS-----------VLDKIEVALL---DGSERKVLFYTDLVNPRAIVV 1118 (1289)
T ss_pred cCC--Cc-------cce-eeeec--cce-eeeecc-----------ccchhheeec---CCceeeEEEeecccCcceEEe
Confidence 321 11 111 23333 333 776621 1223444444 666667776443 33445555
Q ss_pred cCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCccc
Q 005240 307 CDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFE 347 (706)
Q Consensus 307 spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~ 347 (706)
-+=+..|+|+.|.. .+..|-..++++ ..-+.|...++.
T Consensus 1119 D~~rgnLYwtDWnR-enPkIets~mDG--~NrRilin~Dig 1156 (1289)
T KOG1214|consen 1119 DPIRGNLYWTDWNR-ENPKIETSSMDG--ENRRILINTDIG 1156 (1289)
T ss_pred ecccCceeeccccc-cCCcceeeccCC--ccceEEeecccC
Confidence 55577788877655 355688888887 445666665543
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=87.23 E-value=39 Score=34.87 Aligned_cols=61 Identities=15% Similarity=0.047 Sum_probs=37.4
Q ss_pred ceeeCCCCCeEEEEeeccccccccCCc------eeEEEEEcCCCceeecc--c-C-------CCccccccccceEEecCC
Q 005240 35 FVSWSPDGKRIAFSVRVDEEDNVSSCK------LRVWIADAETGEAKPLF--E-S-------PDICLNAVFGSFVWVNNS 98 (706)
Q Consensus 35 ~~~~SPDG~~laf~~~~~~~~~~~~~~------~~l~~~d~~~g~~~~lt--~-~-------~~~~~~~~~~~~~wSpDg 98 (706)
.+++.+||..++-. ++. ..|+.++.++...+.+. . . .....|.++..++++|||
T Consensus 89 gi~~~~~g~~~is~----------E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG 158 (326)
T PF13449_consen 89 GIAVPPDGSFWISS----------EGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDG 158 (326)
T ss_pred HeEEecCCCEEEEe----------CCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCC
Confidence 56666666544332 344 88999998854333331 1 1 112235568899999999
Q ss_pred cEEEEEe
Q 005240 99 TLLIFTI 105 (706)
Q Consensus 99 ~~l~~~~ 105 (706)
+.|+...
T Consensus 159 ~~l~~~~ 165 (326)
T PF13449_consen 159 RTLFAAM 165 (326)
T ss_pred CEEEEEE
Confidence 9777664
|
|
| >COG4814 Uncharacterized protein with an alpha/beta hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.71 E-value=5.3 Score=38.47 Aligned_cols=54 Identities=13% Similarity=0.126 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCC-----ceeEEEeccCCCC
Q 005240 583 VSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH-----LFCCGIARSGSYN 638 (706)
Q Consensus 583 ~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~-----~~~a~v~~~~~~d 638 (706)
..=+..++.||.++..+ .++-+.||||||......+..+.+ .++-.|+.++.++
T Consensus 119 s~wlk~~msyL~~~Y~i--~k~n~VGhSmGg~~~~~Y~~~yg~dks~P~lnK~V~l~gpfN 177 (288)
T COG4814 119 SKWLKKAMSYLQKHYNI--PKFNAVGHSMGGLGLTYYMIDYGDDKSLPPLNKLVSLAGPFN 177 (288)
T ss_pred HHHHHHHHHHHHHhcCC--ceeeeeeeccccHHHHHHHHHhcCCCCCcchhheEEeccccc
Confidence 34455788899888666 578999999999999888877632 3566666666655
|
|
| >PLN02408 phospholipase A1 | Back alignment and domain information |
|---|
Probab=86.56 E-value=1.2 Score=45.89 Aligned_cols=38 Identities=16% Similarity=0.288 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHh
Q 005240 585 SAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAH 622 (706)
Q Consensus 585 D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~ 622 (706)
.+...|+.++++..-.+.+|.|.|||+||.||..++..
T Consensus 183 qVl~eI~~ll~~y~~~~~sI~vTGHSLGGALAtLaA~d 220 (365)
T PLN02408 183 MVREEIARLLQSYGDEPLSLTITGHSLGAALATLTAYD 220 (365)
T ss_pred HHHHHHHHHHHhcCCCCceEEEeccchHHHHHHHHHHH
Confidence 34444555555432223479999999999999888754
|
|
| >KOG1282 consensus Serine carboxypeptidases (lysosomal cathepsin A) [Posttranslational modification, protein turnover, chaperones; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.55 E-value=9.5 Score=40.88 Aligned_cols=148 Identities=11% Similarity=0.044 Sum_probs=76.3
Q ss_pred EEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCc---hHHHHHHH-CCeEEE
Q 005240 484 MIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTP---TSSLIFLA-RRFAVL 559 (706)
Q Consensus 484 ~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~-~G~~v~ 559 (706)
.+.+....+..+..|++.-.. ++.. -|+||++-|||=++.-.+-..-.||......+. ...-.|.+ ....-|
T Consensus 48 Yv~v~~~~~~~LFYwf~eS~~-~P~~---dPlvLWLnGGPGCSSl~G~~~E~GPf~v~~~G~tL~~N~ySWnk~aNiLfL 123 (454)
T KOG1282|consen 48 YVTVNESEGRQLFYWFFESEN-NPET---DPLVLWLNGGPGCSSLGGLFEENGPFRVKYNGKTLYLNPYSWNKEANILFL 123 (454)
T ss_pred eEECCCCCCceEEEEEEEccC-CCCC---CCEEEEeCCCCCccchhhhhhhcCCeEEcCCCCcceeCCccccccccEEEE
Confidence 444454567889999987654 3333 489999999986542221111122222211100 00001222 222223
Q ss_pred E-cCCCCcCCCCCCCCch-----hhHHHHHHHHHHH-HHHHHHcCCCCCCcEEEEEechHHHHHHHH----HHhC-----
Q 005240 560 A-GPSIPIIGEGDKLPND-----RFVEQLVSSAEAA-VEEVVRRGVADPSRIAVGGHSYGAFMTAHL----LAHA----- 623 (706)
Q Consensus 560 ~-~~~~~~~g~g~~~~~~-----~~~~~~~~D~~~~-~~~l~~~~~id~~~i~i~G~S~GG~~a~~~----~~~~----- 623 (706)
. |-+ .|+ ++... .--+...+|.-.+ ++|+.+-+.--.+...|.|-||+|+-+-.+ .-.+
T Consensus 124 d~PvG---vGF--SYs~~~~~~~~~D~~~A~d~~~FL~~wf~kfPey~~~~fyI~GESYAG~YVP~La~~I~~~N~~~~~ 198 (454)
T KOG1282|consen 124 DQPVG---VGF--SYSNTSSDYKTGDDGTAKDNYEFLQKWFEKFPEYKSNDFYIAGESYAGHYVPALAQEILKGNKKCCK 198 (454)
T ss_pred ecCCc---CCc--cccCCCCcCcCCcHHHHHHHHHHHHHHHHhChhhcCCCeEEecccccceehHHHHHHHHhccccccC
Confidence 3 222 232 22211 1112334555444 457766544445789999999999654444 3333
Q ss_pred C-CceeEEEeccCCCCCC
Q 005240 624 P-HLFCCGIARSGSYNKT 640 (706)
Q Consensus 624 p-~~~~a~v~~~~~~d~~ 640 (706)
| --+++.+...|+.|..
T Consensus 199 ~~iNLkG~~IGNg~td~~ 216 (454)
T KOG1282|consen 199 PNINLKGYAIGNGLTDPE 216 (454)
T ss_pred CcccceEEEecCcccCcc
Confidence 1 1488999999988744
|
|
| >cd00519 Lipase_3 Lipase (class 3) | Back alignment and domain information |
|---|
Probab=86.06 E-value=1.7 Score=42.36 Aligned_cols=53 Identities=15% Similarity=0.125 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhC-----CCceeEEEeccC
Q 005240 581 QLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHA-----PHLFCCGIARSG 635 (706)
Q Consensus 581 ~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~-----p~~~~a~v~~~~ 635 (706)
....++...++.++++. ...+|.+.|||+||.+|..++..- +..+.+..-.+|
T Consensus 109 ~~~~~~~~~~~~~~~~~--p~~~i~vtGHSLGGaiA~l~a~~l~~~~~~~~i~~~tFg~P 166 (229)
T cd00519 109 SLYNQVLPELKSALKQY--PDYKIIVTGHSLGGALASLLALDLRLRGPGSDVTVYTFGQP 166 (229)
T ss_pred HHHHHHHHHHHHHHhhC--CCceEEEEccCHHHHHHHHHHHHHHhhCCCCceEEEEeCCC
Confidence 34455555555555442 236899999999999998887652 234555544444
|
Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site. |
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=85.78 E-value=2.2 Score=46.80 Aligned_cols=114 Identities=11% Similarity=0.128 Sum_probs=65.0
Q ss_pred ceEEEEcc-CC-CceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCC
Q 005240 157 AQLVLGSL-DG-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDI 233 (706)
Q Consensus 157 ~~l~~~~l-~g-~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~ 233 (706)
+.|-++|| .+ ..+.|+.. .....+.|.|=|.+.+-.+.. .++.+||...+........ .
T Consensus 92 gtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStd-------------td~~iwD~Rk~Gc~~~~~s-~---- 153 (825)
T KOG0267|consen 92 GTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTD-------------TDLKIWDIRKKGCSHTYKS-H---- 153 (825)
T ss_pred CceeeeehhhhhhhhhhhccccCcceeeeccceEEecccccc-------------ccceehhhhccCceeeecC-C----
Confidence 57888899 55 56777766 566788899999887433322 4677888762222111111 0
Q ss_pred CcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCc-eEEeecccccccceecCCCc
Q 005240 234 PVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP-EILHKLDLRFRSVSWCDDSL 311 (706)
Q Consensus 234 p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~-~~l~~~~~~~~~~~wspDg~ 311 (706)
..+++-+.++|||+. ++ ++++.. .+.+||+ .-|++ .......+.+..+.+.|-.-
T Consensus 154 -------~~vv~~l~lsP~Gr~-v~-----~g~ed~-------tvki~d~---~agk~~~ef~~~e~~v~sle~hp~e~ 209 (825)
T KOG0267|consen 154 -------TRVVDVLRLSPDGRW-VA-----SGGEDN-------TVKIWDL---TAGKLSKEFKSHEGKVQSLEFHPLEV 209 (825)
T ss_pred -------cceeEEEeecCCCce-ee-----ccCCcc-------eeeeecc---cccccccccccccccccccccCchhh
Confidence 123456799999985 32 333321 3667776 22332 22233456666666666543
|
|
| >PLN02571 triacylglycerol lipase | Back alignment and domain information |
|---|
Probab=85.71 E-value=1.4 Score=46.06 Aligned_cols=37 Identities=22% Similarity=0.255 Sum_probs=24.2
Q ss_pred HHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHh
Q 005240 586 AEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAH 622 (706)
Q Consensus 586 ~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~ 622 (706)
+...++.++++..-..-+|.|+|||+||.||+.++..
T Consensus 210 vl~eV~~L~~~y~~e~~sI~VTGHSLGGALAtLaA~d 246 (413)
T PLN02571 210 VLNEVGRLVEKYKDEEISITICGHSLGAALATLNAVD 246 (413)
T ss_pred HHHHHHHHHHhcCcccccEEEeccchHHHHHHHHHHH
Confidence 3344444544321112379999999999999888754
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=85.57 E-value=13 Score=40.12 Aligned_cols=146 Identities=10% Similarity=0.018 Sum_probs=86.7
Q ss_pred cceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeecccccc-ccCCceeEEEEEcCCCceeecccCCCc
Q 005240 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDN-VSSCKLRVWIADAETGEAKPLFESPDI 83 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~-~~~~~~~l~~~d~~~g~~~~lt~~~~~ 83 (706)
.||-+..+.. ++...+..+-+....-.+.||-...+..++.... .+ .++...+-.+++...++.+++.-. .-
T Consensus 184 aNl~L~~~~~----~klEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s--~s~~g~~~~d~ciYE~~r~klqrvsvt-si 256 (545)
T PF11768_consen 184 ANLHLLSCSG----GKLEVLSYIRTENDPLDVEFSLNQPYQIHTVEQS--ISVKGEPSADSCIYECSRNKLQRVSVT-SI 256 (545)
T ss_pred ccEEEEEecC----CcEEEEEEEEecCCcEEEEccCCCCcEEEEEEEe--cCCCCCceeEEEEEEeecCceeEEEEE-EE
Confidence 4677777765 7777765444444566788888555555655310 00 012223344555555666555211 11
Q ss_pred cccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEc
Q 005240 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (706)
Q Consensus 84 ~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~ 163 (706)
.+...+...+++|+.++|+....+ +.|.++|
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~D-------------------------------------------------gSiiLyD 287 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCED-------------------------------------------------GSIILYD 287 (545)
T ss_pred ecCCcceEEecCcccceEEEEecC-------------------------------------------------CeEEEEE
Confidence 123336688999999998876421 5677778
Q ss_pred cCCCceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCC
Q 005240 164 LDGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK 219 (706)
Q Consensus 164 l~g~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 219 (706)
.+-+.+.++.. -.+.-++|.|||..+++.+..+ ++.+||+.-+
T Consensus 288 ~~~~~t~~~ka~~~P~~iaWHp~gai~~V~s~qG-------------elQ~FD~ALs 331 (545)
T PF11768_consen 288 TTRGVTLLAKAEFIPTLIAWHPDGAIFVVGSEQG-------------ELQCFDMALS 331 (545)
T ss_pred cCCCeeeeeeecccceEEEEcCCCcEEEEEcCCc-------------eEEEEEeecC
Confidence 74434444333 3456889999998887666543 7888887633
|
|
| >PRK10252 entF enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=85.55 E-value=3.2 Score=52.08 Aligned_cols=75 Identities=9% Similarity=0.022 Sum_probs=46.0
Q ss_pred HCCeEEEEcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHh---CCCceeE
Q 005240 553 ARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAH---APHLFCC 629 (706)
Q Consensus 553 ~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~---~p~~~~a 629 (706)
..++.|+..... |.+.........+...+++.+.++.+. . ..+..+.|||+||.++..++.+ .++++..
T Consensus 1092 ~~~~~v~~~~~~---g~~~~~~~~~~l~~la~~~~~~i~~~~----~-~~p~~l~G~S~Gg~vA~e~A~~l~~~~~~v~~ 1163 (1296)
T PRK10252 1092 DPQWSIYGIQSP---RPDGPMQTATSLDEVCEAHLATLLEQQ----P-HGPYHLLGYSLGGTLAQGIAARLRARGEEVAF 1163 (1296)
T ss_pred CCCCcEEEEECC---CCCCCCCCCCCHHHHHHHHHHHHHhhC----C-CCCEEEEEechhhHHHHHHHHHHHHcCCceeE
Confidence 346777663332 333222223345566666665554331 1 2479999999999999999875 4677777
Q ss_pred EEeccC
Q 005240 630 GIARSG 635 (706)
Q Consensus 630 ~v~~~~ 635 (706)
++...+
T Consensus 1164 l~l~~~ 1169 (1296)
T PRK10252 1164 LGLLDT 1169 (1296)
T ss_pred EEEecC
Confidence 776554
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=85.22 E-value=2.6 Score=46.23 Aligned_cols=79 Identities=15% Similarity=0.110 Sum_probs=46.2
Q ss_pred ceeEeecCCCCCCCCeeeeecCCCCC-cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCcc
Q 005240 6 GIGIHRLLPDDSLGPEKEVHGYPDGA-KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (706)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~i~~~~~~~-~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~ 84 (706)
.|+++||.+ ++ .+..|..+. ....+.|+|=|.+.|--+. + .++-++|..-.-+.....+.
T Consensus 93 tiK~wDlee----Ak--~vrtLtgh~~~~~sv~f~P~~~~~a~gSt--------d--td~~iwD~Rk~Gc~~~~~s~--- 153 (825)
T KOG0267|consen 93 TIKVWDLEE----AK--IVRTLTGHLLNITSVDFHPYGEFFASGST--------D--TDLKIWDIRKKGCSHTYKSH--- 153 (825)
T ss_pred ceeeeehhh----hh--hhhhhhccccCcceeeeccceEEeccccc--------c--ccceehhhhccCceeeecCC---
Confidence 588999965 43 333444442 4677889999988744322 2 44555555422222222111
Q ss_pred ccccccceEEecCCcEEEEE
Q 005240 85 LNAVFGSFVWVNNSTLLIFT 104 (706)
Q Consensus 85 ~~~~~~~~~wSpDg~~l~~~ 104 (706)
...+..+.++|||++++..
T Consensus 154 -~~vv~~l~lsP~Gr~v~~g 172 (825)
T KOG0267|consen 154 -TRVVDVLRLSPDGRWVASG 172 (825)
T ss_pred -cceeEEEeecCCCceeecc
Confidence 1136788999999988854
|
|
| >KOG3724 consensus Negative regulator of COPII vesicle formation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.16 E-value=1.6 Score=48.54 Aligned_cols=51 Identities=16% Similarity=0.219 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHHHHHHHHc--C---C--CCCCcEEEEEechHHHHHHHHHHhCCCceeE
Q 005240 578 FVEQLVSSAEAAVEEVVRR--G---V--ADPSRIAVGGHSYGAFMTAHLLAHAPHLFCC 629 (706)
Q Consensus 578 ~~~~~~~D~~~~~~~l~~~--~---~--id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a 629 (706)
...+..+-+.+||+++.+. + + --|..|++.||||||..|..+++.. +....
T Consensus 151 ~l~dQtEYV~dAIk~ILslYr~~~e~~~p~P~sVILVGHSMGGiVAra~~tlk-n~~~~ 208 (973)
T KOG3724|consen 151 ILLDQTEYVNDAIKYILSLYRGEREYASPLPHSVILVGHSMGGIVARATLTLK-NEVQG 208 (973)
T ss_pred hHHHHHHHHHHHHHHHHHHhhcccccCCCCCceEEEEeccchhHHHHHHHhhh-hhccc
Confidence 3444566667777777763 2 1 2377899999999999998877664 43333
|
|
| >PF04083 Abhydro_lipase: Partial alpha/beta-hydrolase lipase region; InterPro: IPR006693 The alpha/beta hydrolase fold is common to several hydrolytic enzymes of widely differing phylogenetic origin and catalytic function | Back alignment and domain information |
|---|
Probab=84.99 E-value=3.8 Score=30.44 Aligned_cols=44 Identities=16% Similarity=0.086 Sum_probs=24.6
Q ss_pred CCceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCC
Q 005240 479 SLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPE 522 (706)
Q Consensus 479 ~~~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg 522 (706)
....|+..+.+.||.-+..+-+.++.-......+.|.|++.||=
T Consensus 9 GY~~E~h~V~T~DGYiL~l~RIp~~~~~~~~~~~k~pVll~HGL 52 (63)
T PF04083_consen 9 GYPCEEHEVTTEDGYILTLHRIPPGKNSSNQNKKKPPVLLQHGL 52 (63)
T ss_dssp T---EEEEEE-TTSEEEEEEEE-SBTTCTTTTTT--EEEEE--T
T ss_pred CCCcEEEEEEeCCCcEEEEEEccCCCCCcccCCCCCcEEEECCc
Confidence 45789999999999999888886665211222345778889983
|
The core of each enzyme is similar: an alpha/beta sheet, not barrel, of eight beta-sheets connected by alpha-helices []. This entry represents the N-terminal part of an alpha/beta hydrolase domain found in a number of lipases.; GO: 0006629 lipid metabolic process; PDB: 1K8Q_B 1HLG_B. |
| >KOG2931 consensus Differentiation-related gene 1 protein (NDR1 protein), related proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=84.83 E-value=26 Score=34.79 Aligned_cols=133 Identities=14% Similarity=0.113 Sum_probs=79.3
Q ss_pred eEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCC-chHHHHHHHCCeEEEE
Q 005240 482 KEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMT-PTSSLIFLARRFAVLA 560 (706)
Q Consensus 482 ~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~G~~v~~ 560 (706)
.++-.+.+..| .++..++--++ ++.|+||-.|.=+- ... .-|...+ ...++.+..+ |.|+-
T Consensus 22 ~~e~~V~T~~G-~v~V~V~Gd~~------~~kpaiiTyhDlgl--------N~~--scFq~ff~~p~m~ei~~~-fcv~H 83 (326)
T KOG2931|consen 22 CQEHDVETAHG-VVHVTVYGDPK------GNKPAIITYHDLGL--------NHK--SCFQGFFNFPDMAEILEH-FCVYH 83 (326)
T ss_pred ceeeeeccccc-cEEEEEecCCC------CCCceEEEeccccc--------chH--hHhHHhhcCHhHHHHHhh-eEEEe
Confidence 44555555445 67777775432 12478888885211 110 1121111 2334556666 77765
Q ss_pred cCCCCcCCCCCCCCch---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCC
Q 005240 561 GPSIPIIGEGDKLPND---RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSY 637 (706)
Q Consensus 561 ~~~~~~~g~g~~~~~~---~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~ 637 (706)
++..|..--...+..+ ..+++..+++..+++++. =+-|.-+|--.|+++-...|..+|+++-++|+..+..
T Consensus 84 V~~PGqe~gAp~~p~~y~yPsmd~LAd~l~~VL~~f~------lk~vIg~GvGAGAyIL~rFAl~hp~rV~GLvLIn~~~ 157 (326)
T KOG2931|consen 84 VDAPGQEDGAPSFPEGYPYPSMDDLADMLPEVLDHFG------LKSVIGMGVGAGAYILARFALNHPERVLGLVLINCDP 157 (326)
T ss_pred cCCCccccCCccCCCCCCCCCHHHHHHHHHHHHHhcC------cceEEEecccccHHHHHHHHhcChhheeEEEEEecCC
Confidence 3332110001112221 246677777888777762 2568899999999999999999999999999998765
Q ss_pred C
Q 005240 638 N 638 (706)
Q Consensus 638 d 638 (706)
.
T Consensus 158 ~ 158 (326)
T KOG2931|consen 158 C 158 (326)
T ss_pred C
Confidence 4
|
|
| >PF10605 3HBOH: 3HB-oligomer hydrolase (3HBOH) ; InterPro: IPR016582 This entry represents a group of predicted D-(-)-3-hydroxybutyrate oligomer hydrolases (also known as 3HB-oligomer hydrolase), which function in the degradation of poly-3-hydroxybutyrate (PHB) | Back alignment and domain information |
|---|
Probab=84.81 E-value=35 Score=37.49 Aligned_cols=40 Identities=10% Similarity=-0.012 Sum_probs=31.6
Q ss_pred CcEEEEEechHHHHHHHHHHhCCC-ceeEEEeccCCCCCCC
Q 005240 602 SRIAVGGHSYGAFMTAHLLAHAPH-LFCCGIARSGSYNKTL 641 (706)
Q Consensus 602 ~~i~i~G~S~GG~~a~~~~~~~p~-~~~a~v~~~~~~d~~~ 641 (706)
..|+..+.|-||..++.++-++-+ ++.+++..-|..+...
T Consensus 285 T~VIAssvSNGGgAal~AAEqD~~glIdgVvv~EP~v~~~~ 325 (690)
T PF10605_consen 285 TLVIASSVSNGGGAALAAAEQDTQGLIDGVVVSEPNVNLPP 325 (690)
T ss_pred eEEEEEeecCccHHHHhHhhcccCCceeeEEecCCccCCCC
Confidence 357778999999999999988744 6888888888776553
|
These enzymes catalyse the hydrolysis of D(-)-3-hydroxybutyrate oligomers (3HB-oligomers) into 3HB-monomers [, ].; GO: 0047989 hydroxybutyrate-dimer hydrolase activity, 0019605 butyrate metabolic process, 0005615 extracellular space |
| >PRK13613 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=84.74 E-value=17 Score=40.84 Aligned_cols=67 Identities=13% Similarity=0.236 Sum_probs=40.8
Q ss_pred CCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccc-cccceEEecCCcEEEEEec
Q 005240 29 DGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNA-VFGSFVWVNNSTLLIFTIP 106 (706)
Q Consensus 29 ~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~-~~~~~~wSpDg~~l~~~~~ 106 (706)
++.....|.|.++| +|. +... +..+..-|++... +|+...+.. . .+.+ .+..+..|+||-++++...
T Consensus 407 ~~~~Lt~PS~d~~g-~vW-tvd~-----~~~~~~vl~v~~~-~G~~~~V~~-~--~l~g~~I~~lrvSrDG~RvAvv~~ 474 (599)
T PRK13613 407 ADGRLTSPSWDGRG-DLW-VVDR-----DPADPRLLWLLQG-DGEPVEVRT-P--ELDGHRVVAVRVARDGVRVALIVE 474 (599)
T ss_pred ccCcccCCcCcCCC-CEE-EecC-----CCCCceEEEEEcC-CCcEEEeec-c--ccCCCEeEEEEECCCccEEEEEEe
Confidence 44468899999998 664 3321 1122223666654 566554432 1 2222 4889999999999888754
|
|
| >COG1075 LipA Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.72 E-value=2.1 Score=44.34 Aligned_cols=37 Identities=14% Similarity=0.161 Sum_probs=32.3
Q ss_pred CCcEEEEEechHHHHHHHHHHhCC--CceeEEEeccCCC
Q 005240 601 PSRIAVGGHSYGAFMTAHLLAHAP--HLFCCGIARSGSY 637 (706)
Q Consensus 601 ~~~i~i~G~S~GG~~a~~~~~~~p--~~~~a~v~~~~~~ 637 (706)
..+|.+.||||||.++.+++...+ .+++..+..++..
T Consensus 126 a~~v~LigHS~GG~~~ry~~~~~~~~~~V~~~~tl~tp~ 164 (336)
T COG1075 126 AKKVNLIGHSMGGLDSRYYLGVLGGANRVASVVTLGTPH 164 (336)
T ss_pred CCceEEEeecccchhhHHHHhhcCccceEEEEEEeccCC
Confidence 379999999999999999998887 7899998888653
|
|
| >PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function | Back alignment and domain information |
|---|
Probab=84.62 E-value=13 Score=41.13 Aligned_cols=34 Identities=24% Similarity=0.172 Sum_probs=24.5
Q ss_pred EEEEcc-CCCceecCCC---ceEeeeeeCCCCcEEEEE
Q 005240 159 LVLGSL-DGTAKDFGTP---AVYTAVEPSPDQKYVLIT 192 (706)
Q Consensus 159 l~~~~l-~g~~~~lt~~---~~~~~~~~SpDG~~i~~~ 192 (706)
++..+. .|+++++... ..+..+.|+|||+.|++.
T Consensus 482 ~~~~~~~~g~~~rf~~~P~gaE~tG~~fspDg~tlFvn 519 (524)
T PF05787_consen 482 VWAYDPDTGELKRFLVGPNGAEITGPCFSPDGRTLFVN 519 (524)
T ss_pred eeeccccccceeeeccCCCCcccccceECCCCCEEEEE
Confidence 445555 5577776544 578899999999998654
|
|
| >COG3946 VirJ Type IV secretory pathway, VirJ component [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=84.55 E-value=2.9 Score=42.97 Aligned_cols=68 Identities=18% Similarity=0.211 Sum_probs=48.8
Q ss_pred cCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHH
Q 005240 540 FSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFM 615 (706)
Q Consensus 540 ~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~ 615 (706)
|..........|.++|+-|+-.+... -|.....-++...|+...+++..++ ....|+.++|.|+|+=+
T Consensus 272 Wr~lDk~v~~~l~~~gvpVvGvdsLR------YfW~~rtPe~~a~Dl~r~i~~y~~~--w~~~~~~liGySfGADv 339 (456)
T COG3946 272 WRDLDKEVAEALQKQGVPVVGVDSLR------YFWSERTPEQIAADLSRLIRFYARR--WGAKRVLLIGYSFGADV 339 (456)
T ss_pred hhhhhHHHHHHHHHCCCceeeeehhh------hhhccCCHHHHHHHHHHHHHHHHHh--hCcceEEEEeecccchh
Confidence 33344567788999999998644431 1333344567788999999988775 34689999999999744
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=84.26 E-value=66 Score=35.34 Aligned_cols=60 Identities=17% Similarity=0.121 Sum_probs=40.5
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeec--ccCCCccccccccceEEecCCcEEEEEe
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPL--FESPDICLNAVFGSFVWVNNSTLLIFTI 105 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l--t~~~~~~~~~~~~~~~wSpDg~~l~~~~ 105 (706)
-+.+.+|-| |+.+.... .|...+..+|+++++..-. ..+.. +.+.+..++|+...++++.
T Consensus 102 AifDl~wap-ge~~lVsa---------sGDsT~r~Wdvk~s~l~G~~~~~GH~----~SvkS~cf~~~n~~vF~tG 163 (720)
T KOG0321|consen 102 AIFDLKWAP-GESLLVSA---------SGDSTIRPWDVKTSRLVGGRLNLGHT----GSVKSECFMPTNPAVFCTG 163 (720)
T ss_pred eeEeeccCC-CceeEEEc---------cCCceeeeeeeccceeecceeecccc----cccchhhhccCCCcceeec
Confidence 456789999 77665543 5667888888888776544 22221 2367888999888777664
|
|
| >PLN02324 triacylglycerol lipase | Back alignment and domain information |
|---|
Probab=84.19 E-value=1.9 Score=45.18 Aligned_cols=36 Identities=22% Similarity=0.301 Sum_probs=24.4
Q ss_pred HHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHH
Q 005240 586 AEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLA 621 (706)
Q Consensus 586 ~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~ 621 (706)
+...|..|+++..-..-+|.|+|||+||.||+.++.
T Consensus 199 Vl~eV~~L~~~Yp~e~~sItvTGHSLGGALAtLaA~ 234 (415)
T PLN02324 199 VQGELKRLLELYKNEEISITFTGHSLGAVMSVLSAA 234 (415)
T ss_pred HHHHHHHHHHHCCCCCceEEEecCcHHHHHHHHHHH
Confidence 334455555543211248999999999999988875
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=84.12 E-value=45 Score=32.83 Aligned_cols=55 Identities=18% Similarity=0.021 Sum_probs=33.6
Q ss_pred cCccceeeeecCCCCCCCCceEEeec----------------ccccccceecCCCceEEEEeeccccceEEEEEcCC
Q 005240 272 VSPRDIIYTQPAEPAEGEKPEILHKL----------------DLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPG 332 (706)
Q Consensus 272 ~~~~~~l~~~d~~~~~~~~~~~l~~~----------------~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~ 332 (706)
++..+.|.++|. ++|++...... ..-...++|.|++..|+.+. + .+..+|.+.+.
T Consensus 191 VW~td~I~~Idp---~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG--K-~Wp~lyeV~l~ 261 (264)
T PF05096_consen 191 VWQTDRIVRIDP---ETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG--K-LWPKLYEVKLV 261 (264)
T ss_dssp ETTSSEEEEEET---TT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE--T-T-SEEEEEEEE
T ss_pred eCCCCeEEEEeC---CCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe--C-CCCceEEEEEE
Confidence 455667888888 77776653211 12356788988888777753 2 56778877643
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.11 E-value=39 Score=37.98 Aligned_cols=60 Identities=22% Similarity=0.308 Sum_probs=37.3
Q ss_pred eeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCC
Q 005240 23 EVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNS 98 (706)
Q Consensus 23 ~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg 98 (706)
.+++.+....-..+-|||.| .|||.+ ..-+.++|.-+-+..|....+.. .+..+.|+|--
T Consensus 8 tlpG~l~~sN~~A~Dw~~~G-LiAygs-----------hslV~VVDs~s~q~iqsie~h~s----~V~~VrWap~~ 67 (1062)
T KOG1912|consen 8 TLPGPLSRSNRNAADWSPSG-LIAYGS-----------HSLVSVVDSRSLQLIQSIELHQS----AVTSVRWAPAP 67 (1062)
T ss_pred cCCCCCCcccccccccCccc-eEEEec-----------CceEEEEehhhhhhhhccccCcc----ceeEEEeccCC
Confidence 34444433356677899976 899954 46788898766554444322221 26788898754
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=83.60 E-value=30 Score=37.71 Aligned_cols=152 Identities=16% Similarity=0.200 Sum_probs=0.0
Q ss_pred ccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccC---
Q 005240 89 FGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD--- 165 (706)
Q Consensus 89 ~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~--- 165 (706)
+..++|. ||+.++.+ .|+..+-.
T Consensus 22 vhGlaWT-DGkqVvLT-----------------------------------------------------~L~l~~gE~kf 47 (671)
T PF15390_consen 22 VHGLAWT-DGKQVVLT-----------------------------------------------------DLQLHNGEPKF 47 (671)
T ss_pred ccceEec-CCCEEEEE-----------------------------------------------------eeeeeCCcccc
Q ss_pred CCceecCCCceEeeeeeCCCC-----cEEEEEeeccCcccccccccccceEEEEecC---CCeeEEcccCCCCCCCCccc
Q 005240 166 GTAKDFGTPAVYTAVEPSPDQ-----KYVLITSMHRPYSYKVPCARFSQKVQVWTTD---GKLVRELCDLPPAEDIPVCY 237 (706)
Q Consensus 166 g~~~~lt~~~~~~~~~~SpDG-----~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~l~~~~~~~~~p~~~ 237 (706)
|..+.+.....+.++.|+|-+ ..||+.... .+-+|-+. ...-+.+..-.-.-..|+..
T Consensus 48 Gds~viGqFEhV~GlsW~P~~~~~~paLLAVQHkk--------------hVtVWqL~~s~~e~~K~l~sQtcEi~e~~pv 113 (671)
T PF15390_consen 48 GDSKVIGQFEHVHGLSWAPPCTADTPALLAVQHKK--------------HVTVWQLCPSTTERNKLLMSQTCEIREPFPV 113 (671)
T ss_pred CCccEeeccceeeeeeecCcccCCCCceEEEeccc--------------eEEEEEeccCccccccceeeeeeeccCCccc
Q ss_pred CccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEe
Q 005240 238 NSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNET 317 (706)
Q Consensus 238 ~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~ 317 (706)
- +....|.|...- |.+....+-.--.. +.. ++..++.=.+..+.+--..|.+||.+|+.+.
T Consensus 114 L-----pQGCVWHPk~~i-L~VLT~~dvSV~~s-------V~~------d~srVkaDi~~~G~IhCACWT~DG~RLVVAv 174 (671)
T PF15390_consen 114 L-----PQGCVWHPKKAI-LTVLTARDVSVLPS-------VHC------DSSRVKADIKTSGLIHCACWTKDGQRLVVAV 174 (671)
T ss_pred C-----CCcccccCCCce-EEEEecCceeEeee-------eee------CCceEEEeccCCceEEEEEecCcCCEEEEEe
Q ss_pred eccccceEEEEEc
Q 005240 318 WYKTSQTRTWLVC 330 (706)
Q Consensus 318 ~~~~~~~~l~~~d 330 (706)
+...+-|++|
T Consensus 175 ---GSsLHSyiWd 184 (671)
T PF15390_consen 175 ---GSSLHSYIWD 184 (671)
T ss_pred ---CCeEEEEEec
|
|
| >TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular | Back alignment and domain information |
|---|
Probab=83.45 E-value=5.8 Score=41.93 Aligned_cols=85 Identities=13% Similarity=0.054 Sum_probs=51.3
Q ss_pred hHHHHHHHCCeEEEEcCCCCcCCCC----CCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHH
Q 005240 546 TSSLIFLARRFAVLAGPSIPIIGEG----DKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLA 621 (706)
Q Consensus 546 ~~~~~l~~~G~~v~~~~~~~~~g~g----~~~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~ 621 (706)
...+.|.+ |+.|+..+-. ..+.- ..+.-+++ +.-+..+++++ .++ +-++|.|+||.+++.+++
T Consensus 121 S~V~~Ll~-g~dVYl~DW~-~p~~vp~~~~~f~ldDY----i~~l~~~i~~~------G~~-v~l~GvCqgG~~~laa~A 187 (406)
T TIGR01849 121 STVEALLP-DHDVYITDWV-NARMVPLSAGKFDLEDY----IDYLIEFIRFL------GPD-IHVIAVCQPAVPVLAAVA 187 (406)
T ss_pred HHHHHHhC-CCcEEEEeCC-CCCCCchhcCCCCHHHH----HHHHHHHHHHh------CCC-CcEEEEchhhHHHHHHHH
Confidence 34566777 9999873321 11100 11111223 32333444433 334 999999999999776654
Q ss_pred hC-----CCceeEEEeccCCCCCCCCC
Q 005240 622 HA-----PHLFCCGIARSGSYNKTLTP 643 (706)
Q Consensus 622 ~~-----p~~~~a~v~~~~~~d~~~~~ 643 (706)
.. |.+++.++.+++..|....|
T Consensus 188 l~a~~~~p~~~~sltlm~~PID~~~~p 214 (406)
T TIGR01849 188 LMAENEPPAQPRSMTLMGGPIDARASP 214 (406)
T ss_pred HHHhcCCCCCcceEEEEecCccCCCCC
Confidence 43 56799999999988866543
|
This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some |
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=83.36 E-value=36 Score=33.27 Aligned_cols=85 Identities=12% Similarity=-0.003 Sum_probs=47.5
Q ss_pred EeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCC-CceeecccCCCc-ccc
Q 005240 9 IHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAET-GEAKPLFESPDI-CLN 86 (706)
Q Consensus 9 ~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~-g~~~~lt~~~~~-~~~ 86 (706)
++|+.+ ++.+.+. +..+...+.-.+-|||+.|...... ++...+.+++..+ ...-..+..... ...
T Consensus 50 ~yD~~t----n~~rpl~-v~td~FCSgg~~L~dG~ll~tGG~~-------~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~ 117 (243)
T PF07250_consen 50 EYDPNT----NTFRPLT-VQTDTFCSGGAFLPDGRLLQTGGDN-------DGNKAIRIFTPCTSDGTCDWTESPNDMQSG 117 (243)
T ss_pred EEecCC----CcEEecc-CCCCCcccCcCCCCCCCEEEeCCCC-------ccccceEEEecCCCCCCCCceECcccccCC
Confidence 567766 8888886 5667778888999999998664321 3445555565443 111111111111 001
Q ss_pred ccccceEEecCCcEEEEEe
Q 005240 87 AVFGSFVWVNNSTLLIFTI 105 (706)
Q Consensus 87 ~~~~~~~wSpDg~~l~~~~ 105 (706)
.-+....--|||+.|+...
T Consensus 118 RWYpT~~~L~DG~vlIvGG 136 (243)
T PF07250_consen 118 RWYPTATTLPDGRVLIVGG 136 (243)
T ss_pred CccccceECCCCCEEEEeC
Confidence 1122334458999888763
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >PLN02802 triacylglycerol lipase | Back alignment and domain information |
|---|
Probab=82.90 E-value=1.9 Score=46.14 Aligned_cols=39 Identities=23% Similarity=0.308 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHh
Q 005240 584 SSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAH 622 (706)
Q Consensus 584 ~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~ 622 (706)
+++...++.++++..-..-+|.|+|||+||.||..++..
T Consensus 312 eqVl~eV~~Ll~~Y~~e~~sI~VTGHSLGGALAtLaA~d 350 (509)
T PLN02802 312 ESVVGEVRRLMEKYKGEELSITVTGHSLGAALALLVADE 350 (509)
T ss_pred HHHHHHHHHHHHhCCCCcceEEEeccchHHHHHHHHHHH
Confidence 344555555655432122479999999999999887743
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.60 E-value=18 Score=39.93 Aligned_cols=58 Identities=16% Similarity=0.306 Sum_probs=33.7
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEE
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~ 104 (706)
-+.+..|.-||.+|..+-. ...+.+-.++|....-- ...+. ....+.||+|.+.+.|.
T Consensus 117 vV~SmsWn~dG~kIcIvYe----------DGavIVGsvdGNRIwgK-eLkg~----~l~hv~ws~D~~~~Lf~ 174 (1189)
T KOG2041|consen 117 VVVSMSWNLDGTKICIVYE----------DGAVIVGSVDGNRIWGK-ELKGQ----LLAHVLWSEDLEQALFK 174 (1189)
T ss_pred EEEEEEEcCCCcEEEEEEc----------cCCEEEEeeccceecch-hcchh----eccceeecccHHHHHhh
Confidence 3567789999999977532 23455555555432100 00000 13356899999988775
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=82.58 E-value=35 Score=35.34 Aligned_cols=54 Identities=15% Similarity=0.333 Sum_probs=28.8
Q ss_pred ccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCc--cccccccceEEecC
Q 005240 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI--CLNAVFGSFVWVNN 97 (706)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~--~~~~~~~~~~wSpD 97 (706)
...++|.|||+.++- .....||+++.++.....+.....- ....+...++++|+
T Consensus 4 P~~~a~~pdG~l~v~-----------e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~ 59 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVA-----------ERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPD 59 (331)
T ss_dssp EEEEEEETTSCEEEE-----------ETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TT
T ss_pred ceEEEEeCCCcEEEE-----------eCCceEEEEeCCCcCcceecccccccccccCCcccceeccc
Confidence 456899999866543 2247899998444332333322110 11223457788884
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 706 | |||
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 4e-12 | |
| 1vlq_A | 337 | Acetyl xylan esterase; TM0077, structural genomics | 2e-11 | |
| 3doh_A | 380 | Esterase; alpha-beta hydrolase, beta sheet; 2.60A | 4e-11 | |
| 3fcy_A | 346 | Xylan esterase 1; alpha/beta hydrolase, carbohydra | 9e-11 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 1e-10 | |
| 1l7a_A | 318 | Cephalosporin C deacetylase; structural genomics, | 4e-10 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 6e-10 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 8e-10 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 9e-10 | |
| 3ksr_A | 290 | Putative serine hydrolase; catalytic triad, struct | 1e-09 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 4e-09 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 6e-09 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 3e-05 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 8e-09 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 2e-08 | |
| 3c8d_A | 403 | Enterochelin esterase; alpha-beta-alpha sandwich, | 2e-08 | |
| 3mve_A | 415 | FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/ | 1e-07 | |
| 3g8y_A | 391 | SUSD/RAGB-associated esterase-like protein; struct | 7e-07 | |
| 3nuz_A | 398 | Putative acetyl xylan esterase; structural genomic | 2e-06 | |
| 3hlk_A | 446 | Acyl-coenzyme A thioesterase 2, mitochondrial; alp | 3e-06 | |
| 1ufo_A | 238 | Hypothetical protein TT1662; alpha-beta fold, hydr | 3e-06 | |
| 3k2i_A | 422 | Acyl-coenzyme A thioesterase 4; alpha/beta hydrola | 4e-06 | |
| 2jbw_A | 386 | Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine | 6e-06 | |
| 3og9_A | 209 | Protein YAHD A copper inducible hydrolase; alpha/b | 9e-06 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 1e-05 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 3e-04 | |
| 2o2g_A | 223 | Dienelactone hydrolase; YP_324580.1, structural ge | 2e-05 | |
| 2d81_A | 318 | PHB depolymerase; alpha/beta hydrolase fold, circu | 1e-04 | |
| 3fnb_A | 405 | Acylaminoacyl peptidase SMU_737; alpha-beta-alpha | 2e-04 | |
| 2hdw_A | 367 | Hypothetical protein PA2218; alpha/beta hydrolase | 3e-04 | |
| 3h2g_A | 397 | Esterase; xanthomonas oryzae PV. oryzae, cell WALL | 3e-04 | |
| 3gff_A | 331 | IROE-like serine hydrolase; NP_718593.1, structura | 3e-04 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 5e-04 | |
| 2qm0_A | 275 | BES; alpha-beta structure, structural genomics, PS | 5e-04 | |
| 1mpx_A | 615 | Alpha-amino acid ester hydrolase; alpha/beta hydro | 6e-04 |
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A Length = 662 | Back alignment and structure |
|---|
Score = 68.3 bits (167), Expect = 4e-12
Identities = 30/175 (17%), Positives = 48/175 (27%), Gaps = 47/175 (26%)
Query: 483 EMIKYQRKDGVPLTATLYLPPG--YDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEF 540
++ + DG + A +Y P + D P + A+ G P
Sbjct: 392 QIRTFTAPDGREIHAHIYPPHSPDFTGPADELPPYVVMAHG---------GPTSRVPAVL 442
Query: 541 SGMTPTSSLIFLARR-FAVLAGPSIPIIGEGDKLPNDR--------FVEQL--------V 583
+ R V N + E+L V
Sbjct: 443 DLDVA-----YFTSRGIGVAD-------------VNYGGSTGYGRAYRERLRGRWGVVDV 484
Query: 584 SSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYN 638
A + G AD +R+AV G S G + A L ++ CG +
Sbjct: 485 EDCAAVATALAEEGTADRARLAVRGGSAGGWTAASSLVS-TDVYACGTVLYPVLD 538
|
| >1vlq_A Acetyl xylan esterase; TM0077, structural genomics, JCSG, PR structure initiative, PSI, joint center for structural GENO hydrolase; 2.10A {Thermotoga maritima} SCOP: c.69.1.25 PDB: 3m81_A 3m83_A* 3m82_A* Length = 337 | Back alignment and structure |
|---|
Score = 64.9 bits (158), Expect = 2e-11
Identities = 33/213 (15%), Positives = 60/213 (28%), Gaps = 30/213 (14%)
Query: 485 IKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFW--------AYPEDYKSKDAAGQV--- 533
+ + G + L +P ++ LPC+ +P D+ + G +
Sbjct: 71 VTFSGYRGQRIKGWLLVPKL----EEEKLPCVVQYIGYNGGRGFPHDWLFWPSMGYICFV 126
Query: 534 ---RGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAV 590
RG + + P G D P + ++ + A AV
Sbjct: 127 MDTRGQGSGWLKGDTPD----YPEGPVDPQYPGFMTRGILD--PRTYYYRRVFTDAVRAV 180
Query: 591 EEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSG------SYNKTLTPF 644
E D RI + G S G + + A + + T
Sbjct: 181 EAAASFPQVDQERIVIAGGSQGGGIALAVSALSKKAKALLCDVPFLCHFRRAVQLVDTHP 240
Query: 645 GFQAERFFDALKGHGALSRLVLLPFEHHVYAAR 677
+ F + + L F+ +AAR
Sbjct: 241 YAEITNFLKTHRDKEEIVFRTLSYFDGVNFAAR 273
|
| >3doh_A Esterase; alpha-beta hydrolase, beta sheet; 2.60A {Thermotoga maritima} PDB: 3doi_A Length = 380 | Back alignment and structure |
|---|
Score = 64.3 bits (156), Expect = 4e-11
Identities = 37/222 (16%), Positives = 63/222 (28%), Gaps = 36/222 (16%)
Query: 490 KDGVPLTATLYLPPGYDQSKDGPLPCLFW--AYPEDYKSKDAAGQVRGSPNEFSGMTPTS 547
+ GV + L++P + + PL + + E D QV G+ G +
Sbjct: 153 ETGVEIPYRLFVPKDVNPDRKYPL--VVFLHGAGER--GTDNYLQVAGNR----GAVVWA 204
Query: 548 SLIFLARR-FAVLAGPSIPIIG----EGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPS 602
+ VLA P P N E+ + + + +++ D +
Sbjct: 205 QPRYQVVHPCFVLA-PQCPPNSSWSTLFTDRENPFNPEKPLLAVIKIIRKLLDEYNIDEN 263
Query: 603 RIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTL------TPFGF---------- 646
RI + G S G + T + P LF I G + + P
Sbjct: 264 RIYITGLSMGGYGTWTAIMEFPELFAAAIPICGGGDVSKVERIKDIPIWVFHAEDDPVVP 323
Query: 647 --QAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWE 686
+ L G R + H W
Sbjct: 324 VENSRVLVKKLAEIGGKVRYTEYEKGFMEKHGWDP--HGSWI 363
|
| >3fcy_A Xylan esterase 1; alpha/beta hydrolase, carbohydrate esterase, CE7; 2.10A {Thermoanaerobacterium SP} Length = 346 | Back alignment and structure |
|---|
Score = 62.9 bits (153), Expect = 9e-11
Identities = 30/193 (15%), Positives = 46/193 (23%), Gaps = 34/193 (17%)
Query: 485 IKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFW--------AYPEDYKSKDAAG----- 531
+ + G + A P +G P L D + AAG
Sbjct: 85 LYFTGVRGARIHAKYIKPKT-----EGKHPALIRFHGYSSNSGDWNDKLNYVAAGFTVVA 139
Query: 532 -QVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAV 590
VRG S L G I G D ++ +
Sbjct: 140 MDVRGQGG--------QSQDVGGVTGNTLNGH--IIRGLDDD-ADNMLFRHIFLDTAQLA 188
Query: 591 EEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYN----KTLTPFGF 646
V+ D R+ V G S G ++ A P + + L
Sbjct: 189 GIVMNMPEVDEDRVGVMGPSQGGGLSLACAALEPRVRKVVSEYPFLSDYKRVWDLDLAKN 248
Query: 647 QAERFFDALKGHG 659
+ D +
Sbjct: 249 AYQEITDYFRLFD 261
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... Length = 740 | Back alignment and structure |
|---|
Score = 63.7 bits (155), Expect = 1e-10
Identities = 94/644 (14%), Positives = 182/644 (28%), Gaps = 127/644 (19%)
Query: 28 PDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNA 87
G IN S SPDG+ I ++ S I D + P+
Sbjct: 59 EFGHSINDYSISPDGQFILLEYNYVKQWRHSY-TASYDIYDLNKRQLITEERIPNNTQWV 117
Query: 88 VFG------SFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNL 141
+ ++VW N+ I+ + T +++II + +TD +
Sbjct: 118 TWSPVGHKLAYVWNND----IYVKIEPNLPSYRIT---------WTGKEDIIYNGITDWV 164
Query: 142 LKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTPAVYTAVEPS--PDQKYVLITSMHRPY- 198
Y+E +F Y+ S +GT Y + P +Y + Y
Sbjct: 165 ----YEEEVFSAYSALWW---SPNGTF------LAYAQFNDTEVPLIEYSFYSDESLQYP 211
Query: 199 ---SYKVPCA-RFSQKVQVWTTDGKLVRELCDLPPAE-DIPVCYNSVREGMRSISWRADK 253
P A + V+ + + + + + + P + ++W +
Sbjct: 212 KTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQE 271
Query: 254 PSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLAL 313
+L W R + ++ + + G ++ + + + W
Sbjct: 272 RISLQW---LRR------IQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPS 322
Query: 314 VNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKK 373
+ + + + + T VI I+
Sbjct: 323 EPHFTLDGNSFYKIISNEEG--------YRHIC--YFQIDKKDCTFITKGTWEVI-GIEA 371
Query: 374 ENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEED 433
+ +Y + N P G +L+ I ++ + E E
Sbjct: 372 LTSDYLYYISNEYKGMPGGR----NLYKIQLIDYTKVTCLSCELNPERC-----QYYSVS 422
Query: 434 INLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTLASLQ--KEMIKYQRKD 491
+ S K + + L ++Q + + + +
Sbjct: 423 FSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLEDNSALDKMLQNVQMPSKKLDFIILN 482
Query: 492 GVPLTATLYLPPGYDQSKDGPLPCLFWAYPE------------DYKSKDAAGQ------- 532
+ LPP +D+SK P L Y ++ + A+ +
Sbjct: 483 ETKFWYQMILPPHFDKSK--KYPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASF 540
Query: 533 -VRGSPN---EFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEA 588
RGS + RR G D Q+
Sbjct: 541 DGRGSGYQGDKIMHAI--------NRRL-------------GTFEVED----QI-----E 570
Query: 589 AVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIA 632
A + + G D RIA+ G SYG ++T+ +L +F CGIA
Sbjct: 571 AARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIA 614
|
| >1l7a_A Cephalosporin C deacetylase; structural genomics, alpha-beta-alpha sandwich, PSI, protein structure initiative; 1.50A {Bacillus subtilis} SCOP: c.69.1.25 PDB: 1odt_C 1ods_A 3fvt_A 3fvr_A 3fyu_A* 2xlb_A 2xlc_A 3fyt_A* 3fyu_B* Length = 318 | Back alignment and structure |
|---|
Score = 60.9 bits (148), Expect = 4e-10
Identities = 27/173 (15%), Positives = 45/173 (26%), Gaps = 41/173 (23%)
Query: 485 IKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWA--YPEDYKSKDAAGQVRGSPNEFSG 542
+ Y+ +T +P +GP P + Y G +E
Sbjct: 59 LTYKSFGNARITGWYAVPDK-----EGPHPAIVKYHGYN---------ASYDGEIHEM-- 102
Query: 543 MTPTSSLIFLARRFAVLA----------GPSIPIIGE-------GDKLPNDRFVEQLVSS 585
+ + +A SI G G + + +
Sbjct: 103 ------VNWALHGYATFGMLVRGQQRSEDTSISPHGHALGWMTKGILDKDTYYYRGVYLD 156
Query: 586 AEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYN 638
A A+E + D +RI V G S G +T A + N
Sbjct: 157 AVRALEVISSFDEVDETRIGVTGGSQGGGLTIAAAALSDIPKAAVADYPYLSN 209
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} Length = 741 | Back alignment and structure |
|---|
Score = 61.7 bits (150), Expect = 6e-10
Identities = 44/185 (23%), Positives = 70/185 (37%), Gaps = 35/185 (18%)
Query: 464 SSQITNFPHPYPTLASLQK--EMIKYQRKDG-VPLTATLYLPPGYDQSKDGPLPCLFWAY 520
+ + + HPY Q+ E DG PL ++ P G+D +K P + Y
Sbjct: 467 ENDLADPKHPYARYREAQRPVEFGTLTAADGKTPLNYSVIKPAGFDPAK--RYPVAVYVY 524
Query: 521 PEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARR-FAVLA---------GPSI--PIIG 568
+ V + + G +LA++ + V + G + G
Sbjct: 525 GGPA-----SQTV---TDSWPGRGDHLFNQYLAQQGYVVFSLDNRGTPRRGRDFGGALYG 576
Query: 569 E-GDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLF 627
+ G D QL V + ++ DP+RI V G S G +MT LLA A +
Sbjct: 577 KQGTVEVAD----QL-----RGVAWLKQQPWVDPARIGVQGWSNGGYMTLMLLAKASDSY 627
Query: 628 CCGIA 632
CG+A
Sbjct: 628 ACGVA 632
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 61.4 bits (148), Expect = 8e-10
Identities = 81/613 (13%), Positives = 160/613 (26%), Gaps = 198/613 (32%)
Query: 126 SNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTPAVYTAVEPSPD 185
+ K+I+ D+++ + S + +L V VE
Sbjct: 39 QDMPKSILSKEEIDHIIMSKDAVS------GTLRLFWTL----LSKQEEMVQKFVEEVLR 88
Query: 186 QKYVLITSMHRPYSYKVPCA---RFSQKVQVWTTDG---------------KLVRELCDL 227
Y + S + + P + ++ D KL + L +L
Sbjct: 89 INYKFLMSPIK-TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL 147
Query: 228 PPAEDIPVCYNSVREGM-------------RSISWRADKPSTLYWVEAQDRGDANVEVSP 274
PA+++ + G+ S + ++W+ + + N SP
Sbjct: 148 RPAKNVLID------GVLGSGKTWVALDVCLSYKVQCKMDFKIFWL---NLKNCN---SP 195
Query: 275 RDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK 334
++ E+L KL + +W S N + + L
Sbjct: 196 ETVL-------------EMLQKLLYQIDP-NWTSRSDHSSNIK-LRIHSIQAELRRLLKS 240
Query: 335 DVAPRVLFDRVFENVYS-------DPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRG 387
L V NV + + ++ T+ V + I + +
Sbjct: 241 KPYENCLL--VLLNVQNAKAWNAFNLSCKILL-TTRFKQVTDFLSAATTTHISLDHHSMT 297
Query: 388 FTPEGNIPFLDLFDINTGSKER----------------IWESNRE-----KYFETAVALV 426
TP+ L + + I ES R+ ++ V
Sbjct: 298 LTPDEV---KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH----V 350
Query: 427 FGQGEEDINLNQLKILTSKESKTEITQYHILS-WPLKKSSQITNFPHPYPTLASLQKEMI 485
I + L +L E + + LS +P S+ I P L+ + ++I
Sbjct: 351 NCDKLTTIIESSLNVLEPAEYR---KMFDRLSVFP--PSAHI-----PTILLSLIWFDVI 400
Query: 486 KYQ--------------RKDGVPLTATLY-------------------------LPPGYD 506
K K T ++ +P +D
Sbjct: 401 KSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFD 460
Query: 507 QSKDGPLPC---LFW--AYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRF--AVL 559
P + + K+ + ++ F ++FL RF +
Sbjct: 461 SDDLIPPYLDQYFYSHIGH--HLKNIEHPERM----TLF-------RMVFLDFRFLEQKI 507
Query: 560 AGPSIPIIGEGDKLP--ND-RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMT 616
S G L +F + + + E +V + F
Sbjct: 508 RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVN--------------AILDF-- 551
Query: 617 AHLLAHAPHLFCC 629
L +L C
Sbjct: 552 --LPKIEENLICS 562
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A Length = 582 | Back alignment and structure |
|---|
Score = 60.6 bits (147), Expect = 9e-10
Identities = 30/173 (17%), Positives = 51/173 (29%), Gaps = 50/173 (28%)
Query: 483 EMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSG 542
++ + DG + + P P + V G P
Sbjct: 334 RLVWVESFDGSRVPTYVLESGR----APTPGPTVVL--------------VHGGPFAEDS 375
Query: 543 MTPTSSLIFLARR-FAVLAGPSIPIIGEGDKLPNDR--------FVEQL--------VSS 585
+ + LA F V+ PN R + ++ +
Sbjct: 376 DSWDTFAASLAAAGFHVVM-------------PNYRGSTGYGEEWRLKIIGDPCGGELED 422
Query: 586 AEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYN 638
AA G+A + + G+SYG +MT L P LF G+A + +
Sbjct: 423 VSAAARWARESGLAS--ELYIMGYSYGGYMTLCALTMKPGLFKAGVAGASVVD 473
|
| >3ksr_A Putative serine hydrolase; catalytic triad, structural genomics, JOIN for structural genomics, JCSG; 2.69A {Xanthomonas campestris PV} Length = 290 | Back alignment and structure |
|---|
Score = 59.5 bits (144), Expect = 1e-09
Identities = 31/265 (11%), Positives = 63/265 (23%), Gaps = 76/265 (28%)
Query: 479 SLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPN 538
+ I+ L+ TL P G P + + + G
Sbjct: 3 EAKLSSIEIPV-GQDELSGTLLTPTGM--------PGVLFVH--------------GWGG 39
Query: 539 EFSGMTPTSSLIFLARR-FAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRG 597
+ + + + Q + +AA +++
Sbjct: 40 SQHHSLVRAR--EAVGLGCICMT-FDLRGHEGYASMRQSVTRAQNLDDIKAAYDQLASLP 96
Query: 598 VADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIA-------------RSGSYNKTLTPF 644
D IAV G SYG +++A L P + + S + + L +
Sbjct: 97 YVDAHSIAVVGLSYGGYLSALLTRERPVEWLALRSPALYKDAHWDQPKVSLNADPDLMDY 156
Query: 645 GFQAE-----------------------------------RFFDALKGHGALSRLVLLPF 669
+A + DA + ++
Sbjct: 157 RRRALAPGDNLALAACAQYKGDVLLVEAENDVIVPHPVMRNYADAFT-NARSLTSRVIAG 215
Query: 670 EHHVYAARENVMHVIWETDRWLQKY 694
H + +E+ WL +
Sbjct: 216 ADHALSVKEHQQEYTRALIDWLTEM 240
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 Length = 723 | Back alignment and structure |
|---|
Score = 58.7 bits (142), Expect = 4e-09
Identities = 87/655 (13%), Positives = 168/655 (25%), Gaps = 158/655 (24%)
Query: 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLF---ESPDICLNAV 88
+ SPD + FS V+ S ++ G+ + L S A
Sbjct: 62 RAIRYEISPDREYALFSYNVEPIYQHSY-TGYYVLSKIPHGDPQSLDPPEVSNAKLQYAG 120
Query: 89 FG------SFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLL 142
+G F++ NN I+ + + S ++ +I + ++D L
Sbjct: 121 WGPKGQQLIFIFENN----IYYCAHVGKQAIRVV---------STGKEGVIYNGLSDWL- 166
Query: 143 KDEYDESLFDYYTTAQLVLGSLDGTAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKV 202
Y+E + + A SPD +
Sbjct: 167 ---YEEEILK-----------------------THIAHWWSPDGTRLA------------ 188
Query: 203 PCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEA 262
+ V + + + + K
Sbjct: 189 ----------YAAINDSRVPI---------MELPTYTGSIYPTVKPYHYPKA-------- 221
Query: 263 QDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTS 322
G N +S I P E P+ + V W + V TW +
Sbjct: 222 ---GSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAV--TWLNRA 276
Query: 323 QTRTWLV-CPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTN--VIAKIKKENDEQI 379
Q + L C + V + D + + + G I I + +
Sbjct: 277 QNVSILTLCDATTGVCTKKHEDE--SEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKF 334
Query: 380 YIL--------LNGRGFTP--EGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQ 429
Y + + G+ + + + + S + +
Sbjct: 335 YHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTV 394
Query: 430 GEEDINLNQLKILT---------SKESKTEITQYHILSWPL---------KKSSQITNFP 471
G + ++ S + + P+ KK +
Sbjct: 395 GNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMFDLETNE 454
Query: 472 HPYPTLASLQKEMIKYQ--RKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDA 529
H + Q ++Y+ D L + P + + P L
Sbjct: 455 HVKKAINDRQMPKVEYRDIEIDDYNLPMQILKPATFTDTT--HYPLLLVVDGTPG----- 507
Query: 530 AGQVRGSPNEFSGMTPTSSLIFLARR-FAVLA----GPSIPIIGEGDKL---PNDRFVEQ 581
+ V +F T + ++ V+ G +G KL R
Sbjct: 508 SQSVA---EKFEVSWET---VMVSSHGAVVVKCDGRGSG----FQGTKLLHEVRRRLGLL 557
Query: 582 LVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAP----HLFCCGIA 632
AV +++ D +R+AV G YG +++ ++L F CG A
Sbjct: 558 EEKDQMEAVRTMLKEQYIDRTRVAVFGKDYGGYLSTYILPAKGENQGQTFTCGSA 612
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} Length = 347 | Back alignment and structure |
|---|
Score = 57.6 bits (139), Expect = 6e-09
Identities = 40/214 (18%), Positives = 67/214 (31%), Gaps = 47/214 (21%)
Query: 37 SWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVN 96
SPDGK+IAF +R +EE VS +W+AD ET +K + E+ +I S W
Sbjct: 65 RISPDGKKIAF-MRANEEKKVS----EIWVADLETLSSKKILEAKNI------RSLEWNE 113
Query: 97 NSTLLIFTIPSSRRDPPKKTMVPL-----GPKIQSNEQKNIII----SRMTDNLLKDEYD 147
+S L+ R D + E+ I S +
Sbjct: 114 DSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKPRF 173
Query: 148 ESLF-----------------DYYTTAQLVLGSLDGTAKDFGTPAVYTAVEPSPDQKYVL 190
S Y+ + + ++ V D + +L
Sbjct: 174 SSGIWHRDKIVVNVPHREIIPQYFKFWDIY--IWEDGKEEKMFEKVSFYA-VDSDGERIL 230
Query: 191 ITSMHRPYSYKVPCARFSQKVQVWTTDGKLVREL 224
+ S+ +++ DGK V +
Sbjct: 231 LYGKPEKK-------YMSEHNKLYIYDGKEVMGI 257
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} Length = 347 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 3e-05
Identities = 10/90 (11%), Positives = 30/90 (33%), Gaps = 16/90 (17%)
Query: 29 DGAKINFVS-WSPDGKRIAFSV-RVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLN 86
AK ++S G+ +A+ + + + +DN + + I + + + + +
Sbjct: 10 TFAKFAYLSDPRTKGELVAYVLTKANLKDNKY--ENTIVIENLKNNARRFIENAT----- 62
Query: 87 AVFGSFVWVNNSTLLIFTIPSSRRDPPKKT 116
+ + F + K +
Sbjct: 63 ----MPRISPDGKKIAFM---RANEEKKVS 85
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} Length = 719 | Back alignment and structure |
|---|
Score = 57.9 bits (140), Expect = 8e-09
Identities = 38/165 (23%), Positives = 57/165 (34%), Gaps = 55/165 (33%)
Query: 491 DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPE------------DYKSKDAAGQ------ 532
D + L + LPP +D+SK P L Y ++ S A+ +
Sbjct: 476 DEITLWYKMILPPQFDRSK--KYPLLIQVYGGPCSQSVRSVFAVNWISYLASKEGMVIAL 533
Query: 533 --VRGSPN---EFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAE 587
RG+ + R+ G D Q+
Sbjct: 534 VDGRGTAFQGDKLLYAV--------YRKL-------------GVYEVED----QI----- 563
Query: 588 AAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIA 632
AV + + G D RIA+ G SYG ++++ LA LF CGIA
Sbjct: 564 TAVRKFIEMGFIDEKRIAIWGWSYGGYVSSLALASGTGLFKCGIA 608
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* Length = 706 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 2e-08
Identities = 16/48 (33%), Positives = 23/48 (47%)
Query: 588 AAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSG 635
V+ + + D RI V G SYG FMT +L+ +F G+A
Sbjct: 555 CGVDFLKSQSWVDADRIGVHGWSYGGFMTTNLMLTHGDVFKVGVAGGP 602
|
| >3c8d_A Enterochelin esterase; alpha-beta-alpha sandwich, IROD, iron aquisition, structural genomics, PSI-2, protein structure initiative; HET: CIT; 1.80A {Shigella flexneri 2a str} SCOP: b.1.18.20 c.69.1.2 PDB: 2b20_A 3c87_A* 3c8h_A 3mga_A* Length = 403 | Back alignment and structure |
|---|
Score = 55.8 bits (134), Expect = 2e-08
Identities = 23/142 (16%), Positives = 36/142 (25%), Gaps = 13/142 (9%)
Query: 496 TATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARR 555
++ P E + V S + P
Sbjct: 183 RVWIFTTGDVTAE---ERPLAVLLDGEFWAQSMPVWPVLTSLTHRQQLPPAV-------- 231
Query: 556 FAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFM 615
VL + N F + V+ + R V G S+G
Sbjct: 232 -YVLIDAIDTTHRAHELPCNADFWLAVQQELLPLVKVIAPF-SDRADRTVVAGQSFGGLS 289
Query: 616 TAHLLAHAPHLFCCGIARSGSY 637
+ H P F C +++SGSY
Sbjct: 290 ALYAGLHWPERFGCVLSQSGSY 311
|
| >3mve_A FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/respiration switch protein, hydrolase ACTI lyase; 2.20A {Vibrio vulnificus} PDB: 3our_A Length = 415 | Back alignment and structure |
|---|
Score = 53.9 bits (129), Expect = 1e-07
Identities = 23/150 (15%), Positives = 38/150 (25%), Gaps = 33/150 (22%)
Query: 491 DGVPLTATLYLPPGYDQSKDGPLPCL-----FWAYPEDYKSKDAAGQVRGSPNEFSGMTP 545
+ +TA L+L D P P + + D M
Sbjct: 176 EKGKITAHLHLTNT-----DKPHPVVIVSAGLDSLQTD-------------------MWR 211
Query: 546 TSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIA 605
A+L +P +G K P +L A + E+ D R+
Sbjct: 212 LFRDHLAKHDIAMLT-VDMPSVGYSSKYPLTEDYSRLHQ---AVLNELFSIPYVDHHRVG 267
Query: 606 VGGHSYGAFMTAHLLAHAPHLFCCGIARSG 635
+ G +G L +
Sbjct: 268 LIGFRFGGNAMVRLSFLEQEKIKACVILGA 297
|
| >3g8y_A SUSD/RAGB-associated esterase-like protein; structural genom joint center for structural genomics, JCSG; HET: MSE; 1.90A {Bacteroides vulgatus atcc 8482} Length = 391 | Back alignment and structure |
|---|
Score = 51.1 bits (121), Expect = 7e-07
Identities = 15/169 (8%), Positives = 36/169 (21%), Gaps = 26/169 (15%)
Query: 483 EMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSG 542
E ++ T + P G +P + + G+
Sbjct: 88 EKWEFYPFPKSVSTFLVLKPEH----LKGAVPGVLCIPGSGRTKEGLVGEPGICDKLTED 143
Query: 543 MTPTSSLI---FLARRFAVLAGPSIPIIGEGDKLPNDR-------------------FVE 580
+ + + +A + D D+ ++
Sbjct: 144 YNNPKVSMALNMVKEGYVAVAVDNAAAGEASDLECYDKGWNYDYDVVSRFLLELGWSWLG 203
Query: 581 QLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCC 629
+ + + RI + G S G L ++
Sbjct: 204 YTSYLDMQVLNWMKAQSYIRKDRIVISGFSLGTEPMMVLGVLDKDIYAF 252
|
| >3nuz_A Putative acetyl xylan esterase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 2.30A {Bacteroides fragilis} Length = 398 | Back alignment and structure |
|---|
Score = 49.8 bits (118), Expect = 2e-06
Identities = 18/172 (10%), Positives = 40/172 (23%), Gaps = 32/172 (18%)
Query: 483 EMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSG 542
E ++ T + +P + P+P + + AG+ +P
Sbjct: 93 EKWEFYPLPKCVSTFLVLIPDN----INKPVPAILCIPGSGGNKEGLAGEPGIAPKLNDR 148
Query: 543 MTPTSSLI--FLARR-FAVLAGPSIPIIGEGDKLPNDRFVE------------------- 580
+ + +A + G+ +R+
Sbjct: 149 YKDPKLTQALNFVKEGYIAVA---VDNPAAGEASDLERYTLGSNYDYDVVSRYLLELGWS 205
Query: 581 ---QLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCC 629
+ + + RI V G S G L ++
Sbjct: 206 YLGYASYLDMQVLNWMKTQKHIRKDRIVVSGFSLGTEPMMVLGTLDTSIYAF 257
|
| >3hlk_A Acyl-coenzyme A thioesterase 2, mitochondrial; alpha/beta hydrolase, alternative splicing, hydrolase, mitochondrion, polymorphism, serine esterase; 2.10A {Homo sapiens} Length = 446 | Back alignment and structure |
|---|
Score = 49.4 bits (117), Expect = 3e-06
Identities = 28/191 (14%), Positives = 56/191 (29%), Gaps = 18/191 (9%)
Query: 500 YLPPGYDQSK-DGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAV 558
+LPPG + P + + G+ G+ + + + FAV
Sbjct: 146 FLPPGVRREPVRVGRVRGTLFLPPEPGPFPGIVDMFGTG---GGLLEYRASLLAGKGFAV 202
Query: 559 LAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAH 618
+A + LP + E A+ ++ + + G S G +
Sbjct: 203 MA----LAYYNYEDLP-KTMETLHLEYFEEAMNYLLSHPEVKGPGVGLLGISKGGELCLS 257
Query: 619 LLAHAPHLFCCGIARSGSYN---------KTLTPFGFQAERFFDALKGHGALSRLVLLPF 669
+ + + + N +TL P G R G+ + ++ P
Sbjct: 258 MASFLKGITAAVVINGSVANVGGTLRYKGETLPPVGVNRNRIKVTKDGYADIVDVLNSPL 317
Query: 670 EHHVYAARENV 680
E + V
Sbjct: 318 EGPDQKSFIPV 328
|
| >1ufo_A Hypothetical protein TT1662; alpha-beta fold, hydrolase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.60A {Thermus thermophilus} SCOP: c.69.1.27 Length = 238 | Back alignment and structure |
|---|
Score = 48.2 bits (114), Expect = 3e-06
Identities = 32/192 (16%), Positives = 52/192 (27%), Gaps = 52/192 (27%)
Query: 551 FLARRFAVLAGPSIPIIGEGDKLP----NDRFVEQLVSSAEAAVEEVVR----RGVADPS 602
+ R F +LA P GE + P + R+VE++ A EE R
Sbjct: 47 YAERGFLLLA-FDAPRHGEREGPPPSSKSPRYVEEVYRVALGFKEEARRVAEEAERRFGL 105
Query: 603 RIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGF---------------- 646
+ + G S GAF+ LLA + L
Sbjct: 106 PLFLAGGSLGAFVAHLLLAEGFRPRGVLAFIGSGFPMKLPQGQVVEDPGVLALYQAPPAT 165
Query: 647 ------------------------QAERFFDALKGHGALSRLVLLPFEHHVYAARENVMH 682
+ E+ +AL+ H RL E + +
Sbjct: 166 RGEAYGGVPLLHLHGSRDHIVPLARMEKTLEALRPHYPEGRLARFVEEGAGHTLTPLMAR 225
Query: 683 VIWETDRWLQKY 694
+L+ +
Sbjct: 226 ---VGLAFLEHW 234
|
| >3k2i_A Acyl-coenzyme A thioesterase 4; alpha/beta hydrolase fold seven-stranded beta-sandwich, structural genomics, structural genomics consortium, SGC; 2.40A {Homo sapiens} Length = 422 | Back alignment and structure |
|---|
Score = 49.0 bits (116), Expect = 4e-06
Identities = 27/193 (13%), Positives = 55/193 (28%), Gaps = 20/193 (10%)
Query: 499 LYLPPG--YDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRF 556
+LPPG + G + P + G G+ + + F
Sbjct: 129 HFLPPGVWRQSVRAGRVRA-TLFLPPGPGPFPGIIDIFGIG---GGLLEYRASLLAGHGF 184
Query: 557 AVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMT 616
A LA + LP + + E AV +++ I + G S GA +
Sbjct: 185 ATLA----LAYYNFEDLP-NNMDNISLEYFEEAVCYMLQHPQVKGPGIGLLGISLGADIC 239
Query: 617 AHLLAHAPHLFCCGIARSGSYN---------KTLTPFGFQAERFFDALKGHGALSRLVLL 667
+ + ++ + ++ P G+ R A G + +
Sbjct: 240 LSMASFLKNVSATVSINGSGISGNTAINYKHSSIPPLGYDLRRIKVAFSGLVDIVDIRNA 299
Query: 668 PFEHHVYAARENV 680
+ + +
Sbjct: 300 LVGGYKNPSMIPI 312
|
| >2jbw_A Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine hydrolase; alpha/beta hydrolase, META-cleavage pathway; 2.1A {Arthrobacter nicotinovorans} SCOP: c.69.1.41 Length = 386 | Back alignment and structure |
|---|
Score = 48.1 bits (114), Expect = 6e-06
Identities = 34/168 (20%), Positives = 54/168 (32%), Gaps = 30/168 (17%)
Query: 491 DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLI 550
DG+P+ + +P G GP P + + + E M
Sbjct: 135 DGIPMPVYVRIPEG-----PGPHPAVIMLGGLE-----------STKEESFQMENL---- 174
Query: 551 FLARRFAVLA--GPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGG 608
L R A GP + E ++ D E+ S A V+ + + I V G
Sbjct: 175 VLDRGMATATFDGPGQGEMFEYKRIAGDY--EKYTS---AVVDLLTKLEAIRNDAIGVLG 229
Query: 609 HSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQAERFFDALK 656
S G A P L C I+ G + L + + ++ K
Sbjct: 230 RSLGGNYALKSAACEPRLAAC-ISWGGFSD--LDYWDLETPLTKESWK 274
|
| >3og9_A Protein YAHD A copper inducible hydrolase; alpha/beta hydrolase, copper homeostasis, malic acid; 1.88A {Lactococcus lactis subsp} Length = 209 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 9e-06
Identities = 21/152 (13%), Positives = 41/152 (26%), Gaps = 29/152 (19%)
Query: 565 PIIGEGDKLPNDRFVEQLVSSAEA---AVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLA 621
+ G G + +E L + V + + D ++ G+S GA + ++
Sbjct: 62 KLRGLGGFTKENFDLESLDEETDWLTDEVSLLAEKHDLDVHKMIAIGYSNGANVALNMFL 121
Query: 622 HAPHLFCCGIARSGSYNKTLTPFG--------------------FQAERFFDALKGHGAL 661
F IA G + L+ G
Sbjct: 122 RGKINFDKIIAFHGMQLEDFEQTVQLDDKHVFLSYAPNDMIVPQKNFGDLKGDLEDSGCQ 181
Query: 662 SRLVLLPFEHHVYAARENVMHVIWETDRWLQK 693
+ H + +E V+ +WL +
Sbjct: 182 LEIYESSLGHQL--TQEEVLAAK----KWLTE 207
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* Length = 1045 | Back alignment and structure |
|---|
Score = 47.9 bits (113), Expect = 1e-05
Identities = 17/87 (19%), Positives = 30/87 (34%), Gaps = 9/87 (10%)
Query: 29 DGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPL--FESPDICLN 86
+ IN + PDG++IA V N + ++ + E GE K + F
Sbjct: 51 NLGVINNARFFPDGRKIAIRVMRGSSLNTA----DLYFYNGENGEIKRITYFSGKSTGRR 106
Query: 87 AVFGSFVWVNNSTLLIFTIPSSRRDPP 113
+ + L+I + P
Sbjct: 107 MFTDVAGFDPDGNLIIS---TDAMQPF 130
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* Length = 1045 | Back alignment and structure |
|---|
Score = 43.2 bits (101), Expect = 3e-04
Identities = 30/265 (11%), Positives = 67/265 (25%), Gaps = 25/265 (9%)
Query: 15 DDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA 74
D G + + +F + S + + IA+ + + + + D E +
Sbjct: 406 DLETGKPTVIERSREAMITDF-TISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI 464
Query: 75 KPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIII 134
+ + + +S L + S R P V L + +
Sbjct: 465 FAATTEN-----SHDYAPAFDADSKNLYYL--SYRSLDPSPDRVVLNFSFEVVSK----- 512
Query: 135 SRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTPAVYTAVEPSPDQKYVLITSM 194
L+ + + + S G + + P ++I
Sbjct: 513 -PFVIPLIPGSPNPTKLVPRSM-----TSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLE 566
Query: 195 HRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254
Y VP K V D+ + V + + AD+
Sbjct: 567 SSILIYSVPVHG-EFAAYYQGAPEKGVLLKYDVKTRKVTEVK-----NNLTDLRLSADRK 620
Query: 255 STLYWVEAQDRGDANVEVSPRDIIY 279
+ + + +E +
Sbjct: 621 TVMVRKDDGKIYTFPLEKPEDERTV 645
|
| >2o2g_A Dienelactone hydrolase; YP_324580.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.92A {Anabaena variabilis} Length = 223 | Back alignment and structure |
|---|
Score = 45.3 bits (107), Expect = 2e-05
Identities = 36/231 (15%), Positives = 57/231 (24%), Gaps = 56/231 (24%)
Query: 491 DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLI 550
V L L +P G + +A +G R SP
Sbjct: 20 GEVKLKGNLVIPNG-------ATGIVLFA--------HGSGSSRYSPR----------NR 54
Query: 551 FLARR-----FAVLAGPSIPIIGEGDKLPNDRF----VEQLVSSAEAAVEEVVRRGVADP 601
++A A L + E + R + L S A + +
Sbjct: 55 YVAEVLQQAGLATLL-IDLLTQEEEEIDLRTRHLRFDIGLLASRLVGATDWLTHNPDTQH 113
Query: 602 SRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSG------------------SYNKTLTP 643
++ G S G A P ++R G P
Sbjct: 114 LKVGYFGASTGGGAALVAAAERPETVQAVVSRGGRPDLAPSALPHVKAPTLLIVGGYDLP 173
Query: 644 FGFQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKY 694
E + L RLV++P H++ + V W Y
Sbjct: 174 VIAMNEDALEQL---QTSKRLVIIPRASHLFEEPGALTAVAQLASEWFMHY 221
|
| >2d81_A PHB depolymerase; alpha/beta hydrolase fold, circular permutation, hydrolase; HET: NAG RB3; 1.66A {Penicillium funiculosum} SCOP: c.69.1.37 PDB: 2d80_A* Length = 318 | Back alignment and structure |
|---|
Score = 44.1 bits (103), Expect = 1e-04
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 599 ADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIA 632
+P+ ++V G + G +M A L +F G
Sbjct: 8 VNPNSVSVSGLASGGYMAAQLGVAYSDVFNVGFG 41
|
| >3fnb_A Acylaminoacyl peptidase SMU_737; alpha-beta-alpha sandwich, helix bundle, structural genomics protein structure initiative; HET: PGE; 2.12A {Streptococcus mutans} Length = 405 | Back alignment and structure |
|---|
Score = 43.5 bits (102), Expect = 2e-04
Identities = 27/136 (19%), Positives = 44/136 (32%), Gaps = 11/136 (8%)
Query: 551 FLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHS 610
+ VL +P G+G N A AA+ ++ A +IA+ G S
Sbjct: 183 GWEHDYNVLM-VDLP--GQGK---NPNQGLHFEVDARAAISAILDWYQAPTEKIAIAGFS 236
Query: 611 YGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQAERFFDALKGHGALSRLVLLPFE 670
G + TA + + IA + Y+ F ALK + +
Sbjct: 237 GGGYFTAQAVEKDKRIKAW-IASTPIYD----VAEVFRISFSTALKAPKTILKWGSKLVT 291
Query: 671 HHVYAARENVMHVIWE 686
A N+ W+
Sbjct: 292 SVNKVAEVNLNKYAWQ 307
|
| >2hdw_A Hypothetical protein PA2218; alpha/beta hydrolase fold, structural genomics, PSI, structure initiative; 2.00A {Pseudomonas aeruginosa} Length = 367 | Back alignment and structure |
|---|
Score = 42.8 bits (100), Expect = 3e-04
Identities = 33/166 (19%), Positives = 50/166 (30%), Gaps = 41/166 (24%)
Query: 473 PYPTLASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCL-----FWAYPEDYKSK 527
+P A ++ + + + G+ L A LYLP LP + F A E
Sbjct: 59 TFPLSAKVEHRKVTFANRYGITLAADLYLPKNRG---GDRLPAIVIGGPFGAVKEQSSGL 115
Query: 528 DAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA------GPSIPIIGEGDKLPN-DRFVE 580
A R F LA G S G+ + + D E
Sbjct: 116 YAQT-------------------MAERGFVTLAFDPSYTGES---GGQPRNVASPDINTE 153
Query: 581 QLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHL 626
AAV+ + + RI V G M + +A +
Sbjct: 154 D----FSAAVDFISLLPEVNRERIGVIGICGWGGMALNAVAVDKRV 195
|
| >3h2g_A Esterase; xanthomonas oryzae PV. oryzae, cell WALL degrading enzyme, RICE, virulence, innate immune responses, pathogenesis; 1.86A {Xanthomonas oryzae PV} PDB: 3h2j_A 3h2k_A* 3h2h_A 3h2i_A Length = 397 | Back alignment and structure |
|---|
Score = 42.6 bits (99), Expect = 3e-04
Identities = 23/186 (12%), Positives = 44/186 (23%), Gaps = 14/186 (7%)
Query: 460 PLKKSSQITNFPHPYPTLASLQKEMIKYQRKDG----VPLTATLYLPPGYDQSKDGPLPC 515
L SQ + P +++ Y + L +P G GP P
Sbjct: 24 MLASGSQPASGSQPEQAKCNVRVAEFTYATIGVEGEPATASGVLLIPGGER--CSGPYPL 81
Query: 516 LFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA----GPSIPIIGEGD 571
L W +P + + ++ + V+ G
Sbjct: 82 LGWGHPTEALRAQEQ----AKEIRDAKGDDPLVTRLASQGYVVVGSDYLGLGKSNYAYHP 137
Query: 572 KLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGI 631
L + + + AA + ++ + G+S G
Sbjct: 138 YLHSASEASATIDAMRAARSVLQHLKTPLSGKVMLSGYSQGGHTAMATQREIEAHLSKEF 197
Query: 632 ARSGSY 637
S
Sbjct: 198 HLVASA 203
|
| >3gff_A IROE-like serine hydrolase; NP_718593.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.12A {Shewanella oneidensis} Length = 331 | Back alignment and structure |
|---|
Score = 42.3 bits (99), Expect = 3e-04
Identities = 27/157 (17%), Positives = 48/157 (30%), Gaps = 30/157 (19%)
Query: 498 TLYLPPGYDQSKDGPLPCL-----------------FWAYPEDYKSKDAAGQVRGSPNEF 540
+ LP GY QS + P + F + + + N
Sbjct: 29 VIALPEGYAQSLEA-YPVVYLLDGEDQFDHMASLLQFLSQGTMPQIPKVIIVGIHNTNRM 87
Query: 541 SGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVAD 600
TPT +L+ + P G + F++ + ++E +R +
Sbjct: 88 RDYTPTHTLVLPSGNKG---NPQYQHTGGAGR-----FLDFIEKELAPSIESQLR---TN 136
Query: 601 PSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSY 637
+ GHS+G + L LF +A S
Sbjct: 137 GIN-VLVGHSFGGLVAMEALRTDRPLFSAYLALDTSL 172
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} Length = 297 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 5e-04
Identities = 19/84 (22%), Positives = 31/84 (36%), Gaps = 16/84 (19%)
Query: 8 GIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIA 67
++RL PEK G+ N SPDG A S +V+ K +++
Sbjct: 63 LLYRLSLAGDPSPEKVDTGFATIC-NNDHGISPDGALYAISDKVEFG------KSAIYLL 115
Query: 68 DAETGEAKPLFE---------SPD 82
+ G + + + SPD
Sbjct: 116 PSTGGTPRLMTKNLPSYWHGWSPD 139
|
| >2qm0_A BES; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: SVY; 1.84A {Bacillus cereus atcc 14579} Length = 275 | Back alignment and structure |
|---|
Score = 41.5 bits (97), Expect = 5e-04
Identities = 13/81 (16%), Positives = 22/81 (27%), Gaps = 3/81 (3%)
Query: 576 DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSG 635
F + + +E+ D + + GH G H+L + F S
Sbjct: 129 HNFFTFIEEELKPQIEKNFE---IDKGKQTLFGHXLGGLFALHILFTNLNAFQNYFISSP 185
Query: 636 SYNKTLTPFGFQAERFFDALK 656
S + E L
Sbjct: 186 SIWWNNKSVLEKEENLIIELN 206
|
| >1mpx_A Alpha-amino acid ester hydrolase; alpha/beta hydrolase, jellyroll, selenomethionine; 1.90A {Xanthomonas citri} SCOP: b.18.1.13 c.69.1.21 Length = 615 | Back alignment and structure |
|---|
Score = 42.1 bits (98), Expect = 6e-04
Identities = 26/213 (12%), Positives = 58/213 (27%), Gaps = 28/213 (13%)
Query: 490 KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSL 549
+DGV L + LP G P + P Y + SP+ +
Sbjct: 33 RDGVKLHTVIVLPKG-----AKNAPIVLTRTP--Y-DASGRTERLASPH-MKDLLSAGDD 83
Query: 550 IFLARRFAVL------AGPS--IPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADP 601
+F+ + + S ++ + P + + A ++ +V+
Sbjct: 84 VFVEGGYIRVFQDVRGKYGSEGDYVMTRPLRGPLNPSEVDHATDAWDTIDWLVKNVSESN 143
Query: 602 SRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQAERFFDALKGHGAL 661
++ + G SY F L + + S + + +
Sbjct: 144 GKVGMIGSSYEGFTVVMALTNPHPALKVAVPESPMID-----------GWMGDDWFNYGA 192
Query: 662 SRLVLLPFEHHVYAARENVMHVIWETDRWLQKY 694
R V + + R + + +
Sbjct: 193 FRQVNFDYFTGQLSKRGKGAGIARQGHDDYSNF 225
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 706 | |||
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 100.0 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 100.0 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 100.0 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 100.0 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 100.0 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 100.0 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 100.0 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 100.0 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 100.0 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 100.0 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 100.0 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 100.0 | |
| 4hvt_A | 711 | Ritya.17583.B, post-proline cleaving enzyme; ssgci | 100.0 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.94 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.9 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.9 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.89 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.89 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.89 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.88 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.87 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.87 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.86 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.85 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.84 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.82 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.81 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.81 | |
| 3ebl_A | 365 | Gibberellin receptor GID1; alpha/beta hydrolase, l | 99.81 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.79 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.78 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.78 | |
| 3f67_A | 241 | Putative dienelactone hydrolase; alpha-beta-alpha | 99.77 | |
| 4ao6_A | 259 | Esterase; hydrolase, thermo label; 1.60A {Unidenti | 99.76 | |
| 3ga7_A | 326 | Acetyl esterase; phosphoserine, IDP00896, hydrolas | 99.76 | |
| 3doh_A | 380 | Esterase; alpha-beta hydrolase, beta sheet; 2.60A | 99.76 | |
| 3fak_A | 322 | Esterase/lipase, ESTE5; HSL, hydrolase; 1.90A {Unc | 99.76 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.74 | |
| 3hxk_A | 276 | Sugar hydrolase; alpha-beta protein., structural g | 99.74 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.74 | |
| 2o2g_A | 223 | Dienelactone hydrolase; YP_324580.1, structural ge | 99.74 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.74 | |
| 1jjf_A | 268 | Xylanase Z, endo-1,4-beta-xylanase Z, 1,4-beta-D-x | 99.74 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.73 | |
| 3qh4_A | 317 | Esterase LIPW; structural genomics, ssgcid, seattl | 99.73 | |
| 3k2i_A | 422 | Acyl-coenzyme A thioesterase 4; alpha/beta hydrola | 99.72 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 99.71 | |
| 2jbw_A | 386 | Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine | 99.71 | |
| 3hlk_A | 446 | Acyl-coenzyme A thioesterase 2, mitochondrial; alp | 99.71 | |
| 2i3d_A | 249 | AGR_C_3351P, hypothetical protein ATU1826; structu | 99.71 | |
| 3fcx_A | 282 | FGH, esterase D, S-formylglutathione hydrolase; re | 99.71 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.7 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.7 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.69 | |
| 3ain_A | 323 | 303AA long hypothetical esterase; carboxylesterase | 99.69 | |
| 2o7r_A | 338 | CXE carboxylesterase; alpha/beta hydrolase; 1.40A | 99.69 | |
| 2hm7_A | 310 | Carboxylesterase; alpha/beta hydrolase fold, hydro | 99.69 | |
| 3bxp_A | 277 | Putative lipase/esterase; putative carboxylesteras | 99.69 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.68 | |
| 3ls2_A | 280 | S-formylglutathione hydrolase; psychrophilic organ | 99.68 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.68 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.68 | |
| 3i6y_A | 280 | Esterase APC40077; lipase, structural genomics, PS | 99.68 | |
| 1lzl_A | 323 | Heroin esterase; alpha/beta hydrolase; 1.30A {Rhod | 99.68 | |
| 3e4d_A | 278 | Esterase D; S-formylglutathione hydrolase, hydrola | 99.67 | |
| 3ksr_A | 290 | Putative serine hydrolase; catalytic triad, struct | 99.67 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.67 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 99.67 | |
| 1vlq_A | 337 | Acetyl xylan esterase; TM0077, structural genomics | 99.67 | |
| 2uz0_A | 263 | Esterase, tributyrin esterase; alpha/beta hydrolas | 99.67 | |
| 2wir_A | 313 | Pesta, alpha/beta hydrolase fold-3 domain protein; | 99.67 | |
| 1gkl_A | 297 | Endo-1,4-beta-xylanase Y; hydrolase, esterase fami | 99.67 | |
| 2c7b_A | 311 | Carboxylesterase, ESTE1; carboxyesterase, thermoph | 99.67 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.67 | |
| 3k6k_A | 322 | Esterase/lipase; alpha/beta hydrolase fold; 2.20A | 99.66 | |
| 2zsh_A | 351 | Probable gibberellin receptor GID1L1; plant hormon | 99.66 | |
| 1zi8_A | 236 | Carboxymethylenebutenolidase; alpha and beta prote | 99.66 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.66 | |
| 3fcy_A | 346 | Xylan esterase 1; alpha/beta hydrolase, carbohydra | 99.66 | |
| 4b6g_A | 283 | Putative esterase; hydrolase, formaldehyde detoxif | 99.65 | |
| 2fuk_A | 220 | XC6422 protein; A/B hydrolase, structural genomics | 99.65 | |
| 1jkm_A | 361 | Brefeldin A esterase; serine hydrolase, degradatio | 99.65 | |
| 3trd_A | 208 | Alpha/beta hydrolase; cellular processes; 1.50A {C | 99.64 | |
| 1l7a_A | 318 | Cephalosporin C deacetylase; structural genomics, | 99.64 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.64 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 99.63 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 99.63 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 99.63 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.63 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.63 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 99.63 | |
| 3bjr_A | 283 | Putative carboxylesterase; structural genomics, jo | 99.62 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.62 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.62 | |
| 2hdw_A | 367 | Hypothetical protein PA2218; alpha/beta hydrolase | 99.61 | |
| 2b9v_A | 652 | Alpha-amino acid ester hydrolase; catalytic triad, | 99.61 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 99.6 | |
| 1mpx_A | 615 | Alpha-amino acid ester hydrolase; alpha/beta hydro | 99.6 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.58 | |
| 3h04_A | 275 | Uncharacterized protein; protein with unknown func | 99.58 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.58 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.58 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.58 | |
| 1auo_A | 218 | Carboxylesterase; hydrolase; 1.80A {Pseudomonas fl | 99.58 | |
| 1jji_A | 311 | Carboxylesterase; alpha-beta hydrolase fold, hydro | 99.58 | |
| 2wtm_A | 251 | EST1E; hydrolase; 1.60A {Clostridium proteoclastic | 99.57 | |
| 3hju_A | 342 | Monoglyceride lipase; alpha/beta hydrolase, hydrol | 99.57 | |
| 3vis_A | 306 | Esterase; alpha/beta-hydrolase fold, polyethylene | 99.57 | |
| 3d7r_A | 326 | Esterase; alpha/beta fold, hydrolase; 2.01A {Staph | 99.57 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 99.57 | |
| 1jfr_A | 262 | Lipase; serine hydrolase; 1.90A {Streptomyces exfo | 99.57 | |
| 4h0c_A | 210 | Phospholipase/carboxylesterase; PSI-biology, midwe | 99.56 | |
| 4fhz_A | 285 | Phospholipase/carboxylesterase; alpha/beta hydrola | 99.56 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 99.56 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.55 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.55 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.54 | |
| 3d0k_A | 304 | Putative poly(3-hydroxybutyrate) depolymerase LPQ; | 99.54 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.54 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 99.54 | |
| 2qm0_A | 275 | BES; alpha-beta structure, structural genomics, PS | 99.54 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.53 | |
| 3og9_A | 209 | Protein YAHD A copper inducible hydrolase; alpha/b | 99.53 | |
| 3u0v_A | 239 | Lysophospholipase-like protein 1; alpha, beta hydr | 99.53 | |
| 1sfr_A | 304 | Antigen 85-A; alpha/beta hydrolase, structural gen | 99.53 | |
| 1fj2_A | 232 | Protein (acyl protein thioesterase 1); alpha/beta | 99.53 | |
| 3nuz_A | 398 | Putative acetyl xylan esterase; structural genomic | 99.53 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 99.53 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.53 | |
| 3pfb_A | 270 | Cinnamoyl esterase; alpha/beta hydrolase fold, hyd | 99.53 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.52 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 99.52 | |
| 4e15_A | 303 | Kynurenine formamidase; alpha/beta hydrolase fold, | 99.52 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.52 | |
| 3c8d_A | 403 | Enterochelin esterase; alpha-beta-alpha sandwich, | 99.52 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 99.52 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 99.52 | |
| 3d59_A | 383 | Platelet-activating factor acetylhydrolase; secret | 99.5 | |
| 4fbl_A | 281 | LIPS lipolytic enzyme; thermostable, structural ge | 99.5 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 99.5 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.5 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 99.5 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.5 | |
| 3pe6_A | 303 | Monoglyceride lipase; alpha-beta hydrolase fold, 2 | 99.5 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 99.49 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.49 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.49 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 99.49 | |
| 3g8y_A | 391 | SUSD/RAGB-associated esterase-like protein; struct | 99.48 | |
| 2h1i_A | 226 | Carboxylesterase; structural genomics, PSI-2, prot | 99.48 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 99.48 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.47 | |
| 3iii_A | 560 | COCE/NOND family hydrolase; structural genomics, c | 99.47 | |
| 3cn9_A | 226 | Carboxylesterase; alpha/beta hydrolase fold super- | 99.47 | |
| 2gzs_A | 278 | IROE protein; enterobactin, salmochelin, DFP, hydr | 99.47 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.47 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.47 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.47 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 99.47 | |
| 1r88_A | 280 | MPT51/MPB51 antigen; ALFA/beta hydrolase fold, FBP | 99.46 | |
| 1lns_A | 763 | X-prolyl dipeptidyl aminopetidase; alpha beta hydr | 99.46 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.45 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.44 | |
| 3b5e_A | 223 | MLL8374 protein; NP_108484.1, carboxylesterase, st | 99.44 | |
| 1ufo_A | 238 | Hypothetical protein TT1662; alpha-beta fold, hydr | 99.44 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.44 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.44 | |
| 3mve_A | 415 | FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/ | 99.44 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.43 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.43 | |
| 3bdi_A | 207 | Uncharacterized protein TA0194; NP_393672.1, predi | 99.43 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.42 | |
| 4ezi_A | 377 | Uncharacterized protein; alpha-beta hydrolases fol | 99.42 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.42 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.42 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.42 | |
| 3fnb_A | 405 | Acylaminoacyl peptidase SMU_737; alpha-beta-alpha | 99.42 | |
| 2pbl_A | 262 | Putative esterase/lipase/thioesterase; alpha/beta- | 99.42 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.41 | |
| 1vkh_A | 273 | Putative serine hydrolase; structural genomics, jo | 99.41 | |
| 3llc_A | 270 | Putative hydrolase; structural genomics, joint cen | 99.41 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.41 | |
| 2qru_A | 274 | Uncharacterized protein; alpha/beta-hydrolase, str | 99.41 | |
| 1k8q_A | 377 | Triacylglycerol lipase, gastric; APHA beta hydrola | 99.4 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.4 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.39 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.39 | |
| 4fol_A | 299 | FGH, S-formylglutathione hydrolase; D-type esteras | 99.38 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 99.38 | |
| 3dkr_A | 251 | Esterase D; alpha beta hydrolase, mechanism, catal | 99.37 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.37 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.37 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.35 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.35 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 99.35 | |
| 2r8b_A | 251 | AGR_C_4453P, uncharacterized protein ATU2452; APC6 | 99.34 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.34 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.34 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 99.34 | |
| 3i2k_A | 587 | Cocaine esterase; alpha/beta hydrolase, hydrolase; | 99.34 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 99.33 | |
| 2fx5_A | 258 | Lipase; alpha-beta hydrolase; HET: TLA; 1.80A {Pse | 99.33 | |
| 3pic_A | 375 | CIP2; alpha/beta hydrolase fold, glucuronoyl ester | 99.33 | |
| 1qe3_A | 489 | PNB esterase, para-nitrobenzyl esterase; alpha-bet | 99.32 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 99.32 | |
| 1dqz_A | 280 | 85C, protein (antigen 85-C); fibronectin, structur | 99.32 | |
| 3rm3_A | 270 | MGLP, thermostable monoacylglycerol lipase; alpha/ | 99.31 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.31 | |
| 1qlw_A | 328 | Esterase; anisotropic refinement, atomic resolutio | 99.31 | |
| 4f0j_A | 315 | Probable hydrolytic enzyme; alpha/beta hydrolase f | 99.3 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 99.3 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.3 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.29 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 99.29 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.28 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.27 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.27 | |
| 3gff_A | 331 | IROE-like serine hydrolase; NP_718593.1, structura | 99.27 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.27 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 99.26 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.26 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.26 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 99.26 | |
| 1imj_A | 210 | CIB, CCG1-interacting factor B; alpha/beta hydrola | 99.26 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.26 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.25 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.25 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.25 | |
| 4g4g_A | 433 | 4-O-methyl-glucuronoyl methylesterase; alpha/beta | 99.25 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.24 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.24 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.24 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.23 | |
| 4f21_A | 246 | Carboxylesterase/phospholipase family protein; str | 99.23 | |
| 3vdx_A | 456 | Designed 16NM tetrahedral protein CAGE containing | 99.22 | |
| 2qjw_A | 176 | Uncharacterized protein XCC1541; putative hydrolas | 99.2 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.19 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 99.19 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.18 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.17 | |
| 3u1t_A | 309 | DMMA haloalkane dehalogenase; alpha/beta-hydrolase | 99.17 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.16 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.16 | |
| 2y6u_A | 398 | Peroxisomal membrane protein LPX1; hydrolase, puta | 99.15 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.15 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.14 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.14 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.14 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.13 | |
| 2h7c_A | 542 | Liver carboxylesterase 1; enzyme, cholesteryl este | 99.13 | |
| 3r0v_A | 262 | Alpha/beta hydrolase fold protein; structural geno | 99.12 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.11 | |
| 3hss_A | 293 | Putative bromoperoxidase; alpha beta hydrolase, ox | 99.11 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.11 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 99.11 | |
| 2ogt_A | 498 | Thermostable carboxylesterase EST50; alpha/beta hy | 99.11 | |
| 2ha2_A | 543 | ACHE, acetylcholinesterase; hydrolase fold, serine | 99.1 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.1 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 99.1 | |
| 3dqz_A | 258 | Alpha-hydroxynitrIle lyase-like protein; A/B-hydrl | 99.09 | |
| 2r11_A | 306 | Carboxylesterase NP; 2632844, putative hydrolase, | 99.09 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.08 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.08 | |
| 3qit_A | 286 | CURM TE, polyketide synthase; thioesterase, alpha/ | 99.08 | |
| 4g9e_A | 279 | AHL-lactonase, alpha/beta hydrolase fold protein; | 99.08 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.08 | |
| 2qs9_A | 194 | Retinoblastoma-binding protein 9; B5T overexpresse | 99.08 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.07 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.07 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.07 | |
| 3qvm_A | 282 | OLEI00960; structural genomics, PSI-biology, midwe | 99.07 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.07 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.07 | |
| 3i28_A | 555 | Epoxide hydrolase 2; aromatic hydrocarbons catabol | 99.07 | |
| 1tht_A | 305 | Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1. | 99.07 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.07 | |
| 3h2g_A | 397 | Esterase; xanthomonas oryzae PV. oryzae, cell WALL | 99.06 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.06 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.05 | |
| 3fsg_A | 272 | Alpha/beta superfamily hydrolase; PF00561, MCSG, P | 99.04 | |
| 3ia2_A | 271 | Arylesterase; alpha-beta hydrolase fold, transitio | 99.04 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.04 | |
| 1uxo_A | 192 | YDEN protein; hydrolase, A/B hydrolase, esterase, | 99.04 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.04 | |
| 1p0i_A | 529 | Cholinesterase; serine hydrolase, butyrate, hydrol | 99.04 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.03 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.03 | |
| 3kxp_A | 314 | Alpha-(N-acetylaminomethylene)succinic acid hydrol | 99.03 | |
| 3ibt_A | 264 | 1H-3-hydroxy-4-oxoquinoline 2,4-dioxygenase; QDO, | 99.03 | |
| 3sty_A | 267 | Methylketone synthase 1; alpha/beta hydrolase, dec | 99.02 | |
| 3guu_A | 462 | Lipase A; protein structure, hydrolase; HET: 1PE; | 99.02 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.02 | |
| 1ea5_A | 537 | ACHE, acetylcholinesterase; hydrolase, serine hydr | 99.01 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.01 | |
| 3kda_A | 301 | CFTR inhibitory factor (CIF); alpha/beta hydrolase | 99.0 | |
| 2rau_A | 354 | Putative esterase; NP_343859.1, putative lipase, s | 98.99 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 98.99 | |
| 1ukc_A | 522 | ESTA, esterase; fungi, A/B hydrolase fold, acetylc | 98.99 | |
| 2fj0_A | 551 | JuvenIle hormone esterase; manduca sexta, alpha-be | 98.98 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 98.98 | |
| 2e3j_A | 356 | Epoxide hydrolase EPHB; epoxide hydrolase B, struc | 98.98 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 98.97 | |
| 2ocg_A | 254 | Valacyclovir hydrolase; alpha beta hydrolase fold; | 98.97 | |
| 4dnp_A | 269 | DAD2; alpha/beta hydrolase, hydrolase; 2.15A {Petu | 98.97 | |
| 3e0x_A | 245 | Lipase-esterase related protein; APC60309, clostri | 98.97 | |
| 3oos_A | 278 | Alpha/beta hydrolase family protein; APC67239.0, p | 98.96 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 98.96 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 98.96 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 98.95 | |
| 2bce_A | 579 | Cholesterol esterase; hydrolase, serine esterase, | 98.95 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 98.95 | |
| 3om8_A | 266 | Probable hydrolase; structural genomics, PSI-2, pr | 98.95 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 98.94 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.94 | |
| 3g9x_A | 299 | Haloalkane dehalogenase; alpha/beta hydrolase, hel | 98.94 | |
| 1llf_A | 534 | Lipase 3; candida cylindracea cholesterol esterase | 98.93 | |
| 1dx4_A | 585 | ACHE, acetylcholinesterase; hydrolase, serine este | 98.93 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.93 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 98.92 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 98.91 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 98.91 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 98.91 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 98.91 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 98.91 | |
| 1tqh_A | 247 | Carboxylesterase precursor; tetrahedral intermedia | 98.91 | |
| 4fle_A | 202 | Esterase; structural genomics, PSI-biology, northe | 98.9 | |
| 3p2m_A | 330 | Possible hydrolase; alpha/beta hydrolase superfami | 98.89 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.89 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.88 | |
| 1zoi_A | 276 | Esterase; alpha/beta hydrolase fold; 1.60A {Pseudo | 98.88 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 98.88 | |
| 3v48_A | 268 | Aminohydrolase, putative aminoacrylate hydrolase R | 98.88 | |
| 1q0r_A | 298 | RDMC, aclacinomycin methylesterase; anthracycline, | 98.87 | |
| 1thg_A | 544 | Lipase; hydrolase(carboxylic esterase); HET: NAG N | 98.87 | |
| 1a88_A | 275 | Chloroperoxidase L; haloperoxidase, oxidoreductase | 98.86 | |
| 2pl5_A | 366 | Homoserine O-acetyltransferase; alpha/beta hydrola | 98.86 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 98.86 | |
| 3i1i_A | 377 | Homoserine O-acetyltransferase; structural genomic | 98.85 | |
| 1isp_A | 181 | Lipase; alpha/beta hydrolase fold, hydrolase; 1.30 | 98.85 | |
| 3fob_A | 281 | Bromoperoxidase; structural genomics, IDP00046, ba | 98.84 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 98.84 | |
| 3nwo_A | 330 | PIP, proline iminopeptidase; structural genomics, | 98.84 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 98.83 | |
| 2qmq_A | 286 | Protein NDRG2, protein NDR2; alpha/beta-hydrolases | 98.82 | |
| 3bdv_A | 191 | Uncharacterized protein DUF1234; DUF1234 family pr | 98.82 | |
| 3fla_A | 267 | RIFR; alpha-beta hydrolase thioesterase, hydrolase | 98.81 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.8 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 98.79 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 98.78 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 98.77 | |
| 2yys_A | 286 | Proline iminopeptidase-related protein; TTHA1809, | 98.77 | |
| 1a8s_A | 273 | Chloroperoxidase F; haloperoxidase, oxidoreductase | 98.77 | |
| 1wom_A | 271 | RSBQ, sigma factor SIGB regulation protein RSBQ; a | 98.76 | |
| 1ycd_A | 243 | Hypothetical 27.3 kDa protein in AAP1-SMF2 interge | 98.76 | |
| 2b61_A | 377 | Homoserine O-acetyltransferase; acyl-enzyme, aspar | 98.75 | |
| 2cjp_A | 328 | Epoxide hydrolase; HET: PG4 VPR; 1.95A {Solanum tu | 98.75 | |
| 3bf7_A | 255 | Esterase YBFF; thioesterase, helical CAP, hydrolas | 98.75 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 98.74 | |
| 1mtz_A | 293 | Proline iminopeptidase; alpha-beta hydrolase, CAP | 98.74 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.73 | |
| 3bwx_A | 285 | Alpha/beta hydrolase; YP_496220.1, joint center fo | 98.73 | |
| 2qvb_A | 297 | Haloalkane dehalogenase 3; RV2579, alpha-beta hydr | 98.72 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.72 | |
| 1a8q_A | 274 | Bromoperoxidase A1; haloperoxidase, oxidoreductase | 98.71 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.7 | |
| 1azw_A | 313 | Proline iminopeptidase; aminopeptidase, serine pro | 98.7 | |
| 1wm1_A | 317 | Proline iminopeptidase; complex with inhibitor, hy | 98.7 | |
| 3bix_A | 574 | Neuroligin-1, neuroligin I; esterase domain, alpha | 98.7 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 98.7 | |
| 1j1i_A | 296 | META cleavage compound hydrolase; carbazole degrad | 98.69 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 98.68 | |
| 1mj5_A | 302 | 1,3,4,6-tetrachloro-1,4-cyclohexadiene hydrolase; | 98.67 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.66 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 98.66 | |
| 2xt0_A | 297 | Haloalkane dehalogenase; hydrolase, alpha-beta hyd | 98.65 | |
| 1brt_A | 277 | Bromoperoxidase A2; haloperoxidase, oxidoreductase | 98.63 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 98.63 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 98.62 | |
| 2xua_A | 266 | PCAD, 3-oxoadipate ENOL-lactonase; hydrolase, cate | 98.61 | |
| 2wfl_A | 264 | Polyneuridine-aldehyde esterase; alkaloid metaboli | 98.61 | |
| 1hkh_A | 279 | Gamma lactamase; hydrolase, alpha/beta hydrolase, | 98.61 | |
| 1b6g_A | 310 | Haloalkane dehalogenase; hydrolase, alpha/beta-hyd | 98.6 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 98.59 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.59 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.59 | |
| 2d81_A | 318 | PHB depolymerase; alpha/beta hydrolase fold, circu | 98.58 | |
| 3r40_A | 306 | Fluoroacetate dehalogenase; FACD, defluorinase, al | 98.58 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 98.58 | |
| 2wue_A | 291 | 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrolas | 98.56 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.56 | |
| 1xkl_A | 273 | SABP2, salicylic acid-binding protein 2; alpha-bet | 98.56 | |
| 2q0x_A | 335 | Protein DUF1749, uncharacterized protein; alpha/be | 98.55 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 98.55 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.53 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 98.52 | |
| 2xmz_A | 269 | Hydrolase, alpha/beta hydrolase fold family; menaq | 98.52 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.51 | |
| 1ehy_A | 294 | Protein (soluble epoxide hydrolase); alpha/beta hy | 98.51 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.5 | |
| 3c6x_A | 257 | Hydroxynitrilase; atomic resolution, hydroxynitril | 98.5 | |
| 2wj6_A | 276 | 1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase; oxid | 98.49 | |
| 2puj_A | 286 | 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrola; | 98.48 | |
| 1c4x_A | 285 | BPHD, protein (2-hydroxy-6-OXO-6-phenylhexa-2,4-di | 98.47 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.47 | |
| 1ys1_X | 320 | Lipase; CIS peptide Leu 234, Ca2+ ION, inhibitor h | 98.47 | |
| 1tca_A | 317 | Lipase; hydrolase(carboxylic esterase); HET: NAG; | 98.45 | |
| 4i19_A | 388 | Epoxide hydrolase; structural genomics, PSI-biolog | 98.44 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.44 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 98.44 | |
| 3n2z_B | 446 | Lysosomal Pro-X carboxypeptidase; alpha/beta hydro | 98.44 | |
| 2vat_A | 444 | Acetyl-COA--deacetylcephalosporin C acetyltransfer | 98.43 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.42 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 98.41 | |
| 1iup_A | 282 | META-cleavage product hydrolase; aromatic compound | 98.41 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 98.4 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 98.4 | |
| 1pja_A | 302 | Palmitoyl-protein thioesterase 2 precursor; hydrol | 98.4 | |
| 3afi_E | 316 | Haloalkane dehalogenase; A/B-hydrolase, hydrolase; | 98.4 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 98.4 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 98.38 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 98.38 | |
| 1r3d_A | 264 | Conserved hypothetical protein VC1974; structural | 98.37 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.37 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 98.35 | |
| 3l80_A | 292 | Putative uncharacterized protein SMU.1393C; alpha/ | 98.33 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.33 | |
| 1bu8_A | 452 | Protein (pancreatic lipase related protein 2); hyd | 98.32 | |
| 3qmv_A | 280 | Thioesterase, REDJ; alpha/beta hydrolase fold, hyd | 98.32 | |
| 1gpl_A | 432 | RP2 lipase; serine esterase, hydrolase, lipid degr | 98.31 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 98.31 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 98.3 | |
| 2psd_A | 318 | Renilla-luciferin 2-monooxygenase; alpha/beta-hydr | 98.3 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.3 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 98.29 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 98.29 | |
| 1u2e_A | 289 | 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase | 98.29 | |
| 3ds8_A | 254 | LIN2722 protein; unkonwn function, structural geno | 98.29 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 98.29 | |
| 1ex9_A | 285 | Lactonizing lipase; alpha-beta hydrolase fold, pho | 98.28 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.28 | |
| 3icv_A | 316 | Lipase B, CALB; circular permutation, cleavage on | 98.28 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 98.27 | |
| 3qyj_A | 291 | ALR0039 protein; alpha/beta fold, hydrolase; 1.78A | 98.25 | |
| 1m33_A | 258 | BIOH protein; alpha-betta-alpha sandwich, structur | 98.24 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 98.24 | |
| 1w52_X | 452 | Pancreatic lipase related protein 2; detergent, cl | 98.24 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 98.22 | |
| 3c5v_A | 316 | PME-1, protein phosphatase methylesterase 1; demet | 98.22 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 98.22 | |
| 3lcr_A | 319 | Tautomycetin biosynthetic PKS; alpha-beta hydrolas | 98.22 | |
| 3g02_A | 408 | Epoxide hydrolase; alpha/beta hydrolase fold, enan | 98.21 | |
| 3b12_A | 304 | Fluoroacetate dehalogenase; dehalogease, hydrolase | 97.51 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 98.19 | |
| 1hpl_A | 449 | Lipase; hydrolase(carboxylic esterase); 2.30A {Equ | 98.15 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 98.14 | |
| 3fle_A | 249 | SE_1780 protein; structural genomics, APC61035.1, | 98.11 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.09 | |
| 2x5x_A | 342 | PHB depolymerase PHAZ7; biopolymers, oxyanion HOLE | 98.09 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 98.08 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 98.08 | |
| 1rp1_A | 450 | Pancreatic lipase related protein 1; hydrolase, li | 98.05 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 98.04 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 97.99 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 97.95 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 97.93 | |
| 2dst_A | 131 | Hypothetical protein TTHA1544; conserved hypotheti | 97.92 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 97.91 | |
| 2zyr_A | 484 | Lipase, putative; fatty acid, hydrolase; HET: 1PE; | 97.89 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 97.85 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 97.84 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 97.83 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 97.82 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 97.82 | |
| 1kez_A | 300 | Erythronolide synthase; polyketide synthase, modul | 97.78 | |
| 3ils_A | 265 | PKS, aflatoxin biosynthesis polyketide synthase; A | 97.78 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 97.71 | |
| 3lp5_A | 250 | Putative cell surface hydrolase; structural genom | 97.69 | |
| 1ei9_A | 279 | Palmitoyl protein thioesterase 1; alpha/beta hydro | 97.69 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 97.64 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 97.63 | |
| 4ebb_A | 472 | Dipeptidyl peptidase 2; hydrolase; HET: MSE NAG; 2 | 97.57 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 97.5 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 97.43 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 97.41 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 97.41 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 97.35 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 97.31 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 97.29 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 97.23 | |
| 3tej_A | 329 | Enterobactin synthase component F; nonribosomal pe | 97.23 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 97.2 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.18 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 97.15 | |
| 2hih_A | 431 | Lipase 46 kDa form; A1 phospholipase, phospholipid | 97.14 | |
| 2dsn_A | 387 | Thermostable lipase; T1 lipase, hydrolase; 1.50A { | 96.97 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 96.95 | |
| 2hfk_A | 319 | Pikromycin, type I polyketide synthase pikaiv; alp | 96.86 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 96.7 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 96.67 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 96.66 |
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-51 Score=470.51 Aligned_cols=567 Identities=13% Similarity=0.047 Sum_probs=393.0
Q ss_pred ceeEeecCCCCCCCCeeeeecCCCCC--cc--cceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCC
Q 005240 6 GIGIHRLLPDDSLGPEKEVHGYPDGA--KI--NFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESP 81 (706)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~i~~~~~~~--~~--~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~ 81 (706)
+|+++++.+ |+.+++....... .+ ..+.|||||++|||..+... ....+...++|++|+++++.++|+...
T Consensus 37 ~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~-~~r~~~~~~~~~~d~~~~~~~~l~~~~ 111 (740)
T 4a5s_A 37 NILVFNAEY----GNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVK-QWRHSYTASYDIYDLNKRQLITEERIP 111 (740)
T ss_dssp EEEEEETTT----CCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEE-CSSSCEEEEEEEEETTTTEECCSSCCC
T ss_pred cEEEEECCC----CceEEEEechhhhhhcccccceEECCCCCEEEEEECCee-eEEEccceEEEEEECCCCcEEEcccCC
Confidence 588999977 8877764322211 22 23899999999999876211 111133478999999999999987654
Q ss_pred CccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEE
Q 005240 82 DICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (706)
Q Consensus 82 ~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~ 161 (706)
.. +..++|||||++|+|..+ ..||+
T Consensus 112 ~~-----~~~~~~SPdG~~la~~~~--------------------------------------------------~~i~~ 136 (740)
T 4a5s_A 112 NN-----TQWVTWSPVGHKLAYVWN--------------------------------------------------NDIYV 136 (740)
T ss_dssp TT-----EEEEEECSSTTCEEEEET--------------------------------------------------TEEEE
T ss_pred Cc-----ceeeEECCCCCEEEEEEC--------------------------------------------------CeEEE
Confidence 43 678999999999999842 57999
Q ss_pred Ecc-CCCceecCCCc---eE-----------------eeeeeCCCCcEEEEEeeccCcc--ccc----------c-----
Q 005240 162 GSL-DGTAKDFGTPA---VY-----------------TAVEPSPDQKYVLITSMHRPYS--YKV----------P----- 203 (706)
Q Consensus 162 ~~l-~g~~~~lt~~~---~~-----------------~~~~~SpDG~~i~~~~~~~~~~--~~~----------~----- 203 (706)
+++ +|+.++|+..+ .+ ..+.|||||++|+|.+.+...- +.. +
T Consensus 137 ~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~ 216 (740)
T 4a5s_A 137 KIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRV 216 (740)
T ss_dssp ESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEE
T ss_pred EECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceee
Confidence 999 55888887641 11 2488999999999987654310 000 0
Q ss_pred ----cc--cccceEEEEecCC---C---eeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccc
Q 005240 204 ----CA--RFSQKVQVWTTDG---K---LVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVE 271 (706)
Q Consensus 204 ----~~--~~~~~i~~~~~~~---~---~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~ 271 (706)
.. .....|++|++++ + +.+++.......... .....++|||||+. +++..+...
T Consensus 217 ~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~-------~~~~~~~wspdg~~-~~~~~~r~~------ 282 (740)
T 4a5s_A 217 PYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGD-------HYLCDVTWATQERI-SLQWLRRIQ------ 282 (740)
T ss_dssp ECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSC-------EEEEEEEEEETTEE-EEEEEESST------
T ss_pred cCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCC-------eEEEEEEEeCCCeE-EEEEeCCCC------
Confidence 00 0113799999998 6 555554311000000 11336799999985 555543321
Q ss_pred cCccceeeeecCCCCCCCC-------ceEEe--ecccc-----cccceecCCCceEE-EEeeccccceEEEEEcCCCCCC
Q 005240 272 VSPRDIIYTQPAEPAEGEK-------PEILH--KLDLR-----FRSVSWCDDSLALV-NETWYKTSQTRTWLVCPGSKDV 336 (706)
Q Consensus 272 ~~~~~~l~~~d~~~~~~~~-------~~~l~--~~~~~-----~~~~~wspDg~~l~-~~~~~~~~~~~l~~~d~~~~~~ 336 (706)
+...|+++|+ ++++ .+++. ..... ...|.|||||+.|+ +.+ ..++..+||++|+++ +
T Consensus 283 --~~~~i~~~d~---~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s-~~~G~~~l~~~~~~~--~ 354 (740)
T 4a5s_A 283 --NYSVMDICDY---DESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIIS-NEEGYRHICYFQIDK--K 354 (740)
T ss_dssp --TEEEEEEEEE---ETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEE-CTTSCEEEEEEETTC--S
T ss_pred --CEEEEEEEEC---CCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEE-cCCCceEEEEEECCC--C
Confidence 2235889998 6666 34442 22222 34799999999988 554 455788999999998 4
Q ss_pred CceeeecCcccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCcee-eeecccc
Q 005240 337 APRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKE-RIWESNR 415 (706)
Q Consensus 337 ~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~-~l~~~~~ 415 (706)
+.++|+....... ..+++||+.|+|..... +. +....+||++++++++.+ .|+..-.
T Consensus 355 ~~~~lT~g~~~v~--------~~~~~d~~~i~f~~~~~------------~~--~~~~~~ly~v~~~g~~~~~~lt~~~~ 412 (740)
T 4a5s_A 355 DCTFITKGTWEVI--------GIEALTSDYLYYISNEY------------KG--MPGGRNLYKIQLIDYTKVTCLSCELN 412 (740)
T ss_dssp SCEESCCSSSCEE--------EEEEECSSEEEEEESCG------------GG--CTTCBEEEEEETTEEEEEEESSTTTS
T ss_pred ceEecccCCEEEE--------EEEEEeCCEEEEEEecC------------CC--CCceeEEEEEECCCCCcceeeccccC
Confidence 5778765543211 11346688888876320 00 134568999999876544 4442100
Q ss_pred hhhhhhhhhhccCCCceecccCCCEEEEEEecCCCCcEEEEEECCCCceeEeecCCCCC----CCCCCCceEEEEEEccC
Q 005240 416 EKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPY----PTLASLQKEMIKYQRKD 491 (706)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~p~~v~~~~~~~~~~~~lt~~~~~~----~~~~~~~~~~~~~~~~d 491 (706)
. -......++||||++++++++++.. |+.++++++.+++..++...|... ........+.+++ ..|
T Consensus 413 ~--------~~~~~~~~~~S~dg~~~~~~~s~~~-~p~~~l~~~~~~~~~~~l~~n~~~~~~~~~~~~~~~~~~~~-~~d 482 (740)
T 4a5s_A 413 P--------ERCQYYSVSFSKEAKYYQLRCSGPG-LPLYTLHSSVNDKGLRVLEDNSALDKMLQNVQMPSKKLDFI-ILN 482 (740)
T ss_dssp T--------TTBCBEEEEECTTSSEEEEEECSBS-SCEEEEEETTTTEEEEEEECCHHHHHHHTTEECCEEEEEEE-EET
T ss_pred C--------CCCceEEEEECCCCCEEEEEeCCCC-CCEEEEEECCCCcEEEEeccChhhhhhhhhccCCccEEEEE-ccC
Confidence 0 0012346899999999999999886 889999999888877777655332 2233456778888 679
Q ss_pred CeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHH-CCeEEEEcCCCCcCCCC
Q 005240 492 GVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA-RRFAVLAGPSIPIIGEG 570 (706)
Q Consensus 492 g~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~G~~v~~~~~~~~~g~g 570 (706)
|.++++++++|+++++.+ ++|+||++|||+... .+... +...+...|++ +||+|++++++|..++|
T Consensus 483 g~~l~~~~~~P~~~~~~~--~~P~vv~~HGg~~~~-----~~~~~------~~~~~~~~l~~~~G~~Vv~~D~rG~g~~g 549 (740)
T 4a5s_A 483 ETKFWYQMILPPHFDKSK--KYPLLLDVYAGPCSQ-----KADTV------FRLNWATYLASTENIIVASFDGRGSGYQG 549 (740)
T ss_dssp TEEEEEEEEECTTCCTTS--CEEEEEECCCCTTCC-----CCCCC------CCCSHHHHHHHTTCCEEEEECCTTCSSSC
T ss_pred CeEEEEEEEeCCCCCCCC--CccEEEEECCCCccc-----ccccc------cCcCHHHHHHhcCCeEEEEEcCCCCCcCC
Confidence 999999999999987654 599999999987431 11111 12234556664 99999999998776555
Q ss_pred CCCCc---hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCCCCCC-----
Q 005240 571 DKLPN---DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLT----- 642 (706)
Q Consensus 571 ~~~~~---~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d~~~~----- 642 (706)
..+.. ..+....++|+.+++++|.+++++|++||+|+|+||||++|++++.++|++|+|+++.+|+.++...
T Consensus 550 ~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~ 629 (740)
T 4a5s_A 550 DKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYT 629 (740)
T ss_dssp HHHHGGGTTCTTSHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHTTTCSCCSEEEEESCCCCGGGSBHHHH
T ss_pred hhHHHHHHhhhCcccHHHHHHHHHHHHhcCCcCCccEEEEEECHHHHHHHHHHHhCCCceeEEEEcCCccchHHhhhHHH
Confidence 44322 1233456899999999999888899999999999999999999999999999999999998764310
Q ss_pred ------C-------------------------cc------------chHHHHHHHHHhCCCcEEEEEeCCCCccCCCccc
Q 005240 643 ------P-------------------------FG------------FQAERFFDALKGHGALSRLVLLPFEHHVYAAREN 679 (706)
Q Consensus 643 ------~-------------------------~~------------~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~ 679 (706)
| .. -+..+++++|+..++++++++||+++|.+.....
T Consensus 630 ~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~P~Lii~G~~D~~v~~~~~~~l~~~l~~~g~~~~~~~~~~~~H~~~~~~~ 709 (740)
T 4a5s_A 630 ERYMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWYTDEDHGIASSTA 709 (740)
T ss_dssp HHHHCCSSTTTTHHHHHHSCSGGGGGGGGGSEEEEEEETTCSSSCTHHHHHHHHHHHHTTCCCEEEEETTCCTTCCSHHH
T ss_pred HHHcCCCCccccHHHHHhCCHHHHHhcCCCCcEEEEEcCCCCccCHHHHHHHHHHHHHCCCCeEEEEECCCCCcCCCCcc
Confidence 1 00 0223899999999999999999999999966667
Q ss_pred HHHHHHHHHHHHHHHhccCC
Q 005240 680 VMHVIWETDRWLQKYCLSNT 699 (706)
Q Consensus 680 ~~~~~~~~~~f~~~~l~~~~ 699 (706)
..++++.+.+||+++|....
T Consensus 710 ~~~~~~~i~~fl~~~l~~~~ 729 (740)
T 4a5s_A 710 HQHIYTHMSHFIKQCFSLPA 729 (740)
T ss_dssp HHHHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHHHHcCCCC
Confidence 78999999999999997544
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-47 Score=444.84 Aligned_cols=548 Identities=16% Similarity=0.178 Sum_probs=385.1
Q ss_pred cceeEeecCCCCCCCCeeeeecCCCC-----------------------CcccceeeCCCCCeEEEEeeccccccccCCc
Q 005240 5 TGIGIHRLLPDDSLGPEKEVHGYPDG-----------------------AKINFVSWSPDGKRIAFSVRVDEEDNVSSCK 61 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~i~~~~~~-----------------------~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~ 61 (706)
..|++.+++. |+.+++...... ..+..++|||||++|+|...
T Consensus 64 ~~i~~~d~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~----------- 128 (741)
T 2ecf_A 64 LDLWSYDIGS----GQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQRLLFPLG----------- 128 (741)
T ss_dssp EEEEEEETTT----CCEEEEECGGGTC--------------------CCEESCCCEECTTSSEEEEEET-----------
T ss_pred cEEEEEECCC----CceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCCCEEEEEeC-----------
Confidence 4789999977 888877643221 12678999999999999752
Q ss_pred eeEEEEEcCCC---ceeecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccc
Q 005240 62 LRVWIADAETG---EAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMT 138 (706)
Q Consensus 62 ~~l~~~d~~~g---~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (706)
.+||++|++++ +.++++..... +..+.|||||++|+|.+.
T Consensus 129 ~~i~~~d~~~~~~~~~~~l~~~~~~-----~~~~~~SPDG~~la~~~~-------------------------------- 171 (741)
T 2ecf_A 129 GELYLYDLKQEGKAAVRQLTHGEGF-----ATDAKLSPKGGFVSFIRG-------------------------------- 171 (741)
T ss_dssp TEEEEEESSSCSTTSCCBCCCSSSC-----EEEEEECTTSSEEEEEET--------------------------------
T ss_pred CcEEEEECCCCCcceEEEcccCCcc-----cccccCCCCCCEEEEEeC--------------------------------
Confidence 68999999998 88888755433 678999999999999742
Q ss_pred hhccCCchhhhhhhhcccceEEEEccC-CCceecCCC-ce-----------------EeeeeeCCCCcEEEEEeeccCcc
Q 005240 139 DNLLKDEYDESLFDYYTTAQLVLGSLD-GTAKDFGTP-AV-----------------YTAVEPSPDQKYVLITSMHRPYS 199 (706)
Q Consensus 139 ~~~~~~~~d~~~~~~~~~~~l~~~~l~-g~~~~lt~~-~~-----------------~~~~~~SpDG~~i~~~~~~~~~~ 199 (706)
.+||+++++ |+.++++.. .. ...++|||||++|+|.+......
T Consensus 172 ------------------~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~ 233 (741)
T 2ecf_A 172 ------------------RNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPV 233 (741)
T ss_dssp ------------------TEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTS
T ss_pred ------------------CcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCC
Confidence 479999994 577777654 11 36799999999999987653210
Q ss_pred cc---------------c--c---cccccceEEEEecCC-CeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEE
Q 005240 200 YK---------------V--P---CARFSQKVQVWTTDG-KLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLY 258 (706)
Q Consensus 200 ~~---------------~--~---~~~~~~~i~~~~~~~-~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~ 258 (706)
.. . + .......|++|++++ ++.+.+....... .....++| |||+. |+
T Consensus 234 ~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~----------~~~~~~~~-pDg~~-l~ 301 (741)
T 2ecf_A 234 PVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQD----------IYLARVNW-RDPQH-LS 301 (741)
T ss_dssp CEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSS----------EEEEEEEE-EETTE-EE
T ss_pred ceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcc----------eEEEEEEe-CCCCE-EE
Confidence 00 0 0 000123899999998 8776664331110 12347899 99998 77
Q ss_pred EEEeccCCCCccccCccceeeeecCCCCCCCCceEEeeccc-----ccccceecCCCceEEEEeeccccceEEEEEcCCC
Q 005240 259 WVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDL-----RFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (706)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~-----~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~ 333 (706)
+....... ....|+++|+ ++++.+.+..... .+..+.|||||+ +++.+.. ++..+||.+++++
T Consensus 302 ~~~~~~~~-------~~~~i~~~d~---~~g~~~~~~~~~~~~~~~~~~~~~~spdg~-~~~~~~~-~g~~~l~~~~~~~ 369 (741)
T 2ecf_A 302 FQRQSRDQ-------KKLDLVEVTL---ASNQQRVLAHETSPTWVPLHNSLRFLDDGS-ILWSSER-TGFQHLYRIDSKG 369 (741)
T ss_dssp EEEEETTS-------SEEEEEEEET---TTCCEEEEEEEECSSCCCCCSCCEECTTSC-EEEEECT-TSSCEEEEECSSS
T ss_pred EEEecccC-------CeEEEEEEEC---CCCceEEEEEcCCCCcCCcCCceEECCCCe-EEEEecC-CCccEEEEEcCCC
Confidence 66432111 2236999998 6777777654322 346899999999 5555433 4567899999876
Q ss_pred CCCCceeeecCcccccccCCCCCce-EeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeeec
Q 005240 334 KDVAPRVLFDRVFENVYSDPGSPMM-TRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWE 412 (706)
Q Consensus 334 ~~~~~~~l~~~~~~~~~~~~~~~~~-~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~ 412 (706)
. .+.++..... ...+ .|||||++|++..... + ....+||.++.+++..++|..
T Consensus 370 --~-~~~l~~~~~~-------v~~~~~~s~dg~~l~~~~~~~------------~----~~~~~l~~~~~~g~~~~~l~~ 423 (741)
T 2ecf_A 370 --K-AAALTHGNWS-------VDELLAVDEKAGLAYFRAGIE------------S----ARESQIYAVPLQGGQPQRLSK 423 (741)
T ss_dssp --C-EEESCCSSSC-------EEEEEEEETTTTEEEEEECSS------------C----TTCBEEEEEETTCCCCEECCC
T ss_pred --C-eeeeeecceE-------EEeEeEEeCCCCEEEEEEeCC------------C----CceEEEEEEEcCCCCeeeccc
Confidence 3 4555432211 1123 4899999998876321 0 113457777776554555643
Q ss_pred ccchhhhhhhhhhccCCCceecccCCCEEEEEEecCCCCcEEEEEECCCCceeEeecCCC-----CCCCC--CCCceEEE
Q 005240 413 SNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPH-----PYPTL--ASLQKEMI 485 (706)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~p~~v~~~~~~~~~~~~lt~~~~-----~~~~~--~~~~~~~~ 485 (706)
.. ....++|||||++|+++.++...|++++++++.++..+.|+..+. .+... .....+.+
T Consensus 424 ~~-------------~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (741)
T 2ecf_A 424 AP-------------GMHSASFARNASVYVDSWSNNSTPPQIELFRANGEKIATLVENDLADPKHPYARYREAQRPVEFG 490 (741)
T ss_dssp SC-------------SEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSCEEECSSCCCSSSTTSTTHHHHTTCCCEEEE
T ss_pred CC-------------CceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCCeEEEeccCcccccccchhhhhccCCCcEEE
Confidence 21 123579999999999999999999999999987766666654322 11122 34578999
Q ss_pred EEEccCC-eEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCc-hHHHHHHHCCeEEEEcCC
Q 005240 486 KYQRKDG-VPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTP-TSSLIFLARRFAVLAGPS 563 (706)
Q Consensus 486 ~~~~~dg-~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~G~~v~~~~~ 563 (706)
++++.|| ..|+++++.|+++++++ ++|+||++||++... .+... +..... .+++.|+++||+|+.++.
T Consensus 491 ~~~~~~g~~~l~~~~~~P~~~~~~~--~~p~vv~~hG~~~~~-----~~~~~---~~~~~~~~~~~~l~~~G~~v~~~d~ 560 (741)
T 2ecf_A 491 TLTAADGKTPLNYSVIKPAGFDPAK--RYPVAVYVYGGPASQ-----TVTDS---WPGRGDHLFNQYLAQQGYVVFSLDN 560 (741)
T ss_dssp EEECTTSSCEEEEEEECCSSCCTTS--CEEEEEECCCSTTCC-----SCSSC---CCCSHHHHHHHHHHHTTCEEEEECC
T ss_pred EEEcCCCCEEEEEEEEeCCCCCCCC--CcCEEEEEcCCCCcc-----ccccc---ccccchhHHHHHHHhCCCEEEEEec
Confidence 9999999 99999999999865443 589999999986421 00111 110000 367888999999999888
Q ss_pred CCcCCCCCCCC---chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCCCC
Q 005240 564 IPIIGEGDKLP---NDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKT 640 (706)
Q Consensus 564 ~~~~g~g~~~~---~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d~~ 640 (706)
+|..+.+..+. ...+....+.|+.+++++|.+++.+|++||+|+||||||++++.++.++|++|+|+++.+|+.++.
T Consensus 561 rG~g~s~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~ 640 (741)
T 2ecf_A 561 RGTPRRGRDFGGALYGKQGTVEVADQLRGVAWLKQQPWVDPARIGVQGWSNGGYMTLMLLAKASDSYACGVAGAPVTDWG 640 (741)
T ss_dssp TTCSSSCHHHHHTTTTCTTTHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHCTTTCSEEEEESCCCCGG
T ss_pred CCCCCCChhhhHHHhhhcccccHHHHHHHHHHHHhcCCCChhhEEEEEEChHHHHHHHHHHhCCCceEEEEEcCCCcchh
Confidence 76544332211 112223458999999999999888999999999999999999999999999999999999987643
Q ss_pred CC-----------Ccc----------------------------------chHHHHHHHHHhCCCcEEEEEeCCCCccCC
Q 005240 641 LT-----------PFG----------------------------------FQAERFFDALKGHGALSRLVLLPFEHHVYA 675 (706)
Q Consensus 641 ~~-----------~~~----------------------------------~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~ 675 (706)
.. +.. .+.++++++|...++++++++||+++|.+.
T Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~ 720 (741)
T 2ecf_A 641 LYDSHYTERYMDLPARNDAGYREARVLTHIEGLRSPLLLIHGMADDNVLFTNSTSLMSALQKRGQPFELMTYPGAKHGLS 720 (741)
T ss_dssp GSBHHHHHHHHCCTGGGHHHHHHHCSGGGGGGCCSCEEEEEETTCSSSCTHHHHHHHHHHHHTTCCCEEEEETTCCSSCC
T ss_pred hhccccchhhcCCcccChhhhhhcCHHHHHhhCCCCEEEEccCCCCCCCHHHHHHHHHHHHHCCCceEEEEECCCCCCCC
Confidence 10 000 022389999999999999999999999987
Q ss_pred CcccHHHHHHHHHHHHHHHhc
Q 005240 676 ARENVMHVIWETDRWLQKYCL 696 (706)
Q Consensus 676 ~~~~~~~~~~~~~~f~~~~l~ 696 (706)
.... .++++.+.+||+++|+
T Consensus 721 ~~~~-~~~~~~i~~fl~~~l~ 740 (741)
T 2ecf_A 721 GADA-LHRYRVAEAFLGRCLK 740 (741)
T ss_dssp HHHH-HHHHHHHHHHHHHHHC
T ss_pred CCch-hHHHHHHHHHHHHhcC
Confidence 4322 7889999999999985
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-47 Score=436.04 Aligned_cols=524 Identities=15% Similarity=0.132 Sum_probs=371.2
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~ 111 (706)
.+..++|||| ++|+|+. + ..||++|+++++.++++..... +..+.|||||++|++...
T Consensus 83 ~v~~~~~spd-~~~~~~~---------~--~~i~~~d~~~~~~~~l~~~~~~-----~~~~~~SpdG~~la~~~~----- 140 (706)
T 2z3z_A 83 PSFRTLDAGR-GLVVLFT---------Q--GGLVGFDMLARKVTYLFDTNEE-----TASLDFSPVGDRVAYVRN----- 140 (706)
T ss_dssp CCEEEEETTT-TEEEEEE---------T--TEEEEEETTTTEEEEEECCTTC-----CTTCEECTTSSEEEEEET-----
T ss_pred CceeEEECCC-CeEEEEE---------C--CEEEEEECCCCceEEccCCccc-----ccCCcCCCCCCEEEEEEC-----
Confidence 4788999999 8898864 2 6899999999998888755433 678999999999998631
Q ss_pred CCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-C-----CCceecCCC-ce--------
Q 005240 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-D-----GTAKDFGTP-AV-------- 176 (706)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~-----g~~~~lt~~-~~-------- 176 (706)
..|+++++ + |+.++++.. ..
T Consensus 141 ---------------------------------------------~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~ 175 (706)
T 2z3z_A 141 ---------------------------------------------HNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAV 175 (706)
T ss_dssp ---------------------------------------------TEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCC
T ss_pred ---------------------------------------------CeEEEEecCcccccCCCcEEeccCCCCCeEcccch
Confidence 57999998 6 777777655 22
Q ss_pred -------EeeeeeCCCCcEEEEEeeccCccccc---------------c-----cccccceEEEEecCCCeeEEcccCCC
Q 005240 177 -------YTAVEPSPDQKYVLITSMHRPYSYKV---------------P-----CARFSQKVQVWTTDGKLVRELCDLPP 229 (706)
Q Consensus 177 -------~~~~~~SpDG~~i~~~~~~~~~~~~~---------------~-----~~~~~~~i~~~~~~~~~~~~l~~~~~ 229 (706)
+..+.|||||++|++.+.+....... . .......|++||+++++.+.+.....
T Consensus 176 ~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~ 255 (706)
T 2z3z_A 176 HQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEP 255 (706)
T ss_dssp GGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSC
T ss_pred hhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCC
Confidence 37899999999999987432100000 0 00113679999999888777654321
Q ss_pred CCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCC-CceEEeec-c-c---cccc
Q 005240 230 AEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGE-KPEILHKL-D-L---RFRS 303 (706)
Q Consensus 230 ~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~~~~l~~~-~-~---~~~~ 303 (706)
.. ..+..+.|||||+. |++... +... ....|+++|+ +++ +.+.+... . . ....
T Consensus 256 ~~----------~~~~~~~~spdg~~-l~~~~~-~~~~------~~~~v~~~d~---~~g~~~~~~~~~~~~~~~~~~~~ 314 (706)
T 2z3z_A 256 KE----------KFLTNLSWSPDENI-LYVAEV-NRAQ------NECKVNAYDA---ETGRFVRTLFVETDKHYVEPLHP 314 (706)
T ss_dssp TT----------CEEEEEEECTTSSE-EEEEEE-CTTS------CEEEEEEEET---TTCCEEEEEEEEECSSCCCCCSC
T ss_pred Cc----------eeEeeEEEECCCCE-EEEEEe-CCCC------CeeEEEEEEC---CCCceeeEEEEccCCCeECccCC
Confidence 11 12347899999997 776532 1111 2236899998 666 55555432 1 1 1357
Q ss_pred ceecC--CCceEEEEeeccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCc-eEeccCCCEEEEeeeccCCcceE
Q 005240 304 VSWCD--DSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPM-MTRTSTGTNVIAKIKKENDEQIY 380 (706)
Q Consensus 304 ~~wsp--Dg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~s~dg~~l~~~~~~~~~~~~~ 380 (706)
+.|+| ||+.|+. +.. ++..+||.++.++ +..+.++..... ... +.|+|||++|++.....
T Consensus 315 ~~~sp~~dg~~l~~-~~~-~g~~~l~~~~~~~--~~~~~l~~~~~~-------v~~~~~~spdg~~l~~~~~~~------ 377 (706)
T 2z3z_A 315 LTFLPGSNNQFIWQ-SRR-DGWNHLYLYDTTG--RLIRQVTKGEWE-------VTNFAGFDPKGTRLYFESTEA------ 377 (706)
T ss_dssp CEECTTCSSEEEEE-ECT-TSSCEEEEEETTS--CEEEECCCSSSC-------EEEEEEECTTSSEEEEEESSS------
T ss_pred ceeecCCCCEEEEE-Ecc-CCccEEEEEECCC--CEEEecCCCCeE-------EEeeeEEcCCCCEEEEEecCC------
Confidence 89999 9985544 333 3567899999766 344555432211 111 57899999998876321
Q ss_pred EEEecCCCCCCCCCCceeeeecCCCceeeeecccchhhhhhhhhhccCCCceecccCCCEEEEEEecCCCCcEEEEEECC
Q 005240 381 ILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWP 460 (706)
Q Consensus 381 ~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~p~~v~~~~~~ 460 (706)
+ .....||.+|+++++.+++.... ....++|||||++++++.++...|++++++|+.
T Consensus 378 ------~----~~~~~l~~~d~~~~~~~~l~~~~-------------~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~ 434 (706)
T 2z3z_A 378 ------S----PLERHFYCIDIKGGKTKDLTPES-------------GMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIG 434 (706)
T ss_dssp ------C----TTCBEEEEEETTCCCCEESCCSS-------------SEEEEEECTTSSEEEEEEECSSCSCEEEEEESS
T ss_pred ------C----CceEEEEEEEcCCCCceeccCCC-------------ceEEEEECCCCCEEEEEecCCCCCcEEEEEECC
Confidence 0 12346889999888766665321 123579999999999999999999999999998
Q ss_pred CCceeEeecCCCCCCCCCCCceEEEEEEccCC-eEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCC
Q 005240 461 LKKSSQITNFPHPYPTLASLQKEMIKYQRKDG-VPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNE 539 (706)
Q Consensus 461 ~~~~~~lt~~~~~~~~~~~~~~~~~~~~~~dg-~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~ 539 (706)
+++...++..+ ++........+.+.+++.+| ..++++++.|+++++++ ++|+||++|||+... .+...|.
T Consensus 435 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~P~~~~~~~--~~p~iv~~HGg~~~~-----~~~~~~~- 505 (706)
T 2z3z_A 435 KGSHTLLEAKN-PDTGYAMPEIRTGTIMAADGQTPLYYKLTMPLHFDPAK--KYPVIVYVYGGPHAQ-----LVTKTWR- 505 (706)
T ss_dssp SCEEEEEECC-------CCCCEEEEEEECTTSSSEEEEEEECCTTCCTTS--CEEEEEECCCCTTCC-----CCCSCC--
T ss_pred CCeEeeccccc-hhhhcCCCCcEEEEEEcCCCCEEEEEEEEeCCCCCCCC--CccEEEEecCCCCce-----eeccccc-
Confidence 88744455432 33344456789999999999 99999999999876544 589999999987431 1111111
Q ss_pred cCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCCCC---chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHH
Q 005240 540 FSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLP---NDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMT 616 (706)
Q Consensus 540 ~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~---~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a 616 (706)
.....+++.|+++||.|++++.+|..+.+..+. ...+....+.|+.+++++|.+++.+|++||+|+|+||||++|
T Consensus 506 --~~~~~~~~~la~~G~~v~~~d~rG~g~s~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a 583 (706)
T 2z3z_A 506 --SSVGGWDIYMAQKGYAVFTVDSRGSANRGAAFEQVIHRRLGQTEMADQMCGVDFLKSQSWVDADRIGVHGWSYGGFMT 583 (706)
T ss_dssp -----CCHHHHHHHTTCEEEEECCTTCSSSCHHHHHTTTTCTTHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHH
T ss_pred --cCchHHHHHHHhCCcEEEEEecCCCcccchhHHHHHhhccCCccHHHHHHHHHHHHhCCCCCchheEEEEEChHHHHH
Confidence 111125788899999999988876644433221 122344568999999999988888999999999999999999
Q ss_pred HHHHHhCCCceeEEEeccCCCCCCCC-----------Ccc----------------------------------chHHHH
Q 005240 617 AHLLAHAPHLFCCGIARSGSYNKTLT-----------PFG----------------------------------FQAERF 651 (706)
Q Consensus 617 ~~~~~~~p~~~~a~v~~~~~~d~~~~-----------~~~----------------------------------~~~~~~ 651 (706)
++++.++|++|+|+|+.+|+.++... |.. -+.+++
T Consensus 584 ~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~ 663 (706)
T 2z3z_A 584 TNLMLTHGDVFKVGVAGGPVIDWNRYAIMYGERYFDAPQENPEGYDAANLLKRAGDLKGRLMLIHGAIDPVVVWQHSLLF 663 (706)
T ss_dssp HHHHHHSTTTEEEEEEESCCCCGGGSBHHHHHHHHCCTTTCHHHHHHHCGGGGGGGCCSEEEEEEETTCSSSCTHHHHHH
T ss_pred HHHHHhCCCcEEEEEEcCCccchHHHHhhhhhhhcCCcccChhhhhhCCHhHhHHhCCCCEEEEeeCCCCCCCHHHHHHH
Confidence 99999999999999999998764310 100 022389
Q ss_pred HHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHh
Q 005240 652 FDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYC 695 (706)
Q Consensus 652 ~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~~~~l 695 (706)
+++|...++++++++||+++|.+... ...++++.+.+||+++|
T Consensus 664 ~~~l~~~~~~~~~~~~~~~gH~~~~~-~~~~~~~~i~~fl~~~l 706 (706)
T 2z3z_A 664 LDACVKARTYPDYYVYPSHEHNVMGP-DRVHLYETITRYFTDHL 706 (706)
T ss_dssp HHHHHHHTCCCEEEEETTCCSSCCTT-HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCCCeEEEEeCCCCCCCCcc-cHHHHHHHHHHHHHHhC
Confidence 99999989999999999999998755 67889999999999975
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-47 Score=440.35 Aligned_cols=568 Identities=13% Similarity=0.045 Sum_probs=379.3
Q ss_pred ceeEeecCCCCCCCCeeeeecCCCCC--cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCc
Q 005240 6 GIGIHRLLPDDSLGPEKEVHGYPDGA--KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (706)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~i~~~~~~~--~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~ 83 (706)
+|++.++.. |+.+++....... .+..++|||||++|||...... ........+||++|+++++.++++.....
T Consensus 38 ~i~~~d~~~----g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~-~~~~~~~~~i~~~d~~~~~~~~l~~~~~~ 112 (723)
T 1xfd_A 38 TVRLWNVET----NTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEP-IYQHSYTGYYVLSKIPHGDPQSLDPPEVS 112 (723)
T ss_dssp CEEEBCGGG----CCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCC-CSSSCCCSEEEEEESSSCCCEECCCTTCC
T ss_pred CEEEEECCC----CcEEEEeccccccccccceEEECCCCCEEEEEecCcc-ceeecceeeEEEEECCCCceEeccCCccc
Confidence 578888877 7777665322221 3788999999999999875211 01112347899999999998888654321
Q ss_pred cccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEc
Q 005240 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (706)
Q Consensus 84 ~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~ 163 (706)
...+..+.|||||++|+|.+. .+||+++
T Consensus 113 --~~~~~~~~~SPdG~~la~~~~--------------------------------------------------~~i~~~~ 140 (723)
T 1xfd_A 113 --NAKLQYAGWGPKGQQLIFIFE--------------------------------------------------NNIYYCA 140 (723)
T ss_dssp --SCCCSBCCBCSSTTCEEEEET--------------------------------------------------TEEEEES
T ss_pred --cccccccEECCCCCEEEEEEC--------------------------------------------------CeEEEEE
Confidence 112567899999999999852 4799999
Q ss_pred c-CCCceecCCC--ce------------------EeeeeeCCCCcEEEEEeeccCcc--ccc-----------------c
Q 005240 164 L-DGTAKDFGTP--AV------------------YTAVEPSPDQKYVLITSMHRPYS--YKV-----------------P 203 (706)
Q Consensus 164 l-~g~~~~lt~~--~~------------------~~~~~~SpDG~~i~~~~~~~~~~--~~~-----------------~ 203 (706)
+ +|+.++++.. .. +..++|||||++|+|.+...... +.. +
T Consensus 141 ~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (723)
T 1xfd_A 141 HVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPK 220 (723)
T ss_dssp SSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCB
T ss_pred CCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCC
Confidence 9 4577776654 11 15799999999999988653210 000 0
Q ss_pred cc--cccceEEEEecCCCee-EEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeee
Q 005240 204 CA--RFSQKVQVWTTDGKLV-RELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYT 280 (706)
Q Consensus 204 ~~--~~~~~i~~~~~~~~~~-~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~ 280 (706)
.. .....|++|++.+++. +.+......... ......++|||||+. |++...... ....|++
T Consensus 221 ~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~-------~~~~~~~~~SpDg~~-l~~~~~~~~--------~~~~i~~ 284 (723)
T 1xfd_A 221 AGSENPSISLHVIGLNGPTHDLEMMPPDDPRMR-------EYYITMVKWATSTKV-AVTWLNRAQ--------NVSILTL 284 (723)
T ss_dssp TTSCCCEEEEEEEESSSSCCCEECCCCCCGGGS-------SEEEEEEEESSSSEE-EEEEEETTS--------CEEEEEE
T ss_pred CCCCCCeeEEEEEECCCCceeEEeeCCccCCCc-------cceeEEEEEeCCCeE-EEEEEcCCC--------CeEEEEE
Confidence 00 0124899999997763 555432110000 011346899999986 654433211 2235899
Q ss_pred ecCCCCCCCCceEEeec--cccc----ccceecCCCceEEEEeecccc----ceEEEEEc-CCCCCCC---ceeeecCcc
Q 005240 281 QPAEPAEGEKPEILHKL--DLRF----RSVSWCDDSLALVNETWYKTS----QTRTWLVC-PGSKDVA---PRVLFDRVF 346 (706)
Q Consensus 281 ~d~~~~~~~~~~~l~~~--~~~~----~~~~wspDg~~l~~~~~~~~~----~~~l~~~d-~~~~~~~---~~~l~~~~~ 346 (706)
+|+ ++++.+.+... ...+ ..+.|||||+.|++.+...++ ..+||++| .++ ++ .+.++....
T Consensus 285 ~d~---~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~--~~~~~~~~l~~~~~ 359 (723)
T 1xfd_A 285 CDA---TTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPN--SSNDNIQSITSGDW 359 (723)
T ss_dssp EET---TTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCC--SSSCCCCBSCCSSS
T ss_pred EeC---CCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCC--CCccceeEeecCCe
Confidence 998 67777666432 2222 389999999999987333333 56899999 455 23 455543221
Q ss_pred cccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCC-ceeeeecccchhhhhhhhhh
Q 005240 347 ENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTG-SKERIWESNREKYFETAVAL 425 (706)
Q Consensus 347 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g-~~~~l~~~~~~~~~~~~~~~ 425 (706)
... ..+.|||||++|++..... .....+||.++..++ +.+.|...-. .
T Consensus 360 ~~~------~~~~~spdg~~l~~~~~~~----------------~~~~~~l~~~~~~~~~~~~~l~~~~~---------~ 408 (723)
T 1xfd_A 360 DVT------KILAYDEKGNKIYFLSTED----------------LPRRRQLYSANTVGNFNRQCLSCDLV---------E 408 (723)
T ss_dssp CEE------EEEEEETTTTEEEEEESSS----------------CTTCCEEEEECSSTTCCCBCSSTTSS---------S
T ss_pred EEE------eeeEEcCCCCEEEEEEcCC----------------CCcceEEEEEeCCCCCCcceeccccc---------C
Confidence 110 1157999999998876320 013446888887654 3334432100 0
Q ss_pred ccCCCceecccCCCEEEEEEecCCCCcEEEEEECCCCceeEeecCCCC----CCCCCCCceEEEEEEccCCeEEEEEEEe
Q 005240 426 VFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHP----YPTLASLQKEMIKYQRKDGVPLTATLYL 501 (706)
Q Consensus 426 ~~~~~~~~~s~Dg~~l~~~~~~~~~p~~v~~~~~~~~~~~~lt~~~~~----~~~~~~~~~~~~~~~~~dg~~i~~~l~~ 501 (706)
......++|||||++|++..++...|..++. +..+++...+...+.. +......+++.+++++.|| +++++++.
T Consensus 409 ~~~~~~~~~spdg~~l~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~l~~~~~~ 486 (723)
T 1xfd_A 409 NCTYFSASFSHSMDFFLLKCEGPGVPMVTVH-NTTDKKKMFDLETNEHVKKAINDRQMPKVEYRDIEIDDY-NLPMQILK 486 (723)
T ss_dssp SCCCCEEEECTTSSEEEEECCSSSSCCEEEE-ETTTCCEEEEEECCHHHHHHHHTSCCCBCCBCCEEETTE-EECCBEEB
T ss_pred CCCeEEEEECCCCCEEEEEccCCCCCeEEEE-ECCCCCEEEEeccChhhhhhhhhccCCCceEEEEEcCCc-eEEEEEEe
Confidence 0123467999999999999999998886654 7655554333332211 1123344678888998899 99999999
Q ss_pred cCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCCCC---chhh
Q 005240 502 PPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLP---NDRF 578 (706)
Q Consensus 502 P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~---~~~~ 578 (706)
|+++++++ ++|+||++||++... ..... +. .....+.|+++||+|+.++++|..++|..+. ...+
T Consensus 487 P~~~~~~~--~~p~vv~~HG~~~~~-----~~~~~---~~--~~~~~~~l~~~G~~vv~~d~rG~g~~g~~~~~~~~~~~ 554 (723)
T 1xfd_A 487 PATFTDTT--HYPLLLVVDGTPGSQ-----SVAEK---FE--VSWETVMVSSHGAVVVKCDGRGSGFQGTKLLHEVRRRL 554 (723)
T ss_dssp CSSCCSSS--CEEEEEECCCCTTCC-----CCCCC---CC--CSHHHHHHHTTCCEEECCCCTTCSSSHHHHHHTTTTCT
T ss_pred CCCCCCCC--ccCEEEEEcCCCCcc-----ccCcc---cc--ccHHHHHhhcCCEEEEEECCCCCccccHHHHHHHHhcc
Confidence 99876544 589999999987421 01111 11 1123456667999999999887655543221 1123
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhC----CCceeEEEeccCCCCCCC-------------
Q 005240 579 VEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHA----PHLFCCGIARSGSYNKTL------------- 641 (706)
Q Consensus 579 ~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~----p~~~~a~v~~~~~~d~~~------------- 641 (706)
....+.|+.++++++.+++.+|++||+|+|+||||+++++++.++ |++|+|+++.+|+.++..
T Consensus 555 ~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~~~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 634 (723)
T 1xfd_A 555 GLLEEKDQMEAVRTMLKEQYIDRTRVAVFGKDYGGYLSTYILPAKGENQGQTFTCGSALSPITDFKLYASAFSERYLGLH 634 (723)
T ss_dssp TTHHHHHHHHHHHHHHSSSSEEEEEEEEEEETHHHHHHHHCCCCSSSTTCCCCSEEEEESCCCCTTSSBHHHHHHHHCCC
T ss_pred CcccHHHHHHHHHHHHhCCCcChhhEEEEEECHHHHHHHHHHHhccccCCCeEEEEEEccCCcchHHhhhhccHhhcCCc
Confidence 335688999999999888889999999999999999999999999 999999999999765321
Q ss_pred ---------------------CCcc------------chHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHH
Q 005240 642 ---------------------TPFG------------FQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETD 688 (706)
Q Consensus 642 ---------------------~~~~------------~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~ 688 (706)
.|.. -+..+++++|+..++++++++||+++|.+.......++++.++
T Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~i~ 714 (723)
T 1xfd_A 635 GLDNRAYEMTKVAHRVSALEEQQFLIIHPTADEKIHFQHTAELITQLIRGKANYSLQIYPDESHYFTSSSLKQHLYRSII 714 (723)
T ss_dssp SSCCSSTTTTCTHHHHTSCCSCEEEEEEETTCSSSCHHHHHHHHHHHHHTTCCCEEEEETTCCSSCCCHHHHHHHHHHHH
T ss_pred cCChhHHHhcChhhHHhhcCCCCEEEEEeCCCCCcCHhHHHHHHHHHHHCCCCeEEEEECCCCcccccCcchHHHHHHHH
Confidence 0110 0223899999999999999999999999865566788999999
Q ss_pred HHHHHHhc
Q 005240 689 RWLQKYCL 696 (706)
Q Consensus 689 ~f~~~~l~ 696 (706)
+||+++|+
T Consensus 715 ~fl~~~l~ 722 (723)
T 1xfd_A 715 NFFVECFR 722 (723)
T ss_dssp HHHTTTTC
T ss_pred HHHHHHhc
Confidence 99998874
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-45 Score=421.50 Aligned_cols=537 Identities=15% Similarity=0.118 Sum_probs=382.1
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccc----cccccceEEe--cCCcE-EEEE
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL----NAVFGSFVWV--NNSTL-LIFT 104 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~----~~~~~~~~wS--pDg~~-l~~~ 104 (706)
.+..|+|||| +++|+..++. .++...||++ ..+++.++++....... ..+-..+.|+ |||++ |+|.
T Consensus 25 ~~~~~~~s~~--~~~~~~~~~~----~~~~~~l~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~ 97 (662)
T 3azo_A 25 RPACVGAVGD--EVWWVAPRPA----EAGRATLVRR-RADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFT 97 (662)
T ss_dssp CCEEEEEETT--EEEEEEEETT----TTTEEEEEEE-CTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEE
T ss_pred ccceeEEcCC--eEEEEecCcc----cCCcEEEEEE-CCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEE
Confidence 5788999954 7888876422 1456789988 56788899986553200 0001156787 99999 9987
Q ss_pred ecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccC----CCceecCC-----C-
Q 005240 105 IPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD----GTAKDFGT-----P- 174 (706)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~----g~~~~lt~-----~- 174 (706)
... ..+||+++++ ++.++|+. .
T Consensus 98 ~~~------------------------------------------------~~~l~~~~~~~~g~~~~~~l~~~~~~~~~ 129 (662)
T 3azo_A 98 HFG------------------------------------------------DQRLYAFEPDAPGGAVPRPLTPVSAVGGG 129 (662)
T ss_dssp BTT------------------------------------------------TCCEEEECTTSTTCCCCEECSCCCCSTTC
T ss_pred ECC------------------------------------------------CCeEEEEcCCCCCCCCCEeccCCccCCCC
Confidence 431 1579999997 77888887 3
Q ss_pred ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCC------CeeEEcc-cCCCCCCCCcccCccCCCCcce
Q 005240 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG------KLVRELC-DLPPAEDIPVCYNSVREGMRSI 247 (706)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------~~~~~l~-~~~~~~~~p~~~~~~~~g~~~~ 247 (706)
..+..++|||||++|+|.+...... . ......+|++|++++ ++.++|+ .... ....+
T Consensus 130 ~~~~~~~~spDg~~l~~~~~~~~~~--~-~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~ 193 (662)
T 3azo_A 130 LRWADPVLLPERGEVWCMAEEFTGE--G-PSDVRRFLAAVPLDGSAAADRSAVRELSDDAHR-------------FVTGP 193 (662)
T ss_dssp EEEEEEEEETTTTEEEEEEEEECSS--S-TTCEEEEEEEEETTSTTTTCGGGSEESSCSCSS-------------EECCC
T ss_pred ccccCcEECCCCCEEEEEEecccCC--C-CCCceeEEEEEECCCCccccCCceeEEEecCCC-------------cccCc
Confidence 4677899999999999988652100 0 000125899999998 7788877 4321 12356
Q ss_pred eeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCC-CC---CceEEeec-ccccccceecCCCceEEEEeecccc
Q 005240 248 SWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAE-GE---KPEILHKL-DLRFRSVSWCDDSLALVNETWYKTS 322 (706)
Q Consensus 248 ~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~---~~~~l~~~-~~~~~~~~wspDg~~l~~~~~~~~~ 322 (706)
+|||||+. |++........ .+....|+++|+ + ++ +.++|+.. ...+..+.|||||+ |++.++.. +
T Consensus 194 ~~SpDG~~-la~~~~~~~~~----~~~~~~i~~~d~---~~~g~~~~~~~l~~~~~~~~~~~~~spdg~-l~~~~~~~-~ 263 (662)
T 3azo_A 194 RLSPDGRQ-AVWLAWDHPRM----PWEGTELKTARV---TEDGRFADTRTLLGGPEEAIAQAEWAPDGS-LIVATDRT-G 263 (662)
T ss_dssp EECTTSSE-EEEEEECTTCC----TTTCEEEEEEEE---CTTSCEEEEEEEEEETTBCEEEEEECTTSC-EEEEECTT-S
T ss_pred eECCCCCE-EEEEECCCCCC----CCCCcEEEEEEE---CCCCcccccEEeCCCCCceEcceEECCCCe-EEEEECCC-C
Confidence 89999998 88775432211 112346999999 5 45 56667654 57788999999999 77766443 4
Q ss_pred ceEEEEEcCCCCCCCceeeecCccc--ccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeee
Q 005240 323 QTRTWLVCPGSKDVAPRVLFDRVFE--NVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLF 400 (706)
Q Consensus 323 ~~~l~~~d~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~ 400 (706)
..+||++|++++ +.+.++..... ...-.++...+.++++|+.++... + ....||.+
T Consensus 264 ~~~l~~~~~~~~--~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~-------------------~-~~~~l~~~ 321 (662)
T 3azo_A 264 WWNLHRVDPATG--AATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHG-------------------K-GAAVLGIL 321 (662)
T ss_dssp SCEEEEECTTTC--CEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEB-------------------S-SSCEEEEE
T ss_pred CeEEEEEECCCC--ceeecccccccccCccccccCceEeEeCCCEEEEEEE-------------------c-CccEEEEE
Confidence 568999999773 45555443211 111112223345556665433321 1 23468889
Q ss_pred ecCCCceeeeecccchhhhhhhhhhccCCCceec-ccCCCEEEEEEecCCCCcEEEEEECCCCceeEeecCCCCC-CCCC
Q 005240 401 DINTGSKERIWESNREKYFETAVALVFGQGEEDI-NLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPY-PTLA 478 (706)
Q Consensus 401 d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-s~Dg~~l~~~~~~~~~p~~v~~~~~~~~~~~~lt~~~~~~-~~~~ 478 (706)
|+++++.++|...... ...+ ++|++.++++.++...|.+||++|+.+++.++|+..+... ....
T Consensus 322 d~~~~~~~~l~~~~~~--------------~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~ 387 (662)
T 3azo_A 322 DPESGELVDAAGPWTE--------------WAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRARTIGARHTDPVDPAY 387 (662)
T ss_dssp ETTTTEEEECCSSCCE--------------EEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCEEEEESCCCCSSCGGG
T ss_pred ECCCCcEEEecCCCCe--------------EEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCceEEeecCCcccCCccc
Confidence 9988877666433211 1234 8899999999999999999999999999999998765432 3334
Q ss_pred CCceEEEEEEccCCeEEEEEEEecCCCC--CCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCe
Q 005240 479 SLQKEMIKYQRKDGVPLTATLYLPPGYD--QSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRF 556 (706)
Q Consensus 479 ~~~~~~~~~~~~dg~~i~~~l~~P~~~~--~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~ 556 (706)
...++.+.+++.+|..++++++.|++++ ....+++|+||++||++... ........++.|+++||
T Consensus 388 ~~~~~~~~~~~~dg~~i~~~~~~P~~~~~~~~~~~~~p~vv~~HG~~~~~-------------~~~~~~~~~~~l~~~G~ 454 (662)
T 3azo_A 388 YPEPQIRTFTAPDGREIHAHIYPPHSPDFTGPADELPPYVVMAHGGPTSR-------------VPAVLDLDVAYFTSRGI 454 (662)
T ss_dssp SCCCEEEEEECTTSCEEEEEEECCCCSSEECCTTCCCCEEEEECSSSSSC-------------CCCSCCHHHHHHHTTTC
T ss_pred cCcceEEEEEcCCCCEEEEEEECCCCccccCCCCCCccEEEEECCCCCcc-------------CcccchHHHHHHHhCCC
Confidence 4568999999989999999999999864 00123589999999986421 00112246788899999
Q ss_pred EEEEcCCCCcCCCCCCCCc---hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEec
Q 005240 557 AVLAGPSIPIIGEGDKLPN---DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIAR 633 (706)
Q Consensus 557 ~v~~~~~~~~~g~g~~~~~---~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~ 633 (706)
+|+.++++|+.|+|+++.. ..+....++|+.+++++|++++.+|++||+|+|+||||+++++++.+ |++|+|+++.
T Consensus 455 ~v~~~d~rG~~~~G~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~i~l~G~S~GG~~a~~~~~~-~~~~~~~v~~ 533 (662)
T 3azo_A 455 GVADVNYGGSTGYGRAYRERLRGRWGVVDVEDCAAVATALAEEGTADRARLAVRGGSAGGWTAASSLVS-TDVYACGTVL 533 (662)
T ss_dssp EEEEEECTTCSSSCHHHHHTTTTTTTTHHHHHHHHHHHHHHHTTSSCTTCEEEEEETHHHHHHHHHHHH-CCCCSEEEEE
T ss_pred EEEEECCCCCCCccHHHHHhhccccccccHHHHHHHHHHHHHcCCcChhhEEEEEECHHHHHHHHHHhC-cCceEEEEec
Confidence 9999999998888876532 23334568999999999999988999999999999999999999987 8999999999
Q ss_pred cCCCCCCC-------------------------------CCcc----------------------chHHHHHHHHHhCCC
Q 005240 634 SGSYNKTL-------------------------------TPFG----------------------FQAERFFDALKGHGA 660 (706)
Q Consensus 634 ~~~~d~~~-------------------------------~~~~----------------------~~~~~~~~~l~~~~~ 660 (706)
+|+.++.. .|.. .+.++++++|+..++
T Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~ 613 (662)
T 3azo_A 534 YPVLDLLGWADGGTHDFESRYLDFLIGSFEEFPERYRDRAPLTRADRVRVPFLLLQGLEDPVCPPEQCDRFLEAVAGCGV 613 (662)
T ss_dssp SCCCCHHHHHTTCSCGGGTTHHHHHTCCTTTCHHHHHHTCGGGGGGGCCSCEEEEEETTCSSSCTHHHHHHHHHHTTSCC
T ss_pred CCccCHHHHhcccccchhhHhHHHHhCCCccchhHHHhhChHhHhccCCCCEEEEeeCCCCCCCHHHHHHHHHHHHHcCC
Confidence 99865210 0000 023389999999999
Q ss_pred cEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHhccCC
Q 005240 661 LSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCLSNT 699 (706)
Q Consensus 661 ~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~~~~l~~~~ 699 (706)
++++++||+++|.+.......+.++.+++||+++|+..+
T Consensus 614 ~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~~~~ 652 (662)
T 3azo_A 614 PHAYLSFEGEGHGFRRKETMVRALEAELSLYAQVFGVEV 652 (662)
T ss_dssp CEEEEEETTCCSSCCSHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CEEEEEECCCCCCCCChHHHHHHHHHHHHHHHHHhCCCC
Confidence 999999999999987666778999999999999997543
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-46 Score=431.47 Aligned_cols=562 Identities=14% Similarity=0.072 Sum_probs=379.9
Q ss_pred cceeEeecCCCCCCCCeeeeecCCCC--CcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCce---eeccc
Q 005240 5 TGIGIHRLLPDDSLGPEKEVHGYPDG--AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA---KPLFE 79 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~i~~~~~~--~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~---~~lt~ 79 (706)
.+|++.+++. |+.+++...... ..+..++|||||++|||.....+.. .-+....||++|+++++. ++++
T Consensus 36 ~~i~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~-~~s~~~~i~~~d~~~g~~~~~~~l~- 109 (719)
T 1z68_A 36 NNIVLYNIET----GQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLW-RYSYTATYYIYDLSNGEFVRGNELP- 109 (719)
T ss_dssp SCEEEEESSS----CCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECS-SSCEEEEEEEEETTTTEECCSSCCC-
T ss_pred CCEEEEEcCC----CcEEEEEccccccccceeeEEECCCCCeEEEEecCceeE-EeecceEEEEEECCCCccccceecC-
Confidence 3688999977 888887632111 1278899999999999987521000 001247899999999988 6663
Q ss_pred CCCccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceE
Q 005240 80 SPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQL 159 (706)
Q Consensus 80 ~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l 159 (706)
. .+..+.|||||++|+|... ..|
T Consensus 110 --~-----~~~~~~~SPDG~~la~~~~--------------------------------------------------~~i 132 (719)
T 1z68_A 110 --R-----PIQYLCWSPVGSKLAYVYQ--------------------------------------------------NNI 132 (719)
T ss_dssp --S-----SBCCEEECSSTTCEEEEET--------------------------------------------------TEE
T ss_pred --c-----ccccceECCCCCEEEEEEC--------------------------------------------------CeE
Confidence 2 2678999999999999742 579
Q ss_pred EEEcc-CCCceecCCCc--e-E-----------------eeeeeCCCCcEEEEEeeccCcc--ccc--------------
Q 005240 160 VLGSL-DGTAKDFGTPA--V-Y-----------------TAVEPSPDQKYVLITSMHRPYS--YKV-------------- 202 (706)
Q Consensus 160 ~~~~l-~g~~~~lt~~~--~-~-----------------~~~~~SpDG~~i~~~~~~~~~~--~~~-------------- 202 (706)
+++++ +|+.++++..+ . + ..++|||||++|+|.+.+.... +..
T Consensus 133 ~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 212 (719)
T 1z68_A 133 YLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINI 212 (719)
T ss_dssp EEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEE
T ss_pred EEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceee
Confidence 99999 55777776431 1 1 4799999999999987653210 000
Q ss_pred --c---cccccceEEEEecCCCeeE---EcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCc
Q 005240 203 --P---CARFSQKVQVWTTDGKLVR---ELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSP 274 (706)
Q Consensus 203 --~---~~~~~~~i~~~~~~~~~~~---~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~ 274 (706)
+ ......+|++||+++++.. ++.... .+.........++||||++ +++.... ... .
T Consensus 213 ~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~SpD~~--~~~~~~~-~~~------~ 276 (719)
T 1z68_A 213 PYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPA-------MIASSDYYFSWLTWVTDER--VCLQWLK-RVQ------N 276 (719)
T ss_dssp ECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCH-------HHHTSCEEEEEEEESSSSE--EEEEEEE-SST------T
T ss_pred cCCCCCCCCCeeEEEEEECCCCCccceeEccCCc-------cCCCCcceEEEeEEeCCCe--EEEEEec-ccc------C
Confidence 0 0001248999999977642 332100 0000001134779999965 5444211 111 1
Q ss_pred cceeeeec----CCCCCCCCceEEee-----cccccc-----cceecCCCceEEEEeeccccceEEEEEcCCCCCCCcee
Q 005240 275 RDIIYTQP----AEPAEGEKPEILHK-----LDLRFR-----SVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRV 340 (706)
Q Consensus 275 ~~~l~~~d----~~~~~~~~~~~l~~-----~~~~~~-----~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~ 340 (706)
...|+++| + ++++.+.++. ....+. .+.|||||+.|++.....++..+||++|++++ +.+.
T Consensus 277 ~~~l~~~d~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~--~~~~ 351 (719)
T 1z68_A 277 VSVLSICDFREDW---QTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVE--NAIQ 351 (719)
T ss_dssp EEEEEEEEECSSS---SSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCST--TCEE
T ss_pred eEEEEEEcccCCC---CCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCC--ceEe
Confidence 23588998 6 5666655542 234444 78999999998886555557789999999884 4566
Q ss_pred eecCcccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCc--eeeeecccchhh
Q 005240 341 LFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGS--KERIWESNREKY 418 (706)
Q Consensus 341 l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~--~~~l~~~~~~~~ 418 (706)
|+..... ...+.++ ||+.|++..... .......+||.+++++|. .+.|...-
T Consensus 352 lt~~~~~-------v~~~~~~-d~~~i~~~~~~~--------------~~~~~~~~l~~~~~~~g~~~~~~l~~~~---- 405 (719)
T 1z68_A 352 ITSGKWE-------AINIFRV-TQDSLFYSSNEF--------------EEYPGRRNIYRISIGSYPPSKKCVTCHL---- 405 (719)
T ss_dssp CSCSSSC-------EEEEEEE-CSSEEEEEESCG--------------GGCTTCBEEEEEECSSSSCCEEESSTTT----
T ss_pred cccCceE-------EEEEEEE-eCCEEEEEEecC--------------CCCCceEEEEEEeCCCCCCCceeccCcc----
Confidence 6543211 1123445 888888876320 000233468888886663 34443210
Q ss_pred hhhhhhhccCCCceecccCCCEEEEEEecCCCCcEEEEEECCCCceeEeecCCCC----CCCCCCCceEEEEEEccCCeE
Q 005240 419 FETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHP----YPTLASLQKEMIKYQRKDGVP 494 (706)
Q Consensus 419 ~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~p~~v~~~~~~~~~~~~lt~~~~~----~~~~~~~~~~~~~~~~~dg~~ 494 (706)
.........++||+|++++++++++...| .++++|+++++..+++..|.. +.......++.+++++.| .+
T Consensus 406 ----~~~~~~~~~~~~s~dg~~l~~~~s~~~~p-~~~l~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 479 (719)
T 1z68_A 406 ----RKERCQYYTASFSDYAKYYALVCYGPGIP-ISTLHDGRTDQEIKILEENKELENALKNIQLPKEEIKKLEVDE-IT 479 (719)
T ss_dssp ----TTTTBCBEEEEECGGGSSEEEEECCBSSC-EEEEECSSSCCEEEEEECCHHHHHHTTSBCCCEEEEEEEEETT-EE
T ss_pred ----CCCCCceEEEEECCCCCEEEEEcCCCCCC-eEEEEECCCCCEEEEeecchhhhhhhccccCCceEEEEEecCC-eE
Confidence 00001223578999999999998888777 689999988987777776543 223344578999999877 99
Q ss_pred EEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHH-HCCeEEEEcCCCCcCCCCCCC
Q 005240 495 LTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFL-ARRFAVLAGPSIPIIGEGDKL 573 (706)
Q Consensus 495 i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~G~~v~~~~~~~~~g~g~~~ 573 (706)
++++++.|+++++++ ++|+||++||++... .... . +...+...|+ ++||+|+.++.+|..+++..+
T Consensus 480 l~~~~~~P~~~~~~~--~~p~vl~~hG~~~~~-----~~~~---~---~~~~~~~~l~~~~G~~v~~~d~rG~g~~~~~~ 546 (719)
T 1z68_A 480 LWYKMILPPQFDRSK--KYPLLIQVYGGPCSQ-----SVRS---V---FAVNWISYLASKEGMVIALVDGRGTAFQGDKL 546 (719)
T ss_dssp EEEEEEECTTCCSSS--CEEEEEEECCCTTBC-----CCCC---C---CCCCHHHHHHHTTCCEEEEEECTTBSSSCHHH
T ss_pred EEEEEEeCCCCCCCC--CccEEEEECCCCCcC-----cccc---c---chhhHHHHHHhcCCeEEEEEcCCCCCCCchhh
Confidence 999999999876543 589999999986421 0011 1 1123455554 699999998888765544332
Q ss_pred Cc---hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCCCCCC--------
Q 005240 574 PN---DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLT-------- 642 (706)
Q Consensus 574 ~~---~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d~~~~-------- 642 (706)
.. ..+....+.|+.++++++.+++.+|++||+|+|+||||++|++++.++|++|+|+|+.+|+.++...
T Consensus 547 ~~~~~~~~~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~ 626 (719)
T 1z68_A 547 LYAVYRKLGVYEVEDQITAVRKFIEMGFIDEKRIAIWGWSYGGYVSSLALASGTGLFKCGIAVAPVSSWEYYASVYTERF 626 (719)
T ss_dssp HGGGTTCTTHHHHHHHHHHHHHHHTTSCEEEEEEEEEEETHHHHHHHHHHTTSSSCCSEEEEESCCCCTTTSBHHHHHHH
T ss_pred HHHHhhccCcccHHHHHHHHHHHHhcCCCCCceEEEEEECHHHHHHHHHHHhCCCceEEEEEcCCccChHHhccccchhh
Confidence 11 1233467899999999999988899999999999999999999999999999999999998764310
Q ss_pred ----------------------------Ccc------------chHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHH
Q 005240 643 ----------------------------PFG------------FQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMH 682 (706)
Q Consensus 643 ----------------------------~~~------------~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~ 682 (706)
|.. -+..+++++|+..++++++++||+++|.+ ......+
T Consensus 627 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~gH~~-~~~~~~~ 705 (719)
T 1z68_A 627 MGLPTKDDNLEHYKNSTVMARAEYFRNVDYLLIHGTADDNVHFQNSAQIAKALVNAQVDFQAMWYSDQNHGL-SGLSTNH 705 (719)
T ss_dssp HCCSSTTTTHHHHHHTCSGGGGGGGTTSEEEEEEETTCSSSCTHHHHHHHHHHHHTTCCCEEEEETTCCTTC-CTHHHHH
T ss_pred cCCcccccchhhhhhCCHhHHHhcCCCCcEEEEEeCCCCCcCHHHHHHHHHHHHHCCCceEEEEECcCCCCC-CcccHHH
Confidence 100 02238999999999999999999999998 3445788
Q ss_pred HHHHHHHHHHHHhc
Q 005240 683 VIWETDRWLQKYCL 696 (706)
Q Consensus 683 ~~~~~~~f~~~~l~ 696 (706)
+++.+.+||+++|+
T Consensus 706 ~~~~i~~fl~~~l~ 719 (719)
T 1z68_A 706 LYTHMTHFLKQCFS 719 (719)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhC
Confidence 99999999999873
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-46 Score=422.65 Aligned_cols=503 Identities=15% Similarity=0.111 Sum_probs=361.7
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~ 111 (706)
.+..+++||||++|||++.+ ++..+||.+ ++++.+++|..... .+..+.|||| + ++|.+......
T Consensus 23 ~~~~~~~~~DG~~la~~s~~-------~g~~~lw~~--~~g~~~~lt~~~~~----~~~~~~~spd-~-~l~~~~~~~g~ 87 (582)
T 3o4h_A 23 EKYSLQGVVDGDKLLVVGFS-------EGSVNAYLY--DGGETVKLNREPIN----SVLDPHYGVG-R-VILVRDVSKGA 87 (582)
T ss_dssp CEEEEEEEETTTEEEEEEEE-------TTEEEEEEE--ETTEEEECCSSCCS----EECEECTTCS-E-EEEEEECSTTS
T ss_pred chheeecCCCCCeEEEEEcc-------CCceeEEEE--cCCCcEeeeccccc----ccccccCCCC-e-EEEEeccCCCC
Confidence 37788999999999998753 566788886 68999999876532 2678999999 5 55654321111
Q ss_pred CCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc--CCCceecCCCceEeeeeeCCCCcEE
Q 005240 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL--DGTAKDFGTPAVYTAVEPSPDQKYV 189 (706)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l--~g~~~~lt~~~~~~~~~~SpDG~~i 189 (706)
...+||.+++ +|...+++.......++|||||+.+
T Consensus 88 -------------------------------------------~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~s~dg~~~ 124 (582)
T 3o4h_A 88 -------------------------------------------EQHALFKVNTSRPGEEQRLEAVKPMRILSGVDTGEAV 124 (582)
T ss_dssp -------------------------------------------CCEEEEEEETTSTTCCEECTTSCSBEEEEEEECSSCE
T ss_pred -------------------------------------------cceEEEEEeccCCCccccccCCCCceeeeeCCCCCeE
Confidence 1258999999 7765577666444467999999999
Q ss_pred EEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCc
Q 005240 190 LITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDAN 269 (706)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~ 269 (706)
+|.+.... .+.+|++++++.++++.... ..++|||||+. |++.....+.
T Consensus 125 ~~~s~~~~------------~~~l~d~~~g~~~~l~~~~~---------------~~~~~spDG~~-la~~~~~~~~--- 173 (582)
T 3o4h_A 125 VFTGATED------------RVALYALDGGGLRELARLPG---------------FGFVSDIRGDL-IAGLGFFGGG--- 173 (582)
T ss_dssp EEEEECSS------------CEEEEEEETTEEEEEEEESS---------------CEEEEEEETTE-EEEEEEEETT---
T ss_pred EEEecCCC------------CceEEEccCCcEEEeecCCC---------------ceEEECCCCCE-EEEEEEcCCC---
Confidence 88876532 45588999988888876532 36799999998 7766533221
Q ss_pred cccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCc--cc
Q 005240 270 VEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRV--FE 347 (706)
Q Consensus 270 ~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~--~~ 347 (706)
...||++|+ ++++.++|+.....+..++|||||+.|+ .+ ..++..+||++|++++ +.+.+.... +.
T Consensus 174 -----~~~i~~~d~---~~g~~~~l~~~~~~~~~~~~SpDG~~l~-~~-~~~~~~~i~~~d~~~~--~~~~~~~~~~~~~ 241 (582)
T 3o4h_A 174 -----RVSLFTSNL---SSGGLRVFDSGEGSFSSASISPGMKVTA-GL-ETAREARLVTVDPRDG--SVEDLELPSKDFS 241 (582)
T ss_dssp -----EEEEEEEET---TTCCCEEECCSSCEEEEEEECTTSCEEE-EE-ECSSCEEEEEECTTTC--CEEECCCSCSHHH
T ss_pred -----CeEEEEEcC---CCCCceEeecCCCccccceECCCCCEEE-Ec-cCCCeeEEEEEcCCCC--cEEEccCCCcChh
Confidence 124999998 7889999988878889999999999998 33 3335568999999985 344332211 11
Q ss_pred ccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeeecccchhhhhhhhhhcc
Q 005240 348 NVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVF 427 (706)
Q Consensus 348 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~ 427 (706)
.+. ..+.....||||| .+++....+ + ...||.+ |+..+... +
T Consensus 242 ~~~-~~~~~~~~~spdg-~~~~~~~~~---g---------------~~~l~~~----g~~~~~~~--~------------ 283 (582)
T 3o4h_A 242 SYR-PTAITWLGYLPDG-RLAVVARRE---G---------------RSAVFID----GERVEAPQ--G------------ 283 (582)
T ss_dssp HHC-CSEEEEEEECTTS-CEEEEEEET---T---------------EEEEEET----TEEECCCS--S------------
T ss_pred hhh-hccccceeEcCCC-cEEEEEEcC---C---------------cEEEEEE----CCeeccCC--C------------
Confidence 100 0000112289999 666665331 1 1123333 44332111 1
Q ss_pred CCCceecccCCCEEEEEEecCCCCcEEEEEECCCCceeEeecCCCCCCCCCCCceEEEEEEccCCeEEEEEEEecCCCCC
Q 005240 428 GQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTLASLQKEMIKYQRKDGVPLTATLYLPPGYDQ 507 (706)
Q Consensus 428 ~~~~~~~s~Dg~~l~~~~~~~~~p~~v~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~~~~dg~~i~~~l~~P~~~~~ 507 (706)
....++|| |++ ++++.++...|+++|++++.+ +.++| .++ +.+.......+.+++++.+|.+++++++.|+++++
T Consensus 284 ~v~~~~~s-dg~-~l~~~s~~~~p~~l~~~d~~~-~~~~l-~~~-~~~~~~~~~~~~~~~~~~~g~~i~~~~~~p~~~~~ 358 (582)
T 3o4h_A 284 NHGRVVLW-RGK-LVTSHTSLSTPPRIVSLPSGE-PLLEG-GLP-EDLRRSIAGSRLVWVESFDGSRVPTYVLESGRAPT 358 (582)
T ss_dssp EEEEEEEE-TTE-EEEEEEETTEEEEEEEETTCC-EEECC-CCC-HHHHHTEEEEEEEEEECTTSCEEEEEEEEETTSCS
T ss_pred ceEEEEec-CCE-EEEEEcCCCCCCeEEEEcCCC-ceEEE-ecC-CccccccCcceEEEEECCCCCEEEEEEEcCCCCCC
Confidence 11246888 774 667888899999999999765 55555 111 00113446789999999999999999999997543
Q ss_pred CCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCCCCc---hhhHHHHHH
Q 005240 508 SKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPN---DRFVEQLVS 584 (706)
Q Consensus 508 ~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~---~~~~~~~~~ 584 (706)
++|+||++||++... . .......++.|+++||+|+.++++|+.|+|+++.. ..+....++
T Consensus 359 ----~~p~vv~~HG~~~~~--------~-----~~~~~~~~~~l~~~G~~v~~~d~rG~~~~G~s~~~~~~~~~~~~~~~ 421 (582)
T 3o4h_A 359 ----PGPTVVLVHGGPFAE--------D-----SDSWDTFAASLAAAGFHVVMPNYRGSTGYGEEWRLKIIGDPCGGELE 421 (582)
T ss_dssp ----SEEEEEEECSSSSCC--------C-----CSSCCHHHHHHHHTTCEEEEECCTTCSSSCHHHHHTTTTCTTTHHHH
T ss_pred ----CCcEEEEECCCcccc--------c-----ccccCHHHHHHHhCCCEEEEeccCCCCCCchhHHhhhhhhcccccHH
Confidence 489999999986431 0 11123567889999999999999988778766432 234456689
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCCCCC-----------------------
Q 005240 585 SAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTL----------------------- 641 (706)
Q Consensus 585 D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d~~~----------------------- 641 (706)
|+.++++++.+++.+| ||+|+||||||++|++++.++|++|+|+++.+|+.++..
T Consensus 422 d~~~~~~~l~~~~~~d--~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (582)
T 3o4h_A 422 DVSAAARWARESGLAS--ELYIMGYSYGGYMTLCALTMKPGLFKAGVAGASVVDWEEMYELSDAAFRNFIEQLTGGSREI 499 (582)
T ss_dssp HHHHHHHHHHHTTCEE--EEEEEEETHHHHHHHHHHHHSTTTSSCEEEESCCCCHHHHHHTCCHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHhCCCcc--eEEEEEECHHHHHHHHHHhcCCCceEEEEEcCCccCHHHHhhcccchhHHHHHHHcCcCHHH
Confidence 9999999999998887 999999999999999999999999999999999876321
Q ss_pred --------------CCcc------------chHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHh
Q 005240 642 --------------TPFG------------FQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYC 695 (706)
Q Consensus 642 --------------~~~~------------~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~~~~l 695 (706)
.|.. .+.++++++|+..++++++++||+++|.+.......++++.+++||+++|
T Consensus 500 ~~~~sp~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~i~~fl~~~l 579 (582)
T 3o4h_A 500 MRSRSPINHVDRIKEPLALIHPQNASRTPLKPLLRLMGELLARGKTFEAHIIPDAGHAINTMEDAVKILLPAVFFLATQR 579 (582)
T ss_dssp HHHTCGGGGGGGCCSCEEEEEETTCSSSCHHHHHHHHHHHHHTTCCEEEEEETTCCSSCCBHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHhcCCCCEEEEecCCCCCcCHHHHHHHHHHHHhCCCCEEEEEECCCCCCCCChHHHHHHHHHHHHHHHHHc
Confidence 0100 02349999999999999999999999999866678899999999999998
Q ss_pred cc
Q 005240 696 LS 697 (706)
Q Consensus 696 ~~ 697 (706)
+.
T Consensus 580 ~~ 581 (582)
T 3o4h_A 580 ER 581 (582)
T ss_dssp TC
T ss_pred CC
Confidence 63
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-44 Score=414.51 Aligned_cols=539 Identities=14% Similarity=0.067 Sum_probs=368.9
Q ss_pred eeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCc--cccccccceEEecCCcEEEEEecCCCCCCCC
Q 005240 37 SWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI--CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPK 114 (706)
Q Consensus 37 ~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~--~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~ 114 (706)
..+|||++++|.++.. ......||+++..+++.++|+..... .....+..+.|||||++|+|.....+..
T Consensus 74 ~p~~dG~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~--- 145 (695)
T 2bkl_A 74 TPSRRNGRFFYVRTHK-----DKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAAD--- 145 (695)
T ss_dssp CCEEETTEEEEEEECT-----TCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCS---
T ss_pred CCEEECCEEEEEEEcC-----CCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCc---
Confidence 4459999999998631 12357899999988888888753210 0011266889999999999986532221
Q ss_pred CCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccC-CCce---ecCCCceEeeeeeCCCCcEEE
Q 005240 115 KTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD-GTAK---DFGTPAVYTAVEPSPDQKYVL 190 (706)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~-g~~~---~lt~~~~~~~~~~SpDG~~i~ 190 (706)
..+|+++|++ |+.. .+.. .....++|||||+.|+
T Consensus 146 -----------------------------------------~~~i~v~dl~tg~~~~~~~~~~-~~~~~~~wspDg~~l~ 183 (695)
T 2bkl_A 146 -----------------------------------------EAVLHVIDVDSGEWSKVDVIEG-GKYATPKWTPDSKGFY 183 (695)
T ss_dssp -----------------------------------------CCEEEEEETTTCCBCSSCCBSC-CTTCCCEECTTSSEEE
T ss_pred -----------------------------------------eEEEEEEECCCCCCcCCcccCc-ccccceEEecCCCEEE
Confidence 2689999994 5544 2221 1126899999999999
Q ss_pred EEeeccCcccccccccccceEEEEecCCCee--EEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCC
Q 005240 191 ITSMHRPYSYKVPCARFSQKVQVWTTDGKLV--RELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDA 268 (706)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~ 268 (706)
|++.+..............+|++|++.++.. +.+....... .....+.|||||+. |++......
T Consensus 184 ~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~----------~~~~~~~~SpDG~~-l~~~~~~~~--- 249 (695)
T 2bkl_A 184 YEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDP----------TTFLQSDLSRDGKY-LFVYILRGW--- 249 (695)
T ss_dssp EEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCT----------TCEEEEEECTTSCC-EEEEEEETT---
T ss_pred EEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCC----------EEEEEEEECCCCCE-EEEEEeCCC---
Confidence 9987542100000111246799999987652 3343332110 11236789999998 776653321
Q ss_pred ccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCCCCC-CceeeecCccc
Q 005240 269 NVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDV-APRVLFDRVFE 347 (706)
Q Consensus 269 ~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~-~~~~l~~~~~~ 347 (706)
....||+++. .+++.+.|+........+.| +||. |++.++......+|+++|+++++. ..+.++...-.
T Consensus 250 -----~~~~l~~~~~---~~~~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~ 319 (695)
T 2bkl_A 250 -----SENDVYWKRP---GEKDFRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSS 319 (695)
T ss_dssp -----TEEEEEEECT---TCSSCEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSS
T ss_pred -----CceEEEEEcC---CCCceEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCC
Confidence 1235888877 56788888876666667777 7888 877765444567899999987531 12444322100
Q ss_pred ccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeeecccchhhhhhhhhhcc
Q 005240 348 NVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVF 427 (706)
Q Consensus 348 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~ 427 (706)
.. ...+.++ +..+++.... .....|+.++++++..+.+......
T Consensus 320 ~~-----l~~~~~~--~~~lv~~~~~------------------dg~~~l~~~~~~g~~~~~l~~~~~~----------- 363 (695)
T 2bkl_A 320 AS-----LLSVSIV--GGHLSLEYLK------------------DATSEVRVATLKGKPVRTVQLPGVG----------- 363 (695)
T ss_dssp CE-----EEEEEEE--TTEEEEEEEE------------------TTEEEEEEEETTCCEEEECCCSSSS-----------
T ss_pred Ce-----EEEEEEE--CCEEEEEEEE------------------CCEEEEEEEeCCCCeeEEecCCCCe-----------
Confidence 00 0113444 4455555432 1223577777754434444211110
Q ss_pred CCCceecccCCCEEEEEEecCCCCcEEEEEECCCCceeEeecCCCCCCCCCCCceEEEEEEccCCeEEEEEEEecCCCCC
Q 005240 428 GQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTLASLQKEMIKYQRKDGVPLTATLYLPPGYDQ 507 (706)
Q Consensus 428 ~~~~~~~s~Dg~~l~~~~~~~~~p~~v~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~~~~dg~~i~~~l~~P~~~~~ 507 (706)
....+++++|++.+++++++...|+.||++|+.+++.+.|+..+..+ ....+..+.+.+++.||..|+++++.|++++.
T Consensus 364 ~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~~l~~~~~~~-~~~~~~~~~~~~~~~dg~~i~~~~~~p~~~~~ 442 (695)
T 2bkl_A 364 AASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSELWAKVDVPM-NPEQYQVEQVFYASKDGTKVPMFVVHRKDLKR 442 (695)
T ss_dssp EECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEEEEEECCCSS-CGGGEEEEEEEEECTTSCEEEEEEEEETTCCC
T ss_pred EEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEEecCCCCC-CHHHCeEEEEEEECCCCCEEEEEEEECCCCCC
Confidence 01245788999999999999999999999999999988888755432 22346889999999999999999999998654
Q ss_pred CCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCCCCc---hhhHHHHHH
Q 005240 508 SKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPN---DRFVEQLVS 584 (706)
Q Consensus 508 ~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~---~~~~~~~~~ 584 (706)
. ++.|+||++|||+... . . ..+ ....+.|+++||+|+.++.+|+.++|..+.. ..+....+.
T Consensus 443 ~--~~~p~vl~~hGg~~~~------~--~-~~~----~~~~~~l~~~G~~v~~~d~rG~g~~g~~~~~~~~~~~~~~~~~ 507 (695)
T 2bkl_A 443 D--GNAPTLLYGYGGFNVN------M--E-ANF----RSSILPWLDAGGVYAVANLRGGGEYGKAWHDAGRLDKKQNVFD 507 (695)
T ss_dssp S--SCCCEEEECCCCTTCC------C--C-CCC----CGGGHHHHHTTCEEEEECCTTSSTTCHHHHHTTSGGGTHHHHH
T ss_pred C--CCccEEEEECCCCccc------c--C-CCc----CHHHHHHHhCCCEEEEEecCCCCCcCHHHHHhhHhhcCCCcHH
Confidence 3 3589999999986432 0 0 111 1234568899999999999988777765432 234456789
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCCCCCC----------------------
Q 005240 585 SAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLT---------------------- 642 (706)
Q Consensus 585 D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d~~~~---------------------- 642 (706)
|+.+++++|++++++|++||+|+|+||||+++++++.++|++|+|+|+.+|+.++...
T Consensus 508 D~~~~~~~l~~~~~~~~~~i~i~G~S~GG~la~~~~~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~g~~~~~~~~ 587 (695)
T 2bkl_A 508 DFHAAAEYLVQQKYTQPKRLAIYGGSNGGLLVGAAMTQRPELYGAVVCAVPLLDMVRYHLFGSGRTWIPEYGTAEKPEDF 587 (695)
T ss_dssp HHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCCCTTTGGGSTTGGGGHHHHCCTTSHHHH
T ss_pred HHHHHHHHHHHcCCCCcccEEEEEECHHHHHHHHHHHhCCcceEEEEEcCCccchhhccccCCCcchHHHhCCCCCHHHH
Confidence 9999999999999999999999999999999999999999999999999998774310
Q ss_pred -------------------Ccc------------chHHHHHHHHHh---CCCcEEEEEeCCCCccCCCc-ccHHHHHHHH
Q 005240 643 -------------------PFG------------FQAERFFDALKG---HGALSRLVLLPFEHHVYAAR-ENVMHVIWET 687 (706)
Q Consensus 643 -------------------~~~------------~~~~~~~~~l~~---~~~~~~~~~~~~~~H~~~~~-~~~~~~~~~~ 687 (706)
|.. .+..+|+++|+. .+.+++++++|+++|.+... ....+.+..+
T Consensus 588 ~~~~~~sp~~~~~~~~~~~P~Li~~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~ 667 (695)
T 2bkl_A 588 KTLHAYSPYHHVRPDVRYPALLMMAADHDDRVDPMHARKFVAAVQNSPGNPATALLRIEANAGHGGADQVAKAIESSVDL 667 (695)
T ss_dssp HHHHHHCGGGCCCSSCCCCEEEEEEETTCSSSCTHHHHHHHHHHHTSTTCCSCEEEEEETTCBTTBCSCHHHHHHHHHHH
T ss_pred HHHHhcChHhhhhhcCCCCCEEEEeeCCCCCCChHHHHHHHHHHHhhccCCCCEEEEEeCCCCcCCCCCHHHHHHHHHHH
Confidence 000 022389999998 68899999999999998653 3467788899
Q ss_pred HHHHHHHhccCCCC
Q 005240 688 DRWLQKYCLSNTSD 701 (706)
Q Consensus 688 ~~f~~~~l~~~~~~ 701 (706)
++||.++|.....+
T Consensus 668 ~~fl~~~l~~~~~~ 681 (695)
T 2bkl_A 668 YSFLFQVLDVQGAQ 681 (695)
T ss_dssp HHHHHHHTTC----
T ss_pred HHHHHHHcCCCCCC
Confidence 99999999765443
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-44 Score=410.57 Aligned_cols=541 Identities=13% Similarity=0.083 Sum_probs=368.0
Q ss_pred ccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCC--ccccccccceEEecCCcEEEEEecCCCC
Q 005240 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD--ICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (706)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~--~~~~~~~~~~~wSpDg~~l~~~~~~~~~ 110 (706)
...| +|||++++|..+.. ......||+++..+++.+.|+.... ......+..+.|||||++|+|.+...+.
T Consensus 76 ~~~p--~~dG~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~ 148 (710)
T 2xdw_A 76 YSCH--FKKGKRYFYFYNTG-----LQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGS 148 (710)
T ss_dssp ECCC--EEETTEEEEEEECS-----SCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTC
T ss_pred CCCC--EEECCEEEEEEEcC-----CceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCC
Confidence 4445 49999999998631 1234589999988887775543211 0001125688999999999998653222
Q ss_pred CCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCCceecCCC-ceEeeeeeCCCCcE
Q 005240 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKY 188 (706)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~~~lt~~-~~~~~~~~SpDG~~ 188 (706)
. ..+|+++|+ +|+..+++.. ..+..++|||||+.
T Consensus 149 ~--------------------------------------------~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~ 184 (710)
T 2xdw_A 149 D--------------------------------------------WVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKG 184 (710)
T ss_dssp S--------------------------------------------CEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSE
T ss_pred c--------------------------------------------eEEEEEEECCCCCCCcccccCcccceEEEEeCCCE
Confidence 1 158999999 5566554433 23567999999999
Q ss_pred EEEEeeccCcc---cccccccccceEEEEecCCCee--EEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEec
Q 005240 189 VLITSMHRPYS---YKVPCARFSQKVQVWTTDGKLV--RELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQ 263 (706)
Q Consensus 189 i~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~--~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~ 263 (706)
|+|++...... ..........+|+++++.++.. +.+...... + .....+.|||||+. |++....
T Consensus 185 l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~---~-------~~~~~~~~SpDg~~-l~~~~~~ 253 (710)
T 2xdw_A 185 MFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDE---P-------KWMGGAELSDDGRY-VLLSIRE 253 (710)
T ss_dssp EEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTC---T-------TCEEEEEECTTSCE-EEEEEEC
T ss_pred EEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCC---C-------eEEEEEEEcCCCCE-EEEEEEc
Confidence 99998764310 0000112246799999986642 233222111 0 11226789999998 7766532
Q ss_pred cCCCCccccCccceeeeecCCCCCC------C--CceEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCCCC
Q 005240 264 DRGDANVEVSPRDIIYTQPAEPAEG------E--KPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKD 335 (706)
Q Consensus 264 ~~~~~~~~~~~~~~l~~~d~~~~~~------~--~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~ 335 (706)
... ....||++|+ ++ + +.+.|+....... ..|+|||+.|++.++......+|+++|+++++
T Consensus 254 ~~~-------~~~~l~~~d~---~~~~~~~~~~~~~~~l~~~~~~~~-~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~ 322 (710)
T 2xdw_A 254 GCD-------PVNRLWYCDL---QQESNGITGILKWVKLIDNFEGEY-DYVTNEGTVFTFKTNRHSPNYRLINIDFTDPE 322 (710)
T ss_dssp SSS-------SCCEEEEEEG---GGSSSSSCSSCCCEEEECSSSSCE-EEEEEETTEEEEEECTTCTTCEEEEEETTSCC
T ss_pred cCC-------CccEEEEEEC---cccccccCCccceEEeeCCCCcEE-EEEeccCCEEEEEECCCCCCCEEEEEeCCCCC
Confidence 211 1236899998 44 3 4667765443333 35999999999987655557789999998853
Q ss_pred C-CceeeecCcccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCce-eeeecc
Q 005240 336 V-APRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSK-ERIWES 413 (706)
Q Consensus 336 ~-~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~-~~l~~~ 413 (706)
. ..+.++...-... ...+.|++ +.++++.... .....|+.+++.+|+. ++|...
T Consensus 323 ~~~~~~l~~~~~~~~-----~~~~~~~~-~~~lv~~~~~------------------~g~~~l~~~~~~~g~~~~~l~~~ 378 (710)
T 2xdw_A 323 ESKWKVLVPEHEKDV-----LEWVACVR-SNFLVLCYLH------------------DVKNTLQLHDLATGALLKIFPLE 378 (710)
T ss_dssp GGGCEEEECCCSSCE-----EEEEEEET-TTEEEEEEEE------------------TTEEEEEEEETTTCCEEEEECCC
T ss_pred cccceeccCCCCCCe-----EEEEEEEc-CCEEEEEEEE------------------CCEEEEEEEECCCCCEEEecCCC
Confidence 1 2244433211000 01245664 4455555432 1223577888866763 344222
Q ss_pred cchhhhhhhhhhccCCCceecccCCCEEEEEEecCCCCcEEEEEECCCCc--eeEeecCCCCCCCCCCCceEEEEEEccC
Q 005240 414 NREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKK--SSQITNFPHPYPTLASLQKEMIKYQRKD 491 (706)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~p~~v~~~~~~~~~--~~~lt~~~~~~~~~~~~~~~~~~~~~~d 491 (706)
.+ ....++++||++.+++++++..+|+.+|++|+.+++ .+.+...+........+..+.+.+++.|
T Consensus 379 ~~------------~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d 446 (710)
T 2xdw_A 379 VG------------SVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEELEPRVFREVTVKGIDASDYQTVQIFYPSKD 446 (710)
T ss_dssp SS------------EEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSCCCEEEEECCCTTCCGGGEEEEEEEEECTT
T ss_pred Cc------------eEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCccceEEeeecccCCcCccccEEEEEEEEcCC
Confidence 11 112357889999999999999999999999999988 6667654322112334688999999999
Q ss_pred CeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHH-CCeEEEEcCCCCcCCCC
Q 005240 492 GVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA-RRFAVLAGPSIPIIGEG 570 (706)
Q Consensus 492 g~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~G~~v~~~~~~~~~g~g 570 (706)
|..|+++++.|+++... ++.|+||++|||+... ..+ .+ ....+.|++ +||+|+.++.+|+.++|
T Consensus 447 g~~i~~~~~~p~~~~~~--~~~P~vl~~hGg~~~~--------~~~-~~----~~~~~~l~~~~G~~v~~~d~rG~g~~g 511 (710)
T 2xdw_A 447 GTKIPMFIVHKKGIKLD--GSHPAFLYGYGGFNIS--------ITP-NY----SVSRLIFVRHMGGVLAVANIRGGGEYG 511 (710)
T ss_dssp SCEEEEEEEEETTCCCS--SCSCEEEECCCCTTCC--------CCC-CC----CHHHHHHHHHHCCEEEEECCTTSSTTH
T ss_pred CCEEEEEEEecCCCCCC--CCccEEEEEcCCCCCc--------CCC-cc----cHHHHHHHHhCCcEEEEEccCCCCCCC
Confidence 99999999999986443 3589999999986421 111 11 123456777 99999999999887776
Q ss_pred CCCCc---hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCCCCCC-----
Q 005240 571 DKLPN---DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLT----- 642 (706)
Q Consensus 571 ~~~~~---~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d~~~~----- 642 (706)
..+.. ..+....+.|+.+++++|++++++|++||+|+|+|+||+++++++.++|++|+|+|+.+|+.++...
T Consensus 512 ~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~~~~~i~i~G~S~GG~la~~~a~~~p~~~~~~v~~~~~~d~~~~~~~~~ 591 (710)
T 2xdw_A 512 ETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYTI 591 (710)
T ss_dssp HHHHHTTSGGGTHHHHHHHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCCCTTTGGGSTT
T ss_pred hHHHHhhhhhcCCchHHHHHHHHHHHHHcCCCCcceEEEEEECHHHHHHHHHHHhCccceeEEEEcCCcccHhhccccCC
Confidence 55432 2334467899999999999999999999999999999999999999999999999999998763210
Q ss_pred ----------------------------------------Ccc------------chHHHHHHHHHhC-------CCcEE
Q 005240 643 ----------------------------------------PFG------------FQAERFFDALKGH-------GALSR 663 (706)
Q Consensus 643 ----------------------------------------~~~------------~~~~~~~~~l~~~-------~~~~~ 663 (706)
|.. .+..+|+++|+.. +++++
T Consensus 592 ~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~pP~Li~~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~ 671 (710)
T 2xdw_A 592 GHAWTTDYGCSDSKQHFEWLIKYSPLHNVKLPEADDIQYPSMLLLTADHDDRVVPLHSLKFIATLQYIVGRSRKQNNPLL 671 (710)
T ss_dssp GGGGHHHHCCTTSHHHHHHHHHHCGGGCCCCCSSTTCCCCEEEEEEETTCCSSCTHHHHHHHHHHHHHTTTSTTCCSCEE
T ss_pred ChhHHHhCCCCCCHHHHHHHHHhCcHhhhcccccccCCCCcEEEEEeCCCCccChhHHHHHHHHHHhhhccccCCCcCEE
Confidence 000 0223899999987 89999
Q ss_pred EEEeCCCCccCCCcc-cHHHHHHHHHHHHHHHhcc
Q 005240 664 LVLLPFEHHVYAARE-NVMHVIWETDRWLQKYCLS 697 (706)
Q Consensus 664 ~~~~~~~~H~~~~~~-~~~~~~~~~~~f~~~~l~~ 697 (706)
++++++++|++.... ...+.+..+++||.++|..
T Consensus 672 ~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 706 (710)
T 2xdw_A 672 IHVDTKAGHGAGKPTAKVIEEVSDMFAFIARCLNI 706 (710)
T ss_dssp EEEESSCCSSTTCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred EEEeCCCCcCCCCCHHHHHHHHHHHHHHHHHHcCC
Confidence 999999999987643 4578889999999999864
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-43 Score=403.33 Aligned_cols=537 Identities=12% Similarity=0.079 Sum_probs=356.1
Q ss_pred eeCCCCCeEEEEeeccccccccCCceeEEEEEcC---CCceeecccCCC--ccccccccceEEecCCcEEEEEecCCCCC
Q 005240 37 SWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAE---TGEAKPLFESPD--ICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (706)
Q Consensus 37 ~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~---~g~~~~lt~~~~--~~~~~~~~~~~wSpDg~~l~~~~~~~~~~ 111 (706)
..+|||++++|.++.. ......||+++.. +++.++|+.... ......+..+.|||||++|+|.+...+.
T Consensus 113 ~p~pdG~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~- 186 (741)
T 1yr2_A 113 LPQRRGASVFYSWNSG-----LMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGS- 186 (741)
T ss_dssp CCEEETTEEEEEEECS-----SCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTC-
T ss_pred CCEEECCEEEEEEEcC-----CCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCC-
Confidence 3459999999998631 1225789999987 777777643211 0001125689999999999998653222
Q ss_pred CCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCCceecCCC-ceEeeeeeCCCCcEE
Q 005240 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYV 189 (706)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~~~lt~~-~~~~~~~~SpDG~~i 189 (706)
...+|+++|+ +|+....... .....++|||| +.|
T Consensus 187 -------------------------------------------e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l 222 (741)
T 1yr2_A 187 -------------------------------------------DWRTVKFVGVADGKPLADELKWVKFSGLAWLGN-DAL 222 (741)
T ss_dssp -------------------------------------------SEEEEEEEETTTCCEEEEEEEEEESCCCEESTT-SEE
T ss_pred -------------------------------------------ceEEEEEEECCCCCCCCccCCCceeccEEEECC-CEE
Confidence 1258999999 4565544322 22358999999 999
Q ss_pred EEEeeccCcc-cccccccccceEEEEecCCCee--EEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCC
Q 005240 190 LITSMHRPYS-YKVPCARFSQKVQVWTTDGKLV--RELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRG 266 (706)
Q Consensus 190 ~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~--~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~ 266 (706)
+|++...+.. ..........+|+++++.++.. +.+...... + .....+.|||||+. |++......
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~---~-------~~~~~~~~SpDG~~-l~~~~~~~~- 290 (741)
T 1yr2_A 223 LYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPEL---P-------KRGHGASVSSDGRW-VVITSSEGT- 290 (741)
T ss_dssp EEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTC---T-------TCEEEEEECTTSCE-EEEEEECTT-
T ss_pred EEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCC---C-------eEEEEEEECCCCCE-EEEEEEccC-
Confidence 9998654310 0000111245799999986542 233332211 0 01236789999998 776653221
Q ss_pred CCccccCccceeeeecCCCCCCC--C-ceEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeec
Q 005240 267 DANVEVSPRDIIYTQPAEPAEGE--K-PEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFD 343 (706)
Q Consensus 267 ~~~~~~~~~~~l~~~d~~~~~~~--~-~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~ 343 (706)
+ ....||++|+ +++ + .+.|+........+ |+|||+.|++.++......+|+++|++++..+.+.++.
T Consensus 291 ~------~~~~l~~~d~---~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~ 360 (741)
T 1yr2_A 291 D------PVNTVHVARV---TNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVP 360 (741)
T ss_dssp C------SCCEEEEEEE---ETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEEC
T ss_pred C------CcceEEEEEC---CCCCCcccEEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEec
Confidence 0 1236999998 566 6 77777554444444 45999999998766555778999999874212344432
Q ss_pred CcccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeeecccchhhhhhhh
Q 005240 344 RVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAV 423 (706)
Q Consensus 344 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~ 423 (706)
..-..+ ..+.++ +..+++.... .....|+.++++++..+.+......
T Consensus 361 ~~~~~l------~~~~~~--~~~lv~~~~~------------------dg~~~l~~~~~~g~~~~~l~~~~~~------- 407 (741)
T 1yr2_A 361 ESKDNL------ESVGIA--GNRLFASYIH------------------DAKSQVLAFDLDGKPAGAVSLPGIG------- 407 (741)
T ss_dssp CCSSEE------EEEEEE--BTEEEEEEEE------------------TTEEEEEEEETTSCEEEECBCSSSC-------
T ss_pred CCCCeE------EEEEEE--CCEEEEEEEE------------------CCEEEEEEEeCCCCceeeccCCCCe-------
Confidence 211110 013333 5566665532 1223577788754444444321110
Q ss_pred hhccCCCceecccCCCEEEEEEecCCCCcEEEEEECCCCceeEeecCCCCCCCCCCCceEEEEEEccCCeEEEEEEEecC
Q 005240 424 ALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTLASLQKEMIKYQRKDGVPLTATLYLPP 503 (706)
Q Consensus 424 ~~~~~~~~~~~s~Dg~~l~~~~~~~~~p~~v~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~~~~dg~~i~~~l~~P~ 503 (706)
....+++++|++.|+|++++..+|++||++|+.+++.+.+...+..+ ....+..+.+.+++.||..|+++++.|+
T Consensus 408 ----~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~~l~~~~~~~-~~~~~~~~~~~~~~~dg~~i~~~~~~p~ 482 (741)
T 1yr2_A 408 ----SASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKTTPWEPVHLTF-DPADFRVEQVFYPSKDGTKVPMFIVRRK 482 (741)
T ss_dssp ----EEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEEEECSCCCCSS-CGGGEEEEEEEEECTTSCEEEEEEEEET
T ss_pred ----EEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEEecCCCCC-ChhHCEEEEEEEEcCCCCEEEEEEEecC
Confidence 01246789999999999999999999999999998877776532211 2345688999999999999999999998
Q ss_pred CCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCCCCc---hhhHH
Q 005240 504 GYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPN---DRFVE 580 (706)
Q Consensus 504 ~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~---~~~~~ 580 (706)
++ . ++.|+||++|||+... .........+.|+++||+|+.++.+|+.++|..+.. ..+..
T Consensus 483 ~~-~---~~~p~vl~~hGg~~~~-------------~~~~~~~~~~~l~~~G~~v~~~d~rG~g~~g~~~~~~~~~~~~~ 545 (741)
T 1yr2_A 483 DA-K---GPLPTLLYGYGGFNVA-------------LTPWFSAGFMTWIDSGGAFALANLRGGGEYGDAWHDAGRRDKKQ 545 (741)
T ss_dssp TC-C---SCCCEEEECCCCTTCC-------------CCCCCCHHHHHHHTTTCEEEEECCTTSSTTHHHHHHTTSGGGTH
T ss_pred CC-C---CCCcEEEEECCCCCcc-------------CCCCcCHHHHHHHHCCcEEEEEecCCCCCCCHHHHHhhhhhcCC
Confidence 75 2 3589999999986421 111112345678899999999999988777655432 22334
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCCCCCC---------------C--
Q 005240 581 QLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLT---------------P-- 643 (706)
Q Consensus 581 ~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d~~~~---------------~-- 643 (706)
..++|+.+++++|++++++|++||+|+|+|+||+++++++.++|++|+|+|+.+|+.++... |
T Consensus 546 ~~~~D~~~~~~~l~~~~~~~~~ri~i~G~S~GG~la~~~~~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~g~~~~ 625 (741)
T 1yr2_A 546 NVFDDFIAAGEWLIANGVTPRHGLAIEGGSNGGLLIGAVTNQRPDLFAAASPAVGVMDMLRFDQFTAGRYWVDDYGYPEK 625 (741)
T ss_dssp HHHHHHHHHHHHHHHTTSSCTTCEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCCCTTSGGGSTTGGGGHHHHCCTTS
T ss_pred CcHHHHHHHHHHHHHcCCCChHHEEEEEECHHHHHHHHHHHhCchhheEEEecCCccccccccCCCCCchhHHHcCCCCC
Confidence 56899999999999999999999999999999999999999999999999999998764210 0
Q ss_pred ------------------------cc------------chHHHHHHHHHh---CCCcEEEEEeCCCCccCCCc-ccHHHH
Q 005240 644 ------------------------FG------------FQAERFFDALKG---HGALSRLVLLPFEHHVYAAR-ENVMHV 683 (706)
Q Consensus 644 ------------------------~~------------~~~~~~~~~l~~---~~~~~~~~~~~~~~H~~~~~-~~~~~~ 683 (706)
.. .+..+++++|+. .+++++++++++++|.+... ....+.
T Consensus 626 ~~~~~~~~~~sp~~~~~~~~~~~P~Li~~G~~D~~v~~~~~~~~~~~l~~~~~~g~~~~l~~~~~~gH~~~~~~~~~~~~ 705 (741)
T 1yr2_A 626 EADWRVLRRYSPYHNVRSGVDYPAILVTTADTDDRVVPGHSFKYTAALQTAAIGPKPHLIRIETRAGHGSGKPIDKQIEE 705 (741)
T ss_dssp HHHHHHHHTTCGGGCCCTTSCCCEEEEEECSCCSSSCTHHHHHHHHHHHHSCCCSSCEEEEEC---------CHHHHHHH
T ss_pred HHHHHHHHHcCchhhhhccCCCCCEEEEeeCCCCCCChhHHHHHHHHHhhhhcCCCCEEEEEeCCCCcCCCCCHHHHHHH
Confidence 00 022389999999 89999999999999998754 235688
Q ss_pred HHHHHHHHHHHhccCCC
Q 005240 684 IWETDRWLQKYCLSNTS 700 (706)
Q Consensus 684 ~~~~~~f~~~~l~~~~~ 700 (706)
...+++||.++|.....
T Consensus 706 ~~~~~~fl~~~l~~~~~ 722 (741)
T 1yr2_A 706 TADVQAFLAHFTGLTPR 722 (741)
T ss_dssp HHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHcCCCcc
Confidence 89999999999975443
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-42 Score=396.49 Aligned_cols=536 Identities=12% Similarity=0.052 Sum_probs=363.8
Q ss_pred eeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCC--ccccccccceEEecCCcEEEEEecCCCCCCCC
Q 005240 37 SWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD--ICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPK 114 (706)
Q Consensus 37 ~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~--~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~ 114 (706)
..+++|.+++|..+.. .....-+|+.+.++++ +.|..... ......+..+.|||||++|+|.....+.+
T Consensus 83 ~p~~~g~~~y~~~~~~-----~~~~~~~~r~~~~~~~-~vllD~n~la~~~~~~l~~~~~SpDg~~lAy~~~~~G~~--- 153 (693)
T 3iuj_A 83 APFREGRYHYFFKNDG-----LQNQNVLWRQQEGKPA-EVFLDPNTLSPDGTTALDQLSFSRDGRILAYSLSLAGSD--- 153 (693)
T ss_dssp CCEEETTEEEEEEECS-----SCSSCEEEEECTTSCC-EEEECGGGGSTTSCCEEEEEEECTTSSEEEEEEECSSCC---
T ss_pred CCEEECCEEEEEEEcC-----CCceeEEEEeCCCCCc-EEEEehhhccCCCcEEEEEEEECCCCCEEEEEEecCCCc---
Confidence 3468999999987521 1223456766554444 32322110 00111256789999999999987543321
Q ss_pred CCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCCceecCCCce-EeeeeeCCCCcEEEEE
Q 005240 115 KTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTPAV-YTAVEPSPDQKYVLIT 192 (706)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~~~lt~~~~-~~~~~~SpDG~~i~~~ 192 (706)
...|+++|+ +|+....+.... ...++|| ||+.|+|+
T Consensus 154 -----------------------------------------~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~ 191 (693)
T 3iuj_A 154 -----------------------------------------WREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYS 191 (693)
T ss_dssp -----------------------------------------EEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEE
T ss_pred -----------------------------------------eEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEE
Confidence 268999999 566555433322 4688999 99999999
Q ss_pred eeccCcccccccccccceEEEEecCCCe--eEEcccCCC-CCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCc
Q 005240 193 SMHRPYSYKVPCARFSQKVQVWTTDGKL--VRELCDLPP-AEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDAN 269 (706)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~l~~~~~-~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~ 269 (706)
+...+............+|+++++.+.. .+.+..... . + .....+.|||||+. |++.......
T Consensus 192 ~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~---~-------~~~~~~~~SpDg~~-l~~~~~~~~~--- 257 (693)
T 3iuj_A 192 SYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQ---H-------HRYVGATVTEDDRF-LLISAANSTS--- 257 (693)
T ss_dssp ESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGG---C-------CSEEEEEECTTSCE-EEEEEESSSS---
T ss_pred EecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCC---C-------eEEEEEEEcCCCCE-EEEEEccCCC---
Confidence 8764210000011124689999998543 244443322 1 1 01125689999998 7665432221
Q ss_pred cccCccceeeeecCCCCCCC--CceEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCCCCC-CceeeecCcc
Q 005240 270 VEVSPRDIIYTQPAEPAEGE--KPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDV-APRVLFDRVF 346 (706)
Q Consensus 270 ~~~~~~~~l~~~d~~~~~~~--~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~-~~~~l~~~~~ 346 (706)
...||++|+ +++ +.+.|+........+ |+++|..|++.++......+|+.+|+++++. ..+.++...-
T Consensus 258 -----~~~i~~~d~---~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~ 328 (693)
T 3iuj_A 258 -----GNRLYVKDL---SQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQ 328 (693)
T ss_dssp -----CCEEEEEET---TSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCS
T ss_pred -----CcEEEEEEC---CCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCC
Confidence 135899998 444 567777554444444 8899999998876655567899999998531 1244432211
Q ss_pred cccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeeecccchhhhhhhhhhc
Q 005240 347 ENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALV 426 (706)
Q Consensus 347 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~ 426 (706)
.. +.|+++|++|++....+ ....|+.++++++..+.+......
T Consensus 329 -------~~--~~~s~~g~~lv~~~~~~------------------g~~~l~~~d~~g~~~~~l~~p~~~---------- 371 (693)
T 3iuj_A 329 -------QV--LTVHSGSGYLFAEYMVD------------------ATARVEQFDYEGKRVREVALPGLG---------- 371 (693)
T ss_dssp -------SC--EEEEEETTEEEEEEEET------------------TEEEEEEECTTSCEEEEECCSSSS----------
T ss_pred -------CE--EEEEEECCEEEEEEEEC------------------CeeEEEEEECCCCeeEEeecCCCc----------
Confidence 11 26899999998876431 223577788876655555322110
Q ss_pred cCCCceecccCCCEEEEEEecCCCCcEEEEEECCCCceeEeecCCCCCCCCCCCceEEEEEEccCCeEEEEEEEecCCCC
Q 005240 427 FGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTLASLQKEMIKYQRKDGVPLTATLYLPPGYD 506 (706)
Q Consensus 427 ~~~~~~~~s~Dg~~l~~~~~~~~~p~~v~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~~~~dg~~i~~~l~~P~~~~ 506 (706)
....+++++|++.+++++++..+|+.+|++|+.+++.+.|+..+..+. ...+..+.+.+++.||..|+++++.|+++.
T Consensus 372 -~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~~l~~~~~~~~-~~~~~~~~~~~~~~dg~~i~~~l~~p~~~~ 449 (693)
T 3iuj_A 372 -SVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAISLYRASAAPFK-PEDYVSEQRFYQSKDGTRVPLIISYRKGLK 449 (693)
T ss_dssp -EEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEEEEECCCSSCC-GGGEEEEEEEEECTTSCEEEEEEEEESSCC
T ss_pred -eEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEEEEEeCCCCcC-hhhCeeEEEEEecCCCcEEEEEEEecCCCC
Confidence 011356788999999999999999999999999999888887654432 234688999999999999999999999865
Q ss_pred CCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCCCCc---hhhHHHHH
Q 005240 507 QSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPN---DRFVEQLV 583 (706)
Q Consensus 507 ~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~---~~~~~~~~ 583 (706)
.. ++.|+||++|||+... .........+.|+++||+|+.++.||+.++|..+.. .......+
T Consensus 450 ~~--~~~P~ll~~hGg~~~~-------------~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~ 514 (693)
T 3iuj_A 450 LD--GSNPTILYGYGGFDVS-------------LTPSFSVSVANWLDLGGVYAVANLRGGGEYGQAWHLAGTQQNKQNVF 514 (693)
T ss_dssp CS--SCCCEEEECCCCTTCC-------------CCCCCCHHHHHHHHTTCEEEEECCTTSSTTCHHHHHTTSGGGTHHHH
T ss_pred CC--CCccEEEEECCCCCcC-------------CCCccCHHHHHHHHCCCEEEEEeCCCCCccCHHHHHhhhhhcCCCcH
Confidence 43 3589999999986321 111112345788999999999999988877765432 23444678
Q ss_pred HHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCCCCCC---------------------
Q 005240 584 SSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLT--------------------- 642 (706)
Q Consensus 584 ~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d~~~~--------------------- 642 (706)
+|+.++++||++++++|++||+|+|+|+||+|+++++.++|++|+|+|+.+|+.|+...
T Consensus 515 ~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~la~~~~~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~g~p~~~~~ 594 (693)
T 3iuj_A 515 DDFIAAAEYLKAEGYTRTDRLAIRGGSNGGLLVGAVMTQRPDLMRVALPAVGVLDMLRYHTFTAGTGWAYDYGTSADSEA 594 (693)
T ss_dssp HHHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCTTSCSEEEEESCCCCTTTGGGSGGGGGCHHHHCCTTSCHH
T ss_pred HHHHHHHHHHHHcCCCCcceEEEEEECHHHHHHHHHHhhCccceeEEEecCCcchhhhhccCCCchhHHHHcCCccCHHH
Confidence 99999999999999999999999999999999999999999999999999999874310
Q ss_pred --------------------C-cc------------chHHHHHHHHHhC---CCcEEEEEeCCCCccCCCc-ccHHHHHH
Q 005240 643 --------------------P-FG------------FQAERFFDALKGH---GALSRLVLLPFEHHVYAAR-ENVMHVIW 685 (706)
Q Consensus 643 --------------------~-~~------------~~~~~~~~~l~~~---~~~~~~~~~~~~~H~~~~~-~~~~~~~~ 685 (706)
| .. .+..+|+++|+.. +++++++++|+++|++... ....+.+.
T Consensus 595 ~~~~~~~~sp~~~~~~~~~~Pp~Li~~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~ 674 (693)
T 3iuj_A 595 MFDYLKGYSPLHNVRPGVSYPSTMVTTADHDDRVVPAHSFKFAATLQADNAGPHPQLIRIETNAGHGAGTPVAKLIEQSA 674 (693)
T ss_dssp HHHHHHHHCHHHHCCTTCCCCEEEEEEESSCSSSCTHHHHHHHHHHHHHCCSSSCEEEEEEC-------CHHHHHHHHHH
T ss_pred HHHHHHhcCHHHhhcccCCCCceeEEecCCCCCCChhHHHHHHHHHHhhCCCCCCEEEEEeCCCCCCCcccHHHHHHHHH
Confidence 0 00 0223899999987 5899999999999998764 45678889
Q ss_pred HHHHHHHHHhccCCC
Q 005240 686 ETDRWLQKYCLSNTS 700 (706)
Q Consensus 686 ~~~~f~~~~l~~~~~ 700 (706)
.+++||.++|+....
T Consensus 675 ~~~~fl~~~l~~~~~ 689 (693)
T 3iuj_A 675 DIYAFTLYEMGYREL 689 (693)
T ss_dssp HHHHHHHHHTTCSSC
T ss_pred HHHHHHHHHcCCCCC
Confidence 999999999976543
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-41 Score=384.35 Aligned_cols=528 Identities=12% Similarity=0.040 Sum_probs=352.1
Q ss_pred ccceeeCCCCCeEEEEeeccccccccCCceeEEEEEc---CCC--ceeecccCCCc--ccc-ccccceEEe-cCCcEEEE
Q 005240 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADA---ETG--EAKPLFESPDI--CLN-AVFGSFVWV-NNSTLLIF 103 (706)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~---~~g--~~~~lt~~~~~--~~~-~~~~~~~wS-pDg~~l~~ 103 (706)
.+.|. |+|.+++|+++.. +....-+++.+. .++ +.+.+...... +.. ..+..+.|| |||++|+|
T Consensus 119 ~~~p~--~~g~~~yy~~~~~-----g~~~~vl~r~~~~~~~~~~~~~~vlld~n~~a~~~~~~~~~~~~~S~PDG~~lAy 191 (751)
T 2xe4_A 119 MSAPY--VYGKYRYYTREVK-----GKPYKIYCRVFTDKEPGDVAAEEVIIDVNQVAEGKAFCDVMEVKPAPPEHDLVAF 191 (751)
T ss_dssp ECCCE--EETTEEEEEEECT-----TCCSCEEEEEETTSCTTCTTTCEEEEEHHHHTTTCSCCEEEEEEECTTTTCEEEE
T ss_pred CCCCe--EECCEEEEEEECC-----CCceeEEEEEcCCCCCCCCcCCEEEechhHhccCCCeEEEeeeEecCCCCCEEEE
Confidence 44453 7999999997631 122346788876 454 43444321100 000 024578999 99999999
Q ss_pred EecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCCC-ceecCCC--ceEeee
Q 005240 104 TIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGT-AKDFGTP--AVYTAV 180 (706)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g~-~~~lt~~--~~~~~~ 180 (706)
.....+.. ..+||++++++. . .+... .....+
T Consensus 192 ~~~~~G~~--------------------------------------------~~~l~v~dl~~g~~-~l~~~~~~~~~~~ 226 (751)
T 2xe4_A 192 SVDMSGNE--------------------------------------------VYTIEFKRISDPSQ-TIADKVSGTNGEI 226 (751)
T ss_dssp EEESSSSS--------------------------------------------CEEEEEEETTCTTC-CCCCCEEEECSCC
T ss_pred EEeCCCCc--------------------------------------------eEEEEEEECCCCCE-eCCccccCceeeE
Confidence 87532221 157999999442 2 22222 234579
Q ss_pred eeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCee--EEcccCCCCCCCCcccCccCCCCcceeeecCCCceEE
Q 005240 181 EPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV--RELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLY 258 (706)
Q Consensus 181 ~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~ 258 (706)
+|||||+.|+|++..... ...+|+++++.++.. +.+....... ....+.|||||+. |+
T Consensus 227 ~WspDg~~l~y~~~d~~~--------~~~~v~~~~lgt~~~~~~lv~~~~~~~-----------~~~~~~~SpDg~~-l~ 286 (751)
T 2xe4_A 227 VWGPDHTSLFYVTKDETL--------RENKVWRHVMGKLQSEDVCLYEEHNPL-----------FSAFMYKAADTNT-LC 286 (751)
T ss_dssp EECSSTTEEEEEEECTTC--------CEEEEEEEETTSCGGGCEEEEECCCTT-----------CEEEEEECTTSSE-EE
T ss_pred EEecCCCEEEEEEECCCC--------CCCEEEEEECCCCchhcEEEEecCCCc-----------eEEEEEECCCCCE-EE
Confidence 999999999999765321 135899999987542 2333221110 0125689999998 77
Q ss_pred EEEeccCCCCccccCccceeeeecCCCCCCC--Cc--eEEeecccccccceecCC---CceEEEEeecc-ccceEEEEEc
Q 005240 259 WVEAQDRGDANVEVSPRDIIYTQPAEPAEGE--KP--EILHKLDLRFRSVSWCDD---SLALVNETWYK-TSQTRTWLVC 330 (706)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~--~~--~~l~~~~~~~~~~~wspD---g~~l~~~~~~~-~~~~~l~~~d 330 (706)
+..... ....||++|+ +++ +. +.|+... ..+.|+++ |..|++.++.. ....+||.++
T Consensus 287 ~~~~~~---------~~~~l~~~d~---~~~~~~~~~~~l~~~~---~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d 351 (751)
T 2xe4_A 287 IGSQSP---------ETAEVHLLDL---RKGNAHNTLEIVRPRE---KGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAP 351 (751)
T ss_dssp EEEECS---------SCEEEEEEES---SSCTTCCCEEESSCCC---TTCCEEEEEETTTEEEEEECTTTCTTCEEEEEE
T ss_pred EEecCC---------CCceEEEEEC---CCCCCCceeEEeecCC---CCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEc
Confidence 765321 1236999998 443 34 5554322 34556666 88888887664 4677899999
Q ss_pred CCCCCCCcee-eecCcccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeec-------
Q 005240 331 PGSKDVAPRV-LFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDI------- 402 (706)
Q Consensus 331 ~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~------- 402 (706)
++++ .+.+. ++..... .....++.++++|++....+ ....|+.+++
T Consensus 352 ~~~~-~~~~~~li~~~~~-------~~l~~~~~~~~~lv~~~~~~------------------g~~~l~~~dl~~~~~~~ 405 (751)
T 2xe4_A 352 RGQP-SDWSHVLVDHSED-------VFMESIAVRSNYLVVAGRRA------------------GLTRIWTMMADSQDGVF 405 (751)
T ss_dssp TTST-TCCCCEEECCCSS-------EEEEEEEECSSEEEEEEEET------------------TEEEEEEEECCTTTSCC
T ss_pred CCCc-ccceeeEECCCCC-------cEEEEEEEECCEEEEEEEeC------------------CEEEEEEEecccccccc
Confidence 8863 12233 3221110 01122455677887776431 2235667775
Q ss_pred CCCc-eeeeecccchhhhhhhhhhccCCCceec----ccCCCEEEEEEecCCCCcEEEEEECCCCceeEeecCCCC-CCC
Q 005240 403 NTGS-KERIWESNREKYFETAVALVFGQGEEDI----NLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHP-YPT 476 (706)
Q Consensus 403 ~~g~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~----s~Dg~~l~~~~~~~~~p~~v~~~~~~~~~~~~lt~~~~~-~~~ 476 (706)
++|+ .++|...... .. ..+.+ ++|++.+++++++..+|+++|++|+.+++.+.|+..+.. ...
T Consensus 406 ~~g~~~~~l~l~~~~----~~-------~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~~~l~~~~~~~~~~ 474 (751)
T 2xe4_A 406 KAGTGLREVVMEEPI----FT-------VHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSRTAVKVREVGGGFD 474 (751)
T ss_dssp CTTTCCEECCCCCSS----CE-------EEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCEEEEEECCCCTTCC
T ss_pred cCCccceEECCCCce----eE-------EEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcEEEEeccccccCCC
Confidence 4555 5555321110 00 01222 568889999999999999999999999998888876532 112
Q ss_pred CCCCceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCe
Q 005240 477 LASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRF 556 (706)
Q Consensus 477 ~~~~~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~ 556 (706)
...+.++.+.+++.||..|+++++.|+++++. +++|+||++|||+... .. ..+ ....+.|+++||
T Consensus 475 ~~~~~~~~~~~~s~dG~~i~~~l~~p~~~~~~--~~~P~vl~~HGg~~~~------~~---~~~----~~~~~~l~~~G~ 539 (751)
T 2xe4_A 475 AANYKVERRFATAPDQTKIPLSVVYHKDLDMS--QPQPCMLYGYGSYGLS------MD---PQF----SIQHLPYCDRGM 539 (751)
T ss_dssp GGGEEEEEEEEECTTCCEEEEEEEEETTSCTT--SCCCEEEECCCCTTCC------CC---CCC----CGGGHHHHTTTC
T ss_pred ccceEEEEEEEECCCCcEEEEEEEcCCCCCCC--CCccEEEEECCCCCcC------CC---Ccc----hHHHHHHHhCCc
Confidence 23457899999999999999999999986443 3589999999986421 10 111 123567889999
Q ss_pred EEEEcCCCCcCCCCCCCCc----hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEe
Q 005240 557 AVLAGPSIPIIGEGDKLPN----DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIA 632 (706)
Q Consensus 557 ~v~~~~~~~~~g~g~~~~~----~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~ 632 (706)
+|+.++.+|+.++|+.+.. ..+....++|+.++++||++++++|++||+|+|+|+||+++++++.++|++|+|+|+
T Consensus 540 ~v~~~d~RG~g~~G~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~la~~~a~~~p~~~~a~v~ 619 (751)
T 2xe4_A 540 IFAIAHIRGGSELGRAWYEIGAKYLTKRNTFSDFIAAAEFLVNAKLTTPSQLACEGRSAGGLLMGAVLNMRPDLFKVALA 619 (751)
T ss_dssp EEEEECCTTSCTTCTHHHHTTSSGGGTHHHHHHHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCGGGCSEEEE
T ss_pred EEEEEeeCCCCCcCcchhhccccccccCccHHHHHHHHHHHHHCCCCCcccEEEEEECHHHHHHHHHHHhCchheeEEEE
Confidence 9999999998888766432 233456789999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCC------------------C------------------------C-cc------------chHHHHHHHHHh
Q 005240 633 RSGSYNKTL------------------T------------------------P-FG------------FQAERFFDALKG 657 (706)
Q Consensus 633 ~~~~~d~~~------------------~------------------------~-~~------------~~~~~~~~~l~~ 657 (706)
.+|+.|+.. . | .. .+..+|+++|+.
T Consensus 620 ~~~~~d~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~sp~~~~~~~~~Pp~Lii~G~~D~~vp~~~~~~~~~~L~~ 699 (751)
T 2xe4_A 620 GVPFVDVMTTMCDPSIPLTTGEWEEWGNPNEYKYYDYMLSYSPMDNVRAQEYPNIMVQCGLHDPRVAYWEPAKWVSKLRE 699 (751)
T ss_dssp ESCCCCHHHHHTCTTSTTHHHHTTTTCCTTSHHHHHHHHHHCTGGGCCSSCCCEEEEEEETTCSSSCTHHHHHHHHHHHH
T ss_pred eCCcchHHhhhcccCcccchhhHHHcCCCCCHHHHHHHHhcChhhhhccCCCCceeEEeeCCCCCCCHHHHHHHHHHHHh
Confidence 999876210 0 0 00 023389999998
Q ss_pred CC---CcEEEEEeCCCCccCCCcc-cHHHHHHHHHHHHHHHhccCC
Q 005240 658 HG---ALSRLVLLPFEHHVYAARE-NVMHVIWETDRWLQKYCLSNT 699 (706)
Q Consensus 658 ~~---~~~~~~~~~~~~H~~~~~~-~~~~~~~~~~~f~~~~l~~~~ 699 (706)
.+ .++.+.+||+++|.+.... ...+....+++||.++|+...
T Consensus 700 ~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~Fl~~~l~~~~ 745 (751)
T 2xe4_A 700 CKTDNNEILLNIDMESGHFSAKDRYKFWKESAIQQAFVCKHLKSTV 745 (751)
T ss_dssp HCCSCCCEEEEEETTCCSSCCSSHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred cCCCCceEEEEECCCCCCCCcCChhHHHHHHHHHHHHHHHHhCCCc
Confidence 84 4567777899999987543 455677789999999997543
|
| >4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-31 Score=301.36 Aligned_cols=250 Identities=12% Similarity=0.061 Sum_probs=201.3
Q ss_pred ecccCCCEEEEEEecCCCCcEEEEEECCCCceeEeecCCCCCCCCCCCceEEEEEEccCCeEEEEEEEecCCCCCCCCCC
Q 005240 433 DINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTLASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGP 512 (706)
Q Consensus 433 ~~s~Dg~~l~~~~~~~~~p~~v~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~ 512 (706)
++++|+..+++++++..+|+.+|++|+. ++.+.|+..+..+.. ..+.+|.+.+++.||.+|+++++.|+++++.+ +
T Consensus 402 ~~~~~~~~~~~~~ss~~~P~~~~~~d~~-~~~~~l~~~~~~~~~-~~~~~e~v~~~s~DG~~i~~~l~~P~~~~~~~--~ 477 (711)
T 4hvt_A 402 SSYEEEEEALITIENSIVPPTIYLWVKT-HELKIIRKALYSFDS-ENYVLEQKEATSFDGVKIPYFLVYKKGIKFDG--K 477 (711)
T ss_dssp ECCTTCSCEEEEEECSSSCCEEEEECTT-SCEEEEECCSSCCCG-GGEEEEEEEEECTTSCEEEEEEEEETTCCCSS--C
T ss_pred eecCcCCEEEEEEecCCCCCEEEEEeCC-CcEEEEecCCcccCc-ccCeeEEEEEECCCCeEEEEEEEecCCCCCCC--C
Confidence 4456788899999999999999999988 888888877644433 33588999999999999999999999875433 5
Q ss_pred ceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCCCCc---hhhHHHHHHHHHHH
Q 005240 513 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPN---DRFVEQLVSSAEAA 589 (706)
Q Consensus 513 ~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~---~~~~~~~~~D~~~~ 589 (706)
+|+||++|||+... .. ..+ .....+.|+++||+|+.+++||+.++|..+.. ..+....++|+.++
T Consensus 478 ~P~vl~~HGG~~~~--------~~-~~~---~~~~~q~la~~Gy~Vv~~d~RGsg~~G~~~~~~~~~~~~~~~~~D~~aa 545 (711)
T 4hvt_A 478 NPTLLEAYGGFQVI--------NA-PYF---SRIKNEVWVKNAGVSVLANIRGGGEFGPEWHKSAQGIKRQTAFNDFFAV 545 (711)
T ss_dssp CCEEEECCCCTTCC--------CC-CCC---CHHHHHHTGGGTCEEEEECCTTSSTTCHHHHHTTSGGGTHHHHHHHHHH
T ss_pred ccEEEEECCCCCCC--------CC-Ccc---cHHHHHHHHHCCCEEEEEeCCCCCCcchhHHHhhhhccCcCcHHHHHHH
Confidence 89999999997532 11 111 11233588999999999999999888876542 34556789999999
Q ss_pred HHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCCCCCC---------------Ccc---------
Q 005240 590 VEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLT---------------PFG--------- 645 (706)
Q Consensus 590 ~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d~~~~---------------~~~--------- 645 (706)
++||++++++|++||+|+|+|+||+|+++++.++|++|+|+|+.+|++|+... |..
T Consensus 546 v~~L~~~~~~d~~rI~i~G~S~GG~la~~~a~~~pd~f~a~V~~~pv~D~~~~~~~~~~~~~~~~~G~p~~~~~~~~l~~ 625 (711)
T 4hvt_A 546 SEELIKQNITSPEYLGIKGGSNGGLLVSVAMTQRPELFGAVACEVPILDMIRYKEFGAGHSWVTEYGDPEIPNDLLHIKK 625 (711)
T ss_dssp HHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCCCTTTGGGSTTGGGGHHHHCCTTSHHHHHHHHH
T ss_pred HHHHHHcCCCCcccEEEEeECHHHHHHHHHHHhCcCceEEEEEeCCccchhhhhccccchHHHHHhCCCcCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998875321 000
Q ss_pred -----------------------------chHHHHHHHH-HhCCCcEEEEEeCCCCccCCCc-ccHHHHHHHHHHHHHHH
Q 005240 646 -----------------------------FQAERFFDAL-KGHGALSRLVLLPFEHHVYAAR-ENVMHVIWETDRWLQKY 694 (706)
Q Consensus 646 -----------------------------~~~~~~~~~l-~~~~~~~~~~~~~~~~H~~~~~-~~~~~~~~~~~~f~~~~ 694 (706)
.++.+|+++| ++.++++++++||+++|++... ......+..+.+||.++
T Consensus 626 ~SP~~~v~~i~~~pPvLii~G~~D~~Vp~~~s~~~~~aL~~~~g~pv~l~~~p~~gHg~~~~~~~~~~~~~~i~~FL~~~ 705 (711)
T 4hvt_A 626 YAPLENLSLTQKYPTVLITDSVLDQRVHPWHGRIFEYVLAQNPNTKTYFLESKDSGHGSGSDLKESANYFINLYTFFANA 705 (711)
T ss_dssp HCGGGSCCTTSCCCEEEEEEETTCCSSCTHHHHHHHHHHTTCTTCCEEEEEESSCCSSSCSSHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHhhcCCCCCEEEEecCCCCcCChHHHHHHHHHHHHHcCCCEEEEEECCCCCcCcCCcchHHHHHHHHHHHHHHH
Confidence 0223899999 9999999999999999998653 33567778899999999
Q ss_pred hccC
Q 005240 695 CLSN 698 (706)
Q Consensus 695 l~~~ 698 (706)
|+.+
T Consensus 706 Lg~~ 709 (711)
T 4hvt_A 706 LKLK 709 (711)
T ss_dssp HTCC
T ss_pred hCCc
Confidence 8653
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-24 Score=231.79 Aligned_cols=344 Identities=12% Similarity=0.083 Sum_probs=215.8
Q ss_pred CCCeeeeecCCCC---CcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEE
Q 005240 18 LGPEKEVHGYPDG---AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVW 94 (706)
Q Consensus 18 ~g~~~~i~~~~~~---~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~w 94 (706)
+++.++++..+.. .....|+|||||++|||.+.. ++..+||++|+++++.++++..... ....+.|
T Consensus 20 g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~-------~g~~~l~~~d~~~g~~~~lt~~~~~----~~~~~~~ 88 (388)
T 3pe7_A 20 GAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAF-------DGPWNYYLLDLNTQVATQLTEGRGD----NTFGGFL 88 (388)
T ss_dssp CCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECT-------TSSCEEEEEETTTCEEEECCCSSCB----CSSSCEE
T ss_pred CcceEEecCCcccccchhhcCccCCCCCCEEEEEEcC-------CCCceEEEEeCCCCceEEeeeCCCC----CccceEE
Confidence 3677777754432 123449999999999998752 4567999999999999999866543 1236799
Q ss_pred ecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCCceecCC
Q 005240 95 VNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGT 173 (706)
Q Consensus 95 SpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~~~lt~ 173 (706)
||||++|+|... ...||++++ +|+.+.+..
T Consensus 89 spdg~~l~~~~~-------------------------------------------------~~~l~~~d~~~g~~~~~~~ 119 (388)
T 3pe7_A 89 SPDDDALFYVKD-------------------------------------------------GRNLMRVDLATLEENVVYQ 119 (388)
T ss_dssp CTTSSEEEEEET-------------------------------------------------TTEEEEEETTTCCEEEEEE
T ss_pred cCCCCEEEEEeC-------------------------------------------------CCeEEEEECCCCcceeeee
Confidence 999999999852 157999999 456665544
Q ss_pred C--ceE--eeeeeCCCCcEEEEEeeccCcc-ccc--------ccccccceEEEEecCCCeeEEcccCCCCCCCCcccCcc
Q 005240 174 P--AVY--TAVEPSPDQKYVLITSMHRPYS-YKV--------PCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240 (706)
Q Consensus 174 ~--~~~--~~~~~SpDG~~i~~~~~~~~~~-~~~--------~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~ 240 (706)
. ... ....++|||+.|+......... ... ........|+++++.+++.+.++.....
T Consensus 120 ~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~---------- 189 (388)
T 3pe7_A 120 VPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQW---------- 189 (388)
T ss_dssp CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSC----------
T ss_pred chhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCcc----------
Confidence 3 223 2334599999998654332110 000 0011236899999998888888754321
Q ss_pred CCCCcceeeec-CCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecc--cccccceecCCCceEEEEe
Q 005240 241 REGMRSISWRA-DKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLD--LRFRSVSWCDDSLALVNET 317 (706)
Q Consensus 241 ~~g~~~~~~sp-dg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~--~~~~~~~wspDg~~l~~~~ 317 (706)
...+.||| ||+. |+|+.... .+. ....|+++|+ ++++.+.|+... ..+..+.|||||+.|+|.+
T Consensus 190 ---~~~~~~sp~dg~~-l~~~~~~~-~~~-----~~~~l~~~d~---~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~ 256 (388)
T 3pe7_A 190 ---LGHPIYRPYDDST-VAFCHEGP-HDL-----VDARMWLINE---DGTNMRKVKTHAEGESCTHEFWVPDGSALVYVS 256 (388)
T ss_dssp ---EEEEEEETTEEEE-EEEEECSC-TTT-----SSCSEEEEET---TSCCCEESCCCCTTEEEEEEEECTTSSCEEEEE
T ss_pred ---ccccEECCCCCCE-EEEEEecC-CCC-----CcceEEEEeC---CCCceEEeeeCCCCcccccceECCCCCEEEEEe
Confidence 23679999 9988 88775421 110 1235899988 677888887654 3467889999999998876
Q ss_pred ecccc-ceEEEEEcCCCCCCCceeeecCcc-cccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCC
Q 005240 318 WYKTS-QTRTWLVCPGSKDVAPRVLFDRVF-ENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIP 395 (706)
Q Consensus 318 ~~~~~-~~~l~~~d~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 395 (706)
...+. ...||++|++++ +.+.+..... ......+. ...|||||++|++..... .|.+. ....
T Consensus 257 ~~~~~~~~~l~~~d~~~g--~~~~l~~~~~~~~~~~~~~--~~~~spdg~~l~~~~~~~-----------~~~~~-~~~~ 320 (388)
T 3pe7_A 257 YLKGSPDRFIYSADPETL--ENRQLTSMPACSHLMSNYD--GSLMVGDGSDAPVDVQDD-----------SGYKI-ENDP 320 (388)
T ss_dssp EETTCCCEEEEEECTTTC--CEEEEEEECCEEEEEECTT--SSEEEEEECCC------------------------CCCC
T ss_pred cCCCCCcceEEEEecCCC--ceEEEEcCCCceeeeecCC--CCeEccCCCcceeEeeec-----------ccccc-CCCC
Confidence 54332 236999999985 4455533221 00000111 136899999998865320 00010 1234
Q ss_pred ceeeeecCCCceeeeecccchhhhhhhh-hhccCCCceecccCCCEEEEEEecCCCCcEEEEEECCCCc
Q 005240 396 FLDLFDINTGSKERIWESNREKYFETAV-ALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKK 463 (706)
Q Consensus 396 ~l~~~d~~~g~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~s~Dg~~l~~~~~~~~~p~~v~~~~~~~~~ 463 (706)
.|+++|+++++.++|...... ...+. .-......+.|||||++|+|+.... ..++||++++..+.
T Consensus 321 ~i~~~d~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~-g~~~l~~~~l~~~~ 386 (388)
T 3pe7_A 321 FLYVFNMKNGTQHRVARHDTS--WKVFEGDRQVTHPHPSFTPDDKQILFTSDVH-GKPALYLATLPESV 386 (388)
T ss_dssp EEEEEETTTTEEEEEEECCCC--CCCBTTBSSTTCCCCEECTTSSEEEEEECTT-SSCEEEEEECCGGG
T ss_pred EEEEEeccCCceEEeccccCc--ccccccccccCCCCccCCCCCCEEEEEecCC-CceeEEEEECChhc
Confidence 689999999988887655320 00000 0000123579999999999986554 66789999986543
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.2e-22 Score=212.89 Aligned_cols=326 Identities=10% Similarity=0.073 Sum_probs=200.4
Q ss_pred ccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCC
Q 005240 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDP 112 (706)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~ 112 (706)
+..++|||||++|||+... ++..+||++++++++.++++..... ....+.|||||++|+|....
T Consensus 38 ~~~~~~SpdG~~l~~~~~~-------~g~~~l~~~d~~~~~~~~l~~~~~~----~~~~~~~spdg~~l~~~~~~----- 101 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDF-------DGNRNYYLLNLETQQAVQLTEGKGD----NTFGGFISTDERAFFYVKNE----- 101 (396)
T ss_dssp TTSCCBCTTSCEEEEEECT-------TSSCEEEEEETTTTEEEECCCSSCB----CTTTCEECTTSSEEEEEETT-----
T ss_pred eecCcCCCCCCEEEEEEec-------CCCceEEEEECCCCcEEEeecCCCC----ccccceECCCCCEEEEEEcC-----
Confidence 6789999999999998752 4557899999999999999765432 12348999999999988531
Q ss_pred CCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccC-CCceecCCC--ceEee----------
Q 005240 113 PKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD-GTAKDFGTP--AVYTA---------- 179 (706)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~-g~~~~lt~~--~~~~~---------- 179 (706)
.+||+++++ |+.++++.. .....
T Consensus 102 --------------------------------------------~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~ 137 (396)
T 3c5m_A 102 --------------------------------------------LNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCT 137 (396)
T ss_dssp --------------------------------------------TEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSS
T ss_pred --------------------------------------------CcEEEEECCCCCcEEEEecccccCCCCCEEEeccCC
Confidence 468899984 466666543 11111
Q ss_pred ---------eeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeee
Q 005240 180 ---------VEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWR 250 (706)
Q Consensus 180 ---------~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~s 250 (706)
+.|||||++|++...... .....|+++++++++.+.+..... ....+.||
T Consensus 138 ~~~~~~~~~~~~spdg~~~~~~~~~~~--------~~~~~l~~~d~~~g~~~~~~~~~~-------------~~~~~~~s 196 (396)
T 3c5m_A 138 KLVGIEILKRDWQPLTSWEKFAEFYHT--------NPTCRLIKVDIETGELEVIHQDTA-------------WLGHPIYR 196 (396)
T ss_dssp EEEEEEEEGGGCCCCCSHHHHHHHHHT--------CCCEEEEEEETTTCCEEEEEEESS-------------CEEEEEEE
T ss_pred ccccccccccccCCCCcceeeeeeccC--------CCcceEEEEECCCCcEEeeccCCc-------------ccccceEC
Confidence 345666665554331000 113589999999888777764321 13367999
Q ss_pred c-CCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeec--ccccccceecCCCceEEEEeeccc-cceEE
Q 005240 251 A-DKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL--DLRFRSVSWCDDSLALVNETWYKT-SQTRT 326 (706)
Q Consensus 251 p-dg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~--~~~~~~~~wspDg~~l~~~~~~~~-~~~~l 326 (706)
| ||+. |+|+.. .... .....|+++++ ++++.+.++.. ...+..+.|||||+.|++.+...+ ....|
T Consensus 197 p~dg~~-l~~~~~--~~~~----~~~~~l~~~d~---~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l 266 (396)
T 3c5m_A 197 PFDDST-VGFCHE--GPHD----LVDARMWLVNE---DGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVI 266 (396)
T ss_dssp TTEEEE-EEEEEC--SCSS----SCSCCCEEEET---TSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEE
T ss_pred CCCCCE-EEEEec--CCCC----CCCceEEEEEC---CCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceE
Confidence 9 7877 877753 1110 01135889988 67777777653 235677899999999998764432 22459
Q ss_pred EEEcCCCCCCCceeeecCcccccccCCCCCceEecc-CCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCC
Q 005240 327 WLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTS-TGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTG 405 (706)
Q Consensus 327 ~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g 405 (706)
|++|++++ +.+.+.... +.. +.|+| ||+.+++.... .. +.....+.........|+++|++++
T Consensus 267 ~~~d~~~g--~~~~l~~~~--------~~~-~~~s~~dg~~l~~~~~~--~p---~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (396)
T 3c5m_A 267 YKANPETL--ENEEVMVMP--------PCS-HLMSNFDGSLMVGDGCD--AP---VDVADADSYNIENDPFLYVLNTKAK 330 (396)
T ss_dssp EEECTTTC--CEEEEEECC--------SEE-EEEECSSSSEEEEEECC--C-------------CCCCCCEEEEEETTTT
T ss_pred EEEECCCC--CeEEeeeCC--------CCC-CCccCCCCceEEEecCC--cc---eeeccccccccCCCCcEEEEecccC
Confidence 99999884 344443221 111 67899 99977764310 00 0000000000012346889999988
Q ss_pred ceeeeecccchhhhhhh-hhhccCCCceecccCCCEEEEEEecCCCCcEEEEEECCCCceeEee
Q 005240 406 SKERIWESNREKYFETA-VALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQIT 468 (706)
Q Consensus 406 ~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~s~Dg~~l~~~~~~~~~p~~v~~~~~~~~~~~~lt 468 (706)
+.++|...... ...+ .........+.|||||++|+++.... ..++||++++.+++.+.+.
T Consensus 331 ~~~~l~~~~~~--~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~-~~~~l~~~~~~~~~~~~~~ 391 (396)
T 3c5m_A 331 SAQKLCKHSTS--WDVLDGDRQITHPHPSFTPNDDGVLFTSDFE-GVPAIYIADVPESYKHLEH 391 (396)
T ss_dssp BCCEEEECCCC--CCCBTTBSSTTCCCCEECTTSSEEEEEECTT-SSCEEEEEECCTTCC----
T ss_pred ceEEccCCCCc--cccccccccCCCCCceEccCCCeEEEEecCC-CCceEEEEEEccccccccc
Confidence 87777543320 0000 00000123468999999999887654 5678999998887765553
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.90 E-value=3.5e-22 Score=230.73 Aligned_cols=334 Identities=9% Similarity=-0.006 Sum_probs=211.9
Q ss_pred ccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCc-cccccccceEEecCCcEEEEEecCCCCC
Q 005240 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI-CLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (706)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~-~~~~~~~~~~wSpDg~~l~~~~~~~~~~ 111 (706)
...++|||||+.|+.. ...|+++++++|+.+++...... .......++.|||||++|+|.+......
T Consensus 19 ~~~~~w~~dg~~~~~~------------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~ 86 (740)
T 4a5s_A 19 LYSLRWISDHEYLYKQ------------ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQW 86 (740)
T ss_dssp CCCEEECSSSEEEEEE------------TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECS
T ss_pred ccccEECCCCcEEEEc------------CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeE
Confidence 5689999999776552 25899999999998777543321 1111123489999999999976421100
Q ss_pred CCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCCceecCCC-ceEeeeeeCCCCcEE
Q 005240 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYV 189 (706)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~~~lt~~-~~~~~~~~SpDG~~i 189 (706)
.....+.+|++|+ +|+.++|+.. ..+..++|||||++|
T Consensus 87 ----------------------------------------r~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~l 126 (740)
T 4a5s_A 87 ----------------------------------------RHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKL 126 (740)
T ss_dssp ----------------------------------------SSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCE
T ss_pred ----------------------------------------EEccceEEEEEECCCCcEEEcccCCCcceeeEECCCCCEE
Confidence 0012378999999 5588888775 678899999999999
Q ss_pred EEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCC----CcccCcc--CCCCcceeeecCCCceEEEEEec
Q 005240 190 LITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDI----PVCYNSV--REGMRSISWRADKPSTLYWVEAQ 263 (706)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~----p~~~~~~--~~g~~~~~~spdg~~~l~~~~~~ 263 (706)
+|... .+|+++++.+++.++|+........ +.++... ......+.|||||+. |+|....
T Consensus 127 a~~~~--------------~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~-la~~~~d 191 (740)
T 4a5s_A 127 AYVWN--------------NDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTF-LAYAQFN 191 (740)
T ss_dssp EEEET--------------TEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSE-EEEEEEE
T ss_pred EEEEC--------------CeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCE-EEEEEEc
Confidence 99863 3799999998888888764322110 1000000 011235799999998 8877543
Q ss_pred cCCCCcc------------------------ccCccceeeeecCCCCCC---C---CceEEee------cccccccceec
Q 005240 264 DRGDANV------------------------EVSPRDIIYTQPAEPAEG---E---KPEILHK------LDLRFRSVSWC 307 (706)
Q Consensus 264 ~~~~~~~------------------------~~~~~~~l~~~d~~~~~~---~---~~~~l~~------~~~~~~~~~ws 307 (706)
.+..... .......|+++|+ ++ + +.++|.. ....+..++||
T Consensus 192 ~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ws 268 (740)
T 4a5s_A 192 DTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNT---DSLSSVTNATSIQITAPASMLIGDHYLCDVTWA 268 (740)
T ss_dssp CTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEET---TSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEE
T ss_pred ccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEEC---CCCCCCCcceEEEecCCccCCCCCeEEEEEEEe
Confidence 2211100 0011126899999 66 6 5556653 45567889999
Q ss_pred CCCceEEEEeeccccceEEEEEcCCCCCC-----Cceeee-cCcccccccCCCCCceEeccCCCEEE-EeeeccCCcceE
Q 005240 308 DDSLALVNETWYKTSQTRTWLVCPGSKDV-----APRVLF-DRVFENVYSDPGSPMMTRTSTGTNVI-AKIKKENDEQIY 380 (706)
Q Consensus 308 pDg~~l~~~~~~~~~~~~l~~~d~~~~~~-----~~~~l~-~~~~~~~~~~~~~~~~~~s~dg~~l~-~~~~~~~~~~~~ 380 (706)
|||+.+++..+.......|+++|+++++. ..+.++ +..-..+. ......+.|||||+.|+ +...+
T Consensus 269 pdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~-~~~~~~p~fspDG~~l~~~~s~~------- 340 (740)
T 4a5s_A 269 TQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVG-RFRPSEPHFTLDGNSFYKIISNE------- 340 (740)
T ss_dssp ETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSS-SSSCCCCEECTTSSEEEEEEECT-------
T ss_pred CCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEc-cCcCCCceEcCCCCEEEEEEEcC-------
Confidence 99998877765555566899999988530 122221 21111111 00122478999999988 44322
Q ss_pred EEEecCCCCCCCCCCceeeeecCCCceeeeecccchhhhhhhhhhccCCCceecccCCCEEEEEEec--C-CCCcEEEEE
Q 005240 381 ILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKES--K-TEITQYHIL 457 (706)
Q Consensus 381 ~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~--~-~~p~~v~~~ 457 (706)
.+..+|+++|+++++.++|+..... + ...+++|+++|+|+.+. . ..-..||++
T Consensus 341 -----------~G~~~l~~~~~~~~~~~~lT~g~~~-----v--------~~~~~~d~~~i~f~~~~~~~~~~~~~ly~v 396 (740)
T 4a5s_A 341 -----------EGYRHICYFQIDKKDCTFITKGTWE-----V--------IGIEALTSDYLYYISNEYKGMPGGRNLYKI 396 (740)
T ss_dssp -----------TSCEEEEEEETTCSSCEESCCSSSC-----E--------EEEEEECSSEEEEEESCGGGCTTCBEEEEE
T ss_pred -----------CCceEEEEEECCCCceEecccCCEE-----E--------EEEEEEeCCEEEEEEecCCCCCceeEEEEE
Confidence 2245799999998888888765421 1 11244678899998765 2 234679999
Q ss_pred ECCCCcee-Eee
Q 005240 458 SWPLKKSS-QIT 468 (706)
Q Consensus 458 ~~~~~~~~-~lt 468 (706)
++.+++.+ +||
T Consensus 397 ~~~g~~~~~~lt 408 (740)
T 4a5s_A 397 QLIDYTKVTCLS 408 (740)
T ss_dssp ETTEEEEEEESS
T ss_pred ECCCCCcceeec
Confidence 98876654 566
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-21 Score=235.22 Aligned_cols=369 Identities=14% Similarity=0.041 Sum_probs=231.1
Q ss_pred ceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccc
Q 005240 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (706)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 85 (706)
.|++.+++. |++++++..+. .+..++|||||++|||++..+. ..+..+||++++++++.++|+.+...
T Consensus 34 ~l~~~~~~g----g~~~~lt~~~~--~v~~~~~SPDG~~la~~s~~~~----~~~~~~i~~~d~~~g~~~~lt~~~~~-- 101 (1045)
T 1k32_A 34 DLWEHDLKS----GSTRKIVSNLG--VINNARFFPDGRKIAIRVMRGS----SLNTADLYFYNGENGEIKRITYFSGK-- 101 (1045)
T ss_dssp EEEEEETTT----CCEEEEECSSS--EEEEEEECTTSSEEEEEEEEST----TCCEEEEEEEETTTTEEEECCCCCEE--
T ss_pred cEEEEECCC----CcEEEeeeCCC--cccCeEECCCCCEEEEEEeecc----CCCCCeEEEEECCCCCeEEcccCCCc--
Confidence 688999966 99999985433 4889999999999999976311 13557999999999999999865542
Q ss_pred cccc-------cceEEecCCcEEEEEecCCCCC----CCCCCCCCCCCceeecCCCc--------cc-------------
Q 005240 86 NAVF-------GSFVWVNNSTLLIFTIPSSRRD----PPKKTMVPLGPKIQSNEQKN--------II------------- 133 (706)
Q Consensus 86 ~~~~-------~~~~wSpDg~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~--------~~------------- 133 (706)
+ ..+.|||||+ |+|.+...... ....-....+...+...... .+
T Consensus 102 ---~~~~~~~~~~~~~SpDg~-ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~ 177 (1045)
T 1k32_A 102 ---STGRRMFTDVAGFDPDGN-LIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWK 177 (1045)
T ss_dssp ---EETTEECSEEEEECTTCC-EEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTST
T ss_pred ---ccccccccccccCCCCCE-EEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccc
Confidence 4 6899999999 66655322100 00000000000000000000 00
Q ss_pred ------ccccch--h---------------ccCCchhhhhhh--hcccceEEEEccCC-CceecCCCceEeeeeeCCCCc
Q 005240 134 ------ISRMTD--N---------------LLKDEYDESLFD--YYTTAQLVLGSLDG-TAKDFGTPAVYTAVEPSPDQK 187 (706)
Q Consensus 134 ------~~~~~~--~---------------~~~~~~d~~~~~--~~~~~~l~~~~l~g-~~~~lt~~~~~~~~~~SpDG~ 187 (706)
....+. . ...+..+...+. ..+...||.++++| ..++++.......++|||||+
T Consensus 178 ~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~ 257 (1045)
T 1k32_A 178 GYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGR 257 (1045)
T ss_dssp TCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSS
T ss_pred cccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCCEEEEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcCCCC
Confidence 000000 0 000000100000 01335788888865 777777664455679999999
Q ss_pred EEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeee-cCCCceEEEEEeccCC
Q 005240 188 YVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWR-ADKPSTLYWVEAQDRG 266 (706)
Q Consensus 188 ~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~s-pdg~~~l~~~~~~~~~ 266 (706)
+|+|... ..|++|++++..+..+..... ...+.+.. .......++|| |||+. |++..
T Consensus 258 ~la~~~~--------------~~i~~~d~~~~~l~~l~~~~~-~~~~~~~~-~~~~v~~~~~S~pdG~~-la~~~----- 315 (1045)
T 1k32_A 258 RILFSKG--------------GSIYIFNPDTEKIEKIEIGDL-ESPEDRII-SIPSKFAEDFSPLDGDL-IAFVS----- 315 (1045)
T ss_dssp CEEEEET--------------TEEEEECTTTCCEEECCCCCC-CBCCSEEE-ECGGGGEEEEEECGGGC-EEEEE-----
T ss_pred EEEEEeC--------------CEEEEecCCceEeeeeccCcc-cccccccc-cccccceeeecCCCCCE-EEEEE-----
Confidence 9998741 379999997666655443211 11111100 00124578999 99998 77664
Q ss_pred CCccccCccceeeeecCCCCCCCCceEEeeccc-ccccceecCCCceEEEEeeccccceEEE-EEcCCCCCCCceeeecC
Q 005240 267 DANVEVSPRDIIYTQPAEPAEGEKPEILHKLDL-RFRSVSWCDDSLALVNETWYKTSQTRTW-LVCPGSKDVAPRVLFDR 344 (706)
Q Consensus 267 ~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~-~~~~~~wspDg~~l~~~~~~~~~~~~l~-~~d~~~~~~~~~~l~~~ 344 (706)
+..|+++++ .+++.+.++.... .+..+.|+ ||+.|++.+. ..+|| +++++++ +.+.+..
T Consensus 316 --------~~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~----~~~l~~~~d~~~~--~~~~l~~- 376 (1045)
T 1k32_A 316 --------RGQAFIQDV---SGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTR----EGDFLGIYDYRTG--KAEKFEE- 376 (1045)
T ss_dssp --------TTEEEEECT---TSSBEEECSCCSCEEEEEECSS-SEEEEEEEET----TEEEEEEEETTTC--CEEECCC-
T ss_pred --------cCEEEEEcC---CCCceEEccCCCcceEEeeeEc-CCCeEEEEEC----CCceEEEEECCCC--CceEecC-
Confidence 124888888 6667666765555 78899999 9999998763 45799 9999874 4455541
Q ss_pred cccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeeecccchhhhhhhhh
Q 005240 345 VFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVA 424 (706)
Q Consensus 345 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~ 424 (706)
... ....+.|||||++|++.... ..|+++|+++|+.+.+.....
T Consensus 377 ~~~------~~~~~~~SpDG~~la~~~~~---------------------~~v~~~d~~tg~~~~~~~~~~--------- 420 (1045)
T 1k32_A 377 NLG------NVFAMGVDRNGKFAVVANDR---------------------FEIMTVDLETGKPTVIERSRE--------- 420 (1045)
T ss_dssp CCC------SEEEEEECTTSSEEEEEETT---------------------SEEEEEETTTCCEEEEEECSS---------
T ss_pred Ccc------ceeeeEECCCCCEEEEECCC---------------------CeEEEEECCCCceEEeccCCC---------
Confidence 111 11247899999999886521 257789999998877764321
Q ss_pred hccCCCceecccCCCEEEEEEecC------CCCcEEEEEECCCCceeEeec
Q 005240 425 LVFGQGEEDINLNQLKILTSKESK------TEITQYHILSWPLKKSSQITN 469 (706)
Q Consensus 425 ~~~~~~~~~~s~Dg~~l~~~~~~~------~~p~~v~~~~~~~~~~~~lt~ 469 (706)
.....+.|||||++|+++.... ..+..|++||+.+++...++.
T Consensus 421 --~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~ 469 (1045)
T 1k32_A 421 --AMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATT 469 (1045)
T ss_dssp --SCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSC
T ss_pred --CCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeC
Confidence 1123579999999999887654 456789999999888666654
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.8e-21 Score=221.70 Aligned_cols=330 Identities=13% Similarity=0.152 Sum_probs=209.9
Q ss_pred CcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccc--------------------ccccc
Q 005240 31 AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL--------------------NAVFG 90 (706)
Q Consensus 31 ~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~--------------------~~~~~ 90 (706)
..+..++|||||++|||++..+. ......||++|+++++.++++......- ...+.
T Consensus 37 ~~~~~~~~SpdG~~la~~~~~d~----~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 112 (741)
T 2ecf_A 37 PTLMKPKVAPDGSRVTFLRGKDS----DRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIV 112 (741)
T ss_dssp CCCEEEEECTTSSEEEEEECCSS----CTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESC
T ss_pred CCCCCceEecCCCEEEEEeccCC----CCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcc
Confidence 35788999999999999874210 0224689999999999888875432100 01257
Q ss_pred ceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CC---
Q 005240 91 SFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG--- 166 (706)
Q Consensus 91 ~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g--- 166 (706)
.++|||||++|++.+. .+|+++++ ++
T Consensus 113 ~~~~SpDg~~l~~~~~--------------------------------------------------~~i~~~d~~~~~~~ 142 (741)
T 2ecf_A 113 DYQWSPDAQRLLFPLG--------------------------------------------------GELYLYDLKQEGKA 142 (741)
T ss_dssp CCEECTTSSEEEEEET--------------------------------------------------TEEEEEESSSCSTT
T ss_pred eeEECCCCCEEEEEeC--------------------------------------------------CcEEEEECCCCCcc
Confidence 8999999999998742 57999999 55
Q ss_pred CceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCC---CCcccCcc-C
Q 005240 167 TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAED---IPVCYNSV-R 241 (706)
Q Consensus 167 ~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~---~p~~~~~~-~ 241 (706)
+.++++.. ..+..++|||||++|+|.+. .+|++|++++++.++++....... .+.+.... .
T Consensus 143 ~~~~l~~~~~~~~~~~~SPDG~~la~~~~--------------~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~ 208 (741)
T 2ecf_A 143 AVRQLTHGEGFATDAKLSPKGGFVSFIRG--------------RNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEM 208 (741)
T ss_dssp SCCBCCCSSSCEEEEEECTTSSEEEEEET--------------TEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHS
T ss_pred eEEEcccCCcccccccCCCCCCEEEEEeC--------------CcEEEEecCCCCEEEeccCCccceeccccceeeeecc
Confidence 66777766 67889999999999999863 279999999988888766432100 00000000 0
Q ss_pred CCCcceeeecCCCceEEEEEeccCCCCcc---------------------ccCccceeeeecCCCCCC-CCceEEee---
Q 005240 242 EGMRSISWRADKPSTLYWVEAQDRGDANV---------------------EVSPRDIIYTQPAEPAEG-EKPEILHK--- 296 (706)
Q Consensus 242 ~g~~~~~~spdg~~~l~~~~~~~~~~~~~---------------------~~~~~~~l~~~d~~~~~~-~~~~~l~~--- 296 (706)
.....+.|||||+. |++.....+..... .......|+++|+ ++ ++.+.+..
T Consensus 209 ~~~~~~~~SpDg~~-l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~---~~~~~~~~~~~~~~ 284 (741)
T 2ecf_A 209 DRHTGYWWAPDDSA-IAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISP---AEQAQTQWIDLGKE 284 (741)
T ss_dssp CCCCSEEECTTSSC-EEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECS---STTCCCEEECCCSC
T ss_pred ccccceEECCCCCE-EEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEEC---CCCCceEEecCCCC
Confidence 01347899999998 87765322111000 0001226899998 67 77776652
Q ss_pred cccccccceecCCCceEEEEee-ccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEeeeccC
Q 005240 297 LDLRFRSVSWCDDSLALVNETW-YKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKEN 375 (706)
Q Consensus 297 ~~~~~~~~~wspDg~~l~~~~~-~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~ 375 (706)
....+..+.| |||+.|++... .......|+++|++++ +.+.++........ +....+.|||||+ +++....
T Consensus 285 ~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g--~~~~~~~~~~~~~~--~~~~~~~~spdg~-~~~~~~~-- 356 (741)
T 2ecf_A 285 QDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASN--QQRVLAHETSPTWV--PLHNSLRFLDDGS-ILWSSER-- 356 (741)
T ss_dssp SSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTC--CEEEEEEEECSSCC--CCCSCCEECTTSC-EEEEECT--
T ss_pred cceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCC--ceEEEEEcCCCCcC--CcCCceEECCCCe-EEEEecC--
Confidence 3456788999 99999998764 2335678999999985 44554332211000 0112477999999 4444321
Q ss_pred CcceEEEEecCCCCCCCCCCceeeeecCCCceeeeecccchhhhhhhhhhccCCCce-ecccCCCEEEEEEecCCC-CcE
Q 005240 376 DEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEE-DINLNQLKILTSKESKTE-ITQ 453 (706)
Q Consensus 376 ~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~s~Dg~~l~~~~~~~~~-p~~ 453 (706)
.....||.++++++ .+.|+..... ...+ .|||||+.|+++.+.... ...
T Consensus 357 ----------------~g~~~l~~~~~~~~-~~~l~~~~~~------------v~~~~~~s~dg~~l~~~~~~~~~~~~~ 407 (741)
T 2ecf_A 357 ----------------TGFQHLYRIDSKGK-AAALTHGNWS------------VDELLAVDEKAGLAYFRAGIESARESQ 407 (741)
T ss_dssp ----------------TSSCEEEEECSSSC-EEESCCSSSC------------EEEEEEEETTTTEEEEEECSSCTTCBE
T ss_pred ----------------CCccEEEEEcCCCC-eeeeeecceE------------EEeEeEEeCCCCEEEEEEeCCCCceEE
Confidence 12246888887655 5555433221 1123 599999999887764421 345
Q ss_pred EEEEECCCCceeEeec
Q 005240 454 YHILSWPLKKSSQITN 469 (706)
Q Consensus 454 v~~~~~~~~~~~~lt~ 469 (706)
||.+++.++..++|+.
T Consensus 408 l~~~~~~g~~~~~l~~ 423 (741)
T 2ecf_A 408 IYAVPLQGGQPQRLSK 423 (741)
T ss_dssp EEEEETTCCCCEECCC
T ss_pred EEEEEcCCCCeeeccc
Confidence 7777765655667764
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.89 E-value=2.6e-21 Score=207.37 Aligned_cols=255 Identities=18% Similarity=0.175 Sum_probs=183.5
Q ss_pred CCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCCCCCC
Q 005240 40 PDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVP 119 (706)
Q Consensus 40 PDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~ 119 (706)
+.+++|+|++..+ ......+|+++|++++..+.++.+... +..++|||||++|++.+...
T Consensus 141 ~~~~~l~~~s~~~----~~~~~~~i~i~d~~g~~~~~l~~~~~~-----v~~~~~Spdg~~la~~s~~~----------- 200 (415)
T 2hqs_A 141 AFRTRIAYVVQTN----GGQFPYELRVSDYDGYNQFVVHRSPQP-----LMSPAWSPDGSKLAYVTFES----------- 200 (415)
T ss_dssp CTTCEEEEEEECS----SSSCCEEEEEEETTSCSCEEEEEESSC-----EEEEEECTTSSEEEEEECTT-----------
T ss_pred cCCCEEEEEEecC----CCCccceEEEEcCCCCCCEEEeCCCCc-----ceeeEEcCCCCEEEEEEecC-----------
Confidence 3489999988521 001127999999998888888755443 77899999999999986321
Q ss_pred CCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCCceecCCC-ceEeeeeeCCCCcEEEEEeeccC
Q 005240 120 LGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRP 197 (706)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~ 197 (706)
....|+++|+ +|+.+.+... ..+..++|||||++|+|+.....
T Consensus 201 -----------------------------------~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g 245 (415)
T 2hqs_A 201 -----------------------------------GRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTG 245 (415)
T ss_dssp -----------------------------------SSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTS
T ss_pred -----------------------------------CCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecCC
Confidence 1158999999 5677777655 67889999999999998876432
Q ss_pred cccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccce
Q 005240 198 YSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDI 277 (706)
Q Consensus 198 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~ 277 (706)
..+|++|++.+++.++++..... ...+.|||||+. |++....++ ...
T Consensus 246 ----------~~~i~~~d~~~~~~~~l~~~~~~-------------~~~~~~spdg~~-l~~~s~~~g---------~~~ 292 (415)
T 2hqs_A 246 ----------SLNLYVMDLASGQIRQVTDGRSN-------------NTEPTWFPDSQN-LAFTSDQAG---------RPQ 292 (415)
T ss_dssp ----------SCEEEEEETTTCCEEECCCCSSC-------------EEEEEECTTSSE-EEEEECTTS---------SCE
T ss_pred ----------CceEEEEECCCCCEEeCcCCCCc-------------ccceEECCCCCE-EEEEECCCC---------CcE
Confidence 25799999998887777654321 336799999998 777753221 125
Q ss_pred eeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCc
Q 005240 278 IYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPM 357 (706)
Q Consensus 278 l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~ 357 (706)
||++|+ ++++.+.++.....+..+.|||||+.|++.+... +...|+++|++++ +.+.+.... ....
T Consensus 293 i~~~d~---~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~-g~~~i~~~d~~~~--~~~~l~~~~--------~~~~ 358 (415)
T 2hqs_A 293 VYKVNI---NGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNG-GQQHIAKQDLATG--GVQVLSSTF--------LDET 358 (415)
T ss_dssp EEEEET---TSSCCEECCCSSSEEEEEEECTTSSEEEEEEECS-SCEEEEEEETTTC--CEEECCCSS--------SCEE
T ss_pred EEEEEC---CCCCEEEEecCCCcccCeEECCCCCEEEEEECcC-CceEEEEEECCCC--CEEEecCCC--------CcCC
Confidence 899998 6777777776666777899999999999876433 4568999999984 345553321 1234
Q ss_pred eEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeeeccc
Q 005240 358 MTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESN 414 (706)
Q Consensus 358 ~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~ 414 (706)
+.|+|||++|++.... +....|+++|+++++.++|...+
T Consensus 359 ~~~spdg~~l~~~s~~------------------~~~~~l~~~d~~g~~~~~l~~~~ 397 (415)
T 2hqs_A 359 PSLAPNGTMVIYSSSQ------------------GMGSVLNLVSTDGRFKARLPATD 397 (415)
T ss_dssp EEECTTSSEEEEEEEE------------------TTEEEEEEEETTSCCEEECCCSS
T ss_pred eEEcCCCCEEEEEEcC------------------CCccEEEEEECCCCcEEEeeCCC
Confidence 7899999999887643 12235888998877766665443
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.88 E-value=4.9e-21 Score=205.16 Aligned_cols=233 Identities=15% Similarity=0.130 Sum_probs=175.1
Q ss_pred cceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCcc
Q 005240 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~ 84 (706)
..|++.|++. +..+.++... ..+..++|||||++|||.+.. .+...|+++|+++++.++++.....
T Consensus 159 ~~i~i~d~~g----~~~~~l~~~~--~~v~~~~~Spdg~~la~~s~~-------~~~~~i~~~d~~tg~~~~l~~~~~~- 224 (415)
T 2hqs_A 159 YELRVSDYDG----YNQFVVHRSP--QPLMSPAWSPDGSKLAYVTFE-------SGRSALVIQTLANGAVRQVASFPRH- 224 (415)
T ss_dssp EEEEEEETTS----CSCEEEEEES--SCEEEEEECTTSSEEEEEECT-------TSSCEEEEEETTTCCEEEEECCSSC-
T ss_pred ceEEEEcCCC----CCCEEEeCCC--CcceeeEEcCCCCEEEEEEec-------CCCcEEEEEECCCCcEEEeecCCCc-
Confidence 5788999865 7777776433 348899999999999998742 3457999999999998888755442
Q ss_pred ccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc
Q 005240 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (706)
Q Consensus 85 ~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l 164 (706)
+..+.|||||++|+|..... +..+||++++
T Consensus 225 ----~~~~~~spdg~~la~~~~~~----------------------------------------------g~~~i~~~d~ 254 (415)
T 2hqs_A 225 ----NGAPAFSPDGSKLAFALSKT----------------------------------------------GSLNLYVMDL 254 (415)
T ss_dssp ----EEEEEECTTSSEEEEEECTT----------------------------------------------SSCEEEEEET
T ss_pred ----ccCEEEcCCCCEEEEEEecC----------------------------------------------CCceEEEEEC
Confidence 67899999999999875321 1257999999
Q ss_pred -CCCceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCC
Q 005240 165 -DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVRE 242 (706)
Q Consensus 165 -~g~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~ 242 (706)
+++.++++.. ..+..++|||||++|++.+.... ..+|++|++++++.++++....
T Consensus 255 ~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g----------~~~i~~~d~~~~~~~~l~~~~~------------- 311 (415)
T 2hqs_A 255 ASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAG----------RPQVYKVNINGGAPQRITWEGS------------- 311 (415)
T ss_dssp TTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTS----------SCEEEEEETTSSCCEECCCSSS-------------
T ss_pred CCCCEEeCcCCCCcccceEECCCCCEEEEEECCCC----------CcEEEEEECCCCCEEEEecCCC-------------
Confidence 5577888766 67889999999999999886432 2489999999887777654321
Q ss_pred CCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeecccc
Q 005240 243 GMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTS 322 (706)
Q Consensus 243 g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~ 322 (706)
....+.|||||+. |++....++ ...|+++|+ ++++.+.|+... .+..+.|+|||+.|++.+... +
T Consensus 312 ~~~~~~~spdG~~-l~~~~~~~g---------~~~i~~~d~---~~~~~~~l~~~~-~~~~~~~spdg~~l~~~s~~~-~ 376 (415)
T 2hqs_A 312 QNQDADVSSDGKF-MVMVSSNGG---------QQHIAKQDL---ATGGVQVLSSTF-LDETPSLAPNGTMVIYSSSQG-M 376 (415)
T ss_dssp EEEEEEECTTSSE-EEEEEECSS---------CEEEEEEET---TTCCEEECCCSS-SCEEEEECTTSSEEEEEEEET-T
T ss_pred cccCeEECCCCCE-EEEEECcCC---------ceEEEEEEC---CCCCEEEecCCC-CcCCeEEcCCCCEEEEEEcCC-C
Confidence 1336799999998 776643221 125899999 677777776554 788899999999999886443 4
Q ss_pred ceEEEEEcCCCCCCCceee
Q 005240 323 QTRTWLVCPGSKDVAPRVL 341 (706)
Q Consensus 323 ~~~l~~~d~~~~~~~~~~l 341 (706)
...||++|++++ ..+.|
T Consensus 377 ~~~l~~~d~~g~--~~~~l 393 (415)
T 2hqs_A 377 GSVLNLVSTDGR--FKARL 393 (415)
T ss_dssp EEEEEEEETTSC--CEEEC
T ss_pred ccEEEEEECCCC--cEEEe
Confidence 568999999873 44555
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-20 Score=218.08 Aligned_cols=338 Identities=11% Similarity=0.032 Sum_probs=204.1
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~ 111 (706)
....++|||||+.+ ++.. + ..|+++|+++++.+++...... ....+..++|||||++|++.+......
T Consensus 18 ~~~~~~~spdg~~~-~~~~--------d--g~i~~~d~~~g~~~~~~~~~~~-~~~~v~~~~~SpDg~~l~~~~~~~~~~ 85 (723)
T 1xfd_A 18 HDPEAKWISDTEFI-YREQ--------K--GTVRLWNVETNTSTVLIEGKKI-ESLRAIRYEISPDREYALFSYNVEPIY 85 (723)
T ss_dssp CCCCCCBSSSSCBC-CCCS--------S--SCEEEBCGGGCCCEEEECTTTT-TTTTCSEEEECTTSSEEEEEESCCCCS
T ss_pred cccccEEcCCCcEE-EEeC--------C--CCEEEEECCCCcEEEEeccccc-cccccceEEECCCCCEEEEEecCccce
Confidence 46789999999965 3321 2 3899999999988777643321 001267899999999999986432110
Q ss_pred CCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCCceecCCC-c---eEeeeeeCCCC
Q 005240 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-A---VYTAVEPSPDQ 186 (706)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~~~lt~~-~---~~~~~~~SpDG 186 (706)
. ......|+++++ +|+.++++.. . .+..++|||||
T Consensus 86 ~----------------------------------------~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG 125 (723)
T 1xfd_A 86 Q----------------------------------------HSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKG 125 (723)
T ss_dssp S----------------------------------------SCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSST
T ss_pred e----------------------------------------ecceeeEEEEECCCCceEeccCCccccccccccEECCCC
Confidence 0 001268999999 5577777654 2 36789999999
Q ss_pred cEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCC----CCcccCcc--CCCCcceeeecCCCceEEEE
Q 005240 187 KYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAED----IPVCYNSV--REGMRSISWRADKPSTLYWV 260 (706)
Q Consensus 187 ~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~----~p~~~~~~--~~g~~~~~~spdg~~~l~~~ 260 (706)
++|+|.+.. +|++|++++++.++++....... .+.++... ......+.|||||+. |++.
T Consensus 126 ~~la~~~~~--------------~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~-la~~ 190 (723)
T 1xfd_A 126 QQLIFIFEN--------------NIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTR-LAYA 190 (723)
T ss_dssp TCEEEEETT--------------EEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSE-EEEE
T ss_pred CEEEEEECC--------------eEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCE-EEEE
Confidence 999998752 79999999888887765422110 00000000 001246899999998 7776
Q ss_pred EeccCCCCcc----------------------ccCccceeeeecCCCCCCCCc-eEEeec------ccccccceecCCCc
Q 005240 261 EAQDRGDANV----------------------EVSPRDIIYTQPAEPAEGEKP-EILHKL------DLRFRSVSWCDDSL 311 (706)
Q Consensus 261 ~~~~~~~~~~----------------------~~~~~~~l~~~d~~~~~~~~~-~~l~~~------~~~~~~~~wspDg~ 311 (706)
.......... .......|+++|+ ++++. ++|... ...+..+.|||||+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~---~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~ 267 (723)
T 1xfd_A 191 AINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGL---NGPTHDLEMMPPDDPRMREYYITMVKWATSTK 267 (723)
T ss_dssp EEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEES---SSSCCCEECCCCCCGGGSSEEEEEEEESSSSE
T ss_pred EECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEEC---CCCceeEEeeCCccCCCccceeEEEEEeCCCe
Confidence 5432110000 0011236999998 66663 556543 45567899999999
Q ss_pred eEEEEeeccccceEEEEEcCCCCCCCceeeecCc-ccccccCCCCCceEeccCCCEEEEe-eeccCCcceEEEEecCCCC
Q 005240 312 ALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRV-FENVYSDPGSPMMTRTSTGTNVIAK-IKKENDEQIYILLNGRGFT 389 (706)
Q Consensus 312 ~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~s~dg~~l~~~-~~~~~~~~~~~~~~~~g~~ 389 (706)
.|++..........|+++|++++ +...+.... -..+. .....+.|||||++|++. .... +.
T Consensus 268 ~l~~~~~~~~~~~~i~~~d~~~g--~~~~~~~~~~~~~~~--~~~~~~~~spdg~~l~~~~~~~~------------~~- 330 (723)
T 1xfd_A 268 VAVTWLNRAQNVSILTLCDATTG--VCTKKHEDESEAWLH--RQNEEPVFSKDGRKFFFIRAIPQ------------GG- 330 (723)
T ss_dssp EEEEEEETTSCEEEEEEEETTTC--CEEEEEEEECSSCCC--CCCCCCEECTTSCSEEEEEEECC------------SS-
T ss_pred EEEEEEcCCCCeEEEEEEeCCCC--cceEEEEeccCCEEe--ccCCCceEcCCCCeEEEEEeccc------------CC-
Confidence 88776554445578999999985 344443211 11110 001247899999999886 3221 10
Q ss_pred CCCCCCceeeee-cCCCc---eeeeecccchhhhhhhhhhccCCCceecccCCCEEEEEEecCC-CCcEEEEEECCCC-c
Q 005240 390 PEGNIPFLDLFD-INTGS---KERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKT-EITQYHILSWPLK-K 463 (706)
Q Consensus 390 ~~~~~~~l~~~d-~~~g~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~-~p~~v~~~~~~~~-~ 463 (706)
......|+.+| ..+++ .+.|+..... + ...+.|||||+.|+|+..... .-..||.+++.++ +
T Consensus 331 -~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~-----~------~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~ 398 (723)
T 1xfd_A 331 -RGKFYHITVSSSQPNSSNDNIQSITSGDWD-----V------TKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFN 398 (723)
T ss_dssp -SSCEEEEEEECSSCCSSSCCCCBSCCSSSC-----E------EEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCC
T ss_pred -CcceeEEEEEeccCCCCccceeEeecCCeE-----E------EeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCC
Confidence 01133578888 55565 5555432211 0 012589999999998776531 3345666665554 3
Q ss_pred eeEee
Q 005240 464 SSQIT 468 (706)
Q Consensus 464 ~~~lt 468 (706)
.+.|+
T Consensus 399 ~~~l~ 403 (723)
T 1xfd_A 399 RQCLS 403 (723)
T ss_dssp CBCSS
T ss_pred cceec
Confidence 44454
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.4e-20 Score=197.94 Aligned_cols=310 Identities=9% Similarity=0.005 Sum_probs=199.7
Q ss_pred ceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchh
Q 005240 61 KLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDN 140 (706)
Q Consensus 61 ~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (706)
..++|+....+++.+++|..........+..++|||||++|+|.+...
T Consensus 10 ~~~~~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~-------------------------------- 57 (388)
T 3pe7_A 10 TFDTYQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFD-------------------------------- 57 (388)
T ss_dssp CCEEEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTT--------------------------------
T ss_pred cceEEecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCC--------------------------------
Confidence 367887666677889998665431111133489999999999986421
Q ss_pred ccCCchhhhhhhhcccceEEEEcc-CCCceecCCC-c-eEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecC
Q 005240 141 LLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-A-VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD 217 (706)
Q Consensus 141 ~~~~~~d~~~~~~~~~~~l~~~~l-~g~~~~lt~~-~-~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 217 (706)
+..+||++++ +|+.++++.. . ....+.|||||++|+|.... ..|++|+++
T Consensus 58 --------------g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~-------------~~l~~~d~~ 110 (388)
T 3pe7_A 58 --------------GPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDG-------------RNLMRVDLA 110 (388)
T ss_dssp --------------SSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETT-------------TEEEEEETT
T ss_pred --------------CCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCC-------------CeEEEEECC
Confidence 1258999999 4588888876 2 23367899999999998854 379999999
Q ss_pred CCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCC-C---------ccccCccceeeeecCCCCC
Q 005240 218 GKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGD-A---------NVEVSPRDIIYTQPAEPAE 287 (706)
Q Consensus 218 ~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~-~---------~~~~~~~~~l~~~d~~~~~ 287 (706)
+++.+.+...+.... ....+.++|||+. |+.+....... . .........|+++|+ +
T Consensus 111 ~g~~~~~~~~~~~~~----------~~~~~~~~~dg~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~---~ 176 (388)
T 3pe7_A 111 TLEENVVYQVPAEWV----------GYGTWVANSDCTK-LVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDL---K 176 (388)
T ss_dssp TCCEEEEEECCTTEE----------EEEEEEECTTSSE-EEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEET---T
T ss_pred CCcceeeeechhhcc----------cccceeECCCCCe-eccccccCcccccccccchhhhhhccCCcceEEEEEC---C
Confidence 888777765432100 0012234899987 55432211100 0 000112357999999 7
Q ss_pred CCCceEEeecccccccceecC-CCceEEEEeecc--ccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCC
Q 005240 288 GEKPEILHKLDLRFRSVSWCD-DSLALVNETWYK--TSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTG 364 (706)
Q Consensus 288 ~~~~~~l~~~~~~~~~~~wsp-Dg~~l~~~~~~~--~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg 364 (706)
+++.+.++.....+..+.||| ||+.|+|..... ....+||.+|++++ +.+.++...... ....+.|||||
T Consensus 177 ~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~--~~~~l~~~~~~~-----~~~~~~~spdg 249 (388)
T 3pe7_A 177 TGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGT--NMRKVKTHAEGE-----SCTHEFWVPDG 249 (388)
T ss_dssp TCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSC--CCEESCCCCTTE-----EEEEEEECTTS
T ss_pred CCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCC--ceEEeeeCCCCc-----ccccceECCCC
Confidence 888888887777788999999 999999876432 12457999999873 456664432100 01236799999
Q ss_pred CEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeeecccchhhhhhhhhhccCCCceecccCCCEEEEE
Q 005240 365 TNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTS 444 (706)
Q Consensus 365 ~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~ 444 (706)
++|++..... + .....|+++|+++|+.+.+....+. ...........|||||++|+++
T Consensus 250 ~~l~~~~~~~------------~----~~~~~l~~~d~~~g~~~~l~~~~~~------~~~~~~~~~~~~spdg~~l~~~ 307 (388)
T 3pe7_A 250 SALVYVSYLK------------G----SPDRFIYSADPETLENRQLTSMPAC------SHLMSNYDGSLMVGDGSDAPVD 307 (388)
T ss_dssp SCEEEEEEET------------T----CCCEEEEEECTTTCCEEEEEEECCE------EEEEECTTSSEEEEEECCC---
T ss_pred CEEEEEecCC------------C----CCcceEEEEecCCCceEEEEcCCCc------eeeeecCCCCeEccCCCcceeE
Confidence 9998876431 0 1112488999999988777654320 0000001124799999999987
Q ss_pred Eec-----CCCCcEEEEEECCCCceeEeecCCC
Q 005240 445 KES-----KTEITQYHILSWPLKKSSQITNFPH 472 (706)
Q Consensus 445 ~~~-----~~~p~~v~~~~~~~~~~~~lt~~~~ 472 (706)
... ......|+++|+.+++.++|+....
T Consensus 308 ~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~ 340 (388)
T 3pe7_A 308 VQDDSGYKIENDPFLYVFNMKNGTQHRVARHDT 340 (388)
T ss_dssp ---------CCCCEEEEEETTTTEEEEEEECCC
T ss_pred eeeccccccCCCCEEEEEeccCCceEEeccccC
Confidence 543 2566789999999999999987543
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.86 E-value=8.3e-20 Score=190.66 Aligned_cols=309 Identities=13% Similarity=0.105 Sum_probs=196.4
Q ss_pred CCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCC
Q 005240 29 DGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSS 108 (706)
Q Consensus 29 ~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~ 108 (706)
....+..|+| ||++|||+....+... .....+||++++++++.+++ . .+..+.|||||++|+|.+...
T Consensus 13 ~~~~~~~~~~--dG~~i~~~~~~~~~~~-~~~~~~l~~~d~~~~~~~~l----~-----~~~~~~~SpDg~~la~~~~~~ 80 (347)
T 2gop_A 13 KFAYLSDPRT--KGELVAYVLTKANLKD-NKYENTIVIENLKNNARRFI----E-----NATMPRISPDGKKIAFMRANE 80 (347)
T ss_dssp CSCEEEEEEE--ETTEEEEEEEEEETTT-TEEEEEEEEEETTTCCEEEE----E-----SCEEEEECTTSSEEEEEEEET
T ss_pred eeEEcccceE--CCcEEEEEEeecCccc-CCccceEEEEeCCCCceEEc----c-----cCCCeEECCCCCEEEEEEecc
Confidence 3345778899 9999999876322111 13467899999999998887 1 167889999999999986421
Q ss_pred CCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccC-CCceecCCCceEeeeeeCCCCc
Q 005240 109 RRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD-GTAKDFGTPAVYTAVEPSPDQK 187 (706)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~-g~~~~lt~~~~~~~~~~SpDG~ 187 (706)
.. ...+||+++++ |+.++++....+..++|||||+
T Consensus 81 ~~--------------------------------------------~~~~l~~~~~~~g~~~~l~~~~~~~~~~wspdg~ 116 (347)
T 2gop_A 81 EK--------------------------------------------KVSEIWVADLETLSSKKILEAKNIRSLEWNEDSR 116 (347)
T ss_dssp TT--------------------------------------------TEEEEEEEETTTTEEEEEEEESEEEEEEECTTSS
T ss_pred CC--------------------------------------------CcceEEEEECCCCceEEEEcCCCccceeECCCCC
Confidence 00 12689999995 4777777652288999999999
Q ss_pred EEEEEeeccCcc--cc----cccc--------cccceEEEEecCCCee-EEcccCCCCCCCCcccCccCCCCcceeeecC
Q 005240 188 YVLITSMHRPYS--YK----VPCA--------RFSQKVQVWTTDGKLV-RELCDLPPAEDIPVCYNSVREGMRSISWRAD 252 (706)
Q Consensus 188 ~i~~~~~~~~~~--~~----~~~~--------~~~~~i~~~~~~~~~~-~~l~~~~~~~~~p~~~~~~~~g~~~~~~spd 252 (706)
+|+|.+...... .. .++. ....+|+++++++++. +.++. + . ...+.||||
T Consensus 117 ~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~-------------~~~~~~spd 181 (347)
T 2gop_A 117 KLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-R-------------FSSGIWHRD 181 (347)
T ss_dssp EEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-T-------------TCEEEEETT
T ss_pred EEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-C-------------cccccCCCC
Confidence 999987541100 00 0000 0135799999998877 77765 2 1 236799999
Q ss_pred CCceEEEEEeccCCCCccccCc-cceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccc----cceEEE
Q 005240 253 KPSTLYWVEAQDRGDANVEVSP-RDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKT----SQTRTW 327 (706)
Q Consensus 253 g~~~l~~~~~~~~~~~~~~~~~-~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~----~~~~l~ 327 (706)
| ++++...+.... ... ...||.+| +++.+.|+.. .... .+||||+.|++.+.... ...+||
T Consensus 182 g---~~~~~~~~~~~~---~~~~~~~l~~~d-----~~~~~~l~~~-~~~~--~~spdg~~l~~~~~~~~~~~~~~~~l~ 247 (347)
T 2gop_A 182 K---IVVNVPHREIIP---QYFKFWDIYIWE-----DGKEEKMFEK-VSFY--AVDSDGERILLYGKPEKKYMSEHNKLY 247 (347)
T ss_dssp E---EEEEEECCCSSC---CSSCCEEEEEEE-----TTEEEEEEEE-ESEE--EEEECSSCEEEEECCSSSCCCSSCEEE
T ss_pred e---EEEEEecccccc---cccccccEEEeC-----CCceEEeccC-ccee--eECCCCCEEEEEEccccCCccccceEE
Confidence 9 455543322100 001 23577775 3566777655 4333 34999999998764331 246899
Q ss_pred EEcCCCCCCCceeeecCcccccccCCCCCc-eEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCc
Q 005240 328 LVCPGSKDVAPRVLFDRVFENVYSDPGSPM-MTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGS 406 (706)
Q Consensus 328 ~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~ 406 (706)
++| + ++.+.++...-.. ... +.|+ || +++.... .....|| ++ +|+
T Consensus 248 ~~d--~--~~~~~l~~~~~~~------~~~~~~~s-dg--~~~~~~~------------------~~~~~l~-~~--~g~ 293 (347)
T 2gop_A 248 IYD--G--KEVMGILDEVDRG------VGQAKIKD-GK--VYFTLFE------------------EGSVNLY-IW--DGE 293 (347)
T ss_dssp EEC--S--SCEEESSTTCCSE------EEEEEEET-TE--EEEEEEE------------------TTEEEEE-EE--SSS
T ss_pred EEC--C--CceEeccccCCcc------cCCccEEc-Cc--EEEEEec------------------CCcEEEE-Ec--CCc
Confidence 999 4 3445554321111 111 5678 87 5555432 1233577 77 466
Q ss_pred eeeeecccchhhhhhhhhhccCCCceecccCCCEEEEEEecCCCCcEEEEEECCCCceeEeecCCCCC
Q 005240 407 KERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPY 474 (706)
Q Consensus 407 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~p~~v~~~~~~~~~~~~lt~~~~~~ 474 (706)
.+++...++. ...++|++ .++++.++...|++||.++ ++.++|+..|..+
T Consensus 294 ~~~~~~~~~~------------v~~~~~s~---~~~~~~~~~~~~~~l~~~~---g~~~~lt~~n~~~ 343 (347)
T 2gop_A 294 IKPIAKGRHW------------IMGFDVDE---IVVYLKETATRLRELFTWD---GEEKQLTDYNDPI 343 (347)
T ss_dssp EEEEECSSSE------------EEEEEESS---SEEEEEECSSSCCEEEEES---SSEEECCCTTSTT
T ss_pred eEEEecCCCe------------EEeeeeeC---cEEEEEcCCCChHHheEeC---CcEEEeccccHhH
Confidence 6666543221 12357777 5888889999999999997 7788999887654
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.2e-19 Score=180.83 Aligned_cols=262 Identities=12% Similarity=0.043 Sum_probs=182.8
Q ss_pred ccceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCC-CceeecccCCC
Q 005240 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAET-GEAKPLFESPD 82 (706)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~-g~~~~lt~~~~ 82 (706)
...|++.++.. ++.+++.... ..+..++|||||++|++.. ...|+++|+++ ++.+++.....
T Consensus 21 ~~~i~~~d~~~----~~~~~~~~~~--~~v~~~~~spdg~~l~~~~-----------~~~i~~~d~~~~~~~~~~~~~~~ 83 (297)
T 2ojh_A 21 RSSIEIFNIRT----RKMRVVWQTP--ELFEAPNWSPDGKYLLLNS-----------EGLLYRLSLAGDPSPEKVDTGFA 83 (297)
T ss_dssp CEEEEEEETTT----TEEEEEEEES--SCCEEEEECTTSSEEEEEE-----------TTEEEEEESSSCCSCEECCCTTC
T ss_pred ceeEEEEeCCC----CceeeeccCC--cceEeeEECCCCCEEEEEc-----------CCeEEEEeCCCCCCceEeccccc
Confidence 35689999977 8777776433 3488999999999999964 24899999999 88888764332
Q ss_pred ccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEE
Q 005240 83 ICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLG 162 (706)
Q Consensus 83 ~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~ 162 (706)
...+..+.|||||++|++...... ....||.+
T Consensus 84 ---~~~~~~~~~spdg~~l~~~~~~~~---------------------------------------------~~~~l~~~ 115 (297)
T 2ojh_A 84 ---TICNNDHGISPDGALYAISDKVEF---------------------------------------------GKSAIYLL 115 (297)
T ss_dssp ---CCBCSCCEECTTSSEEEEEECTTT---------------------------------------------SSCEEEEE
T ss_pred ---cccccceEECCCCCEEEEEEeCCC---------------------------------------------CcceEEEE
Confidence 112668999999999998753211 12689999
Q ss_pred ccC-CCceecCCCceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccC
Q 005240 163 SLD-GTAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVR 241 (706)
Q Consensus 163 ~l~-g~~~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~ 241 (706)
++. ++.+.+........++|||||++|+|+..... ...|+.+++++++.+.+.....
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~----------~~~l~~~~~~~~~~~~~~~~~~------------ 173 (297)
T 2ojh_A 116 PSTGGTPRLMTKNLPSYWHGWSPDGKSFTYCGIRDQ----------VFDIYSMDIDSGVETRLTHGEG------------ 173 (297)
T ss_dssp ETTCCCCEECCSSSSEEEEEECTTSSEEEEEEEETT----------EEEEEEEETTTCCEEECCCSSS------------
T ss_pred ECCCCceEEeecCCCccceEECCCCCEEEEEECCCC----------ceEEEEEECCCCcceEcccCCC------------
Confidence 985 47777776655778899999999998776532 2367777777777776655431
Q ss_pred CCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccc
Q 005240 242 EGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKT 321 (706)
Q Consensus 242 ~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~ 321 (706)
....+.|+|||+. |++....++ ...||.++. .++..+.+......+..+.|+|||+.|++.+....
T Consensus 174 -~~~~~~~s~dg~~-l~~~~~~~~---------~~~i~~~~~---~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~ 239 (297)
T 2ojh_A 174 -RNDGPDYSPDGRW-IYFNSSRTG---------QMQIWRVRV---DGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDAD 239 (297)
T ss_dssp -CEEEEEECTTSSE-EEEEECTTS---------SCEEEEEET---TSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETT
T ss_pred -ccccceECCCCCE-EEEEecCCC---------CccEEEECC---CCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCC
Confidence 1347899999997 766543221 124777776 56677777766677788999999999998764422
Q ss_pred -------cceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEeee
Q 005240 322 -------SQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIK 372 (706)
Q Consensus 322 -------~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 372 (706)
....|+++|++++ +...+...... ......+.|+|||++|++...
T Consensus 240 ~~~~~~~~~~~l~~~d~~~~--~~~~~~~~~~~----~~~~~~~~~spdg~~l~~~~~ 291 (297)
T 2ojh_A 240 VFDHPRDLDVRVQLMDMDGG--NVETLFDLFGG----QGTMNSPNWSPDGDEFAYVRY 291 (297)
T ss_dssp CCSCCSSEEEEEEEEETTSC--SCEEEEEEEES----TTTSCSCCBCTTSSEEEEEEE
T ss_pred CCcccccCceEEEEEecCCC--CceeeeccCCC----CcccccceECCCCCEEEEEEe
Confidence 2367999999884 34444321000 001223678999999988764
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=6.3e-20 Score=211.49 Aligned_cols=331 Identities=10% Similarity=-0.006 Sum_probs=198.9
Q ss_pred ccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCC
Q 005240 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDP 112 (706)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~ 112 (706)
...++|||||+ +++.. ...+||++|+++++.++++...... ...+..++|||||++|+|.+.....-
T Consensus 18 ~~~~~~s~dg~-~~~~~----------~d~~i~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~SpDg~~la~~~~~~~~~- 84 (719)
T 1z68_A 18 TFFPNWISGQE-YLHQS----------ADNNIVLYNIETGQSYTILSNRTMK-SVNASNYGLSPDRQFVYLESDYSKLW- 84 (719)
T ss_dssp CCCCEESSSSE-EEEEC----------TTSCEEEEESSSCCEEEEECHHHHH-TTTCSEEEECTTSSEEEEEEEEEECS-
T ss_pred CCccEECCCCe-EEEEc----------CCCCEEEEEcCCCcEEEEEcccccc-ccceeeEEECCCCCeEEEEecCceeE-
Confidence 34789999995 44542 2358999999999998887432110 00156899999999999975421000
Q ss_pred CCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccC-CCc---eecCCCceEeeeeeCCCCcE
Q 005240 113 PKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD-GTA---KDFGTPAVYTAVEPSPDQKY 188 (706)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~-g~~---~~lt~~~~~~~~~~SpDG~~ 188 (706)
.+....+|++++++ |+. ++++ ..+..++|||||++
T Consensus 85 ---------------------------------------~~s~~~~i~~~d~~~g~~~~~~~l~--~~~~~~~~SPDG~~ 123 (719)
T 1z68_A 85 ---------------------------------------RYSYTATYYIYDLSNGEFVRGNELP--RPIQYLCWSPVGSK 123 (719)
T ss_dssp ---------------------------------------SSCEEEEEEEEETTTTEECCSSCCC--SSBCCEEECSSTTC
T ss_pred ---------------------------------------EeecceEEEEEECCCCccccceecC--cccccceECCCCCE
Confidence 00023689999994 565 5554 34678999999999
Q ss_pred EEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCC----CCCcccCcc--CCCCcceeeecCCCceEEEEEe
Q 005240 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAE----DIPVCYNSV--REGMRSISWRADKPSTLYWVEA 262 (706)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~----~~p~~~~~~--~~g~~~~~~spdg~~~l~~~~~ 262 (706)
|+|... .+|++|++.+++.++++...... ..+.++... ......++|||||+. |++...
T Consensus 124 la~~~~--------------~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~-la~~~~ 188 (719)
T 1z68_A 124 LAYVYQ--------------NNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKF-LAYAEF 188 (719)
T ss_dssp EEEEET--------------TEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSE-EEEEEE
T ss_pred EEEEEC--------------CeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCE-EEEEEE
Confidence 999852 37999999988877776432111 000000000 001136899999998 887754
Q ss_pred ccCCCCcc----------------------ccCccceeeeecCCCCCCCCce---EEe------ecccccccceecCCCc
Q 005240 263 QDRGDANV----------------------EVSPRDIIYTQPAEPAEGEKPE---ILH------KLDLRFRSVSWCDDSL 311 (706)
Q Consensus 263 ~~~~~~~~----------------------~~~~~~~l~~~d~~~~~~~~~~---~l~------~~~~~~~~~~wspDg~ 311 (706)
.+...... .......|+++|+ ++++.. ++. .....+..+.||||++
T Consensus 189 d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~ 265 (719)
T 1z68_A 189 NDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDT---TYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDER 265 (719)
T ss_dssp ECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEES---SCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSE
T ss_pred CCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEEC---CCCCccceeEccCCccCCCCcceEEEeEEeCCCe
Confidence 32211100 0012236889998 555542 332 2345678899999987
Q ss_pred eEEEEeeccccceEEEEEc----CCCCCCCceeee----cCcccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEE
Q 005240 312 ALVNETWYKTSQTRTWLVC----PGSKDVAPRVLF----DRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILL 383 (706)
Q Consensus 312 ~l~~~~~~~~~~~~l~~~d----~~~~~~~~~~l~----~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~ 383 (706)
.++...+......+||++| ++++ +.+.++ +..-..+... ....+.|||||+.|++.....
T Consensus 266 ~~~~~~~~~~~~~~l~~~d~~~~~~~g--~~~~~~~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~--------- 333 (719)
T 1z68_A 266 VCLQWLKRVQNVSVLSICDFREDWQTW--DCPKTQEHIEESRTGWAGGF-FVSTPVFSYDAISYYKIFSDK--------- 333 (719)
T ss_dssp EEEEEEESSTTEEEEEEEEECSSSSSE--ECCGGGEEEEECSSSCSSSS-SCCCCEECTTSSCEEEEEECT---------
T ss_pred EEEEEeccccCeEEEEEEcccCCCCCC--ceEEEEecccccCCceEccc-cCCccEECCCCCeEEEEEEcc---------
Confidence 5554333344556899999 7774 344443 1211111100 001367999999887753221
Q ss_pred ecCCCCCCCCCCceeeeecCCCceeeeecccchhhhhhhhhhccCCCceecccCCCEEEEEEec---CCCCcEEEEEECC
Q 005240 384 NGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKES---KTEITQYHILSWP 460 (706)
Q Consensus 384 ~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~---~~~p~~v~~~~~~ 460 (706)
....+|+++|+++++.+.|+..... ...+.++ |+++|+|+... ......+|.+++.
T Consensus 334 --------~g~~~l~~~~~~~~~~~~lt~~~~~------------v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~ 392 (719)
T 1z68_A 334 --------DGYKHIHYIKDTVENAIQITSGKWE------------AINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIG 392 (719)
T ss_dssp --------TSCEEEEEESSCSTTCEECSCSSSC------------EEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECS
T ss_pred --------CCceEEEEEECCCCceEecccCceE------------EEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCC
Confidence 1234688899888876666543221 1124556 99999998765 1344568888876
Q ss_pred CC--ceeEee
Q 005240 461 LK--KSSQIT 468 (706)
Q Consensus 461 ~~--~~~~lt 468 (706)
++ +.+.|+
T Consensus 393 ~g~~~~~~l~ 402 (719)
T 1z68_A 393 SYPPSKKCVT 402 (719)
T ss_dssp SSSCCEEESS
T ss_pred CCCCCceecc
Confidence 65 345555
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.6e-18 Score=197.62 Aligned_cols=312 Identities=14% Similarity=0.161 Sum_probs=192.9
Q ss_pred cceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCC-----Cceeeccc
Q 005240 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAET-----GEAKPLFE 79 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~-----g~~~~lt~ 79 (706)
..|++.++.. ++.++++... ..+..++|||||++|||+.+ .+||++++++ ++.++++.
T Consensus 101 ~~i~~~d~~~----~~~~~l~~~~--~~~~~~~~SpdG~~la~~~~-----------~~i~v~~~~~~~~~~g~~~~~~~ 163 (706)
T 2z3z_A 101 GGLVGFDMLA----RKVTYLFDTN--EETASLDFSPVGDRVAYVRN-----------HNLYIARGGKLGEGMSRAIAVTI 163 (706)
T ss_dssp TEEEEEETTT----TEEEEEECCT--TCCTTCEECTTSSEEEEEET-----------TEEEEEECBCTTSCCCCCEESCS
T ss_pred CEEEEEECCC----CceEEccCCc--ccccCCcCCCCCCEEEEEEC-----------CeEEEEecCcccccCCCcEEecc
Confidence 3688899876 8877776432 34889999999999999642 5899999999 99888876
Q ss_pred CCCccccc----------cccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhh
Q 005240 80 SPDICLNA----------VFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDES 149 (706)
Q Consensus 80 ~~~~~~~~----------~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 149 (706)
.....+.. .+..+.|||||++|++.+.+...... ... ........... ...|...+.
T Consensus 164 ~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~-~~~------~~~~~~~~~~~------~~~y~~~g~ 230 (706)
T 2z3z_A 164 DGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKP-TPI------VDYHPLEAESK------PLYYPMAGT 230 (706)
T ss_dssp CCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCC-EEE------EECCSSSCEEE------EECCCBTTS
T ss_pred CCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCce-EEe------eccCCCCCceE------EeeCCCCCC
Confidence 54321100 03688999999999998632221100 000 00000000000 001111110
Q ss_pred hhhhcccceEEEEccC-CCceecCCC----ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCC-eeEE
Q 005240 150 LFDYYTTAQLVLGSLD-GTAKDFGTP----AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK-LVRE 223 (706)
Q Consensus 150 ~~~~~~~~~l~~~~l~-g~~~~lt~~----~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~ 223 (706)
.....+|+++|++ |+.+.+... ..+..++|||||++|++........ ...|++||+.++ ..+.
T Consensus 231 ---~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~--------~~~v~~~d~~~g~~~~~ 299 (706)
T 2z3z_A 231 ---PSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQN--------ECKVNAYDAETGRFVRT 299 (706)
T ss_dssp ---CCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSC--------EEEEEEEETTTCCEEEE
T ss_pred ---CCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCC--------eeEEEEEECCCCceeeE
Confidence 0133689999994 466666532 4678999999999999877553211 358999999977 6666
Q ss_pred cccCCCCCCCCcccCccCCCCcceeeec--CCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeeccccc
Q 005240 224 LCDLPPAEDIPVCYNSVREGMRSISWRA--DKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRF 301 (706)
Q Consensus 224 l~~~~~~~~~p~~~~~~~~g~~~~~~sp--dg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~ 301 (706)
+....... +. .....+.||| ||+. | +....++ ...||.++. +++..+.|+.....+
T Consensus 300 ~~~~~~~~----~~----~~~~~~~~sp~~dg~~-l-~~~~~~g---------~~~l~~~~~---~~~~~~~l~~~~~~v 357 (706)
T 2z3z_A 300 LFVETDKH----YV----EPLHPLTFLPGSNNQF-I-WQSRRDG---------WNHLYLYDT---TGRLIRQVTKGEWEV 357 (706)
T ss_dssp EEEEECSS----CC----CCCSCCEECTTCSSEE-E-EEECTTS---------SCEEEEEET---TSCEEEECCCSSSCE
T ss_pred EEEccCCC----eE----CccCCceeecCCCCEE-E-EEEccCC---------ccEEEEEEC---CCCEEEecCCCCeEE
Confidence 54321110 00 0013569999 9973 4 4433321 124888876 566677777666656
Q ss_pred cc-ceecCCCceEEEEeeccc-cceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEeeeccCCcce
Q 005240 302 RS-VSWCDDSLALVNETWYKT-SQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQI 379 (706)
Q Consensus 302 ~~-~~wspDg~~l~~~~~~~~-~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~ 379 (706)
.. +.|+|||+.|++.....+ ...+||.+|++++ +.+.+.... +...++|||||++|++.....
T Consensus 358 ~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~--~~~~l~~~~--------~~~~~~~spdg~~l~~~~~~~----- 422 (706)
T 2z3z_A 358 TNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGG--KTKDLTPES--------GMHRTQLSPDGSAIIDIFQSP----- 422 (706)
T ss_dssp EEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCC--CCEESCCSS--------SEEEEEECTTSSEEEEEEECS-----
T ss_pred EeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCC--CceeccCCC--------ceEEEEECCCCCEEEEEecCC-----
Confidence 55 799999999998764432 2468999999884 345553211 223478999999998875321
Q ss_pred EEEEecCCCCCCCCCCceeeeecCCCc
Q 005240 380 YILLNGRGFTPEGNIPFLDLFDINTGS 406 (706)
Q Consensus 380 ~~~~~~~g~~~~~~~~~l~~~d~~~g~ 406 (706)
.....++++|+++++
T Consensus 423 ------------~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 423 ------------TVPRKVTVTNIGKGS 437 (706)
T ss_dssp ------------SCSCEEEEEESSSCE
T ss_pred ------------CCCcEEEEEECCCCe
Confidence 112347788888776
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.81 E-value=3e-18 Score=182.01 Aligned_cols=293 Identities=11% Similarity=0.050 Sum_probs=186.8
Q ss_pred eEEEEEcCCC-ceeecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhc
Q 005240 63 RVWIADAETG-EAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNL 141 (706)
Q Consensus 63 ~l~~~d~~~g-~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (706)
..|+ |..+| ..++|+..........+..++|||||++|+|.....
T Consensus 12 ~~~~-d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~--------------------------------- 57 (396)
T 3c5m_A 12 ETFV-DSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFD--------------------------------- 57 (396)
T ss_dssp EEEE-CTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTT---------------------------------
T ss_pred heee-cCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecC---------------------------------
Confidence 4454 55554 567787543321111256789999999999985421
Q ss_pred cCCchhhhhhhhcccceEEEEccC-CCceecCCC-ceE-eeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCC
Q 005240 142 LKDEYDESLFDYYTTAQLVLGSLD-GTAKDFGTP-AVY-TAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG 218 (706)
Q Consensus 142 ~~~~~d~~~~~~~~~~~l~~~~l~-g~~~~lt~~-~~~-~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 218 (706)
...+||+++++ |+.++++.. ... ..+.|||||++|+|.+.. .+|+++++++
T Consensus 58 -------------g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~-------------~~l~~~d~~~ 111 (396)
T 3c5m_A 58 -------------GNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNE-------------LNLMKVDLET 111 (396)
T ss_dssp -------------SSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETT-------------TEEEEEETTT
T ss_pred -------------CCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcC-------------CcEEEEECCC
Confidence 12579999995 477788766 332 338899999999998764 2799999998
Q ss_pred CeeEEcccCCCCCCCCcccCccCCCC---------------cceeeecCCCceEEEEEeccCCCCccccCccceeeeecC
Q 005240 219 KLVRELCDLPPAEDIPVCYNSVREGM---------------RSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPA 283 (706)
Q Consensus 219 ~~~~~l~~~~~~~~~p~~~~~~~~g~---------------~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~ 283 (706)
++.+.++..... +++ .|. ....|+||++. +++..... ......|+++|+
T Consensus 112 ~~~~~~~~~~~~-----~~~---~g~~l~~~~~~~~~~~~~~~~~~spdg~~-~~~~~~~~-------~~~~~~l~~~d~ 175 (396)
T 3c5m_A 112 LEEQVIYTVDEE-----WKG---YGTWVANSDCTKLVGIEILKRDWQPLTSW-EKFAEFYH-------TNPTCRLIKVDI 175 (396)
T ss_dssp CCEEEEEECCTT-----EEE---EEEEEECTTSSEEEEEEEEGGGCCCCCSH-HHHHHHHH-------TCCCEEEEEEET
T ss_pred CCcEEEEecccc-----cCC---CCCEEEeccCCccccccccccccCCCCcc-eeeeeecc-------CCCcceEEEEEC
Confidence 888877764321 000 000 01356777665 33221000 012336999998
Q ss_pred CCCCCCCceEEeecccccccceecC-CCceEEEEeeccc--cceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEe
Q 005240 284 EPAEGEKPEILHKLDLRFRSVSWCD-DSLALVNETWYKT--SQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTR 360 (706)
Q Consensus 284 ~~~~~~~~~~l~~~~~~~~~~~wsp-Dg~~l~~~~~~~~--~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 360 (706)
++++.+.+......+..+.|+| ||+.|++.+.... ...+||+++++++ +.+.+....... ....+.|
T Consensus 176 ---~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~--~~~~l~~~~~~~-----~~~~~~~ 245 (396)
T 3c5m_A 176 ---ETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGS--NVRKIKEHAEGE-----SCTHEFW 245 (396)
T ss_dssp ---TTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSC--CCEESSCCCTTE-----EEEEEEE
T ss_pred ---CCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCC--ceeEeeccCCCc-----cccceEE
Confidence 7788888887777788999999 8998988764211 1157999999873 445554311000 0123679
Q ss_pred ccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeeecccchhhhhhhhhhccCCCceeccc-CCC
Q 005240 361 TSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINL-NQL 439 (706)
Q Consensus 361 s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~-Dg~ 439 (706)
||||++|++..... + .....|+++|+++|+.+.+...++ . .+.||| ||+
T Consensus 246 spdg~~l~~~~~~~------------~----~~~~~l~~~d~~~g~~~~l~~~~~-------------~-~~~~s~~dg~ 295 (396)
T 3c5m_A 246 IPDGSAMAYVSYFK------------G----QTDRVIYKANPETLENEEVMVMPP-------------C-SHLMSNFDGS 295 (396)
T ss_dssp CTTSSCEEEEEEET------------T----TCCEEEEEECTTTCCEEEEEECCS-------------E-EEEEECSSSS
T ss_pred CCCCCEEEEEecCC------------C----CccceEEEEECCCCCeEEeeeCCC-------------C-CCCccCCCCc
Confidence 99999988875321 0 011238889998888777654321 1 168999 999
Q ss_pred EEEEEEec------------CCCCcEEEEEECCCCceeEeecCC
Q 005240 440 KILTSKES------------KTEITQYHILSWPLKKSSQITNFP 471 (706)
Q Consensus 440 ~l~~~~~~------------~~~p~~v~~~~~~~~~~~~lt~~~ 471 (706)
.+++.... ......||++|+.+++.++|+..+
T Consensus 296 ~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~ 339 (396)
T 3c5m_A 296 LMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHS 339 (396)
T ss_dssp EEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECC
T ss_pred eEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCC
Confidence 77765432 112378999999999888888654
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.3e-17 Score=199.81 Aligned_cols=238 Identities=10% Similarity=-0.002 Sum_probs=168.6
Q ss_pred CCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCc------cccccccce
Q 005240 19 GPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI------CLNAVFGSF 92 (706)
Q Consensus 19 g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~------~~~~~~~~~ 92 (706)
+..++++.. .....+.|||||++|||.. ...||++++++++...+...... .....+..+
T Consensus 236 ~~~~~l~~~---~~~~~~~~SpDG~~la~~~-----------~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~ 301 (1045)
T 1k32_A 236 KDLRKHTSF---TDYYPRHLNTDGRRILFSK-----------GGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAE 301 (1045)
T ss_dssp CSCEECCCC---CSSCEEEEEESSSCEEEEE-----------TTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEE
T ss_pred CcceEecCC---CCcceeeEcCCCCEEEEEe-----------CCEEEEecCCceEeeeeccCccccccccccccccccee
Confidence 666777632 2356789999999999964 25899999866665544321100 001136789
Q ss_pred EEe-cCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccC-CCcee
Q 005240 93 VWV-NNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD-GTAKD 170 (706)
Q Consensus 93 ~wS-pDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~-g~~~~ 170 (706)
.|| |||++|++.+. ..|+++++. ++.+.
T Consensus 302 ~~S~pdG~~la~~~~--------------------------------------------------~~i~~~~~~~~~~~~ 331 (1045)
T 1k32_A 302 DFSPLDGDLIAFVSR--------------------------------------------------GQAFIQDVSGTYVLK 331 (1045)
T ss_dssp EEEECGGGCEEEEET--------------------------------------------------TEEEEECTTSSBEEE
T ss_pred eecCCCCCEEEEEEc--------------------------------------------------CEEEEEcCCCCceEE
Confidence 999 99999998741 578999984 46677
Q ss_pred cCCC-c-eEeeeeeCCCCcEEEEEeeccCcccccccccccceEE-EEecCCCeeEEcccCCCCCCCCcccCccCCCCcce
Q 005240 171 FGTP-A-VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQ-VWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSI 247 (706)
Q Consensus 171 lt~~-~-~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~ 247 (706)
++.. . .+..++|| ||++|++.+.. ..++ +|++++++.+.++... .....+
T Consensus 332 ~~~~~~~~~~~~~~s-dg~~l~~~s~~-------------~~l~~~~d~~~~~~~~l~~~~-------------~~~~~~ 384 (1045)
T 1k32_A 332 VPEPLRIRYVRRGGD-TKVAFIHGTRE-------------GDFLGIYDYRTGKAEKFEENL-------------GNVFAM 384 (1045)
T ss_dssp CSCCSCEEEEEECSS-SEEEEEEEETT-------------EEEEEEEETTTCCEEECCCCC-------------CSEEEE
T ss_pred ccCCCcceEEeeeEc-CCCeEEEEECC-------------CceEEEEECCCCCceEecCCc-------------cceeee
Confidence 7655 4 78899999 99999988752 3789 9999988888776221 113477
Q ss_pred eeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEe-ecccccccceecCCCceEEEEeecc------
Q 005240 248 SWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH-KLDLRFRSVSWCDDSLALVNETWYK------ 320 (706)
Q Consensus 248 ~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~-~~~~~~~~~~wspDg~~l~~~~~~~------ 320 (706)
+|||||+. |++... ...|+++|+ ++++.+.+. .....+..++|||||++|++.....
T Consensus 385 ~~SpDG~~-la~~~~------------~~~v~~~d~---~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~ 448 (1045)
T 1k32_A 385 GVDRNGKF-AVVAND------------RFEIMTVDL---ETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDG 448 (1045)
T ss_dssp EECTTSSE-EEEEET------------TSEEEEEET---TTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCS
T ss_pred EECCCCCE-EEEECC------------CCeEEEEEC---CCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccC
Confidence 99999998 776532 125899999 778887776 4566778999999999999876432
Q ss_pred ccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEeee
Q 005240 321 TSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIK 372 (706)
Q Consensus 321 ~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 372 (706)
.....|+++|++++ +...++.... ....+.|+|||++|++...
T Consensus 449 ~~~~~i~l~d~~~g--~~~~l~~~~~-------~~~~~~~spdG~~l~~~s~ 491 (1045)
T 1k32_A 449 YVMQAIHVYDMEGR--KIFAATTENS-------HDYAPAFDADSKNLYYLSY 491 (1045)
T ss_dssp CCEEEEEEEETTTT--EEEECSCSSS-------BEEEEEECTTSCEEEEEES
T ss_pred CCCCeEEEEECCCC--cEEEeeCCCc-------ccCCceEcCCCCEEEEEec
Confidence 23467999999884 3445433221 1123779999999998764
|
| >3ebl_A Gibberellin receptor GID1; alpha/beta hydrolase, lipase, gibberellin signaling pathway, hydrolase, nucleus, hydrolase receptor; HET: GA4; 1.90A {Oryza sativa subsp} PDB: 3ed1_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.4e-18 Score=182.13 Aligned_cols=203 Identities=14% Similarity=0.129 Sum_probs=146.5
Q ss_pred CCCceEEEEEEccCCeEEEEEEEe-cCCCC------------------CCCCCCceEEEEEcCCCCCCcCcCCcccCCCC
Q 005240 478 ASLQKEMIKYQRKDGVPLTATLYL-PPGYD------------------QSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPN 538 (706)
Q Consensus 478 ~~~~~~~~~~~~~dg~~i~~~l~~-P~~~~------------------~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~ 538 (706)
..+..+.+.+.+.+| +...+|+ |.... ....+++|+||++|||++..++. .
T Consensus 60 ~~v~~~dv~~~~~~g--l~~~~~~~P~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Pvvv~~HGGg~~~g~~--------~ 129 (365)
T 3ebl_A 60 EGVSSFDHIIDQSVG--LEVRIYRAAAEGDAEEGAAAVTRPILEFLTDAPAAEPFPVIIFFHGGSFVHSSA--------S 129 (365)
T ss_dssp TTEEEEEEEEETTTT--EEEEEEEEC----------------CGGGGSCCBSSCCEEEEEECCSTTTSCCT--------T
T ss_pred CCCceeeEEecCCCC--ceEEEEeCCCccccccccccccccccccccCCCCCCcceEEEEEcCCccccCCC--------c
Confidence 457889999999888 7777887 87531 11234689999999997532111 0
Q ss_pred CcCCCCchHHHHHHHC-CeEEEEcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcC----CCCCC-cEEEEEechH
Q 005240 539 EFSGMTPTSSLIFLAR-RFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRG----VADPS-RIAVGGHSYG 612 (706)
Q Consensus 539 ~~~~~~~~~~~~l~~~-G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~----~id~~-~i~i~G~S~G 612 (706)
. .....+++.|+++ ||+|+.++++...+.. ....++|+.++++|+.++. .+|++ ||+|+|+|+|
T Consensus 130 ~--~~~~~~~~~la~~~g~~Vv~~dyR~~p~~~--------~~~~~~D~~~a~~~l~~~~~~~~~~d~~~ri~l~G~S~G 199 (365)
T 3ebl_A 130 S--TIYDSLCRRFVKLSKGVVVSVNYRRAPEHR--------YPCAYDDGWTALKWVMSQPFMRSGGDAQARVFLSGDSSG 199 (365)
T ss_dssp B--HHHHHHHHHHHHHHTSEEEEECCCCTTTSC--------TTHHHHHHHHHHHHHHHCTTTEETTTTEEEEEEEEETHH
T ss_pred h--hhHHHHHHHHHHHCCCEEEEeeCCCCCCCC--------CcHHHHHHHHHHHHHHhCchhhhCCCCCCcEEEEeeCcc
Confidence 0 0012345667774 9999999988543321 2345789999999999765 58999 9999999999
Q ss_pred HHHHHHHHHhCCC---ceeEEEeccCCCCCCC------------------------------------------------
Q 005240 613 AFMTAHLLAHAPH---LFCCGIARSGSYNKTL------------------------------------------------ 641 (706)
Q Consensus 613 G~~a~~~~~~~p~---~~~a~v~~~~~~d~~~------------------------------------------------ 641 (706)
|++|+.++.+.++ +++++|+.+|.++...
T Consensus 200 G~la~~~a~~~~~~~~~~~g~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l 279 (365)
T 3ebl_A 200 GNIAHHVAVRAADEGVKVCGNILLNAMFGGTERTESERRLDGKYFVTLQDRDWYWKAYLPEDADRDHPACNPFGPNGRRL 279 (365)
T ss_dssp HHHHHHHHHHHHHTTCCCCEEEEESCCCCCSSCCHHHHHHTTTSSCCHHHHHHHHHHHSCTTCCTTSTTTCTTSTTCCCC
T ss_pred HHHHHHHHHHHHhcCCceeeEEEEccccCCCcCChhhhhcCCCcccCHHHHHHHHHHhCCCCCCCCCcccCCCCCcchhh
Confidence 9999999987655 7999999999875321
Q ss_pred -----CCcc----------chHHHHHHHHHhCCCcEEEEEeCCCCccCC---CcccHHHHHHHHHHHHHHHhccCCC
Q 005240 642 -----TPFG----------FQAERFFDALKGHGALSRLVLLPFEHHVYA---ARENVMHVIWETDRWLQKYCLSNTS 700 (706)
Q Consensus 642 -----~~~~----------~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~---~~~~~~~~~~~~~~f~~~~l~~~~~ 700 (706)
.|.. -+..+++++|++.|+++++++|||++|.|. ......++++.+.+||+++++++.+
T Consensus 280 ~~~~~pP~Li~~G~~D~l~~~~~~~~~~L~~~g~~v~l~~~~g~~H~f~~~~~~~~~~~~~~~i~~Fl~~~~~~~~~ 356 (365)
T 3ebl_A 280 GGLPFAKSLIIVSGLDLTCDRQLAYADALREDGHHVKVVQCENATVGFYLLPNTVHYHEVMEEISDFLNANLYYGSH 356 (365)
T ss_dssp TTSCCCCEEEEEETTSTTHHHHHHHHHHHHHTTCCEEEEEETTCCTTGGGSSCSHHHHHHHHHHHHHHHHHCC----
T ss_pred ccCCCCCEEEEEcCcccchhHHHHHHHHHHHCCCCEEEEEECCCcEEEeccCCCHHHHHHHHHHHHHHHHhhhcccc
Confidence 0000 022389999999999999999999999986 2345678999999999999986553
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.7e-17 Score=168.00 Aligned_cols=271 Identities=14% Similarity=0.142 Sum_probs=183.4
Q ss_pred CCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccc
Q 005240 59 SCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMT 138 (706)
Q Consensus 59 ~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (706)
.....|+++|+.+++.+++...... +..+.|||||++|++...
T Consensus 19 ~~~~~i~~~d~~~~~~~~~~~~~~~-----v~~~~~spdg~~l~~~~~-------------------------------- 61 (297)
T 2ojh_A 19 SMRSSIEIFNIRTRKMRVVWQTPEL-----FEAPNWSPDGKYLLLNSE-------------------------------- 61 (297)
T ss_dssp CCCEEEEEEETTTTEEEEEEEESSC-----CEEEEECTTSSEEEEEET--------------------------------
T ss_pred CcceeEEEEeCCCCceeeeccCCcc-----eEeeEECCCCCEEEEEcC--------------------------------
Confidence 4457899999999988877654433 778999999999988631
Q ss_pred hhccCCchhhhhhhhcccceEEEEcc-C-CCceecCCC---ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEE
Q 005240 139 DNLLKDEYDESLFDYYTTAQLVLGSL-D-GTAKDFGTP---AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQV 213 (706)
Q Consensus 139 ~~~~~~~~d~~~~~~~~~~~l~~~~l-~-g~~~~lt~~---~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~ 213 (706)
..|+++++ + ++...+... ..+..++|||||++|++....... ...|+.
T Consensus 62 ------------------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~---------~~~l~~ 114 (297)
T 2ojh_A 62 ------------------GLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFG---------KSAIYL 114 (297)
T ss_dssp ------------------TEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTS---------SCEEEE
T ss_pred ------------------CeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCC---------cceEEE
Confidence 57899999 5 666666543 456789999999999988754221 358899
Q ss_pred EecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceE
Q 005240 214 WTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEI 293 (706)
Q Consensus 214 ~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~ 293 (706)
++++++..+.+..... ...+.|+|||+. |++....++. -.||.++. .+++.+.
T Consensus 115 ~~~~~~~~~~~~~~~~--------------~~~~~~spdg~~-l~~~~~~~~~---------~~l~~~~~---~~~~~~~ 167 (297)
T 2ojh_A 115 LPSTGGTPRLMTKNLP--------------SYWHGWSPDGKS-FTYCGIRDQV---------FDIYSMDI---DSGVETR 167 (297)
T ss_dssp EETTCCCCEECCSSSS--------------EEEEEECTTSSE-EEEEEEETTE---------EEEEEEET---TTCCEEE
T ss_pred EECCCCceEEeecCCC--------------ccceEECCCCCE-EEEEECCCCc---------eEEEEEEC---CCCcceE
Confidence 9988877776654421 235689999998 7765433211 14777777 6677777
Q ss_pred EeecccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEeeec
Q 005240 294 LHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKK 373 (706)
Q Consensus 294 l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~ 373 (706)
+......+..+.|+|||+.|++..... +..+||.+++.++ ....+..... . ...+.|+|||++|++....
T Consensus 168 ~~~~~~~~~~~~~s~dg~~l~~~~~~~-~~~~i~~~~~~~~--~~~~~~~~~~-~------~~~~~~s~dg~~l~~~~~~ 237 (297)
T 2ojh_A 168 LTHGEGRNDGPDYSPDGRWIYFNSSRT-GQMQIWRVRVDGS--SVERITDSAY-G------DWFPHPSPSGDKVVFVSYD 237 (297)
T ss_dssp CCCSSSCEEEEEECTTSSEEEEEECTT-SSCEEEEEETTSS--CEEECCCCSE-E------EEEEEECTTSSEEEEEEEE
T ss_pred cccCCCccccceECCCCCEEEEEecCC-CCccEEEECCCCC--CcEEEecCCc-c------cCCeEECCCCCEEEEEEcC
Confidence 777777788999999999998875333 5678999998773 3444432211 1 1236799999999887643
Q ss_pred cCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeeecccchhhhhhhhhhccCCCceecccCCCEEEEEEecCC
Q 005240 374 ENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKT 449 (706)
Q Consensus 374 ~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~ 449 (706)
.+... .+......|+.+|+++++.+.+...... ......+.|||||+.|+++.....
T Consensus 238 ~~~~~----------~~~~~~~~l~~~d~~~~~~~~~~~~~~~---------~~~~~~~~~spdg~~l~~~~~~~~ 294 (297)
T 2ojh_A 238 ADVFD----------HPRDLDVRVQLMDMDGGNVETLFDLFGG---------QGTMNSPNWSPDGDEFAYVRYFPV 294 (297)
T ss_dssp TTCCS----------CCSSEEEEEEEEETTSCSCEEEEEEEES---------TTTSCSCCBCTTSSEEEEEEECCC
T ss_pred CCCCc----------ccccCceEEEEEecCCCCceeeeccCCC---------CcccccceECCCCCEEEEEEeccC
Confidence 10000 0000123588899988877666543210 012235789999999998876543
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.78 E-value=2e-17 Score=188.69 Aligned_cols=286 Identities=14% Similarity=0.096 Sum_probs=182.5
Q ss_pred CCCeeeeecCCCCCccc---------ceeeC--CCCCe-EEEEeeccccccccCCceeEEEEEcC--C-CceeecccCCC
Q 005240 18 LGPEKEVHGYPDGAKIN---------FVSWS--PDGKR-IAFSVRVDEEDNVSSCKLRVWIADAE--T-GEAKPLFESPD 82 (706)
Q Consensus 18 ~g~~~~i~~~~~~~~~~---------~~~~S--PDG~~-laf~~~~~~~~~~~~~~~~l~~~d~~--~-g~~~~lt~~~~ 82 (706)
+|+.++++..+. .+. .+.|| |||++ |||+.. ...+||+++++ + ++.++|+....
T Consensus 57 ~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~---------~~~~l~~~~~~~~g~~~~~~l~~~~~ 125 (662)
T 3azo_A 57 DGAEESALPAPW--NVRNRVFEYSGFPWAGVPRPAGGPLLVFTHF---------GDQRLYAFEPDAPGGAVPRPLTPVSA 125 (662)
T ss_dssp TSCEEESSCTTC--CBCCCGGGTCCCCEEEECCSSSSCEEEEEBT---------TTCCEEEECTTSTTCCCCEECSCCCC
T ss_pred CCCcceeCCCCc--cccccccccCCccceeeeecCCCeEEEEEEC---------CCCeEEEEcCCCCCCCCCEeccCCcc
Confidence 477888874332 233 56676 99999 999763 24789999998 6 88889986321
Q ss_pred ccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEE
Q 005240 83 ICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLG 162 (706)
Q Consensus 83 ~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~ 162 (706)
......+..++|||||++|++.+....... + .....+||++
T Consensus 126 ~~~~~~~~~~~~spDg~~l~~~~~~~~~~~------~---------------------------------~~~~~~i~~~ 166 (662)
T 3azo_A 126 VGGGLRWADPVLLPERGEVWCMAEEFTGEG------P---------------------------------SDVRRFLAAV 166 (662)
T ss_dssp STTCEEEEEEEEETTTTEEEEEEEEECSSS------T---------------------------------TCEEEEEEEE
T ss_pred CCCCccccCcEECCCCCEEEEEEecccCCC------C---------------------------------CCceeEEEEE
Confidence 000112568999999999999864211000 0 0023689999
Q ss_pred cc-C------CCceecC-CC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecC-CC---eeEEcccCCC
Q 005240 163 SL-D------GTAKDFG-TP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD-GK---LVRELCDLPP 229 (706)
Q Consensus 163 ~l-~------g~~~~lt-~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~---~~~~l~~~~~ 229 (706)
++ + ++.++|+ .. ..+..++|||||++|+|.+...+.. .....+|++++++ ++ +.++++....
T Consensus 167 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~-----~~~~~~i~~~d~~~~g~~~~~~~l~~~~~ 241 (662)
T 3azo_A 167 PLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRM-----PWEGTELKTARVTEDGRFADTRTLLGGPE 241 (662)
T ss_dssp ETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCC-----TTTCEEEEEEEECTTSCEEEEEEEEEETT
T ss_pred ECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCC-----CCCCcEEEEEEECCCCcccccEEeCCCCC
Confidence 99 4 5677887 65 6778899999999999988654210 0013589999999 45 6666665321
Q ss_pred CCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeeccccccccee---
Q 005240 230 AEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSW--- 306 (706)
Q Consensus 230 ~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~w--- 306 (706)
.....+.|||||+ |+|....++ ...||++|+ ++++.++++........+.|
T Consensus 242 ------------~~~~~~~~spdg~--l~~~~~~~~---------~~~l~~~~~---~~~~~~~l~~~~~~~~~p~w~~~ 295 (662)
T 3azo_A 242 ------------EAIAQAEWAPDGS--LIVATDRTG---------WWNLHRVDP---ATGAATQLCRREEEFAGPLWTPG 295 (662)
T ss_dssp ------------BCEEEEEECTTSC--EEEEECTTS---------SCEEEEECT---TTCCEEESSCCSSBSSCCCCSTT
T ss_pred ------------ceEcceEECCCCe--EEEEECCCC---------CeEEEEEEC---CCCceeecccccccccCcccccc
Confidence 1134679999998 666654332 125899988 67888887765544444445
Q ss_pred ------cCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEeeeccCCcceE
Q 005240 307 ------CDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIY 380 (706)
Q Consensus 307 ------spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~ 380 (706)
+||++.++ .... +..+||.+|++++ +.+.|.... .. ....|++||+.+++.....
T Consensus 296 ~~~~~~~~~~~~~~-~~~~--~~~~l~~~d~~~~--~~~~l~~~~-~~-------~~~~~s~~~~~~~~~~~~~------ 356 (662)
T 3azo_A 296 MRWFAPLANGLIAV-VHGK--GAAVLGILDPESG--ELVDAAGPW-TE-------WAATLTVSGTRAVGVAASP------ 356 (662)
T ss_dssp CCSEEECTTSCEEE-EEBS--SSCEEEEEETTTT--EEEECCSSC-CE-------EEEEEEEETTEEEEEEEET------
T ss_pred CceEeEeCCCEEEE-EEEc--CccEEEEEECCCC--cEEEecCCC-Ce-------EEEEEecCCCEEEEEEcCC------
Confidence 45666444 4333 5678999999874 344443211 11 1111277888777765321
Q ss_pred EEEecCCCCCCCCCCceeeeecCCCceeeeeccc
Q 005240 381 ILLNGRGFTPEGNIPFLDLFDINTGSKERIWESN 414 (706)
Q Consensus 381 ~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~ 414 (706)
.....||.+|+++++.++|+...
T Consensus 357 -----------~~~~~i~~~d~~~g~~~~l~~~~ 379 (662)
T 3azo_A 357 -----------RTAYEVVELDTVTGRARTIGARH 379 (662)
T ss_dssp -----------TEEEEEEEEETTTCCEEEEESCC
T ss_pred -----------CCCCEEEEEECCCCceEEeecCC
Confidence 11235888999888887776543
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.78 E-value=6.2e-16 Score=164.00 Aligned_cols=357 Identities=13% Similarity=0.057 Sum_probs=214.6
Q ss_pred cceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCcc
Q 005240 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~ 84 (706)
..|++.++.. ++..... +.+..+..++|||||++|+++.. ....|+++|+.+++..+......
T Consensus 12 ~~v~v~d~~~----~~~~~~~--~~~~~~~~~~~s~dg~~l~~~~~---------~d~~i~v~d~~~~~~~~~~~~~~-- 74 (391)
T 1l0q_A 12 DNISVIDVTS----NKVTATI--PVGSNPMGAVISPDGTKVYVANA---------HSNDVSIIDTATNNVIATVPAGS-- 74 (391)
T ss_dssp TEEEEEETTT----TEEEEEE--ECSSSEEEEEECTTSSEEEEEEG---------GGTEEEEEETTTTEEEEEEECSS--
T ss_pred CEEEEEECCC----CeEEEEe--ecCCCcceEEECCCCCEEEEECC---------CCCeEEEEECCCCeEEEEEECCC--
Confidence 4688999976 6554433 33445788999999999977652 33689999999888766543333
Q ss_pred ccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc
Q 005240 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (706)
Q Consensus 85 ~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l 164 (706)
.+..++|+|||++|++... ....|+++|+
T Consensus 75 ---~v~~~~~spdg~~l~~~~~------------------------------------------------~~~~v~v~d~ 103 (391)
T 1l0q_A 75 ---SPQGVAVSPDGKQVYVTNM------------------------------------------------ASSTLSVIDT 103 (391)
T ss_dssp ---SEEEEEECTTSSEEEEEET------------------------------------------------TTTEEEEEET
T ss_pred ---CccceEECCCCCEEEEEEC------------------------------------------------CCCEEEEEEC
Confidence 2778999999999887632 1157888998
Q ss_pred -CCCcee-cCCCceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCC
Q 005240 165 -DGTAKD-FGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVRE 242 (706)
Q Consensus 165 -~g~~~~-lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~ 242 (706)
+++... +.....+..++|+|||++|+++.... ..|++||+.+++........ .
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~------------~~v~~~d~~~~~~~~~~~~~-------------~ 158 (391)
T 1l0q_A 104 TSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGD------------KTVSVINTVTKAVINTVSVG-------------R 158 (391)
T ss_dssp TTTEEEEEEECSSSEEEEEECTTSSEEEEEETTT------------TEEEEEETTTTEEEEEEECC-------------S
T ss_pred CCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCC------------CEEEEEECCCCcEEEEEecC-------------C
Confidence 454433 33335678999999999998776432 48999999876655443321 1
Q ss_pred CCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeecccc
Q 005240 243 GMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTS 322 (706)
Q Consensus 243 g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~ 322 (706)
.+..+.|+|||+. |++.... .+.|+++|+ .+++.............+.|+|||+.|++..... .
T Consensus 159 ~~~~~~~~~dg~~-l~~~~~~-----------~~~v~~~d~---~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~-~ 222 (391)
T 1l0q_A 159 SPKGIAVTPDGTK-VYVANFD-----------SMSISVIDT---VTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDK-Y 222 (391)
T ss_dssp SEEEEEECTTSSE-EEEEETT-----------TTEEEEEET---TTTEEEEEEECSSEEEEEEECTTSSEEEEEEECS-S
T ss_pred CcceEEECCCCCE-EEEEeCC-----------CCEEEEEEC---CCCeEEEEEecCCCccceEECCCCCEEEEEecCc-C
Confidence 2347799999986 5544211 135889998 5555555555556677889999999988775321 3
Q ss_pred ceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeec
Q 005240 323 QTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDI 402 (706)
Q Consensus 323 ~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~ 402 (706)
...|+++|+.++ +......... ....+.|+|||++|++.... ...+..+|+
T Consensus 223 ~~~v~~~d~~~~--~~~~~~~~~~-------~~~~~~~s~dg~~l~~s~~~--------------------d~~v~v~d~ 273 (391)
T 1l0q_A 223 FNTVSMIDTGTN--KITARIPVGP-------DPAGIAVTPDGKKVYVALSF--------------------XNTVSVIDT 273 (391)
T ss_dssp CCEEEEEETTTT--EEEEEEECCS-------SEEEEEECTTSSEEEEEETT--------------------TTEEEEEET
T ss_pred CCcEEEEECCCC--eEEEEEecCC-------CccEEEEccCCCEEEEEcCC--------------------CCEEEEEEC
Confidence 456889998874 2333222111 11236789999998776421 113666777
Q ss_pred CCCceeeeecccchhhhh--hhhhhccC---CCceecccCC--C------EEEEEEecCCCCcEEEEEECCCCceeEeec
Q 005240 403 NTGSKERIWESNREKYFE--TAVALVFG---QGEEDINLNQ--L------KILTSKESKTEITQYHILSWPLKKSSQITN 469 (706)
Q Consensus 403 ~~g~~~~l~~~~~~~~~~--~~~~~~~~---~~~~~~s~Dg--~------~l~~~~~~~~~p~~v~~~~~~~~~~~~lt~ 469 (706)
.+++....+..... +.. ........ .....|+.+. . .+.|+ +......+|.|++.+|.......
T Consensus 274 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~--~~~~~~~~~~W~~~~g~~~~~~~ 350 (391)
T 1l0q_A 274 ATNTITATMAVGKN-PYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFT--DLSKDATEWKWDFGDGSSSKKQN 350 (391)
T ss_dssp TTTEEEEEEECSSS-EECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEE--ECCBSCSEEEEECSSSCEECSSS
T ss_pred CCCcEEEEEECCcC-CCccceeeecccccccccccccccccccccccccceEEEE--eCCCCceEEEEECCCCcccCcCC
Confidence 77765544432211 000 00000000 0012233332 1 13343 33345678999988776432111
Q ss_pred CCCCCCCCCCCceEEEEEEccCC--eEEEEEEEecC
Q 005240 470 FPHPYPTLASLQKEMIKYQRKDG--VPLTATLYLPP 503 (706)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~dg--~~i~~~l~~P~ 503 (706)
....+. ....-...+++.+.+| ..++...+.++
T Consensus 351 ~~~~~~-~~g~y~~~~~~~~~~g~~~~~~~~~v~~~ 385 (391)
T 1l0q_A 351 PTHTYS-ETGIYTVRLTVSNSNGTDSQISTVNVVLK 385 (391)
T ss_dssp CEECCS-SCEEEEEEEEEEETTEEEEEEEEEEEECT
T ss_pred CeEEeC-CCceEEEEEEEECCCCcEEEEEEEEEEcC
Confidence 101111 1223345666777788 46677777664
|
| >3f67_A Putative dienelactone hydrolase; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; 1.74A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.77 E-value=7.4e-18 Score=165.80 Aligned_cols=194 Identities=18% Similarity=0.217 Sum_probs=141.3
Q ss_pred CCceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEE
Q 005240 479 SLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAV 558 (706)
Q Consensus 479 ~~~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v 558 (706)
.++.+.++++. +|..+.++++.|++. .++.|+||++||..- ........++.|+++||.|
T Consensus 3 ~~~~~~~~~~~-~~~~~~~~~~~p~~~----~~~~p~vv~~HG~~g---------------~~~~~~~~~~~l~~~G~~v 62 (241)
T 3f67_A 3 AIIAGETSIPS-QGENMPAYHARPKNA----DGPLPIVIVVQEIFG---------------VHEHIRDLCRRLAQEGYLA 62 (241)
T ss_dssp CEEEEEEEEEE-TTEEEEEEEEEETTC----CSCEEEEEEECCTTC---------------SCHHHHHHHHHHHHTTCEE
T ss_pred cceeeeEEEec-CCcceEEEEecCCCC----CCCCCEEEEEcCcCc---------------cCHHHHHHHHHHHHCCcEE
Confidence 45778899998 899999999999862 235899999998421 1111124567788999999
Q ss_pred EEcCCCCcCCCCCCCCch----------hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCcee
Q 005240 559 LAGPSIPIIGEGDKLPND----------RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFC 628 (706)
Q Consensus 559 ~~~~~~~~~g~g~~~~~~----------~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~ 628 (706)
+.++.++..|........ ........|+.++++++.+++ +|+++|+++|+|+||.+++.++.++|+ ++
T Consensus 63 ~~~d~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~-~d~~~i~l~G~S~Gg~~a~~~a~~~~~-~~ 140 (241)
T 3f67_A 63 IAPELYFRQGDPNEYHDIPTLFKELVSKVPDAQVLADLDHVASWAARHG-GDAHRLLITGFCWGGRITWLYAAHNPQ-LK 140 (241)
T ss_dssp EEECTTTTTCCGGGCCSHHHHHHHTGGGSCHHHHHHHHHHHHHHHHTTT-EEEEEEEEEEETHHHHHHHHHHTTCTT-CC
T ss_pred EEecccccCCCCCchhhHHHHHHHhhhcCCchhhHHHHHHHHHHHHhcc-CCCCeEEEEEEcccHHHHHHHHhhCcC-cc
Confidence 998876543322111111 112456899999999998887 889999999999999999999999976 77
Q ss_pred EEEeccCCCCCCC----------------CCcc------------chHHHHHHHHHhCCCcEEEEEeCCCCccCCCc---
Q 005240 629 CGIARSGSYNKTL----------------TPFG------------FQAERFFDALKGHGALSRLVLLPFEHHVYAAR--- 677 (706)
Q Consensus 629 a~v~~~~~~d~~~----------------~~~~------------~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~--- 677 (706)
+++++.+...... .|.. -...+++++|++.+.+++++++|+++|.+...
T Consensus 141 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~g~~D~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~ 220 (241)
T 3f67_A 141 AAVAWYGKLVGEKSLNSPKHPVDIAVDLNAPVLGLYGAKDASIPQDTVETMRQALRAANATAEIVVYPEADHAFNADYRA 220 (241)
T ss_dssp EEEEESCCCSCCCCSSSCCCHHHHGGGCCSCEEEEEETTCTTSCHHHHHHHHHHHHHTTCSEEEEEETTCCTTTTCTTST
T ss_pred eEEEEeccccCCCccCCccCHHHhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHcCCCcEEEEECCCCcceecCCCC
Confidence 7777766543111 1110 12348999999999999999999999998632
Q ss_pred ----ccHHHHHHHHHHHHHHH
Q 005240 678 ----ENVMHVIWETDRWLQKY 694 (706)
Q Consensus 678 ----~~~~~~~~~~~~f~~~~ 694 (706)
....+.++.+++||++|
T Consensus 221 ~~~~~~~~~~~~~~~~fl~~~ 241 (241)
T 3f67_A 221 SYHEESAKDGWQRMLAWFAQY 241 (241)
T ss_dssp TCCHHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHHHhhC
Confidence 22467888899999764
|
| >4ao6_A Esterase; hydrolase, thermo label; 1.60A {Unidentified} PDB: 4ao7_A 4ao8_A | Back alignment and structure |
|---|
Probab=99.76 E-value=2.9e-17 Score=163.61 Aligned_cols=208 Identities=12% Similarity=0.064 Sum_probs=125.4
Q ss_pred CCceeEeecCCCCCCCCCCCceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCc
Q 005240 461 LKKSSQITNFPHPYPTLASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEF 540 (706)
Q Consensus 461 ~~~~~~lt~~~~~~~~~~~~~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~ 540 (706)
.|..+..++.+........++.+.+++. .||.+|+|+|++|++ ..|.|+||++||++.. ..
T Consensus 10 ~~~~r~~~~~~~~~~~~~~~~e~~~~~~-~dG~~i~g~l~~P~~-----~~~~p~Vl~~HG~g~~-------------~~ 70 (259)
T 4ao6_A 10 HGSMRHQMSWNGKDERKLSVQERGFSLE-VDGRTVPGVYWSPAE-----GSSDRLVLLGHGGTTH-------------KK 70 (259)
T ss_dssp -------CEECSCCEEETTEEEEEEEEE-ETTEEEEEEEEEESS-----SCCSEEEEEEC--------------------
T ss_pred cCcceeeeccCCCccccCCceEEEEEEe-eCCeEEEEEEEeCCC-----CCCCCEEEEeCCCccc-------------cc
Confidence 4555555544432222222344445554 599999999999976 2357999999998521 11
Q ss_pred CCCCchHHHHHHHCCeEEEEcCCCCcCCCCCCCC-----c----h---------hhHHHHHHHHHHHHHHHHHcCCCCCC
Q 005240 541 SGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLP-----N----D---------RFVEQLVSSAEAAVEEVVRRGVADPS 602 (706)
Q Consensus 541 ~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~-----~----~---------~~~~~~~~D~~~~~~~l~~~~~id~~ 602 (706)
.......++.|+++||+|+.++.+|....+.... . . ......+.|..++++++... +|+.
T Consensus 71 ~~~~~~~a~~la~~Gy~Vl~~D~rG~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~l~~l~~~--~d~~ 148 (259)
T 4ao6_A 71 VEYIEQVAKLLVGRGISAMAIDGPGHGERASVQAGREPTDVVGLDAFPRMWHEGGGTAAVIADWAAALDFIEAE--EGPR 148 (259)
T ss_dssp -CHHHHHHHHHHHTTEEEEEECCCC-------------CCGGGSTTHHHHHHHTTHHHHHHHHHHHHHHHHHHH--HCCC
T ss_pred chHHHHHHHHHHHCCCeEEeeccCCCCCCCCcccccccchhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHhhhc--cCCc
Confidence 1112245788999999999988765421111100 0 0 11223467888889988664 6889
Q ss_pred cEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCCCC------------CCCcc------------chHHHHHHHHHhC
Q 005240 603 RIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKT------------LTPFG------------FQAERFFDALKGH 658 (706)
Q Consensus 603 ~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d~~------------~~~~~------------~~~~~~~~~l~~~ 658 (706)
||+++|+|+||++++.++.+.| +++|++...+..... ..|.. -+..+++++|..
T Consensus 149 rv~~~G~S~GG~~a~~~a~~~p-ri~Aav~~~~~~~~~~~~~~~~~a~~i~~P~Li~hG~~D~~vp~~~~~~l~~al~~- 226 (259)
T 4ao6_A 149 PTGWWGLSMGTMMGLPVTASDK-RIKVALLGLMGVEGVNGEDLVRLAPQVTCPVRYLLQWDDELVSLQSGLELFGKLGT- 226 (259)
T ss_dssp CEEEEECTHHHHHHHHHHHHCT-TEEEEEEESCCTTSTTHHHHHHHGGGCCSCEEEEEETTCSSSCHHHHHHHHHHCCC-
T ss_pred eEEEEeechhHHHHHHHHhcCC-ceEEEEEeccccccccccchhhhhccCCCCEEEEecCCCCCCCHHHHHHHHHHhCC-
Confidence 9999999999999999999996 566666554433211 12221 123477777743
Q ss_pred CCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHhc
Q 005240 659 GALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCL 696 (706)
Q Consensus 659 ~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~~~~l~ 696 (706)
.+..+++|||..|.+ ...+.++.+++||++||+
T Consensus 227 -~~k~l~~~~G~H~~~----p~~e~~~~~~~fl~~hLk 259 (259)
T 4ao6_A 227 -KQKTLHVNPGKHSAV----PTWEMFAGTVDYLDQRLK 259 (259)
T ss_dssp -SSEEEEEESSCTTCC----CHHHHTHHHHHHHHHHCC
T ss_pred -CCeEEEEeCCCCCCc----CHHHHHHHHHHHHHHhcC
Confidence 456889999844433 245788999999999985
|
| >3ga7_A Acetyl esterase; phosphoserine, IDP00896, hydrolase, serine structural genomics, center for structural genomics of INFE diseases, csgid; HET: SEP MSE; 1.55A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.8e-17 Score=171.40 Aligned_cols=191 Identities=12% Similarity=0.108 Sum_probs=145.0
Q ss_pred CceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHH-CCeEE
Q 005240 480 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA-RRFAV 558 (706)
Q Consensus 480 ~~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~G~~v 558 (706)
+..+.+++++.|| .|++++|.|.+. +.|+||++|||++.. ++... ....+..|++ .||+|
T Consensus 61 ~~~~~~~~~~~~g-~i~~~~~~p~~~------~~p~vv~~HGgg~~~--------g~~~~----~~~~~~~la~~~g~~V 121 (326)
T 3ga7_A 61 MTTRTCAVPTPYG-DVTTRLYSPQPT------SQATLYYLHGGGFIL--------GNLDT----HDRIMRLLARYTGCTV 121 (326)
T ss_dssp CEEEEEEECCTTS-CEEEEEEESSSS------CSCEEEEECCSTTTS--------CCTTT----THHHHHHHHHHHCSEE
T ss_pred cceEEEEeecCCC-CeEEEEEeCCCC------CCcEEEEECCCCccc--------CChhh----hHHHHHHHHHHcCCEE
Confidence 4558999999898 899999999751 138999999997532 11111 1234566777 89999
Q ss_pred EEcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcC---CCCCCcEEEEEechHHHHHHHHHHhCCCc------eeE
Q 005240 559 LAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRG---VADPSRIAVGGHSYGAFMTAHLLAHAPHL------FCC 629 (706)
Q Consensus 559 ~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~---~id~~~i~i~G~S~GG~~a~~~~~~~p~~------~~a 629 (706)
+..++++..++. ....+.|+.++++|+.++. .+|++||+|+|+|+||++|+.++.+.++. +++
T Consensus 122 ~~~dyr~~p~~~--------~~~~~~D~~~a~~~l~~~~~~~~~d~~ri~l~G~S~GG~la~~~a~~~~~~~~~~~~~~~ 193 (326)
T 3ga7_A 122 IGIDYSLSPQAR--------YPQAIEETVAVCSYFSQHADEYSLNVEKIGFAGDSAGAMLALASALWLRDKHIRCGNVIA 193 (326)
T ss_dssp EEECCCCTTTSC--------TTHHHHHHHHHHHHHHHTTTTTTCCCSEEEEEEETHHHHHHHHHHHHHHHHTCCSSEEEE
T ss_pred EEeeCCCCCCCC--------CCcHHHHHHHHHHHHHHhHHHhCCChhheEEEEeCHHHHHHHHHHHHHHhcCCCccCceE
Confidence 998887543321 1234689999999999863 37999999999999999999999887664 999
Q ss_pred EEeccCCCCCCCC-------------------------------------------------Ccc----------chHHH
Q 005240 630 GIARSGSYNKTLT-------------------------------------------------PFG----------FQAER 650 (706)
Q Consensus 630 ~v~~~~~~d~~~~-------------------------------------------------~~~----------~~~~~ 650 (706)
+++.+|+++.... |.. -+..+
T Consensus 194 ~vl~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~~~~~~~ 273 (326)
T 3ga7_A 194 ILLWYGLYGLQDSVSRRLFGGAWDGLTREDLDMYEKAYLRNDEDRESPWYCLFNNDLTRDVPPCFIASAEFDPLIDDSRL 273 (326)
T ss_dssp EEEESCCCSCSCCHHHHHCCCTTTTCCHHHHHHHHHHHCSSGGGGGCTTTSGGGSCCSSCCCCEEEEEETTCTTHHHHHH
T ss_pred EEEeccccccCCChhHhhhcCCCCCCCHHHHHHHHHHhCCCCCccCCcccCCCcchhhcCCCCEEEEecCcCcCHHHHHH
Confidence 9999987653210 000 02338
Q ss_pred HHHHHHhCCCcEEEEEeCCCCccCCCcc----cHHHHHHHHHHHHHHHhcc
Q 005240 651 FFDALKGHGALSRLVLLPFEHHVYAARE----NVMHVIWETDRWLQKYCLS 697 (706)
Q Consensus 651 ~~~~l~~~~~~~~~~~~~~~~H~~~~~~----~~~~~~~~~~~f~~~~l~~ 697 (706)
++++|++.|+++++++|||++|.|.... ...+..+.+.+||+++|..
T Consensus 274 ~~~~l~~~g~~~~~~~~~g~~H~f~~~~~~~~~~~~~~~~~~~fl~~~l~~ 324 (326)
T 3ga7_A 274 LHQTLQAHQQPCEYKMYPGTLHAFLHYSRMMTIADDALQDGARFFMARMKT 324 (326)
T ss_dssp HHHHHHHTTCCEEEEEETTCCTTGGGGTTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHCCCcEEEEEeCCCccchhhhcCccHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999985322 3478999999999999864
|
| >3doh_A Esterase; alpha-beta hydrolase, beta sheet; 2.60A {Thermotoga maritima} PDB: 3doi_A | Back alignment and structure |
|---|
Probab=99.76 E-value=1.8e-17 Score=175.13 Aligned_cols=209 Identities=16% Similarity=0.182 Sum_probs=151.4
Q ss_pred ceEEEEEEcc-CCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEE
Q 005240 481 QKEMIKYQRK-DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 559 (706)
Q Consensus 481 ~~~~~~~~~~-dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~ 559 (706)
..+.+.+.+. ||..+++++|.|+++++.+ ++|+||++||++............ ................|+.|+
T Consensus 143 ~~~~~~~~~~~dg~~l~~~v~~P~~~~~~~--~~Pvvv~lHG~g~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~vv 217 (380)
T 3doh_A 143 DFLAFTFKDPETGVEIPYRLFVPKDVNPDR--KYPLVVFLHGAGERGTDNYLQVAG---NRGAVVWAQPRYQVVHPCFVL 217 (380)
T ss_dssp GEEEEEEECTTTCCEEEEEEECCSSCCTTS--CEEEEEEECCGGGCSSSSSHHHHS---STTTTGGGSHHHHTTSCCEEE
T ss_pred cccceeeccCCCCcEEEEEEEcCCCCCCCC--CccEEEEECCCCCCCCchhhhhhc---cccceeecCccccccCCEEEE
Confidence 5678899998 9999999999999876544 599999999986321100000000 000001111233446889999
Q ss_pred EcCCCCcCCCCCCCCc---hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCC
Q 005240 560 AGPSIPIIGEGDKLPN---DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 636 (706)
Q Consensus 560 ~~~~~~~~g~g~~~~~---~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~ 636 (706)
.++.++..+++..+.. .......+.|+.++++++.++..+|++||+|+|+|+||++++.++.++|++|+++++.+|.
T Consensus 218 ~pd~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~i~~~~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~sg~ 297 (380)
T 3doh_A 218 APQCPPNSSWSTLFTDRENPFNPEKPLLAVIKIIRKLLDEYNIDENRIYITGLSMGGYGTWTAIMEFPELFAAAIPICGG 297 (380)
T ss_dssp EECCCTTCCSBTTTTCSSCTTSBCHHHHHHHHHHHHHHHHSCEEEEEEEEEEETHHHHHHHHHHHHCTTTCSEEEEESCC
T ss_pred EecCCCCCcccccccccccccCCcchHHHHHHHHHHHHHhcCCCcCcEEEEEECccHHHHHHHHHhCCccceEEEEecCC
Confidence 9888877777665442 1112345788889999999887799999999999999999999999999999999999998
Q ss_pred CCCCC------CCcc------------chHHHHHHHHHhCCCcEEEEEeCCC---CccCCCcccHHHHHH--HHHHHHHH
Q 005240 637 YNKTL------TPFG------------FQAERFFDALKGHGALSRLVLLPFE---HHVYAARENVMHVIW--ETDRWLQK 693 (706)
Q Consensus 637 ~d~~~------~~~~------------~~~~~~~~~l~~~~~~~~~~~~~~~---~H~~~~~~~~~~~~~--~~~~f~~~ 693 (706)
.+... .|.. -+..+++++|++.++++++++||++ +|.|.....+...+. .+++||.+
T Consensus 298 ~~~~~~~~~~~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~h~~h~~~~H~~~~~~~~~~~i~~wL~~ 377 (380)
T 3doh_A 298 GDVSKVERIKDIPIWVFHAEDDPVVPVENSRVLVKKLAEIGGKVRYTEYEKGFMEKHGWDPHGSWIPTYENQEAIEWLFE 377 (380)
T ss_dssp CCGGGGGGGTTSCEEEEEETTCSSSCTHHHHHHHHHHHHTTCCEEEEEECTTHHHHTTCCTTCTHHHHHTCHHHHHHHHT
T ss_pred CChhhhhhccCCCEEEEecCCCCccCHHHHHHHHHHHHHCCCceEEEEecCCcccCCCCCCchhHHHhcCCHHHHHHHHh
Confidence 65321 2211 1345899999999999999999999 565554445666677 89999987
Q ss_pred H
Q 005240 694 Y 694 (706)
Q Consensus 694 ~ 694 (706)
+
T Consensus 378 ~ 378 (380)
T 3doh_A 378 Q 378 (380)
T ss_dssp C
T ss_pred h
Confidence 5
|
| >3fak_A Esterase/lipase, ESTE5; HSL, hydrolase; 1.90A {Uncultured bacterium} PDB: 3g9t_A 3g9u_A 3g9z_A 3h17_A* 3h18_A* 3h19_A 3h1a_A 3h1b_A 3l1h_A 3l1i_A 3l1j_A 3v9a_A | Back alignment and structure |
|---|
Probab=99.76 E-value=6.9e-18 Score=174.02 Aligned_cols=180 Identities=18% Similarity=0.105 Sum_probs=134.2
Q ss_pred EEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHH-CCeEEEEcCCCCcCCCCCC
Q 005240 494 PLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA-RRFAVLAGPSIPIIGEGDK 572 (706)
Q Consensus 494 ~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~G~~v~~~~~~~~~g~g~~ 572 (706)
.+++++|.|++ .++.|+||++|||++.. ++...+ ..++..|++ .||+|+.+++++..+.
T Consensus 66 ~i~~~~~~p~~-----~~~~p~vv~~HGGg~~~--------g~~~~~----~~~~~~la~~~g~~vv~~dyr~~p~~--- 125 (322)
T 3fak_A 66 GCAAEWVRAPG-----CQAGKAILYLHGGGYVM--------GSINTH----RSMVGEISRASQAAALLLDYRLAPEH--- 125 (322)
T ss_dssp TEEEEEEECTT-----CCTTCEEEEECCSTTTS--------CCHHHH----HHHHHHHHHHHTSEEEEECCCCTTTS---
T ss_pred CeEEEEEeCCC-----CCCccEEEEEcCCcccc--------CChHHH----HHHHHHHHHhcCCEEEEEeCCCCCCC---
Confidence 48999999975 12479999999986532 111111 133455665 6999999888754322
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCc----eeEEEeccCCCCCCCC------
Q 005240 573 LPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHL----FCCGIARSGSYNKTLT------ 642 (706)
Q Consensus 573 ~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~----~~a~v~~~~~~d~~~~------ 642 (706)
. ....++|+.++++|+.++ .+|++||+|+|+|+||++|+.++.+.+++ ++++++.+|.++....
T Consensus 126 -~----~~~~~~D~~~a~~~l~~~-~~d~~ri~l~G~S~GG~lA~~~a~~~~~~~~~~~~~~vl~~p~~~~~~~~~~~~~ 199 (322)
T 3fak_A 126 -P----FPAAVEDGVAAYRWLLDQ-GFKPQHLSISGDSAGGGLVLAVLVSARDQGLPMPASAIPISPWADMTCTNDSFKT 199 (322)
T ss_dssp -C----TTHHHHHHHHHHHHHHHH-TCCGGGEEEEEETHHHHHHHHHHHHHHHTTCCCCSEEEEESCCCCTTCCCTHHHH
T ss_pred -C----CCcHHHHHHHHHHHHHHc-CCCCceEEEEEcCcCHHHHHHHHHHHHhcCCCCceEEEEECCEecCcCCCcCHHH
Confidence 1 234578999999999988 67999999999999999999999887654 9999999998764310
Q ss_pred ------------------------------------------Ccc----------chHHHHHHHHHhCCCcEEEEEeCCC
Q 005240 643 ------------------------------------------PFG----------FQAERFFDALKGHGALSRLVLLPFE 670 (706)
Q Consensus 643 ------------------------------------------~~~----------~~~~~~~~~l~~~~~~~~~~~~~~~ 670 (706)
|.. -+..+++++|++.|+++++++|||+
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~pP~li~~g~~D~~~~~~~~~~~~l~~~g~~~~~~~~~g~ 279 (322)
T 3fak_A 200 RAEADPMVAPGGINKMAARYLNGADAKHPYASPNFANLKGLPPLLIHVGRDEVLLDDSIKLDAKAKADGVKSTLEIWDDM 279 (322)
T ss_dssp TTTTCCSCCSSHHHHHHHHHHTTSCTTCTTTCGGGSCCTTCCCEEEEEETTSTTHHHHHHHHHHHHHTTCCEEEEEETTC
T ss_pred hCccCcccCHHHHHHHHHHhcCCCCCCCcccCCCcccccCCChHhEEEcCcCccHHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence 000 0223899999999999999999999
Q ss_pred CccCCC----cccHHHHHHHHHHHHHHHhccCC
Q 005240 671 HHVYAA----RENVMHVIWETDRWLQKYCLSNT 699 (706)
Q Consensus 671 ~H~~~~----~~~~~~~~~~~~~f~~~~l~~~~ 699 (706)
+|.|.. .....+.++.+.+||+++|....
T Consensus 280 ~H~~~~~~~~~~~~~~~~~~i~~fl~~~l~~~~ 312 (322)
T 3fak_A 280 IHVWHAFHPMLPEGKQAIVRVGEFMREQWAALA 312 (322)
T ss_dssp CTTGGGGTTTCHHHHHHHHHHHHHHHHHHHC--
T ss_pred eeehhhccCCCHHHHHHHHHHHHHHHHHHhcch
Confidence 998863 22357889999999999987543
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=7.6e-16 Score=176.87 Aligned_cols=298 Identities=10% Similarity=0.044 Sum_probs=182.1
Q ss_pred cceeEeecCCCCCCCCeeeeec---CCCCC--cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeeccc
Q 005240 5 TGIGIHRLLPDDSLGPEKEVHG---YPDGA--KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFE 79 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~i~~---~~~~~--~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~ 79 (706)
..|++.++.. |+.+.+.. +..+. .+..++|||||++|||+.+.. ++...+||++|+++|+..+++.
T Consensus 98 ~~l~~~~~~~----~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~-----G~~~~~i~v~d~~tg~~~~~~~ 168 (710)
T 2xdw_A 98 RVLYVQDSLE----GEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSAS-----GSDWVTIKFMKVDGAKELPDVL 168 (710)
T ss_dssp CEEEEESSTT----SCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEET-----TCSCEEEEEEETTTTEEEEEEE
T ss_pred EEEEEEcCCC----CCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCC-----CCceEEEEEEECCCCCCCcccc
Confidence 3567776644 66666532 22222 467899999999999998631 1333599999999999887643
Q ss_pred CCCccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceE
Q 005240 80 SPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQL 159 (706)
Q Consensus 80 ~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l 159 (706)
.... +..+.|||||+.|+|.+........ .+.. . . .....+|
T Consensus 169 ~~~~-----~~~~~wspDg~~l~~~~~~~~~~~~------~~~~---~--~----------------------~~~~~~v 210 (710)
T 2xdw_A 169 ERVK-----FSCMAWTHDGKGMFYNAYPQQDGKS------DGTE---T--S----------------------TNLHQKL 210 (710)
T ss_dssp EEEC-----SCCEEECTTSSEEEEEECCCCSSCC------SSSC---C--C----------------------CCCCCEE
T ss_pred cCcc-----cceEEEEeCCCEEEEEEECCccccc------cccc---c--c----------------------cCCCCEE
Confidence 2211 5678999999999998754221100 0000 0 0 0012679
Q ss_pred EEEcc-CCCc--eecCCC----ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCC------C--eeEEc
Q 005240 160 VLGSL-DGTA--KDFGTP----AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG------K--LVREL 224 (706)
Q Consensus 160 ~~~~l-~g~~--~~lt~~----~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------~--~~~~l 224 (706)
|++++ +++. +.+... .....+.|||||++|++.+..... ...+|+++++++ + ..+.|
T Consensus 211 ~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~--------~~~~l~~~d~~~~~~~~~~~~~~~~l 282 (710)
T 2xdw_A 211 YYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCD--------PVNRLWYCDLQQESNGITGILKWVKL 282 (710)
T ss_dssp EEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSS--------SCCEEEEEEGGGSSSSSCSSCCCEEE
T ss_pred EEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCC--------CccEEEEEECcccccccCCccceEEe
Confidence 99999 4432 333222 235689999999999998764321 035899999986 4 46666
Q ss_pred ccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCC---ceEEeeccc--
Q 005240 225 CDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEK---PEILHKLDL-- 299 (706)
Q Consensus 225 ~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~---~~~l~~~~~-- 299 (706)
+..... . ...|+|||+. |++..+.+. .+..|+++|+ +++. .+.|+....
T Consensus 283 ~~~~~~-------------~-~~~~s~dg~~-l~~~s~~~~--------~~~~l~~~d~---~~~~~~~~~~l~~~~~~~ 336 (710)
T 2xdw_A 283 IDNFEG-------------E-YDYVTNEGTV-FTFKTNRHS--------PNYRLINIDF---TDPEESKWKVLVPEHEKD 336 (710)
T ss_dssp ECSSSS-------------C-EEEEEEETTE-EEEEECTTC--------TTCEEEEEET---TSCCGGGCEEEECCCSSC
T ss_pred eCCCCc-------------E-EEEEeccCCE-EEEEECCCC--------CCCEEEEEeC---CCCCcccceeccCCCCCC
Confidence 543211 1 2369999998 887754321 1235899998 5554 366665433
Q ss_pred ccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEeeeccCCcce
Q 005240 300 RFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQI 379 (706)
Q Consensus 300 ~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~ 379 (706)
.+..+.|++++. |++.... ++..+||++++.+++ ....+.. ....+ ..+.++||++.+++.....
T Consensus 337 ~~~~~~~~~~~~-lv~~~~~-~g~~~l~~~~~~~g~-~~~~l~~-~~~~v------~~~~~s~d~~~l~~~~ss~----- 401 (710)
T 2xdw_A 337 VLEWVACVRSNF-LVLCYLH-DVKNTLQLHDLATGA-LLKIFPL-EVGSV------VGYSGQKKDTEIFYQFTSF----- 401 (710)
T ss_dssp EEEEEEEETTTE-EEEEEEE-TTEEEEEEEETTTCC-EEEEECC-CSSEE------EEEECCTTCSEEEEEEECS-----
T ss_pred eEEEEEEEcCCE-EEEEEEE-CCEEEEEEEECCCCC-EEEecCC-CCceE------EEEecCCCCCEEEEEEeCC-----
Confidence 567789996555 4444333 356789999986532 2233321 11111 1256788998887765321
Q ss_pred EEEEecCCCCCCCCCCceeeeecCCCc--eeee
Q 005240 380 YILLNGRGFTPEGNIPFLDLFDINTGS--KERI 410 (706)
Q Consensus 380 ~~~~~~~g~~~~~~~~~l~~~d~~~g~--~~~l 410 (706)
..-..++++|+++|+ .+.+
T Consensus 402 ------------~~P~~i~~~d~~tg~~~~~~l 422 (710)
T 2xdw_A 402 ------------LSPGIIYHCDLTKEELEPRVF 422 (710)
T ss_dssp ------------SCCCEEEEEETTSSSCCCEEE
T ss_pred ------------CCCCEEEEEECCCCccceEEe
Confidence 112358888988887 4444
|
| >3hxk_A Sugar hydrolase; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 3.20A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.8e-17 Score=164.56 Aligned_cols=198 Identities=15% Similarity=0.138 Sum_probs=141.0
Q ss_pred EEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCC
Q 005240 486 KYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIP 565 (706)
Q Consensus 486 ~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~ 565 (706)
++...+|..+..++..|....+ .++.|+||++|||++.. +. .......+..|+++||.|+.+++++
T Consensus 18 ~~~~~~g~~l~~~~~~~~~~~~--~~~~p~vv~~HGgg~~~--------~~----~~~~~~~~~~l~~~G~~v~~~d~~g 83 (276)
T 3hxk_A 18 TFSLNDTAWVDFYQLQNPRQNE--NYTFPAIIICPGGGYQH--------IS----QRESDPLALAFLAQGYQVLLLNYTV 83 (276)
T ss_dssp ECCCBTTBEEEEECCCC--------CCBCEEEEECCSTTTS--------CC----GGGSHHHHHHHHHTTCEEEEEECCC
T ss_pred cccCCCCeEEEEEEeCCccccc--CCCCCEEEEEcCCcccc--------CC----chhhHHHHHHHHHCCCEEEEecCcc
Confidence 4556688888877766653222 13589999999986431 11 1112345678889999999977764
Q ss_pred cCCCCCCCCchhhHHHHHHHHHHHHHHHHHcC---CCCCCcEEEEEechHHHHHHHHHHh-CCCceeEEEeccCCCCCCC
Q 005240 566 IIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRG---VADPSRIAVGGHSYGAFMTAHLLAH-APHLFCCGIARSGSYNKTL 641 (706)
Q Consensus 566 ~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~---~id~~~i~i~G~S~GG~~a~~~~~~-~p~~~~a~v~~~~~~d~~~ 641 (706)
. |.+... ......+.|+.++++|+.+.. .+|+++|+|+|+|+||++++.++.+ .+.+++++++.+|..+...
T Consensus 84 ~---g~s~~~-~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~v~~~p~~~~~~ 159 (276)
T 3hxk_A 84 M---NKGTNY-NFLSQNLEEVQAVFSLIHQNHKEWQINPEQVFLLGCSAGGHLAAWYGNSEQIHRPKGVILCYPVTSFTF 159 (276)
T ss_dssp T---TSCCCS-CTHHHHHHHHHHHHHHHHHHTTTTTBCTTCCEEEEEHHHHHHHHHHSSSCSTTCCSEEEEEEECCBTTS
T ss_pred C---CCcCCC-CcCchHHHHHHHHHHHHHHhHHHcCCCcceEEEEEeCHHHHHHHHHHhhccCCCccEEEEecCcccHHh
Confidence 4 332211 123466889999999998863 2799999999999999999999998 7789999999998875110
Q ss_pred -----------------------------CCcc------------chHHHHHHHHHhCCCcEEEEEeCCCCccCCCcc--
Q 005240 642 -----------------------------TPFG------------FQAERFFDALKGHGALSRLVLLPFEHHVYAARE-- 678 (706)
Q Consensus 642 -----------------------------~~~~------------~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~-- 678 (706)
.|.. -...+++++|+..+.++++++||+++|.+....
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~lii~G~~D~~vp~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~ 239 (276)
T 3hxk_A 160 GWPSDLSHFNFEIENISEYNISEKVTSSTPPTFIWHTADDEGVPIYNSLKYCDRLSKHQVPFEAHFFESGPHGVSLANRT 239 (276)
T ss_dssp SCSSSSSSSCCCCSCCGGGBTTTTCCTTSCCEEEEEETTCSSSCTHHHHHHHHHHHTTTCCEEEEEESCCCTTCTTCSTT
T ss_pred hCCcchhhhhcCchhhhhCChhhccccCCCCEEEEecCCCceeChHHHHHHHHHHHHcCCCeEEEEECCCCCCccccCcc
Confidence 1110 123589999999999999999999999886422
Q ss_pred ----------cHHHHHHHHHHHHHHHhccCCCC
Q 005240 679 ----------NVMHVIWETDRWLQKYCLSNTSD 701 (706)
Q Consensus 679 ----------~~~~~~~~~~~f~~~~l~~~~~~ 701 (706)
...++.+.+.+||+++.+.....
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~ 272 (276)
T 3hxk_A 240 TAPSDAYCLPSVHRWVSWASDWLERQIKNLEHH 272 (276)
T ss_dssp SCSSSTTCCHHHHTHHHHHHHHHHHHHHTTC--
T ss_pred ccccccccCchHHHHHHHHHHHHHhCccccccc
Confidence 34688899999999998765543
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=2.1e-15 Score=157.21 Aligned_cols=279 Identities=9% Similarity=0.015 Sum_probs=176.3
Q ss_pred CCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCC
Q 005240 29 DGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSS 108 (706)
Q Consensus 29 ~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~ 108 (706)
.+.....++|||||++|+.+..... .......|+++|+++++..+....... +..+.|+|||++|++...
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~---~~~~~~~v~~~d~~~~~~~~~~~~~~~-----~~~~~~s~dg~~l~v~~~-- 108 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSR---KLDKGGVVYRLDPVTLEVTQAIHNDLK-----PFGATINNTTQTLWFGNT-- 108 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCT---TTEESEEEEEECTTTCCEEEEEEESSC-----CCSEEEETTTTEEEEEET--
T ss_pred hccCccceEECCCCCEEEEEcCCCc---CCCCCccEEEEcCCCCeEEEEEecCCC-----cceEEECCCCCEEEEEec--
Confidence 3345778899999999966553100 001257899999998876655433322 568899999998777642
Q ss_pred CCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCCc-eecCCC--c--------e
Q 005240 109 RRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTA-KDFGTP--A--------V 176 (706)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~-~~lt~~--~--------~ 176 (706)
....|+++|+ +++. ..+... . .
T Consensus 109 ----------------------------------------------~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (353)
T 3vgz_A 109 ----------------------------------------------VNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQ 142 (353)
T ss_dssp ----------------------------------------------TTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCE
T ss_pred ----------------------------------------------CCCEEEEEeCCCCeeEEEEecCCCccccccCCCC
Confidence 1157888888 5543 333322 1 2
Q ss_pred EeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCce
Q 005240 177 YTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPST 256 (706)
Q Consensus 177 ~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~ 256 (706)
...++|||||++|++..... ...|++||+.+++........+ ..+..+.|+|||+.
T Consensus 143 ~~~~~~s~dg~~l~~~~~~~-----------~~~i~~~d~~~~~~~~~~~~~~------------~~~~~~~~s~dg~~- 198 (353)
T 3vgz_A 143 PRELVADDATNTVYISGIGK-----------ESVIWVVDGGNIKLKTAIQNTG------------KMSTGLALDSEGKR- 198 (353)
T ss_dssp EEEEEEETTTTEEEEEEESS-----------SCEEEEEETTTTEEEEEECCCC------------TTCCCCEEETTTTE-
T ss_pred CceEEECCCCCEEEEEecCC-----------CceEEEEcCCCCceEEEecCCC------------CccceEEECCCCCE-
Confidence 57799999999998776432 2479999998776554433111 11346799999997
Q ss_pred EEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeec-----ccccccceecCCCceEEEEeeccccceEEEEEcC
Q 005240 257 LYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL-----DLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCP 331 (706)
Q Consensus 257 l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~-----~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~ 331 (706)
|++.. . .+.|+++|. .+++....... ......+.|+|||+.|++... ....|+++|+
T Consensus 199 l~~~~-~-----------~~~i~~~d~---~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~---~~~~v~~~d~ 260 (353)
T 3vgz_A 199 LYTTN-A-----------DGELITIDT---ADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDS---KAAEVLVVDT 260 (353)
T ss_dssp EEEEC-T-----------TSEEEEEET---TTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEES---SSSEEEEEET
T ss_pred EEEEc-C-----------CCeEEEEEC---CCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeC---CCCEEEEEEC
Confidence 66442 1 124778888 55554433222 223445799999998876542 2356999999
Q ss_pred CCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeee
Q 005240 332 GSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIW 411 (706)
Q Consensus 332 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~ 411 (706)
.+++ ....... +....+.++|||+++++.... ...|..+|+.+++....+
T Consensus 261 ~~~~--~~~~~~~--------~~~~~~~~s~dg~~l~v~~~~--------------------~~~v~~~d~~~~~~~~~~ 310 (353)
T 3vgz_A 261 RNGN--ILAKVAA--------PESLAVLFNPARNEAYVTHRQ--------------------AGKVSVIDAKSYKVVKTF 310 (353)
T ss_dssp TTCC--EEEEEEC--------SSCCCEEEETTTTEEEEEETT--------------------TTEEEEEETTTTEEEEEE
T ss_pred CCCc--EEEEEEc--------CCCceEEECCCCCEEEEEECC--------------------CCeEEEEECCCCeEEEEE
Confidence 8743 3322221 111347789999988776521 124777888888765554
Q ss_pred cccchhhhhhhhhhccCCCceecccCCCEEEEEEec
Q 005240 412 ESNREKYFETAVALVFGQGEEDINLNQLKILTSKES 447 (706)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~ 447 (706)
..... ...+.|+|||+.|+++...
T Consensus 311 ~~~~~------------~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 311 DTPTH------------PNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp ECCSE------------EEEEEECTTSCEEEEEEEC
T ss_pred ecCCC------------CCeEEEcCCCCEEEEEEcc
Confidence 43221 1246899999988777665
|
| >2o2g_A Dienelactone hydrolase; YP_324580.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.92A {Anabaena variabilis} | Back alignment and structure |
|---|
Probab=99.74 E-value=7e-17 Score=156.57 Aligned_cols=194 Identities=16% Similarity=0.135 Sum_probs=147.1
Q ss_pred CCceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEE
Q 005240 479 SLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAV 558 (706)
Q Consensus 479 ~~~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v 558 (706)
.+..+.+.++. +|..+.++++.|++ +.|+||++||.+.. . ..+ .....++.|+++||.|
T Consensus 9 ~~~~~~~~~~~-~g~~l~~~~~~p~~-------~~p~vv~~hG~~~~--------~---~~~--~~~~~~~~l~~~G~~v 67 (223)
T 2o2g_A 9 QPQEYAVSVSV-GEVKLKGNLVIPNG-------ATGIVLFAHGSGSS--------R---YSP--RNRYVAEVLQQAGLAT 67 (223)
T ss_dssp CCCEEEEEEEE-TTEEEEEEEECCTT-------CCEEEEEECCTTCC--------T---TCH--HHHHHHHHHHHHTCEE
T ss_pred CceeeEEEEec-CCeEEEEEEecCCC-------CceEEEEecCCCCC--------C---Ccc--chHHHHHHHHHCCCEE
Confidence 35678888887 89999999999964 26999999996421 0 000 0113567788899999
Q ss_pred EEcCCCCcCCCCCCCCch------hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEe
Q 005240 559 LAGPSIPIIGEGDKLPND------RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIA 632 (706)
Q Consensus 559 ~~~~~~~~~g~g~~~~~~------~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~ 632 (706)
+.++.++ +|.+.... ...+....|+.++++++..+..+|+++++++|+|+||.+++.++.++|++++++++
T Consensus 68 ~~~d~~g---~g~s~~~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~v~~~v~ 144 (223)
T 2o2g_A 68 LLIDLLT---QEEEEIDLRTRHLRFDIGLLASRLVGATDWLTHNPDTQHLKVGYFGASTGGGAALVAAAERPETVQAVVS 144 (223)
T ss_dssp EEECSSC---HHHHHHHHHHCSSTTCHHHHHHHHHHHHHHHHHCTTTTTSEEEEEEETHHHHHHHHHHHHCTTTEEEEEE
T ss_pred EEEcCCC---cCCCCccchhhcccCcHHHHHHHHHHHHHHHHhCcCCCCCcEEEEEeCccHHHHHHHHHhCCCceEEEEE
Confidence 9977653 33221110 23456688999999999998888999999999999999999999999999999999
Q ss_pred ccCCCCCCC-------CCcc--------chHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHhc
Q 005240 633 RSGSYNKTL-------TPFG--------FQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCL 696 (706)
Q Consensus 633 ~~~~~d~~~-------~~~~--------~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~~~~l~ 696 (706)
.+|..+... .|.. .-..+..+.+.+.+.+++++++|+++|.+..+....++.+.+.+||+++|+
T Consensus 145 ~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 223 (223)
T 2o2g_A 145 RGGRPDLAPSALPHVKAPTLLIVGGYDLPVIAMNEDALEQLQTSKRLVIIPRASHLFEEPGALTAVAQLASEWFMHYLR 223 (223)
T ss_dssp ESCCGGGCTTTGGGCCSCEEEEEETTCHHHHHHHHHHHHHCCSSEEEEEETTCCTTCCSTTHHHHHHHHHHHHHHHHCC
T ss_pred eCCCCCcCHHHHhcCCCCEEEEEccccCCCCHHHHHHHHhhCCCeEEEEeCCCCcccCChHHHHHHHHHHHHHHHHhcC
Confidence 998765331 1211 112356677778788899999999999987656678899999999999874
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.9e-16 Score=163.70 Aligned_cols=244 Identities=16% Similarity=0.200 Sum_probs=150.7
Q ss_pred ccceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCc
Q 005240 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (706)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~ 83 (706)
...|++.+++. |+.+++ ..+..|+|||||++|||++... ..+..+||++++++++.++++..+.
T Consensus 42 ~~~l~~~d~~~----~~~~~l------~~~~~~~~SpDg~~la~~~~~~-----~~~~~~l~~~~~~~g~~~~l~~~~~- 105 (347)
T 2gop_A 42 ENTIVIENLKN----NARRFI------ENATMPRISPDGKKIAFMRANE-----EKKVSEIWVADLETLSSKKILEAKN- 105 (347)
T ss_dssp EEEEEEEETTT----CCEEEE------ESCEEEEECTTSSEEEEEEEET-----TTTEEEEEEEETTTTEEEEEEEESE-
T ss_pred cceEEEEeCCC----CceEEc------ccCCCeEECCCCCEEEEEEecc-----CCCcceEEEEECCCCceEEEEcCCC-
Confidence 46789999976 887777 2477899999999999987531 1256789999999999998875432
Q ss_pred cccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEc
Q 005240 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (706)
Q Consensus 84 ~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~ 163 (706)
+..+.|||||+.|+|.+....... .... ...+.+..++..+......+||+++
T Consensus 106 -----~~~~~wspdg~~l~~~~~~~~~~~----------------~~~~------~~~~~~~~~g~~~~~~~~~~l~~~d 158 (347)
T 2gop_A 106 -----IRSLEWNEDSRKLLIVGFKRREDE----------------DFIF------EDDVPAWFDDLGFFDGEKTTFWIFD 158 (347)
T ss_dssp -----EEEEEECTTSSEEEEEEECCCC-------------------------------CCCC---------CEEEEEEEE
T ss_pred -----ccceeECCCCCEEEEEEccCCCcC----------------CcEE------EcccceeecCcccccCccceEEEEE
Confidence 578899999999999864311000 0000 0111222232222222347899999
Q ss_pred c-CCCc-eecCCCceEeeeeeCCCCcEEEEEeeccCcccccccccc-cceEEEEecCCCeeEEcccCCCCCCCCcccCcc
Q 005240 164 L-DGTA-KDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARF-SQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240 (706)
Q Consensus 164 l-~g~~-~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~ 240 (706)
+ +|+. +.++.. .+..+.||||| |+|+........ ... ..+|++++ +++.+.|+.. ..
T Consensus 159 ~~~~~~~~~l~~~-~~~~~~~spdg--~~~~~~~~~~~~----~~~~~~~l~~~d--~~~~~~l~~~-~~---------- 218 (347)
T 2gop_A 159 TESEEVIEEFEKP-RFSSGIWHRDK--IVVNVPHREIIP----QYFKFWDIYIWE--DGKEEKMFEK-VS---------- 218 (347)
T ss_dssp TTTTEEEEEEEEE-TTCEEEEETTE--EEEEEECCCSSC----CSSCCEEEEEEE--TTEEEEEEEE-ES----------
T ss_pred CCCCeEEeeecCC-CcccccCCCCe--EEEEEecccccc----cccccccEEEeC--CCceEEeccC-cc----------
Confidence 9 4566 667653 56788999999 777664432100 001 24788888 6667777653 11
Q ss_pred CCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeec-cccccc-ceecCCCceEEEEee
Q 005240 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL-DLRFRS-VSWCDDSLALVNETW 318 (706)
Q Consensus 241 ~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~-~~~~~~-~~wspDg~~l~~~~~ 318 (706)
...+||||+. |++........ ......|+++| +++.+.++.. ...+.. +.|+ || +++...
T Consensus 219 -----~~~~spdg~~-l~~~~~~~~~~----~~~~~~l~~~d-----~~~~~~l~~~~~~~~~~~~~~s-dg--~~~~~~ 280 (347)
T 2gop_A 219 -----FYAVDSDGER-ILLYGKPEKKY----MSEHNKLYIYD-----GKEVMGILDEVDRGVGQAKIKD-GK--VYFTLF 280 (347)
T ss_dssp -----EEEEEECSSC-EEEEECCSSSC----CCSSCEEEEEC-----SSCEEESSTTCCSEEEEEEEET-TE--EEEEEE
T ss_pred -----eeeECCCCCE-EEEEEccccCC----ccccceEEEEC-----CCceEeccccCCcccCCccEEc-Cc--EEEEEe
Confidence 1245999998 88775432110 01223588876 3556666543 455665 8999 88 555543
Q ss_pred ccccceEEEEEc
Q 005240 319 YKTSQTRTWLVC 330 (706)
Q Consensus 319 ~~~~~~~l~~~d 330 (706)
.. +..+|| ++
T Consensus 281 ~~-~~~~l~-~~ 290 (347)
T 2gop_A 281 EE-GSVNLY-IW 290 (347)
T ss_dssp ET-TEEEEE-EE
T ss_pred cC-CcEEEE-Ec
Confidence 33 567899 88
|
| >1jjf_A Xylanase Z, endo-1,4-beta-xylanase Z, 1,4-beta-D-xylan; feruloyl esterase, ferulic acid esterase, FAE_XYNZ, XYNZ, structural genomics; 1.75A {Clostridium thermocellum} SCOP: c.69.1.2 PDB: 1jt2_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=2.2e-16 Score=158.28 Aligned_cols=201 Identities=16% Similarity=0.133 Sum_probs=140.2
Q ss_pred CCceEEEEEEcc-CCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHC---
Q 005240 479 SLQKEMIKYQRK-DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLAR--- 554 (706)
Q Consensus 479 ~~~~~~~~~~~~-dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--- 554 (706)
..+.+.+++.+. +|.++..++|+|+++++.+ ++|+||++||++.. ...|..........+..|++.
T Consensus 29 ~g~~~~~~~~s~~~~~~~~~~v~~P~~~~~~~--~~P~vv~lHG~g~~--------~~~~~~~~~~~~~~~~~l~~~g~~ 98 (268)
T 1jjf_A 29 RGQVVNISYFSTATNSTRPARVYLPPGYSKDK--KYSVLYLLHGIGGS--------ENDWFEGGGRANVIADNLIAEGKI 98 (268)
T ss_dssp CCEEEEEEEEETTTTEEEEEEEEECTTCCTTS--CBCEEEEECCTTCC--------TTTTTTTTTCHHHHHHHHHHTTSS
T ss_pred CceEEEEEEeccccCCceEEEEEeCCCCCCCC--CccEEEEECCCCCC--------cchhhhccccHHHHHHHHHHcCCC
Confidence 346778888764 6789999999999876533 58999999998531 112221111111235667776
Q ss_pred -CeEEEEcCCCCcCCCCCCCCchhhHHHHHHH-HHHHHHHHHHcCCC--CCCcEEEEEechHHHHHHHHHHhCCCceeEE
Q 005240 555 -RFAVLAGPSIPIIGEGDKLPNDRFVEQLVSS-AEAAVEEVVRRGVA--DPSRIAVGGHSYGAFMTAHLLAHAPHLFCCG 630 (706)
Q Consensus 555 -G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~D-~~~~~~~l~~~~~i--d~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~ 630 (706)
||+|+.+++++. +.+ . ...+ .....+ +..+++++.++..+ |++||+|+|+|+||++|+.++.++|++|+++
T Consensus 99 ~~~~vv~~d~~~~-~~~--~-~~~~-~~~~~~~~~~~~~~l~~~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~ 173 (268)
T 1jjf_A 99 KPLIIVTPNTNAA-GPG--I-ADGY-ENFTKDLLNSLIPYIESNYSVYTDREHRAIAGLSMGGGQSFNIGLTNLDKFAYI 173 (268)
T ss_dssp CCCEEEEECCCCC-CTT--C-SCHH-HHHHHHHHHTHHHHHHHHSCBCCSGGGEEEEEETHHHHHHHHHHHTCTTTCSEE
T ss_pred CCEEEEEeCCCCC-Ccc--c-cccH-HHHHHHHHHHHHHHHHhhcCCCCCCCceEEEEECHHHHHHHHHHHhCchhhhhe
Confidence 599999777643 211 1 1122 222333 44567777665444 8999999999999999999999999999999
Q ss_pred EeccCCCCCCC---------------CC-ccc----------hHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHH
Q 005240 631 IARSGSYNKTL---------------TP-FGF----------QAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVI 684 (706)
Q Consensus 631 v~~~~~~d~~~---------------~~-~~~----------~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~ 684 (706)
++.+|..++.. .| ... ..++++++|++.++++++++|||++|.+. .+...+
T Consensus 174 v~~s~~~~~~~~~~~~~~~~~~~~~~~pp~li~~G~~D~~v~~~~~~~~~l~~~g~~~~~~~~~g~~H~~~---~~~~~~ 250 (268)
T 1jjf_A 174 GPISAAPNTYPNERLFPDGGKAAREKLKLLFIACGTNDSLIGFGQRVHEYCVANNINHVYWLIQGGGHDFN---VWKPGL 250 (268)
T ss_dssp EEESCCTTSCCHHHHCTTTTHHHHHHCSEEEEEEETTCTTHHHHHHHHHHHHHTTCCCEEEEETTCCSSHH---HHHHHH
T ss_pred EEeCCCCCCCchhhhcCcchhhhhhcCceEEEEecCCCCCccHHHHHHHHHHHCCCceEEEEcCCCCcCHh---HHHHHH
Confidence 99999765421 11 110 23479999999999999999999999874 244667
Q ss_pred HHHHHHHHHHhcc
Q 005240 685 WETDRWLQKYCLS 697 (706)
Q Consensus 685 ~~~~~f~~~~l~~ 697 (706)
..+++||.++...
T Consensus 251 ~~~~~~l~~~~~~ 263 (268)
T 1jjf_A 251 WNFLQMADEAGLT 263 (268)
T ss_dssp HHHHHHHHHHTTT
T ss_pred HHHHHHHHhcCcc
Confidence 8899999987443
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.73 E-value=7.5e-17 Score=180.91 Aligned_cols=219 Identities=11% Similarity=0.030 Sum_probs=149.3
Q ss_pred ceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEc--CCCceeecccCCCc
Q 005240 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADA--ETGEAKPLFESPDI 83 (706)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~--~~g~~~~lt~~~~~ 83 (706)
++.|++++. |+.++++.... ..+..|.|||| +|+|++..+ .++....||.+++ +++.. +++....
T Consensus 45 ~~~lw~~~~----g~~~~lt~~~~-~~~~~~~~spd--~~l~~~~~~----~g~~~~~l~~~~~~~~g~~~-~l~~~~~- 111 (582)
T 3o4h_A 45 SVNAYLYDG----GETVKLNREPI-NSVLDPHYGVG--RVILVRDVS----KGAEQHALFKVNTSRPGEEQ-RLEAVKP- 111 (582)
T ss_dssp EEEEEEEET----TEEEECCSSCC-SEECEECTTCS--EEEEEEECS----TTSCCEEEEEEETTSTTCCE-ECTTSCS-
T ss_pred ceeEEEEcC----CCcEeeecccc-cccccccCCCC--eEEEEeccC----CCCcceEEEEEeccCCCccc-cccCCCC-
Confidence 355666755 88888874332 25889999999 688877521 1134568999998 65554 6765443
Q ss_pred cccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEc
Q 005240 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (706)
Q Consensus 84 ~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~ 163 (706)
.....|||||+.+++.+... ..+.+++
T Consensus 112 -----~~~~~~s~dg~~~~~~s~~~------------------------------------------------~~~~l~d 138 (582)
T 3o4h_A 112 -----MRILSGVDTGEAVVFTGATE------------------------------------------------DRVALYA 138 (582)
T ss_dssp -----BEEEEEEECSSCEEEEEECS------------------------------------------------SCEEEEE
T ss_pred -----ceeeeeCCCCCeEEEEecCC------------------------------------------------CCceEEE
Confidence 34669999998877764311 2233558
Q ss_pred c-CCCceecCCCceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCC
Q 005240 164 L-DGTAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVRE 242 (706)
Q Consensus 164 l-~g~~~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~ 242 (706)
+ +|+.++++.... ..++|||||++|++.+..... ...|++||+++++.++|+.....
T Consensus 139 ~~~g~~~~l~~~~~-~~~~~spDG~~la~~~~~~~~---------~~~i~~~d~~~g~~~~l~~~~~~------------ 196 (582)
T 3o4h_A 139 LDGGGLRELARLPG-FGFVSDIRGDLIAGLGFFGGG---------RVSLFTSNLSSGGLRVFDSGEGS------------ 196 (582)
T ss_dssp EETTEEEEEEEESS-CEEEEEEETTEEEEEEEEETT---------EEEEEEEETTTCCCEEECCSSCE------------
T ss_pred ccCCcEEEeecCCC-ceEEECCCCCEEEEEEEcCCC---------CeEEEEEcCCCCCceEeecCCCc------------
Confidence 8 557777765533 788999999999988766432 24799999998888888765432
Q ss_pred CCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccce--------ecCCCceEE
Q 005240 243 GMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVS--------WCDDSLALV 314 (706)
Q Consensus 243 g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~--------wspDg~~l~ 314 (706)
...++|||||+. |+ ....++ ...|+++|+ ++++.+.++.....+..+. ||||| .++
T Consensus 197 -~~~~~~SpDG~~-l~-~~~~~~---------~~~i~~~d~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg-~~~ 260 (582)
T 3o4h_A 197 -FSSASISPGMKV-TA-GLETAR---------EARLVTVDP---RDGSVEDLELPSKDFSSYRPTAITWLGYLPDG-RLA 260 (582)
T ss_dssp -EEEEEECTTSCE-EE-EEECSS---------CEEEEEECT---TTCCEEECCCSCSHHHHHCCSEEEEEEECTTS-CEE
T ss_pred -cccceECCCCCE-EE-EccCCC---------eeEEEEEcC---CCCcEEEccCCCcChhhhhhccccceeEcCCC-cEE
Confidence 236799999997 66 322211 125999999 7777774445566677788 99999 666
Q ss_pred EEeeccccceEEEEE
Q 005240 315 NETWYKTSQTRTWLV 329 (706)
Q Consensus 315 ~~~~~~~~~~~l~~~ 329 (706)
+....+ +..+||.+
T Consensus 261 ~~~~~~-g~~~l~~~ 274 (582)
T 3o4h_A 261 VVARRE-GRSAVFID 274 (582)
T ss_dssp EEEEET-TEEEEEET
T ss_pred EEEEcC-CcEEEEEE
Confidence 655443 45667766
|
| >3qh4_A Esterase LIPW; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, tuberculosis, O LIPW, heroin esterase; 1.75A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=99.73 E-value=3e-17 Score=168.75 Aligned_cols=193 Identities=18% Similarity=0.167 Sum_probs=146.2
Q ss_pred CCCceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHH-HCCe
Q 005240 478 ASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFL-ARRF 556 (706)
Q Consensus 478 ~~~~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~G~ 556 (706)
..+..+.+++.+.||.+|++++|.|.+ ++.|+||++|||++.. ++... ....+..|+ +.||
T Consensus 56 ~~~~~~~~~i~~~~G~~i~~~~~~P~~------~~~p~vv~~HGgG~~~--------g~~~~----~~~~~~~la~~~g~ 117 (317)
T 3qh4_A 56 AGVAVADDVVTGEAGRPVPVRIYRAAP------TPAPVVVYCHAGGFAL--------GNLDT----DHRQCLELARRARC 117 (317)
T ss_dssp HCCEEEEEEEECTTSCEEEEEEEECSC------SSEEEEEEECCSTTTS--------CCTTT----THHHHHHHHHHHTS
T ss_pred CcceEEEEEecCCCCCeEEEEEEecCC------CCCcEEEEECCCcCcc--------CChHH----HHHHHHHHHHHcCC
Confidence 346788999999999999999999975 2479999999986532 11111 123455666 4699
Q ss_pred EEEEcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEEechHHHHHHHHHHhCCC----ceeE
Q 005240 557 AVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRR---GVADPSRIAVGGHSYGAFMTAHLLAHAPH----LFCC 629 (706)
Q Consensus 557 ~v~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~---~~id~~~i~i~G~S~GG~~a~~~~~~~p~----~~~a 629 (706)
.|+.++++...++. ....++|+.++++|+.++ ..+|++||+|+|+|+||++|+.++.+.++ .+++
T Consensus 118 ~vv~~dyr~~p~~~--------~p~~~~D~~~a~~~l~~~~~~~~~d~~ri~l~G~S~GG~lA~~~a~~~~~~~~~~~~~ 189 (317)
T 3qh4_A 118 AVVSVDYRLAPEHP--------YPAALHDAIEVLTWVVGNATRLGFDARRLAVAGSSAGATLAAGLAHGAADGSLPPVIF 189 (317)
T ss_dssp EEEEECCCCTTTSC--------TTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTSSCCCCE
T ss_pred EEEEecCCCCCCCC--------CchHHHHHHHHHHHHHhhHHhhCCCcceEEEEEECHHHHHHHHHHHHHHhcCCCCeeE
Confidence 99998887543321 134577888999999885 34789999999999999999999987654 4999
Q ss_pred EEeccCCCCCCCC----------------------------------------------Ccc--------c--hHHHHHH
Q 005240 630 GIARSGSYNKTLT----------------------------------------------PFG--------F--QAERFFD 653 (706)
Q Consensus 630 ~v~~~~~~d~~~~----------------------------------------------~~~--------~--~~~~~~~ 653 (706)
+++.+|+.+.... |.. + +..++.+
T Consensus 190 ~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~lpP~li~~G~~D~~~~~~~~~a~ 269 (317)
T 3qh4_A 190 QLLHQPVLDDRPTASRSEFRATPAFDGEAASLMWRHYLAGQTPSPESVPGRRGQLAGLPATLITCGEIDPFRDEVLDYAQ 269 (317)
T ss_dssp EEEESCCCCSSCCHHHHHTTTCSSSCHHHHHHHHHHHHTTCCCCTTTCGGGCSCCTTCCCEEEEEEEESTTHHHHHHHHH
T ss_pred EEEECceecCCCCcCHHHhcCCCCcCHHHHHHHHHHhcCCCCCCcccCCCcccccCCCCceeEEecCcCCCchhHHHHHH
Confidence 9999998765310 000 0 2248999
Q ss_pred HHHhCCCcEEEEEeCCCCccCCC----cccHHHHHHHHHHHHHHHhc
Q 005240 654 ALKGHGALSRLVLLPFEHHVYAA----RENVMHVIWETDRWLQKYCL 696 (706)
Q Consensus 654 ~l~~~~~~~~~~~~~~~~H~~~~----~~~~~~~~~~~~~f~~~~l~ 696 (706)
+|++.++++++++|||++|.|.. .....+..+.+.+||+++|.
T Consensus 270 ~l~~~g~~~~l~~~~g~~H~f~~~~~~~~~~~~~~~~~~~~l~~~l~ 316 (317)
T 3qh4_A 270 RLLGAGVSTELHIFPRACHGFDSLLPEWTTSQRLFAMQGHALADAFY 316 (317)
T ss_dssp HHHHTTCCEEEEEEEEEETTHHHHCTTSHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHcCCCEEEEEeCCCccchhhhcCCchHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999998742 23457889999999999884
|
| >3k2i_A Acyl-coenzyme A thioesterase 4; alpha/beta hydrolase fold seven-stranded beta-sandwich, structural genomics, structural genomics consortium, SGC; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.2e-16 Score=171.27 Aligned_cols=178 Identities=19% Similarity=0.197 Sum_probs=131.4
Q ss_pred EEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCCC
Q 005240 494 PLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKL 573 (706)
Q Consensus 494 ~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~ 573 (706)
.+.++++.|++ .++.|+||++||++.. . ....+..|+++||.|+.++++|..+.....
T Consensus 144 ~l~~~l~~P~~-----~~~~P~Vv~~hG~~~~--------------~---~~~~a~~La~~Gy~V~a~D~rG~g~~~~~~ 201 (422)
T 3k2i_A 144 RVRATLFLPPG-----PGPFPGIIDIFGIGGG--------------L---LEYRASLLAGHGFATLALAYYNFEDLPNNM 201 (422)
T ss_dssp TEEEEEEECSS-----SCCBCEEEEECCTTCS--------------C---CCHHHHHHHTTTCEEEEEECSSSTTSCSSC
T ss_pred cEEEEEEcCCC-----CCCcCEEEEEcCCCcc--------------h---hHHHHHHHHhCCCEEEEEccCCCCCCCCCc
Confidence 69999999986 2358999999997421 0 123577889999999998887643322221
Q ss_pred CchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCCCCC------------
Q 005240 574 PNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTL------------ 641 (706)
Q Consensus 574 ~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d~~~------------ 641 (706)
.. ..++|+.++++||.++..+|+.+|+|+|+||||++|+.++.++|+ ++++|+.+|......
T Consensus 202 ~~-----~~~~d~~~~~~~l~~~~~v~~~~i~l~G~S~GG~lAl~~a~~~p~-v~a~V~~~~~~~~~~~~~~~~~~~~~~ 275 (422)
T 3k2i_A 202 DN-----ISLEYFEEAVCYMLQHPQVKGPGIGLLGISLGADICLSMASFLKN-VSATVSINGSGISGNTAINYKHSSIPP 275 (422)
T ss_dssp SC-----EETHHHHHHHHHHHTSTTBCCSSEEEEEETHHHHHHHHHHHHCSS-EEEEEEESCCSBCCSSCEEETTEEECC
T ss_pred cc-----CCHHHHHHHHHHHHhCcCcCCCCEEEEEECHHHHHHHHHHhhCcC-ccEEEEEcCcccccCCchhhcCCcCCC
Confidence 11 126788899999998888899999999999999999999999987 999999887652100
Q ss_pred -----------------------------------------CCcc---------c----hHHHHHHHHHhCCCc-EEEEE
Q 005240 642 -----------------------------------------TPFG---------F----QAERFFDALKGHGAL-SRLVL 666 (706)
Q Consensus 642 -----------------------------------------~~~~---------~----~~~~~~~~l~~~~~~-~~~~~ 666 (706)
.|.. . ..+++.++|++.+++ +++++
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~~l~~~g~~~~~l~~ 355 (422)
T 3k2i_A 276 LGYDLRRIKVAFSGLVDIVDIRNALVGGYKNPSMIPIEKAQGPILLIVGQDDHNWRSELYAQTVSERLQAHGKEKPQIIC 355 (422)
T ss_dssp CCBCGGGCEECTTSCEECTTCBCCCTTGGGSTTBCCGGGCCSCEEEEEETTCSSSCHHHHHHHHHHHHHHTTCCCCEEEE
T ss_pred cccchhhcccCcchhHHHHHHHhhhhhcccccccccHHHCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 0100 0 013678889999988 99999
Q ss_pred eCCCCccCCCc---------------------------ccHHHHHHHHHHHHHHHhccCC
Q 005240 667 LPFEHHVYAAR---------------------------ENVMHVIWETDRWLQKYCLSNT 699 (706)
Q Consensus 667 ~~~~~H~~~~~---------------------------~~~~~~~~~~~~f~~~~l~~~~ 699 (706)
||+++|.+..+ ....+.++.+++||++||....
T Consensus 356 ~~gagH~~~~p~~p~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~i~~Fl~~~L~~~~ 415 (422)
T 3k2i_A 356 YPGTGHYIEPPYFPLCPASLHRLLNKHVIWGGEPRAHSKAQEDAWKQILAFFCKHLGGTQ 415 (422)
T ss_dssp ETTCCSCCCSTTCCCCCEEEETTTTEEEECCCCHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred ECCCCCEECCCCCCcchhhhccccCceEeeCCccHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 99999998322 3367899999999999997644
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.7e-15 Score=153.03 Aligned_cols=280 Identities=9% Similarity=0.063 Sum_probs=190.4
Q ss_pred eeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCC
Q 005240 36 VSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKK 115 (706)
Q Consensus 36 ~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~ 115 (706)
-.+++||++|+|... .+...||.++.+++..++|+... + -.++++|++|+|..........
T Consensus 19 g~~~~~g~~iy~~n~--------~d~~~ly~~~~dg~~~~~l~~~~-------~--~~i~~~g~~Iyy~~~~~~~~~~-- 79 (302)
T 3s25_A 19 GLFCESDGEVFFSNT--------NDNGRLYAMNIDGSNIHKLSNDT-------A--MYINADKNYVYYVRNNNQKITS-- 79 (302)
T ss_dssp TCEEEETTEEEEEEG--------GGTTEEEEEETTSCSCEEEEEEE-------E--EEEEECSSEEEEEEECC-------
T ss_pred eEEEEeCCEEEEEeC--------CCCceEEEEcCCCCCCEEccCCc-------e--eeEEEcCCEEEEEECCCCcccc--
Confidence 357899999999764 23478999999999999997432 1 2568999999998653221100
Q ss_pred CCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCC-CceecCCCceEeeeeeCCCCcEEEEEee
Q 005240 116 TMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TAKDFGTPAVYTAVEPSPDQKYVLITSM 194 (706)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g-~~~~lt~~~~~~~~~~SpDG~~i~~~~~ 194 (706)
. .+.......||+++++| +.++|+... ...|+|+|++|+|+..
T Consensus 80 --------------~-------------------~~~~~n~~~Iy~i~~dg~~~~~l~~~~---~~~~s~~g~~Iy~~~~ 123 (302)
T 3s25_A 80 --------------Q-------------------TFFSYDRNSLCRIKRNGHGSTVLDPDP---CIYASLIGNYIYYLHY 123 (302)
T ss_dssp ----------------------------------CCSSCCSEEEEEEETTSCCCEEEECSC---EEEEEEETTEEEEEEE
T ss_pred --------------c-------------------ceeccCCCeEEEEeCCCCcceEeecCC---ccEEEEeCCEEEEEee
Confidence 0 00001347899999988 667776552 2378999999999872
Q ss_pred -ccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccC
Q 005240 195 -HRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVS 273 (706)
Q Consensus 195 -~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~ 273 (706)
... ...|++.+++|+..++|+.... ..++++|+. |||+.. +
T Consensus 124 ~~~~----------~~~Iy~~~~dGs~~~~lt~~~~-----------------~~~~~~g~~-iy~t~~---g------- 165 (302)
T 3s25_A 124 DTQT----------ATSLYRIRIDGEEKKKIKNHYL-----------------FTCNTSDRY-FYYNNP---K------- 165 (302)
T ss_dssp SSSS----------CEEEEEEETTSCCCEEEESSCC-----------------CCSEEETTE-EEEECT---T-------
T ss_pred cCCC----------CceEEEEECCCCCeEEEeCCCc-----------------eEeeEECCE-EEEEeC---C-------
Confidence 211 3589999999998888887642 247889988 998843 1
Q ss_pred ccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCcccccccCC
Q 005240 274 PRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDP 353 (706)
Q Consensus 274 ~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~ 353 (706)
+..|+++++ +++..++|..... ..+ ++|++..|+|..+.. ..+|+++++++. ..+.|++...
T Consensus 166 -~~~Iy~~~l---~g~~~~~l~~~~~--~~~-~~P~g~~iy~t~~~~--~~~I~~~~ldG~--~~~~Lt~~~~------- 227 (302)
T 3s25_A 166 -NGQLYRYDT---ASQSEALFYDCNC--YKP-VVLDDTNVYYMDVNR--DNAIVHVNINNP--NPVVLTEANI------- 227 (302)
T ss_dssp -TCCEEEEET---TTTEEEEEECSCE--EEE-EEEETTEEEEEEGGG--TTEEEEECSSSC--CCEECSCSCE-------
T ss_pred -CceEEEEEC---CCCCEEEEeCCCc--cce-eeecCCEEEEEEcCC--CcEEEEEECCCC--CeEEEeCCCc-------
Confidence 125899998 7777777754322 234 459999999976432 268999999994 4566654322
Q ss_pred CCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeeecccchhhhhhhhhhccCCCcee
Q 005240 354 GSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEED 433 (706)
Q Consensus 354 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 433 (706)
++++|+|++|+|.... ....|++++++....++|...+. ..
T Consensus 228 ----~~~~~~g~~Iy~~~~~-------------------~~~~i~~~~~DG~~r~~l~~~~~----------------~~ 268 (302)
T 3s25_A 228 ----EHYNVYGSLIFYQRGG-------------------DNPALCVVKNDGTGFKELAKGEF----------------CN 268 (302)
T ss_dssp ----EEEEEETTEEEEEECS-------------------SSCEEEEEETTSCCCEEEEESCE----------------EE
T ss_pred ----ceEEECCCEEEEEECC-------------------CCcEEEEEECCCCccEEeeCCcc----------------ce
Confidence 4478999999887521 12468888887666666654321 24
Q ss_pred cccCCCEEEEEEecCCCCcEEEEEECCCCceeEee
Q 005240 434 INLNQLKILTSKESKTEITQYHILSWPLKKSSQIT 468 (706)
Q Consensus 434 ~s~Dg~~l~~~~~~~~~p~~v~~~~~~~~~~~~lt 468 (706)
+++.+.+|+|+..... .|+++.+.+...++|.
T Consensus 269 i~i~~d~Iy~td~~~~---~i~~~~~dGs~~~~l~ 300 (302)
T 3s25_A 269 INVTSQYVYFTDFVSN---KEYCTSTQNPDTIKAL 300 (302)
T ss_dssp EEECSSEEEEEETTTC---CEEEEESSSCCSCEEC
T ss_pred EEEeCCEEEEEECCCC---eEEEEECCCCCceEec
Confidence 5667889999865433 3888887666556654
|
| >2jbw_A Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine hydrolase; alpha/beta hydrolase, META-cleavage pathway; 2.1A {Arthrobacter nicotinovorans} SCOP: c.69.1.41 | Back alignment and structure |
|---|
Probab=99.71 E-value=2.3e-16 Score=167.18 Aligned_cols=188 Identities=16% Similarity=0.147 Sum_probs=137.5
Q ss_pred CceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEE
Q 005240 480 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 559 (706)
Q Consensus 480 ~~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~ 559 (706)
...+.+.++. ||..|+++++.|++. ++.|+||++||.+.. . ...+...+.|+++||.|+
T Consensus 125 ~~~~~v~~~~-dg~~i~~~l~~p~~~-----~~~P~vl~~hG~~~~--------------~-~~~~~~~~~l~~~G~~v~ 183 (386)
T 2jbw_A 125 PPAERHELVV-DGIPMPVYVRIPEGP-----GPHPAVIMLGGLEST--------------K-EESFQMENLVLDRGMATA 183 (386)
T ss_dssp SCEEEEEEEE-TTEEEEEEEECCSSS-----CCEEEEEEECCSSCC--------------T-TTTHHHHHHHHHTTCEEE
T ss_pred CCeEEEEEEe-CCEEEEEEEEcCCCC-----CCCCEEEEeCCCCcc--------------H-HHHHHHHHHHHhCCCEEE
Confidence 5788899988 899999999999862 358999999886311 1 111234678889999999
Q ss_pred EcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCCC
Q 005240 560 AGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNK 639 (706)
Q Consensus 560 ~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d~ 639 (706)
..+.+|. |.+............++.+++++|.+++.+|+++|+|+|+|+||++++.++.+ |++|+|+|+. |+.+.
T Consensus 184 ~~d~rG~---G~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~l~G~S~GG~la~~~a~~-~~~~~a~v~~-~~~~~ 258 (386)
T 2jbw_A 184 TFDGPGQ---GEMFEYKRIAGDYEKYTSAVVDLLTKLEAIRNDAIGVLGRSLGGNYALKSAAC-EPRLAACISW-GGFSD 258 (386)
T ss_dssp EECCTTS---GGGTTTCCSCSCHHHHHHHHHHHHHHCTTEEEEEEEEEEETHHHHHHHHHHHH-CTTCCEEEEE-SCCSC
T ss_pred EECCCCC---CCCCCCCCCCccHHHHHHHHHHHHHhCCCcCcccEEEEEEChHHHHHHHHHcC-CcceeEEEEe-ccCCh
Confidence 9887753 33311111112234567788999999888999999999999999999999999 7999999999 88764
Q ss_pred CCCC--------------------cc-------------------------------c---hHHHHHHHH-HhCCCcEEE
Q 005240 640 TLTP--------------------FG-------------------------------F---QAERFFDAL-KGHGALSRL 664 (706)
Q Consensus 640 ~~~~--------------------~~-------------------------------~---~~~~~~~~l-~~~~~~~~~ 664 (706)
.... .. . +..+++++| .. ++++
T Consensus 259 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~P~Lii~G~~D~v~~~~~~~l~~~l~~~---~~~~ 335 (386)
T 2jbw_A 259 LDYWDLETPLTKESWKYVSKVDTLEEARLHVHAALETRDVLSQIACPTYILHGVHDEVPLSFVDTVLELVPAE---HLNL 335 (386)
T ss_dssp STTGGGSCHHHHHHHHHHTTCSSHHHHHHHHHHHTCCTTTGGGCCSCEEEEEETTSSSCTHHHHHHHHHSCGG---GEEE
T ss_pred HHHHHhccHHHHHHHHHHhCCCCHHHHHHHHHHhCChhhhhcccCCCEEEEECCCCCCCHHHHHHHHHHhcCC---CcEE
Confidence 2100 00 0 111455555 32 7899
Q ss_pred EEeCCCCccCCCcccHHHHHHHHHHHHHHHhccC
Q 005240 665 VLLPFEHHVYAARENVMHVIWETDRWLQKYCLSN 698 (706)
Q Consensus 665 ~~~~~~~H~~~~~~~~~~~~~~~~~f~~~~l~~~ 698 (706)
++||+++|.+. ....+..+.+.+||+++|...
T Consensus 336 ~~~~~~gH~~~--~~~~~~~~~i~~fl~~~l~~~ 367 (386)
T 2jbw_A 336 VVEKDGDHCCH--NLGIRPRLEMADWLYDVLVAG 367 (386)
T ss_dssp EEETTCCGGGG--GGTTHHHHHHHHHHHHHHTSS
T ss_pred EEeCCCCcCCc--cchHHHHHHHHHHHHHhcCCc
Confidence 99999999763 356688999999999999754
|
| >3hlk_A Acyl-coenzyme A thioesterase 2, mitochondrial; alpha/beta hydrolase, alternative splicing, hydrolase, mitochondrion, polymorphism, serine esterase; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.2e-16 Score=172.13 Aligned_cols=177 Identities=15% Similarity=0.204 Sum_probs=131.5
Q ss_pred EEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCCC
Q 005240 494 PLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKL 573 (706)
Q Consensus 494 ~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~ 573 (706)
.+.+++|.|++ .++.|+||++||++.. . ....+..|+++||.|+.+++++..+.....
T Consensus 160 ~l~~~l~~P~~-----~~~~P~Vv~lhG~~~~--------------~---~~~~a~~La~~Gy~Vla~D~rG~~~~~~~~ 217 (446)
T 3hlk_A 160 RVRGTLFLPPE-----PGPFPGIVDMFGTGGG--------------L---LEYRASLLAGKGFAVMALAYYNYEDLPKTM 217 (446)
T ss_dssp TEEEEEEECSS-----SCCBCEEEEECCSSCS--------------C---CCHHHHHHHTTTCEEEEECCSSSTTSCSCC
T ss_pred eEEEEEEeCCC-----CCCCCEEEEECCCCcc--------------h---hhHHHHHHHhCCCEEEEeccCCCCCCCcch
Confidence 69999999975 2357999999997421 0 113478889999999998887643332221
Q ss_pred CchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCCCCC------------
Q 005240 574 PNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTL------------ 641 (706)
Q Consensus 574 ~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d~~~------------ 641 (706)
.. ..++|+.++++|+.++..+|+++|+|+|+||||++|+.++.++|+ ++++|+.+|......
T Consensus 218 ~~-----~~~~d~~~a~~~l~~~~~vd~~~i~l~G~S~GG~lAl~~A~~~p~-v~a~V~~~~~~~~~~~~~~~~~~~~~~ 291 (446)
T 3hlk_A 218 ET-----LHLEYFEEAMNYLLSHPEVKGPGVGLLGISKGGELCLSMASFLKG-ITAAVVINGSVANVGGTLRYKGETLPP 291 (446)
T ss_dssp SE-----EEHHHHHHHHHHHHTSTTBCCSSEEEEEETHHHHHHHHHHHHCSC-EEEEEEESCCSBCCSSEEEETTEEECC
T ss_pred hh-----CCHHHHHHHHHHHHhCCCCCCCCEEEEEECHHHHHHHHHHHhCCC-ceEEEEEcCcccccCCCccccCccCCc
Confidence 11 126788899999999888999999999999999999999999987 999999887542100
Q ss_pred -----------------------------------------CCcc---------ch----HHHHHHHHHhCCCc-EEEEE
Q 005240 642 -----------------------------------------TPFG---------FQ----AERFFDALKGHGAL-SRLVL 666 (706)
Q Consensus 642 -----------------------------------------~~~~---------~~----~~~~~~~l~~~~~~-~~~~~ 666 (706)
.|.. .. .++++++|++.+++ +++++
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~~l~~~g~~~~~l~~ 371 (446)
T 3hlk_A 292 VGVNRNRIKVTKDGYADIVDVLNSPLEGPDQKSFIPVERAESTFLFLVGQDDHNWKSEFYANEACKRLQAHGRRKPQIIC 371 (446)
T ss_dssp CCBCGGGCEECSSSCEECTTCBCCTTSGGGGGGBCCGGGCCSEEEEEEETTCCSSCHHHHHHHHHHHHHHTTCCCCEEEE
T ss_pred cccchhccccccchHHHHHHHHhchhhccccccccCHHHCCCCEEEEEeCCCCCcChHHHHHHHHHHHHHcCCCCcEEEE
Confidence 0100 01 13788899999998 89999
Q ss_pred eCCCCccCCC---------------------------cccHHHHHHHHHHHHHHHhccC
Q 005240 667 LPFEHHVYAA---------------------------RENVMHVIWETDRWLQKYCLSN 698 (706)
Q Consensus 667 ~~~~~H~~~~---------------------------~~~~~~~~~~~~~f~~~~l~~~ 698 (706)
||+++|.+.. .....+.++++++||++||...
T Consensus 372 ~pgagH~~~~p~~P~~~~~~~~~~~~~~~~gG~~~~~~~a~~~~~~~i~~Fl~~~L~~~ 430 (446)
T 3hlk_A 372 YPETGHYIEPPYFPLCRASLHALVGSPIIWGGEPRAHAMAQVDAWKQLQTFFHKHLGGH 430 (446)
T ss_dssp ETTBCSCCCSTTCCCCCBC-------CBBCCBCHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred ECCCCCeECCCCCCCChhhcccccCceEeeCCccHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 9999999831 1125679999999999999753
|
| >2i3d_A AGR_C_3351P, hypothetical protein ATU1826; structural genomics, APC5865, hydrolase, PSI-2, protein STRU initiative; HET: MSE; 1.50A {Agrobacterium tumefaciens str} SCOP: c.69.1.36 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.3e-15 Score=150.71 Aligned_cols=196 Identities=18% Similarity=0.158 Sum_probs=139.8
Q ss_pred ceE--EEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEE
Q 005240 481 QKE--MIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAV 558 (706)
Q Consensus 481 ~~~--~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v 558 (706)
..| .+.+++.+| .+.++++.|.+ . +.|+||++||.+... +..... ....++..|+++||.|
T Consensus 20 ~~e~~~~~~~~~~g-~l~~~~~~p~~---~---~~p~vv~~HG~~~~~--------~~~~~~--~~~~~~~~l~~~G~~v 82 (249)
T 2i3d_A 20 QGHMPEVIFNGPAG-RLEGRYQPSKE---K---SAPIAIILHPHPQFG--------GTMNNQ--IVYQLFYLFQKRGFTT 82 (249)
T ss_dssp ----CEEEEEETTE-EEEEEEECCSS---T---TCCEEEEECCCGGGT--------CCTTSH--HHHHHHHHHHHTTCEE
T ss_pred cCceeEEEEECCCc-eEEEEEEcCCC---C---CCCEEEEECCCcccC--------CCccch--HHHHHHHHHHHCCCEE
Confidence 455 899999888 89999998854 1 368999999953210 010000 0124567788999999
Q ss_pred EEcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCC
Q 005240 559 LAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYN 638 (706)
Q Consensus 559 ~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d 638 (706)
+.++.+| +|.+..........++|+.++++++.++. .++++|+++|+|+||++++.++.++|+ ++++++.+|..+
T Consensus 83 ~~~d~~g---~G~s~~~~~~~~~~~~d~~~~i~~l~~~~-~~~~~i~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~ 157 (249)
T 2i3d_A 83 LRFNFRS---IGRSQGEFDHGAGELSDAASALDWVQSLH-PDSKSCWVAGYSFGAWIGMQLLMRRPE-IEGFMSIAPQPN 157 (249)
T ss_dssp EEECCTT---STTCCSCCCSSHHHHHHHHHHHHHHHHHC-TTCCCEEEEEETHHHHHHHHHHHHCTT-EEEEEEESCCTT
T ss_pred EEECCCC---CCCCCCCCCCccchHHHHHHHHHHHHHhC-CCCCeEEEEEECHHHHHHHHHHhcCCC-ccEEEEEcCchh
Confidence 9977763 44443322222233499999999998875 478899999999999999999999988 999999998765
Q ss_pred CCC--------CCcc---------c---hHHHHHHHHHh-CCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHhcc
Q 005240 639 KTL--------TPFG---------F---QAERFFDALKG-HGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCLS 697 (706)
Q Consensus 639 ~~~--------~~~~---------~---~~~~~~~~l~~-~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~~~~l~~ 697 (706)
... .|.. . ..+++++.+.. .+.+++++++|+++|.+. ....++.+.+.+||++++..
T Consensus 158 ~~~~~~~~~~~~P~lii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~H~~~--~~~~~~~~~i~~fl~~~l~~ 235 (249)
T 2i3d_A 158 TYDFSFLAPCPSSGLIINGDADKVAPEKDVNGLVEKLKTQKGILITHRTLPGANHFFN--GKVDELMGECEDYLDRRLNG 235 (249)
T ss_dssp TSCCTTCTTCCSCEEEEEETTCSSSCHHHHHHHHHHHTTSTTCCEEEEEETTCCTTCT--TCHHHHHHHHHHHHHHHHTT
T ss_pred hhhhhhhcccCCCEEEEEcCCCCCCCHHHHHHHHHHHhhccCCceeEEEECCCCcccc--cCHHHHHHHHHHHHHHhcCC
Confidence 321 1211 0 22367777765 456899999999999986 36778999999999999875
Q ss_pred CCC
Q 005240 698 NTS 700 (706)
Q Consensus 698 ~~~ 700 (706)
...
T Consensus 236 ~~~ 238 (249)
T 2i3d_A 236 ELV 238 (249)
T ss_dssp CSS
T ss_pred CCC
Confidence 443
|
| >3fcx_A FGH, esterase D, S-formylglutathione hydrolase; retinoblastoma, genetic marker, cytoplasm, cytoplasmic vesicle, polymorphism, serine esterase; 1.50A {Homo sapiens} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.71 E-value=5.4e-17 Score=163.91 Aligned_cols=198 Identities=18% Similarity=0.153 Sum_probs=134.1
Q ss_pred ceEEEEEEc-cCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEE
Q 005240 481 QKEMIKYQR-KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 559 (706)
Q Consensus 481 ~~~~~~~~~-~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~ 559 (706)
..+.+++.+ .+|.+++..+|+|++++. +++|+||++||++... ..|.... ...+.+++.||+|+
T Consensus 15 ~~~~~~~~s~~~~~~~~~~v~~P~~~~~---~~~p~vv~lHG~~~~~--------~~~~~~~----~~~~~~~~~g~~vv 79 (282)
T 3fcx_A 15 LQKVFEHDSVELNCKMKFAVYLPPKAET---GKCPALYWLSGLTCTE--------QNFISKS----GYHQSASEHGLVVI 79 (282)
T ss_dssp EEEEEEEEETTTTEEEEEEEEECGGGGT---SCEEEEEEECCTTCCS--------HHHHHHS----CCHHHHHHHTCEEE
T ss_pred cEEEEEEEchhcCCeeEEEEEcCCCCCC---CCCCEEEEEcCCCCCc--------cchhhcc----hHHHHhhcCCeEEE
Confidence 344555554 478899999999987543 2599999999975321 1111110 12466778999999
Q ss_pred EcCC--CCcCCCC----------CCCCc----hhhHH--HHHHHH-HHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHH
Q 005240 560 AGPS--IPIIGEG----------DKLPN----DRFVE--QLVSSA-EAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLL 620 (706)
Q Consensus 560 ~~~~--~~~~g~g----------~~~~~----~~~~~--~~~~D~-~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~ 620 (706)
.++. +|..+.| ..+.. ..+.. ....++ ..+++++.++..+|++||+|+|+|+||++|+.++
T Consensus 80 ~~d~~~rG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~i~l~G~S~GG~~a~~~a 159 (282)
T 3fcx_A 80 APDTSPRGCNIKGEDESWDFGTGAGFYVDATEDPWKTNYRMYSYVTEELPQLINANFPVDPQRMSIFGHSMGGHGALICA 159 (282)
T ss_dssp EECSCSSCCCC--------CCCCCCTTCBCCSTTHHHHCBHHHHHHTHHHHHHHHHSSEEEEEEEEEEETHHHHHHHHHH
T ss_pred EeccccCccccccccccccccCCcccccccCcccccchhhHHHHHHHHHHHHHHHHcCCCccceEEEEECchHHHHHHHH
Confidence 9776 4433211 11111 11111 112222 2445555545448999999999999999999999
Q ss_pred HhCCCceeEEEeccCCCCCCC-----------------------------------CCcc--------------chHHHH
Q 005240 621 AHAPHLFCCGIARSGSYNKTL-----------------------------------TPFG--------------FQAERF 651 (706)
Q Consensus 621 ~~~p~~~~a~v~~~~~~d~~~-----------------------------------~~~~--------------~~~~~~ 651 (706)
.++|++|+++++.+|..+... .|.. ...+++
T Consensus 160 ~~~p~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~li~~G~~D~~v~~~~~~~~~~ 239 (282)
T 3fcx_A 160 LKNPGKYKSVSAFAPICNPVLCPWGKKAFSGYLGTDQSKWKAYDATHLVKSYPGSQLDILIDQGKDDQFLLDGQLLPDNF 239 (282)
T ss_dssp HTSTTTSSCEEEESCCCCGGGSHHHHHHHHHHHC---CCGGGGCHHHHHTTCC---CCEEEEEETTCHHHHTTSSCHHHH
T ss_pred HhCcccceEEEEeCCccCcccCchhHHHHHHhcCCchhhhhhcCHHHHHHhcccCCCcEEEEcCCCCcccccchhhHHHH
Confidence 999999999999999765221 0100 012378
Q ss_pred HHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHhc
Q 005240 652 FDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCL 696 (706)
Q Consensus 652 ~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~~~~l~ 696 (706)
.++|++.++++++++|||++|.|.. ......+.++|+.++|+
T Consensus 240 ~~~l~~~g~~~~~~~~~g~~H~~~~---~~~~~~~~~~~~~~~l~ 281 (282)
T 3fcx_A 240 IAACTEKKIPVVFRLQEDYDHSYYF---IATFITDHIRHHAKYLN 281 (282)
T ss_dssp HHHHHHTTCCEEEEEETTCCSSHHH---HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCceEEEECCCCCcCHHH---HHhhhHHHHHHHHHhhc
Confidence 9999999999999999999998753 45677888999999885
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=2.2e-15 Score=172.22 Aligned_cols=272 Identities=14% Similarity=0.126 Sum_probs=173.5
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~ 111 (706)
.+..++|||||++|||+.+. .++....|+++|+++|+..+.+.... ....++|| ||+.|+|.+......
T Consensus 130 ~l~~~~~SpDg~~lAy~~~~-----~G~~~~~i~v~dl~tg~~~~~~~~~~-----k~~~~~Ws-Dg~~l~y~~~~~~~~ 198 (693)
T 3iuj_A 130 ALDQLSFSRDGRILAYSLSL-----AGSDWREIHLMDVESKQPLETPLKDV-----KFSGISWL-GNEGFFYSSYDKPDG 198 (693)
T ss_dssp EEEEEEECTTSSEEEEEEEC-----SSCCEEEEEEEETTTCSEEEEEEEEE-----ESCCCEEE-TTTEEEEEESSCCC-
T ss_pred EEEEEEECCCCCEEEEEEec-----CCCceEEEEEEECCCCCCCccccCCc-----eeccEEEe-CCCEEEEEEecCccc
Confidence 45678999999999999863 12445889999999999776532111 03578999 999999987542100
Q ss_pred CCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CC--CceecCCC-c----eEeeeeeC
Q 005240 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG--TAKDFGTP-A----VYTAVEPS 183 (706)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g--~~~~lt~~-~----~~~~~~~S 183 (706)
. . . .. .....+||++++ ++ +.+.+... . ....+.||
T Consensus 199 ~---~-------~--~~------------------------~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~S 242 (693)
T 3iuj_A 199 S---E-------L--SA------------------------RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVT 242 (693)
T ss_dssp ------------------------------------------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEEC
T ss_pred c---c-------c--cc------------------------cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEc
Confidence 0 0 0 00 002267999998 44 33445433 2 35678999
Q ss_pred CCCcEEEEEeeccCcccccccccccceEEEEecCCC--eeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEE
Q 005240 184 PDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK--LVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVE 261 (706)
Q Consensus 184 pDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~ 261 (706)
|||++|+++...... .++|++++++++ +.++|+..... . ...|+++|+. |++..
T Consensus 243 pDg~~l~~~~~~~~~---------~~~i~~~d~~~~~~~~~~l~~~~~~-------------~-~~~~~~~g~~-l~~~t 298 (693)
T 3iuj_A 243 EDDRFLLISAANSTS---------GNRLYVKDLSQENAPLLTVQGDLDA-------------D-VSLVDNKGST-LYLLT 298 (693)
T ss_dssp TTSCEEEEEEESSSS---------CCEEEEEETTSTTCCCEEEECSSSS-------------C-EEEEEEETTE-EEEEE
T ss_pred CCCCEEEEEEccCCC---------CcEEEEEECCCCCCceEEEeCCCCc-------------e-EEEEeccCCE-EEEEE
Confidence 999999998765422 358999999865 56666554321 1 1238899988 88876
Q ss_pred eccCCCCccccCccceeeeecCCCCCCCCc---eEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCc
Q 005240 262 AQDRGDANVEVSPRDIIYTQPAEPAEGEKP---EILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAP 338 (706)
Q Consensus 262 ~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~---~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~ 338 (706)
+.+. .+..|+.+|+ +++.. +.|+....... .|+++++.|++.... ++..+|++++++++ ..
T Consensus 299 ~~~~--------~~~~l~~~d~---~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~-~g~~~l~~~d~~g~--~~ 362 (693)
T 3iuj_A 299 NRDA--------PNRRLVTVDA---ANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMV-DATARVEQFDYEGK--RV 362 (693)
T ss_dssp CTTC--------TTCEEEEEET---TSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEE-TTEEEEEEECTTSC--EE
T ss_pred CCCC--------CCCEEEEEeC---CCCCccccEEEecCCCCEE--EEEEECCEEEEEEEE-CCeeEEEEEECCCC--ee
Confidence 5432 2236899998 55554 66665544433 899999999887644 35678999999873 33
Q ss_pred eeeecCcccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeeecc
Q 005240 339 RVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWES 413 (706)
Q Consensus 339 ~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~ 413 (706)
+.+.-.....+ ..+.+++|++.+++....- ..-..++.+|+++++.+.+...
T Consensus 363 ~~l~~p~~~~~------~~~~~~~d~~~l~~~~ss~-----------------~tP~~l~~~d~~~g~~~~l~~~ 414 (693)
T 3iuj_A 363 REVALPGLGSV------SGFNGKHDDPALYFGFENY-----------------AQPPTLYRFEPKSGAISLYRAS 414 (693)
T ss_dssp EEECCSSSSEE------EECCCCTTCSCEEEEEECS-----------------SSCCEEEEECTTTCCEEEEECC
T ss_pred EEeecCCCceE------EeeecCCCCCEEEEEecCC-----------------CCCCEEEEEECCCCeEEEEEeC
Confidence 44321111111 1234578888887765321 1123588899988877666544
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.9e-15 Score=157.59 Aligned_cols=284 Identities=11% Similarity=0.012 Sum_probs=160.9
Q ss_pred ceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccc
Q 005240 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (706)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 85 (706)
+|++..++. ..|+.++++..........++|||||+ |+++... .+...|+++++++++.+++......
T Consensus 17 ~i~v~~~d~--~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~-------~~~~~v~~~~~~~g~~~~~~~~~~~-- 84 (347)
T 3hfq_A 17 GIYQGTLDT--TAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKE-------DDEGGIAAWQIDGQTAHKLNTVVAP-- 84 (347)
T ss_dssp EEEEEEEET--TTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEE-------TTEEEEEEEEEETTEEEEEEEEEEE--
T ss_pred CEEEEEEcC--CCCeEEEeeeeeccCCcceEEEccCCe-EEEEEec-------CCCceEEEEEecCCcEEEeeeeecC--
Confidence 577777765 557777765444455677899999999 6555431 2347899999988887766531110
Q ss_pred cccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-
Q 005240 86 NAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL- 164 (706)
Q Consensus 86 ~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l- 164 (706)
...+..++|||||++|++..... +.+.++++
T Consensus 85 ~~~p~~~a~spdg~~l~~~~~~~------------------------------------------------~~v~v~~~~ 116 (347)
T 3hfq_A 85 GTPPAYVAVDEARQLVYSANYHK------------------------------------------------GTAEVMKIA 116 (347)
T ss_dssp SCCCSEEEEETTTTEEEEEETTT------------------------------------------------TEEEEEEEC
T ss_pred CCCCEEEEECCCCCEEEEEeCCC------------------------------------------------CEEEEEEeC
Confidence 11256789999999988764210 23333333
Q ss_pred -CCCceecCCC-------------ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecC-CCeeEEcccCCC
Q 005240 165 -DGTAKDFGTP-------------AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD-GKLVRELCDLPP 229 (706)
Q Consensus 165 -~g~~~~lt~~-------------~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~l~~~~~ 229 (706)
+|..+.+... ..+..++|||||+ |++.... ...|++|+++ +++...+.....
T Consensus 117 ~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~------------~~~v~~~~~~~~g~~~~~~~~~~ 183 (347)
T 3hfq_A 117 ADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLG------------SDKVYVYNVSDAGQLSEQSVLTM 183 (347)
T ss_dssp TTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETT------------TTEEEEEEECTTSCEEEEEEEEC
T ss_pred CCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCC------------CCEEEEEEECCCCcEEEeeeEEc
Confidence 3333222110 2366799999999 6554432 2479999998 555444322111
Q ss_pred CCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeec---c------cc
Q 005240 230 AEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL---D------LR 300 (706)
Q Consensus 230 ~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~---~------~~ 300 (706)
... .++..++|+|||+. |++....+ +.+.+++++. .+++.+.+... . ..
T Consensus 184 ~~g---------~~p~~~~~spdg~~-l~v~~~~~-----------~~v~v~~~~~-~~g~~~~~~~~~~~~~~~~~~~~ 241 (347)
T 3hfq_A 184 EAG---------FGPRHLVFSPDGQY-AFLAGELS-----------SQIASLKYDT-QTGAFTQLGIVKTIPADYTAHNG 241 (347)
T ss_dssp CTT---------CCEEEEEECTTSSE-EEEEETTT-----------TEEEEEEEET-TTTEEEEEEEEESSCTTCCSCCE
T ss_pred CCC---------CCCceEEECCCCCE-EEEEeCCC-----------CEEEEEEecC-CCCceEEeeeeeecCCCCCCCCc
Confidence 100 13447899999986 66542111 2355555521 24544333221 1 23
Q ss_pred cccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEeeeccCCcceE
Q 005240 301 FRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIY 380 (706)
Q Consensus 301 ~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~ 380 (706)
...++|+|||++|++... ..+...+|.++.+ ++...+...... ......++|+|||++|++....
T Consensus 242 ~~~i~~spdG~~l~v~~~-~~~~v~v~~~~~~---g~~~~~~~~~~~----~~~~~~~~~spdg~~l~v~~~~------- 306 (347)
T 3hfq_A 242 AAAIRLSHDGHFLYVSNR-GYNTLAVFAVTAD---GHLTLIQQISTE----GDFPRDFDLDPTEAFVVVVNQN------- 306 (347)
T ss_dssp EEEEEECTTSCEEEEEEE-TTTEEEEEEECGG---GCEEEEEEEECS----SSCCCEEEECTTSSEEEEEETT-------
T ss_pred ceeEEECCCCCEEEEEeC-CCCEEEEEEECCC---CcEEEeEEEecC----CCCcCeEEECCCCCEEEEEEcC-------
Confidence 556889999998876543 2233344444422 222333111110 0012247889999998876521
Q ss_pred EEEecCCCCCCCCCCceeeeecCCCceeee
Q 005240 381 ILLNGRGFTPEGNIPFLDLFDINTGSKERI 410 (706)
Q Consensus 381 ~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l 410 (706)
.+...+|.+|.++|+.+++
T Consensus 307 -----------~~~v~v~~~d~~tg~l~~~ 325 (347)
T 3hfq_A 307 -----------TDNATLYARDLTSGKLSLL 325 (347)
T ss_dssp -----------TTEEEEEEECTTTCCEEEE
T ss_pred -----------CCcEEEEEEeCCCCeEEec
Confidence 1223466678888876655
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.69 E-value=4.2e-15 Score=170.18 Aligned_cols=295 Identities=13% Similarity=0.061 Sum_probs=180.8
Q ss_pred cceeEeecCCCCCCCCeeeeecCCC---CC--cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeeccc
Q 005240 5 TGIGIHRLLPDDSLGPEKEVHGYPD---GA--KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFE 79 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~i~~~~~---~~--~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~ 79 (706)
..|++.+... |++++|+.... +. .+..++|||||++|||+.+. .++...+|+++|+++|+..+...
T Consensus 94 ~~l~~~~~~~----~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~-----~G~~~~~i~v~dl~tg~~~~~~~ 164 (695)
T 2bkl_A 94 AILYWRQGES----GQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKP-----NAADEAVLHVIDVDSGEWSKVDV 164 (695)
T ss_dssp CEEEEEESTT----SCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEE-----TTCSCCEEEEEETTTCCBCSSCC
T ss_pred EEEEEEcCCC----CCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECC-----CCCceEEEEEEECCCCCCcCCcc
Confidence 3467777654 78888874321 11 46789999999999999863 12345799999999998652211
Q ss_pred CCCccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceE
Q 005240 80 SPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQL 159 (706)
Q Consensus 80 ~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l 159 (706)
.... ....+.|||||+.|+|.+...... +.. . ......+|
T Consensus 165 ~~~~----~~~~~~wspDg~~l~~~~~d~~~~---------~~~----~-----------------------~~~~~~~v 204 (695)
T 2bkl_A 165 IEGG----KYATPKWTPDSKGFYYEWLPTDPS---------IKV----D-----------------------ERPGYTTI 204 (695)
T ss_dssp BSCC----TTCCCEECTTSSEEEEEECCCCTT---------SCG----G-----------------------GGGGGCEE
T ss_pred cCcc----cccceEEecCCCEEEEEEecCCCC---------Ccc----c-----------------------cCCCCCEE
Confidence 1111 026789999999999986532211 000 0 00023689
Q ss_pred EEEcc-CCC--ceecCCC----ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCC
Q 005240 160 VLGSL-DGT--AKDFGTP----AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAED 232 (706)
Q Consensus 160 ~~~~l-~g~--~~~lt~~----~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~ 232 (706)
|++++ +++ .+.+... ..+..+.|||||++|++.+..... ..+|++++..+++.++|+.....
T Consensus 205 ~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~---------~~~l~~~~~~~~~~~~l~~~~~~-- 273 (695)
T 2bkl_A 205 RYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWS---------ENDVYWKRPGEKDFRLLVKGVGA-- 273 (695)
T ss_dssp EEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTT---------EEEEEEECTTCSSCEEEEECSSC--
T ss_pred EEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCC---------ceEEEEEcCCCCceEEeecCCCc--
Confidence 99999 443 3344332 356789999999999998866411 35899998877777777654321
Q ss_pred CCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCc---eEEeec--ccccccceec
Q 005240 233 IPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP---EILHKL--DLRFRSVSWC 307 (706)
Q Consensus 233 ~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~---~~l~~~--~~~~~~~~ws 307 (706)
.....| +||+ |++..+.+. .+..|+++|+ ++++. +.|... ...+..+.|+
T Consensus 274 -----------~~~~~~-~~g~--l~~~s~~~~--------~~~~l~~~d~---~~~~~~~~~~l~~~~~~~~l~~~~~~ 328 (695)
T 2bkl_A 274 -----------KYEVHA-WKDR--FYVLTDEGA--------PRQRVFEVDP---AKPARASWKEIVPEDSSASLLSVSIV 328 (695)
T ss_dssp -----------CEEEEE-ETTE--EEEEECTTC--------TTCEEEEEBT---TBCSGGGCEEEECCCSSCEEEEEEEE
T ss_pred -----------eEEEEe-cCCc--EEEEECCCC--------CCCEEEEEeC---CCCCccCCeEEecCCCCCeEEEEEEE
Confidence 223345 7776 666644321 1236899998 55553 566543 3456678888
Q ss_pred CCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCC
Q 005240 308 DDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRG 387 (706)
Q Consensus 308 pDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g 387 (706)
++ .|++... .++..+||.++++++ ..+.+.-..... ...++++|||+.+++.....
T Consensus 329 -~~-~lv~~~~-~dg~~~l~~~~~~g~--~~~~l~~~~~~~------v~~~~~s~d~~~l~~~~ss~------------- 384 (695)
T 2bkl_A 329 -GG-HLSLEYL-KDATSEVRVATLKGK--PVRTVQLPGVGA------ASNLMGLEDLDDAYYVFTSF------------- 384 (695)
T ss_dssp -TT-EEEEEEE-ETTEEEEEEEETTCC--EEEECCCSSSSE------ECCCBSCTTCSEEEEEEEET-------------
T ss_pred -CC-EEEEEEE-ECCEEEEEEEeCCCC--eeEEecCCCCeE------EEEeecCCCCCEEEEEEcCC-------------
Confidence 44 4554433 335678999998752 233331110111 11255689999888775321
Q ss_pred CCCCCCCCceeeeecCCCceeeeec
Q 005240 388 FTPEGNIPFLDLFDINTGSKERIWE 412 (706)
Q Consensus 388 ~~~~~~~~~l~~~d~~~g~~~~l~~ 412 (706)
..-..++++|+++|+.+.+..
T Consensus 385 ----~~P~~v~~~d~~~g~~~~l~~ 405 (695)
T 2bkl_A 385 ----TTPRQIYKTSVSTGKSELWAK 405 (695)
T ss_dssp ----TEEEEEEEEETTTCCEEEEEE
T ss_pred ----CCCCEEEEEECCCCcEEEEec
Confidence 011257888998888666543
|
| >3ain_A 303AA long hypothetical esterase; carboxylesterase, thermophilic, dimer, archaea, R267G, hydro; 1.65A {Sulfolobus tokodaii} PDB: 3aio_A 3ail_A 3aik_A 3aim_A | Back alignment and structure |
|---|
Probab=99.69 E-value=1.2e-15 Score=157.02 Aligned_cols=194 Identities=16% Similarity=0.070 Sum_probs=143.5
Q ss_pred CCCceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHH-CCe
Q 005240 478 ASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA-RRF 556 (706)
Q Consensus 478 ~~~~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~G~ 556 (706)
..+..+.+++.+.+| .+++++|.|.+ .++.|+||++|||++.. ++... ....+..|++ .||
T Consensus 61 ~~~~~~~~~i~~~~~-~i~~~iy~P~~-----~~~~p~vv~~HGGg~~~--------g~~~~----~~~~~~~La~~~g~ 122 (323)
T 3ain_A 61 EVGKIEDITIPGSET-NIKARVYYPKT-----QGPYGVLVYYHGGGFVL--------GDIES----YDPLCRAITNSCQC 122 (323)
T ss_dssp CCSEEEEEEEECSSS-EEEEEEEECSS-----CSCCCEEEEECCSTTTS--------CCTTT----THHHHHHHHHHHTS
T ss_pred CccEEEEEEecCCCC-eEEEEEEecCC-----CCCCcEEEEECCCcccc--------CChHH----HHHHHHHHHHhcCC
Confidence 446788999998777 89999999975 12479999999986532 11111 1245566775 599
Q ss_pred EEEEcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcCC-C-CCCcEEEEEechHHHHHHHHHHhCCCce---eEEE
Q 005240 557 AVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGV-A-DPSRIAVGGHSYGAFMTAHLLAHAPHLF---CCGI 631 (706)
Q Consensus 557 ~v~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~-i-d~~~i~i~G~S~GG~~a~~~~~~~p~~~---~a~v 631 (706)
.|+.+++++. ++.. ....+.|+.++++|+.+... . |++||+|+|+|+||.+|+.++.+.|++. ++++
T Consensus 123 ~Vv~~Dyrg~---~~~~-----~p~~~~d~~~~~~~l~~~~~~lgd~~~i~l~G~S~GG~lA~~~a~~~~~~~~~~~~~v 194 (323)
T 3ain_A 123 VTISVDYRLA---PENK-----FPAAVVDSFDALKWVYNNSEKFNGKYGIAVGGDSAGGNLAAVTAILSKKENIKLKYQV 194 (323)
T ss_dssp EEEEECCCCT---TTSC-----TTHHHHHHHHHHHHHHHTGGGGTCTTCEEEEEETHHHHHHHHHHHHHHHTTCCCSEEE
T ss_pred EEEEecCCCC---CCCC-----CcchHHHHHHHHHHHHHhHHHhCCCceEEEEecCchHHHHHHHHHHhhhcCCCceeEE
Confidence 9999888743 3321 12356788899999988631 2 8899999999999999999999887766 8999
Q ss_pred eccCCCCCCCC------------------------------------------------Ccc----------chHHHHHH
Q 005240 632 ARSGSYNKTLT------------------------------------------------PFG----------FQAERFFD 653 (706)
Q Consensus 632 ~~~~~~d~~~~------------------------------------------------~~~----------~~~~~~~~ 653 (706)
+.+|..+.... |.. -+..++++
T Consensus 195 l~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~l~~l~P~lii~G~~D~l~~~~~~~a~ 274 (323)
T 3ain_A 195 LIYPAVSFDLITKSLYDNGEGFFLTREHIDWFGQQYLRSFADLLDFRFSPILADLNDLPPALIITAEHDPLRDQGEAYAN 274 (323)
T ss_dssp EESCCCSCCSCCHHHHHHSSSSSSCHHHHHHHHHHHCSSGGGGGCTTTCGGGSCCTTCCCEEEEEETTCTTHHHHHHHHH
T ss_pred EEeccccCCCCCccHHHhccCCCCCHHHHHHHHHHhCCCCcccCCcccCcccCcccCCCHHHEEECCCCccHHHHHHHHH
Confidence 99987653210 000 01238889
Q ss_pred HHHhCCCcEEEEEeCCCCccCCCc----ccHHHHHHHHHHHHHHHhcc
Q 005240 654 ALKGHGALSRLVLLPFEHHVYAAR----ENVMHVIWETDRWLQKYCLS 697 (706)
Q Consensus 654 ~l~~~~~~~~~~~~~~~~H~~~~~----~~~~~~~~~~~~f~~~~l~~ 697 (706)
+|+..++++++++|||++|.+... ....+..+.+.+||+++|..
T Consensus 275 ~l~~ag~~~~~~~~~g~~H~~~~~~~~~~~~~~~~~~i~~fl~~~l~~ 322 (323)
T 3ain_A 275 KLLQSGVQVTSVGFNNVIHGFVSFFPFIEQGRDAIGLIGYVLRKVFYG 322 (323)
T ss_dssp HHHHTTCCEEEEEETTCCTTGGGGTTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHcCCCEEEEEECCCccccccccCcCHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999998642 33568899999999998753
|
| >2o7r_A CXE carboxylesterase; alpha/beta hydrolase; 1.40A {Actinidia eriantha} PDB: 2o7v_A | Back alignment and structure |
|---|
Probab=99.69 E-value=1.7e-16 Score=164.97 Aligned_cols=236 Identities=11% Similarity=0.040 Sum_probs=149.0
Q ss_pred CEEEEEEecCCCCcEEEEEECCCCceeEeecCC-CC-CCC---CCCCceEEEEEEccCCeEEEEEEEecCCC-CCCCCCC
Q 005240 439 LKILTSKESKTEITQYHILSWPLKKSSQITNFP-HP-YPT---LASLQKEMIKYQRKDGVPLTATLYLPPGY-DQSKDGP 512 (706)
Q Consensus 439 ~~l~~~~~~~~~p~~v~~~~~~~~~~~~lt~~~-~~-~~~---~~~~~~~~~~~~~~dg~~i~~~l~~P~~~-~~~~~~~ 512 (706)
..+.|...+...+...++++ .+|+..++.... .+ .+. ...+..+.+.+.. +..+.+.+|.|+.. .+ .++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~-~~g~~~r~~~~~~~~~~~~~~~~~~v~~~~v~~~~--~~~~~~~~~~P~~~~~~--~~~ 82 (338)
T 2o7r_A 8 TTGSSDPNTNLLKYLPIVLN-PDRTITRPIQIPSTAASPDPTSSSPVLTKDLALNP--LHNTFVRLFLPRHALYN--SAK 82 (338)
T ss_dssp ----------CTTTCSCEEC-TTSCEECCSCCCBCCCCCCTTSSCSEEEEEEEEET--TTTEEEEEEEEGGGGGS--SCC
T ss_pred CceeeccCcccccccceEEC-CCCeEEecCCCCCCCCCCCcccCCCEEEEEEEecC--CCCeEEEEEeCCCCCcC--CCC
Confidence 34555444444444444444 355555542211 11 111 2346788898886 45688889999763 11 235
Q ss_pred ceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHH-HCCeEEEEcCCCCcCCCCCCCCchhhHHHHHHHHHHHHH
Q 005240 513 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFL-ARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVE 591 (706)
Q Consensus 513 ~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~ 591 (706)
.|+||++|||++..++ .... .....+..|+ +.||.|+..++++... . . ....++|+.++++
T Consensus 83 ~p~vv~~HGgg~~~~~--------~~~~--~~~~~~~~la~~~g~~vv~~d~rg~~~---~-~----~~~~~~d~~~~~~ 144 (338)
T 2o7r_A 83 LPLVVYFHGGGFILFS--------AAST--IFHDFCCEMAVHAGVVIASVDYRLAPE---H-R----LPAAYDDAMEALQ 144 (338)
T ss_dssp EEEEEEECCSTTTSCC--------TTBH--HHHHHHHHHHHHHTCEEEEEECCCTTT---T-C----TTHHHHHHHHHHH
T ss_pred ceEEEEEcCCcCcCCC--------CCch--hHHHHHHHHHHHCCcEEEEecCCCCCC---C-C----CchHHHHHHHHHH
Confidence 8999999998753211 1100 0123456677 6899999988875322 1 1 1245789999999
Q ss_pred HHHHcC------CCCCCcEEEEEechHHHHHHHHHHhCCC--------ceeEEEeccCCCCCCC----------------
Q 005240 592 EVVRRG------VADPSRIAVGGHSYGAFMTAHLLAHAPH--------LFCCGIARSGSYNKTL---------------- 641 (706)
Q Consensus 592 ~l~~~~------~id~~~i~i~G~S~GG~~a~~~~~~~p~--------~~~a~v~~~~~~d~~~---------------- 641 (706)
|+.++. .+|++||+|+|+|+||++++.++.+.|+ +++++|+.+|.++...
T Consensus 145 ~l~~~~~~~~~~~~d~~~v~l~G~S~GG~ia~~~a~~~~~~~~~~~~~~v~~~vl~~p~~~~~~~~~~~~~~~~~~~~~~ 224 (338)
T 2o7r_A 145 WIKDSRDEWLTNFADFSNCFIMGESAGGNIAYHAGLRAAAVADELLPLKIKGLVLDEPGFGGSKRTGSELRLANDSRLPT 224 (338)
T ss_dssp HHHTCCCHHHHHHEEEEEEEEEEETHHHHHHHHHHHHHHTTHHHHTTCCEEEEEEESCCCCCSSCCHHHHHTTTCSSSCH
T ss_pred HHHhCCcchhhccCCcceEEEEEeCccHHHHHHHHHHhccccccCCCCceeEEEEECCccCCCcCChhhhccCCCcccCH
Confidence 998762 2677999999999999999999999887 8999999988654210
Q ss_pred ----------------------CCcc-------------c----------------hHHHHHHHHHhCCCcEEEEEeCCC
Q 005240 642 ----------------------TPFG-------------F----------------QAERFFDALKGHGALSRLVLLPFE 670 (706)
Q Consensus 642 ----------------------~~~~-------------~----------------~~~~~~~~l~~~~~~~~~~~~~~~ 670 (706)
.|.. + ...+++++|++.+.+++++++|++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~P~Lvi~G~~D~~~~~~~~~~~~l~~~~~~~~~~~~~g~ 304 (338)
T 2o7r_A 225 FVLDLIWELSLPMGADRDHEYCNPTAESEPLYSFDKIRSLGWRVMVVGCHGDPMIDRQMELAERLEKKGVDVVAQFDVGG 304 (338)
T ss_dssp HHHHHHHHHHSCTTCCTTSTTTCCC----CCTHHHHHHHHTCEEEEEEETTSTTHHHHHHHHHHHHHTTCEEEEEEESSC
T ss_pred HHHHHHHHHhCCCCCCCCCcccCCCCCCcccccHhhhcCCCCCEEEEECCCCcchHHHHHHHHHHHHCCCcEEEEEECCC
Confidence 0000 0 111688999999999999999999
Q ss_pred CccCCC--cccHHHHHHHHHHHHHHHhcc
Q 005240 671 HHVYAA--RENVMHVIWETDRWLQKYCLS 697 (706)
Q Consensus 671 ~H~~~~--~~~~~~~~~~~~~f~~~~l~~ 697 (706)
+|.+.. +....++.+.+.+||++++..
T Consensus 305 gH~~~~~~~~~~~~~~~~i~~Fl~~~~~~ 333 (338)
T 2o7r_A 305 YHAVKLEDPEKAKQFFVILKKFVVDSCTT 333 (338)
T ss_dssp CTTGGGTCHHHHHHHHHHHHHHHC-----
T ss_pred ceEEeccChHHHHHHHHHHHHHHHhhccc
Confidence 998753 233478899999999998754
|
| >2hm7_A Carboxylesterase; alpha/beta hydrolase fold, hydrolase; 2.00A {Alicyclobacillus acidocaldarius} PDB: 1evq_A* 1u4n_A 1qz3_A | Back alignment and structure |
|---|
Probab=99.69 E-value=3.6e-16 Score=160.34 Aligned_cols=194 Identities=18% Similarity=0.162 Sum_probs=143.9
Q ss_pred CCCceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHC-Ce
Q 005240 478 ASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLAR-RF 556 (706)
Q Consensus 478 ~~~~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-G~ 556 (706)
.....+.+++++.+| .+++++|.|++. .++.|+||++|||++.. ++... ....+..|++. ||
T Consensus 44 ~~~~~~~~~i~~~~g-~l~~~~~~P~~~----~~~~p~vv~~HGGg~~~--------g~~~~----~~~~~~~la~~~g~ 106 (310)
T 2hm7_A 44 PVAEVREFDMDLPGR-TLKVRMYRPEGV----EPPYPALVYYHGGSWVV--------GDLET----HDPVCRVLAKDGRA 106 (310)
T ss_dssp CCSEEEEEEEEETTE-EEEEEEEECTTC----CSSEEEEEEECCSTTTS--------CCTTT----THHHHHHHHHHHTS
T ss_pred CcceEEEEEeccCCC-eEEEEEEecCCC----CCCCCEEEEECCCcccc--------CChhH----hHHHHHHHHHhcCC
Confidence 346788899998777 999999999863 12479999999986532 11111 12456677774 99
Q ss_pred EEEEcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcC---CCCCCcEEEEEechHHHHHHHHHHhCCC----ceeE
Q 005240 557 AVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRG---VADPSRIAVGGHSYGAFMTAHLLAHAPH----LFCC 629 (706)
Q Consensus 557 ~v~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~---~id~~~i~i~G~S~GG~~a~~~~~~~p~----~~~a 629 (706)
.|+.+++++..+.. ....+.|+.++++|+.+.. .+|+++|+|+|+|+||++++.++.+.|+ ++++
T Consensus 107 ~v~~~d~rg~~~~~--------~~~~~~d~~~~~~~l~~~~~~~~~~~~~i~l~G~S~GG~la~~~a~~~~~~~~~~v~~ 178 (310)
T 2hm7_A 107 VVFSVDYRLAPEHK--------FPAAVEDAYDALQWIAERAADFHLDPARIAVGGDSAGGNLAAVTSILAKERGGPALAF 178 (310)
T ss_dssp EEEEECCCCTTTSC--------TTHHHHHHHHHHHHHHHTTGGGTEEEEEEEEEEETHHHHHHHHHHHHHHHTTCCCCCC
T ss_pred EEEEeCCCCCCCCC--------CCccHHHHHHHHHHHHhhHHHhCCCcceEEEEEECHHHHHHHHHHHHHHhcCCCCceE
Confidence 99998887542221 1235788999999998864 3688999999999999999999988765 6999
Q ss_pred EEeccCCCCCC--C--------------------------------------C-----------Ccc----------chH
Q 005240 630 GIARSGSYNKT--L--------------------------------------T-----------PFG----------FQA 648 (706)
Q Consensus 630 ~v~~~~~~d~~--~--------------------------------------~-----------~~~----------~~~ 648 (706)
+++.+|..+.. . . |.. -+.
T Consensus 179 ~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~P~lii~G~~D~~~~~~ 258 (310)
T 2hm7_A 179 QLLIYPSTGYDPAHPPASIEENAEGYLLTGGMMLWFRDQYLNSLEELTHPWFSPVLYPDLSGLPPAYIATAQYDPLRDVG 258 (310)
T ss_dssp EEEESCCCCCCTTSCCHHHHHTSSSSSSCHHHHHHHHHHHCSSGGGGGCTTTCGGGCSCCTTCCCEEEEEEEECTTHHHH
T ss_pred EEEEcCCcCCCcccCCcchhhcCCCCCCCHHHHHHHHHHhCCCCCccCCccCCCCcCccccCCCCEEEEEecCCCchHHH
Confidence 99999876543 0 0 000 012
Q ss_pred HHHHHHHHhCCCcEEEEEeCCCCccCCC----cccHHHHHHHHHHHHHHHhc
Q 005240 649 ERFFDALKGHGALSRLVLLPFEHHVYAA----RENVMHVIWETDRWLQKYCL 696 (706)
Q Consensus 649 ~~~~~~l~~~~~~~~~~~~~~~~H~~~~----~~~~~~~~~~~~~f~~~~l~ 696 (706)
.+++++|+..++++++++|||++|.+.. .....+..+.+.+||+++|.
T Consensus 259 ~~~~~~l~~~g~~~~~~~~~g~~H~~~~~~~~~~~~~~~~~~i~~fl~~~l~ 310 (310)
T 2hm7_A 259 KLYAEALNKAGVKVEIENFEDLIHGFAQFYSLSPGATKALVRIAEKLRDALA 310 (310)
T ss_dssp HHHHHHHHHTTCCEEEEEEEEEETTGGGGTTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCCEEEEEeCCCccchhhhcccChHHHHHHHHHHHHHHHHhC
Confidence 3788999999999999999999998763 12346788999999999873
|
| >3bxp_A Putative lipase/esterase; putative carboxylesterase, structural genomics, joint center structural genomics, JCSG; HET: EPE; 1.70A {Lactobacillus plantarum WCFS1} PDB: 3d3n_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=7.4e-16 Score=155.12 Aligned_cols=195 Identities=16% Similarity=0.124 Sum_probs=134.9
Q ss_pred CceEEEEEEccCCeEEEEEEEecCCC---CCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCe
Q 005240 480 LQKEMIKYQRKDGVPLTATLYLPPGY---DQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRF 556 (706)
Q Consensus 480 ~~~~~~~~~~~dg~~i~~~l~~P~~~---~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~ 556 (706)
+..+.+++. .+|..+...+|.|+.. .. .++.|+||++|||++.. +... .....+..|+++||
T Consensus 2 m~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~--~~~~p~vv~~HGgg~~~--------~~~~----~~~~~~~~l~~~G~ 66 (277)
T 3bxp_A 2 MQVEQRTLN-TAAHPFQITAYWLDQISDFET--AVDYPIMIICPGGGFTY--------HSGR----EEAPIATRMMAAGM 66 (277)
T ss_dssp EEEEEEEEC-STTCCEEEEEEEECCCCSSSC--CCCEEEEEEECCSTTTS--------CCCT----THHHHHHHHHHTTC
T ss_pred cceEEEEec-cCCCcceEEEEeCCccccccc--CCCccEEEEECCCcccc--------CCCc----cchHHHHHHHHCCC
Confidence 345677774 4788999999999831 22 23589999999986432 1111 11245677888999
Q ss_pred EEEEcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcC---CCCCCcEEEEEechHHHHHHHHHHhC----------
Q 005240 557 AVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRG---VADPSRIAVGGHSYGAFMTAHLLAHA---------- 623 (706)
Q Consensus 557 ~v~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~---~id~~~i~i~G~S~GG~~a~~~~~~~---------- 623 (706)
.|+.+++++....+. .....+.|+.++++|+.+.. .+|+++|+|+|+|+||++|+.++.+.
T Consensus 67 ~v~~~d~~g~g~~~~------~~~~~~~d~~~~~~~l~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~~ 140 (277)
T 3bxp_A 67 HTVVLNYQLIVGDQS------VYPWALQQLGATIDWITTQASAHHVDCQRIILAGFSAGGHVVATYNGVATQPELRTRYH 140 (277)
T ss_dssp EEEEEECCCSTTTCC------CTTHHHHHHHHHHHHHHHHHHHHTEEEEEEEEEEETHHHHHHHHHHHHTTSHHHHHHTT
T ss_pred EEEEEecccCCCCCc------cCchHHHHHHHHHHHHHhhhhhcCCChhheEEEEeCHHHHHHHHHHhhccCcccccccC
Confidence 999977765311111 12245778888999998752 27888999999999999999999985
Q ss_pred ----CCceeEEEeccCCCCCC-------------------C----------CCcc------------chHHHHHHHHHhC
Q 005240 624 ----PHLFCCGIARSGSYNKT-------------------L----------TPFG------------FQAERFFDALKGH 658 (706)
Q Consensus 624 ----p~~~~a~v~~~~~~d~~-------------------~----------~~~~------------~~~~~~~~~l~~~ 658 (706)
+.+++++++.+|..+.. . .|.. -+..+++++|...
T Consensus 141 ~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~lii~G~~D~~vp~~~~~~~~~~l~~~ 220 (277)
T 3bxp_A 141 LDHYQGQHAAIILGYPVIDLTAGFPTTSAARNQITTDARLWAAQRLVTPASKPAFVWQTATDESVPPINSLKYVQAMLQH 220 (277)
T ss_dssp CTTCCCCCSEEEEESCCCBTTSSSSSSHHHHHHHCSCGGGSBGGGGCCTTSCCEEEEECTTCCCSCTHHHHHHHHHHHHT
T ss_pred cccccCCcCEEEEeCCcccCCCCCCCccccchhccchhhhcCHhhccccCCCCEEEEeeCCCCccChHHHHHHHHHHHHC
Confidence 67899999999986421 0 0110 0234899999999
Q ss_pred CCcEEEEEeCCCCccCCCcc--------------cHHHHHHHHHHHHHHHh
Q 005240 659 GALSRLVLLPFEHHVYAARE--------------NVMHVIWETDRWLQKYC 695 (706)
Q Consensus 659 ~~~~~~~~~~~~~H~~~~~~--------------~~~~~~~~~~~f~~~~l 695 (706)
+.++++++|++++|.+.... ...++++.+.+||+++.
T Consensus 221 ~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~ 271 (277)
T 3bxp_A 221 QVATAYHLFGSGIHGLALANHVTQKPGKDKYLNDQAAIWPQLALRWLQEQG 271 (277)
T ss_dssp TCCEEEEECCCC----------------CHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEEeCCCCcccccccccccCccccccccchHHHHHHHHHHHHHhcc
Confidence 99999999999999775332 24678899999999875
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.4e-14 Score=146.78 Aligned_cols=299 Identities=9% Similarity=-0.003 Sum_probs=173.3
Q ss_pred ceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCCCC
Q 005240 35 FVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPK 114 (706)
Q Consensus 35 ~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~ 114 (706)
.+.|++++++++.+. .....|.++|+++++.......+.. .. .++|+|||++|++...
T Consensus 2 ~~~~~~~~~~~~v~~---------~~~~~v~~~d~~~~~~~~~~~~~~~----~~-~~~~s~dg~~l~~~~~-------- 59 (331)
T 3u4y_A 2 NAMFQTTSNFGIVVE---------QHLRRISFFSTDTLEILNQITLGYD----FV-DTAITSDCSNVVVTSD-------- 59 (331)
T ss_dssp -----CCCCEEEEEE---------GGGTEEEEEETTTCCEEEEEECCCC----EE-EEEECSSSCEEEEEES--------
T ss_pred ceeEcCCCCEEEEEe---------cCCCeEEEEeCcccceeeeEEccCC----cc-eEEEcCCCCEEEEEeC--------
Confidence 456788888875544 3346899999999887665433322 24 8899999998877642
Q ss_pred CCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCC--ceecCCCceEee-eeeCCCCcEEE
Q 005240 115 KTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT--AKDFGTPAVYTA-VEPSPDQKYVL 190 (706)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~--~~~lt~~~~~~~-~~~SpDG~~i~ 190 (706)
....|+++++ +++ ...+..+..... ++|||||++|+
T Consensus 60 ----------------------------------------~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~ 99 (331)
T 3u4y_A 60 ----------------------------------------FCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAV 99 (331)
T ss_dssp ----------------------------------------TTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEE
T ss_pred ----------------------------------------CCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEE
Confidence 1258999999 555 334444444445 89999999998
Q ss_pred EEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCcc
Q 005240 191 ITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANV 270 (706)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~ 270 (706)
....... ...|++|++++++........ ..+..++|+|||+. |++... ..
T Consensus 100 -~~~~~~~---------~~~i~v~d~~~~~~~~~~~~~-------------~~~~~~~~spdg~~-l~~~~~-~~----- 149 (331)
T 3u4y_A 100 -TVTGLNH---------PFNMQSYSFLKNKFISTIPIP-------------YDAVGIAISPNGNG-LILIDR-SS----- 149 (331)
T ss_dssp -ECCCSSS---------SCEEEEEETTTTEEEEEEECC-------------TTEEEEEECTTSSC-EEEEEE-TT-----
T ss_pred -EecCCCC---------cccEEEEECCCCCeEEEEECC-------------CCccceEECCCCCE-EEEEec-CC-----
Confidence 4433210 128999999977655433221 12347899999997 665432 11
Q ss_pred ccCccce-eeeecCCCCCCCCce----EEeecccccccceecCCCceEEEEeeccccceEEEEEcCCCCCC-CceeeecC
Q 005240 271 EVSPRDI-IYTQPAEPAEGEKPE----ILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDV-APRVLFDR 344 (706)
Q Consensus 271 ~~~~~~~-l~~~d~~~~~~~~~~----~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~-~~~~l~~~ 344 (706)
.. +++++++ ..+... .+.........+.|+|||+.+++.... ...|+++|+.+++. +.......
T Consensus 150 -----~~~i~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~---~~~v~v~d~~~~~~~~~~~~~~~ 219 (331)
T 3u4y_A 150 -----ANTVRRFKID--ADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLI---GNSIGILETQNPENITLLNAVGT 219 (331)
T ss_dssp -----TTEEEEEEEC--TTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETT---TTEEEEEECSSTTSCEEEEEEEC
T ss_pred -----CceEEEEEEC--CCCcEeecCCccccCCCCccceEECCCCCEEEEEeCC---CCeEEEEECCCCcccceeeeccC
Confidence 12 5555552 223321 122223446778999999988776422 34588888887431 00222221
Q ss_pred cccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeeecccchhhhhhhhh
Q 005240 345 VFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVA 424 (706)
Q Consensus 345 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~ 424 (706)
. .....+.|+|||+++++.... ...++.+|+++++.+.+...... +.....
T Consensus 220 ~-------~~~~~~~~spdg~~l~v~~~~--------------------~~~i~~~d~~~~~~~~~~~~~~~--~~~~~~ 270 (331)
T 3u4y_A 220 N-------NLPGTIVVSRDGSTVYVLTES--------------------TVDVFNFNQLSGTLSFVKSFGHG--LLIDPR 270 (331)
T ss_dssp S-------SCCCCEEECTTSSEEEEECSS--------------------EEEEEEEETTTTEEEEEEEEECC--CCCCCG
T ss_pred C-------CCCceEEECCCCCEEEEEEcC--------------------CCEEEEEECCCCceeeecccccc--cccCCC
Confidence 1 112347889999988776421 11366788888876444221110 000000
Q ss_pred hccCCCceecccCCCEEEEEEecCCCCcEEEEEECCCCceeEe
Q 005240 425 LVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQI 467 (706)
Q Consensus 425 ~~~~~~~~~~s~Dg~~l~~~~~~~~~p~~v~~~~~~~~~~~~l 467 (706)
.......+.|||||++|+++.... ..|.+||+.+.....+
T Consensus 271 ~~~~~~~~~~spdg~~l~v~~~~~---~~v~v~d~~~~~~~~~ 310 (331)
T 3u4y_A 271 PLFGANQMALNKTETKLFISANIS---RELKVFTISGKVVGYV 310 (331)
T ss_dssp GGTTCCCEEECTTSSEEEEEETTT---TEEEEEETTSCEEEEC
T ss_pred CcccccceEECCCCCEEEEecCCC---CcEEEEEecCCcccce
Confidence 001112468999999887664432 4688999876554433
|
| >3ls2_A S-formylglutathione hydrolase; psychrophilic organism; 2.20A {Pseudoalteromonas haloplanktis} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.68 E-value=2.6e-16 Score=158.79 Aligned_cols=195 Identities=15% Similarity=0.137 Sum_probs=133.5
Q ss_pred ceEEEEEEc-cCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEE
Q 005240 481 QKEMIKYQR-KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 559 (706)
Q Consensus 481 ~~~~~~~~~-~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~ 559 (706)
..+.+++.+ .+|.+++..+|.|+++++.+ ++|+||++||++... ..|.... ...+.+++.||+|+
T Consensus 14 ~~~~~~~~s~~~g~~~~~~v~~P~~~~~~~--~~P~vv~lHG~~~~~--------~~~~~~~----~~~~~~~~~g~~vv 79 (280)
T 3ls2_A 14 WHKQYTHSAVSTHCTMRFAVFLPPGASESN--KVPVLYWLSGLTCTD--------ENFMQKA----GAFKKAAELGIAIV 79 (280)
T ss_dssp EEEEEEEEETTTTEEEEEEEEECTTCBTTB--CEEEEEEECCTTCCS--------HHHHHHS----CCHHHHHHHTCEEE
T ss_pred eEEEEEEechhcCCceEEEEEcCCCCCCCC--CcCEEEEeCCCCCCh--------hhhhcch----hHHHHHhhCCeEEE
Confidence 456667765 47899999999999876444 599999999975321 1111110 13455667899999
Q ss_pred EcCCC--CcC---------CCCCCCCch----------hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHH
Q 005240 560 AGPSI--PII---------GEGDKLPND----------RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAH 618 (706)
Q Consensus 560 ~~~~~--~~~---------g~g~~~~~~----------~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~ 618 (706)
+++.+ |.. |.|..+... .+.....+++. .++.+...+ ++|++|+|+|+||++|+.
T Consensus 80 ~~d~~~~g~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~~-~~~~~l~G~S~GG~~a~~ 155 (280)
T 3ls2_A 80 APDTSPRGDNVPNEDSYDFAQGAGFYVNATQAPYNTHFNMYDYVVNELP---ALIEQHFPV-TSTKAISGHSMGGHGALM 155 (280)
T ss_dssp ECCSSCCSTTSCCCSCTTSSTTCCTTCBCCSTTTTTTCBHHHHHHTHHH---HHHHHHSSE-EEEEEEEEBTHHHHHHHH
T ss_pred EeCCcccccccccccccccccCCccccccccccccccccHHHHHHHHHH---HHHHhhCCC-CCCeEEEEECHHHHHHHH
Confidence 97643 211 222221110 22333333333 344444333 489999999999999999
Q ss_pred HHHhCCCceeEEEeccCCCCCCC------------------------------------CCcc-----------ch--HH
Q 005240 619 LLAHAPHLFCCGIARSGSYNKTL------------------------------------TPFG-----------FQ--AE 649 (706)
Q Consensus 619 ~~~~~p~~~~a~v~~~~~~d~~~------------------------------------~~~~-----------~~--~~ 649 (706)
++.++|++|+++++.+|.++... .|.. .+ .+
T Consensus 156 ~a~~~p~~~~~~~~~s~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~p~li~~G~~D~~v~~~~~~~ 235 (280)
T 3ls2_A 156 IALKNPQDYVSASAFSPIVNPINCPWGVKAFTGYLGADKTTWAQYDSCKLMAKAEQSNYLPMLVSQGDADNFLDEQLKPQ 235 (280)
T ss_dssp HHHHSTTTCSCEEEESCCSCGGGSHHHHHHHHHHHCSCGGGTGGGCHHHHHHTCCGGGCCCEEEEEETTCTTCCCCCCHH
T ss_pred HHHhCchhheEEEEecCccCcccCcchhhHHHhhcCchHHHHHhcCHHHHHHhccccCCCcEEEEEeCCCcccCCchhHH
Confidence 99999999999999999764221 1210 11 56
Q ss_pred HHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHhc
Q 005240 650 RFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCL 696 (706)
Q Consensus 650 ~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~~~~l~ 696 (706)
+++++|++.++++++++|||++|.+.. +.....++++|+.++|+
T Consensus 236 ~~~~~l~~~g~~~~~~~~~g~~H~~~~---~~~~~~~~~~~~~~~l~ 279 (280)
T 3ls2_A 236 NLVAVAKQKDYPLTLEMQTGYDHSYFF---ISSFIDQHLVFHHQYLS 279 (280)
T ss_dssp HHHHHHHHHTCCEEEEEETTCCSSHHH---HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCCceEEEeCCCCCchhh---HHHHHHHHHHHHHHHhc
Confidence 999999999999999999999998752 45677889999999885
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.4e-14 Score=146.79 Aligned_cols=259 Identities=8% Similarity=-0.029 Sum_probs=158.1
Q ss_pred cceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCce--eecccCCC
Q 005240 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA--KPLFESPD 82 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~--~~lt~~~~ 82 (706)
..|.+.|+.. ++......... ... .++|||||++|+++. .+...|+++|+++++. +.+.....
T Consensus 20 ~~v~~~d~~~----~~~~~~~~~~~-~~~-~~~~s~dg~~l~~~~---------~~~~~i~~~d~~~~~~~~~~~~~~~~ 84 (331)
T 3u4y_A 20 RRISFFSTDT----LEILNQITLGY-DFV-DTAITSDCSNVVVTS---------DFCQTLVQIETQLEPPKVVAIQEGQS 84 (331)
T ss_dssp TEEEEEETTT----CCEEEEEECCC-CEE-EEEECSSSCEEEEEE---------STTCEEEEEECSSSSCEEEEEEECSS
T ss_pred CeEEEEeCcc----cceeeeEEccC-Ccc-eEEEcCCCCEEEEEe---------CCCCeEEEEECCCCceeEEecccCCC
Confidence 4688888876 77765543332 234 899999999887765 3346999999998875 33332222
Q ss_pred ccccccccc-eEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEE
Q 005240 83 ICLNAVFGS-FVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (706)
Q Consensus 83 ~~~~~~~~~-~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~ 161 (706)
... +.|+|||++|+ ...... ....|++
T Consensus 85 ------~~~~~~~s~dg~~l~-~~~~~~---------------------------------------------~~~~i~v 112 (331)
T 3u4y_A 85 ------SMADVDITPDDQFAV-TVTGLN---------------------------------------------HPFNMQS 112 (331)
T ss_dssp ------CCCCEEECTTSSEEE-ECCCSS---------------------------------------------SSCEEEE
T ss_pred ------CccceEECCCCCEEE-EecCCC---------------------------------------------CcccEEE
Confidence 445 89999999988 432100 0137899
Q ss_pred Ecc-CCCce-ecCCCceEeeeeeCCCCcEEEEEeeccCcccccccccccce-EEEEecCCC-eeEEcccCCCCCCCCccc
Q 005240 162 GSL-DGTAK-DFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQK-VQVWTTDGK-LVRELCDLPPAEDIPVCY 237 (706)
Q Consensus 162 ~~l-~g~~~-~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~-~~~~l~~~~~~~~~p~~~ 237 (706)
+++ +++.. .+........++|+|||++|++..... .. +.+|+++.. ............
T Consensus 113 ~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~------------~~~i~~~~~~~~g~~~~~~~~~~~~------ 174 (331)
T 3u4y_A 113 YSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSS------------ANTVRRFKIDADGVLFDTGQEFISG------ 174 (331)
T ss_dssp EETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETT------------TTEEEEEEECTTCCEEEEEEEEECS------
T ss_pred EECCCCCeEEEEECCCCccceEECCCCCEEEEEecCC------------CceEEEEEECCCCcEeecCCccccC------
Confidence 998 45433 333335568999999999988776542 24 888887732 221110000000
Q ss_pred CccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCc---eEEeecccccccceecCCCceEE
Q 005240 238 NSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP---EILHKLDLRFRSVSWCDDSLALV 314 (706)
Q Consensus 238 ~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~---~~l~~~~~~~~~~~wspDg~~l~ 314 (706)
..++..+.|+|||+. |++.... ...|+++|+ ++++. ............+.|+|||+.|+
T Consensus 175 ---~~~~~~~~~spdg~~-l~v~~~~-----------~~~v~v~d~---~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~ 236 (331)
T 3u4y_A 175 ---GTRPFNITFTPDGNF-AFVANLI-----------GNSIGILET---QNPENITLLNAVGTNNLPGTIVVSRDGSTVY 236 (331)
T ss_dssp ---SSSEEEEEECTTSSE-EEEEETT-----------TTEEEEEEC---SSTTSCEEEEEEECSSCCCCEEECTTSSEEE
T ss_pred ---CCCccceEECCCCCE-EEEEeCC-----------CCeEEEEEC---CCCcccceeeeccCCCCCceEEECCCCCEEE
Confidence 022457899999987 6544211 235888888 55665 33333456677899999999887
Q ss_pred EEeeccccceEEEEEcCCCCCCCceee--ecCcccc-cccCCCCCceEeccCCCEEEEee
Q 005240 315 NETWYKTSQTRTWLVCPGSKDVAPRVL--FDRVFEN-VYSDPGSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 315 ~~~~~~~~~~~l~~~d~~~~~~~~~~l--~~~~~~~-~~~~~~~~~~~~s~dg~~l~~~~ 371 (706)
+... ....|+++|+.++ +.+.+ ....+.. .........+.|+|||++|++..
T Consensus 237 v~~~---~~~~i~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~ 291 (331)
T 3u4y_A 237 VLTE---STVDVFNFNQLSG--TLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISA 291 (331)
T ss_dssp EECS---SEEEEEEEETTTT--EEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEE
T ss_pred EEEc---CCCEEEEEECCCC--ceeeecccccccccCCCCcccccceEECCCCCEEEEec
Confidence 7542 2345899999884 33222 1111000 00000112368999999988775
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.68 E-value=6.6e-15 Score=169.80 Aligned_cols=298 Identities=12% Similarity=0.042 Sum_probs=177.5
Q ss_pred cceeEeecCCCCCCCCeeeeec---CCCCC--cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeeccc
Q 005240 5 TGIGIHRLLPDDSLGPEKEVHG---YPDGA--KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFE 79 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~i~~---~~~~~--~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~ 79 (706)
..|++.+...+ .+++.+++.. +..+. .+..++|||||++|||+.+.. ++...+||++|+++|+..+.+.
T Consensus 133 ~~l~~~~~~~~-~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~-----G~e~~~i~v~dl~tg~~~~~~~ 206 (741)
T 1yr2_A 133 SQLLVRPADAP-VGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDG-----GSDWRTVKFVGVADGKPLADEL 206 (741)
T ss_dssp CEEEEEETTSC-TTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEET-----TCSEEEEEEEETTTCCEEEEEE
T ss_pred EEEEEEcCCcc-CCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCC-----CCceEEEEEEECCCCCCCCccC
Confidence 45677776410 1366777643 22222 567899999999999998631 1334789999999998766531
Q ss_pred CCCccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceE
Q 005240 80 SPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQL 159 (706)
Q Consensus 80 ~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l 159 (706)
... .+..+.|||| +.|+|.+....... + .. .. .....+|
T Consensus 207 ~~~-----~~~~~~wspD-~~l~~~~~~~~~~~--------~-~~--~~------------------------~~~~~~v 245 (741)
T 1yr2_A 207 KWV-----KFSGLAWLGN-DALLYSRFAEPKEG--------Q-AF--QA------------------------LNYNQTV 245 (741)
T ss_dssp EEE-----ESCCCEESTT-SEEEEEECCCC-------------------------------------------CCCCCEE
T ss_pred CCc-----eeccEEEECC-CEEEEEEecCcccc--------c-cc--cc------------------------CCCCCEE
Confidence 111 1357899999 99999864321100 0 00 00 0012579
Q ss_pred EEEcc-CCC--ceecCCC----ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCC--e-eEEcccCCC
Q 005240 160 VLGSL-DGT--AKDFGTP----AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK--L-VRELCDLPP 229 (706)
Q Consensus 160 ~~~~l-~g~--~~~lt~~----~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~-~~~l~~~~~ 229 (706)
|++++ +++ .+.+... .....+.|||||++|++.+..... ...+|++++++++ + .+.|+....
T Consensus 246 ~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~--------~~~~l~~~d~~~~~~~~~~~l~~~~~ 317 (741)
T 1yr2_A 246 WLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTD--------PVNTVHVARVTNGKIGPVTALIPDLK 317 (741)
T ss_dssp EEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTC--------SCCEEEEEEEETTEECCCEEEECSSS
T ss_pred EEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCC--------CcceEEEEECCCCCCcccEEecCCCC
Confidence 99998 443 2334332 246789999999999998865311 1368999999876 5 666664432
Q ss_pred CCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCC--CCceEEeec-cccccccee
Q 005240 230 AEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEG--EKPEILHKL-DLRFRSVSW 306 (706)
Q Consensus 230 ~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~--~~~~~l~~~-~~~~~~~~w 306 (706)
. . ...++|||+. |++..+.+. .+..|+++|+ ++ ++.+.|+.. ...+..+.|
T Consensus 318 ~-------------~-~~~~~~dg~~-l~~~s~~~~--------~~~~l~~~d~---~~~~~~~~~l~~~~~~~l~~~~~ 371 (741)
T 1yr2_A 318 A-------------Q-WDFVDGVGDQ-LWFVSGDGA--------PLKKIVRVDL---SGSTPRFDTVVPESKDNLESVGI 371 (741)
T ss_dssp S-------------C-EEEEEEETTE-EEEEECTTC--------TTCEEEEEEC---SSSSCEEEEEECCCSSEEEEEEE
T ss_pred c-------------e-EEEEeccCCE-EEEEECCCC--------CCCEEEEEeC---CCCccccEEEecCCCCeEEEEEE
Confidence 1 1 1235699998 887765422 1235899998 44 345566543 334455667
Q ss_pred cCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecC
Q 005240 307 CDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGR 386 (706)
Q Consensus 307 spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~ 386 (706)
+ +..|++.... ++..+||+++++++ ..+.+.-..... ...+.++|||+.|++.....
T Consensus 372 ~--~~~lv~~~~~-dg~~~l~~~~~~g~--~~~~l~~~~~~~------v~~~~~s~d~~~l~~~~ss~------------ 428 (741)
T 1yr2_A 372 A--GNRLFASYIH-DAKSQVLAFDLDGK--PAGAVSLPGIGS------ASGLSGRPGDRHAYLSFSSF------------ 428 (741)
T ss_dssp E--BTEEEEEEEE-TTEEEEEEEETTSC--EEEECBCSSSCE------EEEEECCBTCSCEEEEEEET------------
T ss_pred E--CCEEEEEEEE-CCEEEEEEEeCCCC--ceeeccCCCCeE------EEEeecCCCCCEEEEEEcCC------------
Confidence 6 4456655433 35678999998652 333332111111 11356789998888765321
Q ss_pred CCCCCCCCCceeeeecCCCceeeee
Q 005240 387 GFTPEGNIPFLDLFDINTGSKERIW 411 (706)
Q Consensus 387 g~~~~~~~~~l~~~d~~~g~~~~l~ 411 (706)
..-..++++|+.+|+.+.+.
T Consensus 429 -----~~P~~i~~~d~~tg~~~~l~ 448 (741)
T 1yr2_A 429 -----TQPATVLALDPATAKTTPWE 448 (741)
T ss_dssp -----TEEEEEEEEETTTTEEEECS
T ss_pred -----CCCCEEEEEECCCCcEEEEe
Confidence 01125788898888765553
|
| >3i6y_A Esterase APC40077; lipase, structural genomics, PSI-2, PR structure initiative, midwest center for structural genomic hydrolase; HET: MSE; 1.75A {Oleispira antarctica} PDB: 3s8y_A | Back alignment and structure |
|---|
Probab=99.68 E-value=3.7e-16 Score=157.67 Aligned_cols=195 Identities=16% Similarity=0.146 Sum_probs=133.2
Q ss_pred ceEEEEEEc-cCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEE
Q 005240 481 QKEMIKYQR-KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 559 (706)
Q Consensus 481 ~~~~~~~~~-~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~ 559 (706)
..+.+++.+ .+|.+++..+|.|+++++.+ ++|+||++||++... ..|.... ...+.+++.||+|+
T Consensus 16 ~~~~~~~~s~~~g~~~~~~v~~P~~~~~~~--~~p~vv~lHG~~~~~--------~~~~~~~----~~~~~~~~~g~~vv 81 (280)
T 3i6y_A 16 WHKQYSHVSNTLNCAMRFAIYLPPQASTGA--KVPVLYWLSGLTCSD--------ENFMQKA----GAQRLAAELGIAIV 81 (280)
T ss_dssp EEEEEEEEETTTTEEEEEEEEECGGGGTTC--CEEEEEEECCTTCCS--------SHHHHHS----CCHHHHHHHTCEEE
T ss_pred cEEEEEEeccccCCeeEEEEEeCCCCCCCC--CccEEEEecCCCCCh--------hHHhhcc----cHHHHHhhCCeEEE
Confidence 456666665 47899999999999875433 599999999975321 1111100 13455667899999
Q ss_pred EcCCCCc--C---------CCCCCCCc----h------hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHH
Q 005240 560 AGPSIPI--I---------GEGDKLPN----D------RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAH 618 (706)
Q Consensus 560 ~~~~~~~--~---------g~g~~~~~----~------~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~ 618 (706)
.++.++. . |.|..+.. . .+.....+|+ ++++.+...+ ++||+|+|+|+||++|+.
T Consensus 82 ~pd~~~~g~~~~~~~~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~i~l~G~S~GG~~a~~ 157 (280)
T 3i6y_A 82 APDTSPRGEGVADDEGYDLGQGAGFYVNATQAPWNRHYQMYDYVVNEL---PELIESMFPV-SDKRAIAGHSMGGHGALT 157 (280)
T ss_dssp EECSSCCSTTCCCCSSTTSSTTCCTTCBCCSTTGGGTCBHHHHHHTHH---HHHHHHHSSE-EEEEEEEEETHHHHHHHH
T ss_pred EeCCcccccccCcccccccccCccccccccCCCccchhhHHHHHHHHH---HHHHHHhCCC-CCCeEEEEECHHHHHHHH
Confidence 8765321 0 11222111 0 1222233333 3445444334 689999999999999999
Q ss_pred HHHhCCCceeEEEeccCCCCCCC----------------------------------CCcc---------c-h---HHHH
Q 005240 619 LLAHAPHLFCCGIARSGSYNKTL----------------------------------TPFG---------F-Q---AERF 651 (706)
Q Consensus 619 ~~~~~p~~~~a~v~~~~~~d~~~----------------------------------~~~~---------~-~---~~~~ 651 (706)
++.++|++|+++++.+|.++... .|.. . . .+++
T Consensus 158 ~a~~~p~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~v~~~~~~~~~ 237 (280)
T 3i6y_A 158 IALRNPERYQSVSAFSPINNPVNCPWGQKAFTAYLGKDTDTWREYDASLLMRAAKQYVPALVDQGEADNFLAEQLKPEVL 237 (280)
T ss_dssp HHHHCTTTCSCEEEESCCCCGGGSHHHHHHHHHHHCSCGGGTGGGCHHHHHHHCSSCCCEEEEEETTCTTHHHHTCHHHH
T ss_pred HHHhCCccccEEEEeCCccccccCchHHHHHHHhcCCchHHHHhcCHHHHHHhcCCCccEEEEEeCCCccccchhhHHHH
Confidence 99999999999999999765321 1110 0 1 4589
Q ss_pred HHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHhc
Q 005240 652 FDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCL 696 (706)
Q Consensus 652 ~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~~~~l~ 696 (706)
.++|++.++++++++|||++|.+. .......++++|+.++|+
T Consensus 238 ~~~l~~~g~~~~~~~~~g~~H~~~---~~~~~~~~~l~~~~~~l~ 279 (280)
T 3i6y_A 238 EAAASSNNYPLELRSHEGYDHSYY---FIASFIEDHLRFHSNYLN 279 (280)
T ss_dssp HHHHHHTTCCEEEEEETTCCSSHH---HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCceEEEeCCCCccHH---HHHHhHHHHHHHHHhhcc
Confidence 999999999999999999999874 245678899999999885
|
| >1lzl_A Heroin esterase; alpha/beta hydrolase; 1.30A {Rhodococcus SP} SCOP: c.69.1.2 PDB: 1lzk_A | Back alignment and structure |
|---|
Probab=99.68 E-value=6.7e-16 Score=159.36 Aligned_cols=196 Identities=19% Similarity=0.135 Sum_probs=144.0
Q ss_pred CCCceEEEEEEccCCe-EEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHH-CC
Q 005240 478 ASLQKEMIKYQRKDGV-PLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA-RR 555 (706)
Q Consensus 478 ~~~~~~~~~~~~~dg~-~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~G 555 (706)
..++.+.+++.+.+|. ++++++|.|++- .++.|+||++|||++.. ++...+ ...+..|++ .|
T Consensus 47 ~~~~~~~~~i~~~~g~~~l~~~~~~P~~~----~~~~p~vv~~HGgg~~~--------g~~~~~----~~~~~~la~~~G 110 (323)
T 1lzl_A 47 DGVSLRELSAPGLDGDPEVKIRFVTPDNT----AGPVPVLLWIHGGGFAI--------GTAESS----DPFCVEVARELG 110 (323)
T ss_dssp TTEEEEEEEECCSTTCCCEEEEEEEESSC----CSCEEEEEEECCSTTTS--------CCGGGG----HHHHHHHHHHHC
T ss_pred CCceEEEEEecCCCCCceeEEEEEecCCC----CCCCcEEEEECCCcccc--------CChhhh----HHHHHHHHHhcC
Confidence 4567889999998887 899999999752 23479999999986432 111111 234566776 69
Q ss_pred eEEEEcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEEechHHHHHHHHHHhCCC----cee
Q 005240 556 FAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRR---GVADPSRIAVGGHSYGAFMTAHLLAHAPH----LFC 628 (706)
Q Consensus 556 ~~v~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~---~~id~~~i~i~G~S~GG~~a~~~~~~~p~----~~~ 628 (706)
|.|+.+++++ .|+... .....|+.++++|+.+. ..+|++||+|+|+|+||++++.++.+.++ .++
T Consensus 111 ~~Vv~~d~rg---~~~~~~-----~~~~~d~~~~~~~l~~~~~~~~~d~~~i~l~G~S~GG~la~~~a~~~~~~~~~~~~ 182 (323)
T 1lzl_A 111 FAVANVEYRL---APETTF-----PGPVNDCYAALLYIHAHAEELGIDPSRIAVGGQSAGGGLAAGTVLKARDEGVVPVA 182 (323)
T ss_dssp CEEEEECCCC---TTTSCT-----THHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHHCSSCCC
T ss_pred cEEEEecCCC---CCCCCC-----CchHHHHHHHHHHHHhhHHHcCCChhheEEEecCchHHHHHHHHHHHhhcCCCCee
Confidence 9999988874 333311 23467888999999874 23788999999999999999999988655 499
Q ss_pred EEEeccCCCCCCCC------------------------------------------------------Ccc---------
Q 005240 629 CGIARSGSYNKTLT------------------------------------------------------PFG--------- 645 (706)
Q Consensus 629 a~v~~~~~~d~~~~------------------------------------------------------~~~--------- 645 (706)
++++.+|..+.... |..
T Consensus 183 ~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~P~li~~G~~D~~ 262 (323)
T 1lzl_A 183 FQFLEIPELDDRLETVSMTNFVDTPLWHRPNAILSWKYYLGESYSGPEDPDVSIYAAPSRATDLTGLPPTYLSTMELDPL 262 (323)
T ss_dssp EEEEESCCCCTTCCSHHHHHCSSCSSCCHHHHHHHHHHHHCTTCCCTTCSCCCTTTCGGGCSCCTTCCCEEEEEETTCTT
T ss_pred EEEEECCccCCCcCchhHHHhccCCCCCHHHHHHHHHHhCCCCcccccccCCCcccCcccCcccCCCChhheEECCcCCc
Confidence 99999987643210 000
Q ss_pred -chHHHHHHHHHhCCCcEEEEEeCCCCccCCCcc---cHHHHHHHHHHHHHHHhcc
Q 005240 646 -FQAERFFDALKGHGALSRLVLLPFEHHVYAARE---NVMHVIWETDRWLQKYCLS 697 (706)
Q Consensus 646 -~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~---~~~~~~~~~~~f~~~~l~~ 697 (706)
-+..+++++|+..++++++++|||++|.+.... ...+..+.+.+||++++..
T Consensus 263 ~~~~~~~~~~l~~~g~~~~~~~~~g~~H~~~~~~~~~~~~~~~~~i~~fl~~~l~~ 318 (323)
T 1lzl_A 263 RDEGIEYALRLLQAGVSVELHSFPGTFHGSALVATAAVSERGAAEALTAIRRGLRS 318 (323)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEETTCCTTGGGSTTSHHHHHHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHHHcCCCEEEEEeCcCccCcccCccCHHHHHHHHHHHHHHHHHhcc
Confidence 012388999999999999999999999875322 2568899999999999854
|
| >3e4d_A Esterase D; S-formylglutathione hydrolase, hydrolase fold family, catalytic triad, kinetics, proposed reaction mechanism; HET: MSE; 2.01A {Agrobacterium tumefaciens} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.67 E-value=5.7e-16 Score=156.06 Aligned_cols=195 Identities=16% Similarity=0.116 Sum_probs=132.1
Q ss_pred ceEEEEEEc-cCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEE
Q 005240 481 QKEMIKYQR-KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 559 (706)
Q Consensus 481 ~~~~~~~~~-~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~ 559 (706)
..+.+++.+ .+|.+++..+|.|++++ ..++|+||++||++... ..|.... ...+.+.+.||+|+
T Consensus 14 ~~~~~~~~s~~~g~~~~~~v~~P~~~~---~~~~p~vv~lHG~~~~~--------~~~~~~~----~~~~~~~~~g~~vv 78 (278)
T 3e4d_A 14 MQGVFSHQSETLKSEMTFAVYVPPKAI---HEPCPVVWYLSGLTCTH--------ANVMEKG----EYRRMASELGLVVV 78 (278)
T ss_dssp EEEEEEEEETTTTEEEEEEEEECGGGG---TSCEEEEEEECCTTCCS--------HHHHHHS----CCHHHHHHHTCEEE
T ss_pred cEEEEEEeccccCCcceEEEEcCCCCC---CCCCCEEEEEcCCCCCc--------cchhhcc----cHHHHHhhCCeEEE
Confidence 455666654 47899999999998764 23589999999974311 0111000 12344556799999
Q ss_pred EcCCCCcC--CCC----------CCCCch----------hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHH
Q 005240 560 AGPSIPII--GEG----------DKLPND----------RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTA 617 (706)
Q Consensus 560 ~~~~~~~~--g~g----------~~~~~~----------~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~ 617 (706)
.++.++.. ..+ ..+... .+.....+ .+++++.+...+|++||+|+|+|+||++|+
T Consensus 79 ~~d~~g~G~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~d~~~i~l~G~S~GG~~a~ 155 (278)
T 3e4d_A 79 CPDTSPRGNDVPDELTNWQMGKGAGFYLDATEEPWSEHYQMYSYVTE---ELPALIGQHFRADMSRQSIFGHSMGGHGAM 155 (278)
T ss_dssp ECCSSCCSTTSCCCTTCTTSBTTBCTTSBCCSTTTTTTCBHHHHHHT---HHHHHHHHHSCEEEEEEEEEEETHHHHHHH
T ss_pred ecCCcccCcccccccccccccCCccccccCCcCcccchhhHHHHHHH---HHHHHHHhhcCCCcCCeEEEEEChHHHHHH
Confidence 97765221 000 010100 11222222 345566666558889999999999999999
Q ss_pred HHHHhCCCceeEEEeccCCCCCCCC----------------------------------Ccc---------ch----HHH
Q 005240 618 HLLAHAPHLFCCGIARSGSYNKTLT----------------------------------PFG---------FQ----AER 650 (706)
Q Consensus 618 ~~~~~~p~~~~a~v~~~~~~d~~~~----------------------------------~~~---------~~----~~~ 650 (706)
.++.++|++|+++++.+|.++.... |.. .. .++
T Consensus 156 ~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~li~~G~~D~~v~~~~~~~~ 235 (278)
T 3e4d_A 156 TIALKNPERFKSCSAFAPIVAPSSADWSEPALEKYLGADRAAWRRYDACSLVEDGARFPEFLIDQGKADSFLEKGLRPWL 235 (278)
T ss_dssp HHHHHCTTTCSCEEEESCCSCGGGCTTTHHHHHHHHCSCGGGGGGGCHHHHHHTTCCCSEEEEEEETTCTTHHHHTCTHH
T ss_pred HHHHhCCcccceEEEeCCcccccCCccchhhHHHhcCCcHHHHHhcChhhHhhcCCCCCcEEEEecCCCcccccchhHHH
Confidence 9999999999999999997753211 100 01 348
Q ss_pred HHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHhc
Q 005240 651 FFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCL 696 (706)
Q Consensus 651 ~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~~~~l~ 696 (706)
+.++|++.++++++++|||++|.+.. ......++++|+.++|+
T Consensus 236 ~~~~l~~~g~~~~~~~~~g~~H~~~~---~~~~~~~~l~~~~~~l~ 278 (278)
T 3e4d_A 236 FEEAIKGTDIGLTLRMHDRYDHSYYF---ISTFMDDHLKWHAERLG 278 (278)
T ss_dssp HHHHHTTSSCEEEEEEETTCCSSHHH---HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCceEEEeCCCCcCHHH---HHHHHHHHHHHHHHhcC
Confidence 89999999999999999999998742 45677889999999874
|
| >3ksr_A Putative serine hydrolase; catalytic triad, structural genomics, JOIN for structural genomics, JCSG; 2.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.67 E-value=1e-15 Score=155.12 Aligned_cols=188 Identities=16% Similarity=0.128 Sum_probs=139.6
Q ss_pred CceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEE
Q 005240 480 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 559 (706)
Q Consensus 480 ~~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~ 559 (706)
+..+.+.++. +|..+.++++.|+ +.|+||++||.+.. ......++..|+++||.|+
T Consensus 4 ~~~~~~~~~~-~g~~l~~~~~~p~--------~~p~vv~~HG~~~~---------------~~~~~~~~~~l~~~g~~v~ 59 (290)
T 3ksr_A 4 AKLSSIEIPV-GQDELSGTLLTPT--------GMPGVLFVHGWGGS---------------QHHSLVRAREAVGLGCICM 59 (290)
T ss_dssp EEEEEEEEEE-TTEEEEEEEEEEE--------SEEEEEEECCTTCC---------------TTTTHHHHHHHHTTTCEEE
T ss_pred CceeeEEecC-CCeEEEEEEecCC--------CCcEEEEeCCCCCC---------------cCcHHHHHHHHHHCCCEEE
Confidence 3567788887 8899999999996 26999999997421 1112345677888999999
Q ss_pred EcCCCCcCCCCCCCCc--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCC
Q 005240 560 AGPSIPIIGEGDKLPN--DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSY 637 (706)
Q Consensus 560 ~~~~~~~~g~g~~~~~--~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~ 637 (706)
..+.+| +|.+... ........+|+.++++++.++..+|+++|+|+|||+||++++.++.++| ++++++.+|..
T Consensus 60 ~~d~~G---~g~s~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~v~l~G~S~Gg~~a~~~a~~~~--~~~~~l~~p~~ 134 (290)
T 3ksr_A 60 TFDLRG---HEGYASMRQSVTRAQNLDDIKAAYDQLASLPYVDAHSIAVVGLSYGGYLSALLTRERP--VEWLALRSPAL 134 (290)
T ss_dssp CCCCTT---SGGGGGGTTTCBHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHTTTSC--CSEEEEESCCC
T ss_pred EeecCC---CCCCCCCcccccHHHHHHHHHHHHHHHHhcCCCCccceEEEEEchHHHHHHHHHHhCC--CCEEEEeCcch
Confidence 977764 4433221 2245667899999999999888888899999999999999999999997 67777777765
Q ss_pred CCCC---CC-----------------------------------cc---------c---hHHHHHHHHHhCCCcEEEEEe
Q 005240 638 NKTL---TP-----------------------------------FG---------F---QAERFFDALKGHGALSRLVLL 667 (706)
Q Consensus 638 d~~~---~~-----------------------------------~~---------~---~~~~~~~~l~~~~~~~~~~~~ 667 (706)
.... .| .. . ..+++++.|...+ +++++++
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~lii~G~~D~~v~~~~~~~~~~~~~~~~-~~~~~~~ 213 (290)
T 3ksr_A 135 YKDAHWDQPKVSLNADPDLMDYRRRALAPGDNLALAACAQYKGDVLLVEAENDVIVPHPVMRNYADAFTNAR-SLTSRVI 213 (290)
T ss_dssp CCSSCTTSBHHHHHHSTTHHHHTTSCCCGGGCHHHHHHHHCCSEEEEEEETTCSSSCHHHHHHHHHHTTTSS-EEEEEEE
T ss_pred hhhhhhhcccccccCChhhhhhhhhhhhhccccHHHHHHhcCCCeEEEEecCCcccChHHHHHHHHHhccCC-CceEEEc
Confidence 4210 00 00 0 1126666665554 7899999
Q ss_pred CCCCccCCCcccHHHHHHHHHHHHHHHhcc
Q 005240 668 PFEHHVYAARENVMHVIWETDRWLQKYCLS 697 (706)
Q Consensus 668 ~~~~H~~~~~~~~~~~~~~~~~f~~~~l~~ 697 (706)
|+++|.+........+.+.+.+||++++..
T Consensus 214 ~~~gH~~~~~~~~~~~~~~i~~fl~~~~~~ 243 (290)
T 3ksr_A 214 AGADHALSVKEHQQEYTRALIDWLTEMVVG 243 (290)
T ss_dssp TTCCTTCCSHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCcchHHHHHHHHHHHHHHHHhcC
Confidence 999999876556778899999999999864
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.67 E-value=2e-14 Score=150.65 Aligned_cols=283 Identities=14% Similarity=0.113 Sum_probs=164.4
Q ss_pred cceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCcc
Q 005240 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~ 84 (706)
.+|++..++. +.|+.++++.. .......++|||||++|+++...+ +..+...+|.++.++|+.+++.......
T Consensus 27 ~~i~~~~~d~--~~g~~~~~~~~-~~~~p~~l~~spdg~~l~~~~~~~----~~~~~v~~~~~~~~~g~~~~~~~~~~~~ 99 (361)
T 3scy_A 27 KGIYTFRFNE--ETGESLPLSDA-EVANPSYLIPSADGKFVYSVNEFS----KDQAAVSAFAFDKEKGTLHLLNTQKTMG 99 (361)
T ss_dssp CEEEEEEEET--TTCCEEEEEEE-ECSCCCSEEECTTSSEEEEEECCS----STTCEEEEEEEETTTTEEEEEEEEECSS
T ss_pred CCEEEEEEeC--CCCCEEEeecc-cCCCCceEEECCCCCEEEEEEccC----CCCCcEEEEEEeCCCCcEEEeeEeccCC
Confidence 3688888865 66888887755 445677789999999997776410 0134566677887778877765332110
Q ss_pred ccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc
Q 005240 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (706)
Q Consensus 85 ~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l 164 (706)
.....+.+ ||++|++.... .+.+.++++
T Consensus 100 --~~p~~~~~--dg~~l~~~~~~------------------------------------------------~~~v~~~~~ 127 (361)
T 3scy_A 100 --ADPCYLTT--NGKNIVTANYS------------------------------------------------GGSITVFPI 127 (361)
T ss_dssp --SCEEEEEE--CSSEEEEEETT------------------------------------------------TTEEEEEEB
T ss_pred --CCcEEEEE--CCCEEEEEECC------------------------------------------------CCEEEEEEe
Confidence 01233444 99987776321 134555555
Q ss_pred --CCCceecCC---------------CceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCe-------
Q 005240 165 --DGTAKDFGT---------------PAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL------- 220 (706)
Q Consensus 165 --~g~~~~lt~---------------~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~------- 220 (706)
+|....+.. ......++|||||++|++..... ..+.+|+++...
T Consensus 128 ~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~------------~~v~v~~~~~~~~~~~~~~ 195 (361)
T 3scy_A 128 GQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGT------------DQIHKFNINPNANADNKEK 195 (361)
T ss_dssp CTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTT------------TEEEEEEECTTCCTTTCCC
T ss_pred CCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCC------------CEEEEEEEcCCCCcccccc
Confidence 232222210 02346799999999998766432 468888776322
Q ss_pred eE------EcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEE
Q 005240 221 VR------ELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEIL 294 (706)
Q Consensus 221 ~~------~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l 294 (706)
.. .+....+ .+++.++|+|||+. ||+.... .+.|.++++ ++++.+.+
T Consensus 196 l~~~~~~~~~~~~~~------------~~~~~~~~spdg~~-l~v~~~~-----------~~~v~v~~~---~~g~~~~~ 248 (361)
T 3scy_A 196 FLTKGTPEAFKVAPG------------SGPRHLIFNSDGKF-AYLINEI-----------GGTVIAFRY---ADGMLDEI 248 (361)
T ss_dssp CEEEEEEEEEECCTT------------CCEEEEEECTTSSE-EEEEETT-----------TCEEEEEEE---ETTEEEEE
T ss_pred eeecccccceecCCC------------CCCeEEEEcCCCCE-EEEEcCC-----------CCeEEEEEe---cCCceEEe
Confidence 21 1111111 23457899999986 6644211 124777777 45555444
Q ss_pred eecc------cccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEE
Q 005240 295 HKLD------LRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVI 368 (706)
Q Consensus 295 ~~~~------~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~ 368 (706)
.... .....+.|+|||++|++..........||.++..++ +...+...... . ....++|+|||++|+
T Consensus 249 ~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g--~~~~~~~~~~g---~--~~~~~~~spdg~~l~ 321 (361)
T 3scy_A 249 QTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNG--TLTKVGYQLTG---I--HPRNFIITPNGKYLL 321 (361)
T ss_dssp EEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTC--CEEEEEEEECS---S--CCCEEEECTTSCEEE
T ss_pred EEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCC--cEEEeeEecCC---C--CCceEEECCCCCEEE
Confidence 3221 123478899999988765432134556777776553 33333211111 0 112478899999988
Q ss_pred EeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeee
Q 005240 369 AKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERI 410 (706)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l 410 (706)
+.... .+...+|.+|.++|+.+.+
T Consensus 322 ~~~~~------------------~~~v~v~~~d~~~g~~~~~ 345 (361)
T 3scy_A 322 VACRD------------------TNVIQIFERDQATGLLTDI 345 (361)
T ss_dssp EEETT------------------TTEEEEEEECTTTCCEEEC
T ss_pred EEECC------------------CCCEEEEEEECCCCcEeec
Confidence 77521 1233566788888876555
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.7e-14 Score=161.31 Aligned_cols=241 Identities=12% Similarity=0.140 Sum_probs=155.7
Q ss_pred ceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccc
Q 005240 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (706)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 85 (706)
.|.+.+... ...+.+.... ..+...+|||||+.|+.... + ..|.+++..+.....+......
T Consensus 285 ~i~~w~~~~----~~~~~~~~h~--~~v~~~~~~~~~~~l~t~~~--------d--~~i~~w~~~~~~~~~~~~~~~~-- 346 (577)
T 2ymu_A 285 TVKLWNRNG----QLLQTLTGHS--SSVWGVAFSPDGQTIASASD--------D--KTVKLWNRNGQHLQTLTGHSSS-- 346 (577)
T ss_dssp CEEEEETTS----CEEEEECCCS--SCEEEEEECTTSSEEEEEET--------T--SCEEEEETTSCEEEEECCCSSC--
T ss_pred EEEEEeCCC----cEEEEEecCC--CCeEEEEECCCCCEEEEEeC--------C--CeEEEEeCCCCeeEEEeCCCCC--
Confidence 355666432 3333343222 24778899999999987653 3 3566668777776666533332
Q ss_pred cccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccC
Q 005240 86 NAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD 165 (706)
Q Consensus 86 ~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~ 165 (706)
+..++|+|||+.|+..... +.+.+++.+
T Consensus 347 ---v~~~~~s~~g~~l~~~~~d-------------------------------------------------g~v~~~~~~ 374 (577)
T 2ymu_A 347 ---VWGVAFSPDGQTIASASDD-------------------------------------------------KTVKLWNRN 374 (577)
T ss_dssp ---EEEEEECTTSSEEEEEETT-------------------------------------------------SEEEEEETT
T ss_pred ---EEEEEECCCCCEEEEEeCC-------------------------------------------------CEEEEEcCC
Confidence 6788999999998876421 456666776
Q ss_pred C-CceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCC
Q 005240 166 G-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREG 243 (706)
Q Consensus 166 g-~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g 243 (706)
+ ....+... ..+..++|||||++|+..+.. ..|.+|+.++...+.+..... .
T Consensus 375 ~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d-------------~~v~~~~~~~~~~~~~~~~~~-------------~ 428 (577)
T 2ymu_A 375 GQLLQTLTGHSSSVRGVAFSPDGQTIASASDD-------------KTVKLWNRNGQLLQTLTGHSS-------------S 428 (577)
T ss_dssp CCEEEEEECCSSCEEEEEECTTSSCEEEEETT-------------SEEEEECTTCCEEEEEECCSS-------------C
T ss_pred CCEEEEecCCCCCeEEEEECCCCCEEEEEeCC-------------CEEEEEeCCCCEEEEecCCCC-------------C
Confidence 6 33444444 678899999999999866543 378999988777666654321 2
Q ss_pred CcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccccc
Q 005240 244 MRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQ 323 (706)
Q Consensus 244 ~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 323 (706)
+..++|+||++. |+... . ...|.+||. .+.....+......+..+.|+|||+.|+..+.+ +
T Consensus 429 v~~~~~s~d~~~-l~~~~-~-----------d~~v~~w~~---~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d--~- 489 (577)
T 2ymu_A 429 VWGVAFSPDDQT-IASAS-D-----------DKTVKLWNR---NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDD--K- 489 (577)
T ss_dssp EEEEEECTTSSE-EEEEE-T-----------TSEEEEEET---TSCEEEEEECCSSCEEEEEECTTSCEEEEEETT--S-
T ss_pred eEEEEECCCCCE-EEEEc-C-----------CCEEEEEEC---CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCC--C-
Confidence 447899999986 55332 1 124778887 555556667777888899999999998876522 2
Q ss_pred eEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEee
Q 005240 324 TRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 324 ~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 371 (706)
.|.++|.++ +....+..... ....+.|+|||++|+...
T Consensus 490 -~i~iw~~~~---~~~~~~~~h~~------~v~~l~~s~dg~~l~s~~ 527 (577)
T 2ymu_A 490 -TVKLWNRNG---QLLQTLTGHSS------SVRGVAFSPDGQTIASAS 527 (577)
T ss_dssp -EEEEEETTS---CEEEEEECCSS------CEEEEEECTTSSCEEEEE
T ss_pred -EEEEEcCCC---CEEEEEeCCCC------CEEEEEEcCCCCEEEEEE
Confidence 355566544 22222222111 122477899999887654
|
| >1vlq_A Acetyl xylan esterase; TM0077, structural genomics, JCSG, PR structure initiative, PSI, joint center for structural GENO hydrolase; 2.10A {Thermotoga maritima} SCOP: c.69.1.25 PDB: 3m81_A 3m83_A* 3m82_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=3.7e-15 Score=154.74 Aligned_cols=195 Identities=16% Similarity=0.155 Sum_probs=138.5
Q ss_pred CCCceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeE
Q 005240 478 ASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFA 557 (706)
Q Consensus 478 ~~~~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~ 557 (706)
..+..+.+++++.||..|+++++.|++. .++.|+||++||++.. .. .......|+++||+
T Consensus 64 ~~~~~~~~~~~~~dg~~i~~~~~~P~~~----~~~~p~vv~~HG~g~~--------~~--------~~~~~~~l~~~G~~ 123 (337)
T 1vlq_A 64 KTVEAYDVTFSGYRGQRIKGWLLVPKLE----EEKLPCVVQYIGYNGG--------RG--------FPHDWLFWPSMGYI 123 (337)
T ss_dssp SSEEEEEEEEECGGGCEEEEEEEEECCS----CSSEEEEEECCCTTCC--------CC--------CGGGGCHHHHTTCE
T ss_pred CCeEEEEEEEEcCCCCEEEEEEEecCCC----CCCccEEEEEcCCCCC--------CC--------CchhhcchhhCCCE
Confidence 4467899999999999999999999863 2248999999997531 10 11234567889999
Q ss_pred EEEcCCCCcCCCCCC--CCc----------------------hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHH
Q 005240 558 VLAGPSIPIIGEGDK--LPN----------------------DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGA 613 (706)
Q Consensus 558 v~~~~~~~~~g~g~~--~~~----------------------~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG 613 (706)
|+.++.+|..+.+.. ... .......+.|+.++++++.++..+|++||+|+|+|+||
T Consensus 124 v~~~d~rG~g~s~~~~~~~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG 203 (337)
T 1vlq_A 124 CFVMDTRGQGSGWLKGDTPDYPEGPVDPQYPGFMTRGILDPRTYYYRRVFTDAVRAVEAAASFPQVDQERIVIAGGSQGG 203 (337)
T ss_dssp EEEECCTTCCCSSSCCCCCBCCSSSBCCCCSSSTTTTTTCTTTCHHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHH
T ss_pred EEEecCCCCCCcccCCCCcccccccCCCCCCcccccCCCCHHHhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeCHHH
Confidence 999887755422110 000 11245678999999999999888899999999999999
Q ss_pred HHHHHHHHhCCCceeEEEeccCCCCCC--------CC-------------------------------------Ccc---
Q 005240 614 FMTAHLLAHAPHLFCCGIARSGSYNKT--------LT-------------------------------------PFG--- 645 (706)
Q Consensus 614 ~~a~~~~~~~p~~~~a~v~~~~~~d~~--------~~-------------------------------------~~~--- 645 (706)
++++.++.+.| +++++++.+|..+.. .. |..
T Consensus 204 ~la~~~a~~~p-~v~~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~ 282 (337)
T 1vlq_A 204 GIALAVSALSK-KAKALLCDVPFLCHFRRAVQLVDTHPYAEITNFLKTHRDKEEIVFRTLSYFDGVNFAARAKIPALFSV 282 (337)
T ss_dssp HHHHHHHHHCS-SCCEEEEESCCSCCHHHHHHHCCCTTHHHHHHHHHHCTTCHHHHHHHHHTTCHHHHHTTCCSCEEEEE
T ss_pred HHHHHHHhcCC-CccEEEECCCcccCHHHHHhcCCCcchHHHHHHHHhCchhHHHHHHhhhhccHHHHHHHcCCCEEEEe
Confidence 99999999997 689999888854310 00 000
Q ss_pred ------chHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHhcc
Q 005240 646 ------FQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCLS 697 (706)
Q Consensus 646 ------~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~~~~l~~ 697 (706)
...+...+...+...+++++++|+++|.+.. .+..+.+.+||+++|..
T Consensus 283 G~~D~~~p~~~~~~~~~~l~~~~~~~~~~~~gH~~~~----~~~~~~~~~fl~~~l~~ 336 (337)
T 1vlq_A 283 GLMDNICPPSTVFAAYNYYAGPKEIRIYPYNNHEGGG----SFQAVEQVKFLKKLFEK 336 (337)
T ss_dssp ETTCSSSCHHHHHHHHHHCCSSEEEEEETTCCTTTTH----HHHHHHHHHHHHHHHC-
T ss_pred eCCCCCCCchhHHHHHHhcCCCcEEEEcCCCCCCCcc----hhhHHHHHHHHHHHHhc
Confidence 0001222223333447899999999999742 35678999999999853
|
| >2uz0_A Esterase, tributyrin esterase; alpha/beta hydrolase, hydrolase, A virulence facto LUNG infection; HET: MSE; 1.7A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=99.67 E-value=5.4e-16 Score=154.71 Aligned_cols=200 Identities=12% Similarity=0.016 Sum_probs=135.6
Q ss_pred CceEEEEEEcc-CCeEEEEEEEecCCCCC--CCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHH-HCC
Q 005240 480 LQKEMIKYQRK-DGVPLTATLYLPPGYDQ--SKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFL-ARR 555 (706)
Q Consensus 480 ~~~~~~~~~~~-dg~~i~~~l~~P~~~~~--~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~G 555 (706)
+..+.+++.+. .|..+++++|.|++++. ...+++|+||++||++.. . ..+.. ......++ +.|
T Consensus 5 m~~~~~~~~s~~~~~~~~~~v~~P~~~~~~~~~~~~~p~vv~~HG~~~~--------~---~~~~~--~~~~~~~~~~~~ 71 (263)
T 2uz0_A 5 PAVMKIEYYSQVLDMEWGVNVLYPDANRVEEPECEDIPVLYLLHGMSGN--------H---NSWLK--RTNVERLLRGTN 71 (263)
T ss_dssp CEEEEEEEEETTTTEEEEEEEEECC---------CCBCEEEEECCTTCC--------T---THHHH--HSCHHHHTTTCC
T ss_pred ceEeEEEEechhhCCceeEEEEeCCCccccCCcCCCCCEEEEECCCCCC--------H---HHHHh--ccCHHHHHhcCC
Confidence 45677788764 67899999999998621 112358999999997421 0 11100 00133344 489
Q ss_pred eEEEEcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccC
Q 005240 556 FAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSG 635 (706)
Q Consensus 556 ~~v~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~ 635 (706)
|+|+.++++++ ++........+.....+|+...++.+..+..+|+++|+|+|+|+||++|+.++. +|++|+++++.+|
T Consensus 72 ~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~-~~~~~~~~v~~~~ 149 (263)
T 2uz0_A 72 LIVVMPNTSNG-WYTDTQYGFDYYTALAEELPQVLKRFFPNMTSKREKTFIAGLSMGGYGCFKLAL-TTNRFSHAASFSG 149 (263)
T ss_dssp CEEEECCCTTS-TTSBCTTSCBHHHHHHTHHHHHHHHHCTTBCCCGGGEEEEEETHHHHHHHHHHH-HHCCCSEEEEESC
T ss_pred eEEEEECCCCC-ccccCCCcccHHHHHHHHHHHHHHHHhccccCCCCceEEEEEChHHHHHHHHHh-CccccceEEEecC
Confidence 99998666433 322211122344555667777666654434468899999999999999999999 8999999999999
Q ss_pred CCCCCCC-----------------------------------------Ccc---------c-hHHHHHHHHHhCCCcEEE
Q 005240 636 SYNKTLT-----------------------------------------PFG---------F-QAERFFDALKGHGALSRL 664 (706)
Q Consensus 636 ~~d~~~~-----------------------------------------~~~---------~-~~~~~~~~l~~~~~~~~~ 664 (706)
..+.... |.. . ...+++++|+..+.++++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~li~~G~~D~~v~~~~~~~~~l~~~g~~~~~ 229 (263)
T 2uz0_A 150 ALSFQNFSPESQNLGSPAYWRGVFGEIRDWTTSPYSLESLAKKSDKKTKLWAWCGEQDFLYEANNLAVKNLKKLGFDVTY 229 (263)
T ss_dssp CCCSSSCCGGGTTCSCHHHHHHHHCCCSCTTTSTTSHHHHGGGCCSCSEEEEEEETTSTTHHHHHHHHHHHHHTTCEEEE
T ss_pred CcchhhccccccccccchhHHHHcCChhhhccccCCHHHHHHhccCCCeEEEEeCCCchhhHHHHHHHHHHHHCCCCeEE
Confidence 8764321 100 0 234899999999999999
Q ss_pred EEeCCCCccCCCcccHHHHHHHHHHHHHHHhccC
Q 005240 665 VLLPFEHHVYAARENVMHVIWETDRWLQKYCLSN 698 (706)
Q Consensus 665 ~~~~~~~H~~~~~~~~~~~~~~~~~f~~~~l~~~ 698 (706)
++||| +|.+.. .....+.+++||.++|+.+
T Consensus 230 ~~~~g-~H~~~~---~~~~~~~~~~~l~~~l~~~ 259 (263)
T 2uz0_A 230 SHSAG-THEWYY---WEKQLEVFLTTLPIDFKLE 259 (263)
T ss_dssp EEESC-CSSHHH---HHHHHHHHHHHSSSCCCCC
T ss_pred EECCC-CcCHHH---HHHHHHHHHHHHHhhccch
Confidence 99999 998642 3467789999999988754
|
| >1gkl_A Endo-1,4-beta-xylanase Y; hydrolase, esterase family 1, inactive mutant; HET: FER; 1.4A {Clostridium thermocellum} SCOP: c.69.1.2 PDB: 1wb4_A* 1wb5_A* 1wb6_A* 1gkk_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.9e-15 Score=153.44 Aligned_cols=177 Identities=14% Similarity=0.121 Sum_probs=123.5
Q ss_pred CceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHC----C
Q 005240 480 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLAR----R 555 (706)
Q Consensus 480 ~~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----G 555 (706)
.+.+.+++.+.++ .+..++|+|+++++++ ++|+||++||++.. ...|..........+..|++. +
T Consensus 39 g~~~~~~~~s~~~-~~~~~vy~P~~~~~~~--~~Pvlv~lHG~~~~--------~~~~~~~~~~~~~~~~~l~~~g~~~~ 107 (297)
T 1gkl_A 39 GRIVKETYTGING-TKSLNVYLPYGYDPNK--KYNIFYLMHGGGEN--------ENTIFSNDVKLQNILDHAIMNGELEP 107 (297)
T ss_dssp CEEEEEEEEETTE-EEEEEEEECTTCCTTS--CCEEEEEECCTTCC--------TTSTTSTTTCHHHHHHHHHHTTSSCC
T ss_pred ceEEEEEEEcCCC-EEEEEEEeCCCCCCCC--CCCEEEEECCCCCC--------cchhhcccchHHHHHHHHHHcCCCCC
Confidence 4678899998776 9999999999987543 59999999997531 111221111112345566766 4
Q ss_pred eEEEEcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcCC------------CCCCcEEEEEechHHHHHHHHHHhC
Q 005240 556 FAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGV------------ADPSRIAVGGHSYGAFMTAHLLAHA 623 (706)
Q Consensus 556 ~~v~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~------------id~~~i~i~G~S~GG~~a~~~~~~~ 623 (706)
|+|++++.++..+. ...+....++|+... +.+... .|+.+++|+|+||||++|++++.++
T Consensus 108 ~ivv~pd~~~~~~~-----~~~~~~~~~~~l~~~---i~~~~~~~~~~~~~~~i~~d~~~~~i~G~S~GG~~al~~a~~~ 179 (297)
T 1gkl_A 108 LIVVTPTFNGGNCT-----AQNFYQEFRQNVIPF---VESKYSTYAESTTPQGIAASRMHRGFGGFAMGGLTTWYVMVNC 179 (297)
T ss_dssp EEEEECCSCSTTCC-----TTTHHHHHHHTHHHH---HHHHSCSSCSSCSHHHHHTTGGGEEEEEETHHHHHHHHHHHHH
T ss_pred EEEEEecCcCCccc-----hHHHHHHHHHHHHHH---HHHhCCccccccccccccCCccceEEEEECHHHHHHHHHHHhC
Confidence 99999887654322 223434445555544 444322 3678899999999999999999999
Q ss_pred CCceeEEEeccCCCCCCCC--------------------Cc-----------cc-hHHHHHHHHHhCC----------Cc
Q 005240 624 PHLFCCGIARSGSYNKTLT--------------------PF-----------GF-QAERFFDALKGHG----------AL 661 (706)
Q Consensus 624 p~~~~a~v~~~~~~d~~~~--------------------~~-----------~~-~~~~~~~~l~~~~----------~~ 661 (706)
|++|+++++.+|.+.+... +. .+ +.+++.++|++.+ ++
T Consensus 180 p~~f~~~v~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~D~~~~~~~~l~~~L~~~g~~~~~~~~~~~~ 259 (297)
T 1gkl_A 180 LDYVAYFMPLSGDYWYGNSPQDKANSIAEAINRSGLSKREYFVFAATGSEDIAYANMNPQIEAMKALPHFDYTSDFSKGN 259 (297)
T ss_dssp TTTCCEEEEESCCCCBSSSHHHHHHHHHHHHHHHTCCTTSCEEEEEEETTCTTHHHHHHHHHHHHTSTTCCBBSCTTTCC
T ss_pred chhhheeeEeccccccCCccchhhhHHHHHHhhccCCcCcEEEEEEeCCCcccchhHHHHHHHHHHcCCccccccccCCc
Confidence 9999999999997643210 10 01 2348999999998 69
Q ss_pred EEEEEeCCCCccCC
Q 005240 662 SRLVLLPFEHHVYA 675 (706)
Q Consensus 662 ~~~~~~~~~~H~~~ 675 (706)
+++.+|||++|.+.
T Consensus 260 ~~~~~~~g~gH~~~ 273 (297)
T 1gkl_A 260 FYFLVAPGATHWWG 273 (297)
T ss_dssp EEEEEETTCCSSHH
T ss_pred eEEEECCCCCcCHH
Confidence 99999999999753
|
| >2c7b_A Carboxylesterase, ESTE1; carboxyesterase, thermophilic enzyme, hydrolase, HSL, alpha/beta hydrolase fold; 2.3A {Uncultured archaeon} | Back alignment and structure |
|---|
Probab=99.67 E-value=2e-15 Score=154.87 Aligned_cols=192 Identities=18% Similarity=0.127 Sum_probs=140.9
Q ss_pred CCceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHC-CeE
Q 005240 479 SLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLAR-RFA 557 (706)
Q Consensus 479 ~~~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-G~~ 557 (706)
....+.+++++.+| .+++++|.|.+ ..+.|+||++|||++.. ++...+ ..++..|++. ||.
T Consensus 45 ~~~~~~~~i~~~~g-~i~~~~~~p~~-----~~~~p~vv~~HGgg~~~--------g~~~~~----~~~~~~la~~~g~~ 106 (311)
T 2c7b_A 45 IAETRDVHIPVSGG-SIRARVYFPKK-----AAGLPAVLYYHGGGFVF--------GSIETH----DHICRRLSRLSDSV 106 (311)
T ss_dssp CSEEEEEEEEETTE-EEEEEEEESSS-----CSSEEEEEEECCSTTTS--------CCTGGG----HHHHHHHHHHHTCE
T ss_pred cceEEEEEecCCCC-cEEEEEEecCC-----CCCCcEEEEECCCcccC--------CChhhh----HHHHHHHHHhcCCE
Confidence 35778899998777 99999999975 12379999999986421 111111 2345667764 999
Q ss_pred EEEcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcC---CCCCCcEEEEEechHHHHHHHHHHhCCC----ceeEE
Q 005240 558 VLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRG---VADPSRIAVGGHSYGAFMTAHLLAHAPH----LFCCG 630 (706)
Q Consensus 558 v~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~---~id~~~i~i~G~S~GG~~a~~~~~~~p~----~~~a~ 630 (706)
|+.+++++ .|+... .....|+.++++|+.+.. .+|++||+|+|+|+||++++.++.+.|+ +++++
T Consensus 107 v~~~d~rg---~g~~~~-----~~~~~d~~~~~~~l~~~~~~~~~d~~~i~l~G~S~GG~la~~~a~~~~~~~~~~~~~~ 178 (311)
T 2c7b_A 107 VVSVDYRL---APEYKF-----PTAVEDAYAALKWVADRADELGVDPDRIAVAGDSAGGNLAAVVSILDRNSGEKLVKKQ 178 (311)
T ss_dssp EEEECCCC---TTTSCT-----THHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTTCCCCSEE
T ss_pred EEEecCCC---CCCCCC-----CccHHHHHHHHHHHHhhHHHhCCCchhEEEEecCccHHHHHHHHHHHHhcCCCCceeE
Confidence 99988864 333311 234678889999998752 3688999999999999999999988765 59999
Q ss_pred EeccCCCCC----CC-------------------------------------C----------Ccc--------c--hHH
Q 005240 631 IARSGSYNK----TL-------------------------------------T----------PFG--------F--QAE 649 (706)
Q Consensus 631 v~~~~~~d~----~~-------------------------------------~----------~~~--------~--~~~ 649 (706)
++.+|..+. .. . |.. . +..
T Consensus 179 vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~P~lii~G~~D~~~~~~~ 258 (311)
T 2c7b_A 179 VLIYPVVNMTGVPTASLVEFGVAETTSLPIELMVWFGRQYLKRPEEAYDFKASPLLADLGGLPPALVVTAEYDPLRDEGE 258 (311)
T ss_dssp EEESCCCCCSSCCCHHHHHHHHCTTCSSCHHHHHHHHHHHCSSTTGGGSTTTCGGGSCCTTCCCEEEEEETTCTTHHHHH
T ss_pred EEECCccCCccccccCCccHHHhccCCCCHHHHHHHHHHhCCCCccccCcccCcccccccCCCcceEEEcCCCCchHHHH
Confidence 999998762 00 0 000 0 122
Q ss_pred HHHHHHHhCCCcEEEEEeCCCCccCCC----cccHHHHHHHHHHHHHHHhc
Q 005240 650 RFFDALKGHGALSRLVLLPFEHHVYAA----RENVMHVIWETDRWLQKYCL 696 (706)
Q Consensus 650 ~~~~~l~~~~~~~~~~~~~~~~H~~~~----~~~~~~~~~~~~~f~~~~l~ 696 (706)
.+.++|+..+.++++++|||++|.+.. .....+..+.+.+||++++.
T Consensus 259 ~~~~~l~~~g~~~~~~~~~g~~H~~~~~~~~~~~~~~~~~~i~~fl~~~l~ 309 (311)
T 2c7b_A 259 LYAYKMKASGSRAVAVRFAGMVHGFVSFYPFVDAGREALDLAAASIRSGLQ 309 (311)
T ss_dssp HHHHHHHHTTCCEEEEEETTCCTTGGGGTTTCHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCCEEEEEeCCCccccccccccCHHHHHHHHHHHHHHHHHhc
Confidence 688899999999999999999999863 23357888999999999875
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.67 E-value=4.2e-14 Score=149.82 Aligned_cols=271 Identities=9% Similarity=0.016 Sum_probs=177.7
Q ss_pred CCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccc
Q 005240 59 SCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMT 138 (706)
Q Consensus 59 ~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (706)
.....|+++|+++++..+....... +..+.|+|||++|++...
T Consensus 9 ~~d~~v~v~d~~~~~~~~~~~~~~~-----~~~~~~s~dg~~l~~~~~-------------------------------- 51 (391)
T 1l0q_A 9 SESDNISVIDVTSNKVTATIPVGSN-----PMGAVISPDGTKVYVANA-------------------------------- 51 (391)
T ss_dssp TTTTEEEEEETTTTEEEEEEECSSS-----EEEEEECTTSSEEEEEEG--------------------------------
T ss_pred CCCCEEEEEECCCCeEEEEeecCCC-----cceEEECCCCCEEEEECC--------------------------------
Confidence 3446899999998887665443332 678899999998876532
Q ss_pred hhccCCchhhhhhhhcccceEEEEcc-CCCce-ecCCCceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEec
Q 005240 139 DNLLKDEYDESLFDYYTTAQLVLGSL-DGTAK-DFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTT 216 (706)
Q Consensus 139 ~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~~-~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~ 216 (706)
..+.|+++++ +++.. .+.....+..++|+|||++|++..... ..|++||+
T Consensus 52 ----------------~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~------------~~v~v~d~ 103 (391)
T 1l0q_A 52 ----------------HSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMAS------------STLSVIDT 103 (391)
T ss_dssp ----------------GGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTT------------TEEEEEET
T ss_pred ----------------CCCeEEEEECCCCeEEEEEECCCCccceEECCCCCEEEEEECCC------------CEEEEEEC
Confidence 1267888998 56443 333336788999999999998775432 47999999
Q ss_pred CCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEee
Q 005240 217 DGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK 296 (706)
Q Consensus 217 ~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~ 296 (706)
.+++........ ..+..+.|+|||+. |++.... ...|+++|+ .+++......
T Consensus 104 ~~~~~~~~~~~~-------------~~~~~~~~s~dg~~-l~~~~~~-----------~~~v~~~d~---~~~~~~~~~~ 155 (391)
T 1l0q_A 104 TSNTVAGTVKTG-------------KSPLGLALSPDGKK-LYVTNNG-----------DKTVSVINT---VTKAVINTVS 155 (391)
T ss_dssp TTTEEEEEEECS-------------SSEEEEEECTTSSE-EEEEETT-----------TTEEEEEET---TTTEEEEEEE
T ss_pred CCCeEEEEEeCC-------------CCcceEEECCCCCE-EEEEeCC-----------CCEEEEEEC---CCCcEEEEEe
Confidence 977665443322 12347899999987 6544211 235889998 5565555444
Q ss_pred cccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEeeeccCC
Q 005240 297 LDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKEND 376 (706)
Q Consensus 297 ~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~ 376 (706)
.......+.|+|||+.|++.... ...|+++|+.++ +......... ....+.|+|||++|++....
T Consensus 156 ~~~~~~~~~~~~dg~~l~~~~~~---~~~v~~~d~~~~--~~~~~~~~~~-------~~~~~~~~~~g~~l~~~~~~--- 220 (391)
T 1l0q_A 156 VGRSPKGIAVTPDGTKVYVANFD---SMSISVIDTVTN--SVIDTVKVEA-------APSGIAVNPEGTKAYVTNVD--- 220 (391)
T ss_dssp CCSSEEEEEECTTSSEEEEEETT---TTEEEEEETTTT--EEEEEEECSS-------EEEEEEECTTSSEEEEEEEC---
T ss_pred cCCCcceEEECCCCCEEEEEeCC---CCEEEEEECCCC--eEEEEEecCC-------CccceEECCCCCEEEEEecC---
Confidence 45566788999999988765422 245888998874 2333222110 11236789999998877521
Q ss_pred cceEEEEecCCCCCCCCCCceeeeecCCCceeeeecccchhhhhhhhhhccCCCceecccCCCEEEEEEecCCCCcEEEE
Q 005240 377 EQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHI 456 (706)
Q Consensus 377 ~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~p~~v~~ 456 (706)
.....++.+|+.+++......... ....+.|+|||+.|+++.... ..|++
T Consensus 221 ---------------~~~~~v~~~d~~~~~~~~~~~~~~------------~~~~~~~s~dg~~l~~s~~~d---~~v~v 270 (391)
T 1l0q_A 221 ---------------KYFNTVSMIDTGTNKITARIPVGP------------DPAGIAVTPDGKKVYVALSFX---NTVSV 270 (391)
T ss_dssp ---------------SSCCEEEEEETTTTEEEEEEECCS------------SEEEEEECTTSSEEEEEETTT---TEEEE
T ss_pred ---------------cCCCcEEEEECCCCeEEEEEecCC------------CccEEEEccCCCEEEEEcCCC---CEEEE
Confidence 012247778888776544443321 112468999999887765433 57999
Q ss_pred EECCCCceeEe
Q 005240 457 LSWPLKKSSQI 467 (706)
Q Consensus 457 ~~~~~~~~~~l 467 (706)
||+.+++....
T Consensus 271 ~d~~~~~~~~~ 281 (391)
T 1l0q_A 271 IDTATNTITAT 281 (391)
T ss_dssp EETTTTEEEEE
T ss_pred EECCCCcEEEE
Confidence 99998866543
|
| >3k6k_A Esterase/lipase; alpha/beta hydrolase fold; 2.20A {Uncultured bacterium} PDB: 3dnm_A | Back alignment and structure |
|---|
Probab=99.66 E-value=8.8e-16 Score=158.27 Aligned_cols=189 Identities=16% Similarity=0.137 Sum_probs=132.1
Q ss_pred CCceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHH-CCeE
Q 005240 479 SLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA-RRFA 557 (706)
Q Consensus 479 ~~~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~G~~ 557 (706)
.+..+.+.+ +|..+ +.|++- .. ..|+||++|||++.. ++...+ ...+..|++ .||.
T Consensus 57 ~~~~~~~~~---~g~~~----~~p~~~--~~--~~~~vv~~HGgg~~~--------g~~~~~----~~~~~~la~~~g~~ 113 (322)
T 3k6k_A 57 GVELTLTDL---GGVPC----IRQATD--GA--GAAHILYFHGGGYIS--------GSPSTH----LVLTTQLAKQSSAT 113 (322)
T ss_dssp TCEEEEEEE---TTEEE----EEEECT--TC--CSCEEEEECCSTTTS--------CCHHHH----HHHHHHHHHHHTCE
T ss_pred CceEEEEEE---CCEeE----EecCCC--CC--CCeEEEEEcCCcccC--------CChHHH----HHHHHHHHHhcCCE
Confidence 344555544 66555 567651 11 235599999986532 111111 133455665 5999
Q ss_pred EEEcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCc----eeEEEec
Q 005240 558 VLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHL----FCCGIAR 633 (706)
Q Consensus 558 v~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~----~~a~v~~ 633 (706)
|+.+++++.... . ....++|+.++++|+.++ .+|+++|+|+|+|+||++|+.++.+.|+. ++++++.
T Consensus 114 v~~~dyr~~~~~----~----~~~~~~d~~~a~~~l~~~-~~~~~~i~l~G~S~GG~la~~~a~~~~~~~~~~~~~~vl~ 184 (322)
T 3k6k_A 114 LWSLDYRLAPEN----P----FPAAVDDCVAAYRALLKT-AGSADRIIIAGDSAGGGLTTASMLKAKEDGLPMPAGLVML 184 (322)
T ss_dssp EEEECCCCTTTS----C----TTHHHHHHHHHHHHHHHH-HSSGGGEEEEEETHHHHHHHHHHHHHHHTTCCCCSEEEEE
T ss_pred EEEeeCCCCCCC----C----CchHHHHHHHHHHHHHHc-CCCCccEEEEecCccHHHHHHHHHHHHhcCCCCceEEEEe
Confidence 999888754221 1 124578999999999987 46899999999999999999999887665 9999999
Q ss_pred cCCCCCCCC------------------------------------------------Ccc----------chHHHHHHHH
Q 005240 634 SGSYNKTLT------------------------------------------------PFG----------FQAERFFDAL 655 (706)
Q Consensus 634 ~~~~d~~~~------------------------------------------------~~~----------~~~~~~~~~l 655 (706)
+|..+.... |.. -+..+++++|
T Consensus 185 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~pP~li~~G~~D~~~~~~~~~~~~l 264 (322)
T 3k6k_A 185 SPFVDLTLSRWSNSNLADRDFLAEPDTLGEMSELYVGGEDRKNPLISPVYADLSGLPEMLIHVGSEEALLSDSTTLAERA 264 (322)
T ss_dssp SCCCCTTCCSHHHHHTGGGCSSSCHHHHHHHHHHHHTTSCTTCTTTCGGGSCCTTCCCEEEEEESSCTTHHHHHHHHHHH
T ss_pred cCCcCcccCccchhhccCCCCcCCHHHHHHHHHHhcCCCCCCCCcCCcccccccCCCcEEEEECCcCccHHHHHHHHHHH
Confidence 998764311 000 0223889999
Q ss_pred HhCCCcEEEEEeCCCCccCCCc----ccHHHHHHHHHHHHHHHhccCC
Q 005240 656 KGHGALSRLVLLPFEHHVYAAR----ENVMHVIWETDRWLQKYCLSNT 699 (706)
Q Consensus 656 ~~~~~~~~~~~~~~~~H~~~~~----~~~~~~~~~~~~f~~~~l~~~~ 699 (706)
+..|+++++++|||++|.|... ....+..+.+.+||+++|....
T Consensus 265 ~~~g~~~~l~~~~g~~H~~~~~~~~~~~~~~~~~~i~~fl~~~l~~~~ 312 (322)
T 3k6k_A 265 GAAGVSVELKIWPDMPHVFQMYGKFVNAADISIKEICHWISARISKLA 312 (322)
T ss_dssp HHTTCCEEEEEETTCCTTGGGGTTTCHHHHHHHHHHHHHHHTTCC---
T ss_pred HHCCCCEEEEEECCCccccccccccChHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999998632 2356889999999999987543
|
| >2zsh_A Probable gibberellin receptor GID1L1; plant hormone receptor, gibberellin, gibberellin signaling pathway, hydrolase, nucleus, receptor, developmental protein; HET: GA3; 1.80A {Arabidopsis thaliana} PDB: 2zsi_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=3.7e-15 Score=155.69 Aligned_cols=196 Identities=14% Similarity=0.099 Sum_probs=141.4
Q ss_pred CCCceEEEEEEccCCeEEEEEEEecCCCCC------------CCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCc
Q 005240 478 ASLQKEMIKYQRKDGVPLTATLYLPPGYDQ------------SKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTP 545 (706)
Q Consensus 478 ~~~~~~~~~~~~~dg~~i~~~l~~P~~~~~------------~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~ 545 (706)
..+..+.+.+.. +..+...+|.|+.... ...++.|+||++|||++..++. ... ...
T Consensus 68 ~~v~~~dv~~~~--~~~l~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~p~vv~~HGgg~~~g~~--------~~~--~~~ 135 (351)
T 2zsh_A 68 DGVFSFDVLIDR--RINLLSRVYRPAYADQEQPPSILDLEKPVDGDIVPVILFFHGGSFAHSSA--------NSA--IYD 135 (351)
T ss_dssp TTEEEEEEEEET--TTTEEEEEEEECCTTCSSCCCTTSTTCCCCSSSCEEEEEECCSTTTSCCT--------TBH--HHH
T ss_pred CCceEEEEEecC--CCCeEEEEEecCCccccccccccccccccCCCCceEEEEECCCcCcCCCC--------cch--hHH
Confidence 456777888876 4468888999987420 0123589999999987532111 100 012
Q ss_pred hHHHHHH-HCCeEEEEcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcC----CCCCC-cEEEEEechHHHHHHHH
Q 005240 546 TSSLIFL-ARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRG----VADPS-RIAVGGHSYGAFMTAHL 619 (706)
Q Consensus 546 ~~~~~l~-~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~----~id~~-~i~i~G~S~GG~~a~~~ 619 (706)
..+..|+ +.||+|+..++++..... ....++|+.++++|+.++. .+|++ ||+|+|+|+||++|+.+
T Consensus 136 ~~~~~la~~~g~~vv~~d~rg~~~~~--------~~~~~~D~~~~~~~l~~~~~~~~~~d~~~~i~l~G~S~GG~la~~~ 207 (351)
T 2zsh_A 136 TLCRRLVGLCKCVVVSVNYRRAPENP--------YPCAYDDGWIALNWVNSRSWLKSKKDSKVHIFLAGDSSGGNIAHNV 207 (351)
T ss_dssp HHHHHHHHHHTSEEEEECCCCTTTSC--------TTHHHHHHHHHHHHHHTCGGGCCTTTSSCEEEEEEETHHHHHHHHH
T ss_pred HHHHHHHHHcCCEEEEecCCCCCCCC--------CchhHHHHHHHHHHHHhCchhhcCCCCCCcEEEEEeCcCHHHHHHH
Confidence 3456777 689999998887642221 1245789999999998754 48999 99999999999999999
Q ss_pred HHhCCC---ceeEEEeccCCCCCCC-----------------------------------------------------CC
Q 005240 620 LAHAPH---LFCCGIARSGSYNKTL-----------------------------------------------------TP 643 (706)
Q Consensus 620 ~~~~p~---~~~a~v~~~~~~d~~~-----------------------------------------------------~~ 643 (706)
+.+.|+ +++++|+.+|.++... .|
T Consensus 208 a~~~~~~~~~v~~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~pP 287 (351)
T 2zsh_A 208 ALRAGESGIDVLGNILLNPMFGGNERTESEKSLDGKYFVTVRDRDWYWKAFLPEGEDREHPACNPFSPRGKSLEGVSFPK 287 (351)
T ss_dssp HHHHHTTTCCCCEEEEESCCCCCSSCCHHHHHHTTTSSCCHHHHHHHHHHHSCTTCCTTSTTTCTTSTTSCCCTTCCCCE
T ss_pred HHHhhccCCCeeEEEEECCccCCCcCChhhhhcCCCcccCHHHHHHHHHHhCCCCCCCCCcccCCCCCCccchhhCCCCC
Confidence 999888 8999999988754210 01
Q ss_pred cc--------c--hHHHHHHHHHhCCCcEEEEEeCCCCccCCC---cccHHHHHHHHHHHHHH
Q 005240 644 FG--------F--QAERFFDALKGHGALSRLVLLPFEHHVYAA---RENVMHVIWETDRWLQK 693 (706)
Q Consensus 644 ~~--------~--~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~---~~~~~~~~~~~~~f~~~ 693 (706)
.. . ...+++++|++.++++++++||+++|.+.. .....++.+.+.+||++
T Consensus 288 ~Lii~G~~D~~~~~~~~~~~~l~~~g~~~~~~~~~g~gH~~~~~~~~~~~~~~~~~i~~Fl~~ 350 (351)
T 2zsh_A 288 SLVVVAGLDLIRDWQLAYAEGLKKAGQEVKLMHLEKATVGFYLLPNNNHFHNVMDEISAFVNA 350 (351)
T ss_dssp EEEEEETTSTTHHHHHHHHHHHHHTTCCEEEEEETTCCTTTTSSSCSHHHHHHHHHHHHHHHC
T ss_pred EEEEEcCCCcchHHHHHHHHHHHHcCCCEEEEEECCCcEEEEecCCCHHHHHHHHHHHHHhcC
Confidence 00 0 123788999999999999999999998864 24567888899999875
|
| >1zi8_A Carboxymethylenebutenolidase; alpha and beta proteins, 3-D structure, serine esterase, HYD aromatic hydrocarbons, catabolism; 1.40A {Pseudomonas putida} PDB: 1zj5_A* 1zi9_A 1zi6_A 1zj4_A* 1din_A 1ziy_A* 1zic_A 1zix_A 1ggv_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=2.9e-16 Score=153.85 Aligned_cols=190 Identities=14% Similarity=0.067 Sum_probs=134.1
Q ss_pred EEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcC
Q 005240 483 EMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGP 562 (706)
Q Consensus 483 ~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~ 562 (706)
+.+++++.||..+.++++.|++ ++.|+||++||.+.. .. .....+..|+++||.|+.++
T Consensus 4 ~~~~~~~~~g~~l~~~~~~p~~------~~~p~vv~~hG~~~~-----------~~----~~~~~~~~l~~~g~~v~~~d 62 (236)
T 1zi8_A 4 EGISIQSYDGHTFGALVGSPAK------APAPVIVIAQDIFGV-----------NA----FMRETVSWLVDQGYAAVCPD 62 (236)
T ss_dssp TTCCEECTTSCEECEEEECCSS------CSEEEEEEECCTTBS-----------CH----HHHHHHHHHHHTTCEEEEEC
T ss_pred ceEEEecCCCCeEEEEEECCCC------CCCCEEEEEcCCCCC-----------CH----HHHHHHHHHHhCCcEEEecc
Confidence 3466777899999999999974 247999999996311 01 11245677888999999977
Q ss_pred CCCcC--CCCCCCC------------chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCcee
Q 005240 563 SIPII--GEGDKLP------------NDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFC 628 (706)
Q Consensus 563 ~~~~~--g~g~~~~------------~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~ 628 (706)
.++.. +.+.... ..........|+.++++++.++..++ .+|+++|+|+||++++.++.++| ++
T Consensus 63 ~~g~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~-~~i~l~G~S~Gg~~a~~~a~~~~--~~ 139 (236)
T 1zi8_A 63 LYARQAPGTALDPQDERQREQAYKLWQAFDMEAGVGDLEAAIRYARHQPYSN-GKVGLVGYSLGGALAFLVASKGY--VD 139 (236)
T ss_dssp GGGGTSTTCBCCTTCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTSSTTEE-EEEEEEEETHHHHHHHHHHHHTC--SS
T ss_pred ccccCCCcccccccchhhhhhhhhhhhccCcchhhHHHHHHHHHHHhccCCC-CCEEEEEECcCHHHHHHHhccCC--cc
Confidence 65332 1111111 01123456889999999998776555 69999999999999999999997 99
Q ss_pred EEEeccCCCCCCC--------CCcc---------c---hHHHHHHHHHhCCCcEEEEEeCCCCccCCCcc-------cHH
Q 005240 629 CGIARSGSYNKTL--------TPFG---------F---QAERFFDALKGHGALSRLVLLPFEHHVYAARE-------NVM 681 (706)
Q Consensus 629 a~v~~~~~~d~~~--------~~~~---------~---~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~-------~~~ 681 (706)
++++.+|...... .|.. . ..+++++.+...+ +++++++|+++|.+.... ...
T Consensus 140 ~~v~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~H~~~~~~~~~~~~~~~~ 218 (236)
T 1zi8_A 140 RAVGYYGVGLEKQLNKVPEVKHPALFHMGGQDHFVPAPSRQLITEGFGANP-LLQVHWYEEAGHSFARTGSSGYVASAAA 218 (236)
T ss_dssp EEEEESCSSGGGCGGGGGGCCSCEEEEEETTCTTSCHHHHHHHHHHHTTCT-TEEEEEETTCCTTTTCTTSTTCCHHHHH
T ss_pred EEEEecCcccccchhhhhhcCCCEEEEecCCCCCCCHHHHHHHHHHHHhCC-CceEEEECCCCcccccCCCCccCHHHHH
Confidence 9999888643211 1211 0 2237777776655 899999999999887432 235
Q ss_pred HHHHHHHHHHHHHhcc
Q 005240 682 HVIWETDRWLQKYCLS 697 (706)
Q Consensus 682 ~~~~~~~~f~~~~l~~ 697 (706)
+.++.+.+||+++++.
T Consensus 219 ~~~~~i~~fl~~~l~~ 234 (236)
T 1zi8_A 219 LANERTLDFLVPLQSR 234 (236)
T ss_dssp HHHHHHHHHHGGGCC-
T ss_pred HHHHHHHHHHHHhcCC
Confidence 7889999999999864
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.66 E-value=4.8e-14 Score=151.58 Aligned_cols=316 Identities=11% Similarity=0.052 Sum_probs=189.6
Q ss_pred CCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCC-ccccccccceEEecC
Q 005240 19 GPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD-ICLNAVFGSFVWVNN 97 (706)
Q Consensus 19 g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~-~~~~~~~~~~~wSpD 97 (706)
++.+.+..++.+.....++||| ++.++++.. ....|+++|+++++..+...... ..-...+..+.|+|+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~s~-~~~~~~~~~---------~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~ 180 (433)
T 3bws_A 111 ITHRFISRFKTGFQPKSVRFID-NTRLAIPLL---------EDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEH 180 (433)
T ss_dssp CSEEEEEEEECSSCBCCCEESS-SSEEEEEBT---------TSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGG
T ss_pred CcceEEEEEcCCCCceEEEEeC-CCeEEEEeC---------CCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCC
Confidence 5555555555555577899999 666666542 23569999999888776432110 000112567899999
Q ss_pred CcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCCc-eecCCC-
Q 005240 98 STLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTA-KDFGTP- 174 (706)
Q Consensus 98 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~-~~lt~~- 174 (706)
|+.++.... .+.|+++++ +++. ..+...
T Consensus 181 ~~~~~s~~~-------------------------------------------------d~~v~~~d~~~~~~~~~~~~~~ 211 (433)
T 3bws_A 181 NELWVSQMQ-------------------------------------------------ANAVHVFDLKTLAYKATVDLTG 211 (433)
T ss_dssp TEEEEEEGG-------------------------------------------------GTEEEEEETTTCCEEEEEECSS
T ss_pred CEEEEEECC-------------------------------------------------CCEEEEEECCCceEEEEEcCCC
Confidence 987665421 257888898 4443 334333
Q ss_pred ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCC
Q 005240 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (706)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~ 254 (706)
..+..++|+|||++|+++.... ..|++||+.+++........ ..+..+.|+|||+
T Consensus 212 ~~~~~~~~~~~~~~l~~~~~~~------------~~i~~~d~~~~~~~~~~~~~-------------~~~~~~~~~~~g~ 266 (433)
T 3bws_A 212 KWSKILLYDPIRDLVYCSNWIS------------EDISVIDRKTKLEIRKTDKI-------------GLPRGLLLSKDGK 266 (433)
T ss_dssp SSEEEEEEETTTTEEEEEETTT------------TEEEEEETTTTEEEEECCCC-------------SEEEEEEECTTSS
T ss_pred CCeeEEEEcCCCCEEEEEecCC------------CcEEEEECCCCcEEEEecCC-------------CCceEEEEcCCCC
Confidence 5778999999999997765432 47999999876554433221 1234789999998
Q ss_pred ceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCCC
Q 005240 255 STLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK 334 (706)
Q Consensus 255 ~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~ 334 (706)
. |+..... .+... ...+.|+++|+ .+++.............+.|+||++.+++.... ...|+++|+.++
T Consensus 267 ~-l~~~~~~-~~~~~---~~dg~i~~~d~---~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~---~~~v~v~d~~~~ 335 (433)
T 3bws_A 267 E-LYIAQFS-ASNQE---SGGGRLGIYSM---DKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMC---CSKIEVYDLKEK 335 (433)
T ss_dssp E-EEEEEEE-SCTTC---SCCEEEEEEET---TTTEEEEEEEEEECEEEEEECSSTTEEEEEETT---TTEEEEEETTTT
T ss_pred E-EEEEECC-CCccc---cCCCeEEEEEC---CCCcEEeeccCCCCcceEEECCCCCEEEEEecC---CCEEEEEECCCC
Confidence 6 6544322 11110 12346889998 556555554445567789999999888776422 336888888874
Q ss_pred CCCceeeecCcccccccCCCCCceEeccCCCEEEEeeeccCCc-ceEEEEecCCCCCCCCCCceeeeecCCCceeeeecc
Q 005240 335 DVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDE-QIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWES 413 (706)
Q Consensus 335 ~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~ 413 (706)
+........ .....+.|+|||+++++.....+.. ..+++ .| .....|+.+|+.+++....+..
T Consensus 336 --~~~~~~~~~-------~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~---~g----~~dg~v~~~d~~~~~~~~~~~~ 399 (433)
T 3bws_A 336 --KVQKSIPVF-------DKPNTIALSPDGKYLYVSCRGPNHPTEGYLK---KG----LVLGKVYVIDTTTDTVKEFWEA 399 (433)
T ss_dssp --EEEEEEECS-------SSEEEEEECTTSSEEEEEECCCCCTTTCTTS---CC----SSCCEEEEEETTTTEEEEEEEC
T ss_pred --cEEEEecCC-------CCCCeEEEcCCCCEEEEEecCCCcccccccc---cc----ccceEEEEEECCCCcEEEEecC
Confidence 233222211 1122477899999888775321000 00000 00 0112578889888876555443
Q ss_pred cchhhhhhhhhhccCCCceecccCCCEEEEEEecCCCCcEEEEEECC
Q 005240 414 NREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWP 460 (706)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~p~~v~~~~~~ 460 (706)
.. ....+.|+|||+.|+.+.... ..|++|++.
T Consensus 400 ~~------------~~~~~~~s~dg~~l~~~~~~d---~~i~v~~~~ 431 (433)
T 3bws_A 400 GN------------QPTGLDVSPDNRYLVISDFLD---HQIRVYRRD 431 (433)
T ss_dssp SS------------SEEEEEECTTSCEEEEEETTT---TEEEEEEET
T ss_pred CC------------CCceEEEcCCCCEEEEEECCC---CeEEEEEec
Confidence 21 112468999998887654322 457777754
|
| >3fcy_A Xylan esterase 1; alpha/beta hydrolase, carbohydrate esterase, CE7; 2.10A {Thermoanaerobacterium SP} | Back alignment and structure |
|---|
Probab=99.66 E-value=4.5e-15 Score=154.71 Aligned_cols=188 Identities=14% Similarity=0.088 Sum_probs=136.4
Q ss_pred CCCceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeE
Q 005240 478 ASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFA 557 (706)
Q Consensus 478 ~~~~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~ 557 (706)
..+..+.+++.+.+|..|+++++.|++ .++.|+||++||++.. ... + .....+++.||.
T Consensus 78 ~~~~~~~~~~~~~~g~~l~~~~~~P~~-----~~~~p~vv~~HG~g~~--------~~~---~-----~~~~~~~~~G~~ 136 (346)
T 3fcy_A 78 SFAECYDLYFTGVRGARIHAKYIKPKT-----EGKHPALIRFHGYSSN--------SGD---W-----NDKLNYVAAGFT 136 (346)
T ss_dssp TTEEEEEEEEECGGGCEEEEEEEEESC-----SSCEEEEEEECCTTCC--------SCC---S-----GGGHHHHTTTCE
T ss_pred CceEEEEEEEEcCCCCEEEEEEEecCC-----CCCcCEEEEECCCCCC--------CCC---h-----hhhhHHHhCCcE
Confidence 446788999999999999999999986 2358999999998532 111 1 122367789999
Q ss_pred EEEcCCCCcCCCCCC-------------------CCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHH
Q 005240 558 VLAGPSIPIIGEGDK-------------------LPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAH 618 (706)
Q Consensus 558 v~~~~~~~~~g~g~~-------------------~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~ 618 (706)
|+..+.+|..+.+.. .....+....+.|+.++++++.....+|++||+|+|+|+||++++.
T Consensus 137 v~~~D~rG~g~s~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~D~~~a~~~l~~~~~~d~~~i~l~G~S~GG~la~~ 216 (346)
T 3fcy_A 137 VVAMDVRGQGGQSQDVGGVTGNTLNGHIIRGLDDDADNMLFRHIFLDTAQLAGIVMNMPEVDEDRVGVMGPSQGGGLSLA 216 (346)
T ss_dssp EEEECCTTSSSSCCCCCCCSSCCSBCSSSTTTTSCGGGCHHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHH
T ss_pred EEEEcCCCCCCCCCCCcccCCCCcCcceeccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCcCcEEEEEcCHHHHHHHH
Confidence 999777754332221 1112245567899999999999888889999999999999999999
Q ss_pred HHHhCCCceeEEEeccCCCCCCC-------C---------------Ccc-------------------------------
Q 005240 619 LLAHAPHLFCCGIARSGSYNKTL-------T---------------PFG------------------------------- 645 (706)
Q Consensus 619 ~~~~~p~~~~a~v~~~~~~d~~~-------~---------------~~~------------------------------- 645 (706)
++.++|+ ++++++.+|...... . +..
T Consensus 217 ~a~~~p~-v~~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~P~lii~G 295 (346)
T 3fcy_A 217 CAALEPR-VRKVVSEYPFLSDYKRVWDLDLAKNAYQEITDYFRLFDPRHERENEVFTKLGYIDVKNLAKRIKGDVLMCVG 295 (346)
T ss_dssp HHHHSTT-CCEEEEESCSSCCHHHHHHTTCCCGGGHHHHHHHHHHCTTCTTHHHHHHHHGGGCHHHHGGGCCSEEEEEEE
T ss_pred HHHhCcc-ccEEEECCCcccCHHHHhhccccccchHHHHHHHHhcCCCcchHHHHHHHhCcccHHHHHHhcCCCEEEEee
Confidence 9999987 999999998753110 0 000
Q ss_pred -----chHHHHHHHH-HhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 005240 646 -----FQAERFFDAL-KGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQK 693 (706)
Q Consensus 646 -----~~~~~~~~~l-~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~~~ 693 (706)
... ....++ .....+++++++|+++|.+. .+..+.+.+||++
T Consensus 296 ~~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~gH~~~-----~~~~~~i~~fl~~ 343 (346)
T 3fcy_A 296 LMDQVCPP-STVFAAYNNIQSKKDIKVYPDYGHEPM-----RGFGDLAMQFMLE 343 (346)
T ss_dssp TTCSSSCH-HHHHHHHTTCCSSEEEEEETTCCSSCC-----TTHHHHHHHHHHT
T ss_pred CCCCcCCH-HHHHHHHHhcCCCcEEEEeCCCCCcCH-----HHHHHHHHHHHHH
Confidence 000 223333 33333799999999999987 3567889999987
|
| >4b6g_A Putative esterase; hydrolase, formaldehyde detoxification, alpha/beta serine HY; 1.40A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=99.65 E-value=4.8e-16 Score=157.15 Aligned_cols=194 Identities=12% Similarity=0.122 Sum_probs=130.0
Q ss_pred ceEEEEEEc-cCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEE
Q 005240 481 QKEMIKYQR-KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 559 (706)
Q Consensus 481 ~~~~~~~~~-~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~ 559 (706)
..+.+++.+ .+|.++...+|.|++++ .+++|+||++||++... ..|... ....+.+++.||+|+
T Consensus 21 ~~~~~~~~s~~~~~~~~~~v~~P~~~~---~~~~p~vv~lHG~~~~~--------~~~~~~----~~~~~~~~~~g~~vv 85 (283)
T 4b6g_A 21 SQQVWAHHAQTLQCEMKFAVYLPNNPE---NRPLGVIYWLSGLTCTE--------QNFITK----SGFQRYAAEHQVIVV 85 (283)
T ss_dssp EEEEEEEEETTTTEEEEEEEEECCCTT---CCCEEEEEEECCTTCCS--------HHHHHH----SCTHHHHHHHTCEEE
T ss_pred cEEEEEEechhhCCceEEEEEeCCCCC---CCCCCEEEEEcCCCCCc--------cchhhc----ccHHHHHhhCCeEEE
Confidence 344555554 47899999999999875 23599999999975321 111100 013455667899999
Q ss_pred EcCC--CCcC---------CCCCCCCc----h------hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHH
Q 005240 560 AGPS--IPII---------GEGDKLPN----D------RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAH 618 (706)
Q Consensus 560 ~~~~--~~~~---------g~g~~~~~----~------~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~ 618 (706)
+++. +|.. |.|..+.. . .+.....+++.. ++.+. +.+++|++|+|+||||++|+.
T Consensus 86 ~~d~~~rg~~~~~~~~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~~~-~~~~~~~~l~G~S~GG~~a~~ 161 (283)
T 4b6g_A 86 APDTSPRGEQVPNDDAYDLGQSAGFYLNATEQPWAANYQMYDYILNELPR---LIEKH-FPTNGKRSIMGHSMGGHGALV 161 (283)
T ss_dssp EECSSCCSTTSCCCSSTTSBTTBCTTSBCCSTTGGGTCBHHHHHHTHHHH---HHHHH-SCEEEEEEEEEETHHHHHHHH
T ss_pred EeccccccccccccccccccCCCcccccCccCcccchhhHHHHHHHHHHH---HHHHh-CCCCCCeEEEEEChhHHHHHH
Confidence 8764 2221 22222111 0 112222334433 33333 225689999999999999999
Q ss_pred HHHhCCCceeEEEeccCCCCCCCC----------------------------------Ccc---------c-h---HHHH
Q 005240 619 LLAHAPHLFCCGIARSGSYNKTLT----------------------------------PFG---------F-Q---AERF 651 (706)
Q Consensus 619 ~~~~~p~~~~a~v~~~~~~d~~~~----------------------------------~~~---------~-~---~~~~ 651 (706)
++.++|++|+++++.+|.++.... |.. . . ..++
T Consensus 162 ~a~~~p~~~~~~~~~s~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~li~~G~~D~~~~~~~~~~~~ 241 (283)
T 4b6g_A 162 LALRNQERYQSVSAFSPILSPSLVPWGEKAFTAYLGKDREKWQQYDANSLIQQGYKVQGMRIDQGLEDEFLPTQLRTEDF 241 (283)
T ss_dssp HHHHHGGGCSCEEEESCCCCGGGSHHHHHHHHHHHCSCGGGGGGGCHHHHHHHTCCCSCCEEEEETTCTTHHHHTCHHHH
T ss_pred HHHhCCccceeEEEECCccccccCcchhhhHHhhcCCchHHHHhcCHHHHHHhcccCCCEEEEecCCCccCcchhhHHHH
Confidence 999999999999999997653210 110 0 1 4588
Q ss_pred HHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHhc
Q 005240 652 FDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCL 696 (706)
Q Consensus 652 ~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~~~~l~ 696 (706)
+++|++.++++++.+|||++|.|. .+......+++|+.++|+
T Consensus 242 ~~~l~~~g~~~~~~~~~g~~H~~~---~~~~~l~~~l~~~~~~l~ 283 (283)
T 4b6g_A 242 IETCRAANQPVDVRFHKGYDHSYY---FIASFIGEHIAYHAAFLK 283 (283)
T ss_dssp HHHHHHHTCCCEEEEETTCCSSHH---HHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHcCCCceEEEeCCCCcCHh---HHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999874 245677889999998873
|
| >2fuk_A XC6422 protein; A/B hydrolase, structural genomics, X-RAY diffraction; 1.60A {Xanthomonas campestris} SCOP: c.69.1.36 | Back alignment and structure |
|---|
Probab=99.65 E-value=8.5e-15 Score=141.65 Aligned_cols=194 Identities=12% Similarity=0.063 Sum_probs=136.5
Q ss_pred CceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEE
Q 005240 480 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 559 (706)
Q Consensus 480 ~~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~ 559 (706)
...+.+++++.+| .+.++++.|++-.++ +.|+||++||++... +.. .......++..|+++||.|+
T Consensus 8 ~~~~~~~~~~~~g-~~~~~~~~p~~~~~~---~~~~vv~~HG~~~~~--------~~~--~~~~~~~~~~~l~~~g~~v~ 73 (220)
T 2fuk_A 8 TESAALTLDGPVG-PLDVAVDLPEPDVAV---QPVTAIVCHPLSTEG--------GSM--HNKVVTMAARALRELGITVV 73 (220)
T ss_dssp SSCEEEEEEETTE-EEEEEEECCCTTSCC---CSEEEEEECSCTTTT--------CST--TCHHHHHHHHHHHTTTCEEE
T ss_pred ccceEEEEeCCCC-eEEEEEEeCCCCCcc---ccCEEEEECCCCCcC--------Ccc--cchHHHHHHHHHHHCCCeEE
Confidence 4668899999888 999999999762111 269999999965311 000 00001235567888999999
Q ss_pred EcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCCC
Q 005240 560 AGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNK 639 (706)
Q Consensus 560 ~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d~ 639 (706)
.++.+ |+|.+............|+.++++++.++. +.++|+++|+|+||++++.++.+. +++++|+.+|..+.
T Consensus 74 ~~d~~---g~g~s~~~~~~~~~~~~d~~~~~~~l~~~~--~~~~i~l~G~S~Gg~~a~~~a~~~--~v~~~v~~~~~~~~ 146 (220)
T 2fuk_A 74 RFNFR---SVGTSAGSFDHGDGEQDDLRAVAEWVRAQR--PTDTLWLAGFSFGAYVSLRAAAAL--EPQVLISIAPPAGR 146 (220)
T ss_dssp EECCT---TSTTCCSCCCTTTHHHHHHHHHHHHHHHHC--TTSEEEEEEETHHHHHHHHHHHHH--CCSEEEEESCCBTT
T ss_pred EEecC---CCCCCCCCcccCchhHHHHHHHHHHHHhcC--CCCcEEEEEECHHHHHHHHHHhhc--cccEEEEecccccc
Confidence 97765 444443332333567899999999998874 667999999999999999999888 89999999987653
Q ss_pred CC-------CCcc---------chHHHHHHHHHh-CCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHhcc
Q 005240 640 TL-------TPFG---------FQAERFFDALKG-HGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCLS 697 (706)
Q Consensus 640 ~~-------~~~~---------~~~~~~~~~l~~-~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~~~~l~~ 697 (706)
.. .|.. ... +..+++.+ .+.+++++++++++|.+.. ...++.+.+.+||+++|..
T Consensus 147 ~~~~~~~~~~p~l~i~g~~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~H~~~~--~~~~~~~~i~~~l~~~l~~ 218 (220)
T 2fuk_A 147 WDFSDVQPPAQWLVIQGDADEIVDP-QAVYDWLETLEQQPTLVRMPDTSHFFHR--KLIDLRGALQHGVRRWLPA 218 (220)
T ss_dssp BCCTTCCCCSSEEEEEETTCSSSCH-HHHHHHHTTCSSCCEEEEETTCCTTCTT--CHHHHHHHHHHHHGGGCSS
T ss_pred hhhhhcccCCcEEEEECCCCcccCH-HHHHHHHHHhCcCCcEEEeCCCCceehh--hHHHHHHHHHHHHHHHhhc
Confidence 21 1211 111 22233333 2356899999999999875 3567889999999998864
|
| >1jkm_A Brefeldin A esterase; serine hydrolase, degradation of brefeldin A, alpha/beta hydrolase family; 1.85A {Bacillus subtilis} SCOP: c.69.1.2 | Back alignment and structure |
|---|
Probab=99.65 E-value=3.1e-15 Score=156.69 Aligned_cols=197 Identities=13% Similarity=-0.001 Sum_probs=143.1
Q ss_pred CCceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEE
Q 005240 479 SLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAV 558 (706)
Q Consensus 479 ~~~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v 558 (706)
.+..+.+++.+.+|..+.+.+|.|.+. . .++|+||++|||++.. ++.... .....+..|++.||+|
T Consensus 79 ~~~~~~~~~~~~~g~~l~~~v~~p~~~--~--~~~p~vv~iHGgg~~~--------g~~~~~--~~~~~~~~la~~g~~v 144 (361)
T 1jkm_A 79 DVETSTETILGVDGNEITLHVFRPAGV--E--GVLPGLVYTHGGGMTI--------LTTDNR--VHRRWCTDLAAAGSVV 144 (361)
T ss_dssp CEEEEEEEEECTTSCEEEEEEEEETTC--C--SCEEEEEEECCSTTTS--------SCSSSH--HHHHHHHHHHHTTCEE
T ss_pred CceeeeeeeecCCCCeEEEEEEeCCCC--C--CCCeEEEEEcCCcccc--------CCCccc--chhHHHHHHHhCCCEE
Confidence 356678888888888999999999862 1 1489999999986532 111100 0113466788899999
Q ss_pred EEcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcC---CCCCCcEEEEEechHHHHHHHHHHh-----CCCceeEE
Q 005240 559 LAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRG---VADPSRIAVGGHSYGAFMTAHLLAH-----APHLFCCG 630 (706)
Q Consensus 559 ~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~---~id~~~i~i~G~S~GG~~a~~~~~~-----~p~~~~a~ 630 (706)
+..++++..|.. ........+.|+..+++|+.+.. .+| +|+|+|+|+||++++.++.+ .|++|+++
T Consensus 145 v~~d~r~~gg~~----~~~~~~~~~~D~~~~~~~v~~~~~~~~~~--~i~l~G~S~Gg~~a~~~a~~~~~~~~p~~i~~~ 218 (361)
T 1jkm_A 145 VMVDFRNAWTAE----GHHPFPSGVEDCLAAVLWVDEHRESLGLS--GVVVQGESGGGNLAIATTLLAKRRGRLDAIDGV 218 (361)
T ss_dssp EEEECCCSEETT----EECCTTHHHHHHHHHHHHHHHTHHHHTEE--EEEEEEETHHHHHHHHHHHHHHHTTCGGGCSEE
T ss_pred EEEecCCCCCCC----CCCCCCccHHHHHHHHHHHHhhHHhcCCC--eEEEEEECHHHHHHHHHHHHHHhcCCCcCcceE
Confidence 998888654321 11112345789999999998752 244 99999999999999999998 77899999
Q ss_pred EeccCCCCCC----------------------------------------------CCCcc-------------------
Q 005240 631 IARSGSYNKT----------------------------------------------LTPFG------------------- 645 (706)
Q Consensus 631 v~~~~~~d~~----------------------------------------------~~~~~------------------- 645 (706)
|+.+|..+.. ..|..
T Consensus 219 il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~l~P~Lii~G~~ 298 (361)
T 1jkm_A 219 YASIPYISGGYAWDHERRLTELPSLVENDGYFIENGGMALLVRAYDPTGEHAEDPIAWPYFASEDELRGLPPFVVAVNEL 298 (361)
T ss_dssp EEESCCCCCCTTSCHHHHHHHCTHHHHTTTSSSCHHHHHHHHHHHSSSSTTTTCTTTCGGGCCHHHHTTCCCEEEEEETT
T ss_pred EEECCccccccccccccccccCcchhhccCcccCHHHHHHHHHHhCCCCCCCCCcccCccccChhhHcCCCceEEEEcCc
Confidence 9999987650 00110
Q ss_pred --c--hHHHHHHHHHhCCCcEEEEEeCCCCccCC-Cc----ccH-HHHHHHHHHHHHHHh
Q 005240 646 --F--QAERFFDALKGHGALSRLVLLPFEHHVYA-AR----ENV-MHVIWETDRWLQKYC 695 (706)
Q Consensus 646 --~--~~~~~~~~l~~~~~~~~~~~~~~~~H~~~-~~----~~~-~~~~~~~~~f~~~~l 695 (706)
+ +..+++++|+..++++++++|||++|.+. .. ... .+..+.+.+||+++.
T Consensus 299 D~~~~~~~~~~~~l~~~g~~~~l~~~~g~~H~~~~~~~~~~~~~~~~~~~~i~~fl~~~~ 358 (361)
T 1jkm_A 299 DPLRDEGIAFARRLARAGVDVAARVNIGLVHGADVIFRHWLPAALESTVRDVAGFAADRA 358 (361)
T ss_dssp CTTHHHHHHHHHHHHHTTCCEEEEEETTCCTTHHHHSGGGCHHHHHHHHHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHHHHcCCCEEEEEeCCCccCccccccccccHHHHHHHHHHHHHHHHhh
Confidence 0 12288999999999999999999999876 21 233 678899999999874
|
| >3trd_A Alpha/beta hydrolase; cellular processes; 1.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.64 E-value=7.1e-15 Score=140.94 Aligned_cols=186 Identities=15% Similarity=0.074 Sum_probs=126.9
Q ss_pred ceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEE
Q 005240 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 560 (706)
Q Consensus 481 ~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~ 560 (706)
..|.+.+++.|| .++++++.|++ .++.|+||++||++... .. ........++..|+++||.|+.
T Consensus 5 ~~~~~~~~~~~g-~l~~~~~~p~~-----~~~~~~vv~~HG~~~~~--------~~--~~~~~~~~~~~~l~~~g~~v~~ 68 (208)
T 3trd_A 5 TNEDFLIQGPVG-QLEVMITRPKG-----IEKSVTGIICHPHPLHG--------GT--MNNKVVTTLAKALDELGLKTVR 68 (208)
T ss_dssp SSSCEEEECSSS-EEEEEEECCSS-----CCCSEEEEEECSCGGGT--------CC--TTCHHHHHHHHHHHHTTCEEEE
T ss_pred ccceEEEECCCc-eEEEEEEcCCC-----CCCCCEEEEEcCCCCCC--------Cc--cCCchHHHHHHHHHHCCCEEEE
Confidence 456788999999 99999999875 12469999999964211 00 0000012456778889999999
Q ss_pred cCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCCCC
Q 005240 561 GPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKT 640 (706)
Q Consensus 561 ~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d~~ 640 (706)
++.+ |+|.+...........+|+.++++++.++ .+.++|+++|+|+||.+++.++ ++| +++++++.+|..+..
T Consensus 69 ~d~~---g~g~s~~~~~~~~~~~~d~~~~~~~l~~~--~~~~~i~l~G~S~Gg~~a~~~a-~~~-~v~~~v~~~~~~~~~ 141 (208)
T 3trd_A 69 FNFR---GVGKSQGRYDNGVGEVEDLKAVLRWVEHH--WSQDDIWLAGFSFGAYISAKVA-YDQ-KVAQLISVAPPVFYE 141 (208)
T ss_dssp ECCT---TSTTCCSCCCTTTHHHHHHHHHHHHHHHH--CTTCEEEEEEETHHHHHHHHHH-HHS-CCSEEEEESCCTTSG
T ss_pred EecC---CCCCCCCCccchHHHHHHHHHHHHHHHHh--CCCCeEEEEEeCHHHHHHHHHh-ccC-CccEEEEeccccccC
Confidence 7775 44444333223345688999999999887 4458999999999999999999 776 899999999876522
Q ss_pred C--------CCcc---------chHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHH
Q 005240 641 L--------TPFG---------FQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWL 691 (706)
Q Consensus 641 ~--------~~~~---------~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~ 691 (706)
. .|.. ...+...+.++..+..++++++++++|.+... ..++.+.+.+||
T Consensus 142 ~~~~~~~~~~p~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~--~~~~~~~i~~fl 207 (208)
T 3trd_A 142 GFASLTQMASPWLIVQGDQDEVVPFEQVKAFVNQISSPVEFVVMSGASHFFHGR--LIELRELLVRNL 207 (208)
T ss_dssp GGTTCCSCCSCEEEEEETTCSSSCHHHHHHHHHHSSSCCEEEEETTCCSSCTTC--HHHHHHHHHHHH
T ss_pred CchhhhhcCCCEEEEECCCCCCCCHHHHHHHHHHccCceEEEEeCCCCCccccc--HHHHHHHHHHHh
Confidence 1 1211 11223333333444448999999999998743 356666666665
|
| >1l7a_A Cephalosporin C deacetylase; structural genomics, alpha-beta-alpha sandwich, PSI, protein structure initiative; 1.50A {Bacillus subtilis} SCOP: c.69.1.25 PDB: 1odt_C 1ods_A 3fvt_A 3fvr_A 3fyu_A* 2xlb_A 2xlc_A 3fyt_A* 3fyu_B* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.6e-14 Score=148.18 Aligned_cols=193 Identities=15% Similarity=0.094 Sum_probs=134.9
Q ss_pred CCCceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeE
Q 005240 478 ASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFA 557 (706)
Q Consensus 478 ~~~~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~ 557 (706)
..++.+.+++.+.+|..|+++++.|++ .++.|+||++||++.. .. ..+.....|++.||.
T Consensus 52 ~~~~~~~~~~~~~~g~~i~~~~~~P~~-----~~~~p~vv~~HG~~~~-------~~--------~~~~~~~~l~~~g~~ 111 (318)
T 1l7a_A 52 DGVKVYRLTYKSFGNARITGWYAVPDK-----EGPHPAIVKYHGYNAS-------YD--------GEIHEMVNWALHGYA 111 (318)
T ss_dssp SSEEEEEEEEEEGGGEEEEEEEEEESS-----CSCEEEEEEECCTTCC-------SG--------GGHHHHHHHHHTTCE
T ss_pred CCeEEEEEEEEccCCCEEEEEEEeeCC-----CCCccEEEEEcCCCCC-------CC--------CCcccccchhhCCcE
Confidence 345778899998899999999999976 2348999999997421 00 012234467889999
Q ss_pred EEEcCCCCcCCCCCCC-----------------CchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHH
Q 005240 558 VLAGPSIPIIGEGDKL-----------------PNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLL 620 (706)
Q Consensus 558 v~~~~~~~~~g~g~~~-----------------~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~ 620 (706)
|+.+++++........ ....+....+.|+.++++|+.++..+|+++|+++|+|+||.+++.++
T Consensus 112 v~~~d~rg~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a 191 (318)
T 1l7a_A 112 TFGMLVRGQQRSEDTSISPHGHALGWMTKGILDKDTYYYRGVYLDAVRALEVISSFDEVDETRIGVTGGSQGGGLTIAAA 191 (318)
T ss_dssp EEEECCTTTSSSCCCCCCSSCCSSSSTTTTTTCTTTCHHHHHHHHHHHHHHHHHHSTTEEEEEEEEEEETHHHHHHHHHH
T ss_pred EEEecCCCCCCCCCcccccCCccccceeccCCCHHHHHHHHHHHHHHHHHHHHHhCCCcccceeEEEecChHHHHHHHHh
Confidence 9998876543322111 00112456789999999999998778999999999999999999999
Q ss_pred HhCCCceeEEEeccCCCCCC-----------C------------------------------------CCcc--------
Q 005240 621 AHAPHLFCCGIARSGSYNKT-----------L------------------------------------TPFG-------- 645 (706)
Q Consensus 621 ~~~p~~~~a~v~~~~~~d~~-----------~------------------------------------~~~~-------- 645 (706)
.++|+ ++++++.+|..... . .|..
T Consensus 192 ~~~~~-~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~g~~D~ 270 (318)
T 1l7a_A 192 ALSDI-PKAAVADYPYLSNFERAIDVALEQPYLEINSFFRRNGSPETEVQAMKTLSYFDIMNLADRVKVPVLMSIGLIDK 270 (318)
T ss_dssp HHCSC-CSEEEEESCCSCCHHHHHHHCCSTTTTHHHHHHHHSCCHHHHHHHHHHHHTTCHHHHGGGCCSCEEEEEETTCS
T ss_pred ccCCC-ccEEEecCCcccCHHHHHhcCCcCccHHHHHHHhccCCcccHHHHHHhhccccHHHHHhhCCCCEEEEeccCCC
Confidence 99975 67777777754310 0 0000
Q ss_pred -chHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHhc
Q 005240 646 -FQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCL 696 (706)
Q Consensus 646 -~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~~~~l~ 696 (706)
...+...+..+....++++++||+++|... .+..+.+.+||+++|+
T Consensus 271 ~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~-----~~~~~~~~~fl~~~l~ 317 (318)
T 1l7a_A 271 VTPPSTVFAAYNHLETKKELKVYRYFGHEYI-----PAFQTEKLAFFKQILK 317 (318)
T ss_dssp SSCHHHHHHHHHHCCSSEEEEEETTCCSSCC-----HHHHHHHHHHHHHHHC
T ss_pred CCCcccHHHHHhhcCCCeeEEEccCCCCCCc-----chhHHHHHHHHHHHhC
Confidence 000122223333444689999999999832 3678999999999885
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.64 E-value=2e-13 Score=140.94 Aligned_cols=281 Identities=14% Similarity=0.099 Sum_probs=173.8
Q ss_pred CCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCcee-ecccCCCccccccccceEEecCCcEEEEEec
Q 005240 28 PDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAK-PLFESPDICLNAVFGSFVWVNNSTLLIFTIP 106 (706)
Q Consensus 28 ~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~-~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~ 106 (706)
.....+..+.|||||+.|+... ...|.++++++++.. .+...........+..+.|+|||+.|+....
T Consensus 49 ~h~~~v~~~~~~~~~~~l~~~~-----------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 117 (337)
T 1gxr_A 49 NHGEVVCAVTISNPTRHVYTGG-----------KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGE 117 (337)
T ss_dssp CCSSCCCEEEECSSSSEEEEEC-----------BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEES
T ss_pred cCCCceEEEEEecCCcEEEEcC-----------CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcC
Confidence 3445688999999999998853 357778888765422 2211000001123778999999998887642
Q ss_pred CCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccC-CCc---eecCCC-ceEeeee
Q 005240 107 SSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD-GTA---KDFGTP-AVYTAVE 181 (706)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~-g~~---~~lt~~-~~~~~~~ 181 (706)
.+.|.++++. ++. ..+... ..+..++
T Consensus 118 -------------------------------------------------d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~ 148 (337)
T 1gxr_A 118 -------------------------------------------------ASTLSIWDLAAPTPRIKAELTSSAPACYALA 148 (337)
T ss_dssp -------------------------------------------------SSEEEEEECCCC--EEEEEEECSSSCEEEEE
T ss_pred -------------------------------------------------CCcEEEEECCCCCcceeeecccCCCceEEEE
Confidence 1577888884 342 223333 5678999
Q ss_pred eCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEE
Q 005240 182 PSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVE 261 (706)
Q Consensus 182 ~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~ 261 (706)
|+|||+.|+..... ..|.+|++.+++......... ..+..+.|+||++. |+...
T Consensus 149 ~~~~~~~l~~~~~d-------------g~v~~~d~~~~~~~~~~~~~~------------~~i~~~~~~~~~~~-l~~~~ 202 (337)
T 1gxr_A 149 ISPDSKVCFSCCSD-------------GNIAVWDLHNQTLVRQFQGHT------------DGASCIDISNDGTK-LWTGG 202 (337)
T ss_dssp ECTTSSEEEEEETT-------------SCEEEEETTTTEEEEEECCCS------------SCEEEEEECTTSSE-EEEEE
T ss_pred ECCCCCEEEEEeCC-------------CcEEEEeCCCCceeeeeeccc------------CceEEEEECCCCCE-EEEEe
Confidence 99999999876543 379999998765443322211 12447899999986 55332
Q ss_pred eccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceee
Q 005240 262 AQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVL 341 (706)
Q Consensus 262 ~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l 341 (706)
. .+.|+++|+ .+++..........+..+.|+||++.|++... ...|+++|+.++ +...+
T Consensus 203 -~-----------dg~i~~~d~---~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----~~~i~~~~~~~~--~~~~~ 261 (337)
T 1gxr_A 203 -L-----------DNTVRSWDL---REGRQLQQHDFTSQIFSLGYCPTGEWLAVGME----SSNVEVLHVNKP--DKYQL 261 (337)
T ss_dssp -T-----------TSEEEEEET---TTTEEEEEEECSSCEEEEEECTTSSEEEEEET----TSCEEEEETTSS--CEEEE
T ss_pred -c-----------CCcEEEEEC---CCCceEeeecCCCceEEEEECCCCCEEEEEcC----CCcEEEEECCCC--CeEEE
Confidence 1 135888888 55555444556677888999999999887652 224777787774 22332
Q ss_pred ecCcccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeeecccchhhhhh
Q 005240 342 FDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFET 421 (706)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~ 421 (706)
.... . ....+.|+|||++|+..... ..+..+++.+++........
T Consensus 262 ~~~~-~------~v~~~~~~~~~~~l~~~~~d---------------------g~i~~~~~~~~~~~~~~~~~------- 306 (337)
T 1gxr_A 262 HLHE-S------CVLSLKFAYCGKWFVSTGKD---------------------NLLNAWRTPYGASIFQSKES------- 306 (337)
T ss_dssp CCCS-S------CEEEEEECTTSSEEEEEETT---------------------SEEEEEETTTCCEEEEEECS-------
T ss_pred cCCc-c------ceeEEEECCCCCEEEEecCC---------------------CcEEEEECCCCeEEEEecCC-------
Confidence 1110 1 12247789999988765421 13556777776654332211
Q ss_pred hhhhccCCCceecccCCCEEEEEEecCCCCcEEEEEEC
Q 005240 422 AVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSW 459 (706)
Q Consensus 422 ~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~p~~v~~~~~ 459 (706)
.......|+||++.|+....+. .|++|++
T Consensus 307 -----~~v~~~~~s~~~~~l~~~~~dg----~i~iw~~ 335 (337)
T 1gxr_A 307 -----SSVLSCDISVDDKYIVTGSGDK----KATVYEV 335 (337)
T ss_dssp -----SCEEEEEECTTSCEEEEEETTS----CEEEEEE
T ss_pred -----CcEEEEEECCCCCEEEEecCCC----eEEEEEE
Confidence 1122468999998777655443 3666663
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=99.63 E-value=5.1e-14 Score=147.34 Aligned_cols=289 Identities=13% Similarity=0.099 Sum_probs=160.1
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~ 111 (706)
.+..++|||||++||-.+.. ...--...|++++..++................+..++|+||++.|+.. .
T Consensus 44 ~V~~v~fSpDG~~las~s~d----~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s-~----- 113 (357)
T 4g56_B 44 QIGAVRYRRDGALLLAASSL----SSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVAS-D----- 113 (357)
T ss_dssp EEEEEEECSSSCEEEEEECS----SSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEE-T-----
T ss_pred CEEEEEECCCCCEEEEEcCC----CCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEE-C-----
Confidence 57889999999999887641 1111135788888776654321110000011237789999999865532 1
Q ss_pred CCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCCcee---c--CCC-ceEeeeeeCC
Q 005240 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKD---F--GTP-AVYTAVEPSP 184 (706)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~~~---l--t~~-~~~~~~~~Sp 184 (706)
.+.|.++|+ +++... + ... ..+..++|+|
T Consensus 114 --------------------------------------------dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp 149 (357)
T 4g56_B 114 --------------------------------------------SGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFS 149 (357)
T ss_dssp --------------------------------------------TSCEEEC--------CCCCEEECCCSSCEEEEEECS
T ss_pred --------------------------------------------CCEEEEeeccccceeEEEeeccCCCCCCEEEEEECC
Confidence 135666676 442211 1 122 5788999999
Q ss_pred CCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEecc
Q 005240 185 DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQD 264 (706)
Q Consensus 185 DG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~ 264 (706)
||++|+..+.. ..|.+||+.+++......... ..+..++|+|++...++ ....+
T Consensus 150 dg~~l~sgs~d-------------g~v~iwd~~~~~~~~~~~~h~------------~~v~~v~~s~~~~~~~~-s~~~d 203 (357)
T 4g56_B 150 DGTQAVSGGKD-------------FSVKVWDLSQKAVLKSYNAHS------------SEVNCVAACPGKDTIFL-SCGED 203 (357)
T ss_dssp SSSEEEEEETT-------------SCEEEEETTTTEEEEEECCCS------------SCEEEEEECTTCSSCEE-EEETT
T ss_pred CCCEEEEEeCC-------------CeEEEEECCCCcEEEEEcCCC------------CCEEEEEEccCCCceee-eeccC
Confidence 99999765543 379999998765443322211 12447899999976233 32211
Q ss_pred CCCCccccCccceeeeecCCCCCCCCceE-Ee--ecccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceee
Q 005240 265 RGDANVEVSPRDIIYTQPAEPAEGEKPEI-LH--KLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVL 341 (706)
Q Consensus 265 ~~~~~~~~~~~~~l~~~d~~~~~~~~~~~-l~--~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l 341 (706)
..|.+||+ .+++... +. .....+..+.|+|++..++...... ..|.++|+.++ +....
T Consensus 204 -----------g~v~~wd~---~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d---~~i~~wd~~~~--~~~~~ 264 (357)
T 4g56_B 204 -----------GRILLWDT---RKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDET---GNVSLVNIKNP--DSAQT 264 (357)
T ss_dssp -----------SCEEECCT---TSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESS---SCEEEEESSCG--GGCEE
T ss_pred -----------CceEEEEC---CCCceeeeeeeccccccccchhhhhcccceEEEeecc---cceeEEECCCC--cEeEE
Confidence 24778888 4444332 22 2345577889999965544332222 24667777764 22222
Q ss_pred ecCcccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeeecccchhhhhh
Q 005240 342 FDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFET 421 (706)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~ 421 (706)
+...... ...+.|+|+|+.++++... + ..+..+|+.+++..+...-.
T Consensus 265 ~~~~~~~------v~~l~~sp~~~~~lasgs~------------D--------~~i~iwd~~~~~~~~~~~H~------- 311 (357)
T 4g56_B 265 SAVHSQN------ITGLAYSYHSSPFLASISE------------D--------CTVAVLDADFSEVFRDLSHR------- 311 (357)
T ss_dssp ECCCSSC------EEEEEECSSSSCCEEEEET------------T--------SCEEEECTTSCEEEEECCCS-------
T ss_pred Eecccee------EEEEEEcCCCCCEEEEEeC------------C--------CEEEEEECCCCcEeEECCCC-------
Confidence 2221111 2247789998655444321 1 13666788777654443211
Q ss_pred hhhhccCCCceeccc-CCCEEEEEEecCCCCcEEEEEECCC
Q 005240 422 AVALVFGQGEEDINL-NQLKILTSKESKTEITQYHILSWPL 461 (706)
Q Consensus 422 ~~~~~~~~~~~~~s~-Dg~~l~~~~~~~~~p~~v~~~~~~~ 461 (706)
.....++||| |++.|+....+. .|++|++.+
T Consensus 312 -----~~V~~vafsP~d~~~l~s~s~Dg----~v~iW~~~~ 343 (357)
T 4g56_B 312 -----DFVTGVAWSPLDHSKFTTVGWDH----KVLHHHLPS 343 (357)
T ss_dssp -----SCEEEEEECSSSTTEEEEEETTS----CEEEEECC-
T ss_pred -----CCEEEEEEeCCCCCEEEEEcCCC----eEEEEECCC
Confidence 1223578998 777666554444 388998754
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.6e-13 Score=153.36 Aligned_cols=274 Identities=12% Similarity=0.147 Sum_probs=172.8
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~ 111 (706)
.+..+.|+|||+.|+.... + ..|.+++..+...+.+..+.. .+..++|+|||+.|+..+.+
T Consensus 264 ~v~~v~~~~d~~~l~~~~~--------d--~~i~~w~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l~t~~~d---- 324 (577)
T 2ymu_A 264 SVNGVAFRPDGQTIASASD--------D--KTVKLWNRNGQLLQTLTGHSS-----SVWGVAFSPDGQTIASASDD---- 324 (577)
T ss_dssp CEEEEEECTTSSEEEEEET--------T--SCEEEEETTSCEEEEECCCSS-----CEEEEEECTTSSEEEEEETT----
T ss_pred CEEEEEEcCCCCEEEEEeC--------C--CEEEEEeCCCcEEEEEecCCC-----CeEEEEECCCCCEEEEEeCC----
Confidence 5788999999999987643 2 456677776655555543322 26788999999998876421
Q ss_pred CCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCC-CceecCCC-ceEeeeeeCCCCcEE
Q 005240 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TAKDFGTP-AVYTAVEPSPDQKYV 189 (706)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g-~~~~lt~~-~~~~~~~~SpDG~~i 189 (706)
+.|.++++++ ....+... ..+..++|+|||++|
T Consensus 325 ---------------------------------------------~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 359 (577)
T 2ymu_A 325 ---------------------------------------------KTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTI 359 (577)
T ss_dssp ---------------------------------------------SCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEE
T ss_pred ---------------------------------------------CeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEE
Confidence 3566667766 45555544 677889999999999
Q ss_pred EEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCc
Q 005240 190 LITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDAN 269 (706)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~ 269 (706)
+..... ..+.+|+..+.....+.... ..+..++|+|||+. |+... .
T Consensus 360 ~~~~~d-------------g~v~~~~~~~~~~~~~~~~~-------------~~v~~~~~s~dg~~-l~~~~-~------ 405 (577)
T 2ymu_A 360 ASASDD-------------KTVKLWNRNGQLLQTLTGHS-------------SSVRGVAFSPDGQT-IASAS-D------ 405 (577)
T ss_dssp EEEETT-------------SEEEEEETTCCEEEEEECCS-------------SCEEEEEECTTSSC-EEEEE-T------
T ss_pred EEEeCC-------------CEEEEEcCCCCEEEEecCCC-------------CCeEEEEECCCCCE-EEEEe-C------
Confidence 866543 37889998877766665432 12457899999997 65332 1
Q ss_pred cccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCccccc
Q 005240 270 VEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENV 349 (706)
Q Consensus 270 ~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~ 349 (706)
...|.++|. .+...+.+......+..+.|+||++.|+..+.+ + .|.++|+++. ....+.. .-.
T Consensus 406 -----d~~v~~~~~---~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d--~--~v~~w~~~~~--~~~~~~~-~~~-- 468 (577)
T 2ymu_A 406 -----DKTVKLWNR---NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDD--K--TVKLWNRNGQ--LLQTLTG-HSS-- 468 (577)
T ss_dssp -----TSEEEEECT---TCCEEEEEECCSSCEEEEEECTTSSEEEEEETT--S--EEEEEETTSC--EEEEEEC-CSS--
T ss_pred -----CCEEEEEeC---CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCC--C--EEEEEECCCC--EEEEEcC-CCC--
Confidence 124778887 454455666677788899999999998876522 2 3555666541 2222211 111
Q ss_pred ccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeeecccchhhhhhhhhhccCC
Q 005240 350 YSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQ 429 (706)
Q Consensus 350 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~ 429 (706)
....+.|+|||++|+.... ++ .+..+|. +|+..+.+.... ...
T Consensus 469 ----~v~~~~~spd~~~las~~~----d~-----------------~i~iw~~-~~~~~~~~~~h~-----------~~v 511 (577)
T 2ymu_A 469 ----SVRGVAFSPDGQTIASASD----DK-----------------TVKLWNR-NGQLLQTLTGHS-----------SSV 511 (577)
T ss_dssp ----CEEEEEECTTSCEEEEEET----TS-----------------EEEEEET-TSCEEEEEECCS-----------SCE
T ss_pred ----CEEEEEEcCCCCEEEEEeC----CC-----------------EEEEEcC-CCCEEEEEeCCC-----------CCE
Confidence 1123678999999876542 11 2444454 343322222211 112
Q ss_pred CceecccCCCEEEEEEecCCCCcEEEEEECCC
Q 005240 430 GEEDINLNQLKILTSKESKTEITQYHILSWPL 461 (706)
Q Consensus 430 ~~~~~s~Dg~~l~~~~~~~~~p~~v~~~~~~~ 461 (706)
..+.|||||+.|+....+ ..|++||..+
T Consensus 512 ~~l~~s~dg~~l~s~~~d----g~v~lwd~~~ 539 (577)
T 2ymu_A 512 RGVAFSPDGQTIASASDD----KTVKLWNRNG 539 (577)
T ss_dssp EEEEECTTSSCEEEEETT----SEEEEECTTS
T ss_pred EEEEEcCCCCEEEEEECc----CEEEEEeCCC
Confidence 346899999877755433 3588998543
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.63 E-value=6.3e-14 Score=141.46 Aligned_cols=238 Identities=9% Similarity=0.039 Sum_probs=164.8
Q ss_pred ceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeecccccccc----CCceeEEEEEcCCCceeecccCC
Q 005240 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVS----SCKLRVWIADAETGEAKPLFESP 81 (706)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~----~~~~~l~~~d~~~g~~~~lt~~~ 81 (706)
.||-.+++. ...++|+. ...--++|||++|+|+...++..... .....||.+++++++.++|+...
T Consensus 38 ~ly~~~~dg----~~~~~l~~------~~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~~~ 107 (302)
T 3s25_A 38 RLYAMNIDG----SNIHKLSN------DTAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPDP 107 (302)
T ss_dssp EEEEEETTS----CSCEEEEE------EEEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEECSC
T ss_pred eEEEEcCCC----CCCEEccC------CceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeecCC
Confidence 466666644 67777762 22346799999999998643211000 02578999999999988887443
Q ss_pred CccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEE
Q 005240 82 DICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (706)
Q Consensus 82 ~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~ 161 (706)
. ..|+++|++|+|..... . ....||+
T Consensus 108 ~---------~~~s~~g~~Iy~~~~~~-~--------------------------------------------~~~~Iy~ 133 (302)
T 3s25_A 108 C---------IYASLIGNYIYYLHYDT-Q--------------------------------------------TATSLYR 133 (302)
T ss_dssp E---------EEEEEETTEEEEEEESS-S--------------------------------------------SCEEEEE
T ss_pred c---------cEEEEeCCEEEEEeecC-C--------------------------------------------CCceEEE
Confidence 2 27999999999974100 0 2268999
Q ss_pred EccCC-CceecCCCceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCcc
Q 005240 162 GSLDG-TAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240 (706)
Q Consensus 162 ~~l~g-~~~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~ 240 (706)
++++| +.++|+.... ..++|+|++|+|++.. ..+|++.+++|+..++|.....
T Consensus 134 ~~~dGs~~~~lt~~~~---~~~~~~g~~iy~t~~g------------~~~Iy~~~l~g~~~~~l~~~~~----------- 187 (302)
T 3s25_A 134 IRIDGEEKKKIKNHYL---FTCNTSDRYFYYNNPK------------NGQLYRYDTASQSEALFYDCNC----------- 187 (302)
T ss_dssp EETTSCCCEEEESSCC---CCSEEETTEEEEECTT------------TCCEEEEETTTTEEEEEECSCE-----------
T ss_pred EECCCCCeEEEeCCCc---eEeeEECCEEEEEeCC------------CceEEEEECCCCCEEEEeCCCc-----------
Confidence 99988 7788887632 5679999999999763 2489999999998888754321
Q ss_pred CCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeecc
Q 005240 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYK 320 (706)
Q Consensus 241 ~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~ 320 (706)
...++|+++. |||+...++ ..|+++++ +|+..+.|+.... +.|+|++.+|+|.....
T Consensus 188 -----~~~~~P~g~~-iy~t~~~~~----------~~I~~~~l---dG~~~~~Lt~~~~----~~~~~~g~~Iy~~~~~~ 244 (302)
T 3s25_A 188 -----YKPVVLDDTN-VYYMDVNRD----------NAIVHVNI---NNPNPVVLTEANI----EHYNVYGSLIFYQRGGD 244 (302)
T ss_dssp -----EEEEEEETTE-EEEEEGGGT----------TEEEEECS---SSCCCEECSCSCE----EEEEEETTEEEEEECSS
T ss_pred -----cceeeecCCE-EEEEEcCCC----------cEEEEEEC---CCCCeEEEeCCCc----ceEEECCCEEEEEECCC
Confidence 1235699998 888743211 25899998 7888888875432 56999999999875332
Q ss_pred ccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEee
Q 005240 321 TSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 321 ~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 371 (706)
...|+++++++. ..+.|.+..+ ...++.+.+|+|+.
T Consensus 245 --~~~i~~~~~DG~--~r~~l~~~~~-----------~~i~i~~d~Iy~td 280 (302)
T 3s25_A 245 --NPALCVVKNDGT--GFKELAKGEF-----------CNINVTSQYVYFTD 280 (302)
T ss_dssp --SCEEEEEETTSC--CCEEEEESCE-----------EEEEECSSEEEEEE
T ss_pred --CcEEEEEECCCC--ccEEeeCCcc-----------ceEEEeCCEEEEEE
Confidence 368999999994 3455543321 23467888888875
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.2e-13 Score=144.44 Aligned_cols=309 Identities=9% Similarity=0.013 Sum_probs=181.3
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~ 111 (706)
.+..++|||||++|+.... ...|.++++.+++.......... .+..+.|+|||++|+..+.
T Consensus 34 ~v~~~~~s~~~~~l~~~~~----------dg~i~vwd~~~~~~~~~~~~h~~----~v~~~~~~~~~~~l~s~~~----- 94 (369)
T 3zwl_B 34 PLTQVKYNKEGDLLFSCSK----------DSSASVWYSLNGERLGTLDGHTG----TIWSIDVDCFTKYCVTGSA----- 94 (369)
T ss_dssp CEEEEEECTTSCEEEEEES----------SSCEEEEETTTCCEEEEECCCSS----CEEEEEECTTSSEEEEEET-----
T ss_pred eEEEEEEcCCCCEEEEEeC----------CCEEEEEeCCCchhhhhhhhcCC----cEEEEEEcCCCCEEEEEeC-----
Confidence 5889999999999988642 24678888888776554322211 2778999999999887642
Q ss_pred CCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCCc-eecCCCceEeeeeeCCCCcEE
Q 005240 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTA-KDFGTPAVYTAVEPSPDQKYV 189 (706)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~-~~lt~~~~~~~~~~SpDG~~i 189 (706)
.+.|.++++ +++. ..+.....+..+.|+|+|+.|
T Consensus 95 --------------------------------------------dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l 130 (369)
T 3zwl_B 95 --------------------------------------------DYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYF 130 (369)
T ss_dssp --------------------------------------------TTEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEE
T ss_pred --------------------------------------------CCeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEE
Confidence 157888888 5543 333333678899999999999
Q ss_pred EEEeeccCcccccccccccceEEEEecCCCee-EEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCC
Q 005240 190 LITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDA 268 (706)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~ 268 (706)
+........ ....|.+|++..... ..+......................+.|+|+++. |+... .
T Consensus 131 ~~~~~~~~~--------~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~-~----- 195 (369)
T 3zwl_B 131 LAILDNVMK--------NPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKY-IIAGH-K----- 195 (369)
T ss_dssp EEEECCBTT--------BCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCE-EEEEE-T-----
T ss_pred EEecCCccC--------CCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCE-EEEEc-C-----
Confidence 877654110 024788888873321 1111000000000000000012447899999986 54331 1
Q ss_pred ccccCccceeeeecCCCCCC-CCc-eEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCcc
Q 005240 269 NVEVSPRDIIYTQPAEPAEG-EKP-EILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVF 346 (706)
Q Consensus 269 ~~~~~~~~~l~~~d~~~~~~-~~~-~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~ 346 (706)
.+.|+++|+ .. ++. ..+......+..+.|+||+..|+..+. ...|.++|+.++ +....+...
T Consensus 196 ------dg~i~i~d~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~i~v~d~~~~--~~~~~~~~~- 259 (369)
T 3zwl_B 196 ------DGKISKYDV---SNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSR----DTNSFLVDVSTL--QVLKKYETD- 259 (369)
T ss_dssp ------TSEEEEEET---TTTTEEEEEEECCSSCEEEEEECTTSSEEEEEET----TSEEEEEETTTC--CEEEEEECS-
T ss_pred ------CCEEEEEEC---CCCcEeEEEEecCCCceeEEEECCCCCEEEEecC----CceEEEEECCCC--ceeeeecCC-
Confidence 125888888 33 232 334455778889999999998887652 235788888874 233332211
Q ss_pred cccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeeecccchhhhhhhhhhc
Q 005240 347 ENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALV 426 (706)
Q Consensus 347 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~ 426 (706)
.....+.|+|+|++++..... ++..++..... .....+..+|..+++.........
T Consensus 260 ------~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~----~~~~~i~~~d~~~~~~~~~~~~~~----------- 315 (369)
T 3zwl_B 260 ------CPLNTAVITPLKEFIILGGGQ---EAKDVTTTSAN----EGKFEARFYHKIFEEEIGRVQGHF----------- 315 (369)
T ss_dssp ------SCEEEEEECSSSSEEEEEECC---C-----------------CEEEEEETTTCCEEEEEECCS-----------
T ss_pred ------CCceeEEecCCCceEEEeecC---CCceEEEEecC----CCcceeEEEecCCCcchhheeccc-----------
Confidence 112246789999999887632 12222221111 122356777887776544433221
Q ss_pred cCCCceecccCCCEEEEEEecCCCCcEEEEEECCCC
Q 005240 427 FGQGEEDINLNQLKILTSKESKTEITQYHILSWPLK 462 (706)
Q Consensus 427 ~~~~~~~~s~Dg~~l~~~~~~~~~p~~v~~~~~~~~ 462 (706)
.......|+||++.|+....+ ..|.+|++.++
T Consensus 316 ~~v~~~~~s~~~~~l~s~~~d----g~v~iw~~~~~ 347 (369)
T 3zwl_B 316 GPLNTVAISPQGTSYASGGED----GFIRLHHFEKS 347 (369)
T ss_dssp SCEEEEEECTTSSEEEEEETT----SEEEEEEECHH
T ss_pred CcEEEEEECCCCCEEEEEcCC----CeEEEEECccc
Confidence 122357899999877765433 35889987654
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=1e-13 Score=143.55 Aligned_cols=286 Identities=13% Similarity=0.078 Sum_probs=161.4
Q ss_pred cceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCcc
Q 005240 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~ 84 (706)
..|++.+++. .|+.+.+..++....+..++|||||++|+++... ++...+|.++.++++.+.+......
T Consensus 15 ~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~~- 83 (343)
T 1ri6_A 15 QQIHVWNLNH---EGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRP-------EFRVLAYRIAPDDGALTFAAESALP- 83 (343)
T ss_dssp TEEEEEEECT---TSCEEEEEEEECSSCCCCEEECTTSSEEEEEETT-------TTEEEEEEECTTTCCEEEEEEEECS-
T ss_pred CeEEEEEECC---CCcEEEeeeEecCCCCceEEECCCCCEEEEeecC-------CCeEEEEEecCCCCceeeccccccC-
Confidence 4688888864 2554555444455568889999999999876531 2334444444447776655332211
Q ss_pred ccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc
Q 005240 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (706)
Q Consensus 85 ~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l 164 (706)
..+..++|+|||++|++.... .+.|+++++
T Consensus 84 --~~~~~~~~s~dg~~l~~~~~~------------------------------------------------~~~i~~~d~ 113 (343)
T 1ri6_A 84 --GSLTHISTDHQGQFVFVGSYN------------------------------------------------AGNVSVTRL 113 (343)
T ss_dssp --SCCSEEEECTTSSEEEEEETT------------------------------------------------TTEEEEEEE
T ss_pred --CCCcEEEEcCCCCEEEEEecC------------------------------------------------CCeEEEEEC
Confidence 126788999999988876421 145666666
Q ss_pred -CCC---cee-cCCCceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCC-CeeEEcc--cCCCCCCCCcc
Q 005240 165 -DGT---AKD-FGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG-KLVRELC--DLPPAEDIPVC 236 (706)
Q Consensus 165 -~g~---~~~-lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~l~--~~~~~~~~p~~ 236 (706)
+|. ... +.....+..++|+|||++|++..... ..|.+|++.. ++...+. .......
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~------------~~v~~~d~~~~~~~~~~~~~~~~~~~~---- 177 (343)
T 1ri6_A 114 EDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQ------------DRICLFTVSDDGHLVAQDPAEVTTVEG---- 177 (343)
T ss_dssp ETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGG------------TEEEEEEECTTSCEEEEEEEEEECSTT----
T ss_pred CCCccccccccccCCCCceEEEECCCCCEEEEecCCC------------CEEEEEEecCCCceeeecccccccCCC----
Confidence 441 222 22224567899999999997765332 4799999986 5544322 1111000
Q ss_pred cCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeec---c------cccccceec
Q 005240 237 YNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL---D------LRFRSVSWC 307 (706)
Q Consensus 237 ~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~---~------~~~~~~~ws 307 (706)
.++..+.|+|||+. |++.... .+.+.+++++. .+++.+.+... . .....+.|+
T Consensus 178 -----~~~~~~~~~pdg~~-l~~~~~~-----------~~~i~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s 239 (343)
T 1ri6_A 178 -----AGPRHMVFHPNEQY-AYCVNEL-----------NSSVDVWELKD-PHGNIECVQTLDMMPENFSDTRWAADIHIT 239 (343)
T ss_dssp -----CCEEEEEECTTSSE-EEEEETT-----------TTEEEEEESSC-TTSCCEEEEEEECSCTTCCSCCCEEEEEEC
T ss_pred -----CCcceEEECCCCCE-EEEEeCC-----------CCEEEEEEecC-CCCcEEEEeeccccCccccccCCccceEEC
Confidence 12446899999986 6544211 12466777621 23444332211 1 122358999
Q ss_pred CCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCC
Q 005240 308 DDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRG 387 (706)
Q Consensus 308 pDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g 387 (706)
|||+.|++.. ..++...+|.++.+++ +...+...... .....+.|+|||++|++....
T Consensus 240 ~dg~~l~v~~-~~~~~i~v~d~~~~~~--~~~~~~~~~~~-----~~~~~~~~s~dg~~l~~~~~~-------------- 297 (343)
T 1ri6_A 240 PDGRHLYACD-RTASLITVFSVSEDGS--VLSKEGFQPTE-----TQPRGFNVDHSGKYLIAAGQK-------------- 297 (343)
T ss_dssp TTSSEEEEEE-TTTTEEEEEEECTTSC--CEEEEEEEECS-----SSCCCEEECTTSSEEEEECTT--------------
T ss_pred CCCCEEEEEe-cCCCEEEEEEEcCCCC--ceEEeeeecCC-----CccceEEECCCCCEEEEecCC--------------
Confidence 9999887654 2223334444443342 22332111100 012247889999988876521
Q ss_pred CCCCCCCCceeeeecCCCceeeee
Q 005240 388 FTPEGNIPFLDLFDINTGSKERIW 411 (706)
Q Consensus 388 ~~~~~~~~~l~~~d~~~g~~~~l~ 411 (706)
.....+|.+|.++|+.+.+.
T Consensus 298 ----~~~v~v~~~d~~~g~~~~~~ 317 (343)
T 1ri6_A 298 ----SHHISVYEIVGEQGLLHEKG 317 (343)
T ss_dssp ----TCEEEEEEEETTTTEEEEEE
T ss_pred ----CCeEEEEEEcCCCceeeEcc
Confidence 12234666788788765553
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=99.63 E-value=7.4e-14 Score=157.35 Aligned_cols=231 Identities=12% Similarity=0.051 Sum_probs=139.9
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceee-cccCCCccccccccceEEecCCcEEEEEecCCCC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKP-LFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~-lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~ 110 (706)
....+.|||||++||+.. . ..+.++++++++... +..+.. .+..++|||||++|+..+.+
T Consensus 20 ~~~~~~~spdg~~l~~~~---------~--~~v~l~~~~~~~~~~~~~~h~~-----~v~~~~~spdg~~lasg~~d--- 80 (611)
T 1nr0_A 20 TAVVLGNTPAGDKIQYCN---------G--TSVYTVPVGSLTDTEIYTEHSH-----QTTVAKTSPSGYYCASGDVH--- 80 (611)
T ss_dssp CCCCCEECTTSSEEEEEE---------T--TEEEEEETTCSSCCEEECCCSS-----CEEEEEECTTSSEEEEEETT---
T ss_pred ceeEEeeCCCCCEEEeCC---------C--CEEEEecCCCcccCeEecCCCC-----ceEEEEECCCCcEEEEEeCC---
Confidence 466788999999999964 2 478888987655443 433332 27789999999999876421
Q ss_pred CCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCCc---eecCCC-ceEeeeeeCCC
Q 005240 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTA---KDFGTP-AVYTAVEPSPD 185 (706)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~---~~lt~~-~~~~~~~~SpD 185 (706)
+.|.++|+ +++. ..+... ..+..++||||
T Consensus 81 ----------------------------------------------~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~d 114 (611)
T 1nr0_A 81 ----------------------------------------------GNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSE 114 (611)
T ss_dssp ----------------------------------------------SEEEEEESSSTTCCEEEEEECSSSCEEEEEECTT
T ss_pred ----------------------------------------------CCEEEeECCCCcceeeEeecccCCceEEEEECCC
Confidence 46777787 4422 123223 67889999999
Q ss_pred CcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccC
Q 005240 186 QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDR 265 (706)
Q Consensus 186 G~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~ 265 (706)
|++|+........ ...+++|+.. .....+..+. ..+..+.|+|+++..|+-. ..+
T Consensus 115 g~~l~~~~~~~~~---------~~~v~~wd~~-~~~~~l~gh~-------------~~v~~v~f~p~~~~~l~s~-s~D- 169 (611)
T 1nr0_A 115 SKRIAAVGEGRER---------FGHVFLFDTG-TSNGNLTGQA-------------RAMNSVDFKPSRPFRIISG-SDD- 169 (611)
T ss_dssp SCEEEEEECCSSC---------SEEEEETTTC-CBCBCCCCCS-------------SCEEEEEECSSSSCEEEEE-ETT-
T ss_pred CCEEEEEECCCCc---------eeEEEEeeCC-CCcceecCCC-------------CCceEEEECCCCCeEEEEE-eCC-
Confidence 9999876643211 1367788743 2222222211 2245789999997524322 111
Q ss_pred CCCccccCccceeeeecCCCCCCCCc-eEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeee-c
Q 005240 266 GDANVEVSPRDIIYTQPAEPAEGEKP-EILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLF-D 343 (706)
Q Consensus 266 ~~~~~~~~~~~~l~~~d~~~~~~~~~-~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~-~ 343 (706)
..+.+||. ..++. ..+..+...+..++|+|||+.|+..+.+ +. |.++|+.++ +....+ .
T Consensus 170 ----------~~v~lwd~---~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D--~~--i~lwd~~~g--~~~~~~~~ 230 (611)
T 1nr0_A 170 ----------NTVAIFEG---PPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGD--GT--IVLYNGVDG--TKTGVFED 230 (611)
T ss_dssp ----------SCEEEEET---TTBEEEEEECCCSSCEEEEEECTTSSEEEEEETT--SC--EEEEETTTC--CEEEECBC
T ss_pred ----------CeEEEEEC---CCCeEeeeeccccCceEEEEECCCCCEEEEEECC--Cc--EEEEECCCC--cEeeeecc
Confidence 24777777 33332 3345567788899999999988876532 33 555666553 222222 1
Q ss_pred CcccccccCCCCCceEeccCCCEEEEee
Q 005240 344 RVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 344 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 371 (706)
.......+......+.|+|||++|+...
T Consensus 231 ~~~~~~~h~~~V~~v~~spdg~~l~s~s 258 (611)
T 1nr0_A 231 DSLKNVAHSGSVFGLTWSPDGTKIASAS 258 (611)
T ss_dssp TTSSSCSSSSCEEEEEECTTSSEEEEEE
T ss_pred ccccccccCCCEEEEEECCCCCEEEEEe
Confidence 1111001111233578999999887665
|
| >3bjr_A Putative carboxylesterase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.09A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.2e-15 Score=154.28 Aligned_cols=198 Identities=16% Similarity=0.102 Sum_probs=137.4
Q ss_pred CCCceEEEEEEccCCeEEEEEEEecCCCC-CCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCe
Q 005240 478 ASLQKEMIKYQRKDGVPLTATLYLPPGYD-QSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRF 556 (706)
Q Consensus 478 ~~~~~~~~~~~~~dg~~i~~~l~~P~~~~-~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~ 556 (706)
...+.+.+.+...+|..+...+| |+... ....++.|+||++|||++.. +.... ....+..|+++||
T Consensus 15 ~~~~~~~v~~~~~~g~~~~~~~y-p~~~~~~~~~~~~p~vv~lHGgg~~~--------~~~~~----~~~~~~~l~~~G~ 81 (283)
T 3bjr_A 15 LYFQGMQVIKQKLTATCAQLTGY-LHQPDTNAHQTNLPAIIIVPGGSYTH--------IPVAQ----AESLAMAFAGHGY 81 (283)
T ss_dssp --CCSSEEEEEECTTSSCEEEEE-EC--------CCEEEEEEECCSTTTC--------CCHHH----HHHHHHHHHTTTC
T ss_pred cCCCCcceEEeecCCCceeEEEe-cCCccccccCCCCcEEEEECCCcccc--------CCccc----cHHHHHHHHhCCc
Confidence 34566778898889988888899 76521 00123589999999986421 01000 1234567888999
Q ss_pred EEEEcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcC---CCCCCcEEEEEechHHHHHHHHHHhCCCc-------
Q 005240 557 AVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRG---VADPSRIAVGGHSYGAFMTAHLLAHAPHL------- 626 (706)
Q Consensus 557 ~v~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~---~id~~~i~i~G~S~GG~~a~~~~~~~p~~------- 626 (706)
.|+.+++++. +.... .......|+.++++|+.+.. .+|+++|+|+|+|+||++++.++.+.|++
T Consensus 82 ~v~~~d~~g~---~~~~~---~~~~~~~d~~~~~~~l~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~~ 155 (283)
T 3bjr_A 82 QAFYLEYTLL---TDQQP---LGLAPVLDLGRAVNLLRQHAAEWHIDPQQITPAGFSVGGHIVALYNDYWATRVATELNV 155 (283)
T ss_dssp EEEEEECCCT---TTCSS---CBTHHHHHHHHHHHHHHHSHHHHTEEEEEEEEEEETHHHHHHHHHHHHTTTHHHHHHTC
T ss_pred EEEEEeccCC---Ccccc---CchhHHHHHHHHHHHHHHHHHHhCCCcccEEEEEECHHHHHHHHHHhhccccchhhcCC
Confidence 9999877653 32200 11234678888999998753 37888999999999999999999999987
Q ss_pred ------eeEEEeccCCCCCCC-----------------------------CCcc------------chHHHHHHHHHhCC
Q 005240 627 ------FCCGIARSGSYNKTL-----------------------------TPFG------------FQAERFFDALKGHG 659 (706)
Q Consensus 627 ------~~a~v~~~~~~d~~~-----------------------------~~~~------------~~~~~~~~~l~~~~ 659 (706)
++++++.+|..+... .|.. -+..+++++|...+
T Consensus 156 ~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~lii~G~~D~~~p~~~~~~~~~~l~~~g 235 (283)
T 3bjr_A 156 TPAMLKPNNVVLGYPVISPLLGFPKDDATLATWTPTPNELAADQHVNSDNQPTFIWTTADDPIVPATNTLAYATALATAK 235 (283)
T ss_dssp CHHHHCCSSEEEESCCCCTTSBC--------CCCCCGGGGCGGGSCCTTCCCEEEEEESCCTTSCTHHHHHHHHHHHHTT
T ss_pred CcCCCCccEEEEcCCccccccccccccchHHHHHHHhHhcCHHHhccCCCCCEEEEEcCCCCCCChHHHHHHHHHHHHCC
Confidence 899999998874210 0100 02348999999999
Q ss_pred CcEEEEEeCCCCccCCCcc------------cHHHHHHHHHHHHHHH
Q 005240 660 ALSRLVLLPFEHHVYAARE------------NVMHVIWETDRWLQKY 694 (706)
Q Consensus 660 ~~~~~~~~~~~~H~~~~~~------------~~~~~~~~~~~f~~~~ 694 (706)
.++++++||+++|.+.... ...++.+.+.+||+++
T Consensus 236 ~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fl~~~ 282 (283)
T 3bjr_A 236 IPYELHVFKHGPHGLALANAQTAWKPDANQPHVAHWLTLALEWLADN 282 (283)
T ss_dssp CCEEEEEECCCSHHHHHHHHHHSCC-------CCHHHHHHHHHHHHT
T ss_pred CCeEEEEeCCCCcccccccccccccccccchhHHHHHHHHHHHHhhc
Confidence 9999999999999775321 1257788899999864
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.62 E-value=2.7e-13 Score=139.94 Aligned_cols=291 Identities=11% Similarity=-0.025 Sum_probs=170.2
Q ss_pred ccceeEeecCCCCCCCCeeeeecCCCCC-cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCC
Q 005240 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGA-KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD 82 (706)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~i~~~~~~~-~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~ 82 (706)
...|++.|+.. ++......++... ....++|||||++|+++. .....|+++|+.+++.........
T Consensus 10 ~~~v~~~d~~~----~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~---------~~~~~v~~~d~~~~~~~~~~~~~~ 76 (337)
T 1pby_B 10 PDKLVVIDTEK----MAVDKVITIADAGPTPMVPMVAPGGRIAYATV---------NKSESLVKIDLVTGETLGRIDLST 76 (337)
T ss_dssp TTEEEEEETTT----TEEEEEEECTTCTTCCCCEEECTTSSEEEEEE---------TTTTEEEEEETTTCCEEEEEECCB
T ss_pred CCeEEEEECCC----CcEEEEEEcCCCCCCccceEEcCCCCEEEEEe---------CCCCeEEEEECCCCCeEeeEEcCC
Confidence 35688888866 6555433233311 377899999999997765 334689999999887654322211
Q ss_pred cc-ccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEE
Q 005240 83 IC-LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (706)
Q Consensus 83 ~~-~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~ 161 (706)
.. ....+..+.|+|||++|++......... . .+ ......|++
T Consensus 77 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~------------------~-----~~--------------~~~~~~i~v 119 (337)
T 1pby_B 77 PEERVKSLFGAALSPDGKTLAIYESPVRLEL------------------T-----HF--------------EVQPTRVAL 119 (337)
T ss_dssp TTEEEECTTCEEECTTSSEEEEEEEEEEECS------------------S-----CE--------------EECCCEEEE
T ss_pred cccccccccceEECCCCCEEEEEeccccccc------------------c-----cc--------------cccCceEEE
Confidence 00 0012568899999998887642100000 0 00 001268999
Q ss_pred Ecc-CCCc-eecCCCceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCc
Q 005240 162 GSL-DGTA-KDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNS 239 (706)
Q Consensus 162 ~~l-~g~~-~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~ 239 (706)
+++ +++. ..+..+.....++|||||++|++.. ..|++|++.+++..........
T Consensus 120 ~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~---------------~~i~~~d~~~~~~~~~~~~~~~--------- 175 (337)
T 1pby_B 120 YDAETLSRRKAFEAPRQITMLAWARDGSKLYGLG---------------RDLHVMDPEAGTLVEDKPIQSW--------- 175 (337)
T ss_dssp EETTTTEEEEEEECCSSCCCEEECTTSSCEEEES---------------SSEEEEETTTTEEEEEECSTTT---------
T ss_pred EECCCCcEEEEEeCCCCcceeEECCCCCEEEEeC---------------CeEEEEECCCCcEeeeeecccc---------
Confidence 999 4443 3333334566788999999998771 2699999997765543322110
Q ss_pred cCCCCcceeeecCCCceEEEEEeccCCC-------------CccccCccceeeeecCCCCCCCCceEEe--ecccccccc
Q 005240 240 VREGMRSISWRADKPSTLYWVEAQDRGD-------------ANVEVSPRDIIYTQPAEPAEGEKPEILH--KLDLRFRSV 304 (706)
Q Consensus 240 ~~~g~~~~~~spdg~~~l~~~~~~~~~~-------------~~~~~~~~~~l~~~d~~~~~~~~~~~l~--~~~~~~~~~ 304 (706)
...+.|+|||+. |++.. ..... ..........|+++|+ .+++...+. ........+
T Consensus 176 ----~~~~~~s~dg~~-l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~---~~~~~~~~~~~~~~~~~~~~ 246 (337)
T 1pby_B 176 ----EAETYAQPDVLA-VWNQH-ESSGVMATPFYTARKDIDPADPTAYRTGLLTMDL---ETGEMAMREVRIMDVFYFST 246 (337)
T ss_dssp ----TTTTBCCCBCCC-CCCCC-TTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEET---TTCCEEEEEEEECSSCEEEE
T ss_pred ----CCCceeCCCccE-Eeeec-cCCCceeeeeeccccccccccccccccceEEEeC---CCCCceEeecCCCCCceeeE
Confidence 113478899886 54321 11100 0000011115788888 666665433 223345568
Q ss_pred eecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEe
Q 005240 305 SWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLN 384 (706)
Q Consensus 305 ~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~ 384 (706)
.|+|||+.|++. ...|+++|++++ +........ .....+.|+|||++|++...
T Consensus 247 ~~s~dg~~l~~~------~~~v~~~d~~~~--~~~~~~~~~-------~~~~~~~~s~dg~~l~~~~~------------ 299 (337)
T 1pby_B 247 AVNPAKTRAFGA------YNVLESFDLEKN--ASIKRVPLP-------HSYYSVNVSTDGSTVWLGGA------------ 299 (337)
T ss_dssp EECTTSSEEEEE------ESEEEEEETTTT--EEEEEEECS-------SCCCEEEECTTSCEEEEESB------------
T ss_pred EECCCCCEEEEe------CCeEEEEECCCC--cCcceecCC-------CceeeEEECCCCCEEEEEcC------------
Confidence 999999988875 146899998874 232222211 01224778999998877521
Q ss_pred cCCCCCCCCCCceeeeecCCCceeeeecc
Q 005240 385 GRGFTPEGNIPFLDLFDINTGSKERIWES 413 (706)
Q Consensus 385 ~~g~~~~~~~~~l~~~d~~~g~~~~l~~~ 413 (706)
...|..+|+++++....+..
T Consensus 300 ---------~~~i~v~d~~~~~~~~~~~~ 319 (337)
T 1pby_B 300 ---------LGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp ---------SSEEEEEETTTCCEEEEEEC
T ss_pred ---------CCcEEEEECcCCcEEEEEEc
Confidence 11467788888876554433
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.62 E-value=3.5e-13 Score=139.11 Aligned_cols=279 Identities=11% Similarity=0.044 Sum_probs=168.3
Q ss_pred CceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccch
Q 005240 60 CKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTD 139 (706)
Q Consensus 60 ~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (706)
....|+++|+++++..+....+.. ...+..++|||||+.|++...
T Consensus 9 ~~~~v~~~d~~~~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~v~~~--------------------------------- 53 (337)
T 1pby_B 9 RPDKLVVIDTEKMAVDKVITIADA--GPTPMVPMVAPGGRIAYATVN--------------------------------- 53 (337)
T ss_dssp TTTEEEEEETTTTEEEEEEECTTC--TTCCCCEEECTTSSEEEEEET---------------------------------
T ss_pred CCCeEEEEECCCCcEEEEEEcCCC--CCCccceEEcCCCCEEEEEeC---------------------------------
Confidence 346899999998876654432220 001568899999998877642
Q ss_pred hccCCchhhhhhhhcccceEEEEcc-CCCce-ecCCCc------eEeeeeeCCCCcEEEEEeeccCccccccccc--ccc
Q 005240 140 NLLKDEYDESLFDYYTTAQLVLGSL-DGTAK-DFGTPA------VYTAVEPSPDQKYVLITSMHRPYSYKVPCAR--FSQ 209 (706)
Q Consensus 140 ~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~~-~lt~~~------~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~--~~~ 209 (706)
....|+++|+ +++.. .+.... .+..++|||||++|++........ +... ...
T Consensus 54 ---------------~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~---~~~~~~~~~ 115 (337)
T 1pby_B 54 ---------------KSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLE---LTHFEVQPT 115 (337)
T ss_dssp ---------------TTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEEC---SSCEEECCC
T ss_pred ---------------CCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccc---cccccccCc
Confidence 1157888998 55443 343222 456789999999998875321000 0000 135
Q ss_pred eEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCC
Q 005240 210 KVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGE 289 (706)
Q Consensus 210 ~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~ 289 (706)
.|++|++.+++........ ..+..+.|+|||+. |++. + ..|+++|+ +++
T Consensus 116 ~i~v~d~~~~~~~~~~~~~-------------~~~~~~~~s~dg~~-l~~~---~-----------~~i~~~d~---~~~ 164 (337)
T 1pby_B 116 RVALYDAETLSRRKAFEAP-------------RQITMLAWARDGSK-LYGL---G-----------RDLHVMDP---EAG 164 (337)
T ss_dssp EEEEEETTTTEEEEEEECC-------------SSCCCEEECTTSSC-EEEE---S-----------SSEEEEET---TTT
T ss_pred eEEEEECCCCcEEEEEeCC-------------CCcceeEECCCCCE-EEEe---C-----------CeEEEEEC---CCC
Confidence 8999999876654433221 12346789999997 6654 1 13888888 555
Q ss_pred CceEEeecccccccceecCCCceEEEEeecccc--------------------ceEEEEEcCCCCCCCceeeecCccccc
Q 005240 290 KPEILHKLDLRFRSVSWCDDSLALVNETWYKTS--------------------QTRTWLVCPGSKDVAPRVLFDRVFENV 349 (706)
Q Consensus 290 ~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~--------------------~~~l~~~d~~~~~~~~~~l~~~~~~~~ 349 (706)
+.............+.|+|||+.|++....... ...|+++|+.+++ ...+.-....
T Consensus 165 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~--~~~~~~~~~~-- 240 (337)
T 1pby_B 165 TLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGE--MAMREVRIMD-- 240 (337)
T ss_dssp EEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCC--EEEEEEEECS--
T ss_pred cEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCC--ceEeecCCCC--
Confidence 554433333323466899999987654321110 1158899988853 3222110000
Q ss_pred ccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeeecccchhhhhhhhhhccCC
Q 005240 350 YSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQ 429 (706)
Q Consensus 350 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~ 429 (706)
.....+.|+|||+++++.. . .|+.+|+++++......... ..
T Consensus 241 ---~~~~~~~~s~dg~~l~~~~-~----------------------~v~~~d~~~~~~~~~~~~~~------------~~ 282 (337)
T 1pby_B 241 ---VFYFSTAVNPAKTRAFGAY-N----------------------VLESFDLEKNASIKRVPLPH------------SY 282 (337)
T ss_dssp ---SCEEEEEECTTSSEEEEEE-S----------------------EEEEEETTTTEEEEEEECSS------------CC
T ss_pred ---CceeeEEECCCCCEEEEeC-C----------------------eEEEEECCCCcCcceecCCC------------ce
Confidence 0112367899999987762 1 47778888887655443321 12
Q ss_pred CceecccCCCEEEEEEecCCCCcEEEEEECCCCceeEee
Q 005240 430 GEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQIT 468 (706)
Q Consensus 430 ~~~~~s~Dg~~l~~~~~~~~~p~~v~~~~~~~~~~~~lt 468 (706)
..+.|+|||++|+... ....|++||+++++.....
T Consensus 283 ~~~~~s~dg~~l~~~~----~~~~i~v~d~~~~~~~~~~ 317 (337)
T 1pby_B 283 YSVNVSTDGSTVWLGG----ALGDLAAYDAETLEKKGQV 317 (337)
T ss_dssp CEEEECTTSCEEEEES----BSSEEEEEETTTCCEEEEE
T ss_pred eeEEECCCCCEEEEEc----CCCcEEEEECcCCcEEEEE
Confidence 3578999998777642 2467999999888755443
|
| >2hdw_A Hypothetical protein PA2218; alpha/beta hydrolase fold, structural genomics, PSI, structure initiative; 2.00A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.9e-14 Score=151.15 Aligned_cols=138 Identities=19% Similarity=0.152 Sum_probs=105.8
Q ss_pred CCCceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeE
Q 005240 478 ASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFA 557 (706)
Q Consensus 478 ~~~~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~ 557 (706)
..+..+.+++.+.||..+.++++.|++ .+. ++.|+||++||++.. . ..+ ...++..|+++||.
T Consensus 64 ~~~~~~~~~~~~~~g~~~~~~~~~p~~-~~~--~~~p~vv~~hG~~~~--------~---~~~---~~~~~~~l~~~G~~ 126 (367)
T 2hdw_A 64 AKVEHRKVTFANRYGITLAADLYLPKN-RGG--DRLPAIVIGGPFGAV--------K---EQS---SGLYAQTMAERGFV 126 (367)
T ss_dssp TTEEEEEEEEECTTSCEEEEEEEEESS-CCS--SCEEEEEEECCTTCC--------T---TSH---HHHHHHHHHHTTCE
T ss_pred CCceeEEEEEecCCCCEEEEEEEeCCC-CCC--CCCCEEEEECCCCCc--------c---hhh---HHHHHHHHHHCCCE
Confidence 446789999999999999999999986 222 358999999997421 0 011 11256778899999
Q ss_pred EEEcCCCCcCCCCCCCC---chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEecc
Q 005240 558 VLAGPSIPIIGEGDKLP---NDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARS 634 (706)
Q Consensus 558 v~~~~~~~~~g~g~~~~---~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~ 634 (706)
|+.++.+| +|.+.. ..........|+.++++++.++..+|++||+++|+|+||++++.++.++| .++++|+.+
T Consensus 127 v~~~d~~g---~g~s~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p-~~~~~v~~~ 202 (367)
T 2hdw_A 127 TLAFDPSY---TGESGGQPRNVASPDINTEDFSAAVDFISLLPEVNRERIGVIGICGWGGMALNAVAVDK-RVKAVVTST 202 (367)
T ss_dssp EEEECCTT---STTSCCSSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEEEETHHHHHHHHHHHHCT-TCCEEEEES
T ss_pred EEEECCCC---cCCCCCcCccccchhhHHHHHHHHHHHHHhCcCCCcCcEEEEEECHHHHHHHHHHhcCC-CccEEEEec
Confidence 99977764 333322 11225667899999999999988888899999999999999999999997 689999887
Q ss_pred CC
Q 005240 635 GS 636 (706)
Q Consensus 635 ~~ 636 (706)
|.
T Consensus 203 p~ 204 (367)
T 2hdw_A 203 MY 204 (367)
T ss_dssp CC
T ss_pred cc
Confidence 53
|
| >2b9v_A Alpha-amino acid ester hydrolase; catalytic triad, alpha/beta-hydrolase; 2.00A {Acetobacter pasteurianus} SCOP: b.18.1.13 c.69.1.21 PDB: 2b4k_A 1nx9_A* 1ryy_A | Back alignment and structure |
|---|
Probab=99.61 E-value=1.4e-14 Score=162.53 Aligned_cols=150 Identities=15% Similarity=0.146 Sum_probs=108.2
Q ss_pred CceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHH-HHHHHCCeEE
Q 005240 480 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSS-LIFLARRFAV 558 (706)
Q Consensus 480 ~~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~G~~v 558 (706)
+..+.+.++..||..|.+++++|++. +++|+||++||-.... ..........+.. ....+ +.|+++||+|
T Consensus 35 ~~~~~v~i~~~DG~~L~~~l~~P~~~-----~~~PvIl~~hpyg~~~---~~~~~~~~~~~~~-~~~~~~~~la~~GyaV 105 (652)
T 2b9v_A 35 YIKREVMVPMRDGVKLYTVIVIPKNA-----RNAPILLTRTPYNAKG---RANRVPNALTMRE-VLPQGDDVFVEGGYIR 105 (652)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEETTC-----CSEEEEEEEESSCHHH---HTCSSTTCSSHHH-HSCGGGHHHHHTTCEE
T ss_pred cEEEEEEEECCCCcEEEEEEEecCCC-----CCccEEEEECCCCCCc---ccccccccccccc-cccchHHHHHhCCCEE
Confidence 46688999999999999999999862 2589999998521100 0000000000000 00113 7899999999
Q ss_pred EEcCCCCcCCCCCCCCch-----hhH---HHHHHHHHHHHHHHHHc-CCCCCCcEEEEEechHHHHHHHHHHhCCCceeE
Q 005240 559 LAGPSIPIIGEGDKLPND-----RFV---EQLVSSAEAAVEEVVRR-GVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCC 629 (706)
Q Consensus 559 ~~~~~~~~~g~g~~~~~~-----~~~---~~~~~D~~~~~~~l~~~-~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a 629 (706)
+..+.||..+.+..+... .+. ....+|+.++++||.++ +++| .||+++|+||||+++++++.+.|+.|+|
T Consensus 106 v~~D~RG~g~S~g~~~~~~~~~~~~~~~g~~~~~D~~~~i~~l~~~~~~~d-~rvgl~G~SyGG~~al~~a~~~~~~lka 184 (652)
T 2b9v_A 106 VFQDIRGKYGSQGDYVMTRPPHGPLNPTKTDETTDAWDTVDWLVHNVPESN-GRVGMTGSSYEGFTVVMALLDPHPALKV 184 (652)
T ss_dssp EEEECTTSTTCCSCCCTTCCCSBTTBCSSCCHHHHHHHHHHHHHHSCTTEE-EEEEEEEEEHHHHHHHHHHTSCCTTEEE
T ss_pred EEEecCcCCCCCCcccccccccccccccccchhhHHHHHHHHHHhcCCCCC-CCEEEEecCHHHHHHHHHHhcCCCceEE
Confidence 998888776655443322 122 25789999999999998 8887 5999999999999999999988899999
Q ss_pred EEeccCCCCC
Q 005240 630 GIARSGSYNK 639 (706)
Q Consensus 630 ~v~~~~~~d~ 639 (706)
+|+.+++.|+
T Consensus 185 ~v~~~~~~d~ 194 (652)
T 2b9v_A 185 AAPESPMVDG 194 (652)
T ss_dssp EEEEEECCCT
T ss_pred EEeccccccc
Confidence 9999988774
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=4.7e-13 Score=137.73 Aligned_cols=277 Identities=15% Similarity=0.087 Sum_probs=165.5
Q ss_pred cccceeeCCC----CCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecC
Q 005240 32 KINFVSWSPD----GKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPS 107 (706)
Q Consensus 32 ~~~~~~~SPD----G~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~ 107 (706)
.+..++|+|+ ++.|+..+. ++...||-++ +++........+. ...+..+.|+|++..|+..+.
T Consensus 34 ~V~~v~~~~~~~~~~~~l~tgs~--------D~~v~vW~~~--~~~~~~~~~l~gh--~~~v~~~~~~~~~~~l~s~s~- 100 (321)
T 3ow8_A 34 AIWSVAWGTNKKENSETVVTGSL--------DDLVKVWKWR--DERLDLQWSLEGH--QLGVVSVDISHTLPIAASSSL- 100 (321)
T ss_dssp CEEEEEEC-------CEEEEEET--------TSCEEEEEEE--TTEEEEEEEECCC--SSCEEEEEECSSSSEEEEEET-
T ss_pred cEEEEEEecCCCCCCCEEEEEcC--------CCCEEEEECC--CCCeeeeeeeccC--CCCEEEEEECCCCCEEEEEeC-
Confidence 5889999986 456765543 5556666554 4432221111111 113778899999998876542
Q ss_pred CCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CC-CceecCCC-ceEeeeeeCC
Q 005240 108 SRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTP-AVYTAVEPSP 184 (706)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g-~~~~lt~~-~~~~~~~~Sp 184 (706)
.+.|.++|+ ++ ....+... ..+..++|+|
T Consensus 101 ------------------------------------------------D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~sp 132 (321)
T 3ow8_A 101 ------------------------------------------------DAHIRLWDLENGKQIKSIDAGPVDAWTLAFSP 132 (321)
T ss_dssp ------------------------------------------------TSEEEEEETTTTEEEEEEECCTTCCCCEEECT
T ss_pred ------------------------------------------------CCcEEEEECCCCCEEEEEeCCCccEEEEEECC
Confidence 157888888 55 44445444 5667899999
Q ss_pred CCcEEEEEeeccCcccccccccccceEEEEecCCCeeE-EcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEec
Q 005240 185 DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR-ELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQ 263 (706)
Q Consensus 185 DG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~ 263 (706)
||++|+..... ..+.+|++..++.. .+.... ..+..++|+|||+. |+... .
T Consensus 133 dg~~l~~g~~d-------------g~v~i~~~~~~~~~~~~~~~~-------------~~v~~~~~spdg~~-lasg~-~ 184 (321)
T 3ow8_A 133 DSQYLATGTHV-------------GKVNIFGVESGKKEYSLDTRG-------------KFILSIAYSPDGKY-LASGA-I 184 (321)
T ss_dssp TSSEEEEECTT-------------SEEEEEETTTCSEEEEEECSS-------------SCEEEEEECTTSSE-EEEEE-T
T ss_pred CCCEEEEEcCC-------------CcEEEEEcCCCceeEEecCCC-------------ceEEEEEECCCCCE-EEEEc-C
Confidence 99999866543 37899999855433 332211 11347899999986 55332 1
Q ss_pred cCCCCccccCccceeeeecCCCCCCCCc-eEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeee
Q 005240 264 DRGDANVEVSPRDIIYTQPAEPAEGEKP-EILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLF 342 (706)
Q Consensus 264 ~~~~~~~~~~~~~~l~~~d~~~~~~~~~-~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~ 342 (706)
.+.|.++|+ .+++. ..+......+..+.|+||++.|+..+.+ + .|.++|+.++ +....+
T Consensus 185 -----------dg~i~iwd~---~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~d--g--~i~iwd~~~~--~~~~~~ 244 (321)
T 3ow8_A 185 -----------DGIINIFDI---ATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDD--G--YIKIYDVQHA--NLAGTL 244 (321)
T ss_dssp -----------TSCEEEEET---TTTEEEEEECCCSSCCCEEEECTTSCEEEEECTT--S--CEEEEETTTC--CEEEEE
T ss_pred -----------CCeEEEEEC---CCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCC--C--eEEEEECCCc--ceeEEE
Confidence 124788888 45543 3344556778899999999988876522 3 3556676663 222222
Q ss_pred cCcccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeeecccchhhhhhh
Q 005240 343 DRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETA 422 (706)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~ 422 (706)
..... ....+.|+|||++|+....+ ..+..+|+.+++....+....
T Consensus 245 ~~h~~------~v~~~~~sp~~~~l~s~s~D---------------------~~v~iwd~~~~~~~~~~~~h~------- 290 (321)
T 3ow8_A 245 SGHAS------WVLNVAFCPDDTHFVSSSSD---------------------KSVKVWDVGTRTCVHTFFDHQ------- 290 (321)
T ss_dssp CCCSS------CEEEEEECTTSSEEEEEETT---------------------SCEEEEETTTTEEEEEECCCS-------
T ss_pred cCCCC------ceEEEEECCCCCEEEEEeCC---------------------CcEEEEeCCCCEEEEEEcCCC-------
Confidence 21111 12247799999988765421 135567777776443332211
Q ss_pred hhhccCCCceecccCCCEEEEEEecCCCCcEEEEEEC
Q 005240 423 VALVFGQGEEDINLNQLKILTSKESKTEITQYHILSW 459 (706)
Q Consensus 423 ~~~~~~~~~~~~s~Dg~~l~~~~~~~~~p~~v~~~~~ 459 (706)
.....+.|+||++.|+....+.. |.+||.
T Consensus 291 ----~~v~~v~~s~~g~~l~s~~~d~~----i~vwd~ 319 (321)
T 3ow8_A 291 ----DQVWGVKYNGNGSKIVSVGDDQE----IHIYDC 319 (321)
T ss_dssp ----SCEEEEEECTTSSEEEEEETTCC----EEEEEC
T ss_pred ----CcEEEEEECCCCCEEEEEeCCCe----EEEEeC
Confidence 12235789999988876554433 777774
|
| >1mpx_A Alpha-amino acid ester hydrolase; alpha/beta hydrolase, jellyroll, selenomethionine; 1.90A {Xanthomonas citri} SCOP: b.18.1.13 c.69.1.21 | Back alignment and structure |
|---|
Probab=99.60 E-value=1.4e-14 Score=161.91 Aligned_cols=146 Identities=16% Similarity=0.189 Sum_probs=106.9
Q ss_pred CceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHH---HHHHHCCe
Q 005240 480 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSS---LIFLARRF 556 (706)
Q Consensus 480 ~~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~G~ 556 (706)
+..+.+.++..||..|.++++.|++. +++|+||++||-... ..........+...+. +.|+++||
T Consensus 23 ~~~~~v~i~~~DG~~L~~~~~~P~~~-----~~~P~vl~~hgyg~~-------~~~~~~~~~~~~~~~~~~~~~la~~Gy 90 (615)
T 1mpx_A 23 YIKREVMIPMRDGVKLHTVIVLPKGA-----KNAPIVLTRTPYDAS-------GRTERLASPHMKDLLSAGDDVFVEGGY 90 (615)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEETTC-----CSEEEEEEEESSCHH-------HHTCSSCCSSHHHHSCGGGHHHHHTTC
T ss_pred CEEEEEEEECCCCCEEEEEEEeCCCC-----CCeeEEEEEcCCCCc-------cccccccccccccccchhHHHHHhCCe
Confidence 46788999999999999999999862 258999999963210 0000000000000112 78999999
Q ss_pred EEEEcCCCCcCCCCCCCCch-----hhHH---HHHHHHHHHHHHHHHc-CCCCCCcEEEEEechHHHHHHHHHHhCCCce
Q 005240 557 AVLAGPSIPIIGEGDKLPND-----RFVE---QLVSSAEAAVEEVVRR-GVADPSRIAVGGHSYGAFMTAHLLAHAPHLF 627 (706)
Q Consensus 557 ~v~~~~~~~~~g~g~~~~~~-----~~~~---~~~~D~~~~~~~l~~~-~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~ 627 (706)
+|+..+.||..+.+..+... .+.. ...+|+.++++||.++ ++.| .||+++|+||||+++++++.+.|++|
T Consensus 91 ~Vv~~D~RG~g~S~g~~~~~~~~~~~~~~~g~~~~~D~~~~i~~l~~~~~~~~-~rv~l~G~S~GG~~al~~a~~~~~~l 169 (615)
T 1mpx_A 91 IRVFQDVRGKYGSEGDYVMTRPLRGPLNPSEVDHATDAWDTIDWLVKNVSESN-GKVGMIGSSYEGFTVVMALTNPHPAL 169 (615)
T ss_dssp EEEEEECTTSTTCCSCCCTTCCCSBTTBCSSCCHHHHHHHHHHHHHHHCTTEE-EEEEEEEETHHHHHHHHHHTSCCTTE
T ss_pred EEEEECCCCCCCCCCccccccccccccccccccHHHHHHHHHHHHHhcCCCCC-CeEEEEecCHHHHHHHHHhhcCCCce
Confidence 99998888765544333221 1122 5689999999999998 7777 59999999999999999999888999
Q ss_pred eEEEeccCCCC
Q 005240 628 CCGIARSGSYN 638 (706)
Q Consensus 628 ~a~v~~~~~~d 638 (706)
+|+|+.+|+.|
T Consensus 170 ~a~v~~~~~~d 180 (615)
T 1mpx_A 170 KVAVPESPMID 180 (615)
T ss_dssp EEEEEESCCCC
T ss_pred EEEEecCCccc
Confidence 99999999887
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.58 E-value=5.1e-13 Score=139.02 Aligned_cols=300 Identities=11% Similarity=0.007 Sum_probs=161.7
Q ss_pred CCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccc
Q 005240 59 SCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMT 138 (706)
Q Consensus 59 ~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (706)
+....+|.+|.++|+.+++...... ..+..++|||||+ |++.....
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~~~~---~~p~~~a~spdg~-l~~~~~~~------------------------------ 60 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLLAAT---QNPTYLALSAKDC-LYSVDKED------------------------------ 60 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEEEC---SCCCCEEECTTCE-EEEEEEET------------------------------
T ss_pred CCCEEEEEEcCCCCeEEEeeeeecc---CCcceEEEccCCe-EEEEEecC------------------------------
Confidence 3446678888888887665322110 1256789999999 77654210
Q ss_pred hhccCCchhhhhhhhcccceEEEEcc-CCCceecCC---C-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEE
Q 005240 139 DNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGT---P-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQV 213 (706)
Q Consensus 139 ~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~~~lt~---~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~ 213 (706)
....|+++++ +|+.+.+.. . ..+..++|||||++|++..... ..+.+
T Consensus 61 ----------------~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~------------~~v~v 112 (347)
T 3hfq_A 61 ----------------DEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHK------------GTAEV 112 (347)
T ss_dssp ----------------TEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTT------------TEEEE
T ss_pred ----------------CCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCC------------CEEEE
Confidence 1267888888 555555543 1 4567899999999998776432 37888
Q ss_pred EecC-CCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCce
Q 005240 214 WTTD-GKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPE 292 (706)
Q Consensus 214 ~~~~-~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 292 (706)
|+++ ++..+.+.........|.. ......+..++|+|||+ |+.. ... .+.|++++++ .+++..
T Consensus 113 ~~~~~~g~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~spdg~--l~v~-~~~----------~~~v~~~~~~--~~g~~~ 176 (347)
T 3hfq_A 113 MKIAADGALTLTDTVQHSGHGPRP-EQDGSHIHYTDLTPDNR--LAVI-DLG----------SDKVYVYNVS--DAGQLS 176 (347)
T ss_dssp EEECTTSCEEEEEEEECCCCCSST-TCSSCCEEEEEECTTSC--EEEE-ETT----------TTEEEEEEEC--TTSCEE
T ss_pred EEeCCCCCeeecceeecCCCCCCc-cccCCCceEEEECCCCc--EEEE-eCC----------CCEEEEEEEC--CCCcEE
Confidence 8885 3344433322111111100 00001133589999998 5433 211 1247777772 245554
Q ss_pred EEeec----ccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCcccccccC--CCCCceEeccCCCE
Q 005240 293 ILHKL----DLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSD--PGSPMMTRTSTGTN 366 (706)
Q Consensus 293 ~l~~~----~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~s~dg~~ 366 (706)
.+... ......++|+|||+.|++.. ...+...+|.++..++ +...+........... .....+.|+|||++
T Consensus 177 ~~~~~~~~~g~~p~~~~~spdg~~l~v~~-~~~~~v~v~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~ 253 (347)
T 3hfq_A 177 EQSVLTMEAGFGPRHLVFSPDGQYAFLAG-ELSSQIASLKYDTQTG--AFTQLGIVKTIPADYTAHNGAAAIRLSHDGHF 253 (347)
T ss_dssp EEEEEECCTTCCEEEEEECTTSSEEEEEE-TTTTEEEEEEEETTTT--EEEEEEEEESSCTTCCSCCEEEEEEECTTSCE
T ss_pred EeeeEEcCCCCCCceEEECCCCCEEEEEe-CCCCEEEEEEecCCCC--ceEEeeeeeecCCCCCCCCcceeEEECCCCCE
Confidence 43321 22445689999999888764 3334445666665443 3222211110000000 01124778999999
Q ss_pred EEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecC-CCceeeeecccchhhhhhhhhhccCCCceecccCCCEEEEEE
Q 005240 367 VIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDIN-TGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSK 445 (706)
Q Consensus 367 l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~-~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~ 445 (706)
|++.... ...+..++++ +|+.+.+...... -.....+.|||||++|+++.
T Consensus 254 l~v~~~~--------------------~~~v~v~~~~~~g~~~~~~~~~~~---------~~~~~~~~~spdg~~l~v~~ 304 (347)
T 3hfq_A 254 LYVSNRG--------------------YNTLAVFAVTADGHLTLIQQISTE---------GDFPRDFDLDPTEAFVVVVN 304 (347)
T ss_dssp EEEEEET--------------------TTEEEEEEECGGGCEEEEEEEECS---------SSCCCEEEECTTSSEEEEEE
T ss_pred EEEEeCC--------------------CCEEEEEEECCCCcEEEeEEEecC---------CCCcCeEEECCCCCEEEEEE
Confidence 8776532 0124444443 3333333221110 00113578999998776654
Q ss_pred ecCCCCcEEEEEECCCCceeEeec
Q 005240 446 ESKTEITQYHILSWPLKKSSQITN 469 (706)
Q Consensus 446 ~~~~~p~~v~~~~~~~~~~~~lt~ 469 (706)
. ....-.+|.+|.++|+.+.+..
T Consensus 305 ~-~~~~v~v~~~d~~tg~l~~~~~ 327 (347)
T 3hfq_A 305 Q-NTDNATLYARDLTSGKLSLLQK 327 (347)
T ss_dssp T-TTTEEEEEEECTTTCCEEEEEE
T ss_pred c-CCCcEEEEEEeCCCCeEEeccc
Confidence 3 3333345555878888887764
|
| >3h04_A Uncharacterized protein; protein with unknown function, structural genomics, MCSG, PS protein structure initiative; 1.90A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.3e-13 Score=135.85 Aligned_cols=186 Identities=13% Similarity=0.118 Sum_probs=135.0
Q ss_pred eEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEc
Q 005240 482 KEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAG 561 (706)
Q Consensus 482 ~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~ 561 (706)
.+...+.+.||..+++.++.|.. +++.|+||++||+++.. +.+.. +....+..|++. |.|+..
T Consensus 3 ~~~~~~~~~dg~~l~~~~~~p~~-----~~~~~~vv~~HG~~~~~--------~~~~~---~~~~~~~~l~~~-~~v~~~ 65 (275)
T 3h04_A 3 EIKYKVITKDAFALPYTIIKAKN-----QPTKGVIVYIHGGGLMF--------GKAND---LSPQYIDILTEH-YDLIQL 65 (275)
T ss_dssp CEEEEEECTTSCEEEEEEECCSS-----SSCSEEEEEECCSTTTS--------CCTTC---SCHHHHHHHTTT-EEEEEE
T ss_pred ceEEEEecCCcEEEEEEEEccCC-----CCCCCEEEEEECCcccC--------Cchhh---hHHHHHHHHHhC-ceEEee
Confidence 45677888899999999999974 12469999999986321 11111 112345555566 999997
Q ss_pred CCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCCCCC
Q 005240 562 PSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTL 641 (706)
Q Consensus 562 ~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d~~~ 641 (706)
+.++. +.. .....+.|+.++++++.++ ++..+++|+||||||++++.++.+ ++++++|+.+|..+...
T Consensus 66 d~~~~---~~~-----~~~~~~~d~~~~~~~l~~~--~~~~~i~l~G~S~Gg~~a~~~a~~--~~v~~~v~~~~~~~~~~ 133 (275)
T 3h04_A 66 SYRLL---PEV-----SLDCIIEDVYASFDAIQSQ--YSNCPIFTFGRSSGAYLSLLIARD--RDIDGVIDFYGYSRINT 133 (275)
T ss_dssp CCCCT---TTS-----CHHHHHHHHHHHHHHHHHT--TTTSCEEEEEETHHHHHHHHHHHH--SCCSEEEEESCCSCSCS
T ss_pred ccccC---Ccc-----ccchhHHHHHHHHHHHHhh--CCCCCEEEEEecHHHHHHHHHhcc--CCccEEEeccccccccc
Confidence 77633 322 2345678999999999887 567899999999999999999999 78999999998875410
Q ss_pred C----------------------------------------------------------------------------Ccc
Q 005240 642 T----------------------------------------------------------------------------PFG 645 (706)
Q Consensus 642 ~----------------------------------------------------------------------------~~~ 645 (706)
. |..
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l 213 (275)
T 3h04_A 134 EPFKTTNSYYAKIAQSINETMIAQLTSPTPVVQDQIAQRFLIYVYARGTGKWINMINIADYTDSKYNIAPDELKTLPPVF 213 (275)
T ss_dssp HHHHSCCHHHHHHHTTSCHHHHHTTSCSSCCSSCSSGGGHHHHHHHHHHTCHHHHHCCSCTTSGGGSCCHHHHTTCCCEE
T ss_pred cccccccchhhcccccchHHHHhcccCCCCcCCCccccchhhhhhhhhcCchHHhhccccccccccccccchhccCCCEE
Confidence 0 000
Q ss_pred c--------hHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccH--HHHHHHHHHHHHHHhc
Q 005240 646 F--------QAERFFDALKGHGALSRLVLLPFEHHVYAARENV--MHVIWETDRWLQKYCL 696 (706)
Q Consensus 646 ~--------~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~--~~~~~~~~~f~~~~l~ 696 (706)
. -+.+..+.+.+.-...+++++|+++|.+...... .++.+.+.+||++++.
T Consensus 214 ii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~i~~fl~~~l~ 274 (275)
T 3h04_A 214 IAHCNGDYDVPVEESEHIMNHVPHSTFERVNKNEHDFDRRPNDEAITIYRKVVDFLNAITM 274 (275)
T ss_dssp EEEETTCSSSCTHHHHHHHTTCSSEEEEEECSSCSCTTSSCCHHHHHHHHHHHHHHHHHHC
T ss_pred EEecCCCCCCChHHHHHHHHhcCCceEEEeCCCCCCcccCCchhHHHHHHHHHHHHHHHhc
Confidence 0 0006666777666678999999999998755443 7899999999999874
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.58 E-value=3.5e-12 Score=134.62 Aligned_cols=297 Identities=9% Similarity=0.052 Sum_probs=177.7
Q ss_pred CcccceeeCCCC-CeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEec-CCcEEEEEecCC
Q 005240 31 AKINFVSWSPDG-KRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVN-NSTLLIFTIPSS 108 (706)
Q Consensus 31 ~~~~~~~~SPDG-~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSp-Dg~~l~~~~~~~ 108 (706)
..+..++||||| +.||.... ...|.++++.+++.......... ...+..+.|+| |++.|+..+.
T Consensus 74 ~~v~~~~~~~~~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~l~s~~~-- 139 (383)
T 3ei3_B 74 RRVTSLEWHPTHPTTVAVGSK----------GGDIILWDYDVQNKTSFIQGMGP--GDAITGMKFNQFNTNQLFVSSI-- 139 (383)
T ss_dssp SCEEEEEECSSCTTEEEEEEB----------TSCEEEEETTSTTCEEEECCCST--TCBEEEEEEETTEEEEEEEEET--
T ss_pred CCEEEEEECCCCCCEEEEEcC----------CCeEEEEeCCCcccceeeecCCc--CCceeEEEeCCCCCCEEEEEeC--
Confidence 358899999999 77766542 24677788887776555431111 12377899999 6677776532
Q ss_pred CCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCC-CceecCCC----ceEeeeeeC
Q 005240 109 RRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TAKDFGTP----AVYTAVEPS 183 (706)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g-~~~~lt~~----~~~~~~~~S 183 (706)
.+.|.++++.+ ....+... ..+..++|+
T Consensus 140 -----------------------------------------------d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~ 172 (383)
T 3ei3_B 140 -----------------------------------------------RGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVS 172 (383)
T ss_dssp -----------------------------------------------TTEEEEEETTSCEEEEEECCCCSSCCEEEEEEE
T ss_pred -----------------------------------------------CCEEEEEECCCCceEEEeccCCCCCCeEEEEEC
Confidence 15677788865 33333322 457899999
Q ss_pred CCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEec
Q 005240 184 PDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQ 263 (706)
Q Consensus 184 pDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~ 263 (706)
|||+.|+..... ..|.+|++.+.....+.... ..+..+.|+|+++..|+ ....
T Consensus 173 ~~~~~l~~~~~d-------------~~i~i~d~~~~~~~~~~~h~-------------~~v~~~~~~~~~~~~l~-s~~~ 225 (383)
T 3ei3_B 173 VSRQMLATGDST-------------GRLLLLGLDGHEIFKEKLHK-------------AKVTHAEFNPRCDWLMA-TSSV 225 (383)
T ss_dssp TTTTEEEEEETT-------------SEEEEEETTSCEEEEEECSS-------------SCEEEEEECSSCTTEEE-EEET
T ss_pred CCCCEEEEECCC-------------CCEEEEECCCCEEEEeccCC-------------CcEEEEEECCCCCCEEE-EEeC
Confidence 999998766543 38999999877766665432 22457899999985243 3221
Q ss_pred cCCCCccccCccceeeeecCCCCCC----CCceEEeecccccccceecC-CCceEEEEeeccccceEEEEEcCCCCCCCc
Q 005240 264 DRGDANVEVSPRDIIYTQPAEPAEG----EKPEILHKLDLRFRSVSWCD-DSLALVNETWYKTSQTRTWLVCPGSKDVAP 338 (706)
Q Consensus 264 ~~~~~~~~~~~~~~l~~~d~~~~~~----~~~~~l~~~~~~~~~~~wsp-Dg~~l~~~~~~~~~~~~l~~~d~~~~~~~~ 338 (706)
+ ..|.+||+ .. +...........+..+.|+| ||+.|+..+. ...|.++|+.+++ ..
T Consensus 226 d-----------~~i~iwd~---~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~----d~~i~iwd~~~~~-~~ 286 (383)
T 3ei3_B 226 D-----------ATVKLWDL---RNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQ----RNEIRVYSSYDWS-KP 286 (383)
T ss_dssp T-----------SEEEEEEG---GGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEES----SSEEEEEETTBTT-SC
T ss_pred C-----------CEEEEEeC---CCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcC----CCcEEEEECCCCc-cc
Confidence 1 24778888 33 23333345677889999999 9998887652 2357777877753 22
Q ss_pred eeeecCcccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeeecccchhh
Q 005240 339 RVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKY 418 (706)
Q Consensus 339 ~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~ 418 (706)
..+..... ............|+|++..++.....+ +.+ . | +....+..+|+.+++..........
T Consensus 287 ~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~~~s~d---g~~---s--~----s~d~~i~iwd~~~~~~~~~l~~~~~-- 351 (383)
T 3ei3_B 287 DQIIIHPH-RQFQHLTPIKATWHPMYDLIVAGRYPD---DQL---L--L----NDKRTIDIYDANSGGLVHQLRDPNA-- 351 (383)
T ss_dssp SEEEECCB-CCCTTSCCCCCEECSSSSEEEEECBCC---TTT---C--T----TCCCCEEEEETTTCCEEEEECBTTB--
T ss_pred cccccccc-cccccccceEEeccCCCCceEEEecCC---ccc---c--c----CCCCeEEEEecCCCceeeeecCCCC--
Confidence 22221110 000011122346777777766543221 111 1 1 1223477788888875444332110
Q ss_pred hhhhhhhccCCCceecccCCCEEEEEEecCCCCcEEEEEECCC
Q 005240 419 FETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPL 461 (706)
Q Consensus 419 ~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~p~~v~~~~~~~ 461 (706)
........|+||++.|+.. ++ ..|.+|++++
T Consensus 352 -------~~~~~~~~~s~~g~~l~s~-sd----~~i~iw~~~~ 382 (383)
T 3ei3_B 352 -------AGIISLNKFSPTGDVLASG-MG----FNILIWNRED 382 (383)
T ss_dssp -------CSCCCEEEECTTSSEEEEE-ET----TEEEEEECC-
T ss_pred -------CceEEEEEEecCccEEEEe-cC----CcEEEEecCC
Confidence 0111235899999877655 32 5699998753
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=2.2e-12 Score=142.37 Aligned_cols=331 Identities=9% Similarity=0.011 Sum_probs=188.1
Q ss_pred cceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEc--CCCceeecccCCC
Q 005240 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADA--ETGEAKPLFESPD 82 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~--~~g~~~~lt~~~~ 82 (706)
..|.+.|+.. ++.... ++.+..+..+++||||++|+.... + ..|.++|+ ++++...-.....
T Consensus 159 ~~V~v~D~~t----~~~~~~--i~~g~~~~~v~~spdg~~l~v~~~--------d--~~V~v~D~~~~t~~~~~~i~~g~ 222 (543)
T 1nir_A 159 GQIALVDGDS----KKIVKV--IDTGYAVHISRMSASGRYLLVIGR--------D--ARIDMIDLWAKEPTKVAEIKIGI 222 (543)
T ss_dssp TEEEEEETTT----CCEEEE--EECSTTEEEEEECTTSCEEEEEET--------T--SEEEEEETTSSSCEEEEEEECCS
T ss_pred CeEEEEECCC----ceEEEE--EecCcccceEEECCCCCEEEEECC--------C--CeEEEEECcCCCCcEEEEEecCC
Confidence 4578888866 655433 334444778899999999966531 2 68999999 6665433222222
Q ss_pred ccccccccceEEec----CCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccce
Q 005240 83 ICLNAVFGSFVWVN----NSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQ 158 (706)
Q Consensus 83 ~~~~~~~~~~~wSp----Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 158 (706)
.+..+++|| ||++|++... ....
T Consensus 223 -----~p~~va~sp~~~~dg~~l~v~~~------------------------------------------------~~~~ 249 (543)
T 1nir_A 223 -----EARSVESSKFKGYEDRYTIAGAY------------------------------------------------WPPQ 249 (543)
T ss_dssp -----EEEEEEECCSTTCTTTEEEEEEE------------------------------------------------ESSE
T ss_pred -----CcceEEeCCCcCCCCCEEEEEEc------------------------------------------------cCCe
Confidence 267889999 9999887632 1145
Q ss_pred EEEEcc-CCCce-ecCCC------------ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEc
Q 005240 159 LVLGSL-DGTAK-DFGTP------------AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVREL 224 (706)
Q Consensus 159 l~~~~l-~g~~~-~lt~~------------~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 224 (706)
|.++|. ++++. .+... ..+..+.+|||++.++++... ...|.+|++...+...+
T Consensus 250 v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~------------~g~i~vvd~~~~~~l~~ 317 (543)
T 1nir_A 250 FAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE------------TGKVLLVNYKDIDNLTV 317 (543)
T ss_dssp EEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT------------TTEEEEEECTTSSSCEE
T ss_pred EEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECC------------CCeEEEEEecCCCccee
Confidence 666776 44332 22211 145678999999988776543 25899999975432111
Q ss_pred ccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecc---ccc
Q 005240 225 CDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLD---LRF 301 (706)
Q Consensus 225 ~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~---~~~ 301 (706)
+..... ..+..+.|+|||+. |+... . ..+.|.++|. .+++........ ...
T Consensus 318 ~~i~~~-----------~~~~~~~~spdg~~-l~va~-~----------~~~~v~v~D~---~tg~l~~~i~~g~~ph~g 371 (543)
T 1nir_A 318 TSIGAA-----------PFLHDGGWDSSHRY-FMTAA-N----------NSNKVAVIDS---KDRRLSALVDVGKTPHPG 371 (543)
T ss_dssp EEEECC-----------SSCCCEEECTTSCE-EEEEE-G----------GGTEEEEEET---TTTEEEEEEECSSSBCCT
T ss_pred EEeccC-----------cCccCceECCCCCE-EEEEe-c----------CCCeEEEEEC---CCCeEEEeeccCCCCCCC
Confidence 111110 12457899999996 54332 1 1124778888 566554433211 111
Q ss_pred cccee-cCCCceEEEEeeccccceEEEEEcCCCCC-----CCceeeecCcccccccCCCCCceEeccCCCEEEEeeeccC
Q 005240 302 RSVSW-CDDSLALVNETWYKTSQTRTWLVCPGSKD-----VAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKEN 375 (706)
Q Consensus 302 ~~~~w-spDg~~l~~~~~~~~~~~~l~~~d~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~ 375 (706)
..+.| +|++..++++....++ .|-++|.++.+ .+........ ..+...+.++|||++|+.....
T Consensus 372 ~g~~~~~p~~g~~~~s~~~~d~--~V~v~d~~~~~~~~~~~~~v~~l~~~------g~~~~~v~~~pdg~~l~v~~~~-- 441 (543)
T 1nir_A 372 RGANFVHPKYGPVWSTSHLGDG--SISLIGTDPKNHPQYAWKKVAELQGQ------GGGSLFIKTHPKSSHLYVDTTF-- 441 (543)
T ss_dssp TCEEEEETTTEEEEEEEBSSSS--EEEEEECCTTTCTTTBTSEEEEEECS------CSCCCCEECCTTCCEEEECCTT--
T ss_pred CCcccCCCCCccEEEeccCCCc--eEEEEEeCCCCCchhcCeEEEEEEcC------CCCceEEEcCCCCCcEEEecCC--
Confidence 22333 6886666554322223 35566655521 1111112211 1233457789999999876411
Q ss_pred CcceEEEEecCCCCCCC-CCCceeeeecCCCcee-eeecccchhhhhhhhhhccCCCceecccCCCEEEEEEecC-CCCc
Q 005240 376 DEQIYILLNGRGFTPEG-NIPFLDLFDINTGSKE-RIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESK-TEIT 452 (706)
Q Consensus 376 ~~~~~~~~~~~g~~~~~-~~~~l~~~d~~~g~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~-~~p~ 452 (706)
.++. ....+..+|+++++.. +++..... ..+...-.....+.|+|||++++++..+. ....
T Consensus 442 -------------~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~---~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~ 505 (543)
T 1nir_A 442 -------------NPDARISQSVAVFDLKNLDAKYQVLPIAEW---ADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSS 505 (543)
T ss_dssp -------------CSSHHHHTCEEEEETTCTTSCCEEECHHHH---HCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCC
T ss_pred -------------CCCcccCceEEEEECCCCCCCeEEeechhh---cccCCCCCceEeccCCCCCCEEEEEeecCCCCCC
Confidence 0100 0124778888887654 33322110 00000001112579999999999887654 3467
Q ss_pred EEEEEECCCCceeEee
Q 005240 453 QYHILSWPLKKSSQIT 468 (706)
Q Consensus 453 ~v~~~~~~~~~~~~lt 468 (706)
.|.+||.++++++..-
T Consensus 506 ~i~v~D~~t~~~~~~i 521 (543)
T 1nir_A 506 ALVVVDDKTLKLKAVV 521 (543)
T ss_dssp EEEEEETTTTEEEEEE
T ss_pred eEEEEECCCceEEEee
Confidence 8999999999876544
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.58 E-value=9.5e-13 Score=140.50 Aligned_cols=240 Identities=11% Similarity=0.113 Sum_probs=135.6
Q ss_pred CcccceeeCCCCC-eEEEEeeccccccccCCceeEEEEEc----CCCc-------eeecccCCCcc-----ccccccceE
Q 005240 31 AKINFVSWSPDGK-RIAFSVRVDEEDNVSSCKLRVWIADA----ETGE-------AKPLFESPDIC-----LNAVFGSFV 93 (706)
Q Consensus 31 ~~~~~~~~SPDG~-~laf~~~~~~~~~~~~~~~~l~~~d~----~~g~-------~~~lt~~~~~~-----~~~~~~~~~ 93 (706)
..+..++|||||+ +||.... + ..|.++++ .+++ ...+....... ....+..+.
T Consensus 46 ~~v~~~~~s~~~~~~l~~~~~--------d--g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (425)
T 1r5m_A 46 DNIVSSTWNPLDESILAYGEK--------N--SVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLA 115 (425)
T ss_dssp SCCSEEEECSSCTTEEEEEET--------B--TEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEE
T ss_pred CceEEEEECCCCCcEEEEecC--------C--ceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEE
Confidence 3688999999999 8877642 3 45666666 6665 22232210000 011377899
Q ss_pred EecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCC-CceecC
Q 005240 94 WVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TAKDFG 172 (706)
Q Consensus 94 wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g-~~~~lt 172 (706)
|+|||++|+..... +.|.+++.++ ....+.
T Consensus 116 ~s~~~~~l~~~~~d-------------------------------------------------g~i~i~~~~~~~~~~~~ 146 (425)
T 1r5m_A 116 WSHDGNSIVTGVEN-------------------------------------------------GELRLWNKTGALLNVLN 146 (425)
T ss_dssp ECTTSSEEEEEETT-------------------------------------------------SCEEEEETTSCEEEEEC
T ss_pred EcCCCCEEEEEeCC-------------------------------------------------CeEEEEeCCCCeeeecc
Confidence 99999998876421 4566667766 444454
Q ss_pred CC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCC--------------------
Q 005240 173 TP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAE-------------------- 231 (706)
Q Consensus 173 ~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~-------------------- 231 (706)
.. ..+..++|+|||++|+..+..+ .+.+|++.+++...........
T Consensus 147 ~~~~~v~~~~~~~~~~~l~~~~~d~-------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (425)
T 1r5m_A 147 FHRAPIVSVKWNKDGTHIISMDVEN-------------VTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVE 213 (425)
T ss_dssp CCCSCEEEEEECTTSSEEEEEETTC-------------CEEEEETTTTEEEEEECCC---------------CCCBSCCE
T ss_pred CCCccEEEEEECCCCCEEEEEecCC-------------eEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEE
Confidence 44 6788999999999998766432 5666666544322211111000
Q ss_pred -----------------------CCCc-ccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCC
Q 005240 232 -----------------------DIPV-CYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAE 287 (706)
Q Consensus 232 -----------------------~~p~-~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~ 287 (706)
..+. .+......+..+.|+|+++. |+... . ...|.++|+ .
T Consensus 214 ~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~-~-----------d~~i~i~d~---~ 277 (425)
T 1r5m_A 214 WVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKL-LLSAS-D-----------DGTLRIWHG---G 277 (425)
T ss_dssp EEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTE-EEEEE-T-----------TSCEEEECS---S
T ss_pred EcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCE-EEEEc-C-----------CCEEEEEEC---C
Confidence 0000 00000112346788888875 44331 1 124788887 4
Q ss_pred CCC-ceEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCE
Q 005240 288 GEK-PEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTN 366 (706)
Q Consensus 288 ~~~-~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~ 366 (706)
.++ ...+......+..+.|+||+ .|+..+ . ...|.++|+.++ +........-. ....+.|+|+|++
T Consensus 278 ~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~-~---d~~i~i~d~~~~--~~~~~~~~~~~------~i~~~~~s~~~~~ 344 (425)
T 1r5m_A 278 NGNSQNCFYGHSQSIVSASWVGDD-KVISCS-M---DGSVRLWSLKQN--TLLALSIVDGV------PIFAGRISQDGQK 344 (425)
T ss_dssp SBSCSEEECCCSSCEEEEEEETTT-EEEEEE-T---TSEEEEEETTTT--EEEEEEECTTC------CEEEEEECTTSSE
T ss_pred CCccceEecCCCccEEEEEECCCC-EEEEEe-C---CCcEEEEECCCC--cEeEecccCCc------cEEEEEEcCCCCE
Confidence 444 34455567788899999999 555543 2 235778888763 23332221111 1223678999998
Q ss_pred EEEee
Q 005240 367 VIAKI 371 (706)
Q Consensus 367 l~~~~ 371 (706)
|+...
T Consensus 345 l~~~~ 349 (425)
T 1r5m_A 345 YAVAF 349 (425)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 87764
|
| >1auo_A Carboxylesterase; hydrolase; 1.80A {Pseudomonas fluorescens} SCOP: c.69.1.14 PDB: 1aur_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=2.1e-13 Score=131.45 Aligned_cols=163 Identities=17% Similarity=0.080 Sum_probs=118.7
Q ss_pred CceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHH--CCeEEEEcCCC----------------CcCCCCCCC
Q 005240 512 PLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA--RRFAVLAGPSI----------------PIIGEGDKL 573 (706)
Q Consensus 512 ~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~G~~v~~~~~~----------------~~~g~g~~~ 573 (706)
+.|+||++||.+.. ... ....+..|++ .||.|+.++.. ...|+|...
T Consensus 13 ~~~~vv~~HG~~~~-----------~~~----~~~~~~~l~~~~~g~~v~~~d~p~~~~~~~~g~~~~~w~d~~g~g~~~ 77 (218)
T 1auo_A 13 ADACVIWLHGLGAD-----------RYD----FMPVAEALQESLLTTRFVLPQAPTRPVTINGGYEMPSWYDIKAMSPAR 77 (218)
T ss_dssp CSEEEEEECCTTCC-----------TTT----THHHHHHHHTTCTTEEEEECCCCEEEEGGGTTEEEECSSCEEECSSSC
T ss_pred CCcEEEEEecCCCC-----------hhh----HHHHHHHHhhcCCceEEEeCCCCCccccCCCCCcccceecCcCCCccc
Confidence 47999999996421 011 1245677777 99999996643 222444321
Q ss_pred C-chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHH-hCCCceeEEEeccCCCCCCC----------
Q 005240 574 P-NDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLA-HAPHLFCCGIARSGSYNKTL---------- 641 (706)
Q Consensus 574 ~-~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~-~~p~~~~a~v~~~~~~d~~~---------- 641 (706)
. .........+|+..+++++.+ ..+|+++|+++|+|+||++++.++. ++|++++++++.+|......
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 156 (218)
T 1auo_A 78 SISLEELEVSAKMVTDLIEAQKR-TGIDASRIFLAGFSQGGAVVFHTAFINWQGPLGGVIALSTYAPTFGDELELSASQQ 156 (218)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHH-TTCCGGGEEEEEETHHHHHHHHHHHTTCCSCCCEEEEESCCCTTCCTTCCCCHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHH-cCCCcccEEEEEECHHHHHHHHHHHhcCCCCccEEEEECCCCCCchhhhhhhhccc
Confidence 1 223355667888888888876 3478899999999999999999999 99999999999999876311
Q ss_pred -CCcc---------c---hHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHhc
Q 005240 642 -TPFG---------F---QAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCL 696 (706)
Q Consensus 642 -~~~~---------~---~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~~~~l~ 696 (706)
.|.. . ..+++++.|...+.++++++++ ++|.+.. +..+.+.+||+++|+
T Consensus 157 ~~P~l~i~G~~D~~~~~~~~~~~~~~l~~~g~~~~~~~~~-~gH~~~~-----~~~~~~~~~l~~~l~ 218 (218)
T 1auo_A 157 RIPALCLHGQYDDVVQNAMGRSAFEHLKSRGVTVTWQEYP-MGHEVLP-----QEIHDIGAWLAARLG 218 (218)
T ss_dssp TCCEEEEEETTCSSSCHHHHHHHHHHHHTTTCCEEEEEES-CSSSCCH-----HHHHHHHHHHHHHHC
T ss_pred CCCEEEEEeCCCceecHHHHHHHHHHHHhCCCceEEEEec-CCCccCH-----HHHHHHHHHHHHHhC
Confidence 1110 0 2348889999988899999999 9998753 457889999999873
|
| >1jji_A Carboxylesterase; alpha-beta hydrolase fold, hydrolase; HET: EPE; 2.20A {Archaeoglobus fulgidus} SCOP: c.69.1.2 | Back alignment and structure |
|---|
Probab=99.58 E-value=8.8e-15 Score=149.96 Aligned_cols=185 Identities=17% Similarity=0.089 Sum_probs=133.9
Q ss_pred ceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHH-HCCeEEE
Q 005240 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFL-ARRFAVL 559 (706)
Q Consensus 481 ~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~G~~v~ 559 (706)
..+.+++++.+| .+++++| |. .++.|+||++|||++.. ++...+ ..++..|+ +.||.|+
T Consensus 55 ~~~~~~i~~~~g-~i~~~~y-~~------~~~~p~vv~~HGgg~~~--------g~~~~~----~~~~~~la~~~g~~Vv 114 (311)
T 1jji_A 55 RVEDRTIKGRNG-DIRVRVY-QQ------KPDSPVLVYYHGGGFVI--------CSIESH----DALCRRIARLSNSTVV 114 (311)
T ss_dssp EEEEEEEEETTE-EEEEEEE-ES------SSSEEEEEEECCSTTTS--------CCTGGG----HHHHHHHHHHHTSEEE
T ss_pred eEEEEEecCCCC-cEEEEEE-cC------CCCceEEEEECCccccc--------CChhHh----HHHHHHHHHHhCCEEE
Confidence 578888988787 8999999 42 12479999999986532 111111 23556677 5899999
Q ss_pred EcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcC---CCCCCcEEEEEechHHHHHHHHHHhCCCc----eeEEEe
Q 005240 560 AGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRG---VADPSRIAVGGHSYGAFMTAHLLAHAPHL----FCCGIA 632 (706)
Q Consensus 560 ~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~---~id~~~i~i~G~S~GG~~a~~~~~~~p~~----~~a~v~ 632 (706)
.+++++ .|+... .....|+.++++|+.+.. .+|+++|+|+|+|+||++|+.++.+.|++ ++++++
T Consensus 115 ~~dyrg---~g~~~~-----p~~~~d~~~~~~~l~~~~~~~~~d~~~i~l~G~S~GG~la~~~a~~~~~~~~~~~~~~vl 186 (311)
T 1jji_A 115 SVDYRL---APEHKF-----PAAVYDCYDATKWVAENAEELRIDPSKIFVGGDSAGGNLAAAVSIMARDSGEDFIKHQIL 186 (311)
T ss_dssp EEECCC---TTTSCT-----THHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTTCCCEEEEEE
T ss_pred EecCCC---CCCCCC-----CCcHHHHHHHHHHHHhhHHHhCCCchhEEEEEeCHHHHHHHHHHHHHHhcCCCCceEEEE
Confidence 988764 443321 224678888888888752 37888999999999999999999887665 999999
Q ss_pred ccCCCCCCCC-------------------------------------------------Ccc----------chHHHHHH
Q 005240 633 RSGSYNKTLT-------------------------------------------------PFG----------FQAERFFD 653 (706)
Q Consensus 633 ~~~~~d~~~~-------------------------------------------------~~~----------~~~~~~~~ 653 (706)
.+|..+.... |.. -+..++++
T Consensus 187 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~P~li~~G~~D~l~~~~~~~~~ 266 (311)
T 1jji_A 187 IYPVVNFVAPTPSLLEFGEGLWILDQKIMSWFSEQYFSREEDKFNPLASVIFADLENLPPALIITAEYDPLRDEGEVFGQ 266 (311)
T ss_dssp ESCCCCSSSCCHHHHHTSSSCSSCCHHHHHHHHHHHCSSGGGGGCTTTSGGGSCCTTCCCEEEEEEEECTTHHHHHHHHH
T ss_pred eCCccCCCCCCccHHHhcCCCccCCHHHHHHHHHHhCCCCccCCCcccCcccccccCCChheEEEcCcCcchHHHHHHHH
Confidence 9997653210 000 01226889
Q ss_pred HHHhCCCcEEEEEeCCCCccCCCc----ccHHHHHHHHHHHHHH
Q 005240 654 ALKGHGALSRLVLLPFEHHVYAAR----ENVMHVIWETDRWLQK 693 (706)
Q Consensus 654 ~l~~~~~~~~~~~~~~~~H~~~~~----~~~~~~~~~~~~f~~~ 693 (706)
+|++.++++++++|||++|.|... ....++.+.+.+||++
T Consensus 267 ~l~~~g~~~~~~~~~g~~H~~~~~~~~~~~~~~~~~~i~~fl~~ 310 (311)
T 1jji_A 267 MLRRAGVEASIVRYRGVLHGFINYYPVLKAARDAINQIAALLVF 310 (311)
T ss_dssp HHHHTTCCEEEEEEEEEETTGGGGTTTCHHHHHHHHHHHHHHHC
T ss_pred HHHHcCCCEEEEEECCCCeeccccCCcCHHHHHHHHHHHHHHhh
Confidence 999999999999999999988632 2346778888888864
|
| >2wtm_A EST1E; hydrolase; 1.60A {Clostridium proteoclasticum} PDB: 2wtn_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=9.6e-14 Score=137.41 Aligned_cols=187 Identities=16% Similarity=0.100 Sum_probs=129.8
Q ss_pred EEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCC
Q 005240 485 IKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSI 564 (706)
Q Consensus 485 ~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~ 564 (706)
+++.. ||..|.++++.|++. . ++.|+||++||.+.. .........+..|++.||.|+..+.+
T Consensus 4 ~~~~~-~g~~l~~~~~~p~~~-~---~~~p~vvl~HG~~~~-------------~~~~~~~~~~~~l~~~g~~vi~~D~~ 65 (251)
T 2wtm_A 4 MYIDC-DGIKLNAYLDMPKNN-P---EKCPLCIIIHGFTGH-------------SEERHIVAVQETLNEIGVATLRADMY 65 (251)
T ss_dssp EEEEE-TTEEEEEEEECCTTC-C---SSEEEEEEECCTTCC-------------TTSHHHHHHHHHHHHTTCEEEEECCT
T ss_pred eEEec-CCcEEEEEEEccCCC-C---CCCCEEEEEcCCCcc-------------cccccHHHHHHHHHHCCCEEEEecCC
Confidence 45554 899999999999752 1 236899999995311 00000113456788899999996665
Q ss_pred CcCCCCCCCCc--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCCC---
Q 005240 565 PIIGEGDKLPN--DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNK--- 639 (706)
Q Consensus 565 ~~~g~g~~~~~--~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d~--- 639 (706)
|+|.+... ........+|+.++++++.++..+ +++.++||||||.+++.++.++|++++++|+.+|....
T Consensus 66 ---G~G~S~~~~~~~~~~~~~~d~~~~~~~l~~~~~~--~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~ 140 (251)
T 2wtm_A 66 ---GHGKSDGKFEDHTLFKWLTNILAVVDYAKKLDFV--TDIYMAGHSQGGLSVMLAAAMERDIIKALIPLSPAAMIPEI 140 (251)
T ss_dssp ---TSTTSSSCGGGCCHHHHHHHHHHHHHHHTTCTTE--EEEEEEEETHHHHHHHHHHHHTTTTEEEEEEESCCTTHHHH
T ss_pred ---CCCCCCCccccCCHHHHHHHHHHHHHHHHcCccc--ceEEEEEECcchHHHHHHHHhCcccceEEEEECcHHHhHHH
Confidence 55555332 123456688999999999765444 48999999999999999999999999999999886320
Q ss_pred -------------CCCCcc-------------------ch--H---------------------HHHHHHHHhCCCcEEE
Q 005240 640 -------------TLTPFG-------------------FQ--A---------------------ERFFDALKGHGALSRL 664 (706)
Q Consensus 640 -------------~~~~~~-------------------~~--~---------------------~~~~~~l~~~~~~~~~ 664 (706)
...+.. +. . .+..+.+.+.-...++
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~~~~~~~ 220 (251)
T 2wtm_A 141 ARTGELLGLKFDPENIPDELDAWDGRKLKGNYVRVAQTIRVEDFVDKYTKPVLIVHGDQDEAVPYEASVAFSKQYKNCKL 220 (251)
T ss_dssp HHHTEETTEECBTTBCCSEEEETTTEEEETHHHHHHTTCCHHHHHHHCCSCEEEEEETTCSSSCHHHHHHHHHHSSSEEE
T ss_pred HhhhhhccccCCchhcchHHhhhhccccchHHHHHHHccCHHHHHHhcCCCEEEEEeCCCCCcChHHHHHHHHhCCCcEE
Confidence 000100 00 0 0334444433346899
Q ss_pred EEeCCCCccCCCcccHHHHHHHHHHHHHHHhc
Q 005240 665 VLLPFEHHVYAARENVMHVIWETDRWLQKYCL 696 (706)
Q Consensus 665 ~~~~~~~H~~~~~~~~~~~~~~~~~f~~~~l~ 696 (706)
+++|+++|.+ ......+.+.+.+||++++.
T Consensus 221 ~~~~~~gH~~--~~~~~~~~~~i~~fl~~~~~ 250 (251)
T 2wtm_A 221 VTIPGDTHCY--DHHLELVTEAVKEFMLEQIA 250 (251)
T ss_dssp EEETTCCTTC--TTTHHHHHHHHHHHHHHHHC
T ss_pred EEECCCCccc--chhHHHHHHHHHHHHHHhcc
Confidence 9999999998 56778899999999999875
|
| >3hju_A Monoglyceride lipase; alpha/beta hydrolase, hydrolase, serine esterase; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.5e-13 Score=142.68 Aligned_cols=133 Identities=17% Similarity=0.166 Sum_probs=101.6
Q ss_pred CceEEE-EEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEE
Q 005240 480 LQKEMI-KYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAV 558 (706)
Q Consensus 480 ~~~~~~-~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v 558 (706)
+..+.+ .+...||..|.++++.|.+ .+.|+||++||.+... . .....+..|+++||.|
T Consensus 32 ~~~~~~~~~~~~dg~~l~~~~~~p~~------~~~p~vv~~HG~~~~~-----------~----~~~~~~~~l~~~g~~v 90 (342)
T 3hju_A 32 IPYQDLPHLVNADGQYLFCRYWKPTG------TPKALIFVSHGAGEHS-----------G----RYEELARMLMGLDLLV 90 (342)
T ss_dssp CBTTSSCEEECTTSCEEEEEEECCSS------CCSEEEEEECCTTCCG-----------G----GGHHHHHHHHTTTEEE
T ss_pred cccccCceEEccCCeEEEEEEeCCCC------CCCcEEEEECCCCccc-----------c----hHHHHHHHHHhCCCeE
Confidence 344455 6778899999999998864 1358999999974210 1 1124567788889999
Q ss_pred EEcCCCCcCCCCCCCCc---hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccC
Q 005240 559 LAGPSIPIIGEGDKLPN---DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSG 635 (706)
Q Consensus 559 ~~~~~~~~~g~g~~~~~---~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~ 635 (706)
+..+.+ |+|.+... .......++|+.++++++..+ .+..+|+|+|+|+||++++.++.++|++++++|+.+|
T Consensus 91 i~~D~~---G~G~S~~~~~~~~~~~~~~~d~~~~l~~l~~~--~~~~~v~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~ 165 (342)
T 3hju_A 91 FAHDHV---GHGQSEGERMVVSDFHVFVRDVLQHVDSMQKD--YPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISP 165 (342)
T ss_dssp EEECCT---TSTTSCSSTTCCSCTHHHHHHHHHHHHHHHHH--STTCCEEEEEETHHHHHHHHHHHHSTTTCSEEEEESC
T ss_pred EEEcCC---CCcCCCCcCCCcCcHHHHHHHHHHHHHHHHHh--CCCCcEEEEEeChHHHHHHHHHHhCccccceEEEECc
Confidence 997766 44544321 233566789999999999887 4567999999999999999999999999999999998
Q ss_pred CCC
Q 005240 636 SYN 638 (706)
Q Consensus 636 ~~d 638 (706)
...
T Consensus 166 ~~~ 168 (342)
T 3hju_A 166 LVL 168 (342)
T ss_dssp CCS
T ss_pred ccc
Confidence 754
|
| >3vis_A Esterase; alpha/beta-hydrolase fold, polyethylene terephthal hydrolase; HET: PE4; 1.76A {Thermobifida alba} | Back alignment and structure |
|---|
Probab=99.57 E-value=3.6e-14 Score=145.03 Aligned_cols=176 Identities=17% Similarity=0.188 Sum_probs=129.0
Q ss_pred cCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCC
Q 005240 490 KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGE 569 (706)
Q Consensus 490 ~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~ 569 (706)
.+|.. .+.+++|.... +.|+||++||.+.. ...+ ..++..|+++||.|+.+++++ +
T Consensus 79 ~~g~~-~~~~~~p~~~~-----~~p~vv~~HG~~~~-----------~~~~----~~~~~~la~~G~~vv~~d~~g---~ 134 (306)
T 3vis_A 79 ADGFG-GGTIYYPRENN-----TYGAIAISPGYTGT-----------QSSI----AWLGERIASHGFVVIAIDTNT---T 134 (306)
T ss_dssp CSSSC-CEEEEEESSCS-----CEEEEEEECCTTCC-----------HHHH----HHHHHHHHTTTEEEEEECCSS---T
T ss_pred cCCCc-ceEEEeeCCCC-----CCCEEEEeCCCcCC-----------HHHH----HHHHHHHHhCCCEEEEecCCC---C
Confidence 34533 46788887621 47999999996421 1111 245677888999999977763 4
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHHHHc------CCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCCCCC--
Q 005240 570 GDKLPNDRFVEQLVSSAEAAVEEVVRR------GVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTL-- 641 (706)
Q Consensus 570 g~~~~~~~~~~~~~~D~~~~~~~l~~~------~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d~~~-- 641 (706)
|.+ ......|+..+++|+.+. ..+|++||+++|+|+||++++.++.++|+ ++++++.+|......
T Consensus 135 g~s------~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~v~l~G~S~GG~~a~~~a~~~p~-v~~~v~~~~~~~~~~~~ 207 (306)
T 3vis_A 135 LDQ------PDSRARQLNAALDYMLTDASSAVRNRIDASRLAVMGHSMGGGGTLRLASQRPD-LKAAIPLTPWHLNKSWR 207 (306)
T ss_dssp TCC------HHHHHHHHHHHHHHHHHTSCHHHHTTEEEEEEEEEEETHHHHHHHHHHHHCTT-CSEEEEESCCCSCCCCT
T ss_pred CCC------cchHHHHHHHHHHHHHhhcchhhhccCCcccEEEEEEChhHHHHHHHHhhCCC-eeEEEEeccccCccccc
Confidence 433 123457888999999987 67889999999999999999999999976 999999998654221
Q ss_pred ---CC-------------ccchHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHhccC
Q 005240 642 ---TP-------------FGFQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCLSN 698 (706)
Q Consensus 642 ---~~-------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~~~~l~~~ 698 (706)
.| ...+.++++++|...+ +++++++++++|.+... ...++.+.+.+||++++...
T Consensus 208 ~~~~P~lii~G~~D~~~~~~~~~~~~~~~l~~~~-~~~~~~~~g~gH~~~~~-~~~~~~~~i~~fl~~~l~~~ 278 (306)
T 3vis_A 208 DITVPTLIIGAEYDTIASVTLHSKPFYNSIPSPT-DKAYLELDGASHFAPNI-TNKTIGMYSVAWLKRFVDED 278 (306)
T ss_dssp TCCSCEEEEEETTCSSSCTTTTHHHHHHTCCTTS-CEEEEEETTCCTTGGGS-CCHHHHHHHHHHHHHHHSCC
T ss_pred cCCCCEEEEecCCCcccCcchhHHHHHHHhccCC-CceEEEECCCCccchhh-chhHHHHHHHHHHHHHccCc
Confidence 12 1113557777777665 89999999999998643 33678899999999998754
|
| >3d7r_A Esterase; alpha/beta fold, hydrolase; 2.01A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.8e-14 Score=148.81 Aligned_cols=174 Identities=8% Similarity=-0.033 Sum_probs=126.9
Q ss_pred EEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHH-HCCeEEEEcCCCCcCCCCCCC
Q 005240 495 LTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFL-ARRFAVLAGPSIPIIGEGDKL 573 (706)
Q Consensus 495 i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~G~~v~~~~~~~~~g~g~~~ 573 (706)
+..+++.|.+ . +.|+||++|||++.. +.... ...++..|+ +.||.|+.+++++....
T Consensus 84 ~~~~~~~p~~---~---~~p~vv~lHGgg~~~--------~~~~~----~~~~~~~la~~~g~~vi~~D~r~~~~~---- 141 (326)
T 3d7r_A 84 MQVFRFNFRH---Q---IDKKILYIHGGFNAL--------QPSPF----HWRLLDKITLSTLYEVVLPIYPKTPEF---- 141 (326)
T ss_dssp EEEEEEESTT---C---CSSEEEEECCSTTTS--------CCCHH----HHHHHHHHHHHHCSEEEEECCCCTTTS----
T ss_pred EEEEEEeeCC---C---CCeEEEEECCCcccC--------CCCHH----HHHHHHHHHHHhCCEEEEEeCCCCCCC----
Confidence 6677888865 1 258999999986421 11011 112345566 46999999888753221
Q ss_pred CchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCc----eeEEEeccCCCCCCCC-------
Q 005240 574 PNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHL----FCCGIARSGSYNKTLT------- 642 (706)
Q Consensus 574 ~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~----~~a~v~~~~~~d~~~~------- 642 (706)
.....++|+.++++++.++ +|+++|+|+|+|+||++|+.++.+.|++ ++++|+.+|..+....
T Consensus 142 ----~~~~~~~d~~~~~~~l~~~--~~~~~i~l~G~S~GG~lAl~~a~~~~~~~~~~v~~lvl~~p~~~~~~~~~~~~~~ 215 (326)
T 3d7r_A 142 ----HIDDTFQAIQRVYDQLVSE--VGHQNVVVMGDGSGGALALSFVQSLLDNQQPLPNKLYLISPILDATLSNKDISDA 215 (326)
T ss_dssp ----CHHHHHHHHHHHHHHHHHH--HCGGGEEEEEETHHHHHHHHHHHHHHHTTCCCCSEEEEESCCCCTTCCCTTCCHH
T ss_pred ----CchHHHHHHHHHHHHHHhc--cCCCcEEEEEECHHHHHHHHHHHHHHhcCCCCCCeEEEECcccccCcCChhHHhh
Confidence 1345678999999999887 6889999999999999999999887766 9999999997653210
Q ss_pred ------------------------------------------Ccc---------c-hHHHHHHHHHhCCCcEEEEEeCCC
Q 005240 643 ------------------------------------------PFG---------F-QAERFFDALKGHGALSRLVLLPFE 670 (706)
Q Consensus 643 ------------------------------------------~~~---------~-~~~~~~~~l~~~~~~~~~~~~~~~ 670 (706)
|.. . +..++.++|...+.++++++||++
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~lii~G~~D~~~~~~~~~~~~l~~~~~~~~~~~~~g~ 295 (326)
T 3d7r_A 216 LIEQDAVLSQFGVNEIMKKWANGLPLTDKRISPINGTIEGLPPVYMFGGGREMTHPDMKLFEQMMLQHHQYIEFYDYPKM 295 (326)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHTTSCTTSTTTSGGGSCCTTCCCEEEEEETTSTTHHHHHHHHHHHHHTTCCEEEEEETTC
T ss_pred hcccCcccCHHHHHHHHHHhcCCCCCCCCeECcccCCcccCCCEEEEEeCcccchHHHHHHHHHHHHCCCcEEEEEeCCC
Confidence 000 0 112788899999999999999999
Q ss_pred CccCCC--cccHHHHHHHHHHHHHHHhc
Q 005240 671 HHVYAA--RENVMHVIWETDRWLQKYCL 696 (706)
Q Consensus 671 ~H~~~~--~~~~~~~~~~~~~f~~~~l~ 696 (706)
+|.+.. .....++.+.+.+||++++.
T Consensus 296 ~H~~~~~~~~~~~~~~~~i~~fl~~~l~ 323 (326)
T 3d7r_A 296 VHDFPIYPIRQSHKAIKQIAKSIDEDVT 323 (326)
T ss_dssp CTTGGGSSSHHHHHHHHHHHHHHTSCCC
T ss_pred cccccccCCHHHHHHHHHHHHHHHHHhh
Confidence 998864 24566888999999988774
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.57 E-value=3.9e-13 Score=154.53 Aligned_cols=207 Identities=13% Similarity=0.097 Sum_probs=132.6
Q ss_pred cccceeeC-CCCCeEEEEeeccccccccCCceeEEEEEcCCC-ceeecccCCCccccccccceEEecCCcEEEEEecCCC
Q 005240 32 KINFVSWS-PDGKRIAFSVRVDEEDNVSSCKLRVWIADAETG-EAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSR 109 (706)
Q Consensus 32 ~~~~~~~S-PDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g-~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~ 109 (706)
....++|| |||++|||+.+. .++...+||++|+++| +. +.. .+......+.|||||+.|+|......
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~-----~G~~~~~l~v~dl~~g~~~--l~~----~~~~~~~~~~WspDg~~l~y~~~d~~ 243 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDM-----SGNEVYTIEFKRISDPSQT--IAD----KVSGTNGEIVWGPDHTSLFYVTKDET 243 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEES-----SSSSCEEEEEEETTCTTCC--CCC----CEEEECSCCEECSSTTEEEEEEECTT
T ss_pred EEeeeEecCCCCCEEEEEEeC-----CCCceEEEEEEECCCCCEe--CCc----cccCceeeEEEecCCCEEEEEEECCC
Confidence 35679999 999999999863 1233467999999998 62 221 11112457899999999999854211
Q ss_pred CCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCC-C--ceecCC---CceEeeeeeC
Q 005240 110 RDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-T--AKDFGT---PAVYTAVEPS 183 (706)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g-~--~~~lt~---~~~~~~~~~S 183 (706)
. ...+||++++.+ + .+.+.. ......+.||
T Consensus 244 ~--------------------------------------------~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~S 279 (751)
T 2xe4_A 244 L--------------------------------------------RENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKA 279 (751)
T ss_dssp C--------------------------------------------CEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEEC
T ss_pred C--------------------------------------------CCCEEEEEECCCCchhcEEEEecCCCceEEEEEEC
Confidence 0 115899999944 3 233422 1345678999
Q ss_pred CCCcEEEEEeeccCcccccccccccceEEEEecCCC--ee--EEcccCCCCCCCCcccCccCCCCcceeeecC---CCce
Q 005240 184 PDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK--LV--RELCDLPPAEDIPVCYNSVREGMRSISWRAD---KPST 256 (706)
Q Consensus 184 pDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~--~~l~~~~~~~~~p~~~~~~~~g~~~~~~spd---g~~~ 256 (706)
|||++|++...... ..+|++++++++ +. +.|+.... ...|+++ |+.
T Consensus 280 pDg~~l~~~~~~~~----------~~~l~~~d~~~~~~~~~~~~l~~~~~----------------~~~~s~~~~~g~~- 332 (751)
T 2xe4_A 280 ADTNTLCIGSQSPE----------TAEVHLLDLRKGNAHNTLEIVRPREK----------------GVRYDVQMHGTSH- 332 (751)
T ss_dssp TTSSEEEEEEECSS----------CEEEEEEESSSCTTCCCEEESSCCCT----------------TCCEEEEEETTTE-
T ss_pred CCCCEEEEEecCCC----------CceEEEEECCCCCCCceeEEeecCCC----------------CceEEEeeeeCCE-
Confidence 99999999886532 468999999864 34 55554321 2256666 777
Q ss_pred EEEEEeccCCCCccccCccceeeeecCCCCCC-CCceE-EeecccccccceecCCCceEEEEeeccccceEEEEEcC
Q 005240 257 LYWVEAQDRGDANVEVSPRDIIYTQPAEPAEG-EKPEI-LHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCP 331 (706)
Q Consensus 257 l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~~~~-l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~ 331 (706)
|+|+.+.++. .+..|+.+++ ++ ++.+. |........-..|++++..|++.... ++..+|+++++
T Consensus 333 l~~~t~~~~a-------~~~~L~~~d~---~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~-~g~~~l~~~dl 398 (751)
T 2xe4_A 333 LVILTNEGGA-------VNHKLLIAPR---GQPSDWSHVLVDHSEDVFMESIAVRSNYLVVAGRR-AGLTRIWTMMA 398 (751)
T ss_dssp EEEEECTTTC-------TTCEEEEEET---TSTTCCCCEEECCCSSEEEEEEEECSSEEEEEEEE-TTEEEEEEEEC
T ss_pred EEEEeCCCCC-------CCcEEEEEcC---CCcccceeeEECCCCCcEEEEEEEECCEEEEEEEe-CCEEEEEEEec
Confidence 8888765411 1235888888 43 45455 54433322222344556677776544 36778999997
|
| >1jfr_A Lipase; serine hydrolase; 1.90A {Streptomyces exfoliatus} SCOP: c.69.1.16 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.4e-13 Score=137.07 Aligned_cols=188 Identities=15% Similarity=0.151 Sum_probs=133.3
Q ss_pred CceEEEEEEcc--CCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeE
Q 005240 480 LQKEMIKYQRK--DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFA 557 (706)
Q Consensus 480 ~~~~~~~~~~~--dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~ 557 (706)
...+.+.++.. ++. ..+.+++|.... .++.|+||++||.+.. ...+ ..++..|+++||.
T Consensus 23 ~~~~~~~~~~~~~~~~-~~~~l~~p~~~~---~~~~p~vv~~HG~~~~-----------~~~~----~~~~~~l~~~G~~ 83 (262)
T 1jfr_A 23 YATSQTSVSSLVASGF-GGGTIYYPTSTA---DGTFGAVVISPGFTAY-----------QSSI----AWLGPRLASQGFV 83 (262)
T ss_dssp SCEEEEEECTTTCSSS-CCEEEEEESCCT---TCCEEEEEEECCTTCC-----------GGGT----TTHHHHHHTTTCE
T ss_pred CCccceEecceeccCC-CceeEEecCCCC---CCCCCEEEEeCCcCCC-----------chhH----HHHHHHHHhCCCE
Confidence 34566666654 332 257788887521 2357999999996421 1111 2356778899999
Q ss_pred EEEcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHH----cCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEec
Q 005240 558 VLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVR----RGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIAR 633 (706)
Q Consensus 558 v~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~----~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~ 633 (706)
|+..+.+ |.|.. ......|+..+++++.+ ...++.++|+++|||+||++++.++.++|+ ++++|+.
T Consensus 84 v~~~d~~---g~g~~------~~~~~~d~~~~~~~l~~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~ 153 (262)
T 1jfr_A 84 VFTIDTN---TTLDQ------PDSRGRQLLSALDYLTQRSSVRTRVDATRLGVMGHSMGGGGSLEAAKSRTS-LKAAIPL 153 (262)
T ss_dssp EEEECCS---STTCC------HHHHHHHHHHHHHHHHHTSTTGGGEEEEEEEEEEETHHHHHHHHHHHHCTT-CSEEEEE
T ss_pred EEEeCCC---CCCCC------CchhHHHHHHHHHHHHhccccccccCcccEEEEEEChhHHHHHHHHhcCcc-ceEEEee
Confidence 9997775 34432 12345788899999988 344678899999999999999999999987 8999999
Q ss_pred cCCCCCCC-----CCcc------------ch-HHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHh
Q 005240 634 SGSYNKTL-----TPFG------------FQ-AERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYC 695 (706)
Q Consensus 634 ~~~~d~~~-----~~~~------------~~-~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~~~~l 695 (706)
+|...... .|.. -. ..++++.|. .+.+++++++++++|.+... ...++.+.+.+||++++
T Consensus 154 ~p~~~~~~~~~~~~P~l~i~G~~D~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~H~~~~~-~~~~~~~~i~~fl~~~l 231 (262)
T 1jfr_A 154 TGWNTDKTWPELRTPTLVVGADGDTVAPVATHSKPFYESLP-GSLDKAYLELRGASHFTPNT-SDTTIAKYSISWLKRFI 231 (262)
T ss_dssp SCCCSCCCCTTCCSCEEEEEETTCSSSCTTTTHHHHHHHSC-TTSCEEEEEETTCCTTGGGS-CCHHHHHHHHHHHHHHH
T ss_pred cccCccccccccCCCEEEEecCccccCCchhhHHHHHHHhh-cCCCceEEEeCCCCcCCccc-chHHHHHHHHHHHHHHh
Confidence 98754221 1210 12 557777773 35688999999999998643 34688999999999998
Q ss_pred ccC
Q 005240 696 LSN 698 (706)
Q Consensus 696 ~~~ 698 (706)
...
T Consensus 232 ~~~ 234 (262)
T 1jfr_A 232 DSD 234 (262)
T ss_dssp SCC
T ss_pred cCc
Confidence 754
|
| >4h0c_A Phospholipase/carboxylesterase; PSI-biology, midwest center for structural genomics, MCSG, hydrolase; HET: CIT; 1.62A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.8e-14 Score=137.99 Aligned_cols=159 Identities=13% Similarity=0.061 Sum_probs=108.1
Q ss_pred ceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCCCCc-----hhhHHHHHHHHH
Q 005240 513 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPN-----DRFVEQLVSSAE 587 (706)
Q Consensus 513 ~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~-----~~~~~~~~~D~~ 587 (706)
.|+||++||-+.. ...+ ..+++.|...|+.|++++..+...|+..+.. ....+.....+.
T Consensus 22 ~~~Vv~lHG~G~~-----------~~~~----~~l~~~l~~~~~~v~~P~~~g~~w~~~~~~~~~~~~~~~~~~~~~~i~ 86 (210)
T 4h0c_A 22 KKAVVMLHGRGGT-----------AADI----ISLQKVLKLDEMAIYAPQATNNSWYPYSFMAPVQQNQPALDSALALVG 86 (210)
T ss_dssp SEEEEEECCTTCC-----------HHHH----HGGGGTSSCTTEEEEEECCGGGCSSSSCTTSCGGGGTTHHHHHHHHHH
T ss_pred CcEEEEEeCCCCC-----------HHHH----HHHHHHhCCCCeEEEeecCCCCCccccccCCCcccchHHHHHHHHHHH
Confidence 5899999994210 0011 1123445568999999887665555443332 122333444455
Q ss_pred HHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCCCCC------------CCcc----------
Q 005240 588 AAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTL------------TPFG---------- 645 (706)
Q Consensus 588 ~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d~~~------------~~~~---------- 645 (706)
.+++.+.+. .+|++||+++|+|+||++|+.++.++|++|+++++++|...... +|..
T Consensus 87 ~~~~~~~~~-~i~~~ri~l~G~S~Gg~~a~~~a~~~p~~~~~vv~~sg~l~~~~~~~~~~~~~~~~~Pvl~~hG~~D~~v 165 (210)
T 4h0c_A 87 EVVAEIEAQ-GIPAEQIYFAGFSQGACLTLEYTTRNARKYGGIIAFTGGLIGQELAIGNYKGDFKQTPVFISTGNPDPHV 165 (210)
T ss_dssp HHHHHHHHT-TCCGGGEEEEEETHHHHHHHHHHHHTBSCCSEEEEETCCCCSSSCCGGGCCBCCTTCEEEEEEEESCTTS
T ss_pred HHHHHHHHh-CCChhhEEEEEcCCCcchHHHHHHhCcccCCEEEEecCCCCChhhhhhhhhhhccCCceEEEecCCCCcc
Confidence 555555444 48999999999999999999999999999999999988542111 1211
Q ss_pred --chHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 005240 646 --FQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQ 692 (706)
Q Consensus 646 --~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~~ 692 (706)
-..++++++|++.|.++++++|||++|.++. +..+.+.+||.
T Consensus 166 p~~~~~~~~~~L~~~g~~v~~~~ypg~gH~i~~-----~el~~i~~wL~ 209 (210)
T 4h0c_A 166 PVSRVQESVTILEDMNAAVSQVVYPGRPHTISG-----DEIQLVNNTIL 209 (210)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEEEETCCSSCCH-----HHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHCCCCeEEEEECCCCCCcCH-----HHHHHHHHHHc
Confidence 1234899999999999999999999998863 34566666664
|
| >4fhz_A Phospholipase/carboxylesterase; alpha/beta hydrolase superfamily, central beta-STR sheet, flanked alpha helices, hydrolase; 2.01A {Rhodobacter sphaeroides} PDB: 4ftw_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=6e-14 Score=140.62 Aligned_cols=184 Identities=13% Similarity=-0.008 Sum_probs=124.0
Q ss_pred CeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHH--CCeEEEEcCCC---Cc
Q 005240 492 GVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA--RRFAVLAGPSI---PI 566 (706)
Q Consensus 492 g~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~G~~v~~~~~~---~~ 566 (706)
+.....+...|+. +++ +.|+||++||.+.. ...+ ..+++.|+. .++.++.++.. ..
T Consensus 49 ~~~~l~y~~~p~~--~~~--~~plVI~LHG~G~~-----------~~~~----~~~~~~l~~~~~~~~~v~P~Ap~~~~~ 109 (285)
T 4fhz_A 49 MTRKLTFGRRGAA--PGE--ATSLVVFLHGYGAD-----------GADL----LGLAEPLAPHLPGTAFVAPDAPEPCRA 109 (285)
T ss_dssp CCCCCCEEEEESC--TTC--CSEEEEEECCTTBC-----------HHHH----HTTHHHHGGGSTTEEEEEECCSEECTT
T ss_pred ccccceeecCCCC--CCC--CCcEEEEEcCCCCC-----------HHHH----HHHHHHHHHhCCCeEEEecCCCccccc
Confidence 3344445566654 233 58999999994310 0111 123455654 48888875431 22
Q ss_pred CCCCCCCCch------------hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEecc
Q 005240 567 IGEGDKLPND------------RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARS 634 (706)
Q Consensus 567 ~g~g~~~~~~------------~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~ 634 (706)
.|.|..|... ........++.+.++.+.++.-+|++||+|+|+|+||++|+.++.++|++|+++|+++
T Consensus 110 ~~~G~~Wfd~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~id~~ri~l~GfS~Gg~~a~~~a~~~p~~~a~vv~~s 189 (285)
T 4fhz_A 110 NGFGFQWFPIPWLDGSSETAAAEGMAAAARDLDAFLDERLAEEGLPPEALALVGFSQGTMMALHVAPRRAEEIAGIVGFS 189 (285)
T ss_dssp SSSCEESSCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEETHHHHHHHHHHHHSSSCCSEEEEES
T ss_pred CCCcccccccccccCcccchhhHHHHHHHHHHHHHHHHHHHHhCCCccceEEEEeCHHHHHHHHHHHhCcccCceEEEee
Confidence 2344444221 1122345677777888877767999999999999999999999999999999999998
Q ss_pred CCCCCC---------CCCcc-----------c-hHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 005240 635 GSYNKT---------LTPFG-----------F-QAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQK 693 (706)
Q Consensus 635 ~~~d~~---------~~~~~-----------~-~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~~~ 693 (706)
|..... .+|.. + ..++++++|++.|.++++++|||.+|.+. .+.++.+.+||++
T Consensus 190 G~l~~~~~~~~~~~~~~Pvl~~hG~~D~~Vp~~~~~~~~~~L~~~g~~~~~~~y~g~gH~i~-----~~~l~~~~~fL~~ 264 (285)
T 4fhz_A 190 GRLLAPERLAEEARSKPPVLLVHGDADPVVPFADMSLAGEALAEAGFTTYGHVMKGTGHGIA-----PDGLSVALAFLKE 264 (285)
T ss_dssp CCCSCHHHHHHHCCCCCCEEEEEETTCSSSCTHHHHHHHHHHHHTTCCEEEEEETTCCSSCC-----HHHHHHHHHHHHH
T ss_pred cCccCchhhhhhhhhcCcccceeeCCCCCcCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC-----HHHHHHHHHHHHH
Confidence 854211 11211 1 34589999999999999999999999875 2567889999999
Q ss_pred HhccCC
Q 005240 694 YCLSNT 699 (706)
Q Consensus 694 ~l~~~~ 699 (706)
+|....
T Consensus 265 ~Lpd~~ 270 (285)
T 4fhz_A 265 RLPDAC 270 (285)
T ss_dssp HCC---
T ss_pred HCcCCc
Confidence 986433
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.4e-12 Score=135.39 Aligned_cols=219 Identities=12% Similarity=0.014 Sum_probs=126.0
Q ss_pred ceEEEEcc-CCCc-eec----CCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEE-cccCC
Q 005240 157 AQLVLGSL-DGTA-KDF----GTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRE-LCDLP 228 (706)
Q Consensus 157 ~~l~~~~l-~g~~-~~l----t~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-l~~~~ 228 (706)
+.|.++|+ +++. ..+ ... ..+..++|||||++|+..+.+ ..|.+||+.+++... +..+.
T Consensus 103 g~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d-------------~~i~iwd~~~~~~~~~~~~h~ 169 (344)
T 4gqb_B 103 GAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKD-------------ICIKVWDLAQQVVLSSYRAHA 169 (344)
T ss_dssp SEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETT-------------SCEEEEETTTTEEEEEECCCS
T ss_pred CEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCC-------------CeEEEEECCCCcEEEEEcCcC
Confidence 56777788 4532 221 122 578899999999999866543 379999998765433 32221
Q ss_pred CCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCce-EEe--ecccccccce
Q 005240 229 PAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPE-ILH--KLDLRFRSVS 305 (706)
Q Consensus 229 ~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~-~l~--~~~~~~~~~~ 305 (706)
..+..+.|+|++.. ++.....+ ..|.+||+ .+++.. .+. .....+..+.
T Consensus 170 -------------~~V~~~~~~~~~~~-~l~s~s~D-----------~~v~iwd~---~~~~~~~~~~~~~~~~~~~~~~ 221 (344)
T 4gqb_B 170 -------------AQVTCVAASPHKDS-VFLSCSED-----------NRILLWDT---RCPKPASQIGCSAPGYLPTSLA 221 (344)
T ss_dssp -------------SCEEEEEECSSCTT-EEEEEETT-----------SCEEEEET---TSSSCEEECC----CCCEEEEE
T ss_pred -------------CceEEEEecCCCCC-ceeeeccc-----------cccccccc---cccceeeeeecceeeccceeee
Confidence 22457899999987 43332211 24788888 555543 332 2234567889
Q ss_pred ecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEec
Q 005240 306 WCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNG 385 (706)
Q Consensus 306 wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~ 385 (706)
|+|++..++..... ...|.++|+.+++ ....+...... ...+.|+|||..++++...
T Consensus 222 ~~p~~~~~l~sg~~---dg~v~~wd~~~~~--~~~~~~~h~~~------v~~v~fsp~g~~~lasgs~------------ 278 (344)
T 4gqb_B 222 WHPQQSEVFVFGDE---NGTVSLVDTKSTS--CVLSSAVHSQC------VTGLVFSPHSVPFLASLSE------------ 278 (344)
T ss_dssp ECSSCTTEEEEEET---TSEEEEEESCC----CCEEEECCSSC------EEEEEECSSSSCCEEEEET------------
T ss_pred ecCCCCcceEEecc---CCcEEEEECCCCc--EEEEEcCCCCC------EEEEEEccCCCeEEEEEeC------------
Confidence 99976544433222 2346777887742 22222222111 2237789999654444321
Q ss_pred CCCCCCCCCCceeeeecCCCceeeeecccchhhhhhhhhhccCCCceecccCCCEEEEEEecCCCCcEEEEEECCCC
Q 005240 386 RGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLK 462 (706)
Q Consensus 386 ~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~p~~v~~~~~~~~ 462 (706)
+ ..+..+|+.+++..++... ......++||||++.++.+.+.+. .|..|++.+.
T Consensus 279 D--------~~i~vwd~~~~~~~~~~~H------------~~~V~~v~~sp~~~~llas~s~D~---~v~~w~v~~~ 332 (344)
T 4gqb_B 279 D--------CSLAVLDSSLSELFRSQAH------------RDFVRDATWSPLNHSLLTTVGWDH---QVVHHVVPTE 332 (344)
T ss_dssp T--------SCEEEECTTCCEEEEECCC------------SSCEEEEEECSSSTTEEEEEETTS---CEEEEECCC-
T ss_pred C--------CeEEEEECCCCcEEEEcCC------------CCCEEEEEEeCCCCeEEEEEcCCC---eEEEEECCCC
Confidence 1 1356678777765443211 112235789999998887766442 4778887553
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.7e-12 Score=139.30 Aligned_cols=302 Identities=6% Similarity=-0.039 Sum_probs=180.4
Q ss_pred cccee---eCCCCCeEEEEeeccccc------cccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEE
Q 005240 33 INFVS---WSPDGKRIAFSVRVDEED------NVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIF 103 (706)
Q Consensus 33 ~~~~~---~SPDG~~laf~~~~~~~~------~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~ 103 (706)
....+ |+|+++.++.+....... ...++...||+++.+++..+.+...... ..+..+.|+|+++ +++
T Consensus 63 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~---~~~~~~~~s~~~~-~~~ 138 (433)
T 3bws_A 63 LVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKTG---FQPKSVRFIDNTR-LAI 138 (433)
T ss_dssp EEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEECS---SCBCCCEESSSSE-EEE
T ss_pred cEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEcCC---CCceEEEEeCCCe-EEE
Confidence 34455 999998887665421100 0112234889998877644443221111 1255789999554 555
Q ss_pred EecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCCceecCC------C-c
Q 005240 104 TIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGT------P-A 175 (706)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~~~lt~------~-~ 175 (706)
... ....|+++++ +|+..+... . .
T Consensus 139 ~~~------------------------------------------------~~~~i~~~d~~~g~~~~~~~~~~~~~~~~ 170 (433)
T 3bws_A 139 PLL------------------------------------------------EDEGMDVLDINSGQTVRLSPPEKYKKKLG 170 (433)
T ss_dssp EBT------------------------------------------------TSSSEEEEETTTCCEEEECCCHHHHTTCC
T ss_pred EeC------------------------------------------------CCCeEEEEECCCCeEeeecCcccccccCC
Confidence 431 1146888898 455544322 2 4
Q ss_pred eEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeE-EcccCCCCCCCCcccCccCCCCcceeeecCCC
Q 005240 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR-ELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (706)
Q Consensus 176 ~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~ 254 (706)
.+..++|+|+|+.++..... ..|.+|++++++.. .+.... ..+..++|+||++
T Consensus 171 ~v~~~~~~~~~~~~~s~~~d-------------~~v~~~d~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~ 224 (433)
T 3bws_A 171 FVETISIPEHNELWVSQMQA-------------NAVHVFDLKTLAYKATVDLTG-------------KWSKILLYDPIRD 224 (433)
T ss_dssp EEEEEEEGGGTEEEEEEGGG-------------TEEEEEETTTCCEEEEEECSS-------------SSEEEEEEETTTT
T ss_pred ceeEEEEcCCCEEEEEECCC-------------CEEEEEECCCceEEEEEcCCC-------------CCeeEEEEcCCCC
Confidence 67889999998766544322 47999999865443 333111 1234789999998
Q ss_pred ceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccc----cceEEEEEc
Q 005240 255 STLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKT----SQTRTWLVC 330 (706)
Q Consensus 255 ~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~----~~~~l~~~d 330 (706)
. |++.... ...|+++|+ .+++..........+..+.|+|||+.|++...... ....|+++|
T Consensus 225 ~-l~~~~~~-----------~~~i~~~d~---~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d 289 (433)
T 3bws_A 225 L-VYCSNWI-----------SEDISVIDR---KTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYS 289 (433)
T ss_dssp E-EEEEETT-----------TTEEEEEET---TTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEE
T ss_pred E-EEEEecC-----------CCcEEEEEC---CCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEE
Confidence 6 5544211 125888988 55555444444556788999999998887653221 245799999
Q ss_pred CCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeee
Q 005240 331 PGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERI 410 (706)
Q Consensus 331 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l 410 (706)
+.++ +......... ....+.|+|+|+++++.... ...+..+|+.+++....
T Consensus 290 ~~~~--~~~~~~~~~~-------~~~~~~~~~~g~~l~~~~~~--------------------~~~v~v~d~~~~~~~~~ 340 (433)
T 3bws_A 290 MDKE--KLIDTIGPPG-------NKRHIVSGNTENKIYVSDMC--------------------CSKIEVYDLKEKKVQKS 340 (433)
T ss_dssp TTTT--EEEEEEEEEE-------CEEEEEECSSTTEEEEEETT--------------------TTEEEEEETTTTEEEEE
T ss_pred CCCC--cEEeeccCCC-------CcceEEECCCCCEEEEEecC--------------------CCEEEEEECCCCcEEEE
Confidence 8874 2333221110 11236789999988776421 12466788887766554
Q ss_pred ecccchhhhhhhhhhccCCCceecccCCCEEEEEEecCCCC-----------cEEEEEECCCCceeEee
Q 005240 411 WESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEI-----------TQYHILSWPLKKSSQIT 468 (706)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~p-----------~~v~~~~~~~~~~~~lt 468 (706)
..... ....+.|+|||+.++........+ ..|++||+.+++.....
T Consensus 341 ~~~~~------------~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~ 397 (433)
T 3bws_A 341 IPVFD------------KPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFW 397 (433)
T ss_dssp EECSS------------SEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEE
T ss_pred ecCCC------------CCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEe
Confidence 43221 122578999998777665443322 48999998887655443
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.55 E-value=3.5e-12 Score=131.45 Aligned_cols=251 Identities=9% Similarity=0.013 Sum_probs=159.9
Q ss_pred cceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCcc
Q 005240 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~ 84 (706)
..|.|+++...........+........+..+.|+|||+.|+.... ...|.++++++++...+......
T Consensus 72 g~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------d~~i~~~d~~~~~~~~~~~~~~~- 140 (337)
T 1gxr_A 72 GCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGE----------ASTLSIWDLAAPTPRIKAELTSS- 140 (337)
T ss_dssp SEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEES----------SSEEEEEECCCC--EEEEEEECS-
T ss_pred CeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcC----------CCcEEEEECCCCCcceeeecccC-
Confidence 3578888876222222233321233446889999999999988642 25788888887763322111111
Q ss_pred ccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc
Q 005240 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (706)
Q Consensus 85 ~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l 164 (706)
...+..+.|+||++.|+.... .+.|.++++
T Consensus 141 -~~~i~~~~~~~~~~~l~~~~~-------------------------------------------------dg~v~~~d~ 170 (337)
T 1gxr_A 141 -APACYALAISPDSKVCFSCCS-------------------------------------------------DGNIAVWDL 170 (337)
T ss_dssp -SSCEEEEEECTTSSEEEEEET-------------------------------------------------TSCEEEEET
T ss_pred -CCceEEEEECCCCCEEEEEeC-------------------------------------------------CCcEEEEeC
Confidence 112678899999998887642 156788888
Q ss_pred -CCC-ceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccC
Q 005240 165 -DGT-AKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVR 241 (706)
Q Consensus 165 -~g~-~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~ 241 (706)
+++ ...+... ..+..++|+|||+.|+..... ..|.+|++.+++........
T Consensus 171 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-------------g~i~~~d~~~~~~~~~~~~~------------- 224 (337)
T 1gxr_A 171 HNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLD-------------NTVRSWDLREGRQLQQHDFT------------- 224 (337)
T ss_dssp TTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT-------------SEEEEEETTTTEEEEEEECS-------------
T ss_pred CCCceeeeeecccCceEEEEECCCCCEEEEEecC-------------CcEEEEECCCCceEeeecCC-------------
Confidence 443 3444433 678899999999999866543 37999999876654433321
Q ss_pred CCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccc
Q 005240 242 EGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKT 321 (706)
Q Consensus 242 ~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~ 321 (706)
..+..+.|+||++. |+... . .+.|+++|+ .+++...+......+..+.|+||++.|+..+.
T Consensus 225 ~~v~~~~~s~~~~~-l~~~~-~-----------~~~i~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--- 285 (337)
T 1gxr_A 225 SQIFSLGYCPTGEW-LAVGM-E-----------SSNVEVLHV---NKPDKYQLHLHESCVLSLKFAYCGKWFVSTGK--- 285 (337)
T ss_dssp SCEEEEEECTTSSE-EEEEE-T-----------TSCEEEEET---TSSCEEEECCCSSCEEEEEECTTSSEEEEEET---
T ss_pred CceEEEEECCCCCE-EEEEc-C-----------CCcEEEEEC---CCCCeEEEcCCccceeEEEECCCCCEEEEecC---
Confidence 12447899999986 55332 1 124788888 56666666667788899999999998887652
Q ss_pred cceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEee
Q 005240 322 SQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 322 ~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 371 (706)
...|.++++.+++ ........ .....+.|+|||++|+...
T Consensus 286 -dg~i~~~~~~~~~--~~~~~~~~-------~~v~~~~~s~~~~~l~~~~ 325 (337)
T 1gxr_A 286 -DNLLNAWRTPYGA--SIFQSKES-------SSVLSCDISVDDKYIVTGS 325 (337)
T ss_dssp -TSEEEEEETTTCC--EEEEEECS-------SCEEEEEECTTSCEEEEEE
T ss_pred -CCcEEEEECCCCe--EEEEecCC-------CcEEEEEECCCCCEEEEec
Confidence 2357777877742 22221111 0122467899999887664
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=2.7e-12 Score=133.55 Aligned_cols=256 Identities=10% Similarity=-0.026 Sum_probs=158.7
Q ss_pred ceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccc
Q 005240 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (706)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 85 (706)
.|++.|+.. ++..... +.+.....+.|||||++|+++. .....|+++|+++++............
T Consensus 70 ~v~~~d~~~----~~~~~~~--~~~~~~~~~~~s~dg~~l~v~~---------~~~~~v~~~d~~~~~~~~~~~~~~~~~ 134 (353)
T 3vgz_A 70 VVYRLDPVT----LEVTQAI--HNDLKPFGATINNTTQTLWFGN---------TVNSAVTAIDAKTGEVKGRLVLDDRKR 134 (353)
T ss_dssp EEEEECTTT----CCEEEEE--EESSCCCSEEEETTTTEEEEEE---------TTTTEEEEEETTTCCEEEEEESCCCCC
T ss_pred cEEEEcCCC----CeEEEEE--ecCCCcceEEECCCCCEEEEEe---------cCCCEEEEEeCCCCeeEEEEecCCCcc
Confidence 577777765 6554433 2344577899999999987764 334689999999887654332221100
Q ss_pred -----cccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEE
Q 005240 86 -----NAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLV 160 (706)
Q Consensus 86 -----~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~ 160 (706)
...+..+.|+|||++|++.... ....|+
T Consensus 135 ~~~~~~~~~~~~~~s~dg~~l~~~~~~-----------------------------------------------~~~~i~ 167 (353)
T 3vgz_A 135 TEEVRPLQPRELVADDATNTVYISGIG-----------------------------------------------KESVIW 167 (353)
T ss_dssp CSSCCCCEEEEEEEETTTTEEEEEEES-----------------------------------------------SSCEEE
T ss_pred ccccCCCCCceEEECCCCCEEEEEecC-----------------------------------------------CCceEE
Confidence 0013568999999988876421 115799
Q ss_pred EEcc-CCCce-ecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCccc
Q 005240 161 LGSL-DGTAK-DFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCY 237 (706)
Q Consensus 161 ~~~l-~g~~~-~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~ 237 (706)
++|+ +++.. .+... .....++|+|||++|++.... ..+++||+.+++........... +
T Consensus 168 ~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~-------------~~i~~~d~~~~~~~~~~~~~~~~--~--- 229 (353)
T 3vgz_A 168 VVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNAD-------------GELITIDTADNKILSRKKLLDDG--K--- 229 (353)
T ss_dssp EEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTT-------------SEEEEEETTTTEEEEEEECCCSS--S---
T ss_pred EEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCC-------------CeEEEEECCCCeEEEEEEcCCCC--C---
Confidence 9998 55443 34422 446789999999999876542 37889999877655433321110 0
Q ss_pred CccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEe
Q 005240 238 NSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNET 317 (706)
Q Consensus 238 ~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~ 317 (706)
......+.|+|||+. |++.. . ....|+++|. .+++......... ...+.|+|||+.+++..
T Consensus 230 ---~~~~~~~~~s~dg~~-l~~~~-~----------~~~~v~~~d~---~~~~~~~~~~~~~-~~~~~~s~dg~~l~v~~ 290 (353)
T 3vgz_A 230 ---EHFFINISLDTARQR-AFITD-S----------KAAEVLVVDT---RNGNILAKVAAPE-SLAVLFNPARNEAYVTH 290 (353)
T ss_dssp ---CCCEEEEEEETTTTE-EEEEE-S----------SSSEEEEEET---TTCCEEEEEECSS-CCCEEEETTTTEEEEEE
T ss_pred ---CcccceEEECCCCCE-EEEEe-C----------CCCEEEEEEC---CCCcEEEEEEcCC-CceEEECCCCCEEEEEE
Confidence 011235799999997 65442 1 1235888888 5666544333322 35689999999877754
Q ss_pred eccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEeee
Q 005240 318 WYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIK 372 (706)
Q Consensus 318 ~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 372 (706)
. ....|+++|+.++ +......... ....+.|+|||++|++...
T Consensus 291 ~---~~~~v~~~d~~~~--~~~~~~~~~~-------~~~~~~~s~dg~~l~v~~~ 333 (353)
T 3vgz_A 291 R---QAGKVSVIDAKSY--KVVKTFDTPT-------HPNSLALSADGKTLYVSVK 333 (353)
T ss_dssp T---TTTEEEEEETTTT--EEEEEEECCS-------EEEEEEECTTSCEEEEEEE
T ss_pred C---CCCeEEEEECCCC--eEEEEEecCC-------CCCeEEEcCCCCEEEEEEc
Confidence 2 2246889998874 3332222110 1123678999998888753
|
| >3d0k_A Putative poly(3-hydroxybutyrate) depolymerase LPQ; alpha-beta-alpha sandwich, structural genomics, PSI-2; 1.83A {Bordetella parapertussis 12822} | Back alignment and structure |
|---|
Probab=99.54 E-value=8.3e-14 Score=142.20 Aligned_cols=190 Identities=17% Similarity=0.170 Sum_probs=126.9
Q ss_pred eEEEEEE---ccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEE
Q 005240 482 KEMIKYQ---RKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAV 558 (706)
Q Consensus 482 ~~~~~~~---~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v 558 (706)
...++|. ..++..+.+++|.|++..+ +.|+||++||++... ..+ ...+...++++||.|
T Consensus 24 ~~~~~~~~~~~~~~~~l~~~~~~P~~~~~----~~p~vv~lHG~~~~~-----------~~~---~~~~~~~l~~~g~~v 85 (304)
T 3d0k_A 24 RNAIPYLDDDRNADRPFTLNTYRPYGYTP----DRPVVVVQHGVLRNG-----------ADY---RDFWIPAADRHKLLI 85 (304)
T ss_dssp EEEEEECC---CTTCCEEEEEEECTTCCT----TSCEEEEECCTTCCH-----------HHH---HHHTHHHHHHHTCEE
T ss_pred CceEEecccCCCCCceEEEEEEeCCCCCC----CCcEEEEeCCCCCCH-----------HHH---HHHHHHHHHHCCcEE
Confidence 4456666 5688899999999986432 369999999975310 011 012356677899999
Q ss_pred EEcCCCCcC---------CC--CCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCC-c
Q 005240 559 LAGPSIPII---------GE--GDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH-L 626 (706)
Q Consensus 559 ~~~~~~~~~---------g~--g~~~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~-~ 626 (706)
+.+++++.. |+ |.+..........+.|+.++++++.++..+|++||+|+|||+||++++.++.++|+ +
T Consensus 86 ~~~d~~~~~~p~~~~~~~g~~~g~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~l~G~S~GG~~a~~~a~~~p~~~ 165 (304)
T 3d0k_A 86 VAPTFSDEIWPGVESYNNGRAFTAAGNPRHVDGWTYALVARVLANIRAAEIADCEQVYLFGHSAGGQFVHRLMSSQPHAP 165 (304)
T ss_dssp EEEECCTTTSCHHHHTTTTTCBCTTSCBCCGGGSTTHHHHHHHHHHHHTTSCCCSSEEEEEETHHHHHHHHHHHHSCSTT
T ss_pred EEeCCccccCCCccccccCccccccCCCCcccchHHHHHHHHHHHHHhccCCCCCcEEEEEeChHHHHHHHHHHHCCCCc
Confidence 998876320 22 22211111112234678889999988777899999999999999999999999985 7
Q ss_pred eeEEEecc-CCCCCCC------------------------CCcc--------c---------------------hHHHHH
Q 005240 627 FCCGIARS-GSYNKTL------------------------TPFG--------F---------------------QAERFF 652 (706)
Q Consensus 627 ~~a~v~~~-~~~d~~~------------------------~~~~--------~---------------------~~~~~~ 652 (706)
++++|+.. |.++... .|.. . ...+++
T Consensus 166 ~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~li~~G~~D~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 245 (304)
T 3d0k_A 166 FHAVTAANPGWYTLPTFEHRFPEGLDGVGLTEDHLARLLAYPMTILAGDQDIATDDPNLPSEPAALRQGPHRYARARHYY 245 (304)
T ss_dssp CSEEEEESCSSCCCSSTTSBTTTSSBTTTCCHHHHHHHHHSCCEEEEETTCCCC--CCSCCSHHHHTTCSSHHHHHHHHH
T ss_pred eEEEEEecCcccccCCccccCccccCCCCCCHHHHHhhhcCCEEEEEeCCCCCccccccccChhhhccCccHHHHHHHHH
Confidence 88877554 5432110 0100 0 012456
Q ss_pred HHHH----hCCCc--EEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHh
Q 005240 653 DALK----GHGAL--SRLVLLPFEHHVYAARENVMHVIWETDRWLQKYC 695 (706)
Q Consensus 653 ~~l~----~~~~~--~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~~~~l 695 (706)
++++ +.+++ +++++|||++|.+. .....+.+||....
T Consensus 246 ~~l~~~a~~~g~~~~~~~~~~pg~gH~~~------~~~~~~~~~~~~~~ 288 (304)
T 3d0k_A 246 EAGQRAAAQRGLPFGWQLQVVPGIGHDGQ------AMSQVCASLWFDGR 288 (304)
T ss_dssp HHHHHHHHHHTCCCCCEEEEETTCCSCHH------HHHHHHHHHHHTSS
T ss_pred HHHHHHHHhcCCCcceEEEEeCCCCCchH------HHHHHHHHHHhhhh
Confidence 6665 66777 99999999999873 45677888887644
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.54 E-value=8.5e-13 Score=142.08 Aligned_cols=303 Identities=10% Similarity=0.087 Sum_probs=167.7
Q ss_pred CcccceeeCC-CCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEec-CCcEEEEEecCC
Q 005240 31 AKINFVSWSP-DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVN-NSTLLIFTIPSS 108 (706)
Q Consensus 31 ~~~~~~~~SP-DG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSp-Dg~~l~~~~~~~ 108 (706)
..+..++||| +++.||.... + ..|.++|+++++...+....++ ...+..+.|+| |+++|+..+.+
T Consensus 120 ~~V~~l~~~P~~~~~lasGs~--------d--g~i~lWd~~~~~~~~~~~~~gH--~~~V~~l~f~p~~~~~l~s~s~D- 186 (435)
T 4e54_B 120 RRATSLAWHPTHPSTVAVGSK--------G--GDIMLWNFGIKDKPTFIKGIGA--GGSITGLKFNPLNTNQFYASSME- 186 (435)
T ss_dssp SCEEEEEECSSCTTCEEEEET--------T--SCEEEECSSCCSCCEEECCCSS--SCCCCEEEECSSCTTEEEEECSS-
T ss_pred CCEEEEEEeCCCCCEEEEEeC--------C--CEEEEEECCCCCceeEEEccCC--CCCEEEEEEeCCCCCEEEEEeCC-
Confidence 3588899999 5566766532 3 4677778877664443322111 12378999998 78877765321
Q ss_pred CCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCC-CceecCCC----ceEeeeeeC
Q 005240 109 RRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TAKDFGTP----AVYTAVEPS 183 (706)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g-~~~~lt~~----~~~~~~~~S 183 (706)
+.|.++|+.+ ..+.+... ..+..++|+
T Consensus 187 ------------------------------------------------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (435)
T 4e54_B 187 ------------------------------------------------GTTRLQDFKGNILRVFASSDTINIWFCSLDVS 218 (435)
T ss_dssp ------------------------------------------------SCEEEEETTSCEEEEEECCSSCSCCCCCEEEE
T ss_pred ------------------------------------------------CEEEEeeccCCceeEEeccCCCCccEEEEEEC
Confidence 4566678855 33333222 245678999
Q ss_pred CCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEec
Q 005240 184 PDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQ 263 (706)
Q Consensus 184 pDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~ 263 (706)
|||+.|+..... ..|.+||++++.+..+..+. ..+..+.|+|+++. ++.....
T Consensus 219 ~~~~~l~~g~~d-------------g~i~~wd~~~~~~~~~~~h~-------------~~v~~v~~~p~~~~-~~~s~s~ 271 (435)
T 4e54_B 219 ASSRMVVTGDNV-------------GNVILLNMDGKELWNLRMHK-------------KKVTHVALNPCCDW-FLATASV 271 (435)
T ss_dssp TTTTEEEEECSS-------------SBEEEEESSSCBCCCSBCCS-------------SCEEEEEECTTCSS-EEEEEET
T ss_pred CCCCEEEEEeCC-------------CcEeeeccCcceeEEEeccc-------------ceEEeeeecCCCce-EEEEecC
Confidence 999998765543 37999999877655443221 22457899999987 4433222
Q ss_pred cCCCCccccCccceeeeecCCCCCCCC-ceEE---eecccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCce
Q 005240 264 DRGDANVEVSPRDIIYTQPAEPAEGEK-PEIL---HKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPR 339 (706)
Q Consensus 264 ~~~~~~~~~~~~~~l~~~d~~~~~~~~-~~~l---~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~ 339 (706)
+ ..|.+||+ ...+ ...+ ..+...+..+.|+|||+.|+..+.+ + .|.++|+.+++ .+.
T Consensus 272 d-----------~~v~iwd~---~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D--~--~i~iwd~~~~~-~~~ 332 (435)
T 4e54_B 272 D-----------QTVKIWDL---RQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQK--S--EIRVYSASQWD-CPL 332 (435)
T ss_dssp T-----------SBCCEEET---TTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESS--S--CEEEEESSSSS-SEE
T ss_pred c-----------ceeeEEec---ccccccceEEEeeeccccccceeECCCCCeeEEEcCC--C--EEEEEECCCCc-cce
Confidence 1 23667777 3222 2222 2345678889999999998876522 2 35666666642 222
Q ss_pred eeecCcccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeeecccchhhh
Q 005240 340 VLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYF 419 (706)
Q Consensus 340 ~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~ 419 (706)
.+...... .......+...|+|++..++.....+ +..+... + .+...|..+|..+|+..........
T Consensus 333 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d---~~~~~~~--~----~~~~~i~iwd~~~g~~~~~l~~~~~--- 399 (435)
T 4e54_B 333 GLIPHPHR-HFQHLTPIKAAWHPRYNLIVVGRYPD---PNFKSCT--P----YELRTIDVFDGNSGKMMCQLYDPES--- 399 (435)
T ss_dssp EECCCCCC-CCSSSCCCBCEECSSSSCEEEECCCC---TTSCCSS--T----TCCCCEEEECSSSCCEEEEECCSSC---
T ss_pred EEeccccc-ccccceeEEEEEcCCCCEEEEEEcCC---CCeEEEE--e----cCCCEEEEEECCCCcEEEEEeCCCC---
Confidence 22111100 00001123356788888776654221 1111100 0 1122466678877765433222110
Q ss_pred hhhhhhccCCCc-eecccCCCEEEEEEecCCCCcEEEEEECCCCcee
Q 005240 420 ETAVALVFGQGE-EDINLNQLKILTSKESKTEITQYHILSWPLKKSS 465 (706)
Q Consensus 420 ~~~~~~~~~~~~-~~~s~Dg~~l~~~~~~~~~p~~v~~~~~~~~~~~ 465 (706)
..... ..|||||+.|+. .++ ..|.+|++++++.+
T Consensus 400 -------~~v~s~~~fspdg~~las-g~d----~~i~iW~~~~gk~r 434 (435)
T 4e54_B 400 -------SGISSLNEFNPMGDTLAS-AMG----YHILIWSQQEARTR 434 (435)
T ss_dssp -------CCCCCEEEECTTSSCEEE-ECS----SEEEECCCC-----
T ss_pred -------CcEEEEEEECCCCCEEEE-EcC----CcEEEEECCcCeee
Confidence 11122 369999987663 333 25999999888754
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.3e-12 Score=131.41 Aligned_cols=244 Identities=13% Similarity=0.075 Sum_probs=153.3
Q ss_pred ceeEeecCCCCCCCCeeeeecCCC-CCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeec-ccCCCc
Q 005240 6 GIGIHRLLPDDSLGPEKEVHGYPD-GAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPL-FESPDI 83 (706)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~i~~~~~-~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l-t~~~~~ 83 (706)
.|.|.++.. ++......+.. ...+..+.|+|++..++..+. ...|.++|+.+++.... .....
T Consensus 59 ~v~vW~~~~----~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~----------D~~i~lWd~~~~~~~~~~~~~~~- 123 (321)
T 3ow8_A 59 LVKVWKWRD----ERLDLQWSLEGHQLGVVSVDISHTLPIAASSSL----------DAHIRLWDLENGKQIKSIDAGPV- 123 (321)
T ss_dssp CEEEEEEET----TEEEEEEEECCCSSCEEEEEECSSSSEEEEEET----------TSEEEEEETTTTEEEEEEECCTT-
T ss_pred CEEEEECCC----CCeeeeeeeccCCCCEEEEEECCCCCEEEEEeC----------CCcEEEEECCCCCEEEEEeCCCc-
Confidence 467777755 43322211222 225788999999998877542 35788889888765443 22222
Q ss_pred cccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEc
Q 005240 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (706)
Q Consensus 84 ~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~ 163 (706)
.+..+.|+|||++|+.... .+.+.+++
T Consensus 124 ----~~~~~~~spdg~~l~~g~~-------------------------------------------------dg~v~i~~ 150 (321)
T 3ow8_A 124 ----DAWTLAFSPDSQYLATGTH-------------------------------------------------VGKVNIFG 150 (321)
T ss_dssp ----CCCCEEECTTSSEEEEECT-------------------------------------------------TSEEEEEE
T ss_pred ----cEEEEEECCCCCEEEEEcC-------------------------------------------------CCcEEEEE
Confidence 2567899999999887632 15677778
Q ss_pred c-CCC-ceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeE-EcccCCCCCCCCcccCc
Q 005240 164 L-DGT-AKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR-ELCDLPPAEDIPVCYNS 239 (706)
Q Consensus 164 l-~g~-~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~~~~~p~~~~~ 239 (706)
+ +++ ...+... ..+..++|+|||++|+..+.. ..|.+||+.+++.. .+....
T Consensus 151 ~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~d-------------g~i~iwd~~~~~~~~~~~~h~----------- 206 (321)
T 3ow8_A 151 VESGKKEYSLDTRGKFILSIAYSPDGKYLASGAID-------------GIINIFDIATGKLLHTLEGHA----------- 206 (321)
T ss_dssp TTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETT-------------SCEEEEETTTTEEEEEECCCS-----------
T ss_pred cCCCceeEEecCCCceEEEEEECCCCCEEEEEcCC-------------CeEEEEECCCCcEEEEEcccC-----------
Confidence 7 443 3333333 568899999999999876544 37999999866543 332221
Q ss_pred cCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCc-eEEeecccccccceecCCCceEEEEee
Q 005240 240 VREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP-EILHKLDLRFRSVSWCDDSLALVNETW 318 (706)
Q Consensus 240 ~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~-~~l~~~~~~~~~~~wspDg~~l~~~~~ 318 (706)
..+..+.|+||++. |+.. .. ...|.+||+ ..++. ..+......+..+.|+||++.|+..+.
T Consensus 207 --~~v~~l~~spd~~~-l~s~-s~-----------dg~i~iwd~---~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~ 268 (321)
T 3ow8_A 207 --MPIRSLTFSPDSQL-LVTA-SD-----------DGYIKIYDV---QHANLAGTLSGHASWVLNVAFCPDDTHFVSSSS 268 (321)
T ss_dssp --SCCCEEEECTTSCE-EEEE-CT-----------TSCEEEEET---TTCCEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred --CceeEEEEcCCCCE-EEEE-cC-----------CCeEEEEEC---CCcceeEEEcCCCCceEEEEECCCCCEEEEEeC
Confidence 12457899999985 5422 11 124788888 44443 345556777889999999998887653
Q ss_pred ccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEee
Q 005240 319 YKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 319 ~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 371 (706)
+ + .|.++|+.++ +....+..... ....+.|+|||++|+...
T Consensus 269 D--~--~v~iwd~~~~--~~~~~~~~h~~------~v~~v~~s~~g~~l~s~~ 309 (321)
T 3ow8_A 269 D--K--SVKVWDVGTR--TCVHTFFDHQD------QVWGVKYNGNGSKIVSVG 309 (321)
T ss_dssp T--S--CEEEEETTTT--EEEEEECCCSS------CEEEEEECTTSSEEEEEE
T ss_pred C--C--cEEEEeCCCC--EEEEEEcCCCC------cEEEEEECCCCCEEEEEe
Confidence 2 3 3556666663 22222221111 122477899999887654
|
| >2qm0_A BES; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: SVY; 1.84A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.6e-14 Score=145.18 Aligned_cols=195 Identities=12% Similarity=0.036 Sum_probs=125.2
Q ss_pred CCCceEEEEEEcc-CCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHH-HHCC
Q 005240 478 ASLQKEMIKYQRK-DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIF-LARR 555 (706)
Q Consensus 478 ~~~~~~~~~~~~~-dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~G 555 (706)
.....+.+++.+. +|.++..++|+|+++++++ ++|+|+++||++... .. ..+ ......+ ++.|
T Consensus 14 ~~~~~~~~~~~s~~~g~~~~~~v~~P~~~~~~~--~~Pvl~~lhG~~~~~-----~~----~~~----~~~~~~~~~~~g 78 (275)
T 2qm0_A 14 ITSNTEQWKMYSKLEGKEYQIHISKPKQPAPDS--GYPVIYVLDGNAFFQ-----TF----HEA----VKIQSVRAEKTG 78 (275)
T ss_dssp CCTTEEEEEEECTTTCCEEEEEEECCSSCCCTT--CEEEEEEESHHHHHH-----HH----HHH----HHHHGGGHHHHC
T ss_pred ecCCceEEEEEecCCCCEEEEEEECCCCCCCCC--CccEEEEecChHHHH-----HH----HHH----HHHHhhcchhcC
Confidence 3457788999986 7899999999999987654 599999999974200 00 000 0011112 3467
Q ss_pred ---eEEEEcCCCCcC---------CCCCC-----CC---------chhhHHHHHHHH-HHHHHHHHHcCCCCCCcEEEEE
Q 005240 556 ---FAVLAGPSIPII---------GEGDK-----LP---------NDRFVEQLVSSA-EAAVEEVVRRGVADPSRIAVGG 608 (706)
Q Consensus 556 ---~~v~~~~~~~~~---------g~g~~-----~~---------~~~~~~~~~~D~-~~~~~~l~~~~~id~~~i~i~G 608 (706)
++|+.+++++.. .++.. +. .........+-+ ..++.++.++..+|+++++|+|
T Consensus 79 ~~~~ivV~i~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~l~~~i~~~~~~~~~~~~~~G 158 (275)
T 2qm0_A 79 VSPAIIVGVGYPIEGAFSGEERCYDFTPSVISKDAPLKPDGKPWPKTGGAHNFFTFIEEELKPQIEKNFEIDKGKQTLFG 158 (275)
T ss_dssp CCCCEEEEEECSCSSSCCHHHHHHHHCSSCCCC---------CCCCCCCHHHHHHHHHHTHHHHHHHHSCEEEEEEEEEE
T ss_pred CCCeEEEEECCCCCCcCcccccccccCCCCccccCCccccCCcCCCCCChHHHHHHHHHHHHHHHHhhccCCCCCCEEEE
Confidence 999886665421 11111 00 000001112112 1345566666558999999999
Q ss_pred echHHHHHHHHHHhCCCceeEEEeccCCCCCCC---------------C-----Ccc------------chHHHHHHHH-
Q 005240 609 HSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTL---------------T-----PFG------------FQAERFFDAL- 655 (706)
Q Consensus 609 ~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d~~~---------------~-----~~~------------~~~~~~~~~l- 655 (706)
+||||++|++++.++|++|+++++.+|.+.+.. . |.. -+.++|+++|
T Consensus 159 ~S~GG~~a~~~~~~~p~~f~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~D~~~~~~~~~~~~~~L~ 238 (275)
T 2qm0_A 159 HXLGGLFALHILFTNLNAFQNYFISSPSIWWNNKSVLEKEENLIIELNNAKFETGVFLTVGSLEREHMVVGANELSERLL 238 (275)
T ss_dssp ETHHHHHHHHHHHHCGGGCSEEEEESCCTTHHHHGGGGGTTHHHHHHHTCSSCEEEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred ecchhHHHHHHHHhCchhhceeEEeCceeeeChHHHHHHHHHHHhhhcccCCCceEEEEeCCcccchhhHHHHHHHHHHH
Confidence 999999999999999999999999999864210 0 000 0234899999
Q ss_pred --HhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHH
Q 005240 656 --KGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWL 691 (706)
Q Consensus 656 --~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~ 691 (706)
+..|+++++.+|||++|+.. +...+...++||
T Consensus 239 ~~~~~g~~~~~~~~~g~~H~~~----~~~~l~~~l~~l 272 (275)
T 2qm0_A 239 QVNHDKLKFKFYEAEGENHASV----VPTSLSKGLRFI 272 (275)
T ss_dssp HCCCTTEEEEEEEETTCCTTTH----HHHHHHHHHHHH
T ss_pred hcccCCceEEEEECCCCCcccc----HHHHHHHHHHHH
Confidence 56788999999999999643 233445555665
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.53 E-value=8e-13 Score=140.98 Aligned_cols=299 Identities=9% Similarity=0.116 Sum_probs=167.4
Q ss_pred cccceeeCCCCCeEEEEeecccc-ccccCCceeEEEEEcCCCcee-ecccCCCccccccccceEEecCCcEEEEEecCCC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEE-DNVSSCKLRVWIADAETGEAK-PLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSR 109 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~-~~~~~~~~~l~~~d~~~g~~~-~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~ 109 (706)
.+..++|||||+.++++...... .........|.++++.+++.. .+..... ...+..+.|+|||++|+....+
T Consensus 14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~~d-- 88 (416)
T 2pm9_A 14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQV---DSKFNDLDWSHNNKIIAGALDN-- 88 (416)
T ss_dssp ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCC---SSCEEEEEECSSSSCEEEEESS--
T ss_pred hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEec---CCceEEEEECCCCCeEEEEccC--
Confidence 57789999999955555421100 000012356778888876532 2211111 1237789999999988876421
Q ss_pred CCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCC------CceecCCC-ceEeeeee
Q 005240 110 RDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG------TAKDFGTP-AVYTAVEP 182 (706)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g------~~~~lt~~-~~~~~~~~ 182 (706)
+.|.++++.. ....+... ..+..++|
T Consensus 89 -----------------------------------------------g~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~ 121 (416)
T 2pm9_A 89 -----------------------------------------------GSLELYSTNEANNAINSMARFSNHSSSVKTVKF 121 (416)
T ss_dssp -----------------------------------------------SCEEEECCSSTTSCCCEEEECCCSSSCCCEEEE
T ss_pred -----------------------------------------------CeEEEeecccccccccchhhccCCccceEEEEE
Confidence 4566667632 22334333 67889999
Q ss_pred CCC-CcEEEEEeeccCcccccccccccceEEEEecCCCe-------eEEcccCCCCCCCCcccCccCCCCcceeeecCCC
Q 005240 183 SPD-QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL-------VRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (706)
Q Consensus 183 SpD-G~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-------~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~ 254 (706)
+|| ++.|+..+.. ..|.+|++.+++ ...+...... ...+..+.|+|++.
T Consensus 122 ~~~~~~~l~s~~~d-------------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~----------~~~v~~~~~~~~~~ 178 (416)
T 2pm9_A 122 NAKQDNVLASGGNN-------------GEIFIWDMNKCTESPSNYTPLTPGQSMSS----------VDEVISLAWNQSLA 178 (416)
T ss_dssp CSSSTTBEEEECSS-------------SCEEBCBTTTTSSCTTTCCCBCCCCSCCS----------SCCCCEEEECSSCT
T ss_pred cCCCCCEEEEEcCC-------------CeEEEEECCCCccccccccccccccccCC----------CCCeeEEEeCCCCC
Confidence 999 6666544432 379999998654 1111111110 12245889999965
Q ss_pred ceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceE-Eeec------ccccccceecCCCc-eEEEEeeccccceEE
Q 005240 255 STLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEI-LHKL------DLRFRSVSWCDDSL-ALVNETWYKTSQTRT 326 (706)
Q Consensus 255 ~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~-l~~~------~~~~~~~~wspDg~-~l~~~~~~~~~~~~l 326 (706)
. +++.... ...|.+||+ .+++... +... ...+..+.|+|++. .|+... .......|
T Consensus 179 ~-~l~~~~~-----------dg~v~iwd~---~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~~~~~i 242 (416)
T 2pm9_A 179 H-VFASAGS-----------SNFASIWDL---KAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATAT-GSDNDPSI 242 (416)
T ss_dssp T-EEEEESS-----------SSCEEEEET---TTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEE-CCSSSCCC
T ss_pred c-EEEEEcC-----------CCCEEEEEC---CCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEE-CCCCCceE
Confidence 5 3333211 124788888 4444333 3322 56688899999985 444443 32222246
Q ss_pred EEEcCCCCCCCceeeec-CcccccccCCCCCceEecc-CCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCC
Q 005240 327 WLVCPGSKDVAPRVLFD-RVFENVYSDPGSPMMTRTS-TGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINT 404 (706)
Q Consensus 327 ~~~d~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~ 404 (706)
.++|+.++. .+...+. .... ....+.|+| ++++|+..... ..+..+|+.+
T Consensus 243 ~~~d~~~~~-~~~~~~~~~~~~------~v~~~~~s~~~~~~l~s~~~d---------------------g~v~~wd~~~ 294 (416)
T 2pm9_A 243 LIWDLRNAN-TPLQTLNQGHQK------GILSLDWCHQDEHLLLSSGRD---------------------NTVLLWNPES 294 (416)
T ss_dssp CEEETTSTT-SCSBCCCSCCSS------CEEEEEECSSCSSCEEEEESS---------------------SEEEEECSSS
T ss_pred EEEeCCCCC-CCcEEeecCccC------ceeEEEeCCCCCCeEEEEeCC---------------------CCEEEeeCCC
Confidence 777777642 2222222 1111 123477899 88877765421 1356677777
Q ss_pred CceeeeecccchhhhhhhhhhccCCCceecccCCCEEEEEEecCCCCcEEEEEECCCCc
Q 005240 405 GSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKK 463 (706)
Q Consensus 405 g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~p~~v~~~~~~~~~ 463 (706)
++....+.... .....+.|+||+..++++.+.. ..|.+|++.+++
T Consensus 295 ~~~~~~~~~~~-----------~~v~~~~~s~~~~~~l~s~~~d---~~i~iw~~~~~~ 339 (416)
T 2pm9_A 295 AEQLSQFPARG-----------NWCFKTKFAPEAPDLFACASFD---NKIEVQTLQNLT 339 (416)
T ss_dssp CCEEEEEECSS-----------SCCCCEEECTTCTTEEEECCSS---SEEEEEESCCCC
T ss_pred CccceeecCCC-----------CceEEEEECCCCCCEEEEEecC---CcEEEEEccCCC
Confidence 76544333221 1233578999995455544433 458899987654
|
| >3og9_A Protein YAHD A copper inducible hydrolase; alpha/beta hydrolase, copper homeostasis, malic acid; 1.88A {Lactococcus lactis subsp} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.53 E-value=2.8e-13 Score=129.95 Aligned_cols=159 Identities=13% Similarity=0.074 Sum_probs=111.5
Q ss_pred ceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCC----------cCCCCCCCC---chhhH
Q 005240 513 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIP----------IIGEGDKLP---NDRFV 579 (706)
Q Consensus 513 ~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~----------~~g~g~~~~---~~~~~ 579 (706)
.| ||++||.+.. ... ...++..|+ .||.|+.++... ..|+|.... .....
T Consensus 17 ~p-vv~lHG~g~~-----------~~~----~~~~~~~l~-~~~~v~~~~~~~~~~g~~~~~~~~g~g~~~~~~~~~~~~ 79 (209)
T 3og9_A 17 AP-LLLLHSTGGD-----------EHQ----LVEIAEMIA-PSHPILSIRGRINEQGVNRYFKLRGLGGFTKENFDLESL 79 (209)
T ss_dssp CC-EEEECCTTCC-----------TTT----THHHHHHHS-TTCCEEEECCSBCGGGCCBSSCBCSCTTCSGGGBCHHHH
T ss_pred CC-EEEEeCCCCC-----------HHH----HHHHHHhcC-CCceEEEecCCcCCCCcccceecccccccccCCCCHHHH
Confidence 68 9999996321 011 113344454 788888766321 112222111 12234
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCCCCC--------CCcc------
Q 005240 580 EQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTL--------TPFG------ 645 (706)
Q Consensus 580 ~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d~~~--------~~~~------ 645 (706)
.....++.+.++.+.++..+|+++++|+|+|+||++++.++.++|++++++++.+|...... .|..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~d~~~~~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~p~li~~G~~ 159 (209)
T 3og9_A 80 DEETDWLTDEVSLLAEKHDLDVHKMIAIGYSNGANVALNMFLRGKINFDKIIAFHGMQLEDFEQTVQLDDKHVFLSYAPN 159 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGCEEEEETHHHHHHHHHHHTTSCCCSEEEEESCCCCCCCCCCCCCTTCEEEEEECTT
T ss_pred HHHHHHHHHHHHHHHHhcCCCcceEEEEEECHHHHHHHHHHHhCCcccceEEEECCCCCCcccccccccCCCEEEEcCCC
Confidence 45677777888888776668999999999999999999999999999999999998765321 1111
Q ss_pred ------chHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHH
Q 005240 646 ------FQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKY 694 (706)
Q Consensus 646 ------~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~~~~ 694 (706)
-..+++++.|+..+.++++.+|+ .+|.+. .+..+.+.+||+++
T Consensus 160 D~~v~~~~~~~~~~~l~~~~~~~~~~~~~-~gH~~~-----~~~~~~~~~~l~~~ 208 (209)
T 3og9_A 160 DMIVPQKNFGDLKGDLEDSGCQLEIYESS-LGHQLT-----QEEVLAAKKWLTET 208 (209)
T ss_dssp CSSSCHHHHHHHHHHHHHTTCEEEEEECS-STTSCC-----HHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCceEEEEcC-CCCcCC-----HHHHHHHHHHHHhh
Confidence 13458999999999999999998 699985 35678899999874
|
| >3u0v_A Lysophospholipase-like protein 1; alpha, beta hydrolase fold, hydrolase; 1.72A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.9e-13 Score=132.64 Aligned_cols=115 Identities=21% Similarity=0.206 Sum_probs=91.5
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCCCCC------------CC-c
Q 005240 578 FVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTL------------TP-F 644 (706)
Q Consensus 578 ~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d~~~------------~~-~ 644 (706)
......+++...++.+.+. .+|.++++|+|+|+||++++.++.++|++|+++++.+|..+... .| .
T Consensus 95 ~~~~~~~~l~~~~~~~~~~-~~~~~~~~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~pp~ 173 (239)
T 3u0v_A 95 SIDVMCQVLTDLIDEEVKS-GIKKNRILIGGFSMGGCMAMHLAYRNHQDVAGVFALSSFLNKASAVYQALQKSNGVLPEL 173 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHT-TCCGGGEEEEEETHHHHHHHHHHHHHCTTSSEEEEESCCCCTTCHHHHHHHHCCSCCCCE
T ss_pred hHHHHHHHHHHHHHHHHHh-CCCcccEEEEEEChhhHHHHHHHHhCccccceEEEecCCCCchhHHHHHHHhhccCCCCE
Confidence 4555667777777766653 37889999999999999999999999999999999999865331 22 2
Q ss_pred cc------------hHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHhccC
Q 005240 645 GF------------QAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCLSN 698 (706)
Q Consensus 645 ~~------------~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~~~~l~~~ 698 (706)
.. ..+++++.|++.+.++++++||+++|.+. .+..+.+.+||+++|...
T Consensus 174 li~~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~g~~H~~~-----~~~~~~~~~~l~~~l~~~ 234 (239)
T 3u0v_A 174 FQCHGTADELVLHSWAEETNSMLKSLGVTTKFHSFPNVYHELS-----KTELDILKLWILTKLPGE 234 (239)
T ss_dssp EEEEETTCSSSCHHHHHHHHHHHHHTTCCEEEEEETTCCSSCC-----HHHHHHHHHHHHHHCC--
T ss_pred EEEeeCCCCccCHHHHHHHHHHHHHcCCcEEEEEeCCCCCcCC-----HHHHHHHHHHHHHhCCCc
Confidence 11 23489999999999999999999999986 366889999999998653
|
| >1sfr_A Antigen 85-A; alpha/beta hydrolase, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 2.70A {Mycobacterium tuberculosis} SCOP: c.69.1.3 | Back alignment and structure |
|---|
Probab=99.53 E-value=3.1e-13 Score=137.77 Aligned_cols=196 Identities=15% Similarity=0.035 Sum_probs=128.2
Q ss_pred CceEEEEEEcc-CCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEE
Q 005240 480 LQKEMIKYQRK-DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAV 558 (706)
Q Consensus 480 ~~~~~~~~~~~-dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v 558 (706)
.+.+.+++.+. .+.++..+ +.| .. + ++|+||++||++... ....|... ....+.+++.||+|
T Consensus 7 ~~v~~~~~~S~~~~~~i~v~-~~p-~~---~--~~p~vvllHG~~~~~------~~~~w~~~----~~~~~~~~~~~~~v 69 (304)
T 1sfr_A 7 LPVEYLQVPSPSMGRDIKVQ-FQS-GG---A--NSPALYLLDGLRAQD------DFSGWDIN----TPAFEWYDQSGLSV 69 (304)
T ss_dssp CCCEEEEEEETTTTEEEEEE-EEC-CS---T--TBCEEEEECCTTCCS------SSCHHHHH----CCHHHHHTTSSCEE
T ss_pred ceEEEEEEECccCCCceEEE-ECC-CC---C--CCCEEEEeCCCCCCC------CcchhhcC----CCHHHHHhcCCeEE
Confidence 35567777765 46778877 444 32 2 489999999974210 00011100 01235566789999
Q ss_pred EEcCCCCcCCCCCCCC---------chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeE
Q 005240 559 LAGPSIPIIGEGDKLP---------NDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCC 629 (706)
Q Consensus 559 ~~~~~~~~~g~g~~~~---------~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a 629 (706)
++++.+++.+|..... ...+.....+|+.. ++.++..+++++++|+|+||||++|+.++.++|++|++
T Consensus 70 v~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~---~i~~~~~~~~~~~~l~G~S~GG~~al~~a~~~p~~~~~ 146 (304)
T 1sfr_A 70 VMPVGGQSSFYSDWYQPACGKAGCQTYKWETFLTSELPG---WLQANRHVKPTGSAVVGLSMAASSALTLAIYHPQQFVY 146 (304)
T ss_dssp EEECCCTTCTTCBCSSCEEETTEEECCBHHHHHHTHHHH---HHHHHHCBCSSSEEEEEETHHHHHHHHHHHHCTTTEEE
T ss_pred EEECCCCCccccccCCccccccccccccHHHHHHHHHHH---HHHHHCCCCCCceEEEEECHHHHHHHHHHHhCccceeE
Confidence 9988765434321111 11222222344444 34343347888999999999999999999999999999
Q ss_pred EEeccCCCCCCC-----------------------------------------------CCc-------cc---------
Q 005240 630 GIARSGSYNKTL-----------------------------------------------TPF-------GF--------- 646 (706)
Q Consensus 630 ~v~~~~~~d~~~-----------------------------------------------~~~-------~~--------- 646 (706)
+++++|.++... .|. ..
T Consensus 147 ~v~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~l~~~~~pi~l~~G~~D~~~~~~~~~~ 226 (304)
T 1sfr_A 147 AGAMSGLLDPSQAMGPTLIGLAMGDAGGYKASDMWGPKEDPAWQRNDPLLNVGKLIANNTRVWVYCGNGKPSDLGGNNLP 226 (304)
T ss_dssp EEEESCCSCTTSTTHHHHHHHHHHHTTSCCHHHHHCSTTSTHHHHSCTTTTHHHHHHHTCEEEEECCCSCCBTTBCCSHH
T ss_pred EEEECCccCccccchhhhhhHhhhhccccchHHhcCCcchhhhHhcCHHHHHHHhhhcCCeEEEEecCCCCccccccccc
Confidence 999999765321 010 00
Q ss_pred ----------hHHHHHHHHHhCC-CcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHhccC
Q 005240 647 ----------QAERFFDALKGHG-ALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCLSN 698 (706)
Q Consensus 647 ----------~~~~~~~~l~~~~-~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~~~~l~~~ 698 (706)
+.++++++|+++| +++++.+|++++|.+. .+...+..++.||.++|...
T Consensus 227 ~~~~e~~~~~~~~~~~~~L~~~G~~~v~~~~~~~g~H~~~---~w~~~l~~~l~~l~~~l~~~ 286 (304)
T 1sfr_A 227 AKFLEGFVRTSNIKFQDAYNAGGGHNGVFDFPDSGTHSWE---YWGAQLNAMKPDLQRALGAT 286 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCSEEEECCSCCCSSHH---HHHHHHHHTHHHHHHHHTCC
T ss_pred cchhHHHHHHHHHHHHHHHHhCCCCceEEEecCCCccCHH---HHHHHHHHHHHHHHHhcCCC
Confidence 1238999999999 9999999987799864 24566788999999998743
|
| >1fj2_A Protein (acyl protein thioesterase 1); alpha/beta hydrolase, serine hydrolase, SAD, anomalous diffr hydrolase; 1.50A {Homo sapiens} SCOP: c.69.1.14 | Back alignment and structure |
|---|
Probab=99.53 E-value=1e-13 Score=135.09 Aligned_cols=173 Identities=11% Similarity=0.060 Sum_probs=121.5
Q ss_pred EEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCC-------------
Q 005240 499 LYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIP------------- 565 (706)
Q Consensus 499 l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~------------- 565 (706)
++.|+. +.+.|+||++||.+.. ...+ ......|++.||.|+.++..+
T Consensus 14 ~~~p~~-----~~~~~~vv~lHG~~~~-----------~~~~----~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~ 73 (232)
T 1fj2_A 14 AIVPAA-----RKATAAVIFLHGLGDT-----------GHGW----AEAFAGIRSSHIKYICPHAPVRPVTLNMNVAMPS 73 (232)
T ss_dssp EEECCS-----SCCSEEEEEECCSSSC-----------HHHH----HHHHHTTCCTTEEEEECCCCEEEEGGGTTEEEEC
T ss_pred cccCCC-----CCCCceEEEEecCCCc-----------cchH----HHHHHHHhcCCcEEEecCCCcccccccccccccc
Confidence 566764 1247999999996421 0011 123344555799999864321
Q ss_pred ---cCCCCCCCC-chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCCCCC
Q 005240 566 ---IIGEGDKLP-NDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTL 641 (706)
Q Consensus 566 ---~~g~g~~~~-~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d~~~ 641 (706)
.+|+..... .........+|+.++++++.+ ..+|+++++++|+|+||++++.++.++|++++++++.+|..+...
T Consensus 74 w~d~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~v~~~i~~~~~~~~~~ 152 (232)
T 1fj2_A 74 WFDIIGLSPDSQEDESGIKQAAENIKALIDQEVK-NGIPSNRIILGGFSQGGALSLYTALTTQQKLAGVTALSCWLPLRA 152 (232)
T ss_dssp SSCBCCCSTTCCBCHHHHHHHHHHHHHHHHHHHH-TTCCGGGEEEEEETHHHHHHHHHHTTCSSCCSEEEEESCCCTTGG
T ss_pred ccccccCCcccccccHHHHHHHHHHHHHHHHHhc-CCCCcCCEEEEEECHHHHHHHHHHHhCCCceeEEEEeecCCCCCc
Confidence 223311111 233456678889999998877 557889999999999999999999999999999999999765321
Q ss_pred -------------CCcc---------c---hHHHHHHHHHhCCCc--EEEEEeCCCCccCCCcccHHHHHHHHHHHHHHH
Q 005240 642 -------------TPFG---------F---QAERFFDALKGHGAL--SRLVLLPFEHHVYAARENVMHVIWETDRWLQKY 694 (706)
Q Consensus 642 -------------~~~~---------~---~~~~~~~~l~~~~~~--~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~~~~ 694 (706)
.|.. . ..+++++.|+..+.+ ++++++++++|.+. .+..+.+.+||+++
T Consensus 153 ~~~~~~~~~~~~~~P~l~i~G~~D~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~H~~~-----~~~~~~i~~~l~~~ 227 (232)
T 1fj2_A 153 SFPQGPIGGANRDISILQCHGDCDPLVPLMFGSLTVEKLKTLVNPANVTFKTYEGMMHSSC-----QQEMMDVKQFIDKL 227 (232)
T ss_dssp GSCSSCCCSTTTTCCEEEEEETTCSSSCHHHHHHHHHHHHHHSCGGGEEEEEETTCCSSCC-----HHHHHHHHHHHHHH
T ss_pred cccccccccccCCCCEEEEecCCCccCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCcccC-----HHHHHHHHHHHHHh
Confidence 1110 0 234788899888865 99999999999883 34568999999999
Q ss_pred hcc
Q 005240 695 CLS 697 (706)
Q Consensus 695 l~~ 697 (706)
|..
T Consensus 228 l~~ 230 (232)
T 1fj2_A 228 LPP 230 (232)
T ss_dssp SCC
T ss_pred cCC
Confidence 864
|
| >3nuz_A Putative acetyl xylan esterase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 2.30A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.53 E-value=4.7e-14 Score=149.53 Aligned_cols=150 Identities=12% Similarity=0.048 Sum_probs=106.6
Q ss_pred CCCceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCccc--CC----CC-CcCCCCchHHHH
Q 005240 478 ASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVR--GS----PN-EFSGMTPTSSLI 550 (706)
Q Consensus 478 ~~~~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~--~~----~~-~~~~~~~~~~~~ 550 (706)
..++.+.+++.+.+|..++++++.|++. .+|+|+||++||++... . ... .+ +. .+......+++.
T Consensus 88 ~g~~~e~v~~~~~~g~~l~~~l~~P~~~----~~~~P~Vv~~HG~g~~~---~-~~~~~~g~~~~~~~~y~~~~~~~a~~ 159 (398)
T 3nuz_A 88 EGYRLEKWEFYPLPKCVSTFLVLIPDNI----NKPVPAILCIPGSGGNK---E-GLAGEPGIAPKLNDRYKDPKLTQALN 159 (398)
T ss_dssp SSEEEEEEEECCSTTBCEEEEEEEESSC----CSCEEEEEEECCTTCCH---H-HHHTCCCSSSTTCCSTTCTTTCHHHH
T ss_pred CCEEEEEEEEEcCCCcEEEEEEEeCCCC----CCCccEEEEEcCCCCCc---c-cccccccccccccccccchHHHHHHH
Confidence 4467889999999999999999999863 23589999999974310 0 000 00 00 000000146788
Q ss_pred HHHCCeEEEEcCCCCcCCCCCCC-------------------CchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEech
Q 005240 551 FLARRFAVLAGPSIPIIGEGDKL-------------------PNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSY 611 (706)
Q Consensus 551 l~~~G~~v~~~~~~~~~g~g~~~-------------------~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~ 611 (706)
|+++||+|+.++.+|....+... ....+....+.|+.++++||.+++.+|++||+|+|+||
T Consensus 160 la~~Gy~Vl~~D~rG~G~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~ald~l~~~~~vd~~rI~v~G~S~ 239 (398)
T 3nuz_A 160 FVKEGYIAVAVDNPAAGEASDLERYTLGSNYDYDVVSRYLLELGWSYLGYASYLDMQVLNWMKTQKHIRKDRIVVSGFSL 239 (398)
T ss_dssp HHTTTCEEEEECCTTSGGGCSSGGGTTTTSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCSSEEEEEEEEEEEGG
T ss_pred HHHCCCEEEEecCCCCCccccccccccccccchhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEEECH
Confidence 99999999998877543222111 01123334568999999999999889999999999999
Q ss_pred HHHHHHHHHHhCCCceeEEEeccCC
Q 005240 612 GAFMTAHLLAHAPHLFCCGIARSGS 636 (706)
Q Consensus 612 GG~~a~~~~~~~p~~~~a~v~~~~~ 636 (706)
||++|+++++.. ++++|+|+.+++
T Consensus 240 GG~~a~~~aa~~-~~i~a~v~~~~~ 263 (398)
T 3nuz_A 240 GTEPMMVLGTLD-TSIYAFVYNDFL 263 (398)
T ss_dssp GHHHHHHHHHHC-TTCCEEEEESCB
T ss_pred hHHHHHHHHhcC-CcEEEEEEeccc
Confidence 999999999987 688888886554
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=99.53 E-value=6.6e-12 Score=141.36 Aligned_cols=218 Identities=10% Similarity=0.041 Sum_probs=134.3
Q ss_pred cceeEeecCCCCCCCC-eeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceee---cccC
Q 005240 5 TGIGIHRLLPDDSLGP-EKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKP---LFES 80 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~-~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~---lt~~ 80 (706)
..|.|.++.. ++ .+.+++... .+..++|||||++||.... + ..|.++|+.+++... +..+
T Consensus 39 ~~v~l~~~~~----~~~~~~~~~h~~--~v~~~~~spdg~~lasg~~--------d--~~v~lWd~~~~~~~~~~~~~~~ 102 (611)
T 1nr0_A 39 TSVYTVPVGS----LTDTEIYTEHSH--QTTVAKTSPSGYYCASGDV--------H--GNVRIWDTTQTTHILKTTIPVF 102 (611)
T ss_dssp TEEEEEETTC----SSCCEEECCCSS--CEEEEEECTTSSEEEEEET--------T--SEEEEEESSSTTCCEEEEEECS
T ss_pred CEEEEecCCC----cccCeEecCCCC--ceEEEEECCCCcEEEEEeC--------C--CCEEEeECCCCcceeeEeeccc
Confidence 3578888865 43 333443222 4888999999999988653 2 467777876544322 2222
Q ss_pred CCccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEE
Q 005240 81 PDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLV 160 (706)
Q Consensus 81 ~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~ 160 (706)
.. .+..++|||||++|+...... . ....++
T Consensus 103 ~~-----~v~~v~fs~dg~~l~~~~~~~-~--------------------------------------------~~~~v~ 132 (611)
T 1nr0_A 103 SG-----PVKDISWDSESKRIAAVGEGR-E--------------------------------------------RFGHVF 132 (611)
T ss_dssp SS-----CEEEEEECTTSCEEEEEECCS-S--------------------------------------------CSEEEE
T ss_pred CC-----ceEEEEECCCCCEEEEEECCC-C--------------------------------------------ceeEEE
Confidence 22 378999999999988764311 0 114677
Q ss_pred EEccCCCceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeE-EcccCCCCCCCCcccC
Q 005240 161 LGSLDGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR-ELCDLPPAEDIPVCYN 238 (706)
Q Consensus 161 ~~~l~g~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~~~~~p~~~~ 238 (706)
+++.......+... ..+..++|+||++.++++.... ..+.+|+....+.. .+..+.
T Consensus 133 ~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D------------~~v~lwd~~~~~~~~~l~~H~---------- 190 (611)
T 1nr0_A 133 LFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDD------------NTVAIFEGPPFKFKSTFGEHT---------- 190 (611)
T ss_dssp ETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETT------------SCEEEEETTTBEEEEEECCCS----------
T ss_pred EeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCC------------CeEEEEECCCCeEeeeecccc----------
Confidence 77742233344444 6788999999998644444332 37899998765443 332221
Q ss_pred ccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceE-Ee-------ecccccccceecCCC
Q 005240 239 SVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEI-LH-------KLDLRFRSVSWCDDS 310 (706)
Q Consensus 239 ~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~-l~-------~~~~~~~~~~wspDg 310 (706)
..+..++|+|||+. |+-.. .+ ..|.+||+ .+++... +. .+...+..+.|+|||
T Consensus 191 ---~~V~~v~fspdg~~-las~s-~D-----------~~i~lwd~---~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg 251 (611)
T 1nr0_A 191 ---KFVHSVRYNPDGSL-FASTG-GD-----------GTIVLYNG---VDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDG 251 (611)
T ss_dssp ---SCEEEEEECTTSSE-EEEEE-TT-----------SCEEEEET---TTCCEEEECBCTTSSSCSSSSCEEEEEECTTS
T ss_pred ---CceEEEEECCCCCE-EEEEE-CC-----------CcEEEEEC---CCCcEeeeeccccccccccCCCEEEEEECCCC
Confidence 22557899999986 54221 11 24778887 4444333 32 356678889999999
Q ss_pred ceEEEEeeccccceEEEEEcCCC
Q 005240 311 LALVNETWYKTSQTRTWLVCPGS 333 (706)
Q Consensus 311 ~~l~~~~~~~~~~~~l~~~d~~~ 333 (706)
+.|+..+.+ + .|.++|+.+
T Consensus 252 ~~l~s~s~D--~--~v~lWd~~~ 270 (611)
T 1nr0_A 252 TKIASASAD--K--TIKIWNVAT 270 (611)
T ss_dssp SEEEEEETT--S--EEEEEETTT
T ss_pred CEEEEEeCC--C--eEEEEeCCC
Confidence 998876532 2 355556555
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=4.9e-12 Score=130.78 Aligned_cols=224 Identities=10% Similarity=0.031 Sum_probs=119.3
Q ss_pred ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCe-eEEcccCCCCCCCCcccCccCCCCcceeeecCC
Q 005240 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL-VRELCDLPPAEDIPVCYNSVREGMRSISWRADK 253 (706)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg 253 (706)
..+..++|||||++|++..... ..|.+|+++.+. .+.+...... ..+..+.|+|||
T Consensus 84 ~~~~~~~~s~dg~~l~~~~~~~------------~~i~~~d~~~~~~~~~~~~~~~~-----------~~~~~~~~s~dg 140 (343)
T 1ri6_A 84 GSLTHISTDHQGQFVFVGSYNA------------GNVSVTRLEDGLPVGVVDVVEGL-----------DGCHSANISPDN 140 (343)
T ss_dssp SCCSEEEECTTSSEEEEEETTT------------TEEEEEEEETTEEEEEEEEECCC-----------TTBCCCEECTTS
T ss_pred CCCcEEEEcCCCCEEEEEecCC------------CeEEEEECCCCccccccccccCC-----------CCceEEEECCCC
Confidence 4567889999999998776532 368899884221 1111111111 123467999999
Q ss_pred CceEEEEEeccCCCCccccCccceeeeecCCCCCC-CCceEEe-----e-cccccccceecCCCceEEEEeeccccceEE
Q 005240 254 PSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEG-EKPEILH-----K-LDLRFRSVSWCDDSLALVNETWYKTSQTRT 326 (706)
Q Consensus 254 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~~~~l~-----~-~~~~~~~~~wspDg~~l~~~~~~~~~~~~l 326 (706)
+. |+..... .+.|+++++ .. ++...+. . .......+.|+|||+.|++... ..+ .|
T Consensus 141 ~~-l~~~~~~-----------~~~v~~~d~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~-~~~--~i 202 (343)
T 1ri6_A 141 RT-LWVPALK-----------QDRICLFTV---SDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE-LNS--SV 202 (343)
T ss_dssp SE-EEEEEGG-----------GTEEEEEEE---CTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEET-TTT--EE
T ss_pred CE-EEEecCC-----------CCEEEEEEe---cCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeC-CCC--EE
Confidence 87 6544211 124778887 44 5554322 1 1234556889999998877642 223 45
Q ss_pred EEEcCCCCCCCceeeecCc-ccccccCC-CCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecC-
Q 005240 327 WLVCPGSKDVAPRVLFDRV-FENVYSDP-GSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDIN- 403 (706)
Q Consensus 327 ~~~d~~~~~~~~~~l~~~~-~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~- 403 (706)
.+++++...++...+.... ........ ....+.|+|||++|++.... ...+..++++
T Consensus 203 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~--------------------~~~i~v~d~~~ 262 (343)
T 1ri6_A 203 DVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRT--------------------ASLITVFSVSE 262 (343)
T ss_dssp EEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETT--------------------TTEEEEEEECT
T ss_pred EEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecC--------------------CCEEEEEEEcC
Confidence 5555543223332221100 00000000 11137899999998776421 1134445554
Q ss_pred -CCceeeeecccchhhhhhhhhhccCCCceecccCCCEEEEEEecCCCCcEEEEEECCCCceeEeecC
Q 005240 404 -TGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNF 470 (706)
Q Consensus 404 -~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~p~~v~~~~~~~~~~~~lt~~ 470 (706)
+++.+.+...... .....+.|+|||++|+++.. ....-.+|.+|..+++.+++..+
T Consensus 263 ~~~~~~~~~~~~~~----------~~~~~~~~s~dg~~l~~~~~-~~~~v~v~~~d~~~g~~~~~~~~ 319 (343)
T 1ri6_A 263 DGSVLSKEGFQPTE----------TQPRGFNVDHSGKYLIAAGQ-KSHHISVYEIVGEQGLLHEKGRY 319 (343)
T ss_dssp TSCCEEEEEEEECS----------SSCCCEEECTTSSEEEEECT-TTCEEEEEEEETTTTEEEEEEEE
T ss_pred CCCceEEeeeecCC----------CccceEEECCCCCEEEEecC-CCCeEEEEEEcCCCceeeEcccc
Confidence 4544443222110 01235789999987776543 22333455557778877776654
|
| >3pfb_A Cinnamoyl esterase; alpha/beta hydrolase fold, hydrolase, cinnamoyl/Fe esterase, hydroxycinammates, extracellular; HET: ZYC; 1.58A {Lactobacillus johnsonii} PDB: 3pf9_A* 3pfc_A* 3s2z_A* 3pf8_A 3qm1_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=2.9e-13 Score=135.13 Aligned_cols=188 Identities=16% Similarity=0.085 Sum_probs=130.9
Q ss_pred ceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEE
Q 005240 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 560 (706)
Q Consensus 481 ~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~ 560 (706)
..+.+.+. .+|..|.++++.|.+ . +.|+||++||.+.. ........++..|++.||.|+.
T Consensus 21 ~~~~~~~~-~~g~~l~~~~~~p~~---~---~~p~vv~~HG~~~~-------------~~~~~~~~~~~~l~~~G~~v~~ 80 (270)
T 3pfb_A 21 GMATITLE-RDGLQLVGTREEPFG---E---IYDMAIIFHGFTAN-------------RNTSLLREIANSLRDENIASVR 80 (270)
T ss_dssp EEEEEEEE-ETTEEEEEEEEECSS---S---SEEEEEEECCTTCC-------------TTCHHHHHHHHHHHHTTCEEEE
T ss_pred cceEEEec-cCCEEEEEEEEcCCC---C---CCCEEEEEcCCCCC-------------ccccHHHHHHHHHHhCCcEEEE
Confidence 45666666 489999999999864 1 26999999996421 0010112456678889999999
Q ss_pred cCCCCcCCCCCCCCc--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCC
Q 005240 561 GPSIPIIGEGDKLPN--DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYN 638 (706)
Q Consensus 561 ~~~~~~~g~g~~~~~--~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d 638 (706)
.+.+ |+|.+... .......++|+.++++++.++..+ ++++++|+|+||++++.++.++|++++++++.+|..+
T Consensus 81 ~d~~---G~G~s~~~~~~~~~~~~~~d~~~~i~~l~~~~~~--~~i~l~G~S~Gg~~a~~~a~~~p~~v~~~v~~~~~~~ 155 (270)
T 3pfb_A 81 FDFN---GHGDSDGKFENMTVLNEIEDANAILNYVKTDPHV--RNIYLVGHAQGGVVASMLAGLYPDLIKKVVLLAPAAT 155 (270)
T ss_dssp ECCT---TSTTSSSCGGGCCHHHHHHHHHHHHHHHHTCTTE--EEEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCTH
T ss_pred Eccc---cccCCCCCCCccCHHHHHHhHHHHHHHHHhCcCC--CeEEEEEeCchhHHHHHHHHhCchhhcEEEEeccccc
Confidence 7766 45544332 223566789999999999876433 5999999999999999999999999999999998753
Q ss_pred CC----------------CC---------------------------------Ccc--------chHHHHHHHHHhCCCc
Q 005240 639 KT----------------LT---------------------------------PFG--------FQAERFFDALKGHGAL 661 (706)
Q Consensus 639 ~~----------------~~---------------------------------~~~--------~~~~~~~~~l~~~~~~ 661 (706)
.. .. |.. +-..+..+.+.+.-..
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~ 235 (270)
T 3pfb_A 156 LKGDALEGNTQGVTYNPDHIPDRLPFKDLTLGGFYLRIAQQLPIYEVSAQFTKPVCLIHGTDDTVVSPNASKKYDQIYQN 235 (270)
T ss_dssp HHHHHHHTEETTEECCTTSCCSEEEETTEEEEHHHHHHHHHCCHHHHHTTCCSCEEEEEETTCSSSCTHHHHHHHHHCSS
T ss_pred cchhhhhhhhhccccCcccccccccccccccchhHhhcccccCHHHHHhhCCccEEEEEcCCCCCCCHHHHHHHHHhCCC
Confidence 11 00 000 0000444445554457
Q ss_pred EEEEEeCCCCccCCCcccHHHHHHHHHHHHHHH
Q 005240 662 SRLVLLPFEHHVYAARENVMHVIWETDRWLQKY 694 (706)
Q Consensus 662 ~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~~~~ 694 (706)
.+++++++++|.+. ......+.+.+.+||+++
T Consensus 236 ~~~~~~~~~gH~~~-~~~~~~~~~~i~~fl~~~ 267 (270)
T 3pfb_A 236 STLHLIEGADHCFS-DSYQKNAVNLTTDFLQNN 267 (270)
T ss_dssp EEEEEETTCCTTCC-THHHHHHHHHHHHHHC--
T ss_pred CeEEEcCCCCcccC-ccchHHHHHHHHHHHhhc
Confidence 89999999999886 445677888888888764
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.52 E-value=5.9e-12 Score=131.97 Aligned_cols=203 Identities=11% Similarity=0.117 Sum_probs=122.2
Q ss_pred eEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCc
Q 005240 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPS 255 (706)
Q Consensus 176 ~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~ 255 (706)
.+..++|||||++|++.+... ...|.+||+.+++........ ..+..++|||||+.
T Consensus 135 ~~~~v~fSpDg~~la~as~~~-----------d~~i~iwd~~~~~~~~~~~~~-------------~~V~~v~fspdg~~ 190 (365)
T 4h5i_A 135 YTKLVYISREGTVAAIASSKV-----------PAIMRIIDPSDLTEKFEIETR-------------GEVKDLHFSTDGKV 190 (365)
T ss_dssp CEEEEEECTTSSCEEEEESCS-----------SCEEEEEETTTTEEEEEEECS-------------SCCCEEEECTTSSE
T ss_pred CEEEEEEcCCCCEEEEEECCC-----------CCEEEEeECCCCcEEEEeCCC-------------CceEEEEEccCCce
Confidence 467899999999998765432 247999999976654433322 12558899999996
Q ss_pred eEEEEEeccCCCCccccCccceeeeecCCCCCCCCc-eEEe--ecccccccceecCCCceEEEEeeccccceEEEEEcCC
Q 005240 256 TLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP-EILH--KLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPG 332 (706)
Q Consensus 256 ~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~-~~l~--~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~ 332 (706)
|+... + +.+.+++. ..++. ...+ .....+..+.|+|||+.++..+........++.+++.
T Consensus 191 -l~s~s--~-----------~~~~~~~~---~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~ 253 (365)
T 4h5i_A 191 -VAYIT--G-----------SSLEVIST---VTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIK 253 (365)
T ss_dssp -EEEEC--S-----------SCEEEEET---TTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEE
T ss_pred -EEecc--c-----------eeEEEEEe---ccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccc
Confidence 55432 1 12444444 23332 2222 2355678899999999998876555444567777766
Q ss_pred CCCCCceee--ecCcccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeee
Q 005240 333 SKDVAPRVL--FDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERI 410 (706)
Q Consensus 333 ~~~~~~~~l--~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l 410 (706)
......... ...... ....+.|||||++|+....+ ..+.++|+.+++..+.
T Consensus 254 ~~~~~~~~~~~~~~~~~------~V~~~~~Spdg~~lasgs~D---------------------~~V~iwd~~~~~~~~~ 306 (365)
T 4h5i_A 254 SGNTSVLRSKQVTNRFK------GITSMDVDMKGELAVLASND---------------------NSIALVKLKDLSMSKI 306 (365)
T ss_dssp TTEEEEEEEEEEESSCS------CEEEEEECTTSCEEEEEETT---------------------SCEEEEETTTTEEEEE
T ss_pred cceecceeeeeecCCCC------CeEeEEECCCCCceEEEcCC---------------------CEEEEEECCCCcEEEE
Confidence 532111111 111111 12247789999998876421 1366788888865432
Q ss_pred e-cccchhhhhhhhhhccCCCceecccCCCEEEEEEecCCCCcEEEEEECCC
Q 005240 411 W-ESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPL 461 (706)
Q Consensus 411 ~-~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~p~~v~~~~~~~ 461 (706)
+ ... ......++|||||++|+-...+. .|.+|++..
T Consensus 307 ~~~gH-----------~~~V~~v~fSpdg~~laS~S~D~----tvrvw~ip~ 343 (365)
T 4h5i_A 307 FKQAH-----------SFAITEVTISPDSTYVASVSAAN----TIHIIKLPL 343 (365)
T ss_dssp ETTSS-----------SSCEEEEEECTTSCEEEEEETTS----EEEEEECCT
T ss_pred ecCcc-----------cCCEEEEEECCCCCEEEEEeCCC----eEEEEEcCC
Confidence 2 221 12233579999998776543333 488888754
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=4.1e-12 Score=132.11 Aligned_cols=197 Identities=16% Similarity=0.185 Sum_probs=121.7
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCcee--e-cccCCCccccccccceEEecCCcEEEEEecCC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAK--P-LFESPDICLNAVFGSFVWVNNSTLLIFTIPSS 108 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~--~-lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~ 108 (706)
.+..++|||||++||.... ++ .|.++++++++.. . +.... ...+..++|||||++|+..+.+
T Consensus 18 ~v~~l~~sp~g~~las~~~--------D~--~i~iw~~~~~~~~~~~~~~~~h----~~~v~~~~~sp~g~~l~s~s~D- 82 (345)
T 3fm0_A 18 RCWFLAWNPAGTLLASCGG--------DR--RIRIWGTEGDSWICKSVLSEGH----QRTVRKVAWSPCGNYLASASFD- 82 (345)
T ss_dssp CEEEEEECTTSSCEEEEET--------TS--CEEEEEEETTEEEEEEEECSSC----SSCEEEEEECTTSSEEEEEETT-
T ss_pred cEEEEEECCCCCEEEEEcC--------CC--eEEEEEcCCCcceeeeeecccc----CCcEEEEEECCCCCEEEEEECC-
Confidence 4778999999999988653 33 4555566665422 1 21111 1237789999999998876531
Q ss_pred CCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccC-CC---ceecCCC-ceEeeeeeC
Q 005240 109 RRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD-GT---AKDFGTP-AVYTAVEPS 183 (706)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~-g~---~~~lt~~-~~~~~~~~S 183 (706)
+.+.++++. +. ...+... ..+..++|+
T Consensus 83 ------------------------------------------------~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~s 114 (345)
T 3fm0_A 83 ------------------------------------------------ATTCIWKKNQDDFECVTTLEGHENEVKSVAWA 114 (345)
T ss_dssp ------------------------------------------------SCEEEEEECCC-EEEEEEECCCSSCEEEEEEC
T ss_pred ------------------------------------------------CcEEEEEccCCCeEEEEEccCCCCCceEEEEe
Confidence 334445552 22 2334333 678899999
Q ss_pred CCCcEEEEEeeccCcccccccccccceEEEEecCCCee-EEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEe
Q 005240 184 PDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEA 262 (706)
Q Consensus 184 pDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~ 262 (706)
|||++|+..+.+ ..|.+|++..+.. ..+....... ..+..+.|+|+++. |+...
T Consensus 115 p~~~~l~s~s~D-------------~~v~iwd~~~~~~~~~~~~~~~h~----------~~v~~~~~~p~~~~-l~s~s- 169 (345)
T 3fm0_A 115 PSGNLLATCSRD-------------KSVWVWEVDEEDEYECVSVLNSHT----------QDVKHVVWHPSQEL-LASAS- 169 (345)
T ss_dssp TTSSEEEEEETT-------------SCEEEEEECTTSCEEEEEEECCCC----------SCEEEEEECSSSSC-EEEEE-
T ss_pred CCCCEEEEEECC-------------CeEEEEECCCCCCeEEEEEecCcC----------CCeEEEEECCCCCE-EEEEe-
Confidence 999999866544 3799999975432 2221111110 12447899999986 55332
Q ss_pred ccCCCCccccCccceeeeecCCCCCCCCc---eEEeecccccccceecCCCceEEEEeeccccceEEEEEcCC
Q 005240 263 QDRGDANVEVSPRDIIYTQPAEPAEGEKP---EILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPG 332 (706)
Q Consensus 263 ~~~~~~~~~~~~~~~l~~~d~~~~~~~~~---~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~ 332 (706)
.+ ..|.+++. ..++. ..+..+...+..+.|+|||+.|+..+. ++..+||.....
T Consensus 170 ~d-----------~~i~~w~~---~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~--D~~v~iW~~~~~ 226 (345)
T 3fm0_A 170 YD-----------DTVKLYRE---EEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSD--DRTVRIWRQYLP 226 (345)
T ss_dssp TT-----------SCEEEEEE---ETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEET--TSCEEEEEEECT
T ss_pred CC-----------CcEEEEEe---cCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeC--CCeEEEeccccC
Confidence 11 23666766 33332 234455677889999999999887653 356778876443
|
| >4e15_A Kynurenine formamidase; alpha/beta hydrolase fold, hydrolase-hydrolase inhibitor COM; HET: SEB; 1.50A {Drosophila melanogaster} PDB: 4e14_A* 4e11_A | Back alignment and structure |
|---|
Probab=99.52 E-value=3.8e-14 Score=144.69 Aligned_cols=166 Identities=14% Similarity=0.159 Sum_probs=119.1
Q ss_pred ceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEE
Q 005240 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 560 (706)
Q Consensus 481 ~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~ 560 (706)
..+.+.|. +..+...+|.|.+- .++.|+||++|||++.. +....+ ...++.|+++||+|+.
T Consensus 57 ~~~~i~y~---~~~~~~~~~~p~~~----~~~~p~vv~~HGgg~~~--------~~~~~~----~~~~~~l~~~G~~v~~ 117 (303)
T 4e15_A 57 TVDHLRYG---EGRQLVDVFYSEKT----TNQAPLFVFVHGGYWQE--------MDMSMS----CSIVGPLVRRGYRVAV 117 (303)
T ss_dssp EEEEEECS---STTCEEEEEECTTC----CTTCCEEEEECCSTTTS--------CCGGGS----CTTHHHHHHTTCEEEE
T ss_pred ceeeeccC---CCCcEEEEEecCCC----CCCCCEEEEECCCcCcC--------CChhHH----HHHHHHHHhCCCEEEE
Confidence 34555555 33456678888742 22479999999986532 111111 2356788899999999
Q ss_pred cCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHc-CCCCCCcEEEEEechHHHHHHHHHHhCCC-------ceeEEEe
Q 005240 561 GPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRR-GVADPSRIAVGGHSYGAFMTAHLLAHAPH-------LFCCGIA 632 (706)
Q Consensus 561 ~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~-~~id~~~i~i~G~S~GG~~a~~~~~~~p~-------~~~a~v~ 632 (706)
+++++..+ . .....+.|+.++++|+.+. ..++++||+|+|||+||++++.++.+.+. +++++++
T Consensus 118 ~d~r~~~~---~-----~~~~~~~d~~~~~~~l~~~~~~~~~~~i~l~G~S~GG~la~~~a~~~~~~~~p~~~~v~~~v~ 189 (303)
T 4e15_A 118 MDYNLCPQ---V-----TLEQLMTQFTHFLNWIFDYTEMTKVSSLTFAGHXAGAHLLAQILMRPNVITAQRSKMVWALIF 189 (303)
T ss_dssp ECCCCTTT---S-----CHHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEETHHHHHHGGGGGCTTTSCHHHHHTEEEEEE
T ss_pred ecCCCCCC---C-----ChhHHHHHHHHHHHHHHHHhhhcCCCeEEEEeecHHHHHHHHHHhccccccCcccccccEEEE
Confidence 88864422 1 2355688999999999873 33568999999999999999999987542 7999999
Q ss_pred ccCCCCCCC-----------------------CCc-----------c----------------chHHHHHHHHHhCCCcE
Q 005240 633 RSGSYNKTL-----------------------TPF-----------G----------------FQAERFFDALKGHGALS 662 (706)
Q Consensus 633 ~~~~~d~~~-----------------------~~~-----------~----------------~~~~~~~~~l~~~~~~~ 662 (706)
.+|.++... .|. . -+..+++++|+..|.++
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~P~lii~G~~D~~v~~~~~~~~~~~l~~~g~~~ 269 (303)
T 4e15_A 190 LCGVYDLRELSNLESVNPKNILGLNERNIESVSPMLWEYTDVTVWNSTKIYVVAAEHDSTTFIEQSRHYADVLRKKGYKA 269 (303)
T ss_dssp ESCCCCCHHHHTCTTTSGGGTTCCCTTTTTTTCGGGCCCCCGGGGTTSEEEEEEEEESCHHHHHHHHHHHHHHHHHTCCE
T ss_pred EeeeeccHhhhcccccchhhhhcCCHHHHHHcCchhhcccccccCCCCCEEEEEeCCCCCCchHHHHHHHHHHHHCCCce
Confidence 999876310 011 0 02238999999999999
Q ss_pred EEEEeCCCCcc
Q 005240 663 RLVLLPFEHHV 673 (706)
Q Consensus 663 ~~~~~~~~~H~ 673 (706)
+++++|+++|.
T Consensus 270 ~~~~~~g~~H~ 280 (303)
T 4e15_A 270 SFTLFKGYDHF 280 (303)
T ss_dssp EEEEEEEEETT
T ss_pred EEEEeCCCCch
Confidence 99999999994
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.6e-12 Score=138.60 Aligned_cols=255 Identities=11% Similarity=0.121 Sum_probs=148.2
Q ss_pred ceeEeecCCCCCCCCe-eeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCC----C-ceeeccc
Q 005240 6 GIGIHRLLPDDSLGPE-KEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAET----G-EAKPLFE 79 (706)
Q Consensus 6 ~~~~~~~~~~~~~g~~-~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~----g-~~~~lt~ 79 (706)
.|.|+++.. +.. +.+..+.....+..+.|||||++||.... + ..|.++++.+ . ....+..
T Consensus 46 ~v~iw~~~~----~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--------d--g~v~vw~~~~~~~~~~~~~~~~~ 111 (416)
T 2pm9_A 46 SLELWSLLA----ADSEKPIASLQVDSKFNDLDWSHNNKIIAGALD--------N--GSLELYSTNEANNAINSMARFSN 111 (416)
T ss_dssp CCEEEESSS----GGGCSCSCCCCCSSCEEEEEECSSSSCEEEEES--------S--SCEEEECCSSTTSCCCEEEECCC
T ss_pred eEEEEEccC----CCCCcEEEEEecCCceEEEEECCCCCeEEEEcc--------C--CeEEEeecccccccccchhhccC
Confidence 588999976 432 23333334446889999999999988653 3 4566667665 2 3333432
Q ss_pred CCCccccccccceEEecC-CcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccce
Q 005240 80 SPDICLNAVFGSFVWVNN-STLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQ 158 (706)
Q Consensus 80 ~~~~~~~~~~~~~~wSpD-g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 158 (706)
+.. .+..+.|+|| +++|+..+.+ +.
T Consensus 112 h~~-----~v~~~~~~~~~~~~l~s~~~d-------------------------------------------------g~ 137 (416)
T 2pm9_A 112 HSS-----SVKTVKFNAKQDNVLASGGNN-------------------------------------------------GE 137 (416)
T ss_dssp SSS-----CCCEEEECSSSTTBEEEECSS-------------------------------------------------SC
T ss_pred Ccc-----ceEEEEEcCCCCCEEEEEcCC-------------------------------------------------Ce
Confidence 332 3778999999 7776665321 45
Q ss_pred EEEEccC-CC------c-eec---CCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEccc
Q 005240 159 LVLGSLD-GT------A-KDF---GTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCD 226 (706)
Q Consensus 159 l~~~~l~-g~------~-~~l---t~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~ 226 (706)
|.++++. ++ . ..+ ... ..+..++|+|++..++++.... ..|.+|++.+++......
T Consensus 138 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------------g~v~iwd~~~~~~~~~~~ 205 (416)
T 2pm9_A 138 IFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSS------------NFASIWDLKAKKEVIHLS 205 (416)
T ss_dssp EEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSS------------SCEEEEETTTTEEEEEEC
T ss_pred EEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCC------------CCEEEEECCCCCcceEEe
Confidence 6666773 33 1 111 112 5678999999954444444332 379999998765443333
Q ss_pred CCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCC-Cc-eEEe-eccccccc
Q 005240 227 LPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGE-KP-EILH-KLDLRFRS 303 (706)
Q Consensus 227 ~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~~-~~l~-~~~~~~~~ 303 (706)
....... ....+..+.|+|++.. +++....++.. ..|.++|+ ..+ .+ ..+. .....+..
T Consensus 206 ~~~~~~~------~~~~v~~~~~~~~~~~-~l~~~~~d~~~--------~~i~~~d~---~~~~~~~~~~~~~~~~~v~~ 267 (416)
T 2pm9_A 206 YTSPNSG------IKQQLSVVEWHPKNST-RVATATGSDND--------PSILIWDL---RNANTPLQTLNQGHQKGILS 267 (416)
T ss_dssp CCCCSSC------CCCCEEEEEECSSCTT-EEEEEECCSSS--------CCCCEEET---TSTTSCSBCCCSCCSSCEEE
T ss_pred ccccccc------cCCceEEEEECCCCCC-EEEEEECCCCC--------ceEEEEeC---CCCCCCcEEeecCccCceeE
Confidence 2211000 0022457899999976 43333222111 14778887 333 33 3344 46678889
Q ss_pred ceecC-CCceEEEEeeccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCC-CEEEEe
Q 005240 304 VSWCD-DSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTG-TNVIAK 370 (706)
Q Consensus 304 ~~wsp-Dg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~ 370 (706)
+.|+| |+..|+..+. ...|.++|+.++ +....+..... ....+.|+||| +.|+..
T Consensus 268 ~~~s~~~~~~l~s~~~----dg~v~~wd~~~~--~~~~~~~~~~~------~v~~~~~s~~~~~~l~s~ 324 (416)
T 2pm9_A 268 LDWCHQDEHLLLSSGR----DNTVLLWNPESA--EQLSQFPARGN------WCFKTKFAPEAPDLFACA 324 (416)
T ss_dssp EEECSSCSSCEEEEES----SSEEEEECSSSC--CEEEEEECSSS------CCCCEEECTTCTTEEEEC
T ss_pred EEeCCCCCCeEEEEeC----CCCEEEeeCCCC--ccceeecCCCC------ceEEEEECCCCCCEEEEE
Confidence 99999 8888887652 235777888774 23322222111 23347899999 555544
|
| >3c8d_A Enterochelin esterase; alpha-beta-alpha sandwich, IROD, iron aquisition, structural genomics, PSI-2, protein structure initiative; HET: CIT; 1.80A {Shigella flexneri 2a str} SCOP: b.1.18.20 c.69.1.2 PDB: 2b20_A 3c87_A* 3c8h_A 3mga_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=5.5e-14 Score=148.69 Aligned_cols=192 Identities=13% Similarity=0.018 Sum_probs=127.0
Q ss_pred CceEEEEEEcc-CCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeE-
Q 005240 480 LQKEMIKYQRK-DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFA- 557 (706)
Q Consensus 480 ~~~~~~~~~~~-dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~- 557 (706)
.+.+.+++.+. .|.++..++|+|++++ . .++|+|+++||+.+. ... .....+..|++.|++
T Consensus 166 G~v~~~~~~S~~~g~~~~~~vy~P~~~~-~--~~~PvlvllHG~~~~-------------~~~-~~~~~~~~l~~~g~~~ 228 (403)
T 3c8d_A 166 IPAKEIIWKSERLKNSRRVWIFTTGDVT-A--EERPLAVLLDGEFWA-------------QSM-PVWPVLTSLTHRQQLP 228 (403)
T ss_dssp SCCEEEEEEETTTTEEEEEEEEEC--------CCCCEEEESSHHHHH-------------HTS-CCHHHHHHHHHTTSSC
T ss_pred CceEEEEEEccccCCcEEEEEEeCCCCC-C--CCCCEEEEeCCHHHh-------------hcC-cHHHHHHHHHHcCCCC
Confidence 46678888875 6789999999999864 2 259999999996321 110 112346778888864
Q ss_pred ---EEEcCCCCcCCCCCCCCc-hhhHHHHHHHHHHHHHHHHHcC--CCCCCcEEEEEechHHHHHHHHHHhCCCceeEEE
Q 005240 558 ---VLAGPSIPIIGEGDKLPN-DRFVEQLVSSAEAAVEEVVRRG--VADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGI 631 (706)
Q Consensus 558 ---v~~~~~~~~~g~g~~~~~-~~~~~~~~~D~~~~~~~l~~~~--~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v 631 (706)
|+.+++++..++...+.. ..+.+...+ +++.++.++. .+|+++++|+|+||||++|++++.++|++|++++
T Consensus 229 p~iVV~~d~~~~~~r~~~~~~~~~~~~~l~~---el~~~i~~~~~~~~d~~~~~l~G~S~GG~~al~~a~~~p~~f~~~~ 305 (403)
T 3c8d_A 229 PAVYVLIDAIDTTHRAHELPCNADFWLAVQQ---ELLPLVKVIAPFSDRADRTVVAGQSFGGLSALYAGLHWPERFGCVL 305 (403)
T ss_dssp SCEEEEECCCSHHHHHHHSSSCHHHHHHHHH---THHHHHHHHSCCCCCGGGCEEEEETHHHHHHHHHHHHCTTTCCEEE
T ss_pred CeEEEEECCCCCccccccCCChHHHHHHHHH---HHHHHHHHHCCCCCCCCceEEEEECHHHHHHHHHHHhCchhhcEEE
Confidence 777666542111111111 122222223 4456666643 2688999999999999999999999999999999
Q ss_pred eccCCCCCCC----------------------CCcc-----------chHHHHHHHHHhCCCcEEEEEeCCCCccCCCcc
Q 005240 632 ARSGSYNKTL----------------------TPFG-----------FQAERFFDALKGHGALSRLVLLPFEHHVYAARE 678 (706)
Q Consensus 632 ~~~~~~d~~~----------------------~~~~-----------~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~ 678 (706)
+.+|.+++.. .+.. -+..+|+++|+++|+++++.+||| +|.+.
T Consensus 306 ~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~~D~~~~~~~~~l~~~L~~~G~~v~~~~~~G-gH~~~--- 381 (403)
T 3c8d_A 306 SQSGSYWWPHRGGQQEGVLLEKLKAGEVSAEGLRIVLEAGIREPMIMRANQALYAQLHPIKESIFWRQVDG-GHDAL--- 381 (403)
T ss_dssp EESCCTTTTCTTSSSCCHHHHHHHTTSSCCCSCEEEEEEESSCHHHHHHHHHHHHHTGGGTTSEEEEEESC-CSCHH---
T ss_pred EeccccccCCCCCCcHHHHHHHHHhccccCCCceEEEEeeCCCchhHHHHHHHHHHHHhCCCCEEEEEeCC-CCCHH---
Confidence 9999875321 0100 023489999999999999999999 59753
Q ss_pred cHHHHHHHHHHHHHHHh
Q 005240 679 NVMHVIWETDRWLQKYC 695 (706)
Q Consensus 679 ~~~~~~~~~~~f~~~~l 695 (706)
.+...+..++.||.+.+
T Consensus 382 ~w~~~l~~~l~~l~~~~ 398 (403)
T 3c8d_A 382 CWRGGLMQGLIDLWQPL 398 (403)
T ss_dssp HHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHhccc
Confidence 24455667777776654
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=99.52 E-value=7.4e-12 Score=130.05 Aligned_cols=226 Identities=12% Similarity=0.041 Sum_probs=134.4
Q ss_pred cccceee-----CC-CCCeEEEEeeccccccccCCceeEEEEEcCCCc-------e-eecccCCCccccccccceEEecC
Q 005240 32 KINFVSW-----SP-DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-------A-KPLFESPDICLNAVFGSFVWVNN 97 (706)
Q Consensus 32 ~~~~~~~-----SP-DG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~-------~-~~lt~~~~~~~~~~~~~~~wSpD 97 (706)
.+..+.| +| ||+.||..+. ++...| +++..++ . ..+..+.. .+..+.|+||
T Consensus 23 ~V~~~~~~~s~~~~~d~~~l~sgs~--------D~~v~i--Wd~~~~~~~~~~~~~~~~l~~h~~-----~V~~~~~~~~ 87 (343)
T 2xzm_R 23 WVTSIVAGFSQKENEDSPVLISGSR--------DKTVMI--WKLYEEEQNGYFGIPHKALTGHNH-----FVSDLALSQE 87 (343)
T ss_dssp CEEEEEECCCSSTTCCCCEEEEEET--------TSCEEE--EEECSSCCSSBSEEEEEEECCCSS-----CEEEEEECSS
T ss_pred hhhheeeEEEeecCCCCCEEEEEcC--------CCEEEE--EECCcCCcccccccccchhccCCC-----ceEEEEECCC
Confidence 4778888 77 9999887653 444444 4554322 1 22222222 3778999999
Q ss_pred CcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCC-ceecCCC-
Q 005240 98 STLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGTP- 174 (706)
Q Consensus 98 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~-~~~lt~~- 174 (706)
+++|+..+.+ +.|.++|+ +++ ...+...
T Consensus 88 ~~~l~s~s~D-------------------------------------------------~~v~lwd~~~~~~~~~~~~h~ 118 (343)
T 2xzm_R 88 NCFAISSSWD-------------------------------------------------KTLRLWDLRTGTTYKRFVGHQ 118 (343)
T ss_dssp TTEEEEEETT-------------------------------------------------SEEEEEETTSSCEEEEEECCC
T ss_pred CCEEEEEcCC-------------------------------------------------CcEEEEECCCCcEEEEEcCCC
Confidence 9988765421 56778888 553 3444444
Q ss_pred ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCC
Q 005240 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (706)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~ 254 (706)
..+..++|+|||++|+..+.. ..|.+|++.+.....+....... ..+..+.|+|++.
T Consensus 119 ~~v~~v~~sp~~~~l~s~~~d-------------~~i~~wd~~~~~~~~~~~~~~~~----------~~v~~~~~~~~~~ 175 (343)
T 2xzm_R 119 SEVYSVAFSPDNRQILSAGAE-------------REIKLWNILGECKFSSAEKENHS----------DWVSCVRYSPIMK 175 (343)
T ss_dssp SCEEEEEECSSTTEEEEEETT-------------SCEEEEESSSCEEEECCTTTSCS----------SCEEEEEECCCCC
T ss_pred CcEEEEEECCCCCEEEEEcCC-------------CEEEEEeccCCceeeeecccCCC----------ceeeeeeeccccc
Confidence 678899999999999765543 37999999865544433221110 1234678888873
Q ss_pred c---------eEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccccceE
Q 005240 255 S---------TLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTR 325 (706)
Q Consensus 255 ~---------~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~ 325 (706)
. .|+ ... ....|.+||. .......+..+...+..+.|+|||+.|+..+. ...
T Consensus 176 ~~~~~~~~~~~l~-s~~-----------~d~~i~iwd~---~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~----dg~ 236 (343)
T 2xzm_R 176 SANKVQPFAPYFA-SVG-----------WDGRLKVWNT---NFQIRYTFKAHESNVNHLSISPNGKYIATGGK----DKK 236 (343)
T ss_dssp SCSCCCSSCCEEE-EEE-----------TTSEEEEEET---TTEEEEEEECCSSCEEEEEECTTSSEEEEEET----TCE
T ss_pred cccccCCCCCEEE-EEc-----------CCCEEEEEcC---CCceeEEEcCccccceEEEECCCCCEEEEEcC----CCe
Confidence 2 122 211 1235777876 33333345556778889999999999887652 234
Q ss_pred EEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEee
Q 005240 326 TWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 326 l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 371 (706)
|.++|+.... .+....... .....+.|+|++.+++...
T Consensus 237 v~iwd~~~~~-~~~~~~~~~-------~~v~~v~~sp~~~~la~~~ 274 (343)
T 2xzm_R 237 LLIWDILNLT-YPQREFDAG-------STINQIAFNPKLQWVAVGT 274 (343)
T ss_dssp EEEEESSCCS-SCSEEEECS-------SCEEEEEECSSSCEEEEEE
T ss_pred EEEEECCCCc-ccceeecCC-------CcEEEEEECCCCCEEEEEC
Confidence 6666663321 122222111 0122477899998876543
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=99.52 E-value=7.3e-12 Score=129.92 Aligned_cols=275 Identities=9% Similarity=0.058 Sum_probs=163.4
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~ 111 (706)
.+....|||||++|+..+. + ..|.++|+.+++.......... .+..+.|+|||++|+..+.+
T Consensus 57 ~v~~~~~s~d~~~l~s~s~--------D--g~v~iWd~~~~~~~~~~~~~~~----~v~~~~~s~~~~~l~s~~~d---- 118 (340)
T 1got_B 57 KIYAMHWGTDSRLLLSASQ--------D--GKLIIWDSYTTNKVHAIPLRSS----WVMTCAYAPSGNYVACGGLD---- 118 (340)
T ss_dssp CEEEEEECTTSSEEEEEET--------T--TEEEEEETTTCCEEEEEECSSS----CEEEEEECTTSSEEEEEETT----
T ss_pred ceEEEEECCCCCEEEEEeC--------C--CcEEEEECCCCCcceEeecCCc----cEEEEEECCCCCEEEEEeCC----
Confidence 5889999999999987642 2 4677788887765433222211 26788999999998876421
Q ss_pred CCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccC-C--Cc---eecCCC-ceEeeeeeCC
Q 005240 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD-G--TA---KDFGTP-AVYTAVEPSP 184 (706)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~-g--~~---~~lt~~-~~~~~~~~Sp 184 (706)
+.+.++++. + .. +.+... ..+..+.|+|
T Consensus 119 ---------------------------------------------~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 153 (340)
T 1got_B 119 ---------------------------------------------NICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD 153 (340)
T ss_dssp ---------------------------------------------CEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEE
T ss_pred ---------------------------------------------CeEEEEECccCCCcceeEEEecCCCccEEEEEECC
Confidence 455666662 2 11 122223 5678889999
Q ss_pred CCcEEEEEeeccCcccccccccccceEEEEecCCCeeE-EcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEec
Q 005240 185 DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR-ELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQ 263 (706)
Q Consensus 185 DG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~ 263 (706)
+++ |+..+.+ ..|.+||+.+++.. .+..+. ..+..+.|+|+++. |+ ....
T Consensus 154 ~~~-l~s~s~d-------------~~i~~wd~~~~~~~~~~~~h~-------------~~v~~~~~~~~~~~-l~-sg~~ 204 (340)
T 1got_B 154 DNQ-IVTSSGD-------------TTCALWDIETGQQTTTFTGHT-------------GDVMSLSLAPDTRL-FV-SGAC 204 (340)
T ss_dssp TTE-EEEEETT-------------SCEEEEETTTTEEEEEECCCS-------------SCEEEEEECTTSSE-EE-EEET
T ss_pred CCc-EEEEECC-------------CcEEEEECCCCcEEEEEcCCC-------------CceEEEEECCCCCE-EE-EEeC
Confidence 986 4433322 37999999866543 332221 12447899999985 43 2211
Q ss_pred cCCCCccccCccceeeeecCCCCCCCCc-eEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeee
Q 005240 264 DRGDANVEVSPRDIIYTQPAEPAEGEKP-EILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLF 342 (706)
Q Consensus 264 ~~~~~~~~~~~~~~l~~~d~~~~~~~~~-~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~ 342 (706)
+ ..|.+||+ ..+.. ..+..+...+..+.|+||++.|+..+.+ + .|.++|+.++ +....+
T Consensus 205 d-----------~~v~~wd~---~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d--~--~v~iwd~~~~--~~~~~~ 264 (340)
T 1got_B 205 D-----------ASAKLWDV---REGMCRQTFTGHESDINAICFFPNGNAFATGSDD--A--TCRLFDLRAD--QELMTY 264 (340)
T ss_dssp T-----------SCEEEEET---TTCSEEEEECCCSSCEEEEEECTTSSEEEEEETT--S--CEEEEETTTT--EEEEEE
T ss_pred C-----------CcEEEEEC---CCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCC--C--cEEEEECCCC--cEEEEE
Confidence 1 24788888 44443 3455567788899999999988876522 3 3556666653 222222
Q ss_pred cCcccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeeecccchhhhhhh
Q 005240 343 DRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETA 422 (706)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~ 422 (706)
..... ..+...+.|+|+|++|+..... + .+..+|+.+++.........
T Consensus 265 ~~~~~----~~~v~~~~~s~~g~~l~~g~~d----~-----------------~i~vwd~~~~~~~~~~~~h~------- 312 (340)
T 1got_B 265 SHDNI----ICGITSVSFSKSGRLLLAGYDD----F-----------------NCNVWDALKADRAGVLAGHD------- 312 (340)
T ss_dssp CCTTC----CSCEEEEEECTTSSEEEEEETT----S-----------------EEEEEETTTCCEEEEEECCS-------
T ss_pred ccCCc----ccceEEEEECCCCCEEEEECCC----C-----------------eEEEEEcccCcEeeEeecCC-------
Confidence 11100 0012347789999988776521 1 35566766665433332211
Q ss_pred hhhccCCCceecccCCCEEEEEEecCCCCcEEEEEE
Q 005240 423 VALVFGQGEEDINLNQLKILTSKESKTEITQYHILS 458 (706)
Q Consensus 423 ~~~~~~~~~~~~s~Dg~~l~~~~~~~~~p~~v~~~~ 458 (706)
.....+.|+|||+.|+....+.. |.+||
T Consensus 313 ----~~v~~~~~s~dg~~l~s~s~D~~----i~iWd 340 (340)
T 1got_B 313 ----NRVSCLGVTDDGMAVATGSWDSF----LKIWN 340 (340)
T ss_dssp ----SCEEEEEECTTSSCEEEEETTSC----EEEEC
T ss_pred ----CcEEEEEEcCCCCEEEEEcCCcc----EEecC
Confidence 12234689999987775543332 55553
|
| >3d59_A Platelet-activating factor acetylhydrolase; secreted protein, alpha/beta-hydrolase-fold, LDL-bound, lipoprotein associated phospholipase A2, LP-PLA2; 1.50A {Homo sapiens} PDB: 3d5e_A 3f97_A* 3f98_A 3f9c_A* 3f96_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=9.2e-14 Score=146.81 Aligned_cols=171 Identities=16% Similarity=0.111 Sum_probs=115.1
Q ss_pred CceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCC--------------CCCC---
Q 005240 512 PLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEG--------------DKLP--- 574 (706)
Q Consensus 512 ~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g--------------~~~~--- 574 (706)
++|+||++||++.. .......++.|+++||+|+.++.++..+.. ..+.
T Consensus 97 ~~P~Vv~~HG~~~~---------------~~~~~~~a~~La~~Gy~V~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~~~ 161 (383)
T 3d59_A 97 KYPLVVFSHGLGAF---------------RTLYSAIGIDLASHGFIVAAVEHRDRSASATYYFKDQSAAEIGDKSWLYLR 161 (383)
T ss_dssp CEEEEEEECCTTCC---------------TTTTHHHHHHHHHTTCEEEEECCCSSCSSEEEECSSHHHHHHTCCEEEECC
T ss_pred CCCEEEEcCCCCCC---------------chHHHHHHHHHHhCceEEEEeccCCCCccceeecCCccccccCCceeeecc
Confidence 58999999997421 011235678899999999998877542210 0000
Q ss_pred ---ch-------hhHHHHHHHHHHHHHHHHH--------------------cCCCCCCcEEEEEechHHHHHHHHHHhCC
Q 005240 575 ---ND-------RFVEQLVSSAEAAVEEVVR--------------------RGVADPSRIAVGGHSYGAFMTAHLLAHAP 624 (706)
Q Consensus 575 ---~~-------~~~~~~~~D~~~~~~~l~~--------------------~~~id~~~i~i~G~S~GG~~a~~~~~~~p 624 (706)
.. ........|+..+++++.+ ...+|++||+++|||+||++++.++.+.
T Consensus 162 ~~~g~~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~~~~~~~~~~~~d~~~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~- 240 (383)
T 3d59_A 162 TLKQEEETHIRNEQVRQRAKECSQALSLILDIDHGKPVKNALDLKFDMEQLKDSIDREKIAVIGHSFGGATVIQTLSED- 240 (383)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSCCSCCGGGGTTCEEEEEEEEEEETHHHHHHHHHHHHC-
T ss_pred ccCcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCccccccccccchhhhhccccccceeEEEEChhHHHHHHHHhhC-
Confidence 00 1122346899999999976 4557889999999999999999999888
Q ss_pred CceeEEEeccCCCCCC--------CCCcc--------c-hHHHHHHHHHhCCCcEEEEEeCCCCccCCC-----------
Q 005240 625 HLFCCGIARSGSYNKT--------LTPFG--------F-QAERFFDALKGHGALSRLVLLPFEHHVYAA----------- 676 (706)
Q Consensus 625 ~~~~a~v~~~~~~d~~--------~~~~~--------~-~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~----------- 676 (706)
.+|+|+|+.+|..... ..|.. . ...+..++|...+.+.++++|+|++|.+..
T Consensus 241 ~~v~a~v~~~~~~~p~~~~~~~~i~~P~Lii~g~~D~~~~~~~~~~~l~~~~~~~~~~~~~g~~H~~~~d~~~~~~~~~~ 320 (383)
T 3d59_A 241 QRFRCGIALDAWMFPLGDEVYSRIPQPLFFINSEYFQYPANIIKMKKCYSPDKERKMITIRGSVHQNFADFTFATGKIIG 320 (383)
T ss_dssp TTCCEEEEESCCCTTCCGGGGGSCCSCEEEEEETTTCCHHHHHHHHTTCCTTSCEEEEEETTCCGGGGSGGGGSSCHHHH
T ss_pred CCccEEEEeCCccCCCchhhhccCCCCEEEEecccccchhhHHHHHHHHhcCCceEEEEeCCCcCCCcccHhhhhhHHhh
Confidence 4799999998854211 11211 1 111344566667789999999999998631
Q ss_pred -------cccH----HHHHHHHHHHHHHHhccC
Q 005240 677 -------RENV----MHVIWETDRWLQKYCLSN 698 (706)
Q Consensus 677 -------~~~~----~~~~~~~~~f~~~~l~~~ 698 (706)
..+. ....+.+++||+++|+..
T Consensus 321 ~~~~~~g~~~~~~~~~~~~~~~~~Fl~~~L~~~ 353 (383)
T 3d59_A 321 HMLKLKGDIDSNVAIDLSNKASLAFLQKHLGLH 353 (383)
T ss_dssp HHTTSSCSSCHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred hhhcccCCcCHHHHHHHHHHHHHHHHHHHcCCc
Confidence 1112 233357999999999754
|
| >4fbl_A LIPS lipolytic enzyme; thermostable, structural genomics, enzyme function initiativ structural proteomics in europe, spine; HET: SPD; 1.99A {Unidentified} PDB: 4fbm_A | Back alignment and structure |
|---|
Probab=99.50 E-value=2.2e-13 Score=137.36 Aligned_cols=140 Identities=14% Similarity=0.173 Sum_probs=103.1
Q ss_pred hHHHHHHHCCeEEEEcCCCCcCCCCCCCCc--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhC
Q 005240 546 TSSLIFLARRFAVLAGPSIPIIGEGDKLPN--DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHA 623 (706)
Q Consensus 546 ~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~--~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~ 623 (706)
.+++.|+++||.|+.++.+ |+|.+... .....+.+.|+.+++++|.+. .+++.|+||||||.+++.++.++
T Consensus 69 ~la~~La~~Gy~Via~Dl~---GhG~S~~~~~~~~~~~~~~d~~~~~~~l~~~----~~~v~lvG~S~GG~ia~~~a~~~ 141 (281)
T 4fbl_A 69 FLAEGFARAGYTVATPRLT---GHGTTPAEMAASTASDWTADIVAAMRWLEER----CDVLFMTGLSMGGALTVWAAGQF 141 (281)
T ss_dssp HHHHHHHHTTCEEEECCCT---TSSSCHHHHHTCCHHHHHHHHHHHHHHHHHH----CSEEEEEEETHHHHHHHHHHHHS
T ss_pred HHHHHHHHCCCEEEEECCC---CCCCCCccccCCCHHHHHHHHHHHHHHHHhC----CCeEEEEEECcchHHHHHHHHhC
Confidence 4678899999999996665 66766321 223456688999999999765 36899999999999999999999
Q ss_pred CCceeEEEeccCCCCCCC-----------CC-----------------ccc-----------------------------
Q 005240 624 PHLFCCGIARSGSYNKTL-----------TP-----------------FGF----------------------------- 646 (706)
Q Consensus 624 p~~~~a~v~~~~~~d~~~-----------~~-----------------~~~----------------------------- 646 (706)
|++++++|+.+|...... .+ ..+
T Consensus 142 p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~ 221 (281)
T 4fbl_A 142 PERFAGIMPINAALRMESPDLAALAFNPDAPAELPGIGSDIKAEGVKELAYPVTPVPAIKHLITIGAVAEMLLPRVKCPA 221 (281)
T ss_dssp TTTCSEEEEESCCSCCCCHHHHHHHTCTTCCSEEECCCCCCSSTTCCCCCCSEEEGGGHHHHHHHHHHHHHHGGGCCSCE
T ss_pred chhhhhhhcccchhcccchhhHHHHHhHhhHHhhhcchhhhhhHHHHHhhhccCchHHHHHHHHhhhhccccccccCCCE
Confidence 999999999998643210 00 000
Q ss_pred --------------hHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHH
Q 005240 647 --------------QAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKY 694 (706)
Q Consensus 647 --------------~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~~~~ 694 (706)
..+++++++. +.+++++++|+++|.+.....+..+.+.+.+||++|
T Consensus 222 Lii~G~~D~~v~~~~~~~l~~~l~--~~~~~l~~~~~~gH~~~~e~~~e~v~~~i~~FL~~H 281 (281)
T 4fbl_A 222 LIIQSREDHVVPPHNGELIYNGIG--STEKELLWLENSYHVATLDNDKELILERSLAFIRKH 281 (281)
T ss_dssp EEEEESSCSSSCTHHHHHHHHHCC--CSSEEEEEESSCCSCGGGSTTHHHHHHHHHHHHHTC
T ss_pred EEEEeCCCCCcCHHHHHHHHHhCC--CCCcEEEEECCCCCcCccccCHHHHHHHHHHHHHhC
Confidence 0003333332 356799999999998765556778899999999986
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.3e-11 Score=126.87 Aligned_cols=225 Identities=9% Similarity=0.071 Sum_probs=135.1
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCC---c-eeecccCCCccccccccceEEecCCcEEEEEecC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETG---E-AKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPS 107 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g---~-~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~ 107 (706)
.+..++|||++..++++... ++...||-+..... . .+.+..+.. .+..+.|+|||++|+..+.+
T Consensus 19 ~V~~l~~~~~~~~~l~s~s~-------D~~v~~W~~~~~~~~~~~~~~~~~~h~~-----~v~~~~~s~dg~~l~s~s~D 86 (319)
T 3frx_A 19 WVTSLATSAGQPNLLLSASR-------DKTLISWKLTGDDQKFGVPVRSFKGHSH-----IVQDCTLTADGAYALSASWD 86 (319)
T ss_dssp CEEEEEECSSCTTEEEEEET-------TSEEEEEEEEEETTEEEEEEEEEECCSS-----CEEEEEECTTSSEEEEEETT
T ss_pred eEEEEEccCCCccEEEEecC-------CccEEEecCCCCCccccccceEEeCCcc-----cEEEEEECCCCCEEEEEeCC
Confidence 57889999987444344322 44444554332111 1 122222222 26788999999998876421
Q ss_pred CCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCC-ceecCCC-ceEeeeeeCC
Q 005240 108 SRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGTP-AVYTAVEPSP 184 (706)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~-~~~lt~~-~~~~~~~~Sp 184 (706)
+.|.++|+ +|+ .+.+... ..+..++|+|
T Consensus 87 -------------------------------------------------~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~ 117 (319)
T 3frx_A 87 -------------------------------------------------KTLRLWDVATGETYQRFVGHKSDVMSVDIDK 117 (319)
T ss_dssp -------------------------------------------------SEEEEEETTTTEEEEEEECCSSCEEEEEECT
T ss_pred -------------------------------------------------CEEEEEECCCCCeeEEEccCCCcEEEEEEcC
Confidence 57788888 563 3445444 6788999999
Q ss_pred CCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCC-----ceEEE
Q 005240 185 DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP-----STLYW 259 (706)
Q Consensus 185 DG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~-----~~l~~ 259 (706)
+++.|+..+.+ ..|.+|++.+.....+..... .+..+.|+|++. ..|+
T Consensus 118 ~~~~l~s~s~D-------------~~i~vwd~~~~~~~~~~~h~~-------------~v~~~~~~~~~~~~~~~~~l~- 170 (319)
T 3frx_A 118 KASMIISGSRD-------------KTIKVWTIKGQCLATLLGHND-------------WVSQVRVVPNEKADDDSVTII- 170 (319)
T ss_dssp TSCEEEEEETT-------------SCEEEEETTSCEEEEECCCSS-------------CEEEEEECCC------CCEEE-
T ss_pred CCCEEEEEeCC-------------CeEEEEECCCCeEEEEeccCC-------------cEEEEEEccCCCCCCCccEEE-
Confidence 99998765543 379999998877666543321 133567777543 1122
Q ss_pred EEeccCCCCccccCccceeeeecCCCCCCCCce-EEeecccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCc
Q 005240 260 VEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPE-ILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAP 338 (706)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~-~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~ 338 (706)
... ....|.+||+ ...+.. .+..+...+..+.|+|||+.|+..+. ...|.++|+.++ +.
T Consensus 171 s~~-----------~d~~i~~wd~---~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~----dg~i~iwd~~~~--~~ 230 (319)
T 3frx_A 171 SAG-----------NDKMVKAWNL---NQFQIEADFIGHNSNINTLTASPDGTLIASAGK----DGEIMLWNLAAK--KA 230 (319)
T ss_dssp EEE-----------TTSCEEEEET---TTTEEEEEECCCCSCEEEEEECTTSSEEEEEET----TCEEEEEETTTT--EE
T ss_pred EEe-----------CCCEEEEEEC---CcchhheeecCCCCcEEEEEEcCCCCEEEEEeC----CCeEEEEECCCC--cE
Confidence 211 1124778888 443332 34456778889999999998887652 234667777763 22
Q ss_pred eeeecCcccccccCCCCCceEeccCCCEEEEee
Q 005240 339 RVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 339 ~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 371 (706)
....... . ....+.|+|||.+++...
T Consensus 231 ~~~~~~~-~------~v~~~~~sp~~~~la~~~ 256 (319)
T 3frx_A 231 MYTLSAQ-D------EVFSLAFSPNRYWLAAAT 256 (319)
T ss_dssp EEEEECC-S------CEEEEEECSSSSEEEEEE
T ss_pred EEEecCC-C------cEEEEEEcCCCCEEEEEc
Confidence 2222111 1 123478999999887764
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.50 E-value=6.4e-12 Score=131.48 Aligned_cols=300 Identities=12% Similarity=0.027 Sum_probs=157.3
Q ss_pred CCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccc
Q 005240 59 SCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMT 138 (706)
Q Consensus 59 ~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (706)
++.-.+|.+|.++|+.++++.... ..+..++|||||++||+........
T Consensus 26 ~~~i~~~~~d~~~g~~~~~~~~~~----~~p~~l~~spdg~~l~~~~~~~~~~--------------------------- 74 (361)
T 3scy_A 26 SKGIYTFRFNEETGESLPLSDAEV----ANPSYLIPSADGKFVYSVNEFSKDQ--------------------------- 74 (361)
T ss_dssp CCEEEEEEEETTTCCEEEEEEEEC----SCCCSEEECTTSSEEEEEECCSSTT---------------------------
T ss_pred CCCEEEEEEeCCCCCEEEeecccC----CCCceEEECCCCCEEEEEEccCCCC---------------------------
Confidence 344567777778888877754311 1256789999999988875321000
Q ss_pred hhccCCchhhhhhhhcccceEEEEccC-CCceecCCC----ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEE
Q 005240 139 DNLLKDEYDESLFDYYTTAQLVLGSLD-GTAKDFGTP----AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQV 213 (706)
Q Consensus 139 ~~~~~~~~d~~~~~~~~~~~l~~~~l~-g~~~~lt~~----~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~ 213 (706)
..-.+|.++.+ |+.+.+... .....+++ ||++|++..... ..+.+
T Consensus 75 ----------------~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~------------~~v~~ 124 (361)
T 3scy_A 75 ----------------AAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSG------------GSITV 124 (361)
T ss_dssp ----------------CEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTT------------TEEEE
T ss_pred ----------------CcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCC------------CEEEE
Confidence 11345666654 655554322 34455666 999887765432 47889
Q ss_pred EecCC-CeeEEccc---CCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCC
Q 005240 214 WTTDG-KLVRELCD---LPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGE 289 (706)
Q Consensus 214 ~~~~~-~~~~~l~~---~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~ 289 (706)
|+++. +.+..+.. ..+....+ ..........+.|+|||+. |++.. . + .+.+++++++. .++
T Consensus 125 ~~~~~~g~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~spdg~~-l~~~~-~--~--------~~~v~v~~~~~-~~~ 189 (361)
T 3scy_A 125 FPIGQDGALLPASDVIEFKGSGPDK--ERQTMPHLHCVRITPDGKY-LLADD-L--G--------TDQIHKFNINP-NAN 189 (361)
T ss_dssp EEBCTTSCBCSCSEEEECCCCCSCT--TTCSSCCEEEEEECTTSSE-EEEEE-T--T--------TTEEEEEEECT-TCC
T ss_pred EEeCCCCcCcccceeEEccCCCCCc--cccCCCcceEEEECCCCCE-EEEEe-C--C--------CCEEEEEEEcC-CCC
Confidence 99873 32222211 11110000 0000011235899999997 66442 1 1 12355665521 232
Q ss_pred ----C-ce------EE-eecccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCc
Q 005240 290 ----K-PE------IL-HKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPM 357 (706)
Q Consensus 290 ----~-~~------~l-~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~ 357 (706)
+ +. .+ .........+.|+|||+.+++.. ..+ ..|++++++++ +...+........ ...+...
T Consensus 190 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~-~~~--~~v~v~~~~~g--~~~~~~~~~~~~~-~~~~~~~ 263 (361)
T 3scy_A 190 ADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLIN-EIG--GTVIAFRYADG--MLDEIQTVAADTV-NAQGSGD 263 (361)
T ss_dssp TTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEE-TTT--CEEEEEEEETT--EEEEEEEEESCSS-CCCCEEE
T ss_pred cccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEc-CCC--CeEEEEEecCC--ceEEeEEEecCCC-CCCCccc
Confidence 2 21 11 12234456789999999887764 222 34566665553 3332211110000 0001124
Q ss_pred eEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeeecccchhhhhhhhhhccCCCceecccC
Q 005240 358 MTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLN 437 (706)
Q Consensus 358 ~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~D 437 (706)
+.|||||++|++..... .+...+|.++.++|+.+.+...... .....+.||||
T Consensus 264 i~~spdg~~l~v~~~~~-----------------~~~i~v~~~~~~~g~~~~~~~~~~g----------~~~~~~~~spd 316 (361)
T 3scy_A 264 IHLSPDGKYLYASNRLK-----------------ADGVAIFKVDETNGTLTKVGYQLTG----------IHPRNFIITPN 316 (361)
T ss_dssp EEECTTSSEEEEEECSS-----------------SCEEEEEEECTTTCCEEEEEEEECS----------SCCCEEEECTT
T ss_pred EEECCCCCEEEEECCCC-----------------CCEEEEEEEcCCCCcEEEeeEecCC----------CCCceEEECCC
Confidence 78999999987765210 0122344555556765544322110 01235789999
Q ss_pred CCEEEEEEecCCCCcEEEEEECCCCceeEee
Q 005240 438 QLKILTSKESKTEITQYHILSWPLKKSSQIT 468 (706)
Q Consensus 438 g~~l~~~~~~~~~p~~v~~~~~~~~~~~~lt 468 (706)
|++|+++.. ....-.+|.+|+++|+.+.+.
T Consensus 317 g~~l~~~~~-~~~~v~v~~~d~~~g~~~~~~ 346 (361)
T 3scy_A 317 GKYLLVACR-DTNVIQIFERDQATGLLTDIK 346 (361)
T ss_dssp SCEEEEEET-TTTEEEEEEECTTTCCEEECS
T ss_pred CCEEEEEEC-CCCCEEEEEEECCCCcEeecc
Confidence 987776543 333345666788888876664
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=1e-11 Score=131.64 Aligned_cols=196 Identities=11% Similarity=0.082 Sum_probs=120.7
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCcc--------------ccccccceEEecC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC--------------LNAVFGSFVWVNN 97 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~--------------~~~~~~~~~wSpD 97 (706)
.+..++|||||++||... + ..+.++++.+++........... ....+..+.||||
T Consensus 66 ~V~~v~fspdg~~la~g~---------~--~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d 134 (393)
T 1erj_A 66 VVCCVKFSNDGEYLATGC---------N--KTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD 134 (393)
T ss_dssp CCCEEEECTTSSEEEEEC---------B--SCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTT
T ss_pred EEEEEEECCCCCEEEEEc---------C--CcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCC
Confidence 578899999999998854 2 34555677766543322111000 0012567899999
Q ss_pred CcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCCc-eecCCC-
Q 005240 98 STLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTA-KDFGTP- 174 (706)
Q Consensus 98 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~-~~lt~~- 174 (706)
|++|+..+.+ +.|.++|+ +++. ..+...
T Consensus 135 g~~l~s~~~d-------------------------------------------------~~i~iwd~~~~~~~~~~~~h~ 165 (393)
T 1erj_A 135 GKFLATGAED-------------------------------------------------RLIRIWDIENRKIVMILQGHE 165 (393)
T ss_dssp SSEEEEEETT-------------------------------------------------SCEEEEETTTTEEEEEECCCS
T ss_pred CCEEEEEcCC-------------------------------------------------CeEEEEECCCCcEEEEEccCC
Confidence 9998876421 56777888 4443 334434
Q ss_pred ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeec-CC
Q 005240 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRA-DK 253 (706)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~sp-dg 253 (706)
..+..++|+|||++|+..+.+ ..|.+||+.+++........ .+...+.|+| |+
T Consensus 166 ~~v~~~~~~p~~~~l~s~s~d-------------~~v~iwd~~~~~~~~~~~~~-------------~~v~~~~~~~~~~ 219 (393)
T 1erj_A 166 QDIYSLDYFPSGDKLVSGSGD-------------RTVRIWDLRTGQCSLTLSIE-------------DGVTTVAVSPGDG 219 (393)
T ss_dssp SCEEEEEECTTSSEEEEEETT-------------SEEEEEETTTTEEEEEEECS-------------SCEEEEEECSTTC
T ss_pred CCEEEEEEcCCCCEEEEecCC-------------CcEEEEECCCCeeEEEEEcC-------------CCcEEEEEECCCC
Confidence 678899999999998765543 37999999876544332221 2244678999 77
Q ss_pred CceEEEEEeccCCCCccccCccceeeeecCCCCCCCCce-EE-------eecccccccceecCCCceEEEEeeccccceE
Q 005240 254 PSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPE-IL-------HKLDLRFRSVSWCDDSLALVNETWYKTSQTR 325 (706)
Q Consensus 254 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~-~l-------~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~ 325 (706)
+. |+.. ..+ ..|.+||+ .++... .+ ..+...+..+.|+|||+.|+..+. ++.
T Consensus 220 ~~-l~~~-s~d-----------~~v~iwd~---~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~--d~~-- 279 (393)
T 1erj_A 220 KY-IAAG-SLD-----------RAVRVWDS---ETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL--DRS-- 279 (393)
T ss_dssp CE-EEEE-ETT-----------SCEEEEET---TTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET--TSE--
T ss_pred CE-EEEE-cCC-----------CcEEEEEC---CCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeC--CCE--
Confidence 64 4422 111 24777887 444432 23 233556788999999998887652 233
Q ss_pred EEEEcCCC
Q 005240 326 TWLVCPGS 333 (706)
Q Consensus 326 l~~~d~~~ 333 (706)
|.++|+.+
T Consensus 280 v~~wd~~~ 287 (393)
T 1erj_A 280 VKLWNLQN 287 (393)
T ss_dssp EEEEEC--
T ss_pred EEEEECCC
Confidence 55555544
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.50 E-value=6.8e-12 Score=146.34 Aligned_cols=222 Identities=12% Similarity=0.096 Sum_probs=144.9
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceee-cccCCCccccccccceEEecCCcEEEEEecCCCC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKP-LFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~-lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~ 110 (706)
.+..++|||||++||.... ...|.++|+.+++..+ +..+.. .+..+.|+|||++|++.+.
T Consensus 15 ~v~~i~~sp~~~~la~~~~----------~g~v~iwd~~~~~~~~~~~~~~~-----~v~~~~~s~~~~~l~~~~~---- 75 (814)
T 3mkq_A 15 RVKGIDFHPTEPWVLTTLY----------SGRVEIWNYETQVEVRSIQVTET-----PVRAGKFIARKNWIIVGSD---- 75 (814)
T ss_dssp CEEEEEECSSSSEEEEEET----------TSEEEEEETTTTEEEEEEECCSS-----CEEEEEEEGGGTEEEEEET----
T ss_pred ceEEEEECCCCCEEEEEeC----------CCEEEEEECCCCceEEEEecCCC-----cEEEEEEeCCCCEEEEEeC----
Confidence 4889999999999998752 2578888988776544 332332 2788999999999988742
Q ss_pred CCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCC-ceecCCC-ceEeeeeeCCCCc
Q 005240 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGTP-AVYTAVEPSPDQK 187 (706)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~-~~~lt~~-~~~~~~~~SpDG~ 187 (706)
.+.|.++++ +|+ ...+... ..+..++|+|||+
T Consensus 76 ---------------------------------------------dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 110 (814)
T 3mkq_A 76 ---------------------------------------------DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKP 110 (814)
T ss_dssp ---------------------------------------------TSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSS
T ss_pred ---------------------------------------------CCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCC
Confidence 157888888 553 4445444 6789999999999
Q ss_pred EEEEEeeccCcccccccccccceEEEEecCCC-eeE-EcccCCCCCCCCcccCccCCCCcceeeec-CCCceEEEEEecc
Q 005240 188 YVLITSMHRPYSYKVPCARFSQKVQVWTTDGK-LVR-ELCDLPPAEDIPVCYNSVREGMRSISWRA-DKPSTLYWVEAQD 264 (706)
Q Consensus 188 ~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~-~l~~~~~~~~~p~~~~~~~~g~~~~~~sp-dg~~~l~~~~~~~ 264 (706)
+|+..+.. ..|.+|+++++ ... .+.... ..+..+.|+| |+.. |+... .
T Consensus 111 ~l~~~~~d-------------g~i~vw~~~~~~~~~~~~~~~~-------------~~v~~~~~~p~~~~~-l~~~~-~- 161 (814)
T 3mkq_A 111 YVLSGSDD-------------LTVKLWNWENNWALEQTFEGHE-------------HFVMCVAFNPKDPST-FASGC-L- 161 (814)
T ss_dssp EEEEEETT-------------SEEEEEEGGGTSEEEEEEECCS-------------SCEEEEEEETTEEEE-EEEEE-T-
T ss_pred EEEEEcCC-------------CEEEEEECCCCceEEEEEcCCC-------------CcEEEEEEEcCCCCE-EEEEe-C-
Confidence 99866543 37999999854 333 332221 1244789999 6654 44331 1
Q ss_pred CCCCccccCccceeeeecCCCCCCCCc-eEEeec-ccccccceecC--CCceEEEEeeccccceEEEEEcCCCCCCCcee
Q 005240 265 RGDANVEVSPRDIIYTQPAEPAEGEKP-EILHKL-DLRFRSVSWCD--DSLALVNETWYKTSQTRTWLVCPGSKDVAPRV 340 (706)
Q Consensus 265 ~~~~~~~~~~~~~l~~~d~~~~~~~~~-~~l~~~-~~~~~~~~wsp--Dg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~ 340 (706)
.+.|.+||+ .++.. ..+... ...+..+.|+| |+..|+.... ...|.++|+.++ +...
T Consensus 162 ----------dg~v~vwd~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~----dg~i~~~d~~~~--~~~~ 222 (814)
T 3mkq_A 162 ----------DRTVKVWSL---GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD----DLTIKIWDYQTK--SCVA 222 (814)
T ss_dssp ----------TSEEEEEET---TCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECT----TSEEEEEETTTT--EEEE
T ss_pred ----------CCeEEEEEC---CCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeC----CCEEEEEECCCC--cEEE
Confidence 124788888 44443 334433 37788899999 8888887642 235777787763 2222
Q ss_pred eecCcccccccCCCCCceEeccCCCEEEEee
Q 005240 341 LFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 341 l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 371 (706)
........ ...+.|+|+|++|+...
T Consensus 223 ~~~~~~~~------v~~~~~~~~~~~l~~~~ 247 (814)
T 3mkq_A 223 TLEGHMSN------VSFAVFHPTLPIIISGS 247 (814)
T ss_dssp EEECCSSC------EEEEEECSSSSEEEEEE
T ss_pred EEcCCCCC------EEEEEEcCCCCEEEEEe
Confidence 22221111 22377899999877654
|
| >3pe6_A Monoglyceride lipase; alpha-beta hydrolase fold, 2-arachidonyl-glycerol, M associated, hydrolase, hydrolase-hydrolase inhibitor comple; HET: ZYH; 1.35A {Homo sapiens} PDB: 3jw8_A 3jwe_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=7.5e-13 Score=134.06 Aligned_cols=127 Identities=17% Similarity=0.171 Sum_probs=97.2
Q ss_pred EEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCC
Q 005240 486 KYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIP 565 (706)
Q Consensus 486 ~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~ 565 (706)
.+...||..|.++++.|.+ .+.|+||++||.+.. ... ...++..|+++||.|+..+.+
T Consensus 21 ~~~~~~g~~l~~~~~~~~~------~~~~~vv~~hG~~~~-----------~~~----~~~~~~~l~~~g~~v~~~d~~- 78 (303)
T 3pe6_A 21 HLVNADGQYLFCRYWAPTG------TPKALIFVSHGAGEH-----------SGR----YEELARMLMGLDLLVFAHDHV- 78 (303)
T ss_dssp EEECTTSCEEEEEEECCSS------CCSEEEEEECCTTCC-----------GGG----GHHHHHHHHHTTEEEEEECCT-
T ss_pred eEecCCCeEEEEEEeccCC------CCCeEEEEECCCCch-----------hhH----HHHHHHHHHhCCCcEEEeCCC-
Confidence 6777899999999998864 135899999996421 011 124567788899999996665
Q ss_pred cCCCCCCCCc---hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCC
Q 005240 566 IIGEGDKLPN---DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYN 638 (706)
Q Consensus 566 ~~g~g~~~~~---~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d 638 (706)
|+|.+... .......++|+.++++++..+ .+..++.++|||+||++++.++.++|++++++++.+|...
T Consensus 79 --G~G~s~~~~~~~~~~~~~~~d~~~~l~~l~~~--~~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~ 150 (303)
T 3pe6_A 79 --GHGQSEGERMVVSDFHVFVRDVLQHVDSMQKD--YPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLVL 150 (303)
T ss_dssp --TSTTSCSSTTCCSSTHHHHHHHHHHHHHHHHH--STTCCEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCSSS
T ss_pred --CCCCCCCCCCCCCCHHHHHHHHHHHHHHHhhc--cCCceEEEEEeCHHHHHHHHHHHhCcccccEEEEECcccc
Confidence 44544322 123456788999999999876 3457999999999999999999999999999999998754
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.4e-11 Score=128.20 Aligned_cols=297 Identities=11% Similarity=0.038 Sum_probs=167.8
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~ 111 (706)
.+..+.|||||++|+..+. ...|.++|+.+++.......... .+..++|+|||++|+..+.+
T Consensus 68 ~V~~~~~sp~~~~l~s~s~----------D~~v~iWd~~~~~~~~~~~~h~~----~v~~~~~s~~g~~las~~~d---- 129 (380)
T 3iz6_a 68 KVYSLDWTPEKNWIVSASQ----------DGRLIVWNALTSQKTHAIKLHCP----WVMECAFAPNGQSVACGGLD---- 129 (380)
T ss_dssp CEEEEEECTTSSCEEEEET----------TSEEEEEETTTTEEEEEEECCCT----TCCCCEECTTSSEEEECCSS----
T ss_pred EEEEEEEcCCCCEEEEEeC----------CCeEEEEECCCCccceEEecCCC----CEEEEEECCCCCEEEEeeCC----
Confidence 5889999999999987643 25777889888765443322221 26788999999998865321
Q ss_pred CCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccC------C--Cc-eecCCC-ceEeeee
Q 005240 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD------G--TA-KDFGTP-AVYTAVE 181 (706)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~------g--~~-~~lt~~-~~~~~~~ 181 (706)
..+.++++. + .. +.+... ..+..+.
T Consensus 130 ---------------------------------------------~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~ 164 (380)
T 3iz6_a 130 ---------------------------------------------SACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQ 164 (380)
T ss_dssp ---------------------------------------------SCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCB
T ss_pred ---------------------------------------------CcEEEEECCCCccccCCccceeeccCCCcceEEEE
Confidence 233333441 1 11 122333 5677889
Q ss_pred eCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeec-CCCceEEEE
Q 005240 182 PSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRA-DKPSTLYWV 260 (706)
Q Consensus 182 ~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~sp-dg~~~l~~~ 260 (706)
|+|++...+++.... ..|.+||+.+++.............. ..+..+.|++ ++.. |+ .
T Consensus 165 ~~~~~~~~l~s~s~D------------~~i~~wd~~~~~~~~~~~~~~~~~h~-------~~v~~~~~~~~~~~~-l~-s 223 (380)
T 3iz6_a 165 YVPDQETRLITGSGD------------QTCVLWDVTTGQRISIFGSEFPSGHT-------ADVLSLSINSLNANM-FI-S 223 (380)
T ss_dssp CCSSSSSCEEEECTT------------SCEEEECTTTCCEEEEECCCSSSSCC-------SCEEEEEECSSSCCE-EE-E
T ss_pred EecCCCCEEEEECCC------------CcEEEEEcCCCcEEEEeecccCCCCc-------cCeEEEEeecCCCCE-EE-E
Confidence 999866544444332 47999999866544332211110000 1233667766 5553 33 2
Q ss_pred EeccCCCCccccCccceeeeecCCCCCCC-CceEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCce
Q 005240 261 EAQDRGDANVEVSPRDIIYTQPAEPAEGE-KPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPR 339 (706)
Q Consensus 261 ~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~ 339 (706)
...+ ..|.+||+. .++ ..+.+..+...+..+.|+|||+.|+..+.+ + .|.++|+.++ +..
T Consensus 224 gs~D-----------~~v~~wd~~--~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D--~--~i~lwd~~~~--~~~ 284 (380)
T 3iz6_a 224 GSCD-----------TTVRLWDLR--ITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDD--G--TCRLFDMRTG--HQL 284 (380)
T ss_dssp EETT-----------SCEEEEETT--TTCCCCEEECCCSSCCCEEEECTTSSEEEEECSS--S--CEEEEETTTT--EEE
T ss_pred EECC-----------CeEEEEECC--CCCcceEEECCcCCCeEEEEEecCCCeEEEEcCC--C--eEEEEECCCC--cEE
Confidence 2111 247788872 132 344555677889999999999988876532 2 3666677663 233
Q ss_pred eeecCcccc-cccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeeecccchhh
Q 005240 340 VLFDRVFEN-VYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKY 418 (706)
Q Consensus 340 ~l~~~~~~~-~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~ 418 (706)
..+...... ....+....+.|+|+|++|+..... ..++.+|..+++.......-
T Consensus 285 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d---------------------g~i~vwd~~~~~~~~~~~~~---- 339 (380)
T 3iz6_a 285 QVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSN---------------------GDCYVWDTLLAEMVLNLGTL---- 339 (380)
T ss_dssp EEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTT---------------------SCEEEEETTTCCEEEEECCS----
T ss_pred EEecccccccccccCceEEEEECCCCCEEEEEECC---------------------CCEEEEECCCCceEEEEecc----
Confidence 332221110 0011123457899999988776421 13556676666542221100
Q ss_pred hhhhhhhccCCCceecccCCCEEEEEEecCCCCcEEEEEECCCCc
Q 005240 419 FETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKK 463 (706)
Q Consensus 419 ~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~p~~v~~~~~~~~~ 463 (706)
...+........|||||+.|+....+. .|.+|++.+++
T Consensus 340 ---~~~h~~~v~~l~~s~dg~~l~sgs~D~----~i~iW~~~~~~ 377 (380)
T 3iz6_a 340 ---QNSHEGRISCLGLSSDGSALCTGSWDK----NLKIWAFSGHR 377 (380)
T ss_dssp ---CSSCCCCCCEEEECSSSSEEEEECTTS----CEEEEECCSSS
T ss_pred ---cCCCCCceEEEEECCCCCEEEEeeCCC----CEEEEecCCCc
Confidence 001112234578999998776544333 48899887653
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.49 E-value=1.7e-11 Score=130.87 Aligned_cols=226 Identities=9% Similarity=0.015 Sum_probs=139.9
Q ss_pred ceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeeccc-CCCcc
Q 005240 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFE-SPDIC 84 (706)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~-~~~~~ 84 (706)
.|+++++.. ++..+. +..........|+|||++||.... ...|.++++++++..++.. +..
T Consensus 79 ~v~i~d~~~----~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~h~~-- 140 (420)
T 3vl1_A 79 HDFLFNTII----RDGSKM--LKRADYTAVDTAKLQMRRFILGTT----------EGDIKVLDSNFNLQREIDQAHVS-- 140 (420)
T ss_dssp EEEEEECCS----EETTTT--SCSCCEEEEEEECSSSCEEEEEET----------TSCEEEECTTSCEEEEETTSSSS--
T ss_pred cEEEEEecc----cceeeE--EecCCceEEEEEecCCCEEEEEEC----------CCCEEEEeCCCcceeeecccccC--
Confidence 567777755 332222 222233445579999999988643 2567778888887766532 222
Q ss_pred ccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc
Q 005240 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (706)
Q Consensus 85 ~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l 164 (706)
.+..+.|+|||++|+..+. .+.|.++++
T Consensus 141 ---~v~~~~~~~~~~~l~s~s~-------------------------------------------------d~~i~iwd~ 168 (420)
T 3vl1_A 141 ---EITKLKFFPSGEALISSSQ-------------------------------------------------DMQLKIWSV 168 (420)
T ss_dssp ---CEEEEEECTTSSEEEEEET-------------------------------------------------TSEEEEEET
T ss_pred ---ccEEEEECCCCCEEEEEeC-------------------------------------------------CCeEEEEeC
Confidence 3788999999998887642 157888898
Q ss_pred -CC-CceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCc----cc
Q 005240 165 -DG-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPV----CY 237 (706)
Q Consensus 165 -~g-~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~----~~ 237 (706)
++ ....+... ..+..++|+|||+.|+..+.. ..|.+||+.+++.............+. +.
T Consensus 169 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d-------------~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 235 (420)
T 3vl1_A 169 KDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLD-------------GTIRLWECGTGTTIHTFNRKENPHDGVNSIALF 235 (420)
T ss_dssp TTCCCCEEEECCSSCEEEEEEETTTTEEEEEETT-------------SCEEEEETTTTEEEEEECBTTBTTCCEEEEEEE
T ss_pred CCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCC-------------CcEEEeECCCCceeEEeecCCCCCCCccEEEEe
Confidence 55 45555544 678999999999999865543 379999998665443322211100000 00
Q ss_pred --------CccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCc-eEEee-cccccccceec
Q 005240 238 --------NSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP-EILHK-LDLRFRSVSWC 307 (706)
Q Consensus 238 --------~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~-~~l~~-~~~~~~~~~ws 307 (706)
.........+.|+|||+. |+... . .+.|.+||+ .+++. ..+.. ....+..+.|+
T Consensus 236 ~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~-~-----------dg~i~i~d~---~~~~~~~~~~~~~~~~v~~~~~~ 299 (420)
T 3vl1_A 236 VGTDRQLHEISTSKKNNLEFGTYGKY-VIAGH-V-----------SGVITVHNV---FSKEQTIQLPSKFTCSCNSLTVD 299 (420)
T ss_dssp ECCCSSCGGGCCCCCCTTCSSCTTEE-EEEEE-T-----------TSCEEEEET---TTCCEEEEECCTTSSCEEEEEEC
T ss_pred cCCcceeeecccCcccceEEcCCCCE-EEEEc-C-----------CCeEEEEEC---CCCceeEEcccccCCCceeEEEe
Confidence 000122446789999986 54321 1 124788888 44443 33332 35678899999
Q ss_pred CCCc-eEEEEeeccccceEEEEEcCCCC
Q 005240 308 DDSL-ALVNETWYKTSQTRTWLVCPGSK 334 (706)
Q Consensus 308 pDg~-~l~~~~~~~~~~~~l~~~d~~~~ 334 (706)
|++. .|+..+ . ...|.++|+.++
T Consensus 300 ~~~~~~l~~g~-~---dg~i~vwd~~~~ 323 (420)
T 3vl1_A 300 GNNANYIYAGY-E---NGMLAQWDLRSP 323 (420)
T ss_dssp SSCTTEEEEEE-T---TSEEEEEETTCT
T ss_pred CCCCCEEEEEe-C---CCeEEEEEcCCC
Confidence 9998 666544 2 235777888775
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.49 E-value=5.6e-11 Score=121.40 Aligned_cols=278 Identities=11% Similarity=0.109 Sum_probs=165.4
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~ 111 (706)
.+..++|||||++||.... + ..|.++++.+++..+...... ..+..+.|+|||++|+..+.+
T Consensus 25 ~v~~~~~s~~~~~l~s~~~--------d--g~i~iw~~~~~~~~~~~~~h~----~~v~~~~~~~~~~~l~s~~~d---- 86 (312)
T 4ery_A 25 AVSSVKFSPNGEWLASSSA--------D--KLIKIWGAYDGKFEKTISGHK----LGISDVAWSSDSNLLVSASDD---- 86 (312)
T ss_dssp CEEEEEECTTSSEEEEEET--------T--SCEEEEETTTCCEEEEECCCS----SCEEEEEECTTSSEEEEEETT----
T ss_pred cEEEEEECCCCCEEEEeeC--------C--CeEEEEeCCCcccchhhccCC----CceEEEEEcCCCCEEEEECCC----
Confidence 5889999999999988653 3 456777887776655433222 137789999999998876421
Q ss_pred CCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCC-ceecCCC-ceEeeeeeCCCCcE
Q 005240 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGTP-AVYTAVEPSPDQKY 188 (706)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~-~~~lt~~-~~~~~~~~SpDG~~ 188 (706)
+.|.++++ +++ ...+... ..+..+.|+|+++.
T Consensus 87 ---------------------------------------------~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 121 (312)
T 4ery_A 87 ---------------------------------------------KTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL 121 (312)
T ss_dssp ---------------------------------------------SEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSE
T ss_pred ---------------------------------------------CEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCE
Confidence 56778888 454 3344434 67889999999999
Q ss_pred EEEEeeccCcccccccccccceEEEEecCCCe-eEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCC
Q 005240 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKL-VRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGD 267 (706)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~ 267 (706)
|+..+.. ..|.+||+.+++ .+.+.... ..+..+.|+|+++. |+... .+
T Consensus 122 l~s~~~d-------------~~i~iwd~~~~~~~~~~~~~~-------------~~v~~~~~~~~~~~-l~~~~-~d--- 170 (312)
T 4ery_A 122 IVSGSFD-------------ESVRIWDVKTGKCLKTLPAHS-------------DPVSAVHFNRDGSL-IVSSS-YD--- 170 (312)
T ss_dssp EEEEETT-------------SCEEEEETTTCCEEEEECCCS-------------SCEEEEEECTTSSE-EEEEE-TT---
T ss_pred EEEEeCC-------------CcEEEEECCCCEEEEEecCCC-------------CcEEEEEEcCCCCE-EEEEe-CC---
Confidence 8765543 379999998554 33433221 11447899999985 44331 11
Q ss_pred CccccCccceeeeecCCCCCCCCc-eEEe-ecccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCc
Q 005240 268 ANVEVSPRDIIYTQPAEPAEGEKP-EILH-KLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRV 345 (706)
Q Consensus 268 ~~~~~~~~~~l~~~d~~~~~~~~~-~~l~-~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~ 345 (706)
+.|.++|+ ..++. ..+. .....+..+.|+|+++.|+..+. ...|.++|+.++ +....+...
T Consensus 171 --------~~i~~wd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~--~~~~~~~~~ 233 (312)
T 4ery_A 171 --------GLCRIWDT---ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL----DNTLKLWDYSKG--KCLKTYTGH 233 (312)
T ss_dssp --------SCEEEEET---TTCCEEEEECCSSCCCEEEEEECTTSSEEEEEET----TTEEEEEETTTT--EEEEEECSS
T ss_pred --------CcEEEEEC---CCCceeeEEeccCCCceEEEEECCCCCEEEEEcC----CCeEEEEECCCC--cEEEEEEec
Confidence 24778888 44443 2332 23445677899999999887652 235777787763 222222211
Q ss_pred ccccccCCCCCceEec-cCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeeecccchhhhhhhhh
Q 005240 346 FENVYSDPGSPMMTRT-STGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVA 424 (706)
Q Consensus 346 ~~~~~~~~~~~~~~~s-~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~ 424 (706)
.... ......++ +++++|+.... ...+..+|+.+++..+......
T Consensus 234 ~~~~----~~~~~~~~~~~~~~l~sg~~---------------------dg~i~vwd~~~~~~~~~~~~h~--------- 279 (312)
T 4ery_A 234 KNEK----YCIFANFSVTGGKWIVSGSE---------------------DNLVYIWNLQTKEIVQKLQGHT--------- 279 (312)
T ss_dssp CCSS----SCCCEEEECSSSCEEEECCT---------------------TSCEEEEETTTCCEEEEECCCS---------
T ss_pred CCce----EEEEEEEEeCCCcEEEEECC---------------------CCEEEEEECCCchhhhhhhccC---------
Confidence 1100 01112233 55665544321 1136667877776544433321
Q ss_pred hccCCCceecccCCCEEEEEEecCCCCcEEEEEE
Q 005240 425 LVFGQGEEDINLNQLKILTSKESKTEITQYHILS 458 (706)
Q Consensus 425 ~~~~~~~~~~s~Dg~~l~~~~~~~~~p~~v~~~~ 458 (706)
.......|+|+++.++....+.. ..|.+|+
T Consensus 280 --~~v~~~~~~p~~~~l~s~~~~~d--~~i~~W~ 309 (312)
T 4ery_A 280 --DVVISTACHPTENIIASAALEND--KTIKLWK 309 (312)
T ss_dssp --SCEEEEEECSSSSEEEEEECTTT--CCEEEEE
T ss_pred --CcEEEEeecCcCCceEEEEccCC--ccEEEec
Confidence 11234689999987765432222 2355554
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.7e-11 Score=126.36 Aligned_cols=268 Identities=10% Similarity=0.082 Sum_probs=157.9
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~ 111 (706)
.+..+.|||||++||..+. + ..|.++|..+++.......... .+..+.|+|||+.|+....+
T Consensus 66 ~V~~~~~s~d~~~l~s~s~--------D--g~v~vWd~~~~~~~~~~~~~~~----~v~~~~~sp~g~~lasg~~d---- 127 (354)
T 2pbi_B 66 KVLCMDWCKDKRRIVSSSQ--------D--GKVIVWDSFTTNKEHAVTMPCT----WVMACAYAPSGCAIACGGLD---- 127 (354)
T ss_dssp CEEEEEECTTSSEEEEEET--------T--SEEEEEETTTCCEEEEEECSSS----CCCEEEECTTSSEEEEESTT----
T ss_pred eEEEEEECCCCCEEEEEeC--------C--CeEEEEECCCCCcceEEecCCC----CEEEEEECCCCCEEEEeeCC----
Confidence 4889999999999987643 3 4677778877665443322221 26788999999998876421
Q ss_pred CCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccC--C------CceecCCC-ceEeeeee
Q 005240 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD--G------TAKDFGTP-AVYTAVEP 182 (706)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~--g------~~~~lt~~-~~~~~~~~ 182 (706)
+.+.++++. . ....+... ..+..+.|
T Consensus 128 ---------------------------------------------~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 162 (354)
T 2pbi_B 128 ---------------------------------------------NKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSF 162 (354)
T ss_dssp ---------------------------------------------SEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEE
T ss_pred ---------------------------------------------CCEEEEEEeccccccccccceeeeccCCcEEEEEE
Confidence 233334431 1 11122222 56789999
Q ss_pred CCCCcEEEEEeeccCcccccccccccceEEEEecCCCee-EEcccCCCCCCCCcccCccCCCCcceeeecC--CCceEEE
Q 005240 183 SPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIPVCYNSVREGMRSISWRAD--KPSTLYW 259 (706)
Q Consensus 183 SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~l~~~~~~~~~p~~~~~~~~g~~~~~~spd--g~~~l~~ 259 (706)
+|+++.|+..+.+ ..|.+||+.+++. +.+..+. ..+..+.|+|+ |+. |+
T Consensus 163 ~~~~~~l~t~s~D-------------~~v~lwd~~~~~~~~~~~~h~-------------~~v~~~~~~~~~~g~~-l~- 214 (354)
T 2pbi_B 163 TNSDMQILTASGD-------------GTCALWDVESGQLLQSFHGHG-------------ADVLCLDLAPSETGNT-FV- 214 (354)
T ss_dssp CSSSSEEEEEETT-------------SEEEEEETTTCCEEEEEECCS-------------SCEEEEEECCCSSCCE-EE-
T ss_pred eCCCCEEEEEeCC-------------CcEEEEeCCCCeEEEEEcCCC-------------CCeEEEEEEeCCCCCE-EE-
Confidence 9999998865543 3799999986654 3333221 11335567664 443 43
Q ss_pred EEeccCCCCccccCccceeeeecCCCCCCCCce-EEeecccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCc
Q 005240 260 VEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPE-ILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAP 338 (706)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~-~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~ 338 (706)
....+ ..|.+||+ .+++.. .+..+...+..+.|+|++..|+..+.+ +. |.++|+.+. ..
T Consensus 215 sgs~D-----------g~v~~wd~---~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D--~~--v~lwd~~~~--~~ 274 (354)
T 2pbi_B 215 SGGCD-----------KKAMVWDM---RSGQCVQAFETHESDVNSVRYYPSGDAFASGSDD--AT--CRLYDLRAD--RE 274 (354)
T ss_dssp EEETT-----------SCEEEEET---TTCCEEEEECCCSSCEEEEEECTTSSEEEEEETT--SC--EEEEETTTT--EE
T ss_pred EEeCC-----------CeEEEEEC---CCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCC--Ce--EEEEECCCC--cE
Confidence 32211 24788888 455543 344567788899999999988876532 33 555566653 22
Q ss_pred eeeecCcccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeeecccchhh
Q 005240 339 RVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKY 418 (706)
Q Consensus 339 ~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~ 418 (706)
..++..... ..+...+.|+|+|++|+..... ..+..+|+.+++.........
T Consensus 275 ~~~~~~~~~----~~~~~~~~~s~~g~~l~~g~~d---------------------~~i~vwd~~~~~~~~~l~~h~--- 326 (354)
T 2pbi_B 275 VAIYSKESI----IFGASSVDFSLSGRLLFAGYND---------------------YTINVWDVLKGSRVSILFGHE--- 326 (354)
T ss_dssp EEEECCTTC----CSCEEEEEECTTSSEEEEEETT---------------------SCEEEEETTTCSEEEEECCCS---
T ss_pred EEEEcCCCc----ccceeEEEEeCCCCEEEEEECC---------------------CcEEEEECCCCceEEEEECCC---
Confidence 222221100 0012246789999988776421 135567776665433322211
Q ss_pred hhhhhhhccCCCceecccCCCEEEEEEe
Q 005240 419 FETAVALVFGQGEEDINLNQLKILTSKE 446 (706)
Q Consensus 419 ~~~~~~~~~~~~~~~~s~Dg~~l~~~~~ 446 (706)
.......|||||+.|+....
T Consensus 327 --------~~v~~l~~spdg~~l~sgs~ 346 (354)
T 2pbi_B 327 --------NRVSTLRVSPDGTAFCSGSW 346 (354)
T ss_dssp --------SCEEEEEECTTSSCEEEEET
T ss_pred --------CcEEEEEECCCCCEEEEEcC
Confidence 12235789999987775443
|
| >3g8y_A SUSD/RAGB-associated esterase-like protein; structural genom joint center for structural genomics, JCSG; HET: MSE; 1.90A {Bacteroides vulgatus atcc 8482} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.4e-13 Score=143.75 Aligned_cols=152 Identities=11% Similarity=0.044 Sum_probs=106.3
Q ss_pred CCCceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCC-------CcCCCCchHHHH
Q 005240 478 ASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPN-------EFSGMTPTSSLI 550 (706)
Q Consensus 478 ~~~~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~ 550 (706)
..+..+.+++.+.+|..++++++.|++. .+|+|+||++||.+... ......+. .+......+++.
T Consensus 83 ~g~~~e~v~~~~~~g~~l~~~l~~P~~~----~~~~P~Vl~~HG~g~~~----~~~~~~~~~~~~~~~~y~~~~~~~a~~ 154 (391)
T 3g8y_A 83 EGYILEKWEFYPFPKSVSTFLVLKPEHL----KGAVPGVLCIPGSGRTK----EGLVGEPGICDKLTEDYNNPKVSMALN 154 (391)
T ss_dssp TTEEEEEEEECCSTTCCEEEEEEEETTC----CSCEEEEEEECCTTCCH----HHHTTCCCSSGGGCCCTTSTTTCHHHH
T ss_pred CCEEEEEEEEEcCCCCEEEEEEEeCCCC----CCCCCEEEEeCCCCCCc----hhhccccccccccchhhcchHHHHHHH
Confidence 4467788999999999999999999863 23689999999964211 00000000 000001146788
Q ss_pred HHHCCeEEEEcCCCCcCCCCCCC-------Cch------------hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEech
Q 005240 551 FLARRFAVLAGPSIPIIGEGDKL-------PND------------RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSY 611 (706)
Q Consensus 551 l~~~G~~v~~~~~~~~~g~g~~~-------~~~------------~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~ 611 (706)
|+++||+|+.++.+|....+... ... .+....+.|+.++++||.+++.+|++||+|+|+||
T Consensus 155 la~~G~~Vl~~D~rg~G~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~a~d~l~~~~~vd~~rI~v~G~S~ 234 (391)
T 3g8y_A 155 MVKEGYVAVAVDNAAAGEASDLECYDKGWNYDYDVVSRFLLELGWSWLGYTSYLDMQVLNWMKAQSYIRKDRIVISGFSL 234 (391)
T ss_dssp HHTTTCEEEECCCTTSGGGCSSGGGTTTTSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCTTEEEEEEEEEEEGG
T ss_pred HHHCCCEEEEecCCCccccCCcccccccccchHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccCCCCCeEEEEEECh
Confidence 99999999998876543222110 000 11223358999999999999889999999999999
Q ss_pred HHHHHHHHHHhCCCceeEEEeccCCCC
Q 005240 612 GAFMTAHLLAHAPHLFCCGIARSGSYN 638 (706)
Q Consensus 612 GG~~a~~~~~~~p~~~~a~v~~~~~~d 638 (706)
||++|++++.+. ++++|+|+.+++..
T Consensus 235 GG~~al~~a~~~-~~i~a~v~~~~~~~ 260 (391)
T 3g8y_A 235 GTEPMMVLGVLD-KDIYAFVYNDFLCQ 260 (391)
T ss_dssp GHHHHHHHHHHC-TTCCEEEEESCBCC
T ss_pred hHHHHHHHHHcC-CceeEEEEccCCCC
Confidence 999999999887 68899887765543
|
| >2h1i_A Carboxylesterase; structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics, MCSG, H; HET: MSE; 2.80A {Bacillus cereus} SCOP: c.69.1.14 | Back alignment and structure |
|---|
Probab=99.48 E-value=1.3e-12 Score=126.90 Aligned_cols=161 Identities=15% Similarity=0.072 Sum_probs=113.7
Q ss_pred CceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCCCC---------chhhHHHH
Q 005240 512 PLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLP---------NDRFVEQL 582 (706)
Q Consensus 512 ~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~---------~~~~~~~~ 582 (706)
+.|+||++||.+.. .. .....+..|++ ||.|+.++. ...|+|.+.. ........
T Consensus 37 ~~~~vv~~HG~~~~-----------~~----~~~~~~~~l~~-g~~v~~~~~-d~~g~g~s~~~~~~~~~~~~~~~~~~~ 99 (226)
T 2h1i_A 37 SKPVLLLLHGTGGN-----------EL----DLLPLAEIVDS-EASVLSVRG-NVLENGMPRFFRRLAEGIFDEEDLIFR 99 (226)
T ss_dssp TSCEEEEECCTTCC-----------TT----TTHHHHHHHHT-TSCEEEECC-SEEETTEEESSCEEETTEECHHHHHHH
T ss_pred CCcEEEEEecCCCC-----------hh----HHHHHHHHhcc-CceEEEecC-cccCCcchhhccccCccCcChhhHHHH
Confidence 46899999997421 01 11234556666 999988632 2223332210 11223344
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCCCCC--------CCcc---------
Q 005240 583 VSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTL--------TPFG--------- 645 (706)
Q Consensus 583 ~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d~~~--------~~~~--------- 645 (706)
+.++.+.++++.++..+|+.+|+++|+|+||++++.++.++|++++++++.+|...... .|..
T Consensus 100 ~~~~~~~l~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~p~l~~~G~~D~~ 179 (226)
T 2h1i_A 100 TKELNEFLDEAAKEYKFDRNNIVAIGYSNGANIAASLLFHYENALKGAVLHHPMVPRRGMQLANLAGKSVFIAAGTNDPI 179 (226)
T ss_dssp HHHHHHHHHHHHHHTTCCTTCEEEEEETHHHHHHHHHHHHCTTSCSEEEEESCCCSCSSCCCCCCTTCEEEEEEESSCSS
T ss_pred HHHHHHHHHHHHhhcCCCcccEEEEEEChHHHHHHHHHHhChhhhCEEEEeCCCCCcCccccccccCCcEEEEeCCCCCc
Confidence 66677777777777668899999999999999999999999999999999999865331 1110
Q ss_pred c---hHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHh
Q 005240 646 F---QAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYC 695 (706)
Q Consensus 646 ~---~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~~~~l 695 (706)
. ..+++++.|...+.++++ ++|+++|.+. .+..+.+.+||+++|
T Consensus 180 ~~~~~~~~~~~~l~~~~~~~~~-~~~~~gH~~~-----~~~~~~~~~~l~~~l 226 (226)
T 2h1i_A 180 CSSAESEELKVLLENANANVTM-HWENRGHQLT-----MGEVEKAKEWYDKAF 226 (226)
T ss_dssp SCHHHHHHHHHHHHTTTCEEEE-EEESSTTSCC-----HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHhcCCeEEE-EeCCCCCCCC-----HHHHHHHHHHHHHhC
Confidence 1 234888999988889999 9999999884 356788999998865
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=1.8e-11 Score=130.50 Aligned_cols=275 Identities=11% Similarity=0.099 Sum_probs=165.3
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~ 111 (706)
.+..+.||||++.|+..+. + ..|.++|+++++..+....... .+..+.|+|||++|+..+.+
T Consensus 110 ~V~~~~~~p~~~~l~s~s~--------D--g~i~vwd~~~~~~~~~l~~h~~----~V~~v~~~~~~~~l~sgs~D---- 171 (410)
T 1vyh_C 110 PVTRVIFHPVFSVMVSASE--------D--ATIKVWDYETGDFERTLKGHTD----SVQDISFDHSGKLLASCSAD---- 171 (410)
T ss_dssp CEEEEEECSSSSEEEEEES--------S--SCEEEEETTTCCCCEEECCCSS----CEEEEEECTTSSEEEEEETT----
T ss_pred cEEEEEEcCCCCEEEEEeC--------C--CeEEEEECCCCcEEEEEeccCC----cEEEEEEcCCCCEEEEEeCC----
Confidence 4778899999999887643 2 4677788888775544322221 27789999999988876431
Q ss_pred CCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCC-Cc-eecCCC-ceEeeeeeCCCCcE
Q 005240 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TA-KDFGTP-AVYTAVEPSPDQKY 188 (706)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g-~~-~~lt~~-~~~~~~~~SpDG~~ 188 (706)
+.|.++|+.+ +. +.+... ..+..++|+|||++
T Consensus 172 ---------------------------------------------~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~ 206 (410)
T 1vyh_C 172 ---------------------------------------------MTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDH 206 (410)
T ss_dssp ---------------------------------------------SCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSE
T ss_pred ---------------------------------------------CeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCE
Confidence 3455567743 43 333333 67889999999999
Q ss_pred EEEEeeccCcccccccccccceEEEEecCCCe-eEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCC
Q 005240 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKL-VRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGD 267 (706)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~ 267 (706)
|+..+.+ ..|.+||+.++. .+.+.... ..+..+.|+|||+. |+-. ..+
T Consensus 207 l~s~s~D-------------~~i~~wd~~~~~~~~~~~~h~-------------~~v~~~~~~~~g~~-l~s~-s~D--- 255 (410)
T 1vyh_C 207 IVSASRD-------------KTIKMWEVQTGYCVKTFTGHR-------------EWVRMVRPNQDGTL-IASC-SND--- 255 (410)
T ss_dssp EEEEETT-------------SEEEEEETTTCCEEEEEECCS-------------SCEEEEEECTTSSE-EEEE-ETT---
T ss_pred EEEEeCC-------------CeEEEEECCCCcEEEEEeCCC-------------ccEEEEEECCCCCE-EEEE-cCC---
Confidence 8765543 379999998554 34443221 12446789999985 4422 111
Q ss_pred CccccCccceeeeecCCCCCCCCce-EEeecccccccceecCC--------------------CceEEEEeeccccceEE
Q 005240 268 ANVEVSPRDIIYTQPAEPAEGEKPE-ILHKLDLRFRSVSWCDD--------------------SLALVNETWYKTSQTRT 326 (706)
Q Consensus 268 ~~~~~~~~~~l~~~d~~~~~~~~~~-~l~~~~~~~~~~~wspD--------------------g~~l~~~~~~~~~~~~l 326 (706)
..|.+||+ .+++.. .+..+...+..+.|+|+ |..|+..+. ...|
T Consensus 256 --------~~v~vwd~---~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~----D~~i 320 (410)
T 1vyh_C 256 --------QTVRVWVV---ATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR----DKTI 320 (410)
T ss_dssp --------SCEEEEET---TTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEET----TSEE
T ss_pred --------CeEEEEEC---CCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeC----CCeE
Confidence 24778887 444433 34456677888899997 445555442 2347
Q ss_pred EEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCc
Q 005240 327 WLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGS 406 (706)
Q Consensus 327 ~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~ 406 (706)
.++|+.++ .....+...-.. ...+.|+|+|++|+....+ + .|..+|+.+++
T Consensus 321 ~iwd~~~~--~~~~~~~~h~~~------v~~v~~~~~g~~l~s~s~D----~-----------------~i~vwd~~~~~ 371 (410)
T 1vyh_C 321 KMWDVSTG--MCLMTLVGHDNW------VRGVLFHSGGKFILSCADD----K-----------------TLRVWDYKNKR 371 (410)
T ss_dssp EEEETTTT--EEEEEEECCSSC------EEEEEECSSSSCEEEEETT----T-----------------EEEEECCTTSC
T ss_pred EEEECCCC--ceEEEEECCCCc------EEEEEEcCCCCEEEEEeCC----C-----------------eEEEEECCCCc
Confidence 77787764 222222211111 1236789999988765421 1 35556666665
Q ss_pred eeeeecccchhhhhhhhhhccCCCceecccCCCEEEEEEecCCCCcEEEEEEC
Q 005240 407 KERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSW 459 (706)
Q Consensus 407 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~p~~v~~~~~ 459 (706)
......... .......|+|++..|+....+. .|.+|++
T Consensus 372 ~~~~~~~h~-----------~~v~~l~~~~~~~~l~sgs~D~----~i~vW~~ 409 (410)
T 1vyh_C 372 CMKTLNAHE-----------HFVTSLDFHKTAPYVVTGSVDQ----TVKVWEC 409 (410)
T ss_dssp CCEEEECCS-----------SCEEEEEECSSSSCEEEEETTS----EEEEEC-
T ss_pred eEEEEcCCC-----------CcEEEEEEcCCCCEEEEEeCCC----cEEEEeC
Confidence 433322211 1123568999998776543332 4666653
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.47 E-value=5.2e-12 Score=134.93 Aligned_cols=221 Identities=8% Similarity=-0.004 Sum_probs=137.9
Q ss_pred ccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCC
Q 005240 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDP 112 (706)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~ 112 (706)
...++|||||++|+.... + ..++++++.+++..+...... ......|+|||++|+..+.+
T Consensus 59 ~~~~~~s~~g~~l~~~~~--------d--~~v~i~d~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~d----- 118 (420)
T 3vl1_A 59 GKGNTFEKVGSHLYKARL--------D--GHDFLFNTIIRDGSKMLKRAD-----YTAVDTAKLQMRRFILGTTE----- 118 (420)
T ss_dssp CTTCEEEEEETTEEEEEE--------T--TEEEEEECCSEETTTTSCSCC-----EEEEEEECSSSCEEEEEETT-----
T ss_pred ccceeeeecCCeEEEEEc--------C--CcEEEEEecccceeeEEecCC-----ceEEEEEecCCCEEEEEECC-----
Confidence 447899999999988753 2 578888888776554433222 13455789999998876421
Q ss_pred CCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCCceec-CCC-ceEeeeeeCCCCcEE
Q 005240 113 PKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDF-GTP-AVYTAVEPSPDQKYV 189 (706)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~~~l-t~~-~~~~~~~~SpDG~~i 189 (706)
+.|.++++ +++.... ... ..+..++|+|||+.|
T Consensus 119 --------------------------------------------g~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 154 (420)
T 3vl1_A 119 --------------------------------------------GDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEAL 154 (420)
T ss_dssp --------------------------------------------SCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEE
T ss_pred --------------------------------------------CCEEEEeCCCcceeeecccccCccEEEEECCCCCEE
Confidence 56777888 4444444 333 788999999999988
Q ss_pred EEEeeccCcccccccccccceEEEEecCCC-eeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCC
Q 005240 190 LITSMHRPYSYKVPCARFSQKVQVWTTDGK-LVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDA 268 (706)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~ 268 (706)
+..+.. ..|.+|++..+ ..+.+.... ..+..+.|+||++. |+... .+
T Consensus 155 ~s~s~d-------------~~i~iwd~~~~~~~~~~~~h~-------------~~v~~~~~~~~~~~-l~s~~-~d---- 202 (420)
T 3vl1_A 155 ISSSQD-------------MQLKIWSVKDGSNPRTLIGHR-------------ATVTDIAIIDRGRN-VLSAS-LD---- 202 (420)
T ss_dssp EEEETT-------------SEEEEEETTTCCCCEEEECCS-------------SCEEEEEEETTTTE-EEEEE-TT----
T ss_pred EEEeCC-------------CeEEEEeCCCCcCceEEcCCC-------------CcEEEEEEcCCCCE-EEEEc-CC----
Confidence 765543 37999999854 344443222 22457899999986 55332 11
Q ss_pred ccccCccceeeeecCCCCCCCCceEEee-------------------------cccccccceecCCCceEEEEeeccccc
Q 005240 269 NVEVSPRDIIYTQPAEPAEGEKPEILHK-------------------------LDLRFRSVSWCDDSLALVNETWYKTSQ 323 (706)
Q Consensus 269 ~~~~~~~~~l~~~d~~~~~~~~~~~l~~-------------------------~~~~~~~~~wspDg~~l~~~~~~~~~~ 323 (706)
..|.+||+ .+++...... ....+..+.|+|||+.|+.... .
T Consensus 203 -------~~v~iwd~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----d 268 (420)
T 3vl1_A 203 -------GTIRLWEC---GTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHV----S 268 (420)
T ss_dssp -------SCEEEEET---TTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEET----T
T ss_pred -------CcEEEeEC---CCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcC----C
Confidence 23667777 4333322221 1245667889999999887652 2
Q ss_pred eEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCC-EEEEe
Q 005240 324 TRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGT-NVIAK 370 (706)
Q Consensus 324 ~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~-~l~~~ 370 (706)
..|.++|+.+++ ....+...... ....+.|+|+|+ +|+..
T Consensus 269 g~i~i~d~~~~~-~~~~~~~~~~~------~v~~~~~~~~~~~~l~~g 309 (420)
T 3vl1_A 269 GVITVHNVFSKE-QTIQLPSKFTC------SCNSLTVDGNNANYIYAG 309 (420)
T ss_dssp SCEEEEETTTCC-EEEEECCTTSS------CEEEEEECSSCTTEEEEE
T ss_pred CeEEEEECCCCc-eeEEcccccCC------CceeEEEeCCCCCEEEEE
Confidence 236777777642 12222111111 122477899999 55544
|
| >3iii_A COCE/NOND family hydrolase; structural genomics, center for structural genomi infectious diseases, csgid; HET: MSE PLM; 1.95A {Staphylococcus aureus subsp} PDB: 3ib3_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=2.1e-13 Score=149.12 Aligned_cols=152 Identities=14% Similarity=0.137 Sum_probs=108.9
Q ss_pred CCceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCC--------CCcCCCCchHHHH
Q 005240 479 SLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSP--------NEFSGMTPTSSLI 550 (706)
Q Consensus 479 ~~~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~ 550 (706)
.+..+.+.++..||..|.+.+|+|++ .+|+|+||+.||-+...+.....+...| ..+..+....++.
T Consensus 38 ~~~~~~v~i~~~DG~~L~a~l~~P~~-----~~~~P~vl~~~pyg~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 112 (560)
T 3iii_A 38 MIMEKDGTVEMRDGEKLYINIFRPNK-----DGKFPVVMSADTYGKDNKPKITNMGALWPTLGTIPTSSFTPEESPDPGF 112 (560)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEECSS-----SSCEEEEEEEESSCTTCCCC--CHHHHSGGGCCCCCCTTCCTTSCCHHH
T ss_pred eEEEEEEEEECCCCcEEEEEEEecCC-----CCCCCEEEEecCCCCCcccccccccccccccccccccccccccCCCHHH
Confidence 45678899999999999999999985 2369999999864221100000000000 0000000013688
Q ss_pred HHHCCeEEEEcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEE
Q 005240 551 FLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCG 630 (706)
Q Consensus 551 l~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~ 630 (706)
|+++||+|+..+.||..+.+-.+ ..+.....+|+.++++||.+++++| .||+++|+||||++++.++++.|+.++|+
T Consensus 113 la~~Gy~vv~~D~RG~G~S~G~~--~~~~~~~~~D~~~~i~~l~~~~~~~-~~igl~G~S~GG~~al~~a~~~p~~l~ai 189 (560)
T 3iii_A 113 WVPNDYVVVKVALRGSDKSKGVL--SPWSKREAEDYYEVIEWAANQSWSN-GNIGTNGVSYLAVTQWWVASLNPPHLKAM 189 (560)
T ss_dssp HGGGTCEEEEEECTTSTTCCSCB--CTTSHHHHHHHHHHHHHHHTSTTEE-EEEEEEEETHHHHHHHHHHTTCCTTEEEE
T ss_pred HHhCCCEEEEEcCCCCCCCCCcc--ccCChhHHHHHHHHHHHHHhCCCCC-CcEEEEccCHHHHHHHHHHhcCCCceEEE
Confidence 99999999997777553332222 2344567899999999999988887 89999999999999999999999999999
Q ss_pred EeccCCCC
Q 005240 631 IARSGSYN 638 (706)
Q Consensus 631 v~~~~~~d 638 (706)
|+.+|+.|
T Consensus 190 v~~~~~~d 197 (560)
T 3iii_A 190 IPWEGLND 197 (560)
T ss_dssp EEESCCCB
T ss_pred EecCCccc
Confidence 99999876
|
| >3cn9_A Carboxylesterase; alpha/beta hydrolase fold super-family, hydrolase; HET: 2PE; 2.09A {Pseudomonas aeruginosa} PDB: 3cn7_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.9e-12 Score=125.75 Aligned_cols=162 Identities=15% Similarity=0.122 Sum_probs=117.7
Q ss_pred CceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHH--CCeEEEEcCCC----------------CcCCCCCCC
Q 005240 512 PLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA--RRFAVLAGPSI----------------PIIGEGDKL 573 (706)
Q Consensus 512 ~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~G~~v~~~~~~----------------~~~g~g~~~ 573 (706)
+.|+||++||.+.. ... ....+..|++ .||.|+.++.. ..+|+|...
T Consensus 23 ~~~~vv~lHG~~~~-----------~~~----~~~~~~~l~~~~~g~~v~~~d~p~~~~~~~~g~~~~~w~d~~g~g~~~ 87 (226)
T 3cn9_A 23 ADACIIWLHGLGAD-----------RTD----FKPVAEALQMVLPSTRFILPQAPSQAVTVNGGWVMPSWYDILAFSPAR 87 (226)
T ss_dssp CCEEEEEECCTTCC-----------GGG----GHHHHHHHHHHCTTEEEEECCCCEEECGGGTSCEEECSSCBCCSSSTT
T ss_pred CCCEEEEEecCCCC-----------hHH----HHHHHHHHhhcCCCcEEEeecCCCCccccCCCCccccccccccccccc
Confidence 57999999997421 011 1245567777 99999996654 223444332
Q ss_pred C-chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHH-hCCCceeEEEeccCCCCCCC----------
Q 005240 574 P-NDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLA-HAPHLFCCGIARSGSYNKTL---------- 641 (706)
Q Consensus 574 ~-~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~-~~p~~~~a~v~~~~~~d~~~---------- 641 (706)
. ........++|+..+++++.+ ..+|+++|+++|+|+||++++.++. ++|++++++++.+|..+...
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 166 (226)
T 3cn9_A 88 AIDEDQLNASADQVIALIDEQRA-KGIAAERIILAGFSQGGAVVLHTAFRRYAQPLGGVLALSTYAPTFDDLALDERHKR 166 (226)
T ss_dssp CBCHHHHHHHHHHHHHHHHHHHH-TTCCGGGEEEEEETHHHHHHHHHHHHTCSSCCSEEEEESCCCGGGGGCCCCTGGGG
T ss_pred cccchhHHHHHHHHHHHHHHHHH-cCCCcccEEEEEECHHHHHHHHHHHhcCccCcceEEEecCcCCCchhhhhcccccC
Confidence 2 223455667888888888776 3478889999999999999999999 99999999999998765311
Q ss_pred CCcc------------chHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHh
Q 005240 642 TPFG------------FQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYC 695 (706)
Q Consensus 642 ~~~~------------~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~~~~l 695 (706)
.|.. -..+++++.|...+.++++++++ ++|.+. .+..+.+.+||+++|
T Consensus 167 ~P~lii~G~~D~~~~~~~~~~~~~~l~~~g~~~~~~~~~-~gH~~~-----~~~~~~i~~~l~~~l 226 (226)
T 3cn9_A 167 IPVLHLHGSQDDVVDPALGRAAHDALQAQGVEVGWHDYP-MGHEVS-----LEEIHDIGAWLRKRL 226 (226)
T ss_dssp CCEEEEEETTCSSSCHHHHHHHHHHHHHTTCCEEEEEES-CCSSCC-----HHHHHHHHHHHHHHC
T ss_pred CCEEEEecCCCCccCHHHHHHHHHHHHHcCCceeEEEec-CCCCcc-----hhhHHHHHHHHHhhC
Confidence 1211 12348899999999899999999 999875 245678999999875
|
| >2gzs_A IROE protein; enterobactin, salmochelin, DFP, hydrolase, catalytic DYAD; HET: DFP; 1.40A {Escherichia coli} SCOP: c.69.1.38 PDB: 2gzr_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=7.1e-14 Score=140.33 Aligned_cols=193 Identities=12% Similarity=0.018 Sum_probs=119.6
Q ss_pred CCceEEEEEEccC-CeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHH-CCe
Q 005240 479 SLQKEMIKYQRKD-GVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA-RRF 556 (706)
Q Consensus 479 ~~~~~~~~~~~~d-g~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~G~ 556 (706)
....+.+++.+.. +.++..++|+|+++++.+ +||+|++.||+. ... . ......+.|++ .+.
T Consensus 10 ~~~~~~~~~~S~~~~~~~~~~vylP~~y~~~~--~yPvly~l~G~~---------~~~---~---~~~~~~~~l~~~~~~ 72 (278)
T 2gzs_A 10 FYHFSATSFDSVDGTRHYRVWTAVPNTTAPAS--GYPILYMLDGNA---------VMD---R---LDDELLKQLSEKTPP 72 (278)
T ss_dssp SEEEEEEEEECTTSSCEEEEEEEEESSCCCTT--CEEEEEESSHHH---------HHH---H---CCHHHHHHHTTSCCC
T ss_pred CCceEEEEEEcCCCCceEEEEEECCCCCCCCC--CCCEEEEeeChh---------HHH---H---HHHHHHHHhccCCCe
Confidence 3467888888875 689999999999987644 599876666642 100 0 01123345555 566
Q ss_pred EEEEcCCCCcC-----CCCCCCCc-----------------hhhHHHHHHHHH-HHHHHHHHcCCCCCCcEEEEEechHH
Q 005240 557 AVLAGPSIPII-----GEGDKLPN-----------------DRFVEQLVSSAE-AAVEEVVRRGVADPSRIAVGGHSYGA 613 (706)
Q Consensus 557 ~v~~~~~~~~~-----g~g~~~~~-----------------~~~~~~~~~D~~-~~~~~l~~~~~id~~~i~i~G~S~GG 613 (706)
+|+.+.+.+.. +++..+.. ........+-+. ..+.++.++..+|++|++|+|+||||
T Consensus 73 ivV~v~~~~~~~~~~~~R~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~~~r~~i~G~S~GG 152 (278)
T 2gzs_A 73 VIVAVGYQTNLPFDLNSRAYDYTPAAESRKTDLHSGRFSRKSGGSNNFRQLLETRIAPKVEQGLNIDRQRRGLWGHSYGG 152 (278)
T ss_dssp EEEEEEESSSSSCCHHHHHHHTCCGGGGTTCSCC-----CCCCCHHHHHHHHHHTHHHHHTTTSCEEEEEEEEEEETHHH
T ss_pred EEEEEcCCCCCcCcccccccccCCCCccccccccccCcCCCcCCHHHHHHHHHHHHHHHHHHhccCCCCceEEEEECHHH
Confidence 66643322110 00000000 000111111111 23344444455899999999999999
Q ss_pred HHHHHHHHhCCCceeEEEeccCCCCCCC-----------------CCc--------------------cchHHHHHHHHH
Q 005240 614 FMTAHLLAHAPHLFCCGIARSGSYNKTL-----------------TPF--------------------GFQAERFFDALK 656 (706)
Q Consensus 614 ~~a~~~~~~~p~~~~a~v~~~~~~d~~~-----------------~~~--------------------~~~~~~~~~~l~ 656 (706)
++|++++.+ |++|+++++.+|...+.. .+. .-+.++++++|+
T Consensus 153 ~~a~~~~~~-p~~f~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~~d~~~~~~~~~~~~~~~~~~~~~~L~ 231 (278)
T 2gzs_A 153 LFVLDSWLS-SSYFRSYYSASPSLGRGYDALLSRVTAVEPLQFCTKHLAIMEGSATQGDNRETHAVGVLSKIHTTLTILK 231 (278)
T ss_dssp HHHHHHHHH-CSSCSEEEEESGGGSTTHHHHHHHHHTSCTTTTTTCEEEEEECCC-----------CHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-ccccCeEEEeCcchhcCcchHHHHHHHhhccCCCCCcEEEEecCccccccccchhhhhHHHHHHHHHHHH
Confidence 999999999 999999999998754320 000 012348999999
Q ss_pred hCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 005240 657 GHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQK 693 (706)
Q Consensus 657 ~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~~~ 693 (706)
+.|+++++.+|||++|.+.. + ..+...++||.+
T Consensus 232 ~~g~~~~~~~~~g~~H~~~~---~-~~~~~~l~fl~~ 264 (278)
T 2gzs_A 232 DKGVNAVFWDFPNLGHGPMF---N-ASFRQALLDISG 264 (278)
T ss_dssp HTTCCEEEEECTTCCHHHHH---H-HHHHHHHHHHTT
T ss_pred cCCCeeEEEEcCCCCccchh---H-HHHHHHHHHHhh
Confidence 99999999999999998542 2 223445667665
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.47 E-value=3.2e-11 Score=128.20 Aligned_cols=249 Identities=11% Similarity=0.109 Sum_probs=159.9
Q ss_pred cceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCcc
Q 005240 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~ 84 (706)
..|+|+++.. |+...+........+..++|||||+.|+.... ...|.++++.+++..+.......
T Consensus 113 ~~v~lw~~~~----~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~- 177 (401)
T 4aez_A 113 RNVYVWNADS----GSVSALAETDESTYVASVKWSHDGSFLSVGLG----------NGLVDIYDVESQTKLRTMAGHQA- 177 (401)
T ss_dssp TEEEEEETTT----CCEEEEEECCTTCCEEEEEECTTSSEEEEEET----------TSCEEEEETTTCCEEEEECCCSS-
T ss_pred CeEEEeeCCC----CcEeEeeecCCCCCEEEEEECCCCCEEEEECC----------CCeEEEEECcCCeEEEEecCCCC-
Confidence 4688999977 77776665544556889999999999988653 24677888887765544322211
Q ss_pred ccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc
Q 005240 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (706)
Q Consensus 85 ~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l 164 (706)
.+..+.| +++.|+..+. .+.|.++++
T Consensus 178 ---~v~~~~~--~~~~l~~~~~-------------------------------------------------dg~i~i~d~ 203 (401)
T 4aez_A 178 ---RVGCLSW--NRHVLSSGSR-------------------------------------------------SGAIHHHDV 203 (401)
T ss_dssp ---CEEEEEE--ETTEEEEEET-------------------------------------------------TSEEEEEET
T ss_pred ---ceEEEEE--CCCEEEEEcC-------------------------------------------------CCCEEEEec
Confidence 2667788 5566666532 157778888
Q ss_pred C-C-C-ceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeE-EcccCCCCCCCCcccCc
Q 005240 165 D-G-T-AKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR-ELCDLPPAEDIPVCYNS 239 (706)
Q Consensus 165 ~-g-~-~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~~~~~p~~~~~ 239 (706)
. + . ...+... ..+..++|+|||+.|+..+.. ..|.+||+..++.. .+....
T Consensus 204 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-------------~~v~iwd~~~~~~~~~~~~~~----------- 259 (401)
T 4aez_A 204 RIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGND-------------NVVQIWDARSSIPKFTKTNHN----------- 259 (401)
T ss_dssp TSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETT-------------SCEEEEETTCSSEEEEECCCS-----------
T ss_pred ccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCC-------------CeEEEccCCCCCccEEecCCc-----------
Confidence 4 3 2 3344433 678899999999999876544 37999999865443 332221
Q ss_pred cCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeec
Q 005240 240 VREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWY 319 (706)
Q Consensus 240 ~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~ 319 (706)
..+..+.|+|++.. ++.... +. ....|.+||+ .+++..........+..+.|+|+++.|+.....
T Consensus 260 --~~v~~~~~~p~~~~-ll~~~~--gs-------~d~~i~i~d~---~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~ 324 (401)
T 4aez_A 260 --AAVKAVAWCPWQSN-LLATGG--GT-------MDKQIHFWNA---ATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGF 324 (401)
T ss_dssp --SCCCEEEECTTSTT-EEEEEC--CT-------TTCEEEEEET---TTCCEEEEEECSSCEEEEEECSSSSEEEEEECT
T ss_pred --ceEEEEEECCCCCC-EEEEec--CC-------CCCEEEEEEC---CCCCEEEEEeCCCcEEEEEECCCCCeEEEEeec
Confidence 22458899999988 543321 00 1235888998 566655555566788999999999999886422
Q ss_pred cccceEEEEEcCCCCCCCceee--ecCcccccccCCCCCceEeccCCCEEEEee
Q 005240 320 KTSQTRTWLVCPGSKDVAPRVL--FDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 320 ~~~~~~l~~~d~~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 371 (706)
.++ .|.++++.++ +...+ .... ......+.|+|||++|+...
T Consensus 325 ~dg--~i~v~~~~~~--~~~~~~~~~~h------~~~v~~~~~s~dg~~l~s~~ 368 (401)
T 4aez_A 325 PDN--NLSIWSYSSS--GLTKQVDIPAH------DTRVLYSALSPDGRILSTAA 368 (401)
T ss_dssp TTC--EEEEEEEETT--EEEEEEEEECC------SSCCCEEEECTTSSEEEEEC
T ss_pred CCC--cEEEEecCCc--cceeEEEecCC------CCCEEEEEECCCCCEEEEEe
Confidence 333 4555555553 12222 1111 11233478999999887764
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=9.2e-12 Score=130.57 Aligned_cols=275 Identities=9% Similarity=-0.027 Sum_probs=142.4
Q ss_pred ceeEeecCCCCCCCCeeeeecCC--CCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcC-CCceeecccCCC
Q 005240 6 GIGIHRLLPDDSLGPEKEVHGYP--DGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAE-TGEAKPLFESPD 82 (706)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~i~~~~--~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~-~g~~~~lt~~~~ 82 (706)
+|++.+++. +.|+.+.+...+ .......++|||||++|+.+. .+ .|.+++++ +|+..++.....
T Consensus 15 ~i~~~~~d~--~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~---------~~--~v~~~~~~~~g~~~~~~~~~~ 81 (365)
T 1jof_A 15 AIFTVQFDD--EKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAA---------MK--KWSSFAVKSPTEIVHEASHPI 81 (365)
T ss_dssp EEEEEEEET--TTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEE---------BT--EEEEEEEEETTEEEEEEEEEC
T ss_pred cEEEEEEEC--CCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEc---------cc--eEEEEEECCCCCEEEeeEeec
Confidence 578877765 457766665332 223577899999999886543 22 67777765 676655432211
Q ss_pred ccccccccceEEecCCcEE-EEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEE
Q 005240 83 ICLNAVFGSFVWVNNSTLL-IFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (706)
Q Consensus 83 ~~~~~~~~~~~wSpDg~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~ 161 (706)
. ..+..+.|||||++| ++.... ... . .|... .+..+ +...+|.
T Consensus 82 ~---g~~~~~~~spdg~~l~~~~~~~--~~~-----------~------------~~~~~-~~~~~-------g~v~v~~ 125 (365)
T 1jof_A 82 G---GHPRANDADTNTRAIFLLAAKQ--PPY-----------A------------VYANP-FYKFA-------GYGNVFS 125 (365)
T ss_dssp C---SSGGGGCTTSCCEEEEEEECSS--TTC-----------C------------EEEEE-ESSSC-------CEEEEEE
T ss_pred C---CCCccEEECCCCCEEEEEEecC--Ccc-----------e------------eccce-eecCC-------ceEEEEc
Confidence 0 014568999999964 344320 000 0 00000 00000 1123444
Q ss_pred EccCCCce-ecC-----CCceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecC-CCeeEEcccCCCCCCCC
Q 005240 162 GSLDGTAK-DFG-----TPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD-GKLVRELCDLPPAEDIP 234 (706)
Q Consensus 162 ~~l~g~~~-~lt-----~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~l~~~~~~~~~p 234 (706)
++.+|+.. .+. .......++|||||++|++.... ...|++|+++ +++.+.+.......
T Consensus 126 ~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~------------~~~v~~~~~~~~g~~~~~~~~~~~~--- 190 (365)
T 1jof_A 126 VSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLT------------ANKLWTHRKLASGEVELVGSVDAPD--- 190 (365)
T ss_dssp ECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT------------TTEEEEEEECTTSCEEEEEEEECSS---
T ss_pred cCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCC------------CCEEEEEEECCCCCEEEeeeEecCC---
Confidence 44356432 222 22567889999999998755422 2479999998 66554432211000
Q ss_pred cccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCce----EEeecc----c-------
Q 005240 235 VCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPE----ILHKLD----L------- 299 (706)
Q Consensus 235 ~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~----~l~~~~----~------- 299 (706)
...+++.++|||||+. ||... ... +.+.+++.++ ++++.. .+...+ +
T Consensus 191 -----~g~~p~~~~~spdg~~-l~v~~-~~~----------~~v~v~~~~~-~~g~~~~~~~~~~~~~~~~~g~~~~~~~ 252 (365)
T 1jof_A 191 -----PGDHPRWVAMHPTGNY-LYALM-EAG----------NRICEYVIDP-ATHMPVYTHHSFPLIPPGIPDRDPETGK 252 (365)
T ss_dssp -----TTCCEEEEEECTTSSE-EEEEE-TTT----------TEEEEEEECT-TTCCEEEEEEEEESSCTTCCCBCTTTSS
T ss_pred -----CCCCCCEeEECCCCCE-EEEEE-CCC----------CeEEEEEEeC-CCCcEEEccceEEcCCCCcCCccccccc
Confidence 0023567899999997 66542 211 1233433311 345532 122111 1
Q ss_pred --ccccce-ecCCCceEEEEeecccc----ceEEEEEcCCCCCCCceee---ecCcccccccCCCCCceEecc---CCCE
Q 005240 300 --RFRSVS-WCDDSLALVNETWYKTS----QTRTWLVCPGSKDVAPRVL---FDRVFENVYSDPGSPMMTRTS---TGTN 366 (706)
Q Consensus 300 --~~~~~~-wspDg~~l~~~~~~~~~----~~~l~~~d~~~~~~~~~~l---~~~~~~~~~~~~~~~~~~~s~---dg~~ 366 (706)
....+. |||||+.|+......+. ...+|.++. + ++...+ ..... . +...++++| ||++
T Consensus 253 ~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~-~--g~~~~~~~~~~~~~----~--~~~~~a~sp~~~dg~~ 323 (365)
T 1jof_A 253 GLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRD-C--GSIEKQLFLSPTPT----S--GGHSNAVSPCPWSDEW 323 (365)
T ss_dssp BSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECT-T--SCEEEEEEEEECSS----C--CTTCCCEEECTTCTTE
T ss_pred ccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECC-C--CCEEEeeeeeecCC----C--CcccceecCCCcCCCE
Confidence 356788 99999988755322211 344555543 3 233322 11110 0 112356789 8999
Q ss_pred EEEee
Q 005240 367 VIAKI 371 (706)
Q Consensus 367 l~~~~ 371 (706)
|++..
T Consensus 324 l~v~~ 328 (365)
T 1jof_A 324 MAITD 328 (365)
T ss_dssp EEEEC
T ss_pred EEEEE
Confidence 87764
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.47 E-value=3.3e-11 Score=124.42 Aligned_cols=289 Identities=10% Similarity=0.016 Sum_probs=158.1
Q ss_pred cccceeeCCCC-CeEEEEeeccccccccCCceeEEEEEcCCCc-----eee-cccCCCccccccccceEEecCCcEEEEE
Q 005240 32 KINFVSWSPDG-KRIAFSVRVDEEDNVSSCKLRVWIADAETGE-----AKP-LFESPDICLNAVFGSFVWVNNSTLLIFT 104 (706)
Q Consensus 32 ~~~~~~~SPDG-~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~-----~~~-lt~~~~~~~~~~~~~~~wSpDg~~l~~~ 104 (706)
.+..++||||+ +.||-.+. ++ .|.++|+..++ ..+ +..+.. .+..+.|+|||++|+..
T Consensus 40 ~V~~v~~sp~~~~~l~S~s~--------D~--~i~vWd~~~~~~~~~~~~~~l~~h~~-----~V~~~~~s~dg~~l~s~ 104 (340)
T 4aow_A 40 WVTQIATTPQFPDMILSASR--------DK--TIIMWKLTRDETNYGIPQRALRGHSH-----FVSDVVISSDGQFALSG 104 (340)
T ss_dssp CEEEEEECTTCTTEEEEEET--------TS--CEEEEEECCSSSCSEEEEEEECCCSS-----CEEEEEECTTSSEEEEE
T ss_pred CEEEEEEeCCCCCEEEEEcC--------CC--eEEEEECCCCCcccceeeEEEeCCCC-----CEEEEEECCCCCEEEEE
Confidence 58899999985 56655432 44 45555554432 111 221122 37789999999998876
Q ss_pred ecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCC-C-ceecCCC-ceEeeee
Q 005240 105 IPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-T-AKDFGTP-AVYTAVE 181 (706)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g-~-~~~lt~~-~~~~~~~ 181 (706)
..+ +.|..++... . ....... .......
T Consensus 105 ~~d-------------------------------------------------~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (340)
T 4aow_A 105 SWD-------------------------------------------------GTLRLWDLTTGTTTRRFVGHTKDVLSVA 135 (340)
T ss_dssp ETT-------------------------------------------------SEEEEEETTTTEEEEEEECCSSCEEEEE
T ss_pred ccc-------------------------------------------------ccceEEeecccceeeeecCCCCceeEEE
Confidence 421 4566666633 2 2222222 4566778
Q ss_pred eCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEE
Q 005240 182 PSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVE 261 (706)
Q Consensus 182 ~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~ 261 (706)
++|+++.|+..+.+ ..+.+|++.+............ .....+.|++++...++...
T Consensus 136 ~~~~~~~l~s~s~d-------------~~~~~~d~~~~~~~~~~~~~~~-----------~~v~~~~~~~~~~~~~~~s~ 191 (340)
T 4aow_A 136 FSSDNRQIVSGSRD-------------KTIKLWNTLGVCKYTVQDESHS-----------EWVSCVRFSPNSSNPIIVSC 191 (340)
T ss_dssp ECTTSSCEEEEETT-------------SCEEEECTTSCEEEEECSSSCS-----------SCEEEEEECSCSSSCEEEEE
T ss_pred EeecCccceeecCC-------------CeEEEEEeCCCceEEEEecccc-----------CcccceEEccCCCCcEEEEE
Confidence 99999998765543 3688999876544333221111 11335688888766343332
Q ss_pred eccCCCCccccCccceeeeecCCCCCCCCce-EEeecccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCcee
Q 005240 262 AQDRGDANVEVSPRDIIYTQPAEPAEGEKPE-ILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRV 340 (706)
Q Consensus 262 ~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~-~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~ 340 (706)
.. ...|.++|+ ..++.. .+......+..+.|+||++.|+..+. ...|.++|+.+. +...
T Consensus 192 ~~-----------d~~i~i~d~---~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~----Dg~i~iwd~~~~--~~~~ 251 (340)
T 4aow_A 192 GW-----------DKLVKVWNL---ANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGK----DGQAMLWDLNEG--KHLY 251 (340)
T ss_dssp ET-----------TSCEEEEET---TTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TCEEEEEETTTT--EEEE
T ss_pred cC-----------CCEEEEEEC---CCCceeeEecCCCCcEEEEEECCCCCEEEEEeC----CCeEEEEEeccC--ceee
Confidence 11 124778887 444433 34455677889999999998887652 234666777763 2222
Q ss_pred eecCcccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeeecccchhhhh
Q 005240 341 LFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFE 420 (706)
Q Consensus 341 l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~ 420 (706)
..... . ....+.++|++..++...+ + .+..+|+.++.......... ...
T Consensus 252 ~~~~~-~------~v~~~~~~~~~~~~~~~~d-----~-----------------~i~iwd~~~~~~~~~~~~~~--~~~ 300 (340)
T 4aow_A 252 TLDGG-D------IINALCFSPNRYWLCAATG-----P-----------------SIKIWDLEGKIIVDELKQEV--IST 300 (340)
T ss_dssp EEECS-S------CEEEEEECSSSSEEEEEET-----T-----------------EEEEEETTTTEEEEEECCC------
T ss_pred eecCC-c------eEEeeecCCCCceeeccCC-----C-----------------EEEEEECCCCeEEEeccccc--eee
Confidence 22211 0 1123567888876655431 1 24445555443222211110 000
Q ss_pred hhhhhccCCCceecccCCCEEEEEEecCCCCcEEEEEECCCCc
Q 005240 421 TAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKK 463 (706)
Q Consensus 421 ~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~p~~v~~~~~~~~~ 463 (706)
............+|+|||+.|+....+. .|++|++++|+
T Consensus 301 ~~~~h~~~v~~l~~s~dg~~l~sgs~Dg----~v~iW~~~tGt 339 (340)
T 4aow_A 301 SSKAEPPQCTSLAWSADGQTLFAGYTDN----LVRVWQVTIGT 339 (340)
T ss_dssp ---CCCCCEEEEEECTTSSEEEEEETTS----CEEEEEEEC--
T ss_pred eccCCCCCEEEEEECCCCCEEEEEeCCC----EEEEEeCCCcC
Confidence 0111112223578999998777554443 49999988874
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=99.47 E-value=7e-11 Score=120.36 Aligned_cols=268 Identities=13% Similarity=0.106 Sum_probs=158.6
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~ 111 (706)
.+..++|||||++|+.... + ..|.++|+++++..+....... .+....|+||+++|+..+.+
T Consensus 15 ~V~~~~fsp~~~~l~s~~~--------d--g~v~lWd~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~s~s~d---- 76 (304)
T 2ynn_A 15 RVKGIDFHPTEPWVLTTLY--------S--GRVELWNYETQVEVRSIQVTET----PVRAGKFIARKNWIIVGSDD---- 76 (304)
T ss_dssp CEEEEEECSSSSEEEEEET--------T--SEEEEEETTTTEEEEEEECCSS----CEEEEEEEGGGTEEEEEETT----
T ss_pred ceEEEEECCCCCEEEEEcC--------C--CcEEEEECCCCceeEEeeccCC----cEEEEEEeCCCCEEEEECCC----
Confidence 4889999999999987642 3 5677778888765443222211 26788999999998876431
Q ss_pred CCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCC-ceecCCC-ceEeeeeeCCCCcE
Q 005240 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGTP-AVYTAVEPSPDQKY 188 (706)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~-~~~lt~~-~~~~~~~~SpDG~~ 188 (706)
+.|.++++ +++ ...+... ..+..++|+|++++
T Consensus 77 ---------------------------------------------~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 111 (304)
T 2ynn_A 77 ---------------------------------------------FRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPY 111 (304)
T ss_dssp ---------------------------------------------SEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSE
T ss_pred ---------------------------------------------CEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCE
Confidence 56778888 563 3444444 67899999999999
Q ss_pred EEEEeeccCcccccccccccceEEEEecCCC-eeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCC
Q 005240 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGK-LVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGD 267 (706)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~ 267 (706)
|+..+.+ ..|.+||+..+ .......... ..+..++|+|++...|+ ....+
T Consensus 112 l~sgs~D-------------~~v~lWd~~~~~~~~~~~~~h~------------~~v~~v~~~p~~~~~l~-sgs~D--- 162 (304)
T 2ynn_A 112 VLSGSDD-------------LTVKLWNWENNWALEQTFEGHE------------HFVMCVAFNPKDPSTFA-SGCLD--- 162 (304)
T ss_dssp EEEEETT-------------SCEEEEEGGGTTEEEEEECCCC------------SCEEEEEECTTCTTEEE-EEETT---
T ss_pred EEEECCC-------------CeEEEEECCCCcchhhhhcccC------------CcEEEEEECCCCCCEEE-EEeCC---
Confidence 8755543 37999999854 3333222111 12447899995443144 22111
Q ss_pred CccccCccceeeeecCCCCCCCCc-eEEee-cccccccceecC--CCceEEEEeeccccceEEEEEcCCCCCCCceeeec
Q 005240 268 ANVEVSPRDIIYTQPAEPAEGEKP-EILHK-LDLRFRSVSWCD--DSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFD 343 (706)
Q Consensus 268 ~~~~~~~~~~l~~~d~~~~~~~~~-~~l~~-~~~~~~~~~wsp--Dg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~ 343 (706)
..|.+||+ ..+.. ..+.. ....+..+.|+| |+..|+..+. ...|.++|+.++ +....+.
T Consensus 163 --------~~v~iwd~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~----D~~i~iWd~~~~--~~~~~~~ 225 (304)
T 2ynn_A 163 --------RTVKVWSL---GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD----DLTIKIWDYQTK--SCVATLE 225 (304)
T ss_dssp --------SEEEEEET---TCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEET----TSEEEEEETTTT--EEEEEEE
T ss_pred --------CeEEEEEC---CCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcC----CCeEEEEeCCCC--ccceeeC
Confidence 24778887 33333 33332 334566677776 6777776552 224666777763 2222222
Q ss_pred CcccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeeecccchhhhhhhh
Q 005240 344 RVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAV 423 (706)
Q Consensus 344 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~ 423 (706)
..... ...+.|+|++..|+....+ ..+..+|+.+++..+......
T Consensus 226 ~h~~~------v~~~~~~p~~~~l~s~s~D---------------------g~i~iWd~~~~~~~~~~~~~~-------- 270 (304)
T 2ynn_A 226 GHMSN------VSFAVFHPTLPIIISGSED---------------------GTLKIWNSSTYKVEKTLNVGL-------- 270 (304)
T ss_dssp CCSSC------EEEEEECSSSSEEEEEETT---------------------SCEEEEETTTCCEEEEECCSS--------
T ss_pred CCCCC------EEEEEECCCCCEEEEEcCC---------------------CeEEEEECCCCceeeeccCCC--------
Confidence 22111 1236789999987665421 136667877776554443321
Q ss_pred hhccCCCceecccCCCE-EEEEEe
Q 005240 424 ALVFGQGEEDINLNQLK-ILTSKE 446 (706)
Q Consensus 424 ~~~~~~~~~~~s~Dg~~-l~~~~~ 446 (706)
......+|+|+++. ++.+..
T Consensus 271 ---~~~~~~~~~~~~~~~~~asg~ 291 (304)
T 2ynn_A 271 ---ERSWCIATHPTGRKNYIASGF 291 (304)
T ss_dssp ---SSEEEEEECTTCGGGCEEEEE
T ss_pred ---ccEEEEEECCCCCceEEEEec
Confidence 11224577888754 344443
|
| >1r88_A MPT51/MPB51 antigen; ALFA/beta hydrolase fold, FBPC1, immune system; 1.71A {Mycobacterium tuberculosis} SCOP: c.69.1.3 | Back alignment and structure |
|---|
Probab=99.46 E-value=3.6e-12 Score=128.14 Aligned_cols=193 Identities=11% Similarity=0.042 Sum_probs=128.5
Q ss_pred CCceEEEEEEcc-CCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeE
Q 005240 479 SLQKEMIKYQRK-DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFA 557 (706)
Q Consensus 479 ~~~~~~~~~~~~-dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~ 557 (706)
..+.+.+++.+. +|.+++.+ |+|++ + |+||++||++... ....|... ....+.+++.||+
T Consensus 8 ~~~~~~~~~~S~~~~~~~~~~-~~P~~-------~-p~vvllHG~~~~~------~~~~w~~~----~~~~~~~~~~~~~ 68 (280)
T 1r88_A 8 AAPYENLMVPSPSMGRDIPVA-FLAGG-------P-HAVYLLDAFNAGP------DVSNWVTA----GNAMNTLAGKGIS 68 (280)
T ss_dssp CCCCEEEEEEETTTTEEEEEE-EECCS-------S-SEEEEECCSSCCS------SSCHHHHT----SCHHHHHTTSSSE
T ss_pred CCCEEEEEEECcccCCcceEE-EeCCC-------C-CEEEEECCCCCCC------Chhhhhhc----ccHHHHHhcCCeE
Confidence 456788888875 78899998 78864 2 7999999974210 00011100 0134566778999
Q ss_pred EEEcCCCCcCCCCCCCC-c-hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccC
Q 005240 558 VLAGPSIPIIGEGDKLP-N-DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSG 635 (706)
Q Consensus 558 v~~~~~~~~~g~g~~~~-~-~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~ 635 (706)
|++++..++.++..... . ..+.....+|+.. ++.++..+|+++++|+|+||||++|+.++.++|++|+++++.+|
T Consensus 69 vv~pd~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~i~~~~~~~~~~~~l~G~S~GG~~al~~a~~~p~~~~~~v~~sg 145 (280)
T 1r88_A 69 VVAPAGGAYSMYTNWEQDGSKQWDTFLSAELPD---WLAANRGLAPGGHAAVGAAQGGYGAMALAAFHPDRFGFAGSMSG 145 (280)
T ss_dssp EEEECCCTTSTTSBCSSCTTCBHHHHHHTHHHH---HHHHHSCCCSSCEEEEEETHHHHHHHHHHHHCTTTEEEEEEESC
T ss_pred EEEECCCCCCccCCCCCCCCCcHHHHHHHHHHH---HHHHHCCCCCCceEEEEECHHHHHHHHHHHhCccceeEEEEECC
Confidence 99988755444321101 1 1233333444444 44443447889999999999999999999999999999999998
Q ss_pred CCCCCC-----------------------------------------------CC----c----c---c-----------
Q 005240 636 SYNKTL-----------------------------------------------TP----F----G---F----------- 646 (706)
Q Consensus 636 ~~d~~~-----------------------------------------------~~----~----~---~----------- 646 (706)
.++... .| . . .
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~~~~~~~pv~i~~~~~~G~~D~~~~~~~~~~~~ 225 (280)
T 1r88_A 146 FLYPSNTTTNGAIAAGMQQFGGVDTNGMWGAPQLGRWKWHDPWVHASLLAQNNTRVWVWSPTNPGASDPAAMIGQAAEAM 225 (280)
T ss_dssp CCCTTSHHHHHHHHHHHHHHHCCCTHHHHCCGGGSTTGGGCTTTTHHHHHHTTCEEEEECCSSCCCSSGGGGTTCHHHHH
T ss_pred ccCcCCccchhhHHHHhhhccccchhhhcCCCchhhhHhcCHHHHHHhhhccCCeEEEEeccCCCCCCcccccchhHHHH
Confidence 764210 01 1 1 0
Q ss_pred -hHHHHHHHHHhCC-CcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHhc
Q 005240 647 -QAERFFDALKGHG-ALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCL 696 (706)
Q Consensus 647 -~~~~~~~~l~~~~-~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~~~~l~ 696 (706)
+.++|+++|++.| +++++.+|++++|.+.. +...+...+.||.+-|.
T Consensus 226 ~~~~~~~~~L~~~g~~~~~~~~~~~g~H~~~~---w~~~l~~~l~~~~~~~~ 274 (280)
T 1r88_A 226 GNSRMFYNQYRSVGGHNGHFDFPASGDNGWGS---WAPQLGAMSGDIVGAIR 274 (280)
T ss_dssp HHHHHHHHHHHHTTCCSEEEECCSSCCSSHHH---HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCcceEEEecCCCCcChhH---HHHHHHHHHHHHHHHHh
Confidence 1237999999999 99999999888998642 44556677777777554
|
| >1lns_A X-prolyl dipeptidyl aminopetidase; alpha beta hydrolase fold; 2.20A {Lactococcus lactis} SCOP: a.40.2.1 b.18.1.13 c.69.1.21 | Back alignment and structure |
|---|
Probab=99.46 E-value=2.7e-14 Score=162.60 Aligned_cols=89 Identities=18% Similarity=0.079 Sum_probs=69.1
Q ss_pred hHHHHHHHCCeEEEEcCCCCcCCCCCCCCc-hhhHHHHHHHHHHHHHHHHHc--C------------CCCCCcEEEEEec
Q 005240 546 TSSLIFLARRFAVLAGPSIPIIGEGDKLPN-DRFVEQLVSSAEAAVEEVVRR--G------------VADPSRIAVGGHS 610 (706)
Q Consensus 546 ~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~-~~~~~~~~~D~~~~~~~l~~~--~------------~id~~~i~i~G~S 610 (706)
...+.|+++||+|+..+.||. |.+... ..+.....+|+.++++||.++ + ..+..||+++|+|
T Consensus 272 ~~~~~la~~GYaVv~~D~RG~---G~S~G~~~~~~~~e~~D~~a~IdwL~~~~~~~~d~~~~~~v~q~~~~grVgl~G~S 348 (763)
T 1lns_A 272 SLNDYFLTRGFASIYVAGVGT---RSSDGFQTSGDYQQIYSMTAVIDWLNGRARAYTSRKKTHEIKASWANGKVAMTGKS 348 (763)
T ss_dssp HHHHHHHTTTCEEEEECCTTS---TTSCSCCCTTSHHHHHHHHHHHHHHTTSSCEESSTTCCCEECCTTEEEEEEEEEET
T ss_pred chHHHHHHCCCEEEEECCCcC---CCCCCcCCCCCHHHHHHHHHHHHHHhhcccccccccccccccccCCCCcEEEEEEC
Confidence 346889999999999777754 333221 122335689999999999853 1 1345799999999
Q ss_pred hHHHHHHHHHHhCCCceeEEEeccCCC
Q 005240 611 YGAFMTAHLLAHAPHLFCCGIARSGSY 637 (706)
Q Consensus 611 ~GG~~a~~~~~~~p~~~~a~v~~~~~~ 637 (706)
|||++++.+++++|+.++|+|+.+|+.
T Consensus 349 yGG~ial~~Aa~~p~~lkaiV~~~~~~ 375 (763)
T 1lns_A 349 YLGTMAYGAATTGVEGLELILAEAGIS 375 (763)
T ss_dssp HHHHHHHHHHTTTCTTEEEEEEESCCS
T ss_pred HHHHHHHHHHHhCCcccEEEEEecccc
Confidence 999999999999999999999998875
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=1e-11 Score=129.21 Aligned_cols=234 Identities=9% Similarity=0.001 Sum_probs=138.8
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecC---CcEEEEEecCC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNN---STLLIFTIPSS 108 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpD---g~~l~~~~~~~ 108 (706)
.+..++|||||++++.+...+ .+...|.++++++++...+..... ...+..+.|+|+ |++|+....
T Consensus 20 ~v~~~~~~p~~~~l~~~~s~~------~~d~~v~iw~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~l~~~~~-- 88 (357)
T 3i2n_A 20 TVFDCKWVPCSAKFVTMGNFA------RGTGVIQLYEIQHGDLKLLREIEK---AKPIKCGTFGATSLQQRYLATGDF-- 88 (357)
T ss_dssp CEEEEEECTTSSEEEEEEC--------CCCEEEEEEEECSSSEEEEEEEEE---SSCEEEEECTTCCTTTCCEEEEET--
T ss_pred ceEEEEEcCCCceEEEecCcc------CCCcEEEEEeCCCCcccceeeecc---cCcEEEEEEcCCCCCCceEEEecC--
Confidence 588999999999887765310 134678888988887655432111 113778999999 687776642
Q ss_pred CCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCC--ceecCCC-ceEeee----
Q 005240 109 RRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT--AKDFGTP-AVYTAV---- 180 (706)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~--~~~lt~~-~~~~~~---- 180 (706)
.+.|.++++ +++ ...+... ..+..+
T Consensus 89 -----------------------------------------------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 121 (357)
T 3i2n_A 89 -----------------------------------------------GGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIG 121 (357)
T ss_dssp -----------------------------------------------TSCEEEECTTSCSSCSEEECCCSSCEEEEEEES
T ss_pred -----------------------------------------------CCeEEEEeCCCCCccEEEEEecccceEEEeecc
Confidence 156777788 333 3344433 455555
Q ss_pred --eeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCe--eEEcccCCCCCCCCcccCccCCCCccee----eecC
Q 005240 181 --EPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL--VRELCDLPPAEDIPVCYNSVREGMRSIS----WRAD 252 (706)
Q Consensus 181 --~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~l~~~~~~~~~p~~~~~~~~g~~~~~----~spd 252 (706)
+|+|||+.|+..+.. ..|.+|++..++ ...+....+.... ....+. |+|+
T Consensus 122 ~~~~s~~~~~l~~~~~d-------------~~i~vwd~~~~~~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~~ 179 (357)
T 3i2n_A 122 GLGIGEGAPEIVTGSRD-------------GTVKVWDPRQKDDPVANMEPVQGENKR---------DCWTVAFGNAYNQE 179 (357)
T ss_dssp GGGCC-CCCEEEEEETT-------------SCEEEECTTSCSSCSEEECCCTTSCCC---------CEEEEEEECCCC-C
T ss_pred ccccCCCccEEEEEeCC-------------CeEEEEeCCCCCCcceeccccCCCCCC---------ceEEEEEEeccCCC
Confidence 679999998866543 379999998553 3444332221111 122334 8899
Q ss_pred CCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecC---CCceEEEEeeccccceEEEEE
Q 005240 253 KPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCD---DSLALVNETWYKTSQTRTWLV 329 (706)
Q Consensus 253 g~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wsp---Dg~~l~~~~~~~~~~~~l~~~ 329 (706)
++. |+... . ...|.++|+ .+++..........+..+.|+| ++..|+....+ + .|.++
T Consensus 180 ~~~-l~~~~-~-----------d~~i~i~d~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d--g--~i~i~ 239 (357)
T 3i2n_A 180 ERV-VCAGY-D-----------NGDIKLFDL---RNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLE--G--KFHVF 239 (357)
T ss_dssp CCE-EEEEE-T-----------TSEEEEEET---TTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEEST--T--EEEEE
T ss_pred CCE-EEEEc-c-----------CCeEEEEEC---ccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCC--C--eEEEE
Confidence 986 54331 1 125888988 5666655566678889999999 88888876422 2 45556
Q ss_pred cCCCCCCCceee---ecCcccccccCCCCCceEeccCCCEEEEee
Q 005240 330 CPGSKDVAPRVL---FDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 330 d~~~~~~~~~~l---~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 371 (706)
|+.+++...... ...... ....+.|+|+|+.+++..
T Consensus 240 d~~~~~~~~~~~~~~~~~~~~------~v~~~~~~~~~~~~l~~~ 278 (357)
T 3i2n_A 240 DMRTQHPTKGFASVSEKAHKS------TVWQVRHLPQNRELFLTA 278 (357)
T ss_dssp EEEEEETTTEEEEEEEECCSS------CEEEEEEETTEEEEEEEE
T ss_pred eCcCCCcccceeeeccCCCcC------CEEEEEECCCCCcEEEEE
Confidence 655432111110 001111 123477899998544444
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.44 E-value=1.9e-11 Score=126.69 Aligned_cols=292 Identities=10% Similarity=-0.009 Sum_probs=157.9
Q ss_pred cceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCCC
Q 005240 34 NFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPP 113 (706)
Q Consensus 34 ~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~ 113 (706)
..++++++++.++.. .....|+++|+++++..+....+.. ..+..+.|+|||+.+++...
T Consensus 3 ~g~~~~~~~~~~v~~----------~~~~~v~~~d~~~~~~~~~~~~~~~---~~~~~~~~s~dg~~~~v~~~------- 62 (349)
T 1jmx_B 3 TGPALKAGHEYMIVT----------NYPNNLHVVDVASDTVYKSCVMPDK---FGPGTAMMAPDNRTAYVLNN------- 62 (349)
T ss_dssp -CCCCCTTCEEEEEE----------ETTTEEEEEETTTTEEEEEEECSSC---CSSCEEEECTTSSEEEEEET-------
T ss_pred ccccccCCCEEEEEe----------CCCCeEEEEECCCCcEEEEEecCCC---CCCceeEECCCCCEEEEEeC-------
Confidence 356788877665443 2347899999998876554332220 01568899999998776632
Q ss_pred CCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCCce-ecCCC-------ceEeeeeeCC
Q 005240 114 KKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAK-DFGTP-------AVYTAVEPSP 184 (706)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~~-~lt~~-------~~~~~~~~Sp 184 (706)
....|+++++ +++.. .+... ..+..++|||
T Consensus 63 -----------------------------------------~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~sp 101 (349)
T 1jmx_B 63 -----------------------------------------HYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISP 101 (349)
T ss_dssp -----------------------------------------TTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECT
T ss_pred -----------------------------------------CCCcEEEEeCCCCcEEEEEEcccccccccccccceEECC
Confidence 1157888898 45433 33222 1256789999
Q ss_pred CCcEEEEEeeccCcccccccccccceEEEEecCCCeeEE-cccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEec
Q 005240 185 DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRE-LCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQ 263 (706)
Q Consensus 185 DG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~ 263 (706)
||++|++........ ...+......|++||+.+++... +..... + ..+..++|+|||+ |++..
T Consensus 102 dg~~l~~~~~~~~~~-~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~----~-------~~~~~~~~s~dg~--l~~~~-- 165 (349)
T 1jmx_B 102 DGKEVYATVNPTQRL-NDHYVVKPPRLEVFSTADGLEAKPVRTFPM----P-------RQVYLMRAADDGS--LYVAG-- 165 (349)
T ss_dssp TSSEEEEEEEEEEEC-SSCEEECCCEEEEEEGGGGGGBCCSEEEEC----C-------SSCCCEEECTTSC--EEEES--
T ss_pred CCCEEEEEccccccc-ccccccCCCeEEEEECCCccccceeeeccC----C-------CcccceeECCCCc--EEEcc--
Confidence 999998877431000 00000012589999998643221 111111 0 1234678999998 55421
Q ss_pred cCCCCccccCccceeeeecCCCCCCCCceEEeeccc-------------------------ccccceecCCCceEEEEee
Q 005240 264 DRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDL-------------------------RFRSVSWCDDSLALVNETW 318 (706)
Q Consensus 264 ~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~-------------------------~~~~~~wspDg~~l~~~~~ 318 (706)
..|+++|+ .+++......... ....+.+++|+......
T Consensus 166 ------------~~i~~~d~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-- 228 (349)
T 1jmx_B 166 ------------PDIYKMDV---KTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPAT-- 228 (349)
T ss_dssp ------------SSEEEECT---TTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CC--
T ss_pred ------------CcEEEEeC---CCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccc--
Confidence 02778887 5555544322111 00111222222111000
Q ss_pred ccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEecc-CCCEEEEeeeccCCcceEEEEecCCCCCCCCCCce
Q 005240 319 YKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTS-TGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFL 397 (706)
Q Consensus 319 ~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l 397 (706)
......++.+++.+++ ...+.-... ......+.++| ||+++++. .. .|
T Consensus 229 -~~~~~~~~~~~~~~~~--~~~~~~~~~-----~~~~~~~~~sp~dg~~l~~~-~~----------------------~v 277 (349)
T 1jmx_B 229 -ADLLYGYLSVDLKTGK--THTQEFADL-----TELYFTGLRSPKDPNQIYGV-LN----------------------RL 277 (349)
T ss_dssp -CEEEEEEEEEETTTCC--EEEEEEEEC-----SSCEEEEEECSSCTTEEEEE-ES----------------------EE
T ss_pred -cccceeEEEEeccCCc--EEecccccC-----CCcceeeEecCCCCCEEEEE-cC----------------------eE
Confidence 0122234457777743 332211110 00112466899 99988775 11 47
Q ss_pred eeeecCCCceeeeecccchhhhhhhhhhccCCCceecccCCCEEEEEEecCCCCcEEEEEECCCCceeE
Q 005240 398 DLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQ 466 (706)
Q Consensus 398 ~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~p~~v~~~~~~~~~~~~ 466 (706)
+.+|+.+++..+.+.... ....+.|||||++|+.. . .-..|++||+++++...
T Consensus 278 ~~~d~~~~~~~~~~~~~~------------~~~~~~~s~dg~~l~~~-~---~~~~v~v~d~~~~~~~~ 330 (349)
T 1jmx_B 278 AKYDLKQRKLIKAANLDH------------TYYCVAFDKKGDKLYLG-G---TFNDLAVFNPDTLEKVK 330 (349)
T ss_dssp EEEETTTTEEEEEEECSS------------CCCEEEECSSSSCEEEE-S---BSSEEEEEETTTTEEEE
T ss_pred EEEECccCeEEEEEcCCC------------CccceEECCCCCEEEEe-c---CCCeEEEEeccccceee
Confidence 788888887655544321 12357899999887763 2 22779999998876443
|
| >3b5e_A MLL8374 protein; NP_108484.1, carboxylesterase, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; 1.75A {Mesorhizobium loti} SCOP: c.69.1.14 | Back alignment and structure |
|---|
Probab=99.44 E-value=2.3e-12 Score=124.85 Aligned_cols=176 Identities=14% Similarity=0.073 Sum_probs=119.4
Q ss_pred CCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCC
Q 005240 491 DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEG 570 (706)
Q Consensus 491 dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g 570 (706)
++..+..+++.|.. . +.|+||++||.+.. ... ...+...|++ ||.|+.++..+..+.|
T Consensus 14 ~~~~l~~~~~~~~~---~---~~p~vv~lHG~g~~-----------~~~----~~~~~~~l~~-~~~vv~~d~~~~~~~g 71 (223)
T 3b5e_A 14 TDLAFPYRLLGAGK---E---SRECLFLLHGSGVD-----------ETT----LVPLARRIAP-TATLVAARGRIPQEDG 71 (223)
T ss_dssp CSSSSCEEEESTTS---S---CCCEEEEECCTTBC-----------TTT----THHHHHHHCT-TSEEEEECCSEEETTE
T ss_pred cCCCceEEEeCCCC---C---CCCEEEEEecCCCC-----------HHH----HHHHHHhcCC-CceEEEeCCCCCcCCc
Confidence 34566666654532 1 13899999996421 011 1133455554 9999987653321111
Q ss_pred CCCC--------chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCCCCC-
Q 005240 571 DKLP--------NDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTL- 641 (706)
Q Consensus 571 ~~~~--------~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d~~~- 641 (706)
..+. .........+|+.+.++++.++..+|+++++++|+|+||++++.++.++|++++++++.+|......
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~~~~~ 151 (223)
T 3b5e_A 72 FRWFERIDPTRFEQKSILAETAAFAAFTNEAAKRHGLNLDHATFLGYSNGANLVSSLMLLHPGIVRLAALLRPMPVLDHV 151 (223)
T ss_dssp EESSCEEETTEECHHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEETHHHHHHHHHHHHSTTSCSEEEEESCCCCCSSC
T ss_pred cccccccCCCcccHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcHHHHHHHHHHhCccccceEEEecCccCcccc
Confidence 1211 1223455678888888888876557899999999999999999999999999999999998765321
Q ss_pred -------CCcc------------chHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHh
Q 005240 642 -------TPFG------------FQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYC 695 (706)
Q Consensus 642 -------~~~~------------~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~~~~l 695 (706)
.|.. -..+ +++.|+..+.++++++|| ++|.+.. +..+.+.+||++.+
T Consensus 152 ~~~~~~~~P~li~~G~~D~~v~~~~~~-~~~~l~~~g~~~~~~~~~-~gH~~~~-----~~~~~i~~~l~~~~ 217 (223)
T 3b5e_A 152 PATDLAGIRTLIIAGAADETYGPFVPA-LVTLLSRHGAEVDARIIP-SGHDIGD-----PDAAIVRQWLAGPI 217 (223)
T ss_dssp CCCCCTTCEEEEEEETTCTTTGGGHHH-HHHHHHHTTCEEEEEEES-CCSCCCH-----HHHHHHHHHHHCC-
T ss_pred ccccccCCCEEEEeCCCCCcCCHHHHH-HHHHHHHCCCceEEEEec-CCCCcCH-----HHHHHHHHHHHhhh
Confidence 1110 1334 888899999999999999 9998852 34578889998755
|
| >1ufo_A Hypothetical protein TT1662; alpha-beta fold, hydrolase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.60A {Thermus thermophilus} SCOP: c.69.1.27 | Back alignment and structure |
|---|
Probab=99.44 E-value=2.9e-12 Score=124.95 Aligned_cols=176 Identities=16% Similarity=0.098 Sum_probs=122.7
Q ss_pred EEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCc
Q 005240 487 YQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPI 566 (706)
Q Consensus 487 ~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~ 566 (706)
+...+| ++.+++.|.+ +.|+||++||.+.. ...+ ..++..|+++||.|+.++.+|
T Consensus 7 ~~~~~g--~~~~~~~~~~-------~~~~vv~~hG~~~~-----------~~~~----~~~~~~l~~~G~~v~~~d~~g- 61 (238)
T 1ufo_A 7 RLTLAG--LSVLARIPEA-------PKALLLALHGLQGS-----------KEHI----LALLPGYAERGFLLLAFDAPR- 61 (238)
T ss_dssp EEEETT--EEEEEEEESS-------CCEEEEEECCTTCC-----------HHHH----HHTSTTTGGGTEEEEECCCTT-
T ss_pred ccccCC--EEEEEEecCC-------CccEEEEECCCccc-----------chHH----HHHHHHHHhCCCEEEEecCCC-
Confidence 333466 4556777864 25899999997421 0111 122345677899999977654
Q ss_pred CCCCCCCCc---hh----------hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEec
Q 005240 567 IGEGDKLPN---DR----------FVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIAR 633 (706)
Q Consensus 567 ~g~g~~~~~---~~----------~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~ 633 (706)
+|.+... .. ......+|+.++++++.+++. .+++++|+|+||.+++.++.++|+++++++..
T Consensus 62 --~g~s~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~---~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~~ 136 (238)
T 1ufo_A 62 --HGEREGPPPSSKSPRYVEEVYRVALGFKEEARRVAEEAERRFG---LPLFLAGGSLGAFVAHLLLAEGFRPRGVLAFI 136 (238)
T ss_dssp --STTSSCCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCEEEEEETHHHHHHHHHHHTTCCCSCEEEES
T ss_pred --CccCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHHhccC---CcEEEEEEChHHHHHHHHHHhccCcceEEEEe
Confidence 3433221 11 245678899999999987653 79999999999999999999999999998888
Q ss_pred cCCCCCC----------------------------CCCcc---------c---hHHHHHHHHH-hCCC-cEEEEEeCCCC
Q 005240 634 SGSYNKT----------------------------LTPFG---------F---QAERFFDALK-GHGA-LSRLVLLPFEH 671 (706)
Q Consensus 634 ~~~~d~~----------------------------~~~~~---------~---~~~~~~~~l~-~~~~-~~~~~~~~~~~ 671 (706)
++..... ..|.. . ..+++++.+. ..+. +++++++|+++
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (238)
T 1ufo_A 137 GSGFPMKLPQGQVVEDPGVLALYQAPPATRGEAYGGVPLLHLHGSRDHIVPLARMEKTLEALRPHYPEGRLARFVEEGAG 216 (238)
T ss_dssp CCSSCCCCCTTCCCCCHHHHHHHHSCGGGCGGGGTTCCEEEEEETTCTTTTHHHHHHHHHHHGGGCTTCCEEEEEETTCC
T ss_pred cCCccchhhhhhccCCcccchhhcCChhhhhhhccCCcEEEEECCCCCccCcHHHHHHHHHHhhcCCCCceEEEEeCCCC
Confidence 7643211 11110 0 2237888888 7777 89999999999
Q ss_pred ccCCCcccHHHHHHHHHHHHHHHhcc
Q 005240 672 HVYAARENVMHVIWETDRWLQKYCLS 697 (706)
Q Consensus 672 H~~~~~~~~~~~~~~~~~f~~~~l~~ 697 (706)
|.+.. +..+.+.+||+++|..
T Consensus 217 H~~~~-----~~~~~~~~~l~~~l~~ 237 (238)
T 1ufo_A 217 HTLTP-----LMARVGLAFLEHWLEA 237 (238)
T ss_dssp SSCCH-----HHHHHHHHHHHHHHHC
T ss_pred cccHH-----HHHHHHHHHHHHHHhc
Confidence 98753 4678899999998853
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.44 E-value=1.1e-11 Score=129.67 Aligned_cols=225 Identities=13% Similarity=0.032 Sum_probs=138.8
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCc---eeecccCCCccccccccceEEecCCcEEEEEecCC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE---AKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSS 108 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~---~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~ 108 (706)
.+..++|||||+.||+.. ....|.++++++++ ...+..+.. .+..+.|+|||++|+..+.+
T Consensus 10 ~i~~~~~s~~~~~l~~~~----------~d~~v~i~~~~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l~~~~~d- 73 (372)
T 1k8k_C 10 PISCHAWNKDRTQIAICP----------NNHEVHIYEKSGNKWVQVHELKEHNG-----QVTGVDWAPDSNRIVTCGTD- 73 (372)
T ss_dssp CCCEEEECTTSSEEEEEC----------SSSEEEEEEEETTEEEEEEEEECCSS-----CEEEEEEETTTTEEEEEETT-
T ss_pred CeEEEEECCCCCEEEEEe----------CCCEEEEEeCCCCcEEeeeeecCCCC-----cccEEEEeCCCCEEEEEcCC-
Confidence 488999999999998863 23577888888875 333332222 27789999999998876421
Q ss_pred CCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCCce---ecCCC-ceEeeeeeC
Q 005240 109 RRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAK---DFGTP-AVYTAVEPS 183 (706)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~~---~lt~~-~~~~~~~~S 183 (706)
+.|.++++ +++.. .+... ..+..++|+
T Consensus 74 ------------------------------------------------g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~ 105 (372)
T 1k8k_C 74 ------------------------------------------------RNAYVWTLKGRTWKPTLVILRINRAARCVRWA 105 (372)
T ss_dssp ------------------------------------------------SCEEEEEEETTEEEEEEECCCCSSCEEEEEEC
T ss_pred ------------------------------------------------CeEEEEECCCCeeeeeEEeecCCCceeEEEEC
Confidence 45677777 44322 22223 678899999
Q ss_pred CCCcEEEEEeeccCcccccccccccceEEEEecCCCe----eEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEE
Q 005240 184 PDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL----VRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYW 259 (706)
Q Consensus 184 pDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~ 259 (706)
|||++|+..... ..+.+|+++.+. .+.+.... . ..+..+.|+|+++. |+.
T Consensus 106 ~~~~~l~~~~~d-------------~~v~i~d~~~~~~~~~~~~~~~~~-~-----------~~i~~~~~~~~~~~-l~~ 159 (372)
T 1k8k_C 106 PNEKKFAVGSGS-------------RVISICYFEQENDWWVCKHIKKPI-R-----------STVLSLDWHPNSVL-LAA 159 (372)
T ss_dssp TTSSEEEEEETT-------------SSEEEEEEETTTTEEEEEEECTTC-C-----------SCEEEEEECTTSSE-EEE
T ss_pred CCCCEEEEEeCC-------------CEEEEEEecCCCcceeeeeeeccc-C-----------CCeeEEEEcCCCCE-EEE
Confidence 999999876644 368888887554 22221111 0 12457899999985 543
Q ss_pred EEeccCCCCccccCccceeeeecCCC---------------CCCCCc-eEEeecccccccceecCCCceEEEEeeccccc
Q 005240 260 VEAQDRGDANVEVSPRDIIYTQPAEP---------------AEGEKP-EILHKLDLRFRSVSWCDDSLALVNETWYKTSQ 323 (706)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~l~~~d~~~---------------~~~~~~-~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~ 323 (706)
.. .+ +.|+++|+.. ...++. ..+......+..+.|+||+..|+..+. .
T Consensus 160 ~~-~d-----------g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d 223 (372)
T 1k8k_C 160 GS-CD-----------FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSH----D 223 (372)
T ss_dssp EE-TT-----------SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEET----T
T ss_pred Ec-CC-----------CCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeC----C
Confidence 31 11 2366777410 012222 223345667889999999998887652 2
Q ss_pred eEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEe
Q 005240 324 TRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAK 370 (706)
Q Consensus 324 ~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 370 (706)
..|.++|+.++ +....+..... ....+.|+|+|++++..
T Consensus 224 ~~i~i~d~~~~--~~~~~~~~~~~------~v~~~~~~~~~~~l~~~ 262 (372)
T 1k8k_C 224 STVCLADADKK--MAVATLASETL------PLLAVTFITESSLVAAG 262 (372)
T ss_dssp TEEEEEEGGGT--TEEEEEECSSC------CEEEEEEEETTEEEEEE
T ss_pred CEEEEEECCCC--ceeEEEccCCC------CeEEEEEecCCCEEEEE
Confidence 34777777663 23322222111 12247789999877655
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.44 E-value=6.3e-12 Score=131.78 Aligned_cols=198 Identities=11% Similarity=0.063 Sum_probs=127.4
Q ss_pred ccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCC
Q 005240 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDP 112 (706)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~ 112 (706)
+..++|||||++||.++. +....|.++|+++++......... .+.+++|||||++|+..+.
T Consensus 136 ~~~v~fSpDg~~la~as~--------~~d~~i~iwd~~~~~~~~~~~~~~-----~V~~v~fspdg~~l~s~s~------ 196 (365)
T 4h5i_A 136 TKLVYISREGTVAAIASS--------KVPAIMRIIDPSDLTEKFEIETRG-----EVKDLHFSTDGKVVAYITG------ 196 (365)
T ss_dssp EEEEEECTTSSCEEEEES--------CSSCEEEEEETTTTEEEEEEECSS-----CCCEEEECTTSSEEEEECS------
T ss_pred EEEEEEcCCCCEEEEEEC--------CCCCEEEEeECCCCcEEEEeCCCC-----ceEEEEEccCCceEEeccc------
Confidence 456899999999988653 334678889999887665543333 2789999999999887642
Q ss_pred CCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCC-cee-cCCC--ceEeeeeeCCCCc
Q 005240 113 PKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKD-FGTP--AVYTAVEPSPDQK 187 (706)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~-~~~-lt~~--~~~~~~~~SpDG~ 187 (706)
..+.+++. +++ ... .... ..+..++|||||+
T Consensus 197 --------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~ 232 (365)
T 4h5i_A 197 --------------------------------------------SSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDT 232 (365)
T ss_dssp --------------------------------------------SCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTE
T ss_pred --------------------------------------------eeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCC
Confidence 23344444 552 222 2222 5678999999999
Q ss_pred EEEEEeeccCcccccccccccceEEEEecCCCeeEEcc--cCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccC
Q 005240 188 YVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELC--DLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDR 265 (706)
Q Consensus 188 ~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~--~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~ 265 (706)
.++..+..... ...+++|++.......+. ...... ..+..++|||||+. |+... .+
T Consensus 233 ~l~~~s~d~~~---------~~~i~~~~~~~~~~~~~~~~~~~~~~----------~~V~~~~~Spdg~~-lasgs-~D- 290 (365)
T 4h5i_A 233 VLIAASLKKGK---------GIVLTKISIKSGNTSVLRSKQVTNRF----------KGITSMDVDMKGEL-AVLAS-ND- 290 (365)
T ss_dssp EEEEEEESSSC---------CEEEEEEEEETTEEEEEEEEEEESSC----------SCEEEEEECTTSCE-EEEEE-TT-
T ss_pred EEEEEecCCcc---------eeEEeecccccceecceeeeeecCCC----------CCeEeEEECCCCCc-eEEEc-CC-
Confidence 99877655321 235777887654432211 111100 22457899999986 55332 11
Q ss_pred CCCccccCccceeeeecCCCCCCCCce-EE-eecccccccceecCCCceEEEEeeccccceEEEEEc
Q 005240 266 GDANVEVSPRDIIYTQPAEPAEGEKPE-IL-HKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVC 330 (706)
Q Consensus 266 ~~~~~~~~~~~~l~~~d~~~~~~~~~~-~l-~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d 330 (706)
..|.+||+ .++++. .+ ..+...+..++|||||+.|+..+.+ +..+||.++
T Consensus 291 ----------~~V~iwd~---~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D--~tvrvw~ip 342 (365)
T 4h5i_A 291 ----------NSIALVKL---KDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAA--NTIHIIKLP 342 (365)
T ss_dssp ----------SCEEEEET---TTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETT--SEEEEEECC
T ss_pred ----------CEEEEEEC---CCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCC--CeEEEEEcC
Confidence 24888998 555543 33 3457789999999999999987632 455666664
|
| >3mve_A FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/respiration switch protein, hydrolase ACTI lyase; 2.20A {Vibrio vulnificus} PDB: 3our_A | Back alignment and structure |
|---|
Probab=99.44 E-value=4.2e-13 Score=142.76 Aligned_cols=188 Identities=13% Similarity=0.062 Sum_probs=128.5
Q ss_pred CceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEE
Q 005240 480 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 559 (706)
Q Consensus 480 ~~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~ 559 (706)
...+.+.++. +|..++++++.|++ .++.|+||++||.+.. .......+...|+++||.|+
T Consensus 166 ~~~~~v~i~~-~g~~l~~~~~~P~~-----~~~~P~vv~~hG~~~~--------------~~~~~~~~~~~l~~~G~~V~ 225 (415)
T 3mve_A 166 YIIKQLEIPF-EKGKITAHLHLTNT-----DKPHPVVIVSAGLDSL--------------QTDMWRLFRDHLAKHDIAML 225 (415)
T ss_dssp SEEEEEEEEC-SSSEEEEEEEESCS-----SSCEEEEEEECCTTSC--------------GGGGHHHHHHTTGGGTCEEE
T ss_pred CCeEEEEEEE-CCEEEEEEEEecCC-----CCCCCEEEEECCCCcc--------------HHHHHHHHHHHHHhCCCEEE
Confidence 4577888887 78899999999976 2358999999996311 00011123456778999999
Q ss_pred EcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCCC
Q 005240 560 AGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNK 639 (706)
Q Consensus 560 ~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d~ 639 (706)
..+.+| +|.+.... ...........+++++.+...+|+++|+|+|+|+||++++.++..+|++++++|+.+|..+.
T Consensus 226 ~~D~~G---~G~s~~~~-~~~~~~~~~~~v~~~l~~~~~vd~~~i~l~G~S~GG~~a~~~a~~~~~~v~~~v~~~~~~~~ 301 (415)
T 3mve_A 226 TVDMPS---VGYSSKYP-LTEDYSRLHQAVLNELFSIPYVDHHRVGLIGFRFGGNAMVRLSFLEQEKIKACVILGAPIHD 301 (415)
T ss_dssp EECCTT---SGGGTTSC-CCSCTTHHHHHHHHHGGGCTTEEEEEEEEEEETHHHHHHHHHHHHTTTTCCEEEEESCCCSH
T ss_pred EECCCC---CCCCCCCC-CCCCHHHHHHHHHHHHHhCcCCCCCcEEEEEECHHHHHHHHHHHhCCcceeEEEEECCcccc
Confidence 977764 33332110 00001112246778888877789999999999999999999999999999999999987531
Q ss_pred CC----------------------------------------------------CCcc--------chHHHHHHHHHhCC
Q 005240 640 TL----------------------------------------------------TPFG--------FQAERFFDALKGHG 659 (706)
Q Consensus 640 ~~----------------------------------------------------~~~~--------~~~~~~~~~l~~~~ 659 (706)
.. .|.. .-+.+..+.+....
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~PvLii~G~~D~~vp~~~~~~l~~~~ 381 (415)
T 3mve_A 302 IFASPQKLQQMPKMYLDVLASRLGKSVVDIYSLSGQMAAWSLKVQGFLSSRKTKVPILAMSLEGDPVSPYSDNQMVAFFS 381 (415)
T ss_dssp HHHCHHHHTTSCHHHHHHHHHHTTCSSBCHHHHHHHGGGGCTTTTTTTTSSCBSSCEEEEEETTCSSSCHHHHHHHHHTB
T ss_pred ccccHHHHHHhHHHHHHHHHHHhCCCccCHHHHHHHHhhcCcccccccccCCCCCCEEEEEeCCCCCCCHHHHHHHHHhC
Confidence 00 0000 00014455666677
Q ss_pred CcEEEEEeCC-CCccCCCcccHHHHHHHHHHHHHHHhc
Q 005240 660 ALSRLVLLPF-EHHVYAARENVMHVIWETDRWLQKYCL 696 (706)
Q Consensus 660 ~~~~~~~~~~-~~H~~~~~~~~~~~~~~~~~f~~~~l~ 696 (706)
.+.++++||+ ..|. ...+....+.+||+++|.
T Consensus 382 ~~~~l~~i~g~~~h~-----~~~~~~~~i~~fL~~~L~ 414 (415)
T 3mve_A 382 TYGKAKKISSKTITQ-----GYEQSLDLAIKWLEDELL 414 (415)
T ss_dssp TTCEEEEECCCSHHH-----HHHHHHHHHHHHHHHHHT
T ss_pred CCceEEEecCCCccc-----chHHHHHHHHHHHHHHhc
Confidence 8899999998 3332 456788999999999884
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=1.5e-10 Score=141.55 Aligned_cols=256 Identities=13% Similarity=0.059 Sum_probs=152.2
Q ss_pred cceeEeecCCCCCCCCeee-eecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCc
Q 005240 5 TGIGIHRLLPDDSLGPEKE-VHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~-i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~ 83 (706)
..|.|+++.. ++... ++. ....+..++|||||++||.... ...|.++|+.+++..........
T Consensus 637 ~~i~vw~~~~----~~~~~~~~~--h~~~v~~~~~s~~~~~l~s~~~----------d~~v~vwd~~~~~~~~~~~~~~~ 700 (1249)
T 3sfz_A 637 KTLQVFKAET----GEKLLDIKA--HEDEVLCCAFSSDDSYIATCSA----------DKKVKIWDSATGKLVHTYDEHSE 700 (1249)
T ss_dssp SCEEEEETTT----CCEEEEECC--CSSCEEEEEECTTSSEEEEEET----------TSEEEEEETTTCCEEEEEECCSS
T ss_pred CeEEEEECCC----CCEEEEecc--CCCCEEEEEEecCCCEEEEEeC----------CCeEEEEECCCCceEEEEcCCCC
Confidence 3578888866 54332 332 2235889999999999988642 35788889988876554322221
Q ss_pred cccccccceEEecCCc--EEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEE
Q 005240 84 CLNAVFGSFVWVNNST--LLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (706)
Q Consensus 84 ~~~~~~~~~~wSpDg~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~ 161 (706)
.+..+.|+|+++ .|+..+. .+.|.+
T Consensus 701 ----~v~~~~~~~~~~~~~l~sg~~-------------------------------------------------d~~v~v 727 (1249)
T 3sfz_A 701 ----QVNCCHFTNKSNHLLLATGSN-------------------------------------------------DFFLKL 727 (1249)
T ss_dssp ----CEEEEEECSSSSCCEEEEEET-------------------------------------------------TSCEEE
T ss_pred ----cEEEEEEecCCCceEEEEEeC-------------------------------------------------CCeEEE
Confidence 377889999654 4443321 156788
Q ss_pred Ecc-CCCc-eecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeE-EcccCCCCCCCCccc
Q 005240 162 GSL-DGTA-KDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR-ELCDLPPAEDIPVCY 237 (706)
Q Consensus 162 ~~l-~g~~-~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~~~~~p~~~ 237 (706)
+++ +++. ..+... ..+..++|+|||+.|+..+.. ..|.+|++.++... .+.............
T Consensus 728 wd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~d-------------g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 794 (1249)
T 3sfz_A 728 WDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSAD-------------GTLRLWDVRSANERKSINVKRFFLSSEDPP 794 (1249)
T ss_dssp EETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESS-------------SEEEEEEGGGTEEEEEEECCCCC-------
T ss_pred EECCCcchhheecCCCCCEEEEEEecCCCEEEEEECC-------------CeEEEEeCCCCcccceecccccccccCCcc
Confidence 888 5543 344444 678899999999998866544 37999999855433 322211100000000
Q ss_pred CccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCce-EEe-ecccccccceecCCCceEEE
Q 005240 238 NSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPE-ILH-KLDLRFRSVSWCDDSLALVN 315 (706)
Q Consensus 238 ~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~-~l~-~~~~~~~~~~wspDg~~l~~ 315 (706)
.........++|+|||+. ++... .+.++++|. .++... .+. .....+..+.|+|++..++.
T Consensus 795 ~~~~~~v~~~~~s~dg~~-l~~~~-------------~~~v~~~d~---~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~ 857 (1249)
T 3sfz_A 795 EDVEVIVKCCSWSADGDK-IIVAA-------------KNKVLLFDI---HTSGLLAEIHTGHHSTIQYCDFSPYDHLAVI 857 (1249)
T ss_dssp -CCCCCBCCCCBCTTSSE-EEEEE-------------TTEEEEEET---TTCCEEEEEECSSSSCCCEEEECSSTTEEEE
T ss_pred ccccceEEEEEECCCCCE-EEEEc-------------CCcEEEEEe---cCCCceeEEcCCCCCceEEEEEcCCCCEEEE
Confidence 000112447899999997 55432 124778887 444433 333 44677889999999998887
Q ss_pred EeeccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEee
Q 005240 316 ETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 316 ~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 371 (706)
.... + .|.++|+.++ ............ ...+.|+|||++++...
T Consensus 858 ~~~d--g--~v~vwd~~~~--~~~~~~~~h~~~------v~~v~~spdg~~l~s~s 901 (1249)
T 3sfz_A 858 ALSQ--Y--CVELWNIDSR--LKVADCRGHLSW------VHGVMFSPDGSSFLTAS 901 (1249)
T ss_dssp ECSS--S--CEEEEETTTT--EEEEEECCCSSC------EEEEEECTTSSEEEEEE
T ss_pred EeCC--C--eEEEEEcCCC--ceeeecCCCccc------eEEEEECCCCCEEEEEe
Confidence 6522 2 3566666663 222222221111 22366788888776654
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.3e-10 Score=121.18 Aligned_cols=252 Identities=8% Similarity=-0.011 Sum_probs=157.5
Q ss_pred ceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccc
Q 005240 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (706)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 85 (706)
.|.|+++.. ++...... .....+..+.|+|||++|+.... ...|.++|+.+++..........
T Consensus 55 ~i~vwd~~~----~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~~-- 117 (369)
T 3zwl_B 55 SASVWYSLN----GERLGTLD-GHTGTIWSIDVDCFTKYCVTGSA----------DYSIKLWDVSNGQCVATWKSPVP-- 117 (369)
T ss_dssp CEEEEETTT----CCEEEEEC-CCSSCEEEEEECTTSSEEEEEET----------TTEEEEEETTTCCEEEEEECSSC--
T ss_pred EEEEEeCCC----chhhhhhh-hcCCcEEEEEEcCCCCEEEEEeC----------CCeEEEEECCCCcEEEEeecCCC--
Confidence 588888866 55443321 12335889999999999987642 35788889988877665443332
Q ss_pred cccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-
Q 005240 86 NAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL- 164 (706)
Q Consensus 86 ~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l- 164 (706)
+..+.|+|+|+.|+........ ..+.|.++++
T Consensus 118 ---v~~~~~~~~~~~l~~~~~~~~~--------------------------------------------~~g~i~~~d~~ 150 (369)
T 3zwl_B 118 ---VKRVEFSPCGNYFLAILDNVMK--------------------------------------------NPGSINIYEIE 150 (369)
T ss_dssp ---EEEEEECTTSSEEEEEECCBTT--------------------------------------------BCCEEEEEEEE
T ss_pred ---eEEEEEccCCCEEEEecCCccC--------------------------------------------CCCEEEEEEec
Confidence 7789999999998876532000 1145555555
Q ss_pred CC-C-----------ceecCCC---ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCC-CeeE-EcccC
Q 005240 165 DG-T-----------AKDFGTP---AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG-KLVR-ELCDL 227 (706)
Q Consensus 165 ~g-~-----------~~~lt~~---~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~-~l~~~ 227 (706)
.+ . ...+... ..+..++|+|||+.|+..... ..|.+|++.. .... .+...
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-------------g~i~i~d~~~~~~~~~~~~~~ 217 (369)
T 3zwl_B 151 RDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKD-------------GKISKYDVSNNYEYVDSIDLH 217 (369)
T ss_dssp ECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETT-------------SEEEEEETTTTTEEEEEEECC
T ss_pred CCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCC-------------CEEEEEECCCCcEeEEEEecC
Confidence 22 1 1111111 277899999999999876543 3799999986 4333 33222
Q ss_pred CCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceec
Q 005240 228 PPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWC 307 (706)
Q Consensus 228 ~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~ws 307 (706)
. ..+..+.|+||++. |+... . .+.|.++|+ .+++..........+..+.|+
T Consensus 218 ~-------------~~v~~~~~~~~~~~-l~~~~-~-----------d~~i~v~d~---~~~~~~~~~~~~~~~~~~~~~ 268 (369)
T 3zwl_B 218 E-------------KSISDMQFSPDLTY-FITSS-R-----------DTNSFLVDV---STLQVLKKYETDCPLNTAVIT 268 (369)
T ss_dssp S-------------SCEEEEEECTTSSE-EEEEE-T-----------TSEEEEEET---TTCCEEEEEECSSCEEEEEEC
T ss_pred C-------------CceeEEEECCCCCE-EEEec-C-----------CceEEEEEC---CCCceeeeecCCCCceeEEec
Confidence 1 12447899999986 54332 1 125888988 566665555567778899999
Q ss_pred CCCceEEEEeeccc----------cceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEee
Q 005240 308 DDSLALVNETWYKT----------SQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 308 pDg~~l~~~~~~~~----------~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 371 (706)
|+++.+++...... +...+.++|+.++ +.......... ....+.|+|||++|+...
T Consensus 269 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~--~~~~~~~~~~~------~v~~~~~s~~~~~l~s~~ 334 (369)
T 3zwl_B 269 PLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFE--EEIGRVQGHFG------PLNTVAISPQGTSYASGG 334 (369)
T ss_dssp SSSSEEEEEECCC-------------CEEEEEETTTC--CEEEEEECCSS------CEEEEEECTTSSEEEEEE
T ss_pred CCCceEEEeecCCCceEEEEecCCCcceeEEEecCCC--cchhheecccC------cEEEEEECCCCCEEEEEc
Confidence 99999988753321 1125667777663 22222221111 122477999999887664
|
| >3bdi_A Uncharacterized protein TA0194; NP_393672.1, predicted CIB-like hydrolase, structural genomi center for structural genomics; HET: MSE; 1.45A {Thermoplasma acidophilum dsm 1728} | Back alignment and structure |
|---|
Probab=99.43 E-value=1e-11 Score=118.37 Aligned_cols=181 Identities=12% Similarity=0.009 Sum_probs=115.7
Q ss_pred eEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCch--HHHHHHHCCeEEE
Q 005240 482 KEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPT--SSLIFLARRFAVL 559 (706)
Q Consensus 482 ~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~G~~v~ 559 (706)
.+...+. .+|..+++++|.|.+ +.|+||++||.+.. ...+ .. ....|+++||.|+
T Consensus 4 ~~~~~~~-~~g~~l~~~~~~~~~-------~~~~vv~~hG~~~~-----------~~~~----~~~~~~~~l~~~G~~v~ 60 (207)
T 3bdi_A 4 LQEEFID-VNGTRVFQRKMVTDS-------NRRSIALFHGYSFT-----------SMDW----DKADLFNNYSKIGYNVY 60 (207)
T ss_dssp CEEEEEE-ETTEEEEEEEECCTT-------CCEEEEEECCTTCC-----------GGGG----GGGTHHHHHHTTTEEEE
T ss_pred ceeEEEe-eCCcEEEEEEEeccC-------CCCeEEEECCCCCC-----------cccc----chHHHHHHHHhCCCeEE
Confidence 3444444 389999999999875 25899999997421 0111 23 5678889999999
Q ss_pred EcCCCCcCCCCCC---CCch-hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccC
Q 005240 560 AGPSIPIIGEGDK---LPND-RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSG 635 (706)
Q Consensus 560 ~~~~~~~~g~g~~---~~~~-~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~ 635 (706)
..+.+ |+|.+ .... .+ ..+.++...+..++++ ++.++++++|+|+||.+++.++.+.|++++++++.+|
T Consensus 61 ~~d~~---g~g~s~~~~~~~~~~--~~~~~~~~~~~~~~~~--~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~ 133 (207)
T 3bdi_A 61 APDYP---GFGRSASSEKYGIDR--GDLKHAAEFIRDYLKA--NGVARSVIMGASMGGGMVIMTTLQYPDIVDGIIAVAP 133 (207)
T ss_dssp EECCT---TSTTSCCCTTTCCTT--CCHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESC
T ss_pred EEcCC---cccccCcccCCCCCc--chHHHHHHHHHHHHHH--cCCCceEEEEECccHHHHHHHHHhCchhheEEEEeCC
Confidence 97765 34444 2111 11 0123333344444443 2457999999999999999999999999999999998
Q ss_pred CCCCC--------CCCcc--------chHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 005240 636 SYNKT--------LTPFG--------FQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQK 693 (706)
Q Consensus 636 ~~d~~--------~~~~~--------~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~~~ 693 (706)
..... ..|.. .-..+..+.+.+.-.+++++++|+++|.+.. ....++.+.+.+||++
T Consensus 134 ~~~~~~~~~~~~~~~p~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~-~~~~~~~~~i~~fl~~ 206 (207)
T 3bdi_A 134 AWVESLKGDMKKIRQKTLLVWGSKDHVVPIALSKEYASIISGSRLEIVEGSGHPVYI-EKPEEFVRITVDFLRN 206 (207)
T ss_dssp CSCGGGHHHHTTCCSCEEEEEETTCTTTTHHHHHHHHHHSTTCEEEEETTCCSCHHH-HSHHHHHHHHHHHHHT
T ss_pred ccccchhHHHhhccCCEEEEEECCCCccchHHHHHHHHhcCCceEEEeCCCCCCccc-cCHHHHHHHHHHHHhh
Confidence 63321 11211 0111333333333346799999999998652 2355677778888764
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.1e-10 Score=125.54 Aligned_cols=158 Identities=8% Similarity=0.126 Sum_probs=86.6
Q ss_pred ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecC-CCeeEEcccCCCCCCCCcccCccCCCCcceeeecCC
Q 005240 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD-GKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADK 253 (706)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg 253 (706)
..+..++|+|||+.|+.. .+ ..|.+|++. ++....+...... ........+..+.|+|++
T Consensus 178 ~~v~~~~~~~~~~~l~s~-~d-------------~~i~iwd~~~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~~p~~ 238 (447)
T 3dw8_B 178 YHINSISINSDYETYLSA-DD-------------LRINLWHLEITDRSFNIVDIKPA-----NMEELTEVITAAEFHPNS 238 (447)
T ss_dssp SCCCEEEECTTSSEEEEE-CS-------------SEEEEEETTEEEEEEEEEECCCS-----SGGGCCCCEEEEEECSSC
T ss_pred cceEEEEEcCCCCEEEEe-CC-------------CeEEEEECCCCCceeeeeecccc-----cccccCcceEEEEECCCC
Confidence 567899999999998754 22 379999998 3333322111000 000001224588999999
Q ss_pred CceEEEEEeccCCCCccccCccceeeeecCCCCCCCCc-----eEEeeccc------------ccccceecCCCceEEEE
Q 005240 254 PSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP-----EILHKLDL------------RFRSVSWCDDSLALVNE 316 (706)
Q Consensus 254 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~-----~~l~~~~~------------~~~~~~wspDg~~l~~~ 316 (706)
...|+.. ..+ +.|.+||+ ..++. ..+..... .+..+.|+|||+.|+..
T Consensus 239 ~~~l~s~-~~d-----------g~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~ 303 (447)
T 3dw8_B 239 CNTFVYS-SSK-----------GTIRLCDM---RASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTR 303 (447)
T ss_dssp TTEEEEE-ETT-----------SCEEEEET---TTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEE
T ss_pred CcEEEEE-eCC-----------CeEEEEEC---cCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEe
Confidence 4424433 221 24778888 44443 44443333 78899999999998875
Q ss_pred eeccccceEEEEEcCCCCCCCceeeecCc-ccc----cccCC---CCCceEeccCCCEEEEee
Q 005240 317 TWYKTSQTRTWLVCPGSKDVAPRVLFDRV-FEN----VYSDP---GSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 317 ~~~~~~~~~l~~~d~~~~~~~~~~l~~~~-~~~----~~~~~---~~~~~~~s~dg~~l~~~~ 371 (706)
+. ..|.++|+.........+.... +.. .+... ..+.+.|+|||++|+...
T Consensus 304 ~~-----~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s 361 (447)
T 3dw8_B 304 DY-----LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGS 361 (447)
T ss_dssp ES-----SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEEC
T ss_pred eC-----CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEec
Confidence 42 3466677665211222221111 000 00000 123478999999986554
|
| >4ezi_A Uncharacterized protein; alpha-beta hydrolases fold, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.15A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.42 E-value=3.4e-12 Score=132.93 Aligned_cols=149 Identities=11% Similarity=0.093 Sum_probs=94.0
Q ss_pred CCceEEEEEEccC--C--eEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHH-H
Q 005240 479 SLQKEMIKYQRKD--G--VPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFL-A 553 (706)
Q Consensus 479 ~~~~~~~~~~~~d--g--~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~ 553 (706)
.++...+.|.+.| | ..+.++++.|.+. .++.|+|++.||... . ..+.+.......+..+..|+ +
T Consensus 40 ~~~~~~i~Y~s~d~~G~~~~~~g~l~~P~~~----~~~~PvV~~~HG~~~-~------~~~~ps~~~~~~~~~~~~lal~ 108 (377)
T 4ezi_A 40 DLQLYKINYKTQSPDGNLTIASGLVAMPIHP----VGQVGIISYQHGTRF-E------RNDVPSRNNEKNYIYLAAYGNS 108 (377)
T ss_dssp CEEEEEEEEEEECTTSCEEEEEEEEEEESSC----SSCEEEEEEECCCCC-S------TTCSGGGCCGGGHHHHHHHTTT
T ss_pred CcEEEEEEEEEECCCCCEEEEEEEEEECCCC----CCCCcEEEEeCCCcC-C------cccCCCcCcccchHHHHHHHHh
Confidence 3466777787765 4 5688999999863 246899999999752 1 11111110001123456788 9
Q ss_pred CCeEEEEcCCCCcCCCCC---CCCchhhHHHHHHHHHHHHHHHHH-cCCCCCCcEEEEEechHHHHHHHHHHhCC----C
Q 005240 554 RRFAVLAGPSIPIIGEGD---KLPNDRFVEQLVSSAEAAVEEVVR-RGVADPSRIAVGGHSYGAFMTAHLLAHAP----H 625 (706)
Q Consensus 554 ~G~~v~~~~~~~~~g~g~---~~~~~~~~~~~~~D~~~~~~~l~~-~~~id~~~i~i~G~S~GG~~a~~~~~~~p----~ 625 (706)
+||+|+.++++|..+.+. .+.........+.|...++..+.+ .+..++.||+++|+|+||+++++++...| +
T Consensus 109 ~Gy~Vv~~D~rG~G~s~~~~~~~~~~~~~~~~~~D~~~a~~~~~~~~g~~~~~~v~l~G~S~GG~~al~~A~~~p~~~~~ 188 (377)
T 4ezi_A 109 AGYMTVMPDYLGLGDNELTLHPYVQAETLASSSIDMLFAAKELANRLHYPISDKLYLAGYSEGGFSTIVMFEMLAKEYPD 188 (377)
T ss_dssp TCCEEEEECCTTSTTCCCSSCCTTCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEETHHHHHHHHHHHHHHHHCTT
T ss_pred CCcEEEEeCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHHHhhccCCCCCCceEEEEECHHHHHHHHHHHHhhhhCCC
Confidence 999999988875533221 111111112233444444444433 35456789999999999999999987753 3
Q ss_pred -ceeEEEeccCCCC
Q 005240 626 -LFCCGIARSGSYN 638 (706)
Q Consensus 626 -~~~a~v~~~~~~d 638 (706)
.++++++.++.+|
T Consensus 189 l~l~g~~~~~~p~d 202 (377)
T 4ezi_A 189 LPVSAVAPGSAPYG 202 (377)
T ss_dssp SCCCEEEEESCCCC
T ss_pred CceEEEEecCcccC
Confidence 5889998887765
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.2e-10 Score=123.67 Aligned_cols=265 Identities=10% Similarity=0.103 Sum_probs=162.1
Q ss_pred eeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhc
Q 005240 62 LRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNL 141 (706)
Q Consensus 62 ~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (706)
..|+++++++++..++..... ...+..+.|+|||++|+.....
T Consensus 113 ~~v~lw~~~~~~~~~~~~~~~---~~~v~~v~~s~~~~~l~~~~~d---------------------------------- 155 (401)
T 4aez_A 113 RNVYVWNADSGSVSALAETDE---STYVASVKWSHDGSFLSVGLGN---------------------------------- 155 (401)
T ss_dssp TEEEEEETTTCCEEEEEECCT---TCCEEEEEECTTSSEEEEEETT----------------------------------
T ss_pred CeEEEeeCCCCcEeEeeecCC---CCCEEEEEECCCCCEEEEECCC----------------------------------
Confidence 578999999988776654321 1137789999999998876421
Q ss_pred cCCchhhhhhhhcccceEEEEcc-CC-CceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecC-
Q 005240 142 LKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD- 217 (706)
Q Consensus 142 ~~~~~d~~~~~~~~~~~l~~~~l-~g-~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~- 217 (706)
+.|.++++ ++ ..+.+... ..+..++| +++.|+..+.. ..|.+|++.
T Consensus 156 ---------------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d-------------g~i~i~d~~~ 205 (401)
T 4aez_A 156 ---------------GLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRS-------------GAIHHHDVRI 205 (401)
T ss_dssp ---------------SCEEEEETTTCCEEEEECCCSSCEEEEEE--ETTEEEEEETT-------------SEEEEEETTS
T ss_pred ---------------CeEEEEECcCCeEEEEecCCCCceEEEEE--CCCEEEEEcCC-------------CCEEEEeccc
Confidence 56777788 45 34444444 67788888 55666655433 379999998
Q ss_pred CC-eeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCce-EEe
Q 005240 218 GK-LVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPE-ILH 295 (706)
Q Consensus 218 ~~-~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~-~l~ 295 (706)
.+ ....+.... ..+..+.|+||++. |+... . .+.|.+||+ ..++.. .+.
T Consensus 206 ~~~~~~~~~~~~-------------~~v~~~~~~~~~~~-l~s~~-~-----------d~~v~iwd~---~~~~~~~~~~ 256 (401)
T 4aez_A 206 ANHQIGTLQGHS-------------SEVCGLAWRSDGLQ-LASGG-N-----------DNVVQIWDA---RSSIPKFTKT 256 (401)
T ss_dssp SSCEEEEEECCS-------------SCEEEEEECTTSSE-EEEEE-T-----------TSCEEEEET---TCSSEEEEEC
T ss_pred CcceeeEEcCCC-------------CCeeEEEEcCCCCE-EEEEe-C-----------CCeEEEccC---CCCCccEEec
Confidence 33 233333222 12457899999986 54332 1 124888888 444443 344
Q ss_pred ecccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEeeeccC
Q 005240 296 KLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKEN 375 (706)
Q Consensus 296 ~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~ 375 (706)
.....+..+.|+|++..+++.... .....|.++|+.++ +.....+.. .....+.|+|+|+.++.....
T Consensus 257 ~~~~~v~~~~~~p~~~~ll~~~~g-s~d~~i~i~d~~~~--~~~~~~~~~-------~~v~~~~~s~~~~~l~~~~g~-- 324 (401)
T 4aez_A 257 NHNAAVKAVAWCPWQSNLLATGGG-TMDKQIHFWNAATG--ARVNTVDAG-------SQVTSLIWSPHSKEIMSTHGF-- 324 (401)
T ss_dssp CCSSCCCEEEECTTSTTEEEEECC-TTTCEEEEEETTTC--CEEEEEECS-------SCEEEEEECSSSSEEEEEECT--
T ss_pred CCcceEEEEEECCCCCCEEEEecC-CCCCEEEEEECCCC--CEEEEEeCC-------CcEEEEEECCCCCeEEEEeec--
Confidence 567788999999998877765421 12345888888774 333332211 012347799999998876411
Q ss_pred CcceEEEEecCCCCCCCCCCceeeeecCCCceeeeecccchhhhhhhhhhccCCCceecccCCCEEEEEEecCCCCcEEE
Q 005240 376 DEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYH 455 (706)
Q Consensus 376 ~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~p~~v~ 455 (706)
....+..+++.+++...+....+ .........|+||++.|+....+ ..|.
T Consensus 325 -----------------~dg~i~v~~~~~~~~~~~~~~~~---------h~~~v~~~~~s~dg~~l~s~~~d----g~i~ 374 (401)
T 4aez_A 325 -----------------PDNNLSIWSYSSSGLTKQVDIPA---------HDTRVLYSALSPDGRILSTAASD----ENLK 374 (401)
T ss_dssp -----------------TTCEEEEEEEETTEEEEEEEEEC---------CSSCCCEEEECTTSSEEEEECTT----SEEE
T ss_pred -----------------CCCcEEEEecCCccceeEEEecC---------CCCCEEEEEECCCCCEEEEEeCC----CcEE
Confidence 01135566666665544432211 11223357899999877765433 4699
Q ss_pred EEECCCCce
Q 005240 456 ILSWPLKKS 464 (706)
Q Consensus 456 ~~~~~~~~~ 464 (706)
+|++.+++.
T Consensus 375 iw~~~~~~~ 383 (401)
T 4aez_A 375 FWRVYDGDH 383 (401)
T ss_dssp EEECCC---
T ss_pred EEECCCCcc
Confidence 999887654
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=2e-11 Score=149.36 Aligned_cols=224 Identities=8% Similarity=-0.038 Sum_probs=135.1
Q ss_pred ceEEEEcc-CCCc-eecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCC
Q 005240 157 AQLVLGSL-DGTA-KDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDI 233 (706)
Q Consensus 157 ~~l~~~~l-~g~~-~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~ 233 (706)
+.|+++++ +++. ..+... ..+..++|||||++|+..+.. ..|.+|++.+++...+....
T Consensus 983 g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d-------------g~i~vwd~~~~~~~~~~~~~----- 1044 (1249)
T 3sfz_A 983 GAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSED-------------SVIQVWNWQTGDYVFLQAHQ----- 1044 (1249)
T ss_dssp SCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSS-------------SBEEEEETTTTEEECCBCCS-----
T ss_pred CCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCC-------------CEEEEEECCCCceEEEecCC-----
Confidence 46777787 4533 334333 678899999999999866543 37999999987665443221
Q ss_pred CcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCc-eEEeecccccccceecCCCce
Q 005240 234 PVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP-EILHKLDLRFRSVSWCDDSLA 312 (706)
Q Consensus 234 p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~-~~l~~~~~~~~~~~wspDg~~ 312 (706)
..+..+.|+|++. ++... . .+.+.+||+ .+++. ..+......+..+.|+|||+.
T Consensus 1045 --------~~v~~~~~~~~~~--l~~~~-~-----------dg~v~vwd~---~~~~~~~~~~~~~~~v~~~~~s~d~~~ 1099 (1249)
T 3sfz_A 1045 --------ETVKDFRLLQDSR--LLSWS-F-----------DGTVKVWNV---ITGRIERDFTCHQGTVLSCAISSDATK 1099 (1249)
T ss_dssp --------SCEEEEEECSSSE--EEEEE-S-----------SSEEEEEET---TTTCCCEEEECCSSCCCCEEECSSSSS
T ss_pred --------CcEEEEEEcCCCc--EEEEE-C-----------CCcEEEEEC---CCCceeEEEcccCCcEEEEEECCCCCE
Confidence 2244778999875 33221 1 225888888 45544 456667788999999999999
Q ss_pred EEEEeeccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCC
Q 005240 313 LVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEG 392 (706)
Q Consensus 313 l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~ 392 (706)
|+..+.+ + .|.++|+.+++ +......... ....+.|||||++|+..... |
T Consensus 1100 l~s~s~d--~--~v~iwd~~~~~--~~~~l~~h~~------~v~~~~~s~dg~~lat~~~d-------------g----- 1149 (1249)
T 3sfz_A 1100 FSSTSAD--K--TAKIWSFDLLS--PLHELKGHNG------CVRCSAFSLDGILLATGDDN-------------G----- 1149 (1249)
T ss_dssp CEEECCS--S--CCCEECSSSSS--CSBCCCCCSS------CEEEEEECSSSSEEEEEETT-------------S-----
T ss_pred EEEEcCC--C--cEEEEECCCcc--eeeeeccCCC------cEEEEEECCCCCEEEEEeCC-------------C-----
Confidence 8876532 2 35566766632 2222111111 12247799999988876421 1
Q ss_pred CCCceeeeecCCCceeeeecccchhhhhhhhhhccCCCceecccCCCEEEEEEecCCCCcEEEEEECCCCce
Q 005240 393 NIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKS 464 (706)
Q Consensus 393 ~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~p~~v~~~~~~~~~~ 464 (706)
.+..+|+.+|+......... ................|||||+.++... ..+.+||+.+++.
T Consensus 1150 ---~i~vwd~~~~~~~~~~~~~~--~~~~~~~~~~~v~~l~fs~dg~~l~s~~------g~v~vwd~~~g~~ 1210 (1249)
T 3sfz_A 1150 ---EIRIWNVSDGQLLHSCAPIS--VEEGTATHGGWVTDVCFSPDSKTLVSAG------GYLKWWNVATGDS 1210 (1249)
T ss_dssp ---CCCEEESSSSCCCCCCCCCC---------CCSCCCEEEECTTSSCEEEES------SSEEEBCSSSCBC
T ss_pred ---EEEEEECCCCceEEEecccc--ccccccccCceEEEEEECCCCCEEEECC------CeEEEEECCCCce
Confidence 25556776665433221100 0001111122334689999999887542 4699999888764
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.42 E-value=9.2e-11 Score=126.70 Aligned_cols=230 Identities=8% Similarity=-0.026 Sum_probs=127.5
Q ss_pred ceEEEEccC---CC-ceecCC---CceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEE-----c
Q 005240 157 AQLVLGSLD---GT-AKDFGT---PAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRE-----L 224 (706)
Q Consensus 157 ~~l~~~~l~---g~-~~~lt~---~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-----l 224 (706)
+.|.++++. ++ .+.+.. ...+..++|+|||++|+..... ..+++|++....... +
T Consensus 125 g~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~-------------g~v~~~~~~~~~~~~~~~~~~ 191 (450)
T 2vdu_B 125 KSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKF-------------GDVYSIDINSIPEEKFTQEPI 191 (450)
T ss_dssp TEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETT-------------SEEEEEETTSCCCSSCCCCCS
T ss_pred CeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCC-------------CcEEEEecCCcccccccceee
Confidence 345555553 33 333431 2567899999999999876543 378999987554321 1
Q ss_pred ccCCCCCCCCcccCccCCCCcceeeecC---CCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCce-E-Eeeccc
Q 005240 225 CDLPPAEDIPVCYNSVREGMRSISWRAD---KPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPE-I-LHKLDL 299 (706)
Q Consensus 225 ~~~~~~~~~p~~~~~~~~g~~~~~~spd---g~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~-~-l~~~~~ 299 (706)
.... ..+..+.|+|| ++. |+.. ..+ ..|++||+ .+++.. . +.....
T Consensus 192 ~~h~-------------~~v~~~~~sp~~~~~~~-l~s~-~~d-----------~~i~vwd~---~~~~~~~~~~~~h~~ 242 (450)
T 2vdu_B 192 LGHV-------------SMLTDVHLIKDSDGHQF-IITS-DRD-----------EHIKISHY---PQCFIVDKWLFGHKH 242 (450)
T ss_dssp EECS-------------SCEEEEEEEECTTSCEE-EEEE-ETT-----------SCEEEEEE---SCTTCEEEECCCCSS
T ss_pred eccc-------------CceEEEEEcCCCCCCcE-EEEE-cCC-----------CcEEEEEC---CCCceeeeeecCCCC
Confidence 1111 22457899999 664 4422 211 24788888 444433 3 335667
Q ss_pred ccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCc--ccccc-----------------cCCCCCceEe
Q 005240 300 RFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRV--FENVY-----------------SDPGSPMMTR 360 (706)
Q Consensus 300 ~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~--~~~~~-----------------~~~~~~~~~~ 360 (706)
.+..+.|+ |++.|+..+. ...|.++|+.+++ ....+... +.... .......+.|
T Consensus 243 ~v~~~~~s-d~~~l~s~~~----d~~v~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~ 315 (450)
T 2vdu_B 243 FVSSICCG-KDYLLLSAGG----DDKIFAWDWKTGK--NLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIK 315 (450)
T ss_dssp CEEEEEEC-STTEEEEEES----SSEEEEEETTTCC--EEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEE
T ss_pred ceEEEEEC-CCCEEEEEeC----CCeEEEEECCCCc--EeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEE
Confidence 88899999 9998887652 2357778887743 22222110 00000 0001224678
Q ss_pred ccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeec--CCC-ceeeeecccchhhhhhhhhhccCCCceecccC
Q 005240 361 TSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDI--NTG-SKERIWESNREKYFETAVALVFGQGEEDINLN 437 (706)
Q Consensus 361 s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~--~~g-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~D 437 (706)
+|+|++|++.... ...|..+++ .++ +.+.+-..... .....+.|+|+
T Consensus 316 ~~~~~~l~~~~~~--------------------d~~i~iw~~~~~~~~~l~~~~~~~~~----------~~v~~~~~~~~ 365 (450)
T 2vdu_B 316 SKNLPFVAFFVEA--------------------TKCIIILEMSEKQKGDLALKQIITFP----------YNVISLSAHND 365 (450)
T ss_dssp CSSSSEEEEEETT--------------------CSEEEEEEECSSSTTCEEEEEEEECS----------SCEEEEEEETT
T ss_pred eCCCCEEEEEECC--------------------CCeEEEEEeccCCCCceeeccEeccC----------CceEEEEecCC
Confidence 9999988877521 112444444 332 22222111100 11234678885
Q ss_pred CCEEEEEEecCCCCc------EEEEEECCCCceeEee
Q 005240 438 QLKILTSKESKTEIT------QYHILSWPLKKSSQIT 468 (706)
Q Consensus 438 g~~l~~~~~~~~~p~------~v~~~~~~~~~~~~lt 468 (706)
.++++..+...|. ++|.++..+++.+ ++
T Consensus 366 --~~~v~~~~~~~~~~~~~~i~v~~~~~~~~~~~-~~ 399 (450)
T 2vdu_B 366 --EFQVTLDNKESSGVQKNFAKFIEYNLNENSFV-VN 399 (450)
T ss_dssp --EEEEEECCTTCCSSCCCSEEEEEEETTTTEEE-EC
T ss_pred --cEEEEEecccCCCCCCcceEEEEEEcCCCeEE-Ec
Confidence 4555556665564 8888887777654 66
|
| >3fnb_A Acylaminoacyl peptidase SMU_737; alpha-beta-alpha sandwich, helix bundle, structural genomics protein structure initiative; HET: PGE; 2.12A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.42 E-value=3.9e-13 Score=143.09 Aligned_cols=188 Identities=16% Similarity=0.140 Sum_probs=129.7
Q ss_pred ceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEE
Q 005240 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 560 (706)
Q Consensus 481 ~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~ 560 (706)
..+.+.++. +|..++++++.|.. ++.|+||++||.+.. ...+ .......++++||.|+.
T Consensus 134 ~~~~~~i~~-~~~~l~~~~~~~~~------~~~p~vv~~HG~~~~-----------~~~~---~~~~~~~~~~~g~~vi~ 192 (405)
T 3fnb_A 134 PLKSIEVPF-EGELLPGYAIISED------KAQDTLIVVGGGDTS-----------REDL---FYMLGYSGWEHDYNVLM 192 (405)
T ss_dssp CCEEEEEEE-TTEEEEEEEECCSS------SCCCEEEEECCSSCC-----------HHHH---HHHTHHHHHHTTCEEEE
T ss_pred CcEEEEEeE-CCeEEEEEEEcCCC------CCCCEEEEECCCCCC-----------HHHH---HHHHHHHHHhCCcEEEE
Confidence 467777776 68899999984321 235899999995311 0000 01122356689999999
Q ss_pred cCCCCcCCCCCCCCc-hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCCC
Q 005240 561 GPSIPIIGEGDKLPN-DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNK 639 (706)
Q Consensus 561 ~~~~~~~g~g~~~~~-~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d~ 639 (706)
.+.+ |+|.+... ..+......|+.++++++..+. .+|+|+|+|+||++++.++.++| +++++|+.+|..+.
T Consensus 193 ~D~~---G~G~s~~~~~~~~~~~~~d~~~~~~~l~~~~----~~v~l~G~S~GG~~a~~~a~~~p-~v~~~v~~~p~~~~ 264 (405)
T 3fnb_A 193 VDLP---GQGKNPNQGLHFEVDARAAISAILDWYQAPT----EKIAIAGFSGGGYFTAQAVEKDK-RIKAWIASTPIYDV 264 (405)
T ss_dssp ECCT---TSTTGGGGTCCCCSCTHHHHHHHHHHCCCSS----SCEEEEEETTHHHHHHHHHTTCT-TCCEEEEESCCSCH
T ss_pred EcCC---CCcCCCCCCCCCCccHHHHHHHHHHHHHhcC----CCEEEEEEChhHHHHHHHHhcCc-CeEEEEEecCcCCH
Confidence 7766 34443211 1111234678889999886654 78999999999999999999998 99999999998652
Q ss_pred CC-----------CCc--------------------------------------------------------c-------
Q 005240 640 TL-----------TPF--------------------------------------------------------G------- 645 (706)
Q Consensus 640 ~~-----------~~~--------------------------------------------------------~------- 645 (706)
.. .|. .
T Consensus 265 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLii~G~~D 344 (405)
T 3fnb_A 265 AEVFRISFSTALKAPKTILKWGSKLVTSVNKVAEVNLNKYAWQFGQVDFITSVNEVLEQAQIVDYNKIDVPSLFLVGAGE 344 (405)
T ss_dssp HHHHHHHCC------------------CCCHHHHHHHHHHHHHHTSSSHHHHHHHHHHHCCCCCGGGCCSCEEEEEETTS
T ss_pred HHHHHHhhhhhhhCcHHHHHHHHHHhhccchhHHHHHHHhhhhcCCCCHHHHHHHHHHhhcccCHhhCCCCEEEEecCCC
Confidence 10 000 0
Q ss_pred -----chHHHHHHHHHhCCCcEEEEEeCCCCccC--CCcccHHHHHHHHHHHHHHHhcc
Q 005240 646 -----FQAERFFDALKGHGALSRLVLLPFEHHVY--AARENVMHVIWETDRWLQKYCLS 697 (706)
Q Consensus 646 -----~~~~~~~~~l~~~~~~~~~~~~~~~~H~~--~~~~~~~~~~~~~~~f~~~~l~~ 697 (706)
-+..+++++|...+.++++++|+++.|.. ........+.+.+.+||+++|..
T Consensus 345 ~~v~~~~~~~l~~~l~~~~~~~~l~~~~~~~h~gh~~~~~~~~~~~~~i~~fL~~~l~~ 403 (405)
T 3fnb_A 345 DSELMRQSQVLYDNFKQRGIDVTLRKFSSESGADAHCQVNNFRLMHYQVFEWLNHIFKK 403 (405)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCEEEEEECTTTTCCSGGGGGGHHHHHHHHHHHHHHHHC-
T ss_pred cCCChHHHHHHHHHhccCCCCceEEEEcCCccchhccccchHHHHHHHHHHHHHHHhCc
Confidence 01128899999989999999997776652 23456778899999999999864
|
| >2pbl_A Putative esterase/lipase/thioesterase; alpha/beta-hydrolases fold, structural genomics, joint cente structural genomics, JCSG; 1.79A {Silicibacter SP} SCOP: c.69.1.2 | Back alignment and structure |
|---|
Probab=99.42 E-value=2.4e-12 Score=128.11 Aligned_cols=125 Identities=15% Similarity=0.171 Sum_probs=92.5
Q ss_pred EEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCC
Q 005240 486 KYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIP 565 (706)
Q Consensus 486 ~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~ 565 (706)
.++-.++..+...+|.|.+ + +.|+||++|||++.. ++...+ ..++..|+++||.|+.+++++
T Consensus 42 ~i~~~~~~~~~~~~~~p~~---~---~~p~vv~~HGgg~~~--------~~~~~~----~~~~~~l~~~G~~v~~~d~~~ 103 (262)
T 2pbl_A 42 NLSYGEGDRHKFDLFLPEG---T---PVGLFVFVHGGYWMA--------FDKSSW----SHLAVGALSKGWAVAMPSYEL 103 (262)
T ss_dssp EEESSSSTTCEEEEECCSS---S---CSEEEEEECCSTTTS--------CCGGGC----GGGGHHHHHTTEEEEEECCCC
T ss_pred ccccCCCCCceEEEEccCC---C---CCCEEEEEcCccccc--------CChHHH----HHHHHHHHhCCCEEEEeCCCC
Confidence 3333355567778888875 1 369999999985321 111111 235677888999999987764
Q ss_pred cCCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhC------CCceeEEEeccCCCCC
Q 005240 566 IIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHA------PHLFCCGIARSGSYNK 639 (706)
Q Consensus 566 ~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~------p~~~~a~v~~~~~~d~ 639 (706)
. +. ........|+.++++++..+.. ++++++|||+||++++.++.+. |++++++|+.+|.++.
T Consensus 104 ~---~~-----~~~~~~~~d~~~~~~~l~~~~~---~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~v~~~vl~~~~~~~ 172 (262)
T 2pbl_A 104 C---PE-----VRISEITQQISQAVTAAAKEID---GPIVLAGHSAGGHLVARMLDPEVLPEAVGARIRNVVPISPLSDL 172 (262)
T ss_dssp T---TT-----SCHHHHHHHHHHHHHHHHHHSC---SCEEEEEETHHHHHHHHTTCTTTSCHHHHTTEEEEEEESCCCCC
T ss_pred C---CC-----CChHHHHHHHHHHHHHHHHhcc---CCEEEEEECHHHHHHHHHhccccccccccccceEEEEecCccCc
Confidence 3 22 1245678999999999988643 7999999999999999999887 8899999999998763
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.41 E-value=5.3e-11 Score=136.19 Aligned_cols=228 Identities=11% Similarity=0.042 Sum_probs=140.1
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCc------eeecccCCCccccccccceEEecCCcEEEEEe
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE------AKPLFESPDICLNAVFGSFVWVNNSTLLIFTI 105 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~------~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~ 105 (706)
.+..++|+|++..++.+... + ..|.++++..+. .+.+..+.. .+..+.|||||++|+..+
T Consensus 384 ~V~~v~~~~~~~~~l~s~s~-------D--~~i~~W~~~~~~~~~~~~~~~~~~h~~-----~v~~v~~s~~g~~l~sgs 449 (694)
T 3dm0_A 384 MVTAIATPIDNADIIVSASR-------D--KSIILWKLTKDDKAYGVAQRRLTGHSH-----FVEDVVLSSDGQFALSGS 449 (694)
T ss_dssp CEEEEECCTTCCSEEEEEET-------T--SEEEEEECCCSTTCSCEEEEEEECCSS-----CEEEEEECTTSSEEEEEE
T ss_pred eeEEEEecCCCCCEEEEEeC-------C--CcEEEEEccCCCcccccccceecCCCC-----cEEEEEECCCCCEEEEEe
Confidence 48889999987655554432 3 455555654421 123433332 277899999999988764
Q ss_pred cCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CC-CceecCCC-ceEeeeee
Q 005240 106 PSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTP-AVYTAVEP 182 (706)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g-~~~~lt~~-~~~~~~~~ 182 (706)
.+ +.|.++|+ ++ ..+.+..+ ..+..++|
T Consensus 450 ~D-------------------------------------------------g~v~vwd~~~~~~~~~~~~h~~~v~~~~~ 480 (694)
T 3dm0_A 450 WD-------------------------------------------------GELRLWDLAAGVSTRRFVGHTKDVLSVAF 480 (694)
T ss_dssp TT-------------------------------------------------SEEEEEETTTTEEEEEEECCSSCEEEEEE
T ss_pred CC-------------------------------------------------CcEEEEECCCCcceeEEeCCCCCEEEEEE
Confidence 21 57888888 55 44455444 67899999
Q ss_pred CCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEe
Q 005240 183 SPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEA 262 (706)
Q Consensus 183 SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~ 262 (706)
||||++|+..+.+ ..|.+|++.+.....+........ ..+..+.|+|++...++....
T Consensus 481 s~~~~~l~s~s~D-------------~~i~iwd~~~~~~~~~~~~~~~h~---------~~v~~~~~~~~~~~~~l~s~s 538 (694)
T 3dm0_A 481 SLDNRQIVSASRD-------------RTIKLWNTLGECKYTISEGGEGHR---------DWVSCVRFSPNTLQPTIVSAS 538 (694)
T ss_dssp CTTSSCEEEEETT-------------SCEEEECTTSCEEEEECSSTTSCS---------SCEEEEEECSCSSSCEEEEEE
T ss_pred eCCCCEEEEEeCC-------------CEEEEEECCCCcceeeccCCCCCC---------CcEEEEEEeCCCCcceEEEEe
Confidence 9999999765543 379999987665544432211110 124478999998532332321
Q ss_pred ccCCCCccccCccceeeeecCCCCCCCCce-EEeecccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceee
Q 005240 263 QDRGDANVEVSPRDIIYTQPAEPAEGEKPE-ILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVL 341 (706)
Q Consensus 263 ~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~-~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l 341 (706)
.+ ..|.+||+ .+++.. .+..+...+..+.|+|||+.|+..+.+ + .|.++|+.++ +....
T Consensus 539 ~d-----------~~v~vwd~---~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~D--g--~i~iwd~~~~--~~~~~ 598 (694)
T 3dm0_A 539 WD-----------KTVKVWNL---SNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKD--G--VVLLWDLAEG--KKLYS 598 (694)
T ss_dssp TT-----------SCEEEEET---TTCCEEEEECCCSSCEEEEEECTTSSEEEEEETT--S--BCEEEETTTT--EEEEC
T ss_pred CC-----------CeEEEEEC---CCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCC--C--eEEEEECCCC--ceEEE
Confidence 11 24788888 454443 355667788999999999988876522 2 3556676663 22111
Q ss_pred ecCcccccccCCCCCceEeccCCCEEEEee
Q 005240 342 FDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 371 (706)
.... .....+.|+|++.+++...
T Consensus 599 ~~~~-------~~v~~~~~sp~~~~l~~~~ 621 (694)
T 3dm0_A 599 LEAN-------SVIHALCFSPNRYWLCAAT 621 (694)
T ss_dssp CBCS-------SCEEEEEECSSSSEEEEEE
T ss_pred ecCC-------CcEEEEEEcCCCcEEEEEc
Confidence 1111 0122467899998877654
|
| >1vkh_A Putative serine hydrolase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.85A {Saccharomyces cerevisiae} SCOP: c.69.1.32 | Back alignment and structure |
|---|
Probab=99.41 E-value=9.8e-13 Score=131.88 Aligned_cols=158 Identities=13% Similarity=0.045 Sum_probs=111.5
Q ss_pred CceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHH----HHCCeEEEEcCCCCcCCCCCCCCchhhHHHHHHHHH
Q 005240 512 PLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIF----LARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAE 587 (706)
Q Consensus 512 ~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~D~~ 587 (706)
+.|+||++|||++..+. ..... ....+..| ++.||.|+.+++++.... .....++|+.
T Consensus 40 ~~p~vv~lHGgg~~~g~------~~~~~----~~~~~~~L~~~a~~~g~~vi~~d~r~~~~~--------~~~~~~~d~~ 101 (273)
T 1vkh_A 40 TREAVIYIHGGAWNDPE------NTPND----FNQLANTIKSMDTESTVCQYSIEYRLSPEI--------TNPRNLYDAV 101 (273)
T ss_dssp CCEEEEEECCSTTTCTT------CCGGG----GHHHHHHHHHHCTTCCEEEEEECCCCTTTS--------CTTHHHHHHH
T ss_pred CCeEEEEECCCcccCCc------CChHH----HHHHHHHHhhhhccCCcEEEEeecccCCCC--------CCCcHHHHHH
Confidence 47999999998643100 00011 12345556 479999999888643211 1124577888
Q ss_pred HHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhC-----------------CCceeEEEeccCCCCCC----------
Q 005240 588 AAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHA-----------------PHLFCCGIARSGSYNKT---------- 640 (706)
Q Consensus 588 ~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~-----------------p~~~~a~v~~~~~~d~~---------- 640 (706)
++++++.++ ++.++|+++|+|+||++++.++.+. |++++++++.+|.++..
T Consensus 102 ~~~~~l~~~--~~~~~i~l~G~S~GG~~a~~~a~~~~~~~p~~~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~~ 179 (273)
T 1vkh_A 102 SNITRLVKE--KGLTNINMVGHSVGATFIWQILAALKDPQEKMSEAQLQMLGLLQIVKRVFLLDGIYSLKELLIEYPEYD 179 (273)
T ss_dssp HHHHHHHHH--HTCCCEEEEEETHHHHHHHHHHTGGGSCTTTCCHHHHHHHHHHTTEEEEEEESCCCCHHHHHHHCGGGH
T ss_pred HHHHHHHHh--CCcCcEEEEEeCHHHHHHHHHHHHhccCCccccccccccccCCcccceeeeecccccHHHhhhhcccHH
Confidence 999999887 5778999999999999999999885 78999999998876421
Q ss_pred --------CC------------------------Ccc------------chHHHHHHHHHhCCCcEEEEEeCCCCccCCC
Q 005240 641 --------LT------------------------PFG------------FQAERFFDALKGHGALSRLVLLPFEHHVYAA 676 (706)
Q Consensus 641 --------~~------------------------~~~------------~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~ 676 (706)
.. |.. -+..+++++|...+.+++++++|+++|.+..
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~lii~G~~D~~vp~~~~~~~~~~l~~~~~~~~~~~~~~~gH~~~~ 259 (273)
T 1vkh_A 180 CFTRLAFPDGIQMYEEEPSRVMPYVKKALSRFSIDMHLVHSYSDELLTLRQTNCLISCLQDYQLSFKLYLDDLGLHNDVY 259 (273)
T ss_dssp HHHHHHCTTCGGGCCCCHHHHHHHHHHHHHHHTCEEEEEEETTCSSCCTHHHHHHHHHHHHTTCCEEEEEECCCSGGGGG
T ss_pred HHHHHHhcccccchhhcccccChhhhhcccccCCCEEEEecCCcCCCChHHHHHHHHHHHhcCCceEEEEeCCCcccccc
Confidence 00 000 0122889999999999999999999999754
Q ss_pred cccHHHHHHHHHHHH
Q 005240 677 RENVMHVIWETDRWL 691 (706)
Q Consensus 677 ~~~~~~~~~~~~~f~ 691 (706)
.. .++.+.+.+||
T Consensus 260 ~~--~~~~~~i~~fl 272 (273)
T 1vkh_A 260 KN--GKVAKYIFDNI 272 (273)
T ss_dssp GC--HHHHHHHHHTC
T ss_pred cC--hHHHHHHHHHc
Confidence 33 56667777665
|
| >3llc_A Putative hydrolase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE PG4; 1.80A {Agrobacterium vitis} | Back alignment and structure |
|---|
Probab=99.41 E-value=5.1e-12 Score=125.72 Aligned_cols=130 Identities=13% Similarity=0.135 Sum_probs=92.7
Q ss_pred ceEEEEE-EccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEE
Q 005240 481 QKEMIKY-QRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 559 (706)
Q Consensus 481 ~~~~~~~-~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~ 559 (706)
+.+.+.+ .+.||..+....+.|.+ + +.|+||++||.+.. ...+ ........+++.||.|+
T Consensus 10 ~~~~~~~~~~~~g~~l~~~~~~~~~--~----~~~~vv~~HG~~~~-----------~~~~--~~~~~~~~l~~~g~~v~ 70 (270)
T 3llc_A 10 ETHAITVGQGSDARSIAALVRAPAQ--D----ERPTCIWLGGYRSD-----------MTGT--KALEMDDLAASLGVGAI 70 (270)
T ss_dssp EEEEEEESSGGGCEEEEEEEECCSS--T----TSCEEEEECCTTCC-----------TTSH--HHHHHHHHHHHHTCEEE
T ss_pred CcceEEEeeccCcceEEEEeccCCC--C----CCCeEEEECCCccc-----------cccc--hHHHHHHHHHhCCCcEE
Confidence 4555665 55689999888776653 1 14899999996421 0011 01124556678999999
Q ss_pred EcCCCCcCCCCCCCCc--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHh---CC---CceeEEE
Q 005240 560 AGPSIPIIGEGDKLPN--DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAH---AP---HLFCCGI 631 (706)
Q Consensus 560 ~~~~~~~~g~g~~~~~--~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~---~p---~~~~a~v 631 (706)
..+.+ |+|.+... .......++|+.++++++. ..++.++|||+||.+++.++.+ +| ++++++|
T Consensus 71 ~~d~~---G~G~s~~~~~~~~~~~~~~d~~~~~~~l~------~~~~~l~G~S~Gg~~a~~~a~~~~~~p~~~~~v~~~i 141 (270)
T 3llc_A 71 RFDYS---GHGASGGAFRDGTISRWLEEALAVLDHFK------PEKAILVGSSMGGWIALRLIQELKARHDNPTQVSGMV 141 (270)
T ss_dssp EECCT---TSTTCCSCGGGCCHHHHHHHHHHHHHHHC------CSEEEEEEETHHHHHHHHHHHHHHTCSCCSCEEEEEE
T ss_pred Eeccc---cCCCCCCccccccHHHHHHHHHHHHHHhc------cCCeEEEEeChHHHHHHHHHHHHHhccccccccceeE
Confidence 97765 44544332 2345667888888888773 5799999999999999999999 99 8999999
Q ss_pred eccCCCC
Q 005240 632 ARSGSYN 638 (706)
Q Consensus 632 ~~~~~~d 638 (706)
+.+|..+
T Consensus 142 l~~~~~~ 148 (270)
T 3llc_A 142 LIAPAPD 148 (270)
T ss_dssp EESCCTT
T ss_pred EecCccc
Confidence 9998654
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.41 E-value=3.7e-11 Score=140.11 Aligned_cols=239 Identities=13% Similarity=0.106 Sum_probs=149.6
Q ss_pred ceeEeecCCCCCCCCe-eeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeeccc-CCCc
Q 005240 6 GIGIHRLLPDDSLGPE-KEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFE-SPDI 83 (706)
Q Consensus 6 ~~~~~~~~~~~~~g~~-~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~-~~~~ 83 (706)
.|.|+++.. |+. +.++. ....+..+.|||||++||.... ...|.++++.+++...... +..
T Consensus 36 ~v~iwd~~~----~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~----------dg~i~vw~~~~~~~~~~~~~~~~- 98 (814)
T 3mkq_A 36 RVEIWNYET----QVEVRSIQV--TETPVRAGKFIARKNWIIVGSD----------DFRIRVFNYNTGEKVVDFEAHPD- 98 (814)
T ss_dssp EEEEEETTT----TEEEEEEEC--CSSCEEEEEEEGGGTEEEEEET----------TSEEEEEETTTCCEEEEEECCSS-
T ss_pred EEEEEECCC----CceEEEEec--CCCcEEEEEEeCCCCEEEEEeC----------CCeEEEEECCCCcEEEEEecCCC-
Confidence 588888866 543 33332 2235889999999999998752 3578888988877544332 222
Q ss_pred cccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEc
Q 005240 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (706)
Q Consensus 84 ~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~ 163 (706)
.+..+.|+|||++|+..+. .+.|.+++
T Consensus 99 ----~v~~~~~s~~~~~l~~~~~-------------------------------------------------dg~i~vw~ 125 (814)
T 3mkq_A 99 ----YIRSIAVHPTKPYVLSGSD-------------------------------------------------DLTVKLWN 125 (814)
T ss_dssp ----CEEEEEECSSSSEEEEEET-------------------------------------------------TSEEEEEE
T ss_pred ----CEEEEEEeCCCCEEEEEcC-------------------------------------------------CCEEEEEE
Confidence 2778999999999887642 14677777
Q ss_pred c-CC-Cc-eecCCC-ceEeeeeeCC-CCcEEEEEeeccCcccccccccccceEEEEecCCCee-EEcccCCCCCCCCccc
Q 005240 164 L-DG-TA-KDFGTP-AVYTAVEPSP-DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIPVCY 237 (706)
Q Consensus 164 l-~g-~~-~~lt~~-~~~~~~~~Sp-DG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~l~~~~~~~~~p~~~ 237 (706)
+ ++ .. ..+... ..+..++|+| ||+.|+..+.. ..|.+|++.++.. ..+.....
T Consensus 126 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-------------g~v~vwd~~~~~~~~~~~~~~~-------- 184 (814)
T 3mkq_A 126 WENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLD-------------RTVKVWSLGQSTPNFTLTTGQE-------- 184 (814)
T ss_dssp GGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETT-------------SEEEEEETTCSSCSEEEECCCT--------
T ss_pred CCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCC-------------CeEEEEECCCCcceeEEecCCC--------
Confidence 7 33 22 333333 6788999999 78777765543 3799999975433 22222210
Q ss_pred CccCCCCcceeeec--CCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCc-eEEeecccccccceecCCCceEE
Q 005240 238 NSVREGMRSISWRA--DKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP-EILHKLDLRFRSVSWCDDSLALV 314 (706)
Q Consensus 238 ~~~~~g~~~~~~sp--dg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~-~~l~~~~~~~~~~~wspDg~~l~ 314 (706)
.+...+.|+| +++. |+.. .. .+.|.+||. .+++. ..+......+..+.|+|||..|+
T Consensus 185 ----~~v~~~~~~~~~~~~~-l~~~-~~-----------dg~i~~~d~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 244 (814)
T 3mkq_A 185 ----RGVNYVDYYPLPDKPY-MITA-SD-----------DLTIKIWDY---QTKSCVATLEGHMSNVSFAVFHPTLPIII 244 (814)
T ss_dssp ----TCCCEEEECCSTTCCE-EEEE-CT-----------TSEEEEEET---TTTEEEEEEECCSSCEEEEEECSSSSEEE
T ss_pred ----CCEEEEEEEECCCCCE-EEEE-eC-----------CCEEEEEEC---CCCcEEEEEcCCCCCEEEEEEcCCCCEEE
Confidence 2244778998 7775 4432 11 125788887 44443 33445667788999999999888
Q ss_pred EEeeccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEE
Q 005240 315 NETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNV 367 (706)
Q Consensus 315 ~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l 367 (706)
..+.+ ..|.++|+.++ +.......... ....++|+|+|+.+
T Consensus 245 ~~~~d----g~v~vwd~~~~--~~~~~~~~~~~------~v~~~~~~~~~~~~ 285 (814)
T 3mkq_A 245 SGSED----GTLKIWNSSTY--KVEKTLNVGLE------RSWCIATHPTGRKN 285 (814)
T ss_dssp EEETT----SCEEEEETTTC--SEEEEECCSSS------SEEEEEECTTCGGG
T ss_pred EEeCC----CeEEEEECCCC--cEEEEeecCCC------cEEEEEEccCCCce
Confidence 76522 23666677763 22222221111 12246788888743
|
| >2qru_A Uncharacterized protein; alpha/beta-hydrolase, structural GENO PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 1.65A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.2e-11 Score=124.05 Aligned_cols=121 Identities=12% Similarity=0.174 Sum_probs=84.9
Q ss_pred cCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCC
Q 005240 490 KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGE 569 (706)
Q Consensus 490 ~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~ 569 (706)
.+|..+ .+|.|.+ ++.|+|||+|||++.. +++..+ .......+++.||.|+.++++...
T Consensus 12 ~~~~~~--~~y~p~~------~~~p~iv~~HGGg~~~--------g~~~~~---~~~~~~~l~~~g~~Vi~vdYrlaP-- 70 (274)
T 2qru_A 12 ANGATV--TIYPTTT------EPTNYVVYLHGGGMIY--------GTKSDL---PEELKELFTSNGYTVLALDYLLAP-- 70 (274)
T ss_dssp TTSCEE--EEECCSS------SSCEEEEEECCSTTTS--------CCGGGC---CHHHHHHHHTTTEEEEEECCCCTT--
T ss_pred cCCeeE--EEEcCCC------CCCcEEEEEeCccccC--------CChhhc---hHHHHHHHHHCCCEEEEeCCCCCC--
Confidence 356444 5787753 1369999999997642 221111 112345567789999999998431
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHH---hCCCceeEEEeccCCCC
Q 005240 570 GDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLA---HAPHLFCCGIARSGSYN 638 (706)
Q Consensus 570 g~~~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~---~~p~~~~a~v~~~~~~d 638 (706)
+ ......++|+.++++|+.++.. +++||+|+|+|+||.+|+.++. ..+.++++++..+|..+
T Consensus 71 -e-----~~~p~~~~D~~~al~~l~~~~~-~~~~i~l~G~SaGG~lA~~~a~~~~~~~~~~~~~vl~~~~~~ 135 (274)
T 2qru_A 71 -N-----TKIDHILRTLTETFQLLNEEII-QNQSFGLCGRSAGGYLMLQLTKQLQTLNLTPQFLVNFYGYTD 135 (274)
T ss_dssp -T-----SCHHHHHHHHHHHHHHHHHHTT-TTCCEEEEEETHHHHHHHHHHHHHHHTTCCCSCEEEESCCSC
T ss_pred -C-----CCCcHHHHHHHHHHHHHHhccc-cCCcEEEEEECHHHHHHHHHHHHHhcCCCCceEEEEEccccc
Confidence 1 1345678999999999988642 2789999999999999999987 35677888887665443
|
| >1k8q_A Triacylglycerol lipase, gastric; APHA beta hydrolase fold, hydrolase; HET: NAG BOG C11; 2.70A {Canis lupus familiaris} SCOP: c.69.1.6 PDB: 1hlg_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=1.2e-11 Score=129.78 Aligned_cols=144 Identities=14% Similarity=0.065 Sum_probs=100.4
Q ss_pred CceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEE
Q 005240 480 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 559 (706)
Q Consensus 480 ~~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~ 559 (706)
...+...+...||..+.++.+.|........++.|+||++||.+.. ...|.... ....++..|+++||.|+
T Consensus 25 ~~~~~~~~~~~dG~~l~~~~~~~~~~~~~~~~~~~~vvl~HG~~~~--------~~~~~~~~-~~~~~a~~l~~~G~~vi 95 (377)
T 1k8q_A 25 YPAEEYEVVTEDGYILGIDRIPYGRKNSENIGRRPVAFLQHGLLAS--------ATNWISNL-PNNSLAFILADAGYDVW 95 (377)
T ss_dssp CCCEEEEEECTTSEEEEEEEECSCSSCCTTTTTCCEEEEECCTTCC--------GGGGSSSC-TTTCHHHHHHHTTCEEE
T ss_pred CCceEEEeEcCCCCEEEEEEecCCCCCccccCCCCeEEEECCCCCc--------hhhhhcCC-CcccHHHHHHHCCCCEE
Confidence 4678888999999999999887654210001235889999997532 11111111 01245668889999999
Q ss_pred EcCCCCcCCCCCCCCc-----------hhhHHHHHH-HHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCC--
Q 005240 560 AGPSIPIIGEGDKLPN-----------DRFVEQLVS-SAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH-- 625 (706)
Q Consensus 560 ~~~~~~~~g~g~~~~~-----------~~~~~~~~~-D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~-- 625 (706)
..+.+ |+|.+... ......... |+.++++++.++- +.+++.++||||||.+++.++.++|+
T Consensus 96 ~~D~~---G~G~S~~~~~~~~~~~~~~~~~~~~~~~~D~~~~i~~~~~~~--~~~~~~lvG~S~Gg~ia~~~a~~~p~~~ 170 (377)
T 1k8q_A 96 LGNSR---GNTWARRNLYYSPDSVEFWAFSFDEMAKYDLPATIDFILKKT--GQDKLHYVGHSQGTTIGFIAFSTNPKLA 170 (377)
T ss_dssp ECCCT---TSTTSCEESSSCTTSTTTTCCCHHHHHHTHHHHHHHHHHHHH--CCSCEEEEEETHHHHHHHHHHHHCHHHH
T ss_pred EecCC---CCCCCCCCCCCCCCcccccCccHHHHHhhhHHHHHHHHHHhc--CcCceEEEEechhhHHHHHHHhcCchhh
Confidence 97766 44444321 123455666 9999999987752 34689999999999999999999998
Q ss_pred -ceeEEEeccCCC
Q 005240 626 -LFCCGIARSGSY 637 (706)
Q Consensus 626 -~~~a~v~~~~~~ 637 (706)
+++++|+.+|..
T Consensus 171 ~~v~~lvl~~~~~ 183 (377)
T 1k8q_A 171 KRIKTFYALAPVA 183 (377)
T ss_dssp TTEEEEEEESCCS
T ss_pred hhhhEEEEeCCch
Confidence 899999988854
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.40 E-value=1e-10 Score=123.66 Aligned_cols=302 Identities=10% Similarity=-0.028 Sum_probs=167.9
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCc-------eeecccCCCccccccccceEEecC----C--
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-------AKPLFESPDICLNAVFGSFVWVNN----S-- 98 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~-------~~~lt~~~~~~~~~~~~~~~wSpD----g-- 98 (706)
.+..+.|+| +.|+... ....|.++++++++ ...+..+.. .+..+.|+|+ |
T Consensus 18 ~i~~~~~~~--~~l~s~~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~~g~~ 80 (397)
T 1sq9_A 18 DIFSVSACN--SFTVSCS----------GDGYLKVWDNKLLDNENPKDKSYSHFVHKS-----GLHHVDVLQAIERDAFE 80 (397)
T ss_dssp CEEEEEECS--SEEEEEE----------TTSEEEEEESBCCTTCCGGGGEEEEECCTT-----CEEEEEEEEEEETTTEE
T ss_pred CeEEEEecC--CeEEEEc----------CCCEEEEEECCCcccccCCCcceEEecCCC-----cEEEEEEecccccCCcc
Confidence 578899999 6666653 23578888888876 444433322 2778999999 9
Q ss_pred -cEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCC------cee
Q 005240 99 -TLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT------AKD 170 (706)
Q Consensus 99 -~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~------~~~ 170 (706)
++|+..+.+ +.|.++++ +++ ...
T Consensus 81 ~~~l~s~~~d-------------------------------------------------g~i~iw~~~~~~~~~~~~~~~ 111 (397)
T 1sq9_A 81 LCLVATTSFS-------------------------------------------------GDLLFYRITREDETKKVIFEK 111 (397)
T ss_dssp EEEEEEEETT-------------------------------------------------SCEEEEEEEECTTTCCEEEEE
T ss_pred ccEEEEEcCC-------------------------------------------------CCEEEEEccCCccccccccee
Confidence 888776421 45667777 343 455
Q ss_pred cCCC------ceEeeeeeC----CCCcE-EEEEeeccCcccccccccccceEEEEecCC------Ce-eE-----EcccC
Q 005240 171 FGTP------AVYTAVEPS----PDQKY-VLITSMHRPYSYKVPCARFSQKVQVWTTDG------KL-VR-----ELCDL 227 (706)
Q Consensus 171 lt~~------~~~~~~~~S----pDG~~-i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------~~-~~-----~l~~~ 227 (706)
+... ..+..++|+ |+|+. |+..+.. ..|.+|++.. ++ .+ .+...
T Consensus 112 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d-------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 178 (397)
T 1sq9_A 112 LDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVK-------------GTTYIWKFHPFADESNSLTLNWSPTLELQGT 178 (397)
T ss_dssp ECCSCTTGGGSCEEEEEEECCC----CEEEEEEETT-------------SCEEEEEEESSSSHHHHTTTCCCCEEEEEEE
T ss_pred ecccccccCCCcEEEEEEeeccCCCCceEEEEEeCC-------------CcEEEEeCCccccccccceeeccCcceeeee
Confidence 5443 568899999 99999 7655443 3788998876 32 22 22110
Q ss_pred -CCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceE-Eee---c---cc
Q 005240 228 -PPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEI-LHK---L---DL 299 (706)
Q Consensus 228 -~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~-l~~---~---~~ 299 (706)
... ......+..+.|+|++ . |+... ..+.|.++|+ ..++... +.. . ..
T Consensus 179 ~~~~-------~~~~~~i~~~~~~~~~-~-l~~~~------------~dg~i~i~d~---~~~~~~~~~~~~~~h~~~~~ 234 (397)
T 1sq9_A 179 VESP-------MTPSQFATSVDISERG-L-IATGF------------NNGTVQISEL---STLRPLYNFESQHSMINNSN 234 (397)
T ss_dssp ECCS-------SSSCCCCCEEEECTTS-E-EEEEC------------TTSEEEEEET---TTTEEEEEEECCC---CCCC
T ss_pred eccc-------cCCCCCceEEEECCCc-e-EEEEe------------CCCcEEEEEC---CCCceeEEEeccccccccCC
Confidence 000 0001224578999999 5 55331 1235888888 4444433 333 4 67
Q ss_pred ccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCcc-------cccccCCCCCceEeccCCCEEEEeee
Q 005240 300 RFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVF-------ENVYSDPGSPMMTRTSTGTNVIAKIK 372 (706)
Q Consensus 300 ~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~-------~~~~~~~~~~~~~~s~dg~~l~~~~~ 372 (706)
.+..+.|+||++.|+....+ +....|.++|+.++ +....+.... ...........+.|+|+|++|+....
T Consensus 235 ~i~~i~~~~~~~~l~~~~~d-~~~g~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 311 (397)
T 1sq9_A 235 SIRSVKFSPQGSLLAIAHDS-NSFGCITLYETEFG--ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGW 311 (397)
T ss_dssp CEEEEEECSSTTEEEEEEEE-TTEEEEEEEETTTC--CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEET
T ss_pred ccceEEECCCCCEEEEEecC-CCCceEEEEECCCC--cccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeC
Confidence 78899999999988876532 12256888888874 2333222200 00001112234778999998876642
Q ss_pred ccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeeecccchh--h----h---hhhhh-hccCCCceecccCCC---
Q 005240 373 KENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREK--Y----F---ETAVA-LVFGQGEEDINLNQL--- 439 (706)
Q Consensus 373 ~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~--~----~---~~~~~-~~~~~~~~~~s~Dg~--- 439 (706)
. + .|..+|+.+++....+...... . . ..+.. .......+.|+||++
T Consensus 312 d----g-----------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~ 370 (397)
T 1sq9_A 312 D----G-----------------KLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSG 370 (397)
T ss_dssp T----S-----------------EEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBS
T ss_pred C----C-----------------eEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEecccccccc
Confidence 1 1 3556677776654444310000 0 0 00000 012233578999983
Q ss_pred ------EEEEEEecCCCCcEEEEEECCCCc
Q 005240 440 ------KILTSKESKTEITQYHILSWPLKK 463 (706)
Q Consensus 440 ------~l~~~~~~~~~p~~v~~~~~~~~~ 463 (706)
.++++.+.. ..|.+|++++|+
T Consensus 371 ~~~~~~~~l~s~~~d---g~i~iw~~~~g~ 397 (397)
T 1sq9_A 371 MGADLNESLCCVCLD---RSIRWFREAGGK 397 (397)
T ss_dssp TTCTTSCEEEEEETT---TEEEEEEEEC--
T ss_pred ccccccceEEEecCC---CcEEEEEcCCCC
Confidence 344444433 458888887663
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.39 E-value=5.2e-12 Score=135.48 Aligned_cols=191 Identities=12% Similarity=0.023 Sum_probs=120.8
Q ss_pred CCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCC
Q 005240 30 GAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSR 109 (706)
Q Consensus 30 ~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~ 109 (706)
...+...+|||||++||-... ++ .+.+++.++ ....+. +...--...+..++|||||++||..+.+
T Consensus 85 ~~~V~~vawSPdG~~LAs~s~--------dg--~V~iwd~~~-~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~D-- 150 (588)
T 2j04_A 85 VCYPRVCKPSPIDDWMAVLSN--------NG--NVSVFKDNK-MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNED-- 150 (588)
T ss_dssp SCCEEEEEECSSSSCEEEEET--------TS--CEEEEETTE-EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETT--
T ss_pred CCcEEEEEECCCCCEEEEEeC--------CC--cEEEEeCCc-eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCC--
Confidence 446889999999999998764 33 455566444 222232 1110001137789999999999987531
Q ss_pred CCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCC-Cc--------eecC---C-C-c
Q 005240 110 RDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TA--------KDFG---T-P-A 175 (706)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g-~~--------~~lt---~-~-~ 175 (706)
+.|.++++.+ .. ..+. . . .
T Consensus 151 -----------------------------------------------GtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~ 183 (588)
T 2j04_A 151 -----------------------------------------------GELQFFSIRKNSENTPEFYFESSIRLSDAGSKD 183 (588)
T ss_dssp -----------------------------------------------SEEEEEECCCCTTTCCCCEEEEEEECSCTTCCC
T ss_pred -----------------------------------------------CEEEEEECCCCccccccceeeeeeecccccccc
Confidence 5677778743 32 3331 1 1 4
Q ss_pred eEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeE----EcccCCCCCCCCcccCccCCCCcceeeec
Q 005240 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR----ELCDLPPAEDIPVCYNSVREGMRSISWRA 251 (706)
Q Consensus 176 ~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~l~~~~~~~~~p~~~~~~~~g~~~~~~sp 251 (706)
.+..++||||| |+..+.+ ..+++|+++++... .+..... ..+..++|+
T Consensus 184 ~V~sVawSPdg--Laass~D-------------~tVrlWd~~~~~~~~~~~tL~~~h~------------~~V~svaFs- 235 (588)
T 2j04_A 184 WVTHIVWYEDV--LVAALSN-------------NSVFSMTVSASSHQPVSRMIQNASR------------RKITDLKIV- 235 (588)
T ss_dssp CEEEEEEETTE--EEEEETT-------------CCEEEECCCSSSSCCCEEEEECCCS------------SCCCCEEEE-
T ss_pred cEEEEEEcCCc--EEEEeCC-------------CeEEEEECCCCccccceeeeccccc------------CcEEEEEEE-
Confidence 78899999999 5444432 47999999976632 2322210 225578899
Q ss_pred CCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEe-eccccccccee--cCCCceEEEEeeccccceEEEE
Q 005240 252 DKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH-KLDLRFRSVSW--CDDSLALVNETWYKTSQTRTWL 328 (706)
Q Consensus 252 dg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~-~~~~~~~~~~w--spDg~~l~~~~~~~~~~~~l~~ 328 (706)
|+. |+-.. + ..|.+||+ .+++...+. .+...+..+.| +||++.|+.+. +++. +||.
T Consensus 236 -g~~-LASa~--~-----------~tIkLWd~---~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~--edG~-klw~ 294 (588)
T 2j04_A 236 -DYK-VVLTC--P-----------GYVHKIDL---KNYSISSLKTGSLENFHIIPLNHEKESTILLMSN--KTSY-KVLL 294 (588)
T ss_dssp -TTE-EEEEC--S-----------SEEEEEET---TTTEEEEEECSCCSCCCEEEETTCSSCEEEEECS--SCEE-EEEE
T ss_pred -CCE-EEEEe--C-----------CeEEEEEC---CCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEc--CCCC-EEEe
Confidence 443 54221 1 24889998 666664444 56778889999 99998877653 2344 7888
Q ss_pred Ec
Q 005240 329 VC 330 (706)
Q Consensus 329 ~d 330 (706)
.|
T Consensus 295 ~d 296 (588)
T 2j04_A 295 ED 296 (588)
T ss_dssp SS
T ss_pred ec
Confidence 87
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.2e-10 Score=123.26 Aligned_cols=309 Identities=11% Similarity=0.067 Sum_probs=167.3
Q ss_pred eeEeecCCCCCCCCeeeeecCCCCCcccceeeCC-CCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCC---
Q 005240 7 IGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSP-DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD--- 82 (706)
Q Consensus 7 ~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SP-DG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~--- 82 (706)
+.+.+++. ++...+.. .....+..++||| ||+.||.... + ..|.++++++++.........
T Consensus 25 ~~v~~~~~----~~~~~~~~-~h~~~v~~~~~s~~~~~~l~~~~~--------d--g~i~iw~~~~~~~~~~~~~~~~~~ 89 (408)
T 4a11_B 25 RRVLGLEL----NKDRDVER-IHGGGINTLDIEPVEGRYMLSGGS--------D--GVIVLYDLENSSRQSYYTCKAVCS 89 (408)
T ss_dssp HHHHTEEE----CTTEEECC-CCSSCEEEEEECTTTCCEEEEEET--------T--SCEEEEECCCCSSSSCEEECEEEE
T ss_pred ceeecccc----Ccceeeee-ccCCcEEEEEEecCCCCEEEEEcC--------C--CeEEEEECCCCcccceEecccccc
Confidence 34445544 44444432 1233688999999 9999988643 3 467777877765433321000
Q ss_pred ------ccccccccceEEec-CCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcc
Q 005240 83 ------ICLNAVFGSFVWVN-NSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYT 155 (706)
Q Consensus 83 ------~~~~~~~~~~~wSp-Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 155 (706)
......+..+.|+| +++.|+..+.
T Consensus 90 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~------------------------------------------------- 120 (408)
T 4a11_B 90 IGRDHPDVHRYSVETVQWYPHDTGMFTSSSF------------------------------------------------- 120 (408)
T ss_dssp ECTTCTTCCSSCEEEEEECTTCTTCEEEEET-------------------------------------------------
T ss_pred ccccccccCCCcEEEEEEccCCCcEEEEEeC-------------------------------------------------
Confidence 00112377899999 6666665532
Q ss_pred cceEEEEcc-CCCce-ecCCCceEeeeeeCCCC---cEEEEEeeccCcccccccccccceEEEEecCCCee-EEcccCCC
Q 005240 156 TAQLVLGSL-DGTAK-DFGTPAVYTAVEPSPDQ---KYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPP 229 (706)
Q Consensus 156 ~~~l~~~~l-~g~~~-~lt~~~~~~~~~~SpDG---~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~l~~~~~ 229 (706)
.+.|.++++ +++.. .+.....+..+.|+|.+ +.|+..... ..|.+|++..++. ..+....
T Consensus 121 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~v~~~d~~~~~~~~~~~~~~- 186 (408)
T 4a11_B 121 DKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRG-------------PKVQLCDLKSGSCSHILQGHR- 186 (408)
T ss_dssp TSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESS-------------SSEEEEESSSSCCCEEECCCC-
T ss_pred CCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCC-------------CeEEEEeCCCcceeeeecCCC-
Confidence 157888888 44333 33323566777788754 466655433 3799999985543 3333221
Q ss_pred CCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCC--ceEE-------------
Q 005240 230 AEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEK--PEIL------------- 294 (706)
Q Consensus 230 ~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~--~~~l------------- 294 (706)
..+..+.|+|+++. +++....+ +.|.++|+ ..+. ...+
T Consensus 187 ------------~~v~~~~~~~~~~~-ll~~~~~d-----------g~i~i~d~---~~~~~~~~~~~~~~~~~~~~~~~ 239 (408)
T 4a11_B 187 ------------QEILAVSWSPRYDY-ILATASAD-----------SRVKLWDV---RRASGCLITLDQHNGKKSQAVES 239 (408)
T ss_dssp ------------SCEEEEEECSSCTT-EEEEEETT-----------SCEEEEET---TCSSCCSEECCTTTTCSCCCTTT
T ss_pred ------------CcEEEEEECCCCCc-EEEEEcCC-----------CcEEEEEC---CCCCcccccccccccccceeecc
Confidence 12447899999987 44343222 23666776 2221 1111
Q ss_pred --eecccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEe-ccCCCEEEEee
Q 005240 295 --HKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTR-TSTGTNVIAKI 371 (706)
Q Consensus 295 --~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-s~dg~~l~~~~ 371 (706)
......+..+.|+||++.|+..+.+ ..|.++|+.+++ ............ ......+.. ...+..+++..
T Consensus 240 ~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~vwd~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 311 (408)
T 4a11_B 240 ANTAHNGKVNGLCFTSDGLHLLTVGTD----NRMRLWNSSNGE--NTLVNYGKVCNN--SKKGLKFTVSCGCSSEFVFVP 311 (408)
T ss_dssp SSCSCSSCEEEEEECTTSSEEEEEETT----SCEEEEETTTCC--BCCCCCCCCCCC--CSSCCCCEECCSSSSCEEEEE
T ss_pred ccccccCceeEEEEcCCCCEEEEecCC----CeEEEEECCCCc--cceecccccccc--ccccceeEEecCCCceEEEEe
Confidence 2345667889999999998876522 236677777642 221111111000 001111111 22222333322
Q ss_pred eccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeeecccchhhhhhhhhhccCCCceecccCCCEEEEEEecCCCC
Q 005240 372 KKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEI 451 (706)
Q Consensus 372 ~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~p 451 (706)
. + ..+..+|+.+++....+.... .......|+||++.|+....+.
T Consensus 312 ~-------------~--------~~i~v~d~~~~~~~~~~~~~~-----------~~v~~~~~s~~~~~l~s~~~dg--- 356 (408)
T 4a11_B 312 Y-------------G--------STIAVYTVYSGEQITMLKGHY-----------KTVDCCVFQSNFQELYSGSRDC--- 356 (408)
T ss_dssp E-------------T--------TEEEEEETTTCCEEEEECCCS-----------SCEEEEEEETTTTEEEEEETTS---
T ss_pred c-------------C--------CEEEEEECcCCcceeeeccCC-----------CeEEEEEEcCCCCEEEEECCCC---
Confidence 1 1 146677877776544443221 1123578999998777654444
Q ss_pred cEEEEEECCCCce
Q 005240 452 TQYHILSWPLKKS 464 (706)
Q Consensus 452 ~~v~~~~~~~~~~ 464 (706)
.|.+|++.+++.
T Consensus 357 -~i~iw~~~~~~~ 368 (408)
T 4a11_B 357 -NILAWVPSLYEP 368 (408)
T ss_dssp -CEEEEEECC---
T ss_pred -eEEEEeCCCCCc
Confidence 499999877653
|
| >4fol_A FGH, S-formylglutathione hydrolase; D-type esterase, oxidation sensor motif, esterase activity activation, esterase activity inhibition; 2.07A {Saccharomyces cerevisiae} PDB: 1pv1_A 3c6b_A* 4flm_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=5.1e-12 Score=127.07 Aligned_cols=202 Identities=13% Similarity=0.148 Sum_probs=126.7
Q ss_pred CceEEEEEEcc-CCeEEEEEEEecCCCCCC---CCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCC
Q 005240 480 LQKEMIKYQRK-DGVPLTATLYLPPGYDQS---KDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARR 555 (706)
Q Consensus 480 ~~~~~~~~~~~-dg~~i~~~l~~P~~~~~~---~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 555 (706)
.+...+++.+. -|.++...+|+|++++.. +.+++|||+++||.+-. ...|.... ...+.+.+.|
T Consensus 12 G~~~~~~~~S~~l~~~~~~~VyLPp~y~~~~~~~~~~~PVLYlLhG~~~~--------~~~w~~~~----~~~~~~~~~~ 79 (299)
T 4fol_A 12 GRLIKLSHNSNSTKTSMNVNIYLPKHYYAQDFPRNKRIPTVFYLSGLTCT--------PDNASEKA----FWQFQADKYG 79 (299)
T ss_dssp EEEEEEEEECTTTSSEEEEEEEECGGGGCC------CBCEEEEECCTTCC--------HHHHHHHS----CHHHHHHHHT
T ss_pred CEEEEEEEECcccCCceEEEEEcCCCCCccccccCCCcCEEEEECCCCCC--------hHHHHHhc----hHhHHHHHcC
Confidence 35666777764 678999999999987532 23469999999995310 01111110 1123345689
Q ss_pred eEEEEcCCCCc-------------CCCCCCCCc----------hhhHHHHHHHHHHHHHHHHH----cCCCCCCcEEEEE
Q 005240 556 FAVLAGPSIPI-------------IGEGDKLPN----------DRFVEQLVSSAEAAVEEVVR----RGVADPSRIAVGG 608 (706)
Q Consensus 556 ~~v~~~~~~~~-------------~g~g~~~~~----------~~~~~~~~~D~~~~~~~l~~----~~~id~~~i~i~G 608 (706)
.++++++..+. .|.+..+.. ..+..-+.+++...|+..-. +...|.++.+|+|
T Consensus 80 ~~~v~p~~~p~~~~~~~~~~~~~~~g~~~~~y~d~~~~p~~~~~~~~~~l~~EL~~~i~~~f~~~~~r~~~~r~~~~i~G 159 (299)
T 4fol_A 80 FAIVFPDTSPRGDEVANDPEGSWDFGQGAGFYLNATQEPYAQHYQMYDYIHKELPQTLDSHFNKNGDVKLDFLDNVAITG 159 (299)
T ss_dssp CEEEEECSSCCSTTSCCCTTCCSSSBTTBCTTCBCCSHHHHTTCBHHHHHHTHHHHHHHHHHCC-----BCSSSSEEEEE
T ss_pred chhhccCCCcceeecCCCcccccccccCCccccccccCccccCccHHHHHHHHhHHHHHHhcccccccccccccceEEEe
Confidence 98887443211 011111111 12233455666665543221 1224567899999
Q ss_pred echHHHHHHHHHHhC--CCceeEEEeccCCCCCCCCCcc-----------------------------------------
Q 005240 609 HSYGAFMTAHLLAHA--PHLFCCGIARSGSYNKTLTPFG----------------------------------------- 645 (706)
Q Consensus 609 ~S~GG~~a~~~~~~~--p~~~~a~v~~~~~~d~~~~~~~----------------------------------------- 645 (706)
+||||+.|+.++.++ |++|+++.+.+|+.+....++.
T Consensus 160 ~SMGG~gAl~~al~~~~~~~~~~~~s~s~~~~p~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~~~~i~id~G~ 239 (299)
T 4fol_A 160 ISMGGYGAICGYLKGYSGKRYKSCSAFAPIVNPSNVPWGQKAFKGYLGEEKAQWEAYDPCLLIKNIRHVGDDRILIHVGD 239 (299)
T ss_dssp BTHHHHHHHHHHHHTGGGTCCSEEEEESCCCCGGGSHHHHHHHHHHTC-----CGGGCHHHHGGGSCCCTTCCEEEEEET
T ss_pred cCchHHHHHHHHHhCCCCCceEEEEecccccCcccccccccccccccccchhhhhhcCHHHHHHhcccCCCCceEEEecC
Confidence 999999999999985 6789999999998764321110
Q ss_pred ----c----hHHHHHHHHHhCCCc--EEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHhc
Q 005240 646 ----F----QAERFFDALKGHGAL--SRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCL 696 (706)
Q Consensus 646 ----~----~~~~~~~~l~~~~~~--~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~~~~l~ 696 (706)
+ ..+.|.+++++++++ +++...||.+|.+.. +....++.++|+.++|.
T Consensus 240 ~D~f~~~~l~~~~f~~a~~~~g~~~~~~~r~~~GydHsy~f---~~~fi~dhl~fha~~Lg 297 (299)
T 4fol_A 240 SDPFLEEHLKPELLLEAVKATSWQDYVEIKKVHGFDHSYYF---VSTFVPEHAEFHARNLG 297 (299)
T ss_dssp TCTTHHHHTCTHHHHHHHTTSTTTTCEEEEEETTCCSSHHH---HHHHHHHHHHHHHHHTT
T ss_pred CCcchhhhcCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHH---HHHHHHHHHHHHHHhcC
Confidence 0 113688999988876 789999999997542 44567778888888875
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=3.4e-11 Score=124.96 Aligned_cols=229 Identities=9% Similarity=0.082 Sum_probs=137.2
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~ 111 (706)
.+..++||||+ +|+..+. + ..|.++|+++++...........-...+..++|||||++|+..+.+
T Consensus 84 ~v~~~~~s~d~-~l~~~s~--------d--g~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d---- 148 (344)
T 4gqb_B 84 GVADLTWVGER-GILVASD--------S--GAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKD---- 148 (344)
T ss_dssp CEEEEEEETTT-EEEEEET--------T--SEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETT----
T ss_pred CEEEEEEeCCC-eEEEEEC--------C--CEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCC----
Confidence 47789999996 4544432 3 4567778777754332110000001137789999999998876421
Q ss_pred CCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCC-ceecCCC-ceEeeeeeCCCCcE
Q 005240 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGTP-AVYTAVEPSPDQKY 188 (706)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~-~~~lt~~-~~~~~~~~SpDG~~ 188 (706)
+.|.++|+ +++ ...+... ..+..++|+|+++.
T Consensus 149 ---------------------------------------------~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~ 183 (344)
T 4gqb_B 149 ---------------------------------------------ICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDS 183 (344)
T ss_dssp ---------------------------------------------SCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTT
T ss_pred ---------------------------------------------CeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCC
Confidence 46777888 554 3444444 67889999999987
Q ss_pred EEEEeeccCcccccccccccceEEEEecCCCee-EEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCC
Q 005240 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGD 267 (706)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~ 267 (706)
++++.... ..|.+||+.+++. ..+...... .....+.|+|++.. ++.....
T Consensus 184 ~l~s~s~D------------~~v~iwd~~~~~~~~~~~~~~~~-----------~~~~~~~~~p~~~~-~l~sg~~---- 235 (344)
T 4gqb_B 184 VFLSCSED------------NRILLWDTRCPKPASQIGCSAPG-----------YLPTSLAWHPQQSE-VFVFGDE---- 235 (344)
T ss_dssp EEEEEETT------------SCEEEEETTSSSCEEECC----C-----------CCEEEEEECSSCTT-EEEEEET----
T ss_pred ceeeeccc------------cccccccccccceeeeeecceee-----------ccceeeeecCCCCc-ceEEecc----
Confidence 76555432 3799999985543 333221110 11336789998776 4323211
Q ss_pred CccccCccceeeeecCCCCCCCC-ceEEeecccccccceecCCCce-EEEEeeccccceEEEEEcCCCCCCCceeeecCc
Q 005240 268 ANVEVSPRDIIYTQPAEPAEGEK-PEILHKLDLRFRSVSWCDDSLA-LVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRV 345 (706)
Q Consensus 268 ~~~~~~~~~~l~~~d~~~~~~~~-~~~l~~~~~~~~~~~wspDg~~-l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~ 345 (706)
...|.+||+ .+++ +..+..+...+..+.|+|||.. |+..+ .+ + .|.++|+.++ +...+ ...
T Consensus 236 -------dg~v~~wd~---~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs-~D-~--~i~vwd~~~~--~~~~~-~~H 298 (344)
T 4gqb_B 236 -------NGTVSLVDT---KSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLS-ED-C--SLAVLDSSLS--ELFRS-QAH 298 (344)
T ss_dssp -------TSEEEEEES---CC--CCEEEECCSSCEEEEEECSSSSCCEEEEE-TT-S--CEEEECTTCC--EEEEE-CCC
T ss_pred -------CCcEEEEEC---CCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEe-CC-C--eEEEEECCCC--cEEEE-cCC
Confidence 125888898 4444 4556667788899999999865 55443 22 2 3666687763 32222 211
Q ss_pred ccccccCCCCCceEeccCCCEEEEee
Q 005240 346 FENVYSDPGSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 346 ~~~~~~~~~~~~~~~s~dg~~l~~~~ 371 (706)
-. ....++|+|+|++++.+.
T Consensus 299 ~~------~V~~v~~sp~~~~llas~ 318 (344)
T 4gqb_B 299 RD------FVRDATWSPLNHSLLTTV 318 (344)
T ss_dssp SS------CEEEEEECSSSTTEEEEE
T ss_pred CC------CEEEEEEeCCCCeEEEEE
Confidence 11 123478999999877664
|
| >3dkr_A Esterase D; alpha beta hydrolase, mechanism, catalytic triad, rotation; 1.60A {Lactobacillus rhamnosus} SCOP: c.69.1.0 PDB: 3dlt_A 3dyi_A 3dyv_A 3e1g_A | Back alignment and structure |
|---|
Probab=99.37 E-value=7.8e-12 Score=122.79 Aligned_cols=159 Identities=17% Similarity=0.107 Sum_probs=115.6
Q ss_pred ceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCCCCch---h-hHHHHHHHHHH
Q 005240 513 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPND---R-FVEQLVSSAEA 588 (706)
Q Consensus 513 ~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~---~-~~~~~~~D~~~ 588 (706)
.|+||++||.+.. ... ...++..|+++||.|+..+.+ |+|.+.... . ..+...+|+.+
T Consensus 22 ~~~vv~~HG~~~~-----------~~~----~~~~~~~l~~~G~~v~~~d~~---g~g~s~~~~~~~~~~~~~~~~d~~~ 83 (251)
T 3dkr_A 22 DTGVVLLHAYTGS-----------PND----MNFMARALQRSGYGVYVPLFS---GHGTVEPLDILTKGNPDIWWAESSA 83 (251)
T ss_dssp SEEEEEECCTTCC-----------GGG----GHHHHHHHHHTTCEEEECCCT---TCSSSCTHHHHHHCCHHHHHHHHHH
T ss_pred CceEEEeCCCCCC-----------HHH----HHHHHHHHHHCCCEEEecCCC---CCCCCChhhhcCcccHHHHHHHHHH
Confidence 4788899996421 111 124567788899999997665 555553321 1 34566889999
Q ss_pred HHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCCCCC---------------------------
Q 005240 589 AVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTL--------------------------- 641 (706)
Q Consensus 589 ~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d~~~--------------------------- 641 (706)
+++++.++ .++++++|||+||++++.++.++|+++++++..+|......
T Consensus 84 ~i~~l~~~----~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (251)
T 3dkr_A 84 AVAHMTAK----YAKVFVFGLSLGGIFAMKALETLPGITAGGVFSSPILPGKHHLVPGFLKYAEYMNRLAGKSDESTQIL 159 (251)
T ss_dssp HHHHHHTT----CSEEEEEESHHHHHHHHHHHHHCSSCCEEEESSCCCCTTCBCHHHHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred HHHHHHHh----cCCeEEEEechHHHHHHHHHHhCccceeeEEEecchhhccchhhHHHHHHHHHHHhhcccCcchhhHH
Confidence 99999776 57999999999999999999999999999999998766221
Q ss_pred -------------------------CCcc------------chHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHH
Q 005240 642 -------------------------TPFG------------FQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVI 684 (706)
Q Consensus 642 -------------------------~~~~------------~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~ 684 (706)
.|.. -...++++.+... .+++++++|+++|.+.......++.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~gH~~~~~~~~~~~~ 238 (251)
T 3dkr_A 160 AYLPGQLAAIDQFATTVAADLNLVKQPTFIGQAGQDELVDGRLAYQLRDALINA-ARVDFHWYDDAKHVITVNSAHHALE 238 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHTGGGCCSCEEEEEETTCSSBCTTHHHHHHHHCTTC-SCEEEEEETTCCSCTTTSTTHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhccccccCCCEEEEecCCCcccChHHHHHHHHHhcCC-CCceEEEeCCCCcccccccchhHHH
Confidence 0100 0111455555443 4789999999999987665688899
Q ss_pred HHHHHHHHHH
Q 005240 685 WETDRWLQKY 694 (706)
Q Consensus 685 ~~~~~f~~~~ 694 (706)
+.+.+||++.
T Consensus 239 ~~i~~fl~~~ 248 (251)
T 3dkr_A 239 EDVIAFMQQE 248 (251)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHhh
Confidence 9999999874
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.37 E-value=1.1e-10 Score=123.87 Aligned_cols=294 Identities=11% Similarity=0.021 Sum_probs=166.1
Q ss_pred cceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCC-ce-eecccCCCccccccccceEEec-CCcEEEEEecCCCC
Q 005240 34 NFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETG-EA-KPLFESPDICLNAVFGSFVWVN-NSTLLIFTIPSSRR 110 (706)
Q Consensus 34 ~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g-~~-~~lt~~~~~~~~~~~~~~~wSp-Dg~~l~~~~~~~~~ 110 (706)
...+++|+...+++.. .+...|.++++... +. ..+....++ ...+..+.|+| ++++|+..+.+
T Consensus 38 ~~~~~~~~~~~~~~~~---------~~~g~i~v~~~~~~~~~~~~~~~~~~h--~~~V~~~~~~p~~~~~l~s~s~d--- 103 (402)
T 2aq5_A 38 GFCAVNPKFMALICEA---------SGGGAFLVLPLGKTGRVDKNVPLVCGH--TAPVLDIAWCPHNDNVIASGSED--- 103 (402)
T ss_dssp CSEEECSSEEEEEBCC---------SSSCCEEEEETTCCEECCTTCCCBCCC--SSCEEEEEECTTCTTEEEEEETT---
T ss_pred CcEEECCCeEEEEEEE---------cCCCEEEEEECccCCCCCCCCceEecC--CCCEEEEEeCCCCCCEEEEEeCC---
Confidence 3466777665554432 34467888887542 21 111111111 12377899999 88888876421
Q ss_pred CCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCC--------ceecCCC-ceEeee
Q 005240 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT--------AKDFGTP-AVYTAV 180 (706)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~--------~~~lt~~-~~~~~~ 180 (706)
+.|.++++ ++. ...+... ..+..+
T Consensus 104 ----------------------------------------------g~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 137 (402)
T 2aq5_A 104 ----------------------------------------------CTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIV 137 (402)
T ss_dssp ----------------------------------------------SEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEE
T ss_pred ----------------------------------------------CeEEEEEccCCCCccccCCceEEecCCCCeEEEE
Confidence 46777777 331 2233333 678899
Q ss_pred eeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEE
Q 005240 181 EPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWV 260 (706)
Q Consensus 181 ~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~ 260 (706)
+|+|+|+.++++.... ..|.+||+.+++........... ..+..+.|+||++. |+..
T Consensus 138 ~~~p~~~~~l~s~~~d------------g~i~iwd~~~~~~~~~~~~~~~~----------~~v~~~~~~~~~~~-l~~~ 194 (402)
T 2aq5_A 138 AWHPTAQNVLLSAGCD------------NVILVWDVGTGAAVLTLGPDVHP----------DTIYSVDWSRDGAL-ICTS 194 (402)
T ss_dssp EECSSBTTEEEEEETT------------SCEEEEETTTTEEEEEECTTTCC----------SCEEEEEECTTSSC-EEEE
T ss_pred EECcCCCCEEEEEcCC------------CEEEEEECCCCCccEEEecCCCC----------CceEEEEECCCCCE-EEEE
Confidence 9999996554454432 37999999866544322101100 22457899999987 6543
Q ss_pred EeccCCCCccccCccceeeeecCCCCCCCCce-EE-eeccc-ccccceecCCCceEEEEeeccccceEEEEEcCCCCCCC
Q 005240 261 EAQDRGDANVEVSPRDIIYTQPAEPAEGEKPE-IL-HKLDL-RFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVA 337 (706)
Q Consensus 261 ~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~-~l-~~~~~-~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~ 337 (706)
. . .+.|.+||+ ..++.. .+ ..... .+..+.|+||++.|+.... ......|.++|+.+.+ .
T Consensus 195 ~-~-----------d~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~-~~~d~~i~iwd~~~~~-~ 257 (402)
T 2aq5_A 195 C-R-----------DKRVRVIEP---RKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFS-RMSERQVALWDTKHLE-E 257 (402)
T ss_dssp E-T-----------TSEEEEEET---TTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEEC-TTCCEEEEEEETTBCS-S
T ss_pred e-c-----------CCcEEEEeC---CCCceeeeeccCCCCCcceEEEEcCCCcEEEEecc-CCCCceEEEEcCcccc-C
Confidence 2 1 125888988 444433 33 22333 3678899999998776521 1234568888887753 2
Q ss_pred ceeeecCcccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCc--eeeeecccc
Q 005240 338 PRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGS--KERIWESNR 415 (706)
Q Consensus 338 ~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~--~~~l~~~~~ 415 (706)
+..+..... ......+.|+|||++|++.... ...|..+++.+++ ...+.....
T Consensus 258 ~~~~~~~~~-----~~~v~~~~~s~~~~~l~~~g~~--------------------dg~i~i~d~~~~~~~~~~l~~~~~ 312 (402)
T 2aq5_A 258 PLSLQELDT-----SSGVLLPFFDPDTNIVYLCGKG--------------------DSSIRYFEITSEAPFLHYLSMFSS 312 (402)
T ss_dssp CSEEEECCC-----CSSCEEEEEETTTTEEEEEETT--------------------CSCEEEEEECSSTTCEEEEEEECC
T ss_pred CceEEeccC-----CCceeEEEEcCCCCEEEEEEcC--------------------CCeEEEEEecCCCcceEeeccccc
Confidence 222221110 1123357789999998766421 1135556666665 333322111
Q ss_pred hhhhhhhhhhccCCCceecccCCCEEEEEEecCCCCcEEEEEECCCCceeEee
Q 005240 416 EKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQIT 468 (706)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~p~~v~~~~~~~~~~~~lt 468 (706)
......+.|+||+..++. .. ..+.+|++.+++.+.+.
T Consensus 313 ----------~~~v~~~~~sp~~~~~~s---~~---~~~~~~~l~~~~~~~i~ 349 (402)
T 2aq5_A 313 ----------KESQRGMGYMPKRGLEVN---KC---EIARFYKLHERKCEPIA 349 (402)
T ss_dssp ----------SSCCSEEEECCGGGSCGG---GT---EEEEEEEEETTEEEEEE
T ss_pred ----------CCcccceEEeccccccee---cc---eeEEEEEcCCCcEEEEE
Confidence 012345789999876542 11 25777887777666554
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.37 E-value=1.1e-10 Score=131.08 Aligned_cols=285 Identities=10% Similarity=0.075 Sum_probs=168.3
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCC----ceeecccCCCcccccc-ccceEEec--CCcEEEEE
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETG----EAKPLFESPDICLNAV-FGSFVWVN--NSTLLIFT 104 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g----~~~~lt~~~~~~~~~~-~~~~~wSp--Dg~~l~~~ 104 (706)
.+..++|||||++||+.. ...|.+++++++ +..+...... .. +..+.|+| ||++|+..
T Consensus 20 ~v~~~~~spdg~~l~~~~-----------~~~v~v~~~~~~~~~~~~~~~~~~h~----~~~v~~~~~sp~~~~~~l~s~ 84 (615)
T 1pgu_A 20 FTTHLSYDPTTNAIAYPC-----------GKSAFVRCLDDGDSKVPPVVQFTGHG----SSVVTTVKFSPIKGSQYLCSG 84 (615)
T ss_dssp CCCCCEEETTTTEEEEEE-----------TTEEEEEECCSSCCSSCSEEEECTTT----TSCEEEEEECSSTTCCEEEEE
T ss_pred ceeEEEECCCCCEEEEec-----------CCeEEEEECCCCCCccccceEEecCC----CceEEEEEECcCCCCCEEEEe
Confidence 578899999999999964 247888888876 4333322221 23 67889999 99998876
Q ss_pred ecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CC--------C-ceecCCC
Q 005240 105 IPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG--------T-AKDFGTP 174 (706)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g--------~-~~~lt~~ 174 (706)
..+ +.|.++++ ++ + ...+...
T Consensus 85 ~~d-------------------------------------------------g~v~vw~~~~~~~~~~~~~~~~~~~~~~ 115 (615)
T 1pgu_A 85 DES-------------------------------------------------GKVIVWGWTFDKESNSVEVNVKSEFQVL 115 (615)
T ss_dssp ETT-------------------------------------------------SEEEEEEEEEEGGGTEEEEEEEEEEECC
T ss_pred cCC-------------------------------------------------CEEEEEeCCCCcccccccccccchhhcc
Confidence 421 45666666 33 1 1222222
Q ss_pred -ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCC
Q 005240 175 -AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADK 253 (706)
Q Consensus 175 -~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg 253 (706)
..+..++|+|||++|+........ ...|++|+ .+.....+.... ..+..+.|+|++
T Consensus 116 ~~~v~~~~~s~~~~~l~~~~~~~~~---------~~~v~~~d-~~~~~~~~~~~~-------------~~v~~~~~~~~~ 172 (615)
T 1pgu_A 116 AGPISDISWDFEGRRLCVVGEGRDN---------FGVFISWD-SGNSLGEVSGHS-------------QRINACHLKQSR 172 (615)
T ss_dssp SSCEEEEEECTTSSEEEEEECCSSC---------SEEEEETT-TCCEEEECCSCS-------------SCEEEEEECSSS
T ss_pred cccEEEEEEeCCCCEEEEeccCCCC---------ccEEEEEE-CCCcceeeecCC-------------ccEEEEEECCCC
Confidence 578899999999999887654321 24688888 344444443221 124478999999
Q ss_pred CceEEEEEeccCCCCccccCccceeeeecCCCCCCCCce-EEeeccc---ccccceecCC-CceEEEEeeccccceEEEE
Q 005240 254 PSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPE-ILHKLDL---RFRSVSWCDD-SLALVNETWYKTSQTRTWL 328 (706)
Q Consensus 254 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~-~l~~~~~---~~~~~~wspD-g~~l~~~~~~~~~~~~l~~ 328 (706)
+..|+.. .. ...|.+||. ..++.. .+..... .+..+.|+|| ++.|+.... ...|.+
T Consensus 173 ~~~l~~~-~~-----------d~~v~vwd~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~----dg~i~v 233 (615)
T 1pgu_A 173 PMRSMTV-GD-----------DGSVVFYQG---PPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS----DRKISC 233 (615)
T ss_dssp SCEEEEE-ET-----------TTEEEEEET---TTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET----TCCEEE
T ss_pred CcEEEEE-eC-----------CCcEEEEeC---CCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeC----CCeEEE
Confidence 8524422 11 125778887 444333 3444455 6888999999 998887652 234777
Q ss_pred EcCCCCCCCceeee-c---CcccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCC
Q 005240 329 VCPGSKDVAPRVLF-D---RVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINT 404 (706)
Q Consensus 329 ~d~~~~~~~~~~l~-~---~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~ 404 (706)
+|+.++ +....+ . .... ....+.|+ ++++|+..... ..+..+|+.+
T Consensus 234 wd~~~~--~~~~~~~~~~~~~~~------~v~~~~~~-~~~~l~~~~~d---------------------~~i~~wd~~~ 283 (615)
T 1pgu_A 234 FDGKSG--EFLKYIEDDQEPVQG------GIFALSWL-DSQKFATVGAD---------------------ATIRVWDVTT 283 (615)
T ss_dssp EETTTC--CEEEECCBTTBCCCS------CEEEEEES-SSSEEEEEETT---------------------SEEEEEETTT
T ss_pred EECCCC--CEeEEecccccccCC------ceEEEEEc-CCCEEEEEcCC---------------------CcEEEEECCC
Confidence 787764 233322 1 1111 12246788 88887766421 1355677777
Q ss_pred CceeeeecccchhhhhhhhhhccCCCceecccCCCEEEEEEecCCCCcEEEEEECCCCce
Q 005240 405 GSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKS 464 (706)
Q Consensus 405 g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~p~~v~~~~~~~~~~ 464 (706)
++....+..... ... .......|+ +++.++....+. .+++||+.+++.
T Consensus 284 ~~~~~~~~~~~~----~~~---~~~~~~~~~-~~~~l~~~~~~g----~i~~~d~~~~~~ 331 (615)
T 1pgu_A 284 SKCVQKWTLDKQ----QLG---NQQVGVVAT-GNGRIISLSLDG----TLNFYELGHDEV 331 (615)
T ss_dssp TEEEEEEECCTT----CGG---GCEEEEEEE-ETTEEEEEETTS----CEEEEETTEEEE
T ss_pred CcEEEEEcCCCC----ccc---CceeEEEeC-CCCeEEEEECCC----CEEEEECCCCcE
Confidence 765444433210 000 001123443 777776654433 488888876543
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.35 E-value=1.6e-10 Score=119.42 Aligned_cols=229 Identities=7% Similarity=-0.004 Sum_probs=138.1
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCc----eeecccCCCccccccccceEEecCCc-EEEEEec
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE----AKPLFESPDICLNAVFGSFVWVNNST-LLIFTIP 106 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~----~~~lt~~~~~~~~~~~~~~~wSpDg~-~l~~~~~ 106 (706)
.+..++|||||+.|+.... + ..|.++++.+++ .+.+..... .+..+.|+|||+ .|+....
T Consensus 13 ~v~~~~~s~~~~~l~~~~~--------d--~~v~iw~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~l~~~~~ 77 (342)
T 1yfq_A 13 YISDIKIIPSKSLLLITSW--------D--GSLTVYKFDIQAKNVDLLQSLRYKH-----PLLCCNFIDNTDLQIYVGTV 77 (342)
T ss_dssp CEEEEEEEGGGTEEEEEET--------T--SEEEEEEEETTTTEEEEEEEEECSS-----CEEEEEEEESSSEEEEEEET
T ss_pred cEEEEEEcCCCCEEEEEcC--------C--CeEEEEEeCCCCccccceeeeecCC-----ceEEEEECCCCCcEEEEEcC
Confidence 5888999999999988642 3 466667776666 444443332 277899999999 8887642
Q ss_pred CCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CC-CceecCC--C-ceEeeee
Q 005240 107 SSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGT--P-AVYTAVE 181 (706)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g-~~~~lt~--~-~~~~~~~ 181 (706)
.+.|.++++ .+ +...+.. . ..+..++
T Consensus 78 -------------------------------------------------dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~ 108 (342)
T 1yfq_A 78 -------------------------------------------------QGEILKVDLIGSPSFQALTNNEANLGICRIC 108 (342)
T ss_dssp -------------------------------------------------TSCEEEECSSSSSSEEECBSCCCCSCEEEEE
T ss_pred -------------------------------------------------CCeEEEEEeccCCceEeccccCCCCceEEEE
Confidence 157888888 65 6666665 5 6788999
Q ss_pred eCCCCcEEEEEeeccCcccccccccccceEEEEecCC---------CeeEEcccCCCCCCCCcccCccCCCCcceeeecC
Q 005240 182 PSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG---------KLVRELCDLPPAEDIPVCYNSVREGMRSISWRAD 252 (706)
Q Consensus 182 ~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---------~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spd 252 (706)
|+| ++.|+..+.. ..|.+|++.+ .+....... ...+..+.|+|+
T Consensus 109 ~~~-~~~l~s~~~d-------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~~~~~~ 161 (342)
T 1yfq_A 109 KYG-DDKLIAASWD-------------GLIEVIDPRNYGDGVIAVKNLNSNNTKV-------------KNKIFTMDTNSS 161 (342)
T ss_dssp EET-TTEEEEEETT-------------SEEEEECHHHHTTBCEEEEESCSSSSSS-------------CCCEEEEEECSS
T ss_pred eCC-CCEEEEEcCC-------------CeEEEEcccccccccccccCCeeeEEee-------------CCceEEEEecCC
Confidence 999 8888765543 3789999864 221111111 022447889988
Q ss_pred CCceEEEEEeccCCCCccccCccceeeeecCCCCCC-CC--ceEE-eecccccccceecC-CCceEEEEeeccccceEEE
Q 005240 253 KPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEG-EK--PEIL-HKLDLRFRSVSWCD-DSLALVNETWYKTSQTRTW 327 (706)
Q Consensus 253 g~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~--~~~l-~~~~~~~~~~~wsp-Dg~~l~~~~~~~~~~~~l~ 327 (706)
+ |+... . ...|.++|+ .. +. .... ......+..+.|+| |++.|+..+. ++...||
T Consensus 162 ~---l~~~~-~-----------d~~i~i~d~---~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~--dg~i~i~ 221 (342)
T 1yfq_A 162 R---LIVGM-N-----------NSQVQWFRL---PLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSI--DGRVAVE 221 (342)
T ss_dssp E---EEEEE-S-----------TTEEEEEES---SCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEET--TSEEEEE
T ss_pred c---EEEEe-C-----------CCeEEEEEC---CccccccceeeecCCCCceeEEEECCCCCCEEEEEec--CCcEEEE
Confidence 6 33221 1 125888888 43 22 2222 23466788899999 9998887652 2445566
Q ss_pred EEcCCCCC--CCceeeecCccc---ccccCCCCCceEeccCCCEEEEee
Q 005240 328 LVCPGSKD--VAPRVLFDRVFE---NVYSDPGSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 328 ~~d~~~~~--~~~~~l~~~~~~---~~~~~~~~~~~~~s~dg~~l~~~~ 371 (706)
.++..+.. .+....+..... ..........+.|+|+|++|+...
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 270 (342)
T 1yfq_A 222 FFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAG 270 (342)
T ss_dssp ECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEE
T ss_pred EEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEec
Confidence 66554100 112222221110 000000122477899999887654
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.35 E-value=9.5e-11 Score=121.43 Aligned_cols=298 Identities=10% Similarity=-0.014 Sum_probs=155.6
Q ss_pred ccceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCc
Q 005240 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (706)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~ 83 (706)
...|++.|+.. ++..+...++.......++|||||++++++. .....|+++|+++++..........
T Consensus 20 ~~~v~~~d~~~----~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~---------~~~~~i~~~d~~t~~~~~~~~~~~~ 86 (349)
T 1jmx_B 20 PNNLHVVDVAS----DTVYKSCVMPDKFGPGTAMMAPDNRTAYVLN---------NHYGDIYGIDLDTCKNTFHANLSSV 86 (349)
T ss_dssp TTEEEEEETTT----TEEEEEEECSSCCSSCEEEECTTSSEEEEEE---------TTTTEEEEEETTTTEEEEEEESCCS
T ss_pred CCeEEEEECCC----CcEEEEEecCCCCCCceeEECCCCCEEEEEe---------CCCCcEEEEeCCCCcEEEEEEcccc
Confidence 35688888876 6655443333312477899999999887654 3346899999998876543322110
Q ss_pred c--ccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEE
Q 005240 84 C--LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (706)
Q Consensus 84 ~--~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~ 161 (706)
. ....+..+.|||||++|++......... ..|. .....|++
T Consensus 87 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~-----------------------~~~~--------------~~~~~i~~ 129 (349)
T 1jmx_B 87 PGEVGRSMYSFAISPDGKEVYATVNPTQRLN-----------------------DHYV--------------VKPPRLEV 129 (349)
T ss_dssp TTEEEECSSCEEECTTSSEEEEEEEEEEECS-----------------------SCEE--------------ECCCEEEE
T ss_pred cccccccccceEECCCCCEEEEEcccccccc-----------------------cccc--------------cCCCeEEE
Confidence 0 0011567899999999888742100000 0000 01268999
Q ss_pred Ecc-CCCcee----cCCCceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcc
Q 005240 162 GSL-DGTAKD----FGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVC 236 (706)
Q Consensus 162 ~~l-~g~~~~----lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~ 236 (706)
+|+ +++... +.....+..++|+|||+ |++. . .+|++||+.+++.......... ..+..
T Consensus 130 ~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~~~-~--------------~~i~~~d~~~~~~~~~~~~~~~-~~~~~ 192 (349)
T 1jmx_B 130 FSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LYVA-G--------------PDIYKMDVKTGKYTVALPLRNW-NRKGY 192 (349)
T ss_dssp EEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EEEE-S--------------SSEEEECTTTCCEEEEECSTTC-CCTTB
T ss_pred EECCCccccceeeeccCCCcccceeECCCCc-EEEc-c--------------CcEEEEeCCCCceecccccccc-CCccc
Confidence 998 443221 11223456778999999 6552 1 2599999986655433222110 00100
Q ss_pred cCccCCCCcceeeecCCCceEEE----EEeccCCCCcccc-CccceeeeecCCCCCCCCceEEe--ecccccccceecC-
Q 005240 237 YNSVREGMRSISWRADKPSTLYW----VEAQDRGDANVEV-SPRDIIYTQPAEPAEGEKPEILH--KLDLRFRSVSWCD- 308 (706)
Q Consensus 237 ~~~~~~g~~~~~~spdg~~~l~~----~~~~~~~~~~~~~-~~~~~l~~~d~~~~~~~~~~~l~--~~~~~~~~~~wsp- 308 (706)
... . ....|+..+...++. +.....+...... .....++.++. .+++.+.+. ........+.|+|
T Consensus 193 ~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~sp~ 265 (349)
T 1jmx_B 193 SAP--D--VLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDL---KTGKTHTQEFADLTELYFTGLRSPK 265 (349)
T ss_dssp CCC--B--CCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEET---TTCCEEEEEEEECSSCEEEEEECSS
T ss_pred cCc--c--ceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEec---cCCcEEecccccCCCcceeeEecCC
Confidence 000 0 011222222210110 0000000000000 01112334666 556655543 2344567788999
Q ss_pred CCceEEEEeeccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCC
Q 005240 309 DSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGF 388 (706)
Q Consensus 309 Dg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~ 388 (706)
||+.++.. ...|+++|+.++ +........ .....+.|+|||++|++...
T Consensus 266 dg~~l~~~------~~~v~~~d~~~~--~~~~~~~~~-------~~~~~~~~s~dg~~l~~~~~---------------- 314 (349)
T 1jmx_B 266 DPNQIYGV------LNRLAKYDLKQR--KLIKAANLD-------HTYYCVAFDKKGDKLYLGGT---------------- 314 (349)
T ss_dssp CTTEEEEE------ESEEEEEETTTT--EEEEEEECS-------SCCCEEEECSSSSCEEEESB----------------
T ss_pred CCCEEEEE------cCeEEEEECccC--eEEEEEcCC-------CCccceEECCCCCEEEEecC----------------
Confidence 99988775 236999999884 332222211 01224778999998877421
Q ss_pred CCCCCCCceeeeecCCCceeeee
Q 005240 389 TPEGNIPFLDLFDINTGSKERIW 411 (706)
Q Consensus 389 ~~~~~~~~l~~~d~~~g~~~~l~ 411 (706)
...|..+|+++++....+
T Consensus 315 -----~~~v~v~d~~~~~~~~~~ 332 (349)
T 1jmx_B 315 -----FNDLAVFNPDTLEKVKNI 332 (349)
T ss_dssp -----SSEEEEEETTTTEEEEEE
T ss_pred -----CCeEEEEeccccceeeee
Confidence 124667888877654443
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.9e-10 Score=117.93 Aligned_cols=227 Identities=11% Similarity=0.101 Sum_probs=137.9
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeeccc-CCCccccccccceEEecCCcEEEEEecCCCC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFE-SPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~-~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~ 110 (706)
.+....|||||++|+..+. ...|.++|+.+++..+... +.. .+..+.|+|+++.|+..+.+
T Consensus 67 ~v~~~~~s~dg~~l~s~s~----------D~~v~~wd~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l~s~s~D--- 128 (319)
T 3frx_A 67 IVQDCTLTADGAYALSASW----------DKTLRLWDVATGETYQRFVGHKS-----DVMSVDIDKKASMIISGSRD--- 128 (319)
T ss_dssp CEEEEEECTTSSEEEEEET----------TSEEEEEETTTTEEEEEEECCSS-----CEEEEEECTTSCEEEEEETT---
T ss_pred cEEEEEECCCCCEEEEEeC----------CCEEEEEECCCCCeeEEEccCCC-----cEEEEEEcCCCCEEEEEeCC---
Confidence 5788999999999987642 3577888998887654332 222 27789999999988876431
Q ss_pred CCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCC-CceecCCC-ceEeeeeeCCCCc-
Q 005240 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TAKDFGTP-AVYTAVEPSPDQK- 187 (706)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g-~~~~lt~~-~~~~~~~~SpDG~- 187 (706)
+.|.++++.+ ....+... ..+..+.|+|+++
T Consensus 129 ----------------------------------------------~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~ 162 (319)
T 3frx_A 129 ----------------------------------------------KTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKA 162 (319)
T ss_dssp ----------------------------------------------SCEEEEETTSCEEEEECCCSSCEEEEEECCC---
T ss_pred ----------------------------------------------CeEEEEECCCCeEEEEeccCCcEEEEEEccCCCC
Confidence 4566677766 33444433 5678888998543
Q ss_pred -----EEEEEeeccCcccccccccccceEEEEecCCCeeEE-cccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEE
Q 005240 188 -----YVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRE-LCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVE 261 (706)
Q Consensus 188 -----~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~ 261 (706)
.|+..+.+ ..|.+|++...+... +..+. ..+..+.|+|||+. |+-..
T Consensus 163 ~~~~~~l~s~~~d-------------~~i~~wd~~~~~~~~~~~~h~-------------~~v~~~~~sp~g~~-l~s~~ 215 (319)
T 3frx_A 163 DDDSVTIISAGND-------------KMVKAWNLNQFQIEADFIGHN-------------SNINTLTASPDGTL-IASAG 215 (319)
T ss_dssp ---CCEEEEEETT-------------SCEEEEETTTTEEEEEECCCC-------------SCEEEEEECTTSSE-EEEEE
T ss_pred CCCccEEEEEeCC-------------CEEEEEECCcchhheeecCCC-------------CcEEEEEEcCCCCE-EEEEe
Confidence 55443332 479999998665433 22221 12457899999986 54221
Q ss_pred eccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceee
Q 005240 262 AQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVL 341 (706)
Q Consensus 262 ~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l 341 (706)
. ...|.+||+ .+++..........+..+.|+||+..|+.... ...++|.++ .. .....
T Consensus 216 -~-----------dg~i~iwd~---~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~---~~i~v~~~~--~~--~~~~~ 273 (319)
T 3frx_A 216 -K-----------DGEIMLWNL---AAKKAMYTLSAQDEVFSLAFSPNRYWLAAATA---TGIKVFSLD--PQ--YLVDD 273 (319)
T ss_dssp -T-----------TCEEEEEET---TTTEEEEEEECCSCEEEEEECSSSSEEEEEET---TEEEEEEET--TE--EEEEE
T ss_pred -C-----------CCeEEEEEC---CCCcEEEEecCCCcEEEEEEcCCCCEEEEEcC---CCcEEEEeC--cC--eeeec
Confidence 1 125888988 44443333344567888999999998887542 234555554 31 11111
Q ss_pred ecCcccc--cccCCCCCceEeccCCCEEEEee
Q 005240 342 FDRVFEN--VYSDPGSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 342 ~~~~~~~--~~~~~~~~~~~~s~dg~~l~~~~ 371 (706)
....... ....+....++|||||++|+...
T Consensus 274 ~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~ 305 (319)
T 3frx_A 274 LRPEFAGYSKAAEPHAVSLAWSADGQTLFAGY 305 (319)
T ss_dssp ECCCCTTCCGGGCCCEEEEEECTTSSEEEEEE
T ss_pred cCccccccccCcCcceeEEEECCCCCEEEEee
Confidence 1111110 01122233578999999988764
|
| >2r8b_A AGR_C_4453P, uncharacterized protein ATU2452; APC6088, agrobacterium tumefaciens STR. C58 structural genomics, PSI-2; 2.56A {Agrobacterium tumefaciens str} SCOP: c.69.1.14 | Back alignment and structure |
|---|
Probab=99.34 E-value=5.5e-12 Score=124.60 Aligned_cols=159 Identities=14% Similarity=0.070 Sum_probs=108.5
Q ss_pred ceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCCC---------CchhhHHHHH
Q 005240 513 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKL---------PNDRFVEQLV 583 (706)
Q Consensus 513 ~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~---------~~~~~~~~~~ 583 (706)
.|+||++||.+.. ...+ ...+..|+ .+|.|+.++. ...|.|.+. .........+
T Consensus 62 ~p~vv~~HG~~~~-----------~~~~----~~~~~~l~-~~~~v~~~~~-d~~g~g~s~~~~~~~~~~~~~~~~~~~~ 124 (251)
T 2r8b_A 62 APLFVLLHGTGGD-----------ENQF----FDFGARLL-PQATILSPVG-DVSEHGAARFFRRTGEGVYDMVDLERAT 124 (251)
T ss_dssp SCEEEEECCTTCC-----------HHHH----HHHHHHHS-TTSEEEEECC-SEEETTEEESSCBCGGGCBCHHHHHHHH
T ss_pred CcEEEEEeCCCCC-----------HhHH----HHHHHhcC-CCceEEEecC-CcCCCCCcccccCCCCCcCCHHHHHHHH
Confidence 6899999996421 0011 12334444 4699988632 122332211 1122344557
Q ss_pred HHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCCCCC--------CCcc----------
Q 005240 584 SSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTL--------TPFG---------- 645 (706)
Q Consensus 584 ~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d~~~--------~~~~---------- 645 (706)
.|+.++++++.++. +.++++|+|+|+||++++.++.++|++++++|+.+|..+... .|..
T Consensus 125 ~~~~~~l~~~~~~~--~~~~i~l~G~S~Gg~~a~~~a~~~p~~v~~~v~~~~~~~~~~~~~~~~~~~P~li~~g~~D~~~ 202 (251)
T 2r8b_A 125 GKMADFIKANREHY--QAGPVIGLGFSNGANILANVLIEQPELFDAAVLMHPLIPFEPKISPAKPTRRVLITAGERDPIC 202 (251)
T ss_dssp HHHHHHHHHHHHHH--TCCSEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCCCCSCCCCCCCCTTCEEEEEEETTCTTS
T ss_pred HHHHHHHHHHHhcc--CCCcEEEEEECHHHHHHHHHHHhCCcccCeEEEEecCCCccccccccccCCcEEEeccCCCccC
Confidence 88888888887764 778999999999999999999999999999999999876431 1211
Q ss_pred --chHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHhc
Q 005240 646 --FQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCL 696 (706)
Q Consensus 646 --~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~~~~l~ 696 (706)
-..++++++|...+.++++ ++++++|.+. .+..+.+.+||+++|.
T Consensus 203 ~~~~~~~~~~~l~~~~~~~~~-~~~~~gH~~~-----~~~~~~~~~~l~~~l~ 249 (251)
T 2r8b_A 203 PVQLTKALEESLKAQGGTVET-VWHPGGHEIR-----SGEIDAVRGFLAAYGG 249 (251)
T ss_dssp CHHHHHHHHHHHHHHSSEEEE-EEESSCSSCC-----HHHHHHHHHHHGGGC-
T ss_pred CHHHHHHHHHHHHHcCCeEEE-EecCCCCccC-----HHHHHHHHHHHHHhcC
Confidence 1234888889887888877 5666799874 3457889999999874
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=8.5e-10 Score=121.63 Aligned_cols=297 Identities=7% Similarity=0.007 Sum_probs=166.0
Q ss_pred eeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCCC
Q 005240 37 SWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKT 116 (706)
Q Consensus 37 ~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~ 116 (706)
.+||+|+. |+.+ .....|.++|.++++.......... +..+++||||++||.....
T Consensus 144 ~~~p~~~~--~vs~--------~~d~~V~v~D~~t~~~~~~i~~g~~-----~~~v~~spdg~~l~v~~~d--------- 199 (543)
T 1nir_A 144 DLDLPNLF--SVTL--------RDAGQIALVDGDSKKIVKVIDTGYA-----VHISRMSASGRYLLVIGRD--------- 199 (543)
T ss_dssp CCCGGGEE--EEEE--------GGGTEEEEEETTTCCEEEEEECSTT-----EEEEEECTTSCEEEEEETT---------
T ss_pred ccCCCCEE--EEEE--------cCCCeEEEEECCCceEEEEEecCcc-----cceEEECCCCCEEEEECCC---------
Confidence 58998843 3333 3346788899998886554332221 5678899999998876421
Q ss_pred CCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc---CCC-ceecCCCceEeeeeeCC----CCcE
Q 005240 117 MVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL---DGT-AKDFGTPAVYTAVEPSP----DQKY 188 (706)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l---~g~-~~~lt~~~~~~~~~~Sp----DG~~ 188 (706)
+.|.++|+ +++ ...+..+.....++||| ||++
T Consensus 200 ----------------------------------------~~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp~~~~dg~~ 239 (543)
T 1nir_A 200 ----------------------------------------ARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRY 239 (543)
T ss_dssp ----------------------------------------SEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTE
T ss_pred ----------------------------------------CeEEEEECcCCCCcEEEEEecCCCcceEEeCCCcCCCCCE
Confidence 46778887 232 33444445678999999 9999
Q ss_pred EEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCC
Q 005240 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDA 268 (706)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~ 268 (706)
|+...... ..|.+||..+.+........+.......+.. ...+..+.+|||++. +++. ..
T Consensus 240 l~v~~~~~------------~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~-~~~v~~i~~s~~~~~-~~vs-~~----- 299 (543)
T 1nir_A 240 TIAGAYWP------------PQFAIMDGETLEPKQIVSTRGMTVDTQTYHP-EPRVAAIIASHEHPE-FIVN-VK----- 299 (543)
T ss_dssp EEEEEEES------------SEEEEEETTTCCEEEEEECCEECSSSCCEES-CCCEEEEEECSSSSE-EEEE-ET-----
T ss_pred EEEEEccC------------CeEEEEeccccccceeecccCcccCcccccc-CCceEEEEECCCCCE-EEEE-EC-----
Confidence 97765432 4789999886654433222111000000000 012346789999986 4433 21
Q ss_pred ccccCccceeeeecCCCCCCCCceEE--eecccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCcc
Q 005240 269 NVEVSPRDIIYTQPAEPAEGEKPEIL--HKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVF 346 (706)
Q Consensus 269 ~~~~~~~~~l~~~d~~~~~~~~~~~l--~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~ 346 (706)
..+.|+++|. ...+...+ .........+.|+|||++|+..... ...|.++|+.++ +.....+...
T Consensus 300 -----~~g~i~vvd~---~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~---~~~v~v~D~~tg--~l~~~i~~g~ 366 (543)
T 1nir_A 300 -----ETGKVLLVNY---KDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANN---SNKVAVIDSKDR--RLSALVDVGK 366 (543)
T ss_dssp -----TTTEEEEEEC---TTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGG---GTEEEEEETTTT--EEEEEEECSS
T ss_pred -----CCCeEEEEEe---cCCCcceeEEeccCcCccCceECCCCCEEEEEecC---CCeEEEEECCCC--eEEEeeccCC
Confidence 1235888888 33332221 1234556788999999988765422 235778999884 3333322110
Q ss_pred cccccCCCCCceE-eccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCC-------Cceeeeecccchhh
Q 005240 347 ENVYSDPGSPMMT-RTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINT-------GSKERIWESNREKY 418 (706)
Q Consensus 347 ~~~~~~~~~~~~~-~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~-------g~~~~l~~~~~~~~ 418 (706)
. ..|+.. .. .+|++..++++... + ...|..+|.++ .+..+.+...+
T Consensus 367 ~---ph~g~g-~~~~~p~~g~~~~s~~~-------------~------d~~V~v~d~~~~~~~~~~~~~v~~l~~~g--- 420 (543)
T 1nir_A 367 T---PHPGRG-ANFVHPKYGPVWSTSHL-------------G------DGSISLIGTDPKNHPQYAWKKVAELQGQG--- 420 (543)
T ss_dssp S---BCCTTC-EEEEETTTEEEEEEEBS-------------S------SSEEEEEECCTTTCTTTBTSEEEEEECSC---
T ss_pred C---CCCCCC-cccCCCCCccEEEeccC-------------C------CceEEEEEeCCCCCchhcCeEEEEEEcCC---
Confidence 0 012211 12 36776665554311 0 11355566655 34333332221
Q ss_pred hhhhhhhccCCCceecccCCCEEEEEEecCC----CCcEEEEEECCCCcee
Q 005240 419 FETAVALVFGQGEEDINLNQLKILTSKESKT----EITQYHILSWPLKKSS 465 (706)
Q Consensus 419 ~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~----~p~~v~~~~~~~~~~~ 465 (706)
.+...+.++|||++|+.. +..+ .-..|.++|+++++..
T Consensus 421 --------~~~~~v~~~pdg~~l~v~-~~~~~~~~~~~~v~v~d~~~~~~~ 462 (543)
T 1nir_A 421 --------GGSLFIKTHPKSSHLYVD-TTFNPDARISQSVAVFDLKNLDAK 462 (543)
T ss_dssp --------SCCCCEECCTTCCEEEEC-CTTCSSHHHHTCEEEEETTCTTSC
T ss_pred --------CCceEEEcCCCCCcEEEe-cCCCCCcccCceEEEEECCCCCCC
Confidence 122357899999876643 2211 1237999999887643
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.34 E-value=2.6e-10 Score=122.54 Aligned_cols=255 Identities=16% Similarity=0.116 Sum_probs=148.8
Q ss_pred ceeEeecCCCCCCCCeeeeecC-CCCCcccceeeCC-CCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCc
Q 005240 6 GIGIHRLLPDDSLGPEKEVHGY-PDGAKINFVSWSP-DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (706)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~i~~~-~~~~~~~~~~~SP-DG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~ 83 (706)
.|.|+|+.. ++...+..+ .....+..++||| ||++|+..+. + ..|.++|++++..+.+......
T Consensus 143 ~i~lWd~~~----~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~--------D--~~v~iwd~~~~~~~~~~~~~~~ 208 (435)
T 4e54_B 143 DIMLWNFGI----KDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSM--------E--GTTRLQDFKGNILRVFASSDTI 208 (435)
T ss_dssp CEEEECSSC----CSCCEEECCCSSSCCCCEEEECSSCTTEEEEECS--------S--SCEEEEETTSCEEEEEECCSSC
T ss_pred EEEEEECCC----CCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeC--------C--CEEEEeeccCCceeEEeccCCC
Confidence 588888876 544433322 2234689999999 6787765432 3 4566778888766555432221
Q ss_pred cccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEc
Q 005240 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (706)
Q Consensus 84 ~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~ 163 (706)
...+..+.|+|||++|+.... .+.|.+++
T Consensus 209 --~~~~~~~~~~~~~~~l~~g~~-------------------------------------------------dg~i~~wd 237 (435)
T 4e54_B 209 --NIWFCSLDVSASSRMVVTGDN-------------------------------------------------VGNVILLN 237 (435)
T ss_dssp --SCCCCCEEEETTTTEEEEECS-------------------------------------------------SSBEEEEE
T ss_pred --CccEEEEEECCCCCEEEEEeC-------------------------------------------------CCcEeeec
Confidence 222457899999998887632 15688888
Q ss_pred cCC-CceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCee-EEcccCCCCCCCCcccCcc
Q 005240 164 LDG-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIPVCYNSV 240 (706)
Q Consensus 164 l~g-~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~l~~~~~~~~~p~~~~~~ 240 (706)
+++ ....+... ..+..++|+|+++.++++.... ..|.+||+...+. ..+......
T Consensus 238 ~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d------------~~v~iwd~~~~~~~~~~~~~~~h---------- 295 (435)
T 4e54_B 238 MDGKELWNLRMHKKKVTHVALNPCCDWFLATASVD------------QTVKIWDLRQVRGKASFLYSLPH---------- 295 (435)
T ss_dssp SSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEETT------------SBCCEEETTTCCSSSCCSBCCBC----------
T ss_pred cCcceeEEEecccceEEeeeecCCCceEEEEecCc------------ceeeEEecccccccceEEEeeec----------
Confidence 876 44445444 6788999999999877665442 3688999874432 112111111
Q ss_pred CCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCC-ceEEeecc------cccccceecCCCceE
Q 005240 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEK-PEILHKLD------LRFRSVSWCDDSLAL 313 (706)
Q Consensus 241 ~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-~~~l~~~~------~~~~~~~wspDg~~l 313 (706)
...+..+.|+|||+. |+... .+ +.|.+||+ ..++ +..+.... .......|+|++..+
T Consensus 296 ~~~v~~~~~spdg~~-l~s~~-~D-----------~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (435)
T 4e54_B 296 RHPVNAACFSPDGAR-LLTTD-QK-----------SEIRVYSA---SQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLI 359 (435)
T ss_dssp SSCEEECCBCTTSSE-EEEEE-SS-----------SCEEEEES---SSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCE
T ss_pred cccccceeECCCCCe-eEEEc-CC-----------CEEEEEEC---CCCccceEEecccccccccceeEEEEEcCCCCEE
Confidence 022457899999986 54331 11 24778887 3333 33332221 123356788988877
Q ss_pred EEEeeccc--------cceEEEEEcCCCCCCCceeeecCcccccccCCCCCce-EeccCCCEEEEe
Q 005240 314 VNETWYKT--------SQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMM-TRTSTGTNVIAK 370 (706)
Q Consensus 314 ~~~~~~~~--------~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~s~dg~~l~~~ 370 (706)
+....... ....|.++|..+++ ....+...... ....+ .|+|||++|+..
T Consensus 360 ~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~-~~~~l~~~~~~------~v~s~~~fspdg~~lasg 418 (435)
T 4e54_B 360 VVGRYPDPNFKSCTPYELRTIDVFDGNSGK-MMCQLYDPESS------GISSLNEFNPMGDTLASA 418 (435)
T ss_dssp EEECCCCTTSCCSSTTCCCCEEEECSSSCC-EEEEECCSSCC------CCCCEEEECTTSSCEEEE
T ss_pred EEEEcCCCCeEEEEecCCCEEEEEECCCCc-EEEEEeCCCCC------cEEEEEEECCCCCEEEEE
Confidence 76542211 12246777877742 11222222211 12223 589999988654
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=99.34 E-value=7e-10 Score=115.00 Aligned_cols=256 Identities=10% Similarity=0.063 Sum_probs=146.2
Q ss_pred ceeEeecCCCCCCC-CeeeeecCCC-CCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceee-cccCCC
Q 005240 6 GIGIHRLLPDDSLG-PEKEVHGYPD-GAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKP-LFESPD 82 (706)
Q Consensus 6 ~~~~~~~~~~~~~g-~~~~i~~~~~-~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~-lt~~~~ 82 (706)
.|.|+++......+ ....+..+.. ...+..++|||||+.|+..+. ...|.++|+.+++..+ +..+..
T Consensus 50 ~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~----------D~~v~lwd~~~~~~~~~~~~h~~ 119 (343)
T 2xzm_R 50 TVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSW----------DKTLRLWDLRTGTTYKRFVGHQS 119 (343)
T ss_dssp CEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEET----------TSEEEEEETTSSCEEEEEECCCS
T ss_pred EEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcC----------CCcEEEEECCCCcEEEEEcCCCC
Confidence 57888886521111 1112222222 225888999999999876542 3577788988876544 332222
Q ss_pred ccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEE
Q 005240 83 ICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLG 162 (706)
Q Consensus 83 ~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~ 162 (706)
.+..+.|+|||++|+..+.+ +.|.++
T Consensus 120 -----~v~~v~~sp~~~~l~s~~~d-------------------------------------------------~~i~~w 145 (343)
T 2xzm_R 120 -----EVYSVAFSPDNRQILSAGAE-------------------------------------------------REIKLW 145 (343)
T ss_dssp -----CEEEEEECSSTTEEEEEETT-------------------------------------------------SCEEEE
T ss_pred -----cEEEEEECCCCCEEEEEcCC-------------------------------------------------CEEEEE
Confidence 27789999999988866421 456667
Q ss_pred ccCCC-ceecC---CC-ceEeeeeeCCCC----------cEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccC
Q 005240 163 SLDGT-AKDFG---TP-AVYTAVEPSPDQ----------KYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDL 227 (706)
Q Consensus 163 ~l~g~-~~~lt---~~-~~~~~~~~SpDG----------~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 227 (706)
++.+. ...+. .. ..+..++|+|++ .+|+..+.. ..|.+|+........+..+
T Consensus 146 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d-------------~~i~iwd~~~~~~~~~~~h 212 (343)
T 2xzm_R 146 NILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWD-------------GRLKVWNTNFQIRYTFKAH 212 (343)
T ss_dssp ESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETT-------------SEEEEEETTTEEEEEEECC
T ss_pred eccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCC-------------CEEEEEcCCCceeEEEcCc
Confidence 77552 22222 12 567889999998 455443332 4799999665544444332
Q ss_pred CCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceec
Q 005240 228 PPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWC 307 (706)
Q Consensus 228 ~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~ws 307 (706)
. ..+..++|+|||+. |+... . ...|.+||+. ..+.+.........+..+.|+
T Consensus 213 ~-------------~~v~~~~~s~~g~~-l~sgs-~-----------dg~v~iwd~~--~~~~~~~~~~~~~~v~~v~~s 264 (343)
T 2xzm_R 213 E-------------SNVNHLSISPNGKY-IATGG-K-----------DKKLLIWDIL--NLTYPQREFDAGSTINQIAFN 264 (343)
T ss_dssp S-------------SCEEEEEECTTSSE-EEEEE-T-----------TCEEEEEESS--CCSSCSEEEECSSCEEEEEEC
T ss_pred c-------------ccceEEEECCCCCE-EEEEc-C-----------CCeEEEEECC--CCcccceeecCCCcEEEEEEC
Confidence 2 12457899999986 54321 1 1247788872 223333333345568899999
Q ss_pred CCCceEEEEeeccccceEEEEEcCCCCCCCceeeecC-ccccc----ccCCCCCceEeccCCCEEEEee
Q 005240 308 DDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDR-VFENV----YSDPGSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 308 pDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~-~~~~~----~~~~~~~~~~~s~dg~~l~~~~ 371 (706)
|++..++... + .. +.++++.+.+......... ..... ...+....++|+|+|++|+...
T Consensus 265 p~~~~la~~~-d--~~--v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~ 328 (343)
T 2xzm_R 265 PKLQWVAVGT-D--QG--VKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGF 328 (343)
T ss_dssp SSSCEEEEEE-S--SC--EEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEE
T ss_pred CCCCEEEEEC-C--CC--EEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEec
Confidence 9998776543 2 23 5555665532221111110 00000 0111233578999999887754
|
| >3i2k_A Cocaine esterase; alpha/beta hydrolase, hydrolase; HET: DBC GOL; 1.51A {Rhodococcus SP} PDB: 3i2j_A* 3puh_A 3i2h_A* 3i2i_A* 3i2g_A* 3ida_A* 3i2f_A* 3pui_A 1ju3_A 1ju4_A 1l7q_A 1l7r_A | Back alignment and structure |
|---|
Probab=99.34 E-value=1.8e-12 Score=143.84 Aligned_cols=138 Identities=18% Similarity=0.180 Sum_probs=103.9
Q ss_pred ceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHH-HHHHHCCeEEE
Q 005240 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSS-LIFLARRFAVL 559 (706)
Q Consensus 481 ~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~G~~v~ 559 (706)
..+.++++..||..|.+.+|.|++ .+++|+||+.||.+... ..+..+. ..+ +.|+++||+|+
T Consensus 8 ~~~~v~i~~~DG~~L~~~~~~P~~-----~~~~P~vv~~~~~g~~~--------~~~~~y~----~~~~~~la~~Gy~vv 70 (587)
T 3i2k_A 8 VASNVMVPMRDGVRLAVDLYRPDA-----DGPVPVLLVRNPYDKFD--------VFAWSTQ----STNWLEFVRDGYAVV 70 (587)
T ss_dssp EEEEEEEECTTSCEEEEEEEEECC-----SSCEEEEEEEESSCTTC--------HHHHHTT----TCCTHHHHHTTCEEE
T ss_pred EEEEEEEECCCCCEEEEEEEECCC-----CCCeeEEEEECCcCCCc--------cccccch----hhHHHHHHHCCCEEE
Confidence 457899999999999999999975 23589999998642110 0000010 123 78899999999
Q ss_pred EcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCC-CC
Q 005240 560 AGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS-YN 638 (706)
Q Consensus 560 ~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~-~d 638 (706)
..+.||..+.+..+.. .....+|+.++++||.++.+.+ .||+++|+||||+++++++.+.|+.++|+|+.++. .|
T Consensus 71 ~~D~RG~G~S~g~~~~---~~~~~~D~~~~i~~l~~~~~~~-~~v~l~G~S~GG~~a~~~a~~~~~~l~a~v~~~~~~~d 146 (587)
T 3i2k_A 71 IQDTRGLFASEGEFVP---HVDDEADAEDTLSWILEQAWCD-GNVGMFGVSYLGVTQWQAAVSGVGGLKAIAPSMASADL 146 (587)
T ss_dssp EEECTTSTTCCSCCCT---TTTHHHHHHHHHHHHHHSTTEE-EEEEECEETHHHHHHHHHHTTCCTTEEEBCEESCCSCT
T ss_pred EEcCCCCCCCCCcccc---ccchhHHHHHHHHHHHhCCCCC-CeEEEEeeCHHHHHHHHHHhhCCCccEEEEEeCCcccc
Confidence 9777755333222221 2356899999999999887766 79999999999999999999999999999999998 66
Q ss_pred C
Q 005240 639 K 639 (706)
Q Consensus 639 ~ 639 (706)
.
T Consensus 147 ~ 147 (587)
T 3i2k_A 147 Y 147 (587)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=99.33 E-value=4.7e-11 Score=124.71 Aligned_cols=230 Identities=8% Similarity=0.059 Sum_probs=130.6
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~ 111 (706)
.+..++||||++.|+-.. + ..|.++|+.+++...+.......-...+..++|+|||++|+..+.+
T Consensus 96 ~V~~~~~s~d~~~l~~s~---------d--g~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~d---- 160 (357)
T 4g56_B 96 GVTDVAWVSEKGILVASD---------S--GAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKD---- 160 (357)
T ss_dssp CEEEEEEETTTEEEEEET---------T--SCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETT----
T ss_pred CEEEEEEcCCCCEEEEEC---------C--CEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCC----
Confidence 478899999997665321 3 3566677777654332211000001237789999999998876421
Q ss_pred CCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCC-ceecCCC-ceEeeeeeCCCCcE
Q 005240 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGTP-AVYTAVEPSPDQKY 188 (706)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~-~~~lt~~-~~~~~~~~SpDG~~ 188 (706)
+.|.++|+ +++ ...+... ..+..++|+|+++.
T Consensus 161 ---------------------------------------------g~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~ 195 (357)
T 4g56_B 161 ---------------------------------------------FSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDT 195 (357)
T ss_dssp ---------------------------------------------SCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSS
T ss_pred ---------------------------------------------CeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCc
Confidence 46777788 553 3444444 67889999999986
Q ss_pred EEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCC
Q 005240 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDA 268 (706)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~ 268 (706)
++++.... ..|.+||+..++........... ..+..++|+|++.. ++.....+
T Consensus 196 ~~~s~~~d------------g~v~~wd~~~~~~~~~~~~~~~~----------~~v~~v~~sp~~~~-~la~g~~d---- 248 (357)
T 4g56_B 196 IFLSCGED------------GRILLWDTRKPKPATRIDFCASD----------TIPTSVTWHPEKDD-TFACGDET---- 248 (357)
T ss_dssp CEEEEETT------------SCEEECCTTSSSCBCBCCCTTCC----------SCEEEEEECTTSTT-EEEEEESS----
T ss_pred eeeeeccC------------CceEEEECCCCceeeeeeecccc----------ccccchhhhhcccc-eEEEeecc----
Confidence 65554432 37999999865432222111111 11347899999877 43332111
Q ss_pred ccccCccceeeeecCCCCCCCC-ceEEeecccccccceecCCCce-EEEEeeccccceEEEEEcCCCCCCCceeeecCcc
Q 005240 269 NVEVSPRDIIYTQPAEPAEGEK-PEILHKLDLRFRSVSWCDDSLA-LVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVF 346 (706)
Q Consensus 269 ~~~~~~~~~l~~~d~~~~~~~~-~~~l~~~~~~~~~~~wspDg~~-l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~ 346 (706)
..|.++|+ .+++ .+.+......+..++|+||+.. |+..+ .+ + .|.++|+.++ +....... -
T Consensus 249 -------~~i~~wd~---~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs-~D-~--~i~iwd~~~~--~~~~~~~H-~ 311 (357)
T 4g56_B 249 -------GNVSLVNI---KNPDSAQTSAVHSQNITGLAYSYHSSPFLASIS-ED-C--TVAVLDADFS--EVFRDLSH-R 311 (357)
T ss_dssp -------SCEEEEES---SCGGGCEEECCCSSCEEEEEECSSSSCCEEEEE-TT-S--CEEEECTTSC--EEEEECCC-S
T ss_pred -------cceeEEEC---CCCcEeEEEeccceeEEEEEEcCCCCCEEEEEe-CC-C--EEEEEECCCC--cEeEECCC-C
Confidence 24778888 4444 3445556778889999999865 44443 22 2 3666787773 33322211 1
Q ss_pred cccccCCCCCceEecc-CCCEEEEee
Q 005240 347 ENVYSDPGSPMMTRTS-TGTNVIAKI 371 (706)
Q Consensus 347 ~~~~~~~~~~~~~~s~-dg~~l~~~~ 371 (706)
. ....++|+| |+++|+...
T Consensus 312 ~------~V~~vafsP~d~~~l~s~s 331 (357)
T 4g56_B 312 D------FVTGVAWSPLDHSKFTTVG 331 (357)
T ss_dssp S------CEEEEEECSSSTTEEEEEE
T ss_pred C------CEEEEEEeCCCCCEEEEEc
Confidence 1 123477898 788776543
|
| >2fx5_A Lipase; alpha-beta hydrolase; HET: TLA; 1.80A {Pseudomonas mendocina} | Back alignment and structure |
|---|
Probab=99.33 E-value=5.1e-12 Score=125.47 Aligned_cols=168 Identities=13% Similarity=0.070 Sum_probs=110.7
Q ss_pred EEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCCCCch
Q 005240 497 ATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPND 576 (706)
Q Consensus 497 ~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~ 576 (706)
+.+|+|.....+ +++.|+||++||.+.. .. ....++..|+++||.|+.++.+++ +
T Consensus 34 ~~~~~p~~~~~~-g~~~p~vv~~HG~~~~-----------~~----~~~~~~~~l~~~G~~v~~~d~~~s---~------ 88 (258)
T 2fx5_A 34 CRIYRPRDLGQG-GVRHPVILWGNGTGAG-----------PS----TYAGLLSHWASHGFVVAAAETSNA---G------ 88 (258)
T ss_dssp EEEEEESSTTGG-GCCEEEEEEECCTTCC-----------GG----GGHHHHHHHHHHTCEEEEECCSCC---T------
T ss_pred EEEEeCCCCccc-CCCceEEEEECCCCCC-----------ch----hHHHHHHHHHhCCeEEEEecCCCC---c------
Confidence 788999763211 1258999999997421 11 112456778889999999887632 1
Q ss_pred hhHHHHHHHHHHHHHHHHHc---------CCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCCCC-------
Q 005240 577 RFVEQLVSSAEAAVEEVVRR---------GVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKT------- 640 (706)
Q Consensus 577 ~~~~~~~~D~~~~~~~l~~~---------~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d~~------- 640 (706)
...|+..+++++.+. ..+|.++++++||||||++++.++ .+.+++++++.+|.....
T Consensus 89 -----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~a--~~~~v~~~v~~~~~~~~~~~~~~~~ 161 (258)
T 2fx5_A 89 -----TGREMLACLDYLVRENDTPYGTYSGKLNTGRVGTSGHSQGGGGSIMAG--QDTRVRTTAPIQPYTLGLGHDSASQ 161 (258)
T ss_dssp -----TSHHHHHHHHHHHHHHHSSSSTTTTTEEEEEEEEEEEEHHHHHHHHHT--TSTTCCEEEEEEECCSSTTCCGGGG
T ss_pred -----cHHHHHHHHHHHHhcccccccccccccCccceEEEEEChHHHHHHHhc--cCcCeEEEEEecCcccccccchhhh
Confidence 012344556666542 246778999999999999999888 447899999988865411
Q ss_pred ---CCCcc---------chHHH-HHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHhcc
Q 005240 641 ---LTPFG---------FQAER-FFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCLS 697 (706)
Q Consensus 641 ---~~~~~---------~~~~~-~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~~~~l~~ 697 (706)
..|.. ...+. ..+.++..+.+++++++++++|.+... ....+.+.+.+||+++|+.
T Consensus 162 ~~i~~P~lii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~g~~H~~~~~-~~~~~~~~i~~fl~~~l~~ 230 (258)
T 2fx5_A 162 RRQQGPMFLMSGGGDTIAFPYLNAQPVYRRANVPVFWGERRYVSHFEPVG-SGGAYRGPSTAWFRFQLMD 230 (258)
T ss_dssp GCCSSCEEEEEETTCSSSCHHHHTHHHHHHCSSCEEEEEESSCCTTSSTT-TCGGGHHHHHHHHHHHHHC
T ss_pred ccCCCCEEEEEcCCCcccCchhhHHHHHhccCCCeEEEEECCCCCccccc-hHHHHHHHHHHHHHHHhcC
Confidence 11211 11111 222223345679999999999987642 3457788999999988853
|
| >3pic_A CIP2; alpha/beta hydrolase fold, glucuronoyl esterase, carbohydrat esterase family 15 (CE-15), N-linked glycosylation, secrete hydrolase; HET: NAG; 1.90A {Hypocrea jecorina} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.2e-11 Score=124.24 Aligned_cols=112 Identities=13% Similarity=0.110 Sum_probs=84.1
Q ss_pred eEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCC--------C
Q 005240 493 VPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPS--------I 564 (706)
Q Consensus 493 ~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~--------~ 564 (706)
..+...||+|.+. ++|.|+||.+||+.. . ...||+|+.-++ +
T Consensus 90 ~~~~~~i~lP~~~----~~p~Pvii~i~~~~~-------------~-------------~~~G~a~~~~~~~~v~~~~~~ 139 (375)
T 3pic_A 90 ISFTVTITYPSSG----TAPYPAIIGYGGGSL-------------P-------------APAGVAMINFNNDNIAAQVNT 139 (375)
T ss_dssp EEEEEEEECCSSS----CSSEEEEEEETTCSS-------------C-------------CCTTCEEEEECHHHHSCCSSG
T ss_pred eEEEEEEECCCCC----CCCccEEEEECCCcc-------------c-------------cCCCeEEEEecccccccccCC
Confidence 5789999999752 357999999987521 0 347898876322 4
Q ss_pred CcCCCCCCCCc-----h--hhHHHHHHHHHHHHHHHHHcC--CCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccC
Q 005240 565 PIIGEGDKLPN-----D--RFVEQLVSSAEAAVEEVVRRG--VADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSG 635 (706)
Q Consensus 565 ~~~g~g~~~~~-----~--~~~~~~~~D~~~~~~~l~~~~--~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~ 635 (706)
+++|+|. |.. . ..+....-|+..+++||.+++ .||++||+|+|+|+||.+|+++++.+ ++|+|+|+.++
T Consensus 140 gs~g~g~-f~~ly~~~~~~gal~awaWg~~raid~L~~~~~~~VD~~RIgv~G~S~gG~~al~~aA~D-~Ri~~~v~~~~ 217 (375)
T 3pic_A 140 GSRGQGK-FYDLYGSSHSAGAMTAWAWGVSRVIDALELVPGARIDTTKIGVTGCSRNGKGAMVAGAFE-KRIVLTLPQES 217 (375)
T ss_dssp GGTTCSH-HHHHHCTTCSCCHHHHHHHHHHHHHHHHHHCGGGCEEEEEEEEEEETHHHHHHHHHHHHC-TTEEEEEEESC
T ss_pred CCcccee-cccccCCccchHHHHHHHHHHHHHHHHHHhCCccCcChhhEEEEEeCCccHHHHHHHhcC-CceEEEEeccC
Confidence 5556553 220 1 112233568999999999988 89999999999999999999999999 69999999875
Q ss_pred C
Q 005240 636 S 636 (706)
Q Consensus 636 ~ 636 (706)
.
T Consensus 218 g 218 (375)
T 3pic_A 218 G 218 (375)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >1qe3_A PNB esterase, para-nitrobenzyl esterase; alpha-beta hydrolase directed evolution; 1.50A {Bacillus subtilis} SCOP: c.69.1.1 PDB: 1c7j_A 1c7i_A | Back alignment and structure |
|---|
Probab=99.32 E-value=2.5e-12 Score=139.13 Aligned_cols=169 Identities=19% Similarity=0.119 Sum_probs=115.3
Q ss_pred cCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCC-eEEEEcCCC-CcC
Q 005240 490 KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARR-FAVLAGPSI-PII 567 (706)
Q Consensus 490 ~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G-~~v~~~~~~-~~~ 567 (706)
.|+ +...+|.|..- .+ ++|+||++|||++..++... . ......|+++| ++|+..++| +..
T Consensus 80 edc--L~l~v~~P~~~--~~--~~PviV~iHGGg~~~g~~~~--------~----~~~~~~la~~g~~vvv~~nYRlg~~ 141 (489)
T 1qe3_A 80 EDC--LYVNVFAPDTP--SQ--NLPVMVWIHGGAFYLGAGSE--------P----LYDGSKLAAQGEVIVVTLNYRLGPF 141 (489)
T ss_dssp SCC--CEEEEEEECSS--CC--SEEEEEEECCSTTTSCCTTS--------G----GGCCHHHHHHHTCEEEEECCCCHHH
T ss_pred CCC--CEEEEEeCCCC--CC--CCCEEEEECCCccccCCCCC--------c----ccCHHHHHhcCCEEEEecCccCccc
Confidence 454 55568889752 12 38999999999865322111 0 11245667665 999998988 444
Q ss_pred CCCCCCC--chhhHHHHHHHHHHHHHHHHHcC---CCCCCcEEEEEechHHHHHHHHHHhC--CCceeEEEeccCCCCCC
Q 005240 568 GEGDKLP--NDRFVEQLVSSAEAAVEEVVRRG---VADPSRIAVGGHSYGAFMTAHLLAHA--PHLFCCGIARSGSYNKT 640 (706)
Q Consensus 568 g~g~~~~--~~~~~~~~~~D~~~~~~~l~~~~---~id~~~i~i~G~S~GG~~a~~~~~~~--p~~~~a~v~~~~~~d~~ 640 (706)
|++.... .....+..+.|+..+++|+.+.. -+|++||.|+|+|+||++++.++... +++|+++|+.+|..++.
T Consensus 142 Gf~~~~~~~~~~~~n~gl~D~~~al~wv~~~i~~fggDp~~V~l~G~SaGg~~~~~~~~~~~~~~lf~~~i~~sg~~~~~ 221 (489)
T 1qe3_A 142 GFLHLSSFDEAYSDNLGLLDQAAALKWVRENISAFGGDPDNVTVFGESAGGMSIAALLAMPAAKGLFQKAIMESGASRTM 221 (489)
T ss_dssp HSCCCTTTCTTSCSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHTTCGGGTTSCSEEEEESCCCCCB
T ss_pred ccCccccccccCCCCcchHHHHHHHHHHHHHHHHhCCCcceeEEEEechHHHHHHHHHhCccccchHHHHHHhCCCCCCC
Confidence 5543211 11223345789999999998852 26999999999999999999888753 57899999999976432
Q ss_pred C----------------CCc-c-------------------------------c-----------hHHHHHHHHHhCCCc
Q 005240 641 L----------------TPF-G-------------------------------F-----------QAERFFDALKGHGAL 661 (706)
Q Consensus 641 ~----------------~~~-~-------------------------------~-----------~~~~~~~~l~~~~~~ 661 (706)
. ++. . + +..+++++++..+++
T Consensus 222 ~~~~~~~~~~~~~~~~g~~~~~~~~Lr~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~D~~~~~~~~~~~~~~~~~~~vp 301 (489)
T 1qe3_A 222 TKEQAASTAAAFLQVLGINESQLDRLHTVAAEDLLKAADQLRIAEKENIFQLFFQPALDPKTLPEEPEKSIAEGAASGIP 301 (489)
T ss_dssp CHHHHHHHHHHHHHHHTCCTTCGGGGGTSCHHHHHHHHHHHHTSTTCCTTSCSSCCBCBTTTBCSCHHHHHHTTTTTTCC
T ss_pred CHHHHHHHHHHHHHHcCCCHHHHHHHHcCCHHHHHHHHHHhhhccccccCCccceEeECCeecCcCHHHHHhcCCCCCCC
Confidence 1 000 0 0 112566666677899
Q ss_pred EEEEEeCCCCccCCC
Q 005240 662 SRLVLLPFEHHVYAA 676 (706)
Q Consensus 662 ~~~~~~~~~~H~~~~ 676 (706)
+.+-.+++|+|.+..
T Consensus 302 ~~~g~~~~Eg~~~~~ 316 (489)
T 1qe3_A 302 LLIGTTRDEGYLFFT 316 (489)
T ss_dssp EEEEEETTGGGGTCC
T ss_pred EEEeeecchhHhhcc
Confidence 999999999999864
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.32 E-value=6.8e-10 Score=118.23 Aligned_cols=245 Identities=15% Similarity=0.128 Sum_probs=152.0
Q ss_pred ceeEeecCCCCCCCCee-eeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCcc
Q 005240 6 GIGIHRLLPDDSLGPEK-EVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (706)
Q Consensus 6 ~~~~~~~~~~~~~g~~~-~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~ 84 (706)
.|.|+|+.. ++.. .++... ..+..+.|+|||+.|+..+. + ..|.++|+.+++..+......
T Consensus 131 ~i~vwd~~~----~~~~~~l~~h~--~~V~~v~~~~~~~~l~sgs~--------D--~~i~iwd~~~~~~~~~~~~h~-- 192 (410)
T 1vyh_C 131 TIKVWDYET----GDFERTLKGHT--DSVQDISFDHSGKLLASCSA--------D--MTIKLWDFQGFECIRTMHGHD-- 192 (410)
T ss_dssp CEEEEETTT----CCCCEEECCCS--SCEEEEEECTTSSEEEEEET--------T--SCCCEEETTSSCEEECCCCCS--
T ss_pred eEEEEECCC----CcEEEEEeccC--CcEEEEEEcCCCCEEEEEeC--------C--CeEEEEeCCCCceeEEEcCCC--
Confidence 588889876 5433 333222 25888999999998877643 3 456666888877654432222
Q ss_pred ccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc
Q 005240 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (706)
Q Consensus 85 ~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l 164 (706)
..+..+.|+|||+.|+..+.+ +.|.++|+
T Consensus 193 --~~V~~v~~~p~~~~l~s~s~D-------------------------------------------------~~i~~wd~ 221 (410)
T 1vyh_C 193 --HNVSSVSIMPNGDHIVSASRD-------------------------------------------------KTIKMWEV 221 (410)
T ss_dssp --SCEEEEEECSSSSEEEEEETT-------------------------------------------------SEEEEEET
T ss_pred --CCEEEEEEeCCCCEEEEEeCC-------------------------------------------------CeEEEEEC
Confidence 137789999999988866421 56788888
Q ss_pred -CCC-ceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEE-cccCCCCCCCCcccCcc
Q 005240 165 -DGT-AKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRE-LCDLPPAEDIPVCYNSV 240 (706)
Q Consensus 165 -~g~-~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-l~~~~~~~~~p~~~~~~ 240 (706)
+|. ...+... ..+..+.++|||+.|+..+.+ ..|.+|++.+++... +....
T Consensus 222 ~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D-------------~~v~vwd~~~~~~~~~~~~h~------------ 276 (410)
T 1vyh_C 222 QTGYCVKTFTGHREWVRMVRPNQDGTLIASCSND-------------QTVRVWVVATKECKAELREHR------------ 276 (410)
T ss_dssp TTCCEEEEEECCSSCEEEEEECTTSSEEEEEETT-------------SCEEEEETTTCCEEEEECCCS------------
T ss_pred CCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCC-------------CeEEEEECCCCceeeEecCCC------------
Confidence 554 3444444 567889999999988766543 379999998655433 32221
Q ss_pred CCCCcceeeecCCCc------------------eEEEEEeccCCCCccccCccceeeeecCCCCCCCC-ceEEeeccccc
Q 005240 241 REGMRSISWRADKPS------------------TLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEK-PEILHKLDLRF 301 (706)
Q Consensus 241 ~~g~~~~~~spdg~~------------------~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-~~~l~~~~~~~ 301 (706)
..+..+.|+|++.. .++.... ....|.+||+ .++. ...+..+...+
T Consensus 277 -~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs-----------~D~~i~iwd~---~~~~~~~~~~~h~~~v 341 (410)
T 1vyh_C 277 -HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS-----------RDKTIKMWDV---STGMCLMTLVGHDNWV 341 (410)
T ss_dssp -SCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE-----------TTSEEEEEET---TTTEEEEEEECCSSCE
T ss_pred -ceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEe-----------CCCeEEEEEC---CCCceEEEEECCCCcE
Confidence 11346678876421 0111111 1235888988 4443 33455567778
Q ss_pred ccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEee
Q 005240 302 RSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 302 ~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 371 (706)
..+.|+|+|+.|+..+. ...|.++|+.+++ ....+ ..... ....+.|+|++.+|+...
T Consensus 342 ~~v~~~~~g~~l~s~s~----D~~i~vwd~~~~~-~~~~~-~~h~~------~v~~l~~~~~~~~l~sgs 399 (410)
T 1vyh_C 342 RGVLFHSGGKFILSCAD----DKTLRVWDYKNKR-CMKTL-NAHEH------FVTSLDFHKTAPYVVTGS 399 (410)
T ss_dssp EEEEECSSSSCEEEEET----TTEEEEECCTTSC-CCEEE-ECCSS------CEEEEEECSSSSCEEEEE
T ss_pred EEEEEcCCCCEEEEEeC----CCeEEEEECCCCc-eEEEE-cCCCC------cEEEEEEcCCCCEEEEEe
Confidence 89999999999887652 2246667776642 22222 21111 122477899999877654
|
| >1dqz_A 85C, protein (antigen 85-C); fibronectin, structural genomics, PSI, protein structure initiative, TB structural genomics consortium; 1.50A {Mycobacterium tuberculosis} SCOP: c.69.1.3 PDB: 3hrh_A 1dqy_A 1va5_A* 1f0n_A* 1f0p_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=2.9e-11 Score=121.56 Aligned_cols=190 Identities=13% Similarity=0.016 Sum_probs=120.7
Q ss_pred ceEEEEEEcc-CCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEE
Q 005240 481 QKEMIKYQRK-DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 559 (706)
Q Consensus 481 ~~~~~~~~~~-dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~ 559 (706)
+.+.+++.+. .+.++..+ .|+.+ . |+||++||.+... ....|... ....+.+++.||+|+
T Consensus 5 ~~~~~~~~s~~~~~~~~v~--~~p~~---~----~~v~llHG~~~~~------~~~~w~~~----~~~~~~l~~~~~~vv 65 (280)
T 1dqz_A 5 PVEYLQVPSASMGRDIKVQ--FQGGG---P----HAVYLLDGLRAQD------DYNGWDIN----TPAFEEYYQSGLSVI 65 (280)
T ss_dssp CEEEEEEEETTTTEEEEEE--EECCS---S----SEEEECCCTTCCS------SSCHHHHH----SCHHHHHTTSSSEEE
T ss_pred eEEEEEEECcccCceeEEE--EcCCC---C----CEEEEECCCCCCC------Cccccccc----CcHHHHHhcCCeEEE
Confidence 4566777764 56677755 45543 1 4788899973100 00011100 012345667899999
Q ss_pred EcCCCCcCCCCCCC---------CchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEE
Q 005240 560 AGPSIPIIGEGDKL---------PNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCG 630 (706)
Q Consensus 560 ~~~~~~~~g~g~~~---------~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~ 630 (706)
+++.++..++.... ....+.....+|+... +.++..+++++++|+|+||||++|+.++.++|++|+++
T Consensus 66 ~pd~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~---i~~~~~~~~~~~~l~G~S~GG~~al~~a~~~p~~~~~~ 142 (280)
T 1dqz_A 66 MPVGGQSSFYTDWYQPSQSNGQNYTYKWETFLTREMPAW---LQANKGVSPTGNAAVGLSMSGGSALILAAYYPQQFPYA 142 (280)
T ss_dssp EECCCTTCTTSBCSSSCTTTTCCSCCBHHHHHHTHHHHH---HHHHHCCCSSSCEEEEETHHHHHHHHHHHHCTTTCSEE
T ss_pred EECCCCCccccCCCCCCccccccccccHHHHHHHHHHHH---HHHHcCCCCCceEEEEECHHHHHHHHHHHhCCchheEE
Confidence 98776443332110 0112222223444444 43433367789999999999999999999999999999
Q ss_pred EeccCCCCCCC-----------------------------------------------CCc-------cc----------
Q 005240 631 IARSGSYNKTL-----------------------------------------------TPF-------GF---------- 646 (706)
Q Consensus 631 v~~~~~~d~~~-----------------------------------------------~~~-------~~---------- 646 (706)
++.+|.++... .|. ..
T Consensus 143 v~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~l~~~~~~~~l~~G~~D~~~~~~~~~~~ 222 (280)
T 1dqz_A 143 ASLSGFLNPSESWWPTLIGLAMNDSGGYNANSMWGPSSDPAWKRNDPMVQIPRLVANNTRIWVYCGNGTPSDLGGDNIPA 222 (280)
T ss_dssp EEESCCCCTTSTTHHHHHHHHHHHTTSCCHHHHHCSTTSHHHHHTCTTTTHHHHHHHTCEEEEECCCSCCCTTCCCSHHH
T ss_pred EEecCcccccCcchhhhHHHHhhhccCcCHHHhcCCCCchhhhhcCHHHHHHHHHhcCCeEEEEeCCCCcccccccccch
Confidence 99998765321 000 00
Q ss_pred ---------hHHHHHHHHHhCC-CcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHh
Q 005240 647 ---------QAERFFDALKGHG-ALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYC 695 (706)
Q Consensus 647 ---------~~~~~~~~l~~~~-~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~~~~l 695 (706)
+..+++++|+++| +++++.+|++++|.+. .+...+...+.||.+.|
T Consensus 223 ~~~e~~~~~~~~~~~~~L~~~g~~~~~~~~~~~g~H~~~---~w~~~l~~~l~~l~~~l 278 (280)
T 1dqz_A 223 KFLEGLTLRTNQTFRDTYAADGGRNGVFNFPPNGTHSWP---YWNEQLVAMKADIQHVL 278 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCSEEEECCSCCCSSHH---HHHHHHHHTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhCCCCceEEEecCCCccChH---HHHHHHHHHHHHHHHHh
Confidence 1238999999999 9999999999999763 24556677788887766
|
| >3rm3_A MGLP, thermostable monoacylglycerol lipase; alpha/beta hydrolase fold, hydrolase; 1.20A {Bacillus SP} PDB: 3rli_A | Back alignment and structure |
|---|
Probab=99.31 E-value=7.8e-12 Score=124.74 Aligned_cols=158 Identities=16% Similarity=0.180 Sum_probs=112.3
Q ss_pred ceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCCCCc--hhhHHHHHHHHHHHH
Q 005240 513 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPN--DRFVEQLVSSAEAAV 590 (706)
Q Consensus 513 ~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~--~~~~~~~~~D~~~~~ 590 (706)
.|+||++||.+.. ... ...++..|+++||.|+.++.+ |+|.+... .......++|+.+++
T Consensus 40 ~~~vv~~HG~~~~-----------~~~----~~~~~~~l~~~G~~v~~~d~~---G~G~s~~~~~~~~~~~~~~d~~~~i 101 (270)
T 3rm3_A 40 PVGVLLVHGFTGT-----------PHS----MRPLAEAYAKAGYTVCLPRLK---GHGTHYEDMERTTFHDWVASVEEGY 101 (270)
T ss_dssp SEEEEEECCTTCC-----------GGG----THHHHHHHHHTTCEEEECCCT---TCSSCHHHHHTCCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCC-----------hhH----HHHHHHHHHHCCCEEEEeCCC---CCCCCccccccCCHHHHHHHHHHHH
Confidence 3899999996421 011 124567788899999997665 55554321 123556788999999
Q ss_pred HHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCCCCCC---------------------------C
Q 005240 591 EEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLT---------------------------P 643 (706)
Q Consensus 591 ~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d~~~~---------------------------~ 643 (706)
+++.++ ..+++++|+|+||++++.++.++|+ ++++|+.+|..+.... .
T Consensus 102 ~~l~~~----~~~i~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (270)
T 3rm3_A 102 GWLKQR----CQTIFVTGLSMGGTLTLYLAEHHPD-ICGIVPINAAVDIPAIAAGMTGGGELPRYLDSIGSDLKNPDVKE 176 (270)
T ss_dssp HHHHTT----CSEEEEEEETHHHHHHHHHHHHCTT-CCEEEEESCCSCCHHHHHHSCC---CCSEEECCCCCCSCTTCCC
T ss_pred HHHHhh----CCcEEEEEEcHhHHHHHHHHHhCCC-ccEEEEEcceecccccccchhcchhHHHHHHHhCccccccchHh
Confidence 999765 5799999999999999999999999 9999999986532100 0
Q ss_pred ccc-------------------------------------------hHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccH
Q 005240 644 FGF-------------------------------------------QAERFFDALKGHGALSRLVLLPFEHHVYAARENV 680 (706)
Q Consensus 644 ~~~-------------------------------------------~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~ 680 (706)
..+ ...++++.+. +.+++++++|+++|.+......
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~lii~G~~D~~~~~~~~~~~~~~~~--~~~~~~~~~~~~gH~~~~~~~~ 254 (270)
T 3rm3_A 177 LAYEKTPTASLLQLARLMAQTKAKLDRIVCPALIFVSDEDHVVPPGNADIIFQGIS--STEKEIVRLRNSYHVATLDYDQ 254 (270)
T ss_dssp CCCSEEEHHHHHHHHHHHHHHHHTGGGCCSCEEEEEETTCSSSCTTHHHHHHHHSC--CSSEEEEEESSCCSCGGGSTTH
T ss_pred hcccccChhHHHHHHHHHHHHHhhhhhcCCCEEEEECCCCcccCHHHHHHHHHhcC--CCcceEEEeCCCCcccccCccH
Confidence 000 0013333332 2467999999999998765556
Q ss_pred HHHHHHHHHHHHHHh
Q 005240 681 MHVIWETDRWLQKYC 695 (706)
Q Consensus 681 ~~~~~~~~~f~~~~l 695 (706)
.++.+.+.+||+++.
T Consensus 255 ~~~~~~i~~fl~~~~ 269 (270)
T 3rm3_A 255 PMIIERSLEFFAKHA 269 (270)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcC
Confidence 789999999999864
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.31 E-value=2e-11 Score=128.30 Aligned_cols=227 Identities=12% Similarity=0.054 Sum_probs=130.1
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~ 111 (706)
.+..++|||||++||.... + ..|.++++.++..+.+.....+ ...+..+.|+|||++|+..+.+
T Consensus 13 ~v~~~~~s~~g~~l~~~~~--------d--~~i~iw~~~~~~~~~~~~~~~h--~~~v~~~~~s~~~~~l~s~s~d---- 76 (377)
T 3dwl_C 13 PSYEHAFNSQRTEFVTTTA--------T--NQVELYEQDGNGWKHARTFSDH--DKIVTCVDWAPKSNRIVTCSQD---- 76 (377)
T ss_dssp CCSCCEECSSSSEEECCCS--------S--SCBCEEEEETTEEEECCCBCCC--SSCEEEEEECTTTCCEEEEETT----
T ss_pred cEEEEEECCCCCEEEEecC--------C--CEEEEEEccCCceEEEEEEecC--CceEEEEEEeCCCCEEEEEeCC----
Confidence 5889999999999987532 3 4555566666632222211211 1237789999999988876421
Q ss_pred CCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCC----ceecCCC-ceEeeeeeCCC
Q 005240 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT----AKDFGTP-AVYTAVEPSPD 185 (706)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~----~~~lt~~-~~~~~~~~SpD 185 (706)
+.|.++++ +++ ...+... ..+..++|+||
T Consensus 77 ---------------------------------------------~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 111 (377)
T 3dwl_C 77 ---------------------------------------------RNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPN 111 (377)
T ss_dssp ---------------------------------------------SSEEEC------CCCCEEECCCCSSCEEEEECCTT
T ss_pred ---------------------------------------------CeEEEEEcCCCCceeeeeEecccCCceEEEEECCC
Confidence 45666777 333 2233333 67889999999
Q ss_pred CcEEEEEeeccCcccccccccccceEEEEecCCCe----eEEccc-CCCCCCCCcccCccCCCCcceeeecCCCceEEEE
Q 005240 186 QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL----VRELCD-LPPAEDIPVCYNSVREGMRSISWRADKPSTLYWV 260 (706)
Q Consensus 186 G~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~l~~-~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~ 260 (706)
|+.|+..+.. ..|.+|++++++ .+.+.. .. ..+..+.|+||++. |+..
T Consensus 112 ~~~l~~~~~d-------------~~i~iwd~~~~~~~~~~~~~~~~h~-------------~~v~~~~~~~~~~~-l~~~ 164 (377)
T 3dwl_C 112 EDKFAVGSGA-------------RVISVCYFEQENDWWVSKHLKRPLR-------------STILSLDWHPNNVL-LAAG 164 (377)
T ss_dssp SSCCEEEESS-------------SCEEECCC-----CCCCEEECSSCC-------------SCEEEEEECTTSSE-EEEE
T ss_pred CCEEEEEecC-------------CeEEEEEECCcccceeeeEeecccC-------------CCeEEEEEcCCCCE-EEEE
Confidence 9999876654 378999998664 344432 11 22457899999986 5433
Q ss_pred EeccCCCCccccCccceeeeecCCCCCCCC---------------ceEE---eecccccccceecCCCceEEEEeecccc
Q 005240 261 EAQDRGDANVEVSPRDIIYTQPAEPAEGEK---------------PEIL---HKLDLRFRSVSWCDDSLALVNETWYKTS 322 (706)
Q Consensus 261 ~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~---------------~~~l---~~~~~~~~~~~wspDg~~l~~~~~~~~~ 322 (706)
. .+ ..|.+||+ ..++ ...+ ......+..+.|+|||+.|+..+.+
T Consensus 165 ~-~d-----------~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d--- 226 (377)
T 3dwl_C 165 C-AD-----------RKAYVLSA---YVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHD--- 226 (377)
T ss_dssp E-SS-----------SCEEEEEE---CCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETT---
T ss_pred e-CC-----------CEEEEEEE---EecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCC---
Confidence 2 11 23666665 2111 0111 1345667889999999988876522
Q ss_pred ceEEEEEcCCCCCCCceee--ecCcccccccCCCCCceEeccCCCEEEEee
Q 005240 323 QTRTWLVCPGSKDVAPRVL--FDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 323 ~~~l~~~d~~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 371 (706)
..|.++|+.+++..+..+ ...... ....+.|+|||++|+...
T Consensus 227 -~~i~iwd~~~~~~~~~~~~~~~~~~~------~v~~~~~s~~~~~l~~~~ 270 (377)
T 3dwl_C 227 -SSVTIAYPSAPEQPPRALITVKLSQL------PLRSLLWANESAIVAAGY 270 (377)
T ss_dssp -TEEC-CEECSTTSCEEECCCEECSSS------CEEEEEEEETTEEEEEES
T ss_pred -CcEEEEECCCCCCcceeeEeecCCCC------ceEEEEEcCCCCEEEEEc
Confidence 246666666643211111 111111 122477899999886653
|
| >1qlw_A Esterase; anisotropic refinement, atomic resolution, alpha/beta hydrolase; 1.09A {Alcaligenes SP} SCOP: c.69.1.15 PDB: 2wkw_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=8.2e-11 Score=121.21 Aligned_cols=95 Identities=19% Similarity=0.185 Sum_probs=75.2
Q ss_pred cEEEEEechHHHHHHHHHHhCCCceeEEEeccCCC--C---C---CCCCcc-----------------chHHHHHHHHHh
Q 005240 603 RIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSY--N---K---TLTPFG-----------------FQAERFFDALKG 657 (706)
Q Consensus 603 ~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~--d---~---~~~~~~-----------------~~~~~~~~~l~~ 657 (706)
++.++|||+||.+++.++.++|++++++|+.+|.. + . ...|.. -...++++.|.+
T Consensus 199 ~~~lvGhS~GG~~a~~~a~~~p~~v~~~v~~~p~~~~~~~~~~~~~~~PvLii~G~~D~~~p~~~~~~~~~~~~~~~l~~ 278 (328)
T 1qlw_A 199 GTVLLSHSQSGIYPFQTAAMNPKGITAIVSVEPGECPKPEDVKPLTSIPVLVVFGDHIEEFPRWAPRLKACHAFIDALNA 278 (328)
T ss_dssp SEEEEEEGGGTTHHHHHHHHCCTTEEEEEEESCSCCCCGGGCGGGTTSCEEEEECSSCTTCTTTHHHHHHHHHHHHHHHH
T ss_pred CceEEEECcccHHHHHHHHhChhheeEEEEeCCCCCCCHHHHhhccCCCEEEEeccCCccccchhhHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999742 1 0 111210 123478899999
Q ss_pred CCCcEEEEEeCCCC-----ccCCCcccHHHHHHHHHHHHHHHhcc
Q 005240 658 HGALSRLVLLPFEH-----HVYAARENVMHVIWETDRWLQKYCLS 697 (706)
Q Consensus 658 ~~~~~~~~~~~~~~-----H~~~~~~~~~~~~~~~~~f~~~~l~~ 697 (706)
.+.+++++++|+++ |.+....+..++.+.+.+||++++.+
T Consensus 279 ~g~~~~~~~~~~~gi~G~~H~~~~~~~~~~~~~~i~~fl~~~~~~ 323 (328)
T 1qlw_A 279 AGGKGQLMSLPALGVHGNSHMMMQDRNNLQVADLILDWIGRNTAK 323 (328)
T ss_dssp TTCCEEEEEGGGGTCCCCCTTGGGSTTHHHHHHHHHHHHHHTCC-
T ss_pred hCCCceEEEcCCCCcCCCcccchhccCHHHHHHHHHHHHHhcccC
Confidence 99999999999555 98876655788999999999998754
|
| >4f0j_A Probable hydrolytic enzyme; alpha/beta hydrolase fold, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.50A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.30 E-value=6e-11 Score=120.78 Aligned_cols=128 Identities=13% Similarity=0.148 Sum_probs=87.1
Q ss_pred CceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEE
Q 005240 480 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 559 (706)
Q Consensus 480 ~~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~ 559 (706)
...+.+.+.. +|..+....+.+..-. +..|+||++||.+.. ... ....+..|+++||.|+
T Consensus 18 ~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~p~vv~~hG~~~~-----------~~~----~~~~~~~l~~~g~~v~ 77 (315)
T 4f0j_A 18 YPVHYLDFTS-QGQPLSMAYLDVAPKK----ANGRTILLMHGKNFC-----------AGT----WERTIDVLADAGYRVI 77 (315)
T ss_dssp SCCEEEEEEE-TTEEEEEEEEEECCSS----CCSCEEEEECCTTCC-----------GGG----GHHHHHHHHHTTCEEE
T ss_pred ccceeEEEec-CCCCeeEEEeecCCCC----CCCCeEEEEcCCCCc-----------chH----HHHHHHHHHHCCCeEE
Confidence 3567777775 6666666555543311 235899999997421 011 1245677888999999
Q ss_pred EcCCCCcCCCCCCCCc---hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCC
Q 005240 560 AGPSIPIIGEGDKLPN---DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 636 (706)
Q Consensus 560 ~~~~~~~~g~g~~~~~---~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~ 636 (706)
..+.+ |+|.+... ........+|+..+++.+ +.+++.++|||+||++++.++.++|++++++++.+|.
T Consensus 78 ~~d~~---G~G~s~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~ 148 (315)
T 4f0j_A 78 AVDQV---GFCKSSKPAHYQYSFQQLAANTHALLERL------GVARASVIGHSMGGMLATRYALLYPRQVERLVLVNPI 148 (315)
T ss_dssp EECCT---TSTTSCCCSSCCCCHHHHHHHHHHHHHHT------TCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCS
T ss_pred EeecC---CCCCCCCCCccccCHHHHHHHHHHHHHHh------CCCceEEEEecHHHHHHHHHHHhCcHhhheeEEecCc
Confidence 97665 44444332 223445555555554432 4468999999999999999999999999999999985
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=5.7e-10 Score=115.84 Aligned_cols=223 Identities=14% Similarity=0.136 Sum_probs=127.7
Q ss_pred ceeEeecCCCCCCCCeeeeecCC--CCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCc
Q 005240 6 GIGIHRLLPDDSLGPEKEVHGYP--DGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (706)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~i~~~~--~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~ 83 (706)
.|.|.++.. ++......+. ....+..++|||||++||..+. ++...|| +..++....+....++
T Consensus 39 ~i~iw~~~~----~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~--------D~~v~iw--~~~~~~~~~~~~~~~h 104 (345)
T 3fm0_A 39 RIRIWGTEG----DSWICKSVLSEGHQRTVRKVAWSPCGNYLASASF--------DATTCIW--KKNQDDFECVTTLEGH 104 (345)
T ss_dssp CEEEEEEET----TEEEEEEEECSSCSSCEEEEEECTTSSEEEEEET--------TSCEEEE--EECCC-EEEEEEECCC
T ss_pred eEEEEEcCC----CcceeeeeeccccCCcEEEEEECCCCCEEEEEEC--------CCcEEEE--EccCCCeEEEEEccCC
Confidence 577888765 4322111111 2235888999999999988653 4444455 5555543222211111
Q ss_pred cccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEc
Q 005240 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (706)
Q Consensus 84 ~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~ 163 (706)
...+..++|+|||++|+..+.+ +.|.+++
T Consensus 105 --~~~v~~v~~sp~~~~l~s~s~D-------------------------------------------------~~v~iwd 133 (345)
T 3fm0_A 105 --ENEVKSVAWAPSGNLLATCSRD-------------------------------------------------KSVWVWE 133 (345)
T ss_dssp --SSCEEEEEECTTSSEEEEEETT-------------------------------------------------SCEEEEE
T ss_pred --CCCceEEEEeCCCCEEEEEECC-------------------------------------------------CeEEEEE
Confidence 1137789999999998876431 4566667
Q ss_pred cC-C-Cc---eecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCccc
Q 005240 164 LD-G-TA---KDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCY 237 (706)
Q Consensus 164 l~-g-~~---~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~ 237 (706)
+. + .. ..+... ..+..++|+|||+.|+..+.+ ..|.+|++..+....+....+..
T Consensus 134 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d-------------~~i~~w~~~~~~~~~~~~~~~h~------ 194 (345)
T 3fm0_A 134 VDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYD-------------DTVKLYREEEDDWVCCATLEGHE------ 194 (345)
T ss_dssp ECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETT-------------SCEEEEEEETTEEEEEEEECCCS------
T ss_pred CCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCC-------------CcEEEEEecCCCEEEEEEecCCC------
Confidence 63 3 22 223333 578899999999998866544 36889988765433222222111
Q ss_pred CccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCc------------e---EEee-ccccc
Q 005240 238 NSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP------------E---ILHK-LDLRF 301 (706)
Q Consensus 238 ~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~------------~---~l~~-~~~~~ 301 (706)
..+..++|+|||+. |+... .+ . .|.+|+.. ..+.. + .+.. ....+
T Consensus 195 ----~~v~~l~~sp~g~~-l~s~s-~D---~--------~v~iW~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 255 (345)
T 3fm0_A 195 ----STVWSLAFDPSGQR-LASCS-DD---R--------TVRIWRQY--LPGNEQGVACSGSDPSWKCICTLSGFHSRTI 255 (345)
T ss_dssp ----SCEEEEEECTTSSE-EEEEE-TT---S--------CEEEEEEE--CTTCTTCCCCC---CEEEEEEEECSSCSSCE
T ss_pred ----CceEEEEECCCCCE-EEEEe-CC---C--------eEEEeccc--cCCCCccceeeccCCccceeEEecCCCCCcE
Confidence 22457899999986 54332 11 1 24444431 01110 1 1111 34567
Q ss_pred ccceecCCCceEEEEeeccccceEEEEEcCCC
Q 005240 302 RSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (706)
Q Consensus 302 ~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~ 333 (706)
..++|+|++..|+..+. ++..+||..+...
T Consensus 256 ~~v~~~~~~~~l~s~~~--d~~i~vw~~~~~~ 285 (345)
T 3fm0_A 256 YDIAWCQLTGALATACG--DDAIRVFQEDPNS 285 (345)
T ss_dssp EEEEECTTTCCEEEEET--TSCEEEEEECTTS
T ss_pred EEEEEecCCCEEEEEeC--CCeEEEEEeCCCC
Confidence 88999999998887653 3456677766443
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.30 E-value=9.3e-10 Score=115.19 Aligned_cols=193 Identities=12% Similarity=0.109 Sum_probs=102.6
Q ss_pred eEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhcc
Q 005240 63 RVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLL 142 (706)
Q Consensus 63 ~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (706)
.+|.+|.++|+.+.+....... ...+..++|||||++|+....
T Consensus 17 ~~~~~d~~~g~l~~~~~~~~~~-~~~~~~~a~spdg~~l~~~~~------------------------------------ 59 (365)
T 1jof_A 17 FTVQFDDEKLTCKLIKRTEIPQ-DEPISWMTFDHERKNIYGAAM------------------------------------ 59 (365)
T ss_dssp EEEEEETTTTEEEEEEEEECCT-TCCCSEEEECTTSSEEEEEEB------------------------------------
T ss_pred EEEEEECCCCCEEEeeEEccCC-CCCCcEEEECCCCCEEEEEcc------------------------------------
Confidence 3444566778776664311000 012567899999998876532
Q ss_pred CCchhhhhhhhcccceEEEEcc--CCCceecCC---CceEeeeeeCCCCcEE-EEEeeccCccccccccc----ccceEE
Q 005240 143 KDEYDESLFDYYTTAQLVLGSL--DGTAKDFGT---PAVYTAVEPSPDQKYV-LITSMHRPYSYKVPCAR----FSQKVQ 212 (706)
Q Consensus 143 ~~~~d~~~~~~~~~~~l~~~~l--~g~~~~lt~---~~~~~~~~~SpDG~~i-~~~~~~~~~~~~~~~~~----~~~~i~ 212 (706)
..+.++++ +|+...+.. .+....++|||||++| +++....... .+.. ....+.
T Consensus 60 --------------~~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~---~~~~~~~~~~g~v~ 122 (365)
T 1jof_A 60 --------------KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYA---VYANPFYKFAGYGN 122 (365)
T ss_dssp --------------TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCC---EEEEEESSSCCEEE
T ss_pred --------------ceEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcce---eccceeecCCceEE
Confidence 13444444 454433321 1234468899999974 4444310000 0000 024677
Q ss_pred EEecC--CCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCC-CC
Q 005240 213 VWTTD--GKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAE-GE 289 (706)
Q Consensus 213 ~~~~~--~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~ 289 (706)
+|+++ +...+.+....... ...+..+.|||||+. |+.. +. + .+.|+++++ + ++
T Consensus 123 v~~~~~~g~~~~~~~~~~~~~---------~~~~~~~~~spdG~~-l~~~-~~--~--------~~~v~~~~~---~~~g 178 (365)
T 1jof_A 123 VFSVSETGKLEKNVQNYEYQE---------NTGIHGMVFDPTETY-LYSA-DL--T--------ANKLWTHRK---LASG 178 (365)
T ss_dssp EEEECTTCCEEEEEEEEECCT---------TCCEEEEEECTTSSE-EEEE-ET--T--------TTEEEEEEE---CTTS
T ss_pred EEccCCCCcCcceEeeEEeCC---------CCcceEEEECCCCCE-EEEE-cC--C--------CCEEEEEEE---CCCC
Confidence 88876 33222222110000 012347799999986 6533 22 1 124788888 4 56
Q ss_pred CceEEeec-----ccccccceecCCCceEEEEeeccccceEEEEEcCCCC
Q 005240 290 KPEILHKL-----DLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK 334 (706)
Q Consensus 290 ~~~~l~~~-----~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~ 334 (706)
+.+.+... ......++|+|||+.|++.. ..++...+|.++.+++
T Consensus 179 ~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~-~~~~~v~v~~~~~~~g 227 (365)
T 1jof_A 179 EVELVGSVDAPDPGDHPRWVAMHPTGNYLYALM-EAGNRICEYVIDPATH 227 (365)
T ss_dssp CEEEEEEEECSSTTCCEEEEEECTTSSEEEEEE-TTTTEEEEEEECTTTC
T ss_pred CEEEeeeEecCCCCCCCCEeEECCCCCEEEEEE-CCCCeEEEEEEeCCCC
Confidence 65443221 23466789999999887764 3334556777777553
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.29 E-value=3.3e-10 Score=119.74 Aligned_cols=227 Identities=12% Similarity=0.004 Sum_probs=133.4
Q ss_pred cceeEeecCCCCCCCC-------eeeeecCCCCCcccceeeCCC----C---CeEEEEeeccccccccCCceeEEEEEcC
Q 005240 5 TGIGIHRLLPDDSLGP-------EKEVHGYPDGAKINFVSWSPD----G---KRIAFSVRVDEEDNVSSCKLRVWIADAE 70 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~-------~~~i~~~~~~~~~~~~~~SPD----G---~~laf~~~~~~~~~~~~~~~~l~~~d~~ 70 (706)
..|.|+++.. ++ ...+.. ....+..+.|+|| | +.|+.... + ..|.++++.
T Consensus 36 g~i~iw~~~~----~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~g~~~~~l~s~~~--------d--g~i~iw~~~ 99 (397)
T 1sq9_A 36 GYLKVWDNKL----LDNENPKDKSYSHFV--HKSGLHHVDVLQAIERDAFELCLVATTSF--------S--GDLLFYRIT 99 (397)
T ss_dssp SEEEEEESBC----CTTCCGGGGEEEEEC--CTTCEEEEEEEEEEETTTEEEEEEEEEET--------T--SCEEEEEEE
T ss_pred CEEEEEECCC----cccccCCCcceEEec--CCCcEEEEEEecccccCCccccEEEEEcC--------C--CCEEEEEcc
Confidence 3688999977 55 444442 2235889999999 9 88877642 3 456667776
Q ss_pred CCc------eeecccCCCccccccccceEEe----cCCcE-EEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccch
Q 005240 71 TGE------AKPLFESPDICLNAVFGSFVWV----NNSTL-LIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTD 139 (706)
Q Consensus 71 ~g~------~~~lt~~~~~~~~~~~~~~~wS----pDg~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (706)
+++ ...+...........+..+.|+ |+++. |+.....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d-------------------------------- 147 (397)
T 1sq9_A 100 REDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVK-------------------------------- 147 (397)
T ss_dssp ECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETT--------------------------------
T ss_pred CCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCC--------------------------------
Confidence 666 4444433100001237789999 99998 7765421
Q ss_pred hccCCchhhhhhhhcccceEEEEcc-C------C-Cce-----ecC-------CC-ceEeeeeeCCCCcEEEEEeeccCc
Q 005240 140 NLLKDEYDESLFDYYTTAQLVLGSL-D------G-TAK-----DFG-------TP-AVYTAVEPSPDQKYVLITSMHRPY 198 (706)
Q Consensus 140 ~~~~~~~d~~~~~~~~~~~l~~~~l-~------g-~~~-----~lt-------~~-~~~~~~~~SpDG~~i~~~~~~~~~ 198 (706)
+.|.++++ + + ... .+. .. ..+..++|+|+| .|+.....
T Consensus 148 -----------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d--- 206 (397)
T 1sq9_A 148 -----------------GTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNN--- 206 (397)
T ss_dssp -----------------SCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTT---
T ss_pred -----------------CcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCC---
Confidence 34555555 3 3 222 331 12 567899999999 66554432
Q ss_pred ccccccccccceEEEEecCCCeeEEcccC-CCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccce
Q 005240 199 SYKVPCARFSQKVQVWTTDGKLVRELCDL-PPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDI 277 (706)
Q Consensus 199 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~-~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~ 277 (706)
..|.+|++...+....... ...... ...+..+.|+|+++. |+... .++ ..+.
T Consensus 207 ----------g~i~i~d~~~~~~~~~~~~~~~h~~~-------~~~i~~i~~~~~~~~-l~~~~-~d~--------~~g~ 259 (397)
T 1sq9_A 207 ----------GTVQISELSTLRPLYNFESQHSMINN-------SNSIRSVKFSPQGSL-LAIAH-DSN--------SFGC 259 (397)
T ss_dssp ----------SEEEEEETTTTEEEEEEECCC---CC-------CCCEEEEEECSSTTE-EEEEE-EET--------TEEE
T ss_pred ----------CcEEEEECCCCceeEEEecccccccc-------CCccceEEECCCCCE-EEEEe-cCC--------CCce
Confidence 3799999986554332222 000000 022457899999986 54332 110 0025
Q ss_pred eeeecCCCCCCCCce-EEee-------------cccccccceecCCCceEEEEeeccccceEEEEEcCCCC
Q 005240 278 IYTQPAEPAEGEKPE-ILHK-------------LDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK 334 (706)
Q Consensus 278 l~~~d~~~~~~~~~~-~l~~-------------~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~ 334 (706)
|.+||+ ..++.. .+.. ....+..+.|+||++.|+..+. ...|.++|+.++
T Consensus 260 i~i~d~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~ 323 (397)
T 1sq9_A 260 ITLYET---EFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGW----DGKLRFWDVKTK 323 (397)
T ss_dssp EEEEET---TTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEET----TSEEEEEETTTT
T ss_pred EEEEEC---CCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeC----CCeEEEEEcCCC
Confidence 888888 444433 3444 5677889999999998887652 235777788774
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=99.29 E-value=1.9e-09 Score=111.58 Aligned_cols=242 Identities=10% Similarity=0.074 Sum_probs=143.7
Q ss_pred ceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCc--ee---ecccC
Q 005240 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE--AK---PLFES 80 (706)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~--~~---~lt~~ 80 (706)
.|.|.++.. ++...... .....+....|||||+.||.... + ..+.++++.+++ .+ .+..+
T Consensus 78 ~v~iWd~~~----~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~--------d--~~v~iw~~~~~~~~~~~~~~~~~h 142 (340)
T 1got_B 78 KLIIWDSYT----TNKVHAIP-LRSSWVMTCAYAPSGNYVACGGL--------D--NICSIYNLKTREGNVRVSRELAGH 142 (340)
T ss_dssp EEEEEETTT----CCEEEEEE-CSSSCEEEEEECTTSSEEEEEET--------T--CEEEEEETTTCSBSCEEEEEEECC
T ss_pred cEEEEECCC----CCcceEee-cCCccEEEEEECCCCCEEEEEeC--------C--CeEEEEECccCCCcceeEEEecCC
Confidence 477777755 44332211 12224778899999999987643 2 466667776543 11 12212
Q ss_pred CCccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEE
Q 005240 81 PDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLV 160 (706)
Q Consensus 81 ~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~ 160 (706)
.. .+....|+++++ |+..+. .+.|.
T Consensus 143 ~~-----~v~~~~~~~~~~-l~s~s~-------------------------------------------------d~~i~ 167 (340)
T 1got_B 143 TG-----YLSCCRFLDDNQ-IVTSSG-------------------------------------------------DTTCA 167 (340)
T ss_dssp SS-----CEEEEEEEETTE-EEEEET-------------------------------------------------TSCEE
T ss_pred Cc-----cEEEEEECCCCc-EEEEEC-------------------------------------------------CCcEE
Confidence 22 266788999987 444321 14677
Q ss_pred EEcc-CCC-ceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCee-EEcccCCCCCCCCcc
Q 005240 161 LGSL-DGT-AKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIPVC 236 (706)
Q Consensus 161 ~~~l-~g~-~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~l~~~~~~~~~p~~ 236 (706)
++|+ +++ ...+... ..+..++|+|||+.|+..+.+ ..|.+||+..+.. ..+....
T Consensus 168 ~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d-------------~~v~~wd~~~~~~~~~~~~h~-------- 226 (340)
T 1got_B 168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACD-------------ASAKLWDVREGMCRQTFTGHE-------- 226 (340)
T ss_dssp EEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT-------------SCEEEEETTTCSEEEEECCCS--------
T ss_pred EEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCC-------------CcEEEEECCCCeeEEEEcCCc--------
Confidence 7788 553 3444444 678899999999988755443 3799999986543 3333221
Q ss_pred cCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeec---ccccccceecCCCceE
Q 005240 237 YNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL---DLRFRSVSWCDDSLAL 313 (706)
Q Consensus 237 ~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~---~~~~~~~~wspDg~~l 313 (706)
..+..+.|+|+++. |+... .+ ..|.+||+ ..++....... ...+..+.|+|||+.|
T Consensus 227 -----~~v~~v~~~p~~~~-l~s~s-~d-----------~~v~iwd~---~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 285 (340)
T 1got_B 227 -----SDINAICFFPNGNA-FATGS-DD-----------ATCRLFDL---RADQELMTYSHDNIICGITSVSFSKSGRLL 285 (340)
T ss_dssp -----SCEEEEEECTTSSE-EEEEE-TT-----------SCEEEEET---TTTEEEEEECCTTCCSCEEEEEECTTSSEE
T ss_pred -----CCEEEEEEcCCCCE-EEEEc-CC-----------CcEEEEEC---CCCcEEEEEccCCcccceEEEEECCCCCEE
Confidence 12457899999986 54321 11 24778887 43332222222 2356788999999988
Q ss_pred EEEeeccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEee
Q 005240 314 VNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 314 ~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 371 (706)
+..+. ...|.++|+.++ +........-.. ...+.|+|||++|+...
T Consensus 286 ~~g~~----d~~i~vwd~~~~--~~~~~~~~h~~~------v~~~~~s~dg~~l~s~s 331 (340)
T 1got_B 286 LAGYD----DFNCNVWDALKA--DRAGVLAGHDNR------VSCLGVTDDGMAVATGS 331 (340)
T ss_dssp EEEET----TSEEEEEETTTC--CEEEEEECCSSC------EEEEEECTTSSCEEEEE
T ss_pred EEECC----CCeEEEEEcccC--cEeeEeecCCCc------EEEEEEcCCCCEEEEEc
Confidence 87652 234777777663 222222221111 22367899999887654
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.28 E-value=1.8e-09 Score=115.39 Aligned_cols=279 Identities=13% Similarity=0.132 Sum_probs=162.9
Q ss_pred ccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCC
Q 005240 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDP 112 (706)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~ 112 (706)
..-+.||++ +.||... ...|+++|+.+|+..++...... ...+..++|||||++|+..+.+
T Consensus 108 ~~~l~wS~~-n~lAvgl-----------d~tV~lWd~~tg~~~~~~~~~~~--~~~V~sv~fspdg~~lasgs~D----- 168 (420)
T 4gga_A 108 LNLVDWSSG-NVLAVAL-----------DNSVYLWSASSGDILQLLQMEQP--GEYISSVAWIKEGNYLAVGTSS----- 168 (420)
T ss_dssp CBCEEECTT-SEEEEEE-----------TTEEEEEETTTCCEEEEEECCST--TCCEEEEEECTTSSEEEEEETT-----
T ss_pred ceeEEECCC-CEEEEEe-----------CCEEEEEECCCCCEEEEEEecCC--CCcEEEEEECCCCCEEEEEECC-----
Confidence 345789986 4776643 25899999999988776543221 1237789999999998876431
Q ss_pred CCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCC-ceecCCC-ceEeeeeeCCCCcEE
Q 005240 113 PKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGTP-AVYTAVEPSPDQKYV 189 (706)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~-~~~lt~~-~~~~~~~~SpDG~~i 189 (706)
+.|.++++ +++ .+.+... ..+..+ +++++.|
T Consensus 169 --------------------------------------------g~v~iWd~~~~~~~~~~~~h~~~v~~~--s~~~~~l 202 (420)
T 4gga_A 169 --------------------------------------------AEVQLWDVQQQKRLRNMTSHSARVGSL--SWNSYIL 202 (420)
T ss_dssp --------------------------------------------SCEEEEETTTTEEEEEECCCSSCEEEE--EEETTEE
T ss_pred --------------------------------------------CeEEEEEcCCCcEEEEEeCCCCceEEE--eeCCCEE
Confidence 56777788 553 3444433 444444 4567766
Q ss_pred EEEeeccCcccccccccccceEEEEecCCCe--eEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCC
Q 005240 190 LITSMHRPYSYKVPCARFSQKVQVWTTDGKL--VRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGD 267 (706)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~ 267 (706)
+..+.. ..+.+|+..... +..+.... .....+.|+|+|+. |+... .+
T Consensus 203 ~sgs~d-------------~~i~~~d~~~~~~~~~~~~~h~-------------~~~~~~~~~~~g~~-l~s~~-~D--- 251 (420)
T 4gga_A 203 SSGSRS-------------GHIHHHDVRVAEHHVATLSGHS-------------QEVCGLRWAPDGRH-LASGG-ND--- 251 (420)
T ss_dssp EEEETT-------------SEEEEEETTSSSCEEEEEECCS-------------SCEEEEEECTTSSE-EEEEE-TT---
T ss_pred EEEeCC-------------CceeEeeecccceeeEEecccc-------------cceeeeeecCCCCe-eeeee-cc---
Confidence 544432 368888877432 23332221 11346789999986 54331 11
Q ss_pred CccccCccceeeeecCCCCCCCC-----ceEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeee
Q 005240 268 ANVEVSPRDIIYTQPAEPAEGEK-----PEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLF 342 (706)
Q Consensus 268 ~~~~~~~~~~l~~~d~~~~~~~~-----~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~ 342 (706)
+.+.+++. ..++ ..........+..+.|+|++..+++.... .....|.++|+.++ +.....
T Consensus 252 --------~~v~i~~~---~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~g-s~D~~I~iwd~~t~--~~~~~~ 317 (420)
T 4gga_A 252 --------NLVNVWPS---APGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG-TSDRHIRIWNVCSG--ACLSAV 317 (420)
T ss_dssp --------SCEEEEES---SCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEEC-TTTCEEEEEETTTT--EEEEEE
T ss_pred --------ccceEEee---ccccccceeeeeecccCCceeeeeeCCCcccEEEEEee-cCCCEEEEEeCCcc--ccceee
Confidence 23667776 3332 22334456678889999998766654321 12235777788774 222222
Q ss_pred cCcccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeeecccchhhhhhh
Q 005240 343 DRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETA 422 (706)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~ 422 (706)
.... ......|+++++.++..... ....|..+|..+++....+.+.
T Consensus 318 ~~~~-------~v~~~~~~~~~~~lv~~sg~-------------------~d~~I~iwd~~~~~~v~~l~gH-------- 363 (420)
T 4gga_A 318 DAHS-------QVCSILWSPHYKELISGHGF-------------------AQNQLVIWKYPTMAKVAELKGH-------- 363 (420)
T ss_dssp ECSS-------CEEEEEEETTTTEEEEEECT-------------------TTCCEEEEETTTCCEEEEECCC--------
T ss_pred cccc-------ceeeeeecCCCCeEEEEEec-------------------CCCEEEEEECCCCcEEEEEcCC--------
Confidence 2111 12236689999988776411 1124666787777654433321
Q ss_pred hhhccCCCceecccCCCEEEEEEecCCCCcEEEEEECCCC
Q 005240 423 VALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLK 462 (706)
Q Consensus 423 ~~~~~~~~~~~~s~Dg~~l~~~~~~~~~p~~v~~~~~~~~ 462 (706)
......++|||||+.|+....+. .|.+|++...
T Consensus 364 ---~~~V~~l~~spdg~~l~S~s~D~----tvriWdv~~~ 396 (420)
T 4gga_A 364 ---TSRVLSLTMSPDGATVASAAADE----TLRLWRCFEL 396 (420)
T ss_dssp ---SSCEEEEEECTTSSCEEEEETTT----EEEEECCSCS
T ss_pred ---CCCEEEEEEcCCCCEEEEEecCC----eEEEEECCCC
Confidence 12223578999998777544433 4889987543
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.27 E-value=7.1e-10 Score=119.67 Aligned_cols=195 Identities=10% Similarity=0.031 Sum_probs=119.8
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcC--CCceeecccCCCccccccccceEEecCCcEEEEEecCCC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAE--TGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSR 109 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~--~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~ 109 (706)
.+..++|||||++|+++... + ..|.++++. +++..+..... .....+..+.|+|||++|++...
T Consensus 104 ~v~~~~~s~d~~~l~~~~~~-------d--g~v~iwd~~~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~~~~~--- 169 (450)
T 2vdu_B 104 YIRNLRLTSDESRLIACADS-------D--KSLLVFDVDKTSKNVLKLRKRF--CFSKRPNAISIAEDDTTVIIADK--- 169 (450)
T ss_dssp CEEEEEECTTSSEEEEEEGG-------G--TEEEEEEECSSSSSCEEEEEEE--ECSSCEEEEEECTTSSEEEEEET---
T ss_pred ceEEEEEcCCCCEEEEEECC-------C--CeEEEEECcCCCCceeeeeecc--cCCCCceEEEEcCCCCEEEEEeC---
Confidence 47789999999998665532 3 345555655 66544432110 00112678999999999887642
Q ss_pred CCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCCce-----ecCCC-ceEeeeee
Q 005240 110 RDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAK-----DFGTP-AVYTAVEP 182 (706)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~~-----~lt~~-~~~~~~~~ 182 (706)
.+.++.+++ +++.. .+... ..+..++|
T Consensus 170 ----------------------------------------------~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 203 (450)
T 2vdu_B 170 ----------------------------------------------FGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHL 203 (450)
T ss_dssp ----------------------------------------------TSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEE
T ss_pred ----------------------------------------------CCcEEEEecCCcccccccceeeecccCceEEEEE
Confidence 157888888 44332 22222 57889999
Q ss_pred CCC---CcEEEEEeeccCcccccccccccceEEEEecCCCe-eEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEE
Q 005240 183 SPD---QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL-VRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLY 258 (706)
Q Consensus 183 SpD---G~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~ 258 (706)
+|| |++|+..+.. ..|.+|++.+++ +..+..... ..+..+.|+ |++. |+
T Consensus 204 sp~~~~~~~l~s~~~d-------------~~i~vwd~~~~~~~~~~~~~h~------------~~v~~~~~s-d~~~-l~ 256 (450)
T 2vdu_B 204 IKDSDGHQFIITSDRD-------------EHIKISHYPQCFIVDKWLFGHK------------HFVSSICCG-KDYL-LL 256 (450)
T ss_dssp EECTTSCEEEEEEETT-------------SCEEEEEESCTTCEEEECCCCS------------SCEEEEEEC-STTE-EE
T ss_pred cCCCCCCcEEEEEcCC-------------CcEEEEECCCCceeeeeecCCC------------CceEEEEEC-CCCE-EE
Confidence 999 8888765543 379999998554 333221110 224578999 8886 55
Q ss_pred EEEeccCCCCccccCccceeeeecCCCCCCCCceE-Eee-------------------------cccccccceecCCCce
Q 005240 259 WVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEI-LHK-------------------------LDLRFRSVSWCDDSLA 312 (706)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~-l~~-------------------------~~~~~~~~~wspDg~~ 312 (706)
... . ...|.+||+ .+++... +.. ....+..+.|+||++.
T Consensus 257 s~~-~-----------d~~v~vwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 321 (450)
T 2vdu_B 257 SAG-G-----------DDKIFAWDW---KTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPF 321 (450)
T ss_dssp EEE-S-----------SSEEEEEET---TTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSE
T ss_pred EEe-C-----------CCeEEEEEC---CCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCE
Confidence 332 1 125888888 5555433 321 1234667899999999
Q ss_pred EEEEeeccccceEEEEE
Q 005240 313 LVNETWYKTSQTRTWLV 329 (706)
Q Consensus 313 l~~~~~~~~~~~~l~~~ 329 (706)
|++... .++...||.+
T Consensus 322 l~~~~~-~d~~i~iw~~ 337 (450)
T 2vdu_B 322 VAFFVE-ATKCIIILEM 337 (450)
T ss_dssp EEEEET-TCSEEEEEEE
T ss_pred EEEEEC-CCCeEEEEEe
Confidence 887652 2344455555
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.27 E-value=5.9e-10 Score=116.08 Aligned_cols=145 Identities=13% Similarity=0.156 Sum_probs=90.4
Q ss_pred cccceeeCCC---CCeEEEEeeccccccccCCceeEEEEEcCCCce-eecccCCCccccccccceEEecC----CcEEEE
Q 005240 32 KINFVSWSPD---GKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-KPLFESPDICLNAVFGSFVWVNN----STLLIF 103 (706)
Q Consensus 32 ~~~~~~~SPD---G~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~-~~lt~~~~~~~~~~~~~~~wSpD----g~~l~~ 103 (706)
.+..++|||+ +..++++... + ..|.++++.+++. +.+...........+..+.|+|+ |++|+.
T Consensus 20 ~v~~i~~~p~~~~~~~~~~~~~~-------~--~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~ 90 (366)
T 3k26_A 20 PLFGVQFNWHSKEGDPLVFATVG-------S--NRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAV 90 (366)
T ss_dssp CEEEEEECTTCCTTSCEEEEEEE-------T--TEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEE
T ss_pred ceEEEEEecccCCCCceEEEECC-------C--CEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEE
Confidence 5788999985 6655555431 2 3677788776543 33322111111123678899999 667776
Q ss_pred EecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCCc-eecCCC-ceEeee
Q 005240 104 TIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTA-KDFGTP-AVYTAV 180 (706)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~-~~lt~~-~~~~~~ 180 (706)
... .+.|.++++ +++. ..+... ..+..+
T Consensus 91 ~~~-------------------------------------------------dg~i~v~d~~~~~~~~~~~~~~~~i~~~ 121 (366)
T 3k26_A 91 AGS-------------------------------------------------RGIIRIINPITMQCIKHYVGHGNAINEL 121 (366)
T ss_dssp EET-------------------------------------------------TCEEEEECTTTCCEEEEEESCCSCEEEE
T ss_pred ecC-------------------------------------------------CCEEEEEEchhceEeeeecCCCCcEEEE
Confidence 542 157888888 4543 344433 678999
Q ss_pred eeCC-CCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccC-CCCCCCCcccCccCCCCcceeeecCCCceEE
Q 005240 181 EPSP-DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDL-PPAEDIPVCYNSVREGMRSISWRADKPSTLY 258 (706)
Q Consensus 181 ~~Sp-DG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~-~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~ 258 (706)
+|+| +++.|+..+.. ..|.+|++..++....... .... ..+..+.|+|+++. |+
T Consensus 122 ~~~~~~~~~l~s~~~d-------------g~i~iwd~~~~~~~~~~~~~~~~~----------~~v~~~~~~~~~~~-l~ 177 (366)
T 3k26_A 122 KFHPRDPNLLLSVSKD-------------HALRLWNIQTDTLVAIFGGVEGHR----------DEVLSADYDLLGEK-IM 177 (366)
T ss_dssp EECSSCTTEEEEEETT-------------SCEEEEETTTTEEEEEECSTTSCS----------SCEEEEEECTTSSE-EE
T ss_pred EECCCCCCEEEEEeCC-------------CeEEEEEeecCeEEEEeccccccc----------CceeEEEECCCCCE-EE
Confidence 9999 88888765543 3799999986654443211 1111 22457899999986 54
|
| >3gff_A IROE-like serine hydrolase; NP_718593.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.12A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.1e-11 Score=126.69 Aligned_cols=190 Identities=17% Similarity=0.176 Sum_probs=119.1
Q ss_pred CceEEEEEEcc-CCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHH-----
Q 005240 480 LQKEMIKYQRK-DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA----- 553 (706)
Q Consensus 480 ~~~~~~~~~~~-dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----- 553 (706)
.+.+.+++.+. -|.+...++|+|+++++. ..+||+|+++||... +.. .......++.
T Consensus 10 ~~v~~~~~~S~~l~~~r~~~VylP~~y~~~-~~~yPVlylldG~~~---------------f~~-~~~~~~~l~~~~~~~ 72 (331)
T 3gff_A 10 VEYQSKRLESRLLKETREYVIALPEGYAQS-LEAYPVVYLLDGEDQ---------------FDH-MASLLQFLSQGTMPQ 72 (331)
T ss_dssp -CEEEEEEEETTTTEEEEEEEECCTTGGGS-CCCEEEEEESSHHHH---------------HHH-HHHHHHHHTCSSSCS
T ss_pred ceEEEEEEEecCCCCeEEEEEEeCCCCCCC-CCCccEEEEecChhh---------------hHH-HHHHHHHHHhhhhcC
Confidence 45677778775 578999999999998753 236999999998410 100 0012233432
Q ss_pred -CCeEEEEcCCCC-------c----CCCCC----CC----CchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHH
Q 005240 554 -RRFAVLAGPSIP-------I----IGEGD----KL----PNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGA 613 (706)
Q Consensus 554 -~G~~v~~~~~~~-------~----~g~g~----~~----~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG 613 (706)
.+++|+.++... . ...|. .+ ....+...+.+ .++.++.++..+++.| +|+|+||||
T Consensus 73 ~~~~IvV~i~~~~R~~dytp~~~~~~~~G~~~~~~~~~~g~~~~~~~~l~~---el~p~i~~~~~~~~~r-~i~G~S~GG 148 (331)
T 3gff_A 73 IPKVIIVGIHNTNRMRDYTPTHTLVLPSGNKGNPQYQHTGGAGRFLDFIEK---ELAPSIESQLRTNGIN-VLVGHSFGG 148 (331)
T ss_dssp SCCCEEEEECCSSHHHHSCSSCCSBCTTSSBCCGGGGGCCCHHHHHHHHHH---THHHHHHHHSCEEEEE-EEEEETHHH
T ss_pred CCCEEEEEECCCCcccccCCCccccccccccccccCCCCCcHHHHHHHHHH---HHHHHHHHHCCCCCCe-EEEEECHHH
Confidence 357777643310 0 00010 00 11222222223 3455666666677655 899999999
Q ss_pred HHHHHHHHhCCCceeEEEeccCCCCCCCC------------------C-------ccc------------hHHHHHHHHH
Q 005240 614 FMTAHLLAHAPHLFCCGIARSGSYNKTLT------------------P-------FGF------------QAERFFDALK 656 (706)
Q Consensus 614 ~~a~~~~~~~p~~~~a~v~~~~~~d~~~~------------------~-------~~~------------~~~~~~~~l~ 656 (706)
++|++++.++|++|+++++.+|.+.+... + ... ...+|+++|+
T Consensus 149 ~~al~~~~~~p~~F~~~~~~S~~~w~~~~~~~~~~~~~~~~~~~~~~~l~l~~G~~d~~~~~~~~~~~~~~~~~l~~~Lk 228 (331)
T 3gff_A 149 LVAMEALRTDRPLFSAYLALDTSLWFDSPHYLTLLEERVVKGDFKQKQLFMAIANNPLSPGFGVSSYHKDLNLAFADKLT 228 (331)
T ss_dssp HHHHHHHHTTCSSCSEEEEESCCTTTTTTHHHHHHHHHHHHCCCSSEEEEEEECCCSEETTTEECCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCchhhheeeEeCchhcCChHHHHHHHHHHhhcccCCCCeEEEEeCCCCCCCccchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998743210 0 001 1248899999
Q ss_pred hC---CCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHH
Q 005240 657 GH---GALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKY 694 (706)
Q Consensus 657 ~~---~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~~~~ 694 (706)
.. |+++++.+|||++|.... .......++||-..
T Consensus 229 ~~~~~g~~~~~~~~pg~~H~sv~----~~~~~~~l~~lf~~ 265 (331)
T 3gff_A 229 KLAPKGLGFMAKYYPEETHQSVS----HIGLYDGIRHLFKD 265 (331)
T ss_dssp HHCCTTEEEEEEECTTCCTTTHH----HHHHHHHHHHHHGG
T ss_pred hccCCCceEEEEECCCCCccccH----HHHHHHHHHHHHhh
Confidence 86 778999999999997543 34445555555443
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.27 E-value=2.3e-10 Score=122.76 Aligned_cols=159 Identities=8% Similarity=0.102 Sum_probs=94.7
Q ss_pred ceEEEEccCCCceecCCC------ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCee--------E
Q 005240 157 AQLVLGSLDGTAKDFGTP------AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV--------R 222 (706)
Q Consensus 157 ~~l~~~~l~g~~~~lt~~------~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--------~ 222 (706)
+.+.+++.++....+. . ..+.+++|||||++|+..+.+ ..|.+|++.++.. .
T Consensus 107 g~V~iwd~~~~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~D-------------GtVkIWd~~~~~l~~~~~i~l~ 172 (588)
T 2j04_A 107 GNVSVFKDNKMLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNED-------------GELQFFSIRKNSENTPEFYFES 172 (588)
T ss_dssp SCEEEEETTEEEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETT-------------SEEEEEECCCCTTTCCCCEEEE
T ss_pred CcEEEEeCCceeeecc-CCCccccccEEEEEEcCCCCEEEEEcCC-------------CEEEEEECCCCccccccceeee
Confidence 4455556544333333 3 148899999999999877654 3799999997642 3
Q ss_pred EcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCce----EEe-ec
Q 005240 223 ELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPE----ILH-KL 297 (706)
Q Consensus 223 ~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~----~l~-~~ 297 (706)
.+........ ..+..++||||| . ++ .. . + ..+++|++ +++... .|. .+
T Consensus 173 ti~~~~~gh~---------~~V~sVawSPdg-L-aa-ss-~---D--------~tVrlWd~---~~~~~~~~~~tL~~~h 225 (588)
T 2j04_A 173 SIRLSDAGSK---------DWVTHIVWYEDV-L-VA-AL-S---N--------NSVFSMTV---SASSHQPVSRMIQNAS 225 (588)
T ss_dssp EEECSCTTCC---------CCEEEEEEETTE-E-EE-EE-T---T--------CCEEEECC---CSSSSCCCEEEEECCC
T ss_pred eeeccccccc---------ccEEEEEEcCCc-E-EE-Ee-C---C--------CeEEEEEC---CCCccccceeeecccc
Confidence 3322111110 225588999999 2 32 21 1 1 24788888 555532 353 34
Q ss_pred ccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEe--ccCCCEEEEee
Q 005240 298 DLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTR--TSTGTNVIAKI 371 (706)
Q Consensus 298 ~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--s~dg~~l~~~~ 371 (706)
...+..++|+ |+.|+.+. + ..|.++|+.++ +...+..+....+ ..+.+ +|||..|+...
T Consensus 226 ~~~V~svaFs--g~~LASa~---~--~tIkLWd~~~~--~~~~~~~gh~~~V------~~va~~~s~d~~~La~a~ 286 (588)
T 2j04_A 226 RRKITDLKIV--DYKVVLTC---P--GYVHKIDLKNY--SISSLKTGSLENF------HIIPLNHEKESTILLMSN 286 (588)
T ss_dssp SSCCCCEEEE--TTEEEEEC---S--SEEEEEETTTT--EEEEEECSCCSCC------CEEEETTCSSCEEEEECS
T ss_pred cCcEEEEEEE--CCEEEEEe---C--CeEEEEECCCC--eEEEEEcCCCceE------EEEEeeeCCCCCEEEEEc
Confidence 5789999999 57777654 1 35777887773 2222221222222 23678 99997776654
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.26 E-value=2.7e-09 Score=112.93 Aligned_cols=200 Identities=17% Similarity=0.170 Sum_probs=125.0
Q ss_pred ccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCC
Q 005240 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDP 112 (706)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~ 112 (706)
+..+.|||||++||.... ...|.++|+++++.......... .+..+.|+|||++|+..+.+
T Consensus 126 v~~v~~s~dg~~l~s~~~----------d~~i~iwd~~~~~~~~~~~~h~~----~v~~~~~~p~~~~l~s~s~d----- 186 (393)
T 1erj_A 126 IRSVCFSPDGKFLATGAE----------DRLIRIWDIENRKIVMILQGHEQ----DIYSLDYFPSGDKLVSGSGD----- 186 (393)
T ss_dssp EEEEEECTTSSEEEEEET----------TSCEEEEETTTTEEEEEECCCSS----CEEEEEECTTSSEEEEEETT-----
T ss_pred EEEEEECCCCCEEEEEcC----------CCeEEEEECCCCcEEEEEccCCC----CEEEEEEcCCCCEEEEecCC-----
Confidence 668899999999987642 25778889888876554432221 27789999999988876421
Q ss_pred CCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCCce-ecCCCceEeeeeeCC-CCcEE
Q 005240 113 PKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAK-DFGTPAVYTAVEPSP-DQKYV 189 (706)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~~-~lt~~~~~~~~~~Sp-DG~~i 189 (706)
+.|.++|+ +++.. .+.....+..++|+| ||++|
T Consensus 187 --------------------------------------------~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 222 (393)
T 1erj_A 187 --------------------------------------------RTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYI 222 (393)
T ss_dssp --------------------------------------------SEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEE
T ss_pred --------------------------------------------CcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCCEE
Confidence 56777788 55332 333335678899999 88888
Q ss_pred EEEeeccCcccccccccccceEEEEecCCCee-EEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCC
Q 005240 190 LITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDA 268 (706)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~ 268 (706)
+..+.. ..|.+||+.++.. ..+....... ......+..+.|+|||+. |+.. ..+
T Consensus 223 ~~~s~d-------------~~v~iwd~~~~~~~~~~~~~~~~~------~~h~~~v~~v~~~~~g~~-l~s~-s~d---- 277 (393)
T 1erj_A 223 AAGSLD-------------RAVRVWDSETGFLVERLDSENESG------TGHKDSVYSVVFTRDGQS-VVSG-SLD---- 277 (393)
T ss_dssp EEEETT-------------SCEEEEETTTCCEEEEEC------------CCCSSCEEEEEECTTSSE-EEEE-ETT----
T ss_pred EEEcCC-------------CcEEEEECCCCcEEEeecccccCC------CCCCCCEEEEEECCCCCE-EEEE-eCC----
Confidence 766543 3789999986543 3332111000 000022457899999986 5422 111
Q ss_pred ccccCccceeeeecCCCCCCCC-------------ceEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCCC
Q 005240 269 NVEVSPRDIIYTQPAEPAEGEK-------------PEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK 334 (706)
Q Consensus 269 ~~~~~~~~~l~~~d~~~~~~~~-------------~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~ 334 (706)
..|.+||+. ... ...+..+...+..+.|+|+++.|+..+. ...|.++|+.++
T Consensus 278 -------~~v~~wd~~---~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~----D~~v~iwd~~~~ 342 (393)
T 1erj_A 278 -------RSVKLWNLQ---NANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSK----DRGVLFWDKKSG 342 (393)
T ss_dssp -------SEEEEEEC------------------CEEEEEECCSSCEEEEEECGGGCEEEEEET----TSEEEEEETTTC
T ss_pred -------CEEEEEECC---CCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeC----CCeEEEEECCCC
Confidence 246777762 211 1123344566788999999998887652 234777787774
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.26 E-value=6.1e-10 Score=118.55 Aligned_cols=215 Identities=11% Similarity=0.068 Sum_probs=132.7
Q ss_pred ceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccc
Q 005240 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (706)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 85 (706)
.|.|++... .....+.. ....+..+.|+|||+.|+.... ...|.++++.+++..+.........
T Consensus 131 ~i~i~~~~~----~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~----------d~~i~iwd~~~~~~~~~~~~~~~~~ 194 (425)
T 1r5m_A 131 ELRLWNKTG----ALLNVLNF--HRAPIVSVKWNKDGTHIISMDV----------ENVTILWNVISGTVMQHFELKETGG 194 (425)
T ss_dssp CEEEEETTS----CEEEEECC--CCSCEEEEEECTTSSEEEEEET----------TCCEEEEETTTTEEEEEECCC----
T ss_pred eEEEEeCCC----CeeeeccC--CCccEEEEEECCCCCEEEEEec----------CCeEEEEECCCCcEEEEeeccccCc
Confidence 467777322 34444432 2335889999999999987642 3568888888776555432222100
Q ss_pred -----------cccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhc
Q 005240 86 -----------NAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYY 154 (706)
Q Consensus 86 -----------~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 154 (706)
...+..+.|+|++.. +...
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------------------------------------------------- 224 (425)
T 1r5m_A 195 SSINAENHSGDGSLGVDVEWVDDDKF-VIPG------------------------------------------------- 224 (425)
T ss_dssp -----------CCCBSCCEEEETTEE-EEEC-------------------------------------------------
T ss_pred cceeeccccCCcceeeEEEEcCCCEE-EEEc-------------------------------------------------
Confidence 000567889998763 4332
Q ss_pred ccceEEEEcc-CCC-ceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCee-EEcccCCCC
Q 005240 155 TTAQLVLGSL-DGT-AKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPA 230 (706)
Q Consensus 155 ~~~~l~~~~l-~g~-~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~l~~~~~~ 230 (706)
..+.|+++++ +++ ...+... ..+..++|+|||+.|+..... ..|.+|++..++. ..+....
T Consensus 225 ~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-------------~~i~i~d~~~~~~~~~~~~~~-- 289 (425)
T 1r5m_A 225 PKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDD-------------GTLRIWHGGNGNSQNCFYGHS-- 289 (425)
T ss_dssp GGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETT-------------SCEEEECSSSBSCSEEECCCS--
T ss_pred CCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCC-------------CEEEEEECCCCccceEecCCC--
Confidence 1267888898 443 3344433 678899999999988766543 3799999986543 3332111
Q ss_pred CCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceE-EeecccccccceecCC
Q 005240 231 EDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEI-LHKLDLRFRSVSWCDD 309 (706)
Q Consensus 231 ~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~-l~~~~~~~~~~~wspD 309 (706)
..+..+.|+|++ . |+... . ...|.++|+ ..++... +......+..+.|+||
T Consensus 290 -----------~~i~~~~~~~~~-~-l~~~~-~-----------d~~i~i~d~---~~~~~~~~~~~~~~~i~~~~~s~~ 341 (425)
T 1r5m_A 290 -----------QSIVSASWVGDD-K-VISCS-M-----------DGSVRLWSL---KQNTLLALSIVDGVPIFAGRISQD 341 (425)
T ss_dssp -----------SCEEEEEEETTT-E-EEEEE-T-----------TSEEEEEET---TTTEEEEEEECTTCCEEEEEECTT
T ss_pred -----------ccEEEEEECCCC-E-EEEEe-C-----------CCcEEEEEC---CCCcEeEecccCCccEEEEEEcCC
Confidence 124478999999 4 55332 1 125888888 4444433 3344677889999999
Q ss_pred CceEEEEeeccccceEEEEEcCCC
Q 005240 310 SLALVNETWYKTSQTRTWLVCPGS 333 (706)
Q Consensus 310 g~~l~~~~~~~~~~~~l~~~d~~~ 333 (706)
++.|+....+ + .|.++|+.+
T Consensus 342 ~~~l~~~~~d--g--~i~i~~~~~ 361 (425)
T 1r5m_A 342 GQKYAVAFMD--G--QVNVYDLKK 361 (425)
T ss_dssp SSEEEEEETT--S--CEEEEECHH
T ss_pred CCEEEEEECC--C--eEEEEECCC
Confidence 9988876522 3 355555554
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.26 E-value=2.7e-09 Score=112.31 Aligned_cols=255 Identities=13% Similarity=0.074 Sum_probs=148.7
Q ss_pred cceeEeecCCCCCCCCeeeeecC-CCCCcccceeeCC-CCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCC
Q 005240 5 TGIGIHRLLPDDSLGPEKEVHGY-PDGAKINFVSWSP-DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD 82 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~i~~~-~~~~~~~~~~~SP-DG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~ 82 (706)
..|.|+++.. ++...+..+ .....+..+.||| |++.|+... ....|.++|+.+...+.+.....
T Consensus 96 g~i~iwd~~~----~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~----------~d~~i~iwd~~~~~~~~~~~~~~ 161 (383)
T 3ei3_B 96 GDIILWDYDV----QNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSS----------IRGATTLRDFSGSVIQVFAKTDS 161 (383)
T ss_dssp SCEEEEETTS----TTCEEEECCCSTTCBEEEEEEETTEEEEEEEEE----------TTTEEEEEETTSCEEEEEECCCC
T ss_pred CeEEEEeCCC----cccceeeecCCcCCceeEEEeCCCCCCEEEEEe----------CCCEEEEEECCCCceEEEeccCC
Confidence 3688899876 555554432 2334688999999 667776653 23578888888766665543321
Q ss_pred ccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEE
Q 005240 83 ICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLG 162 (706)
Q Consensus 83 ~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~ 162 (706)
....+..+.|+||++.|+.... .+.|.++
T Consensus 162 --~~~~v~~~~~~~~~~~l~~~~~-------------------------------------------------d~~i~i~ 190 (383)
T 3ei3_B 162 --WDYWYCCVDVSVSRQMLATGDS-------------------------------------------------TGRLLLL 190 (383)
T ss_dssp --SSCCEEEEEEETTTTEEEEEET-------------------------------------------------TSEEEEE
T ss_pred --CCCCeEEEEECCCCCEEEEECC-------------------------------------------------CCCEEEE
Confidence 1123678999999998887642 1578888
Q ss_pred ccCC-CceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCC----CeeEEcccCCCCCCCCcc
Q 005240 163 SLDG-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG----KLVRELCDLPPAEDIPVC 236 (706)
Q Consensus 163 ~l~g-~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~l~~~~~~~~~p~~ 236 (706)
++++ ....+... ..+..++|+|++++++++.... ..|.+||+.. +.........
T Consensus 191 d~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d------------~~i~iwd~~~~~~~~~~~~~~~~~-------- 250 (383)
T 3ei3_B 191 GLDGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVD------------ATVKLWDLRNIKDKNSYIAEMPHE-------- 250 (383)
T ss_dssp ETTSCEEEEEECSSSCEEEEEECSSCTTEEEEEETT------------SEEEEEEGGGCCSTTCEEEEEECS--------
T ss_pred ECCCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCC------------CEEEEEeCCCCCcccceEEEecCC--------
Confidence 8876 44445444 6789999999999544444332 3799999985 3222222211
Q ss_pred cCccCCCCcceeeec-CCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecc------cccccceecCC
Q 005240 237 YNSVREGMRSISWRA-DKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLD------LRFRSVSWCDD 309 (706)
Q Consensus 237 ~~~~~~g~~~~~~sp-dg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~------~~~~~~~wspD 309 (706)
..+..+.|+| |++. |+... . .+.|.+||+. .+.....+.... .......|+|+
T Consensus 251 -----~~v~~~~~s~~~~~~-l~~~~-~-----------d~~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 310 (383)
T 3ei3_B 251 -----KPVNAAYFNPTDSTK-LLTTD-Q-----------RNEIRVYSSY--DWSKPDQIIIHPHRQFQHLTPIKATWHPM 310 (383)
T ss_dssp -----SCEEEEEECTTTSCE-EEEEE-S-----------SSEEEEEETT--BTTSCSEEEECCBCCCTTSCCCCCEECSS
T ss_pred -----CceEEEEEcCCCCCE-EEEEc-C-----------CCcEEEEECC--CCccccccccccccccccccceEEeccCC
Confidence 2245789999 9986 55332 1 1257888883 222334444221 11122456666
Q ss_pred CceEEEEeec-----cccceEEEEEcCCCCCCCceeeecCcccccccCCCCC-ceEeccCCCEEEEee
Q 005240 310 SLALVNETWY-----KTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSP-MMTRTSTGTNVIAKI 371 (706)
Q Consensus 310 g~~l~~~~~~-----~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~ 371 (706)
+..++..... .+....|.++|+.+++ ......... ..+.. .+.|+|||++|+...
T Consensus 311 ~~~~~~~~s~dg~~s~s~d~~i~iwd~~~~~--~~~~l~~~~-----~~~~~~~~~~s~~g~~l~s~s 371 (383)
T 3ei3_B 311 YDLIVAGRYPDDQLLLNDKRTIDIYDANSGG--LVHQLRDPN-----AAGIISLNKFSPTGDVLASGM 371 (383)
T ss_dssp SSEEEEECBCCTTTCTTCCCCEEEEETTTCC--EEEEECBTT-----BCSCCCEEEECTTSSEEEEEE
T ss_pred CCceEEEecCCcccccCCCCeEEEEecCCCc--eeeeecCCC-----CCceEEEEEEecCccEEEEec
Confidence 6555433210 0123457777877742 222222110 01112 247999999887653
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.26 E-value=3.9e-09 Score=109.92 Aligned_cols=243 Identities=9% Similarity=0.042 Sum_probs=142.0
Q ss_pred ceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCc-------eeecc
Q 005240 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-------AKPLF 78 (706)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~-------~~~lt 78 (706)
.|.|+++.. ++.......+ ...+...+|||||+.||.... ++ .+.++++.... ...+.
T Consensus 87 ~v~vWd~~~----~~~~~~~~~~-~~~v~~~~~sp~g~~lasg~~--------d~--~i~v~~~~~~~~~~~~~~~~~~~ 151 (354)
T 2pbi_B 87 KVIVWDSFT----TNKEHAVTMP-CTWVMACAYAPSGCAIACGGL--------DN--KCSVYPLTFDKNENMAAKKKSVA 151 (354)
T ss_dssp EEEEEETTT----CCEEEEEECS-SSCCCEEEECTTSSEEEEEST--------TS--EEEEEECCCCTTCCSGGGCEEEE
T ss_pred eEEEEECCC----CCcceEEecC-CCCEEEEEECCCCCEEEEeeC--------CC--CEEEEEEeccccccccccceeee
Confidence 467777765 5443332222 235788999999999987642 33 44445543321 12222
Q ss_pred cCCCccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccce
Q 005240 79 ESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQ 158 (706)
Q Consensus 79 ~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 158 (706)
.+.. .+..+.|+|+++.|+..+.+ +.
T Consensus 152 ~h~~-----~v~~~~~~~~~~~l~t~s~D-------------------------------------------------~~ 177 (354)
T 2pbi_B 152 MHTN-----YLSACSFTNSDMQILTASGD-------------------------------------------------GT 177 (354)
T ss_dssp ECSS-----CEEEEEECSSSSEEEEEETT-------------------------------------------------SE
T ss_pred ccCC-----cEEEEEEeCCCCEEEEEeCC-------------------------------------------------Cc
Confidence 1222 26688999999988866421 56
Q ss_pred EEEEcc-CCCc-eecCCC-ceEeeeeeCC--CCcEEEEEeeccCcccccccccccceEEEEecCCCeeE-EcccCCCCCC
Q 005240 159 LVLGSL-DGTA-KDFGTP-AVYTAVEPSP--DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR-ELCDLPPAED 232 (706)
Q Consensus 159 l~~~~l-~g~~-~~lt~~-~~~~~~~~Sp--DG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~~~~ 232 (706)
|.++|+ +++. ..+... ..+..+.|+| +|+.|+..+.+ ..|.+||+.+++.. .+..+.
T Consensus 178 v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~D-------------g~v~~wd~~~~~~~~~~~~h~---- 240 (354)
T 2pbi_B 178 CALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCD-------------KKAMVWDMRSGQCVQAFETHE---- 240 (354)
T ss_dssp EEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETT-------------SCEEEEETTTCCEEEEECCCS----
T ss_pred EEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCC-------------CeEEEEECCCCcEEEEecCCC----
Confidence 778888 5543 344433 5677788877 56777655443 37999999865543 332221
Q ss_pred CCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeec---ccccccceecCC
Q 005240 233 IPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL---DLRFRSVSWCDD 309 (706)
Q Consensus 233 ~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~---~~~~~~~~wspD 309 (706)
..+..++|+|+++. |+... .+ ..|.+||+ ..++...+... ...+..+.|+||
T Consensus 241 ---------~~v~~v~~~p~~~~-l~s~s-~D-----------~~v~lwd~---~~~~~~~~~~~~~~~~~~~~~~~s~~ 295 (354)
T 2pbi_B 241 ---------SDVNSVRYYPSGDA-FASGS-DD-----------ATCRLYDL---RADREVAIYSKESIIFGASSVDFSLS 295 (354)
T ss_dssp ---------SCEEEEEECTTSSE-EEEEE-TT-----------SCEEEEET---TTTEEEEEECCTTCCSCEEEEEECTT
T ss_pred ---------CCeEEEEEeCCCCE-EEEEe-CC-----------CeEEEEEC---CCCcEEEEEcCCCcccceeEEEEeCC
Confidence 12457899999985 54321 11 24778887 33332222222 224567889999
Q ss_pred CceEEEEeeccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEee
Q 005240 310 SLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 310 g~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 371 (706)
|+.|+....+ + .|.++|+.++ +.......... ....+.|+|||++|+...
T Consensus 296 g~~l~~g~~d--~--~i~vwd~~~~--~~~~~l~~h~~------~v~~l~~spdg~~l~sgs 345 (354)
T 2pbi_B 296 GRLLFAGYND--Y--TINVWDVLKG--SRVSILFGHEN------RVSTLRVSPDGTAFCSGS 345 (354)
T ss_dssp SSEEEEEETT--S--CEEEEETTTC--SEEEEECCCSS------CEEEEEECTTSSCEEEEE
T ss_pred CCEEEEEECC--C--cEEEEECCCC--ceEEEEECCCC------cEEEEEECCCCCEEEEEc
Confidence 9988876522 2 3666677663 22222221111 122478999999887764
|
| >1imj_A CIB, CCG1-interacting factor B; alpha/beta hydrolase, CCG1 interactor; 2.20A {Homo sapiens} SCOP: c.69.1.23 | Back alignment and structure |
|---|
Probab=99.26 E-value=3.1e-11 Score=115.33 Aligned_cols=172 Identities=12% Similarity=0.034 Sum_probs=114.0
Q ss_pred CCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCch--HHHHHHHCCeEEEEcCCCCcCC
Q 005240 491 DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPT--SSLIFLARRFAVLAGPSIPIIG 568 (706)
Q Consensus 491 dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~G~~v~~~~~~~~~g 568 (706)
+|..++++.+.|++ + .+.|+||++||.+.. ...+ .. .+..|+++||.|+.++.+|
T Consensus 15 ~g~~l~~~~~~p~~---~--~~~~~vv~~hG~~~~-----------~~~~----~~~~~~~~l~~~G~~v~~~d~~g--- 71 (210)
T 1imj_A 15 QGQALFFREALPGS---G--QARFSVLLLHGIRFS-----------SETW----QNLGTLHRLAQAGYRAVAIDLPG--- 71 (210)
T ss_dssp TTEEECEEEEECSS---S--CCSCEEEECCCTTCC-----------HHHH----HHHTHHHHHHHTTCEEEEECCTT---
T ss_pred CCeEEEEEEeCCCC---C--CCCceEEEECCCCCc-----------ccee----ecchhHHHHHHCCCeEEEecCCC---
Confidence 78999999999865 1 135899999997421 0111 12 3667888999999977653
Q ss_pred CCCCCCch--hhHHHHH--HHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCCCCC---
Q 005240 569 EGDKLPND--RFVEQLV--SSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTL--- 641 (706)
Q Consensus 569 ~g~~~~~~--~~~~~~~--~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d~~~--- 641 (706)
+|.+.... ....... +|+..+++.+ +.++++++|+|+||++++.++.++|++++++++.+|......
T Consensus 72 ~g~s~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~G~S~Gg~~a~~~a~~~~~~v~~~v~~~~~~~~~~~~~ 145 (210)
T 1imj_A 72 LGHSKEAAAPAPIGELAPGSFLAAVVDAL------ELGPPVVISPSLSGMYSLPFLTAPGSQLPGFVPVAPICTDKINAA 145 (210)
T ss_dssp SGGGTTSCCSSCTTSCCCTHHHHHHHHHH------TCCSCEEEEEGGGHHHHHHHHTSTTCCCSEEEEESCSCGGGSCHH
T ss_pred CCCCCCCCCcchhhhcchHHHHHHHHHHh------CCCCeEEEEECchHHHHHHHHHhCccccceEEEeCCCccccccch
Confidence 33222111 1111112 4555555544 346899999999999999999999999999999998764321
Q ss_pred ------CCcc-------chHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 005240 642 ------TPFG-------FQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQK 693 (706)
Q Consensus 642 ------~~~~-------~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~~~ 693 (706)
.|.. .-..+..+.+ +.-...+++++++++|.+.. .....+.+.+.+||++
T Consensus 146 ~~~~~~~p~l~i~g~~D~~~~~~~~~~-~~~~~~~~~~~~~~~H~~~~-~~~~~~~~~i~~fl~~ 208 (210)
T 1imj_A 146 NYASVKTPALIVYGDQDPMGQTSFEHL-KQLPNHRVLIMKGAGHPCYL-DKPEEWHTGLLDFLQG 208 (210)
T ss_dssp HHHTCCSCEEEEEETTCHHHHHHHHHH-TTSSSEEEEEETTCCTTHHH-HCHHHHHHHHHHHHHT
T ss_pred hhhhCCCCEEEEEcCcccCCHHHHHHH-hhCCCCCEEEecCCCcchhh-cCHHHHHHHHHHHHHh
Confidence 1210 0123455566 55567899999999998642 2355677788888865
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.26 E-value=3.5e-09 Score=107.53 Aligned_cols=274 Identities=12% Similarity=0.065 Sum_probs=159.1
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~ 111 (706)
.+..+.| |||++|+.... ...|.++++++++......... ..+..+.|+||++.|+.....
T Consensus 20 ~v~~~~~-~~~~~l~s~~~----------dg~v~vw~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~~d---- 80 (313)
T 3odt_A 20 DVRDVVA-VDDSKVASVSR----------DGTVRLWSKDDQWLGTVVYTGQ----GFLNSVCYDSEKELLLFGGKD---- 80 (313)
T ss_dssp CEEEEEE-EETTEEEEEET----------TSEEEEEEESSSEEEEEEEECS----SCEEEEEEETTTTEEEEEETT----
T ss_pred CcEEEEe-cCCCEEEEEEc----------CCcEEEEECCCCEEEEEeecCC----ccEEEEEECCCCCEEEEecCC----
Confidence 5888899 99999987642 2567777877776554432221 137789999999998876431
Q ss_pred CCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CC---C-ceecCCC-ceEeeeeeCCC
Q 005240 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG---T-AKDFGTP-AVYTAVEPSPD 185 (706)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g---~-~~~lt~~-~~~~~~~~SpD 185 (706)
+.+.++++ +. + ...+... ..+..+.| +
T Consensus 81 ---------------------------------------------g~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~ 113 (313)
T 3odt_A 81 ---------------------------------------------TMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--Q 113 (313)
T ss_dssp ---------------------------------------------SCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--E
T ss_pred ---------------------------------------------CeEEEEEeeecCCCCcccchhhcccCEEEEEe--c
Confidence 34555555 22 1 2333333 56677777 6
Q ss_pred CcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeec-CCCceEEEEEecc
Q 005240 186 QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRA-DKPSTLYWVEAQD 264 (706)
Q Consensus 186 G~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~sp-dg~~~l~~~~~~~ 264 (706)
++.|+..+.. ..+.+|+ .+.....+.... .....+.|+| +++. |+... .+
T Consensus 114 ~~~l~~~~~d-------------~~i~~~d-~~~~~~~~~~~~-------------~~v~~~~~~~~~~~~-l~~~~-~d 164 (313)
T 3odt_A 114 DGVVISGSWD-------------KTAKVWK-EGSLVYNLQAHN-------------ASVWDAKVVSFSENK-FLTAS-AD 164 (313)
T ss_dssp TTEEEEEETT-------------SEEEEEE-TTEEEEEEECCS-------------SCEEEEEEEETTTTE-EEEEE-TT
T ss_pred CCEEEEEeCC-------------CCEEEEc-CCcEEEecccCC-------------CceeEEEEccCCCCE-EEEEE-CC
Confidence 7777655543 3788998 444344443322 1234678888 6664 44331 11
Q ss_pred CCCCccccCccceeeeecCCCCCCCCceEEee-cccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeec
Q 005240 265 RGDANVEVSPRDIIYTQPAEPAEGEKPEILHK-LDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFD 343 (706)
Q Consensus 265 ~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~-~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~ 343 (706)
..|.++|. ......+.. ....+..+.|+|+++ ++... ....|.++|+.++ +....+.
T Consensus 165 -----------~~i~i~d~----~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~----~dg~i~i~d~~~~--~~~~~~~ 222 (313)
T 3odt_A 165 -----------KTIKLWQN----DKVIKTFSGIHNDVVRHLAVVDDGH-FISCS----NDGLIKLVDMHTG--DVLRTYE 222 (313)
T ss_dssp -----------SCEEEEET----TEEEEEECSSCSSCEEEEEEEETTE-EEEEE----TTSEEEEEETTTC--CEEEEEE
T ss_pred -----------CCEEEEec----CceEEEEeccCcccEEEEEEcCCCe-EEEcc----CCCeEEEEECCch--hhhhhhh
Confidence 23667765 122233333 567788899999999 55543 2235778888774 3333222
Q ss_pred CcccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeeecccchhhhhhhh
Q 005240 344 RVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAV 423 (706)
Q Consensus 344 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~ 423 (706)
..... ...+.|+|+|. ++.... ...+..+|+.+++.........
T Consensus 223 ~~~~~------i~~~~~~~~~~-l~~~~~---------------------dg~v~iwd~~~~~~~~~~~~~~-------- 266 (313)
T 3odt_A 223 GHESF------VYCIKLLPNGD-IVSCGE---------------------DRTVRIWSKENGSLKQVITLPA-------- 266 (313)
T ss_dssp CCSSC------EEEEEECTTSC-EEEEET---------------------TSEEEEECTTTCCEEEEEECSS--------
T ss_pred cCCce------EEEEEEecCCC-EEEEec---------------------CCEEEEEECCCCceeEEEeccC--------
Confidence 21111 22477899994 443321 1136667877776555443322
Q ss_pred hhccCCCceecccCCCEEEEEEecCCCCcEEEEEECCCCceeE
Q 005240 424 ALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQ 466 (706)
Q Consensus 424 ~~~~~~~~~~~s~Dg~~l~~~~~~~~~p~~v~~~~~~~~~~~~ 466 (706)
.......|+||++ ++....+ ..|++|++.+++...
T Consensus 267 ---~~i~~~~~~~~~~-~~~~~~d----g~i~iw~~~~~~~~~ 301 (313)
T 3odt_A 267 ---ISIWSVDCMSNGD-IIVGSSD----NLVRIFSQEKSRWAS 301 (313)
T ss_dssp ---SCEEEEEECTTSC-EEEEETT----SCEEEEESCGGGCCC
T ss_pred ---ceEEEEEEccCCC-EEEEeCC----CcEEEEeCCCCceee
Confidence 1123578999998 4433332 359999988765433
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.25 E-value=4.2e-09 Score=107.36 Aligned_cols=245 Identities=11% Similarity=0.052 Sum_probs=145.5
Q ss_pred ceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccc
Q 005240 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (706)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 85 (706)
.|.|.++.. ++..+... .....+..+.|||||+.|+.... ...|.++|+.+++..........
T Consensus 46 ~i~iw~~~~----~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~----------d~~i~vwd~~~~~~~~~~~~~~~-- 108 (312)
T 4ery_A 46 LIKIWGAYD----GKFEKTIS-GHKLGISDVAWSSDSNLLVSASD----------DKTLKIWDVSSGKCLKTLKGHSN-- 108 (312)
T ss_dssp CEEEEETTT----CCEEEEEC-CCSSCEEEEEECTTSSEEEEEET----------TSEEEEEETTTCCEEEEEECCSS--
T ss_pred eEEEEeCCC----cccchhhc-cCCCceEEEEEcCCCCEEEEECC----------CCEEEEEECCCCcEEEEEcCCCC--
Confidence 477777765 55443321 12235888999999999988642 25788889888775543322211
Q ss_pred cccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-
Q 005240 86 NAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL- 164 (706)
Q Consensus 86 ~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l- 164 (706)
.+..+.|+|+++.|+..+.+ +.|.++|+
T Consensus 109 --~v~~~~~~~~~~~l~s~~~d-------------------------------------------------~~i~iwd~~ 137 (312)
T 4ery_A 109 --YVFCCNFNPQSNLIVSGSFD-------------------------------------------------ESVRIWDVK 137 (312)
T ss_dssp --CEEEEEECSSSSEEEEEETT-------------------------------------------------SCEEEEETT
T ss_pred --CEEEEEEcCCCCEEEEEeCC-------------------------------------------------CcEEEEECC
Confidence 26788999999988876421 56778888
Q ss_pred CCC-ceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCee-EEcccCCCCCCCCcccCccC
Q 005240 165 DGT-AKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIPVCYNSVR 241 (706)
Q Consensus 165 ~g~-~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~l~~~~~~~~~p~~~~~~~ 241 (706)
+++ ...+... ..+..+.|+|||+.|+..+.. ..|.+||+..++. +.+.....
T Consensus 138 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------------~~i~~wd~~~~~~~~~~~~~~~------------ 192 (312)
T 4ery_A 138 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-------------GLCRIWDTASGQCLKTLIDDDN------------ 192 (312)
T ss_dssp TCCEEEEECCCSSCEEEEEECTTSSEEEEEETT-------------SCEEEEETTTCCEEEEECCSSC------------
T ss_pred CCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCC-------------CcEEEEECCCCceeeEEeccCC------------
Confidence 453 3444444 678899999999988766543 3799999986543 33322211
Q ss_pred CCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceE-Eeecccc--cccceec-CCCceEEEEe
Q 005240 242 EGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEI-LHKLDLR--FRSVSWC-DDSLALVNET 317 (706)
Q Consensus 242 ~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~-l~~~~~~--~~~~~ws-pDg~~l~~~~ 317 (706)
.....+.|+|+++. |+... . .+.|.+||+ ..++... +...... .....|+ +++..|+..+
T Consensus 193 ~~~~~~~~~~~~~~-l~~~~-~-----------d~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~ 256 (312)
T 4ery_A 193 PPVSFVKFSPNGKY-ILAAT-L-----------DNTLKLWDY---SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 256 (312)
T ss_dssp CCEEEEEECTTSSE-EEEEE-T-----------TTEEEEEET---TTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECC
T ss_pred CceEEEEECCCCCE-EEEEc-C-----------CCeEEEEEC---CCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEEC
Confidence 11336799999986 54331 1 124788888 4443322 3222222 1223444 5567666543
Q ss_pred eccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEee
Q 005240 318 WYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 318 ~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 371 (706)
. ...|.++|+.++ +....+...... ...++|+|++..++...
T Consensus 257 -~---dg~i~vwd~~~~--~~~~~~~~h~~~------v~~~~~~p~~~~l~s~~ 298 (312)
T 4ery_A 257 -E---DNLVYIWNLQTK--EIVQKLQGHTDV------VISTACHPTENIIASAA 298 (312)
T ss_dssp -T---TSCEEEEETTTC--CEEEEECCCSSC------EEEEEECSSSSEEEEEE
T ss_pred -C---CCEEEEEECCCc--hhhhhhhccCCc------EEEEeecCcCCceEEEE
Confidence 2 224667777763 233322222111 12367899999877653
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=9.9e-09 Score=112.98 Aligned_cols=328 Identities=9% Similarity=-0.010 Sum_probs=179.4
Q ss_pred cceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcC--CCce-eecccCC
Q 005240 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAE--TGEA-KPLFESP 81 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~--~g~~-~~lt~~~ 81 (706)
..|.+.|+++ ++... .++.+.....+.+||||++|+.. + ....|.++|+. +++. .++..+
T Consensus 177 ~~V~viD~~t----~~v~~--~i~~g~~p~~v~~SpDGr~lyv~-~---------~dg~V~viD~~~~t~~~v~~i~~G- 239 (567)
T 1qks_A 177 GQIALIDGST----YEIKT--VLDTGYAVHISRLSASGRYLFVI-G---------RDGKVNMIDLWMKEPTTVAEIKIG- 239 (567)
T ss_dssp TEEEEEETTT----CCEEE--EEECSSCEEEEEECTTSCEEEEE-E---------TTSEEEEEETTSSSCCEEEEEECC-
T ss_pred CeEEEEECCC----CeEEE--EEeCCCCccceEECCCCCEEEEE-c---------CCCeEEEEECCCCCCcEeEEEecC-
Confidence 4677888866 54432 33456556789999999998553 3 12479999985 5443 223211
Q ss_pred CccccccccceEEe----cCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccc
Q 005240 82 DICLNAVFGSFVWV----NNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTA 157 (706)
Q Consensus 82 ~~~~~~~~~~~~wS----pDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 157 (706)
. ....+.+| |||++|++... ...
T Consensus 240 ~-----~P~~ia~s~~~~pDGk~l~v~n~------------------------------------------------~~~ 266 (567)
T 1qks_A 240 S-----EARSIETSKMEGWEDKYAIAGAY------------------------------------------------WPP 266 (567)
T ss_dssp S-----EEEEEEECCSTTCTTTEEEEEEE------------------------------------------------ETT
T ss_pred C-----CCceeEEccccCCCCCEEEEEEc------------------------------------------------cCC
Confidence 1 25678999 79999887632 114
Q ss_pred eEEEEcc-CCCce-ecCCC------------ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEE
Q 005240 158 QLVLGSL-DGTAK-DFGTP------------AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRE 223 (706)
Q Consensus 158 ~l~~~~l-~g~~~-~lt~~------------~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 223 (706)
++.++|. +.++. .+... ..+..+..|+++..+++.... ...|+++|....+...
T Consensus 267 ~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~------------~g~v~~vd~~~~~~~~ 334 (567)
T 1qks_A 267 QYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE------------TGKILLVDYTDLNNLK 334 (567)
T ss_dssp EEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT------------TTEEEEEETTCSSEEE
T ss_pred eEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecC------------CCeEEEEecCCCccce
Confidence 5666676 33332 22111 134567789998776665533 3488888887543222
Q ss_pred cccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeec-cc---
Q 005240 224 LCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL-DL--- 299 (706)
Q Consensus 224 l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~-~~--- 299 (706)
++..... .....+.|+|||+. ++... . ..+.|.++|. +++++..+... ..
T Consensus 335 v~~i~~~-----------~~~~d~~~~pdgr~-~~va~-~----------~sn~V~ViD~---~t~kl~~~i~vgg~~Ph 388 (567)
T 1qks_A 335 TTEISAE-----------RFLHDGGLDGSHRY-FITAA-N----------ARNKLVVIDT---KEGKLVAIEDTGGQTPH 388 (567)
T ss_dssp EEEEECC-----------SSEEEEEECTTSCE-EEEEE-G----------GGTEEEEEET---TTTEEEEEEECSSSSBC
T ss_pred eeeeecc-----------ccccCceECCCCCE-EEEEe-C----------CCCeEEEEEC---CCCcEEEEEeccCcCCC
Confidence 2221111 11236689999997 54332 1 1235788888 56655443332 11
Q ss_pred cccccee-cCCCceEEEEeeccccceEEEEEcCCCCCCC---ceee--ecCcccccccCCCCCceEeccCCCEEEEeeec
Q 005240 300 RFRSVSW-CDDSLALVNETWYKTSQTRTWLVCPGSKDVA---PRVL--FDRVFENVYSDPGSPMMTRTSTGTNVIAKIKK 373 (706)
Q Consensus 300 ~~~~~~w-spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~---~~~l--~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~ 373 (706)
....+.| +|++..++++... +...|.++|.++.+.. .+.+ .+.. ..+...+..+|||+++++....
T Consensus 389 pg~g~~~~~p~~g~v~~t~~~--g~~~Vsvid~~~~~~~~~~~kvv~~i~~~------g~g~~~i~~~p~~~~l~v~~~~ 460 (567)
T 1qks_A 389 PGRGANFVHPTFGPVWATSHM--GDDSVALIGTDPEGHPDNAWKILDSFPAL------GGGSLFIKTHPNSQYLYVDATL 460 (567)
T ss_dssp CTTCEEEEETTTEEEEEEEBS--SSSEEEEEECCTTTCTTTBTSEEEEEECS------CSCCCCEECCTTCSEEEEECTT
T ss_pred CccceeeECCCCCcEEEeCCC--CCCeEEEecCCCCCCccccCEEEEEEecC------CCCCEEEEeCCCCCeEEEecCC
Confidence 1123344 7887777655422 2335778887763211 1111 1111 1233456679999998886421
Q ss_pred cCCcceEEEEecCCCCCCC-CCCceeeeecCCC-----ce--eeeecccchhhhhhhhhhccCCCceecccCCCEEEEEE
Q 005240 374 ENDEQIYILLNGRGFTPEG-NIPFLDLFDINTG-----SK--ERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSK 445 (706)
Q Consensus 374 ~~~~~~~~~~~~~g~~~~~-~~~~l~~~d~~~g-----~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~ 445 (706)
.+|. ....+..+|+++. .. +.+.-.+. ..+...-.....+.|++||+++.++.
T Consensus 461 ---------------~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~G~~~~~s~ 521 (567)
T 1qks_A 461 ---------------NPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEW----AGITEGQPRVVQGEFNKDGTEVWFSV 521 (567)
T ss_dssp ---------------CSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHH----HTCCSSCCEEEEEEECTTSSEEEEEE
T ss_pred ---------------CCCcccCceEEEEECCcccccccCCCcEEeccccc----cccCCCCcceEeeeECCCCCEEEEEe
Confidence 0110 0113566776654 11 22210000 00000000012478999999999886
Q ss_pred ecCC-CCcEEEEEECCCCceeEe
Q 005240 446 ESKT-EITQYHILSWPLKKSSQI 467 (706)
Q Consensus 446 ~~~~-~p~~v~~~~~~~~~~~~l 467 (706)
.+.+ ....|.++|.++++++..
T Consensus 522 ~~~~~~~~~i~v~D~~t~~~~~~ 544 (567)
T 1qks_A 522 WNGKDQESALVVVDDKTLELKHV 544 (567)
T ss_dssp ECCTTSCCEEEEEETTTTEEEEE
T ss_pred ecCCCCCCcEEEEECCCceEEEE
Confidence 6543 567899999998876543
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.25 E-value=7.7e-09 Score=108.09 Aligned_cols=303 Identities=10% Similarity=0.010 Sum_probs=153.2
Q ss_pred eeCCCCCeEEEEeeccccccccCCce---eEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCCC
Q 005240 37 SWSPDGKRIAFSVRVDEEDNVSSCKL---RVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPP 113 (706)
Q Consensus 37 ~~SPDG~~laf~~~~~~~~~~~~~~~---~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~ 113 (706)
..+||++++ |+.+. .+.. .|+++|+++++...-..... .. .+.+||||++||+.........
T Consensus 27 ~~~~~~~~~-yv~~~-------~~~~~~~~v~v~D~~t~~~~~~i~~g~-----~p-~i~~spDg~~lyv~n~~~~~~~- 91 (373)
T 2mad_H 27 APGADGRRS-YINLP-------AHHSAIIQQWVLDAGSGSILGHVNGGF-----LP-NPVAAHSGSEFALASTSFSRIA- 91 (373)
T ss_pred cCCCCCCEE-EEeCC-------cccCCccEEEEEECCCCeEEEEecCCC-----CC-CeEECCCCCEEEEEeccccccc-
Confidence 445899765 66541 0122 88999999887543222111 13 8899999999887632100000
Q ss_pred CCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCCc-eecCC--------CceEeeeeeC
Q 005240 114 KKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTA-KDFGT--------PAVYTAVEPS 183 (706)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~-~~lt~--------~~~~~~~~~S 183 (706)
.+ .....|.++|+ +++. ..+.. +.....+.||
T Consensus 92 ------rg--------------------------------~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~s 133 (373)
T 2mad_H 92 ------KG--------------------------------KRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANT 133 (373)
T ss_pred ------cC--------------------------------CCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEEC
Confidence 00 01145777777 3322 22211 1234578999
Q ss_pred CCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEc-ccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEe
Q 005240 184 PDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVREL-CDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEA 262 (706)
Q Consensus 184 pDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l-~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~ 262 (706)
|||++|++..... ...|.++| +++++... ....+ .+...|+++. .++..
T Consensus 134 pDG~~l~v~n~~~-----------~~~v~viD-~t~~~~~~~i~~~~----------------~~~~~~~~~~-~~~~~- 183 (373)
T 2mad_H 134 PNNADLLFFQFAA-----------GPAVGLVV-QGGSSDDQLLSSPT----------------CYHIHPGAPS-TFYLL- 183 (373)
T ss_pred CCCCEEEEEecCC-----------CCeEEEEE-CCCCEEeEEcCCCc----------------eEEEEeCCCc-eEEEE-
Confidence 9999998876432 24799999 87655432 32221 1123334333 22111
Q ss_pred ccCCCCccccCccceeeeecCCCCCCCCce-EE------eecccccccceecCCCceEEEEeeccccceEEEEEcCCCCC
Q 005240 263 QDRGDANVEVSPRDIIYTQPAEPAEGEKPE-IL------HKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKD 335 (706)
Q Consensus 263 ~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~-~l------~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~ 335 (706)
...+ .+..++. . ++.. .. .........+.+++++..+++.+ . ..+++.+|+.+..
T Consensus 184 ~~dg----------~~~~vd~---~-g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~---~~~v~vid~~~~~ 245 (373)
T 2mad_H 184 CAQG----------GLAKTDH---A-GGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPV-Y---SGKILQADISAAG 245 (373)
T ss_pred cCCC----------CEEEEEC---C-CcEEEEEeccccccCCcceeecceeEecCCEEEEEc-C---CceEEEEeccCCc
Confidence 1100 1111111 0 1111 00 00111123456778877777664 2 2379999998742
Q ss_pred CCceeeecCcc-----cccccCCCCC-ceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceee
Q 005240 336 VAPRVLFDRVF-----ENVYSDPGSP-MMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKER 409 (706)
Q Consensus 336 ~~~~~l~~~~~-----~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~ 409 (706)
.+.+....+ ......|+.. .+.++|||+++++..... . .+ +.......|+.+|+++++..+
T Consensus 246 --~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~-~---------~~-~~~~~~~~V~VID~~t~~vv~ 312 (373)
T 2mad_H 246 --ATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQ-S---------AW-KLHAAAKEVTSVTGLVGQTSS 312 (373)
T ss_pred --ceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccC-C---------cc-cccCCCCeEEEEECCCCEEEE
Confidence 222211111 0111122221 134566666665543110 0 00 000112358899999988744
Q ss_pred eecccchhhhhhhhhhccCCCceecccCCCEEEEEEecCCCCcEEEEEECCCCceeEe
Q 005240 410 IWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQI 467 (706)
Q Consensus 410 l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~p~~v~~~~~~~~~~~~l 467 (706)
-+.... .-..+.|||||++++|+.... -..|.++|+++++....
T Consensus 313 ~i~~g~------------~p~~i~~s~Dg~~~l~v~~~~--~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 313 QISLGH------------DVDAISVAQDGGPDLYALSAG--TEVLHIYDAGAGDQDQS 356 (373)
T ss_pred EEECCC------------CcCeEEECCCCCeEEEEEcCC--CCeEEEEECCCCCEEee
Confidence 443322 123578999999677765432 25799999998876654
|
| >4g4g_A 4-O-methyl-glucuronoyl methylesterase; alpha/beta hydrolase, 3-layer alpha/beta/alpha sandwich, ROS fold, glucuronoyl esterase; 1.55A {Myceliophthora thermophila} PDB: 4g4i_A 4g4j_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=1e-10 Score=118.86 Aligned_cols=111 Identities=14% Similarity=0.173 Sum_probs=83.3
Q ss_pred eEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcC--------CC
Q 005240 493 VPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGP--------SI 564 (706)
Q Consensus 493 ~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~--------~~ 564 (706)
..+...||+|.+ ++|.|+||.+||+. + ....||+++.-+ .+
T Consensus 123 ~sf~~~i~lP~g-----~~P~Pvii~~~~~~-------------~-------------~~~~G~A~i~f~~~~va~d~~~ 171 (433)
T 4g4g_A 123 ISFSASIRKPSG-----AGPFPAIIGIGGAS-------------I-------------PIPSNVATITFNNDEFGAQMGS 171 (433)
T ss_dssp EEEEEEEECCSS-----SCCEEEEEEESCCC-------------S-------------CCCTTSEEEEECHHHHSCCSSG
T ss_pred EEEEEEEECCCC-----CCCccEEEEECCCc-------------c-------------ccCCCeEEEEeCCcccccccCC
Confidence 467999999975 35799999998741 0 034788887622 23
Q ss_pred CcCCCCCCCCc-----hhh--HHHHHHHHHHHHHHHHH----cCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEec
Q 005240 565 PIIGEGDKLPN-----DRF--VEQLVSSAEAAVEEVVR----RGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIAR 633 (706)
Q Consensus 565 ~~~g~g~~~~~-----~~~--~~~~~~D~~~~~~~l~~----~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~ 633 (706)
+++|+|. |.. ..+ +....-|+..+++||.+ +..||++||+|+|+|+||..|+++++.+ ++|+|+|+.
T Consensus 172 gsrG~g~-f~~ly~~~~~~gal~aWAWg~~raiDyL~~~~~~~~~VD~~RIgv~G~S~gG~~Al~aaA~D-~Ri~~vi~~ 249 (433)
T 4g4g_A 172 GSRGQGK-FYDLFGRDHSAGSLTAWAWGVDRLIDGLEQVGAQASGIDTKRLGVTGCSRNGKGAFITGALV-DRIALTIPQ 249 (433)
T ss_dssp GGTTCSH-HHHHHCTTCSCCHHHHHHHHHHHHHHHHHHHCHHHHCEEEEEEEEEEETHHHHHHHHHHHHC-TTCSEEEEE
T ss_pred CcCCccc-cccccCCccchHHHHHHHHhHHHHHHHHHhccccCCCcChhHEEEEEeCCCcHHHHHHHhcC-CceEEEEEe
Confidence 4556553 221 112 22335689999999999 7889999999999999999999999999 799999999
Q ss_pred cCC
Q 005240 634 SGS 636 (706)
Q Consensus 634 ~~~ 636 (706)
++.
T Consensus 250 ~sg 252 (433)
T 4g4g_A 250 ESG 252 (433)
T ss_dssp SCC
T ss_pred cCC
Confidence 753
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.24 E-value=6.3e-10 Score=118.09 Aligned_cols=253 Identities=11% Similarity=0.006 Sum_probs=145.1
Q ss_pred cceeEeecCCCCCCCCeeeeecCC-CCCcccceeeCC-CCCeEEEEeeccccccccCCceeEEEEEcCCCc--------e
Q 005240 5 TGIGIHRLLPDDSLGPEKEVHGYP-DGAKINFVSWSP-DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE--------A 74 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~i~~~~-~~~~~~~~~~SP-DG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~--------~ 74 (706)
..|.|.++...+.. ...+..+. ....+..+.||| |++.||.... + ..|.++++.++. .
T Consensus 57 g~i~v~~~~~~~~~--~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~--------d--g~v~vw~~~~~~~~~~~~~~~ 124 (402)
T 2aq5_A 57 GAFLVLPLGKTGRV--DKNVPLVCGHTAPVLDIAWCPHNDNVIASGSE--------D--CTVMVWEIPDGGLVLPLREPV 124 (402)
T ss_dssp CCEEEEETTCCEEC--CTTCCCBCCCSSCEEEEEECTTCTTEEEEEET--------T--SEEEEEECCTTCCSSCBCSCS
T ss_pred CEEEEEECccCCCC--CCCCceEecCCCCEEEEEeCCCCCCEEEEEeC--------C--CeEEEEEccCCCCccccCCce
Confidence 35778888552111 11222111 223588999999 8888877642 3 467777777653 2
Q ss_pred eecccCCCccccccccceEEecCCc-EEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhh
Q 005240 75 KPLFESPDICLNAVFGSFVWVNNST-LLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDY 153 (706)
Q Consensus 75 ~~lt~~~~~~~~~~~~~~~wSpDg~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 153 (706)
..+..+.. .+..+.|+|+|+ .|+..+.
T Consensus 125 ~~~~~h~~-----~v~~~~~~p~~~~~l~s~~~----------------------------------------------- 152 (402)
T 2aq5_A 125 ITLEGHTK-----RVGIVAWHPTAQNVLLSAGC----------------------------------------------- 152 (402)
T ss_dssp EEEECCSS-----CEEEEEECSSBTTEEEEEET-----------------------------------------------
T ss_pred EEecCCCC-----eEEEEEECcCCCCEEEEEcC-----------------------------------------------
Confidence 22322222 277899999994 6665432
Q ss_pred cccceEEEEcc-CCC-ceec--CCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcc-cC
Q 005240 154 YTTAQLVLGSL-DGT-AKDF--GTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELC-DL 227 (706)
Q Consensus 154 ~~~~~l~~~~l-~g~-~~~l--t~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~-~~ 227 (706)
.+.|.++|+ +++ ...+ ... ..+..++|+|||+.|+..+.. ..|.+||+..++..... ..
T Consensus 153 --dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------------~~i~iwd~~~~~~~~~~~~~ 217 (402)
T 2aq5_A 153 --DNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRD-------------KRVRVIEPRKGTVVAEKDRP 217 (402)
T ss_dssp --TSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETT-------------SEEEEEETTTTEEEEEEECS
T ss_pred --CCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecC-------------CcEEEEeCCCCceeeeeccC
Confidence 156788888 553 3444 333 678999999999999876643 37999999866543322 22
Q ss_pred CCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCC-ceEEe--ecccccccc
Q 005240 228 PPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEK-PEILH--KLDLRFRSV 304 (706)
Q Consensus 228 ~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-~~~l~--~~~~~~~~~ 304 (706)
... .....+.|+||++. |+ +..... ....|.+||+ .+++ +..+. .....+..+
T Consensus 218 ~~~-----------~~~~~~~~~~~~~~-l~-~g~~~~--------~d~~i~iwd~---~~~~~~~~~~~~~~~~~v~~~ 273 (402)
T 2aq5_A 218 HEG-----------TRPVHAVFVSEGKI-LT-TGFSRM--------SERQVALWDT---KHLEEPLSLQELDTSSGVLLP 273 (402)
T ss_dssp SCS-----------SSCCEEEECSTTEE-EE-EEECTT--------CCEEEEEEET---TBCSSCSEEEECCCCSSCEEE
T ss_pred CCC-----------CcceEEEEcCCCcE-EE-EeccCC--------CCceEEEEcC---ccccCCceEEeccCCCceeEE
Confidence 110 11346799999874 43 321101 1235888888 3333 22222 345667889
Q ss_pred eecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEE
Q 005240 305 SWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVI 368 (706)
Q Consensus 305 ~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~ 368 (706)
.|+||++.|++.... ++. |.++++.+++.....+..... ......+.|+|+|..++
T Consensus 274 ~~s~~~~~l~~~g~~-dg~--i~i~d~~~~~~~~~~l~~~~~-----~~~v~~~~~sp~~~~~~ 329 (402)
T 2aq5_A 274 FFDPDTNIVYLCGKG-DSS--IRYFEITSEAPFLHYLSMFSS-----KESQRGMGYMPKRGLEV 329 (402)
T ss_dssp EEETTTTEEEEEETT-CSC--EEEEEECSSTTCEEEEEEECC-----SSCCSEEEECCGGGSCG
T ss_pred EEcCCCCEEEEEEcC-CCe--EEEEEecCCCcceEeeccccc-----CCcccceEEecccccce
Confidence 999999988765422 233 555555553211223321110 01123477899988754
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=2.3e-09 Score=115.28 Aligned_cols=125 Identities=7% Similarity=0.099 Sum_probs=71.1
Q ss_pred ceEeeeeeCCCC-cEEEEEeeccCcccccccccccceEEEEecCCCee-----EEcccCCCCCCCCcccCccCCCCccee
Q 005240 175 AVYTAVEPSPDQ-KYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-----RELCDLPPAEDIPVCYNSVREGMRSIS 248 (706)
Q Consensus 175 ~~~~~~~~SpDG-~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----~~l~~~~~~~~~p~~~~~~~~g~~~~~ 248 (706)
..+..++|+|+| +.|+..+.. ..|.+||+..++. +.+........... +......+..+.
T Consensus 227 ~~v~~~~~~p~~~~~l~s~~~d-------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~ 292 (447)
T 3dw8_B 227 EVITAAEFHPNSCNTFVYSSSK-------------GTIRLCDMRASALCDRHSKLFEEPEDPSNRSF-FSEIISSISDVK 292 (447)
T ss_dssp CCEEEEEECSSCTTEEEEEETT-------------SCEEEEETTTCSSSCTTCEEECCC-----CCH-HHHHTTCEEEEE
T ss_pred cceEEEEECCCCCcEEEEEeCC-------------CeEEEEECcCCccccceeeEeccCCCcccccc-ccccCceEEEEE
Confidence 578899999999 777655543 3799999986553 33332211000000 000001245789
Q ss_pred eecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCC-CC-ceEEeecccc---------------cccceecCCCc
Q 005240 249 WRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEG-EK-PEILHKLDLR---------------FRSVSWCDDSL 311 (706)
Q Consensus 249 ~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~-~~~l~~~~~~---------------~~~~~wspDg~ 311 (706)
|+|||+. |+... . ..|.+||+ .. ++ ...+...... ...+.|+|||+
T Consensus 293 ~s~~g~~-l~~~~------------~-~~v~iwd~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~ 355 (447)
T 3dw8_B 293 FSHSGRY-MMTRD------------Y-LSVKVWDL---NMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDS 355 (447)
T ss_dssp ECTTSSE-EEEEE------------S-SEEEEEET---TCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSS
T ss_pred ECCCCCE-EEEee------------C-CeEEEEeC---CCCccccceeeccccccccccccccccccccceEEEECCCCC
Confidence 9999986 54321 1 24788888 32 33 3334333221 12389999999
Q ss_pred eEEEEeeccccceEEEEEcCCCC
Q 005240 312 ALVNETWYKTSQTRTWLVCPGSK 334 (706)
Q Consensus 312 ~l~~~~~~~~~~~~l~~~d~~~~ 334 (706)
.|+..+. ...|+++|+.++
T Consensus 356 ~l~s~s~----dg~v~iwd~~~~ 374 (447)
T 3dw8_B 356 VVMTGSY----NNFFRMFDRNTK 374 (447)
T ss_dssp EEEEECS----TTEEEEEETTTC
T ss_pred EEEEecc----CCEEEEEEcCCC
Confidence 9876542 235777787774
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.24 E-value=3.1e-09 Score=113.49 Aligned_cols=252 Identities=12% Similarity=0.079 Sum_probs=154.6
Q ss_pred cceeEeecCCCCCCCCeeeeecCCC-CCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCc
Q 005240 5 TGIGIHRLLPDDSLGPEKEVHGYPD-GAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~i~~~~~-~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~ 83 (706)
..|+|+|+.. |+..++-.+.. ...+..++|||||++||.... + ..|.++++++++..+......
T Consensus 125 ~tV~lWd~~t----g~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~--------D--g~v~iWd~~~~~~~~~~~~h~- 189 (420)
T 4gga_A 125 NSVYLWSASS----GDILQLLQMEQPGEYISSVAWIKEGNYLAVGTS--------S--AEVQLWDVQQQKRLRNMTSHS- 189 (420)
T ss_dssp TEEEEEETTT----CCEEEEEECCSTTCCEEEEEECTTSSEEEEEET--------T--SCEEEEETTTTEEEEEECCCS-
T ss_pred CEEEEEECCC----CCEEEEEEecCCCCcEEEEEECCCCCEEEEEEC--------C--CeEEEEEcCCCcEEEEEeCCC-
Confidence 4689999988 88776654433 336899999999999987643 3 467777888877554432221
Q ss_pred cccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEc
Q 005240 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (706)
Q Consensus 84 ~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~ 163 (706)
.....+++|++.|+..+.. ..++.++
T Consensus 190 -----~~v~~~s~~~~~l~sgs~d-------------------------------------------------~~i~~~d 215 (420)
T 4gga_A 190 -----ARVGSLSWNSYILSSGSRS-------------------------------------------------GHIHHHD 215 (420)
T ss_dssp -----SCEEEEEEETTEEEEEETT-------------------------------------------------SEEEEEE
T ss_pred -----CceEEEeeCCCEEEEEeCC-------------------------------------------------CceeEee
Confidence 1223455577777765421 4566666
Q ss_pred cCC---CceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeE--EcccCCCCCCCCccc
Q 005240 164 LDG---TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR--ELCDLPPAEDIPVCY 237 (706)
Q Consensus 164 l~g---~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~l~~~~~~~~~p~~~ 237 (706)
... ....+... ..+..+.|+|+|+.|+....+ ..+.+|+...++.. .+......
T Consensus 216 ~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D-------------~~v~i~~~~~~~~~~~~~~~~~~~------- 275 (420)
T 4gga_A 216 VRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGND-------------NLVNVWPSAPGEGGWVPLQTFTQH------- 275 (420)
T ss_dssp TTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETT-------------SCEEEEESSCCSSCSCCSEEECCC-------
T ss_pred ecccceeeEEecccccceeeeeecCCCCeeeeeecc-------------ccceEEeeccccccceeeeeeccc-------
Confidence 632 22333333 577889999999999866544 36888988754311 11111000
Q ss_pred CccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEe
Q 005240 238 NSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNET 317 (706)
Q Consensus 238 ~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~ 317 (706)
...+..+.|+|++.. ++.+.. +.. ...|.+||+ .+++..........+....|+|+++.++..+
T Consensus 276 ---~~~V~~~~~~p~~~~-~la~~~--gs~-------D~~I~iwd~---~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~s 339 (420)
T 4gga_A 276 ---QGAVKAVAWCPWQSN-VLATGG--GTS-------DRHIRIWNV---CSGACLSAVDAHSQVCSILWSPHYKELISGH 339 (420)
T ss_dssp ---SSCEEEEEECTTCTT-EEEEEE--CTT-------TCEEEEEET---TTTEEEEEEECSSCEEEEEEETTTTEEEEEE
T ss_pred ---CCceeeeeeCCCccc-EEEEEe--ecC-------CCEEEEEeC---CccccceeeccccceeeeeecCCCCeEEEEE
Confidence 022457899999988 443321 111 124888888 5665555555566778889999999998765
Q ss_pred eccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEee
Q 005240 318 WYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 318 ~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 371 (706)
...+ ..|.++|+.++ ++...+...-.. ...++|+|||++|+...
T Consensus 340 g~~d--~~I~iwd~~~~--~~v~~l~gH~~~------V~~l~~spdg~~l~S~s 383 (420)
T 4gga_A 340 GFAQ--NQLVIWKYPTM--AKVAELKGHTSR------VLSLTMSPDGATVASAA 383 (420)
T ss_dssp CTTT--CCEEEEETTTC--CEEEEECCCSSC------EEEEEECTTSSCEEEEE
T ss_pred ecCC--CEEEEEECCCC--cEEEEEcCCCCC------EEEEEEcCCCCEEEEEe
Confidence 3332 34666777764 333323322111 23478999999887654
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.23 E-value=1e-09 Score=113.91 Aligned_cols=215 Identities=8% Similarity=0.013 Sum_probs=130.6
Q ss_pred cceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCC---CCeEEEEeeccccccccCCceeEEEEEcCCCc-e-eeccc
Q 005240 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPD---GKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-A-KPLFE 79 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPD---G~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~-~-~~lt~ 79 (706)
..|.|+++.. ++...+........+..+.|+|+ |+.|+.... ...|.++++.+++ . ..+..
T Consensus 44 ~~v~iw~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~ 109 (357)
T 3i2n_A 44 GVIQLYEIQH----GDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDF----------GGNLHIWNLEAPEMPVYSVKG 109 (357)
T ss_dssp EEEEEEEECS----SSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEET----------TSCEEEECTTSCSSCSEEECC
T ss_pred cEEEEEeCCC----CcccceeeecccCcEEEEEEcCCCCCCceEEEecC----------CCeEEEEeCCCCCccEEEEEe
Confidence 4688999977 76665543334446889999999 688877542 3567778888765 3 33332
Q ss_pred CCCccccccccce------EEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhh
Q 005240 80 SPDICLNAVFGSF------VWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDY 153 (706)
Q Consensus 80 ~~~~~~~~~~~~~------~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 153 (706)
+.. .+..+ .|+||++.|+..+.+
T Consensus 110 ~~~-----~v~~~~~~~~~~~s~~~~~l~~~~~d---------------------------------------------- 138 (357)
T 3i2n_A 110 HKE-----IINAIDGIGGLGIGEGAPEIVTGSRD---------------------------------------------- 138 (357)
T ss_dssp CSS-----CEEEEEEESGGGCC-CCCEEEEEETT----------------------------------------------
T ss_pred ccc-----ceEEEeeccccccCCCccEEEEEeCC----------------------------------------------
Confidence 222 24555 467899988876421
Q ss_pred cccceEEEEcc-CCC--ceecCCC-----ceEeeee----eCCCCcEEEEEeeccCcccccccccccceEEEEecCCCee
Q 005240 154 YTTAQLVLGSL-DGT--AKDFGTP-----AVYTAVE----PSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV 221 (706)
Q Consensus 154 ~~~~~l~~~~l-~g~--~~~lt~~-----~~~~~~~----~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 221 (706)
+.|.++++ +++ ...+... ..+..+. |+|+++.|+..... ..|.+|++.+++.
T Consensus 139 ---~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d-------------~~i~i~d~~~~~~ 202 (357)
T 3i2n_A 139 ---GTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDN-------------GDIKLFDLRNMAL 202 (357)
T ss_dssp ---SCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETT-------------SEEEEEETTTTEE
T ss_pred ---CeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccC-------------CeEEEEECccCce
Confidence 46777787 332 3333221 2445555 89999999876543 3799999998776
Q ss_pred EEcccCCCCCCCCcccCccCCCCcceeeec---CCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCC-ceEEe--
Q 005240 222 RELCDLPPAEDIPVCYNSVREGMRSISWRA---DKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEK-PEILH-- 295 (706)
Q Consensus 222 ~~l~~~~~~~~~p~~~~~~~~g~~~~~~sp---dg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-~~~l~-- 295 (706)
....... ..+..+.|+| ++.. |+... . .+.|.++|+ ..++ ...+.
T Consensus 203 ~~~~~~~-------------~~v~~~~~~~~~~~~~~-l~~~~-~-----------dg~i~i~d~---~~~~~~~~~~~~ 253 (357)
T 3i2n_A 203 RWETNIK-------------NGVCSLEFDRKDISMNK-LVATS-L-----------EGKFHVFDM---RTQHPTKGFASV 253 (357)
T ss_dssp EEEEECS-------------SCEEEEEESCSSSSCCE-EEEEE-S-----------TTEEEEEEE---EEEETTTEEEEE
T ss_pred eeecCCC-------------CceEEEEcCCCCCCCCE-EEEEC-C-----------CCeEEEEeC---cCCCcccceeee
Confidence 5543332 2244789999 8875 54331 1 124777777 3332 22222
Q ss_pred ---ecccccccceecCCCceEEEEeeccccceEEEEEc
Q 005240 296 ---KLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVC 330 (706)
Q Consensus 296 ---~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d 330 (706)
.....+..+.|+|++..+++....+ +..+||.+.
T Consensus 254 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~i~iwd~~ 290 (357)
T 3i2n_A 254 SEKAHKSTVWQVRHLPQNRELFLTAGGA-GGLHLWKYE 290 (357)
T ss_dssp EEECCSSCEEEEEEETTEEEEEEEEETT-SEEEEEEEE
T ss_pred ccCCCcCCEEEEEECCCCCcEEEEEeCC-CcEEEeecC
Confidence 4567788999999998444433232 444555554
|
| >4f21_A Carboxylesterase/phospholipase family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.7e-10 Score=113.05 Aligned_cols=108 Identities=15% Similarity=0.099 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCCCC------------CCCcc-----
Q 005240 583 VSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKT------------LTPFG----- 645 (706)
Q Consensus 583 ~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d~~------------~~~~~----- 645 (706)
+..+...++...+. -+|++||+++|+|+||+|++.++.++|+.|+++++++|..... .+|..
T Consensus 114 ~~~i~~li~~~~~~-gi~~~ri~l~GfSqGg~~a~~~~~~~~~~~a~~i~~sG~lp~~~~~~~~~~~~~~~~Pvl~~HG~ 192 (246)
T 4f21_A 114 IAKVNKLIDSQVNQ-GIASENIILAGFSQGGIIATYTAITSQRKLGGIMALSTYLPAWDNFKGKITSINKGLPILVCHGT 192 (246)
T ss_dssp HHHHHHHHHHHHHC--CCGGGEEEEEETTTTHHHHHHHTTCSSCCCEEEEESCCCTTHHHHSTTCCGGGTTCCEEEEEET
T ss_pred HHHHHHHHHHHHHc-CCChhcEEEEEeCchHHHHHHHHHhCccccccceehhhccCccccccccccccccCCchhhcccC
Confidence 33334444433333 4899999999999999999999999999999999999864211 11211
Q ss_pred -------chHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHhc
Q 005240 646 -------FQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCL 696 (706)
Q Consensus 646 -------~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~~~~l~ 696 (706)
-..+++++.|++.|.++++..|||.+|.+. .+.++.+.+||++.|+
T Consensus 193 ~D~vVp~~~~~~~~~~L~~~g~~v~~~~y~g~gH~i~-----~~~l~~~~~fL~k~l~ 245 (246)
T 4f21_A 193 DDQVLPEVLGHDLSDKLKVSGFANEYKHYVGMQHSVC-----MEEIKDISNFIAKTFK 245 (246)
T ss_dssp TCSSSCHHHHHHHHHHHHTTTCCEEEEEESSCCSSCC-----HHHHHHHHHHHHHHTT
T ss_pred CCCccCHHHHHHHHHHHHHCCCCeEEEEECCCCCccC-----HHHHHHHHHHHHHHhC
Confidence 123488999999999999999999999876 3567889999999885
|
| >3vdx_A Designed 16NM tetrahedral protein CAGE containing bromoperoxidase BPO-A2 and matrix...; protein design, bionanotechnology; 3.00A {Streptomyces aureofaciens} PDB: 4d9j_A | Back alignment and structure |
|---|
Probab=99.22 E-value=3e-10 Score=122.55 Aligned_cols=122 Identities=10% Similarity=-0.004 Sum_probs=87.2
Q ss_pred eEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEc
Q 005240 482 KEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAG 561 (706)
Q Consensus 482 ~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~ 561 (706)
...+.+.+.||..+..... . . .|+||++||.+.. ...+ ...+..|++.||.|+..
T Consensus 3 ~i~~~~~~~dG~~l~y~~~-G------~---gp~VV~lHG~~~~-----------~~~~----~~l~~~La~~Gy~Vi~~ 57 (456)
T 3vdx_A 3 FITVGQENSTSIDLYYEDH-G------T---GVPVVLIHGFPLS-----------GHSW----ERQSAALLDAGYRVITY 57 (456)
T ss_dssp EEEEEEETTEEEEEEEEEE-S------S---SEEEEEECCTTCC-----------GGGG----TTHHHHHHHHTEEEEEE
T ss_pred eEeecccccCCeEEEEEEe-C------C---CCEEEEECCCCCc-----------HHHH----HHHHHHHHHCCcEEEEE
Confidence 3456666778877774433 1 1 3789999997521 1112 13567788899999997
Q ss_pred CCCCcCCCCCCCCc--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhC-CCceeEEEeccCCC
Q 005240 562 PSIPIIGEGDKLPN--DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHA-PHLFCCGIARSGSY 637 (706)
Q Consensus 562 ~~~~~~g~g~~~~~--~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~-p~~~~a~v~~~~~~ 637 (706)
+.+ |+|.+... ........+|+.++++++ +.+++.++|||+||++++.++.++ |++++++++.++..
T Consensus 58 D~r---G~G~S~~~~~~~s~~~~a~dl~~~l~~l------~~~~v~LvGhS~GG~ia~~~aa~~~p~~v~~lVli~~~~ 127 (456)
T 3vdx_A 58 DRR---GFGQSSQPTTGYDYDTFAADLNTVLETL------DLQDAVLVGFSMGTGEVARYVSSYGTARIAAVAFLASLE 127 (456)
T ss_dssp CCT---TSTTSCCCSSCCSHHHHHHHHHHHHHHH------TCCSEEEEEEGGGGHHHHHHHHHHCSSSEEEEEEESCCC
T ss_pred CCC---CCCCCCCCCCCCCHHHHHHHHHHHHHHh------CCCCeEEEEECHHHHHHHHHHHhcchhheeEEEEeCCcc
Confidence 766 45544332 234566788888888876 446899999999999998888877 89999999999865
|
| >2qjw_A Uncharacterized protein XCC1541; putative hydrolase of the alpha/beta superfamily, structural genomics; HET: MSE TLA P6G; 1.35A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.20 E-value=6.4e-11 Score=109.71 Aligned_cols=152 Identities=11% Similarity=0.061 Sum_probs=98.3
Q ss_pred ceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHH
Q 005240 513 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEE 592 (706)
Q Consensus 513 ~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~ 592 (706)
.|+||++||.+.. ...+ ....+...|+++||.|+.++.++ +|.+.... ......+++..++++
T Consensus 4 ~~~vv~~HG~~~~-----------~~~~--~~~~~~~~l~~~g~~v~~~d~~g---~g~s~~~~-~~~~~~~~~~~~~~~ 66 (176)
T 2qjw_A 4 RGHCILAHGFESG-----------PDAL--KVTALAEVAERLGWTHERPDFTD---LDARRDLG-QLGDVRGRLQRLLEI 66 (176)
T ss_dssp SCEEEEECCTTCC-----------TTSH--HHHHHHHHHHHTTCEEECCCCHH---HHTCGGGC-TTCCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCC-----------ccHH--HHHHHHHHHHHCCCEEEEeCCCC---CCCCCCCC-CCCCHHHHHHHHHHH
Confidence 5899999996311 0111 01145667888999999977653 44332111 111223444555666
Q ss_pred HHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCCCCC--------CCcc---------c---hHHHHH
Q 005240 593 VVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTL--------TPFG---------F---QAERFF 652 (706)
Q Consensus 593 l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d~~~--------~~~~---------~---~~~~~~ 652 (706)
+.+.. +.++++++|+|+||++++.++.++| ++++++.+|..+... .|.. . ...+++
T Consensus 67 ~~~~~--~~~~~~l~G~S~Gg~~a~~~a~~~~--~~~~v~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~ 142 (176)
T 2qjw_A 67 ARAAT--EKGPVVLAGSSLGSYIAAQVSLQVP--TRALFLMVPPTKMGPLPALDAAAVPISIVHAWHDELIPAADVIAWA 142 (176)
T ss_dssp HHHHH--TTSCEEEEEETHHHHHHHHHHTTSC--CSEEEEESCCSCBTTBCCCCCCSSCEEEEEETTCSSSCHHHHHHHH
T ss_pred HHhcC--CCCCEEEEEECHHHHHHHHHHHhcC--hhheEEECCcCCccccCcccccCCCEEEEEcCCCCccCHHHHHHHH
Confidence 66553 4579999999999999999999997 999999998765221 1211 1 122555
Q ss_pred HHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 005240 653 DALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQK 693 (706)
Q Consensus 653 ~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~~~ 693 (706)
+.+ +.+++++ +++|.+. ....++.+.+.+||++
T Consensus 143 ~~~-----~~~~~~~-~~~H~~~--~~~~~~~~~i~~fl~~ 175 (176)
T 2qjw_A 143 QAR-----SARLLLV-DDGHRLG--AHVQAASRAFAELLQS 175 (176)
T ss_dssp HHH-----TCEEEEE-SSCTTCT--TCHHHHHHHHHHHHHT
T ss_pred HhC-----CceEEEe-CCCcccc--ccHHHHHHHHHHHHHh
Confidence 554 5688888 8999984 4567778888888764
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.19 E-value=5.3e-09 Score=109.18 Aligned_cols=217 Identities=15% Similarity=0.201 Sum_probs=133.1
Q ss_pred cceeEeecCCCCCCCCeeeeecCC-CCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCc
Q 005240 5 TGIGIHRLLPDDSLGPEKEVHGYP-DGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~i~~~~-~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~ 83 (706)
..|.|+++.. ++.+.+..+. ....+..+.|+|||+.|+.... + ..|.++++++++..+.......
T Consensus 30 ~~v~i~~~~~----~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~--------d--g~i~vwd~~~~~~~~~~~~~~~ 95 (372)
T 1k8k_C 30 HEVHIYEKSG----NKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGT--------D--RNAYVWTLKGRTWKPTLVILRI 95 (372)
T ss_dssp SEEEEEEEET----TEEEEEEEEECCSSCEEEEEEETTTTEEEEEET--------T--SCEEEEEEETTEEEEEEECCCC
T ss_pred CEEEEEeCCC----CcEEeeeeecCCCCcccEEEEeCCCCEEEEEcC--------C--CeEEEEECCCCeeeeeEEeecC
Confidence 4688899876 6422332222 2235889999999999987642 3 4566667777763332211111
Q ss_pred cccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEc
Q 005240 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (706)
Q Consensus 84 ~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~ 163 (706)
...+..+.|+|||++|+..... +.|.+++
T Consensus 96 --~~~v~~~~~~~~~~~l~~~~~d-------------------------------------------------~~v~i~d 124 (372)
T 1k8k_C 96 --NRAARCVRWAPNEKKFAVGSGS-------------------------------------------------RVISICY 124 (372)
T ss_dssp --SSCEEEEEECTTSSEEEEEETT-------------------------------------------------SSEEEEE
T ss_pred --CCceeEEEECCCCCEEEEEeCC-------------------------------------------------CEEEEEE
Confidence 1137789999999998876421 3455556
Q ss_pred c-CCC----ceecCCC--ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecC-------------------
Q 005240 164 L-DGT----AKDFGTP--AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD------------------- 217 (706)
Q Consensus 164 l-~g~----~~~lt~~--~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~------------------- 217 (706)
+ .++ ...+... ..+..++|+|||++|+..+.. ..+.+|++.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-------------g~i~~~d~~~~~~~~~~~~~~~~~~~~~ 191 (372)
T 1k8k_C 125 FEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD-------------FKCRIFSAYIKEVEERPAPTPWGSKMPF 191 (372)
T ss_dssp EETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETT-------------SCEEEEECCCTTTSCCCCCBTTBSCCCT
T ss_pred ecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCC-------------CCEEEEEcccccccccccccccccccch
Confidence 6 232 2333222 678899999999998866543 378899964
Q ss_pred CCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCc-eEEee
Q 005240 218 GKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP-EILHK 296 (706)
Q Consensus 218 ~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~-~~l~~ 296 (706)
+.....+.... ..+..+.|+||++. |+... . .+.|.++|+ ..++. ..+..
T Consensus 192 ~~~~~~~~~~~-------------~~v~~~~~~~~~~~-l~~~~-~-----------d~~i~i~d~---~~~~~~~~~~~ 242 (372)
T 1k8k_C 192 GELMFESSSSC-------------GWVHGVCFSANGSR-VAWVS-H-----------DSTVCLADA---DKKMAVATLAS 242 (372)
T ss_dssp TCEEEECCCCS-------------SCEEEEEECSSSSE-EEEEE-T-----------TTEEEEEEG---GGTTEEEEEEC
T ss_pred hhheEecCCCC-------------CeEEEEEECCCCCE-EEEEe-C-----------CCEEEEEEC---CCCceeEEEcc
Confidence 22222222111 12447899999986 55332 1 124788888 44443 34445
Q ss_pred cccccccceecCCCceEEEEeeccccceEEEEEcC
Q 005240 297 LDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCP 331 (706)
Q Consensus 297 ~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~ 331 (706)
....+..+.|+||++.|+.. .++...+|.++.
T Consensus 243 ~~~~v~~~~~~~~~~~l~~~---~d~~i~i~~~~~ 274 (372)
T 1k8k_C 243 ETLPLLAVTFITESSLVAAG---HDCFPVLFTYDS 274 (372)
T ss_dssp SSCCEEEEEEEETTEEEEEE---TTSSCEEEEEET
T ss_pred CCCCeEEEEEecCCCEEEEE---eCCeEEEEEccC
Confidence 56678899999999977654 234556666654
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=99.19 E-value=4.7e-09 Score=106.67 Aligned_cols=214 Identities=12% Similarity=0.113 Sum_probs=132.6
Q ss_pred ceeEeecCCCCCCCCe-eeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecc-cCCCc
Q 005240 6 GIGIHRLLPDDSLGPE-KEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLF-ESPDI 83 (706)
Q Consensus 6 ~~~~~~~~~~~~~g~~-~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt-~~~~~ 83 (706)
.|.|.++.. ++. +.+.. ....+...+|+|||++|+..+. ...|.++|+.+++..... .+..
T Consensus 36 ~v~lWd~~~----~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~s~----------d~~i~vwd~~~~~~~~~~~~h~~- 98 (304)
T 2ynn_A 36 RVELWNYET----QVEVRSIQV--TETPVRAGKFIARKNWIIVGSD----------DFRIRVFNYNTGEKVVDFEAHPD- 98 (304)
T ss_dssp EEEEEETTT----TEEEEEEEC--CSSCEEEEEEEGGGTEEEEEET----------TSEEEEEETTTCCEEEEEECCSS-
T ss_pred cEEEEECCC----CceeEEeec--cCCcEEEEEEeCCCCEEEEECC----------CCEEEEEECCCCcEEEEEeCCCC-
Confidence 578888866 543 23332 2224778999999999987642 357788898888755433 2222
Q ss_pred cccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEc
Q 005240 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (706)
Q Consensus 84 ~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~ 163 (706)
.+..+.|+|++++|+..+.+ +.|.++|
T Consensus 99 ----~v~~~~~~~~~~~l~sgs~D-------------------------------------------------~~v~lWd 125 (304)
T 2ynn_A 99 ----YIRSIAVHPTKPYVLSGSDD-------------------------------------------------LTVKLWN 125 (304)
T ss_dssp ----CEEEEEECSSSSEEEEEETT-------------------------------------------------SCEEEEE
T ss_pred ----cEEEEEEcCCCCEEEEECCC-------------------------------------------------CeEEEEE
Confidence 27789999999988866421 4567777
Q ss_pred c-CC-Ccee-cCCC-ceEeeeeeCC-CCcEEEEEeeccCcccccccccccceEEEEecCCCe-eEEcccCCCCCCCCccc
Q 005240 164 L-DG-TAKD-FGTP-AVYTAVEPSP-DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL-VRELCDLPPAEDIPVCY 237 (706)
Q Consensus 164 l-~g-~~~~-lt~~-~~~~~~~~Sp-DG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~~~~~p~~~ 237 (706)
+ ++ .... +... ..+..++|+| |++.|+..+.+ ..|.+||+.... ...+.....
T Consensus 126 ~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D-------------~~v~iwd~~~~~~~~~~~~~~~-------- 184 (304)
T 2ynn_A 126 WENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLD-------------RTVKVWSLGQSTPNFTLTTGQE-------- 184 (304)
T ss_dssp GGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETT-------------SEEEEEETTCSSCSEEEECCCT--------
T ss_pred CCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCC-------------CeEEEEECCCCCccceeccCCc--------
Confidence 7 34 3333 3333 6788999999 56677654433 379999997443 222222110
Q ss_pred CccCCCCcceeeec--CCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCC-ceEEeecccccccceecCCCceEE
Q 005240 238 NSVREGMRSISWRA--DKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEK-PEILHKLDLRFRSVSWCDDSLALV 314 (706)
Q Consensus 238 ~~~~~g~~~~~~sp--dg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-~~~l~~~~~~~~~~~wspDg~~l~ 314 (706)
.+...+.|+| +++. |+ .... ...|.+||+ .+++ ...+..+...+..+.|+|++..|+
T Consensus 185 ----~~v~~~~~~~~~~~~~-l~-s~s~-----------D~~i~iWd~---~~~~~~~~~~~h~~~v~~~~~~p~~~~l~ 244 (304)
T 2ynn_A 185 ----RGVNYVDYYPLPDKPY-MI-TASD-----------DLTIKIWDY---QTKSCVATLEGHMSNVSFAVFHPTLPIII 244 (304)
T ss_dssp ----TCEEEEEECCSTTCCE-EE-EEET-----------TSEEEEEET---TTTEEEEEEECCSSCEEEEEECSSSSEEE
T ss_pred ----CcEEEEEEEEcCCCCE-EE-EEcC-----------CCeEEEEeC---CCCccceeeCCCCCCEEEEEECCCCCEEE
Confidence 1233456766 5543 33 2211 125888888 4443 344556677788899999999888
Q ss_pred EEeeccccceEEEEEcCCCC
Q 005240 315 NETWYKTSQTRTWLVCPGSK 334 (706)
Q Consensus 315 ~~~~~~~~~~~l~~~d~~~~ 334 (706)
..+.+ +. |.++|+.+.
T Consensus 245 s~s~D--g~--i~iWd~~~~ 260 (304)
T 2ynn_A 245 SGSED--GT--LKIWNSSTY 260 (304)
T ss_dssp EEETT--SC--EEEEETTTC
T ss_pred EEcCC--Ce--EEEEECCCC
Confidence 76522 33 556677663
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.18 E-value=2.7e-10 Score=119.60 Aligned_cols=216 Identities=10% Similarity=0.145 Sum_probs=125.8
Q ss_pred cceeEeecCCCCCCCCeeeeecCCC-CCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCc----eeeccc
Q 005240 5 TGIGIHRLLPDDSLGPEKEVHGYPD-GAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE----AKPLFE 79 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~i~~~~~-~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~----~~~lt~ 79 (706)
..|.|+++.. +..+.+..+.. ...+..++|||||++|+.... + ..|.++|+.+++ ...+..
T Consensus 33 ~~i~iw~~~~----~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~--------d--~~v~vwd~~~~~~~~~~~~~~~ 98 (377)
T 3dwl_C 33 NQVELYEQDG----NGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQ--------D--RNAYVYEKRPDGTWKQTLVLLR 98 (377)
T ss_dssp SCBCEEEEET----TEEEECCCBCCCSSCEEEEEECTTTCCEEEEET--------T--SSEEEC------CCCCEEECCC
T ss_pred CEEEEEEccC----CceEEEEEEecCCceEEEEEEeCCCCEEEEEeC--------C--CeEEEEEcCCCCceeeeeEecc
Confidence 4578888866 53334433332 236889999999999988653 3 456777777765 333332
Q ss_pred CCCccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceE
Q 005240 80 SPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQL 159 (706)
Q Consensus 80 ~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l 159 (706)
+.. .+..+.|+|||++|+..+.+ +.|
T Consensus 99 ~~~-----~v~~~~~~~~~~~l~~~~~d-------------------------------------------------~~i 124 (377)
T 3dwl_C 99 LNR-----AATFVRWSPNEDKFAVGSGA-------------------------------------------------RVI 124 (377)
T ss_dssp CSS-----CEEEEECCTTSSCCEEEESS-------------------------------------------------SCE
T ss_pred cCC-----ceEEEEECCCCCEEEEEecC-------------------------------------------------CeE
Confidence 222 37789999999988876421 456
Q ss_pred EEEccC-CC----ceecCC-C-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccC-CCCC
Q 005240 160 VLGSLD-GT----AKDFGT-P-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDL-PPAE 231 (706)
Q Consensus 160 ~~~~l~-g~----~~~lt~-~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~-~~~~ 231 (706)
.++++. ++ .+.+.. . ..+..++|+|||++|+..+.+ ..|.+|++.......-... ....
T Consensus 125 ~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d-------------~~i~iwd~~~~~~~~~~~~~~~~~ 191 (377)
T 3dwl_C 125 SVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCAD-------------RKAYVLSAYVRDVDAKPEASVWGS 191 (377)
T ss_dssp EECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESS-------------SCEEEEEECCSSCC-CCCSCSSCS
T ss_pred EEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCC-------------CEEEEEEEEecccCCCcccccccc
Confidence 677773 33 455554 3 678899999999999876654 3688999863221100000 0000
Q ss_pred CCC----cccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCC-----ceEEeecccccc
Q 005240 232 DIP----VCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEK-----PEILHKLDLRFR 302 (706)
Q Consensus 232 ~~p----~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-----~~~l~~~~~~~~ 302 (706)
..+ .........+..+.|+|||+. |+... . .+.|.+||+ .+++ ...+......+.
T Consensus 192 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~-l~~~~-~-----------d~~i~iwd~---~~~~~~~~~~~~~~~~~~~v~ 255 (377)
T 3dwl_C 192 RLPFNTVCAEYPSGGWVHAVGFSPSGNA-LAYAG-H-----------DSSVTIAYP---SAPEQPPRALITVKLSQLPLR 255 (377)
T ss_dssp CCCEEEEEECCCCSSSEEEEEECTTSSC-EEEEE-T-----------TTEEC-CEE---CSTTSCEEECCCEECSSSCEE
T ss_pred ccchhhhhhcccCCceEEEEEECCCCCE-EEEEe-C-----------CCcEEEEEC---CCCCCcceeeEeecCCCCceE
Confidence 000 000000122457899999997 65432 1 124778888 4444 344556677788
Q ss_pred cceecCCCceEEEEe
Q 005240 303 SVSWCDDSLALVNET 317 (706)
Q Consensus 303 ~~~wspDg~~l~~~~ 317 (706)
.+.|+|||+.|+..+
T Consensus 256 ~~~~s~~~~~l~~~~ 270 (377)
T 3dwl_C 256 SLLWANESAIVAAGY 270 (377)
T ss_dssp EEEEEETTEEEEEES
T ss_pred EEEEcCCCCEEEEEc
Confidence 999999999887653
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.6e-08 Score=102.86 Aligned_cols=278 Identities=12% Similarity=0.119 Sum_probs=156.1
Q ss_pred cceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCCC
Q 005240 34 NFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPP 113 (706)
Q Consensus 34 ~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~ 113 (706)
.-+.|||++ .||... + ..|.++|+++|+..++.....+ ...+..+.|+|||++|+..+.+
T Consensus 29 ~~l~WS~~~-~lAvg~---------D--~tV~iWd~~tg~~~~~~~~~~~--~~~V~~v~~~~~~~~l~sgs~D------ 88 (318)
T 4ggc_A 29 NLVDWSSGN-VLAVAL---------D--NSVYLWSASSGDILQLLQMEQP--GEYISSVAWIKEGNYLAVGTSS------ 88 (318)
T ss_dssp BCEEECTTS-EEEEEE---------T--TEEEEEETTTCCEEEEEECCST--TCCEEEEEECTTSSEEEEEETT------
T ss_pred eEEEECCCC-EEEEEe---------C--CEEEEEECCCCCEEEEEEecCC--CCeEEEEEECCCCCEEEEEECC------
Confidence 457999987 676643 2 4688899999987765432221 1126789999999998876421
Q ss_pred CCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCCc-eecCCCceEeeeeeCCCCcEEEE
Q 005240 114 KKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTA-KDFGTPAVYTAVEPSPDQKYVLI 191 (706)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~-~~lt~~~~~~~~~~SpDG~~i~~ 191 (706)
+.|.++++ +++. +.+... ......++++++.|+.
T Consensus 89 -------------------------------------------g~v~iw~~~~~~~~~~~~~h-~~~~~~~~~~~~~l~s 124 (318)
T 4ggc_A 89 -------------------------------------------AEVQLWDVQQQKRLRNMTSH-SARVGSLSWNSYILSS 124 (318)
T ss_dssp -------------------------------------------SEEEEEETTTTEEEEEEECC-SSCEEEEEEETTEEEE
T ss_pred -------------------------------------------CcEEEeecCCceeEEEecCc-cceEEEeecCCCEEEE
Confidence 56777788 5533 333332 1223346677777765
Q ss_pred EeeccCcccccccccccceEEEEecCCCe--eEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCc
Q 005240 192 TSMHRPYSYKVPCARFSQKVQVWTTDGKL--VRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDAN 269 (706)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~ 269 (706)
.+.. ..+.+++..... ...+.... .....+.|+++++. |+.. ..+
T Consensus 125 ~~~~-------------~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~-l~s~-~~d----- 171 (318)
T 4ggc_A 125 GSRS-------------GHIHHHDVRVAEHHVATLSGHS-------------QEVCGLRWAPDGRH-LASG-GND----- 171 (318)
T ss_dssp EETT-------------SEEEEEETTSSSCEEEEEECCS-------------SCEEEEEECTTSSE-EEEE-ETT-----
T ss_pred EecC-------------CceEeeecCCCceeEEEEcCcc-------------CceEEEEEcCCCCE-EEEE-ecC-----
Confidence 4433 256666665332 22222221 11336688899885 4422 111
Q ss_pred cccCccceeeeecCCCCCCCCc-----eEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecC
Q 005240 270 VEVSPRDIIYTQPAEPAEGEKP-----EILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDR 344 (706)
Q Consensus 270 ~~~~~~~~l~~~d~~~~~~~~~-----~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~ 344 (706)
..|.+||+ .+++. .........+..+.|+|++..++...... ....|.+.|..... .......
T Consensus 172 ------~~i~iwd~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~~~~i~lwd~~~~~--~~~~~~~ 239 (318)
T 4ggc_A 172 ------NLVNVWPS---APGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGT-SDRHIRIWNVCSGA--CLSAVDA 239 (318)
T ss_dssp ------SCEEEEES---SCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECT-TTCEEEEEETTTCC--EEEEEEC
T ss_pred ------cceeEEEC---CCCcccccceeeecccCCceEEEEecCCCCcEEEEEecC-CCCEEEEEeccccc--ccccccc
Confidence 24777887 43332 12223455677888999987666543222 23345566666532 1221111
Q ss_pred cccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeeecccchhhhhhhhh
Q 005240 345 VFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVA 424 (706)
Q Consensus 345 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~ 424 (706)
. .......++++++.++..... ....+..+|+.+++....+....
T Consensus 240 ~-------~~v~~~~~~~~~~~~~~~sg~-------------------~d~~i~iwd~~~~~~~~~l~gH~--------- 284 (318)
T 4ggc_A 240 H-------SQVCSILWSPHYKELISGHGF-------------------AQNQLVIWKYPTMAKVAELKGHT--------- 284 (318)
T ss_dssp S-------SCEEEEEEETTTTEEEEEECT-------------------TTCCEEEEETTTCCEEEEECCCS---------
T ss_pred e-------eeeeeeeecccccceEEEEEc-------------------CCCEEEEEECCCCcEEEEEcCCC---------
Confidence 1 011235678888887765411 11246677888776544433221
Q ss_pred hccCCCceecccCCCEEEEEEecCCCCcEEEEEECCC
Q 005240 425 LVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPL 461 (706)
Q Consensus 425 ~~~~~~~~~~s~Dg~~l~~~~~~~~~p~~v~~~~~~~ 461 (706)
.....++|||||+.|+....+ ..|.+||+..
T Consensus 285 --~~V~~l~~spdg~~l~S~s~D----~~v~iWd~~~ 315 (318)
T 4ggc_A 285 --SRVLSLTMSPDGATVASAAAD----ETLRLWRCFE 315 (318)
T ss_dssp --SCEEEEEECTTSSCEEEEETT----TEEEEECCSC
T ss_pred --CCEEEEEEcCCCCEEEEEecC----CeEEEEECCC
Confidence 222357899999877654433 3488888754
|
| >3u1t_A DMMA haloalkane dehalogenase; alpha/beta-hydrolase, hydrolase; 2.20A {Unidentified} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.2e-09 Score=110.76 Aligned_cols=113 Identities=10% Similarity=0.078 Sum_probs=79.9
Q ss_pred CCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCC
Q 005240 491 DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEG 570 (706)
Q Consensus 491 dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g 570 (706)
+|..+.....-+ -|+||++||.+.. ...+ ...+..|++.||.|+..+.+ |+|
T Consensus 17 ~g~~l~~~~~g~----------~~~vv~~HG~~~~-----------~~~~----~~~~~~l~~~g~~v~~~d~~---G~G 68 (309)
T 3u1t_A 17 EGATIAYVDEGS----------GQPVLFLHGNPTS-----------SYLW----RNIIPYVVAAGYRAVAPDLI---GMG 68 (309)
T ss_dssp TTEEEEEEEEEC----------SSEEEEECCTTCC-----------GGGG----TTTHHHHHHTTCEEEEECCT---TST
T ss_pred CCeEEEEEEcCC----------CCEEEEECCCcch-----------hhhH----HHHHHHHHhCCCEEEEEccC---CCC
Confidence 777777655422 2678999997421 1112 13456678899999996665 455
Q ss_pred CCCCc--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCC
Q 005240 571 DKLPN--DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSY 637 (706)
Q Consensus 571 ~~~~~--~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~ 637 (706)
.+... ........+|+.++++.+ +.+++.++|||+||++++.++.++|++++++|+.++..
T Consensus 69 ~S~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl~~~~~ 131 (309)
T 3u1t_A 69 DSAKPDIEYRLQDHVAYMDGFIDAL------GLDDMVLVIHDWGSVIGMRHARLNPDRVAAVAFMEALV 131 (309)
T ss_dssp TSCCCSSCCCHHHHHHHHHHHHHHH------TCCSEEEEEEEHHHHHHHHHHHHCTTTEEEEEEEEESC
T ss_pred CCCCCCcccCHHHHHHHHHHHHHHc------CCCceEEEEeCcHHHHHHHHHHhChHhheEEEEeccCC
Confidence 44332 234556677777776665 33689999999999999999999999999999998653
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.16 E-value=2.5e-08 Score=103.97 Aligned_cols=92 Identities=16% Similarity=0.057 Sum_probs=53.8
Q ss_pred ceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceee-cccCCCcc
Q 005240 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKP-LFESPDIC 84 (706)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~-lt~~~~~~ 84 (706)
.|++.|... ++.. ..++.+... .+++||||++|+.+.........+.....|.++|+++++... +.-.+...
T Consensus 32 ~v~v~D~~t----~~~~--~~i~~g~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~ 104 (361)
T 2oiz_A 32 RVHVYDYTN----GKFL--GMVPTAFNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRV 104 (361)
T ss_dssp EEEEEETTT----CCEE--EEEECCEEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBC
T ss_pred eEEEEECCC----CeEE--EEecCCCCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcccc
Confidence 567777655 6543 334555445 899999999996654211000111223568899998876543 32111100
Q ss_pred -ccccccceEEecCCcEEEEE
Q 005240 85 -LNAVFGSFVWVNNSTLLIFT 104 (706)
Q Consensus 85 -~~~~~~~~~wSpDg~~l~~~ 104 (706)
.......+.+||||++||..
T Consensus 105 ~~g~~p~~i~~spdg~~l~v~ 125 (361)
T 2oiz_A 105 QGLNYDGLFRQTTDGKFIVLQ 125 (361)
T ss_dssp CBCCCGGGEEECTTSSEEEEE
T ss_pred ccCCCcceEEECCCCCEEEEE
Confidence 01125688999999998876
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.16 E-value=7.9e-09 Score=108.01 Aligned_cols=291 Identities=9% Similarity=-0.066 Sum_probs=139.2
Q ss_pred ceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCC--Cc
Q 005240 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESP--DI 83 (706)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~--~~ 83 (706)
.|++.|++. ++. +..++.+... .+.+||||++|+.+........++.....|.++|+++.+...-...+ ..
T Consensus 48 ~v~v~D~~t----~~~--~~~i~~g~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~ 120 (373)
T 2mad_H 48 QQWVLDAGS----GSI--LGHVNGGFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPR 120 (373)
T ss_pred EEEEEECCC----CeE--EEEecCCCCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccc
Confidence 567777765 554 3446666545 99999999999776532111111122456889999876654321111 00
Q ss_pred cc-cccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceee-cCCCcccccccchhccCCchhh--hhhhhcccceE
Q 005240 84 CL-NAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQS-NEQKNIIISRMTDNLLKDEYDE--SLFDYYTTAQL 159 (706)
Q Consensus 84 ~~-~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~--~~~~~~~~~~l 159 (706)
.. ......+.|||||++|++............ . ..+..+.. ...+..+. ...++ ........+.+
T Consensus 121 ~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~vi-D-~t~~~~~~~i~~~~~~~---------~~~~~~~~~~~~~~dg~~ 189 (373)
T 2mad_H 121 FDVGPYSWMNANTPNNADLLFFQFAAGPAVGLV-V-QGGSSDDQLLSSPTCYH---------IHPGAPSTFYLLCAQGGL 189 (373)
T ss_pred cccCCCccceEECCCCCEEEEEecCCCCeEEEE-E-CCCCEEeEEcCCCceEE---------EEeCCCceEEEEcCCCCE
Confidence 00 011457899999999988642211111000 0 11111111 10000000 00000 00000011333
Q ss_pred EEEccCCCce-ecC-----CC--ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCC
Q 005240 160 VLGSLDGTAK-DFG-----TP--AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAE 231 (706)
Q Consensus 160 ~~~~l~g~~~-~lt-----~~--~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~ 231 (706)
..++++|+.. ... .. .....+.+++++..++|.+.. ..++++|+.+...+.+.......
T Consensus 190 ~~vd~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-------------~~v~vid~~~~~~~v~~~~~~~~ 256 (373)
T 2mad_H 190 AKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYS-------------GKILQADISAAGATNKAPIDALS 256 (373)
T ss_pred EEEECCCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCC-------------ceEEEEeccCCcceEeeeeeecC
Confidence 4444433221 110 00 111234566666666665532 36888888765433322211100
Q ss_pred CCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCc
Q 005240 232 DIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSL 311 (706)
Q Consensus 232 ~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~ 311 (706)
.........+.+...+.++||++. ||.... ... ........+.|+++|+ ++++...-.........+.|+|||+
T Consensus 257 ~~~~~~~~~p~g~~~~~~s~d~~~-lyV~~~-~~~-~~~~~~~~~~V~VID~---~t~~vv~~i~~g~~p~~i~~s~Dg~ 330 (373)
T 2mad_H 257 GGRKADTWRPGGWQQVAYLKSSDG-IYLLTS-EQS-AWKLHAAAKEVTSVTG---LVGQTSSQISLGHDVDAISVAQDGG 330 (373)
T ss_pred CcccccceecCceEeEEECCCCCE-EEEEec-cCC-cccccCCCCeEEEEEC---CCCEEEEEEECCCCcCeEEECCCCC
Confidence 000000011133334678999987 665432 111 1000011246999998 6666533224455688999999999
Q ss_pred eEEEEeeccccceEEEEEcCCCCC
Q 005240 312 ALVNETWYKTSQTRTWLVCPGSKD 335 (706)
Q Consensus 312 ~l~~~~~~~~~~~~l~~~d~~~~~ 335 (706)
.++|..+.. ...|.++|+++.+
T Consensus 331 ~~l~v~~~~--~~~V~ViD~~t~~ 352 (373)
T 2mad_H 331 PDLYALSAG--TEVLHIYDAGAGD 352 (373)
T ss_pred eEEEEEcCC--CCeEEEEECCCCC
Confidence 666654332 3579999999853
|
| >2y6u_A Peroxisomal membrane protein LPX1; hydrolase, putative esterase, putative lipase; HET: CME CSO; 1.90A {Saccharomyces cerevisiae} PDB: 2y6v_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=1.6e-10 Score=122.44 Aligned_cols=134 Identities=16% Similarity=0.072 Sum_probs=89.0
Q ss_pred EEccCCeEEEEEEEecCCC-CCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHH----HCCe---EE
Q 005240 487 YQRKDGVPLTATLYLPPGY-DQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFL----ARRF---AV 558 (706)
Q Consensus 487 ~~~~dg~~i~~~l~~P~~~-~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~G~---~v 558 (706)
+...||..|.+..+.|++- .....++.|+||++||.+... ..+ ...+..|+ ..|| .|
T Consensus 25 ~~~~dg~~l~~~~~g~~~~~~~~~~~~~~~vvllHG~~~~~-----------~~~----~~~~~~L~~~~~~~G~~~~~v 89 (398)
T 2y6u_A 25 LCATDRLELTYDVYTSAERQRRSRTATRLNLVFLHGSGMSK-----------VVW----EYYLPRLVAADAEGNYAIDKV 89 (398)
T ss_dssp SSTTCCCEEEEEEEEESCTTTCCTTCEEEEEEEECCTTCCG-----------GGG----GGGGGGSCCCBTTTTEEEEEE
T ss_pred ccCCCceEEEEEEEecCCCCCCCCCCCCCeEEEEcCCCCcH-----------HHH----HHHHHHHHHhhhhcCcceeEE
Confidence 4456999999999988651 001123458999999974211 111 12344566 3589 89
Q ss_pred EEcCCCCcCCCCCCCC-------chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEE
Q 005240 559 LAGPSIPIIGEGDKLP-------NDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGI 631 (706)
Q Consensus 559 ~~~~~~~~~g~g~~~~-------~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v 631 (706)
+..+.+ |+|.+.. ........+.|+.++++++...-.+++.++.++||||||.+++.++.++|++++++|
T Consensus 90 i~~D~~---G~G~S~~~~~~~~~~~~~~~~~~~dl~~~l~~~~~~~~~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv 166 (398)
T 2y6u_A 90 LLIDQV---NHGDSAVRNRGRLGTNFNWIDGARDVLKIATCELGSIDSHPALNVVIGHSMGGFQALACDVLQPNLFHLLI 166 (398)
T ss_dssp EEECCT---TSHHHHHHTTTTBCSCCCHHHHHHHHHHHHHHHTCSSTTCSEEEEEEEETHHHHHHHHHHHHCTTSCSEEE
T ss_pred EEEcCC---CCCCCCCCCccccCCCCCcchHHHHHHHHHHHhcccccccCCceEEEEEChhHHHHHHHHHhCchheeEEE
Confidence 986665 3443321 122345567777777776532112445569999999999999999999999999999
Q ss_pred eccCCCC
Q 005240 632 ARSGSYN 638 (706)
Q Consensus 632 ~~~~~~d 638 (706)
+.+|...
T Consensus 167 l~~~~~~ 173 (398)
T 2y6u_A 167 LIEPVVI 173 (398)
T ss_dssp EESCCCS
T ss_pred Eeccccc
Confidence 9988654
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.15 E-value=8.2e-09 Score=107.87 Aligned_cols=226 Identities=15% Similarity=0.108 Sum_probs=132.0
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcC--CCceee-cccCCCccccccccceEEecC--CcEEEEEec
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAE--TGEAKP-LFESPDICLNAVFGSFVWVNN--STLLIFTIP 106 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~--~g~~~~-lt~~~~~~~~~~~~~~~wSpD--g~~l~~~~~ 106 (706)
.+..++|||||++||.... ++ .|.++++. +++..+ +..+.. .+..+.|+|+ +++|+..+.
T Consensus 13 ~v~~~~~s~~~~~l~~~~~--------dg--~i~iw~~~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~~~l~s~~~ 77 (379)
T 3jrp_A 13 LIHDAVLDYYGKRLATCSS--------DK--TIKIFEVEGETHKLIDTLTGHEG-----PVWRVDWAHPKFGTILASCSY 77 (379)
T ss_dssp CEEEEEECSSSSEEEEEET--------TS--CEEEEEEETTEEEEEEEECCCSS-----CEEEEEECCGGGCSEEEEEET
T ss_pred cEEEEEEcCCCCEEEEEEC--------CC--cEEEEecCCCcceeeeEecCCCC-----cEEEEEeCCCCCCCEEEEecc
Confidence 4888999999999988653 44 44445554 333322 222222 2778999977 888876642
Q ss_pred CCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCC---ceecCCC-ceEeeee
Q 005240 107 SSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT---AKDFGTP-AVYTAVE 181 (706)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~---~~~lt~~-~~~~~~~ 181 (706)
+ +.|.++++ +++ ...+... ..+..++
T Consensus 78 d-------------------------------------------------g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~ 108 (379)
T 3jrp_A 78 D-------------------------------------------------GKVLIWKEENGRWSQIAVHAVHSASVNSVQ 108 (379)
T ss_dssp T-------------------------------------------------SCEEEEEEETTEEEEEEEECCCSSCEEEEE
T ss_pred C-------------------------------------------------CEEEEEEcCCCceeEeeeecCCCcceEEEE
Confidence 1 46777777 443 2233333 6788999
Q ss_pred eCCC--CcEEEEEeeccCcccccccccccceEEEEecCCCee---EEcccCCCCCCCCcccCccCCCCcceeeec-----
Q 005240 182 PSPD--QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV---RELCDLPPAEDIPVCYNSVREGMRSISWRA----- 251 (706)
Q Consensus 182 ~SpD--G~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~l~~~~~~~~~p~~~~~~~~g~~~~~~sp----- 251 (706)
|+|+ |+.|+..+.. ..|.+|++..... ..+.... ..+..+.|+|
T Consensus 109 ~~~~~~~~~l~~~~~d-------------~~i~v~d~~~~~~~~~~~~~~~~-------------~~v~~~~~~~~~~~~ 162 (379)
T 3jrp_A 109 WAPHEYGPLLLVASSD-------------GKVSVVEFKENGTTSPIIIDAHA-------------IGVNSASWAPATIEE 162 (379)
T ss_dssp ECCGGGCSEEEEEETT-------------SEEEEEECCTTSCCCEEEEECCT-------------TCEEEEEECCCC---
T ss_pred eCCCCCCCEEEEecCC-------------CcEEEEecCCCCceeeEEecCCC-------------CceEEEEEcCccccc
Confidence 9999 8888776544 3799999985521 1221111 1244778999
Q ss_pred --------CCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCce-----EEeecccccccceecCC---CceEEE
Q 005240 252 --------DKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPE-----ILHKLDLRFRSVSWCDD---SLALVN 315 (706)
Q Consensus 252 --------dg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~-----~l~~~~~~~~~~~wspD---g~~l~~ 315 (706)
|++. |+... .+ ..|++||+ .++... .+..+...+..+.|+|| +..|+.
T Consensus 163 ~~~~~~~~~~~~-l~~~~-~d-----------g~i~i~d~---~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s 226 (379)
T 3jrp_A 163 DGEHNGTKESRK-FVTGG-AD-----------NLVKIWKY---NSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLAS 226 (379)
T ss_dssp -------CTTCE-EEEEE-TT-----------SCEEEEEE---ETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEE
T ss_pred cccccCCCCCCE-EEEEe-CC-----------CeEEEEEe---cCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEE
Confidence 5664 44321 11 24778877 333322 23345667889999999 787776
Q ss_pred EeeccccceEEEEEcCCCCCCCc-eeeecCcccccccCCCCCceEeccCCCEEEEee
Q 005240 316 ETWYKTSQTRTWLVCPGSKDVAP-RVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 316 ~~~~~~~~~~l~~~d~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 371 (706)
.+. ++..+||.+ .++.... ..+..... .......+.|+|||++|+...
T Consensus 227 ~~~--dg~i~iwd~--~~~~~~~~~~~~~~~~----~~~~v~~~~~s~~g~~l~~~~ 275 (379)
T 3jrp_A 227 VSQ--DRTCIIWTQ--DNEQGPWKKTLLKEEK----FPDVLWRASWSLSGNVLALSG 275 (379)
T ss_dssp EET--TSCEEEEEE--SSTTSCCEEEESSSSC----CSSCEEEEEECSSSCCEEEEE
T ss_pred EeC--CCEEEEEeC--CCCCccceeeeecccc----CCCcEEEEEEcCCCCEEEEec
Confidence 542 234455544 4432111 12211100 000123478999999888765
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.14 E-value=1.3e-08 Score=114.03 Aligned_cols=221 Identities=10% Similarity=0.020 Sum_probs=136.6
Q ss_pred cceeEeecCCCCCCC-----CeeeeecCCCCCc-ccceeeCC--CCCeEEEEeeccccccccCCceeEEEEEcCCC----
Q 005240 5 TGIGIHRLLPDDSLG-----PEKEVHGYPDGAK-INFVSWSP--DGKRIAFSVRVDEEDNVSSCKLRVWIADAETG---- 72 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g-----~~~~i~~~~~~~~-~~~~~~SP--DG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g---- 72 (706)
..|.|+++.. + ..+.+. ..... +..++||| ||++||.... + ..|.++++.++
T Consensus 39 ~~v~v~~~~~----~~~~~~~~~~~~--~h~~~~v~~~~~sp~~~~~~l~s~~~--------d--g~v~vw~~~~~~~~~ 102 (615)
T 1pgu_A 39 KSAFVRCLDD----GDSKVPPVVQFT--GHGSSVVTTVKFSPIKGSQYLCSGDE--------S--GKVIVWGWTFDKESN 102 (615)
T ss_dssp TEEEEEECCS----SCCSSCSEEEEC--TTTTSCEEEEEECSSTTCCEEEEEET--------T--SEEEEEEEEEEGGGT
T ss_pred CeEEEEECCC----CCCccccceEEe--cCCCceEEEEEECcCCCCCEEEEecC--------C--CEEEEEeCCCCcccc
Confidence 3578888876 4 222332 12235 78999999 9999988653 3 45666666544
Q ss_pred --ceee---cccCCCccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchh
Q 005240 73 --EAKP---LFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYD 147 (706)
Q Consensus 73 --~~~~---lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 147 (706)
+.+. +..... .+..+.|+|||++|+.......
T Consensus 103 ~~~~~~~~~~~~~~~-----~v~~~~~s~~~~~l~~~~~~~~-------------------------------------- 139 (615)
T 1pgu_A 103 SVEVNVKSEFQVLAG-----PISDISWDFEGRRLCVVGEGRD-------------------------------------- 139 (615)
T ss_dssp EEEEEEEEEEECCSS-----CEEEEEECTTSSEEEEEECCSS--------------------------------------
T ss_pred cccccccchhhcccc-----cEEEEEEeCCCCEEEEeccCCC--------------------------------------
Confidence 2222 221222 3778999999999887753210
Q ss_pred hhhhhhcccceEEEEccCCCceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEE-cc
Q 005240 148 ESLFDYYTTAQLVLGSLDGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRE-LC 225 (706)
Q Consensus 148 ~~~~~~~~~~~l~~~~l~g~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-l~ 225 (706)
....|++++.......+... ..+..++|+|+|+.++++.... ..|.+|++...+... +.
T Consensus 140 -------~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------------~~v~vwd~~~~~~~~~~~ 200 (615)
T 1pgu_A 140 -------NFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDD------------GSVVFYQGPPFKFSASDR 200 (615)
T ss_dssp -------CSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETT------------TEEEEEETTTBEEEEEEC
T ss_pred -------CccEEEEEECCCcceeeecCCccEEEEEECCCCCcEEEEEeCC------------CcEEEEeCCCcceeeeec
Confidence 11567777733344445444 6788999999999554554432 479999998665433 32
Q ss_pred cCCCCCCCCcccCccCCCCcceeeecC-CCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEe-----eccc
Q 005240 226 DLPPAEDIPVCYNSVREGMRSISWRAD-KPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH-----KLDL 299 (706)
Q Consensus 226 ~~~~~~~~p~~~~~~~~g~~~~~~spd-g~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~-----~~~~ 299 (706)
..... . ..+..+.|+|| ++. |+... . ...|++||+ .+++..... ....
T Consensus 201 ~~~~~-~---------~~v~~~~~~~~~~~~-l~~~~-~-----------dg~i~vwd~---~~~~~~~~~~~~~~~~~~ 254 (615)
T 1pgu_A 201 THHKQ-G---------SFVRDVEFSPDSGEF-VITVG-S-----------DRKISCFDG---KSGEFLKYIEDDQEPVQG 254 (615)
T ss_dssp SSSCT-T---------CCEEEEEECSTTCCE-EEEEE-T-----------TCCEEEEET---TTCCEEEECCBTTBCCCS
T ss_pred ccCCC-C---------ceEEEEEECCCCCCE-EEEEe-C-----------CCeEEEEEC---CCCCEeEEecccccccCC
Confidence 22110 0 02447899999 875 54332 1 124888888 555544433 5567
Q ss_pred ccccceecCCCceEEEEeeccccceEEEEEcCCCC
Q 005240 300 RFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK 334 (706)
Q Consensus 300 ~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~ 334 (706)
.+..+.|+ |++.|+..+. ...|.++|+.++
T Consensus 255 ~v~~~~~~-~~~~l~~~~~----d~~i~~wd~~~~ 284 (615)
T 1pgu_A 255 GIFALSWL-DSQKFATVGA----DATIRVWDVTTS 284 (615)
T ss_dssp CEEEEEES-SSSEEEEEET----TSEEEEEETTTT
T ss_pred ceEEEEEc-CCCEEEEEcC----CCcEEEEECCCC
Confidence 78899999 9998887652 234777777763
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.2e-08 Score=116.71 Aligned_cols=217 Identities=13% Similarity=0.102 Sum_probs=132.6
Q ss_pred ceeEeecCCCCCC-C-CeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeec-ccCCC
Q 005240 6 GIGIHRLLPDDSL-G-PEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPL-FESPD 82 (706)
Q Consensus 6 ~~~~~~~~~~~~~-g-~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l-t~~~~ 82 (706)
.|.|.++..+... + ..+.++++. ..+..+.|||||++|+..+. ...|.++|+.+++..+. ..+..
T Consensus 406 ~i~~W~~~~~~~~~~~~~~~~~~h~--~~v~~v~~s~~g~~l~sgs~----------Dg~v~vwd~~~~~~~~~~~~h~~ 473 (694)
T 3dm0_A 406 SIILWKLTKDDKAYGVAQRRLTGHS--HFVEDVVLSSDGQFALSGSW----------DGELRLWDLAAGVSTRRFVGHTK 473 (694)
T ss_dssp EEEEEECCCSTTCSCEEEEEEECCS--SCEEEEEECTTSSEEEEEET----------TSEEEEEETTTTEEEEEEECCSS
T ss_pred cEEEEEccCCCcccccccceecCCC--CcEEEEEECCCCCEEEEEeC----------CCcEEEEECCCCcceeEEeCCCC
Confidence 5788888762211 1 122344332 24888999999999987642 35788889888765443 32322
Q ss_pred ccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEE
Q 005240 83 ICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLG 162 (706)
Q Consensus 83 ~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~ 162 (706)
.+..+.|+|||++|+..+.+ +.|.++
T Consensus 474 -----~v~~~~~s~~~~~l~s~s~D-------------------------------------------------~~i~iw 499 (694)
T 3dm0_A 474 -----DVLSVAFSLDNRQIVSASRD-------------------------------------------------RTIKLW 499 (694)
T ss_dssp -----CEEEEEECTTSSCEEEEETT-------------------------------------------------SCEEEE
T ss_pred -----CEEEEEEeCCCCEEEEEeCC-------------------------------------------------CEEEEE
Confidence 27789999999988876431 456666
Q ss_pred ccCCC-ceecCC----C-ceEeeeeeCCCCcE-EEEEeeccCcccccccccccceEEEEecCCCeeEE-cccCCCCCCCC
Q 005240 163 SLDGT-AKDFGT----P-AVYTAVEPSPDQKY-VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRE-LCDLPPAEDIP 234 (706)
Q Consensus 163 ~l~g~-~~~lt~----~-~~~~~~~~SpDG~~-i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-l~~~~~~~~~p 234 (706)
++.+. ...+.. . ..+..++|+|++.. ++++.... ..|.+||+.+.+... +..+.
T Consensus 500 d~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d------------~~v~vwd~~~~~~~~~~~~h~------ 561 (694)
T 3dm0_A 500 NTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWD------------KTVKVWNLSNCKLRSTLAGHT------ 561 (694)
T ss_dssp CTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETT------------SCEEEEETTTCCEEEEECCCS------
T ss_pred ECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCC------------CeEEEEECCCCcEEEEEcCCC------
Confidence 76442 222221 1 45789999999842 33333321 379999998665443 32221
Q ss_pred cccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEE
Q 005240 235 VCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALV 314 (706)
Q Consensus 235 ~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~ 314 (706)
..+..++|+|||+. |+... . .+.|.+||+ .+++..........+..+.|+||+..|+
T Consensus 562 -------~~v~~v~~spdg~~-l~sg~-~-----------Dg~i~iwd~---~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 618 (694)
T 3dm0_A 562 -------GYVSTVAVSPDGSL-CASGG-K-----------DGVVLLWDL---AEGKKLYSLEANSVIHALCFSPNRYWLC 618 (694)
T ss_dssp -------SCEEEEEECTTSSE-EEEEE-T-----------TSBCEEEET---TTTEEEECCBCSSCEEEEEECSSSSEEE
T ss_pred -------CCEEEEEEeCCCCE-EEEEe-C-----------CCeEEEEEC---CCCceEEEecCCCcEEEEEEcCCCcEEE
Confidence 12457899999986 44221 1 124778888 4443322223355677889999998777
Q ss_pred EEeeccccceEEEEEcCCCC
Q 005240 315 NETWYKTSQTRTWLVCPGSK 334 (706)
Q Consensus 315 ~~~~~~~~~~~l~~~d~~~~ 334 (706)
... .. .|.++|+.++
T Consensus 619 ~~~-~~----~i~iwd~~~~ 633 (694)
T 3dm0_A 619 AAT-EH----GIKIWDLESK 633 (694)
T ss_dssp EEE-TT----EEEEEETTTT
T ss_pred EEc-CC----CEEEEECCCC
Confidence 643 21 2677777763
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.4e-08 Score=118.94 Aligned_cols=82 Identities=7% Similarity=0.020 Sum_probs=51.0
Q ss_pred cceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecc------
Q 005240 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLF------ 78 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt------ 78 (706)
..|.|+|+.. ++..... .....+..++|||||++|+.... ...|.++|+++++.....
T Consensus 79 ~~v~lWd~~~----~~~~~~~--~~~~~V~~v~~sp~g~~l~sgs~----------dg~V~lwd~~~~~~~~~~i~~~~~ 142 (902)
T 2oaj_A 79 DTVYVLSLYS----QKVLTTV--FVPGKITSIDTDASLDWMLIGLQ----------NGSMIVYDIDRDQLSSFKLDNLQK 142 (902)
T ss_dssp CEEEEEETTT----CSEEEEE--ECSSCEEEEECCTTCSEEEEEET----------TSCEEEEETTTTEEEEEEECCHHH
T ss_pred CeEEEEECCC----CcEEEEE--cCCCCEEEEEECCCCCEEEEEcC----------CCcEEEEECCCCccccceeccccc
Confidence 4688888876 5443222 22235889999999999987642 356777888887653111
Q ss_pred ---cCCCccccccccceEEecCC-cEEEEE
Q 005240 79 ---ESPDICLNAVFGSFVWVNNS-TLLIFT 104 (706)
Q Consensus 79 ---~~~~~~~~~~~~~~~wSpDg-~~l~~~ 104 (706)
.... ....+..++|+|++ ..|+..
T Consensus 143 ~~~~~~~--h~~~V~sl~~sp~~~~~l~~g 170 (902)
T 2oaj_A 143 SSFFPAA--RLSPIVSIQWNPRDIGTVLIS 170 (902)
T ss_dssp HHTCSSS--CCCCCCEEEEETTEEEEEEEE
T ss_pred ccccccc--CCCCeEEEEEccCCCCEEEEE
Confidence 0011 11237789999975 455544
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.13 E-value=1.4e-08 Score=104.48 Aligned_cols=145 Identities=8% Similarity=0.025 Sum_probs=88.8
Q ss_pred ceEEEEccC-CCceecC-CC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCC
Q 005240 157 AQLVLGSLD-GTAKDFG-TP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDI 233 (706)
Q Consensus 157 ~~l~~~~l~-g~~~~lt-~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~ 233 (706)
..|++++++ ++.+.+. .. ..+..++++|||+.++....... ....|++++.+++..+.+.......
T Consensus 66 ~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~---------~~~~i~~~d~~~~~~~~~~~~~~~~-- 134 (333)
T 2dg1_A 66 GNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFK---------STGGIFAATENGDNLQDIIEDLSTA-- 134 (333)
T ss_dssp CEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSS---------SCCEEEEECTTSCSCEEEECSSSSC--
T ss_pred CEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCC---------CCceEEEEeCCCCEEEEEEccCccC--
Confidence 579999984 5666554 22 56889999999975543322200 0247999999987766433211110
Q ss_pred CcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceE
Q 005240 234 PVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLAL 313 (706)
Q Consensus 234 p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l 313 (706)
..+..+.++|||+ |++....... ......|++++. ++++.+.+.........+.|+|||+.|
T Consensus 135 --------~~~~~i~~d~~g~--l~v~~~~~~~-----~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~i~~~~dg~~l 196 (333)
T 2dg1_A 135 --------YCIDDMVFDSKGG--FYFTDFRGYS-----TNPLGGVYYVSP---DFRTVTPIIQNISVANGIALSTDEKVL 196 (333)
T ss_dssp --------CCEEEEEECTTSC--EEEEECCCBT-----TBCCEEEEEECT---TSCCEEEEEEEESSEEEEEECTTSSEE
T ss_pred --------CcccceEECCCCC--EEEEeccccc-----cCCCceEEEEeC---CCCEEEEeecCCCcccceEECCCCCEE
Confidence 1234778999986 5554321100 011235888887 666766665444456778999999988
Q ss_pred EEEeeccccceEEEEEcCCC
Q 005240 314 VNETWYKTSQTRTWLVCPGS 333 (706)
Q Consensus 314 ~~~~~~~~~~~~l~~~d~~~ 333 (706)
++... ....|+++++++
T Consensus 197 ~v~~~---~~~~i~~~d~~~ 213 (333)
T 2dg1_A 197 WVTET---TANRLHRIALED 213 (333)
T ss_dssp EEEEG---GGTEEEEEEECT
T ss_pred EEEeC---CCCeEEEEEecC
Confidence 77542 234688888754
|
| >2h7c_A Liver carboxylesterase 1; enzyme, cholesteryl esterase, hydrolase; HET: NAG NDG SIA COA; 2.00A {Homo sapiens} SCOP: c.69.1.1 PDB: 2dqy_A* 2dr0_A* 2dqz_A* 1mx1_A* 1mx5_A* 1mx9_A* 4ab1_A* 1ya4_A* 1yah_A* 1yaj_A* 1ya8_A* 2hrr_A* 2hrq_A* 3k9b_A* 1k4y_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=8.6e-11 Score=128.79 Aligned_cols=132 Identities=20% Similarity=0.195 Sum_probs=93.9
Q ss_pred ccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHH-HCCeEEEEcCCC-Cc
Q 005240 489 RKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFL-ARRFAVLAGPSI-PI 566 (706)
Q Consensus 489 ~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~G~~v~~~~~~-~~ 566 (706)
+.|+..+ .+|.|....+++ ++|+||++|||++..++. ..+ .. ..|+ ..|++|+.+++| +.
T Consensus 95 ~edcl~l--nv~~P~~~~~~~--~~Pv~v~iHGG~~~~g~~--------~~~-----~~-~~la~~~g~vvv~~nYRlg~ 156 (542)
T 2h7c_A 95 SEDCLYL--NIYTPADLTKKN--RLPVMVWIHGGGLMVGAA--------STY-----DG-LALAAHENVVVVTIQYRLGI 156 (542)
T ss_dssp ESCCCEE--EEEECSCTTSCC--CEEEEEEECCSTTTSCCS--------TTS-----CC-HHHHHHHTCEEEEECCCCHH
T ss_pred CCCCcEE--EEEECCCCCCCC--CCCEEEEECCCcccCCCc--------ccc-----CH-HHHHhcCCEEEEecCCCCcc
Confidence 4577555 488998754322 589999999998753222 111 11 2345 489999998888 55
Q ss_pred CCCCCCCCchhhHHHHHHHHHHHHHHHHHc--C-CCCCCcEEEEEechHHHHHHHHHHh--CCCceeEEEeccCCCC
Q 005240 567 IGEGDKLPNDRFVEQLVSSAEAAVEEVVRR--G-VADPSRIAVGGHSYGAFMTAHLLAH--APHLFCCGIARSGSYN 638 (706)
Q Consensus 567 ~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~--~-~id~~~i~i~G~S~GG~~a~~~~~~--~p~~~~a~v~~~~~~d 638 (706)
.|++.........+..+.|+..|++|+.+. . -.||+||.|+|+|+||+++++++.. .+.+|+++|+.+|...
T Consensus 157 ~gf~~~~~~~~~~n~gl~D~~~al~wv~~ni~~fggDp~~Vtl~G~SaGg~~~~~~~~~~~~~~lf~~ai~~Sg~~~ 233 (542)
T 2h7c_A 157 WGFFSTGDEHSRGNWGHLDQVAALRWVQDNIASFGGNPGSVTIFGESAGGESVSVLVLSPLAKNLFHRAISESGVAL 233 (542)
T ss_dssp HHHCCCSSTTCCCCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTSCSEEEEESCCTT
T ss_pred ccCCCCCcccCccchhHHHHHHHHHHHHHHHHHcCCCccceEEEEechHHHHHHHHHhhhhhhHHHHHHhhhcCCcc
Confidence 455433222122234578999999999885 2 3799999999999999999999987 3579999999999765
|
| >3r0v_A Alpha/beta hydrolase fold protein; structural genomics, PSI-biology, protein structure initiati alpha/beta hydrolase; HET: MSE; 1.38A {Sphaerobacter thermophilus} | Back alignment and structure |
|---|
Probab=99.12 E-value=2.6e-09 Score=105.42 Aligned_cols=116 Identities=16% Similarity=0.053 Sum_probs=80.3
Q ss_pred EEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCC
Q 005240 486 KYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIP 565 (706)
Q Consensus 486 ~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~ 565 (706)
++...||..+.....-+ -|.||++||.+.. ...+ ...+..|+ .||.|+..+.+
T Consensus 6 ~~~~~~g~~l~~~~~g~----------~~~vv~lHG~~~~-----------~~~~----~~~~~~l~-~~~~vi~~d~~- 58 (262)
T 3r0v_A 6 TVPSSDGTPIAFERSGS----------GPPVVLVGGALST-----------RAGG----APLAERLA-PHFTVICYDRR- 58 (262)
T ss_dssp EEECTTSCEEEEEEEEC----------SSEEEEECCTTCC-----------GGGG----HHHHHHHT-TTSEEEEECCT-
T ss_pred eEEcCCCcEEEEEEcCC----------CCcEEEECCCCcC-----------hHHH----HHHHHHHh-cCcEEEEEecC-
Confidence 35566888888666531 2568889996421 0111 23345555 89999996665
Q ss_pred cCCCCCCCCc-hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCC
Q 005240 566 IIGEGDKLPN-DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYN 638 (706)
Q Consensus 566 ~~g~g~~~~~-~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d 638 (706)
|+|.+... ........+|+.++++.+ + .++.++|||+||++++.++.++| +++++++.+|...
T Consensus 59 --G~G~S~~~~~~~~~~~~~~~~~~~~~l------~-~~~~l~G~S~Gg~ia~~~a~~~p-~v~~lvl~~~~~~ 122 (262)
T 3r0v_A 59 --GRGDSGDTPPYAVEREIEDLAAIIDAA------G-GAAFVFGMSSGAGLSLLAAASGL-PITRLAVFEPPYA 122 (262)
T ss_dssp --TSTTCCCCSSCCHHHHHHHHHHHHHHT------T-SCEEEEEETHHHHHHHHHHHTTC-CEEEEEEECCCCC
T ss_pred --CCcCCCCCCCCCHHHHHHHHHHHHHhc------C-CCeEEEEEcHHHHHHHHHHHhCC-CcceEEEEcCCcc
Confidence 45555332 223455667777666654 3 68999999999999999999999 9999999998654
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.11 E-value=5.8e-08 Score=100.25 Aligned_cols=312 Identities=13% Similarity=0.110 Sum_probs=163.3
Q ss_pred eeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecC-CCCCCCC
Q 005240 36 VSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPS-SRRDPPK 114 (706)
Q Consensus 36 ~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~-~~~~~~~ 114 (706)
..-.|||++| |+.+. ........|+++|+++++...-...... .. +.+||||++||+.... .+...
T Consensus 38 ~~~~pd~~~v-yV~~~----~~~~~~~~V~ViD~~t~~v~~~I~vG~~-----P~-va~spDG~~lyVan~~~~r~~~-- 104 (386)
T 3sjl_D 38 EAPAPDARRV-YVNDP----AHFAAVTQQFVIDGEAGRVIGMIDGGFL-----PN-PVVADDGSFIAHASTVFSRIAR-- 104 (386)
T ss_dssp CCCCCCTTEE-EEEEC----GGGCSSEEEEEEETTTTEEEEEEEECSS-----CE-EEECTTSSCEEEEEEEEEETTE--
T ss_pred eccCCCCCEE-EEEcC----cccCCCCEEEEEECCCCeEEEEEECCCC-----Cc-EEECCCCCEEEEEccccccccc--
Confidence 3447999998 55431 0001247999999998875443222221 33 8999999998876310 00000
Q ss_pred CCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCCc-eecCCC--------ceEeeeeeCC
Q 005240 115 KTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTA-KDFGTP--------AVYTAVEPSP 184 (706)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~-~~lt~~--------~~~~~~~~Sp 184 (706)
......|.++|. +++. ..+.-+ .....+.+||
T Consensus 105 --------------------------------------G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~sp 146 (386)
T 3sjl_D 105 --------------------------------------GERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTP 146 (386)
T ss_dssp --------------------------------------EEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECT
T ss_pred --------------------------------------CCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcC
Confidence 001256888898 4443 233211 2455789999
Q ss_pred CCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCc-ceeeecCCCceEEEEEec
Q 005240 185 DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMR-SISWRADKPSTLYWVEAQ 263 (706)
Q Consensus 185 DG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~-~~~~spdg~~~l~~~~~~ 263 (706)
||++|++..... ...|.++|+.+.++..-...++... .+ +.+.+ .+..++||+ ++++...
T Consensus 147 DGk~lyVan~~~-----------~~~VsVID~~t~~vv~tI~v~g~~~---~~---P~g~~~~~~~~~DG~--~~~v~~~ 207 (386)
T 3sjl_D 147 DGKTLLFYQFSP-----------APAVGVVDLEGKAFKRMLDVPDCYH---IF---PTAPDTFFMHCRDGS--LAKVAFG 207 (386)
T ss_dssp TSSEEEEEECSS-----------SCEEEEEETTTTEEEEEEECCSEEE---EE---EEETTEEEEEETTSC--EEEEECC
T ss_pred CCCEEEEEEcCC-----------CCeEEEEECCCCcEEEEEECCCcce---ee---cCCCceeEEECCCCC--EEEEECC
Confidence 999998765321 2479999999776543222222100 00 02222 347788887 3434221
Q ss_pred cCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceec-CCCceEEEEeeccccceEEEEEcCCCCCCCceeee
Q 005240 264 DRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWC-DDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLF 342 (706)
Q Consensus 264 ~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~ws-pDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~ 342 (706)
..+.... .+.. ..+. ........+.|. +||+.+ |.+. ..++|.+|+.+.. +..+-
T Consensus 208 ~~g~v~~---~~~~--~~~~------------~~~~~~~~~~~~~~dG~~~-~vs~----~g~V~v~d~~~~~--~~v~~ 263 (386)
T 3sjl_D 208 TEGTPEI---THTE--VFHP------------EDEFLINHPAYSQKAGRLV-WPTY----TGKIHQIDLSSGD--AKFLP 263 (386)
T ss_dssp SSSCCEE---EECC--CCSC------------TTSCBCSCCEEETTTTEEE-EEBT----TSEEEEEECTTSS--CEECC
T ss_pred CCCeEEE---eecc--eecc------------ccccccccceeEcCCCcEE-EEeC----CCEEEEEECCCCc--ceeec
Confidence 1111100 0000 0000 011122345674 688644 4432 2369999998742 22221
Q ss_pred cCcc-cc----cccCCCC-CceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeeecccch
Q 005240 343 DRVF-EN----VYSDPGS-PMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNRE 416 (706)
Q Consensus 343 ~~~~-~~----~~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~ 416 (706)
...+ .. ....|+. ..+..+++++++++..... ..+.+. ..-.+++.+|+++++..+-+.....
T Consensus 264 ~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~----------~~~~hk-~~~~~V~viD~~t~kv~~~i~vg~~ 332 (386)
T 3sjl_D 264 AVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQR----------DEWRHK-TASRFVVVLDAKTGERLAKFEMGHE 332 (386)
T ss_dssp CEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEEC----------CTTCTT-SCEEEEEEEETTTCCEEEEEEEEEE
T ss_pred ceeccccccccccccCCCcceeeECCCCCeEEEEeccc----------cccccC-CCCCEEEEEECCCCeEEEEEECCCC
Confidence 1110 00 0011222 2345577888777754210 011111 1123689999999987666554321
Q ss_pred hhhhhhhhhccCCCceecccCCCEEEEEEecCCCCcEEEEEECCCCceeE
Q 005240 417 KYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQ 466 (706)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~p~~v~~~~~~~~~~~~ 466 (706)
.+...+|+|++.++|+.+. .-..|.++|.++++..+
T Consensus 333 ------------~~~lavs~D~~~~ly~tn~--~~~~VsViD~~t~k~~~ 368 (386)
T 3sjl_D 333 ------------IDSINVSQDEKPLLYALST--GDKTLYIHDAESGEELR 368 (386)
T ss_dssp ------------ECEEEECSSSSCEEEEEET--TTTEEEEEETTTCCEEE
T ss_pred ------------cceEEECCCCCeEEEEEcC--CCCeEEEEECCCCcEEE
Confidence 2357899999866666443 24568999999887544
|
| >3hss_A Putative bromoperoxidase; alpha beta hydrolase, oxidoreductase, hydrolase; 1.90A {Mycobacterium tuberculosis} PDB: 3e3a_A 3hys_A 3hzo_A | Back alignment and structure |
|---|
Probab=99.11 E-value=6.8e-10 Score=111.89 Aligned_cols=103 Identities=19% Similarity=0.225 Sum_probs=74.5
Q ss_pred ceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCCCCc-hhhHHHHHHHHHHHHH
Q 005240 513 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPN-DRFVEQLVSSAEAAVE 591 (706)
Q Consensus 513 ~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~-~~~~~~~~~D~~~~~~ 591 (706)
.|.||++||.+.. ...+. ......|++.||.|+..+.+|. |.+... ........+|+..+++
T Consensus 43 ~~~vv~lHG~~~~-----------~~~~~---~~~~~~l~~~g~~vi~~D~~G~---G~s~~~~~~~~~~~~~~~~~~l~ 105 (293)
T 3hss_A 43 GDPVVFIAGRGGA-----------GRTWH---PHQVPAFLAAGYRCITFDNRGI---GATENAEGFTTQTMVADTAALIE 105 (293)
T ss_dssp SEEEEEECCTTCC-----------GGGGT---TTTHHHHHHTTEEEEEECCTTS---GGGTTCCSCCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCc-----------hhhcc---hhhhhhHhhcCCeEEEEccCCC---CCCCCcccCCHHHHHHHHHHHHH
Confidence 3789999997421 11111 1246677899999999777643 433332 2235566777777777
Q ss_pred HHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCC
Q 005240 592 EVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYN 638 (706)
Q Consensus 592 ~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d 638 (706)
++ +.+++.++|||+||.+++.++.++|++++++++.+|...
T Consensus 106 ~l------~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 146 (293)
T 3hss_A 106 TL------DIAPARVVGVSMGAFIAQELMVVAPELVSSAVLMATRGR 146 (293)
T ss_dssp HH------TCCSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSS
T ss_pred hc------CCCcEEEEeeCccHHHHHHHHHHChHHHHhhheeccccc
Confidence 66 346899999999999999999999999999999998643
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.11 E-value=2.4e-08 Score=100.93 Aligned_cols=258 Identities=8% Similarity=-0.010 Sum_probs=147.8
Q ss_pred CCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEec
Q 005240 17 SLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVN 96 (706)
Q Consensus 17 ~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSp 96 (706)
.+.+.+.+.. .......|+|+|||+.|+++.. ....|++++++++ .+.+..... .+..+.++|
T Consensus 16 ~~~~~~~l~~--~~~~~eg~~~d~~g~~l~~~~~---------~~~~i~~~~~~~~-~~~~~~~~~-----~~~~l~~~~ 78 (296)
T 3e5z_A 16 AGAEARRLAD--GFTWTEGPVYVPARSAVIFSDV---------RQNRTWAWSDDGQ-LSPEMHPSH-----HQNGHCLNK 78 (296)
T ss_dssp TTCCCEEEEC--CCSSEEEEEEEGGGTEEEEEEG---------GGTEEEEEETTSC-EEEEESSCS-----SEEEEEECT
T ss_pred CCCcEEEEec--CCccccCCeEeCCCCEEEEEeC---------CCCEEEEEECCCC-eEEEECCCC-----CcceeeECC
Confidence 3455566652 2234668999999998888753 3368999999988 665543322 256789999
Q ss_pred CCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCCceecCCC-
Q 005240 97 NSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP- 174 (706)
Q Consensus 97 Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~~~lt~~- 174 (706)
||+.++... ....|++++. +|+.+.+...
T Consensus 79 dg~l~v~~~-------------------------------------------------~~~~i~~~d~~~g~~~~~~~~~ 109 (296)
T 3e5z_A 79 QGHLIACSH-------------------------------------------------GLRRLERQREPGGEWESIADSF 109 (296)
T ss_dssp TCCEEEEET-------------------------------------------------TTTEEEEECSTTCCEEEEECEE
T ss_pred CCcEEEEec-------------------------------------------------CCCeEEEEcCCCCcEEEEeecc
Confidence 999644331 1157888898 7766655332
Q ss_pred -----ceEeeeeeCCCCcEEEEEeeccCc--cc---ccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCC
Q 005240 175 -----AVYTAVEPSPDQKYVLITSMHRPY--SY---KVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGM 244 (706)
Q Consensus 175 -----~~~~~~~~SpDG~~i~~~~~~~~~--~~---~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~ 244 (706)
..+..++++|||+ |+++...... .. ..........|+.++.+ ++.+.+.... ..+
T Consensus 110 ~~~~~~~~~~i~~d~~G~-l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~-------------~~~ 174 (296)
T 3e5z_A 110 EGKKLNSPNDVCLAPDGS-LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDR-------------VKP 174 (296)
T ss_dssp TTEECCCCCCEEECTTSC-EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCC-------------SSE
T ss_pred CCCCCCCCCCEEECCCCC-EEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCC-------------CCC
Confidence 2345689999996 5554221000 00 00000012478888877 4444443221 113
Q ss_pred cceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCc---eEEee-cccccccceecCCCceEEEEeecc
Q 005240 245 RSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP---EILHK-LDLRFRSVSWCDDSLALVNETWYK 320 (706)
Q Consensus 245 ~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~---~~l~~-~~~~~~~~~wspDg~~l~~~~~~~ 320 (706)
..++|+|||+. | +.. .. ...|++++++ ..+.. ..+.. .......+.+++||+.++ +.
T Consensus 175 ~gi~~s~dg~~-l-v~~-~~----------~~~i~~~~~~--~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v-~~--- 235 (296)
T 3e5z_A 175 NGLAFLPSGNL-L-VSD-TG----------DNATHRYCLN--ARGETEYQGVHFTVEPGKTDGLRVDAGGLIWA-SA--- 235 (296)
T ss_dssp EEEEECTTSCE-E-EEE-TT----------TTEEEEEEEC--SSSCEEEEEEEECCSSSCCCSEEEBTTSCEEE-EE---
T ss_pred ccEEECCCCCE-E-EEe-CC----------CCeEEEEEEC--CCCcCcCCCeEeeCCCCCCCeEEECCCCCEEE-Ec---
Confidence 36899999986 4 442 11 1247788772 24444 22221 233456788999997433 32
Q ss_pred ccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEe-ccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceee
Q 005240 321 TSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTR-TSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDL 399 (706)
Q Consensus 321 ~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~ 399 (706)
...|+++++++. ....+ .... +...+.+ ++||+.|+++... .|++
T Consensus 236 --~~~v~~~~~~g~--~~~~~-~~~~-------~~~~~~f~~~d~~~L~v~t~~----------------------~l~~ 281 (296)
T 3e5z_A 236 --GDGVHVLTPDGD--ELGRV-LTPQ-------TTSNLCFGGPEGRTLYMTVST----------------------EFWS 281 (296)
T ss_dssp --TTEEEEECTTSC--EEEEE-ECSS-------CCCEEEEESTTSCEEEEEETT----------------------EEEE
T ss_pred --CCeEEEECCCCC--EEEEE-ECCC-------CceeEEEECCCCCEEEEEcCC----------------------eEEE
Confidence 235889998752 22222 1110 1123556 5888888776521 4778
Q ss_pred eecCCCcee
Q 005240 400 FDINTGSKE 408 (706)
Q Consensus 400 ~d~~~g~~~ 408 (706)
++.++.+.+
T Consensus 282 ~~~~~~~~~ 290 (296)
T 3e5z_A 282 IETNVRGLE 290 (296)
T ss_dssp EECSCCBCC
T ss_pred EEccccccc
Confidence 888776543
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.11 E-value=1.9e-08 Score=103.55 Aligned_cols=191 Identities=16% Similarity=0.198 Sum_probs=110.4
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCcee--e-cccCCCccccccccceEEecCCcEEEEEecCC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAK--P-LFESPDICLNAVFGSFVWVNNSTLLIFTIPSS 108 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~--~-lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~ 108 (706)
.+..+.|||| .||.... + ..|.++++.++... . +..... ...+..+.|+|||++|+..+.+
T Consensus 16 ~v~~~~~s~~--~las~~~--------D--~~i~lw~~~~~~~~~~~~~~~~~h---~~~v~~v~~sp~~~~las~s~D- 79 (330)
T 2hes_X 16 KIWSFDFSQG--ILATGST--------D--RKIKLVSVKYDDFTLIDVLDETAH---KKAIRSVAWRPHTSLLAAGSFD- 79 (330)
T ss_dssp CEEEEEEETT--EEEEEES--------S--SCEEEEECSSSCCEEEEEECTTCC---CSCEEEEEECTTSSEEEEEETT-
T ss_pred ceeeeccCCC--EEEEEcC--------C--CEEEEEEecCCCeEEEEEEecCCc---cCCEEEEEECCCCCEEEEEeCC-
Confidence 4788899998 6655432 3 45666677665322 2 211101 1137789999999988876531
Q ss_pred CCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCC--------C-ceecCCC-ceEe
Q 005240 109 RRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG--------T-AKDFGTP-AVYT 178 (706)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g--------~-~~~lt~~-~~~~ 178 (706)
+.|.++++.. + ...+... ..+.
T Consensus 80 ------------------------------------------------~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~ 111 (330)
T 2hes_X 80 ------------------------------------------------STVSIWAKEESADRTFEMDLLAIIEGHENEVK 111 (330)
T ss_dssp ------------------------------------------------SCEEEEEC-------CCCEEEEEEC----CEE
T ss_pred ------------------------------------------------CcEEEEEcccCcCccccceeEEEEcCCCCcEE
Confidence 2344444421 1 1123333 5788
Q ss_pred eeeeCCCCcEEEEEeeccCcccccccccccceEEEEecC-CCe----eEEcccCCCCCCCCcccCccCCCCcceeeecCC
Q 005240 179 AVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD-GKL----VRELCDLPPAEDIPVCYNSVREGMRSISWRADK 253 (706)
Q Consensus 179 ~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~----~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg 253 (706)
.++|||||++|+..+.+ ..|.+|++. ++. ...+..+. ..+..+.|+||+
T Consensus 112 ~v~~sp~g~~las~s~D-------------~~v~iwd~~~~~~~~~~~~~~~~h~-------------~~v~~v~~~p~~ 165 (330)
T 2hes_X 112 GVAWSNDGYYLATCSRD-------------KSVWIWETDESGEEYECISVLQEHS-------------QDVKHVIWHPSE 165 (330)
T ss_dssp EEEECTTSCEEEEEETT-------------SCEEEEECCTTCCCCEEEEEECCCS-------------SCEEEEEECSSS
T ss_pred EEEECCCCCEEEEEeCC-------------CEEEEEeccCCCCCeEEEEEeccCC-------------CceEEEEECCCC
Confidence 99999999998866543 379999994 221 12222221 124578999999
Q ss_pred CceEEEEEeccCCCCccccCccceeeeecCCCCCCCC---ceEEeecccccccceecCC--CceEEEEeeccccceEEEE
Q 005240 254 PSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEK---PEILHKLDLRFRSVSWCDD--SLALVNETWYKTSQTRTWL 328 (706)
Q Consensus 254 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~---~~~l~~~~~~~~~~~wspD--g~~l~~~~~~~~~~~~l~~ 328 (706)
+. |+-. ..+ ..|.+||. ..+. ...+..+...+..+.|+|+ +..|+..+ .++..+||.
T Consensus 166 ~~-l~s~-s~D-----------~~i~iW~~---~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s--~D~~v~iw~ 227 (330)
T 2hes_X 166 AL-LASS-SYD-----------DTVRIWKD---YDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGS--DDSTVRVWK 227 (330)
T ss_dssp SE-EEEE-ETT-----------SCEEEEEE---ETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEE--TTSCEEEEE
T ss_pred CE-EEEE-cCC-----------CeEEEEEC---CCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEe--CCCeEEEEE
Confidence 85 4422 111 23667766 3332 2334455677888999999 55666544 235566776
Q ss_pred Ec
Q 005240 329 VC 330 (706)
Q Consensus 329 ~d 330 (706)
+.
T Consensus 228 ~~ 229 (330)
T 2hes_X 228 YM 229 (330)
T ss_dssp EE
T ss_pred ec
Confidence 64
|
| >2ogt_A Thermostable carboxylesterase EST50; alpha/beta hydrolase, hydrolase; 1.58A {Geobacillus stearothermophilus} PDB: 2ogs_A | Back alignment and structure |
|---|
Probab=99.11 E-value=2.1e-10 Score=124.33 Aligned_cols=132 Identities=21% Similarity=0.211 Sum_probs=93.0
Q ss_pred ccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCC-eEEEEcCCC-Cc
Q 005240 489 RKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARR-FAVLAGPSI-PI 566 (706)
Q Consensus 489 ~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G-~~v~~~~~~-~~ 566 (706)
+.|+..+ -+|.|.. .. .++|+||++|||++..++.... ......|+++| ++|+..++| +.
T Consensus 81 ~edcl~l--~v~~P~~--~~--~~~Pviv~iHGGg~~~g~~~~~------------~~~~~~la~~~~~vvv~~nYRlg~ 142 (498)
T 2ogt_A 81 SEDGLYL--NIWSPAA--DG--KKRPVLFWIHGGAFLFGSGSSP------------WYDGTAFAKHGDVVVVTINYRMNV 142 (498)
T ss_dssp BSCCCEE--EEEESCS--SS--CCEEEEEEECCSTTTSCCTTCG------------GGCCHHHHHHHTCEEEEECCCCHH
T ss_pred CCCCcEE--EEEecCC--CC--CCCcEEEEEcCCccCCCCCCCC------------cCCHHHHHhCCCEEEEeCCCcCch
Confidence 4566555 4778863 22 2589999999998653222111 11235677766 999998888 33
Q ss_pred CCCCCCCC-----chhhHHHHHHHHHHHHHHHHHcC--C-CCCCcEEEEEechHHHHHHHHHHhC--CCceeEEEeccCC
Q 005240 567 IGEGDKLP-----NDRFVEQLVSSAEAAVEEVVRRG--V-ADPSRIAVGGHSYGAFMTAHLLAHA--PHLFCCGIARSGS 636 (706)
Q Consensus 567 ~g~g~~~~-----~~~~~~~~~~D~~~~~~~l~~~~--~-id~~~i~i~G~S~GG~~a~~~~~~~--p~~~~a~v~~~~~ 636 (706)
.|++.... ....++..+.|+..|++|++++. + +|++||.|+|+|+||++++.++... ..+|+++|+.+|.
T Consensus 143 ~Gf~~~~~~~~~~~~~~~n~gl~D~~~al~wv~~~i~~fggdp~~V~l~G~SaGg~~~~~~~~~~~~~~lf~~~i~~sg~ 222 (498)
T 2ogt_A 143 FGFLHLGDSFGEAYAQAGNLGILDQVAALRWVKENIAAFGGDPDNITIFGESAGAASVGVLLSLPEASGLFRRAMLQSGS 222 (498)
T ss_dssp HHCCCCTTTTCGGGTTGGGHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTSCSEEEEESCC
T ss_pred hhccCchhhccccccCCCCcccHHHHHHHHHHHHHHHHhCCCCCeEEEEEECHHHHHHHHHHhcccccchhheeeeccCC
Confidence 35543322 12234566899999999998862 2 7999999999999999999888753 4689999999997
Q ss_pred CC
Q 005240 637 YN 638 (706)
Q Consensus 637 ~d 638 (706)
..
T Consensus 223 ~~ 224 (498)
T 2ogt_A 223 GS 224 (498)
T ss_dssp TT
T ss_pred cc
Confidence 65
|
| >2ha2_A ACHE, acetylcholinesterase; hydrolase fold, serine esterase, homod glycosylated protein, hydrolase; HET: NAG FUC SCK SCU P6G; 2.05A {Mus musculus} SCOP: c.69.1.1 PDB: 1j07_A* 1mah_A* 1j06_A* 1n5r_A* 2gyv_A* 2gyw_A* 2h9y_A* 2ha0_A* 2gyu_A* 2ha3_A* 2wls_A* 4a23_A* 2c0q_A* 2jey_A* 2jgm_A* 2whr_A* 2c0p_A* 1ku6_A* 1q84_A* 1q83_A* ... | Back alignment and structure |
|---|
Probab=99.10 E-value=1.1e-10 Score=128.09 Aligned_cols=132 Identities=17% Similarity=0.178 Sum_probs=91.7
Q ss_pred ccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHH-CCeEEEEcCCC-Cc
Q 005240 489 RKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA-RRFAVLAGPSI-PI 566 (706)
Q Consensus 489 ~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~G~~v~~~~~~-~~ 566 (706)
+.|+..+. +|.|... . +.++|+||++|||++..++.... ......|++ .|++|+.++|| +.
T Consensus 93 ~edcl~l~--v~~P~~~-~--~~~~Pviv~iHGGg~~~g~~~~~------------~~~~~~la~~~g~vvv~~nYRlg~ 155 (543)
T 2ha2_A 93 SEDCLYLN--VWTPYPR-P--ASPTPVLIWIYGGGFYSGAASLD------------VYDGRFLAQVEGAVLVSMNYRVGT 155 (543)
T ss_dssp ESCCCEEE--EEEESSC-C--SSCEEEEEEECCSTTTCCCTTSG------------GGCTHHHHHHHCCEEEEECCCCHH
T ss_pred CCcCCeEE--EeecCCC-C--CCCCeEEEEECCCccccCCCCCC------------cCChHHHHhcCCEEEEEecccccc
Confidence 45775554 6788752 2 23589999999998654222111 112345665 89999998888 44
Q ss_pred CCCCCCC-CchhhHHHHHHHHHHHHHHHHHc--CC-CCCCcEEEEEechHHHHHHHHHHhC--CCceeEEEeccCCC
Q 005240 567 IGEGDKL-PNDRFVEQLVSSAEAAVEEVVRR--GV-ADPSRIAVGGHSYGAFMTAHLLAHA--PHLFCCGIARSGSY 637 (706)
Q Consensus 567 ~g~g~~~-~~~~~~~~~~~D~~~~~~~l~~~--~~-id~~~i~i~G~S~GG~~a~~~~~~~--p~~~~a~v~~~~~~ 637 (706)
.|++... ......+..+.|+..|++|++++ .+ .||+||.|+|+|+||++++.++... +.+|+++|+.+|..
T Consensus 156 ~Gf~~~~~~~~~~~n~gl~D~~~al~wv~~~i~~fggDp~~v~i~G~SaGg~~~~~~~~~~~~~~lf~~~i~~sg~~ 232 (543)
T 2ha2_A 156 FGFLALPGSREAPGNVGLLDQRLALQWVQENIAAFGGDPMSVTLFGESAGAASVGMHILSLPSRSLFHRAVLQSGTP 232 (543)
T ss_dssp HHHCCCTTCSSCCSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHSHHHHTTCSEEEEESCCS
T ss_pred cccccCCCCCCCCCcccHHHHHHHHHHHHHHHHHhCCChhheEEEeechHHHHHHHHHhCcccHHhHhhheeccCCc
Confidence 4554331 11112344588999999999985 22 7999999999999999998888653 46899999999864
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.10 E-value=1.3e-08 Score=104.90 Aligned_cols=214 Identities=6% Similarity=-0.055 Sum_probs=133.1
Q ss_pred cceeEeecCCCCCCCC----eeeeecCCCCCcccceeeCCCCC-eEEEEeeccccccccCCceeEEEEEc-CCCceeecc
Q 005240 5 TGIGIHRLLPDDSLGP----EKEVHGYPDGAKINFVSWSPDGK-RIAFSVRVDEEDNVSSCKLRVWIADA-ETGEAKPLF 78 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~----~~~i~~~~~~~~~~~~~~SPDG~-~laf~~~~~~~~~~~~~~~~l~~~d~-~~g~~~~lt 78 (706)
..|.|+++.. ++ .+.+.. ....+..+.|+|||+ .|+.... ...|.++++ ++++...+.
T Consensus 33 ~~v~iw~~~~----~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~----------dg~i~~wd~~~~~~~~~~~ 96 (342)
T 1yfq_A 33 GSLTVYKFDI----QAKNVDLLQSLR--YKHPLLCCNFIDNTDLQIYVGTV----------QGEILKVDLIGSPSFQALT 96 (342)
T ss_dssp SEEEEEEEET----TTTEEEEEEEEE--CSSCEEEEEEEESSSEEEEEEET----------TSCEEEECSSSSSSEEECB
T ss_pred CeEEEEEeCC----CCccccceeeee--cCCceEEEEECCCCCcEEEEEcC----------CCeEEEEEeccCCceEecc
Confidence 4588899877 55 444442 233588999999999 8877542 357888899 888887775
Q ss_pred c--CCCccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhccc
Q 005240 79 E--SPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTT 156 (706)
Q Consensus 79 ~--~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 156 (706)
. +.. .+..+.|+| ++.|+..+.+
T Consensus 97 ~~~~~~-----~v~~l~~~~-~~~l~s~~~d------------------------------------------------- 121 (342)
T 1yfq_A 97 NNEANL-----GICRICKYG-DDKLIAASWD------------------------------------------------- 121 (342)
T ss_dssp SCCCCS-----CEEEEEEET-TTEEEEEETT-------------------------------------------------
T ss_pred ccCCCC-----ceEEEEeCC-CCEEEEEcCC-------------------------------------------------
Confidence 4 333 277899999 8887766421
Q ss_pred ceEEEEcc-C---------CC-ceecCCCceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCC-Ce--eE
Q 005240 157 AQLVLGSL-D---------GT-AKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG-KL--VR 222 (706)
Q Consensus 157 ~~l~~~~l-~---------g~-~~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~--~~ 222 (706)
+.|.++++ + ++ ...+.....+..++|+|++ |+..... ..|.+|++.. .. ..
T Consensus 122 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--l~~~~~d-------------~~i~i~d~~~~~~~~~~ 186 (342)
T 1yfq_A 122 GLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR--LIVGMNN-------------SQVQWFRLPLCEDDNGT 186 (342)
T ss_dssp SEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE--EEEEEST-------------TEEEEEESSCCTTCCCE
T ss_pred CeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCc--EEEEeCC-------------CeEEEEECCccccccce
Confidence 46667776 3 42 2223322678899999998 5444332 3799999986 32 11
Q ss_pred EcccCCCCCCCCcccCccCCCCcceeeec-CCCceEEEEEeccCCCCccccCccceeeeecCCCCC-----CCCceEEee
Q 005240 223 ELCDLPPAEDIPVCYNSVREGMRSISWRA-DKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAE-----GEKPEILHK 296 (706)
Q Consensus 223 ~l~~~~~~~~~p~~~~~~~~g~~~~~~sp-dg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-----~~~~~~l~~ 296 (706)
...... . ..+..+.|+| +++. |+... .+ +.+.+++.+. . ......+..
T Consensus 187 ~~~~~~-~-----------~~i~~i~~~~~~~~~-l~~~~-~d-----------g~i~i~~~~~-~~~~~~~~~~~~~~~ 240 (342)
T 1yfq_A 187 IEESGL-K-----------YQIRDVALLPKEQEG-YACSS-ID-----------GRVAVEFFDD-QGDDYNSSKRFAFRC 240 (342)
T ss_dssp EEECSC-S-----------SCEEEEEECSGGGCE-EEEEE-TT-----------SEEEEEECCT-TCCSTTCTTCEEEEC
T ss_pred eeecCC-C-----------CceeEEEECCCCCCE-EEEEe-cC-----------CcEEEEEEcC-CCcccccccceeeec
Confidence 111111 0 1245789999 9885 44332 11 2356666521 1 122233433
Q ss_pred ccc---------ccccceecCCCceEEEEeeccccceEEEEEcCCCC
Q 005240 297 LDL---------RFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK 334 (706)
Q Consensus 297 ~~~---------~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~ 334 (706)
... .+..+.|+||++.|+..+. ...|+++|+.++
T Consensus 241 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~----dg~i~vwd~~~~ 283 (342)
T 1yfq_A 241 HRLNLKDTNLAYPVNSIEFSPRHKFLYTAGS----DGIISCWNLQTR 283 (342)
T ss_dssp CCCCTTCCSSCCCEEEEEECTTTCCEEEEET----TSCEEEEETTTT
T ss_pred ccccccccccceeEEEEEEcCCCCEEEEecC----CceEEEEcCccH
Confidence 332 7788999999998887652 224777787763
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.5e-08 Score=106.56 Aligned_cols=236 Identities=8% Similarity=0.035 Sum_probs=127.4
Q ss_pred ceEEEEcc-CC-CceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCC
Q 005240 157 AQLVLGSL-DG-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDI 233 (706)
Q Consensus 157 ~~l~~~~l-~g-~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~ 233 (706)
+.|.++++ ++ ....+... ..+..++|+|||++|+..+.+ ..+.+|++....... .....
T Consensus 88 ~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d-------------~~v~iw~~~~~~~~~-----~~~~~ 149 (380)
T 3iz6_a 88 GRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLD-------------SACSIFNLSSQADRD-----GNMPV 149 (380)
T ss_dssp SEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSS-------------SCCEEEECCCCSSCC-----CSSTT
T ss_pred CeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCC-------------CcEEEEECCCCcccc-----CCccc
Confidence 56777888 55 33444433 567789999999999765433 368889886432110 00000
Q ss_pred CcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEe------ecccccccceec
Q 005240 234 PVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH------KLDLRFRSVSWC 307 (706)
Q Consensus 234 p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~------~~~~~~~~~~ws 307 (706)
...+......+..+.|+|++...|+-. . .+ ..|.+||+ .+++..... .+...+..+.|+
T Consensus 150 ~~~~~gh~~~v~~~~~~~~~~~~l~s~-s---~D--------~~i~~wd~---~~~~~~~~~~~~~~~~h~~~v~~~~~~ 214 (380)
T 3iz6_a 150 SRVLTGHKGYASSCQYVPDQETRLITG-S---GD--------QTCVLWDV---TTGQRISIFGSEFPSGHTADVLSLSIN 214 (380)
T ss_dssp CCBCCCCSSCCCCCBCCSSSSSCEEEE-C---TT--------SCEEEECT---TTCCEEEEECCCSSSSCCSCEEEEEEC
T ss_pred eeeccCCCcceEEEEEecCCCCEEEEE-C---CC--------CcEEEEEc---CCCcEEEEeecccCCCCccCeEEEEee
Confidence 000000011234678999876524422 1 11 24778888 555443322 234456677887
Q ss_pred C-CCceEEEEeeccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecC
Q 005240 308 D-DSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGR 386 (706)
Q Consensus 308 p-Dg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~ 386 (706)
+ ++..|+..+. ++. |.++|+.... +....+...-. ....+.|+|||++|+....+
T Consensus 215 ~~~~~~l~sgs~--D~~--v~~wd~~~~~-~~~~~~~~h~~------~v~~v~~~p~~~~l~s~s~D------------- 270 (380)
T 3iz6_a 215 SLNANMFISGSC--DTT--VRLWDLRITS-RAVRTYHGHEG------DINSVKFFPDGQRFGTGSDD------------- 270 (380)
T ss_dssp SSSCCEEEEEET--TSC--EEEEETTTTC-CCCEEECCCSS------CCCEEEECTTSSEEEEECSS-------------
T ss_pred cCCCCEEEEEEC--CCe--EEEEECCCCC-cceEEECCcCC------CeEEEEEecCCCeEEEEcCC-------------
Confidence 6 6777776542 233 4555654321 22222222111 23347899999988765421
Q ss_pred CCCCCCCCCceeeeecCCCceeeeecccchhhhhhhhhhccCCCceecccCCCEEEEEEecCCCCcEEEEEECCCCcee
Q 005240 387 GFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSS 465 (706)
Q Consensus 387 g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~p~~v~~~~~~~~~~~ 465 (706)
..+..+|+.+++....+..... ...........+.|||||+.|+....+ ..|++||+.+++..
T Consensus 271 --------~~i~lwd~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~~g~~l~~g~~d----g~i~vwd~~~~~~~ 333 (380)
T 3iz6_a 271 --------GTCRLFDMRTGHQLQVYNREPD----RNDNELPIVTSVAFSISGRLLFAGYSN----GDCYVWDTLLAEMV 333 (380)
T ss_dssp --------SCEEEEETTTTEEEEEECCCCS----SSCCSSCSCSEEEECSSSSEEEEECTT----SCEEEEETTTCCEE
T ss_pred --------CeEEEEECCCCcEEEEeccccc----ccccccCceEEEEECCCCCEEEEEECC----CCEEEEECCCCceE
Confidence 1366678877765554433211 000000112357899999877765433 35999998776543
|
| >3dqz_A Alpha-hydroxynitrIle lyase-like protein; A/B-hydrloase fold, cyanogenesis; 2.50A {Arabidopsis thaliana} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.09 E-value=8.6e-10 Score=108.74 Aligned_cols=101 Identities=9% Similarity=-0.030 Sum_probs=72.2
Q ss_pred eEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCCCCc---hhhHHHHHHHHHHHH
Q 005240 514 PCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPN---DRFVEQLVSSAEAAV 590 (706)
Q Consensus 514 p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~---~~~~~~~~~D~~~~~ 590 (706)
|.||++||.+.. ...+ ......|+++||.|+..+.+ |+|.+... ........+|+.+.+
T Consensus 5 ~~vv~lHG~~~~-----------~~~~----~~~~~~l~~~g~~vi~~D~~---G~G~S~~~~~~~~~~~~~~~~l~~~l 66 (258)
T 3dqz_A 5 HHFVLVHNAYHG-----------AWIW----YKLKPLLESAGHRVTAVELA---ASGIDPRPIQAVETVDEYSKPLIETL 66 (258)
T ss_dssp CEEEEECCTTCC-----------GGGG----TTHHHHHHHTTCEEEEECCT---TSTTCSSCGGGCCSHHHHHHHHHHHH
T ss_pred CcEEEECCCCCc-----------cccH----HHHHHHHHhCCCEEEEecCC---CCcCCCCCCCccccHHHhHHHHHHHH
Confidence 789999997421 1112 14567788899999996665 55655432 123455566666655
Q ss_pred HHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCC
Q 005240 591 EEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSY 637 (706)
Q Consensus 591 ~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~ 637 (706)
+.+ + + ..++.++|||+||++++.++.++|++++++|..++..
T Consensus 67 ~~l---~-~-~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl~~~~~ 108 (258)
T 3dqz_A 67 KSL---P-E-NEEVILVGFSFGGINIALAADIFPAKIKVLVFLNAFL 108 (258)
T ss_dssp HTS---C-T-TCCEEEEEETTHHHHHHHHHTTCGGGEEEEEEESCCC
T ss_pred HHh---c-c-cCceEEEEeChhHHHHHHHHHhChHhhcEEEEecCCC
Confidence 544 1 1 3789999999999999999999999999999888743
|
| >2r11_A Carboxylesterase NP; 2632844, putative hydrolase, structural genomics, joint center for structural genomics, JCSG; HET: MSE PGE; 1.96A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.09 E-value=2.7e-09 Score=108.53 Aligned_cols=123 Identities=11% Similarity=0.025 Sum_probs=80.7
Q ss_pred EEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcC
Q 005240 483 EMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGP 562 (706)
Q Consensus 483 ~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~ 562 (706)
+...+.. ++..+..+..-|++ .|+||++||.+.. ...+. ..+..|++ ||.|+..+
T Consensus 46 ~~~~v~~-~~~~~~~~~~g~~~--------~~~vv~lHG~~~~-----------~~~~~----~~~~~L~~-g~~vi~~D 100 (306)
T 2r11_A 46 KSFYIST-RFGQTHVIASGPED--------APPLVLLHGALFS-----------STMWY----PNIADWSS-KYRTYAVD 100 (306)
T ss_dssp EEEEECC-TTEEEEEEEESCTT--------SCEEEEECCTTTC-----------GGGGT----TTHHHHHH-HSEEEEEC
T ss_pred ceEEEec-CCceEEEEeeCCCC--------CCeEEEECCCCCC-----------HHHHH----HHHHHHhc-CCEEEEec
Confidence 3444444 45567766643321 3679999997521 11121 23556666 99999977
Q ss_pred CCCcCCCCCCCC--chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCC
Q 005240 563 SIPIIGEGDKLP--NDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYN 638 (706)
Q Consensus 563 ~~~~~g~g~~~~--~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d 638 (706)
.+|.. |.+.. .........+|+.++++.+ +.+++.++|+|+||++++.++.++|++++++|+.+|...
T Consensus 101 ~~G~g--G~s~~~~~~~~~~~~~~~l~~~l~~l------~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 170 (306)
T 2r11_A 101 IIGDK--NKSIPENVSGTRTDYANWLLDVFDNL------GIEKSHMIGLSLGGLHTMNFLLRMPERVKSAAILSPAET 170 (306)
T ss_dssp CTTSS--SSCEECSCCCCHHHHHHHHHHHHHHT------TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCSSB
T ss_pred CCCCC--CCCCCCCCCCCHHHHHHHHHHHHHhc------CCCceeEEEECHHHHHHHHHHHhCccceeeEEEEcCccc
Confidence 76432 33322 1223455566666665544 346899999999999999999999999999999998653
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.08 E-value=4e-08 Score=103.33 Aligned_cols=308 Identities=13% Similarity=0.083 Sum_probs=162.8
Q ss_pred CCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecC-CCCCCCCCCCC
Q 005240 40 PDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPS-SRRDPPKKTMV 118 (706)
Q Consensus 40 PDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~-~~~~~~~~~~~ 118 (706)
||++++ |+.+.. .......|.++|+++++...-...... . .+.+||||++||+.... .+..
T Consensus 82 ~~~~~v-yV~n~~----~~~~~~~VsVID~~t~~vv~~I~vG~~-----P-gia~SpDgk~lyVan~~~~~~~------- 143 (426)
T 3c75_H 82 PDARRV-YIQDPA----HFAAITQQFVIDGSTGRILGMTDGGFL-----P-HPVAAEDGSFFAQASTVFERIA------- 143 (426)
T ss_dssp CCTTEE-EEEECT----TTCSSEEEEEEETTTTEEEEEEEECSS-----C-EEEECTTSSCEEEEEEEEEETT-------
T ss_pred CCCCEE-EEECCC----cCCCCCeEEEEECCCCEEEEEEECCCC-----C-ceEECCCCCEEEEEeccccccc-------
Confidence 788886 555410 000117999999998876543322221 4 78999999998876310 0000
Q ss_pred CCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCCc-eecCC--------CceEeeeeeCCCCcE
Q 005240 119 PLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTA-KDFGT--------PAVYTAVEPSPDQKY 188 (706)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~-~~lt~--------~~~~~~~~~SpDG~~ 188 (706)
.......|.++|. +++. ..+.- +.....+.+||||++
T Consensus 144 ---------------------------------~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~ 190 (426)
T 3c75_H 144 ---------------------------------RGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKN 190 (426)
T ss_dssp ---------------------------------EEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSE
T ss_pred ---------------------------------cCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCE
Confidence 0001257888898 5543 23321 124568899999999
Q ss_pred EEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCC-CcceeeecCCCceEEEEEeccCCC
Q 005240 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREG-MRSISWRADKPSTLYWVEAQDRGD 267 (706)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g-~~~~~~spdg~~~l~~~~~~~~~~ 267 (706)
|++..... ...|.++|+.+.++..-....+. ....+ .+ ...+.+++||+ ++++.. ..+.
T Consensus 191 lyV~n~~~-----------~~~VsVID~~t~kvv~~I~v~g~---~~~~p---~g~~~~v~~~~dG~--~~~V~~-~~~~ 250 (426)
T 3c75_H 191 LLFYQFSP-----------APAVGVVDLEGKTFDRMLDVPDC---YHIFP---ASPTVFYMNCRDGS--LARVDF-ADGE 250 (426)
T ss_dssp EEEEECSS-----------SCEEEEEETTTTEEEEEEECCSE---EEEEE---EETTEEEEEETTSS--EEEEEC-CTTC
T ss_pred EEEEecCC-----------CCeEEEEECCCCeEEEEEEcCCc---eeecc---CCCcEEEEEcCCCC--EEEEEC-CCCc
Confidence 98775431 24799999997665432222111 00000 11 11356777776 444432 2111
Q ss_pred CccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCc--
Q 005240 268 ANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRV-- 345 (706)
Q Consensus 268 ~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~-- 345 (706)
.... . . ..+++ . .......+.+++|+..+++... ...++.+|..+.. ...+....
T Consensus 251 v~~~--~--~-~~~~v---~---------~~p~~~~~~~~~dg~~~~~~s~----~g~V~ViD~~~~~--~~v~~~~~~~ 307 (426)
T 3c75_H 251 TKVT--N--T-EVFHT---E---------DELLINHPAFSLRSGRLVWPTY----TGKIFQADLTAEG--ATFRAPIEAL 307 (426)
T ss_dssp CEEE--E--C-CCCSC---T---------TSCBCSCCEECTTTCEEEEEBT----TSEEEEEEECSSC--EEECCCEESS
T ss_pred EEEE--e--e-eeecc---C---------CCceeeEeeecCCCCEEEEEeC----CCcEEEEeccCCc--eEEeeeeeec
Confidence 1000 0 0 01111 0 0112234568999998888752 2369999987642 22211100
Q ss_pred ---ccccccCCC-CCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeeecccchhhhhh
Q 005240 346 ---FENVYSDPG-SPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFET 421 (706)
Q Consensus 346 ---~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~ 421 (706)
.......|+ ...+.++|||+++++..... ..|.+. .....|..+|+++++..+-+.....
T Consensus 308 ~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~----------~~gthk-~~s~~VsVID~~T~kvv~~I~vg~~----- 371 (426)
T 3c75_H 308 TEAERADDWRPGGWQQTAYHRQSDRIYLLVDQR----------DEWKHK-AASRFVVVLNAETGERINKIELGHE----- 371 (426)
T ss_dssp CTTTGGGTEEECSSSCEEEEGGGTEEEEEEEEC----------CTTCTT-SCEEEEEEEETTTCCEEEEEEEEEE-----
T ss_pred cccccccccccCCceeeEEcCCCCEEEEEeccc----------cccccc-CCCCEEEEEECCCCeEEEEEECCCC-----
Confidence 001111222 12356788888887764210 000000 0123588899999887655543321
Q ss_pred hhhhccCCCceecccCCCEEEEEEecCCCCcEEEEEECCCCceeE
Q 005240 422 AVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQ 466 (706)
Q Consensus 422 ~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~p~~v~~~~~~~~~~~~ 466 (706)
-+.+.|+|||+.++|+.... -..|.++|++++++.+
T Consensus 372 -------P~gia~spDg~~~lyv~n~~--s~~VsVID~~t~kvv~ 407 (426)
T 3c75_H 372 -------IDSINVSQDAEPLLYALSAG--TQTLHIYDAATGEELR 407 (426)
T ss_dssp -------ECEEEECCSSSCEEEEEETT--TTEEEEEETTTCCEEE
T ss_pred -------cCeEEEccCCCEEEEEEcCC--CCeEEEEECCCCCEEE
Confidence 12468999999555554432 3569999999887653
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.6e-08 Score=110.66 Aligned_cols=215 Identities=7% Similarity=0.032 Sum_probs=126.1
Q ss_pred cceeEeecCCCCCCCCee-----eeecCCCCCcccceeeCCC------CCeEEEEeeccccccccCCceeEEEEEcCCCc
Q 005240 5 TGIGIHRLLPDDSLGPEK-----EVHGYPDGAKINFVSWSPD------GKRIAFSVRVDEEDNVSSCKLRVWIADAETGE 73 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~-----~i~~~~~~~~~~~~~~SPD------G~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~ 73 (706)
..|.|.+++. ++.. .+.+.. ..+..++|||+ |+.||..+. ++ .|.++++.+++
T Consensus 183 ~tI~iWd~~~----~~~~~~~~~~l~~~~--~~V~~v~wsp~~~~~~~~~~LAs~s~--------Dg--tvrlWd~~~~~ 246 (524)
T 2j04_B 183 SCIQIFKMNT----STLHCVKVQTIVHSF--GEVWDLKWHEGCHAPHLVGCLSFVSQ--------EG--TINFLEIIDNA 246 (524)
T ss_dssp EEEEEEEEET----TTCCEEEEEEEEECC--CSEEEEEECSSCCCSSSSCEEEEEET--------TS--CEEEEECCCCS
T ss_pred ceEEEEEccC----CCCCceEEEEEEecC--CcEEEEEECCCCCCCCCCceEEEEec--------CC--eEEEEEcCCCc
Confidence 3578889876 5431 123211 24788999997 567776543 33 45556666553
Q ss_pred ee------------ecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhc
Q 005240 74 AK------------PLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNL 141 (706)
Q Consensus 74 ~~------------~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (706)
.. .+.... ..+..+.|+|++ .|+..+.
T Consensus 247 ~~~~~~~~~~~p~~~l~~h~-----~~v~sv~~s~~~-~lasgs~----------------------------------- 285 (524)
T 2j04_B 247 TDVHVFKMCEKPSLTLSLAD-----SLITTFDFLSPT-TVVCGFK----------------------------------- 285 (524)
T ss_dssp SSSSEEECCCSCSEEECCTT-----TCEEEEEESSSS-EEEEEET-----------------------------------
T ss_pred cccccceeecCceEEEEcCC-----CCEEEEEecCCC-eEEEEeC-----------------------------------
Confidence 21 111111 236789999876 5665532
Q ss_pred cCCchhhhhhhhcccceEEEEccC-C-Cce-ecCCC-ceEeee--eeCCCC-cEEEEEeeccCcccccccccccceEEEE
Q 005240 142 LKDEYDESLFDYYTTAQLVLGSLD-G-TAK-DFGTP-AVYTAV--EPSPDQ-KYVLITSMHRPYSYKVPCARFSQKVQVW 214 (706)
Q Consensus 142 ~~~~~d~~~~~~~~~~~l~~~~l~-g-~~~-~lt~~-~~~~~~--~~SpDG-~~i~~~~~~~~~~~~~~~~~~~~~i~~~ 214 (706)
.+.|.++|+. + .+. .+... ..+..+ .|+|+| +.|+-.+.+ ..|.+|
T Consensus 286 --------------DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D-------------~tvklW 338 (524)
T 2j04_B 286 --------------NGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVD-------------GYFYIF 338 (524)
T ss_dssp --------------TSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETT-------------SEEEEE
T ss_pred --------------CCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccC-------------CeEEEE
Confidence 1578888884 5 333 23333 567777 689998 555544433 379999
Q ss_pred ecCCCe-eEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceE
Q 005240 215 TTDGKL-VRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEI 293 (706)
Q Consensus 215 ~~~~~~-~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~ 293 (706)
|+...+ .+.+...... ..+..++|+||++. ++.. . .+ +.+.++|+. .+.....
T Consensus 339 D~~~~~~~~~~~~~~~~-----------~~v~~v~fsp~~~~-l~s~-~---~d--------~tv~lwd~~--~~~~~~~ 392 (524)
T 2j04_B 339 NPKDIATTKTTVSRFRG-----------SNLVPVVYCPQIYS-YIYS-D---GA--------SSLRAVPSR--AAFAVHP 392 (524)
T ss_dssp CGGGHHHHCEEEEECSC-----------CSCCCEEEETTTTE-EEEE-C---SS--------SEEEEEETT--CTTCCEE
T ss_pred ECCCCCccccccccccc-----------CcccceEeCCCcCe-EEEe-C---CC--------CcEEEEECc--cccccee
Confidence 997543 2222211100 01346799999985 4322 1 11 247788872 2333466
Q ss_pred EeecccccccceecCCCceEEEEeeccccceEEEEEcCCC
Q 005240 294 LHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (706)
Q Consensus 294 l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~ 333 (706)
+..+...+..++|||||+.|+..+.+ + .|.++|+..
T Consensus 393 l~gH~~~V~sva~Sp~g~~l~Sgs~D--g--tv~lwd~~~ 428 (524)
T 2j04_B 393 LVSRETTITAIGVSRLHPMVLAGSAD--G--SLIITNAAR 428 (524)
T ss_dssp EEECSSCEEEEECCSSCCBCEEEETT--T--EEECCBSCS
T ss_pred eecCCCceEEEEeCCCCCeEEEEECC--C--EEEEEechH
Confidence 77778889999999999988876522 3 355556544
|
| >3qit_A CURM TE, polyketide synthase; thioesterase, alpha/beta hydrolase, decarboxylase, sulfate elimination, terminal alkene production; 1.68A {Lyngbya majuscula 19L} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.8e-09 Score=107.74 Aligned_cols=122 Identities=14% Similarity=0.105 Sum_probs=85.4
Q ss_pred EEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCC
Q 005240 484 MIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPS 563 (706)
Q Consensus 484 ~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~ 563 (706)
...+. .+|..+....+.|++ .|+||++||.+.. ... ....+..|++.||.|+..+.
T Consensus 6 ~~~~~-~~g~~l~~~~~g~~~--------~~~vv~~hG~~~~-----------~~~----~~~~~~~l~~~G~~v~~~d~ 61 (286)
T 3qit_A 6 EKFLE-FGGNQICLCSWGSPE--------HPVVLCIHGILEQ-----------GLA----WQEVALPLAAQGYRVVAPDL 61 (286)
T ss_dssp EEEEE-ETTEEEEEEEESCTT--------SCEEEEECCTTCC-----------GGG----GHHHHHHHHHTTCEEEEECC
T ss_pred hheee-cCCceEEEeecCCCC--------CCEEEEECCCCcc-----------cch----HHHHHHHhhhcCeEEEEECC
Confidence 33444 378899998886532 3789999997421 011 12456778899999999666
Q ss_pred CCcCCCCCCCCc----hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCC
Q 005240 564 IPIIGEGDKLPN----DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYN 638 (706)
Q Consensus 564 ~~~~g~g~~~~~----~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d 638 (706)
+ |+|.+... ........+|+..+++.+ +..++.++|||+||++++.++.++|++++++|+.++...
T Consensus 62 ~---G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~ 131 (286)
T 3qit_A 62 F---GHGRSSHLEMVTSYSSLTFLAQIDRVIQEL------PDQPLLLVGHSMGAMLATAIASVRPKKIKELILVELPLP 131 (286)
T ss_dssp T---TSTTSCCCSSGGGCSHHHHHHHHHHHHHHS------CSSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCC
T ss_pred C---CCCCCCCCCCCCCcCHHHHHHHHHHHHHhc------CCCCEEEEEeCHHHHHHHHHHHhChhhccEEEEecCCCC
Confidence 5 44544332 122345555655555543 347899999999999999999999999999999998654
|
| >4g9e_A AHL-lactonase, alpha/beta hydrolase fold protein; AHL-binding; HET: C4L; 1.09A {Ochrobactrum} PDB: 4g5x_A* 4g8b_A* 4g8d_A 4g8c_A* 4g9g_A | Back alignment and structure |
|---|
Probab=99.08 E-value=2.2e-10 Score=114.34 Aligned_cols=119 Identities=12% Similarity=0.099 Sum_probs=74.3
Q ss_pred eEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEc
Q 005240 482 KEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAG 561 (706)
Q Consensus 482 ~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~ 561 (706)
.+...++..+| .+..+...+ +-|+||++||.+.. ...+ ......|++.||.|+..
T Consensus 3 ~~~~~~~~~~~-~~~~~~~~~---------~~~~vv~lHG~~~~-----------~~~~----~~~~~~l~~~g~~v~~~ 57 (279)
T 4g9e_A 3 INYHELETSHG-RIAVRESEG---------EGAPLLMIHGNSSS-----------GAIF----APQLEGEIGKKWRVIAP 57 (279)
T ss_dssp CEEEEEEETTE-EEEEEECCC---------CEEEEEEECCTTCC-----------GGGG----HHHHHSHHHHHEEEEEE
T ss_pred eEEEEEEcCCc-eEEEEecCC---------CCCeEEEECCCCCc-----------hhHH----HHHHhHHHhcCCeEEee
Confidence 34555665454 454333211 24789999997421 1111 13345557789999996
Q ss_pred CCCCcCCCCCCCCc-----hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccC
Q 005240 562 PSIPIIGEGDKLPN-----DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSG 635 (706)
Q Consensus 562 ~~~~~~g~g~~~~~-----~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~ 635 (706)
+.+ |+|.+... ........+|+.++++.+ +.+++.++|||+||.+++.++.++|+ +.+++..++
T Consensus 58 d~~---G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~lvG~S~Gg~~a~~~a~~~p~-~~~~vl~~~ 126 (279)
T 4g9e_A 58 DLP---GHGKSTDAIDPDRSYSMEGYADAMTEVMQQL------GIADAVVFGWSLGGHIGIEMIARYPE-MRGLMITGT 126 (279)
T ss_dssp CCT---TSTTSCCCSCHHHHSSHHHHHHHHHHHHHHH------TCCCCEEEEETHHHHHHHHHTTTCTT-CCEEEEESC
T ss_pred cCC---CCCCCCCCCCcccCCCHHHHHHHHHHHHHHh------CCCceEEEEECchHHHHHHHHhhCCc-ceeEEEecC
Confidence 665 55555432 112345566666665554 34689999999999999999999998 555555554
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.08 E-value=2.8e-08 Score=100.50 Aligned_cols=228 Identities=14% Similarity=0.106 Sum_probs=129.5
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCce---eecccCCCccccccccceEEecC--CcEEEEEec
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA---KPLFESPDICLNAVFGSFVWVNN--STLLIFTIP 106 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~---~~lt~~~~~~~~~~~~~~~wSpD--g~~l~~~~~ 106 (706)
.+..++|||||++||..+. + ..|.+++++++.. ..+..+.. .+..+.|+|+ |++|+..+.
T Consensus 11 ~V~~~~~s~~g~~las~s~--------D--~~v~iw~~~~~~~~~~~~l~gH~~-----~V~~v~~s~~~~g~~l~s~s~ 75 (297)
T 2pm7_B 11 MIHDAVMDYYGKRMATCSS--------D--KTIKIFEVEGETHKLIDTLTGHEG-----PVWRVDWAHPKFGTILASCSY 75 (297)
T ss_dssp CEEEEEECTTSSEEEEEET--------T--SCEEEEEBCSSCBCCCEEECCCSS-----CEEEEEECCGGGCSEEEEEET
T ss_pred ceEEEEECCCCCEEEEEeC--------C--CEEEEEecCCCCcEEEEEEccccC-----CeEEEEecCCCcCCEEEEEcC
Confidence 4778999999999988653 3 3455566654322 22322222 3778899864 888776642
Q ss_pred CCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCCc---eecCCC-ceEeeee
Q 005240 107 SSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTA---KDFGTP-AVYTAVE 181 (706)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~---~~lt~~-~~~~~~~ 181 (706)
+ +.|.++++ +++. ..+... ..+..++
T Consensus 76 D-------------------------------------------------~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~ 106 (297)
T 2pm7_B 76 D-------------------------------------------------GKVMIWKEENGRWSQIAVHAVHSASVNSVQ 106 (297)
T ss_dssp T-------------------------------------------------TEEEEEEBSSSCBCCCEEECCCSSCEEEEE
T ss_pred C-------------------------------------------------CEEEEEEcCCCceEEEEEeecCCCceeEEE
Confidence 1 56777787 4432 223323 5788999
Q ss_pred eCCC--CcEEEEEeeccCcccccccccccceEEEEecCCCe---eEEcccCCCCCCCCcccCccCCCCcceeeecCCC--
Q 005240 182 PSPD--QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL---VRELCDLPPAEDIPVCYNSVREGMRSISWRADKP-- 254 (706)
Q Consensus 182 ~SpD--G~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~-- 254 (706)
|+|+ |+.|+..+.+ ..|.+|++.... ...+.... ..+..+.|+|++.
T Consensus 107 ~~p~~~g~~l~s~s~d-------------~~v~~wd~~~~~~~~~~~~~~h~-------------~~v~~~~~~p~~~~~ 160 (297)
T 2pm7_B 107 WAPHEYGPMLLVASSD-------------GKVSVVEFKENGTTSPIIIDAHA-------------IGVNSASWAPATIEE 160 (297)
T ss_dssp ECCGGGCSEEEEEETT-------------SEEEEEEBCSSSCBCCEEEECCS-------------SCEEEEEECCCC---
T ss_pred eCcCCCCcEEEEEECC-------------CcEEEEEecCCCceeeeeeeccc-------------CccceEeecCCcccc
Confidence 9998 7777755443 378999987542 11221111 2244778999741
Q ss_pred ----------ceEEEEEeccCCCCccccCccceeeeecCCCCCCCCc-----eEEeecccccccceecCCC---ceEEEE
Q 005240 255 ----------STLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP-----EILHKLDLRFRSVSWCDDS---LALVNE 316 (706)
Q Consensus 255 ----------~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~-----~~l~~~~~~~~~~~wspDg---~~l~~~ 316 (706)
..|+ .... ...|.+||+ ..++. ..+..+...+..++|+|++ ..|+..
T Consensus 161 ~~~~~~~~~~~~l~-sgs~-----------D~~v~lwd~---~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~ 225 (297)
T 2pm7_B 161 DGEHNGTKESRKFV-TGGA-----------DNLVKIWKY---NSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASV 225 (297)
T ss_dssp ---------CCEEE-EEET-----------TSCEEEEEE---ETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEE
T ss_pred cccCCCCCCcceEE-EEcC-----------CCcEEEEEE---cCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEE
Confidence 2133 2111 124777777 33331 2344556778899999995 666655
Q ss_pred eeccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEee
Q 005240 317 TWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 317 ~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 371 (706)
+ .++..+||.++..........+...... .....++|+|||++|+...
T Consensus 226 s--~D~~v~iWd~~~~~~~~~~~~~~~~~~~-----~~v~~~~~s~~g~~las~~ 273 (297)
T 2pm7_B 226 S--QDRTCIIWTQDNEQGPWKKTLLKEEKFP-----DVLWRASWSLSGNVLALSG 273 (297)
T ss_dssp E--TTSCEEEEEESSTTSCCEEEESSSSCCS-----SCEEEEEECSSSCCEEEEE
T ss_pred E--CCCcEEEEEeCCCCCccceeeeecccCC-----CcEEEEEECCCCCEEEEEc
Confidence 4 2345667766533211011111101110 0122477999999887664
|
| >2qs9_A Retinoblastoma-binding protein 9; B5T overexpressed gene protein, BOG, RBBP9, RBBP10, HR2978, NESG, structural genomics, PSI-2; 1.72A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.08 E-value=2.1e-09 Score=101.30 Aligned_cols=150 Identities=12% Similarity=-0.023 Sum_probs=94.1
Q ss_pred ceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCch-HHHHHHHC-CeEEEEcCCCCcCCCCCCCCchhhHHHHHHHHHHHH
Q 005240 513 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPT-SSLIFLAR-RFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAV 590 (706)
Q Consensus 513 ~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~-G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~ 590 (706)
.|+||++||.+.. .. .. ..... ....|+++ ||.|+.++.+|... . +....+
T Consensus 4 ~p~vv~lHG~~~~----------~~-~~-~~~~~~~~~~l~~~~g~~vi~~d~~g~~~---~------------~~~~~~ 56 (194)
T 2qs9_A 4 PSKAVIVPGNGGG----------DV-TT-HGWYGWVKKELEKIPGFQCLAKNMPDPIT---A------------RESIWL 56 (194)
T ss_dssp CCEEEEECCSSSS----------CT-TT-STTHHHHHHHHTTSTTCCEEECCCSSTTT---C------------CHHHHH
T ss_pred CCEEEEECCCCCC----------Cc-cc-chHHHHHHHHHhhccCceEEEeeCCCCCc---c------------cHHHHH
Confidence 5889999997421 00 00 01112 45567777 99999987764311 0 111223
Q ss_pred HHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCCCCC-----------CCccc-------------
Q 005240 591 EEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTL-----------TPFGF------------- 646 (706)
Q Consensus 591 ~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d~~~-----------~~~~~------------- 646 (706)
+.+.+.-.+ ..++.++|||+||++++.++.++| ++++++.+|...... .+..+
T Consensus 57 ~~~~~~l~~-~~~~~lvG~S~Gg~ia~~~a~~~p--v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~lii 133 (194)
T 2qs9_A 57 PFMETELHC-DEKTIIIGHSSGAIAAMRYAETHR--VYAIVLVSAYTSDLGDENERASGYFTRPWQWEKIKANCPYIVQF 133 (194)
T ss_dssp HHHHHTSCC-CTTEEEEEETHHHHHHHHHHHHSC--CSEEEEESCCSSCTTCHHHHHTSTTSSCCCHHHHHHHCSEEEEE
T ss_pred HHHHHHhCc-CCCEEEEEcCcHHHHHHHHHHhCC--CCEEEEEcCCccccchhhhHHHhhhcccccHHHHHhhCCCEEEE
Confidence 334443112 379999999999999999999998 999999998654210 01000
Q ss_pred -----------hHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHhccCC
Q 005240 647 -----------QAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCLSNT 699 (706)
Q Consensus 647 -----------~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~~~~l~~~~ 699 (706)
..+++.+.+ ..+++++|+++|.+.. ...+.+.++++||++...++.
T Consensus 134 ~G~~D~~vp~~~~~~~~~~~-----~~~~~~~~~~gH~~~~--~~p~~~~~~~~fl~~~~~~~~ 190 (194)
T 2qs9_A 134 GSTDDPFLPWKEQQEVADRL-----ETKLHKFTDCGHFQNT--EFHELITVVKSLLKVPALEHH 190 (194)
T ss_dssp EETTCSSSCHHHHHHHHHHH-----TCEEEEESSCTTSCSS--CCHHHHHHHHHHHTCCCCCCC
T ss_pred EeCCCCcCCHHHHHHHHHhc-----CCeEEEeCCCCCccch--hCHHHHHHHHHHHHhhhhhhh
Confidence 112444444 3589999999998763 234566778899998765544
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.07 E-value=2.7e-08 Score=106.46 Aligned_cols=200 Identities=11% Similarity=0.097 Sum_probs=117.7
Q ss_pred CCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCC----------Cc-eeecccCCCccccccccceEEecC
Q 005240 29 DGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAET----------GE-AKPLFESPDICLNAVFGSFVWVNN 97 (706)
Q Consensus 29 ~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~----------g~-~~~lt~~~~~~~~~~~~~~~wSpD 97 (706)
....+..++|+|++..++++.. ....|.++++.. .+ ...+..+.. .+..+.|+|+
T Consensus 127 h~~~v~~l~~~p~~~~~lat~~---------~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~-----~v~~l~~~~~ 192 (430)
T 2xyi_A 127 HEGEVNRARYMPQNACVIATKT---------PSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQK-----EGYGLSWNPN 192 (430)
T ss_dssp ESSCCSEEEEETTEEEEEEEEC---------SSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSS-----CCCCEEECTT
T ss_pred CCCcEEEEEECCCCCcEEEEEC---------CCCcEEEEECCCcccccCccccCCCcEEecCCCC-----CeEEEEeCCC
Confidence 3346889999998554444432 224577777764 11 122222222 2678999999
Q ss_pred Cc-EEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CC-C-------
Q 005240 98 ST-LLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-T------- 167 (706)
Q Consensus 98 g~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g-~------- 167 (706)
++ .|+.... .+.|.++++ .+ .
T Consensus 193 ~~~~l~s~~~-------------------------------------------------dg~i~vwd~~~~~~~~~~~~~ 223 (430)
T 2xyi_A 193 LNGYLLSASD-------------------------------------------------DHTICLWDINATPKEHRVIDA 223 (430)
T ss_dssp STTEEEEECT-------------------------------------------------TSCEEEEETTSCCBGGGEEEC
T ss_pred CCCeEEEEeC-------------------------------------------------CCeEEEEeCCCCCCCCceecc
Confidence 98 7665532 145667777 32 1
Q ss_pred ceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCe----eEEcccCCCCCCCCcccCccCC
Q 005240 168 AKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL----VRELCDLPPAEDIPVCYNSVRE 242 (706)
Q Consensus 168 ~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~l~~~~~~~~~p~~~~~~~~ 242 (706)
...+... ..+..++|+|++..++++.... ..|.+|++..+. ...+.... .
T Consensus 224 ~~~~~~h~~~v~~v~~~p~~~~~l~s~~~d------------g~i~i~d~~~~~~~~~~~~~~~~~-------------~ 278 (430)
T 2xyi_A 224 KNIFTGHTAVVEDVAWHLLHESLFGSVADD------------QKLMIWDTRNNNTSKPSHTVDAHT-------------A 278 (430)
T ss_dssp SEEECCCSSCEEEEEECSSCTTEEEEEETT------------SEEEEEETTCSCSSSCSEEEECCS-------------S
T ss_pred ceeecCCCCCEeeeEEeCCCCCEEEEEeCC------------CeEEEEECCCCCCCcceeEeecCC-------------C
Confidence 1222223 5788999999665555554432 479999998542 22221111 2
Q ss_pred CCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCC-ceEEeecccccccceecCCCceEEEEeeccc
Q 005240 243 GMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEK-PEILHKLDLRFRSVSWCDDSLALVNETWYKT 321 (706)
Q Consensus 243 g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~ 321 (706)
.+..++|+|+++. ++.+...+ +.|.+||+. ..+. ...+..+...+..+.|+|+++.++++...+
T Consensus 279 ~v~~i~~~p~~~~-~l~tg~~d-----------g~v~vwd~~--~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d- 343 (430)
T 2xyi_A 279 EVNCLSFNPYSEF-ILATGSAD-----------KTVALWDLR--NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTD- 343 (430)
T ss_dssp CEEEEEECSSCTT-EEEEEETT-----------SEEEEEETT--CTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETT-
T ss_pred CeEEEEeCCCCCC-EEEEEeCC-----------CeEEEEeCC--CCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCC-
Confidence 3558899999987 44343221 247888883 2123 445556678889999999997755544333
Q ss_pred cceEEEEEcC
Q 005240 322 SQTRTWLVCP 331 (706)
Q Consensus 322 ~~~~l~~~d~ 331 (706)
+...||.+..
T Consensus 344 ~~i~iwd~~~ 353 (430)
T 2xyi_A 344 RRLHVWDLSK 353 (430)
T ss_dssp SCCEEEEGGG
T ss_pred CcEEEEeCCC
Confidence 4445555543
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.07 E-value=5.3e-08 Score=101.49 Aligned_cols=313 Identities=9% Similarity=-0.001 Sum_probs=155.5
Q ss_pred CCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCCCCCC
Q 005240 40 PDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVP 119 (706)
Q Consensus 40 PDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~ 119 (706)
||++++ |+.+.. .+......|+++|.++++......... .. .+++||||++||..........
T Consensus 13 ~~~~~~-yv~~~~---~~~~~d~~v~v~D~~t~~~~~~i~~g~-----~p-~i~~spdg~~lyv~~~~~~~~~------- 75 (361)
T 2oiz_A 13 PQENRI-YVMDSV---FMHLTESRVHVYDYTNGKFLGMVPTAF-----NG-HVQVSNDGKKIYTMTTYHERIT------- 75 (361)
T ss_dssp CGGGEE-EEEECC---GGGGGGCEEEEEETTTCCEEEEEECCE-----EE-EEEECTTSSEEEEEEEEETTSS-------
T ss_pred CCCCEE-EEECCC---CCccccCeEEEEECCCCeEEEEecCCC-----CC-ceEECCCCCEEEEEEecccccc-------
Confidence 578776 555410 000123589999998887654322211 24 7899999999887632100000
Q ss_pred CCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCCc-eecCC-------CceEeeeeeCCCCcEEE
Q 005240 120 LGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTA-KDFGT-------PAVYTAVEPSPDQKYVL 190 (706)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~-~~lt~-------~~~~~~~~~SpDG~~i~ 190 (706)
.+ .....|.++|+ +++. ..+.. +.....+++||||++|+
T Consensus 76 ~g--------------------------------~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~ 123 (361)
T 2oiz_A 76 RG--------------------------------KRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIV 123 (361)
T ss_dssp SS--------------------------------CEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEE
T ss_pred cC--------------------------------CCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEE
Confidence 00 01246778887 4433 22321 12456789999999998
Q ss_pred EEeeccCcccccccccccceEEEEecCCCeeEEc-ccCCCCCCCCcccCccCCC-CcceeeecCCCceEEEEEeccCCCC
Q 005240 191 ITSMHRPYSYKVPCARFSQKVQVWTTDGKLVREL-CDLPPAEDIPVCYNSVREG-MRSISWRADKPSTLYWVEAQDRGDA 268 (706)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l-~~~~~~~~~p~~~~~~~~g-~~~~~~spdg~~~l~~~~~~~~~~~ 268 (706)
...... ...|.+||+++.+...- ....+... ...++ .+ ...+..++||+. +++. ....+..
T Consensus 124 v~n~~~-----------~~~v~v~d~~~~~~~~~~i~~~~~~~-v~~~p---~~~~~~~~~~~dg~~-~~v~-~~~~g~~ 186 (361)
T 2oiz_A 124 LQNASP-----------ATSIGIVDVAKGDYVEDVTAAAGCWS-VIPQP---NRPRSFMTICGDGGL-LTIN-LGEDGKV 186 (361)
T ss_dssp EEEESS-----------SEEEEEEETTTTEEEEEEGGGTTEEE-EEECT---TSSSEEEEEETTSSE-EEEE-ECTTSSE
T ss_pred EECCCC-----------CCeEEEEECCCCcEEEEEecCCCcce-eEEcC---CCCeeEEEECCCCcE-EEEE-ECCCCcE
Confidence 765431 24799999997654332 22211100 00000 11 123456666653 2222 1111110
Q ss_pred ccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCcc--
Q 005240 269 NVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVF-- 346 (706)
Q Consensus 269 ~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~-- 346 (706)
+..... ..+............++|+..+++.+ . ...++.+|+.+.+ ...+.....
T Consensus 187 ---------~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~~~~-~---~~~v~v~d~~~~~--~~~~~~~~~~~ 243 (361)
T 2oiz_A 187 ---------ASQSRS--------KQMFSVKDDPIFIAPALDKDKAHFVS-Y---YGNVYSADFSGDE--VKVDGPWSLLN 243 (361)
T ss_dssp ---------EEEEEC--------CCCSCTTTSCBCSCCEECSSEEEEEB-T---TSEEEEEECSSSS--CEEEEEEESCC
T ss_pred ---------eeeccc--------cceEcCCCCceEEEecccCCEEEEEe-C---CCeEEEEEecCCC--ceecccccccC
Confidence 000000 00001111112334578887777764 2 2359999987642 222210000
Q ss_pred ---cccccCCC-CCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeeecccchhhhhhh
Q 005240 347 ---ENVYSDPG-SPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETA 422 (706)
Q Consensus 347 ---~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~ 422 (706)
......|. ...++++|||++++.....++. .+... .....++.+|+++++..+-+...
T Consensus 244 ~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~---------~~~~~-~~~~~v~viD~~t~~~v~~i~~~-------- 305 (361)
T 2oiz_A 244 DEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGK---------EGTHK-FPAAEIWVMDTKTKQRVARIPGR-------- 305 (361)
T ss_dssp HHHHHTTCEECCSSCEEEETTTTEEEEEEESSCC---------TTCTT-CCCSEEEEEETTTTEEEEEEECT--------
T ss_pred ccccccccccCCeeEEEEecCCCeEEEEEccCCC---------ccccc-CCCceEEEEECCCCcEEEEEecC--------
Confidence 00111122 2235678888887765421000 01000 11236888999988765443321
Q ss_pred hhhccCCCceecccCCCEEEEEEecCCCCcEEEEEECCCCceeEeec
Q 005240 423 VALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITN 469 (706)
Q Consensus 423 ~~~~~~~~~~~~s~Dg~~l~~~~~~~~~p~~v~~~~~~~~~~~~lt~ 469 (706)
. ...+.|||||++|+ +.+. ..|.++|+++++.+.+..
T Consensus 306 ----~-p~~ia~spdg~~l~-v~n~----~~v~v~D~~t~~l~~~~~ 342 (361)
T 2oiz_A 306 ----D-ALSMTIDQQRNLML-TLDG----GNVNVYDISQPEPKLLRT 342 (361)
T ss_dssp ----T-CCEEEEETTTTEEE-EECS----SCEEEEECSSSSCEEEEE
T ss_pred ----C-eeEEEECCCCCEEE-EeCC----CeEEEEECCCCcceeeEE
Confidence 1 23578999999555 4332 779999999985555544
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.07 E-value=7.5e-08 Score=97.86 Aligned_cols=252 Identities=12% Similarity=0.075 Sum_probs=150.9
Q ss_pred cceeEeecCCCCCCCCeeeeecCCC-CCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCc
Q 005240 5 TGIGIHRLLPDDSLGPEKEVHGYPD-GAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~i~~~~~-~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~ 83 (706)
.+|+|.|+.+ |+..++-.+.. ...+..++|||||++||.... ...|.++++++++..+......
T Consensus 45 ~tV~iWd~~t----g~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~----------Dg~v~iw~~~~~~~~~~~~~h~- 109 (318)
T 4ggc_A 45 NSVYLWSASS----GDILQLLQMEQPGEYISSVAWIKEGNYLAVGTS----------SAEVQLWDVQQQKRLRNMTSHS- 109 (318)
T ss_dssp TEEEEEETTT----CCEEEEEECCSTTCCEEEEEECTTSSEEEEEET----------TSEEEEEETTTTEEEEEEECCS-
T ss_pred CEEEEEECCC----CCEEEEEEecCCCCeEEEEEECCCCCEEEEEEC----------CCcEEEeecCCceeEEEecCcc-
Confidence 4589999987 87766543332 336889999999999987642 2567778988887655432222
Q ss_pred cccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEc
Q 005240 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (706)
Q Consensus 84 ~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~ 163 (706)
.....++++++.|+..+.. ..+..++
T Consensus 110 -----~~~~~~~~~~~~l~s~~~~-------------------------------------------------~~~~~~~ 135 (318)
T 4ggc_A 110 -----ARVGSLSWNSYILSSGSRS-------------------------------------------------GHIHHHD 135 (318)
T ss_dssp -----SCEEEEEEETTEEEEEETT-------------------------------------------------SEEEEEE
T ss_pred -----ceEEEeecCCCEEEEEecC-------------------------------------------------CceEeee
Confidence 2344677888877765421 2344444
Q ss_pred c-CC-C-ceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEE--cccCCCCCCCCccc
Q 005240 164 L-DG-T-AKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRE--LCDLPPAEDIPVCY 237 (706)
Q Consensus 164 l-~g-~-~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--l~~~~~~~~~p~~~ 237 (706)
. .+ . ...+... ..+....++++|+.|+..... ..|.+||+..++... +......
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-------------~~i~iwd~~~~~~~~~~~~~~~~~------- 195 (318)
T 4ggc_A 136 VRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGND-------------NLVNVWPSAPGEGGWVPLQTFTQH------- 195 (318)
T ss_dssp TTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETT-------------SCEEEEESSCBTTBSCCSEEECCC-------
T ss_pred cCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecC-------------cceeEEECCCCcccccceeeeccc-------
Confidence 4 22 2 2223333 567788999999998755543 378999987543211 1111000
Q ss_pred CccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEe
Q 005240 238 NSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNET 317 (706)
Q Consensus 238 ~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~ 317 (706)
...+..+.|+|++.. ++.+.. .. ....|.++|. ..............+....|+|++..++..+
T Consensus 196 ---~~~v~~~~~~~~~~~-~~~~~~-~~--------~~~~i~lwd~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s 259 (318)
T 4ggc_A 196 ---QGAVKAVAWCPWQSN-VLATGG-GT--------SDRHIRIWNV---CSGACLSAVDAHSQVCSILWSPHYKELISGH 259 (318)
T ss_dssp ---CSCEEEEEECTTSTT-EEEEEE-CT--------TTCEEEEEET---TTCCEEEEEECSSCEEEEEEETTTTEEEEEE
T ss_pred ---CCceEEEEecCCCCc-EEEEEe-cC--------CCCEEEEEec---ccccccccccceeeeeeeeecccccceEEEE
Confidence 012346789999887 443321 11 1124677777 4455444555566778889999999888765
Q ss_pred eccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEee
Q 005240 318 WYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 318 ~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 371 (706)
...+ ..|+++|+.++ +....+...... ...++|+|||++|+...
T Consensus 260 g~~d--~~i~iwd~~~~--~~~~~l~gH~~~------V~~l~~spdg~~l~S~s 303 (318)
T 4ggc_A 260 GFAQ--NQLVIWKYPTM--AKVAELKGHTSR------VLSLTMSPDGATVASAA 303 (318)
T ss_dssp CTTT--CCEEEEETTTC--CEEEEECCCSSC------EEEEEECTTSSCEEEEE
T ss_pred EcCC--CEEEEEECCCC--cEEEEEcCCCCC------EEEEEEcCCCCEEEEEe
Confidence 3332 34667787774 333333322111 23478999999887654
|
| >3qvm_A OLEI00960; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta hydrolase fold, hydrolase; 2.00A {Oleispira antarctica} | Back alignment and structure |
|---|
Probab=99.07 E-value=4.6e-10 Score=112.05 Aligned_cols=99 Identities=15% Similarity=0.107 Sum_probs=70.4
Q ss_pred eEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCCCCch----h--hHHHHHHHHH
Q 005240 514 PCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPND----R--FVEQLVSSAE 587 (706)
Q Consensus 514 p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~----~--~~~~~~~D~~ 587 (706)
|+||++||.+.. ...+. ..+..|++ ||.|+..+.+ |+|.+.... . ......+|+.
T Consensus 29 ~~vv~lHG~~~~-----------~~~~~----~~~~~l~~-g~~v~~~d~~---G~G~s~~~~~~~~~~~~~~~~~~~~~ 89 (282)
T 3qvm_A 29 KTVLLAHGFGCD-----------QNMWR----FMLPELEK-QFTVIVFDYV---GSGQSDLESFSTKRYSSLEGYAKDVE 89 (282)
T ss_dssp CEEEEECCTTCC-----------GGGGT----TTHHHHHT-TSEEEECCCT---TSTTSCGGGCCTTGGGSHHHHHHHHH
T ss_pred CeEEEECCCCCC-----------cchHH----HHHHHHhc-CceEEEEecC---CCCCCCCCCCCccccccHHHHHHHHH
Confidence 789999996421 11121 23556666 9999996665 455553321 1 3455666666
Q ss_pred HHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCC
Q 005240 588 AAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSY 637 (706)
Q Consensus 588 ~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~ 637 (706)
++++.+ +.+++.++|||+||.+++.++.++|++++++++.+|..
T Consensus 90 ~~~~~~------~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~ 133 (282)
T 3qvm_A 90 EILVAL------DLVNVSIIGHSVSSIIAGIASTHVGDRISDITMICPSP 133 (282)
T ss_dssp HHHHHT------TCCSEEEEEETHHHHHHHHHHHHHGGGEEEEEEESCCS
T ss_pred HHHHHc------CCCceEEEEecccHHHHHHHHHhCchhhheEEEecCcc
Confidence 665554 34789999999999999999999999999999999864
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.07 E-value=3.2e-08 Score=102.81 Aligned_cols=113 Identities=14% Similarity=0.195 Sum_probs=78.0
Q ss_pred CcccceeeCCC---CCeEEEEeeccccccccCCceeEEEEEcCC-Ccee--ecccCCCccccccccceEEecCCcEEEEE
Q 005240 31 AKINFVSWSPD---GKRIAFSVRVDEEDNVSSCKLRVWIADAET-GEAK--PLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (706)
Q Consensus 31 ~~~~~~~~SPD---G~~laf~~~~~~~~~~~~~~~~l~~~d~~~-g~~~--~lt~~~~~~~~~~~~~~~wSpDg~~l~~~ 104 (706)
..+..++|||| |++|+.... + ..|.++++++ +... .+..+.. .+..+.|+|||++|+..
T Consensus 40 ~~v~~~~~~~~~~~g~~l~~~~~--------d--g~i~iw~~~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l~s~ 104 (368)
T 3mmy_A 40 DSIGCLSFSPPTLPGNFLIAGSW--------A--NDVRCWEVQDSGQTIPKAQQMHTG-----PVLDVCWSDDGSKVFTA 104 (368)
T ss_dssp SCEEEEEECCTTSSSEEEEEEET--------T--SEEEEEEECTTSCEEEEEEEECSS-----CEEEEEECTTSSEEEEE
T ss_pred CceEEEEEcCCCCCceEEEEECC--------C--CcEEEEEcCCCCceeEEEeccccC-----CEEEEEECcCCCEEEEE
Confidence 36889999999 588877542 3 4566667665 4332 2332232 27789999999998876
Q ss_pred ecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCCceecCCC-ceEeeeee
Q 005240 105 IPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEP 182 (706)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~~~lt~~-~~~~~~~~ 182 (706)
+. .+.|.++++ +++...+... ..+..+.|
T Consensus 105 ~~-------------------------------------------------dg~v~iwd~~~~~~~~~~~~~~~v~~~~~ 135 (368)
T 3mmy_A 105 SC-------------------------------------------------DKTAKMWDLSSNQAIQIAQHDAPVKTIHW 135 (368)
T ss_dssp ET-------------------------------------------------TSEEEEEETTTTEEEEEEECSSCEEEEEE
T ss_pred cC-------------------------------------------------CCcEEEEEcCCCCceeeccccCceEEEEE
Confidence 42 157888888 4454444434 67889999
Q ss_pred --CCCCcEEEEEeeccCcccccccccccceEEEEecCCCe
Q 005240 183 --SPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL 220 (706)
Q Consensus 183 --SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 220 (706)
+|+|+.|+..+.. ..|.+||+..++
T Consensus 136 ~~~~~~~~l~~~~~d-------------g~i~vwd~~~~~ 162 (368)
T 3mmy_A 136 IKAPNYSCVMTGSWD-------------KTLKFWDTRSSN 162 (368)
T ss_dssp EECSSCEEEEEEETT-------------SEEEEECSSCSS
T ss_pred EeCCCCCEEEEccCC-------------CcEEEEECCCCc
Confidence 9999988766543 379999998554
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.07 E-value=6.4e-09 Score=106.97 Aligned_cols=204 Identities=10% Similarity=0.070 Sum_probs=112.1
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCc--eeec---ccCCCccccccccceEEec--CCcEEEEE
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE--AKPL---FESPDICLNAVFGSFVWVN--NSTLLIFT 104 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~--~~~l---t~~~~~~~~~~~~~~~wSp--Dg~~l~~~ 104 (706)
.+..++|||||++||.... + ..|.++++.++. .+.+ ..+.. .+..+.|+| |+++|+..
T Consensus 13 ~v~~~~~~~~~~~l~~~~~--------d--g~i~iw~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~d~~~l~s~ 77 (351)
T 3f3f_A 13 LVHDVVYDFYGRHVATCSS--------D--QHIKVFKLDKDTSNWELSDSWRAHDS-----SIVAIDWASPEYGRIIASA 77 (351)
T ss_dssp CEEEEEECSSSSEEEEEET--------T--SEEEEEEECSSSCCEEEEEEEECCSS-----CEEEEEECCGGGCSEEEEE
T ss_pred ceeEEEEcCCCCEEEEeeC--------C--CeEEEEECCCCCCcceecceeccCCC-----cEEEEEEcCCCCCCEEEEE
Confidence 4889999999999987653 3 356666665542 1222 22222 277899999 68888876
Q ss_pred ecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccC-CC----------ceecCC
Q 005240 105 IPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD-GT----------AKDFGT 173 (706)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~-g~----------~~~lt~ 173 (706)
+.+ +.|.++++. ++ ...+..
T Consensus 78 ~~d-------------------------------------------------g~v~vwd~~~~~~~~~~~~~~~~~~~~~ 108 (351)
T 3f3f_A 78 SYD-------------------------------------------------KTVKLWEEDPDQEECSGRRWNKLCTLND 108 (351)
T ss_dssp ETT-------------------------------------------------SCEEEEEECTTSCTTSSCSEEEEEEECC
T ss_pred cCC-------------------------------------------------CeEEEEecCCCcccccccCcceeeeecc
Confidence 431 456666662 21 222333
Q ss_pred C-ceEeeeeeCCC--CcEEEEEeeccCcccccccccccceEEEEecCCCeeE-EcccCCCCCCCCcccCccCCCCcceee
Q 005240 174 P-AVYTAVEPSPD--QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR-ELCDLPPAEDIPVCYNSVREGMRSISW 249 (706)
Q Consensus 174 ~-~~~~~~~~SpD--G~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~~~~~p~~~~~~~~g~~~~~~ 249 (706)
. ..+..++|+|+ ++.|+..... ..|.+||+..++.. .+......................+.|
T Consensus 109 ~~~~v~~~~~~~~~~~~~l~~~~~d-------------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (351)
T 3f3f_A 109 SKGSLYSVKFAPAHLGLKLACLGND-------------GILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSW 175 (351)
T ss_dssp CSSCEEEEEECCGGGCSEEEEEETT-------------CEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEE
T ss_pred cCCceeEEEEcCCCCCcEEEEecCC-------------CcEEEecCCChHHhccccccccccccccccCCcccceeEEEe
Confidence 3 67889999999 9888866543 37999998754321 111000000000000000122447899
Q ss_pred ecC---CCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceE---EeecccccccceecCCC----ceEEEEeec
Q 005240 250 RAD---KPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEI---LHKLDLRFRSVSWCDDS----LALVNETWY 319 (706)
Q Consensus 250 spd---g~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~---l~~~~~~~~~~~wspDg----~~l~~~~~~ 319 (706)
+|+ +.. |+... .+ ..+..++. ..+.... +..+...+..+.|+|++ +.|+..+ .
T Consensus 176 ~p~~~~~~~-l~~~~-~~-----------~~~~~~~~---~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~-~ 238 (351)
T 3f3f_A 176 CPSRFSPEK-LAVSA-LE-----------QAIIYQRG---KDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGC-K 238 (351)
T ss_dssp CCCSSSCCE-EEEEE-TT-----------EEEEEEEC---TTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEE-T
T ss_pred ccCCCCCcE-EEEec-CC-----------CcEEEEcc---CCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEc-C
Confidence 997 553 44331 11 12333333 3344332 23446678899999998 5666554 2
Q ss_pred cccceEEEEEc
Q 005240 320 KTSQTRTWLVC 330 (706)
Q Consensus 320 ~~~~~~l~~~d 330 (706)
++..+||.+.
T Consensus 239 -dg~i~iwd~~ 248 (351)
T 3f3f_A 239 -DGRIRIFKIT 248 (351)
T ss_dssp -TSCEEEEEEE
T ss_pred -CCeEEEEeCC
Confidence 2445555554
|
| >3i28_A Epoxide hydrolase 2; aromatic hydrocarbons catabolism, detoxification, magnesium, metal-binding, peroxisome; HET: 34N; 1.95A {Homo sapiens} PDB: 1s8o_A* 1zd2_P* 1vj5_A* 1zd4_A* 1zd5_A* 3i1y_A* 1zd3_A* 3koo_A* 3otq_A* 4hai_A* 1cqz_A 1cr6_A* 1ek1_A* 1ek2_A* 3ans_A* 3ant_A* 3pdc_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=3.5e-09 Score=117.25 Aligned_cols=122 Identities=13% Similarity=0.042 Sum_probs=87.7
Q ss_pred ceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEE
Q 005240 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 560 (706)
Q Consensus 481 ~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~ 560 (706)
..+...+...||..++....- . .|+||++||.+.. ...+ ...+..|+++||.|+.
T Consensus 236 ~~~~~~~~~~dg~~l~~~~~g-------~---~p~vv~~HG~~~~-----------~~~~----~~~~~~l~~~G~~v~~ 290 (555)
T 3i28_A 236 DMSHGYVTVKPRVRLHFVELG-------S---GPAVCLCHGFPES-----------WYSW----RYQIPALAQAGYRVLA 290 (555)
T ss_dssp GSEEEEEEEETTEEEEEEEEC-------S---SSEEEEECCTTCC-----------GGGG----TTHHHHHHHTTCEEEE
T ss_pred ccceeEEEeCCCcEEEEEEcC-------C---CCEEEEEeCCCCc-----------hhHH----HHHHHHHHhCCCEEEE
Confidence 445555666689888865552 1 3789999997521 1112 2356778899999999
Q ss_pred cCCCCcCCCCCCCCc----hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCC
Q 005240 561 GPSIPIIGEGDKLPN----DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 636 (706)
Q Consensus 561 ~~~~~~~g~g~~~~~----~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~ 636 (706)
.+.+ |+|.+... ........+|+.++++.+ +.+++.++|||+||++++.++.++|++++++|+.++.
T Consensus 291 ~D~~---G~G~S~~~~~~~~~~~~~~~~d~~~~~~~l------~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~ 361 (555)
T 3i28_A 291 MDMK---GYGESSAPPEIEEYCMEVLCKEMVTFLDKL------GLSQAVFIGHDWGGMLVWYMALFYPERVRAVASLNTP 361 (555)
T ss_dssp ECCT---TSTTSCCCSCGGGGSHHHHHHHHHHHHHHH------TCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred ecCC---CCCCCCCCCCcccccHHHHHHHHHHHHHHc------CCCcEEEEEecHHHHHHHHHHHhChHheeEEEEEccC
Confidence 7765 45555432 223556677777777766 3468999999999999999999999999999988764
|
| >1tht_A Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1.13 | Back alignment and structure |
|---|
Probab=99.07 E-value=1.2e-09 Score=110.92 Aligned_cols=130 Identities=11% Similarity=-0.021 Sum_probs=89.3
Q ss_pred eEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEc
Q 005240 482 KEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAG 561 (706)
Q Consensus 482 ~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~ 561 (706)
.+...++..||..|+++.+.|..-.+. +.|+||++||-+.. . .. ....+..|++.||.|+..
T Consensus 7 ~~~~~i~~~dG~~l~~~~~~p~~~~~~---~~~~VvllHG~g~~--------~---~~----~~~~~~~L~~~G~~Vi~~ 68 (305)
T 1tht_A 7 TIAHVLRVNNGQELHVWETPPKENVPF---KNNTILIASGFARR--------M---DH----FAGLAEYLSTNGFHVFRY 68 (305)
T ss_dssp CEEEEEEETTTEEEEEEEECCCTTSCC---CSCEEEEECTTCGG--------G---GG----GHHHHHHHHTTTCCEEEE
T ss_pred ceEEEEEcCCCCEEEEEEecCcccCCC---CCCEEEEecCCccC--------c---hH----HHHHHHHHHHCCCEEEEe
Confidence 455667777999999999987641111 24789999995310 0 11 124566788899999997
Q ss_pred CCCCcCCCCCCCCc--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCC
Q 005240 562 PSIPIIGEGDKLPN--DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 636 (706)
Q Consensus 562 ~~~~~~g~g~~~~~--~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~ 636 (706)
+.+|.. |.+... .........|+.++++++.+. +..++.++||||||++++.++.+ | +++++|+.++.
T Consensus 69 D~rGh~--G~S~~~~~~~~~~~~~~D~~~~~~~l~~~---~~~~~~lvGhSmGG~iA~~~A~~-~-~v~~lvl~~~~ 138 (305)
T 1tht_A 69 DSLHHV--GLSSGSIDEFTMTTGKNSLCTVYHWLQTK---GTQNIGLIAASLSARVAYEVISD-L-ELSFLITAVGV 138 (305)
T ss_dssp CCCBCC----------CCCHHHHHHHHHHHHHHHHHT---TCCCEEEEEETHHHHHHHHHTTT-S-CCSEEEEESCC
T ss_pred eCCCCC--CCCCCcccceehHHHHHHHHHHHHHHHhC---CCCceEEEEECHHHHHHHHHhCc-c-CcCEEEEecCc
Confidence 766432 433221 122456678999999999754 34789999999999999999988 7 88998887765
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.07 E-value=9.5e-09 Score=106.82 Aligned_cols=260 Identities=10% Similarity=0.090 Sum_probs=146.1
Q ss_pred ceeEeecCCCCCCCCeeeeecCC---CCCcccceeeCCC----CCeEEEEeeccccccccCCceeEEEEEcCCCceeecc
Q 005240 6 GIGIHRLLPDDSLGPEKEVHGYP---DGAKINFVSWSPD----GKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLF 78 (706)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~i~~~~---~~~~~~~~~~SPD----G~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt 78 (706)
.|.|+++... +..+.+.... ....+..+.|||| |+.|+... ....|.++++.+++.....
T Consensus 45 ~v~vw~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~----------~dg~i~v~d~~~~~~~~~~ 111 (366)
T 3k26_A 45 RVTLYECHSQ---GEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG----------SRGIIRIINPITMQCIKHY 111 (366)
T ss_dssp EEEEEEECGG---GCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE----------TTCEEEEECTTTCCEEEEE
T ss_pred EEEEEEcCCC---cEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec----------CCCEEEEEEchhceEeeee
Confidence 5788888651 2333443222 2235888999999 55676653 2357888898887765543
Q ss_pred c-CCCccccccccceEEec-CCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhccc
Q 005240 79 E-SPDICLNAVFGSFVWVN-NSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTT 156 (706)
Q Consensus 79 ~-~~~~~~~~~~~~~~wSp-Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 156 (706)
. ... .+..+.|+| +++.|+..+. .
T Consensus 112 ~~~~~-----~i~~~~~~~~~~~~l~s~~~-------------------------------------------------d 137 (366)
T 3k26_A 112 VGHGN-----AINELKFHPRDPNLLLSVSK-------------------------------------------------D 137 (366)
T ss_dssp ESCCS-----CEEEEEECSSCTTEEEEEET-------------------------------------------------T
T ss_pred cCCCC-----cEEEEEECCCCCCEEEEEeC-------------------------------------------------C
Confidence 3 222 377899999 8898887642 1
Q ss_pred ceEEEEcc-CCCc-eec---CCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccC---
Q 005240 157 AQLVLGSL-DGTA-KDF---GTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDL--- 227 (706)
Q Consensus 157 ~~l~~~~l-~g~~-~~l---t~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~--- 227 (706)
+.|.++++ +++. ..+ ... ..+..++|+|||++|+..... ..|.+|++.+++.......
T Consensus 138 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------------g~i~i~d~~~~~~~~~~~~~~~ 204 (366)
T 3k26_A 138 HALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMD-------------HSLKLWRINSKRMMNAIKESYD 204 (366)
T ss_dssp SCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETT-------------SCEEEEESCSHHHHHHHHHHHT
T ss_pred CeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCC-------------CCEEEEECCCCccccccceeEE
Confidence 56888888 4533 333 223 678999999999998766543 3789999986532211110
Q ss_pred --CCCCC---------CCcccC--ccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCC----
Q 005240 228 --PPAED---------IPVCYN--SVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEK---- 290 (706)
Q Consensus 228 --~~~~~---------~p~~~~--~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~---- 290 (706)
+.... .+.+.. .....+..+.|+ ++. |+ .... .+.|.+||+ ..+.
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~-l~-~~~~-----------d~~i~~wd~---~~~~~~~~ 266 (366)
T 3k26_A 205 YNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDL-IL-SKSC-----------ENAIVCWKP---GKMEDDID 266 (366)
T ss_dssp CCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTE-EE-EECS-----------SSEEEEEEE---SSTTCCGG
T ss_pred ecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCE-EE-EEec-----------CCEEEEEeC---CCcccccc
Confidence 00000 000000 011224466777 433 33 2111 124667776 2222
Q ss_pred -----------ceEEeecccccccceecCC--CceEEEEeeccccceEEEEEcCCCCCCCceee--ecCcccccccCCCC
Q 005240 291 -----------PEILHKLDLRFRSVSWCDD--SLALVNETWYKTSQTRTWLVCPGSKDVAPRVL--FDRVFENVYSDPGS 355 (706)
Q Consensus 291 -----------~~~l~~~~~~~~~~~wspD--g~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l--~~~~~~~~~~~~~~ 355 (706)
...+......+..+.|+|| ++.|+.... ...|.++|+.+++.....+ +.... .....
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~----dg~i~vwd~~~~~~~~~~~~~~~~~~----~~~~v 338 (366)
T 3k26_A 267 KIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQ----VGKLYVWDLEVEDPHKAKCTTLTHHK----CGAAI 338 (366)
T ss_dssp GCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECT----TSCEEEEECCSSSGGGCEEEEECCTT----CCSCE
T ss_pred ccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEec----CCcEEEEECCCCCCccccceEEcccc----cCCce
Confidence 1223334567888999999 998887642 2246677777642111111 11110 00112
Q ss_pred CceEeccCCCEEEEee
Q 005240 356 PMMTRTSTGTNVIAKI 371 (706)
Q Consensus 356 ~~~~~s~dg~~l~~~~ 371 (706)
..+.|+|||++|+...
T Consensus 339 ~~~~~s~~~~~l~s~~ 354 (366)
T 3k26_A 339 RQTSFSRDSSILIAVC 354 (366)
T ss_dssp EEEEECTTSSEEEEEE
T ss_pred EEEEeCCCCCeEEEEe
Confidence 2478999999887764
|
| >3h2g_A Esterase; xanthomonas oryzae PV. oryzae, cell WALL degrading enzyme, RICE, virulence, innate immune responses, pathogenesis; 1.86A {Xanthomonas oryzae PV} PDB: 3h2j_A 3h2k_A* 3h2h_A 3h2i_A | Back alignment and structure |
|---|
Probab=99.06 E-value=1.1e-09 Score=116.06 Aligned_cols=151 Identities=15% Similarity=0.205 Sum_probs=92.3
Q ss_pred CCceEEEEEEccC--C--eEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHC
Q 005240 479 SLQKEMIKYQRKD--G--VPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLAR 554 (706)
Q Consensus 479 ~~~~~~~~~~~~d--g--~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 554 (706)
.+....+.|.+.+ | ..+.++++.|.+..+ .+++|+||++||.+..... .....+. ........+..|+++
T Consensus 43 ~v~~~~i~y~t~~~~g~~~~~~g~l~~P~~~~~--~~~~P~vv~~HG~~~~~~~---~~~~~~~-~~~~~~~~~~~l~~~ 116 (397)
T 3h2g_A 43 NVRVAEFTYATIGVEGEPATASGVLLIPGGERC--SGPYPLLGWGHPTEALRAQ---EQAKEIR-DAKGDDPLVTRLASQ 116 (397)
T ss_dssp EEEEEEEEEEEECTTSCEEEEEEEEEEEECTTC--CSCEEEEEEECCCCCBTTC---CHHHHHH-HTTTCSHHHHTTGGG
T ss_pred CeEEEEEEEEecCCCCCeEEEEEEEEeCCCCCC--CCCCcEEEEeCCCcCCCCc---ccccccc-cccchHHHHHHHHHC
Confidence 3456667776654 4 469999999987532 2468999999997532100 0000000 001123456778899
Q ss_pred CeEEEEcCCCCcCCCCCCCC------chhhHHHHHHHHHHHHHHHHHc-CCCCCCcEEEEEechHHHHHHHHHH-hCC--
Q 005240 555 RFAVLAGPSIPIIGEGDKLP------NDRFVEQLVSSAEAAVEEVVRR-GVADPSRIAVGGHSYGAFMTAHLLA-HAP-- 624 (706)
Q Consensus 555 G~~v~~~~~~~~~g~g~~~~------~~~~~~~~~~D~~~~~~~l~~~-~~id~~~i~i~G~S~GG~~a~~~~~-~~p-- 624 (706)
||.|+.++++|. |.+.. ........+.|...++..+.++ +..|+++|+++||||||+++++++. ..+
T Consensus 117 G~~V~~~D~~G~---G~s~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~a~~~~~~~ 193 (397)
T 3h2g_A 117 GYVVVGSDYLGL---GKSNYAYHPYLHSASEASATIDAMRAARSVLQHLKTPLSGKVMLSGYSQGGHTAMATQREIEAHL 193 (397)
T ss_dssp TCEEEEECCTTS---TTCCCSSCCTTCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEETHHHHHHHHHHHHHHHHC
T ss_pred CCEEEEecCCCC---CCCCCCccchhhhhhHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEECHHHHHHHHHHHHhhhhc
Confidence 999999887744 33311 1111123344555555555543 6556789999999999999988862 222
Q ss_pred --C-ceeEEEeccCCCC
Q 005240 625 --H-LFCCGIARSGSYN 638 (706)
Q Consensus 625 --~-~~~a~v~~~~~~d 638 (706)
+ .+.+++..++.++
T Consensus 194 ~~~~~~~~~~~~~~~~~ 210 (397)
T 3h2g_A 194 SKEFHLVASAPISGPYA 210 (397)
T ss_dssp TTTSEEEEEEEESCCSS
T ss_pred CcCcceEEEeccccccc
Confidence 1 5788888777655
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.06 E-value=2.8e-08 Score=103.82 Aligned_cols=229 Identities=10% Similarity=0.069 Sum_probs=124.4
Q ss_pred ceEEEEccC-C--C-ceecCCC-ceEeeeeeCCC--CcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCC
Q 005240 157 AQLVLGSLD-G--T-AKDFGTP-AVYTAVEPSPD--QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPP 229 (706)
Q Consensus 157 ~~l~~~~l~-g--~-~~~lt~~-~~~~~~~~SpD--G~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 229 (706)
+.|.++++. + + ...+... ..+..++|+|+ ++.|+..+.+ ..|.+|++.+++...+.....
T Consensus 33 g~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d-------------g~v~iwd~~~~~~~~~~~~~~ 99 (379)
T 3jrp_A 33 KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD-------------GKVLIWKEENGRWSQIAVHAV 99 (379)
T ss_dssp SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT-------------SCEEEEEEETTEEEEEEEECC
T ss_pred CcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccC-------------CEEEEEEcCCCceeEeeeecC
Confidence 456666663 2 2 2334434 67889999988 8888765543 379999998775333222221
Q ss_pred CCCCCcccCccCCCCcceeeecC--CCceEEEEEeccCCCCccccCccceeeeecCCCCCCC---CceEEeecccccccc
Q 005240 230 AEDIPVCYNSVREGMRSISWRAD--KPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGE---KPEILHKLDLRFRSV 304 (706)
Q Consensus 230 ~~~~p~~~~~~~~g~~~~~~spd--g~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~---~~~~l~~~~~~~~~~ 304 (706)
.. ..+..+.|+|+ +.. |+... . ...|.++|+ ..+ ....+......+..+
T Consensus 100 ~~----------~~v~~~~~~~~~~~~~-l~~~~-~-----------d~~i~v~d~---~~~~~~~~~~~~~~~~~v~~~ 153 (379)
T 3jrp_A 100 HS----------ASVNSVQWAPHEYGPL-LLVAS-S-----------DGKVSVVEF---KENGTTSPIIIDAHAIGVNSA 153 (379)
T ss_dssp CS----------SCEEEEEECCGGGCSE-EEEEE-T-----------TSEEEEEEC---CTTSCCCEEEEECCTTCEEEE
T ss_pred CC----------cceEEEEeCCCCCCCE-EEEec-C-----------CCcEEEEec---CCCCceeeEEecCCCCceEEE
Confidence 11 22457899999 665 44331 1 124778888 333 222344567788899
Q ss_pred eecC-------------CCceEEEEeeccccceEEEEEcCCCCCCCceee--ecCcccccccCCCCCceEeccC---CCE
Q 005240 305 SWCD-------------DSLALVNETWYKTSQTRTWLVCPGSKDVAPRVL--FDRVFENVYSDPGSPMMTRTST---GTN 366 (706)
Q Consensus 305 ~wsp-------------Dg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~s~d---g~~ 366 (706)
.|+| |+..|+..+.+ +. |.++|+.++......+ ...... ....+.|+|+ +++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d--g~--i~i~d~~~~~~~~~~~~~~~~h~~------~v~~~~~sp~~~~~~~ 223 (379)
T 3jrp_A 154 SWAPATIEEDGEHNGTKESRKFVTGGAD--NL--VKIWKYNSDAQTYVLESTLEGHSD------WVRDVAWSPTVLLRSY 223 (379)
T ss_dssp EECCCC----------CTTCEEEEEETT--SC--EEEEEEETTTTEEEEEEEECCCSS------CEEEEEECCCCSSSEE
T ss_pred EEcCccccccccccCCCCCCEEEEEeCC--Ce--EEEEEecCCCcceeeEEEEecccC------cEeEEEECCCCCCCCe
Confidence 9999 68888876522 33 4455554432111111 111111 1224778999 676
Q ss_pred EEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCc---eeeeecccchhhhhhhhhhccCCCceecccCCCEEEE
Q 005240 367 VIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGS---KERIWESNREKYFETAVALVFGQGEEDINLNQLKILT 443 (706)
Q Consensus 367 l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~ 443 (706)
|+..... + .+..+|+.+++ ...+..... .......+.|+||++.|+.
T Consensus 224 l~s~~~d----g-----------------~i~iwd~~~~~~~~~~~~~~~~~---------~~~~v~~~~~s~~g~~l~~ 273 (379)
T 3jrp_A 224 LASVSQD----R-----------------TCIIWTQDNEQGPWKKTLLKEEK---------FPDVLWRASWSLSGNVLAL 273 (379)
T ss_dssp EEEEETT----S-----------------CEEEEEESSTTSCCEEEESSSSC---------CSSCEEEEEECSSSCCEEE
T ss_pred EEEEeCC----C-----------------EEEEEeCCCCCccceeeeecccc---------CCCcEEEEEEcCCCCEEEE
Confidence 6655411 1 24445555442 112211100 0111235789999998877
Q ss_pred EEecCCCCcEEEEEECCC-CceeEee
Q 005240 444 SKESKTEITQYHILSWPL-KKSSQIT 468 (706)
Q Consensus 444 ~~~~~~~p~~v~~~~~~~-~~~~~lt 468 (706)
...+. .|++|++.. ++...+.
T Consensus 274 ~~~dg----~i~iw~~~~~~~~~~~~ 295 (379)
T 3jrp_A 274 SGGDN----KVTLWKENLEGKWEPAG 295 (379)
T ss_dssp EESSS----SEEEEEEEETTEEEEEE
T ss_pred ecCCC----cEEEEeCCCCCcccccc
Confidence 65543 377777653 3333333
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.05 E-value=1e-07 Score=98.51 Aligned_cols=282 Identities=12% Similarity=0.013 Sum_probs=146.9
Q ss_pred cceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCC--
Q 005240 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD-- 82 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~-- 82 (706)
..|++.|..+ ++. +..++.+... .+++||||++|+.+.........+.....|.++|+++++...-...+.
T Consensus 59 ~~V~ViD~~t----~~v--~~~I~vG~~P-~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~ 131 (386)
T 3sjl_D 59 TQQFVIDGEA----GRV--IGMIDGGFLP-NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAP 131 (386)
T ss_dssp EEEEEEETTT----TEE--EEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCC
T ss_pred CEEEEEECCC----CeE--EEEEECCCCC-cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCcc
Confidence 4677877755 443 3334555544 499999999996654210000000123569999999887544221111
Q ss_pred c-cccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEE
Q 005240 83 I-CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (706)
Q Consensus 83 ~-~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~ 161 (706)
+ ........+.+||||++||+.... ....|.+
T Consensus 132 r~~~g~~P~~~a~spDGk~lyVan~~-----------------------------------------------~~~~VsV 164 (386)
T 3sjl_D 132 RFLVGTYPWMTSLTPDGKTLLFYQFS-----------------------------------------------PAPAVGV 164 (386)
T ss_dssp CCCBSCCGGGEEECTTSSEEEEEECS-----------------------------------------------SSCEEEE
T ss_pred ccccCCCCceEEEcCCCCEEEEEEcC-----------------------------------------------CCCeEEE
Confidence 0 000125678999999998875210 1156888
Q ss_pred Ecc-CCC-ceecCCCce--------EeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCC
Q 005240 162 GSL-DGT-AKDFGTPAV--------YTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAE 231 (706)
Q Consensus 162 ~~l-~g~-~~~lt~~~~--------~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~ 231 (706)
+|+ +++ ...+..++. ...++.++||+.+++...... .+ + +. ...+.. .+
T Consensus 165 ID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g------------~v-~-~~----~~~~~~---~~ 223 (386)
T 3sjl_D 165 VDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEG------------TP-E-IT----HTEVFH---PE 223 (386)
T ss_dssp EETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSS------------CC-E-EE----ECCCCS---CT
T ss_pred EECCCCcEEEEEECCCcceeecCCCceeEEECCCCCEEEEECCCCC------------eE-E-Ee----ecceec---cc
Confidence 888 453 333432211 112367788876665543211 11 0 00 000100 11
Q ss_pred CCCcccCccCCCCcceeee-cCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeec-------------
Q 005240 232 DIPVCYNSVREGMRSISWR-ADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL------------- 297 (706)
Q Consensus 232 ~~p~~~~~~~~g~~~~~~s-pdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~------------- 297 (706)
..|.+. ...|. +||+ ++|++. .+.++++|. .++.++.+...
T Consensus 224 ~~~~~~--------~~~~~~~dG~--~~~vs~------------~g~V~v~d~---~~~~~~v~~~~~~~~~~~~~~g~~ 278 (386)
T 3sjl_D 224 DEFLIN--------HPAYSQKAGR--LVWPTY------------TGKIHQIDL---SSGDAKFLPAVEALTEAERADGWR 278 (386)
T ss_dssp TSCBCS--------CCEEETTTTE--EEEEBT------------TSEEEEEEC---TTSSCEECCCEESSCHHHHHTTEE
T ss_pred cccccc--------cceeEcCCCc--EEEEeC------------CCEEEEEEC---CCCcceeecceecccccccccccc
Confidence 112111 23564 6774 666642 124888887 55544333211
Q ss_pred ccccccceecCCCceEEEEeecc------ccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEee
Q 005240 298 DLRFRSVSWCDDSLALVNETWYK------TSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 298 ~~~~~~~~wspDg~~l~~~~~~~------~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 371 (706)
......+..++++++++...... ....+||.+|+++.+...+........ .+.+|+||+.+++..
T Consensus 279 p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~---------~lavs~D~~~~ly~t 349 (386)
T 3sjl_D 279 PGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEID---------SINVSQDEKPLLYAL 349 (386)
T ss_dssp ECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEEC---------EEEECSSSSCEEEEE
T ss_pred CCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcc---------eEEECCCCCeEEEEE
Confidence 22334566788988888764321 234689999999964222222222111 266799998443332
Q ss_pred eccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeeeccc
Q 005240 372 KKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESN 414 (706)
Q Consensus 372 ~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~ 414 (706)
.. ....|..+|..+++..+-+...
T Consensus 350 n~-------------------~~~~VsViD~~t~k~~~~i~~~ 373 (386)
T 3sjl_D 350 ST-------------------GDKTLYIHDAESGEELRSVNQL 373 (386)
T ss_dssp ET-------------------TTTEEEEEETTTCCEEEEECCC
T ss_pred cC-------------------CCCeEEEEECCCCcEEEEecCC
Confidence 11 1124677899888876555443
|
| >3fsg_A Alpha/beta superfamily hydrolase; PF00561, MCSG, PSI, PSI-2, structural genomics, protein structure initiative, midwest for structural genomics; 2.00A {Oenococcus oeni} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.7e-09 Score=107.36 Aligned_cols=80 Identities=16% Similarity=0.235 Sum_probs=61.5
Q ss_pred HHHH-CCeEEEEcCCCCcCCCCCCCCch-hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCce
Q 005240 550 IFLA-RRFAVLAGPSIPIIGEGDKLPND-RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLF 627 (706)
Q Consensus 550 ~l~~-~G~~v~~~~~~~~~g~g~~~~~~-~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~ 627 (706)
.|++ .||.|+..+.+ |+|.+.... .......+|+.++++.+. +..++.++|||+||.+++.++.++|+++
T Consensus 43 ~l~~~~g~~v~~~d~~---G~G~s~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~l~G~S~Gg~~a~~~a~~~p~~v 114 (272)
T 3fsg_A 43 PLSNVGQYQRIYLDLP---GMGNSDPISPSTSDNVLETLIEAIEEII-----GARRFILYGHSYGGYLAQAIAFHLKDQT 114 (272)
T ss_dssp TSTTSTTSEEEEECCT---TSTTCCCCSSCSHHHHHHHHHHHHHHHH-----TTCCEEEEEEEHHHHHHHHHHHHSGGGE
T ss_pred HHhccCceEEEEecCC---CCCCCCCCCCCCHHHHHHHHHHHHHHHh-----CCCcEEEEEeCchHHHHHHHHHhChHhh
Confidence 3455 69999996665 455554332 345667778877777742 3478999999999999999999999999
Q ss_pred eEEEeccCCC
Q 005240 628 CCGIARSGSY 637 (706)
Q Consensus 628 ~a~v~~~~~~ 637 (706)
+++++.+|..
T Consensus 115 ~~lvl~~~~~ 124 (272)
T 3fsg_A 115 LGVFLTCPVI 124 (272)
T ss_dssp EEEEEEEECS
T ss_pred heeEEECccc
Confidence 9999999874
|
| >3ia2_A Arylesterase; alpha-beta hydrolase fold, transition state analog, hydrolas oxidoreductase, peroxidase; 1.65A {Pseudomonas fluorescens} SCOP: c.69.1.12 PDB: 1va4_A 3t52_A* 3t4u_A* 3hi4_A 3hea_A | Back alignment and structure |
|---|
Probab=99.04 E-value=3.5e-09 Score=105.48 Aligned_cols=116 Identities=13% Similarity=0.110 Sum_probs=77.6
Q ss_pred EEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCc
Q 005240 487 YQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPI 566 (706)
Q Consensus 487 ~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~ 566 (706)
+...||..|....+- .+ |.||++||.+.. ...+ ...+..|++.||.|+..+.+
T Consensus 3 ~~~~~g~~l~y~~~G-------~g---~~vvllHG~~~~-----------~~~w----~~~~~~l~~~g~~vi~~D~~-- 55 (271)
T 3ia2_A 3 FVAKDGTQIYFKDWG-------SG---KPVLFSHGWLLD-----------ADMW----EYQMEYLSSRGYRTIAFDRR-- 55 (271)
T ss_dssp EECTTSCEEEEEEES-------SS---SEEEEECCTTCC-----------GGGG----HHHHHHHHTTTCEEEEECCT--
T ss_pred EEcCCCCEEEEEccC-------CC---CeEEEECCCCCc-----------HHHH----HHHHHHHHhCCceEEEecCC--
Confidence 566789888766552 11 347789996421 0111 13456677899999996665
Q ss_pred CCCCCCCCc--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHH-hCCCceeEEEeccCC
Q 005240 567 IGEGDKLPN--DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLA-HAPHLFCCGIARSGS 636 (706)
Q Consensus 567 ~g~g~~~~~--~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~-~~p~~~~a~v~~~~~ 636 (706)
|+|.+... ........+|+.+.++.+ +.+++.++||||||++++.++. +.|+++++++..++.
T Consensus 56 -G~G~S~~~~~~~~~~~~a~d~~~~l~~l------~~~~~~lvGhS~GG~~~~~~~a~~~p~~v~~lvl~~~~ 121 (271)
T 3ia2_A 56 -GFGRSDQPWTGNDYDTFADDIAQLIEHL------DLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLGAV 121 (271)
T ss_dssp -TSTTSCCCSSCCSHHHHHHHHHHHHHHH------TCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCC
T ss_pred -CCccCCCCCCCCCHHHHHHHHHHHHHHh------CCCCceEEEEcccHHHHHHHHHHhCCcccceEEEEccC
Confidence 55555332 233566677888877766 3468999999999986666555 458999999988754
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=1.7e-07 Score=103.21 Aligned_cols=203 Identities=8% Similarity=-0.002 Sum_probs=123.8
Q ss_pred cceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCCC
Q 005240 34 NFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPP 113 (706)
Q Consensus 34 ~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~ 113 (706)
..+.|+.|...++|+.+ .+...|+++|.++++......... .+..+.+||||++||+...
T Consensus 157 ~~~~~~~d~~~~~~V~~--------~~~~~V~viD~~t~~v~~~i~~g~-----~p~~v~~SpDGr~lyv~~~------- 216 (567)
T 1qks_A 157 TQQMNDWDLENLFSVTL--------RDAGQIALIDGSTYEIKTVLDTGY-----AVHISRLSASGRYLFVIGR------- 216 (567)
T ss_dssp SSCCSCCCGGGEEEEEE--------TTTTEEEEEETTTCCEEEEEECSS-----CEEEEEECTTSCEEEEEET-------
T ss_pred cccccccCCCceEEEEe--------CCCCeEEEEECCCCeEEEEEeCCC-----CccceEECCCCCEEEEEcC-------
Confidence 35678888777888876 445799999999887654221121 1557899999999886531
Q ss_pred CCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccC---C-CceecCCCceEeeeeeC----CC
Q 005240 114 KKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD---G-TAKDFGTPAVYTAVEPS----PD 185 (706)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~---g-~~~~lt~~~~~~~~~~S----pD 185 (706)
.+.|.++|+. + ....+..+.....+++| ||
T Consensus 217 ------------------------------------------dg~V~viD~~~~t~~~v~~i~~G~~P~~ia~s~~~~pD 254 (567)
T 1qks_A 217 ------------------------------------------DGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWE 254 (567)
T ss_dssp ------------------------------------------TSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCT
T ss_pred ------------------------------------------CCeEEEEECCCCCCcEeEEEecCCCCceeEEccccCCC
Confidence 1578888983 3 23344444567789999 79
Q ss_pred CcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCC--CC---CCcccCccCCCCcceeeecCCCceEEEE
Q 005240 186 QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPA--ED---IPVCYNSVREGMRSISWRADKPSTLYWV 260 (706)
Q Consensus 186 G~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~--~~---~p~~~~~~~~g~~~~~~spdg~~~l~~~ 260 (706)
|+++++.... ...+.++|..+.++.......+. +. .|. .....+..|+++.. ++ +
T Consensus 255 Gk~l~v~n~~------------~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~------~rva~i~~s~~~~~-~v-v 314 (567)
T 1qks_A 255 DKYAIAGAYW------------PPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPE------PRVAAILASHYRPE-FI-V 314 (567)
T ss_dssp TTEEEEEEEE------------TTEEEEEETTTCCEEEEEECCEECTTTCCEESC------CCEEEEEECSSSSE-EE-E
T ss_pred CCEEEEEEcc------------CCeEEEEECCCCcEEEEEeccccccccccccCC------CceEEEEEcCCCCE-EE-E
Confidence 9999877654 24788999876554432221110 00 010 01225667787764 33 3
Q ss_pred EeccCCCCccccCccceeeeecCCCCCCCCceEEee--cccccccceecCCCceEEEEeeccccceEEEEEcCCCC
Q 005240 261 EAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK--LDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK 334 (706)
Q Consensus 261 ~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~--~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~ 334 (706)
... ..+.|+++|. ...+...++. .........|+|||++++.+.. ....|.++|++++
T Consensus 315 ~~~----------~~g~v~~vd~---~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~---~sn~V~ViD~~t~ 374 (567)
T 1qks_A 315 NVK----------ETGKILLVDY---TDLNNLKTTEISAERFLHDGGLDGSHRYFITAAN---ARNKLVVIDTKEG 374 (567)
T ss_dssp EET----------TTTEEEEEET---TCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEG---GGTEEEEEETTTT
T ss_pred Eec----------CCCeEEEEec---CCCccceeeeeeccccccCceECCCCCEEEEEeC---CCCeEEEEECCCC
Confidence 211 2235777776 2222111221 2233446789999999887653 2346889999984
|
| >1uxo_A YDEN protein; hydrolase, A/B hydrolase, esterase, PSI, protein structure initiative, MCSG, midwest center for structural genomics; 1.8A {Bacillus subtilis} SCOP: c.69.1.31 | Back alignment and structure |
|---|
Probab=99.04 E-value=1.2e-09 Score=102.79 Aligned_cols=154 Identities=14% Similarity=-0.003 Sum_probs=91.7
Q ss_pred ceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHH
Q 005240 513 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEE 592 (706)
Q Consensus 513 ~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~ 592 (706)
.|+||++||.+... . ..+.......|++.||.|+..+.+.+ + . . .....++|+...++.
T Consensus 4 ~p~vv~~HG~~~~~-----------~--~~~~~~~~~~l~~~g~~v~~~d~~~~-~--~--~---~~~~~~~~~~~~~~~ 62 (192)
T 1uxo_A 4 TKQVYIIHGYRASS-----------T--NHWFPWLKKRLLADGVQADILNMPNP-L--Q--P---RLEDWLDTLSLYQHT 62 (192)
T ss_dssp CCEEEEECCTTCCT-----------T--STTHHHHHHHHHHTTCEEEEECCSCT-T--S--C---CHHHHHHHHHTTGGG
T ss_pred CCEEEEEcCCCCCc-----------c--hhHHHHHHHHHHhCCcEEEEecCCCC-C--C--C---CHHHHHHHHHHHHHh
Confidence 47899999964210 0 01111222457789999999777611 1 1 1 123334443333322
Q ss_pred HHHcCCCCCCcEEEEEechHHHHHHHHHHhCCC--ceeEEEeccCCCCCC--------C--CCccch-------------
Q 005240 593 VVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH--LFCCGIARSGSYNKT--------L--TPFGFQ------------- 647 (706)
Q Consensus 593 l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~--~~~a~v~~~~~~d~~--------~--~~~~~~------------- 647 (706)
+ ..++.++|||+||.+++.++.++|+ ++++++..+|..... + .+..+.
T Consensus 63 ------~-~~~~~l~G~S~Gg~~a~~~a~~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~ 135 (192)
T 1uxo_A 63 ------L-HENTYLVAHSLGCPAILRFLEHLQLRAALGGIILVSGFAKSLPTLQMLDEFTQGSFDHQKIIESAKHRAVIA 135 (192)
T ss_dssp ------C-CTTEEEEEETTHHHHHHHHHHTCCCSSCEEEEEEETCCSSCCTTCGGGGGGTCSCCCHHHHHHHEEEEEEEE
T ss_pred ------c-cCCEEEEEeCccHHHHHHHHHHhcccCCccEEEEeccCCCccccchhhhhhhhcCCCHHHHHhhcCCEEEEe
Confidence 2 4789999999999999999999999 999999999865411 0 011000
Q ss_pred -------HHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHhcc
Q 005240 648 -------AERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCLS 697 (706)
Q Consensus 648 -------~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~~~~l~~ 697 (706)
+.+..+.+.+.- ..+++++|+++|.+..... ..+.++.+||.+++..
T Consensus 136 g~~D~~~~~~~~~~~~~~~-~~~~~~~~~~gH~~~~~~~--~~~~~~~~~l~~~l~~ 189 (192)
T 1uxo_A 136 SKDDQIVPFSFSKDLAQQI-DAALYEVQHGGHFLEDEGF--TSLPIVYDVLTSYFSK 189 (192)
T ss_dssp ETTCSSSCHHHHHHHHHHT-TCEEEEETTCTTSCGGGTC--SCCHHHHHHHHHHHHC
T ss_pred cCCCCcCCHHHHHHHHHhc-CceEEEeCCCcCccccccc--ccHHHHHHHHHHHHHH
Confidence 002223333322 5689999999998753211 1223466777776643
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.04 E-value=9.6e-08 Score=98.12 Aligned_cols=256 Identities=12% Similarity=0.012 Sum_probs=144.0
Q ss_pred ceeEeecCCCCCCCCeeeeecCCC-CCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCcc
Q 005240 6 GIGIHRLLPDDSLGPEKEVHGYPD-GAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (706)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~i~~~~~-~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~ 84 (706)
.|.|+++.... ......+..+.. ...+....|||||+.|+.... ...|.+++...+...........
T Consensus 62 ~i~vWd~~~~~-~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~----------d~~i~~~~~~~~~~~~~~~~~~~- 129 (340)
T 4aow_A 62 TIIMWKLTRDE-TNYGIPQRALRGHSHFVSDVVISSDGQFALSGSW----------DGTLRLWDLTTGTTTRRFVGHTK- 129 (340)
T ss_dssp CEEEEEECCSS-SCSEEEEEEECCCSSCEEEEEECTTSSEEEEEET----------TSEEEEEETTTTEEEEEEECCSS-
T ss_pred eEEEEECCCCC-cccceeeEEEeCCCCCEEEEEECCCCCEEEEEcc----------cccceEEeecccceeeeecCCCC-
Confidence 57888887621 111122222222 235888999999999987642 24677778776655444322221
Q ss_pred ccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc
Q 005240 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (706)
Q Consensus 85 ~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l 164 (706)
......++++++.|+..+.+ +.+.++++
T Consensus 130 ---~~~~~~~~~~~~~l~s~s~d-------------------------------------------------~~~~~~d~ 157 (340)
T 4aow_A 130 ---DVLSVAFSSDNRQIVSGSRD-------------------------------------------------KTIKLWNT 157 (340)
T ss_dssp ---CEEEEEECTTSSCEEEEETT-------------------------------------------------SCEEEECT
T ss_pred ---ceeEEEEeecCccceeecCC-------------------------------------------------CeEEEEEe
Confidence 14566789999988765421 34556676
Q ss_pred CC--CceecCCC--ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCcc
Q 005240 165 DG--TAKDFGTP--AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240 (706)
Q Consensus 165 ~g--~~~~lt~~--~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~ 240 (706)
.+ ........ ..+..++|++++...++.+... ...|.+|++...+.........
T Consensus 158 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~-----------d~~i~i~d~~~~~~~~~~~~h~----------- 215 (340)
T 4aow_A 158 LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGW-----------DKLVKVWNLANCKLKTNHIGHT----------- 215 (340)
T ss_dssp TSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEET-----------TSCEEEEETTTTEEEEEECCCS-----------
T ss_pred CCCceEEEEeccccCcccceEEccCCCCcEEEEEcC-----------CCEEEEEECCCCceeeEecCCC-----------
Confidence 44 22222222 5677888999886544333322 2478999998765543322210
Q ss_pred CCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeecc
Q 005240 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYK 320 (706)
Q Consensus 241 ~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~ 320 (706)
..+..+.|+||++. |+.. .. ...|.+||+ ...+..........+..+.|+|++..++... +
T Consensus 216 -~~v~~~~~s~~~~~-l~s~-s~-----------Dg~i~iwd~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-d- 276 (340)
T 4aow_A 216 -GYLNTVTVSPDGSL-CASG-GK-----------DGQAMLWDL---NEGKHLYTLDGGDIINALCFSPNRYWLCAAT-G- 276 (340)
T ss_dssp -SCEEEEEECTTSSE-EEEE-ET-----------TCEEEEEET---TTTEEEEEEECSSCEEEEEECSSSSEEEEEE-T-
T ss_pred -CcEEEEEECCCCCE-EEEE-eC-----------CCeEEEEEe---ccCceeeeecCCceEEeeecCCCCceeeccC-C-
Confidence 12447899999985 4422 11 124788888 4444333344456678889999987655432 1
Q ss_pred ccceEEEEEcCCCCCCCceeeecCccccc---ccCCCCCceEeccCCCEEEEee
Q 005240 321 TSQTRTWLVCPGSKDVAPRVLFDRVFENV---YSDPGSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 321 ~~~~~l~~~d~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~s~dg~~l~~~~ 371 (706)
..|.++|+.+. ............. ........+.|+|||++|+...
T Consensus 277 ---~~i~iwd~~~~--~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs 325 (340)
T 4aow_A 277 ---PSIKIWDLEGK--IIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGY 325 (340)
T ss_dssp ---TEEEEEETTTT--EEEEEECCC-------CCCCCEEEEEECTTSSEEEEEE
T ss_pred ---CEEEEEECCCC--eEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEe
Confidence 24666777763 1111111111100 0111233578999999887654
|
| >1p0i_A Cholinesterase; serine hydrolase, butyrate, hydrolase; HET: NAG FUC MES; 2.00A {Homo sapiens} SCOP: c.69.1.1 PDB: 1p0m_A* 1p0p_A* 1p0q_A* 1xlu_A* 1xlv_A* 1xlw_A* 2wsl_A* 2pm8_A* 3djy_A* 3dkk_A* 2wij_A* 2wif_A* 2wik_A* 2y1k_A* 2j4c_A* 2xmb_A* 2xmc_A* 2xmd_A* 2xmg_A* 2wig_A* ... | Back alignment and structure |
|---|
Probab=99.04 E-value=3.6e-10 Score=123.59 Aligned_cols=132 Identities=19% Similarity=0.233 Sum_probs=91.8
Q ss_pred ccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHH-CCeEEEEcCCC-Cc
Q 005240 489 RKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA-RRFAVLAGPSI-PI 566 (706)
Q Consensus 489 ~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~G~~v~~~~~~-~~ 566 (706)
+.|...+ -+|.|.... .++|+||++|||++..|+..... .....|++ .|++|+..+|| +.
T Consensus 89 ~edcl~l--nv~~P~~~~----~~~Pv~v~iHGGg~~~g~~~~~~------------~~~~~la~~~~~vvv~~nYRlg~ 150 (529)
T 1p0i_A 89 SEDCLYL--NVWIPAPKP----KNATVLIWIYGGGFQTGTSSLHV------------YDGKFLARVERVIVVSMNYRVGA 150 (529)
T ss_dssp CSCCCEE--EEEEESSCC----SSEEEEEEECCSTTTSCCTTCGG------------GCTHHHHHHHCCEEEEECCCCHH
T ss_pred CCcCCeE--EEeeCCCCC----CCCeEEEEECCCccccCCCCccc------------cChHHHhccCCeEEEEecccccc
Confidence 4566555 478887532 24899999999986542221110 11345665 79999998887 33
Q ss_pred CCCCCC-CCchhhHHHHHHHHHHHHHHHHHc--CC-CCCCcEEEEEechHHHHHHHHHHhC--CCceeEEEeccCCCC
Q 005240 567 IGEGDK-LPNDRFVEQLVSSAEAAVEEVVRR--GV-ADPSRIAVGGHSYGAFMTAHLLAHA--PHLFCCGIARSGSYN 638 (706)
Q Consensus 567 ~g~g~~-~~~~~~~~~~~~D~~~~~~~l~~~--~~-id~~~i~i~G~S~GG~~a~~~~~~~--p~~~~a~v~~~~~~d 638 (706)
.|+... ......++..+.|+..|++|++++ .+ .||+||.|+|+|+||+++++++... ..+|+++|+.+|...
T Consensus 151 ~Gf~~~~~~~~~~~n~gl~D~~~al~wv~~~i~~fggdp~~vti~G~SaGg~~~~~~~~~~~~~~lf~~~i~~Sg~~~ 228 (529)
T 1p0i_A 151 LGFLALPGNPEAPGNMGLFDQQLALQWVQKNIAAFGGNPKSVTLFGESAGAASVSLHLLSPGSHSLFTRAILQSGSFN 228 (529)
T ss_dssp HHHCCCTTCTTSCSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGGGGCSEEEEESCCTT
T ss_pred cccccCCCCCCCcCcccHHHHHHHHHHHHHHHHHhCCChhheEEeeccccHHHHHHHHhCccchHHHHHHHHhcCccc
Confidence 344322 111112344588999999999885 22 7999999999999999999998764 458999999999764
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.03 E-value=3.1e-08 Score=104.21 Aligned_cols=93 Identities=14% Similarity=-0.111 Sum_probs=56.2
Q ss_pred cceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceee-cccC-CC
Q 005240 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKP-LFES-PD 82 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~-lt~~-~~ 82 (706)
..|++.|+.+ ++. +..++.+... .+.+||||++|+.+.........+.....|.++|+.+++... |.-. ..
T Consensus 99 ~~VsVID~~t----~~v--v~~I~vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~ 171 (426)
T 3c75_H 99 TQQFVIDGST----GRI--LGMTDGGFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAP 171 (426)
T ss_dssp EEEEEEETTT----TEE--EEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCC
T ss_pred CeEEEEECCC----CEE--EEEEECCCCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCcc
Confidence 5788888865 433 3444566555 899999999996654210000001134679999999887643 3211 11
Q ss_pred cc-ccccccceEEecCCcEEEEE
Q 005240 83 IC-LNAVFGSFVWVNNSTLLIFT 104 (706)
Q Consensus 83 ~~-~~~~~~~~~wSpDg~~l~~~ 104 (706)
+. .......+.+||||++||+.
T Consensus 172 r~~~g~~P~~~~~spDGk~lyV~ 194 (426)
T 3c75_H 172 RFLVGTYQWMNALTPDNKNLLFY 194 (426)
T ss_dssp CCCBSCCGGGSEECTTSSEEEEE
T ss_pred ccccCCCcceEEEcCCCCEEEEE
Confidence 00 00125688999999998876
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.03 E-value=3.1e-08 Score=103.02 Aligned_cols=217 Identities=7% Similarity=-0.033 Sum_probs=127.5
Q ss_pred CcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCC
Q 005240 31 AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (706)
Q Consensus 31 ~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~ 110 (706)
..+..++|||||+.||.... . .+.++++++++........ .+....|+++++.+++...
T Consensus 20 ~~V~~v~fs~dg~~la~g~~---------~--~~~iw~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~---- 78 (355)
T 3vu4_A 20 NPVTDYEFNQDQSCLILSTL---------K--SFEIYNVHPVAHIMSQEMR------HLSKVRMLHRTNYVAFVTG---- 78 (355)
T ss_dssp CCCCEEEECTTSSEEEEECS---------S--EEEEEEETTEEEEEEEECS------CCCEEEECTTSSEEEEECS----
T ss_pred CceEEEEECCCCCEEEEEcC---------C--EEEEEecCCcceeeeeecC------CeEEEEEcCCCCEEEEEEC----
Confidence 35889999999999987542 2 2445666665543322211 1567789999998876532
Q ss_pred CCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CC-CceecCCCceEeeeeeCCCCcE
Q 005240 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTPAVYTAVEPSPDQKY 188 (706)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g-~~~~lt~~~~~~~~~~SpDG~~ 188 (706)
....|.++|+ +| ....+.....+..+.+++++
T Consensus 79 --------------------------------------------~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~-- 112 (355)
T 3vu4_A 79 --------------------------------------------VKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSREF-- 112 (355)
T ss_dssp --------------------------------------------STTEEEEEETTTTEEEEEEECSSCEEEEEECSSE--
T ss_pred --------------------------------------------CccEEEEEECCCCcEEEEEECCCceEEEEEcCCE--
Confidence 1146777887 56 33344433677888999875
Q ss_pred EEEEeeccCcccccccccccceEEEEecCCC--eeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCC
Q 005240 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGK--LVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRG 266 (706)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~ 266 (706)
++... . ..+++|++.+. ....+.. + . ....+++ .. +++....
T Consensus 113 ~~~~~-~-------------~~i~i~d~~~~~~~~~~~~~-------~-------~--~~~~~s~--~~-la~~sg~--- 156 (355)
T 3vu4_A 113 IVVSY-G-------------DVISVFKFGNPWKRITDDIR-------F-------G--GVCEFSN--GL-LVYSNEF--- 156 (355)
T ss_dssp EEEEE-T-------------TEEEEEESSTTCCBSSCCEE-------E-------E--EEEEEET--TE-EEEEESS---
T ss_pred EEEEE-c-------------CEEEEEECCCCceeeEEecc-------C-------C--ceEEEEc--cE-EEEeCCC---
Confidence 33332 1 37999999865 2222211 1 1 1234555 22 4433111
Q ss_pred CCccccCccceeeeecCCCCCCCC-----------------ceEEeecccccccceecCCCceEEEEeeccccceEEEEE
Q 005240 267 DANVEVSPRDIIYTQPAEPAEGEK-----------------PEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLV 329 (706)
Q Consensus 267 ~~~~~~~~~~~l~~~d~~~~~~~~-----------------~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~ 329 (706)
..+.|.+||+ .++. ...+..+...+..+.|+|||+.|+..+.+ +. .|.++
T Consensus 157 -------~~g~v~iwd~---~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d--~~-~v~iw 223 (355)
T 3vu4_A 157 -------NLGQIHITKL---QSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQD--GT-IIRVF 223 (355)
T ss_dssp -------CTTCEEEEEC---CC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETT--CS-EEEEE
T ss_pred -------cCcEEEEEEC---CCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCC--CC-EEEEE
Confidence 1124778887 4433 45566678889999999999988876522 22 15566
Q ss_pred cCCCCCCCceeeec-C-cccccccCCCCCceEeccCCCEEEEee
Q 005240 330 CPGSKDVAPRVLFD-R-VFENVYSDPGSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 330 d~~~~~~~~~~l~~-~-~~~~~~~~~~~~~~~~s~dg~~l~~~~ 371 (706)
|+.++ +....+. . ... ....+.|+|||++|+...
T Consensus 224 d~~~~--~~~~~~~~g~h~~------~v~~~~~s~~~~~l~s~s 259 (355)
T 3vu4_A 224 KTEDG--VLVREFRRGLDRA------DVVDMKWSTDGSKLAVVS 259 (355)
T ss_dssp ETTTC--CEEEEEECTTCCS------CEEEEEECTTSCEEEEEE
T ss_pred ECCCC--cEEEEEEcCCCCC------cEEEEEECCCCCEEEEEE
Confidence 77664 2222222 1 111 123478999999988765
|
| >3kxp_A Alpha-(N-acetylaminomethylene)succinic acid hydrolase; alpha/beta hydrolase, PLP degradation, E-2- (acetamidomethylene)succinate; 2.26A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.03 E-value=2.3e-09 Score=109.44 Aligned_cols=112 Identities=15% Similarity=0.108 Sum_probs=76.7
Q ss_pred CCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCC
Q 005240 491 DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEG 570 (706)
Q Consensus 491 dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g 570 (706)
+|..+......| .|+||++||.+.. ...+ ...+..|++ ||.|+..+.+ |+|
T Consensus 56 ~~~~~~~~~~g~----------~p~vv~lhG~~~~-----------~~~~----~~~~~~L~~-~~~v~~~D~~---G~G 106 (314)
T 3kxp_A 56 GRITLNVREKGS----------GPLMLFFHGITSN-----------SAVF----EPLMIRLSD-RFTTIAVDQR---GHG 106 (314)
T ss_dssp SSCEEEEEEECC----------SSEEEEECCTTCC-----------GGGG----HHHHHTTTT-TSEEEEECCT---TST
T ss_pred CCEEEEEEecCC----------CCEEEEECCCCCC-----------HHHH----HHHHHHHHc-CCeEEEEeCC---CcC
Confidence 677777665522 3689999996421 1111 123444444 7999997765 444
Q ss_pred CCCC--chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCC
Q 005240 571 DKLP--NDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSY 637 (706)
Q Consensus 571 ~~~~--~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~ 637 (706)
.+.. .....+...+|+..+++++ +..+++++|+|+||++++.++.++|++++++|+.+|..
T Consensus 107 ~S~~~~~~~~~~~~~~dl~~~l~~l------~~~~v~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 169 (314)
T 3kxp_A 107 LSDKPETGYEANDYADDIAGLIRTL------ARGHAILVGHSLGARNSVTAAAKYPDLVRSVVAIDFTP 169 (314)
T ss_dssp TSCCCSSCCSHHHHHHHHHHHHHHH------TSSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHh------CCCCcEEEEECchHHHHHHHHHhChhheeEEEEeCCCC
Confidence 4432 2223456677777777665 23689999999999999999999999999999998753
|
| >3ibt_A 1H-3-hydroxy-4-oxoquinoline 2,4-dioxygenase; QDO, oxidoreductase; 2.60A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.03 E-value=2.9e-09 Score=105.31 Aligned_cols=114 Identities=17% Similarity=0.106 Sum_probs=78.3
Q ss_pred CCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCC
Q 005240 491 DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEG 570 (706)
Q Consensus 491 dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g 570 (706)
+|..+.....-+++ -|+||++||.+.. ...+. ..+..| +.+|.|+..+.+ |+|
T Consensus 7 ~g~~l~~~~~g~~~--------~~~vv~lHG~~~~-----------~~~~~----~~~~~L-~~~~~v~~~D~~---G~G 59 (264)
T 3ibt_A 7 NGTLMTYSESGDPH--------APTLFLLSGWCQD-----------HRLFK----NLAPLL-ARDFHVICPDWR---GHD 59 (264)
T ss_dssp TTEECCEEEESCSS--------SCEEEEECCTTCC-----------GGGGT----THHHHH-TTTSEEEEECCT---TCS
T ss_pred CCeEEEEEEeCCCC--------CCeEEEEcCCCCc-----------HhHHH----HHHHHH-HhcCcEEEEccc---cCC
Confidence 67777766554421 3689999997421 11121 234455 456999986665 455
Q ss_pred CCCC--chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhC-CCceeEEEeccCCC
Q 005240 571 DKLP--NDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHA-PHLFCCGIARSGSY 637 (706)
Q Consensus 571 ~~~~--~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~-p~~~~a~v~~~~~~ 637 (706)
.+.. .........+|+.++++.+ +.+++.++|||+||.+++.++.++ |++++++|..++..
T Consensus 60 ~S~~~~~~~~~~~~~~~~~~~l~~l------~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~~ 123 (264)
T 3ibt_A 60 AKQTDSGDFDSQTLAQDLLAFIDAK------GIRDFQMVSTSHGCWVNIDVCEQLGAARLPKTIIIDWLL 123 (264)
T ss_dssp TTCCCCSCCCHHHHHHHHHHHHHHT------TCCSEEEEEETTHHHHHHHHHHHSCTTTSCEEEEESCCS
T ss_pred CCCCCccccCHHHHHHHHHHHHHhc------CCCceEEEecchhHHHHHHHHHhhChhhhheEEEecCCC
Confidence 5543 2234556677777766654 346899999999999999999999 99999999998754
|
| >3sty_A Methylketone synthase 1; alpha/beta hydrolase, decarboxylase, hydrolase; HET: DKA; 1.70A {Lycopersicon hirsutum F} PDB: 3stu_A* 3stt_A* 3stv_A* 3stw_A* 3stx_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=2.6e-09 Score=105.88 Aligned_cols=101 Identities=11% Similarity=0.038 Sum_probs=73.0
Q ss_pred ceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCCCCch---hhHHHHHHHHHHH
Q 005240 513 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPND---RFVEQLVSSAEAA 589 (706)
Q Consensus 513 ~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~---~~~~~~~~D~~~~ 589 (706)
.|+||++||.+.. ...+ ......|+++||.|+..+.+ |+|.+.... ......++|+.+.
T Consensus 12 ~~~vvllHG~~~~-----------~~~~----~~~~~~l~~~g~~v~~~D~~---G~G~S~~~~~~~~~~~~~~~~~~~~ 73 (267)
T 3sty_A 12 KKHFVLVHAAFHG-----------AWCW----YKIVALMRSSGHNVTALDLG---ASGINPKQALQIPNFSDYLSPLMEF 73 (267)
T ss_dssp CCEEEEECCTTCC-----------GGGG----HHHHHHHHHTTCEEEEECCT---TSTTCSCCGGGCCSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCC-----------cchH----HHHHHHHHhcCCeEEEeccc---cCCCCCCcCCccCCHHHHHHHHHHH
Confidence 4789999997421 1111 24566788899999996665 566664432 2355566666665
Q ss_pred HHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCC
Q 005240 590 VEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 636 (706)
Q Consensus 590 ~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~ 636 (706)
++.+ + +..++.++|||+||.+++.++.++|++++++|..++.
T Consensus 74 l~~l---~--~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~ 115 (267)
T 3sty_A 74 MASL---P--ANEKIILVGHALGGLAISKAMETFPEKISVAVFLSGL 115 (267)
T ss_dssp HHTS---C--TTSCEEEEEETTHHHHHHHHHHHSGGGEEEEEEESCC
T ss_pred HHhc---C--CCCCEEEEEEcHHHHHHHHHHHhChhhcceEEEecCC
Confidence 5544 1 3578999999999999999999999999999988874
|
| >3guu_A Lipase A; protein structure, hydrolase; HET: 1PE; 2.10A {Candida antarctica} PDB: 2veo_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=2.9e-09 Score=112.45 Aligned_cols=145 Identities=15% Similarity=0.124 Sum_probs=87.1
Q ss_pred CceEEEEEEccC--Ce--EEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcC----------CCCc
Q 005240 480 LQKEMIKYQRKD--GV--PLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFS----------GMTP 545 (706)
Q Consensus 480 ~~~~~~~~~~~d--g~--~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~----------~~~~ 545 (706)
.+...+.|.+.| |. ...+.++.|.+-. ++.|+|.|-||..-. ...+.++..... ....
T Consensus 73 ~~a~ri~Y~std~~G~p~~~~gtv~~P~~~~----~~~pvvs~~hgt~g~----~~~CaPS~~~~~~~~~~~~~~~~~e~ 144 (462)
T 3guu_A 73 AASFQLQYRTTNTQNEAVADVATVWIPAKPA----SPPKIFSYQVYEDAT----ALDCAPSYSYLTGLDQPNKVTAVLDT 144 (462)
T ss_dssp CEEEEEEEEEECTTSCEEEEEEEEEECSSCC----SSCEEEEEECCCCCC----SGGGCHHHHHBSCSCCTTGGGGSTHH
T ss_pred ceEEEEEEEEECCCCCEEEEEEEEEecCCCC----CCCcEEEEeCCcccC----CCCcCCccccccCCCccccchhhhhH
Confidence 366677777764 53 4888999998732 247999999996321 111111100000 0011
Q ss_pred hHHHHH-HHCCeEEEEcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhC-
Q 005240 546 TSSLIF-LARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHA- 623 (706)
Q Consensus 546 ~~~~~l-~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~- 623 (706)
.....| +++||+|+.+++. |.|..+.........+.|...++..+. +.-...+++++|+|+||..+++++...
T Consensus 145 ~~~~~~~l~~G~~Vv~~Dy~---G~G~~y~~~~~~~~~vlD~vrAa~~~~--~~~~~~~v~l~G~S~GG~aal~aa~~~~ 219 (462)
T 3guu_A 145 PIIIGWALQQGYYVVSSDHE---GFKAAFIAGYEEGMAILDGIRALKNYQ--NLPSDSKVALEGYSGGAHATVWATSLAE 219 (462)
T ss_dssp HHHHHHHHHTTCEEEEECTT---TTTTCTTCHHHHHHHHHHHHHHHHHHT--TCCTTCEEEEEEETHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCEEEEecCC---CCCCcccCCcchhHHHHHHHHHHHHhc--cCCCCCCEEEEeeCccHHHHHHHHHhCh
Confidence 234566 8999999997776 445554443222222334444433332 221247999999999999999988654
Q ss_pred ---CC-ceeEEEeccCCC
Q 005240 624 ---PH-LFCCGIARSGSY 637 (706)
Q Consensus 624 ---p~-~~~a~v~~~~~~ 637 (706)
|+ .++++++.++..
T Consensus 220 ~yapel~~~g~~~~~~p~ 237 (462)
T 3guu_A 220 SYAPELNIVGASHGGTPV 237 (462)
T ss_dssp HHCTTSEEEEEEEESCCC
T ss_pred hhcCccceEEEEEecCCC
Confidence 34 588888887653
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.02 E-value=7.9e-08 Score=97.61 Aligned_cols=184 Identities=10% Similarity=0.049 Sum_probs=111.7
Q ss_pred CCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhh
Q 005240 70 ETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDES 149 (706)
Q Consensus 70 ~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 149 (706)
.+.+.++|+..... ...+.|+|||+.|++...
T Consensus 33 ~~~~~~~l~~~~~~-----~egp~~~~~g~~l~~~d~------------------------------------------- 64 (305)
T 3dr2_A 33 GDARLLTLYDQATW-----SEGPAWWEAQRTLVWSDL------------------------------------------- 64 (305)
T ss_dssp TTCCCEEEECCCSS-----EEEEEEEGGGTEEEEEET-------------------------------------------
T ss_pred CCCceEEEecCCcC-----ccCCeEeCCCCEEEEEEC-------------------------------------------
Confidence 45566677644332 468899999998887632
Q ss_pred hhhhcccceEEEEccCCCceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCC
Q 005240 150 LFDYYTTAQLVLGSLDGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLP 228 (706)
Q Consensus 150 ~~~~~~~~~l~~~~l~g~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 228 (706)
....|++++.+|+.+.+... .....++++|||+.++ .... ...|.+++.++ +.+.+....
T Consensus 65 -----~~~~i~~~~~~g~~~~~~~~~~~~~gl~~d~dG~l~v-~~~~------------~~~v~~~~~~g-~~~~~~~~~ 125 (305)
T 3dr2_A 65 -----VGRRVLGWREDGTVDVLLDATAFTNGNAVDAQQRLVH-CEHG------------RRAITRSDADG-QAHLLVGRY 125 (305)
T ss_dssp -----TTTEEEEEETTSCEEEEEESCSCEEEEEECTTSCEEE-EETT------------TTEEEEECTTS-CEEEEECEE
T ss_pred -----CCCEEEEEeCCCCEEEEeCCCCccceeeECCCCCEEE-EECC------------CCEEEEECCCC-CEEEEEecc
Confidence 12578888887765555444 5677899999998443 3322 13788999874 455554321
Q ss_pred CCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCC------CCccccCccceeeeecCCCCCCCCceEEeecccccc
Q 005240 229 PAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRG------DANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFR 302 (706)
Q Consensus 229 ~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~------~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~ 302 (706)
.. .+. ..+..+.++|||+ |++....-+. ...........||++|. ++++.+.+. ......
T Consensus 126 ~~--~~~------~~~~~i~~d~dG~--l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~---~~g~~~~~~-~~~~p~ 191 (305)
T 3dr2_A 126 AG--KRL------NSPNDLIVARDGA--IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPP---DGSPLQRMA-DLDHPN 191 (305)
T ss_dssp TT--EEC------SCCCCEEECTTSC--EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECS---SSCCCEEEE-EESSEE
T ss_pred CC--Ccc------CCCCCEEECCCCC--EEEeCcCCCccccccccccccccCCCeEEEEcC---CCCcEEEEe-cCCCCc
Confidence 10 000 1234789999997 6654210000 00000112346899987 677877776 444556
Q ss_pred cceecCCCceEEEEeecc--ccceEEEEEcCCCC
Q 005240 303 SVSWCDDSLALVNETWYK--TSQTRTWLVCPGSK 334 (706)
Q Consensus 303 ~~~wspDg~~l~~~~~~~--~~~~~l~~~d~~~~ 334 (706)
.++|+|||+.|++..... .....|++++++++
T Consensus 192 gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~ 225 (305)
T 3dr2_A 192 GLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDG 225 (305)
T ss_dssp EEEECTTSSEEEEEECCC---CCCEEEEEEEETT
T ss_pred ceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCC
Confidence 789999999888764321 01357999888763
|
| >1ea5_A ACHE, acetylcholinesterase; hydrolase, serine hydrolase, neurotransmitter cleavage, catalytic triad, alpha/beta hydrolase; HET: NAG; 1.80A {Torpedo californica} SCOP: c.69.1.1 PDB: 1ax9_A* 1amn_A* 1cfj_A* 1fss_A* 1gpk_A* 1gpn_A* 1oce_A* 1qid_A 1qie_A 1qif_A 1qig_A 1qih_A 1qii_A 1qij_A 1qik_A 1qim_A 1qti_A* 1vot_A* 1vxo_A* 1vxr_A* ... | Back alignment and structure |
|---|
Probab=99.01 E-value=4.7e-10 Score=122.64 Aligned_cols=132 Identities=17% Similarity=0.172 Sum_probs=91.4
Q ss_pred ccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHH-HCCeEEEEcCCC-Cc
Q 005240 489 RKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFL-ARRFAVLAGPSI-PI 566 (706)
Q Consensus 489 ~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~G~~v~~~~~~-~~ 566 (706)
+.|...+ -+|.|... . .++|+||++|||++..|+..... .....|+ +.|++|+..+|| +.
T Consensus 91 sedcl~l--nv~~P~~~-~---~~~Pv~v~iHGG~~~~g~~~~~~------------~~~~~la~~~~~vvv~~nYRlg~ 152 (537)
T 1ea5_A 91 SEDCLYL--NIWVPSPR-P---KSTTVMVWIYGGGFYSGSSTLDV------------YNGKYLAYTEEVVLVSLSYRVGA 152 (537)
T ss_dssp CSCCCEE--EEEECSSC-C---SSEEEEEEECCSTTTCCCTTCGG------------GCTHHHHHHHTCEEEECCCCCHH
T ss_pred CCcCCeE--EEeccCCC-C---CCCeEEEEECCCcccCCCCCCCc------------cChHHHHhcCCEEEEEeccCccc
Confidence 4577555 46788753 1 24899999999987543221110 1234566 689999998888 33
Q ss_pred CCCCCC-CCchhhHHHHHHHHHHHHHHHHHc--CC-CCCCcEEEEEechHHHHHHHHHHh--CCCceeEEEeccCCCC
Q 005240 567 IGEGDK-LPNDRFVEQLVSSAEAAVEEVVRR--GV-ADPSRIAVGGHSYGAFMTAHLLAH--APHLFCCGIARSGSYN 638 (706)
Q Consensus 567 ~g~g~~-~~~~~~~~~~~~D~~~~~~~l~~~--~~-id~~~i~i~G~S~GG~~a~~~~~~--~p~~~~a~v~~~~~~d 638 (706)
.|+... ......++..+.|+..|++|++++ .+ .||+||.|+|+|+||++++.++.. ...+|+++|+.+|...
T Consensus 153 ~Gf~~~~~~~~~~~n~gl~D~~~al~wv~~ni~~fggdp~~vtl~G~SaGg~~~~~~~~~~~~~~lf~~~i~~Sg~~~ 230 (537)
T 1ea5_A 153 FGFLALHGSQEAPGNVGLLDQRMALQWVHDNIQFFGGDPKTVTIFGESAGGASVGMHILSPGSRDLFRRAILQSGSPN 230 (537)
T ss_dssp HHHCCCTTCSSSCSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCHHHHTTCSEEEEESCCTT
T ss_pred cccccCCCCCCCcCccccHHHHHHHHHHHHHHHHhCCCccceEEEecccHHHHHHHHHhCccchhhhhhheeccCCcc
Confidence 344322 111112334589999999999986 22 799999999999999999988875 2368999999999754
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.01 E-value=5.9e-08 Score=98.14 Aligned_cols=233 Identities=9% Similarity=0.049 Sum_probs=133.7
Q ss_pred ccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCC
Q 005240 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDP 112 (706)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~ 112 (706)
...|.|+|+++.|+++. .....|+++++++++.+.+.. +. .+..+.++|||++ ++...
T Consensus 15 ~Egp~w~~~~~~l~~~d---------~~~~~i~~~d~~~~~~~~~~~-~~-----~~~~i~~~~dG~l-~v~~~------ 72 (297)
T 3g4e_A 15 GESPVWEEVSNSLLFVD---------IPAKKVCRWDSFTKQVQRVTM-DA-----PVSSVALRQSGGY-VATIG------ 72 (297)
T ss_dssp EEEEEEETTTTEEEEEE---------TTTTEEEEEETTTCCEEEEEC-SS-----CEEEEEEBTTSSE-EEEET------
T ss_pred ccCCeEECCCCEEEEEE---------CCCCEEEEEECCCCcEEEEeC-CC-----ceEEEEECCCCCE-EEEEC------
Confidence 44799999999998864 334789999999887655432 22 2678899999994 43321
Q ss_pred CCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCCceecCCC------ceEeeeeeCCC
Q 005240 113 PKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP------AVYTAVEPSPD 185 (706)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~~~lt~~------~~~~~~~~SpD 185 (706)
..|+++++ +|+.+.+... .....++++||
T Consensus 73 --------------------------------------------~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~d 108 (297)
T 3g4e_A 73 --------------------------------------------TKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPA 108 (297)
T ss_dssp --------------------------------------------TEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTT
T ss_pred --------------------------------------------CeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCC
Confidence 46788887 4554444221 34667899999
Q ss_pred CcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccC
Q 005240 186 QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDR 265 (706)
Q Consensus 186 G~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~ 265 (706)
|+ |++.......... ........|+.++.++.. ..+.... ..+..++|+||++. ||++...
T Consensus 109 G~-l~~~~~~~~~~~~-~~~~~~~~l~~~d~~g~~-~~~~~~~-------------~~pngi~~spdg~~-lyv~~~~-- 169 (297)
T 3g4e_A 109 GR-YFAGTMAEETAPA-VLERHQGALYSLFPDHHV-KKYFDQV-------------DISNGLDWSLDHKI-FYYIDSL-- 169 (297)
T ss_dssp SC-EEEEEEECCSBTT-BCCTTCEEEEEECTTSCE-EEEEEEE-------------SBEEEEEECTTSCE-EEEEEGG--
T ss_pred CC-EEEecCCcccccc-cccCCCcEEEEEECCCCE-EEEeecc-------------ccccceEEcCCCCE-EEEecCC--
Confidence 98 6665543211000 000012467777776543 3332211 11236799999997 7766321
Q ss_pred CCCccccCccceeeeecCCCCCCCCce---EEee---cccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCce
Q 005240 266 GDANVEVSPRDIIYTQPAEPAEGEKPE---ILHK---LDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPR 339 (706)
Q Consensus 266 ~~~~~~~~~~~~l~~~d~~~~~~~~~~---~l~~---~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~ 339 (706)
...|++++.++ +++.+. .+.. .......+++.+||. |+++.. ....|+++|++++ +..
T Consensus 170 ---------~~~i~~~~~d~-~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~-lwva~~---~~~~v~~~d~~tG--~~~ 233 (297)
T 3g4e_A 170 ---------SYSVDAFDYDL-QTGQISNRRSVYKLEKEEQIPDGMCIDAEGK-LWVACY---NGGRVIRLDPVTG--KRL 233 (297)
T ss_dssp ---------GTEEEEEEECT-TTCCEEEEEEEEECCGGGCEEEEEEEBTTSC-EEEEEE---TTTEEEEECTTTC--CEE
T ss_pred ---------CCcEEEEeccC-CCCcccCcEEEEECCCCCCCCCeeEECCCCC-EEEEEc---CCCEEEEEcCCCc--eEE
Confidence 12467776521 344432 2222 124456778899996 443322 2246999999864 233
Q ss_pred eeecCcccccccCCCCCceEec-cCCCEEEEeee
Q 005240 340 VLFDRVFENVYSDPGSPMMTRT-STGTNVIAKIK 372 (706)
Q Consensus 340 ~l~~~~~~~~~~~~~~~~~~~s-~dg~~l~~~~~ 372 (706)
......... ...+.|+ ||++.|+++..
T Consensus 234 ~~i~~p~~~------~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 234 QTVKLPVDK------TTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EEEECSSSB------EEEEEEESGGGCEEEEEEB
T ss_pred EEEECCCCC------ceEEEEeCCCCCEEEEEcC
Confidence 222221111 1235666 88888877753
|
| >3kda_A CFTR inhibitory factor (CIF); alpha/beta hydrolase, hydrolase; 1.50A {Pseudomonas aeruginosa ucbpp-pa14} PDB: 3kd2_A 3pi6_A | Back alignment and structure |
|---|
Probab=99.00 E-value=1e-08 Score=103.60 Aligned_cols=112 Identities=18% Similarity=0.120 Sum_probs=79.8
Q ss_pred cCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCC
Q 005240 490 KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGE 569 (706)
Q Consensus 490 ~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~ 569 (706)
.+|..+....+- . -|.||++||.+.. ...+. ..+..|++. |.|+..+.+ |+
T Consensus 17 ~~g~~l~~~~~g-------~---~~~vv~lHG~~~~-----------~~~~~----~~~~~L~~~-~~vi~~D~~---G~ 67 (301)
T 3kda_A 17 VDGVKLHYVKGG-------Q---GPLVMLVHGFGQT-----------WYEWH----QLMPELAKR-FTVIAPDLP---GL 67 (301)
T ss_dssp ETTEEEEEEEEE-------S---SSEEEEECCTTCC-----------GGGGT----TTHHHHTTT-SEEEEECCT---TS
T ss_pred eCCeEEEEEEcC-------C---CCEEEEECCCCcc-----------hhHHH----HHHHHHHhc-CeEEEEcCC---CC
Confidence 378888866653 1 2679999997521 11221 345667777 999986665 45
Q ss_pred CCCCCc--hhhHHHHHHHHHHHHHHHHHcCCCCCCc-EEEEEechHHHHHHHHHHhCCCceeEEEeccCC
Q 005240 570 GDKLPN--DRFVEQLVSSAEAAVEEVVRRGVADPSR-IAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 636 (706)
Q Consensus 570 g~~~~~--~~~~~~~~~D~~~~~~~l~~~~~id~~~-i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~ 636 (706)
|.+... ........+|+.++++.+ +.++ +.++||||||.+++.++.++|++++++|..++.
T Consensus 68 G~S~~~~~~~~~~~~~~~l~~~l~~l------~~~~p~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~ 131 (301)
T 3kda_A 68 GQSEPPKTGYSGEQVAVYLHKLARQF------SPDRPFDLVAHDIGIWNTYPMVVKNQADIARLVYMEAP 131 (301)
T ss_dssp TTCCCCSSCSSHHHHHHHHHHHHHHH------CSSSCEEEEEETHHHHTTHHHHHHCGGGEEEEEEESSC
T ss_pred CCCCCCCCCccHHHHHHHHHHHHHHc------CCCccEEEEEeCccHHHHHHHHHhChhhccEEEEEccC
Confidence 555332 234566677777777765 2356 999999999999999999999999999999985
|
| >2rau_A Putative esterase; NP_343859.1, putative lipase, structural genomics, joint CEN structural genomics, JCSG; HET: PG4 UNL; 1.85A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.8e-09 Score=112.34 Aligned_cols=85 Identities=15% Similarity=0.057 Sum_probs=66.5
Q ss_pred hHHHHHHHCCeEEEEcCCCCcCCCCCCCCc---------hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHH
Q 005240 546 TSSLIFLARRFAVLAGPSIPIIGEGDKLPN---------DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMT 616 (706)
Q Consensus 546 ~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~---------~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a 616 (706)
..+..|++.||.|+..+.+| +|.+... .......++|+.++++++.++ .+.+++.++|||+||+++
T Consensus 84 ~~~~~l~~~g~~v~~~d~~G---~G~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~--~~~~~~~l~G~S~Gg~~a 158 (354)
T 2rau_A 84 SIVLYLARNGFNVYTIDYRT---HYVPPFLKDRQLSFTANWGWSTWISDIKEVVSFIKRD--SGQERIYLAGESFGGIAA 158 (354)
T ss_dssp CHHHHHHHTTEEEEEEECGG---GGCCTTCCGGGGGGGTTCSHHHHHHHHHHHHHHHHHH--HCCSSEEEEEETHHHHHH
T ss_pred hHHHHHHhCCCEEEEecCCC---CCCCCcccccccccccCCcHHHHHHHHHHHHHHHHHh--cCCceEEEEEECHhHHHH
Confidence 35677888999999977653 4444321 112366788999999999876 345789999999999999
Q ss_pred HHHHHhC-CCceeEEEeccC
Q 005240 617 AHLLAHA-PHLFCCGIARSG 635 (706)
Q Consensus 617 ~~~~~~~-p~~~~a~v~~~~ 635 (706)
+.++.++ |++++++|+.++
T Consensus 159 ~~~a~~~~p~~v~~lvl~~~ 178 (354)
T 2rau_A 159 LNYSSLYWKNDIKGLILLDG 178 (354)
T ss_dssp HHHHHHHHHHHEEEEEEESC
T ss_pred HHHHHhcCccccceEEEecc
Confidence 9999998 999999999854
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.99 E-value=9.2e-08 Score=96.88 Aligned_cols=235 Identities=9% Similarity=0.037 Sum_probs=136.2
Q ss_pred ceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCc----eeecccCC
Q 005240 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE----AKPLFESP 81 (706)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~----~~~lt~~~ 81 (706)
.|.|+++.. ++...... .....+..+.|||||+.|+.... + ..+.++++.... ...+....
T Consensus 40 ~v~vw~~~~----~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~--------d--g~i~~~~~~~~~~~~~~~~~~~~~ 104 (313)
T 3odt_A 40 TVRLWSKDD----QWLGTVVY-TGQGFLNSVCYDSEKELLLFGGK--------D--TMINGVPLFATSGEDPLYTLIGHQ 104 (313)
T ss_dssp EEEEEEESS----SEEEEEEE-ECSSCEEEEEEETTTTEEEEEET--------T--SCEEEEETTCCTTSCC-CEECCCS
T ss_pred cEEEEECCC----CEEEEEee-cCCccEEEEEECCCCCEEEEecC--------C--CeEEEEEeeecCCCCcccchhhcc
Confidence 588888865 54333321 12335889999999999988653 3 455556654432 12222111
Q ss_pred CccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEE
Q 005240 82 DICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (706)
Q Consensus 82 ~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~ 161 (706)
. .+..+.| +++.|+..+.+ +.|.+
T Consensus 105 ~-----~i~~~~~--~~~~l~~~~~d-------------------------------------------------~~i~~ 128 (313)
T 3odt_A 105 G-----NVCSLSF--QDGVVISGSWD-------------------------------------------------KTAKV 128 (313)
T ss_dssp S-----CEEEEEE--ETTEEEEEETT-------------------------------------------------SEEEE
T ss_pred c-----CEEEEEe--cCCEEEEEeCC-------------------------------------------------CCEEE
Confidence 1 2556677 66777765421 45666
Q ss_pred EccCC-CceecCCC-ceEeeeeeCC-CCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccC
Q 005240 162 GSLDG-TAKDFGTP-AVYTAVEPSP-DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYN 238 (706)
Q Consensus 162 ~~l~g-~~~~lt~~-~~~~~~~~Sp-DG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~ 238 (706)
++ .+ ....+... ..+..+.|+| +++.|+..+.. ..+.+|+.. ...+.+.....
T Consensus 129 ~d-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-------------~~i~i~d~~-~~~~~~~~~~~--------- 184 (313)
T 3odt_A 129 WK-EGSLVYNLQAHNASVWDAKVVSFSENKFLTASAD-------------KTIKLWQND-KVIKTFSGIHN--------- 184 (313)
T ss_dssp EE-TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETT-------------SCEEEEETT-EEEEEECSSCS---------
T ss_pred Ec-CCcEEEecccCCCceeEEEEccCCCCEEEEEECC-------------CCEEEEecC-ceEEEEeccCc---------
Confidence 66 33 33333333 5677888888 88888766543 378899833 22333322110
Q ss_pred ccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCce-EEeecccccccceecCCCceEEEEe
Q 005240 239 SVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPE-ILHKLDLRFRSVSWCDDSLALVNET 317 (706)
Q Consensus 239 ~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~-~l~~~~~~~~~~~wspDg~~l~~~~ 317 (706)
..+..+.|+|++. ++... ....|.++|+ ..++.. .+......+..+.|+||++ |+..+
T Consensus 185 ---~~i~~~~~~~~~~--~~~~~------------~dg~i~i~d~---~~~~~~~~~~~~~~~i~~~~~~~~~~-l~~~~ 243 (313)
T 3odt_A 185 ---DVVRHLAVVDDGH--FISCS------------NDGLIKLVDM---HTGDVLRTYEGHESFVYCIKLLPNGD-IVSCG 243 (313)
T ss_dssp ---SCEEEEEEEETTE--EEEEE------------TTSEEEEEET---TTCCEEEEEECCSSCEEEEEECTTSC-EEEEE
T ss_pred ---ccEEEEEEcCCCe--EEEcc------------CCCeEEEEEC---CchhhhhhhhcCCceEEEEEEecCCC-EEEEe
Confidence 1244789999987 43221 1225888888 444443 4455677889999999994 55543
Q ss_pred eccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEE
Q 005240 318 WYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVI 368 (706)
Q Consensus 318 ~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~ 368 (706)
....|.++|+.++ +........... ...+.|+|+|+.++
T Consensus 244 ----~dg~v~iwd~~~~--~~~~~~~~~~~~------i~~~~~~~~~~~~~ 282 (313)
T 3odt_A 244 ----EDRTVRIWSKENG--SLKQVITLPAIS------IWSVDCMSNGDIIV 282 (313)
T ss_dssp ----TTSEEEEECTTTC--CEEEEEECSSSC------EEEEEECTTSCEEE
T ss_pred ----cCCEEEEEECCCC--ceeEEEeccCce------EEEEEEccCCCEEE
Confidence 2345888888874 333332222111 22477899998543
|
| >1ukc_A ESTA, esterase; fungi, A/B hydrolase fold, acetylcholinesterase, H; HET: NAG MAN; 2.10A {Aspergillus niger} SCOP: c.69.1.17 | Back alignment and structure |
|---|
Probab=98.99 E-value=5.9e-10 Score=121.42 Aligned_cols=133 Identities=17% Similarity=0.148 Sum_probs=91.2
Q ss_pred ccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHH--HHCCeEEEEcCCC-C
Q 005240 489 RKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIF--LARRFAVLAGPSI-P 565 (706)
Q Consensus 489 ~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~G~~v~~~~~~-~ 565 (706)
+.|. +...+|.|.....+ .++|+||++|||++..++. ..+. ...+. +..|++|+..+|| +
T Consensus 82 ~edc--l~l~v~~P~~~~~~--~~~Pviv~iHGGg~~~g~~--------~~~~-----~~~~~~~~~~g~vvv~~nYRlg 144 (522)
T 1ukc_A 82 SEDC--LFINVFKPSTATSQ--SKLPVWLFIQGGGYAENSN--------ANYN-----GTQVIQASDDVIVFVTFNYRVG 144 (522)
T ss_dssp ESCC--CEEEEEEETTCCTT--CCEEEEEEECCSTTTSCCS--------CSCC-----CHHHHHHTTSCCEEEEECCCCH
T ss_pred CCcC--CEEEEEECCCCCCC--CCCCEEEEECCCccccCCc--------cccC-----cHHHHHhcCCcEEEEEeccccc
Confidence 4566 45568889764332 2589999999998754221 1111 11222 2469999998888 4
Q ss_pred cCCCCCCCCch--hhHHHHHHHHHHHHHHHHHcC--C-CCCCcEEEEEechHHHHHHHHHHhC----CCceeEEEeccCC
Q 005240 566 IIGEGDKLPND--RFVEQLVSSAEAAVEEVVRRG--V-ADPSRIAVGGHSYGAFMTAHLLAHA----PHLFCCGIARSGS 636 (706)
Q Consensus 566 ~~g~g~~~~~~--~~~~~~~~D~~~~~~~l~~~~--~-id~~~i~i~G~S~GG~~a~~~~~~~----p~~~~a~v~~~~~ 636 (706)
..|++...... ...+..+.|+.+|++|++++. + .||+||.|+|+|+||++++.++... +.+|+++|+.+|.
T Consensus 145 ~~Gf~~~~~~~~~~~~n~gl~D~~~al~wv~~ni~~fggDp~~v~i~G~SaGg~~v~~~l~~~~~~~~~lf~~~i~~sg~ 224 (522)
T 1ukc_A 145 ALGFLASEKVRQNGDLNAGLLDQRKALRWVKQYIEQFGGDPDHIVIHGVSAGAGSVAYHLSAYGGKDEGLFIGAIVESSF 224 (522)
T ss_dssp HHHHCCCHHHHHSSCTTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHTGGGTCCCSSCSEEEEESCC
T ss_pred ccccccchhccccCCCChhHHHHHHHHHHHHHHHHHcCCCchhEEEEEEChHHHHHHHHHhCCCccccccchhhhhcCCC
Confidence 44554321110 123556899999999998852 2 7999999999999999988877653 5789999999987
Q ss_pred CC
Q 005240 637 YN 638 (706)
Q Consensus 637 ~d 638 (706)
+.
T Consensus 225 ~~ 226 (522)
T 1ukc_A 225 WP 226 (522)
T ss_dssp CC
T ss_pred cC
Confidence 54
|
| >2fj0_A JuvenIle hormone esterase; manduca sexta, alpha-beta hydrolase; HET: TFC; 2.70A {Trichoplusia NI} | Back alignment and structure |
|---|
Probab=98.98 E-value=3.2e-10 Score=124.41 Aligned_cols=134 Identities=17% Similarity=0.148 Sum_probs=89.9
Q ss_pred ccCCeEEEEEEEec-----CCCCCCCC--CCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEc
Q 005240 489 RKDGVPLTATLYLP-----PGYDQSKD--GPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAG 561 (706)
Q Consensus 489 ~~dg~~i~~~l~~P-----~~~~~~~~--~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~ 561 (706)
+.|. +..-+|.| .. ...++ .++|+||++|||++..++..... .....|++.|++|+..
T Consensus 87 ~edc--L~lnv~~P~~~~~~~-~~~~~~~~~~Pviv~iHGGg~~~g~~~~~~------------~~~~~l~~~g~vvv~~ 151 (551)
T 2fj0_A 87 SEAC--IHANIHVPYYALPRD-AADKNRFAGLPVLVFIHGGGFAFGSGDSDL------------HGPEYLVSKDVIVITF 151 (551)
T ss_dssp CSCC--CEEEEEEEGGGCCCC---------CEEEEEEECCSTTTSCCSCTTT------------CBCTTGGGGSCEEEEE
T ss_pred CCCC--eEEEEEecCcccccc-ccccCcCCCCCEEEEEcCCccccCCCcccc------------cCHHHHHhCCeEEEEe
Confidence 4465 44557788 32 11111 12899999999987543321110 1224567799999998
Q ss_pred CCCCc-CCCCCCCCchhhHHHHHHHHHHHHHHHHHcC--C-CCCCcEEEEEechHHHHHHHHHHh--CCCceeEEEeccC
Q 005240 562 PSIPI-IGEGDKLPNDRFVEQLVSSAEAAVEEVVRRG--V-ADPSRIAVGGHSYGAFMTAHLLAH--APHLFCCGIARSG 635 (706)
Q Consensus 562 ~~~~~-~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~--~-id~~~i~i~G~S~GG~~a~~~~~~--~p~~~~a~v~~~~ 635 (706)
++|.. .|+..........+..+.|+..|++|++++. + .|++||.|+|+|+||++++.++.. .+.+|+++|+.+|
T Consensus 152 nYRl~~~Gf~~~~~~~~~~n~gl~D~~~al~wv~~~i~~fggDp~~v~l~G~SaGg~~~~~~~~~~~~~~lf~~~i~~sg 231 (551)
T 2fj0_A 152 NYRLNVYGFLSLNSTSVPGNAGLRDMVTLLKWVQRNAHFFGGRPDDVTLMGQSAGAAATHILSLSKAADGLFRRAILMSG 231 (551)
T ss_dssp CCCCHHHHHCCCSSSSCCSCHHHHHHHHHHHHHHHHTGGGTEEEEEEEEEEETHHHHHHHHHTTCGGGTTSCSEEEEESC
T ss_pred CCcCCccccccCcccCCCCchhHHHHHHHHHHHHHHHHHhCCChhhEEEEEEChHHhhhhccccCchhhhhhhheeeecC
Confidence 88843 2443221111123455899999999998862 3 799999999999999999999876 3578999999998
Q ss_pred CC
Q 005240 636 SY 637 (706)
Q Consensus 636 ~~ 637 (706)
..
T Consensus 232 ~~ 233 (551)
T 2fj0_A 232 TS 233 (551)
T ss_dssp CT
T ss_pred Cc
Confidence 64
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=98.98 E-value=4.8e-08 Score=98.85 Aligned_cols=223 Identities=8% Similarity=-0.049 Sum_probs=124.3
Q ss_pred ceEEEEccCC-CceecCCCceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCc
Q 005240 157 AQLVLGSLDG-TAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPV 235 (706)
Q Consensus 157 ~~l~~~~l~g-~~~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~ 235 (706)
..|++++.++ +.+.+.....+..++++|||+ |++.. . ..|++++.++++.+.+...... .+.
T Consensus 35 ~~i~~~d~~~~~~~~~~~~~~~~~i~~~~dG~-l~v~~-~-------------~~l~~~d~~~g~~~~~~~~~~~--~~~ 97 (297)
T 3g4e_A 35 KKVCRWDSFTKQVQRVTMDAPVSSVALRQSGG-YVATI-G-------------TKFCALNWKEQSAVVLATVDND--KKN 97 (297)
T ss_dssp TEEEEEETTTCCEEEEECSSCEEEEEEBTTSS-EEEEE-T-------------TEEEEEETTTTEEEEEEECCTT--CSS
T ss_pred CEEEEEECCCCcEEEEeCCCceEEEEECCCCC-EEEEE-C-------------CeEEEEECCCCcEEEEEecCCC--CCC
Confidence 6899999854 555444446678899999999 44433 2 3789999998877776554211 010
Q ss_pred ccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEE
Q 005240 236 CYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVN 315 (706)
Q Consensus 236 ~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~ 315 (706)
.....+.++|||+ |++..................||+++. + ++...+.........+.|+|||+.|++
T Consensus 98 ------~~~~di~~d~dG~--l~~~~~~~~~~~~~~~~~~~~l~~~d~---~-g~~~~~~~~~~~pngi~~spdg~~lyv 165 (297)
T 3g4e_A 98 ------NRFNDGKVDPAGR--YFAGTMAEETAPAVLERHQGALYSLFP---D-HHVKKYFDQVDISNGLDWSLDHKIFYY 165 (297)
T ss_dssp ------EEEEEEEECTTSC--EEEEEEECCSBTTBCCTTCEEEEEECT---T-SCEEEEEEEESBEEEEEECTTSCEEEE
T ss_pred ------CCCCCEEECCCCC--EEEecCCcccccccccCCCcEEEEEEC---C-CCEEEEeeccccccceEEcCCCCEEEE
Confidence 1234678999997 665432221110001112346888876 3 455555444445567899999998887
Q ss_pred EeeccccceEEEEEcC--CCCCCC-ceeeecCcccccccCCCCC-ceEeccCCCEEEEeeeccCCcceEEEEecCCCCCC
Q 005240 316 ETWYKTSQTRTWLVCP--GSKDVA-PRVLFDRVFENVYSDPGSP-MMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPE 391 (706)
Q Consensus 316 ~~~~~~~~~~l~~~d~--~~~~~~-~~~l~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~ 391 (706)
... ...+|+++++ .++... .+.+.+... .++.+ .+..+++|. |++....
T Consensus 166 ~~~---~~~~i~~~~~d~~~G~~~~~~~~~~~~~-----~~~~p~g~~~d~~G~-lwva~~~------------------ 218 (297)
T 3g4e_A 166 IDS---LSYSVDAFDYDLQTGQISNRRSVYKLEK-----EEQIPDGMCIDAEGK-LWVACYN------------------ 218 (297)
T ss_dssp EEG---GGTEEEEEEECTTTCCEEEEEEEEECCG-----GGCEEEEEEEBTTSC-EEEEEET------------------
T ss_pred ecC---CCCcEEEEeccCCCCcccCcEEEEECCC-----CCCCCCeeEECCCCC-EEEEEcC------------------
Confidence 642 2345777765 342211 112211110 00111 244567764 3333210
Q ss_pred CCCCceeeeecCCCceeeeecccchhhhhhhhhhccCCCceecc-cCCCEEEEEEecC
Q 005240 392 GNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDIN-LNQLKILTSKESK 448 (706)
Q Consensus 392 ~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s-~Dg~~l~~~~~~~ 448 (706)
...|.++|+++|+....+..+.. .+ ....|+ ||+++|+.+....
T Consensus 219 --~~~v~~~d~~tG~~~~~i~~p~~----~~-------t~~~f~g~d~~~L~vt~~~~ 263 (297)
T 3g4e_A 219 --GGRVIRLDPVTGKRLQTVKLPVD----KT-------TSCCFGGKNYSEMYVTCARD 263 (297)
T ss_dssp --TTEEEEECTTTCCEEEEEECSSS----BE-------EEEEEESGGGCEEEEEEBCT
T ss_pred --CCEEEEEcCCCceEEEEEECCCC----Cc-------eEEEEeCCCCCEEEEEcCCc
Confidence 11377889888876555443311 11 246788 8888877776554
|
| >2e3j_A Epoxide hydrolase EPHB; epoxide hydrolase B, structural mycobacterium tuberculosis structural proteomics project, X hydrolase; 2.10A {Mycobacterium tuberculosis} PDB: 2zjf_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=1.2e-08 Score=106.23 Aligned_cols=118 Identities=16% Similarity=0.125 Sum_probs=83.5
Q ss_pred cCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCC
Q 005240 490 KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGE 569 (706)
Q Consensus 490 ~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~ 569 (706)
.+|..++....-|++ + ..|.||++||.+.. ...+ ...+..|++.||.|+..+.+ |+
T Consensus 10 ~~g~~l~y~~~G~~~--~----~~~~vv~~hG~~~~-----------~~~~----~~~~~~l~~~g~~vi~~d~~---g~ 65 (356)
T 2e3j_A 10 CRGTRIHAVADSPPD--Q----QGPLVVLLHGFPES-----------WYSW----RHQIPALAGAGYRVVAIDQR---GY 65 (356)
T ss_dssp ETTEEEEEEEECCTT--C----CSCEEEEECCTTCC-----------GGGG----TTTHHHHHHTTCEEEEECCT---TS
T ss_pred cCCeEEEEEEecCCC--C----CCCEEEEECCCCCc-----------HHHH----HHHHHHHHHcCCEEEEEcCC---CC
Confidence 478899988887653 1 13688999997421 1112 13466788899999996665 45
Q ss_pred CCCCCc----hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCC
Q 005240 570 GDKLPN----DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSY 637 (706)
Q Consensus 570 g~~~~~----~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~ 637 (706)
|.+... ........+|+.++++.+ +.+++.++|||+||++++.++.++|++++++|+.++..
T Consensus 66 g~s~~~~~~~~~~~~~~~~~~~~~~~~l------~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~ 131 (356)
T 2e3j_A 66 GRSSKYRVQKAYRIKELVGDVVGVLDSY------GAEQAFVVGHDWGAPVAWTFAWLHPDRCAGVVGISVPF 131 (356)
T ss_dssp TTSCCCCSGGGGSHHHHHHHHHHHHHHT------TCSCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESSCC
T ss_pred CCCCCCCcccccCHHHHHHHHHHHHHHc------CCCCeEEEEECHhHHHHHHHHHhCcHhhcEEEEECCcc
Confidence 544332 123455667777766654 45789999999999999999999999999999887644
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=98.97 E-value=3.5e-08 Score=100.80 Aligned_cols=227 Identities=14% Similarity=0.104 Sum_probs=126.4
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceee---cccCCCccccccccceEEec--CCcEEEEEec
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKP---LFESPDICLNAVFGSFVWVN--NSTLLIFTIP 106 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~---lt~~~~~~~~~~~~~~~wSp--Dg~~l~~~~~ 106 (706)
.+..++|||||++||..+. + ..|.++|+.+++... +..+.. .+..+.|+| +|++|+..+.
T Consensus 15 ~V~~v~~s~~g~~lasgs~--------D--~~v~lwd~~~~~~~~~~~l~gH~~-----~V~~v~~~~~~~~~~l~s~s~ 79 (316)
T 3bg1_A 15 MIHDAQMDYYGTRLATCSS--------D--RSVKIFDVRNGGQILIADLRGHEG-----PVWQVAWAHPMYGNILASCSY 79 (316)
T ss_dssp CEEEEEECGGGCEEEEEET--------T--TEEEEEEEETTEEEEEEEEECCSS-----CEEEEEECCGGGSSCEEEEET
T ss_pred eEEEeeEcCCCCEEEEEeC--------C--CeEEEEEecCCCcEEEEEEcCCCc-----cEEEEEeCCCCCCCEEEEEEC
Confidence 5788999999999987653 3 455666666654322 222222 377889986 4887776642
Q ss_pred CCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCCce---ecCCC-ceEeeee
Q 005240 107 SSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAK---DFGTP-AVYTAVE 181 (706)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~~---~lt~~-~~~~~~~ 181 (706)
+ ..|.++++ +++.. .+... ..+..++
T Consensus 80 D-------------------------------------------------~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~ 110 (316)
T 3bg1_A 80 D-------------------------------------------------RKVIIWREENGTWEKSHEHAGHDSSVNSVC 110 (316)
T ss_dssp T-------------------------------------------------SCEEEECCSSSCCCEEEEECCCSSCCCEEE
T ss_pred C-------------------------------------------------CEEEEEECCCCcceEEEEccCCCCceEEEE
Confidence 1 45666777 44322 22223 5678999
Q ss_pred eCCC--CcEEEEEeeccCcccccccccccceEEEEecCCCe-eEEcccCCCCCCCCcccCccCCCCcceeeecCCC----
Q 005240 182 PSPD--QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL-VRELCDLPPAEDIPVCYNSVREGMRSISWRADKP---- 254 (706)
Q Consensus 182 ~SpD--G~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~---- 254 (706)
|+|| |+.|+..+.+ ..|.+|++.++. ........... .....+.|+|++.
T Consensus 111 ~~p~~~g~~lasgs~D-------------~~i~lwd~~~~~~~~~~~~~~~h~----------~~v~~~~~~~~~~~~~~ 167 (316)
T 3bg1_A 111 WAPHDYGLILACGSSD-------------GAISLLTYTGEGQWEVKKINNAHT----------IGCNAVSWAPAVVPGSL 167 (316)
T ss_dssp ECCTTTCSCEEEECSS-------------SCEEEEEECSSSCEEECCBTTSSS----------SCBCCCEECCCCCC---
T ss_pred ECCCCCCcEEEEEcCC-------------CCEEEEecCCCCCcceeeeecccc----------CCcceEEEccccCCccc
Confidence 9998 7777655443 378899987542 21111111110 1234678888742
Q ss_pred ------------ceEEEEEeccCCCCccccCccceeeeecCCCCCCC-Cce---EEeecccccccceecCCC----ceEE
Q 005240 255 ------------STLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGE-KPE---ILHKLDLRFRSVSWCDDS----LALV 314 (706)
Q Consensus 255 ------------~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~~~---~l~~~~~~~~~~~wspDg----~~l~ 314 (706)
..|+ . . .....|.+||+ ..+ ..+ .+..+...+..+.|+|++ ..|+
T Consensus 168 ~~~~~~~~~~~~~~l~-s---g--------s~D~~v~lWd~---~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~la 232 (316)
T 3bg1_A 168 IDHPSGQKPNYIKRFA-S---G--------GCDNLIKLWKE---EEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIA 232 (316)
T ss_dssp ---CCSCCCCCCCBEE-C---C--------BTTSBCCEEEE---CTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEE
T ss_pred cccccccCccccceEE-E---e--------cCCCeEEEEEe---CCCCccceeeecccCCCceEEEEecCCCCCCCceEE
Confidence 1021 1 1 11224677777 322 222 234456678899999997 5666
Q ss_pred EEeeccccceEEEEEcCCCC---CCCceeeecCcccccccCCCCCceEeccCCCEEEEee
Q 005240 315 NETWYKTSQTRTWLVCPGSK---DVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 315 ~~~~~~~~~~~l~~~d~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 371 (706)
..+. ++..+|| ++.+. ......+... ......+.|+|+|++|+...
T Consensus 233 s~s~--D~~v~iw--~~~~~~~~~~~~~~~~~~-------~~~v~~v~~sp~g~~las~~ 281 (316)
T 3bg1_A 233 SCSQ--DGRVFIW--TCDDASSNTWSPKLLHKF-------NDVVWHVSWSITANILAVSG 281 (316)
T ss_dssp EEET--TCEEEEE--ECSSTTCCCCBCCEEEEC-------SSCEEEEEECTTTCCEEEEE
T ss_pred EEcC--CCeEEEE--EccCccccchhhhhhhcC-------CCcEEEEEEcCCCCEEEEEc
Confidence 5542 2344455 44431 1111222111 01123478999999887664
|
| >2ocg_A Valacyclovir hydrolase; alpha beta hydrolase fold; 1.75A {Homo sapiens} PDB: 2oci_A* 2ock_A 2ocl_A | Back alignment and structure |
|---|
Probab=98.97 E-value=6e-09 Score=102.71 Aligned_cols=114 Identities=18% Similarity=0.125 Sum_probs=73.4
Q ss_pred CCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCC
Q 005240 491 DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEG 570 (706)
Q Consensus 491 dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g 570 (706)
+|..++....-+ + .|.||++||.+.. +...+ ...+..|++.||.|++.+.+ |+|
T Consensus 10 ~g~~l~~~~~g~-----~----~~~vvllHG~~~~----------~~~~~----~~~~~~l~~~g~~vi~~D~~---G~G 63 (254)
T 2ocg_A 10 NGVQLHYQQTGE-----G----DHAVLLLPGMLGS----------GETDF----GPQLKNLNKKLFTVVAWDPR---GYG 63 (254)
T ss_dssp TTEEEEEEEEEC-----C----SEEEEEECCTTCC----------HHHHC----HHHHHHSCTTTEEEEEECCT---TST
T ss_pred CCEEEEEEEecC-----C----CCeEEEECCCCCC----------Cccch----HHHHHHHhhCCCeEEEECCC---CCC
Confidence 677777554421 1 2568889995310 01111 13456677789999996665 455
Q ss_pred CCCCch-----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCC
Q 005240 571 DKLPND-----RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 636 (706)
Q Consensus 571 ~~~~~~-----~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~ 636 (706)
.+.... ......++|+ ++++.+. +..++.++||||||.+++.++.++|++++++|+.++.
T Consensus 64 ~S~~~~~~~~~~~~~~~~~~~---~~~l~~l---~~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~ 128 (254)
T 2ocg_A 64 HSRPPDRDFPADFFERDAKDA---VDLMKAL---KFKKVSLLGWSDGGITALIAAAKYPSYIHKMVIWGAN 128 (254)
T ss_dssp TCCSSCCCCCTTHHHHHHHHH---HHHHHHT---TCSSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCC
T ss_pred CCCCCCCCCChHHHHHHHHHH---HHHHHHh---CCCCEEEEEECHhHHHHHHHHHHChHHhhheeEeccc
Confidence 543221 1133334444 4444443 3468999999999999999999999999999988764
|
| >4dnp_A DAD2; alpha/beta hydrolase, hydrolase; 2.15A {Petunia hybrida} PDB: 4dnq_A | Back alignment and structure |
|---|
Probab=98.97 E-value=1.7e-09 Score=107.14 Aligned_cols=100 Identities=18% Similarity=0.117 Sum_probs=69.5
Q ss_pred ceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCCCC----c--hhhHHHHHHHH
Q 005240 513 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLP----N--DRFVEQLVSSA 586 (706)
Q Consensus 513 ~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~----~--~~~~~~~~~D~ 586 (706)
.|+||++||.+.. ...+. ..+..|++ ||.|+..+.+ |+|.+.. . ........+|+
T Consensus 20 ~p~vv~~HG~~~~-----------~~~~~----~~~~~l~~-g~~v~~~D~~---G~G~S~~~~~~~~~~~~~~~~~~~~ 80 (269)
T 4dnp_A 20 ERVLVLAHGFGTD-----------QSAWN----RILPFFLR-DYRVVLYDLV---CAGSVNPDFFDFRRYTTLDPYVDDL 80 (269)
T ss_dssp SSEEEEECCTTCC-----------GGGGT----TTGGGGTT-TCEEEEECCT---TSTTSCGGGCCTTTCSSSHHHHHHH
T ss_pred CCEEEEEeCCCCc-----------HHHHH----HHHHHHhC-CcEEEEEcCC---CCCCCCCCCCCccccCcHHHHHHHH
Confidence 3789999996421 11121 22344555 9999996665 4555532 1 11345566666
Q ss_pred HHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCC
Q 005240 587 EAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSY 637 (706)
Q Consensus 587 ~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~ 637 (706)
.++++.+ +.+++.++|||+||++++.++.++|+++++++..++..
T Consensus 81 ~~~~~~~------~~~~~~l~GhS~Gg~~a~~~a~~~p~~v~~lvl~~~~~ 125 (269)
T 4dnp_A 81 LHILDAL------GIDCCAYVGHSVSAMIGILASIRRPELFSKLILIGASP 125 (269)
T ss_dssp HHHHHHT------TCCSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCS
T ss_pred HHHHHhc------CCCeEEEEccCHHHHHHHHHHHhCcHhhceeEEeCCCC
Confidence 6666554 34689999999999999999999999999999999864
|
| >3e0x_A Lipase-esterase related protein; APC60309, clostridium acetobutylicum ATCC 824, structural genomics, PSI-2; HET: MSE; 1.45A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=98.97 E-value=2.2e-09 Score=104.56 Aligned_cols=104 Identities=13% Similarity=0.105 Sum_probs=71.0
Q ss_pred ceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCCCCc-hhhHHHHHHHHHHHHH
Q 005240 513 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPN-DRFVEQLVSSAEAAVE 591 (706)
Q Consensus 513 ~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~-~~~~~~~~~D~~~~~~ 591 (706)
.|+||++||.+.. ...+. ....|+ .||.|+..+.+ |+|.+... ........+|+..+++
T Consensus 16 ~~~vv~~hG~~~~-----------~~~~~-----~~~~l~-~g~~v~~~d~~---g~g~s~~~~~~~~~~~~~~~~~~~~ 75 (245)
T 3e0x_A 16 PNTLLFVHGSGCN-----------LKIFG-----ELEKYL-EDYNCILLDLK---GHGESKGQCPSTVYGYIDNVANFIT 75 (245)
T ss_dssp SCEEEEECCTTCC-----------GGGGT-----TGGGGC-TTSEEEEECCT---TSTTCCSCCCSSHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCccc-----------HHHHH-----HHHHHH-hCCEEEEecCC---CCCCCCCCCCcCHHHHHHHHHHHHH
Confidence 4789999997421 11111 122233 89999996665 44444332 2235566777777774
Q ss_pred HHHHcCCCCCCcEEEEEechHHHHHHHHHHh-CCCceeEEEeccCCCCC
Q 005240 592 EVVRRGVADPSRIAVGGHSYGAFMTAHLLAH-APHLFCCGIARSGSYNK 639 (706)
Q Consensus 592 ~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~-~p~~~~a~v~~~~~~d~ 639 (706)
+...+..++ ++.++|||+||.+++.++.+ +|+ ++++++.+|....
T Consensus 76 ~~~~~~~~~--~~~l~G~S~Gg~~a~~~a~~~~p~-v~~lvl~~~~~~~ 121 (245)
T 3e0x_A 76 NSEVTKHQK--NITLIGYSMGGAIVLGVALKKLPN-VRKVVSLSGGARF 121 (245)
T ss_dssp HCTTTTTCS--CEEEEEETHHHHHHHHHHTTTCTT-EEEEEEESCCSBC
T ss_pred hhhhHhhcC--ceEEEEeChhHHHHHHHHHHhCcc-ccEEEEecCCCcc
Confidence 443333344 99999999999999999999 999 9999999987654
|
| >3oos_A Alpha/beta hydrolase family protein; APC67239.0, protein structure initiative, PSI-2, structural midwest center for structural genomics, MCSG; HET: MSE PG4; 1.65A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=98.96 E-value=2e-09 Score=107.05 Aligned_cols=100 Identities=16% Similarity=0.107 Sum_probs=69.7
Q ss_pred eEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCCCCc----hhhHHHHHHHHHHH
Q 005240 514 PCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPN----DRFVEQLVSSAEAA 589 (706)
Q Consensus 514 p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~----~~~~~~~~~D~~~~ 589 (706)
|+||++||.+.. . ..+. .....|++ ||.|+..+.+ |+|.+... ........+|+...
T Consensus 24 ~~vv~~HG~~~~--------~---~~~~----~~~~~L~~-~~~vi~~d~~---G~G~s~~~~~~~~~~~~~~~~~~~~~ 84 (278)
T 3oos_A 24 PPLCVTHLYSEY--------N---DNGN----TFANPFTD-HYSVYLVNLK---GCGNSDSAKNDSEYSMTETIKDLEAI 84 (278)
T ss_dssp SEEEECCSSEEC--------C---TTCC----TTTGGGGG-TSEEEEECCT---TSTTSCCCSSGGGGSHHHHHHHHHHH
T ss_pred CeEEEEcCCCcc--------h---HHHH----HHHHHhhc-CceEEEEcCC---CCCCCCCCCCcccCcHHHHHHHHHHH
Confidence 578999997421 1 1121 22345555 9999996665 45555432 12345556666665
Q ss_pred HHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCC
Q 005240 590 VEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYN 638 (706)
Q Consensus 590 ~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d 638 (706)
++.+ +.+++.++|||+||.+++.++.++|++++++|+.+|...
T Consensus 85 ~~~l------~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~vl~~~~~~ 127 (278)
T 3oos_A 85 REAL------YINKWGFAGHSAGGMLALVYATEAQESLTKIIVGGAAAS 127 (278)
T ss_dssp HHHT------TCSCEEEEEETHHHHHHHHHHHHHGGGEEEEEEESCCSB
T ss_pred HHHh------CCCeEEEEeecccHHHHHHHHHhCchhhCeEEEecCccc
Confidence 5544 346899999999999999999999999999999998765
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.96 E-value=6.6e-08 Score=99.41 Aligned_cols=217 Identities=12% Similarity=0.094 Sum_probs=118.3
Q ss_pred ceeEeecCCCCCCCCeeeeecCC---CCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCC-------cee
Q 005240 6 GIGIHRLLPDDSLGPEKEVHGYP---DGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETG-------EAK 75 (706)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~i~~~~---~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g-------~~~ 75 (706)
.|.|.++.. +..+.+..+. ....+..++|||||+.||.... ++ .|.+++++.+ +..
T Consensus 35 ~i~lw~~~~----~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~--------D~--~v~iw~~~~~~~~~~~~~~~ 100 (330)
T 2hes_X 35 KIKLVSVKY----DDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSF--------DS--TVSIWAKEESADRTFEMDLL 100 (330)
T ss_dssp CEEEEECSS----SCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEET--------TS--CEEEEEC-------CCCEEE
T ss_pred EEEEEEecC----CCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeC--------CC--cEEEEEcccCcCccccceeE
Confidence 578888865 4333332221 2235888999999999987653 44 4445555322 111
Q ss_pred e-cccCCCccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhc
Q 005240 76 P-LFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYY 154 (706)
Q Consensus 76 ~-lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 154 (706)
. +..+.. .+..+.|+|||++|+..+.+
T Consensus 101 ~~~~~h~~-----~V~~v~~sp~g~~las~s~D----------------------------------------------- 128 (330)
T 2hes_X 101 AIIEGHEN-----EVKGVAWSNDGYYLATCSRD----------------------------------------------- 128 (330)
T ss_dssp EEEC---------CEEEEEECTTSCEEEEEETT-----------------------------------------------
T ss_pred EEEcCCCC-----cEEEEEECCCCCEEEEEeCC-----------------------------------------------
Confidence 1 221222 37789999999998876531
Q ss_pred ccceEEEEcc-CC-C-c---eecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccC
Q 005240 155 TTAQLVLGSL-DG-T-A---KDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDL 227 (706)
Q Consensus 155 ~~~~l~~~~l-~g-~-~---~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 227 (706)
+.|.++++ .+ + . ..+... ..+..++|+|||+.|+..+.+ ..|.+|++..+..+.+...
T Consensus 129 --~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D-------------~~i~iW~~~~~~~~~~~~~ 193 (330)
T 2hes_X 129 --KSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYD-------------DTVRIWKDYDDDWECVAVL 193 (330)
T ss_dssp --SCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETT-------------SCEEEEEEETTEEEEEEEE
T ss_pred --CEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCC-------------CeEEEEECCCCCeeEEEEc
Confidence 45666666 22 1 1 223333 678899999999988765543 3688998865432222222
Q ss_pred CCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCc------e---EEee-c
Q 005240 228 PPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP------E---ILHK-L 297 (706)
Q Consensus 228 ~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~------~---~l~~-~ 297 (706)
.+.. ..+..+.|+|++...++.....+ ..|.+|++ .++.. . .+.. +
T Consensus 194 ~~h~----------~~v~~~~~~~~~~~~~l~s~s~D-----------~~v~iw~~---~~~~~~~~~~~~~~~~~~~~h 249 (330)
T 2hes_X 194 NGHE----------GTVWSSDFDKTEGVFRLCSGSDD-----------STVRVWKY---MGDDEDDQQEWVCEAILPDVH 249 (330)
T ss_dssp CCCS----------SCEEEEEECCSSSSCEEEEEETT-----------SCEEEEEE---EEECTTSCEEEEEEEECCSCC
T ss_pred cCCC----------CcEEEEEecCCCCeeEEEEEeCC-----------CeEEEEEe---cCCCccccceeEEeeeccccc
Confidence 1111 12457789998532122221111 13556665 22110 1 1122 4
Q ss_pred ccccccceecCCCceEEEEeeccccceEEEEEc
Q 005240 298 DLRFRSVSWCDDSLALVNETWYKTSQTRTWLVC 330 (706)
Q Consensus 298 ~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d 330 (706)
...+..+.|++++ .|+..+ .++..+||...
T Consensus 250 ~~~v~~v~~s~~~-~l~s~~--~dg~v~iw~~~ 279 (330)
T 2hes_X 250 KRQVYNVAWGFNG-LIASVG--ADGVLAVYEEV 279 (330)
T ss_dssp SSCEEEEEECTTS-CEEEEE--TTSCEEEEEEE
T ss_pred ccceEEEEEcCCC-EEEEEe--CCCEEEEEEcC
Confidence 5567889999776 455543 23455566543
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.96 E-value=8.6e-08 Score=102.66 Aligned_cols=196 Identities=11% Similarity=0.037 Sum_probs=113.6
Q ss_pred CcccceeeCC-CCCeEEEEeeccccccccCCceeEEEEEcCC---Ccee--ecc-cCCCccccccccceEEecCCcEEEE
Q 005240 31 AKINFVSWSP-DGKRIAFSVRVDEEDNVSSCKLRVWIADAET---GEAK--PLF-ESPDICLNAVFGSFVWVNNSTLLIF 103 (706)
Q Consensus 31 ~~~~~~~~SP-DG~~laf~~~~~~~~~~~~~~~~l~~~d~~~---g~~~--~lt-~~~~~~~~~~~~~~~wSpDg~~l~~ 103 (706)
..+..++||| ||++||.... + ..|.++++.+ +... .++ .+.. .+..+.|+||++.|+.
T Consensus 64 ~~V~~~~~s~~~~~~l~s~s~--------d--g~v~vwd~~~~~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l~s 128 (437)
T 3gre_A 64 NSITSSAVSPGETPYLITGSD--------Q--GVIKIWNLKEIIVGEVYSSSLTYDCSS-----TVTQITMIPNFDAFAV 128 (437)
T ss_dssp SCEEEEEEECSSSCEEEEEET--------T--SEEEEEEHHHHHTTCCCSCSEEEECSS-----CEEEEEECTTSSEEEE
T ss_pred CceEEEEECCCCCCEEEEecC--------C--ceEEEeECcccccCcccceeeeccCCC-----CEEEEEEeCCCCEEEE
Confidence 3688999999 9999988653 3 4666677665 4311 111 1222 3778999999998887
Q ss_pred EecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc----CCCceecC-------
Q 005240 104 TIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL----DGTAKDFG------- 172 (706)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l----~g~~~~lt------- 172 (706)
.+.+ +.|.++++ +|+.....
T Consensus 129 ~s~d-------------------------------------------------g~i~vwd~~~~~~~~~~~~~~~~~i~~ 159 (437)
T 3gre_A 129 SSKD-------------------------------------------------GQIIVLKVNHYQQESEVKFLNCECIRK 159 (437)
T ss_dssp EETT-------------------------------------------------SEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred EeCC-------------------------------------------------CEEEEEEeccccCCceeeccccceeEE
Confidence 6531 23333333 22221111
Q ss_pred -------CCceEeeee--eCCCCcEEEEEeeccCcccccccccccceEEEEecCCCee-EEcccCCCCCCCCcccCccCC
Q 005240 173 -------TPAVYTAVE--PSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIPVCYNSVRE 242 (706)
Q Consensus 173 -------~~~~~~~~~--~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~l~~~~~~~~~p~~~~~~~~ 242 (706)
....+..+. ++||++.|+..+.. ..|.+||+.+++. ..+...... .
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-------------~~i~iwd~~~~~~~~~~~~~~h~-----------~ 215 (437)
T 3gre_A 160 INLKNFGKNEYAVRMRAFVNEEKSLLVALTNL-------------SRVIIFDIRTLERLQIIENSPRH-----------G 215 (437)
T ss_dssp EEGGGGSSCCCEEEEEEEECSSCEEEEEEETT-------------SEEEEEETTTCCEEEEEECCGGG-----------C
T ss_pred EEccCcccccCceEEEEEEcCCCCEEEEEeCC-------------CeEEEEeCCCCeeeEEEccCCCC-----------C
Confidence 112233333 67888888766543 3799999986544 333321000 1
Q ss_pred CCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceE-Ee-ecccccccc----eecCCCceEEEE
Q 005240 243 GMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEI-LH-KLDLRFRSV----SWCDDSLALVNE 316 (706)
Q Consensus 243 g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~-l~-~~~~~~~~~----~wspDg~~l~~~ 316 (706)
.+..++|+|+++. |+... .+ +.|.+||+ ..++... +. .....+..+ .|+||++.|+..
T Consensus 216 ~v~~~~~s~~~~~-l~s~~-~d-----------g~i~iwd~---~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~ 279 (437)
T 3gre_A 216 AVSSICIDEECCV-LILGT-TR-----------GIIDIWDI---RFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGG 279 (437)
T ss_dssp CEEEEEECTTSCE-EEEEE-TT-----------SCEEEEET---TTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEE
T ss_pred ceEEEEECCCCCE-EEEEc-CC-----------CeEEEEEc---CCccEEEEEecCCCCceEEEEeccccCCCccEEEEE
Confidence 2457899999886 54321 11 24788888 4444332 22 334456666 566778877765
Q ss_pred eeccccceEEEEEcCCCC
Q 005240 317 TWYKTSQTRTWLVCPGSK 334 (706)
Q Consensus 317 ~~~~~~~~~l~~~d~~~~ 334 (706)
+ ....|.++|+.++
T Consensus 280 ~----~dg~i~iwd~~~~ 293 (437)
T 3gre_A 280 S----SKTFLTIWNFVKG 293 (437)
T ss_dssp S----TTEEEEEEETTTT
T ss_pred c----CCCcEEEEEcCCC
Confidence 4 2335777888764
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.95 E-value=1.4e-07 Score=95.20 Aligned_cols=231 Identities=11% Similarity=-0.004 Sum_probs=135.0
Q ss_pred ceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccc
Q 005240 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (706)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 85 (706)
.|+..+.+. + .+.+.. + ......++++|||+.++.. .+...|++++.++|+.+.+........
T Consensus 51 ~i~~~~~~~----~-~~~~~~-~-~~~~~~l~~~~dg~l~v~~----------~~~~~i~~~d~~~g~~~~~~~~~~~~~ 113 (296)
T 3e5z_A 51 RTWAWSDDG----Q-LSPEMH-P-SHHQNGHCLNKQGHLIACS----------HGLRRLERQREPGGEWESIADSFEGKK 113 (296)
T ss_dssp EEEEEETTS----C-EEEEES-S-CSSEEEEEECTTCCEEEEE----------TTTTEEEEECSTTCCEEEEECEETTEE
T ss_pred EEEEEECCC----C-eEEEEC-C-CCCcceeeECCCCcEEEEe----------cCCCeEEEEcCCCCcEEEEeeccCCCC
Confidence 455556544 5 555542 2 2246788999999855432 334689999998888776643211110
Q ss_pred cccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccC
Q 005240 86 NAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD 165 (706)
Q Consensus 86 ~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~ 165 (706)
...+..+.++|||+. +++........ ..... .. ........||.++.+
T Consensus 114 ~~~~~~i~~d~~G~l-~vtd~~~g~~~-~~~~~-~~-----------------------------~~~~~~~~l~~~~~~ 161 (296)
T 3e5z_A 114 LNSPNDVCLAPDGSL-WFSDPTYGIDK-PEEGY-GG-----------------------------EMELPGRWVFRLAPD 161 (296)
T ss_dssp CCCCCCEEECTTSCE-EEEECSHHHHC-GGGSS-CC-----------------------------CCCSSSCEEEEECTT
T ss_pred CCCCCCEEECCCCCE-EEECCcccccc-ccccc-cc-----------------------------cccCCCcEEEEECCC
Confidence 112457899999984 44311000000 00000 00 000012589999988
Q ss_pred CCceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecC-CCee---EEcccCCCCCCCCcccCcc
Q 005240 166 GTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD-GKLV---RELCDLPPAEDIPVCYNSV 240 (706)
Q Consensus 166 g~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~---~~l~~~~~~~~~p~~~~~~ 240 (706)
|+.+.+... .....++|+|||+.| +.... ...|++|+++ .+.. +.+... ..
T Consensus 162 g~~~~~~~~~~~~~gi~~s~dg~~l-v~~~~------------~~~i~~~~~~~~g~~~~~~~~~~~--~~--------- 217 (296)
T 3e5z_A 162 GTLSAPIRDRVKPNGLAFLPSGNLL-VSDTG------------DNATHRYCLNARGETEYQGVHFTV--EP--------- 217 (296)
T ss_dssp SCEEEEECCCSSEEEEEECTTSCEE-EEETT------------TTEEEEEEECSSSCEEEEEEEECC--SS---------
T ss_pred CCEEEeecCCCCCccEEECCCCCEE-EEeCC------------CCeEEEEEECCCCcCcCCCeEeeC--CC---------
Confidence 766666544 566789999999998 65543 2479999986 3333 222211 11
Q ss_pred CCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeeccccccccee-cCCCceEEEEeec
Q 005240 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSW-CDDSLALVNETWY 319 (706)
Q Consensus 241 ~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~w-spDg~~l~~~~~~ 319 (706)
..+..+.+++||+ |++.. . ..|++++. ++.....+..... ...+.| +||++.|+.++.
T Consensus 218 -~~p~~i~~d~~G~--l~v~~--~-----------~~v~~~~~---~g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~- 276 (296)
T 3e5z_A 218 -GKTDGLRVDAGGL--IWASA--G-----------DGVHVLTP---DGDELGRVLTPQT-TSNLCFGGPEGRTLYMTVS- 276 (296)
T ss_dssp -SCCCSEEEBTTSC--EEEEE--T-----------TEEEEECT---TSCEEEEEECSSC-CCEEEEESTTSCEEEEEET-
T ss_pred -CCCCeEEECCCCC--EEEEc--C-----------CeEEEECC---CCCEEEEEECCCC-ceeEEEECCCCCEEEEEcC-
Confidence 1234678999996 55442 1 24778887 5444444543444 778889 689988887652
Q ss_pred cccceEEEEEcCCCC
Q 005240 320 KTSQTRTWLVCPGSK 334 (706)
Q Consensus 320 ~~~~~~l~~~d~~~~ 334 (706)
..||++++.+.
T Consensus 277 ----~~l~~~~~~~~ 287 (296)
T 3e5z_A 277 ----TEFWSIETNVR 287 (296)
T ss_dssp ----TEEEEEECSCC
T ss_pred ----CeEEEEEcccc
Confidence 25999998874
|
| >2bce_A Cholesterol esterase; hydrolase, serine esterase, lipase; 1.60A {Bos taurus} SCOP: c.69.1.1 PDB: 1akn_A* 1aql_A* 1f6w_A 1jmy_A | Back alignment and structure |
|---|
Probab=98.95 E-value=6.5e-10 Score=122.06 Aligned_cols=142 Identities=18% Similarity=0.185 Sum_probs=90.0
Q ss_pred EEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHH-CCeEEEEcCCC-
Q 005240 487 YQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA-RRFAVLAGPSI- 564 (706)
Q Consensus 487 ~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~G~~v~~~~~~- 564 (706)
+.+.|...+ -+|.|..... ...++|+||++|||++..|+..... +..........|++ .|++|+..+||
T Consensus 75 ~~sedcl~l--nv~~P~~~~~-~~~~~PV~v~iHGGg~~~Gs~~~~~------~~~~~~~~~~~la~~~~vvvV~~nYRL 145 (579)
T 2bce_A 75 YGNEDCLYL--NIWVPQGRKE-VSHDLPVMIWIYGGAFLMGASQGAN------FLSNYLYDGEEIATRGNVIVVTFNYRV 145 (579)
T ss_dssp ESCSCCCEE--EEEEEECSSS-CCCSEEEEEECCCCSEEEC-------------CTTGGGCCHHHHHHHTCEEEEECCCC
T ss_pred CCCCCCCEE--EEEECCCCCC-CCCCCeEEEEECCCcccCCCCCccc------cccccccChHHHhcCCCEEEEEeCCcc
Confidence 345676555 4778876421 1125899999999976533221100 00000011244554 57999998887
Q ss_pred CcCCCCCCCCchhhHHHHHHHHHHHHHHHHHc--CC-CCCCcEEEEEechHHHHHHHHHHh--CCCceeEEEeccCCC
Q 005240 565 PIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRR--GV-ADPSRIAVGGHSYGAFMTAHLLAH--APHLFCCGIARSGSY 637 (706)
Q Consensus 565 ~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~--~~-id~~~i~i~G~S~GG~~a~~~~~~--~p~~~~a~v~~~~~~ 637 (706)
+..|+........-++..+.|+..|++|++++ .+ .||+||.|+|+|+||+++.+++.. ...+|+++|+.+|..
T Consensus 146 g~~Gfl~~~~~~~pgn~gl~D~~~Al~wv~~ni~~fGgDp~~Vti~G~SAGg~~~~~~~~~~~~~~lf~~ai~~Sg~~ 223 (579)
T 2bce_A 146 GPLGFLSTGDSNLPGNYGLWDQHMAIAWVKRNIEAFGGDPDQITLFGESAGGASVSLQTLSPYNKGLIKRAISQSGVG 223 (579)
T ss_dssp HHHHHCCCSSTTCCCCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTTCSEEEEESCCT
T ss_pred ccccCCcCCCCCCCCccchHHHHHHHHHHHHHHHHhCCCcccEEEecccccchheeccccCcchhhHHHHHHHhcCCc
Confidence 44344322111111233478999999999885 23 799999999999999999988875 346899999998853
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=98.95 E-value=3.2e-07 Score=99.07 Aligned_cols=285 Identities=8% Similarity=0.027 Sum_probs=154.8
Q ss_pred eeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCCC
Q 005240 37 SWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKT 116 (706)
Q Consensus 37 ~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~ 116 (706)
.+++|+++|+.... ...|.++|+.+++......... ..+..+.|+|++ .|+..+.
T Consensus 127 ~~~~~~~~l~sgs~----------dg~i~vwd~~~~~~~~~~~~h~----~~V~~l~~~~~~-~l~s~s~---------- 181 (464)
T 3v7d_B 127 CLQFEDNYVITGAD----------DKMIRVYDSINKKFLLQLSGHD----GGVWALKYAHGG-ILVSGST---------- 181 (464)
T ss_dssp EEEEETTEEEEEET----------TSCEEEEETTTTEEEEEECCCS----SCEEEEEECSTT-EEEEEET----------
T ss_pred EEEECCCEEEEEcC----------CCcEEEEECCCCcEEEEEeCCC----cCEEEEEEcCCC-EEEEEeC----------
Confidence 46678888877542 3567778988887554432221 137789999999 5554432
Q ss_pred CCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCC-ceecCCC-ceEeeeeeC--CCCcEEEE
Q 005240 117 MVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGTP-AVYTAVEPS--PDQKYVLI 191 (706)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~-~~~lt~~-~~~~~~~~S--pDG~~i~~ 191 (706)
.+.|.++++ +++ ...+... ..+..++|+ |+++.|+.
T Consensus 182 ---------------------------------------dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s 222 (464)
T 3v7d_B 182 ---------------------------------------DRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVT 222 (464)
T ss_dssp ---------------------------------------TSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEE
T ss_pred ---------------------------------------CCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEE
Confidence 156777888 553 3344433 677778877 67777776
Q ss_pred EeeccCcccccccccccceEEEEecCCCeeEEcccCCCCC--------CCCcccCcc-CCCCcceeeecCCCceEEEEEe
Q 005240 192 TSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAE--------DIPVCYNSV-REGMRSISWRADKPSTLYWVEA 262 (706)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~--------~~p~~~~~~-~~g~~~~~~spdg~~~l~~~~~ 262 (706)
.+.. ..|.+|++.+............. ..+...... .....-..++++++. |+...
T Consensus 223 ~s~d-------------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-l~~~~- 287 (464)
T 3v7d_B 223 GSRD-------------NTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNI-VVSGS- 287 (464)
T ss_dssp EETT-------------SCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTE-EEEEE-
T ss_pred EcCC-------------CcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCE-EEEEe-
Confidence 5543 37899998855422111100000 000000000 000112245677765 43221
Q ss_pred ccCCCCccccCccceeeeecCCCCCCCCc-eEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceee
Q 005240 263 QDRGDANVEVSPRDIIYTQPAEPAEGEKP-EILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVL 341 (706)
Q Consensus 263 ~~~~~~~~~~~~~~~l~~~d~~~~~~~~~-~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l 341 (706)
. ...|.++|+ .+++. ..+......+..+.|+||++.|+..+.+ ..|.++|+.++ +....
T Consensus 288 ~-----------d~~i~vwd~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d----g~i~vwd~~~~--~~~~~ 347 (464)
T 3v7d_B 288 Y-----------DNTLIVWDV---AQMKCLYILSGHTDRIYSTIYDHERKRCISASMD----TTIRIWDLENG--ELMYT 347 (464)
T ss_dssp T-----------TSCEEEEET---TTTEEEEEECCCSSCEEEEEEETTTTEEEEEETT----SCEEEEETTTT--EEEEE
T ss_pred C-----------CCeEEEEEC---CCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCC----CcEEEEECCCC--cEEEE
Confidence 1 224888888 44443 3344556778899999999988876522 24677777763 23322
Q ss_pred ecCcccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeeecccchhhhhh
Q 005240 342 FDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFET 421 (706)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~ 421 (706)
+......+ ..+.++ +++++....+ + .+..+|+.+++........
T Consensus 348 ~~~h~~~v------~~~~~~--~~~l~s~s~d----g-----------------~v~vwd~~~~~~~~~~~~~------- 391 (464)
T 3v7d_B 348 LQGHTALV------GLLRLS--DKFLVSAAAD----G-----------------SIRGWDANDYSRKFSYHHT------- 391 (464)
T ss_dssp ECCCSSCE------EEEEEC--SSEEEEEETT----S-----------------EEEEEETTTCCEEEEEECT-------
T ss_pred EeCCCCcE------EEEEEc--CCEEEEEeCC----C-----------------cEEEEECCCCceeeeecCC-------
Confidence 22211111 123343 5555554311 1 3556677665432222111
Q ss_pred hhhhccCCCceecccCCCEEEEEEecCCCCcEEEEEECCCCceeE
Q 005240 422 AVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQ 466 (706)
Q Consensus 422 ~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~p~~v~~~~~~~~~~~~ 466 (706)
.......|++|++.++.. ++ ..|.+||+.+++...
T Consensus 392 -----~~~~~~~~~~~~~~l~~~-~d----g~i~iwd~~~g~~~~ 426 (464)
T 3v7d_B 392 -----NLSAITTFYVSDNILVSG-SE----NQFNIYNLRSGKLVH 426 (464)
T ss_dssp -----TCCCEEEEEECSSEEEEE-ET----TEEEEEETTTCCEEE
T ss_pred -----CCccEEEEEeCCCEEEEe-cC----CeEEEEECCCCcEEe
Confidence 112346899999866654 32 469999999887554
|
| >3om8_A Probable hydrolase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MES; 2.25A {Pseudomonas aeruginosa} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=98.95 E-value=2e-08 Score=99.79 Aligned_cols=117 Identities=19% Similarity=0.165 Sum_probs=80.7
Q ss_pred EEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCc
Q 005240 487 YQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPI 566 (706)
Q Consensus 487 ~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~ 566 (706)
+...||..|.....-+.+ .|+||++||.+.. ...|. .....|+ .+|.|+..+-+
T Consensus 9 ~~~~~g~~l~y~~~G~~~--------~p~lvl~hG~~~~-----------~~~w~----~~~~~L~-~~~~vi~~D~r-- 62 (266)
T 3om8_A 9 LATSDGASLAYRLDGAAE--------KPLLALSNSIGTT-----------LHMWD----AQLPALT-RHFRVLRYDAR-- 62 (266)
T ss_dssp EECTTSCEEEEEEESCTT--------SCEEEEECCTTCC-----------GGGGG----GGHHHHH-TTCEEEEECCT--
T ss_pred EeccCCcEEEEEecCCCC--------CCEEEEeCCCccC-----------HHHHH----HHHHHhh-cCcEEEEEcCC--
Confidence 456689999877764421 3778889995321 11111 2334444 58999985554
Q ss_pred CCCCCCCCc--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCC
Q 005240 567 IGEGDKLPN--DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 636 (706)
Q Consensus 567 ~g~g~~~~~--~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~ 636 (706)
|+|.+... ....+...+|+.+.++.+ .-+++.++||||||.+++.++.++|++++++|..++.
T Consensus 63 -G~G~S~~~~~~~~~~~~a~dl~~~l~~l------~~~~~~lvGhS~Gg~va~~~A~~~P~rv~~lvl~~~~ 127 (266)
T 3om8_A 63 -GHGASSVPPGPYTLARLGEDVLELLDAL------EVRRAHFLGLSLGGIVGQWLALHAPQRIERLVLANTS 127 (266)
T ss_dssp -TSTTSCCCCSCCCHHHHHHHHHHHHHHT------TCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred -CCCCCCCCCCCCCHHHHHHHHHHHHHHh------CCCceEEEEEChHHHHHHHHHHhChHhhheeeEecCc
Confidence 56655432 223556677777777655 2358999999999999999999999999999988653
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=98.94 E-value=1e-07 Score=96.32 Aligned_cols=221 Identities=15% Similarity=0.181 Sum_probs=127.4
Q ss_pred cceeEeecCCCCCCCCeeeeecCCC-CCcccceeeCCC--CCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCC
Q 005240 5 TGIGIHRLLPDDSLGPEKEVHGYPD-GAKINFVSWSPD--GKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESP 81 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~i~~~~~-~~~~~~~~~SPD--G~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~ 81 (706)
..|.|.++.. +..+.+..+.. ...+..+.|+|+ |+.||..+. + ..|.++|+++++..++....
T Consensus 31 ~~v~iw~~~~----~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~--------D--~~v~iWd~~~~~~~~~~~~~ 96 (297)
T 2pm7_B 31 KTIKIFEVEG----ETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSY--------D--GKVMIWKEENGRWSQIAVHA 96 (297)
T ss_dssp SCEEEEEBCS----SCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEET--------T--TEEEEEEBSSSCBCCCEEEC
T ss_pred CEEEEEecCC----CCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcC--------C--CEEEEEEcCCCceEEEEEee
Confidence 3578888864 32222222222 235888999974 888877642 3 46777788777533332111
Q ss_pred CccccccccceEEecC--CcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceE
Q 005240 82 DICLNAVFGSFVWVNN--STLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQL 159 (706)
Q Consensus 82 ~~~~~~~~~~~~wSpD--g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l 159 (706)
.. ...+..+.|+|+ |.+|+..+.+ +.|
T Consensus 97 ~h--~~~v~~v~~~p~~~g~~l~s~s~d-------------------------------------------------~~v 125 (297)
T 2pm7_B 97 VH--SASVNSVQWAPHEYGPMLLVASSD-------------------------------------------------GKV 125 (297)
T ss_dssp CC--SSCEEEEEECCGGGCSEEEEEETT-------------------------------------------------SEE
T ss_pred cC--CCceeEEEeCcCCCCcEEEEEECC-------------------------------------------------CcE
Confidence 11 113778999998 7887766421 456
Q ss_pred EEEccC-C-C--ceecCCC-ceEeeeeeCCC-------------CcEEEEEeeccCcccccccccccceEEEEecCCCe-
Q 005240 160 VLGSLD-G-T--AKDFGTP-AVYTAVEPSPD-------------QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL- 220 (706)
Q Consensus 160 ~~~~l~-g-~--~~~lt~~-~~~~~~~~SpD-------------G~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~- 220 (706)
.++++. + . ...+... ..+..++|+|+ ++.|+..+.+ ..|.+|++..++
T Consensus 126 ~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D-------------~~v~lwd~~~~~~ 192 (297)
T 2pm7_B 126 SVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGAD-------------NLVKIWKYNSDAQ 192 (297)
T ss_dssp EEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETT-------------SCEEEEEEETTTT
T ss_pred EEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCC-------------CcEEEEEEcCCCc
Confidence 667773 3 2 2223233 56788999997 4566544433 378999987543
Q ss_pred ----eEEcccCCCCCCCCcccCccCCCCcceeeecCC--CceEEEEEeccCCCCccccCccceeeeecCCCCCCCC--c-
Q 005240 221 ----VRELCDLPPAEDIPVCYNSVREGMRSISWRADK--PSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEK--P- 291 (706)
Q Consensus 221 ----~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg--~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~--~- 291 (706)
...+..+. ..+..++|+|++ ...|+-. ..+ ..|.+||+ +.+. .
T Consensus 193 ~~~~~~~l~~H~-------------~~V~~v~~sp~~~~~~~las~-s~D-----------~~v~iWd~---~~~~~~~~ 244 (297)
T 2pm7_B 193 TYVLESTLEGHS-------------DWVRDVAWSPTVLLRSYMASV-SQD-----------RTCIIWTQ---DNEQGPWK 244 (297)
T ss_dssp EEEEEEEECCCS-------------SCEEEEEECCCCSSSEEEEEE-ETT-----------SCEEEEEE---SSTTSCCE
T ss_pred eEEEEEEecCCC-------------CceEEEEECCCCCCceEEEEE-ECC-----------CcEEEEEe---CCCCCccc
Confidence 12222111 225588999996 2313322 111 23677777 3321 1
Q ss_pred eEEe---ecccccccceecCCCceEEEEeeccccceEEEEEcCCC
Q 005240 292 EILH---KLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (706)
Q Consensus 292 ~~l~---~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~ 333 (706)
..+. .....+..++|+|||+.|+..+. ++..+||..+..+
T Consensus 245 ~~~~~~~~~~~~v~~~~~s~~g~~las~~~--D~~v~lw~~~~~g 287 (297)
T 2pm7_B 245 KTLLKEEKFPDVLWRASWSLSGNVLALSGG--DNKVTLWKENLEG 287 (297)
T ss_dssp EEESSSSCCSSCEEEEEECSSSCCEEEEET--TSCEEEEEECTTS
T ss_pred eeeeecccCCCcEEEEEECCCCCEEEEEcC--CCcEEEEEECCCC
Confidence 1222 23556778899999999987653 3567788776553
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.94 E-value=2.2e-07 Score=95.36 Aligned_cols=225 Identities=10% Similarity=0.012 Sum_probs=131.2
Q ss_pred ccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCC
Q 005240 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDP 112 (706)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~ 112 (706)
...|.|+||++.|+++.. ....|++++.++++.+.+.. +. .+..+.|+|||+.++.. .
T Consensus 51 ~egp~~~~~~~~l~~~d~---------~~~~i~~~d~~~~~~~~~~~-~~-----~v~~i~~~~dg~l~v~~-~------ 108 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNI---------LERELHELHLASGRKTVHAL-PF-----MGSALAKISDSKQLIAS-D------ 108 (326)
T ss_dssp EEEEEEETTTTEEEEEEG---------GGTEEEEEETTTTEEEEEEC-SS-----CEEEEEEEETTEEEEEE-T------
T ss_pred CcCCeEeCCCCEEEEEEC---------CCCEEEEEECCCCcEEEEEC-CC-----cceEEEEeCCCeEEEEE-C------
Confidence 457999999999988752 24689999999887766542 22 26788999999865543 1
Q ss_pred CCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCCceecCCC------ceEeeeeeCCC
Q 005240 113 PKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP------AVYTAVEPSPD 185 (706)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~~~lt~~------~~~~~~~~SpD 185 (706)
..|+++++ +|+.+.+... ..+..++++||
T Consensus 109 --------------------------------------------~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~ 144 (326)
T 2ghs_A 109 --------------------------------------------DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPS 144 (326)
T ss_dssp --------------------------------------------TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTT
T ss_pred --------------------------------------------CCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCC
Confidence 35888888 5565554321 34678999999
Q ss_pred CcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccC
Q 005240 186 QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDR 265 (706)
Q Consensus 186 G~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~ 265 (706)
|+ |++....... ......|++++ + ++.+.+.... .....+.|+|||+. ||+....
T Consensus 145 G~-l~v~~~~~~~------~~~~~~l~~~~-~-g~~~~~~~~~-------------~~~~~i~~s~dg~~-lyv~~~~-- 199 (326)
T 2ghs_A 145 GA-LWIGTMGRKA------ETGAGSIYHVA-K-GKVTKLFADI-------------SIPNSICFSPDGTT-GYFVDTK-- 199 (326)
T ss_dssp SC-EEEEEEETTC------CTTCEEEEEEE-T-TEEEEEEEEE-------------SSEEEEEECTTSCE-EEEEETT--
T ss_pred CC-EEEEeCCCcC------CCCceEEEEEe-C-CcEEEeeCCC-------------cccCCeEEcCCCCE-EEEEECC--
Confidence 97 5555432110 00124788888 4 4555543211 01236799999987 7765311
Q ss_pred CCCccccCccceeeeecCCCCCCC-Cc---eEEeec---ccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCc
Q 005240 266 GDANVEVSPRDIIYTQPAEPAEGE-KP---EILHKL---DLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAP 338 (706)
Q Consensus 266 ~~~~~~~~~~~~l~~~d~~~~~~~-~~---~~l~~~---~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~ 338 (706)
...|++++.++ +++ .. +.+... ......+.+.++|..++... ....|+++++++ +.
T Consensus 200 ---------~~~I~~~d~~~-~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~----~~~~v~~~d~~g---~~ 262 (326)
T 2ghs_A 200 ---------VNRLMRVPLDA-RTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARW----GEGAVDRYDTDG---NH 262 (326)
T ss_dssp ---------TCEEEEEEBCT-TTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEE----TTTEEEEECTTC---CE
T ss_pred ---------CCEEEEEEccc-ccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEe----CCCEEEEECCCC---CE
Confidence 12477887621 134 22 223221 23445677888886443321 223689999854 22
Q ss_pred eeeecCcccccccCCCCCceEec-cCCCEEEEee
Q 005240 339 RVLFDRVFENVYSDPGSPMMTRT-STGTNVIAKI 371 (706)
Q Consensus 339 ~~l~~~~~~~~~~~~~~~~~~~s-~dg~~l~~~~ 371 (706)
.......... ...++|+ +|++.|++..
T Consensus 263 ~~~i~~~~~~------~~~~af~g~d~~~L~vt~ 290 (326)
T 2ghs_A 263 IARYEVPGKQ------TTCPAFIGPDASRLLVTS 290 (326)
T ss_dssp EEEEECSCSB------EEEEEEESTTSCEEEEEE
T ss_pred EEEEECCCCC------cEEEEEecCCCCEEEEEe
Confidence 2211111111 1235666 8888877765
|
| >3g9x_A Haloalkane dehalogenase; alpha/beta hydrolase, helical CAP domain, catalytic triad (A His272, Glu130), mutant, I135F, haloalkanes; 0.95A {Rhodococcus SP} SCOP: c.69.1.8 PDB: 3fwh_A 3fbw_A 3rlt_A 3rk4_A 1bn6_A 1bn7_A 4fwb_A 1cqw_A 3sk0_A 2v9z_A | Back alignment and structure |
|---|
Probab=98.94 E-value=6.1e-09 Score=104.96 Aligned_cols=113 Identities=14% Similarity=0.063 Sum_probs=78.1
Q ss_pred CCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCC
Q 005240 491 DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEG 570 (706)
Q Consensus 491 dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g 570 (706)
+|..+....+-+++ .|+||++||.+.. ...+. .....| +.||.|+..+.+ |+|
T Consensus 18 ~g~~l~~~~~g~~~--------~~~vl~lHG~~~~-----------~~~~~----~~~~~l-~~~~~v~~~d~~---G~G 70 (299)
T 3g9x_A 18 LGERMHYVDVGPRD--------GTPVLFLHGNPTS-----------SYLWR----NIIPHV-APSHRCIAPDLI---GMG 70 (299)
T ss_dssp TTEEEEEEEESCSS--------SCCEEEECCTTCC-----------GGGGT----TTHHHH-TTTSCEEEECCT---TST
T ss_pred CCeEEEEEecCCCC--------CCEEEEECCCCcc-----------HHHHH----HHHHHH-ccCCEEEeeCCC---CCC
Confidence 78888877764432 2578999997531 11121 234445 469999986665 445
Q ss_pred CCCCc--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCC
Q 005240 571 DKLPN--DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 636 (706)
Q Consensus 571 ~~~~~--~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~ 636 (706)
.+... ........+|+..+++++ +.+++.++|||+||++++.++.++|++++++|..++.
T Consensus 71 ~s~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~ 132 (299)
T 3g9x_A 71 KSDKPDLDYFFDDHVRYLDAFIEAL------GLEEVVLVIHDWGSALGFHWAKRNPERVKGIACMEFI 132 (299)
T ss_dssp TSCCCCCCCCHHHHHHHHHHHHHHT------TCCSEEEEEEHHHHHHHHHHHHHSGGGEEEEEEEEEC
T ss_pred CCCCCCCcccHHHHHHHHHHHHHHh------CCCcEEEEEeCccHHHHHHHHHhcchheeEEEEecCC
Confidence 44332 233555666776666654 4468999999999999999999999999999998844
|
| >1llf_A Lipase 3; candida cylindracea cholesterol esterase, sterol ester acylh hydrolase; HET: NAG F23; 1.40A {Candida cylindracea} SCOP: c.69.1.17 PDB: 1cle_A* 1lpm_A* 1lpn_A* 1lpo_A* 1lpp_A* 1lps_A* 1crl_A* 1trh_A* 3rar_A* 1gz7_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=1.9e-09 Score=117.62 Aligned_cols=135 Identities=21% Similarity=0.287 Sum_probs=89.7
Q ss_pred ccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHH-HHHH-HCCeEEEEcCCCCc
Q 005240 489 RKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSS-LIFL-ARRFAVLAGPSIPI 566 (706)
Q Consensus 489 ~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~-~~G~~v~~~~~~~~ 566 (706)
+.|. +...+|+|....+.+ ++|+||++|||++..|+.. .+. ...++ ..++ ..|++|+.++||..
T Consensus 94 sedc--l~l~v~~P~~~~~~~--~~Pv~v~iHGGg~~~g~~~--------~~~--~~~l~~~~~~~~~~~vvv~~nYRl~ 159 (534)
T 1llf_A 94 SEDC--LTINVVRPPGTKAGA--NLPVMLWIFGGGFEIGSPT--------IFP--PAQMVTKSVLMGKPIIHVAVNYRVA 159 (534)
T ss_dssp CSCC--CEEEEEECTTCCTTC--CEEEEEEECCSTTTSCCGG--------GSC--CHHHHHHHHHTTCCCEEEEECCCCH
T ss_pred CCCC--eEEEEEECCCCCCCC--CceEEEEEeCCCcccCCCc--------ccC--chHHHHHHHhcCCCEEEEEeCCCCC
Confidence 4566 445588998643332 5899999999987543221 111 11112 2233 36899999888844
Q ss_pred C-CCCCCC--CchhhHHHHHHHHHHHHHHHHHc--CC-CCCCcEEEEEechHHHHHHHHHHhC--------CCceeEEEe
Q 005240 567 I-GEGDKL--PNDRFVEQLVSSAEAAVEEVVRR--GV-ADPSRIAVGGHSYGAFMTAHLLAHA--------PHLFCCGIA 632 (706)
Q Consensus 567 ~-g~g~~~--~~~~~~~~~~~D~~~~~~~l~~~--~~-id~~~i~i~G~S~GG~~a~~~~~~~--------p~~~~a~v~ 632 (706)
. |+.... .....++..+.|+.+|++|++++ .+ .||+||.|+|+|+||++++.++... +.+|+++|+
T Consensus 160 ~~gf~~~~~~~~~~~~n~gl~D~~~Al~wv~~ni~~fggDp~~Vti~G~SaGg~~~~~~l~~~~~~~~~~~~~lf~~ai~ 239 (534)
T 1llf_A 160 SWGFLAGDDIKAEGSGNAGLKDQRLGMQWVADNIAGFGGDPSKVTIFGESAGSMSVLCHLIWNDGDNTYKGKPLFRAGIM 239 (534)
T ss_dssp HHHHCCSHHHHHHTCTTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGGCCEETTEESCSEEEE
T ss_pred CCCCCCcccccccCCCchhHHHHHHHHHHHHHHHHHhCCCcccEEEEEECHhHHHHHHHHcCCCccccccccchhHhHhh
Confidence 2 332110 00112345689999999999885 23 7999999999999999998887763 468999999
Q ss_pred ccCCC
Q 005240 633 RSGSY 637 (706)
Q Consensus 633 ~~~~~ 637 (706)
.+|..
T Consensus 240 ~Sg~~ 244 (534)
T 1llf_A 240 QSGAM 244 (534)
T ss_dssp ESCCS
T ss_pred hccCc
Confidence 99853
|
| >1dx4_A ACHE, acetylcholinesterase; hydrolase, serine esterase, synapse, membrane, nerve, muscle neurotransmitter degradation, glycoprotein; HET: NAG MAN BMA 760; 2.70A {Drosophila melanogaster} SCOP: c.69.1.1 PDB: 1qo9_A* 1qon_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=2.5e-09 Score=118.05 Aligned_cols=115 Identities=18% Similarity=0.187 Sum_probs=80.8
Q ss_pred CceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHH-CCeEEEEcCCC-CcCCCCCC-------CCchhhHHHH
Q 005240 512 PLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA-RRFAVLAGPSI-PIIGEGDK-------LPNDRFVEQL 582 (706)
Q Consensus 512 ~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~G~~v~~~~~~-~~~g~g~~-------~~~~~~~~~~ 582 (706)
++|+||++|||++..|+..... .....|++ .|++|+..+|| |..|+... ......++..
T Consensus 140 ~~PV~v~iHGGg~~~g~~~~~~------------~~~~~l~~~~~~vvv~~nYRlg~~Gfl~~~~~~~~~~~~~~~~n~g 207 (585)
T 1dx4_A 140 GLPILIWIYGGGFMTGSATLDI------------YNADIMAAVGNVIVASFQYRVGAFGFLHLAPEMPSEFAEEAPGNVG 207 (585)
T ss_dssp SEEEEEEECCSTTTCCCTTCGG------------GCCHHHHHHHTCEEEEECCCCTHHHHCCCGGGSCGGGTTSSCSCHH
T ss_pred CCCEEEEECCCcccCCCCCCCC------------CCchhhhccCCEEEEEecccccchhhcccccccccccCCCCCCccc
Confidence 5899999999987542221110 11245554 79999998887 44444321 0111123445
Q ss_pred HHHHHHHHHHHHHcC--C-CCCCcEEEEEechHHHHHHHHHHhC--CCceeEEEeccCCCC
Q 005240 583 VSSAEAAVEEVVRRG--V-ADPSRIAVGGHSYGAFMTAHLLAHA--PHLFCCGIARSGSYN 638 (706)
Q Consensus 583 ~~D~~~~~~~l~~~~--~-id~~~i~i~G~S~GG~~a~~~~~~~--p~~~~a~v~~~~~~d 638 (706)
+.|+..|++|+++.. + .||+||.|+|+|+||++++.++... ..+|+++|+.+|...
T Consensus 208 l~D~~~al~wv~~ni~~fggDp~~vti~G~SaGg~~v~~~~~~~~~~~lf~~ai~~Sg~~~ 268 (585)
T 1dx4_A 208 LWDQALAIRWLKDNAHAFGGNPEWMTLFGESAGSSSVNAQLMSPVTRGLVKRGMMQSGTMN 268 (585)
T ss_dssp HHHHHHHHHHHHHSTGGGTEEEEEEEEEEETHHHHHHHHHHHCTTTTTSCCEEEEESCCTT
T ss_pred HHHHHHHHHHHHHHHHHhCCCcceeEEeecchHHHHHHHHHhCCcccchhHhhhhhccccC
Confidence 889999999999862 2 6999999999999999998888763 368999999998653
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.8e-07 Score=94.96 Aligned_cols=246 Identities=9% Similarity=-0.018 Sum_probs=137.3
Q ss_pred CCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCC
Q 005240 19 GPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNS 98 (706)
Q Consensus 19 g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg 98 (706)
.+.++|.. .......|.|+|||+.|+|+.. ....|++++. +++.+.+...... +..+.|++||
T Consensus 35 ~~~~~l~~--~~~~~egp~~~~~g~~l~~~d~---------~~~~i~~~~~-~g~~~~~~~~~~~-----~~gl~~d~dG 97 (305)
T 3dr2_A 35 ARLLTLYD--QATWSEGPAWWEAQRTLVWSDL---------VGRRVLGWRE-DGTVDVLLDATAF-----TNGNAVDAQQ 97 (305)
T ss_dssp CCCEEEEC--CCSSEEEEEEEGGGTEEEEEET---------TTTEEEEEET-TSCEEEEEESCSC-----EEEEEECTTS
T ss_pred CceEEEec--CCcCccCCeEeCCCCEEEEEEC---------CCCEEEEEeC-CCCEEEEeCCCCc-----cceeeECCCC
Confidence 45555542 2234668999999999988752 3467888988 4555555433322 5678999999
Q ss_pred cEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCCCceecCCC----
Q 005240 99 TLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTP---- 174 (706)
Q Consensus 99 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g~~~~lt~~---- 174 (706)
+.+++.. ....|++++.+|+.+.+...
T Consensus 98 ~l~v~~~-------------------------------------------------~~~~v~~~~~~g~~~~~~~~~~~~ 128 (305)
T 3dr2_A 98 RLVHCEH-------------------------------------------------GRRAITRSDADGQAHLLVGRYAGK 128 (305)
T ss_dssp CEEEEET-------------------------------------------------TTTEEEEECTTSCEEEEECEETTE
T ss_pred CEEEEEC-------------------------------------------------CCCEEEEECCCCCEEEEEeccCCC
Confidence 9555431 11467778877765554322
Q ss_pred --ceEeeeeeCCCCcEEEEEeeccCc--ccc---cccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcce
Q 005240 175 --AVYTAVEPSPDQKYVLITSMHRPY--SYK---VPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSI 247 (706)
Q Consensus 175 --~~~~~~~~SpDG~~i~~~~~~~~~--~~~---~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~ 247 (706)
..+..++++|||+ |+|+...-.. .+. .........|++++.++++.+.+. .. ..+..+
T Consensus 129 ~~~~~~~i~~d~dG~-l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~-------------~~p~gl 193 (305)
T 3dr2_A 129 RLNSPNDLIVARDGA-IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DL-------------DHPNGL 193 (305)
T ss_dssp ECSCCCCEEECTTSC-EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EE-------------SSEEEE
T ss_pred ccCCCCCEEECCCCC-EEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cC-------------CCCcce
Confidence 2345789999996 5564311000 000 000011257899998777666654 11 112367
Q ss_pred eeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCce---EEee-cccccccceecCCCceEEEEeeccccc
Q 005240 248 SWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPE---ILHK-LDLRFRSVSWCDDSLALVNETWYKTSQ 323 (706)
Q Consensus 248 ~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~---~l~~-~~~~~~~~~wspDg~~l~~~~~~~~~~ 323 (706)
+|+|||+. ||+.. ..... .....|+++++ +++... .+.. .......+.+.++|. |++.. .
T Consensus 194 ~~spdg~~-lyv~~-~~~~~-----~~~~~i~~~~~---~~~~l~~~~~~~~~~~~~pdgi~~d~~G~-lwv~~-~---- 257 (305)
T 3dr2_A 194 AFSPDEQT-LYVSQ-TPEQG-----HGSVEITAFAW---RDGALHDRRHFASVPDGLPDGFCVDRGGW-LWSSS-G---- 257 (305)
T ss_dssp EECTTSSE-EEEEE-CCC--------CCCEEEEEEE---ETTEEEEEEEEECCSSSCCCSEEECTTSC-EEECC-S----
T ss_pred EEcCCCCE-EEEEe-cCCcC-----CCCCEEEEEEe---cCCCccCCeEEEECCCCCCCeEEECCCCC-EEEec-C----
Confidence 99999987 76653 21100 01135778777 332221 1111 133445678888888 44332 1
Q ss_pred eEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEee
Q 005240 324 TRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 324 ~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 371 (706)
..|++++.++. ....+ .... +...+.|++|++.|+++.
T Consensus 258 ~gv~~~~~~g~--~~~~~-~~~~-------~~~~~~f~~d~~~L~it~ 295 (305)
T 3dr2_A 258 TGVCVFDSDGQ--LLGHI-PTPG-------TASNCTFDQAQQRLFITG 295 (305)
T ss_dssp SEEEEECTTSC--EEEEE-ECSS-------CCCEEEECTTSCEEEEEE
T ss_pred CcEEEECCCCC--EEEEE-ECCC-------ceeEEEEeCCCCEEEEEc
Confidence 24999998652 22222 1110 122366788988888775
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.92 E-value=6.5e-08 Score=111.37 Aligned_cols=229 Identities=14% Similarity=0.098 Sum_probs=133.4
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecC--CcEEEEEecCCC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNN--STLLIFTIPSSR 109 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpD--g~~l~~~~~~~~ 109 (706)
.+..+.|||||++|+.... + ..|.++++.++....+.....+ ...+..+.|+|+ |+.|+..+.+
T Consensus 11 ~V~~l~~s~dg~~latg~~--------d--g~I~vwd~~~~~~~~~~~l~~h--~~~V~~l~~s~~~~~~~l~s~s~D-- 76 (753)
T 3jro_A 11 LIHDAVLDYYGKRLATCSS--------D--KTIKIFEVEGETHKLIDTLTGH--EGPVWRVDWAHPKFGTILASCSYD-- 76 (753)
T ss_dssp CEEEECCCSSSCCEEEEET--------T--TEEEEEEEETTEEEEEEEECCC--SSCEEEEEECCTTSCSEEEEEETT--
T ss_pred eeEEEEECCCCCeEEEEEC--------C--CcEEEEecCCCCCccceeccCC--cCceEEEEecCCCCCCEEEEEeCC--
Confidence 4888999999999987643 3 3555556554333222211111 113778999988 8888876421
Q ss_pred CCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCC---ceecCCC-ceEeeeeeCC
Q 005240 110 RDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT---AKDFGTP-AVYTAVEPSP 184 (706)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~---~~~lt~~-~~~~~~~~Sp 184 (706)
+.|.++++ +++ ...+... ..+..++|+|
T Consensus 77 -----------------------------------------------g~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp 109 (753)
T 3jro_A 77 -----------------------------------------------GKVLIWKEENGRWSQIAVHAVHSASVNSVQWAP 109 (753)
T ss_dssp -----------------------------------------------SCEEEEEEETTEEEEEEEECCCSSCEEEEEECC
T ss_pred -----------------------------------------------CeEEEEECCCCcccccccccCCCCCeEEEEECC
Confidence 56777787 443 2233333 6789999999
Q ss_pred C--CcEEEEEeeccCcccccccccccceEEEEecCCCee---EEcccCCCCCCCCcccCccCCCCcceeeec--------
Q 005240 185 D--QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV---RELCDLPPAEDIPVCYNSVREGMRSISWRA-------- 251 (706)
Q Consensus 185 D--G~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~l~~~~~~~~~p~~~~~~~~g~~~~~~sp-------- 251 (706)
+ |+.|+..+.. ..|.+|++..+.. ..+.... ..+..+.|+|
T Consensus 110 ~~~~~~l~sgs~d-------------g~I~vwdl~~~~~~~~~~~~~~~-------------~~v~~l~~~p~~~~~~~~ 163 (753)
T 3jro_A 110 HEYGPLLLVASSD-------------GKVSVVEFKENGTTSPIIIDAHA-------------IGVNSASWAPATIEEDGE 163 (753)
T ss_dssp GGGCSEEEEEETT-------------SEEEEEECCSSSCCCCEEEECCS-------------SCEEEEEECCCC------
T ss_pred CCCCCEEEEEeCC-------------CcEEEEEeecCCCcceeEeecCC-------------CceEEEEecCcccccccc
Confidence 9 8888766543 3799999985521 1221111 2244778888
Q ss_pred -----CCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCc-----eEEeecccccccceecCC---CceEEEEee
Q 005240 252 -----DKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP-----EILHKLDLRFRSVSWCDD---SLALVNETW 318 (706)
Q Consensus 252 -----dg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~-----~~l~~~~~~~~~~~wspD---g~~l~~~~~ 318 (706)
|++. |+... . .+.|.+||+ .++.. ..+..+...+..+.|+|+ ++.|+..+.
T Consensus 164 ~~~~~d~~~-l~sgs-~-----------dg~I~iwd~---~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~ 227 (753)
T 3jro_A 164 HNGTKESRK-FVTGG-A-----------DNLVKIWKY---NSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ 227 (753)
T ss_dssp ---CGGGCC-EEEEE-T-----------TSCEEEEEE---ETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEES
T ss_pred cccCCCCCE-EEEEE-C-----------CCeEEEEec---cCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEec
Confidence 4665 44331 1 124778877 33322 123345677889999999 787777652
Q ss_pred ccccceEEEEEcCCCCCCCce-eeecCcccccccCCCCCceEeccCCCEEEEee
Q 005240 319 YKTSQTRTWLVCPGSKDVAPR-VLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 319 ~~~~~~~l~~~d~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 371 (706)
++...|| |+.+++.... .+.... ........+.|+|+|++++...
T Consensus 228 --Dg~I~iw--d~~~~~~~~~~~~~~~~----~~~~~v~~l~~spdg~~l~s~s 273 (753)
T 3jro_A 228 --DRTCIIW--TQDNEQGPWKKTLLKEE----KFPDVLWRASWSLSGNVLALSG 273 (753)
T ss_dssp --SSCEEEE--EESSSSSCCBCCBSSSS----CCSSCCCCEEECTTTCCEEEEC
T ss_pred --CCEEEEe--cCCCCCCcceeEEeccC----CCCCceEEEEEcCCCCEEEEEc
Confidence 2344454 4444321111 111110 0011233578999999887764
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=98.91 E-value=3e-07 Score=94.45 Aligned_cols=233 Identities=12% Similarity=0.037 Sum_probs=136.8
Q ss_pred ceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccc
Q 005240 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (706)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 85 (706)
.|++.+++. ++.+++.. .....+..+.|+|||+.++..... ......|++++.++++.+.+......
T Consensus 67 ~i~~~d~~~----~~~~~~~~-~~~~~~~~i~~~~dg~l~v~~~~~------~~~~~~i~~~d~~~~~~~~~~~~~~~-- 133 (333)
T 2dg1_A 67 NIFKINPET----KEIKRPFV-SHKANPAAIKIHKDGRLFVCYLGD------FKSTGGIFAATENGDNLQDIIEDLST-- 133 (333)
T ss_dssp EEEEECTTT----CCEEEEEE-CSSSSEEEEEECTTSCEEEEECTT------SSSCCEEEEECTTSCSCEEEECSSSS--
T ss_pred EEEEEeCCC----CcEEEEee-CCCCCcceEEECCCCcEEEEeCCC------CCCCceEEEEeCCCCEEEEEEccCcc--
Confidence 466666654 77766642 223357789999999855443210 01235899999998877644221111
Q ss_pred cccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccC
Q 005240 86 NAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD 165 (706)
Q Consensus 86 ~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~ 165 (706)
...+..+.++|||+.+ +........ .....||+++.+
T Consensus 134 ~~~~~~i~~d~~g~l~-v~~~~~~~~------------------------------------------~~~~~l~~~~~~ 170 (333)
T 2dg1_A 134 AYCIDDMVFDSKGGFY-FTDFRGYST------------------------------------------NPLGGVYYVSPD 170 (333)
T ss_dssp CCCEEEEEECTTSCEE-EEECCCBTT------------------------------------------BCCEEEEEECTT
T ss_pred CCcccceEECCCCCEE-EEecccccc------------------------------------------CCCceEEEEeCC
Confidence 1125678999999754 432210000 012689999986
Q ss_pred C-CceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecC--CCeeEEcc-----cCCCCCCCCcc
Q 005240 166 G-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD--GKLVRELC-----DLPPAEDIPVC 236 (706)
Q Consensus 166 g-~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~l~-----~~~~~~~~p~~ 236 (706)
+ +.+.+... .....++|+|||+.|++..... ..|++|+++ +.....+. .....
T Consensus 171 ~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~------------~~i~~~d~~~~g~~~~~~~~~~~~~~~~~------ 232 (333)
T 2dg1_A 171 FRTVTPIIQNISVANGIALSTDEKVLWVTETTA------------NRLHRIALEDDGVTIQPFGATIPYYFTGH------ 232 (333)
T ss_dssp SCCEEEEEEEESSEEEEEECTTSSEEEEEEGGG------------TEEEEEEECTTSSSEEEEEEEEEEECCSS------
T ss_pred CCEEEEeecCCCcccceEECCCCCEEEEEeCCC------------CeEEEEEecCCCcCcccccceEEEecCCC------
Confidence 5 66665443 4567899999999998775432 478999985 33332211 11100
Q ss_pred cCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeeccc------ccccceecCCC
Q 005240 237 YNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDL------RFRSVSWCDDS 310 (706)
Q Consensus 237 ~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~------~~~~~~wspDg 310 (706)
..+..+.++++|+ |++.. .. ...|+++|. ++...+.+..... ....+.|+||+
T Consensus 233 -----~~~~~i~~d~~G~--l~v~~-~~----------~~~v~~~d~---~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg 291 (333)
T 2dg1_A 233 -----EGPDSCCIDSDDN--LYVAM-YG----------QGRVLVFNK---RGYPIGQILIPGRDEGHMLRSTHPQFIPGT 291 (333)
T ss_dssp -----SEEEEEEEBTTCC--EEEEE-ET----------TTEEEEECT---TSCEEEEEECTTGGGTCSCBCCEEEECTTS
T ss_pred -----CCCCceEECCCCC--EEEEE-cC----------CCEEEEECC---CCCEEEEEEcCCCccccccCcceEEECCCC
Confidence 1133678899986 54332 11 124778876 4443344432222 46788999999
Q ss_pred ceEEEEeecc--ccceEEEEEcCCC
Q 005240 311 LALVNETWYK--TSQTRTWLVCPGS 333 (706)
Q Consensus 311 ~~l~~~~~~~--~~~~~l~~~d~~~ 333 (706)
+.|++..... .....||.+++..
T Consensus 292 ~~L~v~~~~g~~~~~~~l~~~~~~~ 316 (333)
T 2dg1_A 292 NQLIICSNDIEMGGGSMLYTVNGFA 316 (333)
T ss_dssp CEEEEEEECGGGTCCEEEEEEECSS
T ss_pred CEEEEEeCccCCCCCceEEEEeccc
Confidence 8887765432 2345799998765
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=98.91 E-value=5.1e-07 Score=93.79 Aligned_cols=209 Identities=9% Similarity=-0.022 Sum_probs=123.3
Q ss_pred ceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccc
Q 005240 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (706)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 85 (706)
++.|+++++ ++........ .+....++++++.++.+.. +...|.++|..+++.........
T Consensus 41 ~~~iw~~~~----~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~---------~d~~v~iWd~~~~~~~~~~~~~~--- 101 (355)
T 3vu4_A 41 SFEIYNVHP----VAHIMSQEMR---HLSKVRMLHRTNYVAFVTG---------VKEVVHIWDDVKKQDVSRIKVDA--- 101 (355)
T ss_dssp EEEEEEETT----EEEEEEEECS---CCCEEEECTTSSEEEEECS---------STTEEEEEETTTTEEEEEEECSS---
T ss_pred EEEEEecCC----cceeeeeecC---CeEEEEEcCCCCEEEEEEC---------CccEEEEEECCCCcEEEEEECCC---
Confidence 456777755 4443333211 3667889999999988652 23588889998887654333332
Q ss_pred cccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccC
Q 005240 86 NAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD 165 (706)
Q Consensus 86 ~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~ 165 (706)
.+..+.|++++. +.... ..++++++.
T Consensus 102 --~v~~v~~~~~~~--~~~~~--------------------------------------------------~~i~i~d~~ 127 (355)
T 3vu4_A 102 --PVKDLFLSREFI--VVSYG--------------------------------------------------DVISVFKFG 127 (355)
T ss_dssp --CEEEEEECSSEE--EEEET--------------------------------------------------TEEEEEESS
T ss_pred --ceEEEEEcCCEE--EEEEc--------------------------------------------------CEEEEEECC
Confidence 266778887753 33221 467777884
Q ss_pred CCceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCe-----------------eEEcccC
Q 005240 166 GTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL-----------------VRELCDL 227 (706)
Q Consensus 166 g~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----------------~~~l~~~ 227 (706)
...+.+... ......+++| +.+++.+... ...|.+||+.++. .+.+..+
T Consensus 128 ~~~~~~~~~~~~~~~~~~s~--~~la~~sg~~-----------~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h 194 (355)
T 3vu4_A 128 NPWKRITDDIRFGGVCEFSN--GLLVYSNEFN-----------LGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAH 194 (355)
T ss_dssp TTCCBSSCCEEEEEEEEEET--TEEEEEESSC-----------TTCEEEEECCC------------------CCEEECCC
T ss_pred CCceeeEEeccCCceEEEEc--cEEEEeCCCc-----------CcEEEEEECCCCCccccccccccccccCcccEEEEcc
Confidence 322222211 2334556777 7787763222 2479999998654 2222222
Q ss_pred CCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccce-eeeecCCCCCCCCc-eEEe-e-ccccccc
Q 005240 228 PPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDI-IYTQPAEPAEGEKP-EILH-K-LDLRFRS 303 (706)
Q Consensus 228 ~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~-l~~~d~~~~~~~~~-~~l~-~-~~~~~~~ 303 (706)
. ..+..++|+|||+. |+-.. . ... |.+||+ .+++. ..+. . +...+..
T Consensus 195 ~-------------~~v~~~~~s~~g~~-l~s~s-~-----------d~~~v~iwd~---~~~~~~~~~~~g~h~~~v~~ 245 (355)
T 3vu4_A 195 T-------------NPIKMVRLNRKSDM-VATCS-Q-----------DGTIIRVFKT---EDGVLVREFRRGLDRADVVD 245 (355)
T ss_dssp S-------------SCEEEEEECTTSSE-EEEEE-T-----------TCSEEEEEET---TTCCEEEEEECTTCCSCEEE
T ss_pred C-------------CceEEEEECCCCCE-EEEEe-C-----------CCCEEEEEEC---CCCcEEEEEEcCCCCCcEEE
Confidence 1 22457899999986 54221 1 123 778888 55544 3444 2 5678899
Q ss_pred ceecCCCceEEEEeeccccceEEEEEcCCC
Q 005240 304 VSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (706)
Q Consensus 304 ~~wspDg~~l~~~~~~~~~~~~l~~~d~~~ 333 (706)
+.|+|||+.|+..+.+ +. |.++|+..
T Consensus 246 ~~~s~~~~~l~s~s~d--~~--v~iw~~~~ 271 (355)
T 3vu4_A 246 MKWSTDGSKLAVVSDK--WT--LHVFEIFN 271 (355)
T ss_dssp EEECTTSCEEEEEETT--CE--EEEEESSC
T ss_pred EEECCCCCEEEEEECC--CE--EEEEEccC
Confidence 9999999998876532 33 44445544
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=98.91 E-value=1e-06 Score=95.04 Aligned_cols=293 Identities=10% Similarity=0.047 Sum_probs=159.3
Q ss_pred cceeEeecCCCCCCCCeee-eecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCc
Q 005240 5 TGIGIHRLLPDDSLGPEKE-VHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~-i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~ 83 (706)
..|.++++.. ++... +.. ....+...+|+||+ .|+... ....|.++|+++++.........
T Consensus 142 g~i~vwd~~~----~~~~~~~~~--h~~~V~~l~~~~~~-~l~s~s----------~dg~i~vwd~~~~~~~~~~~~h~- 203 (464)
T 3v7d_B 142 KMIRVYDSIN----KKFLLQLSG--HDGGVWALKYAHGG-ILVSGS----------TDRTVRVWDIKKGCCTHVFEGHN- 203 (464)
T ss_dssp SCEEEEETTT----TEEEEEECC--CSSCEEEEEECSTT-EEEEEE----------TTSCEEEEETTTTEEEEEECCCS-
T ss_pred CcEEEEECCC----CcEEEEEeC--CCcCEEEEEEcCCC-EEEEEe----------CCCCEEEEECCCCcEEEEECCCC-
Confidence 3588888866 54333 222 22358899999999 554433 23567788988887655443221
Q ss_pred cccccccceEEe--cCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEE
Q 005240 84 CLNAVFGSFVWV--NNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (706)
Q Consensus 84 ~~~~~~~~~~wS--pDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~ 161 (706)
..+..+.|+ ++++.|+..+.+ +.|.+
T Consensus 204 ---~~v~~l~~~~~~~~~~l~s~s~d-------------------------------------------------~~i~v 231 (464)
T 3v7d_B 204 ---STVRCLDIVEYKNIKYIVTGSRD-------------------------------------------------NTLHV 231 (464)
T ss_dssp ---SCEEEEEEEESSSCEEEEEEETT-------------------------------------------------SCEEE
T ss_pred ---CccEEEEEecCCCCCEEEEEcCC-------------------------------------------------CcEEE
Confidence 126677887 577877766432 12223
Q ss_pred EccC-CC------------------------ceecCCCceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEec
Q 005240 162 GSLD-GT------------------------AKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTT 216 (706)
Q Consensus 162 ~~l~-g~------------------------~~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~ 216 (706)
+++. +. ...+... ......++|+++.|+..+.+ ..|.+||+
T Consensus 232 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~l~~~~~d-------------~~i~vwd~ 297 (464)
T 3v7d_B 232 WKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGH-MASVRTVSGHGNIVVSGSYD-------------NTLIVWDV 297 (464)
T ss_dssp EECCCCCCC------CCSSEEESCGGGCTTEEEEECCC-SSCEEEEEEETTEEEEEETT-------------SCEEEEET
T ss_pred eeCCCCcccccccccCCcceEeeccCCCeEEEEEccCc-cceEEEEcCCCCEEEEEeCC-------------CeEEEEEC
Confidence 3331 11 1111111 11123457899988766544 37999999
Q ss_pred CCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCc-eEEe
Q 005240 217 DGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP-EILH 295 (706)
Q Consensus 217 ~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~-~~l~ 295 (706)
.+++......... ..+..+.|+|+++. |+... . .+.|.+||+ .+++. ..+.
T Consensus 298 ~~~~~~~~~~~~~------------~~v~~~~~~~~~~~-l~sg~-~-----------dg~i~vwd~---~~~~~~~~~~ 349 (464)
T 3v7d_B 298 AQMKCLYILSGHT------------DRIYSTIYDHERKR-CISAS-M-----------DTTIRIWDL---ENGELMYTLQ 349 (464)
T ss_dssp TTTEEEEEECCCS------------SCEEEEEEETTTTE-EEEEE-T-----------TSCEEEEET---TTTEEEEEEC
T ss_pred CCCcEEEEecCCC------------CCEEEEEEcCCCCE-EEEEe-C-----------CCcEEEEEC---CCCcEEEEEe
Confidence 8665433222110 22457899999986 54321 1 124788888 44443 3344
Q ss_pred ecccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEeeeccC
Q 005240 296 KLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKEN 375 (706)
Q Consensus 296 ~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~ 375 (706)
.+...+..+.|+ +..|+..+. ...|.++|+.+.. ........ .......++++|+.++...+
T Consensus 350 ~h~~~v~~~~~~--~~~l~s~s~----dg~v~vwd~~~~~--~~~~~~~~-------~~~~~~~~~~~~~~l~~~~d--- 411 (464)
T 3v7d_B 350 GHTALVGLLRLS--DKFLVSAAA----DGSIRGWDANDYS--RKFSYHHT-------NLSAITTFYVSDNILVSGSE--- 411 (464)
T ss_dssp CCSSCEEEEEEC--SSEEEEEET----TSEEEEEETTTCC--EEEEEECT-------TCCCEEEEEECSSEEEEEET---
T ss_pred CCCCcEEEEEEc--CCEEEEEeC----CCcEEEEECCCCc--eeeeecCC-------CCccEEEEEeCCCEEEEecC---
Confidence 556677788887 456666542 2246677777642 22211111 11223567899998776541
Q ss_pred CcceEEEEecCCCCCCCCCCceeeeecCCCceeeeecccchhhhhhhhhhccCCCceecccCCCEEEEEEecCCCCcEEE
Q 005240 376 DEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYH 455 (706)
Q Consensus 376 ~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~p~~v~ 455 (706)
..+..+|+.+|+..+....... .....+.| +++.++.+..+. ....++
T Consensus 412 -------------------g~i~iwd~~~g~~~~~~~~~~~----------~~v~~v~~--~~~~l~~~~~~~-g~~~i~ 459 (464)
T 3v7d_B 412 -------------------NQFNIYNLRSGKLVHANILKDA----------DQIWSVNF--KGKTLVAAVEKD-GQSFLE 459 (464)
T ss_dssp -------------------TEEEEEETTTCCEEESCTTTTC----------SEEEEEEE--ETTEEEEEEEET-TEEEEE
T ss_pred -------------------CeEEEEECCCCcEEehhhccCC----------CcEEEEEe--cCCEEEEEEEeC-CeEEEE
Confidence 1366778888765432111110 11123445 466777665544 344455
Q ss_pred EEEC
Q 005240 456 ILSW 459 (706)
Q Consensus 456 ~~~~ 459 (706)
.+|+
T Consensus 460 ~ldf 463 (464)
T 3v7d_B 460 ILDF 463 (464)
T ss_dssp EEEC
T ss_pred Eeec
Confidence 5553
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=98.91 E-value=1.5e-07 Score=100.72 Aligned_cols=219 Identities=11% Similarity=0.214 Sum_probs=125.8
Q ss_pred ceeEeecCCC-------CCCCCeeeeecCCCCCcccceeeCCCCC-eEEEEeeccccccccCCceeEEEEEcCCCce---
Q 005240 6 GIGIHRLLPD-------DSLGPEKEVHGYPDGAKINFVSWSPDGK-RIAFSVRVDEEDNVSSCKLRVWIADAETGEA--- 74 (706)
Q Consensus 6 ~~~~~~~~~~-------~~~g~~~~i~~~~~~~~~~~~~~SPDG~-~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~--- 74 (706)
.|.|.++... +.......+.. ....+..+.|+|+++ .|+... ....|.++++..+..
T Consensus 152 ~V~vwd~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~l~~~~~~~~~l~s~~----------~dg~i~vwd~~~~~~~~~ 219 (430)
T 2xyi_A 152 DVLVFDYTKHPSKPEPSGECQPDLRLRG--HQKEGYGLSWNPNLNGYLLSAS----------DDHTICLWDINATPKEHR 219 (430)
T ss_dssp CEEEEEGGGSCSSCCTTCCCCCSEEEEC--CSSCCCCEEECTTSTTEEEEEC----------TTSCEEEEETTSCCBGGG
T ss_pred cEEEEECCCcccccCccccCCCcEEecC--CCCCeEEEEeCCCCCCeEEEEe----------CCCeEEEEeCCCCCCCCc
Confidence 5778888641 11233333332 223578999999999 555432 235677778766321
Q ss_pred -----eecccCCCccccccccceEEec-CCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhh
Q 005240 75 -----KPLFESPDICLNAVFGSFVWVN-NSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDE 148 (706)
Q Consensus 75 -----~~lt~~~~~~~~~~~~~~~wSp-Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 148 (706)
..+..+.. .+..+.|+| ++..|+....
T Consensus 220 ~~~~~~~~~~h~~-----~v~~v~~~p~~~~~l~s~~~------------------------------------------ 252 (430)
T 2xyi_A 220 VIDAKNIFTGHTA-----VVEDVAWHLLHESLFGSVAD------------------------------------------ 252 (430)
T ss_dssp EEECSEEECCCSS-----CEEEEEECSSCTTEEEEEET------------------------------------------
T ss_pred eeccceeecCCCC-----CEeeeEEeCCCCCEEEEEeC------------------------------------------
Confidence 12221222 277899999 4555554431
Q ss_pred hhhhhcccceEEEEcc-CC---C-ceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCC-C-e
Q 005240 149 SLFDYYTTAQLVLGSL-DG---T-AKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG-K-L 220 (706)
Q Consensus 149 ~~~~~~~~~~l~~~~l-~g---~-~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~-~ 220 (706)
.+.|.++++ ++ + ...+... ..+..++|+|++++++++.... ..|.+|++.. + .
T Consensus 253 -------dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~d------------g~v~vwd~~~~~~~ 313 (430)
T 2xyi_A 253 -------DQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSAD------------KTVALWDLRNLKLK 313 (430)
T ss_dssp -------TSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETT------------SEEEEEETTCTTSC
T ss_pred -------CCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCC------------CeEEEEeCCCCCCC
Confidence 157888888 33 1 2233233 6788999999999776665442 4799999985 2 2
Q ss_pred eEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCC----------
Q 005240 221 VRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEK---------- 290 (706)
Q Consensus 221 ~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~---------- 290 (706)
+..+..+. ..+..+.|+|+++. ++.....+ +.|.+||+. ..+.
T Consensus 314 ~~~~~~h~-------------~~v~~i~~sp~~~~-~l~s~~~d-----------~~i~iwd~~--~~~~~~~~~~~~~~ 366 (430)
T 2xyi_A 314 LHSFESHK-------------DEIFQVQWSPHNET-ILASSGTD-----------RRLHVWDLS--KIGEEQSTEDAEDG 366 (430)
T ss_dssp SEEEECCS-------------SCEEEEEECSSCTT-EEEEEETT-----------SCCEEEEGG--GTTCCCCHHHHHHC
T ss_pred eEEeecCC-------------CCEEEEEECCCCCC-EEEEEeCC-----------CcEEEEeCC--CCccccCccccccC
Confidence 33333221 22457899999987 44343222 136677762 1111
Q ss_pred -ceEEe---ecccccccceecCCCceEEEEeeccccceEEEEEc
Q 005240 291 -PEILH---KLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVC 330 (706)
Q Consensus 291 -~~~l~---~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d 330 (706)
++.+. .+...+..+.|+|++..++++... ++..+||.++
T Consensus 367 ~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~-dg~i~iw~~~ 409 (430)
T 2xyi_A 367 PPELLFIHGGHTAKISDFSWNPNEPWIICSVSE-DNIMQVWQMA 409 (430)
T ss_dssp CTTEEEECCCCSSCEEEEEECSSSTTEEEEEET-TSEEEEEEEC
T ss_pred CcceEEEcCCCCCCceEEEECCCCCCEEEEEEC-CCCEEEeEcc
Confidence 13332 335568899999999954444322 3455566654
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.91 E-value=7.4e-07 Score=93.88 Aligned_cols=237 Identities=14% Similarity=0.101 Sum_probs=132.3
Q ss_pred CcccceeeCC-CCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCC---cEEEEEec
Q 005240 31 AKINFVSWSP-DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNS---TLLIFTIP 106 (706)
Q Consensus 31 ~~~~~~~~SP-DG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg---~~l~~~~~ 106 (706)
..+..+.|+| +++.|+... ....|.++++.+++.......... +..+.|+|.+ ..|+....
T Consensus 100 ~~v~~~~~~~~~~~~l~s~~----------~d~~i~iwd~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 164 (408)
T 4a11_B 100 YSVETVQWYPHDTGMFTSSS----------FDKTLKVWDTNTLQTADVFNFEET-----VYSHHMSPVSTKHCLVAVGTR 164 (408)
T ss_dssp SCEEEEEECTTCTTCEEEEE----------TTSEEEEEETTTTEEEEEEECSSC-----EEEEEECSSCSSCCEEEEEES
T ss_pred CcEEEEEEccCCCcEEEEEe----------CCCeEEEeeCCCCccceeccCCCc-----eeeeEeecCCCCCcEEEEEcC
Confidence 3688899999 666666543 235788889988877665543332 5677888744 46666532
Q ss_pred CCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CC-CceecCCC-ceEeeeeeC
Q 005240 107 SSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTP-AVYTAVEPS 183 (706)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g-~~~~lt~~-~~~~~~~~S 183 (706)
.+.|.++++ ++ ....+... ..+..++|+
T Consensus 165 -------------------------------------------------~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~ 195 (408)
T 4a11_B 165 -------------------------------------------------GPKVQLCDLKSGSCSHILQGHRQEILAVSWS 195 (408)
T ss_dssp -------------------------------------------------SSSEEEEESSSSCCCEEECCCCSCEEEEEEC
T ss_pred -------------------------------------------------CCeEEEEeCCCcceeeeecCCCCcEEEEEEC
Confidence 156888888 45 44455544 678899999
Q ss_pred CCCcEEEEEeeccCcccccccccccceEEEEecCCCe--eEEcccCCCCCCCC--cccCccCCCCcceeeecCCCceEEE
Q 005240 184 PDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL--VRELCDLPPAEDIP--VCYNSVREGMRSISWRADKPSTLYW 259 (706)
Q Consensus 184 pDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~l~~~~~~~~~p--~~~~~~~~g~~~~~~spdg~~~l~~ 259 (706)
|++++++++.... ..|.+|++.... ...+.......... .........+..+.|+||++. |+.
T Consensus 196 ~~~~~ll~~~~~d------------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~ 262 (408)
T 4a11_B 196 PRYDYILATASAD------------SRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLH-LLT 262 (408)
T ss_dssp SSCTTEEEEEETT------------SCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSE-EEE
T ss_pred CCCCcEEEEEcCC------------CcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCE-EEE
Confidence 9999865555442 379999997442 23332211111000 000111122457899999986 553
Q ss_pred EEeccCCCCccccCccceeeeecCCCCCCCCceEEe-ec----ccccccceecC-CCceEEEEeeccccceEEEEEcCCC
Q 005240 260 VEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH-KL----DLRFRSVSWCD-DSLALVNETWYKTSQTRTWLVCPGS 333 (706)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~-~~----~~~~~~~~wsp-Dg~~l~~~~~~~~~~~~l~~~d~~~ 333 (706)
.. .+ +.|.+||+ .+++..... .. ........+.. .+..+++... ...|.++|+.+
T Consensus 263 ~~-~d-----------g~i~vwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~i~v~d~~~ 323 (408)
T 4a11_B 263 VG-TD-----------NRMRLWNS---SNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPY----GSTIAVYTVYS 323 (408)
T ss_dssp EE-TT-----------SCEEEEET---TTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEE----TTEEEEEETTT
T ss_pred ec-CC-----------CeEEEEEC---CCCccceeccccccccccccceeEEecCCCceEEEEec----CCEEEEEECcC
Confidence 32 11 24778887 444332211 11 11111222222 2444555432 23588888877
Q ss_pred CCCCceeeecCcccccccCCCCCceEeccCCCEEEEee
Q 005240 334 KDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 334 ~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 371 (706)
+ +....+...... ...+.|+|||++|+...
T Consensus 324 ~--~~~~~~~~~~~~------v~~~~~s~~~~~l~s~~ 353 (408)
T 4a11_B 324 G--EQITMLKGHYKT------VDCCVFQSNFQELYSGS 353 (408)
T ss_dssp C--CEEEEECCCSSC------EEEEEEETTTTEEEEEE
T ss_pred C--cceeeeccCCCe------EEEEEEcCCCCEEEEEC
Confidence 4 333333222111 22377899999887654
|
| >1tqh_A Carboxylesterase precursor; tetrahedral intermediate, alpha/beta hydrolase; 1.63A {Geobacillus stearothermophilus} SCOP: c.69.1.29 PDB: 1r1d_A* 4diu_A | Back alignment and structure |
|---|
Probab=98.91 E-value=1.1e-08 Score=100.55 Aligned_cols=80 Identities=16% Similarity=0.140 Sum_probs=58.1
Q ss_pred HHHHHHHCCeEEEEcCCCCcCCCCCCCCc--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCC
Q 005240 547 SSLIFLARRFAVLAGPSIPIIGEGDKLPN--DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAP 624 (706)
Q Consensus 547 ~~~~l~~~G~~v~~~~~~~~~g~g~~~~~--~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p 624 (706)
....|++.||.|+.++.+ |+|.+... ........+|+.++++++.+.+. +++.++||||||.+++.++.++|
T Consensus 35 ~~~~L~~~g~~vi~~D~~---GhG~s~~~~~~~~~~~~~~d~~~~~~~l~~~~~---~~~~lvG~SmGG~ia~~~a~~~p 108 (247)
T 1tqh_A 35 LGRFLESKGYTCHAPIYK---GHGVPPEELVHTGPDDWWQDVMNGYEFLKNKGY---EKIAVAGLSLGGVFSLKLGYTVP 108 (247)
T ss_dssp HHHHHHHTTCEEEECCCT---TSSSCHHHHTTCCHHHHHHHHHHHHHHHHHHTC---CCEEEEEETHHHHHHHHHHTTSC
T ss_pred HHHHHHHCCCEEEecccC---CCCCCHHHhcCCCHHHHHHHHHHHHHHHHHcCC---CeEEEEEeCHHHHHHHHHHHhCC
Confidence 456677899999996665 55643211 11244556778888888876542 58999999999999999999998
Q ss_pred CceeEEEecc
Q 005240 625 HLFCCGIARS 634 (706)
Q Consensus 625 ~~~~a~v~~~ 634 (706)
++++|+.+
T Consensus 109 --v~~lvl~~ 116 (247)
T 1tqh_A 109 --IEGIVTMC 116 (247)
T ss_dssp --CSCEEEES
T ss_pred --CCeEEEEc
Confidence 77777543
|
| >4fle_A Esterase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein, rossmann fold, HY; 2.10A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=98.90 E-value=2.8e-09 Score=101.14 Aligned_cols=143 Identities=13% Similarity=0.055 Sum_probs=83.6
Q ss_pred ceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHC--CeEEEEcCCCCcCCCCCCCCchhhHHHHHHHHHHHH
Q 005240 513 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLAR--RFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAV 590 (706)
Q Consensus 513 ~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~ 590 (706)
.|+|||+||=. +++.++. ...+.+.+.++ +|.|++++.. |+| +...++ +
T Consensus 2 mptIl~lHGf~-----------ss~~s~k--~~~l~~~~~~~~~~~~v~~pdl~---~~g---------~~~~~~----l 52 (202)
T 4fle_A 2 MSTLLYIHGFN-----------SSPSSAK--ATTFKSWLQQHHPHIEMQIPQLP---PYP---------AEAAEM----L 52 (202)
T ss_dssp -CEEEEECCTT-----------CCTTCHH--HHHHHHHHHHHCTTSEEECCCCC---SSH---------HHHHHH----H
T ss_pred CcEEEEeCCCC-----------CCCCccH--HHHHHHHHHHcCCCcEEEEeCCC---CCH---------HHHHHH----H
Confidence 38999999921 1111110 11223445554 5899986653 332 222222 3
Q ss_pred HHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCCCCC----------C------------------
Q 005240 591 EEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTL----------T------------------ 642 (706)
Q Consensus 591 ~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d~~~----------~------------------ 642 (706)
+.+.++ .++++|+|+|+||||++|++++.++|....+++...+..+... .
T Consensus 53 ~~~~~~--~~~~~i~l~G~SmGG~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (202)
T 4fle_A 53 ESIVMD--KAGQSIGIVGSSLGGYFATWLSQRFSIPAVVVNPAVRPFELLSDYLGENQNPYTGQKYVLESRHIYDLKAMQ 130 (202)
T ss_dssp HHHHHH--HTTSCEEEEEETHHHHHHHHHHHHTTCCEEEESCCSSHHHHGGGGCEEEECTTTCCEEEECHHHHHHHHTTC
T ss_pred HHHHHh--cCCCcEEEEEEChhhHHHHHHHHHhcccchheeeccchHHHHHHhhhhhccccccccccchHHHHHHHHhhh
Confidence 333332 2457999999999999999999999888777766654321100 0
Q ss_pred --------Ccc---------chHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 005240 643 --------PFG---------FQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQK 693 (706)
Q Consensus 643 --------~~~---------~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~~~ 693 (706)
|.. ... +...++- .+++++++||++|.+... .+.++.|.+||+-
T Consensus 131 ~~~~~~~~P~LiihG~~D~~Vp~-~~s~~l~---~~~~l~i~~g~~H~~~~~---~~~~~~I~~FL~~ 191 (202)
T 4fle_A 131 IEKLESPDLLWLLQQTGDEVLDY-RQAVAYY---TPCRQTVESGGNHAFVGF---DHYFSPIVTFLGL 191 (202)
T ss_dssp CSSCSCGGGEEEEEETTCSSSCH-HHHHHHT---TTSEEEEESSCCTTCTTG---GGGHHHHHHHHTC
T ss_pred hhhhccCceEEEEEeCCCCCCCH-HHHHHHh---hCCEEEEECCCCcCCCCH---HHHHHHHHHHHhh
Confidence 000 000 3333332 256899999999998643 3467888888864
|
| >3p2m_A Possible hydrolase; alpha/beta hydrolase superfamily; 2.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.8e-08 Score=103.71 Aligned_cols=109 Identities=17% Similarity=0.104 Sum_probs=74.6
Q ss_pred CeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCC
Q 005240 492 GVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGD 571 (706)
Q Consensus 492 g~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~ 571 (706)
+..+....+-+. .|+||++||.+.. ...+...+...||.|+..+.+ |+|.
T Consensus 69 ~~~~~~~~~g~~---------~~~vv~~hG~~~~------------------~~~~~~~~~~lg~~Vi~~D~~---G~G~ 118 (330)
T 3p2m_A 69 AGAISALRWGGS---------APRVIFLHGGGQN------------------AHTWDTVIVGLGEPALAVDLP---GHGH 118 (330)
T ss_dssp ETTEEEEEESSS---------CCSEEEECCTTCC------------------GGGGHHHHHHSCCCEEEECCT---TSTT
T ss_pred CceEEEEEeCCC---------CCeEEEECCCCCc------------------cchHHHHHHHcCCeEEEEcCC---CCCC
Confidence 335666665332 2678899996421 012334445579999996665 4454
Q ss_pred CCC---chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCC
Q 005240 572 KLP---NDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 636 (706)
Q Consensus 572 ~~~---~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~ 636 (706)
+.. .........+|+.++++.+ +.+++.++|||+||++++.++.++|++++++|+.++.
T Consensus 119 S~~~~~~~~~~~~~a~dl~~~l~~l------~~~~v~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~ 180 (330)
T 3p2m_A 119 SAWREDGNYSPQLNSETLAPVLREL------APGAEFVVGMSLGGLTAIRLAAMAPDLVGELVLVDVT 180 (330)
T ss_dssp SCCCSSCBCCHHHHHHHHHHHHHHS------STTCCEEEEETHHHHHHHHHHHHCTTTCSEEEEESCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHh------CCCCcEEEEECHhHHHHHHHHHhChhhcceEEEEcCC
Confidence 432 1223455666776666654 3568999999999999999999999999999999864
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.89 E-value=5e-07 Score=89.66 Aligned_cols=193 Identities=16% Similarity=0.093 Sum_probs=121.6
Q ss_pred CCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCC-ccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCC
Q 005240 42 GKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD-ICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPL 120 (706)
Q Consensus 42 G~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~-~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~ 120 (706)
|.+|+|+.. ..|++++++++..+.+...+. ..-...+..++|+|+++.|++.-.
T Consensus 1 ~~~l~~~~~-----------~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~-------------- 55 (267)
T 1npe_A 1 GTHLLFAQT-----------GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDI-------------- 55 (267)
T ss_dssp CEEEEEEEE-----------EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEET--------------
T ss_pred CcEEEEEcC-----------CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEEC--------------
Confidence 567777542 579999998876442210000 000012457899998888887631
Q ss_pred CCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCC-CceecC-CC-ceEeeeeeCCCCcEEEEEeeccC
Q 005240 121 GPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TAKDFG-TP-AVYTAVEPSPDQKYVLITSMHRP 197 (706)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g-~~~~lt-~~-~~~~~~~~SpDG~~i~~~~~~~~ 197 (706)
....|++++++| ..+.+. .. .....++++|+++.|+++...
T Consensus 56 ----------------------------------~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~-- 99 (267)
T 1npe_A 56 ----------------------------------SEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQ-- 99 (267)
T ss_dssp ----------------------------------TTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETT--
T ss_pred ----------------------------------CCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECC--
Confidence 126799999976 444333 23 567889999999999877644
Q ss_pred cccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccce
Q 005240 198 YSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDI 277 (706)
Q Consensus 198 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~ 277 (706)
...|.++++++...+.+..... ..+..++++|++.. ||+..... ....
T Consensus 100 ----------~~~I~~~~~~g~~~~~~~~~~~------------~~P~~i~vd~~~g~-lyv~~~~~---------~~~~ 147 (267)
T 1npe_A 100 ----------LDRIEVAKMDGTQRRVLFDTGL------------VNPRGIVTDPVRGN-LYWTDWNR---------DNPK 147 (267)
T ss_dssp ----------TTEEEEEETTSCSCEEEECSSC------------SSEEEEEEETTTTE-EEEEECCS---------SSCE
T ss_pred ----------CCEEEEEEcCCCCEEEEEECCC------------CCccEEEEeeCCCE-EEEEECCC---------CCcE
Confidence 2479999998765555432211 12447899998776 77763210 1235
Q ss_pred eeeecCCCCCCCCceEEeec-ccccccceecCCCceEEEEeeccccceEEEEEcCCC
Q 005240 278 IYTQPAEPAEGEKPEILHKL-DLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (706)
Q Consensus 278 l~~~d~~~~~~~~~~~l~~~-~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~ 333 (706)
|++++. ++...+.+... -.....++|++|+..|+++.. ...+|+++++++
T Consensus 148 I~~~~~---dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~---~~~~I~~~~~~g 198 (267)
T 1npe_A 148 IETSHM---DGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDA---GTHRAECLNPAQ 198 (267)
T ss_dssp EEEEET---TSCCCEEEECTTCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTE
T ss_pred EEEEec---CCCCcEEEEECCCCCCcEEEEcCCCCEEEEEEC---CCCEEEEEecCC
Confidence 777777 55555555422 234567889999988887642 345799999987
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.88 E-value=1.9e-07 Score=95.77 Aligned_cols=212 Identities=11% Similarity=0.035 Sum_probs=125.8
Q ss_pred ceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccc
Q 005240 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (706)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 85 (706)
.|+..+.+. ++.+.+. ++ ..+..+.|+|||+.++... ..|++++.++++.+++........
T Consensus 72 ~i~~~d~~~----~~~~~~~-~~--~~v~~i~~~~dg~l~v~~~------------~gl~~~d~~~g~~~~~~~~~~~~~ 132 (326)
T 2ghs_A 72 ELHELHLAS----GRKTVHA-LP--FMGSALAKISDSKQLIASD------------DGLFLRDTATGVLTLHAELESDLP 132 (326)
T ss_dssp EEEEEETTT----TEEEEEE-CS--SCEEEEEEEETTEEEEEET------------TEEEEEETTTCCEEEEECSSTTCT
T ss_pred EEEEEECCC----CcEEEEE-CC--CcceEEEEeCCCeEEEEEC------------CCEEEEECCCCcEEEEeeCCCCCC
Confidence 456666644 6655554 33 3477889999998766531 259999999998877653321100
Q ss_pred cccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccC
Q 005240 86 NAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD 165 (706)
Q Consensus 86 ~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~ 165 (706)
...+..+.++|||+. ++........ .....||+++ +
T Consensus 133 ~~~~~~i~~d~~G~l-~v~~~~~~~~------------------------------------------~~~~~l~~~~-~ 168 (326)
T 2ghs_A 133 GNRSNDGRMHPSGAL-WIGTMGRKAE------------------------------------------TGAGSIYHVA-K 168 (326)
T ss_dssp TEEEEEEEECTTSCE-EEEEEETTCC------------------------------------------TTCEEEEEEE-T
T ss_pred CCCCCCEEECCCCCE-EEEeCCCcCC------------------------------------------CCceEEEEEe-C
Confidence 112567889999984 4443210000 0226899999 7
Q ss_pred CCceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecC--CC-ee---EEcccCCCCCCCCcccC
Q 005240 166 GTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD--GK-LV---RELCDLPPAEDIPVCYN 238 (706)
Q Consensus 166 g~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~-~~---~~l~~~~~~~~~p~~~~ 238 (706)
|+.+.+... .....++|||||+.|++.... ...|++++++ ++ .. +.+.......
T Consensus 169 g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~------------~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~------- 229 (326)
T 2ghs_A 169 GKVTKLFADISIPNSICFSPDGTTGYFVDTK------------VNRLMRVPLDARTGLPTGKAEVFIDSTGIK------- 229 (326)
T ss_dssp TEEEEEEEEESSEEEEEECTTSCEEEEEETT------------TCEEEEEEBCTTTCCBSSCCEEEEECTTSS-------
T ss_pred CcEEEeeCCCcccCCeEEcCCCCEEEEEECC------------CCEEEEEEcccccCCcccCceEEEECCCCC-------
Confidence 766655443 455689999999999887543 2479999986 43 21 2222211111
Q ss_pred ccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceec-CCCceEEEEe
Q 005240 239 SVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWC-DDSLALVNET 317 (706)
Q Consensus 239 ~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~ws-pDg~~l~~~~ 317 (706)
..+..+.+.++|. |++.. .. ...|++++. ++...+.+......+..++|+ +|++.|++.+
T Consensus 230 ---~~p~gi~~d~~G~--lwva~-~~----------~~~v~~~d~---~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~ 290 (326)
T 2ghs_A 230 ---GGMDGSVCDAEGH--IWNAR-WG----------EGAVDRYDT---DGNHIARYEVPGKQTTCPAFIGPDASRLLVTS 290 (326)
T ss_dssp ---SEEEEEEECTTSC--EEEEE-ET----------TTEEEEECT---TCCEEEEEECSCSBEEEEEEESTTSCEEEEEE
T ss_pred ---CCCCeeEECCCCC--EEEEE-eC----------CCEEEEECC---CCCEEEEEECCCCCcEEEEEecCCCCEEEEEe
Confidence 1123567888885 54332 11 124778776 443334444334457788898 8888887765
Q ss_pred e
Q 005240 318 W 318 (706)
Q Consensus 318 ~ 318 (706)
.
T Consensus 291 ~ 291 (326)
T 2ghs_A 291 A 291 (326)
T ss_dssp B
T ss_pred c
Confidence 3
|
| >1zoi_A Esterase; alpha/beta hydrolase fold; 1.60A {Pseudomonas putida} PDB: 4dgq_A | Back alignment and structure |
|---|
Probab=98.88 E-value=2.2e-08 Score=99.93 Aligned_cols=118 Identities=18% Similarity=0.222 Sum_probs=82.9
Q ss_pred EEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCc
Q 005240 487 YQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPI 566 (706)
Q Consensus 487 ~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~ 566 (706)
+...||..|....+-|++ -|.||++||.+.. ...| ...+..|++.||.|++.+.+
T Consensus 4 ~~~~~g~~l~y~~~g~~~--------~~~vvllHG~~~~-----------~~~w----~~~~~~L~~~g~~vi~~D~~-- 58 (276)
T 1zoi_A 4 VTTKDGVQIFYKDWGPRD--------APVIHFHHGWPLS-----------ADDW----DAQLLFFLAHGYRVVAHDRR-- 58 (276)
T ss_dssp EECTTSCEEEEEEESCTT--------SCEEEEECCTTCC-----------GGGG----HHHHHHHHHTTCEEEEECCT--
T ss_pred EECCCCcEEEEEecCCCC--------CCeEEEECCCCcc-----------hhHH----HHHHHHHHhCCCEEEEecCC--
Confidence 455688888877665432 2568889996421 0111 13456788899999996665
Q ss_pred CCCCCCCCc--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhC-CCceeEEEeccCC
Q 005240 567 IGEGDKLPN--DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHA-PHLFCCGIARSGS 636 (706)
Q Consensus 567 ~g~g~~~~~--~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~-p~~~~a~v~~~~~ 636 (706)
|+|.+... ....+...+|+.++++.+ +.+++.++||||||.+++.++.++ |++++++|+.++.
T Consensus 59 -G~G~S~~~~~~~~~~~~~~d~~~~l~~l------~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~ 124 (276)
T 1zoi_A 59 -GHGRSSQVWDGHDMDHYADDVAAVVAHL------GIQGAVHVGHSTGGGEVVRYMARHPEDKVAKAVLIAAV 124 (276)
T ss_dssp -TSTTSCCCSSCCSHHHHHHHHHHHHHHH------TCTTCEEEEETHHHHHHHHHHHHCTTSCCCCEEEESCC
T ss_pred -CCCCCCCCCCCCCHHHHHHHHHHHHHHh------CCCceEEEEECccHHHHHHHHHHhCHHheeeeEEecCC
Confidence 55655432 224566778888887776 236899999999999999988776 9999999988753
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.88 E-value=5e-08 Score=114.27 Aligned_cols=202 Identities=12% Similarity=0.078 Sum_probs=124.6
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~ 111 (706)
.+..++|||||++||.... + ..|.+++..+++......+.. .+..+.|+| |++|+..+.
T Consensus 19 ~V~~lafspdg~~lAsgs~--------D--g~I~lw~~~~~~~~~~~~~~~-----~V~~l~fsp-g~~L~S~s~----- 77 (902)
T 2oaj_A 19 KPIAAAFDFTQNLLAIATV--------T--GEVHIYGQQQVEVVIKLEDRS-----AIKEMRFVK-GIYLVVINA----- 77 (902)
T ss_dssp CEEEEEEETTTTEEEEEET--------T--SEEEEECSTTCEEEEECSSCC-----CEEEEEEET-TTEEEEEET-----
T ss_pred CcEEEEECCCCCEEEEEeC--------C--CEEEEEeCCCcEEEEEcCCCC-----CEEEEEEcC-CCEEEEEEC-----
Confidence 4889999999999988653 2 467777887766544332222 378999999 887776542
Q ss_pred CCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCC-ceecCCCceEeeeeeCCCCcEE
Q 005240 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGTPAVYTAVEPSPDQKYV 189 (706)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~-~~~lt~~~~~~~~~~SpDG~~i 189 (706)
.+.|.++|+ +++ ...+.....+..++|+|||++|
T Consensus 78 --------------------------------------------D~~v~lWd~~~~~~~~~~~~~~~V~~v~~sp~g~~l 113 (902)
T 2oaj_A 78 --------------------------------------------KDTVYVLSLYSQKVLTTVFVPGKITSIDTDASLDWM 113 (902)
T ss_dssp --------------------------------------------TCEEEEEETTTCSEEEEEECSSCEEEEECCTTCSEE
T ss_pred --------------------------------------------cCeEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEE
Confidence 156788888 453 3344333678899999999999
Q ss_pred EEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCC--CCCcccCccCCCCcceeeecCCCceEEEEEeccCCC
Q 005240 190 LITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAE--DIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGD 267 (706)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~--~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~ 267 (706)
+..... ..|.+||+.+++........... ..+ ......+..++|+|++...|+ +..
T Consensus 114 ~sgs~d-------------g~V~lwd~~~~~~~~~~i~~~~~~~~~~---~~h~~~V~sl~~sp~~~~~l~-~g~----- 171 (902)
T 2oaj_A 114 LIGLQN-------------GSMIVYDIDRDQLSSFKLDNLQKSSFFP---AARLSPIVSIQWNPRDIGTVL-ISY----- 171 (902)
T ss_dssp EEEETT-------------SCEEEEETTTTEEEEEEECCHHHHHTCS---SSCCCCCCEEEEETTEEEEEE-EEC-----
T ss_pred EEEcCC-------------CcEEEEECCCCccccceecccccccccc---ccCCCCeEEEEEccCCCCEEE-EEe-----
Confidence 876543 37999999977653221100000 000 000123558899997654243 321
Q ss_pred CccccCccceeeeecCCCCCCCCceE-Eeec------------------ccccccceecCCCceEEEEeeccccceEEEE
Q 005240 268 ANVEVSPRDIIYTQPAEPAEGEKPEI-LHKL------------------DLRFRSVSWCDDSLALVNETWYKTSQTRTWL 328 (706)
Q Consensus 268 ~~~~~~~~~~l~~~d~~~~~~~~~~~-l~~~------------------~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~ 328 (706)
..+.+ +||+ .+++... +... ...+..+.|+|||+.|+..+.+ + .|.+
T Consensus 172 ------~dg~v-lWd~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~D--g--~i~l 237 (902)
T 2oaj_A 172 ------EYVTL-TYSL---VENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHED--N--SLVF 237 (902)
T ss_dssp ------SSCEE-EEET---TTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETT--C--CEEE
T ss_pred ------CCCcE-EEEC---CCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECC--C--eEEE
Confidence 11247 8888 4444332 2211 2457889999999988876532 2 3666
Q ss_pred EcCCCC
Q 005240 329 VCPGSK 334 (706)
Q Consensus 329 ~d~~~~ 334 (706)
+|+.++
T Consensus 238 Wd~~~g 243 (902)
T 2oaj_A 238 WDANSG 243 (902)
T ss_dssp EETTTC
T ss_pred EECCCC
Confidence 677663
|
| >3v48_A Aminohydrolase, putative aminoacrylate hydrolase RUTD; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.10A {Escherichia coli SE11} | Back alignment and structure |
|---|
Probab=98.88 E-value=3e-08 Score=98.61 Aligned_cols=99 Identities=17% Similarity=0.205 Sum_probs=67.4
Q ss_pred ceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCCCCc---hhhHHHHHHHHHHH
Q 005240 513 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPN---DRFVEQLVSSAEAA 589 (706)
Q Consensus 513 ~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~---~~~~~~~~~D~~~~ 589 (706)
-|.||++||.+.. ...| ......| +.+|.|+..+.+ |+|.+... ........+|+.+.
T Consensus 15 ~~~vvllHG~~~~-----------~~~w----~~~~~~L-~~~~~vi~~Dl~---G~G~S~~~~~~~~~~~~~a~dl~~~ 75 (268)
T 3v48_A 15 APVVVLISGLGGS-----------GSYW----LPQLAVL-EQEYQVVCYDQR---GTGNNPDTLAEDYSIAQMAAELHQA 75 (268)
T ss_dssp CCEEEEECCTTCC-----------GGGG----HHHHHHH-HTTSEEEECCCT---TBTTBCCCCCTTCCHHHHHHHHHHH
T ss_pred CCEEEEeCCCCcc-----------HHHH----HHHHHHH-hhcCeEEEECCC---CCCCCCCCccccCCHHHHHHHHHHH
Confidence 3678899995321 1111 1223334 567999996665 55655332 22355666777666
Q ss_pred HHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCC
Q 005240 590 VEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 636 (706)
Q Consensus 590 ~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~ 636 (706)
++.+ +.+++.++||||||.+++.++.++|++++++|+.++.
T Consensus 76 l~~l------~~~~~~lvGhS~GG~ia~~~A~~~p~~v~~lvl~~~~ 116 (268)
T 3v48_A 76 LVAA------GIEHYAVVGHALGALVGMQLALDYPASVTVLISVNGW 116 (268)
T ss_dssp HHHT------TCCSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCC
T ss_pred HHHc------CCCCeEEEEecHHHHHHHHHHHhChhhceEEEEeccc
Confidence 5543 2368999999999999999999999999999988764
|
| >1q0r_A RDMC, aclacinomycin methylesterase; anthracycline, hydrolase, polyketide, tailoring enzyme, structural proteomics in europe, spine; HET: AKT 1PE; 1.45A {Streptomyces purpurascens} SCOP: c.69.1.28 PDB: 1q0z_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=1.9e-08 Score=101.84 Aligned_cols=117 Identities=15% Similarity=0.081 Sum_probs=81.8
Q ss_pred cCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCC
Q 005240 490 KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGE 569 (706)
Q Consensus 490 ~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~ 569 (706)
.||..++...+-|++ -|.||++||.+.. ...| ....+..|++.||.|+..+.+ |+
T Consensus 8 ~~g~~l~y~~~G~~~--------~~~vvllHG~~~~-----------~~~w---~~~~~~~L~~~G~~vi~~D~r---G~ 62 (298)
T 1q0r_A 8 SGDVELWSDDFGDPA--------DPALLLVMGGNLS-----------ALGW---PDEFARRLADGGLHVIRYDHR---DT 62 (298)
T ss_dssp ETTEEEEEEEESCTT--------SCEEEEECCTTCC-----------GGGS---CHHHHHHHHTTTCEEEEECCT---TS
T ss_pred cCCeEEEEEeccCCC--------CCeEEEEcCCCCC-----------ccch---HHHHHHHHHhCCCEEEeeCCC---CC
Confidence 478888877664421 2568889996421 1111 112346788899999996655 55
Q ss_pred CCCCC---c--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCC
Q 005240 570 GDKLP---N--DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSY 637 (706)
Q Consensus 570 g~~~~---~--~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~ 637 (706)
|.+.. . ....+...+|+.+.++++ +.+++.++||||||.+++.++.++|++++++|+.++..
T Consensus 63 G~S~~~~~~~~~~~~~~~a~dl~~~l~~l------~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 129 (298)
T 1q0r_A 63 GRSTTRDFAAHPYGFGELAADAVAVLDGW------GVDRAHVVGLSMGATITQVIALDHHDRLSSLTMLLGGG 129 (298)
T ss_dssp TTSCCCCTTTSCCCHHHHHHHHHHHHHHT------TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCC
T ss_pred CCCCCCCCCcCCcCHHHHHHHHHHHHHHh------CCCceEEEEeCcHHHHHHHHHHhCchhhheeEEecccC
Confidence 55543 1 123566777888877765 34689999999999999999999999999999877643
|
| >1thg_A Lipase; hydrolase(carboxylic esterase); HET: NAG NDG; 1.80A {Galactomyces geotrichum} SCOP: c.69.1.17 | Back alignment and structure |
|---|
Probab=98.87 E-value=2.1e-09 Score=117.64 Aligned_cols=134 Identities=19% Similarity=0.253 Sum_probs=88.9
Q ss_pred ccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHH-HHHH-HCCeEEEEcCCCCc
Q 005240 489 RKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSS-LIFL-ARRFAVLAGPSIPI 566 (706)
Q Consensus 489 ~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~-~~G~~v~~~~~~~~ 566 (706)
+.|+..+ .+|+|....++ .++|+||++|||++..++. ..+. ...++ +.++ ..|++|+..+||..
T Consensus 102 sedcl~l--~v~~P~~~~~~--~~~Pviv~iHGGg~~~g~~--------~~~~--~~~l~~~~l~~~~~~vvv~~nYRl~ 167 (544)
T 1thg_A 102 NEDCLYL--NVFRPAGTKPD--AKLPVMVWIYGGAFVYGSS--------AAYP--GNSYVKESINMGQPVVFVSINYRTG 167 (544)
T ss_dssp CSCCCEE--EEEEETTCCTT--CCEEEEEEECCCTTCCSGG--------GGCC--SHHHHHHHHHTTCCCEEEEECCCCH
T ss_pred CCCCeEE--EEEeCCCCCCC--CCCcEEEEECCCccccCCc--------cccC--chHHHHHHhhcCCCEEEEeCCCCCC
Confidence 4566444 57889764332 2589999999998754332 1111 11122 2233 26899999898854
Q ss_pred C-CCCCCCC--chhhHHHHHHHHHHHHHHHHHc--CC-CCCCcEEEEEechHHHHHHHHHHhC--------CCceeEEEe
Q 005240 567 I-GEGDKLP--NDRFVEQLVSSAEAAVEEVVRR--GV-ADPSRIAVGGHSYGAFMTAHLLAHA--------PHLFCCGIA 632 (706)
Q Consensus 567 ~-g~g~~~~--~~~~~~~~~~D~~~~~~~l~~~--~~-id~~~i~i~G~S~GG~~a~~~~~~~--------p~~~~a~v~ 632 (706)
. |+..... ....++..+.|+.+|++|++++ .+ .|++||.|+|+|+||++++.++... ..+|+++|+
T Consensus 168 ~~gf~~~~~~~~~~~~n~gl~D~~~Al~wv~~ni~~fggDp~~Vti~G~SaGg~~~~~~~~~~~~~~~~~~~~lf~~~i~ 247 (544)
T 1thg_A 168 PFGFLGGDAITAEGNTNAGLHDQRKGLEWVSDNIANFGGDPDKVMIFGESAGAMSVAHQLIAYGGDNTYNGKKLFHSAIL 247 (544)
T ss_dssp HHHHCCSHHHHHHTCTTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGTCCEETTEESCSEEEE
T ss_pred cccCCCcccccccCCCchhHHHHHHHHHHHHHHHHHhCCChhHeEEEEECHHHHHHHHHHhCCCccccccccccccceEE
Confidence 3 2211000 0112345689999999999885 22 7999999999999999999888752 468999999
Q ss_pred ccCC
Q 005240 633 RSGS 636 (706)
Q Consensus 633 ~~~~ 636 (706)
.+|.
T Consensus 248 ~Sg~ 251 (544)
T 1thg_A 248 QSGG 251 (544)
T ss_dssp ESCC
T ss_pred eccc
Confidence 9984
|
| >1a88_A Chloroperoxidase L; haloperoxidase, oxidoreductase; 1.90A {Streptomyces lividans} SCOP: c.69.1.12 | Back alignment and structure |
|---|
Probab=98.86 E-value=3.8e-08 Score=98.08 Aligned_cols=118 Identities=19% Similarity=0.191 Sum_probs=82.0
Q ss_pred EEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCc
Q 005240 487 YQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPI 566 (706)
Q Consensus 487 ~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~ 566 (706)
+...||..+....+-|++ -|.||++||.+.. ...| ...+..|++.||.|+..+.+
T Consensus 3 ~~~~~g~~l~y~~~g~~~--------~~~vvllHG~~~~-----------~~~w----~~~~~~l~~~g~~vi~~D~~-- 57 (275)
T 1a88_A 3 VTTSDGTNIFYKDWGPRD--------GLPVVFHHGWPLS-----------ADDW----DNQMLFFLSHGYRVIAHDRR-- 57 (275)
T ss_dssp EECTTSCEEEEEEESCTT--------SCEEEEECCTTCC-----------GGGG----HHHHHHHHHTTCEEEEECCT--
T ss_pred EEccCCCEEEEEEcCCCC--------CceEEEECCCCCc-----------hhhH----HHHHHHHHHCCceEEEEcCC--
Confidence 456688888876664432 2568889996421 0111 13456788899999996665
Q ss_pred CCCCCCCCc--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhC-CCceeEEEeccCC
Q 005240 567 IGEGDKLPN--DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHA-PHLFCCGIARSGS 636 (706)
Q Consensus 567 ~g~g~~~~~--~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~-p~~~~a~v~~~~~ 636 (706)
|+|.+... ....+...+|+.++++.+ +.+++.++||||||.+++.++.++ |++++++|..++.
T Consensus 58 -G~G~S~~~~~~~~~~~~~~dl~~~l~~l------~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~ 123 (275)
T 1a88_A 58 -GHGRSDQPSTGHDMDTYAADVAALTEAL------DLRGAVHIGHSTGGGEVARYVARAEPGRVAKAVLVSAV 123 (275)
T ss_dssp -TSTTSCCCSSCCSHHHHHHHHHHHHHHH------TCCSEEEEEETHHHHHHHHHHHHSCTTSEEEEEEESCC
T ss_pred -cCCCCCCCCCCCCHHHHHHHHHHHHHHc------CCCceEEEEeccchHHHHHHHHHhCchheEEEEEecCC
Confidence 55555332 224566778888877766 235899999999999999877776 9999999988753
|
| >2pl5_A Homoserine O-acetyltransferase; alpha/beta hydrolase superfa transferase; 2.20A {Leptospira interrogans} SCOP: c.69.1.40 | Back alignment and structure |
|---|
Probab=98.86 E-value=3.7e-08 Score=102.70 Aligned_cols=80 Identities=16% Similarity=0.222 Sum_probs=57.4
Q ss_pred HHHCCeEEEEcCCCCcCCCCCCCCc---------------hhhHHHHHHHHHHHHHHHHHcCCCCCCcE-EEEEechHHH
Q 005240 551 FLARRFAVLAGPSIPIIGEGDKLPN---------------DRFVEQLVSSAEAAVEEVVRRGVADPSRI-AVGGHSYGAF 614 (706)
Q Consensus 551 l~~~G~~v~~~~~~~~~g~g~~~~~---------------~~~~~~~~~D~~~~~~~l~~~~~id~~~i-~i~G~S~GG~ 614 (706)
|++.||.|+..+.+|. ++|.+... ........+|+.++++.+ +.+++ .++||||||.
T Consensus 85 l~~~g~~vi~~D~~G~-~~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~l~~l------~~~~~~~lvGhS~Gg~ 157 (366)
T 2pl5_A 85 FDTNQYFIICSNVIGG-CKGSSGPLSIHPETSTPYGSRFPFVSIQDMVKAQKLLVESL------GIEKLFCVAGGSMGGM 157 (366)
T ss_dssp EETTTCEEEEECCTTC-SSSSSSTTSBCTTTSSBCGGGSCCCCHHHHHHHHHHHHHHT------TCSSEEEEEEETHHHH
T ss_pred ccccccEEEEecCCCc-ccCCCCCCCCCCCCCccccCCCCcccHHHHHHHHHHHHHHc------CCceEEEEEEeCccHH
Confidence 4578999999777652 03333210 113455666666666543 34688 8999999999
Q ss_pred HHHHHHHhCCCceeEEEeccCCC
Q 005240 615 MTAHLLAHAPHLFCCGIARSGSY 637 (706)
Q Consensus 615 ~a~~~~~~~p~~~~a~v~~~~~~ 637 (706)
+++.++.++|++++++|+.++..
T Consensus 158 ia~~~a~~~p~~v~~lvl~~~~~ 180 (366)
T 2pl5_A 158 QALEWSIAYPNSLSNCIVMASTA 180 (366)
T ss_dssp HHHHHHHHSTTSEEEEEEESCCS
T ss_pred HHHHHHHhCcHhhhheeEeccCc
Confidence 99999999999999999988753
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.86 E-value=6.1e-07 Score=92.95 Aligned_cols=246 Identities=8% Similarity=0.008 Sum_probs=137.3
Q ss_pred cceeEeecCCCCCCCCe-eeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCc
Q 005240 5 TGIGIHRLLPDDSLGPE-KEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~-~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~ 83 (706)
..|.|+++... +... +.+.. ....+..+.|||||++|+.... ...|.++|+.+++..++..+...
T Consensus 64 g~i~iw~~~~~--~~~~~~~~~~--h~~~v~~~~~~~~~~~l~s~~~----------dg~v~iwd~~~~~~~~~~~~~~~ 129 (368)
T 3mmy_A 64 NDVRCWEVQDS--GQTIPKAQQM--HTGPVLDVCWSDDGSKVFTASC----------DKTAKMWDLSSNQAIQIAQHDAP 129 (368)
T ss_dssp SEEEEEEECTT--SCEEEEEEEE--CSSCEEEEEECTTSSEEEEEET----------TSEEEEEETTTTEEEEEEECSSC
T ss_pred CcEEEEEcCCC--CceeEEEecc--ccCCEEEEEECcCCCEEEEEcC----------CCcEEEEEcCCCCceeeccccCc
Confidence 35788888651 1221 22332 2335889999999999987642 35788889998887776544432
Q ss_pred cccccccceEE--ecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEE
Q 005240 84 CLNAVFGSFVW--VNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (706)
Q Consensus 84 ~~~~~~~~~~w--SpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~ 161 (706)
+..+.| +|+++.|+..+. .+.|.+
T Consensus 130 -----v~~~~~~~~~~~~~l~~~~~-------------------------------------------------dg~i~v 155 (368)
T 3mmy_A 130 -----VKTIHWIKAPNYSCVMTGSW-------------------------------------------------DKTLKF 155 (368)
T ss_dssp -----EEEEEEEECSSCEEEEEEET-------------------------------------------------TSEEEE
T ss_pred -----eEEEEEEeCCCCCEEEEccC-------------------------------------------------CCcEEE
Confidence 778999 899998877642 157888
Q ss_pred Ecc-CCC-ceecCCCceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeE--EcccCCCCCCCCccc
Q 005240 162 GSL-DGT-AKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR--ELCDLPPAEDIPVCY 237 (706)
Q Consensus 162 ~~l-~g~-~~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~l~~~~~~~~~p~~~ 237 (706)
+++ +++ ...+........+.++++ .++..... ..+.+|++...... .+.....
T Consensus 156 wd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-------------~~i~~~~~~~~~~~~~~~~~~~~-------- 212 (368)
T 3mmy_A 156 WDTRSSNPMMVLQLPERCYCADVIYP--MAVVATAE-------------RGLIVYQLENQPSEFRRIESPLK-------- 212 (368)
T ss_dssp ECSSCSSCSEEEECSSCEEEEEEETT--EEEEEEGG-------------GCEEEEECSSSCEEEEECCCSCS--------
T ss_pred EECCCCcEEEEEecCCCceEEEecCC--eeEEEeCC-------------CcEEEEEeccccchhhhcccccc--------
Confidence 898 553 334433344444444443 45444432 36888988754322 2211110
Q ss_pred CccCCCCcceeeecCCCc--eEEEEEeccCCCCccccCccceeeeecCCCCCCCC----ceEEeeccc------------
Q 005240 238 NSVREGMRSISWRADKPS--TLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEK----PEILHKLDL------------ 299 (706)
Q Consensus 238 ~~~~~g~~~~~~spdg~~--~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~----~~~l~~~~~------------ 299 (706)
.....+.+.++... ..+.+.. ..+.+.+++. .... ...+.....
T Consensus 213 ----~~~~~~~~~~~~~~~~~~~~~~~-----------~dg~i~i~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (368)
T 3mmy_A 213 ----HQHRCVAIFKDKQNKPTGFALGS-----------IEGRVAIHYI---NPPNPAKDNFTFKCHRSNGTNTSAPQDIY 274 (368)
T ss_dssp ----SCEEEEEEEECTTSCEEEEEEEE-----------TTSEEEEEES---SCSCHHHHSEEEECSEEC----CCCEEEC
T ss_pred ----CCCceEEEcccCCCCCCeEEEec-----------CCCcEEEEec---CCCCccccceeeeeeeccccccccccccc
Confidence 01112233333321 1121211 1124666766 3322 122222222
Q ss_pred ccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEee
Q 005240 300 RFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 300 ~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 371 (706)
.+..+.|+||++.|+..+.+ ..|.++|+.++ +....+..... ....+.|+|||++|+...
T Consensus 275 ~v~~~~~sp~~~~l~s~~~d----g~i~iwd~~~~--~~~~~~~~~~~------~v~~~~~s~~g~~l~~~s 334 (368)
T 3mmy_A 275 AVNGIAFHPVHGTLATVGSD----GRFSFWDKDAR--TKLKTSEQLDQ------PISACCFNHNGNIFAYAS 334 (368)
T ss_dssp CEEEEEECTTTCCEEEEETT----SCEEEEETTTT--EEEEECCCCSS------CEEEEEECTTSSCEEEEE
T ss_pred ceEEEEEecCCCEEEEEccC----CeEEEEECCCC--cEEEEecCCCC------CceEEEECCCCCeEEEEe
Confidence 57889999999988876522 23667777763 22222221111 122478999999988875
|
| >3i1i_A Homoserine O-acetyltransferase; structural genomics, IDP01610, O-acetyltransfera bacillus anthracis; HET: MSE; 2.44A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=98.85 E-value=1.8e-08 Score=105.40 Aligned_cols=77 Identities=17% Similarity=0.180 Sum_probs=51.8
Q ss_pred HHHHCCeEEEEcCCCCc------C--CCCCCCCc------------hhhHHHHHHHHHHHHHHHHHcCCCCCCcEE-EEE
Q 005240 550 IFLARRFAVLAGPSIPI------I--GEGDKLPN------------DRFVEQLVSSAEAAVEEVVRRGVADPSRIA-VGG 608 (706)
Q Consensus 550 ~l~~~G~~v~~~~~~~~------~--g~g~~~~~------------~~~~~~~~~D~~~~~~~l~~~~~id~~~i~-i~G 608 (706)
.|++.||.|++++.+|. . +.|..... ........+|+.+.++.+ +.+++. |+|
T Consensus 80 ~l~~~~~~vi~~D~~G~G~S~G~~~g~~g~~~~~p~~~~~~~~~~~~~~~~~~~~d~~~~l~~l------~~~~~~ilvG 153 (377)
T 3i1i_A 80 AIDTNQYFVICTDNLCNVQVKNPHVITTGPKSINPKTGDEYAMDFPVFTFLDVARMQCELIKDM------GIARLHAVMG 153 (377)
T ss_dssp SEETTTCEEEEECCTTCSCTTSTTCCCCSTTSBCTTTSSBCGGGSCCCCHHHHHHHHHHHHHHT------TCCCBSEEEE
T ss_pred ccccccEEEEEecccccccccCCCcccCCCCCCCCCCCCcccCCCCCCCHHHHHHHHHHHHHHc------CCCcEeeEEe
Confidence 45678999999776632 0 11111110 112345556665555433 345775 999
Q ss_pred echHHHHHHHHHHhCCCceeEEEe
Q 005240 609 HSYGAFMTAHLLAHAPHLFCCGIA 632 (706)
Q Consensus 609 ~S~GG~~a~~~~~~~p~~~~a~v~ 632 (706)
|||||.+++.++.++|++++++|+
T Consensus 154 hS~Gg~ia~~~a~~~p~~v~~lvl 177 (377)
T 3i1i_A 154 PSAGGMIAQQWAVHYPHMVERMIG 177 (377)
T ss_dssp ETHHHHHHHHHHHHCTTTBSEEEE
T ss_pred eCHhHHHHHHHHHHChHHHHHhcc
Confidence 999999999999999999999999
|
| >1isp_A Lipase; alpha/beta hydrolase fold, hydrolase; 1.30A {Bacillus subtilis} SCOP: c.69.1.18 PDB: 1i6w_A 1r4z_A* 1r50_A* 2qxu_A 2qxt_A 1t4m_A 1t2n_A 3d2a_A 3qzu_A 3d2b_A 3d2c_A 3qmm_A | Back alignment and structure |
|---|
Probab=98.85 E-value=1.1e-08 Score=95.12 Aligned_cols=153 Identities=10% Similarity=-0.037 Sum_probs=92.6
Q ss_pred eEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCe---EEEEcCCCCcCCCCCCCCchhhHHHHHHHHHHHH
Q 005240 514 PCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRF---AVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAV 590 (706)
Q Consensus 514 p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~---~v~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~ 590 (706)
|+||++||.+.. ...+ ..+...|++.|| .|+..+.+ |+|.+. ........+++..
T Consensus 4 ~~vv~~HG~~~~-----------~~~~----~~~~~~l~~~G~~~~~v~~~d~~---g~g~s~--~~~~~~~~~~~~~-- 61 (181)
T 1isp_A 4 NPVVMVHGIGGA-----------SFNF----AGIKSYLVSQGWSRDKLYAVDFW---DKTGTN--YNNGPVLSRFVQK-- 61 (181)
T ss_dssp CCEEEECCTTCC-----------GGGG----HHHHHHHHHTTCCGGGEEECCCS---CTTCCH--HHHHHHHHHHHHH--
T ss_pred CeEEEECCcCCC-----------HhHH----HHHHHHHHHcCCCCccEEEEecC---CCCCch--hhhHHHHHHHHHH--
Confidence 678899996311 1111 245677888998 47775654 344331 1122333333333
Q ss_pred HHHHHcCCCCCCcEEEEEechHHHHHHHHHHhC--CCceeEEEeccCCCCCCC------------CCccc---hHHHHHH
Q 005240 591 EEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHA--PHLFCCGIARSGSYNKTL------------TPFGF---QAERFFD 653 (706)
Q Consensus 591 ~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~--p~~~~a~v~~~~~~d~~~------------~~~~~---~~~~~~~ 653 (706)
+.++ .+.+++.++||||||.+++.++.+. |++++++|+.+|...... .|... ..+.+..
T Consensus 62 --~~~~--~~~~~~~lvG~S~Gg~~a~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~~~~~~p~l~i~G~~D~~v~ 137 (181)
T 1isp_A 62 --VLDE--TGAKKVDIVAHSMGGANTLYYIKNLDGGNKVANVVTLGGANRLTTGKALPGTDPNQKILYTSIYSSADMIVM 137 (181)
T ss_dssp --HHHH--HCCSCEEEEEETHHHHHHHHHHHHSSGGGTEEEEEEESCCGGGTCSBCCCCSCTTCCCEEEEEEETTCSSSC
T ss_pred --HHHH--cCCCeEEEEEECccHHHHHHHHHhcCCCceEEEEEEEcCcccccccccCCCCCCccCCcEEEEecCCCcccc
Confidence 3332 2457899999999999999999988 889999999998753211 01000 0000000
Q ss_pred HHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHH
Q 005240 654 ALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKY 694 (706)
Q Consensus 654 ~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~~~~ 694 (706)
.-...-...+++++++++|.+.... .++.+.+.+||++.
T Consensus 138 ~~~~~~~~~~~~~~~~~gH~~~~~~--~~~~~~i~~fl~~~ 176 (181)
T 1isp_A 138 NYLSRLDGARNVQIHGVGHIGLLYS--SQVNSLIKEGLNGG 176 (181)
T ss_dssp HHHHCCBTSEEEEESSCCTGGGGGC--HHHHHHHHHHHTTT
T ss_pred cccccCCCCcceeeccCchHhhccC--HHHHHHHHHHHhcc
Confidence 0011223468999999999876433 36888888888764
|
| >3fob_A Bromoperoxidase; structural genomics, IDP00046, bacillus ANT peroxidase, oxidoreductase; 1.74A {Bacillus anthracis str} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=98.84 E-value=5.6e-08 Score=97.34 Aligned_cols=114 Identities=9% Similarity=0.035 Sum_probs=74.5
Q ss_pred ccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCC
Q 005240 489 RKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIG 568 (706)
Q Consensus 489 ~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g 568 (706)
..+|..++.... + . -|.||++||.+.. ...|. .....|++.||.|+..+.+ |
T Consensus 13 ~~~g~~l~y~~~---G----~---g~~vvllHG~~~~-----------~~~w~----~~~~~l~~~g~~vi~~D~~---G 64 (281)
T 3fob_A 13 NQAPIEIYYEDH---G----T---GKPVVLIHGWPLS-----------GRSWE----YQVPALVEAGYRVITYDRR---G 64 (281)
T ss_dssp TTEEEEEEEEEE---S----S---SEEEEEECCTTCC-----------GGGGT----TTHHHHHHTTEEEEEECCT---T
T ss_pred CCCceEEEEEEC---C----C---CCeEEEECCCCCc-----------HHHHH----HHHHHHHhCCCEEEEeCCC---C
Confidence 446666664443 1 1 2457789997521 11221 2356778899999996665 5
Q ss_pred CCCCCCc--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHh-CCCceeEEEeccCC
Q 005240 569 EGDKLPN--DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAH-APHLFCCGIARSGS 636 (706)
Q Consensus 569 ~g~~~~~--~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~-~p~~~~a~v~~~~~ 636 (706)
+|.+... ....+...+|+.+.++.+ +.+++.++||||||.+++.++.+ .|++++.++..++.
T Consensus 65 ~G~S~~~~~~~~~~~~a~dl~~ll~~l------~~~~~~lvGhS~GG~i~~~~~a~~~p~~v~~lvl~~~~ 129 (281)
T 3fob_A 65 FGKSSQPWEGYEYDTFTSDLHQLLEQL------ELQNVTLVGFSMGGGEVARYISTYGTDRIEKVVFAGAV 129 (281)
T ss_dssp STTSCCCSSCCSHHHHHHHHHHHHHHT------TCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCC
T ss_pred CCCCCCCccccCHHHHHHHHHHHHHHc------CCCcEEEEEECccHHHHHHHHHHccccceeEEEEecCC
Confidence 5655432 223556677777776655 33689999999999877766555 58999999987754
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=98.84 E-value=8.6e-08 Score=97.87 Aligned_cols=227 Identities=17% Similarity=0.244 Sum_probs=127.0
Q ss_pred cceeEeecCCCCCCCCeeeeecCCC-CCcccceeeCC--CCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCC
Q 005240 5 TGIGIHRLLPDDSLGPEKEVHGYPD-GAKINFVSWSP--DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESP 81 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~i~~~~~-~~~~~~~~~SP--DG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~ 81 (706)
..|.|.++.. ++...+..+.. ...+..++|+| +|+.||..+. + ..|.++|+.+++..++....
T Consensus 35 ~~v~lwd~~~----~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~--------D--~~v~iWd~~~~~~~~~~~~~ 100 (316)
T 3bg1_A 35 RSVKIFDVRN----GGQILIADLRGHEGPVWQVAWAHPMYGNILASCSY--------D--RKVIIWREENGTWEKSHEHA 100 (316)
T ss_dssp TEEEEEEEET----TEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEET--------T--SCEEEECCSSSCCCEEEEEC
T ss_pred CeEEEEEecC----CCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEEC--------C--CEEEEEECCCCcceEEEEcc
Confidence 3588888866 54433332322 23588899997 4888877642 3 45666788776432221111
Q ss_pred CccccccccceEEecC--CcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceE
Q 005240 82 DICLNAVFGSFVWVNN--STLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQL 159 (706)
Q Consensus 82 ~~~~~~~~~~~~wSpD--g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l 159 (706)
.+ ...+..+.|+|| |.+|+..+.+ +.|
T Consensus 101 ~h--~~~V~~v~~~p~~~g~~lasgs~D-------------------------------------------------~~i 129 (316)
T 3bg1_A 101 GH--DSSVNSVCWAPHDYGLILACGSSD-------------------------------------------------GAI 129 (316)
T ss_dssp CC--SSCCCEEEECCTTTCSCEEEECSS-------------------------------------------------SCE
T ss_pred CC--CCceEEEEECCCCCCcEEEEEcCC-------------------------------------------------CCE
Confidence 11 113778999998 7777765421 345
Q ss_pred EEEccCC--Cce--ec-CCC-ceEeeeeeCCCC-----------------cEEEEEeeccCcccccccccccceEEEEec
Q 005240 160 VLGSLDG--TAK--DF-GTP-AVYTAVEPSPDQ-----------------KYVLITSMHRPYSYKVPCARFSQKVQVWTT 216 (706)
Q Consensus 160 ~~~~l~g--~~~--~l-t~~-~~~~~~~~SpDG-----------------~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~ 216 (706)
.++++.+ ... .. ... ..+..++|+|++ ++|+..+. ...|.+|++
T Consensus 130 ~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~-------------D~~v~lWd~ 196 (316)
T 3bg1_A 130 SLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGC-------------DNLIKLWKE 196 (316)
T ss_dssp EEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBT-------------TSBCCEEEE
T ss_pred EEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecC-------------CCeEEEEEe
Confidence 5566632 221 11 222 456788899984 34432221 247889998
Q ss_pred CCC-eeEEcccCCCCCCCCcccCccCCCCcceeeecCCC---ceEEEEEeccCCCCccccCccceeeeecCCCCCCCC--
Q 005240 217 DGK-LVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP---STLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEK-- 290 (706)
Q Consensus 217 ~~~-~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~---~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-- 290 (706)
.+. ..+.+....+.. ..+..++|+|++. ..|+-. .. ...|.+|+++....+.
T Consensus 197 ~~~~~~~~~~~l~~h~----------~~V~~v~~sp~~~~~~~~las~-s~-----------D~~v~iw~~~~~~~~~~~ 254 (316)
T 3bg1_A 197 EEDGQWKEEQKLEAHS----------DWVRDVAWAPSIGLPTSTIASC-SQ-----------DGRVFIWTCDDASSNTWS 254 (316)
T ss_dssp CTTSCEEEEECCBCCS----------SCEEEEECCCCSSCSCCEEEEE-ET-----------TCEEEEEECSSTTCCCCB
T ss_pred CCCCccceeeecccCC----------CceEEEEecCCCCCCCceEEEE-cC-----------CCeEEEEEccCccccchh
Confidence 743 222222221111 2255789999972 214322 11 1247788773111111
Q ss_pred ceEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCC
Q 005240 291 PEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (706)
Q Consensus 291 ~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~ 333 (706)
.+.+......+..++|+|||+.|+..+. ++..+||..+..+
T Consensus 255 ~~~~~~~~~~v~~v~~sp~g~~las~~~--D~~v~lw~~~~~g 295 (316)
T 3bg1_A 255 PKLLHKFNDVVWHVSWSITANILAVSGG--DNKVTLWKESVDG 295 (316)
T ss_dssp CCEEEECSSCEEEEEECTTTCCEEEEES--SSCEEEEEECTTS
T ss_pred hhhhhcCCCcEEEEEEcCCCCEEEEEcC--CCeEEEEEECCCC
Confidence 2345555778889999999999887653 3566788776553
|
| >3nwo_A PIP, proline iminopeptidase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, mycobac smegmatis; 1.90A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=98.84 E-value=8.4e-08 Score=98.65 Aligned_cols=117 Identities=12% Similarity=0.078 Sum_probs=78.1
Q ss_pred CCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHH-CCeEEEEcCCCCcCCC
Q 005240 491 DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA-RRFAVLAGPSIPIIGE 569 (706)
Q Consensus 491 dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~G~~v~~~~~~~~~g~ 569 (706)
+|..+.....-|++- +. |-+.||++||++-. ...+. .....|++ .||.|+..+-+ |+
T Consensus 36 ~g~~l~y~~~G~~~~--~~--~g~plvllHG~~~~-----------~~~w~----~~~~~l~~~~~~~Via~D~r---G~ 93 (330)
T 3nwo_A 36 GDHETWVQVTTPENA--QP--HALPLIVLHGGPGM-----------AHNYV----ANIAALADETGRTVIHYDQV---GC 93 (330)
T ss_dssp TTEEEEEEEECCSSC--CT--TCCCEEEECCTTTC-----------CSGGG----GGGGGHHHHHTCCEEEECCT---TS
T ss_pred cCcEEEEEEecCccC--CC--CCCcEEEECCCCCC-----------chhHH----HHHHHhccccCcEEEEECCC---CC
Confidence 788898888876421 11 11237778996421 11111 12334554 69999985554 56
Q ss_pred CCCCC--c--h--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccC
Q 005240 570 GDKLP--N--D--RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSG 635 (706)
Q Consensus 570 g~~~~--~--~--~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~ 635 (706)
|.+.. . . .......+|+.+.++.+ +.+++.++||||||++++.++.++|++++++|..++
T Consensus 94 G~S~~~~~~~~~~~~~~~~a~dl~~ll~~l------g~~~~~lvGhSmGG~va~~~A~~~P~~v~~lvl~~~ 159 (330)
T 3nwo_A 94 GNSTHLPDAPADFWTPQLFVDEFHAVCTAL------GIERYHVLGQSWGGMLGAEIAVRQPSGLVSLAICNS 159 (330)
T ss_dssp TTSCCCTTSCGGGCCHHHHHHHHHHHHHHH------TCCSEEEEEETHHHHHHHHHHHTCCTTEEEEEEESC
T ss_pred CCCCCCCCCccccccHHHHHHHHHHHHHHc------CCCceEEEecCHHHHHHHHHHHhCCccceEEEEecC
Confidence 65543 1 1 13456677888877766 236899999999999999999999999999987654
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.83 E-value=1e-07 Score=102.11 Aligned_cols=196 Identities=12% Similarity=0.010 Sum_probs=109.4
Q ss_pred ccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccC-CCccccccccceEEec-CCcEEEEEecCCCC
Q 005240 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFES-PDICLNAVFGSFVWVN-NSTLLIFTIPSSRR 110 (706)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~-~~~~~~~~~~~~~wSp-Dg~~l~~~~~~~~~ 110 (706)
...+.|+|||+.++... + ++..+.....+..+ .. .+..++|+| ||++|+..+.+
T Consensus 30 ~~~~~f~~~~~~~~~~~--------------~--w~~~g~~~~~~~~~h~~-----~V~~~~~s~~~~~~l~s~s~d--- 85 (437)
T 3gre_A 30 RDYKEFGPIQEIVRSPN--------------M--GNLRGKLIATLMENEPN-----SITSSAVSPGETPYLITGSDQ--- 85 (437)
T ss_dssp GGCGGGCCCCCCCCCCC--------------G--GGCCCCEEEEECTTTTS-----CEEEEEEECSSSCEEEEEETT---
T ss_pred hchhhcCCccccccccc--------------c--ccccceEEeeeccCCCC-----ceEEEEECCCCCCEEEEecCC---
Confidence 34567899999887632 1 23333333344222 22 278899999 99988876421
Q ss_pred CCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-C---CC-ce-ecC-CC-ceEeeeee
Q 005240 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-D---GT-AK-DFG-TP-AVYTAVEP 182 (706)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~---g~-~~-~lt-~~-~~~~~~~~ 182 (706)
+.|.++++ + +. .+ .++ .. ..+..++|
T Consensus 86 ----------------------------------------------g~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~ 119 (437)
T 3gre_A 86 ----------------------------------------------GVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITM 119 (437)
T ss_dssp ----------------------------------------------SEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEE
T ss_pred ----------------------------------------------ceEEEeECcccccCcccceeeeccCCCCEEEEEE
Confidence 45666676 3 32 11 111 12 67889999
Q ss_pred CCCCcEEEEEeeccCcccccccccccceEEEEecC----CCeeEEcccCCCCCCCCcccCc-cCCCCcce--eeecCCCc
Q 005240 183 SPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD----GKLVRELCDLPPAEDIPVCYNS-VREGMRSI--SWRADKPS 255 (706)
Q Consensus 183 SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~l~~~~~~~~~p~~~~~-~~~g~~~~--~~spdg~~ 255 (706)
+||++.|+..+.+ ..|.+|+++ +...+.+....... -.+.+. .......+ .+++|++.
T Consensus 120 ~~~~~~l~s~s~d-------------g~i~vwd~~~~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (437)
T 3gre_A 120 IPNFDAFAVSSKD-------------GQIIVLKVNHYQQESEVKFLNCECIRK--INLKNFGKNEYAVRMRAFVNEEKSL 184 (437)
T ss_dssp CTTSSEEEEEETT-------------SEEEEEEEEEEEETTEEEEEEEEEEEE--EEGGGGSSCCCEEEEEEEECSSCEE
T ss_pred eCCCCEEEEEeCC-------------CEEEEEEeccccCCceeeccccceeEE--EEccCcccccCceEEEEEEcCCCCE
Confidence 9999998866544 378889884 32222211110000 000000 00011122 25566664
Q ss_pred eEEEEEeccCCCCccccCccceeeeecCCCCCCCCce-EEee--cccccccceecCCCceEEEEeeccccceEEEEEcCC
Q 005240 256 TLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPE-ILHK--LDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPG 332 (706)
Q Consensus 256 ~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~-~l~~--~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~ 332 (706)
|+... ....|.+||+ .+++.. .+.. ....+..+.|+|+++.|+..+.+ ..|.++|+.
T Consensus 185 -l~~~~------------~d~~i~iwd~---~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d----g~i~iwd~~ 244 (437)
T 3gre_A 185 -LVALT------------NLSRVIIFDI---RTLERLQIIENSPRHGAVSSICIDEECCVLILGTTR----GIIDIWDIR 244 (437)
T ss_dssp -EEEEE------------TTSEEEEEET---TTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETT----SCEEEEETT
T ss_pred -EEEEe------------CCCeEEEEeC---CCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCC----CeEEEEEcC
Confidence 43221 1235889998 455443 3444 46788899999999988876522 236666776
Q ss_pred C
Q 005240 333 S 333 (706)
Q Consensus 333 ~ 333 (706)
+
T Consensus 245 ~ 245 (437)
T 3gre_A 245 F 245 (437)
T ss_dssp T
T ss_pred C
Confidence 6
|
| >2qmq_A Protein NDRG2, protein NDR2; alpha/beta-hydrolases fold, NDR family, developmental protei differentiation, neurogenesis, phosphorylation; HET: 2PE; 1.70A {Mus musculus} PDB: 2xmq_A 2xmr_A 2xms_A | Back alignment and structure |
|---|
Probab=98.82 E-value=3.7e-08 Score=98.79 Aligned_cols=122 Identities=16% Similarity=0.099 Sum_probs=77.8
Q ss_pred CCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCC-cCC-CCchHHHHHHHCCeEEEEcCCCCcCC
Q 005240 491 DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNE-FSG-MTPTSSLIFLARRFAVLAGPSIPIIG 568 (706)
Q Consensus 491 dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~l~~~G~~v~~~~~~~~~g 568 (706)
+|..+....+-++. + . -|+||++||.+... .. +.. +....+..|+ .+|.|+..+.+|. |
T Consensus 19 ~~~~l~y~~~G~~~--~-~---~p~vvllHG~~~~~-----------~~~~~~~~~~~~~~~L~-~~~~vi~~D~~G~-G 79 (286)
T 2qmq_A 19 PYGSVTFTVYGTPK--P-K---RPAIFTYHDVGLNY-----------KSCFQPLFRFGDMQEII-QNFVRVHVDAPGM-E 79 (286)
T ss_dssp TTEEEEEEEESCCC--T-T---CCEEEEECCTTCCH-----------HHHHHHHHTSHHHHHHH-TTSCEEEEECTTT-S
T ss_pred CCeEEEEEeccCCC--C-C---CCeEEEeCCCCCCc-----------hhhhhhhhhhchhHHHh-cCCCEEEecCCCC-C
Confidence 67788877765432 1 1 37899999964210 00 000 0000334444 4799988666532 2
Q ss_pred CCCCCCchh----hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCC
Q 005240 569 EGDKLPNDR----FVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSY 637 (706)
Q Consensus 569 ~g~~~~~~~----~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~ 637 (706)
.+....... ......+|+.++++.+ +..++.++|||+||.+++.++.++|++++++|+.++..
T Consensus 80 ~s~~~~~~~~~~~~~~~~~~~l~~~l~~l------~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 146 (286)
T 2qmq_A 80 EGAPVFPLGYQYPSLDQLADMIPCILQYL------NFSTIIGVGVGAGAYILSRYALNHPDTVEGLVLINIDP 146 (286)
T ss_dssp TTCCCCCTTCCCCCHHHHHHTHHHHHHHH------TCCCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCC
T ss_pred CCCCCCCCCCCccCHHHHHHHHHHHHHHh------CCCcEEEEEEChHHHHHHHHHHhChhheeeEEEECCCC
Confidence 222211111 4566777777777765 23589999999999999999999999999999998854
|
| >3bdv_A Uncharacterized protein DUF1234; DUF1234 family protein, alpha/beta-hydrolases fold, structur genomics; HET: MSE; 1.66A {Pectobacterium atrosepticum SCRI1043} | Back alignment and structure |
|---|
Probab=98.82 E-value=4.1e-08 Score=91.99 Aligned_cols=103 Identities=15% Similarity=0.118 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCCCC------------CCCcc--
Q 005240 580 EQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKT------------LTPFG-- 645 (706)
Q Consensus 580 ~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d~~------------~~~~~-- 645 (706)
....+|+.++++. .+ +++.++|||+||.+++.++.++|++++++++.+|..... ..|..
T Consensus 59 ~~~~~~~~~~~~~------~~-~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~P~lii 131 (191)
T 3bdv_A 59 DRWVLAIRRELSV------CT-QPVILIGHSFGALAACHVVQQGQEGIAGVMLVAPAEPMRFEIDDRIQASPLSVPTLTF 131 (191)
T ss_dssp HHHHHHHHHHHHT------CS-SCEEEEEETHHHHHHHHHHHTTCSSEEEEEEESCCCGGGGTCTTTSCSSCCSSCEEEE
T ss_pred HHHHHHHHHHHHh------cC-CCeEEEEEChHHHHHHHHHHhcCCCccEEEEECCCccccccCccccccccCCCCEEEE
Confidence 4445555554443 23 799999999999999999999999999999999865421 01211
Q ss_pred -------c---hHHHHHHHHHhCCCcEEEEEeCCCCccCCCcc--cHHHHHHHHHHHHHHH
Q 005240 646 -------F---QAERFFDALKGHGALSRLVLLPFEHHVYAARE--NVMHVIWETDRWLQKY 694 (706)
Q Consensus 646 -------~---~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~--~~~~~~~~~~~f~~~~ 694 (706)
. ..+++.+.+ ..+++++|+++|.+.... ...+..+.+.+||++.
T Consensus 132 ~g~~D~~~~~~~~~~~~~~~-----~~~~~~~~~~gH~~~~~~~~~~~~~~~~i~~fl~~~ 187 (191)
T 3bdv_A 132 ASHNDPLMSFTRAQYWAQAW-----DSELVDVGEAGHINAEAGFGPWEYGLKRLAEFSEIL 187 (191)
T ss_dssp ECSSBTTBCHHHHHHHHHHH-----TCEEEECCSCTTSSGGGTCSSCHHHHHHHHHHHHTT
T ss_pred ecCCCCcCCHHHHHHHHHhc-----CCcEEEeCCCCcccccccchhHHHHHHHHHHHHHHh
Confidence 0 122444444 468999999999875421 3345558888888764
|
| >3fla_A RIFR; alpha-beta hydrolase thioesterase, hydrolase; HET: MSE; 1.80A {Amycolatopsis mediterranei} PDB: 3flb_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=2.4e-08 Score=98.84 Aligned_cols=100 Identities=17% Similarity=0.069 Sum_probs=65.9
Q ss_pred ceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCCCCc--hhhHHHHHHHHHHHH
Q 005240 513 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPN--DRFVEQLVSSAEAAV 590 (706)
Q Consensus 513 ~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~--~~~~~~~~~D~~~~~ 590 (706)
.|+||++||.+.. ...+ ..++..|+ .+|.|+..+.+ |+|.+... ........+|+.+++
T Consensus 20 ~~~vv~~HG~~~~-----------~~~~----~~~~~~l~-~~~~v~~~d~~---G~G~s~~~~~~~~~~~~~~~~~~~l 80 (267)
T 3fla_A 20 RARLVCLPHAGGS-----------ASFF----FPLAKALA-PAVEVLAVQYP---GRQDRRHEPPVDSIGGLTNRLLEVL 80 (267)
T ss_dssp SEEEEEECCTTCC-----------GGGG----HHHHHHHT-TTEEEEEECCT---TSGGGTTSCCCCSHHHHHHHHHHHT
T ss_pred CceEEEeCCCCCC-----------chhH----HHHHHHhc-cCcEEEEecCC---CCCCCCCCCCCcCHHHHHHHHHHHH
Confidence 5889999996421 1111 12334444 45999986665 44443221 223455555665555
Q ss_pred HHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCc----eeEEEeccCCC
Q 005240 591 EEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHL----FCCGIARSGSY 637 (706)
Q Consensus 591 ~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~----~~a~v~~~~~~ 637 (706)
+.+ +..++.++|||+||++++.++.+.|++ +++++..++..
T Consensus 81 ~~~------~~~~~~lvG~S~Gg~ia~~~a~~~~~~~~~~v~~lvl~~~~~ 125 (267)
T 3fla_A 81 RPF------GDRPLALFGHSMGAIIGYELALRMPEAGLPAPVHLFASGRRA 125 (267)
T ss_dssp GGG------TTSCEEEEEETHHHHHHHHHHHHTTTTTCCCCSEEEEESCCC
T ss_pred Hhc------CCCceEEEEeChhHHHHHHHHHhhhhhccccccEEEECCCCc
Confidence 543 447899999999999999999999986 88888887653
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.80 E-value=1.6e-05 Score=82.64 Aligned_cols=192 Identities=8% Similarity=-0.071 Sum_probs=93.7
Q ss_pred ceEEEEccC-C--Ccee--cCC--------C-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeE
Q 005240 157 AQLVLGSLD-G--TAKD--FGT--------P-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR 222 (706)
Q Consensus 157 ~~l~~~~l~-g--~~~~--lt~--------~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 222 (706)
..|+++|+. . +++. .-+ + .....+..+||| |+++...... ......+.++|.++.++.
T Consensus 106 ~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~------g~~~g~v~vlD~~T~~v~ 177 (462)
T 2ece_A 106 SRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEE------GEGPGGILMLDHYSFEPL 177 (462)
T ss_dssp CCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETT------SCSCCEEEEECTTTCCEE
T ss_pred CeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcC------CCCCCeEEEEECCCCeEE
Confidence 679999983 2 2222 111 1 244567889999 6555544321 112468999999866544
Q ss_pred -EcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEecc-------CCCCcc-ccCccceeeeecCCCCCCCCceE
Q 005240 223 -ELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQD-------RGDANV-EVSPRDIIYTQPAEPAEGEKPEI 293 (706)
Q Consensus 223 -~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~-------~~~~~~-~~~~~~~l~~~d~~~~~~~~~~~ 293 (706)
++......... .+.+.|+|+++. +++++.. +..... .....+.|.++|. ++++..+
T Consensus 178 ~~~~~~~~~~~~----------~Yd~~~~p~~~~--mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~---~~~k~~~ 242 (462)
T 2ece_A 178 GKWEIDRGDQYL----------AYDFWWNLPNEV--LVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDL---RKRKRIH 242 (462)
T ss_dssp EECCSBCTTCCC----------CCCEEEETTTTE--EEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEET---TTTEEEE
T ss_pred EEEccCCCCccc----------cceEEECCCCCE--EEEccCcCccccccccchhhhhhccCCEEEEEEC---CCCcEee
Confidence 44323222111 236789999994 3444311 100000 0023457999998 4443332
Q ss_pred Eeecc---ccccc--ceecCCCceEEEEee--ccccceEEEEEcCCCCCCCceeeecCc---ccccc---------cCCC
Q 005240 294 LHKLD---LRFRS--VSWCDDSLALVNETW--YKTSQTRTWLVCPGSKDVAPRVLFDRV---FENVY---------SDPG 354 (706)
Q Consensus 294 l~~~~---~~~~~--~~wspDg~~l~~~~~--~~~~~~~l~~~d~~~~~~~~~~l~~~~---~~~~~---------~~~~ 354 (706)
-.... ..... +.|+|||++++.... ...-...|+.+..+.+..+..+..+-. +.... ..+.
T Consensus 243 tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~ 322 (462)
T 2ece_A 243 SLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPL 322 (462)
T ss_dssp EEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCC
T ss_pred EEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCc
Confidence 22221 11222 346999998877643 011122344333233221222221110 10000 0122
Q ss_pred CCceEeccCCCEEEEee
Q 005240 355 SPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 355 ~~~~~~s~dg~~l~~~~ 371 (706)
...+..|+||++||++.
T Consensus 323 pa~I~lS~DGrfLYVSn 339 (462)
T 2ece_A 323 VTDIDISLDDKFLYLSL 339 (462)
T ss_dssp CCCEEECTTSCEEEEEE
T ss_pred eeEEEECCCCCEEEEEe
Confidence 34577899999999876
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=98.79 E-value=4.8e-07 Score=92.76 Aligned_cols=83 Identities=14% Similarity=0.117 Sum_probs=50.6
Q ss_pred ceeEeecCCCCCCCCeeeeecCC-CCCcccceeeCC--CCCeEEEEeeccccccccCCceeEEEEEcCCCc---------
Q 005240 6 GIGIHRLLPDDSLGPEKEVHGYP-DGAKINFVSWSP--DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE--------- 73 (706)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~i~~~~-~~~~~~~~~~SP--DG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~--------- 73 (706)
.|.|+++.. .....+.+..+. ....+..+.|+| ||+.|+.... + ..|.++|+.+++
T Consensus 34 ~i~iw~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~--------d--g~v~vwd~~~~~~~~~~~~~~ 101 (351)
T 3f3f_A 34 HIKVFKLDK--DTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASY--------D--KTVKLWEEDPDQEECSGRRWN 101 (351)
T ss_dssp EEEEEEECS--SSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEET--------T--SCEEEEEECTTSCTTSSCSEE
T ss_pred eEEEEECCC--CCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcC--------C--CeEEEEecCCCcccccccCcc
Confidence 588899876 112223332222 233588999999 6999987653 3 456666666653
Q ss_pred -eeecccCCCccccccccceEEecC--CcEEEEEe
Q 005240 74 -AKPLFESPDICLNAVFGSFVWVNN--STLLIFTI 105 (706)
Q Consensus 74 -~~~lt~~~~~~~~~~~~~~~wSpD--g~~l~~~~ 105 (706)
...+..... .+..+.|+|+ ++.|+...
T Consensus 102 ~~~~~~~~~~-----~v~~~~~~~~~~~~~l~~~~ 131 (351)
T 3f3f_A 102 KLCTLNDSKG-----SLYSVKFAPAHLGLKLACLG 131 (351)
T ss_dssp EEEEECCCSS-----CEEEEEECCGGGCSEEEEEE
T ss_pred eeeeecccCC-----ceeEEEEcCCCCCcEEEEec
Confidence 222222222 2778999999 99888764
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.4e-06 Score=90.00 Aligned_cols=132 Identities=6% Similarity=-0.012 Sum_probs=79.1
Q ss_pred ceEEEEcc-CCCceecCC-C--ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCee--EEccc-CCC
Q 005240 157 AQLVLGSL-DGTAKDFGT-P--AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV--RELCD-LPP 229 (706)
Q Consensus 157 ~~l~~~~l-~g~~~~lt~-~--~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~l~~-~~~ 229 (706)
+.|.++|+ +++...+.. . ..+..++|+|||+.|+..+.+ ..|.+||+.+++. ..+.. +.
T Consensus 149 g~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~d-------------g~i~iwd~~~~~~~~~~~~~~h~- 214 (343)
T 3lrv_A 149 GTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPD-------------GILDVYNLSSPDQASSRFPVDEE- 214 (343)
T ss_dssp CCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTT-------------SCEEEEESSCTTSCCEECCCCTT-
T ss_pred CcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCC-------------CEEEEEECCCCCCCccEEeccCC-
Confidence 56777888 455443322 2 457899999999998765543 3799999986543 23322 11
Q ss_pred CCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCc-eEEee---cccccc--c
Q 005240 230 AEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP-EILHK---LDLRFR--S 303 (706)
Q Consensus 230 ~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~-~~l~~---~~~~~~--~ 303 (706)
..+..+.|+|||.. |+... ++ .|.+||+ ..++. ..+.. ....+. .
T Consensus 215 ------------~~v~~l~fs~~g~~-l~s~~--~~-----------~v~iwd~---~~~~~~~~~~~~~~~~~~~~~~~ 265 (343)
T 3lrv_A 215 ------------AKIKEVKFADNGYW-MVVEC--DQ-----------TVVCFDL---RKDVGTLAYPTYTIPEFKTGTVT 265 (343)
T ss_dssp ------------SCEEEEEECTTSSE-EEEEE--SS-----------BEEEEET---TSSTTCBSSCCCBC-----CCEE
T ss_pred ------------CCEEEEEEeCCCCE-EEEEe--CC-----------eEEEEEc---CCCCcceeecccccccccccceE
Confidence 22458899999986 55332 11 3788888 33332 22222 122233 4
Q ss_pred ceecCCCceEEEEeeccccceEEEEEcCC
Q 005240 304 VSWCDDSLALVNETWYKTSQTRTWLVCPG 332 (706)
Q Consensus 304 ~~wspDg~~l~~~~~~~~~~~~l~~~d~~ 332 (706)
+.|+|+|+.|+..+.. ++..+||.++..
T Consensus 266 ~~~~~~g~~l~~~s~~-d~~i~v~~~~~~ 293 (343)
T 3lrv_A 266 YDIDDSGKNMIAYSNE-SNSLTIYKFDKK 293 (343)
T ss_dssp EEECTTSSEEEEEETT-TTEEEEEEECTT
T ss_pred EEECCCCCEEEEecCC-CCcEEEEEEccc
Confidence 8999999999876531 244566666543
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.77 E-value=3.5e-07 Score=105.29 Aligned_cols=222 Identities=10% Similarity=0.096 Sum_probs=123.3
Q ss_pred ceEEEEccC-C--C-ceecCCC-ceEeeeeeCCC--CcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCC
Q 005240 157 AQLVLGSLD-G--T-AKDFGTP-AVYTAVEPSPD--QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPP 229 (706)
Q Consensus 157 ~~l~~~~l~-g--~-~~~lt~~-~~~~~~~~SpD--G~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 229 (706)
+.|.++++. + + ...+... ..+..++|+|+ |+.|+..+.+ ..|.+|++.++....+.....
T Consensus 31 g~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~D-------------g~I~vwd~~~~~~~~~~~~~~ 97 (753)
T 3jro_A 31 KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD-------------GKVLIWKEENGRWSQIAVHAV 97 (753)
T ss_dssp TEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETT-------------SCEEEEEEETTEEEEEEEECC
T ss_pred CcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCC-------------CeEEEEECCCCcccccccccC
Confidence 466677773 2 2 2233333 67899999998 8888766654 379999998775333322221
Q ss_pred CCCCCcccCccCCCCcceeeecC--CCceEEEEEeccCCCCccccCccceeeeecCCCCCCC---CceEEeecccccccc
Q 005240 230 AEDIPVCYNSVREGMRSISWRAD--KPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGE---KPEILHKLDLRFRSV 304 (706)
Q Consensus 230 ~~~~p~~~~~~~~g~~~~~~spd--g~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~---~~~~l~~~~~~~~~~ 304 (706)
.. ..+..+.|+|+ ++. |+... . .+.|.++|+ ..+ ....+......+..+
T Consensus 98 h~----------~~V~~v~~sp~~~~~~-l~sgs-~-----------dg~I~vwdl---~~~~~~~~~~~~~~~~~v~~l 151 (753)
T 3jro_A 98 HS----------ASVNSVQWAPHEYGPL-LLVAS-S-----------DGKVSVVEF---KENGTTSPIIIDAHAIGVNSA 151 (753)
T ss_dssp CS----------SCEEEEEECCGGGCSE-EEEEE-T-----------TSEEEEEEC---CSSSCCCCEEEECCSSCEEEE
T ss_pred CC----------CCeEEEEECCCCCCCE-EEEEe-C-----------CCcEEEEEe---ecCCCcceeEeecCCCceEEE
Confidence 11 22457899999 664 44331 1 124788888 333 233345567788899
Q ss_pred eecC-------------CCceEEEEeeccccceEEEEEcCCCCCCCceee--ecCcccccccCCCCCceEeccC---CCE
Q 005240 305 SWCD-------------DSLALVNETWYKTSQTRTWLVCPGSKDVAPRVL--FDRVFENVYSDPGSPMMTRTST---GTN 366 (706)
Q Consensus 305 ~wsp-------------Dg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~s~d---g~~ 366 (706)
.|+| |+..|+..+. ++..++| |+.++......+ ...... ....+.|+|+ |++
T Consensus 152 ~~~p~~~~~~~~~~~~~d~~~l~sgs~--dg~I~iw--d~~~~~~~~~~~~~~~~h~~------~V~~l~~sp~~~~~~~ 221 (753)
T 3jro_A 152 SWAPATIEEDGEHNGTKESRKFVTGGA--DNLVKIW--KYNSDAQTYVLESTLEGHSD------WVRDVAWSPTVLLRSY 221 (753)
T ss_dssp EECCCC---------CGGGCCEEEEET--TSCEEEE--EEETTTTEEEEEEEECCCSS------CEEEEEECCCCSSSEE
T ss_pred EecCcccccccccccCCCCCEEEEEEC--CCeEEEE--eccCCcccceeeeeecCCCC------cEEEEEeccCCCCCCE
Confidence 9999 5787877652 2344454 444421111111 111111 1234778999 777
Q ss_pred EEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCcee---eeecccchhhhhhhhhhccCCCceecccCCCEEEE
Q 005240 367 VIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKE---RIWESNREKYFETAVALVFGQGEEDINLNQLKILT 443 (706)
Q Consensus 367 l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~ 443 (706)
++..... + .+..+|+.+++.. .+.... ..........|+|||+.++.
T Consensus 222 l~s~s~D----g-----------------~I~iwd~~~~~~~~~~~~~~~~---------~~~~~v~~l~~spdg~~l~s 271 (753)
T 3jro_A 222 LASVSQD----R-----------------TCIIWTQDNEQGPWKKTLLKEE---------KFPDVLWRASWSLSGNVLAL 271 (753)
T ss_dssp EEEEESS----S-----------------CEEEEEESSSSSCCBCCBSSSS---------CCSSCCCCEEECTTTCCEEE
T ss_pred EEEEecC----C-----------------EEEEecCCCCCCcceeEEeccC---------CCCCceEEEEEcCCCCEEEE
Confidence 6665421 1 2444555444211 111110 01122335789999987776
Q ss_pred EEecCCCCcEEEEEECCC
Q 005240 444 SKESKTEITQYHILSWPL 461 (706)
Q Consensus 444 ~~~~~~~p~~v~~~~~~~ 461 (706)
...+. .|++|++.+
T Consensus 272 ~s~Dg----~I~vwd~~~ 285 (753)
T 3jro_A 272 SGGDN----KVTLWKENL 285 (753)
T ss_dssp ECSSS----CEECCBCCS
T ss_pred EcCCC----EEEEEecCC
Confidence 54433 488888874
|
| >2yys_A Proline iminopeptidase-related protein; TTHA1809, structural genomics, unknown function; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.77 E-value=6.9e-08 Score=97.03 Aligned_cols=119 Identities=19% Similarity=0.129 Sum_probs=81.9
Q ss_pred EEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCC-CcCCCCchHHHHHHHCCeEEEEcC
Q 005240 484 MIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPN-EFSGMTPTSSLIFLARRFAVLAGP 562 (706)
Q Consensus 484 ~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~G~~v~~~~ 562 (706)
+..+...+|..++...+-|++ -|.||++||.+.. .. .| ...+..| +.||.|+..+
T Consensus 4 ~~~~~~~~g~~l~~~~~G~~~--------~~~vvllHG~~~~-----------~~~~w----~~~~~~L-~~~~~vi~~D 59 (286)
T 2yys_A 4 EIGYVPVGEAELYVEDVGPVE--------GPALFVLHGGPGG-----------NAYVL----REGLQDY-LEGFRVVYFD 59 (286)
T ss_dssp EEEEEECSSCEEEEEEESCTT--------SCEEEEECCTTTC-----------CSHHH----HHHHGGG-CTTSEEEEEC
T ss_pred ceeEEeECCEEEEEEeecCCC--------CCEEEEECCCCCc-----------chhHH----HHHHHHh-cCCCEEEEEC
Confidence 334455688888877775532 2568889996421 11 11 1123334 5699999965
Q ss_pred CCCcCCCCCCCC-c----hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCC
Q 005240 563 SIPIIGEGDKLP-N----DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 636 (706)
Q Consensus 563 ~~~~~g~g~~~~-~----~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~ 636 (706)
-+ |+|.+.. . ....+...+|+.+.++.+ ..+++.++||||||.+++.++.++|+ ++++|..++.
T Consensus 60 l~---G~G~S~~~~~~~~~~~~~~~a~dl~~ll~~l------~~~~~~lvGhS~Gg~ia~~~a~~~p~-v~~lvl~~~~ 128 (286)
T 2yys_A 60 QR---GSGRSLELPQDPRLFTVDALVEDTLLLAEAL------GVERFGLLAHGFGAVVALEVLRRFPQ-AEGAILLAPW 128 (286)
T ss_dssp CT---TSTTSCCCCSCGGGCCHHHHHHHHHHHHHHT------TCCSEEEEEETTHHHHHHHHHHHCTT-EEEEEEESCC
T ss_pred CC---CCCCCCCCccCcccCcHHHHHHHHHHHHHHh------CCCcEEEEEeCHHHHHHHHHHHhCcc-hheEEEeCCc
Confidence 54 5565543 2 224566778887777765 23689999999999999999999999 9999998875
|
| >1a8s_A Chloroperoxidase F; haloperoxidase, oxidoreductase, propionate complex; 1.80A {Pseudomonas fluorescens} SCOP: c.69.1.12 | Back alignment and structure |
|---|
Probab=98.77 E-value=7.9e-08 Score=95.63 Aligned_cols=116 Identities=12% Similarity=0.130 Sum_probs=78.8
Q ss_pred EEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCc
Q 005240 487 YQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPI 566 (706)
Q Consensus 487 ~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~ 566 (706)
+++.||..+....+- . -|.||++||.+.. ...+ ...+..|++.||.|++.+.+
T Consensus 3 ~~~~~g~~l~y~~~g-------~---~~~vvllHG~~~~-----------~~~~----~~~~~~L~~~g~~vi~~D~~-- 55 (273)
T 1a8s_A 3 FTTRDGTQIYYKDWG-------S---GQPIVFSHGWPLN-----------ADSW----ESQMIFLAAQGYRVIAHDRR-- 55 (273)
T ss_dssp EECTTSCEEEEEEES-------C---SSEEEEECCTTCC-----------GGGG----HHHHHHHHHTTCEEEEECCT--
T ss_pred EecCCCcEEEEEEcC-------C---CCEEEEECCCCCc-----------HHHH----hhHHhhHhhCCcEEEEECCC--
Confidence 456688877655441 1 2568889996421 1111 13456788899999996665
Q ss_pred CCCCCCCCc--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhC-CCceeEEEeccCC
Q 005240 567 IGEGDKLPN--DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHA-PHLFCCGIARSGS 636 (706)
Q Consensus 567 ~g~g~~~~~--~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~-p~~~~a~v~~~~~ 636 (706)
|+|.+... ....+...+|+.++++++ +.+++.++||||||.+++.++.++ |++++++|..++.
T Consensus 56 -G~G~S~~~~~~~~~~~~~~dl~~~l~~l------~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~ 121 (273)
T 1a8s_A 56 -GHGRSSQPWSGNDMDTYADDLAQLIEHL------DLRDAVLFGFSTGGGEVARYIGRHGTARVAKAGLISAV 121 (273)
T ss_dssp -TSTTSCCCSSCCSHHHHHHHHHHHHHHT------TCCSEEEEEETHHHHHHHHHHHHHCSTTEEEEEEESCC
T ss_pred -CCCCCCCCCCCCCHHHHHHHHHHHHHHh------CCCCeEEEEeChHHHHHHHHHHhcCchheeEEEEEccc
Confidence 45555332 223556677777777654 346899999999999998877665 8999999988753
|
| >1wom_A RSBQ, sigma factor SIGB regulation protein RSBQ; alpha/beta hydrolase, signaling protein; 2.50A {Bacillus subtilis} PDB: 1wpr_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=5.2e-08 Score=97.01 Aligned_cols=98 Identities=16% Similarity=0.195 Sum_probs=66.6
Q ss_pred eEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCCCCc----h--hhHHHHHHHHH
Q 005240 514 PCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPN----D--RFVEQLVSSAE 587 (706)
Q Consensus 514 p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~----~--~~~~~~~~D~~ 587 (706)
|.||++||.+.. ...|. .....|+ .+|.|+..+.+ |+|.+... . ...+...+|+.
T Consensus 21 ~~vvllHG~~~~-----------~~~w~----~~~~~L~-~~~~vi~~Dl~---G~G~S~~~~~~~~~~~~~~~~a~dl~ 81 (271)
T 1wom_A 21 ASIMFAPGFGCD-----------QSVWN----AVAPAFE-EDHRVILFDYV---GSGHSDLRAYDLNRYQTLDGYAQDVL 81 (271)
T ss_dssp SEEEEECCTTCC-----------GGGGT----TTGGGGT-TTSEEEECCCS---CCSSSCCTTCCTTGGGSHHHHHHHHH
T ss_pred CcEEEEcCCCCc-----------hhhHH----HHHHHHH-hcCeEEEECCC---CCCCCCCCcccccccccHHHHHHHHH
Confidence 678889995321 11121 1223344 47999996554 55554321 1 23556677777
Q ss_pred HHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCC
Q 005240 588 AAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 636 (706)
Q Consensus 588 ~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~ 636 (706)
+.++.+ +.+++.++||||||.+++.++.++|++++++|..++.
T Consensus 82 ~~l~~l------~~~~~~lvGhS~GG~va~~~a~~~p~~v~~lvl~~~~ 124 (271)
T 1wom_A 82 DVCEAL------DLKETVFVGHSVGALIGMLASIRRPELFSHLVMVGPS 124 (271)
T ss_dssp HHHHHT------TCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred HHHHHc------CCCCeEEEEeCHHHHHHHHHHHhCHHhhcceEEEcCC
Confidence 766644 3468999999999999999999999999999988764
|
| >1ycd_A Hypothetical 27.3 kDa protein in AAP1-SMF2 intergenic region; esterase, lipase, serine hydrolase, structural genomics; HET: LI5; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.76 E-value=4.8e-09 Score=102.73 Aligned_cols=112 Identities=13% Similarity=0.050 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCC------CceeEEEeccCCCCC-----------------
Q 005240 583 VSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAP------HLFCCGIARSGSYNK----------------- 639 (706)
Q Consensus 583 ~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p------~~~~a~v~~~~~~d~----------------- 639 (706)
..|+.+++++|.+....+..+++|+|+||||.+|+.++.+.+ ..+++++..++....
T Consensus 83 ~~d~~~~~~~l~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~~~~ 162 (243)
T 1ycd_A 83 ELDISEGLKSVVDHIKANGPYDGIVGLSQGAALSSIITNKISELVPDHPQFKVSVVISGYSFTEPDPEHPGELRITEKFR 162 (243)
T ss_dssp GCCCHHHHHHHHHHHHHHCCCSEEEEETHHHHHHHHHHHHHHHHSTTCCCCSEEEEESCCCCEEECTTSTTCEEECGGGT
T ss_pred hhhHHHHHHHHHHHHHhcCCeeEEEEeChHHHHHHHHHHHHhhcccCCCCceEEEEecCCCCCCcccccccccccchhHH
Confidence 345556666666542234568999999999999999998742 257777777664311
Q ss_pred --------CCCCcc-----------c-hHHHHHHHHHhCC---CcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHhc
Q 005240 640 --------TLTPFG-----------F-QAERFFDALKGHG---ALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCL 696 (706)
Q Consensus 640 --------~~~~~~-----------~-~~~~~~~~l~~~~---~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~~~~l~ 696 (706)
...|.. . ..+++++.+...+ .....+++++++|.+... ....+.+.+||+++++
T Consensus 163 ~~~~~~~~~~~P~l~i~G~~D~~vp~~~~~~~~~~~~~~~g~~~~~~~~~~~~~gH~~~~~---~~~~~~i~~fl~~~~~ 239 (243)
T 1ycd_A 163 DSFAVKPDMKTKMIFIYGASDQAVPSVRSKYLYDIYLKAQNGNKEKVLAYEHPGGHMVPNK---KDIIRPIVEQITSSLQ 239 (243)
T ss_dssp TTTCCCTTCCCEEEEEEETTCSSSCHHHHHHHHHHHHHHTTTCTTTEEEEEESSSSSCCCC---HHHHHHHHHHHHHHHC
T ss_pred HhccCcccCCCCEEEEEeCCCCccCHHHHHHHHHHhhhhccccccccEEEecCCCCcCCch---HHHHHHHHHHHHHhhh
Confidence 001110 0 2236777776641 112445666789987642 3588999999999875
Q ss_pred c
Q 005240 697 S 697 (706)
Q Consensus 697 ~ 697 (706)
.
T Consensus 240 ~ 240 (243)
T 1ycd_A 240 E 240 (243)
T ss_dssp -
T ss_pred h
Confidence 4
|
| >2b61_A Homoserine O-acetyltransferase; acyl-enzyme, aspartate pathway, coenzyme A, structure-functi studies, alpha-beta hydrolase fold; 1.65A {Haemophilus influenzae} SCOP: c.69.1.40 | Back alignment and structure |
|---|
Probab=98.75 E-value=7.1e-08 Score=100.99 Aligned_cols=80 Identities=16% Similarity=0.241 Sum_probs=55.6
Q ss_pred HHHCCeEEEEcCCCCc-CCC-CCCC---------Cc---hhhHHHHHHHHHHHHHHHHHcCCCCCCcEE-EEEechHHHH
Q 005240 551 FLARRFAVLAGPSIPI-IGE-GDKL---------PN---DRFVEQLVSSAEAAVEEVVRRGVADPSRIA-VGGHSYGAFM 615 (706)
Q Consensus 551 l~~~G~~v~~~~~~~~-~g~-g~~~---------~~---~~~~~~~~~D~~~~~~~l~~~~~id~~~i~-i~G~S~GG~~ 615 (706)
|++.||.|++.+.+|. .+. +... .. ........+|+.++++.+ +..++. ++||||||.+
T Consensus 94 L~~~g~~vi~~D~~G~~g~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~l~~l------~~~~~~~lvGhS~Gg~i 167 (377)
T 2b61_A 94 LDTDRYFFISSNVLGGCKGTTGPSSINPQTGKPYGSQFPNIVVQDIVKVQKALLEHL------GISHLKAIIGGSFGGMQ 167 (377)
T ss_dssp EETTTCEEEEECCTTCSSSSSCTTSBCTTTSSBCGGGCCCCCHHHHHHHHHHHHHHT------TCCCEEEEEEETHHHHH
T ss_pred cccCCceEEEecCCCCCCCCCCCcccCccccccccccCCcccHHHHHHHHHHHHHHc------CCcceeEEEEEChhHHH
Confidence 5579999999777762 111 1100 00 113445556665555433 346887 9999999999
Q ss_pred HHHHHHhCCCceeEEEeccCC
Q 005240 616 TAHLLAHAPHLFCCGIARSGS 636 (706)
Q Consensus 616 a~~~~~~~p~~~~a~v~~~~~ 636 (706)
++.++.++|++++++|+.++.
T Consensus 168 a~~~a~~~p~~v~~lvl~~~~ 188 (377)
T 2b61_A 168 ANQWAIDYPDFMDNIVNLCSS 188 (377)
T ss_dssp HHHHHHHSTTSEEEEEEESCC
T ss_pred HHHHHHHCchhhheeEEeccC
Confidence 999999999999999999874
|
| >2cjp_A Epoxide hydrolase; HET: PG4 VPR; 1.95A {Solanum tuberosum} PDB: 3cxu_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=1e-07 Score=97.80 Aligned_cols=115 Identities=17% Similarity=0.174 Sum_probs=80.8
Q ss_pred cCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCC
Q 005240 490 KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGE 569 (706)
Q Consensus 490 ~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~ 569 (706)
.+|..++....- . -|.||++||.+.. ...| ...+..|++.||.|++++-+ |+
T Consensus 18 ~~g~~l~y~~~G-------~---g~~vvllHG~~~~-----------~~~w----~~~~~~L~~~g~~via~Dl~---G~ 69 (328)
T 2cjp_A 18 VNGLNMHLAELG-------E---GPTILFIHGFPEL-----------WYSW----RHQMVYLAERGYRAVAPDLR---GY 69 (328)
T ss_dssp ETTEEEEEEEEC-------S---SSEEEEECCTTCC-----------GGGG----HHHHHHHHTTTCEEEEECCT---TS
T ss_pred CCCcEEEEEEcC-------C---CCEEEEECCCCCc-----------hHHH----HHHHHHHHHCCcEEEEECCC---CC
Confidence 478787766541 1 2578899996421 1111 12345677789999996655 56
Q ss_pred CCCCCc------hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCC
Q 005240 570 GDKLPN------DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 636 (706)
Q Consensus 570 g~~~~~------~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~ 636 (706)
|.+... .......++|+.+.++.+.. +.+++.++||||||.+++.++.++|++++++|..++.
T Consensus 70 G~S~~~~~~~~~~~~~~~~a~dl~~~l~~l~~----~~~~~~lvGhS~Gg~ia~~~A~~~p~~v~~lvl~~~~ 138 (328)
T 2cjp_A 70 GDTTGAPLNDPSKFSILHLVGDVVALLEAIAP----NEEKVFVVAHDWGALIAWHLCLFRPDKVKALVNLSVH 138 (328)
T ss_dssp TTCBCCCTTCGGGGSHHHHHHHHHHHHHHHCT----TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred CCCCCcCcCCcccccHHHHHHHHHHHHHHhcC----CCCCeEEEEECHHHHHHHHHHHhChhheeEEEEEccC
Confidence 665432 12356778888888877621 2468999999999999999999999999999998754
|
| >3bf7_A Esterase YBFF; thioesterase, helical CAP, hydrolase; 1.10A {Escherichia coli} PDB: 3bf8_A | Back alignment and structure |
|---|
Probab=98.75 E-value=7e-08 Score=95.08 Aligned_cols=96 Identities=10% Similarity=-0.006 Sum_probs=65.6
Q ss_pred eEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCCCCc-hhhHHHHHHHHHHHHHH
Q 005240 514 PCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPN-DRFVEQLVSSAEAAVEE 592 (706)
Q Consensus 514 p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~-~~~~~~~~~D~~~~~~~ 592 (706)
|.||++||.+.. ...| ......|++. |.|+..+.+ |+|.+... ........+|+.+.++.
T Consensus 17 ~~vvllHG~~~~-----------~~~w----~~~~~~L~~~-~~via~Dl~---G~G~S~~~~~~~~~~~a~dl~~~l~~ 77 (255)
T 3bf7_A 17 SPIVLVHGLFGS-----------LDNL----GVLARDLVND-HNIIQVDVR---NHGLSPREPVMNYPAMAQDLVDTLDA 77 (255)
T ss_dssp CCEEEECCTTCC-----------TTTT----HHHHHHHTTT-SCEEEECCT---TSTTSCCCSCCCHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCccc-----------HhHH----HHHHHHHHhh-CcEEEecCC---CCCCCCCCCCcCHHHHHHHHHHHHHH
Confidence 568889996421 1111 1234455544 989886555 45555332 12345667777777776
Q ss_pred HHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEecc
Q 005240 593 VVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARS 634 (706)
Q Consensus 593 l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~ 634 (706)
+ +.+++.++||||||.+++.++.++|++++++|...
T Consensus 78 l------~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~ 113 (255)
T 3bf7_A 78 L------QIDKATFIGHSMGGKAVMALTALAPDRIDKLVAID 113 (255)
T ss_dssp H------TCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEES
T ss_pred c------CCCCeeEEeeCccHHHHHHHHHhCcHhhccEEEEc
Confidence 5 23689999999999999999999999999998864
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=98.74 E-value=3.9e-06 Score=86.00 Aligned_cols=224 Identities=9% Similarity=-0.033 Sum_probs=128.9
Q ss_pred ccceeEeecCCCCCCCCeeeee-----cCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCce-eec
Q 005240 4 FTGIGIHRLLPDDSLGPEKEVH-----GYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-KPL 77 (706)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~i~-----~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~-~~l 77 (706)
..+|.+.|.++ ++..+-. ..+-+.....+.+ ++++|+.+. .....|.++|+++++. ..+
T Consensus 16 ~~~l~~~d~~t----~~~~~~i~~~~n~~~lg~~~~~i~~--~~~~lyv~~---------~~~~~v~viD~~t~~~~~~i 80 (328)
T 3dsm_A 16 NATLSYYDPAT----CEVENEVFYRANGFKLGDVAQSMVI--RDGIGWIVV---------NNSHVIFAIDINTFKEVGRI 80 (328)
T ss_dssp CBEEEEEETTT----TEEECSHHHHHHSSCCBSCEEEEEE--ETTEEEEEE---------GGGTEEEEEETTTCCEEEEE
T ss_pred CceEEEEECCC----CEEhhhhHhhhcCcccCccceEEEE--ECCEEEEEE---------cCCCEEEEEECcccEEEEEc
Confidence 45788888766 6544311 0011212333444 677775543 3346899999998876 445
Q ss_pred ccCCCccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccc
Q 005240 78 FESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTA 157 (706)
Q Consensus 78 t~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 157 (706)
.... .+..+++++|| .|++.... ..
T Consensus 81 ~~~~------~p~~i~~~~~g-~lyv~~~~------------------------------------------------~~ 105 (328)
T 3dsm_A 81 TGFT------SPRYIHFLSDE-KAYVTQIW------------------------------------------------DY 105 (328)
T ss_dssp ECCS------SEEEEEEEETT-EEEEEEBS------------------------------------------------CS
T ss_pred CCCC------CCcEEEEeCCC-eEEEEECC------------------------------------------------CC
Confidence 3221 25678899999 56654210 15
Q ss_pred eEEEEcc-CCCce-ecCCCc------eEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCC
Q 005240 158 QLVLGSL-DGTAK-DFGTPA------VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPP 229 (706)
Q Consensus 158 ~l~~~~l-~g~~~-~lt~~~------~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 229 (706)
.|+++|+ +++.. .+..+. ....+++ ++++|++..... ...|.++|+.++++.......
T Consensus 106 ~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~-----------~~~v~viD~~t~~~~~~i~~g- 171 (328)
T 3dsm_A 106 RIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSY-----------QNRILKIDTETDKVVDELTIG- 171 (328)
T ss_dssp EEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTT-----------CCEEEEEETTTTEEEEEEECS-
T ss_pred eEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCC-----------CCEEEEEECCCCeEEEEEEcC-
Confidence 7888888 44433 333222 4556666 677887664311 247999999876654322211
Q ss_pred CCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeec--ccccccceec
Q 005240 230 AEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL--DLRFRSVSWC 307 (706)
Q Consensus 230 ~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~--~~~~~~~~ws 307 (706)
..+..+.++|||+ +++....+..... .......|+++|. +++++...... ......++|+
T Consensus 172 ------------~~p~~i~~~~dG~--l~v~~~~~~~~~~-~~~~~~~v~~id~---~t~~v~~~~~~~~g~~p~~la~~ 233 (328)
T 3dsm_A 172 ------------IQPTSLVMDKYNK--MWTITDGGYEGSP-YGYEAPSLYRIDA---ETFTVEKQFKFKLGDWPSEVQLN 233 (328)
T ss_dssp ------------SCBCCCEECTTSE--EEEEBCCBCTTCS-SCBCCCEEEEEET---TTTEEEEEEECCTTCCCEEEEEC
T ss_pred ------------CCccceEEcCCCC--EEEEECCCccCCc-cccCCceEEEEEC---CCCeEEEEEecCCCCCceeEEEe
Confidence 1133678899987 6555322111000 0001246899998 56655432222 2356788999
Q ss_pred CCCceEEEEeeccccceEEEEEcCCCCC
Q 005240 308 DDSLALVNETWYKTSQTRTWLVCPGSKD 335 (706)
Q Consensus 308 pDg~~l~~~~~~~~~~~~l~~~d~~~~~ 335 (706)
||++.|++.. . .|+++|+++++
T Consensus 234 ~d~~~lyv~~-~-----~v~~~d~~t~~ 255 (328)
T 3dsm_A 234 GTRDTLYWIN-N-----DIWRMPVEADR 255 (328)
T ss_dssp TTSCEEEEES-S-----SEEEEETTCSS
T ss_pred cCCCEEEEEc-c-----EEEEEECCCCc
Confidence 9999888753 1 69999998853
|
| >1mtz_A Proline iminopeptidase; alpha-beta hydrolase, CAP domain, caged active site, prolyl peptidase; 1.80A {Thermoplasma acidophilum} SCOP: c.69.1.7 PDB: 1mt3_A 1mu0_A* 1xrr_A 1xrq_A 1xro_A 1xrn_A 1xrm_A 1xrp_A 1xrl_A* 1xqw_A* 1xqx_A* 1xqy_A 1xqv_A | Back alignment and structure |
|---|
Probab=98.74 E-value=7.3e-08 Score=96.98 Aligned_cols=118 Identities=17% Similarity=0.123 Sum_probs=79.2
Q ss_pred cCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCC
Q 005240 490 KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGE 569 (706)
Q Consensus 490 ~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~ 569 (706)
.+|..+....+-+. + + .|.||++||++.. ...+ +.....+++.||.|+..+.+ |+
T Consensus 12 ~~g~~l~~~~~g~~---~-~---~~~vvllHG~~~~-----------~~~~----~~~~~~l~~~g~~vi~~D~~---G~ 66 (293)
T 1mtz_A 12 VNGIYIYYKLCKAP---E-E---KAKLMTMHGGPGM-----------SHDY----LLSLRDMTKEGITVLFYDQF---GC 66 (293)
T ss_dssp ETTEEEEEEEECCS---S-C---SEEEEEECCTTTC-----------CSGG----GGGGGGGGGGTEEEEEECCT---TS
T ss_pred ECCEEEEEEEECCC---C-C---CCeEEEEeCCCCc-----------chhH----HHHHHHHHhcCcEEEEecCC---CC
Confidence 36777776655331 1 1 2568889996421 0111 11123346789999996665 55
Q ss_pred CCCCCch---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCC
Q 005240 570 GDKLPND---RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSY 637 (706)
Q Consensus 570 g~~~~~~---~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~ 637 (706)
|.+.... ...+...+|+.+.++.+. +.+++.++||||||.+++.++.++|++++++|+.++..
T Consensus 67 G~S~~~~~~~~~~~~~~~dl~~~~~~l~-----~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~ 132 (293)
T 1mtz_A 67 GRSEEPDQSKFTIDYGVEEAEALRSKLF-----GNEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSGGLS 132 (293)
T ss_dssp TTSCCCCGGGCSHHHHHHHHHHHHHHHH-----TTCCEEEEEETHHHHHHHHHHHHHGGGEEEEEEESCCS
T ss_pred ccCCCCCCCcccHHHHHHHHHHHHHHhc-----CCCcEEEEEecHHHHHHHHHHHhCchhhheEEecCCcc
Confidence 6554322 234566778777777662 12589999999999999999999999999999998764
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.73 E-value=4.1e-06 Score=82.92 Aligned_cols=224 Identities=11% Similarity=0.081 Sum_probs=132.0
Q ss_pred ceEEEEccCC-Ccee------cCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCC
Q 005240 157 AQLVLGSLDG-TAKD------FGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLP 228 (706)
Q Consensus 157 ~~l~~~~l~g-~~~~------lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 228 (706)
..|++++++| ..+. +... .....++|+|+++.|+++... ...|++++++++..+.+....
T Consensus 10 ~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~------------~~~I~~~~~~g~~~~~~~~~~ 77 (267)
T 1npe_A 10 GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDIS------------EPSIGRASLHGGEPTTIIRQD 77 (267)
T ss_dssp EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETT------------TTEEEEEESSSCCCEEEECTT
T ss_pred CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECC------------CCEEEEEecCCCCcEEEEECC
Confidence 5789999977 3321 1111 356789999999999887654 248999999987655543221
Q ss_pred CCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecc-cccccceec
Q 005240 229 PAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLD-LRFRSVSWC 307 (706)
Q Consensus 229 ~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~-~~~~~~~ws 307 (706)
. ..+..+++.|++.. ||+... . ...|++++. ++...+.+.... .....++++
T Consensus 78 ~------------~~p~~ia~d~~~~~-lyv~d~-~----------~~~I~~~~~---~g~~~~~~~~~~~~~P~~i~vd 130 (267)
T 1npe_A 78 L------------GSPEGIALDHLGRT-IFWTDS-Q----------LDRIEVAKM---DGTQRRVLFDTGLVNPRGIVTD 130 (267)
T ss_dssp C------------CCEEEEEEETTTTE-EEEEET-T----------TTEEEEEET---TSCSCEEEECSSCSSEEEEEEE
T ss_pred C------------CCccEEEEEecCCe-EEEEEC-C----------CCEEEEEEc---CCCCEEEEEECCCCCccEEEEe
Confidence 1 12447789998776 776632 1 125778887 555445554322 345677899
Q ss_pred CCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCC
Q 005240 308 DDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRG 387 (706)
Q Consensus 308 pDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g 387 (706)
|++..|+++.... ....|+++++++. ..+.+...... .| ..+++++++++|++....
T Consensus 131 ~~~g~lyv~~~~~-~~~~I~~~~~dg~--~~~~~~~~~~~----~P--~gia~d~~~~~lyv~d~~-------------- 187 (267)
T 1npe_A 131 PVRGNLYWTDWNR-DNPKIETSHMDGT--NRRILAQDNLG----LP--NGLTFDAFSSQLCWVDAG-------------- 187 (267)
T ss_dssp TTTTEEEEEECCS-SSCEEEEEETTSC--CCEEEECTTCS----CE--EEEEEETTTTEEEEEETT--------------
T ss_pred eCCCEEEEEECCC-CCcEEEEEecCCC--CcEEEEECCCC----CC--cEEEEcCCCCEEEEEECC--------------
Confidence 9887787764221 2457999998873 23333222111 11 136678998888887521
Q ss_pred CCCCCCCCceeeeecCCCceeeeecccchhhhhhhhhhccCCCceecccCCCEEEEEEecCCCCcEEEEEECCCCcee
Q 005240 388 FTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSS 465 (706)
Q Consensus 388 ~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~p~~v~~~~~~~~~~~ 465 (706)
...|+.++++++..+.+.... .....+..|+..|+++... ...|+++|..+++..
T Consensus 188 ------~~~I~~~~~~g~~~~~~~~~~--------------~~P~gi~~d~~~lyva~~~---~~~v~~~d~~~g~~~ 242 (267)
T 1npe_A 188 ------THRAECLNPAQPGRRKVLEGL--------------QYPFAVTSYGKNLYYTDWK---TNSVIAMDLAISKEM 242 (267)
T ss_dssp ------TTEEEEEETTEEEEEEEEECC--------------CSEEEEEEETTEEEEEETT---TTEEEEEETTTTEEE
T ss_pred ------CCEEEEEecCCCceEEEecCC--------------CCceEEEEeCCEEEEEECC---CCeEEEEeCCCCCce
Confidence 224777887654433332211 0112344566666654322 246888887776543
|
| >3bwx_A Alpha/beta hydrolase; YP_496220.1, joint center for structural genomics, protein structure initiative, PSI-2; HET: MSE; 1.50A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=98.73 E-value=9.6e-08 Score=95.75 Aligned_cols=121 Identities=20% Similarity=0.177 Sum_probs=83.3
Q ss_pred eEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEc
Q 005240 482 KEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAG 561 (706)
Q Consensus 482 ~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~ 561 (706)
.+...+...+|..++...+-+++ . -|.||++||.+.. ...| ...+..|++ ||.|+.+
T Consensus 5 ~~~~~~~~~~g~~l~~~~~g~~~---~----~~~vvllHG~~~~-----------~~~~----~~~~~~L~~-~~~vi~~ 61 (285)
T 3bwx_A 5 YEDRYWTSSDGLRLHFRAYEGDI---S----RPPVLCLPGLTRN-----------ARDF----EDLATRLAG-DWRVLCP 61 (285)
T ss_dssp SEEEEEECTTSCEEEEEEECBCT---T----SCCEEEECCTTCC-----------GGGG----HHHHHHHBB-TBCEEEE
T ss_pred cccCeeecCCCceEEEEEcCCCC---C----CCcEEEECCCCcc-----------hhhH----HHHHHHhhc-CCEEEee
Confidence 35566777799999988875542 1 2568889996421 1111 123444544 9999986
Q ss_pred CCCCcCCCCCCCCc----hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEecc
Q 005240 562 PSIPIIGEGDKLPN----DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARS 634 (706)
Q Consensus 562 ~~~~~~g~g~~~~~----~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~ 634 (706)
+.+ |+|.+... ....+...+|+.+.++.+ ..+++.++||||||.+++.++.++|++++++|...
T Consensus 62 Dl~---G~G~S~~~~~~~~~~~~~~a~dl~~~l~~l------~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~ 129 (285)
T 3bwx_A 62 EMR---GRGDSDYAKDPMTYQPMQYLQDLEALLAQE------GIERFVAIGTSLGGLLTMLLAAANPARIAAAVLND 129 (285)
T ss_dssp CCT---TBTTSCCCSSGGGCSHHHHHHHHHHHHHHH------TCCSEEEEEETHHHHHHHHHHHHCGGGEEEEEEES
T ss_pred cCC---CCCCCCCCCCccccCHHHHHHHHHHHHHhc------CCCceEEEEeCHHHHHHHHHHHhCchheeEEEEec
Confidence 655 55655432 123456677888877765 23689999999999999999999999999998853
|
| >2qvb_A Haloalkane dehalogenase 3; RV2579, alpha-beta hydrolase protei structural genomics consortium, TBSGC, hydrolase; 1.19A {Mycobacterium tuberculosis} PDB: 2o2i_A 2o2h_A | Back alignment and structure |
|---|
Probab=98.72 E-value=1.6e-07 Score=94.23 Aligned_cols=113 Identities=8% Similarity=-0.109 Sum_probs=76.4
Q ss_pred cCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCC
Q 005240 490 KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGE 569 (706)
Q Consensus 490 ~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~ 569 (706)
.+|..+....+-+ -|+||++||.+.. ...+. ..+..|+ .+|.|+..+.+ |+
T Consensus 15 ~~g~~l~~~~~g~----------~~~vv~lHG~~~~-----------~~~~~----~~~~~l~-~~~~vi~~D~~---G~ 65 (297)
T 2qvb_A 15 IAGKRMAYIDEGK----------GDAIVFQHGNPTS-----------SYLWR----NIMPHLE-GLGRLVACDLI---GM 65 (297)
T ss_dssp ETTEEEEEEEESS----------SSEEEEECCTTCC-----------GGGGT----TTGGGGT-TSSEEEEECCT---TS
T ss_pred ECCEEEEEEecCC----------CCeEEEECCCCch-----------HHHHH----HHHHHHh-hcCeEEEEcCC---CC
Confidence 4788887665521 2679999997521 11121 1223343 45888886665 44
Q ss_pred CCCCCch------hhHHHHHHHHHHHHHHHHHcCCCCC-CcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCC
Q 005240 570 GDKLPND------RFVEQLVSSAEAAVEEVVRRGVADP-SRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSY 637 (706)
Q Consensus 570 g~~~~~~------~~~~~~~~D~~~~~~~l~~~~~id~-~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~ 637 (706)
|.+.... .......+|+.++++.+ +. .++.++|||+||.+++.++.++|++++++|+.+|..
T Consensus 66 G~S~~~~~~~~~~~~~~~~~~~~~~~l~~~------~~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~ 134 (297)
T 2qvb_A 66 GASDKLSPSGPDRYSYGEQRDFLFALWDAL------DLGDHVVLVLHDWGSALGFDWANQHRDRVQGIAFMEAIV 134 (297)
T ss_dssp TTSCCCSSCSTTSSCHHHHHHHHHHHHHHT------TCCSCEEEEEEEHHHHHHHHHHHHSGGGEEEEEEEEECC
T ss_pred CCCCCCCCccccCcCHHHHHHHHHHHHHHc------CCCCceEEEEeCchHHHHHHHHHhChHhhheeeEecccc
Confidence 4443321 23556677777766654 34 689999999999999999999999999999998865
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.72 E-value=5.1e-07 Score=93.34 Aligned_cols=127 Identities=4% Similarity=-0.126 Sum_probs=68.7
Q ss_pred cCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCccc-----ccccCCCCC-ceEeccCCCEEEEeeeccCCcceE
Q 005240 307 CDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFE-----NVYSDPGSP-MMTRTSTGTNVIAKIKKENDEQIY 380 (706)
Q Consensus 307 spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~-----~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~~~~~ 380 (706)
++++..+++.+. ..++.+|+.+.. ...+-...+. .....|... .+.++|||+++++..... . +..
T Consensus 219 ~~~~~~~~~vs~-----~~V~viD~~~~~--~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~-~-~~~ 289 (368)
T 1mda_H 219 ANYPGMLVWAVA-----SSILQGDIPAAG--ATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEH-S-RSC 289 (368)
T ss_dssp ETTTTEEEECBS-----SCCEEEECCSSC--CEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEEC-S-SCT
T ss_pred cccCCEEEEEcC-----CEEEEEECCCCc--ceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccc-c-Ccc
Confidence 677777777653 458899987632 2222111110 001112221 256799999888764210 0 000
Q ss_pred EEEecCCCCCCCCCCceeeeecCCCceeeeecccchhhhhhhhhhccCCCceecccCCCEEEEEEecCCCCcEEEEEECC
Q 005240 381 ILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWP 460 (706)
Q Consensus 381 ~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~p~~v~~~~~~ 460 (706)
.+. ...+..+|+++++..+-+..... -+.+.|++||++++++.... ...|.++|++
T Consensus 290 -----~~~-----~~~~~ViD~~t~~vv~~i~vg~~------------p~gi~~s~Dg~~l~va~~~~--~~~VsVID~~ 345 (368)
T 1mda_H 290 -----LAA-----AENTSSVTASVGQTSGPISNGHD------------SDAIIAAQDGASDNYANSAG--TEVLDIYDAA 345 (368)
T ss_dssp -----TSC-----EEEEEEEESSSCCEEECCEEEEE------------ECEEEECCSSSCEEEEEETT--TTEEEEEESS
T ss_pred -----ccc-----CCCEEEEECCCCeEEEEEECCCC------------cceEEECCCCCEEEEEccCC--CCeEEEEECC
Confidence 000 00233789888876554433221 12468999999877765511 2569999998
Q ss_pred CCceeE
Q 005240 461 LKKSSQ 466 (706)
Q Consensus 461 ~~~~~~ 466 (706)
+++...
T Consensus 346 t~kvv~ 351 (368)
T 1mda_H 346 SDQDQS 351 (368)
T ss_dssp SCEEEE
T ss_pred CCcEEE
Confidence 876543
|
| >1a8q_A Bromoperoxidase A1; haloperoxidase, oxidoreductase; 1.75A {Streptomyces aureofaciens} SCOP: c.69.1.12 | Back alignment and structure |
|---|
Probab=98.71 E-value=1.5e-07 Score=93.68 Aligned_cols=116 Identities=11% Similarity=0.109 Sum_probs=78.3
Q ss_pred EEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCc
Q 005240 487 YQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPI 566 (706)
Q Consensus 487 ~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~ 566 (706)
+++.||..+....+- + -|.||++||.+.. ...+ ...+..|++.||.|++.+.+
T Consensus 3 ~~~~~g~~l~y~~~g-------~---g~~vvllHG~~~~-----------~~~w----~~~~~~l~~~g~~vi~~D~~-- 55 (274)
T 1a8q_A 3 CTTRDGVEIFYKDWG-------Q---GRPVVFIHGWPLN-----------GDAW----QDQLKAVVDAGYRGIAHDRR-- 55 (274)
T ss_dssp EECTTSCEEEEEEEC-------S---SSEEEEECCTTCC-----------GGGG----HHHHHHHHHTTCEEEEECCT--
T ss_pred EEccCCCEEEEEecC-------C---CceEEEECCCcch-----------HHHH----HHHHHHHHhCCCeEEEEcCC--
Confidence 455688777655441 1 2468889996421 0111 13456788899999996655
Q ss_pred CCCCCCCCc--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhC-CCceeEEEeccCC
Q 005240 567 IGEGDKLPN--DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHA-PHLFCCGIARSGS 636 (706)
Q Consensus 567 ~g~g~~~~~--~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~-p~~~~a~v~~~~~ 636 (706)
|+|.+... ........+|+.+.++.+ +.+++.++||||||.+++.++.++ |++++++|+.++.
T Consensus 56 -G~G~S~~~~~~~~~~~~~~dl~~~l~~l------~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~ 121 (274)
T 1a8q_A 56 -GHGHSTPVWDGYDFDTFADDLNDLLTDL------DLRDVTLVAHSMGGGELARYVGRHGTGRLRSAVLLSAI 121 (274)
T ss_dssp -TSTTSCCCSSCCSHHHHHHHHHHHHHHT------TCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCC
T ss_pred -CCCCCCCCCCCCcHHHHHHHHHHHHHHc------CCCceEEEEeCccHHHHHHHHHHhhhHheeeeeEecCC
Confidence 55555332 223456677777777654 346899999999999998877665 8999999988753
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.70 E-value=2.8e-06 Score=89.10 Aligned_cols=179 Identities=11% Similarity=0.077 Sum_probs=121.6
Q ss_pred eeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhc
Q 005240 62 LRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNL 141 (706)
Q Consensus 62 ~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (706)
..|+.+++++++...+...... ...++|.+.+..||+.-.
T Consensus 96 ~~I~~i~~~~~~~~~~~~~~~~-----~~gl~~d~~~~~ly~~D~----------------------------------- 135 (386)
T 3v65_B 96 IDIRQVLPHRSEYTLLLNNLEN-----AIALDFHHRRELVFWSDV----------------------------------- 135 (386)
T ss_dssp SCEEEECTTSCCCEEEECSCSC-----EEEEEEETTTTEEEEEET-----------------------------------
T ss_pred ccceeeccCCCcEEEEecCCCc-----cEEEEEecCCCeEEEEeC-----------------------------------
Confidence 6789999988877666543322 567899988888887621
Q ss_pred cCCchhhhhhhhcccceEEEEccCC-Cceec-CCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCC
Q 005240 142 LKDEYDESLFDYYTTAQLVLGSLDG-TAKDF-GTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG 218 (706)
Q Consensus 142 ~~~~~d~~~~~~~~~~~l~~~~l~g-~~~~l-t~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 218 (706)
....|++++++| ..+.+ ..+ .....+++.+.+..|+++.... ..|+++++++
T Consensus 136 -------------~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~------------~~I~~~~~dg 190 (386)
T 3v65_B 136 -------------TLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGT------------SRIEVANLDG 190 (386)
T ss_dssp -------------TTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTT------------TEEEECBTTS
T ss_pred -------------CCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCC------------CeEEEEeCCC
Confidence 126899999977 44443 223 4556788999889998876542 4799999998
Q ss_pred CeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeec-
Q 005240 219 KLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL- 297 (706)
Q Consensus 219 ~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~- 297 (706)
+..+.+..... ..+..++..|++.. |||.... . ...|++++. ++...+.+...
T Consensus 191 ~~~~~l~~~~l------------~~P~giavdp~~g~-ly~td~~---~-------~~~I~r~~~---dG~~~~~~~~~~ 244 (386)
T 3v65_B 191 AHRKVLLWQSL------------EKPRAIALHPMEGT-IYWTDWG---N-------TPRIEASSM---DGSGRRIIADTH 244 (386)
T ss_dssp CSCEEEECSSC------------SCEEEEEEETTTTE-EEEEECS---S-------SCEEEEEET---TSCSCEEEECSS
T ss_pred CceEEeecCCC------------CCCcEEEEEcCCCe-EEEeccC---C-------CCEEEEEeC---CCCCcEEEEECC
Confidence 76665543321 12447889988876 8876321 1 135888888 56555555433
Q ss_pred ccccccceecCCCceEEEEeeccccceEEEEEcCCCC
Q 005240 298 DLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK 334 (706)
Q Consensus 298 ~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~ 334 (706)
-.....++|+|++..|+++.. ...+|+++++++.
T Consensus 245 ~~~PnGlavd~~~~~lY~aD~---~~~~I~~~d~dG~ 278 (386)
T 3v65_B 245 LFWPNGLTIDYAGRRMYWVDA---KHHVIERANLDGS 278 (386)
T ss_dssp CSCEEEEEEEGGGTEEEEEET---TTTEEEEECTTSC
T ss_pred CCCeeeEEEeCCCCEEEEEEC---CCCEEEEEeCCCC
Confidence 334567899999888988742 3457999999873
|
| >1azw_A Proline iminopeptidase; aminopeptidase, serine protease, xanthomonas campestris; 2.70A {Xanthomonas citri} SCOP: c.69.1.7 | Back alignment and structure |
|---|
Probab=98.70 E-value=1.4e-07 Score=95.91 Aligned_cols=120 Identities=15% Similarity=0.050 Sum_probs=78.1
Q ss_pred EEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCC
Q 005240 484 MIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPS 563 (706)
Q Consensus 484 ~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~ 563 (706)
...++..+|..++....-+++ -|.||++||++.. +.. ..+...+...||.|+..+.
T Consensus 13 ~~~~~~~~g~~l~y~~~G~~~--------g~pvvllHG~~~~----------~~~------~~~~~~~~~~~~~vi~~D~ 68 (313)
T 1azw_A 13 QGSLKVDDRHTLYFEQCGNPH--------GKPVVMLHGGPGG----------GCN------DKMRRFHDPAKYRIVLFDQ 68 (313)
T ss_dssp EEEEECSSSCEEEEEEEECTT--------SEEEEEECSTTTT----------CCC------GGGGGGSCTTTEEEEEECC
T ss_pred cceEEcCCCCEEEEEecCCCC--------CCeEEEECCCCCc----------ccc------HHHHHhcCcCcceEEEECC
Confidence 344555578888766554321 2457889997421 000 0111223357999999665
Q ss_pred CCcCCCCCCCCc----hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCC
Q 005240 564 IPIIGEGDKLPN----DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 636 (706)
Q Consensus 564 ~~~~g~g~~~~~----~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~ 636 (706)
+ |+|++... .......++|+.+.++.+ .-+++.++||||||.+++.++.++|++++++|+.++.
T Consensus 69 ~---G~G~S~~~~~~~~~~~~~~~~dl~~l~~~l------~~~~~~lvGhSmGg~ia~~~a~~~p~~v~~lvl~~~~ 136 (313)
T 1azw_A 69 R---GSGRSTPHADLVDNTTWDLVADIERLRTHL------GVDRWQVFGGSWGSTLALAYAQTHPQQVTELVLRGIF 136 (313)
T ss_dssp T---TSTTSBSTTCCTTCCHHHHHHHHHHHHHHT------TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred C---CCcCCCCCcccccccHHHHHHHHHHHHHHh------CCCceEEEEECHHHHHHHHHHHhChhheeEEEEeccc
Confidence 5 56665432 123455666766655543 2358999999999999999999999999999987653
|
| >1wm1_A Proline iminopeptidase; complex with inhibitor, hydrolase; HET: PTB; 2.10A {Serratia marcescens} SCOP: c.69.1.7 PDB: 1qtr_A* 1x2b_A* 1x2e_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=1.5e-07 Score=95.93 Aligned_cols=119 Identities=18% Similarity=0.111 Sum_probs=77.0
Q ss_pred EEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCC
Q 005240 484 MIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPS 563 (706)
Q Consensus 484 ~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~ 563 (706)
...+...+|..++....-+++ -|.||++||++... .+ ..+...+...||.|+..+.
T Consensus 16 ~~~~~~~~g~~l~~~~~g~~~--------g~~vvllHG~~~~~---------~~-------~~~~~~~~~~~~~vi~~D~ 71 (317)
T 1wm1_A 16 SGWLDTGDGHRIYWELSGNPN--------GKPAVFIHGGPGGG---------IS-------PHHRQLFDPERYKVLLFDQ 71 (317)
T ss_dssp EEEEECSSSCEEEEEEEECTT--------SEEEEEECCTTTCC---------CC-------GGGGGGSCTTTEEEEEECC
T ss_pred eeEEEcCCCcEEEEEEcCCCC--------CCcEEEECCCCCcc---------cc-------hhhhhhccccCCeEEEECC
Confidence 344555588888766554321 14578899975210 00 0112233357999999665
Q ss_pred CCcCCCCCCCCc----hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccC
Q 005240 564 IPIIGEGDKLPN----DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSG 635 (706)
Q Consensus 564 ~~~~g~g~~~~~----~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~ 635 (706)
+ |+|.+... ........+|+.+.++.+ +.+++.++||||||.+++.++.++|++++++|+.++
T Consensus 72 ~---G~G~S~~~~~~~~~~~~~~~~dl~~l~~~l------~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~ 138 (317)
T 1wm1_A 72 R---GCGRSRPHASLDNNTTWHLVADIERLREMA------GVEQWLVFGGSWGSTLALAYAQTHPERVSEMVLRGI 138 (317)
T ss_dssp T---TSTTCBSTTCCTTCSHHHHHHHHHHHHHHT------TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESC
T ss_pred C---CCCCCCCCcccccccHHHHHHHHHHHHHHc------CCCcEEEEEeCHHHHHHHHHHHHCChheeeeeEecc
Confidence 5 55655332 123445566666655443 346899999999999999999999999999998764
|
| >3bix_A Neuroligin-1, neuroligin I; esterase domain, alpha-beta hydrolase, cell adhesion, cell J glycoprotein, membrane, postsynaptic cell membrane; HET: NAG; 1.80A {Rattus norvegicus} PDB: 3biw_A* 3b3q_A* 3be8_A* 2wqz_A* 2xb6_A* 2vh8_A 3bl8_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=1.1e-08 Score=112.54 Aligned_cols=132 Identities=20% Similarity=0.182 Sum_probs=86.5
Q ss_pred ccCCeEEEEEEEecCCCCC-CCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHH-CCeEEEEcCCCCc
Q 005240 489 RKDGVPLTATLYLPPGYDQ-SKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA-RRFAVLAGPSIPI 566 (706)
Q Consensus 489 ~~dg~~i~~~l~~P~~~~~-~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~G~~v~~~~~~~~ 566 (706)
++|.. ...+|.|..... ....++|+|||+|||++..|+. ..+. ...|++ .|++|+.++||-.
T Consensus 108 sEdcL--~l~v~~P~~~~~~~~~~~~Pv~v~iHGGg~~~g~~--------~~~~------~~~la~~~~~vvv~~~YRl~ 171 (574)
T 3bix_A 108 SEDCL--YLNIYVPTEDDIRDSGGPKPVMVYIHGGSYMEGTG--------NLYD------GSVLASYGNVIVITVNYRLG 171 (574)
T ss_dssp CSCCC--EEEEEEEC--------CCEEEEEECCCSSSSSCCG--------GGSC------CHHHHHHHTCEEEEECCCCH
T ss_pred CCcCC--EEEEEECCCCCcCCCCCCCcEEEEECCCcccCCCC--------CccC------chhhhccCCEEEEEeCCcCc
Confidence 45664 445888976421 0123589999999998754322 1111 134565 4799999888732
Q ss_pred -CCCCCCCCchhhHHHHHHHHHHHHHHHHHc--CC-CCCCcEEEEEechHHHHHHHHHHhCC---CceeEEEeccCC
Q 005240 567 -IGEGDKLPNDRFVEQLVSSAEAAVEEVVRR--GV-ADPSRIAVGGHSYGAFMTAHLLAHAP---HLFCCGIARSGS 636 (706)
Q Consensus 567 -~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~--~~-id~~~i~i~G~S~GG~~a~~~~~~~p---~~~~a~v~~~~~ 636 (706)
.|+.........++..+.|+.+|++|++++ .+ .||+||.|+|.|+||.+++.++.... .+|+++|+.+|.
T Consensus 172 ~~Gfl~~~~~~~~~n~gl~D~~~al~wv~~ni~~fggdp~~vti~G~SaGg~~~~~~~~~~~~~~glf~~aI~~Sg~ 248 (574)
T 3bix_A 172 VLGFLSTGDQAAKGNYGLLDLIQALRWTSENIGFFGGDPLRITVFGSGAGGSCVNLLTLSHYSEKGLFQRAIAQSGT 248 (574)
T ss_dssp HHHHCCCSSSSCCCCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHTCTTSCTTSCCEEEEESCC
T ss_pred ccccCcCCCCCCCCcccHHHHHHHHHHHHHHHHHhCCCchhEEEEeecccHHHHHHHhhCCCcchhHHHHHHHhcCC
Confidence 233221111111234589999999999985 23 79999999999999999999886543 579999998874
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.70 E-value=6.6e-07 Score=97.77 Aligned_cols=143 Identities=10% Similarity=-0.047 Sum_probs=80.8
Q ss_pred ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCC-ee-EEcccCCCCCCCCcccCccCCCCcce--eee
Q 005240 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK-LV-RELCDLPPAEDIPVCYNSVREGMRSI--SWR 250 (706)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~-~~l~~~~~~~~~p~~~~~~~~g~~~~--~~s 250 (706)
..+..++|+|++ .|+..+.+ ..|.+||+.++ .. ..+..+. ..+..+ .|+
T Consensus 267 ~~v~sv~~s~~~-~lasgs~D-------------gtV~lWD~~~~~~~~~~~~~H~-------------~~V~sv~~~~s 319 (524)
T 2j04_B 267 SLITTFDFLSPT-TVVCGFKN-------------GFVAEFDLTDPEVPSFYDQVHD-------------SYILSVSTAYS 319 (524)
T ss_dssp TCEEEEEESSSS-EEEEEETT-------------SEEEEEETTBCSSCSEEEECSS-------------SCEEEEEEECC
T ss_pred CCEEEEEecCCC-eEEEEeCC-------------CEEEEEECCCCCCceEEeeccc-------------ccEEEEEEEcC
Confidence 578899999875 56544433 38999999854 22 1222221 124455 678
Q ss_pred cCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCC-ceEEeecc--cccccceecCCCceEEEEeeccccceEEE
Q 005240 251 ADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEK-PEILHKLD--LRFRSVSWCDDSLALVNETWYKTSQTRTW 327 (706)
Q Consensus 251 pdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-~~~l~~~~--~~~~~~~wspDg~~l~~~~~~~~~~~~l~ 327 (706)
|+|...|+ .... ...|.+||+ ..++ +..+.... ..+..++|+||++.|+..+.. . .|.
T Consensus 320 ~~g~~~la-S~S~-----------D~tvklWD~---~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d--~--tv~ 380 (524)
T 2j04_B 320 DFEDTVVS-TVAV-----------DGYFYIFNP---KDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGA--S--SLR 380 (524)
T ss_dssp TTSCCEEE-EEET-----------TSEEEEECG---GGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSS--S--EEE
T ss_pred CCCCeEEE-Eecc-----------CCeEEEEEC---CCCCcccccccccccCcccceEeCCCcCeEEEeCCC--C--cEE
Confidence 88844133 2211 125788887 3332 22333322 246789999999987765422 2 356
Q ss_pred EEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEee
Q 005240 328 LVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 328 ~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 371 (706)
++|+.++. ....+.. ... ....++|||+|+.|+...
T Consensus 381 lwd~~~~~-~~~~l~g-H~~------~V~sva~Sp~g~~l~Sgs 416 (524)
T 2j04_B 381 AVPSRAAF-AVHPLVS-RET------TITAIGVSRLHPMVLAGS 416 (524)
T ss_dssp EEETTCTT-CCEEEEE-CSS------CEEEEECCSSCCBCEEEE
T ss_pred EEECcccc-cceeeec-CCC------ceEEEEeCCCCCeEEEEE
Confidence 66776642 2233322 111 123477899999877654
|
| >1j1i_A META cleavage compound hydrolase; carbazole degradation, META cleavage product hydrolase, histidine tagged protein, alpha/beta-hydrolase; 1.86A {Janthinobacterium} SCOP: c.69.1.10 | Back alignment and structure |
|---|
Probab=98.69 E-value=2.7e-07 Score=93.18 Aligned_cols=116 Identities=12% Similarity=0.108 Sum_probs=72.5
Q ss_pred cCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCC
Q 005240 490 KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGE 569 (706)
Q Consensus 490 ~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~ 569 (706)
.+|..+..... + . -|.||++||.+.+. ..+..|. .....|++ +|.|+..+.+ |+
T Consensus 23 ~~g~~l~y~~~---g----~---g~~vvllHG~~~~~--------~~~~~~~----~~~~~L~~-~~~vi~~Dl~---G~ 76 (296)
T 1j1i_A 23 AGGVETRYLEA---G----K---GQPVILIHGGGAGA--------ESEGNWR----NVIPILAR-HYRVIAMDML---GF 76 (296)
T ss_dssp ETTEEEEEEEE---C----C---SSEEEEECCCSTTC--------CHHHHHT----TTHHHHTT-TSEEEEECCT---TS
T ss_pred ECCEEEEEEec---C----C---CCeEEEECCCCCCc--------chHHHHH----HHHHHHhh-cCEEEEECCC---CC
Confidence 47877775543 1 1 14688899953110 0111111 12344544 4999986665 55
Q ss_pred CCCCCc--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCC
Q 005240 570 GDKLPN--DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 636 (706)
Q Consensus 570 g~~~~~--~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~ 636 (706)
|.+... ....+...+|+.+.++.+ + + .+++.++||||||.+++.++.++|++++++|+.++.
T Consensus 77 G~S~~~~~~~~~~~~~~dl~~~l~~l---~-~-~~~~~lvGhS~Gg~ia~~~A~~~p~~v~~lvl~~~~ 140 (296)
T 1j1i_A 77 GKTAKPDIEYTQDRRIRHLHDFIKAM---N-F-DGKVSIVGNSMGGATGLGVSVLHSELVNALVLMGSA 140 (296)
T ss_dssp TTSCCCSSCCCHHHHHHHHHHHHHHS---C-C-SSCEEEEEEHHHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhc---C-C-CCCeEEEEEChhHHHHHHHHHhChHhhhEEEEECCC
Confidence 555421 123455566666555433 2 2 268999999999999999999999999999998764
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.68 E-value=2.4e-06 Score=88.09 Aligned_cols=185 Identities=10% Similarity=0.050 Sum_probs=110.4
Q ss_pred CcccceeeCC--CCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCC
Q 005240 31 AKINFVSWSP--DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSS 108 (706)
Q Consensus 31 ~~~~~~~~SP--DG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~ 108 (706)
..+....|+| +|++|+.... ...|.++|+.+++..++..... ...+..+.|+|||++|+..+.
T Consensus 126 ~~v~~~~~~~~~~~~~l~s~s~----------dg~i~~wd~~~~~~~~~~~~~~---~~~i~~~~~~pdg~~lasg~~-- 190 (343)
T 3lrv_A 126 NEIIYMYGHNEVNTEYFIWADN----------RGTIGFQSYEDDSQYIVHSAKS---DVEYSSGVLHKDSLLLALYSP-- 190 (343)
T ss_dssp SCEEEEECCC---CCEEEEEET----------TCCEEEEESSSSCEEEEECCCS---SCCCCEEEECTTSCEEEEECT--
T ss_pred CCEEEEEcCCCCCCCEEEEEeC----------CCcEEEEECCCCcEEEEEecCC---CCceEEEEECCCCCEEEEEcC--
Confidence 3588899999 9999987642 2567788988888765542221 112678899999998887532
Q ss_pred CCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCC-c-eecCC-C-ceEeeeeeC
Q 005240 109 RRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-A-KDFGT-P-AVYTAVEPS 183 (706)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~-~-~~lt~-~-~~~~~~~~S 183 (706)
.+.|.++|+ +++ . ..+.. . ..+..++|+
T Consensus 191 -----------------------------------------------dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs 223 (343)
T 3lrv_A 191 -----------------------------------------------DGILDVYNLSSPDQASSRFPVDEEAKIKEVKFA 223 (343)
T ss_dssp -----------------------------------------------TSCEEEEESSCTTSCCEECCCCTTSCEEEEEEC
T ss_pred -----------------------------------------------CCEEEEEECCCCCCCccEEeccCCCCEEEEEEe
Confidence 157888898 553 3 45655 3 788999999
Q ss_pred CCCcEEEEEeeccCcccccccccccceEEEEecCCCee-EEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEe
Q 005240 184 PDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEA 262 (706)
Q Consensus 184 pDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~ 262 (706)
|||++|+..+ . ..|.+||+...+. ..+....... .+ .+...++|+|+|+. |+....
T Consensus 224 ~~g~~l~s~~-~-------------~~v~iwd~~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~~~g~~-l~~~s~ 280 (343)
T 3lrv_A 224 DNGYWMVVEC-D-------------QTVVCFDLRKDVGTLAYPTYTIPE-FK-------TGTVTYDIDDSGKN-MIAYSN 280 (343)
T ss_dssp TTSSEEEEEE-S-------------SBEEEEETTSSTTCBSSCCCBC-------------CCEEEEECTTSSE-EEEEET
T ss_pred CCCCEEEEEe-C-------------CeEEEEEcCCCCcceeeccccccc-cc-------ccceEEEECCCCCE-EEEecC
Confidence 9999998766 2 1699999985532 2222111000 00 00024899999986 553311
Q ss_pred ccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecC---CCceEEEEe
Q 005240 263 QDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCD---DSLALVNET 317 (706)
Q Consensus 263 ~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wsp---Dg~~l~~~~ 317 (706)
++. .+.+++. +.+....-. ..+..+.|++ +++.+++..
T Consensus 281 ---~d~--------~i~v~~~---~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~ 321 (343)
T 3lrv_A 281 ---ESN--------SLTIYKF---DKKTKNWTK---DEESALCLQSDTADFTDMDVVC 321 (343)
T ss_dssp ---TTT--------EEEEEEE---CTTTCSEEE---EEEEECCC----CCCCEEEEEE
T ss_pred ---CCC--------cEEEEEE---cccccceEe---cCceeEecCccccccceeEEEe
Confidence 011 2455555 222211111 3344567887 777777665
|
| >1mj5_A 1,3,4,6-tetrachloro-1,4-cyclohexadiene hydrolase; LINB, haloalkane dehalogenase, 1, 3, 4, 4-cyclohexadiene dehalogenase; 0.95A {Sphingomonas paucimobilis} SCOP: c.69.1.8 PDB: 1cv2_A 1d07_A 2bfn_A 1g42_A* 1g4h_A* 1g5f_A* 1iz7_A 1iz8_A* 1k5p_A 1k63_A 1k6e_A | Back alignment and structure |
|---|
Probab=98.67 E-value=3.6e-07 Score=92.08 Aligned_cols=114 Identities=11% Similarity=-0.041 Sum_probs=76.0
Q ss_pred ccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCC
Q 005240 489 RKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIG 568 (706)
Q Consensus 489 ~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g 568 (706)
..+|..+....+-+ -|+||++||.+.. ...+. ..+..|++ +|.|+..+.+ |
T Consensus 15 ~~~g~~l~~~~~g~----------~~~vv~lHG~~~~-----------~~~~~----~~~~~L~~-~~~vi~~D~~---G 65 (302)
T 1mj5_A 15 EIKGRRMAYIDEGT----------GDPILFQHGNPTS-----------SYLWR----NIMPHCAG-LGRLIACDLI---G 65 (302)
T ss_dssp EETTEEEEEEEESC----------SSEEEEECCTTCC-----------GGGGT----TTGGGGTT-SSEEEEECCT---T
T ss_pred EECCEEEEEEEcCC----------CCEEEEECCCCCc-----------hhhhH----HHHHHhcc-CCeEEEEcCC---C
Confidence 34788887665521 2679999997421 11121 12233444 4788886665 4
Q ss_pred CCCCCCch------hhHHHHHHHHHHHHHHHHHcCCCCC-CcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCC
Q 005240 569 EGDKLPND------RFVEQLVSSAEAAVEEVVRRGVADP-SRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSY 637 (706)
Q Consensus 569 ~g~~~~~~------~~~~~~~~D~~~~~~~l~~~~~id~-~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~ 637 (706)
+|.+.... .......+|+.++++.+ +. .++.++|||+||.+++.++.++|++++++|+.+|..
T Consensus 66 ~G~S~~~~~~~~~~~~~~~~~~~~~~~l~~l------~~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 135 (302)
T 1mj5_A 66 MGDSDKLDPSGPERYAYAEHRDYLDALWEAL------DLGDRVVLVVHDWGSALGFDWARRHRERVQGIAYMEAIA 135 (302)
T ss_dssp STTSCCCSSCSTTSSCHHHHHHHHHHHHHHT------TCTTCEEEEEEHHHHHHHHHHHHHTGGGEEEEEEEEECC
T ss_pred CCCCCCCCCCCcccccHHHHHHHHHHHHHHh------CCCceEEEEEECCccHHHHHHHHHCHHHHhheeeecccC
Confidence 45443321 23556667776666654 33 789999999999999999999999999999998765
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.66 E-value=6.1e-06 Score=85.22 Aligned_cols=179 Identities=11% Similarity=0.077 Sum_probs=121.4
Q ss_pred eeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhc
Q 005240 62 LRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNL 141 (706)
Q Consensus 62 ~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (706)
..|+.+++++.+...+...... ...++|++.+..||+.-.
T Consensus 53 ~~I~~i~~~g~~~~~~~~~~~~-----~~~l~~d~~~~~ly~~D~----------------------------------- 92 (349)
T 3v64_C 53 IDIRQVLPHRSEYTLLLNNLEN-----AIALDFHHRRELVFWSDV----------------------------------- 92 (349)
T ss_dssp SCEEEECTTSCCEEEEECSCSC-----EEEEEEETTTTEEEEEET-----------------------------------
T ss_pred cceEEEeCCCCeeEEeecCCCc-----eEEEEEeccccEEEEEec-----------------------------------
Confidence 5789999988777666433322 567899988888887621
Q ss_pred cCCchhhhhhhhcccceEEEEccCC-Cceec-CCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCC
Q 005240 142 LKDEYDESLFDYYTTAQLVLGSLDG-TAKDF-GTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG 218 (706)
Q Consensus 142 ~~~~~d~~~~~~~~~~~l~~~~l~g-~~~~l-t~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 218 (706)
....|++++++| ..+.+ ..+ .....+++.+.+..|+++.... ..|+++++++
T Consensus 93 -------------~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~------------~~I~~~~~dG 147 (349)
T 3v64_C 93 -------------TLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGT------------SRIEVANLDG 147 (349)
T ss_dssp -------------TTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTT------------TEEEEEETTS
T ss_pred -------------cCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCC------------CeEEEEcCCC
Confidence 126799999977 44443 323 4566888999889998876542 4899999998
Q ss_pred CeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeec-
Q 005240 219 KLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL- 297 (706)
Q Consensus 219 ~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~- 297 (706)
+..+.+..... ..+..+++.|++.. |||.... . ...|++++. ++...+.+...
T Consensus 148 ~~~~~l~~~~l------------~~P~~iavdp~~g~-ly~td~~---~-------~~~I~r~~~---dG~~~~~~~~~~ 201 (349)
T 3v64_C 148 AHRKVLLWQSL------------EKPRAIALHPMEGT-IYWTDWG---N-------TPRIEASSM---DGSGRRIIADTH 201 (349)
T ss_dssp CSCEEEECTTC------------SCEEEEEEETTTTE-EEEEECS---S-------SCEEEEEET---TSCSCEESCCSS
T ss_pred CceEEEEeCCC------------CCcceEEEecCcCe-EEEeccC---C-------CCEEEEEeC---CCCCcEEEEECC
Confidence 76666543221 12447889998776 8877321 1 135888888 56555555432
Q ss_pred ccccccceecCCCceEEEEeeccccceEEEEEcCCCC
Q 005240 298 DLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK 334 (706)
Q Consensus 298 ~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~ 334 (706)
-.....++|+|++..|+++.. ...+|+++++++.
T Consensus 202 ~~~PnGla~d~~~~~lY~aD~---~~~~I~~~~~dG~ 235 (349)
T 3v64_C 202 LFWPNGLTIDYAGRRMYWVDA---KHHVIERANLDGS 235 (349)
T ss_dssp CSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSC
T ss_pred CCCcceEEEeCCCCEEEEEEC---CCCEEEEEeCCCC
Confidence 334567899999888988742 3457999999873
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=98.66 E-value=8.9e-06 Score=85.99 Aligned_cols=200 Identities=7% Similarity=-0.052 Sum_probs=120.9
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~ 111 (706)
....++|+|||+ |+++ . .....|++++++++..+.+...... .. ++|+|+|+.|++....
T Consensus 132 ~P~~la~d~~g~-lyv~-d--------~~~~~I~~id~~~g~~~~~~~~~~~-----~~-ia~~~~g~~l~~~d~~---- 191 (409)
T 3hrp_A 132 YMWGIAAVGNNT-VLAY-Q--------RDDPRVRLISVDDNKVTTVHPGFKG-----GK-PAVTKDKQRVYSIGWE---- 191 (409)
T ss_dssp CEEEEEECSTTE-EEEE-E--------TTTTEEEEEETTTTEEEEEEETCCB-----CB-CEECTTSSEEEEEBSS----
T ss_pred CceEEEEeCCCC-EEEE-e--------cCCCcEEEEECCCCEEEEeeccCCC-----Cc-eeEecCCCcEEEEecC----
Confidence 456788999998 5443 2 3446899999998887776533221 34 8999999987776321
Q ss_pred CCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCC--Cceec----C-CCceEeeeeeCC
Q 005240 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG--TAKDF----G-TPAVYTAVEPSP 184 (706)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g--~~~~l----t-~~~~~~~~~~Sp 184 (706)
....|++++..+ ..+.+ . .......++++|
T Consensus 192 -------------------------------------------~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p 228 (409)
T 3hrp_A 192 -------------------------------------------GTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDE 228 (409)
T ss_dssp -------------------------------------------TTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECT
T ss_pred -------------------------------------------CCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeC
Confidence 112788888843 33344 2 224567899999
Q ss_pred CCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCc-ceeeecCCCceEEEEEec
Q 005240 185 DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMR-SISWRADKPSTLYWVEAQ 263 (706)
Q Consensus 185 DG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~-~~~~spdg~~~l~~~~~~ 263 (706)
++..|++.. . ...|++++++++....+....... .. ...+. .++|+|++.. ||+.. .
T Consensus 229 ~~g~lyv~d-~------------~~~I~~~d~~~~~~~~~~~~~~~g-~~------~~~P~~~ia~~p~~g~-lyv~d-~ 286 (409)
T 3hrp_A 229 TEEWLYFVD-S------------NKNFGRFNVKTQEVTLIKQLELSG-SL------GTNPGPYLIYYFVDSN-FYMSD-Q 286 (409)
T ss_dssp TSSEEEEEC-T------------TCEEEEEETTTCCEEEEEECCCCS-CC------CCSSCCEEEEETTTTE-EEEEE-T
T ss_pred CCCeEEEEE-C------------CCcEEEEECCCCCEEEEecccccC-CC------CCCccccEEEeCCCCE-EEEEe-C
Confidence 777887733 2 137999999877655442211100 00 01123 7899997665 76552 1
Q ss_pred cCCCCccccCccceeeeecCCCCCCCCceEEeecc---------------cccccceecCCCceEEEEeeccccceEEEE
Q 005240 264 DRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLD---------------LRFRSVSWCDDSLALVNETWYKTSQTRTWL 328 (706)
Q Consensus 264 ~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~---------------~~~~~~~wspDg~~l~~~~~~~~~~~~l~~ 328 (706)
....|++++. ++ ....+.... .....++++|||. |+++. .. ...+|++
T Consensus 287 ----------~~~~I~~~~~---~g-~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~-lyvad-~~-~~~~I~~ 349 (409)
T 3hrp_A 287 ----------NLSSVYKITP---DG-ECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN-FYIVD-GF-KGYCLRK 349 (409)
T ss_dssp ----------TTTEEEEECT---TC-CEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC-EEEEE-TT-TTCEEEE
T ss_pred ----------CCCEEEEEec---CC-CEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC-EEEEe-CC-CCCEEEE
Confidence 1235778876 33 333333221 1245678999998 55543 20 3457999
Q ss_pred EcCCC
Q 005240 329 VCPGS 333 (706)
Q Consensus 329 ~d~~~ 333 (706)
+++.+
T Consensus 350 ~~~~~ 354 (409)
T 3hrp_A 350 LDILD 354 (409)
T ss_dssp EETTT
T ss_pred EECCC
Confidence 99665
|
| >2xt0_A Haloalkane dehalogenase; hydrolase, alpha-beta hydrolase fold; 1.90A {Plesiocystis pacifica} | Back alignment and structure |
|---|
Probab=98.65 E-value=1.5e-07 Score=95.05 Aligned_cols=114 Identities=14% Similarity=0.029 Sum_probs=80.6
Q ss_pred eEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCC
Q 005240 493 VPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDK 572 (706)
Q Consensus 493 ~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~ 572 (706)
..++....-|.+ . -|.||++||.+.. ...|. ..+..|++.||.|++++-+ |+|.+
T Consensus 33 ~~l~y~~~G~~~-----~--g~~vvllHG~~~~-----------~~~w~----~~~~~L~~~g~rvia~Dl~---G~G~S 87 (297)
T 2xt0_A 33 LRMHYVDEGPRD-----A--EHTFLCLHGEPSW-----------SFLYR----KMLPVFTAAGGRVVAPDLF---GFGRS 87 (297)
T ss_dssp CCEEEEEESCTT-----C--SCEEEEECCTTCC-----------GGGGT----TTHHHHHHTTCEEEEECCT---TSTTS
T ss_pred eEEEEEEccCCC-----C--CCeEEEECCCCCc-----------ceeHH----HHHHHHHhCCcEEEEeCCC---CCCCC
Confidence 788776664421 0 1568889996421 11121 2456788899999996554 66666
Q ss_pred CCc----hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCC
Q 005240 573 LPN----DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSY 637 (706)
Q Consensus 573 ~~~----~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~ 637 (706)
... ........+|+.+.++.+ +-+++.++||||||.+++.++.++|++++++|..++..
T Consensus 88 ~~~~~~~~~~~~~~a~dl~~ll~~l------~~~~~~lvGhS~Gg~va~~~A~~~P~~v~~lvl~~~~~ 150 (297)
T 2xt0_A 88 DKPTDDAVYTFGFHRRSLLAFLDAL------QLERVTLVCQDWGGILGLTLPVDRPQLVDRLIVMNTAL 150 (297)
T ss_dssp CEESCGGGCCHHHHHHHHHHHHHHH------TCCSEEEEECHHHHHHHTTHHHHCTTSEEEEEEESCCC
T ss_pred CCCCCcccCCHHHHHHHHHHHHHHh------CCCCEEEEEECchHHHHHHHHHhChHHhcEEEEECCCC
Confidence 432 223566778888777766 23689999999999999999999999999999988743
|
| >1brt_A Bromoperoxidase A2; haloperoxidase, oxidoreductase, alpha/beta hydrolase fold, mutant M99T; 1.50A {Streptomyces aureofaciens} SCOP: c.69.1.12 PDB: 1bro_A 1a8u_A 1a7u_A | Back alignment and structure |
|---|
Probab=98.63 E-value=1.7e-07 Score=93.49 Aligned_cols=82 Identities=13% Similarity=0.075 Sum_probs=63.7
Q ss_pred hHHHHHHHCCeEEEEcCCCCcCCCCCCCCc--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhC
Q 005240 546 TSSLIFLARRFAVLAGPSIPIIGEGDKLPN--DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHA 623 (706)
Q Consensus 546 ~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~--~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~ 623 (706)
..+..|++.||.|+..+.+ |+|.+... ....+...+|+.+.++.+ +.+++.++||||||.+++.++.++
T Consensus 41 ~~~~~L~~~g~~vi~~D~~---G~G~S~~~~~~~~~~~~a~dl~~~l~~l------~~~~~~lvGhS~Gg~va~~~a~~~ 111 (277)
T 1brt_A 41 RQSAALLDAGYRVITYDRR---GFGQSSQPTTGYDYDTFAADLNTVLETL------DLQDAVLVGFSTGTGEVARYVSSY 111 (277)
T ss_dssp HHHHHHHHTTCEEEEECCT---TSTTSCCCSSCCSHHHHHHHHHHHHHHH------TCCSEEEEEEGGGHHHHHHHHHHH
T ss_pred HHHHHHhhCCCEEEEeCCC---CCCCCCCCCCCccHHHHHHHHHHHHHHh------CCCceEEEEECccHHHHHHHHHHc
Confidence 3456788899999996665 55655432 224566778888888766 236899999999999999999999
Q ss_pred CC-ceeEEEeccCC
Q 005240 624 PH-LFCCGIARSGS 636 (706)
Q Consensus 624 p~-~~~a~v~~~~~ 636 (706)
|+ +++++|..++.
T Consensus 112 p~~~v~~lvl~~~~ 125 (277)
T 1brt_A 112 GTARIAKVAFLASL 125 (277)
T ss_dssp CSTTEEEEEEESCC
T ss_pred CcceEEEEEEecCc
Confidence 99 99999998863
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=98.63 E-value=3.8e-06 Score=86.09 Aligned_cols=231 Identities=9% Similarity=0.071 Sum_probs=132.0
Q ss_pred cceeEeecCCCCCCCCe-eeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceee-cccCCC
Q 005240 5 TGIGIHRLLPDDSLGPE-KEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKP-LFESPD 82 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~-~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~-lt~~~~ 82 (706)
..|.+.|..+ ++. +++. .+.....+++|||| +| |+.+ .....|+++|+++++... +.-...
T Consensus 64 ~~v~viD~~t----~~~~~~i~---~~~~p~~i~~~~~g-~l-yv~~--------~~~~~v~~iD~~t~~~~~~i~~g~~ 126 (328)
T 3dsm_A 64 HVIFAIDINT----FKEVGRIT---GFTSPRYIHFLSDE-KA-YVTQ--------IWDYRIFIINPKTYEITGYIECPDM 126 (328)
T ss_dssp TEEEEEETTT----CCEEEEEE---CCSSEEEEEEEETT-EE-EEEE--------BSCSEEEEEETTTTEEEEEEECTTC
T ss_pred CEEEEEECcc----cEEEEEcC---CCCCCcEEEEeCCC-eE-EEEE--------CCCCeEEEEECCCCeEEEEEEcCCc
Confidence 4577888866 665 4443 44457788999998 55 5543 234789999999887653 321110
Q ss_pred ccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEE
Q 005240 83 ICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLG 162 (706)
Q Consensus 83 ~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~ 162 (706)
.........+.+ ++++|++... . ....|.++
T Consensus 127 ~~~~~~p~~i~~--~~~~lyv~~~---~--------------------------------------------~~~~v~vi 157 (328)
T 3dsm_A 127 DMESGSTEQMVQ--YGKYVYVNCW---S--------------------------------------------YQNRILKI 157 (328)
T ss_dssp CTTTCBCCCEEE--ETTEEEEEEC---T--------------------------------------------TCCEEEEE
T ss_pred cccCCCcceEEE--ECCEEEEEcC---C--------------------------------------------CCCEEEEE
Confidence 000001345566 4555665421 0 01578889
Q ss_pred cc-CCC-ceecCCCceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCcc
Q 005240 163 SL-DGT-AKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240 (706)
Q Consensus 163 ~l-~g~-~~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~ 240 (706)
|+ +++ ...+..+.....+.++|||+ ++++...... ..++......|+++|..+.++......+..
T Consensus 158 D~~t~~~~~~i~~g~~p~~i~~~~dG~-l~v~~~~~~~--~~~~~~~~~~v~~id~~t~~v~~~~~~~~g---------- 224 (328)
T 3dsm_A 158 DTETDKVVDELTIGIQPTSLVMDKYNK-MWTITDGGYE--GSPYGYEAPSLYRIDAETFTVEKQFKFKLG---------- 224 (328)
T ss_dssp ETTTTEEEEEEECSSCBCCCEECTTSE-EEEEBCCBCT--TCSSCBCCCEEEEEETTTTEEEEEEECCTT----------
T ss_pred ECCCCeEEEEEEcCCCccceEEcCCCC-EEEEECCCcc--CCccccCCceEEEEECCCCeEEEEEecCCC----------
Confidence 98 553 33444344556888999997 5555543210 000011125799999987765532222110
Q ss_pred CCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceE--Eeec-ccccccceecCCCceEEEEe
Q 005240 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEI--LHKL-DLRFRSVSWCDDSLALVNET 317 (706)
Q Consensus 241 ~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~--l~~~-~~~~~~~~wspDg~~l~~~~ 317 (706)
..+..++++||++. ||+. +. .|+++|. ++++... +... ......++++|++..|+.+.
T Consensus 225 -~~p~~la~~~d~~~-lyv~-~~-------------~v~~~d~---~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~ 285 (328)
T 3dsm_A 225 -DWPSEVQLNGTRDT-LYWI-NN-------------DIWRMPV---EADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVAD 285 (328)
T ss_dssp -CCCEEEEECTTSCE-EEEE-SS-------------SEEEEET---TCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEE
T ss_pred -CCceeEEEecCCCE-EEEE-cc-------------EEEEEEC---CCCceeeeeeecCCCCceEEEEEcCCCCeEEEEc
Confidence 12457899999986 6654 21 3788888 5555421 1111 34456788999766666653
Q ss_pred ec-cccceEEEEEcCCC
Q 005240 318 WY-KTSQTRTWLVCPGS 333 (706)
Q Consensus 318 ~~-~~~~~~l~~~d~~~ 333 (706)
.. -.....|+++|+++
T Consensus 286 ~~~y~~~~~V~v~d~~g 302 (328)
T 3dsm_A 286 AIDYQQQGIVYRYSPQG 302 (328)
T ss_dssp CTTSSSEEEEEEECTTC
T ss_pred ccccccCCEEEEECCCC
Confidence 11 01356789999874
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=98.62 E-value=2e-06 Score=90.60 Aligned_cols=52 Identities=15% Similarity=0.112 Sum_probs=34.5
Q ss_pred ceEEEEcc-CC-CceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCe
Q 005240 157 AQLVLGSL-DG-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL 220 (706)
Q Consensus 157 ~~l~~~~l-~g-~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 220 (706)
..|.++|+ ++ ....+... ..+..++|+|++..++++.... ..|.+||+.+++
T Consensus 166 ~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d------------~~v~~wd~~t~~ 220 (393)
T 4gq1_A 166 CTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERN------------GNIRIFDWTLNL 220 (393)
T ss_dssp SEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETT------------SEEEEEETTCCC
T ss_pred CeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCC------------CEEEEEECCCCc
Confidence 46777787 44 33333333 6778999999997655554432 379999998553
|
| >2xua_A PCAD, 3-oxoadipate ENOL-lactonase; hydrolase, catechol metabolism; 1.90A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=98.61 E-value=3.9e-07 Score=90.34 Aligned_cols=117 Identities=15% Similarity=0.112 Sum_probs=80.1
Q ss_pred cCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCC
Q 005240 490 KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGE 569 (706)
Q Consensus 490 ~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~ 569 (706)
.+|..++...+-|++ . +-|.||++||-+.. ...| ...+..|+ .+|.|+..+.+ |+
T Consensus 9 ~~g~~l~y~~~g~~~----~--~~~~vvllHG~~~~-----------~~~~----~~~~~~L~-~~~~vi~~D~~---G~ 63 (266)
T 2xua_A 9 VNGTELHYRIDGERH----G--NAPWIVLSNSLGTD-----------LSMW----APQVAALS-KHFRVLRYDTR---GH 63 (266)
T ss_dssp CSSSEEEEEEESCSS----S--CCCEEEEECCTTCC-----------GGGG----GGGHHHHH-TTSEEEEECCT---TS
T ss_pred ECCEEEEEEEcCCcc----C--CCCeEEEecCccCC-----------HHHH----HHHHHHHh-cCeEEEEecCC---CC
Confidence 478888887775431 0 13678999995321 1111 12345554 56999986554 55
Q ss_pred CCCCCc--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCC
Q 005240 570 GDKLPN--DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSY 637 (706)
Q Consensus 570 g~~~~~--~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~ 637 (706)
|.+... ........+|+.+.++.+ ..+++.++||||||.+++.++.++|++++++|..++..
T Consensus 64 G~S~~~~~~~~~~~~~~dl~~~l~~l------~~~~~~lvGhS~Gg~va~~~A~~~p~~v~~lvl~~~~~ 127 (266)
T 2xua_A 64 GHSEAPKGPYTIEQLTGDVLGLMDTL------KIARANFCGLSMGGLTGVALAARHADRIERVALCNTAA 127 (266)
T ss_dssp TTSCCCSSCCCHHHHHHHHHHHHHHT------TCCSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhc------CCCceEEEEECHHHHHHHHHHHhChhhhheeEEecCCC
Confidence 655432 223566777888777765 23589999999999999999999999999999987653
|
| >2wfl_A Polyneuridine-aldehyde esterase; alkaloid metabolism, monoterpenoid indole alkaloids, PNAE, hydrolase, serine esterase; HET: CME; 2.10A {Rauvolfia serpentina} PDB: 2wfm_A 3gzj_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=2.2e-07 Score=92.15 Aligned_cols=100 Identities=9% Similarity=0.033 Sum_probs=70.8
Q ss_pred eEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCCCCch---hhHHHHHHHHHHHH
Q 005240 514 PCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPND---RFVEQLVSSAEAAV 590 (706)
Q Consensus 514 p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~---~~~~~~~~D~~~~~ 590 (706)
|.||++||.+.. ...|. .....|++.||.|+.++-+ |+|.+.... ...+...+|+.+.+
T Consensus 11 ~~vvllHG~~~~-----------~~~w~----~~~~~L~~~g~~via~Dl~---G~G~S~~~~~~~~~~~~~a~dl~~~l 72 (264)
T 2wfl_A 11 KHFVLVHGGCLG-----------AWIWY----KLKPLLESAGHKVTAVDLS---AAGINPRRLDEIHTFRDYSEPLMEVM 72 (264)
T ss_dssp CEEEEECCTTCC-----------GGGGT----THHHHHHHTTCEEEEECCT---TSTTCSCCGGGCCSHHHHHHHHHHHH
T ss_pred CeEEEECCCccc-----------cchHH----HHHHHHHhCCCEEEEeecC---CCCCCCCCcccccCHHHHHHHHHHHH
Confidence 678889996421 11121 3456777899999996654 566654321 23566677777766
Q ss_pred HHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCC
Q 005240 591 EEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 636 (706)
Q Consensus 591 ~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~ 636 (706)
+.+ +. .+++.++||||||.+++.++.++|++++++|..++.
T Consensus 73 ~~l---~~--~~~~~lvGhSmGG~va~~~a~~~p~~v~~lvl~~~~ 113 (264)
T 2wfl_A 73 ASI---PP--DEKVVLLGHSFGGMSLGLAMETYPEKISVAVFMSAM 113 (264)
T ss_dssp HHS---CT--TCCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESSC
T ss_pred HHh---CC--CCCeEEEEeChHHHHHHHHHHhChhhhceeEEEeec
Confidence 654 21 268999999999999999999999999999988763
|
| >1hkh_A Gamma lactamase; hydrolase, alpha/beta hydrolase, CO-factor free haloperoxidase,; 1.73A {Microbacterium} SCOP: c.69.1.12 PDB: 1hl7_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=2.7e-07 Score=92.11 Aligned_cols=81 Identities=16% Similarity=0.111 Sum_probs=62.9
Q ss_pred HHHHHHHCCeEEEEcCCCCcCCCCCCCCc--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCC
Q 005240 547 SSLIFLARRFAVLAGPSIPIIGEGDKLPN--DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAP 624 (706)
Q Consensus 547 ~~~~l~~~G~~v~~~~~~~~~g~g~~~~~--~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p 624 (706)
.+..|+++||.|+..+.+ |+|.+... ....+...+|+.++++.+ +.+++.++||||||.+++.++.++|
T Consensus 42 ~~~~L~~~g~~vi~~D~~---G~G~S~~~~~~~~~~~~~~dl~~~l~~l------~~~~~~lvGhS~Gg~va~~~a~~~p 112 (279)
T 1hkh_A 42 QTRELLAQGYRVITYDRR---GFGGSSKVNTGYDYDTFAADLHTVLETL------DLRDVVLVGFSMGTGELARYVARYG 112 (279)
T ss_dssp HHHHHHHTTEEEEEECCT---TSTTSCCCSSCCSHHHHHHHHHHHHHHH------TCCSEEEEEETHHHHHHHHHHHHHC
T ss_pred hHHHHHhCCcEEEEeCCC---CCCCCCCCCCCCCHHHHHHHHHHHHHhc------CCCceEEEEeChhHHHHHHHHHHcC
Confidence 456788899999996665 45555332 223556678888887766 3468999999999999999999999
Q ss_pred C-ceeEEEeccCC
Q 005240 625 H-LFCCGIARSGS 636 (706)
Q Consensus 625 ~-~~~a~v~~~~~ 636 (706)
+ +++++|..++.
T Consensus 113 ~~~v~~lvl~~~~ 125 (279)
T 1hkh_A 113 HERVAKLAFLASL 125 (279)
T ss_dssp STTEEEEEEESCC
T ss_pred ccceeeEEEEccC
Confidence 8 99999998864
|
| >1b6g_A Haloalkane dehalogenase; hydrolase, alpha/beta-hydrolase; 1.15A {Xanthobacter autotrophicus} SCOP: c.69.1.8 PDB: 1be0_A 1cij_A 2yxp_X 1edd_A 1edb_A 2dhc_A 2dhe_A 2eda_A 2edc_A 2had_A 1ede_A 2pky_X 1bez_A 1bee_A 2dhd_A* 1hde_A | Back alignment and structure |
|---|
Probab=98.60 E-value=1.5e-07 Score=95.71 Aligned_cols=114 Identities=16% Similarity=0.050 Sum_probs=81.4
Q ss_pred eEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCC
Q 005240 493 VPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDK 572 (706)
Q Consensus 493 ~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~ 572 (706)
..++....-|++ . -|.||++||.+.. ...|. ..+..|++.||.|++++-+ |+|.+
T Consensus 34 ~~l~y~~~G~~~-----~--g~~vvllHG~~~~-----------~~~w~----~~~~~L~~~g~rvia~Dl~---G~G~S 88 (310)
T 1b6g_A 34 LRAHYLDEGNSD-----A--EDVFLCLHGEPTW-----------SYLYR----KMIPVFAESGARVIAPDFF---GFGKS 88 (310)
T ss_dssp CEEEEEEEECTT-----C--SCEEEECCCTTCC-----------GGGGT----TTHHHHHHTTCEEEEECCT---TSTTS
T ss_pred eEEEEEEeCCCC-----C--CCEEEEECCCCCc-----------hhhHH----HHHHHHHhCCCeEEEeCCC---CCCCC
Confidence 788877665421 0 1568889996521 11121 2456788899999996554 66766
Q ss_pred CCc----hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCC
Q 005240 573 LPN----DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSY 637 (706)
Q Consensus 573 ~~~----~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~ 637 (706)
... ....+...+|+.+.++.| +-+++.++||||||.+++.++.++|++++++|..++..
T Consensus 89 ~~~~~~~~y~~~~~a~dl~~ll~~l------~~~~~~lvGhS~Gg~va~~~A~~~P~rv~~Lvl~~~~~ 151 (310)
T 1b6g_A 89 DKPVDEEDYTFEFHRNFLLALIERL------DLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNAXL 151 (310)
T ss_dssp CEESCGGGCCHHHHHHHHHHHHHHH------TCCSEEEEECTHHHHHHTTSGGGSGGGEEEEEEESCCC
T ss_pred CCCCCcCCcCHHHHHHHHHHHHHHc------CCCCEEEEEcChHHHHHHHHHHhChHhheEEEEecccc
Confidence 432 123567788888877766 23689999999999999999999999999999987643
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=98.59 E-value=2.4e-05 Score=77.11 Aligned_cols=195 Identities=9% Similarity=-0.028 Sum_probs=110.5
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~ 111 (706)
....++++|||+ |+++.. .....|++++..++....+..... ..+..+++++||+ |++...
T Consensus 25 ~p~~i~~~~~g~-l~v~~~--------~~~~~i~~~~~~~~~~~~~~~~~~----~~p~~i~~~~~g~-l~v~~~----- 85 (270)
T 1rwi_B 25 SPSGVAVDSAGN-VYVTSE--------GMYGRVVKLATGSTGTTVLPFNGL----YQPQGLAVDGAGT-VYVTDF----- 85 (270)
T ss_dssp CEEEEEECTTCC-EEEEEC--------SSSCEEEEECC-----EECCCCSC----CSCCCEEECTTCC-EEEEET-----
T ss_pred CccceEECCCCC-EEEEcc--------CCCCcEEEecCCCcccceEeeCCc----CCcceeEECCCCC-EEEEcC-----
Confidence 456788999997 544132 234689999887766554432111 1256789999998 554421
Q ss_pred CCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCC-CceecCCC--ceEeeeeeCCCCcE
Q 005240 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TAKDFGTP--AVYTAVEPSPDQKY 188 (706)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g-~~~~lt~~--~~~~~~~~SpDG~~ 188 (706)
...|++++.++ ....+... .....++++|||+
T Consensus 86 --------------------------------------------~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~- 120 (270)
T 1rwi_B 86 --------------------------------------------NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGA- 120 (270)
T ss_dssp --------------------------------------------TTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCC-
T ss_pred --------------------------------------------CCEEEEEeCCCceEeeeecCCcCCCcceEECCCCC-
Confidence 15788888866 44433322 4677899999997
Q ss_pred EEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCC
Q 005240 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDA 268 (706)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~ 268 (706)
|++.... ...|++++..+.......... . ..+..++++++|+ ||+....
T Consensus 121 l~v~~~~------------~~~i~~~~~~~~~~~~~~~~~--~----------~~p~~i~~~~~g~--l~v~~~~----- 169 (270)
T 1rwi_B 121 VYVADRG------------NNRVVKLAAGSKTQTVLPFTG--L----------NDPDGVAVDNSGN--VYVTDTD----- 169 (270)
T ss_dssp EEEEEGG------------GTEEEEECTTCCSCEECCCCS--C----------CSCCCEEECTTCC--EEEEEGG-----
T ss_pred EEEEECC------------CCEEEEEECCCceeEeecccc--C----------CCceeEEEeCCCC--EEEEECC-----
Confidence 5555432 236888865544322221110 0 1244778999986 6654211
Q ss_pred ccccCccceeeeecCCCCCCCCceEEeec-ccccccceecCCCceEEEEeeccccceEEEEEcCCCC
Q 005240 269 NVEVSPRDIIYTQPAEPAEGEKPEILHKL-DLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK 334 (706)
Q Consensus 269 ~~~~~~~~~l~~~d~~~~~~~~~~~l~~~-~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~ 334 (706)
...|++++. +++........ ......+.++++| .|++... ....|++++.++.
T Consensus 170 ------~~~i~~~~~---~~~~~~~~~~~~~~~p~~i~~d~~g-~l~v~~~---~~~~v~~~~~~~~ 223 (270)
T 1rwi_B 170 ------NNRVVKLEA---ESNNQVVLPFTDITAPWGIAVDEAG-TVYVTEH---NTNQVVKLLAGST 223 (270)
T ss_dssp ------GTEEEEECT---TTCCEEECCCSSCCSEEEEEECTTC-CEEEEET---TTSCEEEECTTCS
T ss_pred ------CCEEEEEec---CCCceEeecccCCCCceEEEECCCC-CEEEEEC---CCCcEEEEcCCCC
Confidence 124778887 44443332211 2445677899998 4554432 2345889998763
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.59 E-value=1.2e-06 Score=90.61 Aligned_cols=93 Identities=12% Similarity=-0.076 Sum_probs=55.7
Q ss_pred ceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCC-Ccc
Q 005240 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESP-DIC 84 (706)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~-~~~ 84 (706)
.|++.|+++ ++. +..++.+... .+.+||||++|+...........+.....|.++|+.+++...-...+ ...
T Consensus 47 ~vsvID~~t----~~v--~~~i~vG~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~ 119 (368)
T 1mda_H 47 ENWVSCAGC----GVT--LGHSLGAFLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPR 119 (368)
T ss_dssp EEEEEETTT----TEE--EEEEEECTTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCS
T ss_pred eEEEEECCC----CeE--EEEEeCCCCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccc
Confidence 567877755 433 3445566545 89999999999665421000011123478999999998754432111 000
Q ss_pred --ccccccceEEecCCcEEEEEe
Q 005240 85 --LNAVFGSFVWVNNSTLLIFTI 105 (706)
Q Consensus 85 --~~~~~~~~~wSpDg~~l~~~~ 105 (706)
.......+.+||||++||+..
T Consensus 120 ~~~g~~P~~ia~SpDGk~lyVan 142 (368)
T 1mda_H 120 FSVGPRVHIIGNCASSACLLFFL 142 (368)
T ss_dssp CCBSCCTTSEEECTTSSCEEEEE
T ss_pred cccCCCcceEEEcCCCCEEEEEc
Confidence 001256889999999988763
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.59 E-value=1.7e-05 Score=83.52 Aligned_cols=179 Identities=12% Similarity=-0.041 Sum_probs=120.5
Q ss_pred eeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhc
Q 005240 62 LRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNL 141 (706)
Q Consensus 62 ~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (706)
..|+.++++++....+...... +..++|++.+..||++-.
T Consensus 92 ~~I~~i~l~~~~~~~~~~~~~~-----~~~l~~d~~~~~lywsD~----------------------------------- 131 (400)
T 3p5b_L 92 HEVRKMTLDRSEYTSLIPNLRN-----VVALDTEVASNRIYWSDL----------------------------------- 131 (400)
T ss_dssp TEEEEECTTSCSCEEEECSCSC-----EEEEEEETTTTEEEEEET-----------------------------------
T ss_pred ceeEEEccCCcceeEeccccCc-----ceEEeeeeccCceEEEec-----------------------------------
Confidence 6899999998876666433222 567899998888887621
Q ss_pred cCCchhhhhhhhcccceEEEEccCC-----Cceec-CCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEE
Q 005240 142 LKDEYDESLFDYYTTAQLVLGSLDG-----TAKDF-GTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVW 214 (706)
Q Consensus 142 ~~~~~d~~~~~~~~~~~l~~~~l~g-----~~~~l-t~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~ 214 (706)
....|++++++| ....+ ... .....+++.+.++.|+++.... ..|.++
T Consensus 132 -------------~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~------------~~I~~~ 186 (400)
T 3p5b_L 132 -------------SQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVL------------GTVSVA 186 (400)
T ss_dssp -------------TTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTT------------TEEEEE
T ss_pred -------------CCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCC------------CeEEEE
Confidence 125788888865 22333 323 5667888988888898776442 489999
Q ss_pred ecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEE
Q 005240 215 TTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEIL 294 (706)
Q Consensus 215 ~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l 294 (706)
+++++..+.+..... ..++.++..|.+.. |||... +. ...|++++. ++...+.+
T Consensus 187 ~~~g~~~~~l~~~~~------------~~P~~iavdp~~g~-ly~td~---~~-------~~~I~~~~~---dG~~~~~~ 240 (400)
T 3p5b_L 187 DTKGVKRKTLFRENG------------SKPRAIVVDPVHGF-MYWTDW---GT-------PAKIKKGGL---NGVDIYSL 240 (400)
T ss_dssp CTTTCSEEEEEECSS------------CCEEEEEEETTTTE-EEEEEC---SS-------SCCEEEEET---TSCSCEEE
T ss_pred eCCCCceEEEEeCCC------------CCcceEEEecccCe-EEEEeC---CC-------CCEEEEEeC---CCCccEEE
Confidence 999887776654321 12457888987776 887631 11 124888888 66666666
Q ss_pred eec-ccccccceecCCCceEEEEeeccccceEEEEEcCCCC
Q 005240 295 HKL-DLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK 334 (706)
Q Consensus 295 ~~~-~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~ 334 (706)
... -.....+++++++..|+++.. ...+|+++|+++.
T Consensus 241 ~~~~l~~P~glavd~~~~~lY~aD~---~~~~I~~~d~dG~ 278 (400)
T 3p5b_L 241 VTENIQWPNGITLDLLSGRLYWVDS---KLHSISSIDVNGG 278 (400)
T ss_dssp ECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSC
T ss_pred EECCCCceEEEEEEeCCCEEEEEEC---CCCEEEEEeCCCC
Confidence 443 245667899999998998742 3457999999874
|
| >2d81_A PHB depolymerase; alpha/beta hydrolase fold, circular permutation, hydrolase; HET: NAG RB3; 1.66A {Penicillium funiculosum} SCOP: c.69.1.37 PDB: 2d80_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=5.4e-08 Score=98.22 Aligned_cols=101 Identities=15% Similarity=0.084 Sum_probs=75.4
Q ss_pred CCCCCCcEEEEEechHHHHHHHHHHhCCCcee-EEEeccCCC-CC--------------C--------------------
Q 005240 597 GVADPSRIAVGGHSYGAFMTAHLLAHAPHLFC-CGIARSGSY-NK--------------T-------------------- 640 (706)
Q Consensus 597 ~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~-a~v~~~~~~-d~--------------~-------------------- 640 (706)
..||++||+|+|+|+||+||+.++.++|++|+ +++++++.. .. .
T Consensus 6 ~~iD~~RI~v~G~S~GG~mA~~~a~~~p~~fa~g~~v~ag~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 85 (318)
T 2d81_A 6 FNVNPNSVSVSGLASGGYMAAQLGVAYSDVFNVGFGVFAGGPYDCARNQYYTSCMYNGYPSITTPTANMKSWSGNQIASV 85 (318)
T ss_dssp CCEEEEEEEEEEETHHHHHHHHHHHHTTTTSCSEEEEESCCCTTTTSSSCGGGGSTTCCCCCHHHHHHHHHHBTTTBCCG
T ss_pred cCcCcceEEEEEECHHHHHHHHHHHHCchhhhccceEEecccccccchHHHHHHhhccCCCCCCHHHHHHHhhcccCChh
Confidence 34899999999999999999999999999999 877666521 00 0
Q ss_pred ----CCCcc------------chHHHHHHHHHhCC--CcEEEEEeCCCCccCCCccc------------------HHHHH
Q 005240 641 ----LTPFG------------FQAERFFDALKGHG--ALSRLVLLPFEHHVYAAREN------------------VMHVI 684 (706)
Q Consensus 641 ----~~~~~------------~~~~~~~~~l~~~~--~~~~~~~~~~~~H~~~~~~~------------------~~~~~ 684 (706)
..|.. -+.++++++|+..+ .+++++++++++|.+..... .....
T Consensus 86 ~~l~~~Pvli~HG~~D~vVP~~~s~~~~~~L~~~g~~~~ve~~~~~g~gH~~~~~~~~~~~~~c~~~~~pyi~~~~~d~~ 165 (318)
T 2d81_A 86 ANLGQRKIYMWTGSSDTTVGPNVMNQLKAQLGNFDNSANVSYVTTTGAVHTFPTDFNGAGDNSCSLSTSPYISNCNYDGA 165 (318)
T ss_dssp GGGGGCEEEEEEETTCCSSCHHHHHHHHHHHTTTSCGGGEEEEEETTCCSSEEESSCCTTCCCTTSCCTTCEEECSSCHH
T ss_pred HcCCCCcEEEEeCCCCCCcCHHHHHHHHHHHHhcCCCcceEEEEeCCCCCCCccCCcccCccccccCCCCcccCCCChHH
Confidence 00110 03348999999887 37999999999999753322 25778
Q ss_pred HHHHHHHHHHhcc
Q 005240 685 WETDRWLQKYCLS 697 (706)
Q Consensus 685 ~~~~~f~~~~l~~ 697 (706)
.+|++||...+.+
T Consensus 166 ~~i~~ff~g~~~~ 178 (318)
T 2d81_A 166 GAALKWIYGSLNA 178 (318)
T ss_dssp HHHHHHHHSSCCC
T ss_pred HHHHHHHhccCCC
Confidence 8999999887653
|
| >3r40_A Fluoroacetate dehalogenase; FACD, defluorinase, alpha/beta hydrolase, hydrolase; 1.05A {Rhodopseudomonas palustris} PDB: 3r3w_A 3r3x_A 3r3v_A 3r3u_A 3r3z_A 3r41_A 3r3y_A | Back alignment and structure |
|---|
Probab=98.58 E-value=7.2e-07 Score=89.80 Aligned_cols=113 Identities=15% Similarity=0.040 Sum_probs=78.2
Q ss_pred ccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCC
Q 005240 489 RKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIG 568 (706)
Q Consensus 489 ~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g 568 (706)
..+|..++....- + -|.||++||.+.. ...+ ...+..|++ ||.|+..+.+ |
T Consensus 19 ~~~g~~l~~~~~g-------~---~~~vv~lHG~~~~-----------~~~~----~~~~~~l~~-~~~v~~~D~~---G 69 (306)
T 3r40_A 19 NTSSGRIFARVGG-------D---GPPLLLLHGFPQT-----------HVMW----HRVAPKLAE-RFKVIVADLP---G 69 (306)
T ss_dssp CCTTCCEEEEEEE-------C---SSEEEEECCTTCC-----------GGGG----GGTHHHHHT-TSEEEEECCT---T
T ss_pred EeCCEEEEEEEcC-------C---CCeEEEECCCCCC-----------HHHH----HHHHHHhcc-CCeEEEeCCC---C
Confidence 3478888766642 1 2679999997421 1112 134556666 9999996665 4
Q ss_pred CCCCCCc-------hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCC
Q 005240 569 EGDKLPN-------DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 636 (706)
Q Consensus 569 ~g~~~~~-------~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~ 636 (706)
+|.+... ........+|+.+.++.+ +.+++.++|||+||.+++.++.++|++++++|+.++.
T Consensus 70 ~G~S~~~~~~~~~~~~~~~~~~~~~~~~l~~l------~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~ 138 (306)
T 3r40_A 70 YGWSDMPESDEQHTPYTKRAMAKQLIEAMEQL------GHVHFALAGHNRGARVSYRLALDSPGRLSKLAVLDIL 138 (306)
T ss_dssp STTSCCCCCCTTCGGGSHHHHHHHHHHHHHHT------TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred CCCCCCCCCCcccCCCCHHHHHHHHHHHHHHh------CCCCEEEEEecchHHHHHHHHHhChhhccEEEEecCC
Confidence 4544332 223556666766666553 3468999999999999999999999999999999974
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=98.58 E-value=3.5e-06 Score=88.76 Aligned_cols=38 Identities=18% Similarity=0.226 Sum_probs=29.5
Q ss_pred eeeeecCCCCCCCC-ceEEeecccccccceecCCCceEEEEe
Q 005240 277 IIYTQPAEPAEGEK-PEILHKLDLRFRSVSWCDDSLALVNET 317 (706)
Q Consensus 277 ~l~~~d~~~~~~~~-~~~l~~~~~~~~~~~wspDg~~l~~~~ 317 (706)
.|++||+ ..++ ...+......+..++|||||+.|+..+
T Consensus 340 ~V~lwd~---~~~~~~~~~~~~~~~V~svafspdG~~LA~as 378 (393)
T 4gq1_A 340 LIQLINT---YEKDSNSIPIQLGMPIVDFCWHQDGSHLAIAT 378 (393)
T ss_dssp EEEEEET---TCTTCCEEEEECSSCEEEEEECTTSSEEEEEE
T ss_pred EEEEEEC---CCCcEEEEecCCCCcEEEEEEcCCCCEEEEEe
Confidence 5889998 4444 344556677899999999999999875
|
| >2wue_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrolase BPHD; HET: KEK; 1.80A {Mycobacterium tuberculosis} PDB: 2wud_A* 2wuf_A* 2wug_A* 2vf2_A | Back alignment and structure |
|---|
Probab=98.56 E-value=6e-07 Score=90.37 Aligned_cols=118 Identities=15% Similarity=0.095 Sum_probs=77.6
Q ss_pred cCC-eEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCC
Q 005240 490 KDG-VPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIG 568 (706)
Q Consensus 490 ~dg-~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g 568 (706)
.+| ..++....-+ ++.|.||++||.+.+. .++..|. .....|++. |.|++.+.+ |
T Consensus 20 ~~g~~~l~y~~~G~--------g~~~~vvllHG~~pg~--------~~~~~w~----~~~~~L~~~-~~via~Dl~---G 75 (291)
T 2wue_A 20 VDGPLKLHYHEAGV--------GNDQTVVLLHGGGPGA--------ASWTNFS----RNIAVLARH-FHVLAVDQP---G 75 (291)
T ss_dssp SSSEEEEEEEEECT--------TCSSEEEEECCCCTTC--------CHHHHTT----TTHHHHTTT-SEEEEECCT---T
T ss_pred eCCcEEEEEEecCC--------CCCCcEEEECCCCCcc--------chHHHHH----HHHHHHHhc-CEEEEECCC---C
Confidence 478 7887665421 1235789999952100 0111121 123455544 999986655 5
Q ss_pred CCCCCCc---hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCC
Q 005240 569 EGDKLPN---DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSY 637 (706)
Q Consensus 569 ~g~~~~~---~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~ 637 (706)
+|.+... ....+...+|+.+.++.+ +.+++.++||||||.+++.++.++|++++++|+.++..
T Consensus 76 ~G~S~~~~~~~~~~~~~a~dl~~~l~~l------~~~~~~lvGhS~Gg~ia~~~A~~~p~~v~~lvl~~~~~ 141 (291)
T 2wue_A 76 YGHSDKRAEHGQFNRYAAMALKGLFDQL------GLGRVPLVGNALGGGTAVRFALDYPARAGRLVLMGPGG 141 (291)
T ss_dssp STTSCCCSCCSSHHHHHHHHHHHHHHHH------TCCSEEEEEETHHHHHHHHHHHHSTTTEEEEEEESCSS
T ss_pred CCCCCCCCCCCcCHHHHHHHHHHHHHHh------CCCCeEEEEEChhHHHHHHHHHhChHhhcEEEEECCCC
Confidence 5655432 224556677777766655 23689999999999999999999999999999998753
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.56 E-value=2e-05 Score=80.05 Aligned_cols=179 Identities=12% Similarity=-0.041 Sum_probs=117.1
Q ss_pred eeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhc
Q 005240 62 LRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNL 141 (706)
Q Consensus 62 ~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (706)
..|.++++++++...+...... +..+.|++++..||+.-.
T Consensus 10 ~~I~~i~~~~~~~~~~~~~~~~-----p~g~~~d~~~~~ly~~D~----------------------------------- 49 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSLIPNLRN-----VVALDTEVASNRIYWSDL----------------------------------- 49 (316)
T ss_dssp SSEEEEETTSCCCEEEECSCSS-----EEEEEEETTTTEEEEEET-----------------------------------
T ss_pred CeEEEEECCCcceEehhcCCCc-----eEEEEEEeCCCEEEEEEC-----------------------------------
Confidence 5799999998876665432221 567899998888887631
Q ss_pred cCCchhhhhhhhcccceEEEEccCC-----Cceec-CCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEE
Q 005240 142 LKDEYDESLFDYYTTAQLVLGSLDG-----TAKDF-GTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVW 214 (706)
Q Consensus 142 ~~~~~d~~~~~~~~~~~l~~~~l~g-----~~~~l-t~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~ 214 (706)
....|++++++| ..+.+ ... .....+++.+.++.|+++... ...|.++
T Consensus 50 -------------~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~------------~~~I~~~ 104 (316)
T 1ijq_A 50 -------------SQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSV------------LGTVSVA 104 (316)
T ss_dssp -------------TTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETT------------TTEEEEE
T ss_pred -------------CCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECC------------CCEEEEE
Confidence 125788888854 22332 222 455688898888889877543 2489999
Q ss_pred ecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEE
Q 005240 215 TTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEIL 294 (706)
Q Consensus 215 ~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l 294 (706)
+++++..+.+..... ..+..++..|++.. |||... +. ...|++++. ++...+.+
T Consensus 105 ~~~g~~~~~~~~~~~------------~~P~~iavdp~~g~-ly~~d~---~~-------~~~I~~~~~---dG~~~~~~ 158 (316)
T 1ijq_A 105 DTKGVKRKTLFRENG------------SKPRAIVVDPVHGF-MYWTDW---GT-------PAKIKKGGL---NGVDIYSL 158 (316)
T ss_dssp ETTSSSEEEEEECTT------------CCEEEEEEETTTTE-EEEEEC---SS-------SCEEEEEET---TSCCEEEE
T ss_pred eCCCCceEEEEECCC------------CCcceEEeCCCCCE-EEEEcc---CC-------CCeEEEEcC---CCCCeEEE
Confidence 999877666654221 12447889987776 887631 11 135888887 55555555
Q ss_pred eec-ccccccceecCCCceEEEEeeccccceEEEEEcCCCC
Q 005240 295 HKL-DLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK 334 (706)
Q Consensus 295 ~~~-~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~ 334 (706)
... -.....++|++++..|+++.. ...+|+++|+++.
T Consensus 159 ~~~~~~~P~gla~d~~~~~lY~~D~---~~~~I~~~d~dg~ 196 (316)
T 1ijq_A 159 VTENIQWPNGITLDLLSGRLYWVDS---KLHSISSIDVNGG 196 (316)
T ss_dssp ECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSC
T ss_pred EECCCCCceEEEEeccCCEEEEEEC---CCCeEEEEecCCC
Confidence 432 334567889999988988642 3457999999873
|
| >1xkl_A SABP2, salicylic acid-binding protein 2; alpha-beta protein, structural genomics, protein structure initiative, PSI; HET: STH; 2.00A {Nicotiana tabacum} SCOP: c.69.1.20 PDB: 1y7i_A* 1y7h_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=3.3e-07 Score=91.28 Aligned_cols=99 Identities=12% Similarity=0.078 Sum_probs=68.8
Q ss_pred eEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCCCCch---hhHHHHHHHHHHHH
Q 005240 514 PCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPND---RFVEQLVSSAEAAV 590 (706)
Q Consensus 514 p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~---~~~~~~~~D~~~~~ 590 (706)
|.||++||.+.. ...|. .....|++.||.|+.++-+ |+|.+.... ...+...+|+.+.+
T Consensus 5 ~~vvllHG~~~~-----------~~~w~----~~~~~L~~~g~rVia~Dl~---G~G~S~~~~~~~~~~~~~a~dl~~~l 66 (273)
T 1xkl_A 5 KHFVLVHGACHG-----------GWSWY----KLKPLLEAAGHKVTALDLA---ASGTDLRKIEELRTLYDYTLPLMELM 66 (273)
T ss_dssp CEEEEECCTTCC-----------GGGGT----THHHHHHHTTCEEEECCCT---TSTTCCCCGGGCCSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCC-----------cchHH----HHHHHHHhCCCEEEEecCC---CCCCCccCcccccCHHHHHHHHHHHH
Confidence 568889996421 11121 3456778899999996554 566664321 23555666666655
Q ss_pred HHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccC
Q 005240 591 EEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSG 635 (706)
Q Consensus 591 ~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~ 635 (706)
+.+ +. .+++.+.||||||++++.++.++|++++++|..++
T Consensus 67 ~~l---~~--~~~~~lvGhSmGG~va~~~a~~~P~~v~~lvl~~~ 106 (273)
T 1xkl_A 67 ESL---SA--DEKVILVGHSLGGMNLGLAMEKYPQKIYAAVFLAA 106 (273)
T ss_dssp HTS---CS--SSCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESC
T ss_pred HHh---cc--CCCEEEEecCHHHHHHHHHHHhChHhheEEEEEec
Confidence 433 21 26899999999999999999999999999998775
|
| >2q0x_A Protein DUF1749, uncharacterized protein; alpha/beta hydrolase fold, structural genomics, structural G of pathogenic protozoa consortium; 2.20A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=98.55 E-value=3.7e-07 Score=93.91 Aligned_cols=127 Identities=13% Similarity=0.125 Sum_probs=81.5
Q ss_pred EEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcC
Q 005240 483 EMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGP 562 (706)
Q Consensus 483 ~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~ 562 (706)
+.+.+.. + ..+....+-|.. +. .|+||++||-+. +...+. +....+..| +.||.|+..+
T Consensus 16 ~~~~~~~-~-~~~~y~~~g~~~---~~---~~~vvllHG~~~-----------~~~~~~-~~~~l~~~L-~~g~~Vi~~D 74 (335)
T 2q0x_A 16 HLFTYYK-D-PYCKIPVFMMNM---DA---RRCVLWVGGQTE-----------SLLSFD-YFTNLAEEL-QGDWAFVQVE 74 (335)
T ss_dssp EEEEEEE-E-TTEEEEEEEECT---TS---SSEEEEECCTTC-----------CTTCST-THHHHHHHH-TTTCEEEEEC
T ss_pred EEEecCC-C-CceeEEEeccCC---CC---CcEEEEECCCCc-----------cccchh-HHHHHHHHH-HCCcEEEEEe
Confidence 4444554 3 455555555321 11 367888999421 111110 001233444 7899999864
Q ss_pred CC-CcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHH--hCCCceeEEEeccCCC
Q 005240 563 SI-PIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLA--HAPHLFCCGIARSGSY 637 (706)
Q Consensus 563 ~~-~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~--~~p~~~~a~v~~~~~~ 637 (706)
.+ ..+|+|.+. ......|+.++++++.+. .+..++.++||||||.+++.++. ++|++++++|+.+|..
T Consensus 75 l~~D~~G~G~S~-----~~~~~~d~~~~~~~l~~~--l~~~~~~LvGhSmGG~iAl~~A~~~~~p~rV~~lVL~~~~~ 145 (335)
T 2q0x_A 75 VPSGKIGSGPQD-----HAHDAEDVDDLIGILLRD--HCMNEVALFATSTGTQLVFELLENSAHKSSITRVILHGVVC 145 (335)
T ss_dssp CGGGBTTSCSCC-----HHHHHHHHHHHHHHHHHH--SCCCCEEEEEEGGGHHHHHHHHHHCTTGGGEEEEEEEEECC
T ss_pred ccCCCCCCCCcc-----ccCcHHHHHHHHHHHHHH--cCCCcEEEEEECHhHHHHHHHHHhccchhceeEEEEECCcc
Confidence 32 345777652 234567888888888774 35579999999999999999998 5799999999988753
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=98.55 E-value=6.7e-05 Score=80.21 Aligned_cols=297 Identities=13% Similarity=0.023 Sum_probs=156.0
Q ss_pred cceeEeecCCCCCCCCeeeeecCCC-CCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCc
Q 005240 5 TGIGIHRLLPDDSLGPEKEVHGYPD-GAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~i~~~~~-~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~ 83 (706)
..|.+.++.. ++.... +.. ...+..+.|+ ++.|+... ....|.++|+++++..........
T Consensus 139 g~i~vwd~~~----~~~~~~--~~~h~~~v~~~~~~--~~~l~s~~----------~dg~i~vwd~~~~~~~~~~~~h~~ 200 (445)
T 2ovr_B 139 NTLKVWSAVT----GKCLRT--LVGHTGGVWSSQMR--DNIIISGS----------TDRTLKVWNAETGECIHTLYGHTS 200 (445)
T ss_dssp SCEEEEETTT----CCEEEE--CCCCSSCEEEEEEE--TTEEEEEE----------TTSCEEEEETTTTEEEEEECCCSS
T ss_pred CcEEEEECCC----CcEEEE--EcCCCCCEEEEEec--CCEEEEEe----------CCCeEEEEECCcCcEEEEECCCCC
Confidence 3577888866 543332 222 2246677776 55665543 235677778887765544322211
Q ss_pred cccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEc
Q 005240 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (706)
Q Consensus 84 ~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~ 163 (706)
.+..+.|+ ++.|+..+. .+.|.+++
T Consensus 201 ----~v~~~~~~--~~~l~s~s~-------------------------------------------------dg~i~~wd 225 (445)
T 2ovr_B 201 ----TVRCMHLH--EKRVVSGSR-------------------------------------------------DATLRVWD 225 (445)
T ss_dssp ----CEEEEEEE--TTEEEEEET-------------------------------------------------TSEEEEEE
T ss_pred ----cEEEEEec--CCEEEEEeC-------------------------------------------------CCEEEEEE
Confidence 25566664 555665532 15788888
Q ss_pred c-CCCc-eecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeE-EcccCCCCCCCCcccCc
Q 005240 164 L-DGTA-KDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR-ELCDLPPAEDIPVCYNS 239 (706)
Q Consensus 164 l-~g~~-~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~~~~~p~~~~~ 239 (706)
+ +++. ..+... ..+..+.| ||+.|+..+.. ..|.+|++.+++.. .+....
T Consensus 226 ~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d-------------g~i~iwd~~~~~~~~~~~~~~----------- 279 (445)
T 2ovr_B 226 IETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYD-------------FMVKVWDPETETCLHTLQGHT----------- 279 (445)
T ss_dssp SSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETT-------------SCEEEEEGGGTEEEEEECCCS-----------
T ss_pred CCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCC-------------CEEEEEECCCCcEeEEecCCC-----------
Confidence 8 4543 333333 56667777 88888766543 37999999865433 332211
Q ss_pred cCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCce-EEeecccccccceecCCCceEEEEee
Q 005240 240 VREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPE-ILHKLDLRFRSVSWCDDSLALVNETW 318 (706)
Q Consensus 240 ~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~-~l~~~~~~~~~~~wspDg~~l~~~~~ 318 (706)
..+..+.| |+.. |+.. .. .+.|.++|+ .+++.. .+......+..+.+ ++..|+..+.
T Consensus 280 --~~v~~~~~--~~~~-l~~~-~~-----------d~~i~i~d~---~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~ 337 (445)
T 2ovr_B 280 --NRVYSLQF--DGIH-VVSG-SL-----------DTSIRVWDV---ETGNCIHTLTGHQSLTSGMEL--KDNILVSGNA 337 (445)
T ss_dssp --SCEEEEEE--CSSE-EEEE-ET-----------TSCEEEEET---TTCCEEEEECCCCSCEEEEEE--ETTEEEEEET
T ss_pred --CceEEEEE--CCCE-EEEE-eC-----------CCeEEEEEC---CCCCEEEEEcCCcccEEEEEE--eCCEEEEEeC
Confidence 11234555 6664 4422 11 124788888 444433 33334444444444 5666666542
Q ss_pred ccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCcee
Q 005240 319 YKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLD 398 (706)
Q Consensus 319 ~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~ 398 (706)
...|.++|+.++ +......... ...........++++|+.... + ..+.
T Consensus 338 ----dg~i~vwd~~~~--~~~~~~~~~~-----~~~~~v~~~~~~~~~l~s~~~-------------d--------g~v~ 385 (445)
T 2ovr_B 338 ----DSTVKIWDIKTG--QCLQTLQGPN-----KHQSAVTCLQFNKNFVITSSD-------------D--------GTVK 385 (445)
T ss_dssp ----TSCEEEEETTTC--CEEEEECSTT-----SCSSCEEEEEECSSEEEEEET-------------T--------SEEE
T ss_pred ----CCeEEEEECCCC--cEEEEEccCC-----CCCCCEEEEEECCCEEEEEeC-------------C--------CeEE
Confidence 224666777663 2222222110 001111122335666655431 1 1466
Q ss_pred eeecCCCceeeeec-ccchhhhhhhhhhccCCCceecccCCCEEEEEEecCCCCcEEEEEECCC
Q 005240 399 LFDINTGSKERIWE-SNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPL 461 (706)
Q Consensus 399 ~~d~~~g~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~p~~v~~~~~~~ 461 (706)
.+|+.+|+..+... .... ..........|+||+..++....+...+..++++|+..
T Consensus 386 iwd~~~~~~~~~~~~~~~~-------~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 386 LWDLKTGEFIRNLVTLESG-------GSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp EEETTTCCEEEEEEECTTG-------GGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred EEECCCCceeeeeeccccC-------CCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 67887776544331 1100 01112235789999876666655655578899998754
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.53 E-value=2.3e-05 Score=82.05 Aligned_cols=210 Identities=12% Similarity=0.069 Sum_probs=133.2
Q ss_pred CCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCC
Q 005240 19 GPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNS 98 (706)
Q Consensus 19 g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg 98 (706)
+..+.+. +.......+.|.|++.+|+++. .....|++++++++..+.+...... ....+++.+.+
T Consensus 106 ~~~~~~~--~~~~~~~gl~~d~~~~~ly~~D---------~~~~~I~r~~~~g~~~~~~~~~~~~----~p~glavd~~~ 170 (386)
T 3v65_B 106 SEYTLLL--NNLENAIALDFHHRRELVFWSD---------VTLDRILRANLNGSNVEEVVSTGLE----SPGGLAVDWVH 170 (386)
T ss_dssp CCCEEEE--CSCSCEEEEEEETTTTEEEEEE---------TTTTEEEEEETTSCCEEEEECSSCS----CCCCEEEETTT
T ss_pred CcEEEEe--cCCCccEEEEEecCCCeEEEEe---------CCCCcEEEEecCCCCcEEEEeCCCC----CccEEEEEeCC
Confidence 4444443 2333567889999999997764 3346899999998876655322211 14577888888
Q ss_pred cEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCC-CceecC-CC-c
Q 005240 99 TLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TAKDFG-TP-A 175 (706)
Q Consensus 99 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g-~~~~lt-~~-~ 175 (706)
..||++-. ....|++++++| ..+.+. .. .
T Consensus 171 g~lY~~d~------------------------------------------------~~~~I~~~~~dg~~~~~l~~~~l~ 202 (386)
T 3v65_B 171 DKLYWTDS------------------------------------------------GTSRIEVANLDGAHRKVLLWQSLE 202 (386)
T ss_dssp TEEEEEET------------------------------------------------TTTEEEECBTTSCSCEEEECSSCS
T ss_pred CeEEEEcC------------------------------------------------CCCeEEEEeCCCCceEEeecCCCC
Confidence 88887631 125788888887 333333 23 5
Q ss_pred eEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCc
Q 005240 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPS 255 (706)
Q Consensus 176 ~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~ 255 (706)
....+++.|++.+|+++.... ...|+++++++...+.+..... ..+..++|+|+++.
T Consensus 203 ~P~giavdp~~g~ly~td~~~-----------~~~I~r~~~dG~~~~~~~~~~~------------~~PnGlavd~~~~~ 259 (386)
T 3v65_B 203 KPRAIALHPMEGTIYWTDWGN-----------TPRIEASSMDGSGRRIIADTHL------------FWPNGLTIDYAGRR 259 (386)
T ss_dssp CEEEEEEETTTTEEEEEECSS-----------SCEEEEEETTSCSCEEEECSSC------------SCEEEEEEEGGGTE
T ss_pred CCcEEEEEcCCCeEEEeccCC-----------CCEEEEEeCCCCCcEEEEECCC------------CCeeeEEEeCCCCE
Confidence 678899999999998876442 2489999999887666644321 11347899998887
Q ss_pred eEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeec-ccccccceecCCCceEEEEeeccccceEEEEEcCCCC
Q 005240 256 TLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL-DLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK 334 (706)
Q Consensus 256 ~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~-~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~ 334 (706)
|||+.. ....|++++. +++..+.+... ......++. ++..|+++.+ ...+|++++..++
T Consensus 260 -lY~aD~-----------~~~~I~~~d~---dG~~~~~~~~~~~~~P~giav--~~~~ly~td~---~~~~V~~~~~~~G 319 (386)
T 3v65_B 260 -MYWVDA-----------KHHVIERANL---DGSHRKAVISQGLPHPFAITV--FEDSLYWTDW---HTKSINSANKFTG 319 (386)
T ss_dssp -EEEEET-----------TTTEEEEECT---TSCSCEEEECSSCSSEEEEEE--ETTEEEEEET---TTTEEEEEETTTC
T ss_pred -EEEEEC-----------CCCEEEEEeC---CCCeeEEEEECCCCCceEEEE--ECCEEEEeeC---CCCeEEEEECCCC
Confidence 887732 1235888888 56555555432 223344445 3335666542 3446888885443
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=98.52 E-value=5.1e-05 Score=81.11 Aligned_cols=268 Identities=13% Similarity=0.064 Sum_probs=144.8
Q ss_pred eeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCCC
Q 005240 37 SWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKT 116 (706)
Q Consensus 37 ~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~ 116 (706)
.+++||++|+.... ...|.++|+.+++.......... .+..+.|+ ++.|+..+.
T Consensus 124 ~~~~~g~~l~sg~~----------dg~i~vwd~~~~~~~~~~~~h~~----~v~~~~~~--~~~l~s~~~---------- 177 (445)
T 2ovr_B 124 CLQFCGNRIVSGSD----------DNTLKVWSAVTGKCLRTLVGHTG----GVWSSQMR--DNIIISGST---------- 177 (445)
T ss_dssp EEEEETTEEEEEET----------TSCEEEEETTTCCEEEECCCCSS----CEEEEEEE--TTEEEEEET----------
T ss_pred EEEEcCCEEEEEEC----------CCcEEEEECCCCcEEEEEcCCCC----CEEEEEec--CCEEEEEeC----------
Confidence 58889999987642 35778889888876544322211 25667776 556665532
Q ss_pred CCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCC-ceecCCC-ceEeeeeeCCCCcEEEEEe
Q 005240 117 MVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGTP-AVYTAVEPSPDQKYVLITS 193 (706)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~-~~~lt~~-~~~~~~~~SpDG~~i~~~~ 193 (706)
.+.|.++++ +++ ...+... ..+..+.|+ ++.|+..+
T Consensus 178 ---------------------------------------dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s 216 (445)
T 2ovr_B 178 ---------------------------------------DRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGS 216 (445)
T ss_dssp ---------------------------------------TSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEE
T ss_pred ---------------------------------------CCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEe
Confidence 156777888 553 3344433 567777774 56666554
Q ss_pred eccCcccccccccccceEEEEecCCCeeE-EcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCcccc
Q 005240 194 MHRPYSYKVPCARFSQKVQVWTTDGKLVR-ELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEV 272 (706)
Q Consensus 194 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~ 272 (706)
.. ..|.+|++.+++.. .+.... ..+..+.| +++. |+... .
T Consensus 217 ~d-------------g~i~~wd~~~~~~~~~~~~~~-------------~~v~~~~~--~~~~-l~~~~-~--------- 257 (445)
T 2ovr_B 217 RD-------------ATLRVWDIETGQCLHVLMGHV-------------AAVRCVQY--DGRR-VVSGA-Y--------- 257 (445)
T ss_dssp TT-------------SEEEEEESSSCCEEEEEECCS-------------SCEEEEEE--CSSC-EEEEE-T---------
T ss_pred CC-------------CEEEEEECCCCcEEEEEcCCc-------------ccEEEEEE--CCCE-EEEEc-C---------
Confidence 33 37999999865433 332221 11224455 6665 44331 1
Q ss_pred CccceeeeecCCCCCCCCc-eEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCccccccc
Q 005240 273 SPRDIIYTQPAEPAEGEKP-EILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYS 351 (706)
Q Consensus 273 ~~~~~l~~~d~~~~~~~~~-~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~ 351 (706)
.+.|.++|+ .+++. ..+......+..+.| |+..|+..+. ...|.++|+.++ +........
T Consensus 258 --dg~i~iwd~---~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~----d~~i~i~d~~~~--~~~~~~~~~------ 318 (445)
T 2ovr_B 258 --DFMVKVWDP---ETETCLHTLQGHTNRVYSLQF--DGIHVVSGSL----DTSIRVWDVETG--NCIHTLTGH------ 318 (445)
T ss_dssp --TSCEEEEEG---GGTEEEEEECCCSSCEEEEEE--CSSEEEEEET----TSCEEEEETTTC--CEEEEECCC------
T ss_pred --CCEEEEEEC---CCCcEeEEecCCCCceEEEEE--CCCEEEEEeC----CCeEEEEECCCC--CEEEEEcCC------
Confidence 124778887 44433 334445566777777 7887777652 224677777764 222222211
Q ss_pred CCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeeecccchhhhhhhhhhccCCCc
Q 005240 352 DPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGE 431 (706)
Q Consensus 352 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~ 431 (706)
......+++++++++.... + ..+..+|+.+++.......... ... ..
T Consensus 319 --~~~v~~~~~~~~~l~~~~~-------------d--------g~i~vwd~~~~~~~~~~~~~~~--------~~~--~v 365 (445)
T 2ovr_B 319 --QSLTSGMELKDNILVSGNA-------------D--------STVKIWDIKTGQCLQTLQGPNK--------HQS--AV 365 (445)
T ss_dssp --CSCEEEEEEETTEEEEEET-------------T--------SCEEEEETTTCCEEEEECSTTS--------CSS--CE
T ss_pred --cccEEEEEEeCCEEEEEeC-------------C--------CeEEEEECCCCcEEEEEccCCC--------CCC--CE
Confidence 1111233456666555431 1 1366677777765443332110 001 11
Q ss_pred eecccCCCEEEEEEecCCCCcEEEEEECCCCceeE
Q 005240 432 EDINLNQLKILTSKESKTEITQYHILSWPLKKSSQ 466 (706)
Q Consensus 432 ~~~s~Dg~~l~~~~~~~~~p~~v~~~~~~~~~~~~ 466 (706)
..++.+++.|+....+ ..|.+||+.+++...
T Consensus 366 ~~~~~~~~~l~s~~~d----g~v~iwd~~~~~~~~ 396 (445)
T 2ovr_B 366 TCLQFNKNFVITSSDD----GTVKLWDLKTGEFIR 396 (445)
T ss_dssp EEEEECSSEEEEEETT----SEEEEEETTTCCEEE
T ss_pred EEEEECCCEEEEEeCC----CeEEEEECCCCceee
Confidence 2334456655554333 469999998876543
|
| >2xmz_A Hydrolase, alpha/beta hydrolase fold family; menaquinone biosynthesis, lyase; 1.94A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.52 E-value=3.7e-07 Score=90.62 Aligned_cols=98 Identities=12% Similarity=0.075 Sum_probs=68.6
Q ss_pred eEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCCCCch---hhHHHHHHHHHHHH
Q 005240 514 PCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPND---RFVEQLVSSAEAAV 590 (706)
Q Consensus 514 p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~---~~~~~~~~D~~~~~ 590 (706)
|.||++||.+.. ...|. ..+..|++ +|.|+..+.+ |+|.+.... ...+...+|+.+.+
T Consensus 17 ~~vvllHG~~~~-----------~~~~~----~~~~~L~~-~~~vi~~Dl~---G~G~S~~~~~~~~~~~~~~~dl~~~l 77 (269)
T 2xmz_A 17 QVLVFLHGFLSD-----------SRTYH----NHIEKFTD-NYHVITIDLP---GHGEDQSSMDETWNFDYITTLLDRIL 77 (269)
T ss_dssp EEEEEECCTTCC-----------GGGGT----TTHHHHHT-TSEEEEECCT---TSTTCCCCTTSCCCHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCc-----------HHHHH----HHHHHHhh-cCeEEEecCC---CCCCCCCCCCCccCHHHHHHHHHHHH
Confidence 358899996421 11221 23455655 4999986654 556554431 24556677777766
Q ss_pred HHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCC
Q 005240 591 EEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 636 (706)
Q Consensus 591 ~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~ 636 (706)
+.+ +.+++.++||||||.+|+.++.++|++++++|+.++.
T Consensus 78 ~~l------~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~ 117 (269)
T 2xmz_A 78 DKY------KDKSITLFGYSMGGRVALYYAINGHIPISNLILESTS 117 (269)
T ss_dssp GGG------TTSEEEEEEETHHHHHHHHHHHHCSSCCSEEEEESCC
T ss_pred HHc------CCCcEEEEEECchHHHHHHHHHhCchheeeeEEEcCC
Confidence 654 3468999999999999999999999999999998864
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.51 E-value=3.2e-05 Score=78.56 Aligned_cols=220 Identities=10% Similarity=0.041 Sum_probs=136.0
Q ss_pred cceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCC----CceeecccC
Q 005240 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAET----GEAKPLFES 80 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~----g~~~~lt~~ 80 (706)
..|...+++. ++...+. +.......+.|+|++++|+++. .....|+++++++ .....+...
T Consensus 10 ~~I~~i~~~~----~~~~~~~--~~~~~p~g~~~d~~~~~ly~~D---------~~~~~I~~~~~~g~~~~~~~~~~~~~ 74 (316)
T 1ijq_A 10 HEVRKMTLDR----SEYTSLI--PNLRNVVALDTEVASNRIYWSD---------LSQRMICSTQLDRAHGVSSYDTVISR 74 (316)
T ss_dssp SSEEEEETTS----CCCEEEE--CSCSSEEEEEEETTTTEEEEEE---------TTTTEEEEEEC--------CEEEECS
T ss_pred CeEEEEECCC----cceEehh--cCCCceEEEEEEeCCCEEEEEE---------CCCCcEEEEECCCCCCCcccEEEEeC
Confidence 4566777755 5554443 3444577899999999998864 3347899999887 333333211
Q ss_pred CCccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEE
Q 005240 81 PDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLV 160 (706)
Q Consensus 81 ~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~ 160 (706)
. +. .+..+++.+.++.||++-. ....|.
T Consensus 75 ~---~~-~p~glavd~~~~~ly~~d~------------------------------------------------~~~~I~ 102 (316)
T 1ijq_A 75 D---IQ-APDGLAVDWIHSNIYWTDS------------------------------------------------VLGTVS 102 (316)
T ss_dssp S---CS-CCCEEEEETTTTEEEEEET------------------------------------------------TTTEEE
T ss_pred C---CC-CcCEEEEeecCCeEEEEEC------------------------------------------------CCCEEE
Confidence 1 11 1457788877777777621 125788
Q ss_pred EEccCC-CceecCC-C-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCccc
Q 005240 161 LGSLDG-TAKDFGT-P-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCY 237 (706)
Q Consensus 161 ~~~l~g-~~~~lt~-~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~ 237 (706)
+++++| ..+.+.. . .....+++.|++.+|+++.... ...|++++++|...+.+.....
T Consensus 103 ~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~-----------~~~I~~~~~dG~~~~~~~~~~~-------- 163 (316)
T 1ijq_A 103 VADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT-----------PAKIKKGGLNGVDIYSLVTENI-------- 163 (316)
T ss_dssp EEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSS-----------SCEEEEEETTSCCEEEEECSSC--------
T ss_pred EEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCC-----------CCeEEEEcCCCCCeEEEEECCC--------
Confidence 889987 3444432 2 5677899999999998775431 1479999999887666543221
Q ss_pred CccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecc---cccccceecCCCceEE
Q 005240 238 NSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLD---LRFRSVSWCDDSLALV 314 (706)
Q Consensus 238 ~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~---~~~~~~~wspDg~~l~ 314 (706)
..+..++|+|+++. |||+... ...|+++|. +++..+.+.... .....++. ++..|+
T Consensus 164 ----~~P~gla~d~~~~~-lY~~D~~-----------~~~I~~~d~---dg~~~~~~~~~~~~~~~P~giav--~~~~ly 222 (316)
T 1ijq_A 164 ----QWPNGITLDLLSGR-LYWVDSK-----------LHSISSIDV---NGGNRKTILEDEKRLAHPFSLAV--FEDKVF 222 (316)
T ss_dssp ----SCEEEEEEETTTTE-EEEEETT-----------TTEEEEEET---TSCSCEEEEECTTTTSSEEEEEE--ETTEEE
T ss_pred ----CCceEEEEeccCCE-EEEEECC-----------CCeEEEEec---CCCceEEEeecCCccCCcEEEEE--ECCEEE
Confidence 12347899999887 8877321 235888888 666666654432 22234444 345666
Q ss_pred EEeeccccceEEEEEcCCCC
Q 005240 315 NETWYKTSQTRTWLVCPGSK 334 (706)
Q Consensus 315 ~~~~~~~~~~~l~~~d~~~~ 334 (706)
++.. ...+|++++..++
T Consensus 223 ~~d~---~~~~V~~~~~~~g 239 (316)
T 1ijq_A 223 WTDI---INEAIFSANRLTG 239 (316)
T ss_dssp EEET---TTTEEEEEETTTC
T ss_pred EEEC---CCCeEEEEeCCCC
Confidence 6542 3457888887654
|
| >1ehy_A Protein (soluble epoxide hydrolase); alpha/beta hydrolase fold, epoxide degradation, epichlorohydrin; 2.10A {Agrobacterium tumefaciens} SCOP: c.69.1.11 | Back alignment and structure |
|---|
Probab=98.51 E-value=1.2e-06 Score=88.11 Aligned_cols=112 Identities=12% Similarity=0.018 Sum_probs=75.6
Q ss_pred cCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCC
Q 005240 490 KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGE 569 (706)
Q Consensus 490 ~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~ 569 (706)
.+|..++....- . -|.||++||.+.. ...| ......|++. |.|++++-+ |+
T Consensus 16 ~~g~~l~y~~~G-------~---g~~lvllHG~~~~-----------~~~w----~~~~~~L~~~-~~via~Dl~---G~ 66 (294)
T 1ehy_A 16 LPDVKIHYVREG-------A---GPTLLLLHGWPGF-----------WWEW----SKVIGPLAEH-YDVIVPDLR---GF 66 (294)
T ss_dssp CSSCEEEEEEEE-------C---SSEEEEECCSSCC-----------GGGG----HHHHHHHHTT-SEEEEECCT---TS
T ss_pred ECCEEEEEEEcC-------C---CCEEEEECCCCcc-----------hhhH----HHHHHHHhhc-CEEEecCCC---CC
Confidence 477788765542 1 1468889996421 1111 1234445544 999986554 55
Q ss_pred CCCCCc------hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCC
Q 005240 570 GDKLPN------DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 636 (706)
Q Consensus 570 g~~~~~------~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~ 636 (706)
|.+... ....+...+|+.+.++.+ .-+++.++||||||.+++.++.++|++++++|..++.
T Consensus 67 G~S~~~~~~~~~~~~~~~~a~dl~~ll~~l------~~~~~~lvGhS~Gg~va~~~A~~~P~~v~~lvl~~~~ 133 (294)
T 1ehy_A 67 GDSEKPDLNDLSKYSLDKAADDQAALLDAL------GIEKAYVVGHDFAAIVLHKFIRKYSDRVIKAAIFDPI 133 (294)
T ss_dssp TTSCCCCTTCGGGGCHHHHHHHHHHHHHHT------TCCCEEEEEETHHHHHHHHHHHHTGGGEEEEEEECCS
T ss_pred CCCCCCccccccCcCHHHHHHHHHHHHHHc------CCCCEEEEEeChhHHHHHHHHHhChhheeEEEEecCC
Confidence 655432 223556677777766654 2368999999999999999999999999999998863
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.50 E-value=4.4e-05 Score=78.75 Aligned_cols=210 Identities=12% Similarity=0.069 Sum_probs=132.6
Q ss_pred CCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCC
Q 005240 19 GPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNS 98 (706)
Q Consensus 19 g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg 98 (706)
...+.+. +.......+.|+|++++|+++. .....|+.++++++..+.+...... ....++..+.+
T Consensus 63 ~~~~~~~--~~~~~~~~l~~d~~~~~ly~~D---------~~~~~I~r~~~~g~~~~~~~~~~~~----~p~glavd~~~ 127 (349)
T 3v64_C 63 SEYTLLL--NNLENAIALDFHHRRELVFWSD---------VTLDRILRANLNGSNVEEVVSTGLE----SPGGLAVDWVH 127 (349)
T ss_dssp CCEEEEE--CSCSCEEEEEEETTTTEEEEEE---------TTTTEEEEEETTSCSCEEEECSSCS----CCCEEEEETTT
T ss_pred CeeEEee--cCCCceEEEEEeccccEEEEEe---------ccCCceEEEecCCCCceEEEeCCCC----CccEEEEecCC
Confidence 4444443 2333467789999999998764 3346899999998876665322111 14567888878
Q ss_pred cEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCC-CceecC-CC-c
Q 005240 99 TLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TAKDFG-TP-A 175 (706)
Q Consensus 99 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g-~~~~lt-~~-~ 175 (706)
..||++-. ....|++++++| ..+.+. .. .
T Consensus 128 g~ly~~d~------------------------------------------------~~~~I~~~~~dG~~~~~l~~~~l~ 159 (349)
T 3v64_C 128 DKLYWTDS------------------------------------------------GTSRIEVANLDGAHRKVLLWQSLE 159 (349)
T ss_dssp TEEEEEET------------------------------------------------TTTEEEEEETTSCSCEEEECTTCS
T ss_pred CeEEEEcC------------------------------------------------CCCeEEEEcCCCCceEEEEeCCCC
Confidence 78887631 125789999988 333333 23 5
Q ss_pred eEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCc
Q 005240 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPS 255 (706)
Q Consensus 176 ~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~ 255 (706)
....+++.|++..|+++.... ...|++++++|...+.+..... ..+..++++|+++.
T Consensus 160 ~P~~iavdp~~g~ly~td~~~-----------~~~I~r~~~dG~~~~~~~~~~~------------~~PnGla~d~~~~~ 216 (349)
T 3v64_C 160 KPRAIALHPMEGTIYWTDWGN-----------TPRIEASSMDGSGRRIIADTHL------------FWPNGLTIDYAGRR 216 (349)
T ss_dssp CEEEEEEETTTTEEEEEECSS-----------SCEEEEEETTSCSCEESCCSSC------------SCEEEEEEETTTTE
T ss_pred CcceEEEecCcCeEEEeccCC-----------CCEEEEEeCCCCCcEEEEECCC------------CCcceEEEeCCCCE
Confidence 678899999999998876542 2489999999887666643221 11347899998887
Q ss_pred eEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeec-ccccccceecCCCceEEEEeeccccceEEEEEcCCCC
Q 005240 256 TLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL-DLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK 334 (706)
Q Consensus 256 ~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~-~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~ 334 (706)
|||+.. ....|++++. +++..+.+... ......++. +...|+++.+ ...+|++++..++
T Consensus 217 -lY~aD~-----------~~~~I~~~~~---dG~~~~~~~~~~~~~P~giav--~~~~ly~td~---~~~~V~~~~~~~G 276 (349)
T 3v64_C 217 -MYWVDA-----------KHHVIERANL---DGSHRKAVISQGLPHPFAITV--FEDSLYWTDW---HTKSINSANKFTG 276 (349)
T ss_dssp -EEEEET-----------TTTEEEEEET---TSCSCEEEECSSCSSEEEEEE--ETTEEEEEET---TTTEEEEEETTTC
T ss_pred -EEEEEC-----------CCCEEEEEeC---CCCceEEEEeCCCCCceEEEE--ECCEEEEecC---CCCeEEEEEccCC
Confidence 887732 1135888888 56555555432 223334444 3335665532 3346888885443
|
| >3c6x_A Hydroxynitrilase; atomic resolution, hydroxynitril lyase, catalysis, protonation state, AB initio calculations, substrate bindin; 1.05A {Hevea brasiliensis} SCOP: c.69.1.20 PDB: 1sc9_A 1yas_A* 2g4l_A* 2yas_A 1qj4_A 3c6y_A 3c6z_A 3c70_A 3yas_A 4yas_A 5yas_A* 6yas_A 7yas_A* 1yb6_A* 1yb7_A 1sck_A 1sci_A 1scq_A 1dwo_A 1dwp_A ... | Back alignment and structure |
|---|
Probab=98.50 E-value=2.8e-07 Score=90.87 Aligned_cols=100 Identities=9% Similarity=-0.033 Sum_probs=69.7
Q ss_pred eEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCCCCch---hhHHHHHHHHHHHH
Q 005240 514 PCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPND---RFVEQLVSSAEAAV 590 (706)
Q Consensus 514 p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~---~~~~~~~~D~~~~~ 590 (706)
|.||++||.+.. ...|. .....|++.||.|+.++-+ |+|.+.... ...+...+|+.+.+
T Consensus 4 ~~vvllHG~~~~-----------~~~w~----~~~~~L~~~g~~via~Dl~---G~G~S~~~~~~~~~~~~~a~dl~~~l 65 (257)
T 3c6x_A 4 AHFVLIHTICHG-----------AWIWH----KLKPLLEALGHKVTALDLA---ASGVDPRQIEEIGSFDEYSEPLLTFL 65 (257)
T ss_dssp CEEEEECCTTCC-----------GGGGT----THHHHHHHTTCEEEEECCT---TSTTCSCCGGGCCSHHHHTHHHHHHH
T ss_pred CcEEEEcCCccC-----------cCCHH----HHHHHHHhCCCEEEEeCCC---CCCCCCCCcccccCHHHHHHHHHHHH
Confidence 468889996421 11121 3456788899999996554 566654321 23556666766655
Q ss_pred HHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCC
Q 005240 591 EEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 636 (706)
Q Consensus 591 ~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~ 636 (706)
+.+ + ...++.+.||||||++++.++.++|++++++|..++.
T Consensus 66 ~~l---~--~~~~~~lvGhSmGG~va~~~a~~~p~~v~~lVl~~~~ 106 (257)
T 3c6x_A 66 EAL---P--PGEKVILVGESCGGLNIAIAADKYCEKIAAAVFHNSV 106 (257)
T ss_dssp HTS---C--TTCCEEEEEEETHHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred Hhc---c--ccCCeEEEEECcchHHHHHHHHhCchhhheEEEEecc
Confidence 543 1 1258999999999999999999999999999987753
|
| >2wj6_A 1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase; oxidoreductase, alpha/beta hydrolase; HET: ZZ8 SRT; 2.00A {Arthrobacter nitroguajacolicus} PDB: 2wj4_A* 2wj3_A* 2wm2_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=6.1e-07 Score=89.53 Aligned_cols=114 Identities=17% Similarity=0.072 Sum_probs=76.3
Q ss_pred cCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCC
Q 005240 490 KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGE 569 (706)
Q Consensus 490 ~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~ 569 (706)
.+|..++.... +.+ .+ -|.||++||-+.. ...| ......| +.+|.|++++-+ |+
T Consensus 11 ~~g~~l~y~~~-~~G----~~--~p~vvllHG~~~~-----------~~~w----~~~~~~L-~~~~rvia~Dlr---Gh 64 (276)
T 2wj6_A 11 VFDNKLSYIDN-QRD----TD--GPAILLLPGWCHD-----------HRVY----KYLIQEL-DADFRVIVPNWR---GH 64 (276)
T ss_dssp ETTEEEEEEEC-CCC----CS--SCEEEEECCTTCC-----------GGGG----HHHHHHH-TTTSCEEEECCT---TC
T ss_pred eCCeEEEEEEe-cCC----CC--CCeEEEECCCCCc-----------HHHH----HHHHHHH-hcCCEEEEeCCC---CC
Confidence 47877765443 212 11 2678889995421 1111 1223334 467999986554 56
Q ss_pred CCCCCc--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhC-CCceeEEEeccC
Q 005240 570 GDKLPN--DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHA-PHLFCCGIARSG 635 (706)
Q Consensus 570 g~~~~~--~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~-p~~~~a~v~~~~ 635 (706)
|.+... ....+...+|+.+.++.+ +-+++.++||||||.+++.++.++ |++++++|...+
T Consensus 65 G~S~~~~~~~~~~~~a~dl~~ll~~l------~~~~~~lvGhSmGG~va~~~A~~~~P~rv~~lvl~~~ 127 (276)
T 2wj6_A 65 GLSPSEVPDFGYQEQVKDALEILDQL------GVETFLPVSHSHGGWVLVELLEQAGPERAPRGIIMDW 127 (276)
T ss_dssp SSSCCCCCCCCHHHHHHHHHHHHHHH------TCCSEEEEEEGGGHHHHHHHHHHHHHHHSCCEEEESC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHh------CCCceEEEEECHHHHHHHHHHHHhCHHhhceEEEecc
Confidence 665432 223667788888887776 236899999999999999999999 999999998865
|
| >2puj_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrola; C-C bond hydrolase, hydrolase; HET: HPZ; 1.57A {Burkholderia xenovorans} PDB: 2pu7_A* 3v1m_A* 3v1l_A* 2puh_A* 3v1n_A* 3v1k_A* 2og1_A 2pu5_A 2rhw_A* 2rht_A* 2ri6_A | Back alignment and structure |
|---|
Probab=98.48 E-value=4e-07 Score=91.36 Aligned_cols=79 Identities=13% Similarity=0.040 Sum_probs=58.3
Q ss_pred HHHHHCCeEEEEcCCCCcCCCCCCCCc---hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCC
Q 005240 549 LIFLARRFAVLAGPSIPIIGEGDKLPN---DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH 625 (706)
Q Consensus 549 ~~l~~~G~~v~~~~~~~~~g~g~~~~~---~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~ 625 (706)
..|++ .|.|+.++.+ |+|.+... ....+...+|+.+.++.+ +.+++.++||||||.+++.++.++|+
T Consensus 58 ~~L~~-~~~vi~~D~~---G~G~S~~~~~~~~~~~~~a~dl~~~l~~l------~~~~~~lvGhS~GG~va~~~A~~~p~ 127 (286)
T 2puj_A 58 PFVDA-GYRVILKDSP---GFNKSDAVVMDEQRGLVNARAVKGLMDAL------DIDRAHLVGNAMGGATALNFALEYPD 127 (286)
T ss_dssp HHHHT-TCEEEEECCT---TSTTSCCCCCSSCHHHHHHHHHHHHHHHT------TCCCEEEEEETHHHHHHHHHHHHCGG
T ss_pred HHHhc-cCEEEEECCC---CCCCCCCCCCcCcCHHHHHHHHHHHHHHh------CCCceEEEEECHHHHHHHHHHHhChH
Confidence 45554 4999986665 55655432 223556667776665544 34689999999999999999999999
Q ss_pred ceeEEEeccCCC
Q 005240 626 LFCCGIARSGSY 637 (706)
Q Consensus 626 ~~~a~v~~~~~~ 637 (706)
+++++|+.++..
T Consensus 128 ~v~~lvl~~~~~ 139 (286)
T 2puj_A 128 RIGKLILMGPGG 139 (286)
T ss_dssp GEEEEEEESCSC
T ss_pred hhheEEEECccc
Confidence 999999988753
|
| >1c4x_A BPHD, protein (2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoat hydrolase); PCB degradation; 2.40A {Rhodococcus SP} SCOP: c.69.1.10 | Back alignment and structure |
|---|
Probab=98.47 E-value=1.1e-06 Score=87.84 Aligned_cols=118 Identities=15% Similarity=0.106 Sum_probs=74.8
Q ss_pred ccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCC
Q 005240 489 RKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIG 568 (706)
Q Consensus 489 ~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g 568 (706)
..+|..++....-++ + .|+||++||.+.+. ..+..| ......|++ +|.|+.++.+ |
T Consensus 13 ~~~g~~l~y~~~g~~-------g-~p~vvllHG~~~~~--------~~~~~~----~~~~~~L~~-~~~vi~~D~~---G 68 (285)
T 1c4x_A 13 PSGTLASHALVAGDP-------Q-SPAVVLLHGAGPGA--------HAASNW----RPIIPDLAE-NFFVVAPDLI---G 68 (285)
T ss_dssp CCTTSCEEEEEESCT-------T-SCEEEEECCCSTTC--------CHHHHH----GGGHHHHHT-TSEEEEECCT---T
T ss_pred EECCEEEEEEecCCC-------C-CCEEEEEeCCCCCC--------cchhhH----HHHHHHHhh-CcEEEEecCC---C
Confidence 347777776554221 1 37789999952100 011111 122344544 5999986665 4
Q ss_pred CCCCCCc---hhhHHHH----HHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCC
Q 005240 569 EGDKLPN---DRFVEQL----VSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 636 (706)
Q Consensus 569 ~g~~~~~---~~~~~~~----~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~ 636 (706)
+|.+... ....+.. .+|+.+.++.+ +.+++.++||||||.+++.++.++|++++++|..++.
T Consensus 69 ~G~S~~~~~~~~~~~~~~~~~~~dl~~~l~~l------~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~ 137 (285)
T 1c4x_A 69 FGQSEYPETYPGHIMSWVGMRVEQILGLMNHF------GIEKSHIVGNSMGGAVTLQLVVEAPERFDKVALMGSV 137 (285)
T ss_dssp STTSCCCSSCCSSHHHHHHHHHHHHHHHHHHH------TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred CCCCCCCCCcccchhhhhhhHHHHHHHHHHHh------CCCccEEEEEChHHHHHHHHHHhChHHhheEEEeccC
Confidence 5554332 1234444 66666666554 2368999999999999999999999999999998864
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.47 E-value=4.2e-05 Score=79.55 Aligned_cols=254 Identities=15% Similarity=0.111 Sum_probs=125.6
Q ss_pred ccceeEeecCCCCCCCCeeeeecCC-------CCC-cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCcee
Q 005240 4 FTGIGIHRLLPDDSLGPEKEVHGYP-------DGA-KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAK 75 (706)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~i~~~~-------~~~-~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~ 75 (706)
.+.|+|.|+.++. .+.+.++.+. .+. ....+..+||| | |++...+ .++++...|.++|.++.+..
T Consensus 105 s~~I~viD~~t~p--~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i-~Vs~~g~--~~g~~~g~v~vlD~~T~~v~ 177 (462)
T 2ece_A 105 SSRIYIIDTKPNP--REPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--I-YISALGN--EEGEGPGGILMLDHYSFEPL 177 (462)
T ss_dssp TCCEEEEECCSCT--TSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--E-EEEEEEE--TTSCSCCEEEEECTTTCCEE
T ss_pred CCeEEEEECCCCC--CCceeeeeechhhcccccCCCcccceeECCCe--E-EEEcCCC--cCCCCCCeEEEEECCCCeEE
Confidence 4679999997522 3444444331 121 34455799999 3 4443221 12356688999999988754
Q ss_pred ecccCCCcccccccc-ceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhc
Q 005240 76 PLFESPDICLNAVFG-SFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYY 154 (706)
Q Consensus 76 ~lt~~~~~~~~~~~~-~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 154 (706)
.-...+.. ...+. ++.|+||++.++...- ... + .+..... ..+ ... .
T Consensus 178 ~~~~~~~~--~~~~~Yd~~~~p~~~~mvsS~w--g~p-------------------~-----~~~~g~~-~~~--~~~-~ 225 (462)
T 2ece_A 178 GKWEIDRG--DQYLAYDFWWNLPNEVLVSSEW--AVP-------------------N-----TIEDGLK-LEH--LKD-R 225 (462)
T ss_dssp EECCSBCT--TCCCCCCEEEETTTTEEEECBC--CCH-------------------H-----HHTTCCC-TTT--HHH-H
T ss_pred EEEccCCC--CccccceEEECCCCCEEEEccC--cCc-------------------c-----ccccccc-hhh--hhh-c
Confidence 43221111 11122 5788999996554310 000 0 0000000 000 000 1
Q ss_pred ccceEEEEccC-CC-ceecCCC---ceEee--eeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEccc-
Q 005240 155 TTAQLVLGSLD-GT-AKDFGTP---AVYTA--VEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCD- 226 (706)
Q Consensus 155 ~~~~l~~~~l~-g~-~~~lt~~---~~~~~--~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~- 226 (706)
...+|.+++++ ++ ...+..+ ..... ++++|||+++++...... ....++|++|..+++..+.+..
T Consensus 226 ~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~-------~~Lss~V~v~~~d~g~~~~~~vI 298 (462)
T 2ece_A 226 YGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSL-------KDLSSSIWLWFYEDGKWNAEKVI 298 (462)
T ss_dssp SCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEET-------TTCCEEEEEEEEETTEEEEEEEE
T ss_pred cCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeec-------cCCCceEEEEEecCCceeEEEEE
Confidence 23789999994 43 3334332 23333 355999999887665100 0013466665555443221111
Q ss_pred -CC---CCCCCC---cccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEee--c
Q 005240 227 -LP---PAEDIP---VCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK--L 297 (706)
Q Consensus 227 -~~---~~~~~p---~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~--~ 297 (706)
.+ .....| ..+.........+..||||+. || +++... +.|.++|+. +.+.++.+.. .
T Consensus 299 di~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrf-LY-VSnrg~----------d~VavfdV~--d~~~~~lv~~I~t 364 (462)
T 2ece_A 299 EIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKF-LY-LSLWGI----------GEVRQYDIS--NPFKPVLTGKVKL 364 (462)
T ss_dssp EECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCE-EE-EEETTT----------TEEEEEECS--STTSCEEEEEEEC
T ss_pred eCCCccccccccccccccccCCCceeEEEECCCCCE-EE-EEeCCC----------CEEEEEEec--CCCCcEEEEEEEe
Confidence 10 000111 000000123458899999997 66 444322 246666662 2334443321 1
Q ss_pred cc---------------ccccceecCCCceEEEEe
Q 005240 298 DL---------------RFRSVSWCDDSLALVNET 317 (706)
Q Consensus 298 ~~---------------~~~~~~wspDg~~l~~~~ 317 (706)
.+ ....+.+||||++|+++.
T Consensus 365 GG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 365 GGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp BTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 11 257788999999998875
|
| >1ys1_X Lipase; CIS peptide Leu 234, Ca2+ ION, inhibitor hexylphosphonic acid (R) 2-methyl-3-phenylpropyl ester, hydrolase; HET: 2HR; 1.10A {Burkholderia cepacia} PDB: 1ys2_X* 4lip_D 1hqd_A 2lip_A 1oil_A* 3lip_A 2nw6_A 5lip_A* 1cvl_A 2es4_A 1tah_B 1qge_D 1qge_E | Back alignment and structure |
|---|
Probab=98.47 E-value=1.1e-06 Score=89.32 Aligned_cols=84 Identities=17% Similarity=0.131 Sum_probs=62.1
Q ss_pred hHHHHHHHCCeEEEEcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCC
Q 005240 546 TSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH 625 (706)
Q Consensus 546 ~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~ 625 (706)
...+.|.++||.|+..+.+ |+|.+.......+...+|+..+++.+ +.+++.++||||||.++..++.+.|+
T Consensus 32 ~l~~~L~~~G~~V~~~d~~---g~g~s~~~~~~~~~l~~~i~~~l~~~------~~~~v~lvGHS~GG~va~~~a~~~p~ 102 (320)
T 1ys1_X 32 GIQEDLQQRGATVYVANLS---GFQSDDGPNGRGEQLLAYVKTVLAAT------GATKVNLVGHSQGGLTSRYVAAVAPD 102 (320)
T ss_dssp THHHHHHHTTCCEEECCCC---SSCCSSSTTSHHHHHHHHHHHHHHHH------CCSCEEEEEETHHHHHHHHHHHHCGG
T ss_pred HHHHHHHhCCCEEEEEcCC---CCCCCCCCCCCHHHHHHHHHHHHHHh------CCCCEEEEEECHhHHHHHHHHHhChh
Confidence 4567888999999996665 44544332333445555555555443 34689999999999999999999999
Q ss_pred ceeEEEeccCCCC
Q 005240 626 LFCCGIARSGSYN 638 (706)
Q Consensus 626 ~~~a~v~~~~~~d 638 (706)
+++++|..++...
T Consensus 103 ~V~~lV~i~~p~~ 115 (320)
T 1ys1_X 103 LVASVTTIGTPHR 115 (320)
T ss_dssp GEEEEEEESCCTT
T ss_pred hceEEEEECCCCC
Confidence 9999999998543
|
| >1tca_A Lipase; hydrolase(carboxylic esterase); HET: NAG; 1.55A {Candida antarctica} SCOP: c.69.1.17 PDB: 1lbs_A* 1lbt_A* 1tcb_A* 1tcc_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=1.2e-06 Score=89.02 Aligned_cols=120 Identities=11% Similarity=-0.061 Sum_probs=81.9
Q ss_pred CeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCC-cCCCCchHHHHHHHCCeEEEEcCCCCcCCCC
Q 005240 492 GVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNE-FSGMTPTSSLIFLARRFAVLAGPSIPIIGEG 570 (706)
Q Consensus 492 g~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g 570 (706)
+..+.+.++.|+.+..+. .+.||++||.... ... + ...+...|.++||.|+..+.+ |+|
T Consensus 13 ~~~l~~~i~~p~~~~~~~---~~~VvllHG~~~~-----------~~~~~---~~~l~~~L~~~G~~v~~~d~~---g~g 72 (317)
T 1tca_A 13 KSVLDAGLTCQGASPSSV---SKPILLVPGTGTT-----------GPQSF---DSNWIPLSTQLGYTPCWISPP---PFM 72 (317)
T ss_dssp HHHHHHTEEETTBCTTSC---SSEEEEECCTTCC-----------HHHHH---TTTHHHHHHTTTCEEEEECCT---TTT
T ss_pred HHHHhheeeCCCCCCCCC---CCeEEEECCCCCC-----------cchhh---HHHHHHHHHhCCCEEEEECCC---CCC
Confidence 345666788898765332 2457889995311 011 1 113456778899999987665 344
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCC---CceeEEEeccCCCC
Q 005240 571 DKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAP---HLFCCGIARSGSYN 638 (706)
Q Consensus 571 ~~~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p---~~~~a~v~~~~~~d 638 (706)
... ......++.+.++++.++. ..+++.++||||||.++.+++.+.| ++++++|+.++...
T Consensus 73 ~~~-----~~~~~~~l~~~i~~~~~~~--g~~~v~lVGhS~GG~va~~~~~~~~~~~~~v~~lV~l~~~~~ 136 (317)
T 1tca_A 73 LND-----TQVNTEYMVNAITALYAGS--GNNKLPVLTWSQGGLVAQWGLTFFPSIRSKVDRLMAFAPDYK 136 (317)
T ss_dssp CSC-----HHHHHHHHHHHHHHHHHHT--TSCCEEEEEETHHHHHHHHHHHHCGGGTTTEEEEEEESCCTT
T ss_pred CCc-----HHHHHHHHHHHHHHHHHHh--CCCCEEEEEEChhhHHHHHHHHHcCccchhhhEEEEECCCCC
Confidence 321 2234567777888887653 2378999999999999999988775 78999999998755
|
| >4i19_A Epoxide hydrolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.15A {Streptomyces carzinostaticus subsp} | Back alignment and structure |
|---|
Probab=98.44 E-value=1.8e-06 Score=90.47 Aligned_cols=118 Identities=15% Similarity=0.039 Sum_probs=78.2
Q ss_pred cCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHC---------CeEEEE
Q 005240 490 KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLAR---------RFAVLA 560 (706)
Q Consensus 490 ~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---------G~~v~~ 560 (706)
.+|..|+...+.|.+ + ..|.||++||.+.. ...+ ......|++. ||.|++
T Consensus 75 i~g~~i~~~~~~~~~--~----~~~plll~HG~~~s-----------~~~~----~~~~~~L~~~~~~~~~~~~~~~vi~ 133 (388)
T 4i19_A 75 IDGATIHFLHVRSPE--P----DATPMVITHGWPGT-----------PVEF----LDIIGPLTDPRAHGGDPADAFHLVI 133 (388)
T ss_dssp ETTEEEEEEEECCSS--T----TCEEEEEECCTTCC-----------GGGG----HHHHHHHHCGGGGTSCGGGCEEEEE
T ss_pred ECCeEEEEEEccCCC--C----CCCeEEEECCCCCC-----------HHHH----HHHHHHHhCcccccCCCCCCeEEEE
Confidence 389999988776653 1 13668889996521 1111 1334555554 999999
Q ss_pred cCCCCcCCCCCCCCch---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCC
Q 005240 561 GPSIPIIGEGDKLPND---RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSY 637 (706)
Q Consensus 561 ~~~~~~~g~g~~~~~~---~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~ 637 (706)
++.+ |+|.+.... .......+|+...++.+ ..+++.++||||||.+++.++.++|+++++++..++..
T Consensus 134 ~dl~---G~G~S~~~~~~~~~~~~~a~~~~~l~~~l------g~~~~~l~G~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 204 (388)
T 4i19_A 134 PSLP---GFGLSGPLKSAGWELGRIAMAWSKLMASL------GYERYIAQGGDIGAFTSLLLGAIDPSHLAGIHVNLLQT 204 (388)
T ss_dssp ECCT---TSGGGCCCSSCCCCHHHHHHHHHHHHHHT------TCSSEEEEESTHHHHHHHHHHHHCGGGEEEEEESSCCC
T ss_pred EcCC---CCCCCCCCCCCCCCHHHHHHHHHHHHHHc------CCCcEEEEeccHHHHHHHHHHHhChhhceEEEEecCCC
Confidence 6665 444443321 12344455554444432 33689999999999999999999999999999998643
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.44 E-value=3.6e-05 Score=78.15 Aligned_cols=180 Identities=12% Similarity=0.054 Sum_probs=116.1
Q ss_pred ceeEEEEEcCCCc--eeecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccc
Q 005240 61 KLRVWIADAETGE--AKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMT 138 (706)
Q Consensus 61 ~~~l~~~d~~~g~--~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (706)
..+|..++++++. ...+..... ....+.|.+.+..||++-.
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~~~-----~~~~ld~d~~~~~lyw~D~-------------------------------- 54 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGGLE-----DAAAVDFVFSHGLIYWSDV-------------------------------- 54 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEEEE-----EEEEEEEEGGGTEEEEEET--------------------------------
T ss_pred cCeEEEEECCCCceEEEEEecCCC-----ccEEEEEEeCCCEEEEEEC--------------------------------
Confidence 3789999998763 222211111 1346789998878887621
Q ss_pred hhccCCchhhhhhhhcccceEEEEccCCC--ce-ecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEE
Q 005240 139 DNLLKDEYDESLFDYYTTAQLVLGSLDGT--AK-DFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVW 214 (706)
Q Consensus 139 ~~~~~~~~d~~~~~~~~~~~l~~~~l~g~--~~-~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~ 214 (706)
....|++++++|. .+ .+... .....+++.+.+..|+++... ...|.++
T Consensus 55 ----------------~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~------------~~~I~~~ 106 (318)
T 3sov_A 55 ----------------SEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSE------------TNRIEVS 106 (318)
T ss_dssp ----------------TTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETT------------TTEEEEE
T ss_pred ----------------CCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECC------------CCEEEEE
Confidence 1257888988663 12 22222 455678888888899887643 2489999
Q ss_pred ecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEE
Q 005240 215 TTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEIL 294 (706)
Q Consensus 215 ~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l 294 (706)
++++...+.+..... ..+..++..|.+.. |||.... ....|++++. ++...+.+
T Consensus 107 ~~dG~~~~~l~~~~~------------~~P~giavdp~~g~-ly~td~~----------~~~~I~r~~~---dG~~~~~~ 160 (318)
T 3sov_A 107 NLDGSLRKVLFWQEL------------DQPRAIALDPSSGF-MYWTDWG----------EVPKIERAGM---DGSSRFII 160 (318)
T ss_dssp ETTSCSCEEEECSSC------------SSEEEEEEEGGGTE-EEEEECS----------SSCEEEEEET---TSCSCEEE
T ss_pred ECCCCcEEEEEeCCC------------CCccEEEEeCCCCE-EEEEecC----------CCCEEEEEEc---CCCCeEEE
Confidence 999876666643221 12447788887766 8776311 1235888888 56555555
Q ss_pred eec-ccccccceecCCCceEEEEeeccccceEEEEEcCCCC
Q 005240 295 HKL-DLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK 334 (706)
Q Consensus 295 ~~~-~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~ 334 (706)
... -.....++|++++..|+++.. ...+|+++|+++.
T Consensus 161 ~~~~l~~Pnglavd~~~~~lY~aD~---~~~~I~~~d~dG~ 198 (318)
T 3sov_A 161 INSEIYWPNGLTLDYEEQKLYWADA---KLNFIHKSNLDGT 198 (318)
T ss_dssp ECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSC
T ss_pred EECCCCCccEEEEeccCCEEEEEEC---CCCEEEEEcCCCC
Confidence 432 334567899999988998742 3457999999873
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=98.44 E-value=1.8e-05 Score=79.98 Aligned_cols=246 Identities=11% Similarity=0.066 Sum_probs=126.9
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecC-CcEEEEEecCCCC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNN-STLLIFTIPSSRR 110 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpD-g~~l~~~~~~~~~ 110 (706)
....++|+|||+ |+++.... .........|+++++++++.+.+...........+..+.+++| |+ |++...
T Consensus 19 ~~~~~~~~~~g~-l~~~~~~~--~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~-l~v~~~---- 90 (314)
T 1pjx_A 19 GAEGPVFDKNGD-FYIVAPEV--EVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQ-LFVADM---- 90 (314)
T ss_dssp TCEEEEECTTSC-EEEEETTC--EETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSE-EEEEET----
T ss_pred CccCceECCCCC-EEEEEecc--ccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCc-EEEEEC----
Confidence 456899999995 54541000 0000223579999988888776643100001112567889999 66 444321
Q ss_pred CCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCCCceec-CCC------ceEeeeeeC
Q 005240 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDF-GTP------AVYTAVEPS 183 (706)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g~~~~l-t~~------~~~~~~~~S 183 (706)
...|++++.+|+.+.+ ... ..+..++++
T Consensus 91 ---------------------------------------------~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~i~~d 125 (314)
T 1pjx_A 91 ---------------------------------------------RLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFD 125 (314)
T ss_dssp ---------------------------------------------TTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEEC
T ss_pred ---------------------------------------------CCCEEEEeCCCCEEEEEeccCCCccccCCcCEEEC
Confidence 1367778777655544 221 246688999
Q ss_pred CCCcEEEEEeeccCc---ccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeee----cCCCce
Q 005240 184 PDQKYVLITSMHRPY---SYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWR----ADKPST 256 (706)
Q Consensus 184 pDG~~i~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~s----pdg~~~ 256 (706)
|||+ |+++...... .+..........|++++.+ ++.+.+.... ..+..+.|+ |||+.
T Consensus 126 ~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~-------------~~~~~i~~~~~~d~dg~~- 189 (314)
T 1pjx_A 126 YEGN-LWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAF-------------QFPNGIAVRHMNDGRPYQ- 189 (314)
T ss_dssp TTSC-EEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEE-------------SSEEEEEEEECTTSCEEE-
T ss_pred CCCC-EEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCC-------------CCcceEEEecccCCCCCE-
Confidence 9996 4454432100 0000000112478888877 4444432211 112367899 99875
Q ss_pred EEEEEeccCCCCccccCccceeeeecCCCCCCCCce---EEeecc----cccccceecCCCceEEEEeeccccceEEEEE
Q 005240 257 LYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPE---ILHKLD----LRFRSVSWCDDSLALVNETWYKTSQTRTWLV 329 (706)
Q Consensus 257 l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~---~l~~~~----~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~ 329 (706)
|++.. .. ...|++++.+ ..++.. .+.... .....+.+++||..++... ....|+++
T Consensus 190 l~v~~-~~----------~~~i~~~~~~--~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~----~~~~i~~~ 252 (314)
T 1pjx_A 190 LIVAE-TP----------TKKLWSYDIK--GPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANW----GSSHIEVF 252 (314)
T ss_dssp EEEEE-TT----------TTEEEEEEEE--ETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEE----TTTEEEEE
T ss_pred EEEEE-CC----------CCeEEEEECC--CCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEc----CCCEEEEE
Confidence 65542 11 1246777751 123221 111111 3456678999997444322 23368999
Q ss_pred cCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEee
Q 005240 330 CPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 330 d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 371 (706)
|+++++ .......... ....+.+++||++|++..
T Consensus 253 d~~~g~--~~~~~~~~~~------~~~~i~~~~dg~~l~v~~ 286 (314)
T 1pjx_A 253 GPDGGQ--PKMRIRCPFE------KPSNLHFKPQTKTIFVTE 286 (314)
T ss_dssp CTTCBS--CSEEEECSSS------CEEEEEECTTSSEEEEEE
T ss_pred cCCCCc--EeEEEeCCCC------CceeEEECCCCCEEEEEe
Confidence 988532 2211111101 112356789998777764
|
| >3n2z_B Lysosomal Pro-X carboxypeptidase; alpha/beta hydrolase, PRCP, serine carboxypeptidase, hydrola; HET: NAG; 2.79A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.44 E-value=1.1e-06 Score=92.69 Aligned_cols=88 Identities=18% Similarity=0.191 Sum_probs=65.8
Q ss_pred HHHHHH-CCeEEEEcCCCCcCCCCCCCCch--h----------hHHHHHHHHHHHHHHHHHcC-CCCCCcEEEEEechHH
Q 005240 548 SLIFLA-RRFAVLAGPSIPIIGEGDKLPND--R----------FVEQLVSSAEAAVEEVVRRG-VADPSRIAVGGHSYGA 613 (706)
Q Consensus 548 ~~~l~~-~G~~v~~~~~~~~~g~g~~~~~~--~----------~~~~~~~D~~~~~~~l~~~~-~id~~~i~i~G~S~GG 613 (706)
...+++ .|+.|+..+. +|+|++.... . ..++.++|+...++++..+. .....++.++||||||
T Consensus 61 ~~~lA~~~~~~Vi~~Dh---Rg~G~S~p~~~~~~~~~~~l~~lt~~q~~~Dl~~~~~~l~~~~~~~~~~p~il~GhS~GG 137 (446)
T 3n2z_B 61 MWDVAEELKAMLVFAEH---RYYGESLPFGDNSFKDSRHLNFLTSEQALADFAELIKHLKRTIPGAENQPVIAIGGSYGG 137 (446)
T ss_dssp HHHHHHHHTEEEEEECC---TTSTTCCTTGGGGGSCTTTSTTCSHHHHHHHHHHHHHHHHHHSTTGGGCCEEEEEETHHH
T ss_pred HHHHHHHhCCcEEEEec---CCCCCCCCCCccccccchhhccCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEeCHHH
Confidence 344554 6889988444 4677774321 1 25678999999999998752 2233689999999999
Q ss_pred HHHHHHHHhCCCceeEEEeccCCCC
Q 005240 614 FMTAHLLAHAPHLFCCGIARSGSYN 638 (706)
Q Consensus 614 ~~a~~~~~~~p~~~~a~v~~~~~~d 638 (706)
.+|++++.++|+++.++|+.++...
T Consensus 138 ~lA~~~~~~yP~~v~g~i~ssapv~ 162 (446)
T 3n2z_B 138 MLAAWFRMKYPHMVVGALAASAPIW 162 (446)
T ss_dssp HHHHHHHHHCTTTCSEEEEETCCTT
T ss_pred HHHHHHHHhhhccccEEEEeccchh
Confidence 9999999999999999998765433
|
| >2vat_A Acetyl-COA--deacetylcephalosporin C acetyltransferase; A/B- hydrolase fold, acyltransferase, acetyl coenzyme A, antibiotic biosynthesis; HET: COA; 2.2A {Acremonium chrysogenum} SCOP: c.69.1.40 PDB: 2vav_A* 2vax_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=1.1e-06 Score=94.46 Aligned_cols=81 Identities=16% Similarity=0.151 Sum_probs=60.1
Q ss_pred HHHCCeEEEEcCCCCcCCCCCCCC-------c----------hhhHHHHHHHHHHHHHHHHHcCCCCCCc-EEEEEechH
Q 005240 551 FLARRFAVLAGPSIPIIGEGDKLP-------N----------DRFVEQLVSSAEAAVEEVVRRGVADPSR-IAVGGHSYG 612 (706)
Q Consensus 551 l~~~G~~v~~~~~~~~~g~g~~~~-------~----------~~~~~~~~~D~~~~~~~l~~~~~id~~~-i~i~G~S~G 612 (706)
|++.||.|++.+.+|. |+|.+.. . ....++.++|+.++++.+ ..++ +.++|||||
T Consensus 138 L~~~~~~Vi~~D~~G~-~~G~S~~~~~~~~~~~~~~~~~~f~~~t~~~~a~dl~~ll~~l------~~~~~~~lvGhSmG 210 (444)
T 2vat_A 138 FDTSRYFIICLNYLGS-PFGSAGPCSPDPDAEGQRPYGAKFPRTTIRDDVRIHRQVLDRL------GVRQIAAVVGASMG 210 (444)
T ss_dssp BCTTTCEEEEECCTTC-SSSSSSTTSBCTTTC--CBCGGGCCCCCHHHHHHHHHHHHHHH------TCCCEEEEEEETHH
T ss_pred hhccCCEEEEecCCCC-CCCCCCCCCCCcccccccccccccccccHHHHHHHHHHHHHhc------CCccceEEEEECHH
Confidence 4578999999777753 2444321 0 123556677777777665 2357 999999999
Q ss_pred HHHHHHHHHhCCCceeEEEeccCCCC
Q 005240 613 AFMTAHLLAHAPHLFCCGIARSGSYN 638 (706)
Q Consensus 613 G~~a~~~~~~~p~~~~a~v~~~~~~d 638 (706)
|++++.++.++|++++++|+.++...
T Consensus 211 G~ial~~A~~~p~~v~~lVli~~~~~ 236 (444)
T 2vat_A 211 GMHTLEWAFFGPEYVRKIVPIATSCR 236 (444)
T ss_dssp HHHHHHHGGGCTTTBCCEEEESCCSB
T ss_pred HHHHHHHHHhChHhhheEEEEecccc
Confidence 99999999999999999999987643
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.42 E-value=7.1e-06 Score=88.35 Aligned_cols=263 Identities=13% Similarity=-0.008 Sum_probs=133.9
Q ss_pred cceeEeecCCCCCCCCeeeeecCCCCCcccceee-C-CCCCeEEEEeec-----cc----cccccCCceeEEEEEcCCCc
Q 005240 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSW-S-PDGKRIAFSVRV-----DE----EDNVSSCKLRVWIADAETGE 73 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~-S-PDG~~laf~~~~-----~~----~~~~~~~~~~l~~~d~~~g~ 73 (706)
+.|.+.|++. .+..+|..+|.+......++ + |||++|+..... ++ .+. ......+-++|.++.+
T Consensus 112 ~rVavIdl~t----~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~-~~~~~~vtvID~~t~~ 186 (595)
T 1fwx_A 112 TRVARVRCDV----MKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV-ANYVNVFTAVDADKWE 186 (595)
T ss_dssp TEEEEEETTT----TEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG-GGEEEEEEEEETTTTE
T ss_pred CEEEEEECCC----ceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccc-cccCceEEEEECCCCe
Confidence 3478888877 77777777887777777777 6 999999444210 00 011 1344678899999875
Q ss_pred e-eecccCCCccccccccceEEecCCcEEEEEecCCCC-CCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhh
Q 005240 74 A-KPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR-DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLF 151 (706)
Q Consensus 74 ~-~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 151 (706)
. .++.-+. . ......||||+++++++..... .............+. ........ ....++..
T Consensus 187 v~~qI~Vgg-~-----pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~------V~~~~~~~---~~v~~Gk~- 250 (595)
T 1fwx_A 187 VAWQVLVSG-N-----LDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIV------VFNIAEIE---KAIAAGDY- 250 (595)
T ss_dssp EEEEEEESS-C-----CCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEE------EEEHHHHH---HHHHHTCS-
T ss_pred EEEEEEeCC-C-----ccceEECCCCCEEEEEecCcccCcchhhccccccceEE------Eeecccee---EeccCCCe-
Confidence 4 3342112 2 5677899999998877643211 100000000000000 00000000 00011110
Q ss_pred hhcccceEEEEcc-C--C-C-ceecCCCceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEccc
Q 005240 152 DYYTTAQLVLGSL-D--G-T-AKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCD 226 (706)
Q Consensus 152 ~~~~~~~l~~~~l-~--g-~-~~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~ 226 (706)
.+ -+.+-++|. + + . ...+..+....++.+||||++++.+... ...+.++|+++.+. +.+
T Consensus 251 ~~--i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~------------s~~VsVid~~~~~~--~~~ 314 (595)
T 1fwx_A 251 QE--LNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKL------------SPTVTVLDVTRFDA--VFY 314 (595)
T ss_dssp EE--ETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTT------------SSBEEEEEGGGHHH--HHH
T ss_pred eE--ECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCC------------CCeEEEEECccccc--ccc
Confidence 11 145778887 3 3 2 2344444566789999999999876554 35889999884320 000
Q ss_pred CCCCCCC-CcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCC----CCCCC-ceEEeec--c
Q 005240 227 LPPAEDI-PVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEP----AEGEK-PEILHKL--D 298 (706)
Q Consensus 227 ~~~~~~~-p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~----~~~~~-~~~l~~~--~ 298 (706)
+...... .........|++.++|+||| . +|.+...++ .+..||++. +.|.+ ...+... .
T Consensus 315 ~~l~~~~~v~~~v~vG~gP~h~aF~~dG-~-aY~t~~lds-----------qV~kwdi~~a~~~~~g~~~~~vi~kidV~ 381 (595)
T 1fwx_A 315 ENADPRSAVVAEPELGLGPLHTAFDGRG-N-AYTSLFLDS-----------QVVKWNIEDAIRAYAGEKVDPIKDKLDVH 381 (595)
T ss_dssp SCCCGGGGEEECCBCCSCEEEEEECTTS-E-EEEEETTTT-----------EEEEEEHHHHHHHHHTCSCCCEEEEEECS
T ss_pred cccCcccceEEEcCCCCCcceEEECCCC-e-EEEEEecCC-----------cEEEEEhhHhhhhhcccccceeEEEeecc
Confidence 0000000 00000111456788999999 5 665543322 355566621 00111 1222221 1
Q ss_pred cc------cccceecCCCceEEEEe
Q 005240 299 LR------FRSVSWCDDSLALVNET 317 (706)
Q Consensus 299 ~~------~~~~~wspDg~~l~~~~ 317 (706)
.. -.....+|||++|+...
T Consensus 382 yqpGh~~~~~g~t~~~DGk~l~~~N 406 (595)
T 1fwx_A 382 YQPGHLKTVMGETLDATNDWLVCLS 406 (595)
T ss_dssp SCEEEEEETTTTSTTCCSSEEEEEE
T ss_pred cccccceeccceEeCCCCCEEEEcC
Confidence 11 13446799999998753
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=98.41 E-value=3.8e-05 Score=77.64 Aligned_cols=238 Identities=10% Similarity=0.079 Sum_probs=131.0
Q ss_pred ceeEeecCCCCCCCCeeeeecCC----CCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeec-ccC
Q 005240 6 GIGIHRLLPDDSLGPEKEVHGYP----DGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPL-FES 80 (706)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~i~~~~----~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l-t~~ 80 (706)
.|++.++.. |+.+.+.. + .......+.++||+..|+.+. . ...|++++.+ ++.+.+ ...
T Consensus 47 ~i~~~d~~~----g~~~~~~~-~~~~~~~~~~~~i~~~~~~g~l~v~~---------~-~~~l~~~d~~-g~~~~~~~~~ 110 (314)
T 1pjx_A 47 EILRIDLKT----GKKTVICK-PEVNGYGGIPAGCQCDRDANQLFVAD---------M-RLGLLVVQTD-GTFEEIAKKD 110 (314)
T ss_dssp EEEEECTTT----CCEEEEEC-CEETTEECCEEEEEECSSSSEEEEEE---------T-TTEEEEEETT-SCEEECCSBC
T ss_pred EEEEEeCCC----CcEEEEEe-cccCCCCCCCceEEEecCCCcEEEEE---------C-CCCEEEEeCC-CCEEEEEecc
Confidence 456665544 77666542 1 112466788999933443432 1 2379999998 777666 422
Q ss_pred CCccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEE
Q 005240 81 PDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLV 160 (706)
Q Consensus 81 ~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~ 160 (706)
........+..+.+++||+. ++......... . . +.. ........|+
T Consensus 111 ~~~~~~~~~~~i~~d~~g~l-~v~~~~~~~~~--~-~--------------------~~~----------~~~~~~~~l~ 156 (314)
T 1pjx_A 111 SEGRRMQGCNDCAFDYEGNL-WITAPAGEVAP--A-D--------------------YTR----------SMQEKFGSIY 156 (314)
T ss_dssp TTSCBCBCCCEEEECTTSCE-EEEECBCBCTT--S-C--------------------CCB----------TTSSSCEEEE
T ss_pred CCCccccCCcCEEECCCCCE-EEEecCccccc--c-c--------------------ccc----------cccCCCCeEE
Confidence 11100112567899999975 44432110000 0 0 000 0000236799
Q ss_pred EEccCCCceecCCC-ceEeeeeeC----CCCcEEEEEeeccCcccccccccccceEEEEecC-CCeeE---EcccCCCCC
Q 005240 161 LGSLDGTAKDFGTP-AVYTAVEPS----PDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD-GKLVR---ELCDLPPAE 231 (706)
Q Consensus 161 ~~~l~g~~~~lt~~-~~~~~~~~S----pDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~---~l~~~~~~~ 231 (706)
+++.+|+...+... .....++|+ |||+.|++..... ..|++|+++ .+... .+.......
T Consensus 157 ~~~~~g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~------------~~i~~~~~~~~g~~~~~~~~~~~~~~~ 224 (314)
T 1pjx_A 157 CFTTDGQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPT------------KKLWSYDIKGPAKIENKKVWGHIPGTH 224 (314)
T ss_dssp EECTTSCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTT------------TEEEEEEEEETTEEEEEEEEEECCCCS
T ss_pred EECCCCCEEEeccCCCCcceEEEecccCCCCCEEEEEECCC------------CeEEEEECCCCCccccceEEEECCCCC
Confidence 99887765554333 445678899 9999887765432 478888876 33321 111111110
Q ss_pred CCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCc-eEEeecccccccceecCCC
Q 005240 232 DIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP-EILHKLDLRFRSVSWCDDS 310 (706)
Q Consensus 232 ~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~-~~l~~~~~~~~~~~wspDg 310 (706)
. ..+..+.++++|+ |++.... ...|+++|. ++++. ..+.........+.++|||
T Consensus 225 --~-------~~p~~i~~d~~G~--l~v~~~~-----------~~~i~~~d~---~~g~~~~~~~~~~~~~~~i~~~~dg 279 (314)
T 1pjx_A 225 --E-------GGADGMDFDEDNN--LLVANWG-----------SSHIEVFGP---DGGQPKMRIRCPFEKPSNLHFKPQT 279 (314)
T ss_dssp --S-------CEEEEEEEBTTCC--EEEEEET-----------TTEEEEECT---TCBSCSEEEECSSSCEEEEEECTTS
T ss_pred --C-------CCCCceEECCCCC--EEEEEcC-----------CCEEEEEcC---CCCcEeEEEeCCCCCceeEEECCCC
Confidence 0 1133678899986 5544211 124778887 53443 3343333566788899999
Q ss_pred ceEEEEeeccccceEEEEEcCCC
Q 005240 311 LALVNETWYKTSQTRTWLVCPGS 333 (706)
Q Consensus 311 ~~l~~~~~~~~~~~~l~~~d~~~ 333 (706)
+.|++.... ...|++++++.
T Consensus 280 ~~l~v~~~~---~~~l~~~~~~~ 299 (314)
T 1pjx_A 280 KTIFVTEHE---NNAVWKFEWQR 299 (314)
T ss_dssp SEEEEEETT---TTEEEEEECSS
T ss_pred CEEEEEeCC---CCeEEEEeCCC
Confidence 877765422 23688888775
|
| >1iup_A META-cleavage product hydrolase; aromatic compounds, cumene, isopropylbenzene, META-cleavage compound hydrolase; 1.60A {Pseudomonas fluorescens} SCOP: c.69.1.10 PDB: 1iun_A 1iuo_A 1uk6_A 1uk7_A 1uk8_A 1uk9_A 1uka_A 1ukb_A 2d0d_A | Back alignment and structure |
|---|
Probab=98.41 E-value=9.9e-07 Score=88.27 Aligned_cols=76 Identities=9% Similarity=0.083 Sum_probs=57.4
Q ss_pred HCCeEEEEcCCCCcCCCCCCCCch---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeE
Q 005240 553 ARRFAVLAGPSIPIIGEGDKLPND---RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCC 629 (706)
Q Consensus 553 ~~G~~v~~~~~~~~~g~g~~~~~~---~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a 629 (706)
+.+|.|+.++.+ |+|.+.... ...+...+|+.+.++.+ ..+++.++||||||.+++.++.++|+++++
T Consensus 52 ~~~~~vi~~Dl~---G~G~S~~~~~~~~~~~~~a~dl~~~l~~l------~~~~~~lvGhS~GG~ia~~~A~~~P~~v~~ 122 (282)
T 1iup_A 52 SKFYRVIAPDMV---GFGFTDRPENYNYSKDSWVDHIIGIMDAL------EIEKAHIVGNAFGGGLAIATALRYSERVDR 122 (282)
T ss_dssp TTTSEEEEECCT---TSTTSCCCTTCCCCHHHHHHHHHHHHHHT------TCCSEEEEEETHHHHHHHHHHHHSGGGEEE
T ss_pred ccCCEEEEECCC---CCCCCCCCCCCCCCHHHHHHHHHHHHHHh------CCCceEEEEECHhHHHHHHHHHHChHHHHH
Confidence 679999996655 556554321 23556677777766654 236899999999999999999999999999
Q ss_pred EEeccCCC
Q 005240 630 GIARSGSY 637 (706)
Q Consensus 630 ~v~~~~~~ 637 (706)
+|+.++..
T Consensus 123 lvl~~~~~ 130 (282)
T 1iup_A 123 MVLMGAAG 130 (282)
T ss_dssp EEEESCCC
T ss_pred HHeeCCcc
Confidence 99988643
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=98.40 E-value=1.6e-05 Score=80.01 Aligned_cols=145 Identities=10% Similarity=-0.041 Sum_probs=72.8
Q ss_pred ceEEEEcc-CCC-ceecCCC----ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCC
Q 005240 157 AQLVLGSL-DGT-AKDFGTP----AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPA 230 (706)
Q Consensus 157 ~~l~~~~l-~g~-~~~lt~~----~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~ 230 (706)
..|.++|+ +|+ .+.+..+ ..+...+|||||+.++..+..... ...........+.+|++.+++..........
T Consensus 203 ~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~-w~laSGs~D~tIklWd~~tgk~l~v~~~~~p 281 (356)
T 2w18_A 203 NNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAK-ESESLRSPVFQLIVINPKTTLSVGVMLYCLP 281 (356)
T ss_dssp SEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC-------------CCEEEEEEETTTTEEEEEEEECCC
T ss_pred CcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCc-ceeeccCCCcEEEEEECCCCEEEEEEEeecc
Confidence 67888899 675 4555433 234456899999998765532110 0001112236888999987764332110000
Q ss_pred CCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCc-eEEeeccccc-ccceecC
Q 005240 231 EDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP-EILHKLDLRF-RSVSWCD 308 (706)
Q Consensus 231 ~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~-~~l~~~~~~~-~~~~wsp 308 (706)
+.. . ...+..+.++.. ++ ... ....|.+||+ .+++. ..|..+...+ ..++|||
T Consensus 282 ~Gh--------~-~~~lsg~~sg~~-lA-SgS-----------~DgTIkIWDl---~tGk~l~tL~gH~~~vvs~vafSP 336 (356)
T 2w18_A 282 PGQ--------A-GRFLEGDVKDHC-AA-AIL-----------TSGTIAIWDL---LLGQCTALLPPVSDQHWSFVKWSG 336 (356)
T ss_dssp TTC--------C-CCEEEEEEETTE-EE-EEE-----------TTSCEEEEET---TTCSEEEEECCC--CCCCEEEECS
T ss_pred CCC--------c-ceeEccccCCCE-EE-EEc-----------CCCcEEEEEC---CCCcEEEEecCCCCCeEEEEEECC
Confidence 000 0 001111112222 22 111 1125889999 56654 3455444433 4589999
Q ss_pred CCceEEEEeeccccceEEEEE
Q 005240 309 DSLALVNETWYKTSQTRTWLV 329 (706)
Q Consensus 309 Dg~~l~~~~~~~~~~~~l~~~ 329 (706)
||+.|+..+. ++..+||.+
T Consensus 337 DG~~LaSGS~--D~TIklWd~ 355 (356)
T 2w18_A 337 TDSHLLAGQK--DGNIFVYHY 355 (356)
T ss_dssp SSSEEEEECT--TSCEEEEEE
T ss_pred CCCEEEEEEC--CCcEEEecC
Confidence 9999987653 355666653
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=98.40 E-value=7.3e-06 Score=92.72 Aligned_cols=179 Identities=12% Similarity=-0.049 Sum_probs=113.5
Q ss_pred eeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhc
Q 005240 62 LRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNL 141 (706)
Q Consensus 62 ~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (706)
..|+++++++++...+...... +..++|++++..||++-.
T Consensus 386 ~~I~~id~~~~~~~~~~~~~~~-----p~gla~d~~~~~Ly~sD~----------------------------------- 425 (699)
T 1n7d_A 386 HEVRKMTLDRSEYTSLIPNLRN-----VVALDTEVASNRIYWSDL----------------------------------- 425 (699)
T ss_dssp TC-CEECTTSCCEECCSCCCTT-----CCCCEEETTTTEEEECCT-----------------------------------
T ss_pred cceEEEeCCCCcceeeeccCcc-----eEEEccccccCeEEEEec-----------------------------------
Confidence 5788889888877666433222 567899998888877521
Q ss_pred cCCchhhhhhhhcccceEEEEccCC-----CceecC-CC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEE
Q 005240 142 LKDEYDESLFDYYTTAQLVLGSLDG-----TAKDFG-TP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVW 214 (706)
Q Consensus 142 ~~~~~d~~~~~~~~~~~l~~~~l~g-----~~~~lt-~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~ 214 (706)
....|++++++| ....+. .. .....+++.+.++.|+++... ...|+++
T Consensus 426 -------------~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~------------~~~I~v~ 480 (699)
T 1n7d_A 426 -------------SQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSV------------LGTVSVA 480 (699)
T ss_dssp -------------TTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTT------------TSCEEEE
T ss_pred -------------CCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEecc------------CCeEEEE
Confidence 114677777754 222222 22 345678888888888775433 2479999
Q ss_pred ecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEE
Q 005240 215 TTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEIL 294 (706)
Q Consensus 215 ~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l 294 (706)
+++++..+.+..... ..+..+++.|++.. |||... +. ...|+++++ ++...+.+
T Consensus 481 d~dg~~~~~l~~~~~------------~~P~giavDp~~g~-ly~td~---~~-------~~~I~~~~~---dG~~~~~l 534 (699)
T 1n7d_A 481 DTKGVKRKTLFREQG------------SKPRAIVVDPVHGF-MYWTDW---GT-------PAKIKKGGL---NGVDIYSL 534 (699)
T ss_dssp BSSSCCEEEECCCSS------------CCCCCEECCSSSSC-CEECCC---SS-------SCCEEBCCS---SSCCCCEE
T ss_pred ecCCCceEEEEeCCC------------CCcceEEEccCCCc-EEEccc---CC-------CCeEEEEeC---CCCCeeEE
Confidence 999887766644321 12447789998776 776631 11 135788877 55555555
Q ss_pred eec-ccccccceecCCCceEEEEeeccccceEEEEEcCCCC
Q 005240 295 HKL-DLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK 334 (706)
Q Consensus 295 ~~~-~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~ 334 (706)
... -.....++|+|++..|+++.. ...+|+++++++.
T Consensus 535 ~~~~l~~PnGlavd~~~~~LY~aD~---~~~~I~~~d~dG~ 572 (699)
T 1n7d_A 535 VTENIQWPNGITLDLLSGRLYWVDS---KLHSISSIDVNGG 572 (699)
T ss_dssp SCSSCSSCCCEEECTTTCCEEEEET---TTTEEEEECSSSS
T ss_pred EeCCCCCccEEEEeccCCEEEEEec---CCCeEEEEccCCC
Confidence 332 334567899999988988642 3457999999873
|
| >1pja_A Palmitoyl-protein thioesterase 2 precursor; hydrolase, glycoprotein, lysosome; HET: NAG; 2.70A {Homo sapiens} SCOP: c.69.1.13 | Back alignment and structure |
|---|
Probab=98.40 E-value=9.4e-07 Score=89.27 Aligned_cols=101 Identities=13% Similarity=-0.033 Sum_probs=69.7
Q ss_pred ceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHC--CeEEEEcCCCCcCCCCCCCCchhhHHHHHHHHHHHH
Q 005240 513 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLAR--RFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAV 590 (706)
Q Consensus 513 ~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~ 590 (706)
.|.||++||.+.. ...+ ...+..|++. ||.|+..+.+ |+|.+.... ...++|+.+.+
T Consensus 36 ~~~vvllHG~~~~-----------~~~~----~~~~~~L~~~~~g~~vi~~D~~---G~G~s~~~~---~~~~~~~~~~l 94 (302)
T 1pja_A 36 YKPVIVVHGLFDS-----------SYSF----RHLLEYINETHPGTVVTVLDLF---DGRESLRPL---WEQVQGFREAV 94 (302)
T ss_dssp CCCEEEECCTTCC-----------GGGG----HHHHHHHHHHSTTCCEEECCSS---CSGGGGSCH---HHHHHHHHHHH
T ss_pred CCeEEEECCCCCC-----------hhHH----HHHHHHHHhcCCCcEEEEeccC---CCccchhhH---HHHHHHHHHHH
Confidence 3678889995321 1111 2355677877 9999996665 445443322 13455555555
Q ss_pred HHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCC-ceeEEEeccCCC
Q 005240 591 EEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH-LFCCGIARSGSY 637 (706)
Q Consensus 591 ~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~-~~~a~v~~~~~~ 637 (706)
..+.+.. ..++.++||||||.+++.++.++|+ +++++|+.++..
T Consensus 95 ~~~~~~~---~~~~~lvGhS~Gg~ia~~~a~~~p~~~v~~lvl~~~~~ 139 (302)
T 1pja_A 95 VPIMAKA---PQGVHLICYSQGGLVCRALLSVMDDHNVDSFISLSSPQ 139 (302)
T ss_dssp HHHHHHC---TTCEEEEEETHHHHHHHHHHHHCTTCCEEEEEEESCCT
T ss_pred HHHhhcC---CCcEEEEEECHHHHHHHHHHHhcCccccCEEEEECCCc
Confidence 5555543 3789999999999999999999999 799999988754
|
| >3afi_E Haloalkane dehalogenase; A/B-hydrolase, hydrolase; 1.75A {Bradyrhizobium japonicum} PDB: 3a2m_A* 3a2n_A 3a2l_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=2.2e-06 Score=87.28 Aligned_cols=112 Identities=13% Similarity=0.032 Sum_probs=75.3
Q ss_pred CCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCC
Q 005240 491 DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEG 570 (706)
Q Consensus 491 dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g 570 (706)
+|..+.....-+ ++.|.||++||.+.. ...|. .....|+ ..|.|++++-+ |+|
T Consensus 15 ~g~~l~y~~~G~--------g~~~pvvllHG~~~~-----------~~~w~----~~~~~L~-~~~~via~Dl~---G~G 67 (316)
T 3afi_E 15 LGSSMAYRETGA--------QDAPVVLFLHGNPTS-----------SHIWR----NILPLVS-PVAHCIAPDLI---GFG 67 (316)
T ss_dssp TTEEEEEEEESC--------TTSCEEEEECCTTCC-----------GGGGT----TTHHHHT-TTSEEEEECCT---TST
T ss_pred CCEEEEEEEeCC--------CCCCeEEEECCCCCc-----------hHHHH----HHHHHHh-hCCEEEEECCC---CCC
Confidence 677777655422 123478899997521 11221 2344454 45999985554 566
Q ss_pred CCCCc--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccC
Q 005240 571 DKLPN--DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSG 635 (706)
Q Consensus 571 ~~~~~--~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~ 635 (706)
.+... ....+...+|+.+.++.+ +-+++.++||||||.+++.++.++|++++++|..++
T Consensus 68 ~S~~~~~~~~~~~~a~dl~~ll~~l------~~~~~~lvGhS~Gg~va~~~A~~~P~~v~~lvl~~~ 128 (316)
T 3afi_E 68 QSGKPDIAYRFFDHVRYLDAFIEQR------GVTSAYLVAQDWGTALAFHLAARRPDFVRGLAFMEF 128 (316)
T ss_dssp TSCCCSSCCCHHHHHHHHHHHHHHT------TCCSEEEEEEEHHHHHHHHHHHHCTTTEEEEEEEEE
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHc------CCCCEEEEEeCccHHHHHHHHHHCHHhhhheeeecc
Confidence 65432 223566677777766654 236899999999999999999999999999998875
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.40 E-value=4.8e-05 Score=86.56 Aligned_cols=179 Identities=12% Similarity=-0.036 Sum_probs=118.4
Q ss_pred eeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhc
Q 005240 62 LRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNL 141 (706)
Q Consensus 62 ~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (706)
..|..+++++++..++...... +..++|.+.+..||++-.
T Consensus 404 ~~Ir~i~l~~~~~~~l~~~~~~-----~~gl~~d~~~~~lY~sD~----------------------------------- 443 (791)
T 3m0c_C 404 HEVRKMTLDRSEYTSLIPNLRN-----VVALDTEVASNRIYWSDL----------------------------------- 443 (791)
T ss_dssp SSEEEECTTSCCCEEEECSCSS-----EEEEEEETTTTEEEEEET-----------------------------------
T ss_pred cceeEeeccCCcceeeecCCCc-----eEEEeecccCCeeEEeec-----------------------------------
Confidence 5688888887776666533222 557788887777777631
Q ss_pred cCCchhhhhhhhcccceEEEEccCC-----CceecCC-C-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEE
Q 005240 142 LKDEYDESLFDYYTTAQLVLGSLDG-----TAKDFGT-P-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVW 214 (706)
Q Consensus 142 ~~~~~d~~~~~~~~~~~l~~~~l~g-----~~~~lt~-~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~ 214 (706)
....|++++++| ....+.. . .....+++.+.++.||++... ...|+++
T Consensus 444 -------------~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~------------~~~I~v~ 498 (791)
T 3m0c_C 444 -------------SQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSV------------LGTVSVA 498 (791)
T ss_dssp -------------TTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETT------------TTEEEEE
T ss_pred -------------cceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecC------------CCeEEEE
Confidence 125788888865 2233322 3 456788999999999887654 2589999
Q ss_pred ecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEE
Q 005240 215 TTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEIL 294 (706)
Q Consensus 215 ~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l 294 (706)
+++|+..+.|..... ..++.++..|.+.. |||... +. ...|+++++ +|...+.|
T Consensus 499 ~ldG~~~~~l~~~~l------------~~P~gIaVDp~~g~-LYwtD~---g~-------~~~I~~~~~---dG~~~~~l 552 (791)
T 3m0c_C 499 DTKGVKRKTLFRENG------------SKPRAIVVDPVHGF-MYWTDW---GT-------PAKIKKGGL---NGVDIYSL 552 (791)
T ss_dssp ETTSSSEEEEEECTT------------CCEEEEEEETTTTE-EEEEEC---SS-------SCEEEEEET---TSCCEEEE
T ss_pred eCCCCeEEEEEeCCC------------CCcceEEEecCCCC-EEEecC---CC-------CCeEEEEec---CCCceEEE
Confidence 999888777754322 12457889988776 887731 11 135888888 66666666
Q ss_pred eecc-cccccceecCCCceEEEEeeccccceEEEEEcCCCC
Q 005240 295 HKLD-LRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK 334 (706)
Q Consensus 295 ~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~ 334 (706)
.... .....++..+++..||++.. ...+|+++++++.
T Consensus 553 v~~~l~~P~GLavD~~~~~LYwaD~---~~~~I~~~d~dG~ 590 (791)
T 3m0c_C 553 VTENIQWPNGITLDLLSGRLYWVDS---KLHSISSIDVNGG 590 (791)
T ss_dssp ECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSC
T ss_pred EeCCCCCceEEEEecCCCeEEEEeC---CCCcEEEEecCCC
Confidence 5432 45567788888888888642 3457999999884
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=7.3e-05 Score=76.38 Aligned_cols=251 Identities=10% Similarity=0.053 Sum_probs=130.2
Q ss_pred cccceeeCCCCCeEEEEeeccccc--------------cccCCceeEEEEEcCCCceeecccCCCccccccccceEEecC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEED--------------NVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNN 97 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~--------------~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpD 97 (706)
.+..++++|||+.++......... ........|+++|.++|+..+..... .+. .+..++++||
T Consensus 25 ~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~--~~~-~p~gia~d~~ 101 (329)
T 3fvz_A 25 QVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKN--LFY-LPHGLSIDTD 101 (329)
T ss_dssp CEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTT--TCS-SEEEEEECTT
T ss_pred CceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCC--ccC-CceEEEECCC
Confidence 477889999997664432100000 00001136999999888765432111 111 2567889999
Q ss_pred CcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCCC---ceecCC-
Q 005240 98 STLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGT---AKDFGT- 173 (706)
Q Consensus 98 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g~---~~~lt~- 173 (706)
|+ |++... ....|++++.+|+ ...+..
T Consensus 102 g~-l~v~d~------------------------------------------------~~~~v~~~~~~g~~~~~~~~~~~ 132 (329)
T 3fvz_A 102 GN-YWVTDV------------------------------------------------ALHQVFKLDPHSKEGPLLILGRS 132 (329)
T ss_dssp SC-EEEEET------------------------------------------------TTTEEEEECTTCSSCCSEEESBT
T ss_pred CC-EEEEEC------------------------------------------------CCCEEEEEeCCCCeEEEEEeccc
Confidence 99 454421 1257888888764 223321
Q ss_pred -------C--ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCC-CCcccCccCCC
Q 005240 174 -------P--AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAED-IPVCYNSVREG 243 (706)
Q Consensus 174 -------~--~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~-~p~~~~~~~~g 243 (706)
. .....++++|++..|+++.... ...|.+|+.++...+.+........ .+..+ ..
T Consensus 133 ~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~-----------~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~----~~ 197 (329)
T 3fvz_A 133 MQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYC-----------NSRIVQFSPSGKFVTQWGEESSGSSPRPGQF----SV 197 (329)
T ss_dssp TBCCCSTTCCSSEEEEEECTTTCCEEEEECSS-----------CCEEEEECTTSCEEEEECEECCSSSCCTTEE----SC
T ss_pred CCCCCCccccCCCcEEEEeCCCCeEEEEeCCC-----------CCeEEEEcCCCCEEEEeccCCCCCCCCCccc----CC
Confidence 1 3577899999555666655311 2479999988776665533211100 00000 12
Q ss_pred CcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCce-EEee--cccccccceecCCCceEEEEee--
Q 005240 244 MRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPE-ILHK--LDLRFRSVSWCDDSLALVNETW-- 318 (706)
Q Consensus 244 ~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~-~l~~--~~~~~~~~~wspDg~~l~~~~~-- 318 (706)
+..++++|++.. ||+. +.. ...|.+++. ++|+.. .+.. .......+.++| |..+.....
T Consensus 198 p~gia~d~~~g~-l~v~-d~~----------~~~I~~~~~---~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~ 261 (329)
T 3fvz_A 198 PHSLALVPHLDQ-LCVA-DRE----------NGRIQCFKT---DTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKPY 261 (329)
T ss_dssp EEEEEEETTTTE-EEEE-ETT----------TTEEEEEET---TTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCCC
T ss_pred CcEEEEECCCCE-EEEE-ECC----------CCEEEEEEC---CCCcEEEEEeccccCCCcceeeecC-CEEEEeCCCEE
Confidence 457899999655 6644 221 225778887 544443 3321 233455677888 433322110
Q ss_pred -ccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEee
Q 005240 319 -YKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 319 -~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 371 (706)
.......++++++.++ +....+.... .....| ..++++||| .|+++.
T Consensus 262 v~~~~~~~v~~~~~~~g--~~~~~~~~~~-~~~~~p--~~ia~~~dG-~lyvad 309 (329)
T 3fvz_A 262 FGDQEPVQGFVMNFSSG--EIIDVFKPVR-KHFDMP--HDIVASEDG-TVYIGD 309 (329)
T ss_dssp TTCSCCCCEEEEETTTC--CEEEEECCSS-SCCSSE--EEEEECTTS-EEEEEE
T ss_pred eccCCCcEEEEEEcCCC--eEEEEEcCCC-CccCCe--eEEEECCCC-CEEEEE
Confidence 0113346888887774 2333221100 000011 136678888 555554
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=6e-05 Score=77.06 Aligned_cols=228 Identities=11% Similarity=0.016 Sum_probs=124.5
Q ss_pred ceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCC--ceeecccCC--
Q 005240 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETG--EAKPLFESP-- 81 (706)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g--~~~~lt~~~-- 81 (706)
.|++.+.+. |+...............++++|||+ |+++ . .....|++++.++. ....+....
T Consensus 70 ~i~~~d~~~----g~~~~~~~~~~~~~p~gia~d~~g~-l~v~-d--------~~~~~v~~~~~~g~~~~~~~~~~~~~~ 135 (329)
T 3fvz_A 70 TILVIDPNN----AEILQSSGKNLFYLPHGLSIDTDGN-YWVT-D--------VALHQVFKLDPHSKEGPLLILGRSMQP 135 (329)
T ss_dssp CEEEECTTT----CCEEEEECTTTCSSEEEEEECTTSC-EEEE-E--------TTTTEEEEECTTCSSCCSEEESBTTBC
T ss_pred cEEEEECCC----CeEEeccCCCccCCceEEEECCCCC-EEEE-E--------CCCCEEEEEeCCCCeEEEEEecccCCC
Confidence 467776655 6655443211222566789999999 5443 2 34468999998766 333332100
Q ss_pred ---CccccccccceEEec-CCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccc
Q 005240 82 ---DICLNAVFGSFVWVN-NSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTA 157 (706)
Q Consensus 82 ---~~~~~~~~~~~~wSp-Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 157 (706)
...+. .+..++++| +|. |++.... ...
T Consensus 136 g~~~~~~~-~P~~ia~~~~~g~-lyv~d~~-----------------------------------------------~~~ 166 (329)
T 3fvz_A 136 GSDQNHFC-QPTDVAVEPSTGA-VFVSDGY-----------------------------------------------CNS 166 (329)
T ss_dssp CCSTTCCS-SEEEEEECTTTCC-EEEEECS-----------------------------------------------SCC
T ss_pred CCCccccC-CCcEEEEeCCCCe-EEEEeCC-----------------------------------------------CCC
Confidence 00011 145788999 666 4444210 114
Q ss_pred eEEEEccCCCce-ecCC---------C--ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecC-CCeeEEc
Q 005240 158 QLVLGSLDGTAK-DFGT---------P--AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD-GKLVREL 224 (706)
Q Consensus 158 ~l~~~~l~g~~~-~lt~---------~--~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~l 224 (706)
.|++++.+|+.. .+.. . .....++++||+..|+++... ...|.+|+.+ ++.++.+
T Consensus 167 ~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~------------~~~I~~~~~~~G~~~~~~ 234 (329)
T 3fvz_A 167 RIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRE------------NGRIQCFKTDTKEFVREI 234 (329)
T ss_dssp EEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETT------------TTEEEEEETTTCCEEEEE
T ss_pred eEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECC------------CCEEEEEECCCCcEEEEE
Confidence 666777666332 2211 1 246789999997788766543 2489999998 5555554
Q ss_pred ccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEe----ecccc
Q 005240 225 CDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH----KLDLR 300 (706)
Q Consensus 225 ~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~----~~~~~ 300 (706)
...... .++..+.++| + +++..+- ...........+++++. .+++..... .....
T Consensus 235 ~~~~~~-----------~~~~~~~~~p-g---~~~~~~g---~~~v~~~~~~~v~~~~~---~~g~~~~~~~~~~~~~~~ 293 (329)
T 3fvz_A 235 KHASFG-----------RNVFAISYIP-G---FLFAVNG---KPYFGDQEPVQGFVMNF---SSGEIIDVFKPVRKHFDM 293 (329)
T ss_dssp CCTTTT-----------TCEEEEEEET-T---EEEEEEC---CCCTTCSCCCCEEEEET---TTCCEEEEECCSSSCCSS
T ss_pred eccccC-----------CCcceeeecC-C---EEEEeCC---CEEeccCCCcEEEEEEc---CCCeEEEEEcCCCCccCC
Confidence 322111 1234678888 3 3333321 11111123346888887 455544432 12234
Q ss_pred cccceecCCCceEEEEeeccccceEEEEEcCCC
Q 005240 301 FRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (706)
Q Consensus 301 ~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~ 333 (706)
...++++||| .|+++. . ...+|+++++++
T Consensus 294 p~~ia~~~dG-~lyvad-~--~~~~I~~~~~~~ 322 (329)
T 3fvz_A 294 PHDIVASEDG-TVYIGD-A--HTNTVWKFTLTE 322 (329)
T ss_dssp EEEEEECTTS-EEEEEE-S--SSCCEEEEEEEE
T ss_pred eeEEEECCCC-CEEEEE-C--CCCEEEEEeCCc
Confidence 5678899999 455443 2 234577777655
|
| >1r3d_A Conserved hypothetical protein VC1974; structural genomics, hydrolase, NYSGXRC, NEW YORK SGX research center for structural genomics, PSI; 1.90A {Vibrio cholerae} SCOP: c.69.1.35 | Back alignment and structure |
|---|
Probab=98.37 E-value=9.3e-07 Score=87.48 Aligned_cols=101 Identities=16% Similarity=0.091 Sum_probs=62.2
Q ss_pred eEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCCCCch-hhHHHHHHHHHHHHHH
Q 005240 514 PCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPND-RFVEQLVSSAEAAVEE 592 (706)
Q Consensus 514 p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~-~~~~~~~~D~~~~~~~ 592 (706)
|.||++||.+.. ...| ...+..|++.||.|+..+.+ |+|.+.... ...+...+|+.+.+
T Consensus 17 ~~vvllHG~~~~-----------~~~w----~~~~~~L~~~~~~vi~~Dl~---GhG~S~~~~~~~~~~~a~~l~~~l-- 76 (264)
T 1r3d_A 17 PLVVLVHGLLGS-----------GADW----QPVLSHLARTQCAALTLDLP---GHGTNPERHCDNFAEAVEMIEQTV-- 76 (264)
T ss_dssp CEEEEECCTTCC-----------GGGG----HHHHHHHTTSSCEEEEECCT---TCSSCC-------CHHHHHHHHHH--
T ss_pred CcEEEEcCCCCC-----------HHHH----HHHHHHhcccCceEEEecCC---CCCCCCCCCccCHHHHHHHHHHHH--
Confidence 678999996321 1111 13345565589999996554 566554321 11233344444433
Q ss_pred HHHcCCCCCCcEEEEEechHHHHHHH---HHHhCCCceeEEEeccCC
Q 005240 593 VVRRGVADPSRIAVGGHSYGAFMTAH---LLAHAPHLFCCGIARSGS 636 (706)
Q Consensus 593 l~~~~~id~~~i~i~G~S~GG~~a~~---~~~~~p~~~~a~v~~~~~ 636 (706)
+.-.+++.++.++||||||.+++. ++.++|++++++|..++.
T Consensus 77 --~~l~~~~~p~~lvGhSmGG~va~~~~~~a~~~p~~v~~lvl~~~~ 121 (264)
T 1r3d_A 77 --QAHVTSEVPVILVGYSLGGRLIMHGLAQGAFSRLNLRGAIIEGGH 121 (264)
T ss_dssp --HTTCCTTSEEEEEEETHHHHHHHHHHHHTTTTTSEEEEEEEESCC
T ss_pred --HHhCcCCCceEEEEECHhHHHHHHHHHHHhhCccccceEEEecCC
Confidence 322232224999999999999999 788899999999987653
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.37 E-value=8.4e-05 Score=78.14 Aligned_cols=221 Identities=10% Similarity=0.043 Sum_probs=133.8
Q ss_pred ceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCC----ceeecccCC
Q 005240 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETG----EAKPLFESP 81 (706)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g----~~~~lt~~~ 81 (706)
.|...+++. ...+.+. +.......+.|++.+.+|+++. .....|+.+++++. ....+....
T Consensus 93 ~I~~i~l~~----~~~~~~~--~~~~~~~~l~~d~~~~~lywsD---------~~~~~I~~~~~~g~~~~~~~~~~~~~~ 157 (400)
T 3p5b_L 93 EVRKMTLDR----SEYTSLI--PNLRNVVALDTEVASNRIYWSD---------LSQRMICSTQLDRAHGVSSYDTVISRD 157 (400)
T ss_dssp EEEEECTTS----CSCEEEE--CSCSCEEEEEEETTTTEEEEEE---------TTTTEEEEEEC------CCCEEEECSS
T ss_pred eeEEEccCC----cceeEec--cccCcceEEeeeeccCceEEEe---------cCCCeEEEEEcccCCCCCcceEEEeCC
Confidence 444444543 4444443 2334567889999999998864 23468999998762 333332211
Q ss_pred CccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEE
Q 005240 82 DICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (706)
Q Consensus 82 ~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~ 161 (706)
. . ....++..+.++.||+.-. ....|.+
T Consensus 158 ~---~-~p~glavD~~~~~lY~~d~------------------------------------------------~~~~I~~ 185 (400)
T 3p5b_L 158 I---Q-APDGLAVDWIHSNIYWTDS------------------------------------------------VLGTVSV 185 (400)
T ss_dssp C---S-CEEEEEEETTTTEEEEEET------------------------------------------------TTTEEEE
T ss_pred C---C-CcccEEEEecCCceEEEEC------------------------------------------------CCCeEEE
Confidence 1 1 1456777776777777621 1257899
Q ss_pred EccCC-CceecCC-C-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccC
Q 005240 162 GSLDG-TAKDFGT-P-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYN 238 (706)
Q Consensus 162 ~~l~g-~~~~lt~-~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~ 238 (706)
++++| ..+.+.. . .....+++.|.+.+|+++.... ...|++++++|...+.+.....
T Consensus 186 ~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~-----------~~~I~~~~~dG~~~~~~~~~~l--------- 245 (400)
T 3p5b_L 186 ADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT-----------PAKIKKGGLNGVDIYSLVTENI--------- 245 (400)
T ss_dssp ECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSS-----------SCCEEEEETTSCSCEEEECSSC---------
T ss_pred EeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCC-----------CCEEEEEeCCCCccEEEEECCC---------
Confidence 99988 3343332 3 5678899999988998876432 2479999999887766644321
Q ss_pred ccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeeccccccc-ceecCCCceEEEEe
Q 005240 239 SVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRS-VSWCDDSLALVNET 317 (706)
Q Consensus 239 ~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~-~~wspDg~~l~~~~ 317 (706)
..+..++++++++. |||+... ...|+++|. +++..+.+......... ...+-++..|+++.
T Consensus 246 ---~~P~glavd~~~~~-lY~aD~~-----------~~~I~~~d~---dG~~~~~~~~~~~~l~~P~gl~v~~~~lywtd 307 (400)
T 3p5b_L 246 ---QWPNGITLDLLSGR-LYWVDSK-----------LHSISSIDV---NGGNRKTILEDEKRLAHPFSLAVFEDKVFWTD 307 (400)
T ss_dssp ---SCEEEEEEETTTTE-EEEEETT-----------TTEEEEEET---TSCCCEEEEECSSTTSSEEEEEEETTEEEEEE
T ss_pred ---CceEEEEEEeCCCE-EEEEECC-----------CCEEEEEeC---CCCccEEEEeCCCCCCCCEEEEEeCCEEEEec
Confidence 12347899998887 8887321 235888888 66666666543222221 12333555677654
Q ss_pred eccccceEEEEEcCCCC
Q 005240 318 WYKTSQTRTWLVCPGSK 334 (706)
Q Consensus 318 ~~~~~~~~l~~~d~~~~ 334 (706)
+ ...+|+++|..++
T Consensus 308 ~---~~~~V~~~~~~~G 321 (400)
T 3p5b_L 308 I---INEAIFSANRLTG 321 (400)
T ss_dssp S---SSCSEEEEESSSC
T ss_pred C---CCCeEEEEEcCCC
Confidence 2 3345888886554
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=98.35 E-value=5.8e-05 Score=79.69 Aligned_cols=197 Identities=9% Similarity=-0.007 Sum_probs=106.8
Q ss_pred ceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCce-eecccCCCcc
Q 005240 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-KPLFESPDIC 84 (706)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~-~~lt~~~~~~ 84 (706)
.|.+.+++. ++.+.+... ..... ++|+|||+.|+.+.. .+...||+++.+++.. +.+.......
T Consensus 153 ~I~~id~~~----g~~~~~~~~--~~~~~-ia~~~~g~~l~~~d~--------~~~~~I~~~d~~~~~~~~~~g~~~~~~ 217 (409)
T 3hrp_A 153 RVRLISVDD----NKVTTVHPG--FKGGK-PAVTKDKQRVYSIGW--------EGTHTVYVYMKASGWAPTRIGQLGSTF 217 (409)
T ss_dssp EEEEEETTT----TEEEEEEET--CCBCB-CEECTTSSEEEEEBS--------STTCEEEEEEGGGTTCEEEEEECCTTS
T ss_pred cEEEEECCC----CEEEEeecc--CCCCc-eeEecCCCcEEEEec--------CCCceEEEEEcCCCceeEEeeeccchh
Confidence 345555544 655555422 22234 999999998866532 2334899999887654 3331100000
Q ss_pred ccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc
Q 005240 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (706)
Q Consensus 85 ~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l 164 (706)
...+..++++|++..|++. . ....|+++++
T Consensus 218 -~~~p~~iav~p~~g~lyv~-d------------------------------------------------~~~~I~~~d~ 247 (409)
T 3hrp_A 218 -SGKIGAVALDETEEWLYFV-D------------------------------------------------SNKNFGRFNV 247 (409)
T ss_dssp -CSCCCBCEECTTSSEEEEE-C------------------------------------------------TTCEEEEEET
T ss_pred -cCCcEEEEEeCCCCeEEEE-E------------------------------------------------CCCcEEEEEC
Confidence 0125678999965567764 2 1157888888
Q ss_pred CC-Cceec----CCC--ceE-e-eeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCC-
Q 005240 165 DG-TAKDF----GTP--AVY-T-AVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIP- 234 (706)
Q Consensus 165 ~g-~~~~l----t~~--~~~-~-~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p- 234 (706)
++ ....+ ..+ ... . .++|+|++..|+++... ...|++++.++. ...+..........
T Consensus 248 ~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~------------~~~I~~~~~~g~-~~~~~g~~~~~g~~d 314 (409)
T 3hrp_A 248 KTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQN------------LSSVYKITPDGE-CEWFCGSATQKTVQD 314 (409)
T ss_dssp TTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETT------------TTEEEEECTTCC-EEEEEECTTCCSCBC
T ss_pred CCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCC------------CCEEEEEecCCC-EEEEEeCCCCCCcCC
Confidence 54 44333 222 111 2 89999988888776543 247999998876 33332221000000
Q ss_pred -cccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEe
Q 005240 235 -VCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH 295 (706)
Q Consensus 235 -~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~ 295 (706)
......-..+..++++|||+ ||+. +.. . ...|++++. .++....+.
T Consensus 315 g~~~~~~~~~P~gia~d~dG~--lyva-d~~-~--------~~~I~~~~~---~~G~v~~~~ 361 (409)
T 3hrp_A 315 GLREEALFAQPNGMTVDEDGN--FYIV-DGF-K--------GYCLRKLDI---LDGYVSTVA 361 (409)
T ss_dssp EEGGGCBCSSEEEEEECTTCC--EEEE-ETT-T--------TCEEEEEET---TTTEEEEEE
T ss_pred CcccccEeCCCeEEEEeCCCC--EEEE-eCC-C--------CCEEEEEEC---CCCEEEEEe
Confidence 00000001245789999987 6655 220 1 124777775 445555544
|
| >3l80_A Putative uncharacterized protein SMU.1393C; alpha/beta hydrolase fold, carboxylesterase, Ser- hydrolase; 2.00A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.33 E-value=8.9e-07 Score=88.77 Aligned_cols=74 Identities=14% Similarity=0.102 Sum_probs=55.2
Q ss_pred HCCeEEEEcCCCCcCCCCCCC-Cc--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeE
Q 005240 553 ARRFAVLAGPSIPIIGEGDKL-PN--DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCC 629 (706)
Q Consensus 553 ~~G~~v~~~~~~~~~g~g~~~-~~--~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a 629 (706)
+.||.|+..+.+ |+|.+. .. ........+|+.++++.+ ..+++.++|||+||.+++.++.++|+++++
T Consensus 67 ~~~~~vi~~D~~---G~G~S~~~~~~~~~~~~~~~~l~~~l~~~------~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~ 137 (292)
T 3l80_A 67 PDSIGILTIDAP---NSGYSPVSNQANVGLRDWVNAILMIFEHF------KFQSYLLCVHSIGGFAALQIMNQSSKACLG 137 (292)
T ss_dssp CTTSEEEEECCT---TSTTSCCCCCTTCCHHHHHHHHHHHHHHS------CCSEEEEEEETTHHHHHHHHHHHCSSEEEE
T ss_pred hhcCeEEEEcCC---CCCCCCCCCcccccHHHHHHHHHHHHHHh------CCCCeEEEEEchhHHHHHHHHHhCchheee
Confidence 379999996665 455554 21 223555666666655544 335899999999999999999999999999
Q ss_pred EEeccC
Q 005240 630 GIARSG 635 (706)
Q Consensus 630 ~v~~~~ 635 (706)
+|..+|
T Consensus 138 lvl~~~ 143 (292)
T 3l80_A 138 FIGLEP 143 (292)
T ss_dssp EEEESC
T ss_pred EEEECC
Confidence 999983
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.33 E-value=3.5e-05 Score=83.00 Aligned_cols=208 Identities=11% Similarity=0.000 Sum_probs=112.9
Q ss_pred ccceeeCC-----CCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEE-e-cCCcEEEEEe
Q 005240 33 INFVSWSP-----DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVW-V-NNSTLLIFTI 105 (706)
Q Consensus 33 ~~~~~~SP-----DG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~w-S-pDg~~l~~~~ 105 (706)
...|..|. ||++| |+.+ .....|-++|+++.+..++...+.. .....+.+ + ||++++++..
T Consensus 87 ~hh~~~s~t~g~~DG~~l-fVnd--------~~~~rVavIdl~t~~~~~ii~ip~g---~~phg~~~~~~p~~~~v~~~~ 154 (595)
T 1fwx_A 87 LHHVHMSFTEGKYDGRFL-FMND--------KANTRVARVRCDVMKCDAILEIPNA---KGIHGLRPQKWPRSNYVFCNG 154 (595)
T ss_dssp BCCEEEEEETTEEEEEEE-EEEE--------TTTTEEEEEETTTTEEEEEEECSSC---CSEEEEEECCSSBCSEEEEEE
T ss_pred CCccccCCCCCCcCCCEE-EEEc--------CCCCEEEEEECCCceEeeEEeCCCC---CCCcceeeeecCCCcEEEEec
Confidence 45588898 99988 5443 4567899999999987776543321 12456676 5 9999987764
Q ss_pred cCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCC-C-ceecCCCceEeeeeeC
Q 005240 106 PSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-T-AKDFGTPAVYTAVEPS 183 (706)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g-~-~~~lt~~~~~~~~~~S 183 (706)
.. .... -+.|..+. . . -...+.+-++|.+. + ..++.-++....++.|
T Consensus 155 ~~-~~p~-----~~dg~~l~---------~----------~------~~~~~~vtvID~~t~~v~~qI~Vgg~pd~~~~s 203 (595)
T 1fwx_A 155 ED-ETPL-----VNDGTNME---------D----------V------ANYVNVFTAVDADKWEVAWQVLVSGNLDNCDAD 203 (595)
T ss_dssp CS-CEES-----SCSSSSTT---------C----------G------GGEEEEEEEEETTTTEEEEEEEESSCCCCEEEC
T ss_pred cc-cccc-----CCCCcccc---------c----------c------cccCceEEEEECCCCeEEEEEEeCCCccceEEC
Confidence 21 1000 00010000 0 0 00225677788843 2 2333333355678899
Q ss_pred CCCcEEEEEeeccCcc-cc-cccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEE
Q 005240 184 PDQKYVLITSMHRPYS-YK-VPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVE 261 (706)
Q Consensus 184 pDG~~i~~~~~~~~~~-~~-~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~ 261 (706)
|||++++.++.....- .. .........+.+.+.. +.....++|+. ++ +
T Consensus 204 pdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~---------------------------~~~~~v~~Gk~-~~-i- 253 (595)
T 1fwx_A 204 YEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIA---------------------------EIEKAIAAGDY-QE-L- 253 (595)
T ss_dssp SSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHH---------------------------HHHHHHHHTCS-EE-E-
T ss_pred CCCCEEEEEecCcccCcchhhccccccceEEEeecc---------------------------ceeEeccCCCe-eE-E-
Confidence 9999998887654210 00 0000001233333321 11234566665 33 1
Q ss_pred eccCCCCccccCccceeeeecCCCCCC--CCc-eEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCC
Q 005240 262 AQDRGDANVEVSPRDIIYTQPAEPAEG--EKP-EILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (706)
Q Consensus 262 ~~~~~~~~~~~~~~~~l~~~d~~~~~~--~~~-~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~ 333 (706)
+.+-++|. .. ++. ..........-.+.+||||++++... . ...++.++|.++
T Consensus 254 --------------~~V~VID~---~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~-~--~s~~VsVid~~~ 308 (595)
T 1fwx_A 254 --------------NGVKVVDG---RKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAG-K--LSPTVTVLDVTR 308 (595)
T ss_dssp --------------TTEEEEEC---SGGGCCSSEEEEEEESSCCCEEECTTSSEEEEEC-T--TSSBEEEEEGGG
T ss_pred --------------CcEEEEeC---cccCCceeEEEEecCCCceEEEEcCCCCEEEEeC-C--CCCeEEEEECcc
Confidence 12556676 33 222 22222344566789999999988754 2 334577888775
|
| >1bu8_A Protein (pancreatic lipase related protein 2); hydrolase, lipid degradation; HET: NAG; 1.80A {Rattus norvegicus} SCOP: b.12.1.2 c.69.1.19 PDB: 2oxe_A* 2pvs_A 1eth_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=1.1e-06 Score=93.52 Aligned_cols=109 Identities=9% Similarity=-0.091 Sum_probs=75.5
Q ss_pred ceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHH-CCeEEEEcCCCCcCCCCCCCCc--hhhHHHHHHHHHHH
Q 005240 513 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA-RRFAVLAGPSIPIIGEGDKLPN--DRFVEQLVSSAEAA 589 (706)
Q Consensus 513 ~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~G~~v~~~~~~~~~g~g~~~~~--~~~~~~~~~D~~~~ 589 (706)
.|+||++||.+.. ....+.......|++ .||.|+..+.+ |+|.+... ........+|+.+.
T Consensus 70 ~p~vvliHG~~~~-------------~~~~w~~~l~~~l~~~~~~~Vi~~D~~---G~G~S~~~~~~~~~~~~~~dl~~l 133 (452)
T 1bu8_A 70 RKTRFIVHGFIDK-------------GEDGWLLDMCKKMFQVEKVNCICVDWR---RGSRTEYTQASYNTRVVGAEIAFL 133 (452)
T ss_dssp SEEEEEECCSCCT-------------TCTTHHHHHHHHHHTTCCEEEEEEECH---HHHSSCHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCC-------------CCchHHHHHHHHHHhhCCCEEEEEech---hcccCchhHhHhhHHHHHHHHHHH
Confidence 4889999996421 000011112345555 49999986654 44544321 11234567888999
Q ss_pred HHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCC
Q 005240 590 VEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSY 637 (706)
Q Consensus 590 ~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~ 637 (706)
+++|.++.-++.+++.|+|||+||++|+.++.+.|++++.++...|..
T Consensus 134 i~~L~~~~g~~~~~i~LvGhSlGg~vA~~~a~~~p~~v~~iv~ldpa~ 181 (452)
T 1bu8_A 134 VQVLSTEMGYSPENVHLIGHSLGAHVVGEAGRRLEGHVGRITGLDPAE 181 (452)
T ss_dssp HHHHHHHHCCCGGGEEEEEETHHHHHHHHHHHHTTTCSSEEEEESCBC
T ss_pred HHHHHHhcCCCccceEEEEEChhHHHHHHHHHhcccccceEEEecCCc
Confidence 999976534567899999999999999999999999999999987653
|
| >3qmv_A Thioesterase, REDJ; alpha/beta hydrolase fold, hydrolase; 2.12A {Streptomyces coelicolor} PDB: 3qmw_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=4.2e-07 Score=90.81 Aligned_cols=130 Identities=18% Similarity=0.065 Sum_probs=66.9
Q ss_pred CceEEEEEEccCCeE-EEEEEEecCCCCCCC-----CCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHH
Q 005240 480 LQKEMIKYQRKDGVP-LTATLYLPPGYDQSK-----DGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA 553 (706)
Q Consensus 480 ~~~~~~~~~~~dg~~-i~~~l~~P~~~~~~~-----~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 553 (706)
+..|.+.|++.++.. ...|+..+.. .+.. ....|.||++||.+.. ...+ ..++..|++
T Consensus 13 ~~~~~~~f~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lvllHG~~~~-----------~~~~----~~l~~~L~~ 76 (280)
T 3qmv_A 13 LGTENLYFQSNALLSQRSAWFPRPVA-APAAEPPDPAAAPLRLVCFPYAGGT-----------VSAF----RGWQERLGD 76 (280)
T ss_dssp ---------------CHHHHSCCCCC-CCCCCCCCTTTCSEEEEEECCTTCC-----------GGGG----TTHHHHHCT
T ss_pred cCcceeeeecchhhhhcchheecCCC-CCcccccccCCCCceEEEECCCCCC-----------hHHH----HHHHHhcCC
Confidence 356677787766532 2233333221 1111 0012789999996421 1112 134555655
Q ss_pred CCeEEEEcCCCCcCCCCCCCC--chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCcee---
Q 005240 554 RRFAVLAGPSIPIIGEGDKLP--NDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFC--- 628 (706)
Q Consensus 554 ~G~~v~~~~~~~~~g~g~~~~--~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~--- 628 (706)
||.|+..+.+ |+|.+.. ........++|+.+.++.+. ...++.++||||||.+++.++.+.|++++
T Consensus 77 -~~~v~~~D~~---G~G~S~~~~~~~~~~~~a~~~~~~l~~~~-----~~~~~~lvG~S~Gg~va~~~a~~~p~~~~~~~ 147 (280)
T 3qmv_A 77 -EVAVVPVQLP---GRGLRLRERPYDTMEPLAEAVADALEEHR-----LTHDYALFGHSMGALLAYEVACVLRRRGAPRP 147 (280)
T ss_dssp -TEEEEECCCT---TSGGGTTSCCCCSHHHHHHHHHHHHHHTT-----CSSSEEEEEETHHHHHHHHHHHHHHHTTCCCC
T ss_pred -CceEEEEeCC---CCCCCCCCCCCCCHHHHHHHHHHHHHHhC-----CCCCEEEEEeCHhHHHHHHHHHHHHHcCCCCc
Confidence 9999996665 4444322 22234556666666555432 34689999999999999999999877665
Q ss_pred -EEEecc
Q 005240 629 -CGIARS 634 (706)
Q Consensus 629 -a~v~~~ 634 (706)
.++..+
T Consensus 148 ~~l~l~~ 154 (280)
T 3qmv_A 148 RHLFVSG 154 (280)
T ss_dssp SCEEEES
T ss_pred eEEEEEC
Confidence 555543
|
| >1gpl_A RP2 lipase; serine esterase, hydrolase, lipid degradation, pancreas, glycoprotein, chimeric; 2.01A {Cavia porcellus} SCOP: b.12.1.2 c.69.1.19 PDB: 1lpb_B* 1lpa_B* 1n8s_A | Back alignment and structure |
|---|
Probab=98.31 E-value=8.5e-07 Score=94.18 Aligned_cols=109 Identities=10% Similarity=-0.002 Sum_probs=75.6
Q ss_pred ceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHH-CCeEEEEcCCCCcCCCCCCCCc--hhhHHHHHHHHHHH
Q 005240 513 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA-RRFAVLAGPSIPIIGEGDKLPN--DRFVEQLVSSAEAA 589 (706)
Q Consensus 513 ~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~G~~v~~~~~~~~~g~g~~~~~--~~~~~~~~~D~~~~ 589 (706)
.|+||++||.+.. +...+ ....+..|++ .||.|+..+.+ |+|.+... .........|+.++
T Consensus 70 ~~~vvllHG~~~s----------~~~~w---~~~~~~~l~~~~~~~Vi~~D~~---g~g~s~~~~~~~~~~~~~~dl~~~ 133 (432)
T 1gpl_A 70 RKTRFIIHGFTDS----------GENSW---LSDMCKNMFQVEKVNCICVDWK---GGSKAQYSQASQNIRVVGAEVAYL 133 (432)
T ss_dssp SEEEEEECCTTCC----------TTSHH---HHHHHHHHHHHCCEEEEEEECH---HHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCC----------CCchH---HHHHHHHHHhcCCcEEEEEECc---cccCccchhhHhhHHHHHHHHHHH
Confidence 4889999995311 00001 1113455665 79999986665 44444321 11234567889999
Q ss_pred HHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCC
Q 005240 590 VEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSY 637 (706)
Q Consensus 590 ~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~ 637 (706)
++++.++.-++.+++.++|||+||++|+.++.+.|++++.+++..|..
T Consensus 134 i~~l~~~~g~~~~~i~lvGhSlGg~vA~~~a~~~p~~v~~iv~l~pa~ 181 (432)
T 1gpl_A 134 VQVLSTSLNYAPENVHIIGHSLGAHTAGEAGKRLNGLVGRITGLDPAE 181 (432)
T ss_dssp HHHHHHHHCCCGGGEEEEEETHHHHHHHHHHHTTTTCSSEEEEESCBC
T ss_pred HHHHHHhcCCCcccEEEEEeCHHHHHHHHHHHhcccccceeEEecccc
Confidence 999986533567899999999999999999999999999988887653
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=98.31 E-value=2.1e-05 Score=83.79 Aligned_cols=118 Identities=8% Similarity=0.067 Sum_probs=68.9
Q ss_pred ceEeeeeeCCC-CcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCC
Q 005240 175 AVYTAVEPSPD-QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADK 253 (706)
Q Consensus 175 ~~~~~~~~SpD-G~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg 253 (706)
..+..++|+|+ ++.|+..+.+ ..|.+||+.++......... . ..+..++|+|||
T Consensus 150 ~~V~~v~~~p~~~~~las~s~D-------------g~v~iwD~~~~~~~~~~~~~-~-----------~~v~~v~wspdg 204 (434)
T 2oit_A 150 GMVIDMKWNPTVPSMVAVCLAD-------------GSIAVLQVTETVKVCATLPS-T-----------VAVTSVCWSPKG 204 (434)
T ss_dssp GSEEEEEECSSCTTEEEEEETT-------------SCEEEEEESSSEEEEEEECG-G-----------GCEEEEEECTTS
T ss_pred CceEEEEECCCCCCEEEEEECC-------------CeEEEEEcCCCcceeeccCC-C-----------CceeEEEEcCCC
Confidence 57889999998 5666544433 37999999866332111110 0 224578999999
Q ss_pred CceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeec-------ccccccceecCCCceEEEEeecc---ccc
Q 005240 254 PSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL-------DLRFRSVSWCDDSLALVNETWYK---TSQ 323 (706)
Q Consensus 254 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~-------~~~~~~~~wspDg~~l~~~~~~~---~~~ 323 (706)
+. |+... .+ +.|.+||. .+.....+... ...+..+.|++++..++...... ...
T Consensus 205 ~~-lasgs-~d-----------g~v~iwd~---~~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~ 268 (434)
T 2oit_A 205 KQ-LAVGK-QN-----------GTVVQYLP---TLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETS 268 (434)
T ss_dssp SC-EEEEE-TT-----------SCEEEECT---TCCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSC
T ss_pred CE-EEEEc-CC-----------CcEEEEcc---CCcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCC
Confidence 87 65332 11 24778887 42222233221 12677889999988776544332 122
Q ss_pred eEEEEEcCCC
Q 005240 324 TRTWLVCPGS 333 (706)
Q Consensus 324 ~~l~~~d~~~ 333 (706)
..+..+++..
T Consensus 269 ~~v~i~~l~~ 278 (434)
T 2oit_A 269 PDVVMALLPK 278 (434)
T ss_dssp CEEEEEECCC
T ss_pred CceEEEEecc
Confidence 3355666554
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=0.0012 Score=65.78 Aligned_cols=192 Identities=13% Similarity=0.089 Sum_probs=109.5
Q ss_pred CcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCC
Q 005240 31 AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (706)
Q Consensus 31 ~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~ 110 (706)
.....+.++|||+.. ++. .....|++++.+ ++...+..... ...+..+.+++||+. ++...
T Consensus 15 ~~~~~i~~d~~g~l~-v~~---------~~~~~v~~~d~~-~~~~~~~~~~~---~~~~~~i~~~~~g~l-~v~~~---- 75 (299)
T 2z2n_A 15 TGPYGITVSDKGKVW-ITQ---------HKANMISCINLD-GKITEYPLPTP---DAKVMCLTISSDGEV-WFTEN---- 75 (299)
T ss_dssp CCEEEEEECTTSCEE-EEE---------TTTTEEEEECTT-CCEEEEECSST---TCCEEEEEECTTSCE-EEEET----
T ss_pred CCccceEECCCCCEE-EEe---------cCCCcEEEEcCC-CCeEEecCCcc---cCceeeEEECCCCCE-EEeCC----
Confidence 357788999999743 332 234689999988 66555432111 112567888899984 44321
Q ss_pred CCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCCCceecCC---CceEeeeeeCCCCc
Q 005240 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGT---PAVYTAVEPSPDQK 187 (706)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g~~~~lt~---~~~~~~~~~SpDG~ 187 (706)
....|++++.+|+.+.+.. ...+..++++|||+
T Consensus 76 --------------------------------------------~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~ 111 (299)
T 2z2n_A 76 --------------------------------------------AANKIGRITKKGIIKEYTLPNPDSAPYGITEGPNGD 111 (299)
T ss_dssp --------------------------------------------TTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSC
T ss_pred --------------------------------------------CCCeEEEECCCCcEEEEeCCCcCCCceeeEECCCCC
Confidence 1156888887765444331 24677889999985
Q ss_pred EEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCC
Q 005240 188 YVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGD 267 (706)
Q Consensus 188 ~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~ 267 (706)
|++.... ...|++++.++. .+.+.... .. ..+..+.+.++|+ |++...
T Consensus 112 -l~v~~~~------------~~~i~~~d~~g~-~~~~~~~~-~~----------~~~~~i~~~~~g~--l~v~~~----- 159 (299)
T 2z2n_A 112 -IWFTEMN------------GNRIGRITDDGK-IREYELPN-KG----------SYPSFITLGSDNA--LWFTEN----- 159 (299)
T ss_dssp -EEEEETT------------TTEEEEECTTCC-EEEEECSS-TT----------CCEEEEEECTTSC--EEEEET-----
T ss_pred -EEEEecC------------CceEEEECCCCC-EEEecCCC-CC----------CCCceEEEcCCCC--EEEEeC-----
Confidence 5554432 137888988443 33332111 00 1234678888885 665421
Q ss_pred CccccCccceeeeecCCCCCCCCceEEe--ecccccccceecCCCceEEEEeeccccceEEEEEcC
Q 005240 268 ANVEVSPRDIIYTQPAEPAEGEKPEILH--KLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCP 331 (706)
Q Consensus 268 ~~~~~~~~~~l~~~d~~~~~~~~~~~l~--~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~ 331 (706)
....|+++|. +++...+. ........+.+.++|+ |++.. . ....|+++|.
T Consensus 160 ------~~~~i~~~~~----~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~-~--~~~~i~~~~~ 211 (299)
T 2z2n_A 160 ------QNNAIGRITE----SGDITEFKIPTPASGPVGITKGNDDA-LWFVE-I--IGNKIGRITT 211 (299)
T ss_dssp ------TTTEEEEECT----TCCEEEEECSSTTCCEEEEEECTTSS-EEEEE-T--TTTEEEEECT
T ss_pred ------CCCEEEEEcC----CCcEEEeeCCCCCCcceeEEECCCCC-EEEEc-c--CCceEEEECC
Confidence 1124777765 24444432 1223455678889987 44332 1 2346999998
|
| >2psd_A Renilla-luciferin 2-monooxygenase; alpha/beta-hydrolase, luciferase, oxidoreductase; 1.40A {Renilla reniformis} PDB: 2pse_A 2psj_A* 2psh_A 2psf_A | Back alignment and structure |
|---|
Probab=98.30 E-value=2.2e-06 Score=87.40 Aligned_cols=113 Identities=10% Similarity=-0.042 Sum_probs=70.5
Q ss_pred cCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCC
Q 005240 490 KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGE 569 (706)
Q Consensus 490 ~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~ 569 (706)
.+|..+.....-+ ++-|.||++||.+.. ...|. ..+..|++ .|.|++++-+ |+
T Consensus 28 ~~g~~l~y~~~G~--------g~~~~vvllHG~~~~-----------~~~w~----~~~~~L~~-~~~via~Dl~---Gh 80 (318)
T 2psd_A 28 VLDSFINYYDSEK--------HAENAVIFLHGNATS-----------SYLWR----HVVPHIEP-VARCIIPDLI---GM 80 (318)
T ss_dssp ETTEEEEEEECCS--------CTTSEEEEECCTTCC-----------GGGGT----TTGGGTTT-TSEEEEECCT---TS
T ss_pred eCCeEEEEEEcCC--------CCCCeEEEECCCCCc-----------HHHHH----HHHHHhhh-cCeEEEEeCC---CC
Confidence 3777776544311 123579999996421 11121 12233444 4678875554 56
Q ss_pred CCCCCc--h-hhHHHHHHHHHHHHHHHHHcCCCCC-CcEEEEEechHHHHHHHHHHhCCCceeEEEeccC
Q 005240 570 GDKLPN--D-RFVEQLVSSAEAAVEEVVRRGVADP-SRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSG 635 (706)
Q Consensus 570 g~~~~~--~-~~~~~~~~D~~~~~~~l~~~~~id~-~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~ 635 (706)
|.+... . ...+...+|+.+.++.+ +. +++.++||||||.+++.++.++|++++++|..++
T Consensus 81 G~S~~~~~~~~~~~~~a~dl~~ll~~l------~~~~~~~lvGhSmGg~ia~~~A~~~P~~v~~lvl~~~ 144 (318)
T 2psd_A 81 GKSGKSGNGSYRLLDHYKYLTAWFELL------NLPKKIIFVGHDWGAALAFHYAYEHQDRIKAIVHMES 144 (318)
T ss_dssp TTCCCCTTSCCSHHHHHHHHHHHHTTS------CCCSSEEEEEEEHHHHHHHHHHHHCTTSEEEEEEEEE
T ss_pred CCCCCCCCCccCHHHHHHHHHHHHHhc------CCCCCeEEEEEChhHHHHHHHHHhChHhhheEEEecc
Confidence 655432 1 12455555655544432 33 7899999999999999999999999999998653
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.30 E-value=7.2e-05 Score=75.90 Aligned_cols=198 Identities=14% Similarity=0.071 Sum_probs=126.1
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCcee--ecccCCCccccccccceEEecCCcEEEEEecCCC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAK--PLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSR 109 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~--~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~ 109 (706)
....+.|.+.+.+|+++. .....|+.++++++... .+..... ....+++.+.+..||+.-.
T Consensus 36 ~~~~ld~d~~~~~lyw~D---------~~~~~I~r~~~~g~~~~~~~~~~~l~-----~p~glavd~~~g~ly~~d~--- 98 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSD---------VSEEAIKRTEFNKTESVQNVVVSGLL-----SPDGLACDWLGEKLYWTDS--- 98 (318)
T ss_dssp EEEEEEEEGGGTEEEEEE---------TTTTEEEEEETTSSSCCCEEEEECCS-----CCCEEEEETTTTEEEEEET---
T ss_pred ccEEEEEEeCCCEEEEEE---------CCCCcEEEEEccCCCceEEEEcCCCC-----CccEEEEEcCCCeEEEEEC---
Confidence 455778999999997764 33468999999877432 1221111 1456788887777777621
Q ss_pred CCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCC-CceecC-CC-ceEeeeeeCCCC
Q 005240 110 RDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TAKDFG-TP-AVYTAVEPSPDQ 186 (706)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g-~~~~lt-~~-~~~~~~~~SpDG 186 (706)
....|.+++++| ..+.+. .. .....+++.|.+
T Consensus 99 ---------------------------------------------~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~ 133 (318)
T 3sov_A 99 ---------------------------------------------ETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSS 133 (318)
T ss_dssp ---------------------------------------------TTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGG
T ss_pred ---------------------------------------------CCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCC
Confidence 125788999988 344443 33 567889999998
Q ss_pred cEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCC
Q 005240 187 KYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRG 266 (706)
Q Consensus 187 ~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~ 266 (706)
.+|+++.... ...|++++++|...+.+..... ..+..++++|+++. |||+..
T Consensus 134 g~ly~td~~~-----------~~~I~r~~~dG~~~~~~~~~~l------------~~Pnglavd~~~~~-lY~aD~---- 185 (318)
T 3sov_A 134 GFMYWTDWGE-----------VPKIERAGMDGSSRFIIINSEI------------YWPNGLTLDYEEQK-LYWADA---- 185 (318)
T ss_dssp TEEEEEECSS-----------SCEEEEEETTSCSCEEEECSSC------------SCEEEEEEETTTTE-EEEEET----
T ss_pred CEEEEEecCC-----------CCEEEEEEcCCCCeEEEEECCC------------CCccEEEEeccCCE-EEEEEC----
Confidence 8998876432 2479999999877666543221 11347899998887 888732
Q ss_pred CCccccCccceeeeecCCCCCCCCceEEee-cccccccceecCCCceEEEEeeccccceEEEEEcCCCC
Q 005240 267 DANVEVSPRDIIYTQPAEPAEGEKPEILHK-LDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK 334 (706)
Q Consensus 267 ~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~-~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~ 334 (706)
....|++++. +++..+.+.. .......++. |+..|+++.. ....|++++..++
T Consensus 186 -------~~~~I~~~d~---dG~~~~~~~~~~~~~P~glav--~~~~lywtd~---~~~~V~~~~~~~G 239 (318)
T 3sov_A 186 -------KLNFIHKSNL---DGTNRQAVVKGSLPHPFALTL--FEDILYWTDW---STHSILACNKYTG 239 (318)
T ss_dssp -------TTTEEEEEET---TSCSCEEEECSCCSCEEEEEE--ETTEEEEEET---TTTEEEEEETTTC
T ss_pred -------CCCEEEEEcC---CCCceEEEecCCCCCceEEEE--eCCEEEEEec---CCCeEEEEECCCC
Confidence 1235888888 6666665543 2222333444 3446666532 3457999998664
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=98.29 E-value=3.9e-05 Score=81.82 Aligned_cols=147 Identities=14% Similarity=0.109 Sum_probs=87.7
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCC-----ce-ee---cccCCCccccccccceEEecC-CcEE
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETG-----EA-KP---LFESPDICLNAVFGSFVWVNN-STLL 101 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g-----~~-~~---lt~~~~~~~~~~~~~~~wSpD-g~~l 101 (706)
.+...+|||||++||..... +.....|.++|+.++ +. +. +....++ ...+..+.|+|+ +..|
T Consensus 94 ~v~~l~~spdg~~lav~~~s------gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h--~~~V~~v~~~p~~~~~l 165 (434)
T 2oit_A 94 PIHHLALSCDNLTLSACMMS------SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDA--GGMVIDMKWNPTVPSMV 165 (434)
T ss_dssp CEEEEEECTTSCEEEEEEEE------TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSG--GGSEEEEEECSSCTTEE
T ss_pred cccEEEEcCCCCEEEEEEec------cCCCceEEEEEccccccCCcCCcceeeeeeccCCC--CCceEEEEECCCCCCEE
Confidence 58889999999999863210 133467888887654 11 11 1111111 123778999998 6777
Q ss_pred EEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCCce-ecCCC-ceEe
Q 005240 102 IFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAK-DFGTP-AVYT 178 (706)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~~-~lt~~-~~~~ 178 (706)
+..+.+ +.|.++|+ ++... ..... ..+.
T Consensus 166 as~s~D-------------------------------------------------g~v~iwD~~~~~~~~~~~~~~~~v~ 196 (434)
T 2oit_A 166 AVCLAD-------------------------------------------------GSIAVLQVTETVKVCATLPSTVAVT 196 (434)
T ss_dssp EEEETT-------------------------------------------------SCEEEEEESSSEEEEEEECGGGCEE
T ss_pred EEEECC-------------------------------------------------CeEEEEEcCCCcceeeccCCCCcee
Confidence 765421 56777788 44221 22222 5788
Q ss_pred eeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCC-CCCcccCccCCCCcceeeecCCCc
Q 005240 179 AVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAE-DIPVCYNSVREGMRSISWRADKPS 255 (706)
Q Consensus 179 ~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~-~~p~~~~~~~~g~~~~~~spdg~~ 255 (706)
.++|||||++|+..+.. ..|.+|++.+...+.+....... ..+ ..+..+.|++++..
T Consensus 197 ~v~wspdg~~lasgs~d-------------g~v~iwd~~~~~~~~~~~~~~~~~~~~-------~~v~~v~w~~~~~~ 254 (434)
T 2oit_A 197 SVCWSPKGKQLAVGKQN-------------GTVVQYLPTLQEKKVIPCPPFYESDHP-------VRVLDVLWIGTYVF 254 (434)
T ss_dssp EEEECTTSSCEEEEETT-------------SCEEEECTTCCEEEEECCCTTCCTTSC-------EEEEEEEEEETTEE
T ss_pred EEEEcCCCCEEEEEcCC-------------CcEEEEccCCcccccccCCcccCCCCc-------eeEEEEEEecCceE
Confidence 99999999999876643 37999999855444443221110 000 12347899998765
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=98.29 E-value=0.00016 Score=71.99 Aligned_cols=201 Identities=12% Similarity=0.087 Sum_probs=112.6
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCC-ccccccccceEEe-cCCcEEEEEecCCC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD-ICLNAVFGSFVWV-NNSTLLIFTIPSSR 109 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~-~~~~~~~~~~~wS-pDg~~l~~~~~~~~ 109 (706)
....++++|||+ |+.+. .....|++++.++...+.+..... ......+..++++ ++|+ |++....
T Consensus 31 ~p~~v~~~~~g~-l~v~~---------~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~-l~v~~~~-- 97 (286)
T 1q7f_A 31 EPSGVAVNAQND-IIVAD---------TNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGD-IIVTERS-- 97 (286)
T ss_dssp CEEEEEECTTCC-EEEEE---------GGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTE-EEEEECG--
T ss_pred CCceEEECCCCC-EEEEE---------CCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCe-EEEEcCC--
Confidence 356788999997 43332 233578899988655444432110 0000114567784 6665 4443210
Q ss_pred CCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCCC-ceecCCC--ceEeeeeeCCCC
Q 005240 110 RDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGT-AKDFGTP--AVYTAVEPSPDQ 186 (706)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g~-~~~lt~~--~~~~~~~~SpDG 186 (706)
....|++++.+|+ .+.+... .....++++|||
T Consensus 98 ---------------------------------------------~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g 132 (286)
T 1q7f_A 98 ---------------------------------------------PTHQIQIYNQYGQFVRKFGATILQHPRGVTVDNKG 132 (286)
T ss_dssp ---------------------------------------------GGCEEEEECTTSCEEEEECTTTCSCEEEEEECTTS
T ss_pred ---------------------------------------------CCCEEEEECCCCcEEEEecCccCCCceEEEEeCCC
Confidence 1257888887774 3334322 467789999999
Q ss_pred cEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCC
Q 005240 187 KYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRG 266 (706)
Q Consensus 187 ~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~ 266 (706)
+ |+++... ...|++|+.++...+.+.... .. ..+..++++|||+ ||+.. ..
T Consensus 133 ~-l~v~~~~------------~~~i~~~~~~g~~~~~~~~~~-~~----------~~p~~i~~~~~g~--l~v~~-~~-- 183 (286)
T 1q7f_A 133 R-IIVVECK------------VMRVIIFDQNGNVLHKFGCSK-HL----------EFPNGVVVNDKQE--IFISD-NR-- 183 (286)
T ss_dssp C-EEEEETT------------TTEEEEECTTSCEEEEEECTT-TC----------SSEEEEEECSSSE--EEEEE-GG--
T ss_pred C-EEEEECC------------CCEEEEEcCCCCEEEEeCCCC-cc----------CCcEEEEECCCCC--EEEEE-CC--
Confidence 6 5555432 247999998877665553211 00 1244788999986 55442 21
Q ss_pred CCccccCccceeeeecCCCCCCCCceEEeec--ccccccceecCCCceEEEEeeccccceEEEEEcCCC
Q 005240 267 DANVEVSPRDIIYTQPAEPAEGEKPEILHKL--DLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (706)
Q Consensus 267 ~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~--~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~ 333 (706)
...|++++. ++.....+... ......+++++||..++... . ....|.+++.++
T Consensus 184 --------~~~i~~~~~---~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~--~-~~~~i~~~~~~g 238 (286)
T 1q7f_A 184 --------AHCVKVFNY---EGQYLRQIGGEGITNYPIGVGINSNGEILIADN--H-NNFNLTIFTQDG 238 (286)
T ss_dssp --------GTEEEEEET---TCCEEEEESCTTTSCSEEEEEECTTCCEEEEEC--S-SSCEEEEECTTS
T ss_pred --------CCEEEEEcC---CCCEEEEEccCCccCCCcEEEECCCCCEEEEeC--C-CCEEEEEECCCC
Confidence 124778876 44333333322 13456788999996444322 1 122688888765
|
| >1u2e_A 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase; alpha/beta hydrolase fold; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.29 E-value=2.8e-06 Score=85.15 Aligned_cols=79 Identities=14% Similarity=0.112 Sum_probs=55.9
Q ss_pred HHHHHCCeEEEEcCCCCcCCCCCCCCc---hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCC
Q 005240 549 LIFLARRFAVLAGPSIPIIGEGDKLPN---DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH 625 (706)
Q Consensus 549 ~~l~~~G~~v~~~~~~~~~g~g~~~~~---~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~ 625 (706)
..|+ .+|.|+..+.+ |+|.+... ....+...+|+.+.++.+ +.+++.++||||||.+++.++.++|+
T Consensus 61 ~~l~-~~~~vi~~D~~---G~G~S~~~~~~~~~~~~~~~~l~~~l~~l------~~~~~~lvGhS~GG~ia~~~a~~~p~ 130 (289)
T 1u2e_A 61 PLVE-AGYRVILLDCP---GWGKSDSVVNSGSRSDLNARILKSVVDQL------DIAKIHLLGNSMGGHSSVAFTLKWPE 130 (289)
T ss_dssp HHHH-TTCEEEEECCT---TSTTSCCCCCSSCHHHHHHHHHHHHHHHT------TCCCEEEEEETHHHHHHHHHHHHCGG
T ss_pred HHHh-cCCeEEEEcCC---CCCCCCCCCccccCHHHHHHHHHHHHHHh------CCCceEEEEECHhHHHHHHHHHHCHH
Confidence 3444 45999986665 45555332 223444555555554433 34689999999999999999999999
Q ss_pred ceeEEEeccCCC
Q 005240 626 LFCCGIARSGSY 637 (706)
Q Consensus 626 ~~~a~v~~~~~~ 637 (706)
+++++|+.++..
T Consensus 131 ~v~~lvl~~~~~ 142 (289)
T 1u2e_A 131 RVGKLVLMGGGT 142 (289)
T ss_dssp GEEEEEEESCSC
T ss_pred hhhEEEEECCCc
Confidence 999999987643
|
| >3ds8_A LIN2722 protein; unkonwn function, structural genomics, PSI, MCSG, P structure initiative; 1.80A {Listeria innocua} | Back alignment and structure |
|---|
Probab=98.29 E-value=6.1e-06 Score=81.03 Aligned_cols=60 Identities=15% Similarity=0.100 Sum_probs=50.0
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCC-----ceeEEEeccCCCCC
Q 005240 578 FVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH-----LFCCGIARSGSYNK 639 (706)
Q Consensus 578 ~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~-----~~~a~v~~~~~~d~ 639 (706)
......+|+..+++.+.++..+ .++.++||||||.+++.++.++|+ +++++|+.++.++.
T Consensus 72 ~~~~~a~~l~~~i~~l~~~~~~--~~~~lvGHS~Gg~ia~~~~~~~~~~~~~~~v~~lv~i~~p~~g 136 (254)
T 3ds8_A 72 TPDDWSKWLKIAMEDLKSRYGF--TQMDGVGHSNGGLALTYYAEDYAGDKTVPTLRKLVAIGSPFND 136 (254)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCC--SEEEEEEETHHHHHHHHHHHHSTTCTTSCEEEEEEEESCCTTC
T ss_pred CHHHHHHHHHHHHHHHHHHhCC--CceEEEEECccHHHHHHHHHHccCCccccceeeEEEEcCCcCc
Confidence 3466678888888888776323 689999999999999999999988 89999999987653
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=98.29 E-value=6.9e-05 Score=79.88 Aligned_cols=185 Identities=11% Similarity=0.066 Sum_probs=105.2
Q ss_pred eeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCC
Q 005240 36 VSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKK 115 (706)
Q Consensus 36 ~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~ 115 (706)
..+++||++|+.... ...|.++|+.+++.......... .+..+.| |++.|+..+.
T Consensus 137 ~~~~~d~~~l~~g~~----------dg~i~iwd~~~~~~~~~~~~h~~----~v~~l~~--~~~~l~sg~~--------- 191 (435)
T 1p22_A 137 YCLQYDDQKIVSGLR----------DNTIKIWDKNTLECKRILTGHTG----SVLCLQY--DERVIITGSS--------- 191 (435)
T ss_dssp EEEECCSSEEEEEES----------SSCEEEEESSSCCEEEEECCCSS----CEEEEEC--CSSEEEEEET---------
T ss_pred EEEEECCCEEEEEeC----------CCeEEEEeCCCCeEEEEEcCCCC----cEEEEEE--CCCEEEEEcC---------
Confidence 356779999988643 35677889888876655432221 2555555 8888776642
Q ss_pred CCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCC-ceecCCC-ceEeeeeeCCCCcEEEEE
Q 005240 116 TMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGTP-AVYTAVEPSPDQKYVLIT 192 (706)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~-~~~lt~~-~~~~~~~~SpDG~~i~~~ 192 (706)
.+.|.++++ +++ ...+... ..+..++|++ +.|+..
T Consensus 192 ----------------------------------------dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~ 229 (435)
T 1p22_A 192 ----------------------------------------DSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN--GMMVTC 229 (435)
T ss_dssp ----------------------------------------TSCEEEEESSSCCEEEEECCCCSCEEEEECCT--TEEEEE
T ss_pred ----------------------------------------CCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC--CEEEEe
Confidence 156778888 554 3344433 6778888874 355544
Q ss_pred eeccCcccccccccccceEEEEecCCCeeEEc-ccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccc
Q 005240 193 SMHRPYSYKVPCARFSQKVQVWTTDGKLVREL-CDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVE 271 (706)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l-~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~ 271 (706)
+.. ..|.+|++.++....+ ....+.. ..+..+.| +++. |+... .
T Consensus 230 s~d-------------g~i~vwd~~~~~~~~~~~~~~~~~----------~~v~~~~~--~~~~-l~s~~-~-------- 274 (435)
T 1p22_A 230 SKD-------------RSIAVWDMASPTDITLRRVLVGHR----------AAVNVVDF--DDKY-IVSAS-G-------- 274 (435)
T ss_dssp ETT-------------SCEEEEECSSSSCCEEEEEECCCS----------SCEEEEEE--ETTE-EEEEE-T--------
T ss_pred eCC-------------CcEEEEeCCCCCCceeeeEecCCC----------CcEEEEEe--CCCE-EEEEe-C--------
Confidence 432 3799999985542211 1111110 11224455 5654 44321 1
Q ss_pred cCccceeeeecCCCCCCCCce-EEeecccccccceecCCCceEEEEeeccccceEEEEEcCCCC
Q 005240 272 VSPRDIIYTQPAEPAEGEKPE-ILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK 334 (706)
Q Consensus 272 ~~~~~~l~~~d~~~~~~~~~~-~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~ 334 (706)
.+.|.++|+ .+++.. .+......+..+.| ++..|+..+. ...|.++|+.++
T Consensus 275 ---dg~i~vwd~---~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~----dg~i~iwd~~~~ 326 (435)
T 1p22_A 275 ---DRTIKVWNT---STCEFVRTLNGHKRGIACLQY--RDRLVVSGSS----DNTIRLWDIECG 326 (435)
T ss_dssp ---TSEEEEEET---TTCCEEEEEECCSSCEEEEEE--ETTEEEEEET----TSCEEEEETTTC
T ss_pred ---CCeEEEEEC---CcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeC----CCeEEEEECCCC
Confidence 125788888 444443 34445566666777 4566666542 224677777764
|
| >1ex9_A Lactonizing lipase; alpha-beta hydrolase fold, phosphonate inhibitor; HET: OCP; 2.54A {Pseudomonas aeruginosa} SCOP: c.69.1.18 | Back alignment and structure |
|---|
Probab=98.28 E-value=3.5e-06 Score=84.27 Aligned_cols=81 Identities=16% Similarity=0.095 Sum_probs=58.6
Q ss_pred hHHHHHHHCCeEEEEcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCC
Q 005240 546 TSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH 625 (706)
Q Consensus 546 ~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~ 625 (706)
.....|.++||.|+..+.+ |+|.. ....+...+|+..+++.+ +.++|.++||||||.++..++.+.|+
T Consensus 30 ~~~~~L~~~G~~v~~~d~~---g~g~s---~~~~~~~~~~i~~~~~~~------~~~~v~lvGhS~GG~~a~~~a~~~p~ 97 (285)
T 1ex9_A 30 GIPSALRRDGAQVYVTEVS---QLDTS---EVRGEQLLQQVEEIVALS------GQPKVNLIGHSHGGPTIRYVAAVRPD 97 (285)
T ss_dssp THHHHHHHTTCCEEEECCC---SSSCH---HHHHHHHHHHHHHHHHHH------CCSCEEEEEETTHHHHHHHHHHHCGG
T ss_pred HHHHHHHhCCCEEEEEeCC---CCCCc---hhhHHHHHHHHHHHHHHh------CCCCEEEEEECHhHHHHHHHHHhChh
Confidence 3567788999999986664 34432 122334444555544433 34689999999999999999999999
Q ss_pred ceeEEEeccCCCC
Q 005240 626 LFCCGIARSGSYN 638 (706)
Q Consensus 626 ~~~a~v~~~~~~d 638 (706)
+++++|..++...
T Consensus 98 ~v~~lv~i~~p~~ 110 (285)
T 1ex9_A 98 LIASATSVGAPHK 110 (285)
T ss_dssp GEEEEEEESCCTT
T ss_pred heeEEEEECCCCC
Confidence 9999999988543
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=3.1e-05 Score=75.57 Aligned_cols=207 Identities=8% Similarity=0.007 Sum_probs=120.9
Q ss_pred eecCCCCC--cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEE
Q 005240 24 VHGYPDGA--KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLL 101 (706)
Q Consensus 24 i~~~~~~~--~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l 101 (706)
+..+|.+. ....+.|+||| +| |.++. ..+...|.++|+++++..+-...+.. ........+|+.|
T Consensus 12 v~~~p~~~~~f~~Gl~~~~dg-~L-yvstg------~~~~s~v~~iD~~tg~v~~~i~l~~~-----~fgeGi~~~g~~l 78 (266)
T 2iwa_A 12 LNEFPHDPYAFTQGLVYAEND-TL-FESTG------LYGRSSVRQVALQTGKVENIHKMDDS-----YFGEGLTLLNEKL 78 (266)
T ss_dssp EEEEECCTTCCEEEEEECSTT-EE-EEEEC------STTTCEEEEEETTTCCEEEEEECCTT-----CCEEEEEEETTEE
T ss_pred EEEEECCCCCCcccEEEeCCC-eE-EEECC------CCCCCEEEEEECCCCCEEEEEecCCC-----cceEEEEEeCCEE
Confidence 44445553 34688999996 55 54431 13468999999999987654322221 1222344457777
Q ss_pred EEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CC-CceecCCCceEee
Q 005240 102 IFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTPAVYTA 179 (706)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g-~~~~lt~~~~~~~ 179 (706)
|.... ..+.++++|. ++ ....+..+ ....
T Consensus 79 yv~t~------------------------------------------------~~~~v~viD~~t~~v~~~i~~g-~~~g 109 (266)
T 2iwa_A 79 YQVVW------------------------------------------------LKNIGFIYDRRTLSNIKNFTHQ-MKDG 109 (266)
T ss_dssp EEEET------------------------------------------------TCSEEEEEETTTTEEEEEEECC-SSSC
T ss_pred EEEEe------------------------------------------------cCCEEEEEECCCCcEEEEEECC-CCCe
Confidence 77642 1268899998 45 33444332 1223
Q ss_pred eeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCe-eEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEE
Q 005240 180 VEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL-VRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLY 258 (706)
Q Consensus 180 ~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~ 258 (706)
..+++||++|+.+. . ...|.++|..+.+ .+.+.-... ..|. .....+.|. || . ||
T Consensus 110 ~glt~Dg~~l~vs~-g------------s~~l~viD~~t~~v~~~I~Vg~~--~~p~------~~~nele~~-dg-~-ly 165 (266)
T 2iwa_A 110 WGLATDGKILYGSD-G------------TSILYEIDPHTFKLIKKHNVKYN--GHRV------IRLNELEYI-NG-E-VW 165 (266)
T ss_dssp CEEEECSSSEEEEC-S------------SSEEEEECTTTCCEEEEEECEET--TEEC------CCEEEEEEE-TT-E-EE
T ss_pred EEEEECCCEEEEEC-C------------CCeEEEEECCCCcEEEEEEECCC--Cccc------ccceeEEEE-CC-E-EE
Confidence 45788999997653 3 2489999998754 344432211 0110 012245666 65 3 55
Q ss_pred EEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecc--------------cccccceecCCCceEEEEeeccccce
Q 005240 259 WVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLD--------------LRFRSVSWCDDSLALVNETWYKTSQT 324 (706)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~--------------~~~~~~~wspDg~~l~~~~~~~~~~~ 324 (706)
+.. +..+.|.++|. +++++....... .....++|+||+++++.+. ..+.
T Consensus 166 -vn~----------~~~~~V~vID~---~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTg---k~~~ 228 (266)
T 2iwa_A 166 -ANI----------WQTDCIARISA---KDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTG---KLWP 228 (266)
T ss_dssp -EEE----------TTSSEEEEEET---TTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEE---TTCS
T ss_pred -Eec----------CCCCeEEEEEC---CCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEEC---CCCC
Confidence 322 12346889998 677765433221 2346789999999888754 2566
Q ss_pred EEEEEcCCC
Q 005240 325 RTWLVCPGS 333 (706)
Q Consensus 325 ~l~~~d~~~ 333 (706)
+|+.+++..
T Consensus 229 ~v~~i~l~~ 237 (266)
T 2iwa_A 229 KLFEIKLHL 237 (266)
T ss_dssp EEEEEEEEE
T ss_pred eEEEEEEec
Confidence 799998765
|
| >3icv_A Lipase B, CALB; circular permutation, cleavage on PAIR of basic residues, glycoprotein, hydrolase, lipid degradation, zymogen, disulf; HET: NAG BTB; 1.49A {Candida antarctica} PDB: 3icw_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=4.7e-06 Score=83.20 Aligned_cols=83 Identities=8% Similarity=-0.119 Sum_probs=61.2
Q ss_pred HHHHHHHCCeEEEEcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhC---
Q 005240 547 SSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHA--- 623 (706)
Q Consensus 547 ~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~--- 623 (706)
+...|.++||.|+..+.. |+|... .....+++...++++.+.. ..+++.|+||||||.++.+++.+.
T Consensus 86 l~~~L~~~Gy~V~a~Dlp---G~G~~~-----~~~~~~~la~~I~~l~~~~--g~~~v~LVGHSmGGlvA~~al~~~p~~ 155 (316)
T 3icv_A 86 WIPLSAQLGYTPCWISPP---PFMLND-----TQVNTEYMVNAITTLYAGS--GNNKLPVLTWSQGGLVAQWGLTFFPSI 155 (316)
T ss_dssp HHHHHHHTTCEEEEECCT---TTTCSC-----HHHHHHHHHHHHHHHHHHT--TSCCEEEEEETHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHCCCeEEEecCC---CCCCCc-----HHHHHHHHHHHHHHHHHHh--CCCceEEEEECHHHHHHHHHHHhcccc
Confidence 567788899999886654 344321 2334566777777777652 236899999999999998888775
Q ss_pred CCceeEEEeccCCCCC
Q 005240 624 PHLFCCGIARSGSYNK 639 (706)
Q Consensus 624 p~~~~a~v~~~~~~d~ 639 (706)
+++++.+|+.++.+..
T Consensus 156 ~~~V~~lV~lapp~~G 171 (316)
T 3icv_A 156 RSKVDRLMAFAPDYKG 171 (316)
T ss_dssp TTTEEEEEEESCCTTC
T ss_pred chhhceEEEECCCCCC
Confidence 5899999999987653
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=0.00022 Score=79.28 Aligned_cols=181 Identities=10% Similarity=0.024 Sum_probs=122.4
Q ss_pred eeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhc
Q 005240 62 LRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNL 141 (706)
Q Consensus 62 ~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (706)
.+|..+++++.....+..... +. ....++|++++..||++-.
T Consensus 15 ~~I~~i~l~~~~~~~~~~~~~--~~-~~~~l~~d~~~~~lywtD~----------------------------------- 56 (628)
T 4a0p_A 15 ADIRRISLETNNNNVAIPLTG--VK-EASALDFDVTDNRIYWTDI----------------------------------- 56 (628)
T ss_dssp TEEEEEESSCTTCEEECCCCS--CS-CEEEEEEETTTTEEEEEET-----------------------------------
T ss_pred CcEEEEECCCCCcceEEEcCC--CC-ceEEEEEECCCCEEEEEEC-----------------------------------
Confidence 689999998765443321111 11 1457889998888887621
Q ss_pred cCCchhhhhhhhcccceEEEEccCC-CceecC-CC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCC
Q 005240 142 LKDEYDESLFDYYTTAQLVLGSLDG-TAKDFG-TP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG 218 (706)
Q Consensus 142 ~~~~~d~~~~~~~~~~~l~~~~l~g-~~~~lt-~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 218 (706)
....|++++++| ..+.+. .+ .....+++.+.++.|+++... ...|.+.+++|
T Consensus 57 -------------~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~------------~~~I~v~~~dG 111 (628)
T 4a0p_A 57 -------------SLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTG------------TNRIEVSKLDG 111 (628)
T ss_dssp -------------TTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETT------------TTEEEEEETTS
T ss_pred -------------CCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECC------------CCEEEEEecCC
Confidence 126889999977 444433 33 456788888889999887543 25899999998
Q ss_pred CeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecc
Q 005240 219 KLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLD 298 (706)
Q Consensus 219 ~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~ 298 (706)
+..+.|..... ..++.++..|.... |||... +. ...|++++. ++...+.+...-
T Consensus 112 ~~~~~l~~~~l------------~~P~~iavdp~~G~-lY~tD~---g~-------~~~I~r~~~---dG~~~~~l~~~~ 165 (628)
T 4a0p_A 112 QHRQVLVWKDL------------DSPRALALDPAEGF-MYWTEW---GG-------KPKIDRAAM---DGSERTTLVPNV 165 (628)
T ss_dssp TTCEEEECSSC------------CCEEEEEEETTTTE-EEEEEC---SS-------SCEEEEEET---TSCSCEEEECSC
T ss_pred CcEEEEEeCCC------------CCcccEEEccCCCe-EEEeCC---CC-------CCEEEEEeC---CCCceEEEECCC
Confidence 87666653322 22457889987665 887631 11 235888888 677777776544
Q ss_pred cccccceecCCCceEEEEeeccccceEEEEEcCCCC
Q 005240 299 LRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK 334 (706)
Q Consensus 299 ~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~ 334 (706)
.....+++.++++.|+++.. ....|+++|+++.
T Consensus 166 ~~P~GlalD~~~~~LY~aD~---~~~~I~~~d~dG~ 198 (628)
T 4a0p_A 166 GRANGLTIDYAKRRLYWTDL---DTNLIESSNMLGL 198 (628)
T ss_dssp SSEEEEEEETTTTEEEEEET---TTTEEEEEETTSC
T ss_pred CCcceEEEccccCEEEEEEC---CCCEEEEEcCCCC
Confidence 55667889999988988642 3457999999884
|
| >3qyj_A ALR0039 protein; alpha/beta fold, hydrolase; 1.78A {Nostoc SP} | Back alignment and structure |
|---|
Probab=98.25 E-value=5.2e-06 Score=83.42 Aligned_cols=111 Identities=14% Similarity=0.058 Sum_probs=72.0
Q ss_pred cCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCC
Q 005240 490 KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGE 569 (706)
Q Consensus 490 ~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~ 569 (706)
.+|..++.... +. -|.||++||.+.. ...|. .....| +.+|.|+.++.+ |+
T Consensus 12 ~~~~~~~~~~~-------g~---g~~~vllHG~~~~-----------~~~w~----~~~~~l-~~~~~vi~~Dl~---G~ 62 (291)
T 3qyj_A 12 TTEARINLVKA-------GH---GAPLLLLHGYPQT-----------HVMWH----KIAPLL-ANNFTVVATDLR---GY 62 (291)
T ss_dssp CSSCEEEEEEE-------CC---SSEEEEECCTTCC-----------GGGGT----TTHHHH-TTTSEEEEECCT---TS
T ss_pred cCCeEEEEEEc-------CC---CCeEEEECCCCCC-----------HHHHH----HHHHHH-hCCCEEEEEcCC---CC
Confidence 36777776543 11 2458889997521 11221 123334 568999986655 55
Q ss_pred CCCCCch-------hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccC
Q 005240 570 GDKLPND-------RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSG 635 (706)
Q Consensus 570 g~~~~~~-------~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~ 635 (706)
|.+.... .......+|+.+.++.+ ...++.++||||||.+++.++.++|+++++++..++
T Consensus 63 G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l------~~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~ 129 (291)
T 3qyj_A 63 GDSSRPASVPHHINYSKRVMAQDQVEVMSKL------GYEQFYVVGHDRGARVAHRLALDHPHRVKKLALLDI 129 (291)
T ss_dssp TTSCCCCCCGGGGGGSHHHHHHHHHHHHHHT------TCSSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESC
T ss_pred CCCCCCCCCccccccCHHHHHHHHHHHHHHc------CCCCEEEEEEChHHHHHHHHHHhCchhccEEEEECC
Confidence 5553321 23445566666655443 235799999999999999999999999999998763
|
| >1m33_A BIOH protein; alpha-betta-alpha sandwich, structural genomics, PSI, protei structure initiative; HET: MSE 3OH; 1.70A {Escherichia coli} SCOP: c.69.1.26 | Back alignment and structure |
|---|
Probab=98.24 E-value=3e-06 Score=83.29 Aligned_cols=75 Identities=15% Similarity=0.128 Sum_probs=51.7
Q ss_pred HHHHHHCCeEEEEcCCCCcCCCCCCCCchh-hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCc
Q 005240 548 SLIFLARRFAVLAGPSIPIIGEGDKLPNDR-FVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHL 626 (706)
Q Consensus 548 ~~~l~~~G~~v~~~~~~~~~g~g~~~~~~~-~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~ 626 (706)
...| +.+|.|+..+.+ |+|.+..... ..+. .++.+.+ .++ +++.++||||||.+++.++.++|++
T Consensus 33 ~~~L-~~~~~vi~~Dl~---G~G~S~~~~~~~~~~-------~~~~l~~--~l~-~~~~lvGhS~Gg~va~~~a~~~p~~ 98 (258)
T 1m33_A 33 DEEL-SSHFTLHLVDLP---GFGRSRGFGALSLAD-------MAEAVLQ--QAP-DKAIWLGWSLGGLVASQIALTHPER 98 (258)
T ss_dssp HHHH-HTTSEEEEECCT---TSTTCCSCCCCCHHH-------HHHHHHT--TSC-SSEEEEEETHHHHHHHHHHHHCGGG
T ss_pred HHHh-hcCcEEEEeeCC---CCCCCCCCCCcCHHH-------HHHHHHH--HhC-CCeEEEEECHHHHHHHHHHHHhhHh
Confidence 4445 468999986554 5565543211 1222 2233332 244 7899999999999999999999999
Q ss_pred eeEEEeccCC
Q 005240 627 FCCGIARSGS 636 (706)
Q Consensus 627 ~~a~v~~~~~ 636 (706)
++++|..++.
T Consensus 99 v~~lvl~~~~ 108 (258)
T 1m33_A 99 VRALVTVASS 108 (258)
T ss_dssp EEEEEEESCC
T ss_pred hceEEEECCC
Confidence 9999987653
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=98.24 E-value=0.00029 Score=69.26 Aligned_cols=193 Identities=10% Similarity=-0.046 Sum_probs=114.1
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~ 111 (706)
....++++|||+ |+++. . ...|++++.+++....+..... ..+..+.++|||+ |++...
T Consensus 68 ~p~~i~~~~~g~-l~v~~---------~-~~~i~~~d~~~~~~~~~~~~~~----~~p~~i~~~~~g~-l~v~~~----- 126 (270)
T 1rwi_B 68 QPQGLAVDGAGT-VYVTD---------F-NNRVVTLAAGSNNQTVLPFDGL----NYPEGLAVDTQGA-VYVADR----- 126 (270)
T ss_dssp SCCCEEECTTCC-EEEEE---------T-TTEEEEECTTCSCCEECCCCSC----SSEEEEEECTTCC-EEEEEG-----
T ss_pred CcceeEECCCCC-EEEEc---------C-CCEEEEEeCCCceEeeeecCCc----CCCcceEECCCCC-EEEEEC-----
Confidence 567889999998 54432 2 4689999988876655532111 1256788899998 444421
Q ss_pred CCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCC-CceecCCC--ceEeeeeeCCCCcE
Q 005240 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TAKDFGTP--AVYTAVEPSPDQKY 188 (706)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g-~~~~lt~~--~~~~~~~~SpDG~~ 188 (706)
....|++++... ........ .....++++|||+
T Consensus 127 -------------------------------------------~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~- 162 (270)
T 1rwi_B 127 -------------------------------------------GNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGN- 162 (270)
T ss_dssp -------------------------------------------GGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCC-
T ss_pred -------------------------------------------CCCEEEEEECCCceeEeeccccCCCceeEEEeCCCC-
Confidence 125677776633 22222222 3567889999997
Q ss_pred EEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCC
Q 005240 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDA 268 (706)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~ 268 (706)
|+++... ...|++++.++........... ..+..+.++++|. ||+....
T Consensus 163 l~v~~~~------------~~~i~~~~~~~~~~~~~~~~~~------------~~p~~i~~d~~g~--l~v~~~~----- 211 (270)
T 1rwi_B 163 VYVTDTD------------NNRVVKLEAESNNQVVLPFTDI------------TAPWGIAVDEAGT--VYVTEHN----- 211 (270)
T ss_dssp EEEEEGG------------GTEEEEECTTTCCEEECCCSSC------------CSEEEEEECTTCC--EEEEETT-----
T ss_pred EEEEECC------------CCEEEEEecCCCceEeecccCC------------CCceEEEECCCCC--EEEEECC-----
Confidence 6555433 2479999998776544322111 1234678999984 6654311
Q ss_pred ccccCccceeeeecCCCCCCCCceEEeec-ccccccceecCCCceEEEEeeccccceEEEEEcCCC
Q 005240 269 NVEVSPRDIIYTQPAEPAEGEKPEILHKL-DLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (706)
Q Consensus 269 ~~~~~~~~~l~~~d~~~~~~~~~~~l~~~-~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~ 333 (706)
...|++++. ++.....+... ......+.+++||+ |+++. . ...+|.++++..
T Consensus 212 ------~~~v~~~~~---~~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~-~--~~~~v~~~~~~~ 264 (270)
T 1rwi_B 212 ------TNQVVKLLA---GSTTSTVLPFTGLNTPLAVAVDSDRT-VYVAD-R--GNDRVVKLTSLE 264 (270)
T ss_dssp ------TSCEEEECT---TCSCCEECCCCSCSCEEEEEECTTCC-EEEEE-G--GGTEEEEECCCG
T ss_pred ------CCcEEEEcC---CCCcceeeccCCCCCceeEEECCCCC-EEEEE-C--CCCEEEEEcCCC
Confidence 124777777 44443333222 23466788999996 55443 2 334688888765
|
| >1w52_X Pancreatic lipase related protein 2; detergent, cleaved flap; HET: DDQ; 2.99A {Equus caballus} | Back alignment and structure |
|---|
Probab=98.24 E-value=1.6e-06 Score=92.34 Aligned_cols=109 Identities=7% Similarity=-0.060 Sum_probs=74.4
Q ss_pred ceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHC-CeEEEEcCCCCcCCCCCCCCc--hhhHHHHHHHHHHH
Q 005240 513 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLAR-RFAVLAGPSIPIIGEGDKLPN--DRFVEQLVSSAEAA 589 (706)
Q Consensus 513 ~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-G~~v~~~~~~~~~g~g~~~~~--~~~~~~~~~D~~~~ 589 (706)
.|+||++||.+.. ....+....+..|++. ||.|+..+.+ |+|.+... ........+|+.+.
T Consensus 70 ~p~vvliHG~~~~-------------~~~~w~~~~~~~l~~~~~~~Vi~~D~~---g~G~S~~~~~~~~~~~~~~dl~~~ 133 (452)
T 1w52_X 70 RKTHFVIHGFRDR-------------GEDSWPSDMCKKILQVETTNCISVDWS---SGAKAEYTQAVQNIRIVGAETAYL 133 (452)
T ss_dssp SCEEEEECCTTCC-------------SSSSHHHHHHHHHHTTSCCEEEEEECH---HHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCC-------------CCchHHHHHHHHHHhhCCCEEEEEecc---cccccccHHHHHhHHHHHHHHHHH
Confidence 3789999995311 0000111134555554 9999986654 44544321 11234567888899
Q ss_pred HHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCC
Q 005240 590 VEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSY 637 (706)
Q Consensus 590 ~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~ 637 (706)
+++|.++.-++.+++.|+|||+||++|+.++.+.|++++.++...|..
T Consensus 134 i~~L~~~~g~~~~~i~LvGhSlGg~vA~~~a~~~p~~v~~iv~ldpa~ 181 (452)
T 1w52_X 134 IQQLLTELSYNPENVHIIGHSLGAHTAGEAGRRLEGRVGRVTGLDPAE 181 (452)
T ss_dssp HHHHHHHHCCCGGGEEEEEETHHHHHHHHHHHHTTTCSSEEEEESCBC
T ss_pred HHHHHHhcCCCcccEEEEEeCHHHHHHHHHHHhcccceeeEEeccccc
Confidence 999876533456899999999999999999999999999999887653
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.22 E-value=0.00028 Score=80.33 Aligned_cols=202 Identities=10% Similarity=0.062 Sum_probs=127.8
Q ss_pred CcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCC----ceeecccCCCccccccccceEEecCCcEEEEEec
Q 005240 31 AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETG----EAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIP 106 (706)
Q Consensus 31 ~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g----~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~ 106 (706)
.....+.|.+.+.+|+++. .....|+.+++++. ....+.... +. .+..++..+.++.||++-.
T Consensus 424 ~~~~gl~~d~~~~~lY~sD---------~~~~~I~~~~l~g~~~~~~~~~vi~~~---l~-~P~GLAvD~~~~~LY~tD~ 490 (791)
T 3m0c_C 424 RNVVALDTEVASNRIYWSD---------LSQRMICSTQLDRAHGVSSYDTVISRD---IQ-APDGLAVDWIHSNIYWTDS 490 (791)
T ss_dssp SSEEEEEEETTTTEEEEEE---------TTTTEEEEEEC--------CEEEECSS---CS-CCCEEEEETTTTEEEEEET
T ss_pred CceEEEeecccCCeeEEee---------ccceeEEEEeccCCCCCcceeEEEecC---CC-CcceeeeeecCCcEEEEec
Confidence 3466788999888997764 33467999888763 233332211 11 1557788888888887631
Q ss_pred CCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCC-CceecCC-C-ceEeeeeeC
Q 005240 107 SSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TAKDFGT-P-AVYTAVEPS 183 (706)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g-~~~~lt~-~-~~~~~~~~S 183 (706)
....|++++++| ..+.|.. . .....+++.
T Consensus 491 ------------------------------------------------~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVD 522 (791)
T 3m0c_C 491 ------------------------------------------------VLGTVSVADTKGVKRKTLFRENGSKPRAIVVD 522 (791)
T ss_dssp ------------------------------------------------TTTEEEEEETTSSSEEEEEECTTCCEEEEEEE
T ss_pred ------------------------------------------------CCCeEEEEeCCCCeEEEEEeCCCCCcceEEEe
Confidence 226899999988 4344432 2 567899999
Q ss_pred CCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEec
Q 005240 184 PDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQ 263 (706)
Q Consensus 184 pDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~ 263 (706)
|.+.+|+++.... ...|++.+++|...+.+..... ..+..+++.+++.. |||+...
T Consensus 523 p~~g~LYwtD~g~-----------~~~I~~~~~dG~~~~~lv~~~l------------~~P~GLavD~~~~~-LYwaD~~ 578 (791)
T 3m0c_C 523 PVHGFMYWTDWGT-----------PAKIKKGGLNGVDIYSLVTENI------------QWPNGITLDLLSGR-LYWVDSK 578 (791)
T ss_dssp TTTTEEEEEECSS-----------SCEEEEEETTSCCEEEEECSSC------------SCEEEEEEETTTTE-EEEEETT
T ss_pred cCCCCEEEecCCC-----------CCeEEEEecCCCceEEEEeCCC------------CCceEEEEecCCCe-EEEEeCC
Confidence 9998998876432 2479999999988777655322 12346788888876 8887311
Q ss_pred cCCCCccccCccceeeeecCCCCCCCCceEEeeccccc-ccceecCCCceEEEEeeccccceEEEEEcCCCC
Q 005240 264 DRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRF-RSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK 334 (706)
Q Consensus 264 ~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~-~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~ 334 (706)
...|.++++ ++...+.+....... ..+..+.++..||++.+ ....|+++|..++
T Consensus 579 -----------~~~I~~~d~---dG~~~~~v~~~~~~l~~P~glav~~~~lYwtD~---~~~~I~~~dk~tG 633 (791)
T 3m0c_C 579 -----------LHSISSIDV---NGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDI---INEAIFSANRLTG 633 (791)
T ss_dssp -----------TTEEEEEET---TSCSCEEEEECTTTTSSEEEEEEETTEEEEEET---TTTEEEEEETTTC
T ss_pred -----------CCcEEEEec---CCCceEEEecCCCccCCCCEEEEeCCEEEEEEC---CCCEEEEEeCCCC
Confidence 135888888 676766665433222 22233345557777642 3457899987664
|
| >3c5v_A PME-1, protein phosphatase methylesterase 1; demethylase, PP2A, alternative splicing, hydrolase, phosphoprotein, serine esterase; 2.00A {Homo sapiens} PDB: 3c5w_P | Back alignment and structure |
|---|
Probab=98.22 E-value=2.4e-05 Score=79.45 Aligned_cols=100 Identities=16% Similarity=0.173 Sum_probs=68.1
Q ss_pred eEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHH-CCeEEEEcCCCCcCCCCCCCCc---hhhHHHHHHHHHHH
Q 005240 514 PCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA-RRFAVLAGPSIPIIGEGDKLPN---DRFVEQLVSSAEAA 589 (706)
Q Consensus 514 p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~G~~v~~~~~~~~~g~g~~~~~---~~~~~~~~~D~~~~ 589 (706)
|.||++||.+.. ...| ......|++ .+|.|+.++.+ |+|.+... ....+...+|+.+.
T Consensus 39 p~lvllHG~~~~-----------~~~w----~~~~~~L~~~~~~~via~Dl~---GhG~S~~~~~~~~~~~~~a~dl~~~ 100 (316)
T 3c5v_A 39 PVLLLLHGGGHS-----------ALSW----AVFTAAIISRVQCRIVALDLR---SHGETKVKNPEDLSAETMAKDVGNV 100 (316)
T ss_dssp CEEEEECCTTCC-----------GGGG----HHHHHHHHTTBCCEEEEECCT---TSTTCBCSCTTCCCHHHHHHHHHHH
T ss_pred cEEEEECCCCcc-----------cccH----HHHHHHHhhcCCeEEEEecCC---CCCCCCCCCccccCHHHHHHHHHHH
Confidence 678999996421 1111 123444554 28999996654 56665432 22467778899998
Q ss_pred HHHHHHcCCCCCCcEEEEEechHHHHHHHHHHh--CCCceeEEEeccC
Q 005240 590 VEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAH--APHLFCCGIARSG 635 (706)
Q Consensus 590 ~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~--~p~~~~a~v~~~~ 635 (706)
++.+... + +.++.|+||||||.+++.++.+ .|+ ++++|..++
T Consensus 101 l~~l~~~--~-~~~~~lvGhSmGG~ia~~~A~~~~~p~-v~~lvl~~~ 144 (316)
T 3c5v_A 101 VEAMYGD--L-PPPIMLIGHSMGGAIAVHTASSNLVPS-LLGLCMIDV 144 (316)
T ss_dssp HHHHHTT--C-CCCEEEEEETHHHHHHHHHHHTTCCTT-EEEEEEESC
T ss_pred HHHHhcc--C-CCCeEEEEECHHHHHHHHHHhhccCCC-cceEEEEcc
Confidence 8887421 1 2689999999999999999996 576 888887653
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=98.22 E-value=1.4e-05 Score=90.32 Aligned_cols=202 Identities=10% Similarity=0.042 Sum_probs=120.4
Q ss_pred CCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCC----CceeecccCCCccccccccceEEecCCcEEEEE
Q 005240 29 DGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAET----GEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (706)
Q Consensus 29 ~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~----g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~ 104 (706)
.......+.|+|++.+|+++. .....|+++++++ .....+.... +. .+..+++.+.+..||++
T Consensus 404 ~~~~p~gla~d~~~~~Ly~sD---------~~~~~I~~~~~~g~~~~~~~~~~i~~~---~~-~P~glavD~~~g~LY~t 470 (699)
T 1n7d_A 404 NLRNVVALDTEVASNRIYWSD---------LSQRMICSTQLDRAHGVSSYDTVISRD---IQ-APDGLAVDWIHSNIYWT 470 (699)
T ss_dssp CCTTCCCCEEETTTTEEEECC---------TTTTSBEEEESCCCCC-CCCCCBCCSC---C---CCCEECCCSSSBCEEC
T ss_pred cCcceEEEccccccCeEEEEe---------cCCCeEEEEecCCCCCCcceEEEEeCC---CC-CcceEEEEeeCCcEEEE
Confidence 334577889999999997753 2346799999876 2322222111 00 13455666555556654
Q ss_pred ecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCC-CceecCC-C-ceEeeee
Q 005240 105 IPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TAKDFGT-P-AVYTAVE 181 (706)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g-~~~~lt~-~-~~~~~~~ 181 (706)
-. ....|++++++| ..+.+.. . .....++
T Consensus 471 D~------------------------------------------------~~~~I~v~d~dg~~~~~l~~~~~~~P~gia 502 (699)
T 1n7d_A 471 DS------------------------------------------------VLGTVSVADTKGVKRKTLFREQGSKPRAIV 502 (699)
T ss_dssp CT------------------------------------------------TTSCEEEEBSSSCCEEEECCCSSCCCCCEE
T ss_pred ec------------------------------------------------cCCeEEEEecCCCceEEEEeCCCCCcceEE
Confidence 11 125788899977 4444433 2 4567889
Q ss_pred eCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEE
Q 005240 182 PSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVE 261 (706)
Q Consensus 182 ~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~ 261 (706)
++|++.+|+++.... ...|+++++++...+.+..... ..+..++|+|+++. |||+.
T Consensus 503 vDp~~g~ly~td~~~-----------~~~I~~~~~dG~~~~~l~~~~l------------~~PnGlavd~~~~~-LY~aD 558 (699)
T 1n7d_A 503 VDPVHGFMYWTDWGT-----------PAKIKKGGLNGVDIYSLVTENI------------QWPNGITLDLLSGR-LYWVD 558 (699)
T ss_dssp CCSSSSCCEECCCSS-----------SCCEEBCCSSSCCCCEESCSSC------------SSCCCEEECTTTCC-EEEEE
T ss_pred EccCCCcEEEcccCC-----------CCeEEEEeCCCCCeeEEEeCCC------------CCccEEEEeccCCE-EEEEe
Confidence 999998988765331 1478888888776555533221 11347899999887 88773
Q ss_pred eccCCCCccccCccceeeeecCCCCCCCCceEEeeccc---ccccceecCCCceEEEEeeccccceEEEEEcCCCC
Q 005240 262 AQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDL---RFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK 334 (706)
Q Consensus 262 ~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~---~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~ 334 (706)
.. ...|++++. ++...+.+..... ....+++ |+..|+++.+ ...+|++++..++
T Consensus 559 ~~-----------~~~I~~~d~---dG~~~~~~~~~~~~~~~P~glav--d~~~lywtd~---~~~~V~~~d~~~G 615 (699)
T 1n7d_A 559 SK-----------LHSISSIDV---NGGNRKTILEDEKRLAHPFSLAV--FEDKVFWTDI---INEAIFSANRLTG 615 (699)
T ss_dssp TT-----------TTEEEEECS---SSSCCEEECCCSSSCSSCCCCEE--ETTEEEEECS---TTTCEEEEETTTE
T ss_pred cC-----------CCeEEEEcc---CCCceEEEEecCCcCCCceEeEE--ECCEEEEEeC---CCCeEEEEEccCC
Confidence 21 235888888 5656665543221 1223333 4456676542 2346888887653
|
| >3lcr_A Tautomycetin biosynthetic PKS; alpha-beta hydrolase, thioesterase, polyketide synthase, phosphopantetheine, transferase, hydrolase; 2.00A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=98.22 E-value=1.5e-05 Score=81.18 Aligned_cols=80 Identities=16% Similarity=0.012 Sum_probs=56.4
Q ss_pred HHHHHHCCeEEEEcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhC---C
Q 005240 548 SLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHA---P 624 (706)
Q Consensus 548 ~~~l~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~---p 624 (706)
+..| +.||.|+..+.+ |+|.+............|+...++.+. +..++.++||||||.+++.++.+. |
T Consensus 103 ~~~L-~~~~~v~~~d~~---G~G~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~lvGhS~Gg~vA~~~A~~~~~~~ 173 (319)
T 3lcr_A 103 AEEL-DAGRRVSALVPP---GFHGGQALPATLTVLVRSLADVVQAEV-----ADGEFALAGHSSGGVVAYEVARELEARG 173 (319)
T ss_dssp HHHH-CTTSEEEEEECT---TSSTTCCEESSHHHHHHHHHHHHHHHH-----TTSCEEEEEETHHHHHHHHHHHHHHHTT
T ss_pred HHHh-CCCceEEEeeCC---CCCCCCCCCCCHHHHHHHHHHHHHHhc-----CCCCEEEEEECHHHHHHHHHHHHHHhcC
Confidence 4444 789999885554 455443333345556666666655543 226899999999999999999887 7
Q ss_pred CceeEEEeccCC
Q 005240 625 HLFCCGIARSGS 636 (706)
Q Consensus 625 ~~~~a~v~~~~~ 636 (706)
++++++|...+.
T Consensus 174 ~~v~~lvl~~~~ 185 (319)
T 3lcr_A 174 LAPRGVVLIDSY 185 (319)
T ss_dssp CCCSCEEEESCC
T ss_pred CCccEEEEECCC
Confidence 889988887754
|
| >3g02_A Epoxide hydrolase; alpha/beta hydrolase fold, enantioselective, mutant, directed evolution; 1.50A {Aspergillus niger} SCOP: c.69.1.11 PDB: 1qo7_A 3g0i_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=1.5e-05 Score=83.77 Aligned_cols=117 Identities=10% Similarity=0.001 Sum_probs=75.8
Q ss_pred CCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHH------CCeEEEEcCCC
Q 005240 491 DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA------RRFAVLAGPSI 564 (706)
Q Consensus 491 dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~G~~v~~~~~~ 564 (706)
+|..|+.....+.+ ++ .|.||++||.+.. ...+ ......|++ .||.|++++.+
T Consensus 93 ~g~~i~~~~~~~~~--~~----~~pllllHG~~~s-----------~~~~----~~~~~~L~~~~~~~~~gf~vv~~Dlp 151 (408)
T 3g02_A 93 EGLTIHFAALFSER--ED----AVPIALLHGWPGS-----------FVEF----YPILQLFREEYTPETLPFHLVVPSLP 151 (408)
T ss_dssp TTEEEEEEEECCSC--TT----CEEEEEECCSSCC-----------GGGG----HHHHHHHHHHCCTTTCCEEEEEECCT
T ss_pred CCEEEEEEEecCCC--CC----CCeEEEECCCCCc-----------HHHH----HHHHHHHhcccccccCceEEEEECCC
Confidence 89999988887643 11 3568889997521 1111 234556666 59999996654
Q ss_pred CcCCCCCCCCc----hhhHHHHHHHHHHHHHHHHHcCCCCCC-cEEEEEechHHHHHHHHHHhCCCceeEEEeccCCC
Q 005240 565 PIIGEGDKLPN----DRFVEQLVSSAEAAVEEVVRRGVADPS-RIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSY 637 (706)
Q Consensus 565 ~~~g~g~~~~~----~~~~~~~~~D~~~~~~~l~~~~~id~~-~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~ 637 (706)
|+|.+... ........+|+...++.+ + -+ ++.+.|||+||.+++.++.++|+++...+..++..
T Consensus 152 ---G~G~S~~~~~~~~~~~~~~a~~~~~l~~~l---g---~~~~~~lvG~S~Gg~ia~~~A~~~p~~~~~~l~~~~~~ 220 (408)
T 3g02_A 152 ---GYTFSSGPPLDKDFGLMDNARVVDQLMKDL---G---FGSGYIIQGGDIGSFVGRLLGVGFDACKAVHLNFCNMS 220 (408)
T ss_dssp ---TSTTSCCSCSSSCCCHHHHHHHHHHHHHHT---T---CTTCEEEEECTHHHHHHHHHHHHCTTEEEEEESCCCCC
T ss_pred ---CCCCCCCCCCCCCCCHHHHHHHHHHHHHHh---C---CCCCEEEeCCCchHHHHHHHHHhCCCceEEEEeCCCCC
Confidence 55555332 122444555555544432 2 34 89999999999999999999987776666655443
|
| >3b12_A Fluoroacetate dehalogenase; dehalogease, hydrolase; 1.20A {Burkholderia SP} PDB: 1y37_A | Back alignment and structure |
|---|
Probab=97.51 E-value=1.9e-07 Score=94.09 Aligned_cols=99 Identities=11% Similarity=0.096 Sum_probs=67.7
Q ss_pred eEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCCCCc-------hhhHHHHHHHH
Q 005240 514 PCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPN-------DRFVEQLVSSA 586 (706)
Q Consensus 514 p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~-------~~~~~~~~~D~ 586 (706)
|.||++||.+.. ...+ ...+..|+ .||.|+..+.+ |+|.+... ........+|+
T Consensus 26 p~vv~lHG~~~~-----------~~~~----~~~~~~l~-~g~~v~~~D~~---G~G~s~~~~~~~~~~~~~~~~~~~~l 86 (304)
T 3b12_A 26 PALLLLHGFPQN-----------LHMW----ARVAPLLA-NEYTVVCADLR---GYGGSSKPVGAPDHANYSFRAMASDQ 86 (304)
Confidence 679999996421 1111 12344455 89999986655 45555332 11233445666
Q ss_pred HHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCC
Q 005240 587 EAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSY 637 (706)
Q Consensus 587 ~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~ 637 (706)
.++++++ +.+++.++|||+||.+++.++.++|++++++|+.++..
T Consensus 87 ~~~l~~l------~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 131 (304)
T 3b12_A 87 RELMRTL------GFERFHLVGHARGGRTGHRMALDHPDSVLSLAVLDIIP 131 (304)
Confidence 6665554 34689999999999999999999999999999998754
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=98.19 E-value=0.00039 Score=68.88 Aligned_cols=182 Identities=14% Similarity=0.013 Sum_probs=106.6
Q ss_pred CCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccc
Q 005240 59 SCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMT 138 (706)
Q Consensus 59 ~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (706)
.+...|+++|.++|+...-...... ..+....++|||+.|+ ...
T Consensus 12 ~~~~~v~~~d~~tG~~~w~~~~~~~---~~~~~~~~~pdG~ilv-s~~-------------------------------- 55 (276)
T 3no2_A 12 SGWNKIAIINKDTKEIVWEYPLEKG---WECNSVAATKAGEILF-SYS-------------------------------- 55 (276)
T ss_dssp TTCSEEEEEETTTTEEEEEEECCTT---CCCCEEEECTTSCEEE-ECB--------------------------------
T ss_pred CCCCEEEEEECCCCeEEEEeCCCcc---CCCcCeEECCCCCEEE-eCC--------------------------------
Confidence 4457889999977765433222210 1256778999999766 311
Q ss_pred hhccCCchhhhhhhhcccceEEEEccCC-CceecCCC--ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEe
Q 005240 139 DNLLKDEYDESLFDYYTTAQLVLGSLDG-TAKDFGTP--AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWT 215 (706)
Q Consensus 139 ~~~~~~~~d~~~~~~~~~~~l~~~~l~g-~~~~lt~~--~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~ 215 (706)
..++.+|.+| ...++..+ ..+..+.++|||+.|+..... ...++.++
T Consensus 56 ------------------~~V~~~d~~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~------------~~~v~~vd 105 (276)
T 3no2_A 56 ------------------KGAKMITRDGRELWNIAAPAGCEMQTARILPDGNALVAWCGH------------PSTILEVN 105 (276)
T ss_dssp ------------------SEEEEECTTSCEEEEEECCTTCEEEEEEECTTSCEEEEEEST------------TEEEEEEC
T ss_pred ------------------CCEEEECCCCCEEEEEcCCCCccccccEECCCCCEEEEecCC------------CCEEEEEe
Confidence 3566677766 33333332 356678899999988755431 13678888
Q ss_pred cCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEe
Q 005240 216 TDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH 295 (706)
Q Consensus 216 ~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~ 295 (706)
.+|+.+.++.-..... .+. ...+.+...+||.. |+ .. . ....|+.+|. + |+...-.
T Consensus 106 ~~Gk~l~~~~~~~~~~-~~~------~~~~~v~~~~~G~~-lv-~~-~----------~~~~v~~~d~---~-G~~~w~~ 161 (276)
T 3no2_A 106 MKGEVLSKTEFETGIE-RPH------AQFRQINKNKKGNY-LV-PL-F----------ATSEVREIAP---N-GQLLNSV 161 (276)
T ss_dssp TTSCEEEEEEECCSCS-SGG------GSCSCCEECTTSCE-EE-EE-T----------TTTEEEEECT---T-SCEEEEE
T ss_pred CCCCEEEEEeccCCCC-ccc------ccccCceECCCCCE-EE-Ee-c----------CCCEEEEECC---C-CCEEEEE
Confidence 8887666654321110 010 11234567888884 33 31 1 1235788887 5 5544433
Q ss_pred ecccccccceecCCCceEEEEeeccccceEEEEEcCCCC
Q 005240 296 KLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK 334 (706)
Q Consensus 296 ~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~ 334 (706)
............++|..++... ...+|+.+|++++
T Consensus 162 ~~~~~~~~~~~~~~g~~~v~~~----~~~~v~~~d~~tG 196 (276)
T 3no2_A 162 KLSGTPFSSAFLDNGDCLVACG----DAHCFVQLNLESN 196 (276)
T ss_dssp ECSSCCCEEEECTTSCEEEECB----TTSEEEEECTTTC
T ss_pred ECCCCccceeEcCCCCEEEEeC----CCCeEEEEeCcCC
Confidence 3333445566788998777643 2346999999974
|
| >1hpl_A Lipase; hydrolase(carboxylic esterase); 2.30A {Equus caballus} SCOP: b.12.1.2 c.69.1.19 | Back alignment and structure |
|---|
Probab=98.15 E-value=6.1e-06 Score=87.40 Aligned_cols=83 Identities=10% Similarity=-0.042 Sum_probs=60.5
Q ss_pred HHCCeEEEEcCCCCcCCCCCCCCch--hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeE
Q 005240 552 LARRFAVLAGPSIPIIGEGDKLPND--RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCC 629 (706)
Q Consensus 552 ~~~G~~v~~~~~~~~~g~g~~~~~~--~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a 629 (706)
.+.+|.|+..+.+ |+|.+.... .......+++...+++|.++.-++.+++.++|||+||++|+.++.+.|++++.
T Consensus 96 ~~~~~~VI~vD~~---g~g~s~y~~~~~~~~~v~~~la~ll~~L~~~~g~~~~~v~LIGhSlGg~vA~~~a~~~p~~v~~ 172 (449)
T 1hpl_A 96 KVESVNCICVDWK---SGSRTAYSQASQNVRIVGAEVAYLVGVLQSSFDYSPSNVHIIGHSLGSHAAGEAGRRTNGAVGR 172 (449)
T ss_dssp HHCCEEEEEEECH---HHHSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCGGGEEEEEETHHHHHHHHHHHHTTTCSSE
T ss_pred hcCCeEEEEEeCC---cccCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccEEEEEECHhHHHHHHHHHhcchhcce
Confidence 4579999986654 344432111 12334567788888888754335678999999999999999999999999999
Q ss_pred EEeccCCC
Q 005240 630 GIARSGSY 637 (706)
Q Consensus 630 ~v~~~~~~ 637 (706)
++...|..
T Consensus 173 iv~Ldpa~ 180 (449)
T 1hpl_A 173 ITGLDPAE 180 (449)
T ss_dssp EEEESCBC
T ss_pred eeccCccc
Confidence 98877653
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=0.0007 Score=75.31 Aligned_cols=221 Identities=13% Similarity=0.051 Sum_probs=139.8
Q ss_pred cceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCcc
Q 005240 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~ 84 (706)
.+|...+|+. .....+.-++.......+.|+|++.+|+++. .....|+.++++++..+.+......
T Consensus 15 ~~I~~i~l~~----~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD---------~~~~~I~r~~~~g~~~~~v~~~g~~- 80 (628)
T 4a0p_A 15 ADIRRISLET----NNNNVAIPLTGVKEASALDFDVTDNRIYWTD---------ISLKTISRAFMNGSALEHVVEFGLD- 80 (628)
T ss_dssp TEEEEEESSC----TTCEEECCCCSCSCEEEEEEETTTTEEEEEE---------TTTTEEEEEETTSCSCEEEECSSCS-
T ss_pred CcEEEEECCC----CCcceEEEcCCCCceEEEEEECCCCEEEEEE---------CCCCeEEEEECCCCCcEEEEeCCCC-
Confidence 3566666754 3333332122223566789999999997764 3346899999988766655432211
Q ss_pred ccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc
Q 005240 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (706)
Q Consensus 85 ~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l 164 (706)
.+..++..+.++.||++-. ....|.++++
T Consensus 81 ---~P~GlAvD~~~~~LY~tD~------------------------------------------------~~~~I~v~~~ 109 (628)
T 4a0p_A 81 ---YPEGMAVDWLGKNLYWADT------------------------------------------------GTNRIEVSKL 109 (628)
T ss_dssp ---CCCEEEEETTTTEEEEEET------------------------------------------------TTTEEEEEET
T ss_pred ---CcceEEEEeCCCEEEEEEC------------------------------------------------CCCEEEEEec
Confidence 1556778778888887621 1268999999
Q ss_pred CC-CceecC-CC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccC
Q 005240 165 DG-TAKDFG-TP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVR 241 (706)
Q Consensus 165 ~g-~~~~lt-~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~ 241 (706)
+| ..+.|. .. .....+++.|...+|+++.... ...|++.+++|...+.+...-
T Consensus 110 dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~-----------~~~I~r~~~dG~~~~~l~~~~------------- 165 (628)
T 4a0p_A 110 DGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGG-----------KPKIDRAAMDGSERTTLVPNV------------- 165 (628)
T ss_dssp TSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSS-----------SCEEEEEETTSCSCEEEECSC-------------
T ss_pred CCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCC-----------CCEEEEEeCCCCceEEEECCC-------------
Confidence 88 333443 33 5678999999888898876432 248999999998877765321
Q ss_pred CCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccc
Q 005240 242 EGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKT 321 (706)
Q Consensus 242 ~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~ 321 (706)
..+..++++++++. |||+.. ..+.|+.++. +++..+.+...-.....++.. +..|+++.+
T Consensus 166 ~~P~GlalD~~~~~-LY~aD~-----------~~~~I~~~d~---dG~~~~v~~~~l~~P~glav~--~~~ly~tD~--- 225 (628)
T 4a0p_A 166 GRANGLTIDYAKRR-LYWTDL-----------DTNLIESSNM---LGLNREVIADDLPHPFGLTQY--QDYIYWTDW--- 225 (628)
T ss_dssp SSEEEEEEETTTTE-EEEEET-----------TTTEEEEEET---TSCSCEEEEECCSCEEEEEEE--TTEEEEEET---
T ss_pred CCcceEEEccccCE-EEEEEC-----------CCCEEEEEcC---CCCceEEeeccCCCceEEEEE--CCEEEEecC---
Confidence 12347889998887 888742 1235888888 565555444332333344443 346676542
Q ss_pred cceEEEEEcCCCC
Q 005240 322 SQTRTWLVCPGSK 334 (706)
Q Consensus 322 ~~~~l~~~d~~~~ 334 (706)
....|+++|..++
T Consensus 226 ~~~~I~~~dk~tg 238 (628)
T 4a0p_A 226 SRRSIERANKTSG 238 (628)
T ss_dssp TTTEEEEEETTTC
T ss_pred CCCEEEEEECCCC
Confidence 3446899997665
|
| >3fle_A SE_1780 protein; structural genomics, APC61035.1, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.01A {Staphylococcus epidermidis} | Back alignment and structure |
|---|
Probab=98.11 E-value=4.5e-05 Score=74.12 Aligned_cols=57 Identities=14% Similarity=0.134 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCC-----ceeEEEeccCCCC
Q 005240 580 EQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH-----LFCCGIARSGSYN 638 (706)
Q Consensus 580 ~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~-----~~~a~v~~~~~~d 638 (706)
....+++..+++++.++.. .+++.++||||||.+++.++.++|+ +++.+|+.++.++
T Consensus 77 ~~~~~~l~~~i~~l~~~~~--~~~~~lvGHSmGG~ia~~~~~~~~~~~~~~~v~~lv~i~~p~~ 138 (249)
T 3fle_A 77 KENAYWIKEVLSQLKSQFG--IQQFNFVGHSMGNMSFAFYMKNYGDDRHLPQLKKEVNIAGVYN 138 (249)
T ss_dssp HHHHHHHHHHHHHHHHTTC--CCEEEEEEETHHHHHHHHHHHHHSSCSSSCEEEEEEEESCCTT
T ss_pred HHHHHHHHHHHHHHHHHhC--CCceEEEEECccHHHHHHHHHHCcccccccccceEEEeCCccC
Confidence 4456778888888877633 3689999999999999999998864 7999999987664
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.09 E-value=0.00098 Score=67.10 Aligned_cols=247 Identities=12% Similarity=0.083 Sum_probs=126.2
Q ss_pred CCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCC
Q 005240 19 GPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNS 98 (706)
Q Consensus 19 g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg 98 (706)
...+.+..+|.+.....++|+|||+ |+++. .....|++++.+++....+. ... .+..+++++||
T Consensus 20 ~~~~~~~~~p~~~~pegia~~~~g~-lyv~d---------~~~~~I~~~d~~g~~~~~~~-~~~-----~p~gia~~~dG 83 (306)
T 2p4o_A 20 APAKIITSFPVNTFLENLASAPDGT-IFVTN---------HEVGEIVSITPDGNQQIHAT-VEG-----KVSGLAFTSNG 83 (306)
T ss_dssp CCEEEEEEECTTCCEEEEEECTTSC-EEEEE---------TTTTEEEEECTTCCEEEEEE-CSS-----EEEEEEECTTS
T ss_pred CCceEeEeCCCCCCcceEEECCCCC-EEEEe---------CCCCeEEEECCCCceEEEEe-CCC-----CceeEEEcCCC
Confidence 4556666677666677899999997 54542 23467999998875443332 222 25678899999
Q ss_pred cEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCCceecCCC---
Q 005240 99 TLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP--- 174 (706)
Q Consensus 99 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~~~lt~~--- 174 (706)
+ |++.... . ....|+.++. +|+.+.+...
T Consensus 84 ~-l~vad~~-~---------------------------------------------~~~~v~~~d~~~g~~~~~~~~~~~ 116 (306)
T 2p4o_A 84 D-LVATGWN-A---------------------------------------------DSIPVVSLVKSDGTVETLLTLPDA 116 (306)
T ss_dssp C-EEEEEEC-T---------------------------------------------TSCEEEEEECTTSCEEEEEECTTC
T ss_pred c-EEEEecc-C---------------------------------------------CcceEEEEcCCCCeEEEEEeCCCc
Confidence 8 4443210 0 0135777775 5655544321
Q ss_pred ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEc-ccCCCCCCCCcccCccCCCCcceeeecCC
Q 005240 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVREL-CDLPPAEDIPVCYNSVREGMRSISWRADK 253 (706)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l-~~~~~~~~~p~~~~~~~~g~~~~~~spdg 253 (706)
.....++..+++ .+++.... ...|++++.+++..+.. .........+..-. .....+ +||+
T Consensus 117 ~~~~g~~~~~~~-~~~v~d~~------------~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~---~~pngi--s~dg 178 (306)
T 2p4o_A 117 IFLNGITPLSDT-QYLTADSY------------RGAIWLIDVVQPSGSIWLEHPMLARSNSESVF---PAANGL--KRFG 178 (306)
T ss_dssp SCEEEEEESSSS-EEEEEETT------------TTEEEEEETTTTEEEEEEECGGGSCSSTTCCS---CSEEEE--EEET
T ss_pred cccCcccccCCC-cEEEEECC------------CCeEEEEeCCCCcEeEEEECCccccccccCCC---CcCCCc--CcCC
Confidence 223344445554 45443322 24789999876432211 01000000000000 011234 8998
Q ss_pred CceEEEEEeccCCCCccccCccceeeeecCCCCCCCCc--eEEeecccccccceecCCCceEEEEeeccccceEEEEEcC
Q 005240 254 PSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP--EILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCP 331 (706)
Q Consensus 254 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~--~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~ 331 (706)
+. ||+.. . ....|++++.+. .+.. ..+.........+++.+||. |+++. . ...+|++++.
T Consensus 179 ~~-lyv~d-~----------~~~~I~~~~~~~--~g~~~~~~~~~~~~~P~gi~vd~dG~-l~va~-~--~~~~V~~~~~ 240 (306)
T 2p4o_A 179 NF-LYVSN-T----------EKMLLLRIPVDS--TDKPGEPEIFVEQTNIDDFAFDVEGN-LYGAT-H--IYNSVVRIAP 240 (306)
T ss_dssp TE-EEEEE-T----------TTTEEEEEEBCT--TSCBCCCEEEEESCCCSSEEEBTTCC-EEEEC-B--TTCCEEEECT
T ss_pred CE-EEEEe-C----------CCCEEEEEEeCC--CCCCCccEEEeccCCCCCeEECCCCC-EEEEe-C--CCCeEEEECC
Confidence 76 76552 2 123578888731 1332 12222223456788899996 43332 2 2346889997
Q ss_pred CCCCCCceeeecCcccccccCCCCCceEec---cCCCEEEEee
Q 005240 332 GSKDVAPRVLFDRVFENVYSDPGSPMMTRT---STGTNVIAKI 371 (706)
Q Consensus 332 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s---~dg~~l~~~~ 371 (706)
++ +...+...... . .....+++. +|+++|++..
T Consensus 241 ~G---~~~~~~~~~~~--~--~~p~~~a~~g~~~d~~~LyVt~ 276 (306)
T 2p4o_A 241 DR---STTIIAQAEQG--V--IGSTAVAFGQTEGDCTAIYVVT 276 (306)
T ss_dssp TC---CEEEEECGGGT--C--TTEEEEEECCSTTTTTEEEEEE
T ss_pred CC---CEEEEeecccc--c--CCceEEEEecccCCCCEEEEEC
Confidence 64 22222111100 0 011135566 7888887765
|
| >2x5x_A PHB depolymerase PHAZ7; biopolymers, oxyanion HOLE, hydrolase, biodegradation, catal; HET: PG4; 1.20A {Paucimonas lemoignei} PDB: 2vtv_A* 2x76_A | Back alignment and structure |
|---|
Probab=98.09 E-value=7.7e-06 Score=83.34 Aligned_cols=88 Identities=13% Similarity=0.082 Sum_probs=61.6
Q ss_pred hHHHHHHHCCeE---EEEcCCCCcCCCCCCCCc--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHH
Q 005240 546 TSSLIFLARRFA---VLAGPSIPIIGEGDKLPN--DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLL 620 (706)
Q Consensus 546 ~~~~~l~~~G~~---v~~~~~~~~~g~g~~~~~--~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~ 620 (706)
.+...|.++||. |+..+.++ +|.+... .......++++.+.++.+.++. ..++|.|+||||||.+++.++
T Consensus 72 ~l~~~L~~~Gy~~~~V~~~D~~g---~G~S~~~~~~~~~~~~~~~l~~~I~~l~~~~--g~~~v~LVGHSmGG~iA~~~a 146 (342)
T 2x5x_A 72 SVYAELKARGYNDCEIFGVTYLS---SSEQGSAQYNYHSSTKYAIIKTFIDKVKAYT--GKSQVDIVAHSMGVSMSLATL 146 (342)
T ss_dssp CHHHHHHHTTCCTTSEEEECCSC---HHHHTCGGGCCBCHHHHHHHHHHHHHHHHHH--TCSCEEEEEETHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCeEEEEeCCC---CCccCCccccCCHHHHHHHHHHHHHHHHHHh--CCCCEEEEEECHHHHHHHHHH
Confidence 456778889998 88756543 2222111 0112334666667777776642 236899999999999999999
Q ss_pred HhC--CCceeEEEeccCCCC
Q 005240 621 AHA--PHLFCCGIARSGSYN 638 (706)
Q Consensus 621 ~~~--p~~~~a~v~~~~~~d 638 (706)
.++ |++++.+|+.++...
T Consensus 147 ~~~~~p~~V~~lVlla~p~~ 166 (342)
T 2x5x_A 147 QYYNNWTSVRKFINLAGGIR 166 (342)
T ss_dssp HHHTCGGGEEEEEEESCCTT
T ss_pred HHcCchhhhcEEEEECCCcc
Confidence 998 899999999997654
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=0.00059 Score=75.82 Aligned_cols=180 Identities=12% Similarity=0.070 Sum_probs=115.9
Q ss_pred ceeEEEEEcCCCc--eeecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccc
Q 005240 61 KLRVWIADAETGE--AKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMT 138 (706)
Q Consensus 61 ~~~l~~~d~~~g~--~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (706)
..+|.++++++.. ...+...... ...++|++++..||++-.
T Consensus 17 ~~~I~~i~~~~~~~~~~~~~~~~~~-----~~~ld~~~~~~~ly~sD~-------------------------------- 59 (619)
T 3s94_A 17 RRDLRLVDATNGKENATIVVGGLED-----AAAVDFVFSHGLIYWSDV-------------------------------- 59 (619)
T ss_dssp SSBEEEECCC---------CBCCSC-----EEEEEEETTTTEEEEEET--------------------------------
T ss_pred cccEEEEeCCCCcceEEEEEcCCCc-----eEEEEEEeCCCEEEEEEC--------------------------------
Confidence 4789999998753 2222211111 457789998888887621
Q ss_pred hhccCCchhhhhhhhcccceEEEEccCCC---ceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEE
Q 005240 139 DNLLKDEYDESLFDYYTTAQLVLGSLDGT---AKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVW 214 (706)
Q Consensus 139 ~~~~~~~~d~~~~~~~~~~~l~~~~l~g~---~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~ 214 (706)
....|++++++|. ...+..+ .....+++.+.++.|+++... ...|.+.
T Consensus 60 ----------------~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~------------~~~I~v~ 111 (619)
T 3s94_A 60 ----------------SEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSE------------TNRIEVS 111 (619)
T ss_dssp ----------------TTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETT------------TTEEEEE
T ss_pred ----------------CCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCC------------CCEEEEE
Confidence 1257888888773 2233444 567889999999999887644 2589999
Q ss_pred ecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEE
Q 005240 215 TTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEIL 294 (706)
Q Consensus 215 ~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l 294 (706)
+++|+..+.|..... ..++.++..|.+.. |||... +. ...|++.+. +|...+.+
T Consensus 112 ~~dG~~~~~l~~~~l------------~~P~~Iavdp~~g~-ly~tD~---g~-------~~~I~r~~~---dG~~~~~l 165 (619)
T 3s94_A 112 NLDGSLRKVLFWQEL------------DQPRAIALDPSSGF-MYWTDW---GE-------VPKIERAGM---DGSSRFII 165 (619)
T ss_dssp ETTSCSCEEEECSSC------------SCCCCEEEETTTTE-EEEEEC---SS-------SCEEEEEET---TSCSCEEE
T ss_pred ECCCCCEEEEEeCCC------------CCCceEEEecCCCe-EEEecc---CC-------CCEEEEEEC---CCCceEEE
Confidence 999887776654322 23568899998766 887731 11 135888887 66666666
Q ss_pred ee-cccccccceecCCCceEEEEeeccccceEEEEEcCCCC
Q 005240 295 HK-LDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK 334 (706)
Q Consensus 295 ~~-~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~ 334 (706)
.. .-.....++..++++.|+++.. ....|+++|+++.
T Consensus 166 ~~~~~~~P~Glald~~~~~LY~aD~---~~~~I~~~~~dG~ 203 (619)
T 3s94_A 166 INSEIYWPNGLTLDYEEQKLYWADA---KLNFIHKSNLDGT 203 (619)
T ss_dssp ECSSCSSEEEEEEETTTTEEEEEET---TTCCEEEESSSCC
T ss_pred EeCCCCCCcEEEEEccCCEEEEEeC---CCCeEEEecCCCC
Confidence 53 2334567789998888988742 3457999999884
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=98.08 E-value=0.0092 Score=59.09 Aligned_cols=193 Identities=14% Similarity=0.075 Sum_probs=109.0
Q ss_pred CcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCC
Q 005240 31 AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (706)
Q Consensus 31 ~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~ 110 (706)
.....+.++|||+ |+++. .....|.+++.+ ++...+..... ...+..+.++++|+. ++...
T Consensus 20 ~~p~~i~~d~~g~-l~v~~---------~~~~~v~~~~~~-~~~~~~~~~~~---~~~~~~i~~~~~g~l-~v~~~---- 80 (300)
T 2qc5_A 20 SGPYGITSSEDGK-VWFTQ---------HKANKISSLDQS-GRIKEFEVPTP---DAKVMCLIVSSLGDI-WFTEN---- 80 (300)
T ss_dssp CCEEEEEECTTSC-EEEEE---------TTTTEEEEECTT-SCEEEEECSST---TCCEEEEEECTTSCE-EEEET----
T ss_pred CCcceeeECCCCC-EEEEc---------CCCCeEEEECCC-CceEEEECCCC---CCcceeEEECCCCCE-EEEec----
Confidence 3567788999997 33332 234689999987 66555432111 012567788899974 44321
Q ss_pred CCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCCCceecCC--C-ceEeeeeeCCCCc
Q 005240 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGT--P-AVYTAVEPSPDQK 187 (706)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g~~~~lt~--~-~~~~~~~~SpDG~ 187 (706)
....|++++.+|+.+.+.. . ..+..++++|+|+
T Consensus 81 --------------------------------------------~~~~v~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~ 116 (300)
T 2qc5_A 81 --------------------------------------------GANKIGKLSKKGGFTEYPLPQPDSGPYGITEGLNGD 116 (300)
T ss_dssp --------------------------------------------TTTEEEEECTTSCEEEEECSSTTCCEEEEEECSTTC
T ss_pred --------------------------------------------CCCeEEEECCCCCeEEecCCCCCCCCccceECCCCC
Confidence 1156888887775443322 2 4577888999986
Q ss_pred EEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCC
Q 005240 188 YVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGD 267 (706)
Q Consensus 188 ~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~ 267 (706)
|++.... ...|++++.+ ++.+.+... ... ..+..+.+.++|+ |++.. ..
T Consensus 117 -l~v~~~~------------~~~i~~~~~~-g~~~~~~~~-~~~----------~~~~~i~~d~~g~--l~v~~-~~--- 165 (300)
T 2qc5_A 117 -IWFTQLN------------GDRIGKLTAD-GTIYEYDLP-NKG----------SYPAFITLGSDNA--LWFTE-NQ--- 165 (300)
T ss_dssp -EEEEETT------------TTEEEEECTT-SCEEEEECS-STT----------CCEEEEEECTTSS--EEEEE-TT---
T ss_pred -EEEEccC------------CCeEEEECCC-CCEEEccCC-CCC----------CCceeEEECCCCC--EEEEe-cC---
Confidence 4444432 1378889888 444433211 010 1234678888886 65442 11
Q ss_pred CccccCccceeeeecCCCCCCCCceEEee--cccccccceecCCCceEEEEeeccccceEEEEEcCC
Q 005240 268 ANVEVSPRDIIYTQPAEPAEGEKPEILHK--LDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPG 332 (706)
Q Consensus 268 ~~~~~~~~~~l~~~d~~~~~~~~~~~l~~--~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~ 332 (706)
...|++++. + ++...+.. .......+.+.++|. |++.. . ....|++++.+
T Consensus 166 -------~~~i~~~~~---~-g~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~-~--~~~~i~~~~~~ 217 (300)
T 2qc5_A 166 -------NNSIGRITN---T-GKLEEYPLPTNAAAPVGITSGNDGA-LWFVE-I--MGNKIGRITTT 217 (300)
T ss_dssp -------TTEEEEECT---T-CCEEEEECSSTTCCEEEEEECTTSS-EEEEE-T--TTTEEEEECTT
T ss_pred -------CCeEEEECC---C-CcEEEeeCCCCCCCcceEEECCCCC-EEEEc-c--CCCEEEEEcCC
Confidence 124777765 2 34443321 123455677888886 44432 1 23468999984
|
| >1rp1_A Pancreatic lipase related protein 1; hydrolase, lipid degradation; HET: NAG; 2.10A {Canis lupus familiaris} SCOP: b.12.1.2 c.69.1.19 PDB: 2ppl_A | Back alignment and structure |
|---|
Probab=98.05 E-value=7.4e-06 Score=86.74 Aligned_cols=85 Identities=11% Similarity=0.032 Sum_probs=60.1
Q ss_pred HHHHH-CCeEEEEcCCCCcCCCCCCCCc--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCC
Q 005240 549 LIFLA-RRFAVLAGPSIPIIGEGDKLPN--DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH 625 (706)
Q Consensus 549 ~~l~~-~G~~v~~~~~~~~~g~g~~~~~--~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~ 625 (706)
..|++ .+|.|+..+.++ .|..... ........+|+...+++|.++.-++.+++.|+||||||++|+.++.+.|+
T Consensus 93 ~~ll~~~~~~VI~vD~~g---~g~s~y~~~~~~~~~~a~~l~~ll~~L~~~~g~~~~~v~LVGhSlGg~vA~~~a~~~p~ 169 (450)
T 1rp1_A 93 KNMFKVEEVNCICVDWKK---GSQTSYTQAANNVRVVGAQVAQMLSMLSANYSYSPSQVQLIGHSLGAHVAGEAGSRTPG 169 (450)
T ss_dssp HHHTTTCCEEEEEEECHH---HHSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCGGGEEEEEETHHHHHHHHHHHTSTT
T ss_pred HHHHhcCCeEEEEEeCcc---ccCCcchHHHHHHHHHHHHHHHHHHHHHHhcCCChhhEEEEEECHhHHHHHHHHHhcCC
Confidence 33444 489999866653 3333211 11234456788888888865433566899999999999999999999998
Q ss_pred ceeEEEeccCCC
Q 005240 626 LFCCGIARSGSY 637 (706)
Q Consensus 626 ~~~a~v~~~~~~ 637 (706)
++.++...|..
T Consensus 170 -v~~iv~Ldpa~ 180 (450)
T 1rp1_A 170 -LGRITGLDPVE 180 (450)
T ss_dssp -CCEEEEESCCC
T ss_pred -cccccccCccc
Confidence 99988777653
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=98.04 E-value=0.001 Score=66.02 Aligned_cols=120 Identities=13% Similarity=0.184 Sum_probs=70.8
Q ss_pred ceEEEEccCCC-ceecCC--C-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCC
Q 005240 157 AQLVLGSLDGT-AKDFGT--P-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAED 232 (706)
Q Consensus 157 ~~l~~~~l~g~-~~~lt~--~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~ 232 (706)
..|++++.+|+ ...+.. . ..+..++++|||+ |+++... ...|++|+.++.....+... +..
T Consensus 142 ~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~------------~~~i~~~~~~g~~~~~~~~~-g~~- 206 (286)
T 1q7f_A 142 MRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQE-IFISDNR------------AHCVKVFNYEGQYLRQIGGE-GIT- 206 (286)
T ss_dssp TEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSE-EEEEEGG------------GTEEEEEETTCCEEEEESCT-TTS-
T ss_pred CEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCC-EEEEECC------------CCEEEEEcCCCCEEEEEccC-Ccc-
Confidence 57888887773 333321 2 4577899999997 5554432 24799999988766655322 110
Q ss_pred CCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeeccc--ccccceecCCC
Q 005240 233 IPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDL--RFRSVSWCDDS 310 (706)
Q Consensus 233 ~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~--~~~~~~wspDg 310 (706)
..+..+++++||+ |++.. ... ...|.+++. ++.....+..... ....++++|||
T Consensus 207 ---------~~p~~i~~d~~G~--l~v~~-~~~---------~~~i~~~~~---~g~~~~~~~~~~~~~~~~~i~~~~~g 262 (286)
T 1q7f_A 207 ---------NYPIGVGINSNGE--ILIAD-NHN---------NFNLTIFTQ---DGQLISALESKVKHAQCFDVALMDDG 262 (286)
T ss_dssp ---------CSEEEEEECTTCC--EEEEE-CSS---------SCEEEEECT---TSCEEEEEEESSCCSCEEEEEEETTT
T ss_pred ---------CCCcEEEECCCCC--EEEEe-CCC---------CEEEEEECC---CCCEEEEEcccCCCCcceeEEECCCC
Confidence 1234778999985 55442 111 014778876 4444444443222 24578899999
Q ss_pred ceEEEE
Q 005240 311 LALVNE 316 (706)
Q Consensus 311 ~~l~~~ 316 (706)
+ |+++
T Consensus 263 ~-l~vs 267 (286)
T 1q7f_A 263 S-VVLA 267 (286)
T ss_dssp E-EEEE
T ss_pred c-EEEE
Confidence 7 4444
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=0.00045 Score=76.74 Aligned_cols=202 Identities=15% Similarity=0.110 Sum_probs=124.4
Q ss_pred CCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCce-eecccCCCccccccccceEEecCCcEEEEEecCC
Q 005240 30 GAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-KPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSS 108 (706)
Q Consensus 30 ~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~-~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~ 108 (706)
......+.|+|++.+|+++. -....|+.+++++... ..+.... +. .+..++..+.++.||++-.
T Consensus 39 ~~~~~~ld~~~~~~~ly~sD---------~~~~~I~r~~~~g~~~~~~v~~~~---~~-~P~GlAvD~~~~~ly~~d~-- 103 (619)
T 3s94_A 39 LEDAAAVDFVFSHGLIYWSD---------VSEEAIKRTEFNKTESVQNVVVSG---LL-SPDGLACDWLGEKLYWTDS-- 103 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEE---------TTTTEEEEEEC-----CEEEECSS---CS-CEEEEEEETTTTEEEEEET--
T ss_pred CCceEEEEEEeCCCEEEEEE---------CCCCeEEEEEccCCCceEEEEeCC---CC-CcCeEEEEecCCEEEEEeC--
Confidence 33566788999999997763 3346899999887632 2222111 11 1567888888888887631
Q ss_pred CCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCC-CceecC-CC-ceEeeeeeCCC
Q 005240 109 RRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TAKDFG-TP-AVYTAVEPSPD 185 (706)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g-~~~~lt-~~-~~~~~~~~SpD 185 (706)
....|.+++++| ..+.|. .. .....+++.|.
T Consensus 104 ----------------------------------------------~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~ 137 (619)
T 3s94_A 104 ----------------------------------------------ETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPS 137 (619)
T ss_dssp ----------------------------------------------TTTEEEEEETTSCSCEEEECSSCSCCCCEEEETT
T ss_pred ----------------------------------------------CCCEEEEEECCCCCEEEEEeCCCCCCceEEEecC
Confidence 126899999988 334443 23 56778999999
Q ss_pred CcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccC
Q 005240 186 QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDR 265 (706)
Q Consensus 186 G~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~ 265 (706)
+.+|+++.... ...|++.+++|...+.+..... ..+..++.+++++. |||+...
T Consensus 138 ~g~ly~tD~g~-----------~~~I~r~~~dG~~~~~l~~~~~------------~~P~Glald~~~~~-LY~aD~~-- 191 (619)
T 3s94_A 138 SGFMYWTDWGE-----------VPKIERAGMDGSSRFIIINSEI------------YWPNGLTLDYEEQK-LYWADAK-- 191 (619)
T ss_dssp TTEEEEEECSS-----------SCEEEEEETTSCSCEEEECSSC------------SSEEEEEEETTTTE-EEEEETT--
T ss_pred CCeEEEeccCC-----------CCEEEEEECCCCceEEEEeCCC------------CCCcEEEEEccCCE-EEEEeCC--
Confidence 88998886432 2479999999887777654321 12347889998877 8887321
Q ss_pred CCCccccCccceeeeecCCCCCCCCceEEee-cccccccceecCCCceEEEEeeccccceEEEEEcCCCCC
Q 005240 266 GDANVEVSPRDIIYTQPAEPAEGEKPEILHK-LDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKD 335 (706)
Q Consensus 266 ~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~-~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~ 335 (706)
.+.|+.++. ++...+.+.. .......+++..| .|+++.+ ....|+++|..+++
T Consensus 192 ---------~~~I~~~~~---dG~~~~~~~~~~~~~P~gi~~~~~--~ly~td~---~~~~V~~~d~~tg~ 245 (619)
T 3s94_A 192 ---------LNFIHKSNL---DGTNRQAVVKGSLPHPFALTLFED--ILYWTDW---STHSILACNKYTGE 245 (619)
T ss_dssp ---------TCCEEEESS---SCCEEC---------CCCEEESSS--EEEEECT---TTCSEEEEESSSCC
T ss_pred ---------CCeEEEecC---CCCccEEEEeCCCCCceEEEEeCC--EEEEecC---CCCEEEEEECCCCc
Confidence 124888888 5655555543 2233345566555 6776543 34468999987753
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=97.95 E-value=0.0016 Score=66.78 Aligned_cols=235 Identities=9% Similarity=0.024 Sum_probs=119.9
Q ss_pred CCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccC---CCccccccccceEEe
Q 005240 19 GPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFES---PDICLNAVFGSFVWV 95 (706)
Q Consensus 19 g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~---~~~~~~~~~~~~~wS 95 (706)
|+.+.+.... .....++++|||+.++-.... . .+...||.++ .++.+++... ....+. .+..++++
T Consensus 7 g~~~~v~~~~--~~p~~va~~~~g~~~v~~~~~----~--~~~~~l~~~~--~g~~~~~p~~~~~~~~~~~-~p~gv~~d 75 (343)
T 2qe8_A 7 DRLEVVAELS--LAPGNITLTPDGRLFLSLHQF----Y--QPEMQVAELT--QDGLIPFPPQSGNAIITFD-TVLGIKSD 75 (343)
T ss_dssp -CCEEEEEES--SCEEEEEECTTSCEEEEECGG----G--CCSCSEEEEE--TTEEEESCCCCSSCCCCCS-CEEEEEEC
T ss_pred ceeEEEEEcC--CCcceEEECCCCCEEEEeCCC----C--CCceEEEEEC--CCCeecCCCcccCccccee-EeeEEEEc
Confidence 4555565433 357789999999754332111 0 1225899888 5555544211 100111 25577899
Q ss_pred cCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCC-ceecCC
Q 005240 96 NNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGT 173 (706)
Q Consensus 96 pDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~-~~~lt~ 173 (706)
++|+ |++.-.. ... .....|+++|+ +|+ .+.+..
T Consensus 76 ~~g~-L~v~D~g-~~~------------------------------------------~~~~~i~~~d~~tg~~~~~~~~ 111 (343)
T 2qe8_A 76 GNGI-VWMLDNG-NQS------------------------------------------KSVPKLVAWDTLNNQLSRVIYL 111 (343)
T ss_dssp SSSE-EEEEECH-HHH------------------------------------------TSCCEEEEEETTTTEEEEEEEC
T ss_pred CCCc-EEEEcCC-CCc------------------------------------------CCCCeEEEEECCCCeEEEEEEC
Confidence 9987 4443110 000 01257888888 564 333321
Q ss_pred C-------ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCC-CCCCCC--cccCc----
Q 005240 174 P-------AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLP-PAEDIP--VCYNS---- 239 (706)
Q Consensus 174 ~-------~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~~~~~p--~~~~~---- 239 (706)
. .....++++|++..++++...... ...|+++++++++..++.... .....+ .....
T Consensus 112 ~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~---------~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~ 182 (343)
T 2qe8_A 112 PPPITLSNSFVNDLAVDLIHNFVYISDPAPDD---------KAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQ 182 (343)
T ss_dssp CTTTSCTTCCCCEEEEETTTTEEEEEECCSGG---------GCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECB
T ss_pred ChhhcccccccceEEEecCCCEEEEEcCccCC---------CCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEE
Confidence 1 234688899987787766541100 247999999866555543221 100000 00000
Q ss_pred ----------cCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCc--e------EEeeccccc
Q 005240 240 ----------VREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP--E------ILHKLDLRF 301 (706)
Q Consensus 240 ----------~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~--~------~l~~~~~~~ 301 (706)
...+...++|||||+. ||+.. ..+ ..||.++.+.+..+.. . .........
T Consensus 183 ~~~~~g~~~~~~~~~~gia~s~dg~~-ly~~~-~~~----------~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~p 250 (343)
T 2qe8_A 183 IGQPDGTVIRPHLGVNGIVLDAENEW-LYLSP-MHS----------TSMYRIKSADLSNLQLTDAELGSKIERYSEKPIC 250 (343)
T ss_dssp EECTTSCEECCCCCEEEEEECTTSCE-EEEEE-SSC----------SEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSC
T ss_pred eccCCCceeceecccceeEeccCCCE-EEEEe-CCC----------CeEEEEEHHHhcCCCCChhhhhcceEecccCCCC
Confidence 0023346899999987 77653 211 1366665311011110 0 111223355
Q ss_pred ccceecCCCceEEEEeeccccceEEEEEcCCC
Q 005240 302 RSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (706)
Q Consensus 302 ~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~ 333 (706)
..+++++||. |+++. . ....|+++|.++
T Consensus 251 dgia~d~~G~-l~va~-~--~~~~V~~~d~~~ 278 (343)
T 2qe8_A 251 DGISIDKDHN-IYVGD-L--AHSAIGVITSAD 278 (343)
T ss_dssp SCEEECTTCC-EEEEE-G--GGTEEEEEETTT
T ss_pred ceEEECCCCC-EEEEc-c--CCCeEEEEECCC
Confidence 6788999986 44332 2 234699999843
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=97.93 E-value=0.0014 Score=64.74 Aligned_cols=80 Identities=11% Similarity=-0.046 Sum_probs=49.4
Q ss_pred cceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCcc
Q 005240 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~ 84 (706)
..|++.|.++ |+..--...........+.++|||+.|+ .. ...|+.+|.++....++......
T Consensus 15 ~~v~~~d~~t----G~~~w~~~~~~~~~~~~~~~~pdG~ilv-s~-----------~~~V~~~d~~G~~~W~~~~~~~~- 77 (276)
T 3no2_A 15 NKIAIINKDT----KEIVWEYPLEKGWECNSVAATKAGEILF-SY-----------SKGAKMITRDGRELWNIAAPAGC- 77 (276)
T ss_dssp SEEEEEETTT----TEEEEEEECCTTCCCCEEEECTTSCEEE-EC-----------BSEEEEECTTSCEEEEEECCTTC-
T ss_pred CEEEEEECCC----CeEEEEeCCCccCCCcCeEECCCCCEEE-eC-----------CCCEEEECCCCCEEEEEcCCCCc-
Confidence 4577777755 6554332222213577889999998776 22 14688899855445555422111
Q ss_pred ccccccceEEecCCcEEEEE
Q 005240 85 LNAVFGSFVWVNNSTLLIFT 104 (706)
Q Consensus 85 ~~~~~~~~~wSpDg~~l~~~ 104 (706)
.+....++|||+.|+..
T Consensus 78 ---~~~~~~~~~dG~~lv~~ 94 (276)
T 3no2_A 78 ---EMQTARILPDGNALVAW 94 (276)
T ss_dssp ---EEEEEEECTTSCEEEEE
T ss_pred ---cccccEECCCCCEEEEe
Confidence 25567889999987754
|
| >2dst_A Hypothetical protein TTHA1544; conserved hypothetical protein, structural genomics, NPPSFA; 2.00A {Thermus thermophilus} SCOP: c.69.1.39 | Back alignment and structure |
|---|
Probab=97.92 E-value=5.9e-05 Score=65.33 Aligned_cols=64 Identities=16% Similarity=-0.006 Sum_probs=44.3
Q ss_pred HCCeEEEEcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCC
Q 005240 553 ARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH 625 (706)
Q Consensus 553 ~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~ 625 (706)
+.+|.|+..+.+ |+|.+...........+|+.+.++.+ +.+++.++|||+||.+++.++.++|.
T Consensus 40 ~~~~~v~~~d~~---G~G~s~~~~~~~~~~~~~~~~~~~~~------~~~~~~lvG~S~Gg~~a~~~a~~~p~ 103 (131)
T 2dst_A 40 PEGYAFYLLDLP---GYGRTEGPRMAPEELAHFVAGFAVMM------NLGAPWVLLRGLGLALGPHLEALGLR 103 (131)
T ss_dssp CTTSEEEEECCT---TSTTCCCCCCCHHHHHHHHHHHHHHT------TCCSCEEEECGGGGGGHHHHHHTTCC
T ss_pred hCCcEEEEECCC---CCCCCCCCCCCHHHHHHHHHHHHHHc------CCCccEEEEEChHHHHHHHHHhcCCc
Confidence 345999986665 45554332211455566666655544 34689999999999999999999985
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.91 E-value=0.0014 Score=63.40 Aligned_cols=210 Identities=10% Similarity=0.079 Sum_probs=114.9
Q ss_pred eeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEE
Q 005240 22 KEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLL 101 (706)
Q Consensus 22 ~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l 101 (706)
++|.++.. ..+..+|.||++.|+.+. +....|+.+|+.+...+++...... ....+++.++|++
T Consensus 20 ~~l~g~~~--~lSGla~~~~~~~L~aV~---------d~~~~I~~ld~~g~v~~~i~l~g~~----D~EGIa~~~~g~~- 83 (255)
T 3qqz_A 20 KEIAGITN--NISSLTWSAQSNTLFSTI---------NKPAAIVEMTTNGDLIRTIPLDFVK----DLETIEYIGDNQF- 83 (255)
T ss_dssp EECTTCCS--CEEEEEEETTTTEEEEEE---------ETTEEEEEEETTCCEEEEEECSSCS----SEEEEEECSTTEE-
T ss_pred eECCCccc--CcceeEEeCCCCEEEEEE---------CCCCeEEEEeCCCCEEEEEecCCCC----ChHHeEEeCCCEE-
Confidence 34443333 488999999999986655 3357899999985444444322211 1667889888864
Q ss_pred EEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccC--CCc---eecC----
Q 005240 102 IFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD--GTA---KDFG---- 172 (706)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~--g~~---~~lt---- 172 (706)
++.. + + ..+|++++++ +.. ..+.
T Consensus 84 ~vs~-E-~----------------------------------------------~~~l~~~~v~~~~~i~~~~~~~~~~~ 115 (255)
T 3qqz_A 84 VISD-E-R----------------------------------------------DYAIYVISLTPNSEVKILKKIKIPLQ 115 (255)
T ss_dssp EEEE-T-T----------------------------------------------TTEEEEEEECTTCCEEEEEEEECCCS
T ss_pred EEEE-C-C----------------------------------------------CCcEEEEEcCCCCeeeeeeeeccccc
Confidence 3332 1 1 1345555542 221 1111
Q ss_pred --C-CceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEe--cCCCeeEEcccCCCCCCCCcccCccCCCCcce
Q 005240 173 --T-PAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWT--TDGKLVRELCDLPPAEDIPVCYNSVREGMRSI 247 (706)
Q Consensus 173 --~-~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~ 247 (706)
. ......++|+|++++|+....+. +..|+.++ +.+...+.+.......... -.....+
T Consensus 116 ~~~~N~g~EGLA~d~~~~~L~va~E~~-----------p~~i~~~~g~~~~~~l~i~~~~~~~~~~~------~~d~S~l 178 (255)
T 3qqz_A 116 ESPTNCGFEGLAYSRQDHTFWFFKEKN-----------PIEVYKVNGLLSSNELHISKDKALQRQFT------LDDVSGA 178 (255)
T ss_dssp SCCCSSCCEEEEEETTTTEEEEEEESS-----------SEEEEEEESTTCSSCCEEEECHHHHHTCC------SSCCCEE
T ss_pred cccccCCcceEEEeCCCCEEEEEECcC-----------CceEEEEcccccCCceeeecchhhccccc------cCCceeE
Confidence 1 13568999999999998866554 23677776 1122222211100000000 0113477
Q ss_pred eeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecc----------cccccceecCCCceEEEEe
Q 005240 248 SWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLD----------LRFRSVSWCDDSLALVNET 317 (706)
Q Consensus 248 ~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~----------~~~~~~~wspDg~~l~~~~ 317 (706)
++.|.... |+.++..+ ..|..+|. + |++....... .+...+++.++|. |+.++
T Consensus 179 ~~dp~tg~-lliLS~~s-----------~~L~~~d~---~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvs 241 (255)
T 3qqz_A 179 EFNQQKNT-LLVLSHES-----------RALQEVTL---V-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVS 241 (255)
T ss_dssp EEETTTTE-EEEEETTT-----------TEEEEECT---T-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEE
T ss_pred EEcCCCCe-EEEEECCC-----------CeEEEEcC---C-CCEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEc
Confidence 88888766 77665322 24777776 4 4444433222 2446778999996 55443
Q ss_pred eccccceEEEEEcCCC
Q 005240 318 WYKTSQTRTWLVCPGS 333 (706)
Q Consensus 318 ~~~~~~~~l~~~d~~~ 333 (706)
+. +.+|++....
T Consensus 242 -E~---n~~y~f~~~~ 253 (255)
T 3qqz_A 242 -EP---NRFYRFTPQS 253 (255)
T ss_dssp -TT---TEEEEEEC--
T ss_pred -CC---ceEEEEEecC
Confidence 32 3688886543
|
| >2zyr_A Lipase, putative; fatty acid, hydrolase; HET: 1PE; 1.77A {Archaeoglobus fulgidus} PDB: 2zys_A* 2zyi_A* 2zyh_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=1.4e-05 Score=84.33 Aligned_cols=110 Identities=16% Similarity=0.227 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCC---CceeEEEeccCCCCCCCC---Ccc--chHHHHH
Q 005240 581 QLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAP---HLFCCGIARSGSYNKTLT---PFG--FQAERFF 652 (706)
Q Consensus 581 ~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p---~~~~a~v~~~~~~d~~~~---~~~--~~~~~~~ 652 (706)
..++++.+.++.+.++. ..+++.++||||||.+++.++.++| ++++++|+.++.++..+. +.. +......
T Consensus 109 ~~~~dla~~L~~ll~~l--g~~kV~LVGHSmGG~IAl~~A~~~Pe~~~~V~~LVlIapp~~~d~p~g~~~L~ilG~~d~~ 186 (484)
T 2zyr_A 109 ETFSRLDRVIDEALAES--GADKVDLVGHSMGTFFLVRYVNSSPERAAKVAHLILLDGVWGVDAPEGIPTLAVFGNPKAL 186 (484)
T ss_dssp HHHHHHHHHHHHHHHHH--CCSCEEEEEETHHHHHHHHHHHTCHHHHHTEEEEEEESCCCSEECCTTSCEEEEEECGGGS
T ss_pred hhHHHHHHHHHHHHHHh--CCCCEEEEEECHHHHHHHHHHHHCccchhhhCEEEEECCccccccCcCCHHHHHhCCCCcC
Confidence 44667777777776652 2378999999999999999999997 489999999987653211 000 0000000
Q ss_pred HHHH--hCCC--cEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHH
Q 005240 653 DALK--GHGA--LSRLVLLPFEHHVYAARENVMHVIWETDRWLQKY 694 (706)
Q Consensus 653 ~~l~--~~~~--~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~~~~ 694 (706)
..+. .... ..+.+++++.+|..... ..+..+.+++||...
T Consensus 187 p~V~~pss~L~~ga~~v~i~~a~H~~ll~--dp~v~~~Vl~fL~~~ 230 (484)
T 2zyr_A 187 PALGLPEEKVVYNATNVYFNNMTHVQLCT--SPETFAVMFEFINGY 230 (484)
T ss_dssp CCSSCCSSCCEETSEEEEETTCCHHHHHH--CHHHHHHHHHHHHSS
T ss_pred CcccChhHhcCCCceEEEECCCCcccccc--CHHHHHHHHHHhccc
Confidence 0000 0001 23566789999975421 235667788888753
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=0.0016 Score=63.46 Aligned_cols=211 Identities=8% Similarity=-0.052 Sum_probs=110.7
Q ss_pred eEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCc
Q 005240 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPS 255 (706)
Q Consensus 176 ~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~ 255 (706)
....+.|+||| +|+.++.... .+.|.++|+.++++..-..... +.....+.++++.
T Consensus 22 f~~Gl~~~~dg-~Lyvstg~~~----------~s~v~~iD~~tg~v~~~i~l~~-------------~~fgeGi~~~g~~ 77 (266)
T 2iwa_A 22 FTQGLVYAEND-TLFESTGLYG----------RSSVRQVALQTGKVENIHKMDD-------------SYFGEGLTLLNEK 77 (266)
T ss_dssp CEEEEEECSTT-EEEEEECSTT----------TCEEEEEETTTCCEEEEEECCT-------------TCCEEEEEEETTE
T ss_pred CcccEEEeCCC-eEEEECCCCC----------CCEEEEEECCCCCEEEEEecCC-------------CcceEEEEEeCCE
Confidence 34688999996 6766553211 3589999999776544322211 1112234445665
Q ss_pred eEEEEEeccCCCCccccCccceeeeecCCCCCCCCce-EEeecccccccceecCCCceEEEEeeccccceEEEEEcCCCC
Q 005240 256 TLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPE-ILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK 334 (706)
Q Consensus 256 ~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~-~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~ 334 (706)
||.... ..+.++++|. ++.+.. ++.. . .......++||++++.+. +...|+.+|+++.
T Consensus 78 -lyv~t~-----------~~~~v~viD~---~t~~v~~~i~~-g-~~~g~glt~Dg~~l~vs~----gs~~l~viD~~t~ 136 (266)
T 2iwa_A 78 -LYQVVW-----------LKNIGFIYDR---RTLSNIKNFTH-Q-MKDGWGLATDGKILYGSD----GTSILYEIDPHTF 136 (266)
T ss_dssp -EEEEET-----------TCSEEEEEET---TTTEEEEEEEC-C-SSSCCEEEECSSSEEEEC----SSSEEEEECTTTC
T ss_pred -EEEEEe-----------cCCEEEEEEC---CCCcEEEEEEC-C-CCCeEEEEECCCEEEEEC----CCCeEEEEECCCC
Confidence 765531 2235888988 444332 2322 2 123345778999888642 2457999999985
Q ss_pred CCCceee-ecCcccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeeecc
Q 005240 335 DVAPRVL-FDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWES 413 (706)
Q Consensus 335 ~~~~~~l-~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~ 413 (706)
+. ...+ ....-..+ . ...++.+. || .+++.. .....|..+|+++|+....++.
T Consensus 137 ~v-~~~I~Vg~~~~p~-~--~~nele~~-dg-~lyvn~--------------------~~~~~V~vID~~tg~V~~~I~~ 190 (266)
T 2iwa_A 137 KL-IKKHNVKYNGHRV-I--RLNELEYI-NG-EVWANI--------------------WQTDCIARISAKDGTLLGWILL 190 (266)
T ss_dssp CE-EEEEECEETTEEC-C--CEEEEEEE-TT-EEEEEE--------------------TTSSEEEEEETTTCCEEEEEEC
T ss_pred cE-EEEEEECCCCccc-c--cceeEEEE-CC-EEEEec--------------------CCCCeEEEEECCCCcEEEEEEC
Confidence 32 2222 11100000 0 00123334 44 444332 1122588999999998776655
Q ss_pred cchhhhhhhhhhcc---CCCceecccCCCEEEEEEecCCCCcEEEEEECCC
Q 005240 414 NREKYFETAVALVF---GQGEEDINLNQLKILTSKESKTEITQYHILSWPL 461 (706)
Q Consensus 414 ~~~~~~~~~~~~~~---~~~~~~~s~Dg~~l~~~~~~~~~p~~v~~~~~~~ 461 (706)
.+- ..+.+..... .-....++||+++++.+.... +.++.+++..
T Consensus 191 ~g~-~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~---~~v~~i~l~~ 237 (266)
T 2iwa_A 191 PNL-RKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLW---PKLFEIKLHL 237 (266)
T ss_dssp HHH-HHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTC---SEEEEEEEEE
T ss_pred CCc-ccccccccccccCceEEEEEcCCCCEEEEECCCC---CeEEEEEEec
Confidence 321 0000000000 012468999999888765433 5577766543
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00074 Score=65.01 Aligned_cols=205 Identities=11% Similarity=0.143 Sum_probs=117.2
Q ss_pred eeeecCCCCCc--ccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCc
Q 005240 22 KEVHGYPDGAK--INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNST 99 (706)
Q Consensus 22 ~~i~~~~~~~~--~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~ 99 (706)
+-+..+|.+.. .....|+ || .|+.+... .+...|.++|+++|+..+-...+.. +-.-...++|+
T Consensus 32 ~vv~~~phd~~~ftqGL~~~-~~-~LyestG~-------~g~S~v~~vD~~Tgkv~~~~~l~~~-----~FgeGit~~g~ 97 (262)
T 3nol_A 32 QIVHSYPHDTKAFTEGFFYR-NG-YFYESTGL-------NGRSSIRKVDIESGKTLQQIELGKR-----YFGEGISDWKD 97 (262)
T ss_dssp EEEEEEECCTTCEEEEEEEE-TT-EEEEEEEE-------TTEEEEEEECTTTCCEEEEEECCTT-----CCEEEEEEETT
T ss_pred EEEEEecCCCCcccceEEEE-CC-EEEEECCC-------CCCceEEEEECCCCcEEEEEecCCc-----cceeEEEEeCC
Confidence 33455565543 3677888 55 55443321 4567999999999987554333321 22223456777
Q ss_pred EEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CC-CceecCCCceE
Q 005240 100 LLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTPAVY 177 (706)
Q Consensus 100 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g-~~~~lt~~~~~ 177 (706)
.|+.... ....++++|. +. ....+....
T Consensus 98 ~ly~ltw------------------------------------------------~~~~v~v~D~~t~~~~~ti~~~~-- 127 (262)
T 3nol_A 98 KIVGLTW------------------------------------------------KNGLGFVWNIRNLRQVRSFNYDG-- 127 (262)
T ss_dssp EEEEEES------------------------------------------------SSSEEEEEETTTCCEEEEEECSS--
T ss_pred EEEEEEe------------------------------------------------eCCEEEEEECccCcEEEEEECCC--
Confidence 8877632 2268999998 55 344444332
Q ss_pred eeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCe-eEEcccCCCCCCCCcccCccCCCCcceeeecCCCce
Q 005240 178 TAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL-VRELCDLPPAEDIPVCYNSVREGMRSISWRADKPST 256 (706)
Q Consensus 178 ~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~ 256 (706)
....+++||++|+.+. . ...|+.+|..+.+ .+++.-... ..|. .....+.|. ||+
T Consensus 128 eG~glt~dg~~L~~Sd-G------------s~~i~~iDp~T~~v~~~I~V~~~--g~~~------~~lNELe~~-~G~-- 183 (262)
T 3nol_A 128 EGWGLTHNDQYLIMSD-G------------TPVLRFLDPESLTPVRTITVTAH--GEEL------PELNELEWV-DGE-- 183 (262)
T ss_dssp CCCCEEECSSCEEECC-S------------SSEEEEECTTTCSEEEEEECEET--TEEC------CCEEEEEEE-TTE--
T ss_pred CceEEecCCCEEEEEC-C------------CCeEEEEcCCCCeEEEEEEeccC--Cccc------cccceeEEE-CCE--
Confidence 2345668999887654 2 2479999998644 334332210 0110 001135565 553
Q ss_pred EEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecc-------------cccccceecCCCceEEEEeeccccc
Q 005240 257 LYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLD-------------LRFRSVSWCDDSLALVNETWYKTSQ 323 (706)
Q Consensus 257 l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~-------------~~~~~~~wspDg~~l~~~~~~~~~~ 323 (706)
|| +.. +..+.|.++|. ++|++....... .....++|+|+++.|+.+.- .+
T Consensus 184 ly-an~----------w~~~~I~vIDp---~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK---~W 246 (262)
T 3nol_A 184 IF-ANV----------WQTNKIVRIDP---ETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK---LW 246 (262)
T ss_dssp EE-EEE----------TTSSEEEEECT---TTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET---TC
T ss_pred EE-EEE----------ccCCeEEEEEC---CCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC---CC
Confidence 55 321 23346888888 677765433221 13467899999988887642 56
Q ss_pred eEEEEEcC
Q 005240 324 TRTWLVCP 331 (706)
Q Consensus 324 ~~l~~~d~ 331 (706)
.+||.+.+
T Consensus 247 p~~~ev~~ 254 (262)
T 3nol_A 247 PKVFEITL 254 (262)
T ss_dssp SEEEEEEE
T ss_pred CceEEEEE
Confidence 77887754
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00059 Score=68.70 Aligned_cols=62 Identities=11% Similarity=0.044 Sum_probs=36.0
Q ss_pred ccceeeCC---CCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEe
Q 005240 33 INFVSWSP---DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTI 105 (706)
Q Consensus 33 ~~~~~~SP---DG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~ 105 (706)
+...+||| ||+.||-.+ ....|.++|+++|+..+......... ..+...+|||||++++..+
T Consensus 181 v~~l~fs~~~g~~~~LaSgS----------~D~TIkIWDl~TGk~l~tL~g~~~~v-~~v~~vafSpdG~~lvs~s 245 (356)
T 2w18_A 181 ETILTFAEVQGMQEALLGTT----------IMNNIVIWNLKTGQLLKKMHIDDSYQ-ASVCHKAYSEMGLLFIVLS 245 (356)
T ss_dssp SCEEEEEEEETSTTEEEEEE----------TTSEEEEEETTTCCEEEEEECCC----CCCEEEEEEETTEEEEEEC
T ss_pred eeeEEeeccCCCCceEEEec----------CCCcEEEEECCCCcEEEEEcCCCcce-eeeEEEEECCCCCEEEEec
Confidence 44555566 445554433 34678888999988644432211101 1144568999999887654
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=97.82 E-value=0.0026 Score=67.49 Aligned_cols=193 Identities=16% Similarity=0.166 Sum_probs=109.4
Q ss_pred cceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCcc
Q 005240 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~ 84 (706)
..|.+.++.. ++....-. .....+..+.| ||+.|+.... ...|.++|+.+++..........
T Consensus 153 g~i~iwd~~~----~~~~~~~~-~h~~~v~~l~~--~~~~l~sg~~----------dg~i~vwd~~~~~~~~~~~~h~~- 214 (435)
T 1p22_A 153 NTIKIWDKNT----LECKRILT-GHTGSVLCLQY--DERVIITGSS----------DSTVRVWDVNTGEMLNTLIHHCE- 214 (435)
T ss_dssp SCEEEEESSS----CCEEEEEC-CCSSCEEEEEC--CSSEEEEEET----------TSCEEEEESSSCCEEEEECCCCS-
T ss_pred CeEEEEeCCC----CeEEEEEc-CCCCcEEEEEE--CCCEEEEEcC----------CCeEEEEECCCCcEEEEEcCCCC-
Confidence 3578888866 55444321 12224555665 8888877542 35677888888876544322221
Q ss_pred ccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc
Q 005240 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (706)
Q Consensus 85 ~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l 164 (706)
.+..+.|++ ..|+..+. .+.|.++++
T Consensus 215 ---~v~~l~~~~--~~l~s~s~-------------------------------------------------dg~i~vwd~ 240 (435)
T 1p22_A 215 ---AVLHLRFNN--GMMVTCSK-------------------------------------------------DRSIAVWDM 240 (435)
T ss_dssp ---CEEEEECCT--TEEEEEET-------------------------------------------------TSCEEEEEC
T ss_pred ---cEEEEEEcC--CEEEEeeC-------------------------------------------------CCcEEEEeC
Confidence 256677764 45555432 156777787
Q ss_pred -CCC-c---eecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCee-EEcccCCCCCCCCccc
Q 005240 165 -DGT-A---KDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIPVCY 237 (706)
Q Consensus 165 -~g~-~---~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~l~~~~~~~~~p~~~ 237 (706)
+++ . ..+... ..+..+.| +|++|+..+.+ ..|.+||+.+++. ..+....
T Consensus 241 ~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~d-------------g~i~vwd~~~~~~~~~~~~~~--------- 296 (435)
T 1p22_A 241 ASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGD-------------RTIKVWNTSTCEFVRTLNGHK--------- 296 (435)
T ss_dssp SSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETT-------------SEEEEEETTTCCEEEEEECCS---------
T ss_pred CCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCC-------------CeEEEEECCcCcEEEEEcCCC---------
Confidence 342 2 223333 56667777 88888766543 3799999986543 3333221
Q ss_pred CccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCc-eEEeecccccccceecCCCceEEEE
Q 005240 238 NSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP-EILHKLDLRFRSVSWCDDSLALVNE 316 (706)
Q Consensus 238 ~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~-~~l~~~~~~~~~~~wspDg~~l~~~ 316 (706)
..+..+.| +++. |+ .... .+.|.++|+ .+++. ..+..+...+..+.| |+..|+..
T Consensus 297 ----~~v~~~~~--~~~~-l~-~g~~-----------dg~i~iwd~---~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg 352 (435)
T 1p22_A 297 ----RGIACLQY--RDRL-VV-SGSS-----------DNTIRLWDI---ECGACLRVLEGHEELVRCIRF--DNKRIVSG 352 (435)
T ss_dssp ----SCEEEEEE--ETTE-EE-EEET-----------TSCEEEEET---TTCCEEEEECCCSSCEEEEEC--CSSEEEEE
T ss_pred ----CcEEEEEe--CCCE-EE-EEeC-----------CCeEEEEEC---CCCCEEEEEeCCcCcEEEEEe--cCCEEEEE
Confidence 11224455 4443 33 2211 124788888 44544 344455666777778 77777776
Q ss_pred e
Q 005240 317 T 317 (706)
Q Consensus 317 ~ 317 (706)
+
T Consensus 353 ~ 353 (435)
T 1p22_A 353 A 353 (435)
T ss_dssp E
T ss_pred e
Confidence 5
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=0.011 Score=58.52 Aligned_cols=193 Identities=13% Similarity=0.078 Sum_probs=107.4
Q ss_pred CcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCC
Q 005240 31 AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (706)
Q Consensus 31 ~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~ 110 (706)
.....+.++|||+.. ++. .....|++++.+ ++.+.+..... ...+..+.++|||+. ++...
T Consensus 57 ~~~~~i~~~~~g~l~-v~~---------~~~~~i~~~~~~-g~~~~~~~~~~---~~~~~~i~~~~~g~l-~v~~~---- 117 (299)
T 2z2n_A 57 AKVMCLTISSDGEVW-FTE---------NAANKIGRITKK-GIIKEYTLPNP---DSAPYGITEGPNGDI-WFTEM---- 117 (299)
T ss_dssp CCEEEEEECTTSCEE-EEE---------TTTTEEEEECTT-SCEEEEECSST---TCCEEEEEECTTSCE-EEEET----
T ss_pred CceeeEEECCCCCEE-EeC---------CCCCeEEEECCC-CcEEEEeCCCc---CCCceeeEECCCCCE-EEEec----
Confidence 356678889998733 332 234578888876 44444431101 112556788888874 44321
Q ss_pred CCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCCCceecCC--C-ceEeeeeeCCCCc
Q 005240 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGT--P-AVYTAVEPSPDQK 187 (706)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g~~~~lt~--~-~~~~~~~~SpDG~ 187 (706)
....|++++.+|+...+.. . .....++++|||+
T Consensus 118 --------------------------------------------~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~ 153 (299)
T 2z2n_A 118 --------------------------------------------NGNRIGRITDDGKIREYELPNKGSYPSFITLGSDNA 153 (299)
T ss_dssp --------------------------------------------TTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSC
T ss_pred --------------------------------------------CCceEEEECCCCCEEEecCCCCCCCCceEEEcCCCC
Confidence 1157888888665444321 2 4577889999994
Q ss_pred EEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCC
Q 005240 188 YVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGD 267 (706)
Q Consensus 188 ~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~ 267 (706)
|++.... ...|++++. +++.+.+.... .. ..+..+.+.++|+ |++.. ..
T Consensus 154 -l~v~~~~------------~~~i~~~~~-~g~~~~~~~~~-~~----------~~~~~i~~~~~g~--l~v~~-~~--- 202 (299)
T 2z2n_A 154 -LWFTENQ------------NNAIGRITE-SGDITEFKIPT-PA----------SGPVGITKGNDDA--LWFVE-II--- 202 (299)
T ss_dssp -EEEEETT------------TTEEEEECT-TCCEEEEECSS-TT----------CCEEEEEECTTSS--EEEEE-TT---
T ss_pred -EEEEeCC------------CCEEEEEcC-CCcEEEeeCCC-CC----------CcceeEEECCCCC--EEEEc-cC---
Confidence 5554432 247889998 44444431111 00 1234678888876 65442 11
Q ss_pred CccccCccceeeeecCCCCCCCCceEEee--cccccccceecCCCceEEEEeeccccceEEEEEcCC
Q 005240 268 ANVEVSPRDIIYTQPAEPAEGEKPEILHK--LDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPG 332 (706)
Q Consensus 268 ~~~~~~~~~~l~~~d~~~~~~~~~~~l~~--~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~ 332 (706)
...|++++. . ++...+.. .......+.++++|. |++.. . ....|+++|++
T Consensus 203 -------~~~i~~~~~---~-g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~-~--~~~~i~~~d~~ 254 (299)
T 2z2n_A 203 -------GNKIGRITT---S-GEITEFKIPTPNARPHAITAGAGID-LWFTE-W--GANKIGRLTSN 254 (299)
T ss_dssp -------TTEEEEECT---T-CCEEEEECSSTTCCEEEEEECSTTC-EEEEE-T--TTTEEEEEETT
T ss_pred -------CceEEEECC---C-CcEEEEECCCCCCCceeEEECCCCC-EEEec-c--CCceEEEECCC
Confidence 124677765 2 34433321 224456778889987 44432 1 23468889884
|
| >1kez_A Erythronolide synthase; polyketide synthase, modular polyketide synthase, thioesterase, 6-DEB, TE, DEBS, alpha, beta-hydrolase; 2.80A {Saccharopolyspora erythraea} SCOP: c.69.1.22 PDB: 1mo2_A | Back alignment and structure |
|---|
Probab=97.78 E-value=9.2e-05 Score=74.54 Aligned_cols=77 Identities=22% Similarity=0.140 Sum_probs=52.0
Q ss_pred HCCeEEEEcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCC---CceeE
Q 005240 553 ARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAP---HLFCC 629 (706)
Q Consensus 553 ~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p---~~~~a 629 (706)
..+|.|+..+.+ |+|.+...........+|+... +.+. .+..++.++||||||.+++.++.+.| +++++
T Consensus 93 ~~~~~v~~~d~~---G~G~s~~~~~~~~~~a~~~~~~---l~~~--~~~~~~~LvGhS~GG~vA~~~A~~~p~~g~~v~~ 164 (300)
T 1kez_A 93 RGIAPVRAVPQP---GYEEGEPLPSSMAAVAAVQADA---VIRT--QGDKPFVVAGHSAGALMAYALATELLDRGHPPRG 164 (300)
T ss_dssp SSSCCBCCCCCT---TSSTTCCBCSSHHHHHHHHHHH---HHHH--CSSCCEEEECCTHHHHHHHHHHHHTTTTTCCCSE
T ss_pred CCCceEEEecCC---CCCCCCCCCCCHHHHHHHHHHH---HHHh--cCCCCEEEEEECHhHHHHHHHHHHHHhcCCCccE
Confidence 356888875443 5555433333344555554433 3332 23468999999999999999999987 48999
Q ss_pred EEeccCCC
Q 005240 630 GIARSGSY 637 (706)
Q Consensus 630 ~v~~~~~~ 637 (706)
+|..++..
T Consensus 165 lvl~~~~~ 172 (300)
T 1kez_A 165 VVLIDVYP 172 (300)
T ss_dssp EECBTCCC
T ss_pred EEEECCCC
Confidence 99988754
|
| >3ils_A PKS, aflatoxin biosynthesis polyketide synthase; A/B hydrolase, thioesterase, norsolorinic acid, P polyketide, acyltransferase; 1.70A {Aspergillus parasiticus} | Back alignment and structure |
|---|
Probab=97.78 E-value=9.3e-05 Score=72.99 Aligned_cols=100 Identities=12% Similarity=-0.004 Sum_probs=64.0
Q ss_pred ceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHH
Q 005240 513 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEE 592 (706)
Q Consensus 513 ~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~ 592 (706)
.|.||++||.+.. ...|. .+.. .+.+|.|+..+.+|. +............++|+.+.++.
T Consensus 21 ~~~lv~lhg~~~~-----------~~~~~----~~~~--l~~~~~v~~~d~~G~---~~~~~~~~~~~~~~~~~~~~i~~ 80 (265)
T 3ils_A 21 RKTLFMLPDGGGS-----------AFSYA----SLPR--LKSDTAVVGLNCPYA---RDPENMNCTHGAMIESFCNEIRR 80 (265)
T ss_dssp SEEEEEECCTTCC-----------GGGGT----TSCC--CSSSEEEEEEECTTT---TCGGGCCCCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCC-----------HHHHH----HHHh--cCCCCEEEEEECCCC---CCCCCCCCCHHHHHHHHHHHHHH
Confidence 4678889997421 11221 1223 367899988666542 22222222345556666666554
Q ss_pred HHHcCCCCCCcEEEEEechHHHHHHHHHH---hCCCceeEEEeccCCC
Q 005240 593 VVRRGVADPSRIAVGGHSYGAFMTAHLLA---HAPHLFCCGIARSGSY 637 (706)
Q Consensus 593 l~~~~~id~~~i~i~G~S~GG~~a~~~~~---~~p~~~~a~v~~~~~~ 637 (706)
+. ...++.++||||||.+++.++. ..|++++.++..++..
T Consensus 81 ~~-----~~~~~~l~GhS~Gg~ia~~~a~~l~~~~~~v~~lvl~~~~~ 123 (265)
T 3ils_A 81 RQ-----PRGPYHLGGWSSGGAFAYVVAEALVNQGEEVHSLIIIDAPI 123 (265)
T ss_dssp HC-----SSCCEEEEEETHHHHHHHHHHHHHHHTTCCEEEEEEESCCS
T ss_pred hC-----CCCCEEEEEECHhHHHHHHHHHHHHhCCCCceEEEEEcCCC
Confidence 41 2258999999999999999997 6778899988887643
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.0028 Score=64.91 Aligned_cols=68 Identities=10% Similarity=0.062 Sum_probs=37.9
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCce-eecccCCCc-cccccccceEEecCCcEEEEE
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-KPLFESPDI-CLNAVFGSFVWVNNSTLLIFT 104 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~-~~lt~~~~~-~~~~~~~~~~wSpDg~~l~~~ 104 (706)
.+..++++|||+ |+.+... ........|+++|+++++. +.+...... .....+..++++|++..+|+.
T Consensus 68 ~p~gv~~d~~g~-L~v~D~g----~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvt 137 (343)
T 2qe8_A 68 TVLGIKSDGNGI-VWMLDNG----NQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYIS 137 (343)
T ss_dssp CEEEEEECSSSE-EEEEECH----HHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEE
T ss_pred EeeEEEEcCCCc-EEEEcCC----CCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEE
Confidence 566789999986 5443210 0001246899999998874 333211110 001124678899876666655
|
| >3lp5_A Putative cell surface hydrolase; structural genom PSI2, MCSG, protein structure initiative, midwest center FO structural genomics; 2.00A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00013 Score=70.82 Aligned_cols=58 Identities=16% Similarity=0.145 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhC-----CCceeEEEeccCCCC
Q 005240 579 VEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHA-----PHLFCCGIARSGSYN 638 (706)
Q Consensus 579 ~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~-----p~~~~a~v~~~~~~d 638 (706)
+....+++..+++++.++.. -.++.++||||||.+++.++.++ |++++.+|..++.++
T Consensus 77 ~~~~a~~l~~~~~~l~~~~~--~~~~~lvGHSmGg~~a~~~~~~~~~~~~~~~v~~lv~l~~p~~ 139 (250)
T 3lp5_A 77 IDKQAVWLNTAFKALVKTYH--FNHFYALGHSNGGLIWTLFLERYLKESPKVHIDRLMTIASPYN 139 (250)
T ss_dssp HHHHHHHHHHHHHHHHTTSC--CSEEEEEEETHHHHHHHHHHHHTGGGSTTCEEEEEEEESCCTT
T ss_pred HHHHHHHHHHHHHHHHHHcC--CCCeEEEEECHhHHHHHHHHHHccccccchhhCEEEEECCCCC
Confidence 45678889999999977643 36899999999999999999877 678999999987665
|
| >1ei9_A Palmitoyl protein thioesterase 1; alpha/beta hydrolase, glycoprotein, hydrolase; HET: NDG NAG; 2.25A {Bos taurus} SCOP: c.69.1.13 PDB: 1eh5_A* 1exw_A* 3gro_A | Back alignment and structure |
|---|
Probab=97.69 E-value=6.2e-05 Score=74.78 Aligned_cols=86 Identities=13% Similarity=0.102 Sum_probs=53.2
Q ss_pred HHHHHHHC--CeEEEEcCCCCcCCCCCCCC-chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhC
Q 005240 547 SSLIFLAR--RFAVLAGPSIPIIGEGDKLP-NDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHA 623 (706)
Q Consensus 547 ~~~~l~~~--G~~v~~~~~~~~~g~g~~~~-~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~ 623 (706)
....|.+. |+.|+..+. |+|.+.. ...+......++..+++++.....+ .+++.++||||||.++..++.++
T Consensus 27 ~~~~L~~~~~g~~v~~~d~----G~g~s~~~~~~~~~~~~~~~~~~~~~l~~~~~l-~~~~~lvGhSmGG~ia~~~a~~~ 101 (279)
T 1ei9_A 27 IKKMVEKKIPGIHVLSLEI----GKTLREDVENSFFLNVNSQVTTVCQILAKDPKL-QQGYNAMGFSQGGQFLRAVAQRC 101 (279)
T ss_dssp HHHHHHHHSTTCCEEECCC----SSSHHHHHHHHHHSCHHHHHHHHHHHHHSCGGG-TTCEEEEEETTHHHHHHHHHHHC
T ss_pred HHHHHHHHCCCcEEEEEEe----CCCCccccccccccCHHHHHHHHHHHHHhhhhc-cCCEEEEEECHHHHHHHHHHHHc
Confidence 45566653 889988553 4443211 0111112223333444444332112 26899999999999999999999
Q ss_pred CCc-eeEEEeccCCC
Q 005240 624 PHL-FCCGIARSGSY 637 (706)
Q Consensus 624 p~~-~~a~v~~~~~~ 637 (706)
|+. ++.+|+.++..
T Consensus 102 ~~~~v~~lv~~~~p~ 116 (279)
T 1ei9_A 102 PSPPMVNLISVGGQH 116 (279)
T ss_dssp CSSCEEEEEEESCCT
T ss_pred CCcccceEEEecCcc
Confidence 984 99999887643
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=97.64 E-value=0.016 Score=58.13 Aligned_cols=60 Identities=15% Similarity=0.129 Sum_probs=37.9
Q ss_pred ceEEEEccCCCceec-CCCceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccC
Q 005240 157 AQLVLGSLDGTAKDF-GTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDL 227 (706)
Q Consensus 157 ~~l~~~~l~g~~~~l-t~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 227 (706)
..|++++.+|+...+ ........++++|||+ |++...... ...|+.++..+++++.+...
T Consensus 53 ~~I~~~d~~g~~~~~~~~~~~p~gia~~~dG~-l~vad~~~~----------~~~v~~~d~~~g~~~~~~~~ 113 (306)
T 2p4o_A 53 GEIVSITPDGNQQIHATVEGKVSGLAFTSNGD-LVATGWNAD----------SIPVVSLVKSDGTVETLLTL 113 (306)
T ss_dssp TEEEEECTTCCEEEEEECSSEEEEEEECTTSC-EEEEEECTT----------SCEEEEEECTTSCEEEEEEC
T ss_pred CeEEEECCCCceEEEEeCCCCceeEEEcCCCc-EEEEeccCC----------cceEEEEcCCCCeEEEEEeC
Confidence 578999987744332 2335677899999998 554442211 12577788777766665543
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.033 Score=54.92 Aligned_cols=192 Identities=14% Similarity=0.076 Sum_probs=108.1
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~ 111 (706)
....+.++|||+ |+++. .....|++++.+ ++.+.+..... ...+..+..+++|+. ++...
T Consensus 63 ~~~~i~~~~~g~-l~v~~---------~~~~~v~~~d~~-g~~~~~~~~~~---~~~~~~i~~~~~g~l-~v~~~----- 122 (300)
T 2qc5_A 63 KVMCLIVSSLGD-IWFTE---------NGANKIGKLSKK-GGFTEYPLPQP---DSGPYGITEGLNGDI-WFTQL----- 122 (300)
T ss_dssp CEEEEEECTTSC-EEEEE---------TTTTEEEEECTT-SCEEEEECSST---TCCEEEEEECSTTCE-EEEET-----
T ss_pred cceeEEECCCCC-EEEEe---------cCCCeEEEECCC-CCeEEecCCCC---CCCCccceECCCCCE-EEEcc-----
Confidence 466778889886 43332 334678899887 65554432111 012556778888874 44321
Q ss_pred CCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCCCceec--CCC-ceEeeeeeCCCCcE
Q 005240 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDF--GTP-AVYTAVEPSPDQKY 188 (706)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g~~~~l--t~~-~~~~~~~~SpDG~~ 188 (706)
....|++++.+|+...+ ... .....++++|+|+
T Consensus 123 -------------------------------------------~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~- 158 (300)
T 2qc5_A 123 -------------------------------------------NGDRIGKLTADGTIYEYDLPNKGSYPAFITLGSDNA- 158 (300)
T ss_dssp -------------------------------------------TTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSS-
T ss_pred -------------------------------------------CCCeEEEECCCCCEEEccCCCCCCCceeEEECCCCC-
Confidence 11568888877754433 222 4677889999998
Q ss_pred EEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCC
Q 005240 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDA 268 (706)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~ 268 (706)
|++.... ...|++++.++. ...+.. +... ..+..+.+.++|. |++.. ..
T Consensus 159 l~v~~~~------------~~~i~~~~~~g~-~~~~~~-~~~~----------~~~~~i~~d~~g~--l~v~~-~~---- 207 (300)
T 2qc5_A 159 LWFTENQ------------NNSIGRITNTGK-LEEYPL-PTNA----------AAPVGITSGNDGA--LWFVE-IM---- 207 (300)
T ss_dssp EEEEETT------------TTEEEEECTTCC-EEEEEC-SSTT----------CCEEEEEECTTSS--EEEEE-TT----
T ss_pred EEEEecC------------CCeEEEECCCCc-EEEeeC-CCCC----------CCcceEEECCCCC--EEEEc-cC----
Confidence 6555432 237888988543 333321 1110 1234677888875 66542 11
Q ss_pred ccccCccceeeeecCCCCCCCCceEEe--ecccccccceecCCCceEEEEeeccccceEEEEEcCC
Q 005240 269 NVEVSPRDIIYTQPAEPAEGEKPEILH--KLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPG 332 (706)
Q Consensus 269 ~~~~~~~~~l~~~d~~~~~~~~~~~l~--~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~ 332 (706)
.+.|++++. . ++...+. ........+.+.++|+ |++.. . ....|++++.+
T Consensus 208 ------~~~i~~~~~---~-g~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~-~--~~~~i~~~~~~ 259 (300)
T 2qc5_A 208 ------GNKIGRITT---T-GEISEYDIPTPNARPHAITAGKNSE-IWFTE-W--GANQIGRITND 259 (300)
T ss_dssp ------TTEEEEECT---T-CCEEEEECSSTTCCEEEEEECSTTC-EEEEE-T--TTTEEEEECTT
T ss_pred ------CCEEEEEcC---C-CcEEEEECCCCCCCceEEEECCCCC-EEEec-c--CCCeEEEECCC
Confidence 124677765 2 3433332 1233456678889987 44432 1 23468899984
|
| >4ebb_A Dipeptidyl peptidase 2; hydrolase; HET: MSE NAG; 2.00A {Homo sapiens} PDB: 3jyh_A* 3n0t_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00041 Score=74.15 Aligned_cols=60 Identities=27% Similarity=0.287 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCC
Q 005240 579 VEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYN 638 (706)
Q Consensus 579 ~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d 638 (706)
.++++.|+...++++++.--....+++++|+||||.||+|+-.++|+.|.++++.++...
T Consensus 105 ~eQALaD~a~fi~~~k~~~~~~~~pwI~~GGSY~G~LaAW~R~kYP~lv~ga~ASSApv~ 164 (472)
T 4ebb_A 105 VEQALADFAELLRALRRDLGAQDAPAIAFGGSYGGMLSAYLRMKYPHLVAGALAASAPVL 164 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCTTCCEEEEEETHHHHHHHHHHHHCTTTCSEEEEETCCTT
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCEEEEccCccchhhHHHHhhCCCeEEEEEecccceE
Confidence 568899999999999876444557999999999999999999999999998888877543
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=97.50 E-value=0.014 Score=56.20 Aligned_cols=200 Identities=9% Similarity=-0.027 Sum_probs=105.2
Q ss_pred eEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCc
Q 005240 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPS 255 (706)
Q Consensus 176 ~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~ 255 (706)
....+.|+ |+ .|+.+....+ .+.|.++|++++++..-...+. ........++++.
T Consensus 44 ftqGL~~~-~~-~LyestG~~g----------~S~v~~vD~~Tgkv~~~~~l~~-------------~~FgeGit~~g~~ 98 (262)
T 3nol_A 44 FTEGFFYR-NG-YFYESTGLNG----------RSSIRKVDIESGKTLQQIELGK-------------RYFGEGISDWKDK 98 (262)
T ss_dssp EEEEEEEE-TT-EEEEEEEETT----------EEEEEEECTTTCCEEEEEECCT-------------TCCEEEEEEETTE
T ss_pred ccceEEEE-CC-EEEEECCCCC----------CceEEEEECCCCcEEEEEecCC-------------ccceeEEEEeCCE
Confidence 44578888 55 6766554432 3589999999776544322221 1112234556665
Q ss_pred eEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCCCC
Q 005240 256 TLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKD 335 (706)
Q Consensus 256 ~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~ 335 (706)
||.+. +..+.++++|. ++.+...-..... .....++|++.|+.+. +..+|+.+|+++.+
T Consensus 99 -ly~lt-----------w~~~~v~v~D~---~t~~~~~ti~~~~--eG~glt~dg~~L~~Sd----Gs~~i~~iDp~T~~ 157 (262)
T 3nol_A 99 -IVGLT-----------WKNGLGFVWNI---RNLRQVRSFNYDG--EGWGLTHNDQYLIMSD----GTPVLRFLDPESLT 157 (262)
T ss_dssp -EEEEE-----------SSSSEEEEEET---TTCCEEEEEECSS--CCCCEEECSSCEEECC----SSSEEEEECTTTCS
T ss_pred -EEEEE-----------eeCCEEEEEEC---ccCcEEEEEECCC--CceEEecCCCEEEEEC----CCCeEEEEcCCCCe
Confidence 76442 12346889998 5544433222222 3345667888877642 24579999999853
Q ss_pred CCceee-ecCcccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeeeccc
Q 005240 336 VAPRVL-FDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESN 414 (706)
Q Consensus 336 ~~~~~l-~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~ 414 (706)
.. ..+ ....-..+. ...++.|. +| .|++.. .....|.++|+++|++...++..
T Consensus 158 v~-~~I~V~~~g~~~~---~lNELe~~-~G-~lyan~--------------------w~~~~I~vIDp~tG~V~~~Id~~ 211 (262)
T 3nol_A 158 PV-RTITVTAHGEELP---ELNELEWV-DG-EIFANV--------------------WQTNKIVRIDPETGKVTGIIDLN 211 (262)
T ss_dssp EE-EEEECEETTEECC---CEEEEEEE-TT-EEEEEE--------------------TTSSEEEEECTTTCBEEEEEECT
T ss_pred EE-EEEEeccCCcccc---ccceeEEE-CC-EEEEEE--------------------ccCCeEEEEECCCCcEEEEEECC
Confidence 11 111 100000000 00013332 44 344332 12236889999999987777654
Q ss_pred chhhhhhhh-hhc--cCCCceecccCCCEEEEEEecCC
Q 005240 415 REKYFETAV-ALV--FGQGEEDINLNQLKILTSKESKT 449 (706)
Q Consensus 415 ~~~~~~~~~-~~~--~~~~~~~~s~Dg~~l~~~~~~~~ 449 (706)
+- ..... ... +.-+-.+++|++++|+.+.-.-.
T Consensus 212 ~L--~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp 247 (262)
T 3nol_A 212 GI--LAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWP 247 (262)
T ss_dssp TG--GGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCS
T ss_pred cC--ccccccccCcCCceEEEEEcCCCCEEEEECCCCC
Confidence 21 00000 000 01124789999998888765553
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=0.018 Score=58.13 Aligned_cols=145 Identities=14% Similarity=0.042 Sum_probs=75.7
Q ss_pred eEEEEccCC-CceecCCC------ceEeeeeeCC-CCcEEEEEeeccCcccc-----cccccccceEEEEecCCCeeEEc
Q 005240 158 QLVLGSLDG-TAKDFGTP------AVYTAVEPSP-DQKYVLITSMHRPYSYK-----VPCARFSQKVQVWTTDGKLVREL 224 (706)
Q Consensus 158 ~l~~~~l~g-~~~~lt~~------~~~~~~~~Sp-DG~~i~~~~~~~~~~~~-----~~~~~~~~~i~~~~~~~~~~~~l 224 (706)
.|++++.++ +.+.+... .....+++.| || .|+++......... .........|++++.++++.+.+
T Consensus 102 ~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~ 180 (322)
T 2fp8_A 102 HLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTG-IVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLL 180 (322)
T ss_dssp EEEEECTTCEECEEEESEETTEECSCEEEEEECTTTC-CEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEE
T ss_pred CEEEEeCCCCEEEEecccCCCCcccccceEEEecCCC-EEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEe
Confidence 467777753 44443221 2356788999 88 56666432110000 00000125789999887766554
Q ss_pred ccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCC---CCceEEeeccccc
Q 005240 225 CDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEG---EKPEILHKLDLRF 301 (706)
Q Consensus 225 ~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~---~~~~~l~~~~~~~ 301 (706)
.... ..+..++|+|||+. ||+.. .. ...|++++. ++ +..+.+....+ .
T Consensus 181 ~~~~-------------~~p~gia~~~dg~~-lyv~d-~~----------~~~I~~~~~---~~~~~~~~~~~~~~~g-P 231 (322)
T 2fp8_A 181 LKEL-------------HVPGGAEVSADSSF-VLVAE-FL----------SHQIVKYWL---EGPKKGTAEVLVKIPN-P 231 (322)
T ss_dssp EEEE-------------SCCCEEEECTTSSE-EEEEE-GG----------GTEEEEEES---SSTTTTCEEEEEECSS-E
T ss_pred ccCC-------------ccCcceEECCCCCE-EEEEe-CC----------CCeEEEEEC---CCCcCCccceEEeCCC-C
Confidence 3221 11336799999986 66542 21 124777777 33 23333332233 5
Q ss_pred ccceecCCCceEEEEeecc-------ccceEEEEEcCCC
Q 005240 302 RSVSWCDDSLALVNETWYK-------TSQTRTWLVCPGS 333 (706)
Q Consensus 302 ~~~~wspDg~~l~~~~~~~-------~~~~~l~~~d~~~ 333 (706)
..+...++|. |+++.... .....|+++|.++
T Consensus 232 ~gi~~d~~G~-l~va~~~~~~~~~~~~~~~~v~~~d~~G 269 (322)
T 2fp8_A 232 GNIKRNADGH-FWVSSSEELDGNMHGRVDPKGIKFDEFG 269 (322)
T ss_dssp EEEEECTTSC-EEEEEEEETTSSTTSCEEEEEEEECTTS
T ss_pred CCeEECCCCC-EEEEecCcccccccCCCccEEEEECCCC
Confidence 5667888886 33332220 1135688888764
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.0021 Score=68.09 Aligned_cols=146 Identities=10% Similarity=0.131 Sum_probs=91.2
Q ss_pred cccceeeCC-CCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCC
Q 005240 32 KINFVSWSP-DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (706)
Q Consensus 32 ~~~~~~~SP-DG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~ 110 (706)
....++++| ++..|+++. .. ..|++++++++..+.+..... ....++|+++|++|++.-.....
T Consensus 138 ~P~~lavdp~~~g~Lyv~d---------~~-~~I~~id~~~~~v~~~~~~~~-----~P~~ia~d~~G~~lyvad~~~~~ 202 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVG---------EQ-HPTRLIDFEKEYVSTVYSGLS-----KVRTICWTHEADSMIITNDQNNN 202 (430)
T ss_dssp CCCEEEEETTEEEEEEEEE---------BT-EEEEEEETTTTEEEEEECCCS-----CEEEEEECTTSSEEEEEECCSCT
T ss_pred CCCEEEECCCCCCeEEEEe---------CC-CcEEEEECCCCEEEEEecCCC-----CcceEEEeCCCCEEEEEeCCCCc
Confidence 456788999 577775542 22 789999999888776643222 25678999999987776321110
Q ss_pred CCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCCCc---eecCCCceEeeeeeCCCCc
Q 005240 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTA---KDFGTPAVYTAVEPSPDQK 187 (706)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g~~---~~lt~~~~~~~~~~SpDG~ 187 (706)
....++.++.+|.. +.+........++++|++.
T Consensus 203 --------------------------------------------~~~~v~~~~~~g~~~~~~~l~~~~~p~giavdp~~g 238 (430)
T 3tc9_A 203 --------------------------------------------DRPNNYILTRESGFKVITELTKGQNCNGAETHPING 238 (430)
T ss_dssp --------------------------------------------TSEEEEEEEGGGTSCSEEEEEECSSCCCEEECTTTC
T ss_pred --------------------------------------------ccceEEEEeCCCceeeeeeeccCCCceEEEEeCCCC
Confidence 01245555554422 2232223456788999666
Q ss_pred EEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEE
Q 005240 188 YVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWV 260 (706)
Q Consensus 188 ~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~ 260 (706)
+|+++... ..+|++++.+++....+...... ..+..++|+|+|+. ||++
T Consensus 239 ~lyv~d~~------------~~~V~~~~~~~~~~~~~~~~~~~-----------~~P~gia~~pdG~~-lyv~ 287 (430)
T 3tc9_A 239 ELYFNSWN------------AGQVFRYDFTTQETTPLFTIQDS-----------GWEFHIQFHPSGNY-AYIV 287 (430)
T ss_dssp CEEEEETT------------TTEEEEEETTTTEEEEEEECSSS-----------SCCEEEEECTTSSE-EEEE
T ss_pred EEEEEECC------------CCEEEEEECCCCcEEEEEEcCCC-----------CcceeEEEcCCCCE-EEEE
Confidence 78776643 24899999998776444332211 12447899999986 7755
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.0032 Score=60.63 Aligned_cols=200 Identities=9% Similarity=-0.052 Sum_probs=111.7
Q ss_pred eecCCCCCc--ccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEE
Q 005240 24 VHGYPDGAK--INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLL 101 (706)
Q Consensus 24 i~~~~~~~~--~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l 101 (706)
+..+|.+.. .....|+ |+.|+.+.. ...+|.++|+++|+..+-. .+.. +-.-...++|+.|
T Consensus 46 v~~~phd~~~ftqGL~~~--~~~Ly~stG---------~~g~v~~iD~~Tgkv~~~~-l~~~-----~FgeGit~~g~~L 108 (268)
T 3nok_A 46 IREYPHATNAFTQGLVFH--QGHFFESTG---------HQGTLRQLSLESAQPVWME-RLGN-----IFAEGLASDGERL 108 (268)
T ss_dssp EEEEECCTTCCEEEEEEE--TTEEEEEET---------TTTEEEECCSSCSSCSEEE-ECTT-----CCEEEEEECSSCE
T ss_pred EEEEcCCCccccceEEEE--CCEEEEEcC---------CCCEEEEEECCCCcEEeEE-CCCC-----cceeEEEEeCCEE
Confidence 444454432 2456665 567754432 2234999999998765433 2321 1112245678777
Q ss_pred EEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CC-CceecCCCceEee
Q 005240 102 IFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTPAVYTA 179 (706)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g-~~~~lt~~~~~~~ 179 (706)
+.... ....++++|. +. ....+..... .
T Consensus 109 y~ltw------------------------------------------------~~~~v~V~D~~Tl~~~~ti~~~~e--G 138 (268)
T 3nok_A 109 YQLTW------------------------------------------------TEGLLFTWSGMPPQRERTTRYSGE--G 138 (268)
T ss_dssp EEEES------------------------------------------------SSCEEEEEETTTTEEEEEEECSSC--C
T ss_pred EEEEc------------------------------------------------cCCEEEEEECCcCcEEEEEeCCCc--e
Confidence 76632 2268999998 55 3444443321 3
Q ss_pred eeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCee-EEcccCCCCCCCCcccCccCCCCcceeeecCCCceEE
Q 005240 180 VEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLY 258 (706)
Q Consensus 180 ~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~ 258 (706)
..+++||++|+.+. . ...|+++|..+.++ +++.-.... .+. .....+.|. ||+ ||
T Consensus 139 wGLt~Dg~~L~vSd-G------------s~~l~~iDp~T~~v~~~I~V~~~g--~~v------~~lNeLe~~-dG~--ly 194 (268)
T 3nok_A 139 WGLCYWNGKLVRSD-G------------GTMLTFHEPDGFALVGAVQVKLRG--QPV------ELINELECA-NGV--IY 194 (268)
T ss_dssp CCEEEETTEEEEEC-S------------SSEEEEECTTTCCEEEEEECEETT--EEC------CCEEEEEEE-TTE--EE
T ss_pred eEEecCCCEEEEEC-C------------CCEEEEEcCCCCeEEEEEEeCCCC--ccc------ccccccEEe-CCE--EE
Confidence 45568999887664 2 24899999886543 333222110 010 001134565 563 55
Q ss_pred EEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecc--------------cccccceecCCCceEEEEeeccccce
Q 005240 259 WVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLD--------------LRFRSVSWCDDSLALVNETWYKTSQT 324 (706)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~--------------~~~~~~~wspDg~~l~~~~~~~~~~~ 324 (706)
+. .+..+.|.++|. +++++....... .....++|.|++++|+.+. + .+.
T Consensus 195 -an----------vw~s~~I~vIDp---~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG--K-~Wp 257 (268)
T 3nok_A 195 -AN----------IWHSSDVLEIDP---ATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG--K-LWP 257 (268)
T ss_dssp -EE----------ETTCSEEEEECT---TTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE--T-TCS
T ss_pred -EE----------ECCCCeEEEEeC---CCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC--C-CCC
Confidence 32 123346888888 677765432211 2346789999998888754 2 567
Q ss_pred EEEEEcC
Q 005240 325 RTWLVCP 331 (706)
Q Consensus 325 ~l~~~d~ 331 (706)
+||.+.+
T Consensus 258 ~~~ev~~ 264 (268)
T 3nok_A 258 RLFEVRL 264 (268)
T ss_dssp EEEEEEE
T ss_pred ceEEEEE
Confidence 7887753
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.015 Score=55.42 Aligned_cols=206 Identities=14% Similarity=0.068 Sum_probs=115.9
Q ss_pred eeeecCCCCC--cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCc
Q 005240 22 KEVHGYPDGA--KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNST 99 (706)
Q Consensus 22 ~~i~~~~~~~--~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~ 99 (706)
+-+...|... ......|++ .+|+.+.. ..+...|.++|+++|+..+-...+.. +..-...++++
T Consensus 10 ~v~~~~phd~~~ftqGL~~~~--~~LyestG-------~~g~S~v~~vD~~tgkv~~~~~l~~~-----~fgeGi~~~~~ 75 (243)
T 3mbr_X 10 RVVKRYPHDTTAFTEGLFYLR--GHLYESTG-------ETGRSSVRKVDLETGRILQRAEVPPP-----YFGAGIVAWRD 75 (243)
T ss_dssp EEEEEEECCTTCCEEEEEEET--TEEEEEEC-------CTTSCEEEEEETTTCCEEEEEECCTT-----CCEEEEEEETT
T ss_pred EEEEEcCCCCccccccEEEEC--CEEEEECC-------CCCCceEEEEECCCCCEEEEEeCCCC-----cceeEEEEeCC
Confidence 3444444443 445778875 56644432 14568999999999987664433332 22223445677
Q ss_pred EEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CC-CceecCCCceE
Q 005240 100 LLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTPAVY 177 (706)
Q Consensus 100 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g-~~~~lt~~~~~ 177 (706)
+|+.... ....++++|. +. ....+..+.
T Consensus 76 ~ly~ltw------------------------------------------------~~~~v~v~D~~tl~~~~ti~~~~-- 105 (243)
T 3mbr_X 76 RLIQLTW------------------------------------------------RNHEGFVYDLATLTPRARFRYPG-- 105 (243)
T ss_dssp EEEEEES------------------------------------------------SSSEEEEEETTTTEEEEEEECSS--
T ss_pred EEEEEEe------------------------------------------------eCCEEEEEECCcCcEEEEEeCCC--
Confidence 7776531 2268999998 45 344454432
Q ss_pred eeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCee-EEcccCCCCCCCCcccCccCCCCcceeeecCCCce
Q 005240 178 TAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIPVCYNSVREGMRSISWRADKPST 256 (706)
Q Consensus 178 ~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~ 256 (706)
....+++||++|+.+. . ...|+++|..+.++ +++.-... ..|.. ....+.|. +|+
T Consensus 106 ~Gwglt~dg~~L~vSd-g------------s~~l~~iDp~t~~~~~~I~V~~~--g~~~~------~lNeLe~~-~G~-- 161 (243)
T 3mbr_X 106 EGWALTSDDSHLYMSD-G------------TAVIRKLDPDTLQQVGSIKVTAG--GRPLD------NLNELEWV-NGE-- 161 (243)
T ss_dssp CCCEEEECSSCEEEEC-S------------SSEEEEECTTTCCEEEEEECEET--TEECC------CEEEEEEE-TTE--
T ss_pred CceEEeeCCCEEEEEC-C------------CCeEEEEeCCCCeEEEEEEEccC--Ccccc------cceeeEEe-CCE--
Confidence 2345568999887654 3 24799999886543 33322211 01100 01123444 443
Q ss_pred EEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeec--------------ccccccceecCCCceEEEEeecccc
Q 005240 257 LYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL--------------DLRFRSVSWCDDSLALVNETWYKTS 322 (706)
Q Consensus 257 l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~--------------~~~~~~~~wspDg~~l~~~~~~~~~ 322 (706)
|| +. ++..+.|.++|. ++|++...... ......++|.|++++|+.+. + .
T Consensus 162 ly-an----------vw~s~~I~vIDp---~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG--K-~ 224 (243)
T 3mbr_X 162 LL-AN----------VWLTSRIARIDP---ASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG--K-R 224 (243)
T ss_dssp EE-EE----------ETTTTEEEEECT---TTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE--T-T
T ss_pred EE-EE----------ECCCCeEEEEEC---CCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC--C-C
Confidence 44 32 223346788887 66665443221 12346689999998888764 2 5
Q ss_pred ceEEEEEcCC
Q 005240 323 QTRTWLVCPG 332 (706)
Q Consensus 323 ~~~l~~~d~~ 332 (706)
+.+||.+.+.
T Consensus 225 wp~~~~v~~~ 234 (243)
T 3mbr_X 225 WPMLYEIRLT 234 (243)
T ss_dssp CSEEEEEEEC
T ss_pred CCcEEEEEEe
Confidence 6778887654
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.042 Score=55.32 Aligned_cols=130 Identities=8% Similarity=0.030 Sum_probs=73.7
Q ss_pred eEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeec-CCC
Q 005240 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRA-DKP 254 (706)
Q Consensus 176 ~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~sp-dg~ 254 (706)
....++++|+...|++.... ..+.+++.+++..+.+...... .+. ..+..+.+.+ +|+
T Consensus 81 ~p~gi~~~~~~g~l~v~d~~-------------~~i~~~d~~~g~~~~~~~~~~~--~~~------~~p~~i~~d~~~G~ 139 (322)
T 2fp8_A 81 RTYDISYNLQNNQLYIVDCY-------------YHLSVVGSEGGHATQLATSVDG--VPF------KWLYAVTVDQRTGI 139 (322)
T ss_dssp CEEEEEEETTTTEEEEEETT-------------TEEEEECTTCEECEEEESEETT--EEC------SCEEEEEECTTTCC
T ss_pred CCceEEEcCCCCcEEEEECC-------------CCEEEEeCCCCEEEEecccCCC--Ccc------cccceEEEecCCCE
Confidence 45678888844456655432 2478888887766655432110 000 1123678888 885
Q ss_pred ceEEEEEeccCCCCcc------ccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccccceEEEE
Q 005240 255 STLYWVEAQDRGDANV------EVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWL 328 (706)
Q Consensus 255 ~~l~~~~~~~~~~~~~------~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~ 328 (706)
||+........... .......|+++|. ++++.+.+.........++|+|||+.|++... ...+|++
T Consensus 140 --l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~---~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~---~~~~I~~ 211 (322)
T 2fp8_A 140 --VYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDP---STKETTLLLKELHVPGGAEVSADSSFVLVAEF---LSHQIVK 211 (322)
T ss_dssp --EEEEESCSSCCTTCHHHHHHHTCCCEEEEEEET---TTTEEEEEEEEESCCCEEEECTTSSEEEEEEG---GGTEEEE
T ss_pred --EEEECCcccccccccceehcccCCCceEEEEeC---CCCEEEEeccCCccCcceEECCCCCEEEEEeC---CCCeEEE
Confidence 66553211000000 0012246888887 55665555443344567899999998877642 3457999
Q ss_pred EcCCCC
Q 005240 329 VCPGSK 334 (706)
Q Consensus 329 ~d~~~~ 334 (706)
+++++.
T Consensus 212 ~~~~~~ 217 (322)
T 2fp8_A 212 YWLEGP 217 (322)
T ss_dssp EESSST
T ss_pred EECCCC
Confidence 998863
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.013 Score=61.89 Aligned_cols=145 Identities=10% Similarity=0.040 Sum_probs=85.6
Q ss_pred cccceeeCCC--CCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCC
Q 005240 32 KINFVSWSPD--GKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSR 109 (706)
Q Consensus 32 ~~~~~~~SPD--G~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~ 109 (706)
....++|+|| +..|+++. .. ..|+++++++++.+.+..... .+..++|++||+ |++......
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D---------~~-~~I~~id~~~g~v~~~~~~~~-----~P~giavd~dG~-lyVad~~~~ 203 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVG---------QR-DAFRHVDFVNQYVDIKTTNIG-----QCADVNFTLNGD-MVVVDDQSS 203 (433)
T ss_dssp CCCEEEECTTTTTCEEEEEC---------BT-SCEEEEETTTTEEEEECCCCS-----CEEEEEECTTCC-EEEEECCSC
T ss_pred CCceEEEccccCCCEEEEEe---------CC-CCEEEEECCCCEEEEeecCCC-----CccEEEECCCCC-EEEEcCCCC
Confidence 3557899995 56675542 12 789999998888777643222 156889999999 666532110
Q ss_pred CCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCCCc---eecCCCceEeeeeeCCCC
Q 005240 110 RDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTA---KDFGTPAVYTAVEPSPDQ 186 (706)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g~~---~~lt~~~~~~~~~~SpDG 186 (706)
. ....++.++.++.. ..+........++++|++
T Consensus 204 ~--------------------------------------------~~~gv~~~~~~~~~~~~~~~~~~~~P~giavd~~~ 239 (433)
T 4hw6_A 204 D--------------------------------------------TNTGIYLFTRASGFTERLSLCNARGAKTCAVHPQN 239 (433)
T ss_dssp T--------------------------------------------TSEEEEEECGGGTTCCEEEEEECSSBCCCEECTTT
T ss_pred c--------------------------------------------ccceEEEEECCCCeeccccccccCCCCEEEEeCCC
Confidence 0 01234444443311 122222345678899966
Q ss_pred cEEEEEeeccCcccccccccccceEEEEecCCCee-EEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEE
Q 005240 187 KYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWV 260 (706)
Q Consensus 187 ~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~ 260 (706)
..|++.... ...|++++.+++.. +.+...... + ....++|+|+|+. ||+.
T Consensus 240 G~lyv~d~~------------~~~V~~~d~~~g~~~~~~~~~~~~---~--------~~~~ia~dpdG~~-LYva 290 (433)
T 4hw6_A 240 GKIYYTRYH------------HAMISSYDPATGTLTEEEVMMDTK---G--------SNFHIVWHPTGDW-AYII 290 (433)
T ss_dssp CCEEECBTT------------CSEEEEECTTTCCEEEEEEECSCC---S--------SCEEEEECTTSSE-EEEE
T ss_pred CeEEEEECC------------CCEEEEEECCCCeEEEEEeccCCC---C--------CcccEEEeCCCCE-EEEE
Confidence 678766543 24799999985555 444322110 0 1125899999986 7755
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.13 Score=49.64 Aligned_cols=115 Identities=14% Similarity=0.163 Sum_probs=69.0
Q ss_pred ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCC
Q 005240 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (706)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~ 254 (706)
..++.++|.||++.|+.+.+.. ..|+.++++++..+++.-....+ ...+++.+++.
T Consensus 27 ~~lSGla~~~~~~~L~aV~d~~------------~~I~~ld~~g~v~~~i~l~g~~D------------~EGIa~~~~g~ 82 (255)
T 3qqz_A 27 NNISSLTWSAQSNTLFSTINKP------------AAIVEMTTNGDLIRTIPLDFVKD------------LETIEYIGDNQ 82 (255)
T ss_dssp SCEEEEEEETTTTEEEEEEETT------------EEEEEEETTCCEEEEEECSSCSS------------EEEEEECSTTE
T ss_pred cCcceeEEeCCCCEEEEEECCC------------CeEEEEeCCCCEEEEEecCCCCC------------hHHeEEeCCCE
Confidence 4688999999999998777653 47999999977666653321111 22567776664
Q ss_pred ceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEe---------ecccccccceecCCCceEEEEeeccccceE
Q 005240 255 STLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH---------KLDLRFRSVSWCDDSLALVNETWYKTSQTR 325 (706)
Q Consensus 255 ~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~---------~~~~~~~~~~wspDg~~l~~~~~~~~~~~~ 325 (706)
+ +++... ...+++++++ ..+....+. ........++|.|++.+|+... +. ....
T Consensus 83 --~-~vs~E~----------~~~l~~~~v~--~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~-E~-~p~~ 145 (255)
T 3qqz_A 83 --F-VISDER----------DYAIYVISLT--PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFK-EK-NPIE 145 (255)
T ss_dssp --E-EEEETT----------TTEEEEEEEC--TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEE-ES-SSEE
T ss_pred --E-EEEECC----------CCcEEEEEcC--CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEE-Cc-CCce
Confidence 3 343221 1235565552 122222111 1123356889999998888764 33 2457
Q ss_pred EEEEc
Q 005240 326 TWLVC 330 (706)
Q Consensus 326 l~~~d 330 (706)
||.++
T Consensus 146 i~~~~ 150 (255)
T 3qqz_A 146 VYKVN 150 (255)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 99998
|
| >3tej_A Enterobactin synthase component F; nonribosomal peptide, thioesterase, carrier domain, ATP- BIN enterobactin biosynthesis, ION transport, iron; HET: UF0; 1.90A {Escherichia coli} PDB: 2roq_A | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00061 Score=69.46 Aligned_cols=77 Identities=9% Similarity=-0.000 Sum_probs=50.1
Q ss_pred HCCeEEEEcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHh---CCCceeE
Q 005240 553 ARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAH---APHLFCC 629 (706)
Q Consensus 553 ~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~---~p~~~~a 629 (706)
..+|.|+..+.. |+|..............++...+..+. ...++.++||||||.++..++.+ .|++++.
T Consensus 125 ~~~~~v~~~d~~---g~~~~~~~~~~~~~~a~~~~~~i~~~~-----~~~~~~l~G~S~Gg~ia~~~a~~L~~~~~~v~~ 196 (329)
T 3tej_A 125 DPQWSIIGIQSP---RPNGPMQTAANLDEVCEAHLATLLEQQ-----PHGPYYLLGYSLGGTLAQGIAARLRARGEQVAF 196 (329)
T ss_dssp CTTCEEEEECCC---TTTSHHHHCSSHHHHHHHHHHHHHHHC-----SSSCEEEEEETHHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCCeEEEeeCC---CCCCCCCCCCCHHHHHHHHHHHHHHhC-----CCCCEEEEEEccCHHHHHHHHHHHHhcCCcccE
Confidence 467888875554 333321111223444444444443321 12589999999999999999998 9999999
Q ss_pred EEeccCCC
Q 005240 630 GIARSGSY 637 (706)
Q Consensus 630 ~v~~~~~~ 637 (706)
++...+..
T Consensus 197 lvl~d~~~ 204 (329)
T 3tej_A 197 LGLLDTWP 204 (329)
T ss_dssp EEEESCCC
T ss_pred EEEeCCCC
Confidence 98887643
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.081 Score=53.52 Aligned_cols=289 Identities=12% Similarity=0.091 Sum_probs=0.0
Q ss_pred CCCCeeeeecCCCCC-cccceeeCCCCCeEEEEeeccccccccCC-ceeEEEEEcCCCceeecccCC--Cccccccccce
Q 005240 17 SLGPEKEVHGYPDGA-KINFVSWSPDGKRIAFSVRVDEEDNVSSC-KLRVWIADAETGEAKPLFESP--DICLNAVFGSF 92 (706)
Q Consensus 17 ~~g~~~~i~~~~~~~-~~~~~~~SPDG~~laf~~~~~~~~~~~~~-~~~l~~~d~~~g~~~~lt~~~--~~~~~~~~~~~ 92 (706)
+.+....++.+.++. ....++|.|||+.++- .. ...|++++.++++...+...+ ......+...+
T Consensus 17 ~~~~~~~~~~va~gL~~P~~ia~~pdG~llVt-----------er~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGi 85 (347)
T 3das_A 17 AKGSVKVLRTVATGLNSPWGLAPLPGGDLLVS-----------SRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGI 85 (347)
T ss_dssp SSCCEEEEEEEECCCSSEEEEEECTTSCEEEE-----------ETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEE
T ss_pred ccCCCceeEEeecCCCCceEEEEcCCCcEEEE-----------EecCCEEEEEECCCCcEeeecccCceeecCCCCceee
Q ss_pred EEecC---CcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCC---
Q 005240 93 VWVNN---STLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG--- 166 (706)
Q Consensus 93 ~wSpD---g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g--- 166 (706)
+++|| ..+||+....... ..|+++.+++
T Consensus 86 a~~Pdf~~~g~lYv~yt~~~~----------------------------------------------~~v~R~~~~~~~~ 119 (347)
T 3das_A 86 ALSPDYASDHMVYAYFTSASD----------------------------------------------NRIVRMLYDEKKP 119 (347)
T ss_dssp EECTTHHHHCEEEEEEECSSS----------------------------------------------EEEEEEEBCTTSC
T ss_pred EeccccccCCEEEEEEecCCC----------------------------------------------CEEEEEEeCCCCc
Q ss_pred ------CceecCCC------ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCC--------eeEEccc
Q 005240 167 ------TAKDFGTP------AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK--------LVRELCD 226 (706)
Q Consensus 167 ------~~~~lt~~------~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--------~~~~l~~ 226 (706)
+.+.|... .....++|.|||+..+-+..................|++++.+++ ..+....
T Consensus 120 ~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~~~i~a~ 199 (347)
T 3das_A 120 SGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFPGSPVYSY 199 (347)
T ss_dssp TTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSSTTCCEEEB
T ss_pred ccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCCCCCeEEee
Q ss_pred CCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCC---------ceEEeec
Q 005240 227 LPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEK---------PEILHKL 297 (706)
Q Consensus 227 ~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~---------~~~l~~~ 297 (706)
+. ..+..++|.|+|. |++...-.....+...-..+.-|-|.. -.+. ...+...
T Consensus 200 G~-------------RNp~Gla~dp~G~--L~~~d~g~~~~deln~i~~G~nyGwP~---~~g~~~~~~~~~P~~~~~~~ 261 (347)
T 3das_A 200 GH-------------RNVQGLAWDDKQR--LFASEFGQDTWDELNAIKPGDNYGWPE---AEGKGGGSGFHDPVAQWSTD 261 (347)
T ss_dssp CC-------------SBCCEEEECTTCC--EEEEECCSSSCEEEEEECTTCBCCTTT---CCSSCCCTTCCCCSEEECTT
T ss_pred CC-------------CCcceEEECCCCC--EEEEecCCCCCceeeEEcCCCEecCCc---ccCCCCCccccCCcEecCCC
Q ss_pred ccccccceecCCCceEEEEeeccccceEEEEEcCCCCC--CCceeeecCcccccccCCCCCceEeccCCCEEEEeeeccC
Q 005240 298 DLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKD--VAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKEN 375 (706)
Q Consensus 298 ~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~ 375 (706)
......+.|. +|..++... ...+|+++.+++.+ .++..+......-... +...|||...+.+.
T Consensus 262 ~~ap~G~~~~-~g~~~~~~l----~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~d------v~~~pDG~lyv~td---- 326 (347)
T 3das_A 262 EASPSGIAYA-EGSVWMAGL----RGERLWRIPLKGTAAAADPQAFLEGEYGRLRT------VAPAGGDKLWLVTS---- 326 (347)
T ss_dssp TCCEEEEEEE-TTEEEEEES----TTCSEEEEEEETTEESSCCEEESTTTSSCEEE------EEEEETTEEEEEEC----
T ss_pred CCCCcceEEE-cCceeeccc----cCCEEEEEEecCCceecceEEeecCCCCCccE------EEECCCCcEEEEEc----
Q ss_pred CcceEEEEecCC-CCCCCCCCceeeeecC
Q 005240 376 DEQIYILLNGRG-FTPEGNIPFLDLFDIN 403 (706)
Q Consensus 376 ~~~~~~~~~~~g-~~~~~~~~~l~~~d~~ 403 (706)
+.+| ..+....-.|+++.+.
T Consensus 327 --------~~~g~g~p~~~ddri~r~~~~ 347 (347)
T 3das_A 327 --------NTDGRGDAKGGDDRILELEVE 347 (347)
T ss_dssp --------TTSSSSCCCTTCSCEEEEEEC
T ss_pred --------CCCCCCCCCCCCCEEEEEeCC
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.015 Score=61.82 Aligned_cols=121 Identities=11% Similarity=0.104 Sum_probs=74.5
Q ss_pred ccceeeCC-CCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEE-------ecCCcEEEEE
Q 005240 33 INFVSWSP-DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVW-------VNNSTLLIFT 104 (706)
Q Consensus 33 ~~~~~~SP-DG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~w-------SpDg~~l~~~ 104 (706)
...++++| ++..|+.+. .....|+++|++++....+.......++ .+..++| +++|++|++.
T Consensus 141 p~~la~dp~~~~~Lyv~~---------~~~~~i~~ID~~~~~v~~l~~~~~~~~~-~p~~ia~~~~~~~~d~~G~~lyva 210 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICY---------DGHKAIQLIDLKNRMLSSPLNINTIPTN-RIRSIAFNKKIEGYADEAEYMIVA 210 (496)
T ss_dssp EEEEEEETTEEEEEEEEE---------ETEEEEEEEETTTTEEEEEECCTTSSCS-BEEEEEECCCBTTTBCTTCEEEEE
T ss_pred CCEEEEccCCCCEEEEEE---------CCCCeEEEEECCCCEEEEEEccCccccC-CCcEEEEeecccccCCCCCEEEEE
Confidence 44678999 577774443 2246799999999888776543221122 2567889 9999988876
Q ss_pred ecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc--CCCc------eecCCCce
Q 005240 105 IPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL--DGTA------KDFGTPAV 176 (706)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l--~g~~------~~lt~~~~ 176 (706)
....... .....++.++. +|.. +.+.....
T Consensus 211 d~~~~~~------------------------------------------~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~ 248 (496)
T 3kya_A 211 IDYDGKG------------------------------------------DESPSVYIIKRNADGTFDDRSDIQLIAAYKQ 248 (496)
T ss_dssp ECCCTTG------------------------------------------GGEEEEEEEECCTTSCCSTTSCEEEEEEESC
T ss_pred eCCCCCc------------------------------------------ccCceEEEEecCCCCceeecccceeeccCCC
Confidence 4321100 01134666644 2332 23332234
Q ss_pred EeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecC
Q 005240 177 YTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD 217 (706)
Q Consensus 177 ~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 217 (706)
...++++|++++|+++.... .+|++++++
T Consensus 249 p~giavdp~~g~LYvtd~~~------------g~V~r~d~~ 277 (496)
T 3kya_A 249 CNGATIHPINGELYFNSYEK------------GQVFRLDLV 277 (496)
T ss_dssp CCCEEECTTTCCEEEEETTT------------TEEEEECHH
T ss_pred ceEEEEcCCCCeEEEEECCC------------CEEEEEecc
Confidence 45778999888998877543 479999987
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.047 Score=57.57 Aligned_cols=127 Identities=11% Similarity=0.074 Sum_probs=75.4
Q ss_pred CCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCce--eecccCCCccccccccceEEec
Q 005240 19 GPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA--KPLFESPDICLNAVFGSFVWVN 96 (706)
Q Consensus 19 g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~--~~lt~~~~~~~~~~~~~~~wSp 96 (706)
++.+.+. +.......++|+|||++|+.+... .......++.++.+++-. +.+..... ...++++|
T Consensus 169 ~~v~~~~--~~~~~P~~ia~d~~G~~lyvad~~-----~~~~~~~v~~~~~~g~~~~~~~l~~~~~------p~giavdp 235 (430)
T 3tc9_A 169 EYVSTVY--SGLSKVRTICWTHEADSMIITNDQ-----NNNDRPNNYILTRESGFKVITELTKGQN------CNGAETHP 235 (430)
T ss_dssp TEEEEEE--CCCSCEEEEEECTTSSEEEEEECC-----SCTTSEEEEEEEGGGTSCSEEEEEECSS------CCCEEECT
T ss_pred CEEEEEe--cCCCCcceEEEeCCCCEEEEEeCC-----CCcccceEEEEeCCCceeeeeeeccCCC------ceEEEEeC
Confidence 5555553 233456788999999988665421 011234566666655432 22322111 56778999
Q ss_pred CCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCC-CceecC-CC
Q 005240 97 NSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TAKDFG-TP 174 (706)
Q Consensus 97 Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g-~~~~lt-~~ 174 (706)
++..|++... ...+|++++.++ ....+. ..
T Consensus 236 ~~g~lyv~d~------------------------------------------------~~~~V~~~~~~~~~~~~~~~~~ 267 (430)
T 3tc9_A 236 INGELYFNSW------------------------------------------------NAGQVFRYDFTTQETTPLFTIQ 267 (430)
T ss_dssp TTCCEEEEET------------------------------------------------TTTEEEEEETTTTEEEEEEECS
T ss_pred CCCEEEEEEC------------------------------------------------CCCEEEEEECCCCcEEEEEEcC
Confidence 4444666521 126799999865 332332 11
Q ss_pred --ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCC
Q 005240 175 --AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG 218 (706)
Q Consensus 175 --~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 218 (706)
.....++|+|||++|++..... ..|++++.++
T Consensus 268 ~~~~P~gia~~pdG~~lyv~d~~~------------~~I~~~~~d~ 301 (430)
T 3tc9_A 268 DSGWEFHIQFHPSGNYAYIVVVNQ------------HYILRSDYDW 301 (430)
T ss_dssp SSSCCEEEEECTTSSEEEEEETTT------------TEEEEEEEET
T ss_pred CCCcceeEEEcCCCCEEEEEECCC------------CEEEEEeCCc
Confidence 3466899999999998776442 4788887764
|
| >2hih_A Lipase 46 kDa form; A1 phospholipase, phospholipid binding, hydrolase; 2.86A {Staphylococcus hyicus} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0019 Score=67.68 Aligned_cols=37 Identities=16% Similarity=0.077 Sum_probs=32.4
Q ss_pred CcEEEEEechHHHHHHHHHHh--------------------------CCCceeEEEeccCCCC
Q 005240 602 SRIAVGGHSYGAFMTAHLLAH--------------------------APHLFCCGIARSGSYN 638 (706)
Q Consensus 602 ~~i~i~G~S~GG~~a~~~~~~--------------------------~p~~~~a~v~~~~~~d 638 (706)
.++.++||||||.++..++.+ +|++++.++++++...
T Consensus 151 ~kv~LVGHSmGG~iA~~lA~~l~~~~~~~~~~~~~~gg~i~~l~~g~~p~~V~slv~i~tP~~ 213 (431)
T 2hih_A 151 HPVHFIGHSMGGQTIRLLEHYLRFGDKAEIAYQQQHGGIISELFKGGQDNMVTSITTIATPHN 213 (431)
T ss_dssp BCEEEEEETTHHHHHHHHHHHHHHCCHHHHHHHHHHCSCCCHHHHCCCCSCEEEEEEESCCTT
T ss_pred CCEEEEEEChhHHHHHHHHHHhccccccchhhccccccccccccccCcccceeEEEEECCCCC
Confidence 689999999999999998866 6889999999987544
|
| >2dsn_A Thermostable lipase; T1 lipase, hydrolase; 1.50A {Geobacillus zalihae} PDB: 3umj_A 2z5g_A 1ji3_A 3auk_A 2w22_A* 1ku0_A | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0042 Score=64.07 Aligned_cols=38 Identities=21% Similarity=0.265 Sum_probs=31.7
Q ss_pred CCcEEEEEechHHHHHHHHHHh-------------------CC------CceeEEEeccCCCC
Q 005240 601 PSRIAVGGHSYGAFMTAHLLAH-------------------AP------HLFCCGIARSGSYN 638 (706)
Q Consensus 601 ~~~i~i~G~S~GG~~a~~~~~~-------------------~p------~~~~a~v~~~~~~d 638 (706)
..++.++||||||.++..++.+ .| ++++.++..++...
T Consensus 103 ~~kv~LVGHSmGG~va~~~a~~l~~~~~~e~~~~~~~~~~~~P~~~g~~~~V~sLV~i~tP~~ 165 (387)
T 2dsn_A 103 GGRIHIIAHSQGGQTARMLVSLLENGSQEEREYAKAHNVSLSPLFEGGHHFVLSVTTIATPHD 165 (387)
T ss_dssp TCCEEEEEETTHHHHHHHHHHHHHHCCHHHHHHHHHHTCCCCGGGTCCCCCEEEEEEESCCTT
T ss_pred CCceEEEEECHHHHHHHHHHHHhccccccccccccccccccCccccccccceeEEEEECCCCC
Confidence 4789999999999999999872 35 78999999887554
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.041 Score=52.94 Aligned_cols=202 Identities=10% Similarity=-0.015 Sum_probs=103.4
Q ss_pred EeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCce
Q 005240 177 YTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPST 256 (706)
Q Consensus 177 ~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~ 256 (706)
...+.++ ++.|+.+.... ..|.++|++++++..-. .+.. .......++++.
T Consensus 57 tqGL~~~--~~~Ly~stG~~------------g~v~~iD~~Tgkv~~~~-l~~~-------------~FgeGit~~g~~- 107 (268)
T 3nok_A 57 TQGLVFH--QGHFFESTGHQ------------GTLRQLSLESAQPVWME-RLGN-------------IFAEGLASDGER- 107 (268)
T ss_dssp EEEEEEE--TTEEEEEETTT------------TEEEECCSSCSSCSEEE-ECTT-------------CCEEEEEECSSC-
T ss_pred cceEEEE--CCEEEEEcCCC------------CEEEEEECCCCcEEeEE-CCCC-------------cceeEEEEeCCE-
Confidence 3466675 56777665442 25889999866543322 2210 112234566776
Q ss_pred EEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCCCCC
Q 005240 257 LYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDV 336 (706)
Q Consensus 257 l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~ 336 (706)
||.+. +..+.++++|. ++.+...-..... .....++|++.|+.+. +...|+.+|+++.+.
T Consensus 108 Ly~lt-----------w~~~~v~V~D~---~Tl~~~~ti~~~~--eGwGLt~Dg~~L~vSd----Gs~~l~~iDp~T~~v 167 (268)
T 3nok_A 108 LYQLT-----------WTEGLLFTWSG---MPPQRERTTRYSG--EGWGLCYWNGKLVRSD----GGTMLTFHEPDGFAL 167 (268)
T ss_dssp EEEEE-----------SSSCEEEEEET---TTTEEEEEEECSS--CCCCEEEETTEEEEEC----SSSEEEEECTTTCCE
T ss_pred EEEEE-----------ccCCEEEEEEC---CcCcEEEEEeCCC--ceeEEecCCCEEEEEC----CCCEEEEEcCCCCeE
Confidence 76542 12346889998 4444332222222 2345567888877643 355799999998542
Q ss_pred CceeeecCcccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeeecccch
Q 005240 337 APRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNRE 416 (706)
Q Consensus 337 ~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~ 416 (706)
..+......-..+. ...++.|. +| .|++.. .....|.++|+++|++...++..+-
T Consensus 168 ~~~I~V~~~g~~v~---~lNeLe~~-dG-~lyanv--------------------w~s~~I~vIDp~TG~V~~~Idl~~L 222 (268)
T 3nok_A 168 VGAVQVKLRGQPVE---LINELECA-NG-VIYANI--------------------WHSSDVLEIDPATGTVVGVIDASAL 222 (268)
T ss_dssp EEEEECEETTEECC---CEEEEEEE-TT-EEEEEE--------------------TTCSEEEEECTTTCBEEEEEECHHH
T ss_pred EEEEEeCCCCcccc---cccccEEe-CC-EEEEEE--------------------CCCCeEEEEeCCCCcEEEEEECCCC
Confidence 11111111100000 00112232 55 344332 1223688999999998877766431
Q ss_pred hhhhhhh--hhcc--CCCceecccCCCEEEEEEecCCCCcEEEEE
Q 005240 417 KYFETAV--ALVF--GQGEEDINLNQLKILTSKESKTEITQYHIL 457 (706)
Q Consensus 417 ~~~~~~~--~~~~--~~~~~~~s~Dg~~l~~~~~~~~~p~~v~~~ 457 (706)
..... .... .-+..+++|++++|+.+.-.- |.+|.+
T Consensus 223 --~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~W---p~~~ev 262 (268)
T 3nok_A 223 --TRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLW---PRLFEV 262 (268)
T ss_dssp --HHHHTTTCCCTTCCEEEEEECTTTCCEEEEETTC---SEEEEE
T ss_pred --cccccccccCcCCceEEEEEcCCCCEEEEeCCCC---CceEEE
Confidence 00010 0000 112478899988888765444 445544
|
| >2hfk_A Pikromycin, type I polyketide synthase pikaiv; alpha/beta hydrolase, thioesterase; HET: E4H; 1.79A {Streptomyces venezuelae} PDB: 2h7x_A* 2h7y_A* 2hfj_A* 1mna_A 1mn6_A 1mnq_A | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0041 Score=62.89 Aligned_cols=76 Identities=14% Similarity=0.071 Sum_probs=50.8
Q ss_pred HCCeEEEEcCCCCcCCCCCC-----CCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhC----
Q 005240 553 ARRFAVLAGPSIPIIGEGDK-----LPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHA---- 623 (706)
Q Consensus 553 ~~G~~v~~~~~~~~~g~g~~-----~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~---- 623 (706)
..+|.|+..+.+ |+|.+ .......+....|+.+.++.+. ...++.++|||+||.+|..++.+.
T Consensus 115 ~~~~~v~~~d~~---G~g~~~~~~~~~~~~~~~~~a~~~~~~i~~~~-----~~~p~~l~G~S~GG~vA~~~A~~l~~~~ 186 (319)
T 2hfk_A 115 QEERDFLAVPLP---GYGTGTGTGTALLPADLDTALDAQARAILRAA-----GDAPVVLLGHAGGALLAHELAFRLERAH 186 (319)
T ss_dssp TTTCCEEEECCT---TCCBC---CBCCEESSHHHHHHHHHHHHHHHH-----TTSCEEEEEETHHHHHHHHHHHHHHHHH
T ss_pred CCCCceEEecCC---CCCCCcccccCCCCCCHHHHHHHHHHHHHHhc-----CCCCEEEEEECHHHHHHHHHHHHHHHhh
Confidence 368888874443 44433 2223345566666666655442 125799999999999999999875
Q ss_pred CCceeEEEeccCC
Q 005240 624 PHLFCCGIARSGS 636 (706)
Q Consensus 624 p~~~~a~v~~~~~ 636 (706)
++.++.++...+.
T Consensus 187 g~~v~~lvl~d~~ 199 (319)
T 2hfk_A 187 GAPPAGIVLVDPY 199 (319)
T ss_dssp SCCCSEEEEESCC
T ss_pred CCCceEEEEeCCC
Confidence 4568888887753
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.17 Score=48.07 Aligned_cols=205 Identities=7% Similarity=-0.054 Sum_probs=106.1
Q ss_pred eEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCc
Q 005240 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPS 255 (706)
Q Consensus 176 ~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~ 255 (706)
....+.|++ ..|+.+..... .+.|.++|++++++.+-...+. ........++++.
T Consensus 22 ftqGL~~~~--~~LyestG~~g----------~S~v~~vD~~tgkv~~~~~l~~-------------~~fgeGi~~~~~~ 76 (243)
T 3mbr_X 22 FTEGLFYLR--GHLYESTGETG----------RSSVRKVDLETGRILQRAEVPP-------------PYFGAGIVAWRDR 76 (243)
T ss_dssp CEEEEEEET--TEEEEEECCTT----------SCEEEEEETTTCCEEEEEECCT-------------TCCEEEEEEETTE
T ss_pred ccccEEEEC--CEEEEECCCCC----------CceEEEEECCCCCEEEEEeCCC-------------CcceeEEEEeCCE
Confidence 445777875 57766655432 3589999999776654333221 1112234455665
Q ss_pred eEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCCCC
Q 005240 256 TLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKD 335 (706)
Q Consensus 256 ~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~ 335 (706)
||.+. +..+.++++|. ++.+...-..... .....++|++.|+.+. +...|+.+|+++.+
T Consensus 77 -ly~lt-----------w~~~~v~v~D~---~tl~~~~ti~~~~--~Gwglt~dg~~L~vSd----gs~~l~~iDp~t~~ 135 (243)
T 3mbr_X 77 -LIQLT-----------WRNHEGFVYDL---ATLTPRARFRYPG--EGWALTSDDSHLYMSD----GTAVIRKLDPDTLQ 135 (243)
T ss_dssp -EEEEE-----------SSSSEEEEEET---TTTEEEEEEECSS--CCCEEEECSSCEEEEC----SSSEEEEECTTTCC
T ss_pred -EEEEE-----------eeCCEEEEEEC---CcCcEEEEEeCCC--CceEEeeCCCEEEEEC----CCCeEEEEeCCCCe
Confidence 66442 12346889998 4443332222222 3345567888777642 34579999999853
Q ss_pred CCceee--ecCcccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeeecc
Q 005240 336 VAPRVL--FDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWES 413 (706)
Q Consensus 336 ~~~~~l--~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~ 413 (706)
. ...+ .+... .+. ...++.| .+|+ |+... .....|.++|+++|++...++.
T Consensus 136 ~-~~~I~V~~~g~-~~~---~lNeLe~-~~G~-lyanv--------------------w~s~~I~vIDp~tG~V~~~idl 188 (243)
T 3mbr_X 136 Q-VGSIKVTAGGR-PLD---NLNELEW-VNGE-LLANV--------------------WLTSRIARIDPASGKVVAWIDL 188 (243)
T ss_dssp E-EEEEECEETTE-ECC---CEEEEEE-ETTE-EEEEE--------------------TTTTEEEEECTTTCBEEEEEEC
T ss_pred E-EEEEEEccCCc-ccc---cceeeEE-eCCE-EEEEE--------------------CCCCeEEEEECCCCCEEEEEEC
Confidence 1 1122 11100 000 0001222 1443 33322 1223688999999998777765
Q ss_pred cchhhhhhhhh----hccCCCceecccCCCEEEEEEecCCCCcEEEEEE
Q 005240 414 NREKYFETAVA----LVFGQGEEDINLNQLKILTSKESKTEITQYHILS 458 (706)
Q Consensus 414 ~~~~~~~~~~~----~~~~~~~~~~s~Dg~~l~~~~~~~~~p~~v~~~~ 458 (706)
.+- ...... ..+.-+..+++|++++|+.+.-.- |.+|.+.
T Consensus 189 ~~l--~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~w---p~~~~v~ 232 (243)
T 3mbr_X 189 QAL--VPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRW---PMLYEIR 232 (243)
T ss_dssp GGG--STTTTSCCCTTSSCEEEEEEETTTTEEEEEETTC---SEEEEEE
T ss_pred CcC--ccccccccCCcCCceEEEEEcCCCCEEEEECCCC---CcEEEEE
Confidence 421 000000 000112478899988888775444 4555544
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.034 Score=56.55 Aligned_cols=160 Identities=17% Similarity=0.037 Sum_probs=91.6
Q ss_pred ceeEeecCCCCCCCCeeeeecCC--CC---CcccceeeCC--CCCeEEEEeeccccccccCCceeEEEEEcCCCceeecc
Q 005240 6 GIGIHRLLPDDSLGPEKEVHGYP--DG---AKINFVSWSP--DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLF 78 (706)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~i~~~~--~~---~~~~~~~~SP--DG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt 78 (706)
.|++.+++. .+++.+++.-.. .. -......+.+ ||+.-.|+.+.. ......+||.++.+++..+.+.
T Consensus 84 ~I~~~d~~~--~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~----~~~s~ielf~~d~~~~~~~~~~ 157 (355)
T 3sre_A 84 KILLMDLNE--KEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHP----GSSSTVEVFKFQEEEKSLLHLK 157 (355)
T ss_dssp EEEEEETTS--SSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECS----TTCCEEEEEEEETTTTEEEEEE
T ss_pred eEEEEecCC--CCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECC----CCCCeEEEEEEECCCCEEEEEe
Confidence 377878764 335666654211 11 1334445544 677666777632 1245577898988777666664
Q ss_pred cCCCccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccce
Q 005240 79 ESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQ 158 (706)
Q Consensus 79 ~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 158 (706)
...+..++. ..+....+||+. +++...--.. + .+. ..+ .+.....+.
T Consensus 158 ~~~g~~~~~-pND~~v~~~G~f-yvt~~~~ftd------------------~------~~~------~~e-~~~~~~~g~ 204 (355)
T 3sre_A 158 TIRHKLLPS-VNDIVAVGPEHF-YATNDHYFID------------------P------YLK------SWE-MHLGLAWSF 204 (355)
T ss_dssp EECCTTCSS-EEEEEEEETTEE-EEEESCSCSS------------------H------HHH------HHH-HHTTCCCEE
T ss_pred ccccCCCCC-CceEEEeCCCCE-EecCCcEeCC------------------c------ccc------cch-hhccCCccE
Confidence 433333332 567888999984 4442110000 0 000 000 000113478
Q ss_pred EEEEccCCCceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecC
Q 005240 159 LVLGSLDGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD 217 (706)
Q Consensus 159 l~~~~l~g~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 217 (706)
||.++. ++.+.+..+ .....++|||||+.|++..... ..|++|+++
T Consensus 205 vyr~d~-~~~~~~~~~l~~pNGia~spDg~~lYvadt~~------------~~I~~~~~~ 251 (355)
T 3sre_A 205 VTYYSP-NDVRVVAEGFDFANGINISPDGKYVYIAELLA------------HKIHVYEKH 251 (355)
T ss_dssp EEEECT-TCCEEEEEEESSEEEEEECTTSSEEEEEEGGG------------TEEEEEEEC
T ss_pred EEEEEC-CeEEEeecCCcccCcceECCCCCEEEEEeCCC------------CeEEEEEEC
Confidence 999987 356655544 5677999999999999887653 589999886
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.12 Score=52.89 Aligned_cols=153 Identities=20% Similarity=0.207 Sum_probs=79.5
Q ss_pred ceEEEEccCCCceecC------CC-ceEeeeeeCCC---CcEEEEEeec-cCcccccccccccceEEEEecCCC-----e
Q 005240 157 AQLVLGSLDGTAKDFG------TP-AVYTAVEPSPD---QKYVLITSMH-RPYSYKVPCARFSQKVQVWTTDGK-----L 220 (706)
Q Consensus 157 ~~l~~~~l~g~~~~lt------~~-~~~~~~~~SpD---G~~i~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~-----~ 220 (706)
+.|++++.+|+ +.+. .+ .....++++|| +.+|++.... .... .....|.++++++. .
T Consensus 49 g~I~~~d~~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~------~~~~~v~r~~~~~~~~~~~~ 121 (354)
T 3a9g_A 49 GRLVLISPSGK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGG------HIRNRVIRGRLDGSTFKLKE 121 (354)
T ss_dssp TEEEEECSSCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGG------CEEEEEEEEEECSSSCCEEE
T ss_pred CEEEEEeCCCc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCC------CcceEEEEEEECCCCcCcCc
Confidence 46777766664 3221 22 45678999998 7788766542 1100 00147888887754 1
Q ss_pred eEEccc-CCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCcc---ccCccceeeeecCCCCCCC-------
Q 005240 221 VRELCD-LPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANV---EVSPRDIIYTQPAEPAEGE------- 289 (706)
Q Consensus 221 ~~~l~~-~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~---~~~~~~~l~~~d~~~~~~~------- 289 (706)
.+.+.. .+... .+....+.|.|||. ||+..- +.+.... .....+.|++++. ++.
T Consensus 122 ~~~l~~~~~~~~---------~h~~~~l~~~pDG~--Lyvt~G-~~~~~~~~~d~~~~~G~I~ri~~---dG~~p~~npf 186 (354)
T 3a9g_A 122 VKTLIDGIPGAY---------IHNGGRIRFGPDGM--LYITTG-DAADPRLAQDLSSLAGKILRVDE---EGRPPADNPF 186 (354)
T ss_dssp EEEEEEEEECCS---------SCCCCCEEECTTSC--EEEECC-CTTCGGGGTCTTCCSSEEEEECT---TSCCCTTSSS
T ss_pred cEEEEEcCCCCC---------CcCCceEEECCCCc--EEEEEC-CCCCCccccCCCCCCeEEEEEcC---CCCCCCCCCC
Confidence 222222 11100 02234789999995 776532 2211110 1123457888887 443
Q ss_pred -CceEEeecccccccceecCCCceEEEEeeccccceEEEEEcC
Q 005240 290 -KPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCP 331 (706)
Q Consensus 290 -~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~ 331 (706)
..+.+...-.....++|.|+...|++..........|.++..
T Consensus 187 ~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~ 229 (354)
T 3a9g_A 187 PNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILK 229 (354)
T ss_dssp TTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECT
T ss_pred CCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecC
Confidence 223333334456678899954445554433333345666653
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 706 | ||||
| d1mpxa2 | 381 | c.69.1.21 (A:24-404) Alpha-amino acid ester hydrol | 2e-10 | |
| d1wb4a1 | 273 | c.69.1.2 (A:803-1075) Feruloyl esterase domain of | 8e-10 | |
| d2b9va2 | 385 | c.69.1.21 (A:50-434) Alpha-amino acid ester hydrol | 3e-09 | |
| d1xfda2 | 258 | c.69.1.24 (A:592-849) Dipeptidyl aminopeptidase-li | 4e-09 | |
| d2d81a1 | 318 | c.69.1.37 (A:21-338) Polyhydroxybutyrate depolymer | 1e-07 | |
| d2gzsa1 | 265 | c.69.1.38 (A:41-305) Enterobactin and salmochelin | 7e-07 | |
| d2bgra2 | 258 | c.69.1.24 (A:509-766) Dipeptidyl peptidase IV/CD26 | 9e-07 | |
| d3c8da2 | 246 | c.69.1.2 (A:151-396) Enterochelin esterase, cataly | 2e-05 | |
| d1sfra_ | 288 | c.69.1.3 (A:) Antigen 85a {Mycobacterium tuberculo | 5e-05 | |
| d1r88a_ | 267 | c.69.1.3 (A:) Antigen pt51/mpb51 {Mycobacterium tu | 7e-05 | |
| d2hqsa1 | 269 | b.68.4.1 (A:163-431) TolB, C-terminal domain {Esch | 9e-05 | |
| d2hu7a2 | 260 | c.69.1.33 (A:322-581) Acylamino-acid-releasing enz | 1e-04 | |
| d1pv1a_ | 299 | c.69.1.34 (A:) Hypothetical esterase YJL068C {Bake | 2e-04 | |
| d1dqza_ | 280 | c.69.1.3 (A:) Antigen 85c {Mycobacterium tuberculo | 2e-04 | |
| d1qfma2 | 280 | c.69.1.4 (A:431-710) Prolyl oligopeptidase, C-term | 5e-04 | |
| d1ju3a2 | 347 | c.69.1.21 (A:5-351) Bacterial cocaine esterase N-t | 0.001 | |
| d1jjfa_ | 255 | c.69.1.2 (A:) Feruloyl esterase domain of the cell | 0.002 |
| >d1mpxa2 c.69.1.21 (A:24-404) Alpha-amino acid ester hydrolase {Xanthomonas citri [TaxId: 346]} Length = 381 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Xanthomonas citri [TaxId: 346]
Score = 61.3 bits (147), Expect = 2e-10
Identities = 25/182 (13%), Positives = 53/182 (29%), Gaps = 18/182 (9%)
Query: 466 QITNFPHPYPTLAS-LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDY 524
IT P ++ K + +DGV L + LP G P + P D
Sbjct: 7 DITGKPFVAADASNDYIKREVMIPMRDGVKLHTVIVLPKG-----AKNAPIVLTRTPYDA 61
Query: 525 KSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGP--------SIPIIGEGDKLPND 576
+ R + + +F+ + + ++ + P +
Sbjct: 62 ----SGRTERLASPHMKDLLSAGDDVFVEGGYIRVFQDVRGKYGSEGDYVMTRPLRGPLN 117
Query: 577 RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 636
+ A ++ +V+ ++ + G SY F L + + S
Sbjct: 118 PSEVDHATDAWDTIDWLVKNVSESNGKVGMIGSSYEGFTVVMALTNPHPALKVAVPESPM 177
Query: 637 YN 638
+
Sbjct: 178 ID 179
|
| >d1wb4a1 c.69.1.2 (A:803-1075) Feruloyl esterase domain of the cellulosomal xylanase y {Clostridium thermocellum [TaxId: 1515]} Length = 273 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Feruloyl esterase domain of the cellulosomal xylanase y species: Clostridium thermocellum [TaxId: 1515]
Score = 58.3 bits (139), Expect = 8e-10
Identities = 29/191 (15%), Positives = 53/191 (27%), Gaps = 6/191 (3%)
Query: 470 FPHPYPTLASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDA 529
+ +P P + K Y +G + +YLP GYD +K + +
Sbjct: 17 YLNPCPQAGRIVK--ETYTGING-TKSLNVYLPYGYDPNK--KYNIFYLMHGGGENENTI 71
Query: 530 AGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAA 589
N L L G + + + + A
Sbjct: 72 FSNDVKLQNILDHAIMNGELEPLIVVTPTFNGGNCTAQNFYQEFRQNVIPFVESKYSTYA 131
Query: 590 VEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQAE 649
+ A GG + G T +++ + + SG Y +P +A
Sbjct: 132 ESTTPQGIAASRMHRGFGGFAMGGLTTWYVMVNCLDYVAYFMPLSGDYWYGNSPQ-DKAN 190
Query: 650 RFFDALKGHGA 660
+A+ G
Sbjct: 191 SIAEAINRSGL 201
|
| >d2b9va2 c.69.1.21 (A:50-434) Alpha-amino acid ester hydrolase {Acetobacter pasteurianus [TaxId: 438]} Length = 385 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Acetobacter pasteurianus [TaxId: 438]
Score = 57.4 bits (137), Expect = 3e-09
Identities = 23/174 (13%), Positives = 43/174 (24%), Gaps = 16/174 (9%)
Query: 473 PYPTLASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQ 532
P K + +DGV L + +P P L P +
Sbjct: 19 PTDQQRDYIKREVMVPMRDGVKLYTVIVIPKN-----ARNAPILLTRTP---YNAKGRAN 70
Query: 533 VRGSPNEFSGMTPTSSLIFLARRFAVLA--------GPSIPIIGEGDKLPNDRFVEQLVS 584
+ + P +F+ + + ++ P + +
Sbjct: 71 RVPNALTMREVLPQGDDVFVEGGYIRVFQDIRGKYGSQGDYVMTRPPHGPLNPTKTDETT 130
Query: 585 SAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYN 638
A V+ +V R+ + G SY F L S +
Sbjct: 131 DAWDTVDWLVHNVPESNGRVGMTGSSYEGFTVVMALLDPHPALKVAAPESPMVD 184
|
| >d1xfda2 c.69.1.24 (A:592-849) Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: DPP6 catalytic domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.9 bits (133), Expect = 4e-09
Identities = 35/257 (13%), Positives = 65/257 (25%), Gaps = 65/257 (25%)
Query: 491 DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLI 550
D L + P + + P L + +F +++
Sbjct: 11 DDYNLPMQILKPATFTDTT--HYPLLLVVDG--------TPGSQSVAEKFEVSWE--TVM 58
Query: 551 FLARRFAVLAGPSIPIIGEGDKLPND---RFVEQLVSSAEAAVEEVVRRGVADPSRIAVG 607
+ V+ +G KL ++ R AV +++ D +R+AV
Sbjct: 59 VSSHGAVVVKCDGRGSGFQGTKLLHEVRRRLGLLEEKDQMEAVRTMLKEQYIDRTRVAVF 118
Query: 608 GHSYGAFMTAHLLAHAP----HLFCCGIARSGSYNKTLTPFGF----------------- 646
G YG +++ ++L F CG A S + L F
Sbjct: 119 GKDYGGYLSTYILPAKGENQGQTFTCGSALSPITDFKLYASAFSERYLGLHGLDNRAYEM 178
Query: 647 -----------------------------QAERFFDALKGHGALSRLVLLPFEHHVYAAR 677
L A L + P E H + +
Sbjct: 179 TKVAHRVSALEEQQFLIIHPTADEKIHFQHTAELITQLIRGKANYSLQIYPDESHYFTSS 238
Query: 678 ENVMHVIWETDRWLQKY 694
H+ + +
Sbjct: 239 SLKQHLYRSIINFFVEC 255
|
| >d2d81a1 c.69.1.37 (A:21-338) Polyhydroxybutyrate depolymerase {Penicillium funiculosum [TaxId: 28572]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PHB depolymerase-like domain: Polyhydroxybutyrate depolymerase species: Penicillium funiculosum [TaxId: 28572]
Score = 51.6 bits (123), Expect = 1e-07
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 599 ADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIA 632
+P+ ++V G + G +M A L +F G
Sbjct: 8 VNPNSVSVSGLASGGYMAAQLGVAYSDVFNVGFG 41
|
| >d2gzsa1 c.69.1.38 (A:41-305) Enterobactin and salmochelin hydrolase IroE {Escherichia coli [TaxId: 562]} Length = 265 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: IroE-like domain: Enterobactin and salmochelin hydrolase IroE species: Escherichia coli [TaxId: 562]
Score = 48.8 bits (115), Expect = 7e-07
Identities = 27/249 (10%), Positives = 50/249 (20%), Gaps = 50/249 (20%)
Query: 483 EMIKYQRKDGV-PLTATLYLPPGYDQSKDGPLPCLFWAYPE---DYKSKDAAGQV-RGSP 537
+ DG +P + P L+ D + Q+ +P
Sbjct: 14 SATSFDSVDGTRHYRVWTAVPNTTAPAS--GYPILYMLDGNAVMDRLDDELLKQLSEKTP 71
Query: 538 NEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEG-----DKLPNDRFVEQLVSSAEAAVEE 592
+ ++L F A P+ + +
Sbjct: 72 PVIVAVGYQTNLPFDLNSRAYDYTPAAESRKTDLHSGRFSRKSGGSNNFRQLLETRIAPK 131
Query: 593 VVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGF------ 646
V + D R + GHSYG + + + S S +
Sbjct: 132 VEQGLNIDRQRRGLWGHSYGGLFVLDSWLSSSYFRSY-YSASPSLGRGYDALLSRVTAVE 190
Query: 647 -------------------------------QAERFFDALKGHGALSRLVLLPFEHHVYA 675
+ LK G + P H
Sbjct: 191 PLQFCTKHLAIMEGSATQGDNRETHAVGVLSKIHTTLTILKDKGVNAVFWDFPNLGHGPM 250
Query: 676 ARENVMHVI 684
+ +
Sbjct: 251 FNASFRQAL 259
|
| >d2bgra2 c.69.1.24 (A:509-766) Dipeptidyl peptidase IV/CD26, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: DPP6 catalytic domain-like domain: Dipeptidyl peptidase IV/CD26, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Score = 48.7 bits (114), Expect = 9e-07
Identities = 42/264 (15%), Positives = 74/264 (28%), Gaps = 65/264 (24%)
Query: 482 KEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFS 541
+ + + + + LPP +D+SK P L Y A + + F
Sbjct: 3 SKKLDFIILNETKFWYQMILPPHFDKSK--KYPLLLDVY--------AGPCSQKADTVFR 52
Query: 542 GMTPTSSLIFLARRFAVLAGPSIPIIGEG----DKLPNDRFVEQLVSSAEAAVEEVVRRG 597
T + ++A G N R V A + + G
Sbjct: 53 LNWAT---YLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMG 109
Query: 598 VADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGF----------- 646
D RIA+ G SYG ++T+ +L +F CGIA + +
Sbjct: 110 FVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPTPE 169
Query: 647 -------------------------------------QAERFFDALKGHGALSRLVLLPF 669
Q+ + AL G + +
Sbjct: 170 DNLDHYRNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWYTD 229
Query: 670 EHHVYAARENVMHVIWETDRWLQK 693
E H A+ H+ ++++
Sbjct: 230 EDHGIASSTAHQHIYTHMSHFIKQ 253
|
| >d3c8da2 c.69.1.2 (A:151-396) Enterochelin esterase, catalytic domain {Shigella flexneri 2a str. 2457T [TaxId: 198215]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Enterochelin esterase, catalytic domain species: Shigella flexneri 2a str. 2457T [TaxId: 198215]
Score = 44.5 bits (104), Expect = 2e-05
Identities = 27/191 (14%), Positives = 47/191 (24%), Gaps = 14/191 (7%)
Query: 475 PTLASLQKEMIKYQRK-DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQV 533
P + + I ++ + ++ P E + V
Sbjct: 8 PQAPEIPAKEIIWKSERLKNSRRVWIFTTGDVT---AEERPLAVLLDGEFWAQSMPVWPV 64
Query: 534 RGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEV 593
S + P VL + N F + V+ +
Sbjct: 65 LTSLTHRQQLPPAV---------YVLIDAIDTTHRAHELPCNADFWLAVQQELLPLVKVI 115
Query: 594 VRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQAERFFD 653
R V G S+G + H P F C +++SGSY +
Sbjct: 116 APFSD-RADRTVVAGQSFGGLSALYAGLHWPERFGCVLSQSGSYWWPHRGGQQEGVLLEK 174
Query: 654 ALKGHGALSRL 664
G + L
Sbjct: 175 LKAGEVSAEGL 185
|
| >d1sfra_ c.69.1.3 (A:) Antigen 85a {Mycobacterium tuberculosis [TaxId: 1773]} Length = 288 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen 85a species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 43.4 bits (101), Expect = 5e-05
Identities = 16/116 (13%), Positives = 30/116 (25%), Gaps = 2/116 (1%)
Query: 586 AEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFG 645
+ P+ AV G S A L + P F A SG + +
Sbjct: 103 TSELPGWLQANRHVKPTGSAVVGLSMAASSALTLAIYHPQQFVYAGAMSGLLD--PSQAM 160
Query: 646 FQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCLSNTSD 701
G + + P E + + +++V + +
Sbjct: 161 GPTLIGLAMGDAGGYKASDMWGPKEDPAWQRNDPLLNVGKLIANNTRVWVYCGNGK 216
|
| >d1r88a_ c.69.1.3 (A:) Antigen pt51/mpb51 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 267 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen pt51/mpb51 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 43.0 bits (100), Expect = 7e-05
Identities = 21/169 (12%), Positives = 48/169 (28%), Gaps = 2/169 (1%)
Query: 534 RGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEV 593
P+ + +T +++ LA + + P+ D + + + +
Sbjct: 37 NAGPDVSNWVTAGNAMNTLAGKGISVVAPAGGAYSMYTNWEQDGSKQWDTFLSAELPDWL 96
Query: 594 VRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGFQAERFFD 653
P A G + G + L A P F + SG +
Sbjct: 97 AANRGLAPGGHAAVGAAQGGYGAMALAAFHPDRFGFAGSMSGFLY--PSNTTTNGAIAAG 154
Query: 654 ALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCLSNTSDG 702
+ G + + + + + +H + + S T+ G
Sbjct: 155 MQQFGGVDTNGMWGAPQLGRWKWHDPWVHASLLAQNNTRVWVWSPTNPG 203
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 269 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Score = 42.5 bits (98), Expect = 9e-05
Identities = 34/273 (12%), Positives = 70/273 (25%), Gaps = 22/273 (8%)
Query: 44 RIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIF 103
RIA+ V+ + + ++D + + SP + S W + + L +
Sbjct: 5 RIAYVVQTNGGQFPY----ELRVSDYDGYNQFVVHRSPQPLM-----SPAWSPDGSKLAY 55
Query: 104 TIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163
S R + G Q + ++ +
Sbjct: 56 VTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLA 115
Query: 164 LDGTAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRE 223
+ + T PD + + TS Q T + +
Sbjct: 116 SGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWE---GSQ 172
Query: 224 LCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSP--RDIIYTQ 281
D + D G + + D + V + D ++P +IY+
Sbjct: 173 NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSS 232
Query: 282 PAE--------PAEGEKPEILHKLDLRFRSVSW 306
+G L D + + +W
Sbjct: 233 SQGMGSVLNLVSTDGRFKARLPATDGQVKFPAW 265
|
| >d2hu7a2 c.69.1.33 (A:322-581) Acylamino-acid-releasing enzyme, C-terminal donain {Aeropyrum pernix [TaxId: 56636]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acylamino-acid-releasing enzyme, C-terminal donain domain: Acylamino-acid-releasing enzyme, C-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Score = 42.2 bits (97), Expect = 1e-04
Identities = 7/48 (14%), Positives = 14/48 (29%)
Query: 647 QAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKY 694
R L G ++P H E+ + ++ +L
Sbjct: 210 PLLRLMGELLARGKTFEAHIIPDAGHAINTMEDAVKILLPAVFFLATQ 257
|
| >d1pv1a_ c.69.1.34 (A:) Hypothetical esterase YJL068C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hypothetical esterase YJL068C domain: Hypothetical esterase YJL068C species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.8 bits (97), Expect = 2e-04
Identities = 20/168 (11%), Positives = 46/168 (27%), Gaps = 22/168 (13%)
Query: 492 GVPLTATLYLPPGYDQ---SKDGPLPCLFW---------------AYPEDYKSKDAAGQV 533
+ +YLP Y ++ +P +F+ + A
Sbjct: 25 KTSMNVNIYLPKHYYAQDFPRNKRIPTVFYLSGLTCTPDNASEKAFWQFQADKYGFAIVF 84
Query: 534 RGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEV 593
+ + + + A + D ++L + ++ +
Sbjct: 85 PDTSPRGDEVANDPEGSWDFGQGAGFYLNATQEPYAQHYQMYDYIHKELPQTLDSHFNKN 144
Query: 594 VRRGVADPSRIAVGGHS---YGAFMTAHLLAHAPHLFCCGIARSGSYN 638
+ +A+ GHS YGA L ++ + A + N
Sbjct: 145 GDVKLDFLDNVAITGHSMGGYGAICGY-LKGYSGKRYKSCSAFAPIVN 191
|
| >d1dqza_ c.69.1.3 (A:) Antigen 85c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen 85c species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 41.4 bits (96), Expect = 2e-04
Identities = 13/116 (11%), Positives = 28/116 (24%), Gaps = 2/116 (1%)
Query: 586 AEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFG 645
+ P+ A G S L A+ P F + SG N +
Sbjct: 98 TREMPAWLQANKGVSPTGNAAVGLSMSGGSALILAAYYPQQFPYAASLSGFLN--PSESW 155
Query: 646 FQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCLSNTSD 701
+ G + + P + + ++ + + +
Sbjct: 156 WPTLIGLAMNDSGGYNANSMWGPSSDPAWKRNDPMVQIPRLVANNTRIWVYCGNGT 211
|
| >d1qfma2 c.69.1.4 (A:431-710) Prolyl oligopeptidase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Prolyl oligopeptidase, C-terminal domain domain: Prolyl oligopeptidase, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Score = 40.2 bits (92), Expect = 5e-04
Identities = 10/38 (26%), Positives = 13/38 (34%), Gaps = 2/38 (5%)
Query: 483 EMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAY 520
I Y KDG + + G DG P + Y
Sbjct: 8 VQIFYPSKDGTKIPMFIVHKKGIK--LDGSHPAFLYGY 43
|
| >d1ju3a2 c.69.1.21 (A:5-351) Bacterial cocaine esterase N-terminal domain {Rhodococcus sp. mb1 [TaxId: 51612]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Bacterial cocaine esterase N-terminal domain species: Rhodococcus sp. mb1 [TaxId: 51612]
Score = 39.4 bits (90), Expect = 0.001
Identities = 26/150 (17%), Positives = 44/150 (29%), Gaps = 22/150 (14%)
Query: 490 KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSL 549
+DGV L LY P DGP+P L P + F+ T +++
Sbjct: 13 RDGVRLAVDLYRPDA-----DGPVPVLLVRNP------------YDKFDVFAWSTQSTNW 55
Query: 550 IFLARR-FAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGG 608
+ R +AV+ G + AE + ++ + D + + G
Sbjct: 56 LEFVRDGYAVVI---QDTRGLFASEGEFVPHVDDEADAEDTLSWILEQAWCDG-NVGMFG 111
Query: 609 HSYGAFMTAHLLAHAPHLFCCGIARSGSYN 638
SY S +
Sbjct: 112 VSYLGVTQWQAAVSGVGGLKAIAPSMASAD 141
|
| >d1jjfa_ c.69.1.2 (A:) Feruloyl esterase domain of the cellulosomal xylanase z {Clostridium thermocellum [TaxId: 1515]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Feruloyl esterase domain of the cellulosomal xylanase z species: Clostridium thermocellum [TaxId: 1515]
Score = 38.1 bits (87), Expect = 0.002
Identities = 31/246 (12%), Positives = 59/246 (23%), Gaps = 35/246 (14%)
Query: 468 TNFPHPYPTLASLQKEMIKYQ-RKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKS 526
+ + + Q I Y A +YLPPGY + K L+ +
Sbjct: 8 SGYDQVRNGVPRGQVVNISYFSTATNSTRPARVYLPPGYSKDK--KYSVLYLLHGIGGSE 65
Query: 527 KDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSA 586
D + + I + P I +G + + L+
Sbjct: 66 NDWFEGGGRAN-VIADNLIAEGKIKPLIIVTPNTNAAGPGIADGYENFTKDLLNSLIPYI 124
Query: 587 EAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLTPFGF 646
E+ D A+ G S G + ++ F S + N F
Sbjct: 125 ES-----NYSVYTDREHRAIAGLSMGGGQSFNIGLTNLDKFAYIGPISAAPNTYPNERLF 179
Query: 647 --------------------------QAERFFDALKGHGALSRLVLLPFEHHVYAARENV 680
+R + + L+ H + +
Sbjct: 180 PDGGKAAREKLKLLFIACGTNDSLIGFGQRVHEYCVANNINHVYWLIQGGGHDFNVWKPG 239
Query: 681 MHVIWE 686
+ +
Sbjct: 240 LWNFLQ 245
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 706 | |||
| d1xfda2 | 258 | Dipeptidyl aminopeptidase-like protein 6, DPP6, C- | 99.92 | |
| d2bgra2 | 258 | Dipeptidyl peptidase IV/CD26, C-terminal domain {P | 99.92 | |
| d2hu7a2 | 260 | Acylamino-acid-releasing enzyme, C-terminal donain | 99.9 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.88 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.88 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.87 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.86 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.85 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 99.84 | |
| d1qfma2 | 280 | Prolyl oligopeptidase, C-terminal domain {Pig (Sus | 99.83 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.82 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.78 | |
| d1vlqa_ | 322 | Acetyl xylan esterase TM0077 {Thermotoga maritima | 99.76 | |
| d1jkma_ | 358 | Carboxylesterase {Bacillus subtilis, brefeldin A e | 99.74 | |
| d1lzla_ | 317 | Heroin esterase {Rhodococcus sp. [TaxId: 1831]} | 99.74 | |
| d1l7aa_ | 318 | Cephalosporin C deacetylase {Bacillus subtilis [Ta | 99.73 | |
| d2jbwa1 | 360 | 2,6-dihydropseudooxynicotine hydrolase {Arthrobact | 99.73 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 99.72 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.72 | |
| d1jjfa_ | 255 | Feruloyl esterase domain of the cellulosomal xylan | 99.72 | |
| d1mpxa2 | 381 | Alpha-amino acid ester hydrolase {Xanthomonas citr | 99.7 | |
| d1dina_ | 233 | Dienelactone hydrolase {Pseudomonas sp., B13 [TaxI | 99.69 | |
| d1jfra_ | 260 | Lipase {Streptomyces exfoliatus [TaxId: 1905]} | 99.68 | |
| d1u4na_ | 308 | Carboxylesterase {Alicyclobacillus acidocaldarius | 99.67 | |
| d1jjia_ | 311 | Carboxylesterase {Archaeon Archaeoglobus fulgidus | 99.66 | |
| d3c8da2 | 246 | Enterochelin esterase, catalytic domain {Shigella | 99.65 | |
| d1ju3a2 | 347 | Bacterial cocaine esterase N-terminal domain {Rhod | 99.65 | |
| d2fuka1 | 218 | XC6422 protein {Xanthomonas campestris [TaxId: 339 | 99.65 | |
| d2b9va2 | 385 | Alpha-amino acid ester hydrolase {Acetobacter past | 99.63 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.61 | |
| d1wb4a1 | 273 | Feruloyl esterase domain of the cellulosomal xylan | 99.6 | |
| d1sfra_ | 288 | Antigen 85a {Mycobacterium tuberculosis [TaxId: 17 | 99.6 | |
| d2h1ia1 | 202 | Carboxylesterase {Bacillus cereus [TaxId: 1396]} | 99.59 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.58 | |
| d2i3da1 | 218 | Hypothetical protein Atu1826 {Agrobacterium tumefa | 99.58 | |
| d2gzsa1 | 265 | Enterobactin and salmochelin hydrolase IroE {Esche | 99.57 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.57 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.53 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.52 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.51 | |
| d1ufoa_ | 238 | Hypothetical protein TT1662 {Thermus thermophilus | 99.5 | |
| d3b5ea1 | 209 | Uncharacterized protein Mll8374 {Mesorhizobium lot | 99.48 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.48 | |
| d2pbla1 | 261 | Uncharacterized protein TM1040_2492 {Silicibacter | 99.48 | |
| d1thta_ | 302 | Myristoyl-ACP-specific thioesterase {Vibrio harvey | 99.48 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.47 | |
| d1lnsa3 | 405 | X-Prolyl dipeptidyl aminopeptidase PepX, middle do | 99.44 | |
| d1pv1a_ | 299 | Hypothetical esterase YJL068C {Baker's yeast (Sacc | 99.44 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.43 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.42 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.42 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.4 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.4 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.39 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.39 | |
| d1fj2a_ | 229 | Acyl protein thioesterase 1 {Human (Homo sapiens) | 99.38 | |
| d1r88a_ | 267 | Antigen pt51/mpb51 {Mycobacterium tuberculosis [Ta | 99.38 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.37 | |
| d1dqza_ | 280 | Antigen 85c {Mycobacterium tuberculosis [TaxId: 17 | 99.35 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.35 | |
| d2r8ba1 | 203 | Uncharacterized protein Atu2452 {Agrobacterium tum | 99.33 | |
| d1imja_ | 208 | Ccg1/TafII250-interacting factor B (Cib) {Human (H | 99.32 | |
| d1vkha_ | 263 | Putative serine hydrolase Ydr428c {Baker's yeast ( | 99.32 | |
| d1mtza_ | 290 | Tricorn interacting factor F1 {Archaeon Thermoplas | 99.31 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.29 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.28 | |
| d1q0ra_ | 297 | Aclacinomycin methylesterase RdmC {Streptomyces pu | 99.28 | |
| d1k8qa_ | 377 | Gastric lipase {Dog (Canis familiaris) [TaxId: 961 | 99.27 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.26 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.25 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.23 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.22 | |
| d1a88a_ | 275 | Chloroperoxidase L {Streptomyces lividans [TaxId: | 99.2 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.18 | |
| d1auoa_ | 218 | Carboxylesterase {Pseudomonas fluorescens [TaxId: | 99.18 | |
| d1a8qa_ | 274 | Bromoperoxidase A1 {Streptomyces aureofaciens [Tax | 99.18 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.18 | |
| d1zd3a2 | 322 | Mammalian epoxide hydrolase, C-terminal domain {Hu | 99.15 | |
| d1tqha_ | 242 | Carboxylesterase Est {Bacillus stearothermophilus | 99.15 | |
| d1c4xa_ | 281 | 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolas | 99.14 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.13 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.11 | |
| d1brta_ | 277 | Bromoperoxidase A2 {Streptomyces aureofaciens [Tax | 99.11 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.09 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.08 | |
| d2rhwa1 | 283 | 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolas | 99.07 | |
| d1j1ia_ | 268 | Meta cleavage compound hydrolase CarC {Janthinobac | 99.07 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.06 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 99.05 | |
| d1xkla_ | 258 | Salicylic acid-binding protein 2 (SABP2) {Common t | 99.05 | |
| d1hkha_ | 279 | Gamma-lactamase {Aureobacterium sp. [TaxId: 51671] | 99.05 | |
| d1bn7a_ | 291 | Haloalkane dehalogenase {Rhodococcus sp. [TaxId: 1 | 99.04 | |
| d1va4a_ | 271 | Arylesterase {Pseudomonas fluorescens [TaxId: 294] | 99.04 | |
| d3c70a1 | 256 | Hydroxynitrile lyase {Rubber tree (Hevea brasilien | 99.03 | |
| d1b6ga_ | 310 | Haloalkane dehalogenase {Xanthobacter autotrophicu | 99.02 | |
| d1uk8a_ | 271 | Meta-cleavage product hydrolase CumD {Pseudomonas | 99.01 | |
| d1azwa_ | 313 | Proline iminopeptidase {Xanthomonas campestris, pv | 99.0 | |
| d1uxoa_ | 186 | Hypothetical protein YdeN {Bacillus subtilis [TaxI | 98.99 | |
| d1a8sa_ | 273 | Chloroperoxidase F {Pseudomonas fluorescens [TaxId | 98.99 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.98 | |
| d1ehya_ | 293 | Bacterial epoxide hydrolase {Agrobacterium radioba | 98.98 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 98.93 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 98.91 | |
| d1r3da_ | 264 | Hypothetical protein VC1974 {Vibrio cholerae [TaxI | 98.9 | |
| d1llfa_ | 534 | Type-B carboxylesterase/lipase {Candida cylindrace | 98.82 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 98.81 | |
| d2h7ca1 | 532 | Mammalian carboxylesterase (liver carboxylesterase | 98.8 | |
| d1wm1a_ | 313 | Proline aminopeptidase {Serratia marcescens [TaxId | 98.78 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 98.75 | |
| d1qe3a_ | 483 | Thermophilic para-nitrobenzyl esterase (PNB estera | 98.75 | |
| d1thga_ | 544 | Type-B carboxylesterase/lipase {Fungus (Geotrichum | 98.75 | |
| d1pjaa_ | 268 | Palmitoyl protein thioesterase 2 {Human (Homo sapi | 98.72 | |
| d2bcea_ | 579 | Bile-salt activated lipase (cholesterol esterase) | 98.69 | |
| d2ha2a1 | 542 | Acetylcholinesterase {Mouse (Mus musculus) [TaxId: | 98.69 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 98.68 | |
| d1ea5a_ | 532 | Acetylcholinesterase {Pacific electric ray (Torped | 98.68 | |
| d1ukca_ | 517 | Esterase EstA {Aspergillus niger [TaxId: 5061]} | 98.68 | |
| d1qlwa_ | 318 | A novel bacterial esterase {Alcaligenes sp. [TaxId | 98.65 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.65 | |
| d1p0ia_ | 526 | Butyryl cholinesterase {Human (Homo sapiens) [TaxI | 98.64 | |
| d1mj5a_ | 298 | Haloalkane dehalogenase {Sphingomonas paucimobilis | 98.62 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.61 | |
| d1m33a_ | 256 | Biotin biosynthesis protein BioH {Escherichia coli | 98.6 | |
| d1dx4a_ | 571 | Acetylcholinesterase {Fruit fly (Drosophila melano | 98.6 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.59 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.53 | |
| d1cvla_ | 319 | Lipase {Chromobacterium viscosum [TaxId: 42739]} | 98.51 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.49 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.45 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 98.44 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 98.42 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.38 | |
| d1tcaa_ | 317 | Triacylglycerol lipase {Yeast (Candida antarctica) | 98.36 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 98.36 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 98.33 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 98.29 | |
| d1ex9a_ | 285 | Lipase {Pseudomonas aeruginosa [TaxId: 287]} | 98.28 | |
| d1qo7a_ | 394 | Bacterial epoxide hydrolase {Aspergillus niger [Ta | 98.26 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 98.25 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.22 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.19 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.18 | |
| d2d81a1 | 318 | Polyhydroxybutyrate depolymerase {Penicillium funi | 98.16 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 98.15 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 98.12 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 98.12 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.11 | |
| d1ispa_ | 179 | Lipase A {Bacillus subtilis [TaxId: 1423]} | 98.1 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 98.07 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 98.0 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 97.98 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 97.89 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 97.87 | |
| d2dsta1 | 122 | Hypothetical protein TTHA1544 {Thermus thermophilu | 97.8 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 97.78 | |
| d1jmkc_ | 230 | Surfactin synthetase, SrfA {Bacillus subtilis [Tax | 97.77 | |
| d2b61a1 | 357 | Homoserine O-acetyltransferase {Haemophilus influe | 97.76 | |
| d1xkta_ | 286 | Fatty acid synthase {Human (Homo sapiens) [TaxId: | 97.44 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 97.43 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 97.39 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 97.38 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 97.1 | |
| d2vata1 | 376 | Acetyl-CoA:deacetylcephalosporin C acetyltransfera | 97.1 | |
| d2h7xa1 | 283 | Picromycin polyketide synthase {Streptomyces venez | 97.08 | |
| d1ei9a_ | 279 | Palmitoyl protein thioesterase 1 {Cow (Bos taurus) | 97.02 | |
| d2pl5a1 | 362 | Homoserine O-acetyltransferase {Leptospira interro | 96.95 | |
| d1rp1a2 | 337 | Pancreatic lipase, N-terminal domain {Dog (Canis f | 96.93 | |
| d1bu8a2 | 338 | Pancreatic lipase, N-terminal domain {Rat (Rattus | 96.5 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 96.43 | |
| d1mo2a_ | 255 | Erythromycin polyketide synthase {Saccharopolyspor | 95.81 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 95.55 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 95.43 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 95.37 | |
| d1ku0a_ | 388 | Lipase L1 {Bacillus stearothermophilus [TaxId: 142 | 94.49 | |
| d1ivya_ | 452 | Human 'protective protein', HPP {Human (Homo sapie | 94.43 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 93.27 | |
| g1wht.1 | 409 | Serine carboxypeptidase II {Wheat (Triticum vulgar | 92.34 | |
| d1lgya_ | 265 | Triacylglycerol lipase {Rhizopus niveus [TaxId: 48 | 89.77 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 89.11 | |
| d1tiaa_ | 271 | Triacylglycerol lipase {Penicillium camembertii [T | 88.51 | |
| d1tiba_ | 269 | Triacylglycerol lipase {Thermomyces lanuginosus, f | 88.23 | |
| d1uwca_ | 261 | Feruloyl esterase A {Aspergillus niger [TaxId: 506 | 87.94 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 87.44 | |
| d3tgla_ | 265 | Triacylglycerol lipase {Rhizomucor miehei [TaxId: | 87.19 | |
| d1wpxa1 | 421 | Serine carboxypeptidase II {Baker's yeast (Sacchar | 86.3 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 85.63 | |
| g1gxs.1 | 425 | Hydroxynitrile lyase {Sorghum (Sorghum bicolor) [T | 82.65 | |
| d1ac5a_ | 483 | Serine carboxypeptidase II {Baker's yeast (Sacchar | 80.82 |
| >d1xfda2 c.69.1.24 (A:592-849) Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: DPP6 catalytic domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=3.5e-26 Score=226.26 Aligned_cols=195 Identities=18% Similarity=0.209 Sum_probs=153.1
Q ss_pred cCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCC
Q 005240 490 KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGE 569 (706)
Q Consensus 490 ~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~ 569 (706)
.||.+|+++|++|+++++++ ++|+||++||||... ...+. +. .....+.|+++||+|+++++||+.++
T Consensus 10 ~dg~~l~~~l~~P~~~~~~~--k~Pviv~~HGGp~~~-----~~~~~---~~--~~~~~~~la~~G~~vv~~d~rGs~~~ 77 (258)
T d1xfda2 10 IDDYNLPMQILKPATFTDTT--HYPLLLVVDGTPGSQ-----SVAEK---FE--VSWETVMVSSHGAVVVKCDGRGSGFQ 77 (258)
T ss_dssp ETTEEECCBEEBCSSCCSSS--CEEEEEECCCCTTCC-----CCCCC---CC--CSHHHHHHHTTCCEEECCCCTTCSSS
T ss_pred eCCeEEEEEEEECCCcCCCC--ceeEEEEEcCCcccc-----CcCCC---cC--cchHHHHHhcCCcEEEEecccccccc
Confidence 49999999999999998776 499999999986431 11111 11 11345678899999999999988877
Q ss_pred CCCCCc---hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCC----ceeEEEeccCCCCCCCC
Q 005240 570 GDKLPN---DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH----LFCCGIARSGSYNKTLT 642 (706)
Q Consensus 570 g~~~~~---~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~----~~~a~v~~~~~~d~~~~ 642 (706)
|..+.. ..++...+.|+.++++|+++++.+|++||+|+|+|+||++|++++...++ .|++.+..+++..+...
T Consensus 78 g~~~~~~~~~~~g~~~~~d~~~~i~~l~~~~~id~~ri~v~G~S~GG~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (258)
T d1xfda2 78 GTKLLHEVRRRLGLLEEKDQMEAVRTMLKEQYIDRTRVAVFGKDYGGYLSTYILPAKGENQGQTFTCGSALSPITDFKLY 157 (258)
T ss_dssp HHHHHHTTTTCTTTHHHHHHHHHHHHHHSSSSEEEEEEEEEEETHHHHHHHHCCCCSSSTTCCCCSEEEEESCCCCTTSS
T ss_pred chhHhhhhhccchhHHHHHHHHhhhhhcccccccccceeccccCchHHHHHHHHhcCCcccceeeeeeeccccceeeecc
Confidence 754322 23344668899999999999999999999999999999999999877654 68888888876543210
Q ss_pred ----------------------------------Ccc------------chHHHHHHHHHhCCCcEEEEEeCCCCccCCC
Q 005240 643 ----------------------------------PFG------------FQAERFFDALKGHGALSRLVLLPFEHHVYAA 676 (706)
Q Consensus 643 ----------------------------------~~~------------~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~ 676 (706)
|.. .+.++++++|++.++++++++||+++|.+..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~p~Li~hG~~D~~vp~~~s~~~~~~l~~~~~~~~~~~~p~~~H~~~~ 237 (258)
T d1xfda2 158 ASAFSERYLGLHGLDNRAYEMTKVAHRVSALEEQQFLIIHPTADEKIHFQHTAELITQLIRGKANYSLQIYPDESHYFTS 237 (258)
T ss_dssp BHHHHHHHHCCCSSCCSSTTTTCTHHHHTSCCSCEEEEEEETTCSSSCHHHHHHHHHHHHHTTCCCEEEEETTCCSSCCC
T ss_pred ccccccccccccccchHHhhccchhhhhhhhhcccccccccCCCCCcCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCC
Confidence 000 0334899999999999999999999999987
Q ss_pred cccHHHHHHHHHHHHHHHhc
Q 005240 677 RENVMHVIWETDRWLQKYCL 696 (706)
Q Consensus 677 ~~~~~~~~~~~~~f~~~~l~ 696 (706)
.....++++.+++||+++|+
T Consensus 238 ~~~~~~~~~~~~~f~~~~~~ 257 (258)
T d1xfda2 238 SSLKQHLYRSIINFFVECFR 257 (258)
T ss_dssp HHHHHHHHHHHHHHHTTTTC
T ss_pred CcCHHHHHHHHHHHHHHhhC
Confidence 77778899999999999885
|
| >d2bgra2 c.69.1.24 (A:509-766) Dipeptidyl peptidase IV/CD26, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: DPP6 catalytic domain-like domain: Dipeptidyl peptidase IV/CD26, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.92 E-value=3.4e-25 Score=219.07 Aligned_cols=205 Identities=20% Similarity=0.237 Sum_probs=162.4
Q ss_pred CceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCch-HHHHHHHCCeEE
Q 005240 480 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPT-SSLIFLARRFAV 558 (706)
Q Consensus 480 ~~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~G~~v 558 (706)
+..|.+.+...||+++.++|++|++|+++| ++|+||++||||... . ........ ....++.+||+|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~l~lP~~~~~~k--k~P~iv~~HGGp~~~------~-----~~~~~~~~~~~~~~a~~g~~V 67 (258)
T d2bgra2 1 MPSKKLDFIILNETKFWYQMILPPHFDKSK--KYPLLLDVYAGPCSQ------K-----ADTVFRLNWATYLASTENIIV 67 (258)
T ss_dssp CCEEEEEEEEETTEEEEEEEEECTTCCTTS--CEEEEEECCCCTTCC------C-----CCCCCCCSHHHHHHHTTCCEE
T ss_pred CCceeEEEEEeCCcEEEEEEEECCCcCCCC--CeeEEEEEcCCCCcc------c-----CCCccCcCHHHHHHhcCCcEE
Confidence 357899999999999999999999998876 499999999986421 1 11111222 334566799999
Q ss_pred EEcCCCCcCCCCCCCCc---hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccC
Q 005240 559 LAGPSIPIIGEGDKLPN---DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSG 635 (706)
Q Consensus 559 ~~~~~~~~~g~g~~~~~---~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~ 635 (706)
+..++||+.+++..+.. ..+....+.|+.++++++.++..+|+++|+++|+|+||.++++++..+|++++++++.++
T Consensus 68 ~~~d~rg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~i~i~G~S~GG~~~~~~~~~~~~~~~~~~~~~~ 147 (258)
T d2bgra2 68 ASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAP 147 (258)
T ss_dssp EEECCTTCSSSCHHHHGGGTTCTTSHHHHHHHHHHHHHTTSSSEEEEEEEEEEETHHHHHHHHHHTTTCSCCSEEEEESC
T ss_pred EeecccccCCcchHHHHhhhhhhhhHHHHHHHHHHHHhhhhcccccccccccCcchhhcccccccccCCCcceEEEEeec
Confidence 99999987666543322 234445678889999999999999999999999999999999999999999999999987
Q ss_pred CCCCCCC------------------------------------Ccc------------chHHHHHHHHHhCCCcEEEEEe
Q 005240 636 SYNKTLT------------------------------------PFG------------FQAERFFDALKGHGALSRLVLL 667 (706)
Q Consensus 636 ~~d~~~~------------------------------------~~~------------~~~~~~~~~l~~~~~~~~~~~~ 667 (706)
....... |.. .+.++++++|++.|+++++++|
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~hG~~D~~Vp~~~s~~~~~~l~~~g~~~~~~~~ 227 (258)
T d2bgra2 148 VSRWEYYDSVYTERYMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWY 227 (258)
T ss_dssp CCCGGGSBHHHHHHHHCCCSTTTTHHHHHHSCSGGGGGGGGGSEEEEEEETTCSSSCTHHHHHHHHHHHHHTCCCEEEEE
T ss_pred ccccccccccccchhcccccchhhHHHhhcccccccccccccCChheeeecCCCcccHHHHHHHHHHHHHCCCCEEEEEE
Confidence 6542210 100 1345999999999999999999
Q ss_pred CCCCccCCCcccHHHHHHHHHHHHHHHhcc
Q 005240 668 PFEHHVYAARENVMHVIWETDRWLQKYCLS 697 (706)
Q Consensus 668 ~~~~H~~~~~~~~~~~~~~~~~f~~~~l~~ 697 (706)
|+++|+|........+++.+.+||+++|..
T Consensus 228 ~g~~H~~~~~~~~~~~~~~i~~fl~~~l~~ 257 (258)
T d2bgra2 228 TDEDHGIASSTAHQHIYTHMSHFIKQCFSL 257 (258)
T ss_dssp TTCCTTCCSHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCccHHHHHHHHHHHHHHHhcC
Confidence 999999987777888999999999999853
|
| >d2hu7a2 c.69.1.33 (A:322-581) Acylamino-acid-releasing enzyme, C-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acylamino-acid-releasing enzyme, C-terminal donain domain: Acylamino-acid-releasing enzyme, C-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=99.90 E-value=1.5e-23 Score=207.21 Aligned_cols=199 Identities=17% Similarity=0.185 Sum_probs=160.4
Q ss_pred CceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEE
Q 005240 480 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 559 (706)
Q Consensus 480 ~~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~ 559 (706)
...+.|++++.||.+|+++++.|++- .+|.|+||++|||++.. . ...+ ...++.|+++||+|+
T Consensus 10 ~~~~~v~~~s~dG~~i~~~l~~p~~~----~~~~Pviv~~HGG~~~~------~---~~~~----~~~~~~la~~G~~v~ 72 (260)
T d2hu7a2 10 AGSRLVWVESFDGSRVPTYVLESGRA----PTPGPTVVLVHGGPFAE------D---SDSW----DTFAASLAAAGFHVV 72 (260)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEETTS----CSSEEEEEEECSSSSCC------C---CSSC----CHHHHHHHHHTCEEE
T ss_pred CceEEEEEECCCCCEEEEEEEeCCCC----CCCceEEEEECCCCccC------C---Cccc----cHHHHHHHhhccccc
Confidence 57889999999999999999999762 23589999999986531 1 1111 245788999999999
Q ss_pred EcCCCCcCCCCCCCCc---hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCC
Q 005240 560 AGPSIPIIGEGDKLPN---DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 636 (706)
Q Consensus 560 ~~~~~~~~g~g~~~~~---~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~ 636 (706)
.+++++..++|..+.. ..+....+.|+.++++|+.++. ++.+++|+|+|+||++++.++.++|+.++|++..+|.
T Consensus 73 ~~d~r~~~~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~--~~~~~~i~g~s~gg~~~~~~~~~~~~~~~a~i~~~~~ 150 (260)
T d2hu7a2 73 MPNYRGSTGYGEEWRLKIIGDPCGGELEDVSAAARWARESG--LASELYIMGYSYGGYMTLCALTMKPGLFKAGVAGASV 150 (260)
T ss_dssp EECCTTCSSSCHHHHHTTTTCTTTHHHHHHHHHHHHHHHTT--CEEEEEEEEETHHHHHHHHHHHHSTTSSSEEEEESCC
T ss_pred cceeeeccccccccccccccccchhhhhhhccccccccccc--ccceeeccccccccccccchhccCCcccccccccccc
Confidence 9999877776655332 1234466889999999999874 6789999999999999999999999999999999998
Q ss_pred CCCCC-------------------------------------CCcc------------chHHHHHHHHHhCCCcEEEEEe
Q 005240 637 YNKTL-------------------------------------TPFG------------FQAERFFDALKGHGALSRLVLL 667 (706)
Q Consensus 637 ~d~~~-------------------------------------~~~~------------~~~~~~~~~l~~~~~~~~~~~~ 667 (706)
.+... .|.. .+.++++++|+.+++++++++|
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~liihG~~D~~vp~~~~~~~~~~l~~~~~~~~~~~~ 230 (260)
T d2hu7a2 151 VDWEEMYELSDAAFRNFIEQLTGGSREIMRSRSPINHVDRIKEPLALIHPQNDSRTPLKPLLRLMGELLARGKTFEAHII 230 (260)
T ss_dssp CCHHHHHHTCCHHHHHHHHHHHCSCHHHHHHTCGGGCGGGCCSCEEEEEETTCSSSCSHHHHHHHHHHHHTTCCEEEEEE
T ss_pred hhhhhhhcccccccccccccccccccccccccchhhcccccCCCceeeecccCceecHHHHHHHHHHHHHCCCCeEEEEE
Confidence 76321 0100 1334999999999999999999
Q ss_pred CCCCccCCCcccHHHHHHHHHHHHHHHhcc
Q 005240 668 PFEHHVYAARENVMHVIWETDRWLQKYCLS 697 (706)
Q Consensus 668 ~~~~H~~~~~~~~~~~~~~~~~f~~~~l~~ 697 (706)
||++|.+...++..++++.+++||++||++
T Consensus 231 ~g~~H~~~~~e~~~~~~~~~~~fl~~hl~~ 260 (260)
T d2hu7a2 231 PDAGHAINTMEDAVKILLPAVFFLATQRER 260 (260)
T ss_dssp TTCCSSCCBHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcCCCCCCChHhHHHHHHHHHHHHHHHhcC
Confidence 999999988778889999999999999974
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=1.8e-20 Score=200.18 Aligned_cols=361 Identities=11% Similarity=-0.010 Sum_probs=217.9
Q ss_pred ceeEeecCCCCCCCCeeeeecCCCCC--cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCc
Q 005240 6 GIGIHRLLPDDSLGPEKEVHGYPDGA--KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (706)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~i~~~~~~~--~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~ 83 (706)
+|.+.++.. ++.+.+....... ......|||||++|+|..+..+..+ -.....+|++|+++++.++|+.....
T Consensus 38 ~i~~~~~~~----~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r-~s~~~~~~i~d~~~~~~~~l~~~~~~ 112 (465)
T d1xfda1 38 TVRLWNVET----NTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQ-HSYTGYYVLSKIPHGDPQSLDPPEVS 112 (465)
T ss_dssp CEEEBCGGG----CCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSS-SCCCSEEEEEESSSCCCEECCCTTCC
T ss_pred cEEEEECCC----CCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeE-eeccccEEEEEccCCceeeccCccCC
Confidence 578888876 7777765433322 4567789999999999875322111 13457899999999999999643321
Q ss_pred cccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEc
Q 005240 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (706)
Q Consensus 84 ~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~ 163 (706)
...+..+.|||||+.|||+.. .+||+++
T Consensus 113 --~~~l~~~~wSPDG~~iafv~~--------------------------------------------------~nl~~~~ 140 (465)
T d1xfda1 113 --NAKLQYAGWGPKGQQLIFIFE--------------------------------------------------NNIYYCA 140 (465)
T ss_dssp --SCCCSBCCBCSSTTCEEEEET--------------------------------------------------TEEEEES
T ss_pred --ccccceeeeccCCceEEEEec--------------------------------------------------ceEEEEe
Confidence 112456899999999999842 5788888
Q ss_pred cC-CCceecCCC---ce-----------------EeeeeeCCCCcEEEEEeeccCcc--cccc--------------c--
Q 005240 164 LD-GTAKDFGTP---AV-----------------YTAVEPSPDQKYVLITSMHRPYS--YKVP--------------C-- 204 (706)
Q Consensus 164 l~-g~~~~lt~~---~~-----------------~~~~~~SpDG~~i~~~~~~~~~~--~~~~--------------~-- 204 (706)
.. ++..+++.. +. ...+.|||||++|+|...+...- +..+ +
T Consensus 141 ~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~ 220 (465)
T d1xfda1 141 HVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPK 220 (465)
T ss_dssp SSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCB
T ss_pred cCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccc
Confidence 84 455555543 11 23567999999999987653210 0000 0
Q ss_pred cc---ccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeee
Q 005240 205 AR---FSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQ 281 (706)
Q Consensus 205 ~~---~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 281 (706)
.. -...+++++++++..+.+.......... ......+.|+||++. ++...+.. .+...++++
T Consensus 221 ~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~------~~y~~~~~W~~d~~~-~~~~~nR~--------q~~~~i~~~ 285 (465)
T d1xfda1 221 AGSENPSISLHVIGLNGPTHDLEMMPPDDPRMR------EYYITMVKWATSTKV-AVTWLNRA--------QNVSILTLC 285 (465)
T ss_dssp TTSCCCEEEEEEEESSSSCCCEECCCCCCGGGS------SEEEEEEEESSSSEE-EEEEEETT--------SCEEEEEEE
T ss_pred cCCCCCceeEEEEecCCCcEEEEEeccCcCccc------cceeeeeEEcCCCeE-EEEEEccc--------cccceEEEE
Confidence 00 0136888999866544332221110000 001225789999873 33332221 123358888
Q ss_pred cCCCCCCCCceEEeec--cc----ccccceecCCCceEEEEe-eccccceEEEEEcCCCC-----CCCceeeecCccccc
Q 005240 282 PAEPAEGEKPEILHKL--DL----RFRSVSWCDDSLALVNET-WYKTSQTRTWLVCPGSK-----DVAPRVLFDRVFENV 349 (706)
Q Consensus 282 d~~~~~~~~~~~l~~~--~~----~~~~~~wspDg~~l~~~~-~~~~~~~~l~~~d~~~~-----~~~~~~l~~~~~~~~ 349 (706)
|+ .+|+.+.+... .. ....+.|++||+.++|.. ...++..++|.+.+.+. +...++|+.+...-.
T Consensus 286 d~---~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~ 362 (465)
T d1xfda1 286 DA---TTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVT 362 (465)
T ss_dssp ET---TTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEE
T ss_pred cC---CCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCCceEE
Confidence 88 77887776532 21 235689999999887653 23446667777754321 123456654432210
Q ss_pred ccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeeecccchhhhhhhhhhccCC
Q 005240 350 YSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQ 429 (706)
Q Consensus 350 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~ 429 (706)
. .+.|+.+++.|+|.+.. .+ ....+||+++++++..+++...... -..+.
T Consensus 363 ~------i~~~d~~~~~vyF~a~~--------------~~--p~~~hly~v~l~g~~~~~~lt~~~~--------~~~~~ 412 (465)
T d1xfda1 363 K------ILAYDEKGNKIYFLSTE--------------DL--PRRRQLYSANTVGNFNRQCLSCDLV--------ENCTY 412 (465)
T ss_dssp E------EEEEETTTTEEEEEESS--------------SC--TTCCEEEEECSSTTCCCBCSSTTSS--------SSCCC
T ss_pred E------EEEEcCCCCEEEEEEeC--------------CC--CCceEEEEEECCCCCcceeeccccC--------CCCCE
Confidence 0 13567777777776532 11 3456899999987654443322210 01234
Q ss_pred CceecccCCCEEEEEEecCCCCcEEEEEECCCCceeEeecCCC
Q 005240 430 GEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPH 472 (706)
Q Consensus 430 ~~~~~s~Dg~~l~~~~~~~~~p~~v~~~~~~~~~~~~lt~~~~ 472 (706)
++++||||+++++.+++.+..|+ +.+++..+++....-..|.
T Consensus 413 ~~~~~S~~~~y~v~~~s~~~~P~-~~~~~~~~~~~~~~Le~N~ 454 (465)
T d1xfda1 413 FSASFSHSMDFFLLKCEGPGVPM-VTVHNTTDKKKMFDLETNE 454 (465)
T ss_dssp CEEEECTTSSEEEEECCSSSSCC-EEEEETTTCCEEEEEECCH
T ss_pred EEEEECCCCCEEEEEeecCCCCe-EEEEECCCCCEEEEEcCCH
Confidence 67899999999999999998776 6677767666554444443
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.88 E-value=8.1e-21 Score=204.74 Aligned_cols=364 Identities=10% Similarity=-0.045 Sum_probs=213.1
Q ss_pred cceeEeecCCCCCCCCeeeeecCCC----CCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccC
Q 005240 5 TGIGIHRLLPDDSLGPEKEVHGYPD----GAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFES 80 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~i~~~~~----~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~ 80 (706)
.+|++.++.. |+.+++..-.. ...+..+.|||||++|||.++..+ ........++|++|+++++.++++..
T Consensus 36 ~~~~~~~~~t----~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~-~~r~s~~~~~~l~d~~~~~~~~l~~~ 110 (470)
T d2bgra1 36 NNILVFNAEY----GNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVK-QWRHSYTASYDIYDLNKRQLITEERI 110 (470)
T ss_dssp SCEEEEETTT----CCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEE-CSSSCEEEEEEEEETTTTEECCSSCC
T ss_pred CcEEEEECCC----CCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcc-eeeeccCceEEEEECCCCcccccccC
Confidence 4688999977 88877643221 235788999999999999876321 11124457899999999999999876
Q ss_pred CCccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEE
Q 005240 81 PDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLV 160 (706)
Q Consensus 81 ~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~ 160 (706)
+.. +..+.|||||++|||... .+||
T Consensus 111 ~~~-----~~~~~~SPDG~~ia~~~~--------------------------------------------------~~l~ 135 (470)
T d2bgra1 111 PNN-----TQWVTWSPVGHKLAYVWN--------------------------------------------------NDIY 135 (470)
T ss_dssp CTT-----EEEEEECSSTTCEEEEET--------------------------------------------------TEEE
T ss_pred Ccc-----ccccccccCcceeeEeec--------------------------------------------------ccce
Confidence 654 678999999999999742 5788
Q ss_pred EEccC-CCceecCCC--------------------ceEeeeeeCCCCcEEEEEeeccCcc--cccc--------------
Q 005240 161 LGSLD-GTAKDFGTP--------------------AVYTAVEPSPDQKYVLITSMHRPYS--YKVP-------------- 203 (706)
Q Consensus 161 ~~~l~-g~~~~lt~~--------------------~~~~~~~~SpDG~~i~~~~~~~~~~--~~~~-------------- 203 (706)
++++. |+..+++.. +....+.|||||++|+|...+...- ...+
T Consensus 136 ~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~~~~~~~~~~~~~~~~ 215 (470)
T d2bgra1 136 VKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVR 215 (470)
T ss_dssp EESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEE
T ss_pred EEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceEEEEeeccCCCCCCeeee
Confidence 88884 455555432 1224577999999999987653210 0000
Q ss_pred --c-----ccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccc
Q 005240 204 --C-----ARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRD 276 (706)
Q Consensus 204 --~-----~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~ 276 (706)
+ ......++++++.++....+....... .+............+.|+++++. +++..+.. .+.. .-
T Consensus 216 ~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~w~~~~~~-~~~~~~r~-~~~~-----~~ 287 (470)
T d2bgra1 216 VPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQIT-APASMLIGDHYLCDVTWATQERI-SLQWLRRI-QNYS-----VM 287 (470)
T ss_dssp EECCBTTSCCCEEEEEEEEGGGCCSSSCCCEEEEC-CCHHHHTSCEEEEEEEEEETTEE-EEEEEESS-TTEE-----EE
T ss_pred eccccccccCCcceEEEEECCCcceeeeccccccC-CccccCCCCceEEEEEEcCCCce-eEEEeecc-CCce-----EE
Confidence 0 001135667777654332221110000 00000000001125689998864 33222221 1110 01
Q ss_pred eeeeecCCCCCCCCceEEee------c------ccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecC
Q 005240 277 IIYTQPAEPAEGEKPEILHK------L------DLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDR 344 (706)
Q Consensus 277 ~l~~~d~~~~~~~~~~~l~~------~------~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~ 344 (706)
.++.+|. .++....+.. . ......+.|++++...++.....++..+||+++.++ +.+++|+..
T Consensus 288 ~~~~~d~---~tg~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~dg~~~ly~~~~~g--~~~~~lt~g 362 (470)
T d2bgra1 288 DICDYDE---SSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDK--KDCTFITKG 362 (470)
T ss_dssp EEEEEET---TTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTC--SCCEESCCS
T ss_pred EEEEecC---CCCcEEEEEEEeeeeeeccceeecccCCCceeeecCCCcEEEEeccCcCceeEEEeccC--CceeeeccC
Confidence 3455555 4554443321 0 112345678887655443333556788999999988 457777654
Q ss_pred cccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCc-eeeeecccchhhhhhhh
Q 005240 345 VFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGS-KERIWESNREKYFETAV 423 (706)
Q Consensus 345 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~-~~~l~~~~~~~~~~~~~ 423 (706)
...-. -.++.|++.|+|.+.. .+.+ ...++||++++++++ .+.|+..-.
T Consensus 363 ~~~v~--------~~~~~d~~~iyf~a~~------------~~~~--p~~~~ly~v~~~g~~~~~~lt~~~~-------- 412 (470)
T d2bgra1 363 TWEVI--------GIEALTSDYLYYISNE------------YKGM--PGGRNLYKIQLSDYTKVTCLSCELN-------- 412 (470)
T ss_dssp SSCEE--------EEEEECSSEEEEEESC------------GGGC--TTCBEEEEEETTCTTCEEESSTTTS--------
T ss_pred CeeEE--------EEEEECCCEEEEEEec------------CCCC--cceEEEEEEECCCCCceeEeccccc--------
Confidence 43211 1245677777776532 1112 245689999998654 444432110
Q ss_pred hhccCCCceecccCCCEEEEEEecCCCCcEEEEEECCCCceeEeecCCC
Q 005240 424 ALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPH 472 (706)
Q Consensus 424 ~~~~~~~~~~~s~Dg~~l~~~~~~~~~p~~v~~~~~~~~~~~~lt~~~~ 472 (706)
....+.+.++|||||++++.+++.+..|+ +.+++..+++..++.+.|.
T Consensus 413 ~~~~~~~s~~fSpdgky~~~~~s~~~~P~-~~l~~~~~g~~v~~le~n~ 460 (470)
T d2bgra1 413 PERCQYYSVSFSKEAKYYQLRCSGPGLPL-YTLHSSVNDKGLRVLEDNS 460 (470)
T ss_dssp TTTBCBEEEEECTTSSEEEEEECSBSSCE-EEEEETTTTEEEEEEECCH
T ss_pred CCCCCEEEEEECCCCCEEEEEecCCCCCe-EEEEECCCCCEEEEEeccH
Confidence 11123457899999999999999999987 5677777776655544453
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.87 E-value=1.1e-20 Score=187.21 Aligned_cols=253 Identities=17% Similarity=0.163 Sum_probs=176.2
Q ss_pred CeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCC
Q 005240 43 KRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGP 122 (706)
Q Consensus 43 ~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~ 122 (706)
.+|||++..+ ...+..+||++|.+|+..++|+..... +.+++|||||++|||.....
T Consensus 4 ~~iay~~~~~----~~~~~~~l~i~d~dG~~~~~l~~~~~~-----~~sP~wSPDGk~IAf~~~~~-------------- 60 (269)
T d2hqsa1 4 TRIAYVVQTN----GGQFPYELRVSDYDGYNQFVVHRSPQP-----LMSPAWSPDGSKLAYVTFES-------------- 60 (269)
T ss_dssp CEEEEEEECS----SSSCCEEEEEEETTSCSCEEEEEESSC-----EEEEEECTTSSEEEEEECTT--------------
T ss_pred CeEEEEEEeC----CCCceEEEEEEcCCCCCcEEEecCCCc-----eeeeEECCCCCEEEEEEeec--------------
Confidence 7999998742 123345899999999999999876654 67899999999999986421
Q ss_pred ceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCC-CceecCCC-ceEeeeeeCCCCcEEEEEeeccCccc
Q 005240 123 KIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSY 200 (706)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g-~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~ 200 (706)
....+|.++..+ ..++++.. .....+.|||||++|++......
T Consensus 61 --------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i~~~~~~~~--- 105 (269)
T d2hqsa1 61 --------------------------------GRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTG--- 105 (269)
T ss_dssp --------------------------------SSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTS---
T ss_pred --------------------------------cCcceeeeecccCceeEEeeeecccccceecCCCCeeeEeeecCC---
Confidence 125788888855 66677666 66778899999999999886543
Q ss_pred ccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeee
Q 005240 201 KVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYT 280 (706)
Q Consensus 201 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~ 280 (706)
...+..+................ .....|++++.. +++.....+. ..|+.
T Consensus 106 -------~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~-~~~~~~~~g~---------~~i~~ 155 (269)
T d2hqsa1 106 -------SLNLYVMDLASGQIRQVTDGRSN-------------NTEPTWFPDSQN-LAFTSDQAGR---------PQVYK 155 (269)
T ss_dssp -------SCEEEEEETTTCCEEECCCCSSC-------------EEEEEECTTSSE-EEEEECTTSS---------CEEEE
T ss_pred -------ccceeecccccccceeeeecccc-------------cccccccccccc-ceecccccCC---------ceEee
Confidence 23444444444444444333221 113478888887 5555433221 14778
Q ss_pred ecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEe
Q 005240 281 QPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTR 360 (706)
Q Consensus 281 ~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 360 (706)
.+. +++...+++........+.|+|||+.+++.+.. .+...|++++..++ ..+.+.... ....++|
T Consensus 156 ~~~---~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~-~~~~~i~~~~~~~~--~~~~~~~~~--------~~~~p~~ 221 (269)
T d2hqsa1 156 VNI---NGGAPQRITWEGSQNQDADVSSDGKFMVMVSSN-GGQQHIAKQDLATG--GVQVLSSTF--------LDETPSL 221 (269)
T ss_dssp EET---TSSCCEECCCSSSEEEEEEECTTSSEEEEEEEC-SSCEEEEEEETTTC--CEEECCCSS--------SCEEEEE
T ss_pred eec---ccccceeeecccccccccccccccceeEEEeec-CCceeeeEeecccc--cceEeecCc--------cccceEE
Confidence 887 677777777777788889999999999988644 46778999998874 233332211 1234789
Q ss_pred ccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeeecccc
Q 005240 361 TSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNR 415 (706)
Q Consensus 361 s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~ 415 (706)
||||++|+|.... +....|++++++++..++|+..++
T Consensus 222 SPDG~~i~f~s~~------------------~~~~~l~~~~~dg~~~~~lt~~~g 258 (269)
T d2hqsa1 222 APNGTMVIYSSSQ------------------GMGSVLNLVSTDGRFKARLPATDG 258 (269)
T ss_dssp CTTSSEEEEEEEE------------------TTEEEEEEEETTSCCEEECCCSSS
T ss_pred CCCCCEEEEEEcC------------------CCCcEEEEEECCCCCEEEEeCCCC
Confidence 9999999998743 123358889998888888876653
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.86 E-value=5.3e-20 Score=182.31 Aligned_cols=248 Identities=14% Similarity=0.094 Sum_probs=175.3
Q ss_pred ccceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCc
Q 005240 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (706)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~ 83 (706)
..+|+|.|++. +..++|+..+. .+..|+|||||++|||++.. ....++|+++..++..++++.....
T Consensus 18 ~~~l~i~d~dG----~~~~~l~~~~~--~~~sP~wSPDGk~IAf~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (269)
T d2hqsa1 18 PYELRVSDYDG----YNQFVVHRSPQ--PLMSPAWSPDGSKLAYVTFE-------SGRSALVIQTLANGAVRQVASFPRH 84 (269)
T ss_dssp CEEEEEEETTS----CSCEEEEEESS--CEEEEEECTTSSEEEEEECT-------TSSCEEEEEETTTCCEEEEECCSSC
T ss_pred eEEEEEEcCCC----CCcEEEecCCC--ceeeeEECCCCCEEEEEEee-------ccCcceeeeecccCceeEEeeeecc
Confidence 34799999866 89999985443 37899999999999998753 5567899999999999999866553
Q ss_pred cccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEc
Q 005240 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (706)
Q Consensus 84 ~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~ 163 (706)
...+.|||||+.|++...... ...++...
T Consensus 85 -----~~~~~~spdg~~i~~~~~~~~----------------------------------------------~~~~~~~~ 113 (269)
T d2hqsa1 85 -----NGAPAFSPDGSKLAFALSKTG----------------------------------------------SLNLYVMD 113 (269)
T ss_dssp -----EEEEEECTTSSEEEEEECTTS----------------------------------------------SCEEEEEE
T ss_pred -----cccceecCCCCeeeEeeecCC----------------------------------------------ccceeecc
Confidence 567899999999998753211 12333333
Q ss_pred c-CCCceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccC
Q 005240 164 L-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVR 241 (706)
Q Consensus 164 l-~g~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~ 241 (706)
. .......... .....+.++++++.+++...... ..+|++.+++++...+++.....
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----------~~~i~~~~~~~~~~~~~~~~~~~----------- 172 (269)
T d2hqsa1 114 LASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAG----------RPQVYKVNINGGAPQRITWEGSQ----------- 172 (269)
T ss_dssp TTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTS----------SCEEEEEETTSSCCEECCCSSSE-----------
T ss_pred cccccceeeeeccccccccccccccccceecccccC----------CceEeeeecccccceeeeccccc-----------
Confidence 3 3344444444 45567889999999998887643 35899999998877777655322
Q ss_pred CCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccc
Q 005240 242 EGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKT 321 (706)
Q Consensus 242 ~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~ 321 (706)
.....|||||+. +++.....+. ..+++++. .++. .+++........|.|||||+.|+|.+...
T Consensus 173 --~~~~~~spdg~~-~~~~~~~~~~---------~~i~~~~~---~~~~-~~~~~~~~~~~~p~~SPDG~~i~f~s~~~- 235 (269)
T d2hqsa1 173 --NQDADVSSDGKF-MVMVSSNGGQ---------QHIAKQDL---ATGG-VQVLSSTFLDETPSLAPNGTMVIYSSSQG- 235 (269)
T ss_dssp --EEEEEECTTSSE-EEEEEECSSC---------EEEEEEET---TTCC-EEECCCSSSCEEEEECTTSSEEEEEEEET-
T ss_pred --ccccccccccce-eEEEeecCCc---------eeeeEeec---cccc-ceEeecCccccceEECCCCCEEEEEEcCC-
Confidence 225589999998 7766543321 14777777 4444 45555566677899999999999987543
Q ss_pred cceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEecc
Q 005240 322 SQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTS 362 (706)
Q Consensus 322 ~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~ 362 (706)
+...||+++++++ ..+.|+..... ...++|||
T Consensus 236 ~~~~l~~~~~dg~--~~~~lt~~~g~-------~~~p~WSP 267 (269)
T d2hqsa1 236 MGSVLNLVSTDGR--FKARLPATDGQ-------VKFPAWSP 267 (269)
T ss_dssp TEEEEEEEETTSC--CEEECCCSSSE-------EEEEEECC
T ss_pred CCcEEEEEECCCC--CEEEEeCCCCc-------EEeEEeCC
Confidence 5678999999984 45666543211 12367887
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.85 E-value=5.8e-20 Score=189.57 Aligned_cols=190 Identities=13% Similarity=0.069 Sum_probs=142.5
Q ss_pred cceeeCC-CCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCC
Q 005240 34 NFVSWSP-DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDP 112 (706)
Q Consensus 34 ~~~~~SP-DG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~ 112 (706)
....||| ||++|||.+. .+||++|+++++.+++++.. .+..+.|||||++|++.+..
T Consensus 6 ~~~~fSP~dG~~~a~~~~-----------g~v~v~d~~~~~~~~~~~~~------~v~~~~~spDg~~l~~~~~~----- 63 (360)
T d1k32a3 6 FAEDFSPLDGDLIAFVSR-----------GQAFIQDVSGTYVLKVPEPL------RIRYVRRGGDTKVAFIHGTR----- 63 (360)
T ss_dssp GEEEEEECGGGCEEEEET-----------TEEEEECTTSSBEEECSCCS------CEEEEEECSSSEEEEEEEET-----
T ss_pred hcccccCCCCCEEEEEEC-----------CeEEEEECCCCcEEEccCCC------CEEEEEECCCCCEEEEEEcC-----
Confidence 3467999 9999999752 58999999999999986432 27889999999999987532
Q ss_pred CCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccC-CCceecCCC-ceEeeeeeCCCCcEEE
Q 005240 113 PKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD-GTAKDFGTP-AVYTAVEPSPDQKYVL 190 (706)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~-g~~~~lt~~-~~~~~~~~SpDG~~i~ 190 (706)
....|+++++. |+.+++... ..+..++|||||++|+
T Consensus 64 ------------------------------------------~g~~v~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~ 101 (360)
T d1k32a3 64 ------------------------------------------EGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAV 101 (360)
T ss_dssp ------------------------------------------TEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEE
T ss_pred ------------------------------------------CCCEEEEEECCCCcEEEeeCCCceEEeeeecccccccc
Confidence 11468899994 588888777 7788999999999999
Q ss_pred EEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCcc
Q 005240 191 ITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANV 270 (706)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~ 270 (706)
+.... ..+++|++++++...+..... .....++|||||+. |++.........
T Consensus 102 ~~~~~-------------~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~spdg~~-la~~~~~~~~~~-- 153 (360)
T d1k32a3 102 VANDR-------------FEIMTVDLETGKPTVIERSRE------------AMITDFTISDNSRF-IAYGFPLKHGET-- 153 (360)
T ss_dssp EEETT-------------SEEEEEETTTCCEEEEEECSS------------SCCCCEEECTTSCE-EEEEEEECSSTT--
T ss_pred eeccc-------------cccccccccccceeeeeeccc------------ccccchhhccceee-eeeeccccccce--
Confidence 87654 379999999777666544321 12347899999998 777654443222
Q ss_pred ccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEee
Q 005240 271 EVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETW 318 (706)
Q Consensus 271 ~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~ 318 (706)
.......++++++ .+++...++........+.|+|||+.|++.+.
T Consensus 154 ~~~~~~~~~v~d~---~~~~~~~~~~~~~~~~~~~~spdg~~l~~~s~ 198 (360)
T d1k32a3 154 DGYVMQAIHVYDM---EGRKIFAATTENSHDYAPAFDADSKNLYYLSY 198 (360)
T ss_dssp CSCCEEEEEEEET---TTTEEEECSCSSSBEEEEEECTTSCEEEEEES
T ss_pred eeccccceeeecc---ccCceeeecccccccccccccCCCCEEEEEeC
Confidence 1123345788888 67777777777777788999999999998763
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.84 E-value=6.2e-20 Score=182.79 Aligned_cols=256 Identities=13% Similarity=0.060 Sum_probs=166.6
Q ss_pred eeeCCC--CCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCCC
Q 005240 36 VSWSPD--GKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPP 113 (706)
Q Consensus 36 ~~~SPD--G~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~ 113 (706)
..+||| |++|||++. .+||++|+++|+.++||..++. ...+.|||||++|||........
T Consensus 4 ~~~sPdi~G~~v~f~~~-----------~dl~~~d~~~g~~~~Lt~~~~~-----~~~p~~SPDG~~iaf~~~~~~~~-- 65 (281)
T d1k32a2 4 LLLNPDIHGDRIIFVCC-----------DDLWEHDLKSGSTRKIVSNLGV-----INNARFFPDGRKIAIRVMRGSSL-- 65 (281)
T ss_dssp CCEEEEEETTEEEEEET-----------TEEEEEETTTCCEEEEECSSSE-----EEEEEECTTSSEEEEEEEESTTC--
T ss_pred cccCCCCCCCEEEEEeC-----------CcEEEEECCCCCEEEEecCCCc-----ccCEEECCCCCEEEEEEeeCCCC--
Confidence 467999 999999863 4799999999999999977654 67899999999999986432211
Q ss_pred CCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccC-CCceecCCC-c-------eEeeeeeCC
Q 005240 114 KKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD-GTAKDFGTP-A-------VYTAVEPSP 184 (706)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~-g~~~~lt~~-~-------~~~~~~~Sp 184 (706)
...+||+++++ |+.++|+.. . ....+.|||
T Consensus 66 -----------------------------------------~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~sp 104 (281)
T d1k32a2 66 -----------------------------------------NTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDP 104 (281)
T ss_dssp -----------------------------------------CEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECT
T ss_pred -----------------------------------------CceEEEEEEecCCceEEeeecCCCccCccccccccccCC
Confidence 22689999995 488888765 1 235678999
Q ss_pred CCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEecc
Q 005240 185 DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQD 264 (706)
Q Consensus 185 DG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~ 264 (706)
||+.|+|+....+... ...+++.+.+++..+...... ....|.+++.. +++.....
T Consensus 105 dg~~l~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~-~~~~~~~~ 160 (281)
T d1k32a2 105 DGNLIISTDAMQPFSS-------MTCLYRVENDGINFVPLNLGP----------------ATHILFADGRR-VIGRNTFE 160 (281)
T ss_dssp TCCEEEEECTTSSSTT-------CCEEEEEEGGGTEEEECCSCS----------------CSEEEEETTEE-EEEESCSC
T ss_pred CCCEEEEEEccCCCcc-------ceeeeeecCCCceeEEecCCc----------------cceeeecCCCe-EEEeeccc
Confidence 9999999876643211 245677788877766654332 13467888876 44332222
Q ss_pred CCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecC
Q 005240 265 RGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDR 344 (706)
Q Consensus 265 ~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~ 344 (706)
................... ..+....++........+.|+++. +++.. ...+..+||++|++++ +.++|+..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~l~~~d~~g~--~~~~lt~~ 232 (281)
T d1k32a2 161 LPHWKGYRGGTRGKIWIEV---NSGAFKKIVDMSTHVSSPVIVGHR--IYFIT-DIDGFGQIYSTDLDGK--DLRKHTSF 232 (281)
T ss_dssp CTTSTTCCSTTCCEEEEEE---ETTEEEEEECCSSCCEEEEEETTE--EEEEE-CTTSSCEEEEEETTSC--SCEECCCC
T ss_pred cceeeeeccCCcceeeeec---cccceeeccCCccccceeeeeccc--cceec-ccccccceEEEeCCCC--ceEEeecC
Confidence 1111110001111111111 223344445555666777888774 44443 3346678999999994 56777543
Q ss_pred cccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeeec
Q 005240 345 VFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWE 412 (706)
Q Consensus 345 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~ 412 (706)
.- .....|||||+.|+|.... .||++|+++|+.++|.-
T Consensus 233 ~~--------~~~~~~SpDG~~I~f~~~~----------------------~l~~~d~~~g~~~~i~~ 270 (281)
T d1k32a2 233 TD--------YYPRHLNTDGRRILFSKGG----------------------SIYIFNPDTEKIEKIEI 270 (281)
T ss_dssp CS--------SCEEEEEESSSCEEEEETT----------------------EEEEECTTTCCEEECCC
T ss_pred CC--------cccccCcCCCCEEEEEeCC----------------------EEEEEECCCCCEEEecc
Confidence 21 1124689999999997511 38899999999888853
|
| >d1qfma2 c.69.1.4 (A:431-710) Prolyl oligopeptidase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Prolyl oligopeptidase, C-terminal domain domain: Prolyl oligopeptidase, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.83 E-value=1.2e-19 Score=180.93 Aligned_cols=205 Identities=15% Similarity=0.165 Sum_probs=151.6
Q ss_pred ceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEE
Q 005240 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 560 (706)
Q Consensus 481 ~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~ 560 (706)
++|.|+|++.||.+|+++|++|+++++++ |+|+||++||||.... . ..........++..|++++.
T Consensus 6 ~~e~v~~~s~DG~~i~~~l~~P~~~~~~~--~~P~iv~~HGG~~~~~--------~----~~~~~~~~~~~~~~~~~~~~ 71 (280)
T d1qfma2 6 QTVQIFYPSKDGTKIPMFIVHKKGIKLDG--SHPAFLYGYGGFNISI--------T----PNYSVSRLIFVRHMGGVLAV 71 (280)
T ss_dssp EEEEEEEECTTSCEEEEEEEEETTCCCSS--CSCEEEECCCCTTCCC--------C----CCCCHHHHHHHHHHCCEEEE
T ss_pred EEEEEEEECCCCCEEEEEEEEcCCCCCCC--CeEEEEEECCCCcccC--------C----CCcchhhhhhhcccceeeec
Confidence 57889999999999999999999987655 6999999999975420 1 11122334555667888877
Q ss_pred cCCCCcCCCCCCCC---chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCC
Q 005240 561 GPSIPIIGEGDKLP---NDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSY 637 (706)
Q Consensus 561 ~~~~~~~g~g~~~~---~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~ 637 (706)
..+++...++.... ..........+...++.+...+..++..+++++|+|.||+++..++...++.++|+++..+..
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~gg~~~~~~~~~~~~~~~~~~~~~~~~ 151 (280)
T d1qfma2 72 ANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVM 151 (280)
T ss_dssp ECCTTSSTTHHHHHHTTSGGGTHHHHHHHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCC
T ss_pred cccccccccchhhhhcccccccccccchhhhhhhhhhhhcccccccccccccccccchhhhhhhcccchhhheeeecccc
Confidence 66654443322111 122334556677777777888888888999999999999999999999999999999999987
Q ss_pred CCCCC---------------------------------------------Ccc------------chHHHHHHHHHh---
Q 005240 638 NKTLT---------------------------------------------PFG------------FQAERFFDALKG--- 657 (706)
Q Consensus 638 d~~~~---------------------------------------------~~~------------~~~~~~~~~l~~--- 657 (706)
++... |.. .++.+|+++|++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~pP~LiihG~~D~~Vp~~~s~~l~~aL~~~g~ 231 (280)
T d1qfma2 152 DMLKFHKYTIGHAWTTDYGCSDSKQHFEWLIKYSPLHNVKLPEADDIQYPSMLLLTADHDDRVVPLHSLKFIATLQYIVG 231 (280)
T ss_dssp CTTTGGGSTTGGGGHHHHCCTTSHHHHHHHHHHCGGGCCCCCSSTTCCCCEEEEEEETTCCSSCTHHHHHHHHHHHHHTT
T ss_pred chhhhccccccccceecccCCCcccccccccccccccccchhhhcccCCCceEEeecccCCCCCHHHHHHHHHHHHHhhh
Confidence 64321 000 134499999964
Q ss_pred ----CCCcEEEEEeCCCCccCCCccc-HHHHHHHHHHHHHHHhccCC
Q 005240 658 ----HGALSRLVLLPFEHHVYAAREN-VMHVIWETDRWLQKYCLSNT 699 (706)
Q Consensus 658 ----~~~~~~~~~~~~~~H~~~~~~~-~~~~~~~~~~f~~~~l~~~~ 699 (706)
.++++++++||+++|+|..+.. ..+.+.++++||+|||+.+.
T Consensus 232 ~~~~~~~~~~l~~~~~~gHgf~~~~~~~~~~~~~~~~fl~k~L~~~~ 278 (280)
T d1qfma2 232 RSRKQNNPLLIHVDTKAGHGAGKPTAKVIEEVSDMFAFIARCLNIDW 278 (280)
T ss_dssp TSTTCCSCEEEEEESSCCSSTTCCHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred hhhcCCCcEEEEEeCcCCCCCCCcHHHHHHHHHHHHHHHHHhcCCCC
Confidence 4789999999999999975533 45677789999999998643
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=6.6e-18 Score=180.04 Aligned_cols=331 Identities=11% Similarity=0.106 Sum_probs=198.7
Q ss_pred ccceeEeecCCCCCCCCeeeeecCCCCC-cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCC
Q 005240 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGA-KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD 82 (706)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~i~~~~~~~-~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~ 82 (706)
.-.++|+|+.. +..++|+...... ....|+|||||++|||+++ .+||+++..+++..++|....
T Consensus 90 ~~~~~i~d~~~----~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~~-----------~nl~~~~~~~~~~~~lt~~g~ 154 (465)
T d1xfda1 90 TGYYVLSKIPH----GDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-----------NNIYYCAHVGKQAIRVVSTGK 154 (465)
T ss_dssp CSEEEEEESSS----CCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-----------TEEEEESSSSSCCEEEECCCB
T ss_pred cccEEEEEccC----CceeeccCccCCccccceeeeccCCceEEEEec-----------ceEEEEecCCCceEEEecccC
Confidence 34678899988 9999987443332 5678999999999999863 589999999999999986543
Q ss_pred cc-c-cc------------cccceEEecCCcEEEEEecCCCCCC-CCCC--CCCCCCceeecCCCcccccccchhccCCc
Q 005240 83 IC-L-NA------------VFGSFVWVNNSTLLIFTIPSSRRDP-PKKT--MVPLGPKIQSNEQKNIIISRMTDNLLKDE 145 (706)
Q Consensus 83 ~~-~-~~------------~~~~~~wSpDg~~l~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (706)
.. + ++ .-..+-|||||++|||......... ...+ .....+.. . .+.|+
T Consensus 155 ~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~---------~------~~~Yp 219 (465)
T d1xfda1 155 EGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTV---------K------PYHYP 219 (465)
T ss_dssp TTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCC---------E------EEECC
T ss_pred cceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeeccccccccccee---------e------eeecc
Confidence 21 1 10 0124569999999999854322211 0000 00000000 0 01111
Q ss_pred hhhhhhhhcccceEEEEccCC-CceecC--CC------ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEec
Q 005240 146 YDESLFDYYTTAQLVLGSLDG-TAKDFG--TP------AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTT 216 (706)
Q Consensus 146 ~d~~~~~~~~~~~l~~~~l~g-~~~~lt--~~------~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~ 216 (706)
..+. .....+|+++++++ ..+... .. ..+..+.|+||++.+++..++... ...+.++|+
T Consensus 220 ~~G~---~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~---------~~~i~~~d~ 287 (465)
T d1xfda1 220 KAGS---ENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQN---------VSILTLCDA 287 (465)
T ss_dssp BTTS---CCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSC---------EEEEEEEET
T ss_pred ccCC---CCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccc---------cceEEEEcC
Confidence 1110 01235799999955 332221 11 246788999999866665554422 357889999
Q ss_pred CCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCC----CCCCCCce
Q 005240 217 DGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAE----PAEGEKPE 292 (706)
Q Consensus 217 ~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~----~~~~~~~~ 292 (706)
.+++.+.+..... ..|+. .....+.|+|||+. ++|+...... .++.++.+.+. ...++..+
T Consensus 288 ~tg~~~~~~~e~~----~~wv~---~~~~~p~~~~dg~~-~~fi~~se~~-------g~~~ly~~~~~~~~~~~~~~~~~ 352 (465)
T d1xfda1 288 TTGVCTKKHEDES----EAWLH---RQNEEPVFSKDGRK-FFFIRAIPQG-------GRGKFYHITVSSSQPNSSNDNIQ 352 (465)
T ss_dssp TTCCEEEEEEEEC----SSCCC---CCCCCCEECTTSCS-EEEEEEECCS-------SSSCEEEEEEECSSCCSSSCCCC
T ss_pred CCCcEEEEEEEcC----CceEe---ccCCceeEccCCCe-eEEEEeeeec-------ccCceEEEEeccccccCCCceeE
Confidence 9887777654321 11111 01124589999998 7666432211 12235544321 11455667
Q ss_pred EEeecccccccc-eecCCCceEEEEeeccc-cceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEe
Q 005240 293 ILHKLDLRFRSV-SWCDDSLALVNETWYKT-SQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAK 370 (706)
Q Consensus 293 ~l~~~~~~~~~~-~wspDg~~l~~~~~~~~-~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 370 (706)
+||.....+..+ .|.++++.|+|.+...+ ...+||+++++++. ...+|+..... ..+...+.+||||++++..
T Consensus 353 ~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~-~~~~lt~~~~~----~~~~~~~~~S~~~~y~v~~ 427 (465)
T d1xfda1 353 SITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNF-NRQCLSCDLVE----NCTYFSASFSHSMDFFLLK 427 (465)
T ss_dssp BSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTC-CCBCSSTTSSS----SCCCCEEEECTTSSEEEEE
T ss_pred EeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCC-cceeeccccCC----CCCEEEEEECCCCCEEEEE
Confidence 888877776665 69999999999876543 56789999999853 33444321111 2244568899999998765
Q ss_pred eeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeeeccc
Q 005240 371 IKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESN 414 (706)
Q Consensus 371 ~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~ 414 (706)
.. | .+.|...+++..+|+..+.+..+
T Consensus 428 ~s--------------~----~~~P~~~~~~~~~~~~~~~Le~N 453 (465)
T d1xfda1 428 CE--------------G----PGVPMVTVHNTTDKKKMFDLETN 453 (465)
T ss_dssp CC--------------S----SSSCCEEEEETTTCCEEEEEECC
T ss_pred ee--------------c----CCCCeEEEEECCCCCEEEEEcCC
Confidence 42 2 23556777777778766665544
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.78 E-value=1.7e-17 Score=170.68 Aligned_cols=171 Identities=15% Similarity=0.095 Sum_probs=126.8
Q ss_pred cceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCcc
Q 005240 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~ 84 (706)
-.|+++++.. |+.+++. ....+..++|||||++|+++.. +....|+++|+++++.++++.+...
T Consensus 24 g~v~v~d~~~----~~~~~~~---~~~~v~~~~~spDg~~l~~~~~--------~~g~~v~v~d~~~~~~~~~~~~~~~- 87 (360)
T d1k32a3 24 GQAFIQDVSG----TYVLKVP---EPLRIRYVRRGGDTKVAFIHGT--------REGDFLGIYDYRTGKAEKFEENLGN- 87 (360)
T ss_dssp TEEEEECTTS----SBEEECS---CCSCEEEEEECSSSEEEEEEEE--------TTEEEEEEEETTTCCEEECCCCCCS-
T ss_pred CeEEEEECCC----CcEEEcc---CCCCEEEEEECCCCCEEEEEEc--------CCCCEEEEEECCCCcEEEeeCCCce-
Confidence 3688998866 8888874 4456899999999999999875 3345799999999999998766553
Q ss_pred ccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc
Q 005240 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (706)
Q Consensus 85 ~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l 164 (706)
+..+.|||||++|++... ...++.+++
T Consensus 88 ----v~~~~~spdg~~l~~~~~-------------------------------------------------~~~~~~~~~ 114 (360)
T d1k32a3 88 ----VFAMGVDRNGKFAVVAND-------------------------------------------------RFEIMTVDL 114 (360)
T ss_dssp ----EEEEEECTTSSEEEEEET-------------------------------------------------TSEEEEEET
T ss_pred ----EEeeeecccccccceecc-------------------------------------------------ccccccccc
Confidence 778999999999998742 157888888
Q ss_pred C-CCceecCCC--ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccC
Q 005240 165 D-GTAKDFGTP--AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVR 241 (706)
Q Consensus 165 ~-g~~~~lt~~--~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~ 241 (706)
+ ++...+... .....++|||||++|++......... .......+++|++.+++...++.....
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~---~~~~~~~~~v~d~~~~~~~~~~~~~~~----------- 180 (360)
T d1k32a3 115 ETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGET---DGYVMQAIHVYDMEGRKIFAATTENSH----------- 180 (360)
T ss_dssp TTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTT---CSCCEEEEEEEETTTTEEEECSCSSSB-----------
T ss_pred cccceeeeeecccccccchhhccceeeeeeeccccccce---eeccccceeeeccccCceeeecccccc-----------
Confidence 4 455444333 56678999999999999876543211 111235789999998888777665432
Q ss_pred CCCcceeeecCCCceEEEEE
Q 005240 242 EGMRSISWRADKPSTLYWVE 261 (706)
Q Consensus 242 ~g~~~~~~spdg~~~l~~~~ 261 (706)
...+.|||||+. |++..
T Consensus 181 --~~~~~~spdg~~-l~~~s 197 (360)
T d1k32a3 181 --DYAPAFDADSKN-LYYLS 197 (360)
T ss_dssp --EEEEEECTTSCE-EEEEE
T ss_pred --cccccccCCCCE-EEEEe
Confidence 235689999998 77764
|
| >d1vlqa_ c.69.1.25 (A:) Acetyl xylan esterase TM0077 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetyl xylan esterase-like domain: Acetyl xylan esterase TM0077 species: Thermotoga maritima [TaxId: 2336]
Probab=99.76 E-value=2.1e-17 Score=168.08 Aligned_cols=195 Identities=15% Similarity=0.128 Sum_probs=141.5
Q ss_pred CCCCceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCe
Q 005240 477 LASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRF 556 (706)
Q Consensus 477 ~~~~~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~ 556 (706)
...++.+.|+|++.||..|++++++|++. .+|+|+||++||++... ........|+++||
T Consensus 50 ~~~~~~~~v~~~s~dG~~l~~~l~~P~~~----~~~~P~Vv~~hG~~~~~----------------~~~~~~~~~a~~G~ 109 (322)
T d1vlqa_ 50 LKTVEAYDVTFSGYRGQRIKGWLLVPKLE----EEKLPCVVQYIGYNGGR----------------GFPHDWLFWPSMGY 109 (322)
T ss_dssp CSSEEEEEEEEECGGGCEEEEEEEEECCS----CSSEEEEEECCCTTCCC----------------CCGGGGCHHHHTTC
T ss_pred CCCeEEEEEEEECCCCcEEEEEEEeccCC----CCCccEEEEecCCCCCc----------------CcHHHHHHHHhCCC
Confidence 44567889999999999999999999863 23589999999975311 01223457899999
Q ss_pred EEEEcCCCCcCCCCCCC------------------------CchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechH
Q 005240 557 AVLAGPSIPIIGEGDKL------------------------PNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYG 612 (706)
Q Consensus 557 ~v~~~~~~~~~g~g~~~------------------------~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~G 612 (706)
+|+..+.+|....+... ....+....+.|..++++++..+..+|++||+++|+|+|
T Consensus 110 ~v~~~D~rG~G~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~a~~~~~~~~~~d~~ri~~~G~S~G 189 (322)
T d1vlqa_ 110 ICFVMDTRGQGSGWLKGDTPDYPEGPVDPQYPGFMTRGILDPRTYYYRRVFTDAVRAVEAAASFPQVDQERIVIAGGSQG 189 (322)
T ss_dssp EEEEECCTTCCCSSSCCCCCBCCSSSBCCCCSSSTTTTTTCTTTCHHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHH
T ss_pred EEEEeeccccCCCCCCccccccccccccccccchhhhchhhhhhhhhHHHHHHHHHHHHHHHhcCCcCchhccccccccc
Confidence 99997776543211110 011234456789999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCceeEEEeccCCCCCCC--------C-------------------------------------Ccc--
Q 005240 613 AFMTAHLLAHAPHLFCCGIARSGSYNKTL--------T-------------------------------------PFG-- 645 (706)
Q Consensus 613 G~~a~~~~~~~p~~~~a~v~~~~~~d~~~--------~-------------------------------------~~~-- 645 (706)
|++++.++... .+|+++++.++...... . |..
T Consensus 190 G~~a~~~~~~~-~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~~i~~P~Lv~ 268 (322)
T d1vlqa_ 190 GGIALAVSALS-KKAKALLCDVPFLCHFRRAVQLVDTHPYAEITNFLKTHRDKEEIVFRTLSYFDGVNFAARAKIPALFS 268 (322)
T ss_dssp HHHHHHHHHHC-SSCCEEEEESCCSCCHHHHHHHCCCTTHHHHHHHHHHCTTCHHHHHHHHHTTCHHHHHTTCCSCEEEE
T ss_pred hHHHHHHHhcC-CCccEEEEeCCccccHHHHHhhccccchhhHHhhhhcCcchhhhHHHHhhhhhHHHHHhcCCCCEEEE
Confidence 99999999998 57888888877643210 0 000
Q ss_pred -------chHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHhc
Q 005240 646 -------FQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCL 696 (706)
Q Consensus 646 -------~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~~~~l~ 696 (706)
...+..++.+++.+.++++++||+++|.... ....+..++||+++|+
T Consensus 269 ~G~~D~~vp~~~~~~~~~~~~~~~~l~~~p~~~H~~~~----~~~~~~~~~~l~~~l~ 322 (322)
T d1vlqa_ 269 VGLMDNICPPSTVFAAYNYYAGPKEIRIYPYNNHEGGG----SFQAVEQVKFLKKLFE 322 (322)
T ss_dssp EETTCSSSCHHHHHHHHHHCCSSEEEEEETTCCTTTTH----HHHHHHHHHHHHHHHC
T ss_pred EeCCCCCcCHHHHHHHHHHCCCCeEEEEECCCCCCCcc----ccCHHHHHHHHHHHhC
Confidence 0112666777777889999999999997642 2334567899999874
|
| >d1jkma_ c.69.1.2 (A:) Carboxylesterase {Bacillus subtilis, brefeldin A esterase [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Bacillus subtilis, brefeldin A esterase [TaxId: 1423]
Probab=99.74 E-value=2.1e-17 Score=170.11 Aligned_cols=200 Identities=15% Similarity=0.036 Sum_probs=142.9
Q ss_pred CCCceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeE
Q 005240 478 ASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFA 557 (706)
Q Consensus 478 ~~~~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~ 557 (706)
..+..+..++++.||.+|+..+|+|++. .+++|+|||+|||++..++. ... .....++.++++||+
T Consensus 75 ~~v~~~~~~i~~~dg~~i~~~iy~P~~~----~~~~Pviv~~HGGG~~~gs~--------~~~--~~~~~~~~la~~g~~ 140 (358)
T d1jkma_ 75 DDVETSTETILGVDGNEITLHVFRPAGV----EGVLPGLVYTHGGGMTILTT--------DNR--VHRRWCTDLAAAGSV 140 (358)
T ss_dssp CCEEEEEEEEECTTSCEEEEEEEEETTC----CSCEEEEEEECCSTTTSSCS--------SSH--HHHHHHHHHHHTTCE
T ss_pred CCccEEEEEEeCCCCCEEEEEEEecCCC----CCCCCeEEEecCCeeeeccc--------ccc--ccchHHHHHHhhhhe
Confidence 4468888999999999999999999862 23689999999997643111 000 012356778899999
Q ss_pred EEEcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHc-CCCCCCcEEEEEechHHHHHHHHHHhC-----CCceeEEE
Q 005240 558 VLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRR-GVADPSRIAVGGHSYGAFMTAHLLAHA-----PHLFCCGI 631 (706)
Q Consensus 558 v~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~-~~id~~~i~i~G~S~GG~~a~~~~~~~-----p~~~~a~v 631 (706)
|+.++||...+...+.. ....++|+.++++|+.++ ..+|++||+|+|.|.||+|++.++.+. ...+.+.+
T Consensus 141 VvsvdYRla~~~~pe~~----~p~~l~D~~~a~~wl~~~~~~~~~~ri~i~G~SAGG~La~~~a~~~~~~~~~~~~~~~~ 216 (358)
T d1jkma_ 141 VVMVDFRNAWTAEGHHP----FPSGVEDCLAAVLWVDEHRESLGLSGVVVQGESGGGNLAIATTLLAKRRGRLDAIDGVY 216 (358)
T ss_dssp EEEEECCCSEETTEECC----TTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEETHHHHHHHHHHHHHHHTTCGGGCSEEE
T ss_pred eeeeeecccccccccCC----CchhhHHHHHHHHHHHHhccccCCccceeecccCchHHHHHHHHHHhhcCCCccccccc
Confidence 99989886533211111 234689999999999875 236889999999999999998877541 24577888
Q ss_pred eccCCCCCCCC------------------------------------------Ccc------------------------
Q 005240 632 ARSGSYNKTLT------------------------------------------PFG------------------------ 645 (706)
Q Consensus 632 ~~~~~~d~~~~------------------------------------------~~~------------------------ 645 (706)
...|..+.... |..
T Consensus 217 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~a~~~~~~~lPp~li~~g~~D 296 (358)
T d1jkma_ 217 ASIPYISGGYAWDHERRLTELPSLVENDGYFIENGGMALLVRAYDPTGEHAEDPIAWPYFASEDELRGLPPFVVAVNELD 296 (358)
T ss_dssp EESCCCCCCTTSCHHHHHHHCTHHHHTTTSSSCHHHHHHHHHHHSSSSTTTTCTTTCGGGCCHHHHTTCCCEEEEEETTC
T ss_pred cccceeccccCccchhhcccccchhcccccccchhhhhhHHhhcCCccCCccCccccccccchhhccCCCCEEEEECCCC
Confidence 88876543210 000
Q ss_pred ---chHHHHHHHHHhCCCcEEEEEeCCCCccCC---C---cccHHHHHHHHHHHHHHHh
Q 005240 646 ---FQAERFFDALKGHGALSRLVLLPFEHHVYA---A---RENVMHVIWETDRWLQKYC 695 (706)
Q Consensus 646 ---~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~---~---~~~~~~~~~~~~~f~~~~l 695 (706)
-+.++|+++|++.|+++++++|||+.|.|. . +....+..+.|..|+.++.
T Consensus 297 ~l~~e~~~~~~~L~~aGv~v~~~~~~g~~Hgf~~~~~~~~~~~~~~~~~~i~~Fl~~~~ 355 (358)
T d1jkma_ 297 PLRDEGIAFARRLARAGVDVAARVNIGLVHGADVIFRHWLPAALESTVRDVAGFAADRA 355 (358)
T ss_dssp TTHHHHHHHHHHHHHTTCCEEEEEETTCCTTHHHHSGGGCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCcEEEEEECCCccchhhhccccCCHHHHHHHHHHHHHHHHHH
Confidence 022389999999999999999999999862 1 1234566778888887754
|
| >d1lzla_ c.69.1.2 (A:) Heroin esterase {Rhodococcus sp. [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Heroin esterase species: Rhodococcus sp. [TaxId: 1831]
Probab=99.74 E-value=1.2e-17 Score=169.36 Aligned_cols=195 Identities=19% Similarity=0.123 Sum_probs=134.5
Q ss_pred CCCceEEEEEEccCCe-EEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHH-CC
Q 005240 478 ASLQKEMIKYQRKDGV-PLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA-RR 555 (706)
Q Consensus 478 ~~~~~~~~~~~~~dg~-~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~G 555 (706)
..++.+.+++.+.||. +|+.++|+|++- .+|+|+|||+|||++..++. .. .......+++ .|
T Consensus 46 ~~v~~~~~~~~~~~g~~~i~~~~~~P~~~----~~~~Pvvv~iHGGG~~~g~~--------~~----~~~~~~~la~~~G 109 (317)
T d1lzla_ 46 DGVSLRELSAPGLDGDPEVKIRFVTPDNT----AGPVPVLLWIHGGGFAIGTA--------ES----SDPFCVEVARELG 109 (317)
T ss_dssp TTEEEEEEEECCSTTCCCEEEEEEEESSC----CSCEEEEEEECCSTTTSCCG--------GG----GHHHHHHHHHHHC
T ss_pred CCceEEEEEEecCCCCceEEEEEECCCCC----CCCCcEEEEecCcccccccc--------cc----cchHHHhHHhhcC
Confidence 4567789999998885 699999999862 24699999999997643221 11 1234455654 69
Q ss_pred eEEEEcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEEechHHHHHHHHHHhCCC----cee
Q 005240 556 FAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRR---GVADPSRIAVGGHSYGAFMTAHLLAHAPH----LFC 628 (706)
Q Consensus 556 ~~v~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~---~~id~~~i~i~G~S~GG~~a~~~~~~~p~----~~~ 628 (706)
|+|+.++|+..... .....+.|+.++++|+.+. .-+|++||+|+|+|+||++++.++.+.++ ...
T Consensus 110 ~~V~~vdYrl~pe~--------~~~~~~~d~~~~~~~~~~~~~~~g~D~~rI~l~G~SaGg~la~~~~~~~~~~~~~~~~ 181 (317)
T d1lzla_ 110 FAVANVEYRLAPET--------TFPGPVNDCYAALLYIHAHAEELGIDPSRIAVGGQSAGGGLAAGTVLKARDEGVVPVA 181 (317)
T ss_dssp CEEEEECCCCTTTS--------CTTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHHCSSCCC
T ss_pred Cccccccccccccc--------cccccccccccchhHHHHHHHHhCCCHHHEEEEEeccccHHHHHHHhhhhhccccccc
Confidence 99999888743221 1234577888888888764 23899999999999999999998866321 122
Q ss_pred EEEeccCCCCCCC------------------------------------------------------CCcc---------
Q 005240 629 CGIARSGSYNKTL------------------------------------------------------TPFG--------- 645 (706)
Q Consensus 629 a~v~~~~~~d~~~------------------------------------------------------~~~~--------- 645 (706)
+.+...+..+... .|..
T Consensus 182 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pp~li~~g~~D~l 261 (317)
T d1lzla_ 182 FQFLEIPELDDRLETVSMTNFVDTPLWHRPNAILSWKYYLGESYSGPEDPDVSIYAAPSRATDLTGLPPTYLSTMELDPL 261 (317)
T ss_dssp EEEEESCCCCTTCCSHHHHHCSSCSSCCHHHHHHHHHHHHCTTCCCTTCSCCCTTTCGGGCSCCTTCCCEEEEEETTCTT
T ss_pred ccccccccccccccccccccccccchhhhhhhHHHHhhhccccccCCCCchhccccCchhhhhccCCCCeEEEECCCCCC
Confidence 3332222111000 0000
Q ss_pred -chHHHHHHHHHhCCCcEEEEEeCCCCccCCCc---ccHHHHHHHHHHHHHHHhc
Q 005240 646 -FQAERFFDALKGHGALSRLVLLPFEHHVYAAR---ENVMHVIWETDRWLQKYCL 696 (706)
Q Consensus 646 -~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~---~~~~~~~~~~~~f~~~~l~ 696 (706)
-+..+|+++|++.|+++++++|||++|.|... ....+..+++++||+++|+
T Consensus 262 ~~~~~~~~~~L~~~G~~v~~~~~~g~~H~f~~~~~~~~~~~~~~~~~~~l~r~Lr 316 (317)
T d1lzla_ 262 RDEGIEYALRLLQAGVSVELHSFPGTFHGSALVATAAVSERGAAEALTAIRRGLR 316 (317)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEETTCCTTGGGSTTSHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHCCCCEEEEEECcCccCCcccCCchHHHHHHHHHHHHHHHHhC
Confidence 03348999999999999999999999988532 2234677889999999986
|
| >d1l7aa_ c.69.1.25 (A:) Cephalosporin C deacetylase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetyl xylan esterase-like domain: Cephalosporin C deacetylase species: Bacillus subtilis [TaxId: 1423]
Probab=99.73 E-value=1.3e-16 Score=161.55 Aligned_cols=194 Identities=14% Similarity=0.091 Sum_probs=138.0
Q ss_pred CCCCceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCe
Q 005240 477 LASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRF 556 (706)
Q Consensus 477 ~~~~~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~ 556 (706)
...++.+.|+|++.||..|+++++.|++ .+|.|+||++||++.. .......+..|+++||
T Consensus 51 ~~~~~~~~v~~~~~dg~~i~~~l~~P~~-----~~~~P~vv~~HG~~~~---------------~~~~~~~~~~la~~Gy 110 (318)
T d1l7aa_ 51 ADGVKVYRLTYKSFGNARITGWYAVPDK-----EGPHPAIVKYHGYNAS---------------YDGEIHEMVNWALHGY 110 (318)
T ss_dssp CSSEEEEEEEEEEGGGEEEEEEEEEESS-----CSCEEEEEEECCTTCC---------------SGGGHHHHHHHHHTTC
T ss_pred CCCeEEEEEEEECCCCcEEEEEEEecCC-----CCCceEEEEecCCCCC---------------ccchHHHHHHHHHCCC
Confidence 3456789999999999999999999986 3468999999996421 0112245677899999
Q ss_pred EEEEcCCCCcCCCCCCCC-----------------chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHH
Q 005240 557 AVLAGPSIPIIGEGDKLP-----------------NDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHL 619 (706)
Q Consensus 557 ~v~~~~~~~~~g~g~~~~-----------------~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~ 619 (706)
+|+..+.+|....+.... ........+.|...+++++..++.+|+.+|+++|+|+||.+++.+
T Consensus 111 ~vi~~D~rG~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~v~~~~i~~~G~s~Gg~~~~~~ 190 (318)
T d1l7aa_ 111 ATFGMLVRGQQRSEDTSISPHGHALGWMTKGILDKDTYYYRGVYLDAVRALEVISSFDEVDETRIGVTGGSQGGGLTIAA 190 (318)
T ss_dssp EEEEECCTTTSSSCCCCCCSSCCSSSSTTTTTTCTTTCHHHHHHHHHHHHHHHHHHSTTEEEEEEEEEEETHHHHHHHHH
T ss_pred EEEEEeeCCCCCCCCCcccchhhhhcchhhchhhhhhhhhHHHHHHHHHHHHHHHhcccccCcceEEEeeccccHHHHHH
Confidence 999977775432211110 011234567899999999999999999999999999999999999
Q ss_pred HHhCCCceeEEEeccCCCCCC--------CC---------------------------------------Ccc-------
Q 005240 620 LAHAPHLFCCGIARSGSYNKT--------LT---------------------------------------PFG------- 645 (706)
Q Consensus 620 ~~~~p~~~~a~v~~~~~~d~~--------~~---------------------------------------~~~------- 645 (706)
+...+ +++++++..|..... .. |..
T Consensus 191 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~Lii~G~~D 269 (318)
T d1l7aa_ 191 AALSD-IPKAAVADYPYLSNFERAIDVALEQPYLEINSFFRRNGSPETEVQAMKTLSYFDIMNLADRVKVPVLMSIGLID 269 (318)
T ss_dssp HHHCS-CCSEEEEESCCSCCHHHHHHHCCSTTTTHHHHHHHHSCCHHHHHHHHHHHHTTCHHHHGGGCCSCEEEEEETTC
T ss_pred hhcCc-ccceEEEeccccccHHHHhhcccccccchhhhhhhccccccccccccccccccccccccccCCCCEEEEEECCC
Confidence 99995 566666665543211 00 000
Q ss_pred --chHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHhc
Q 005240 646 --FQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCL 696 (706)
Q Consensus 646 --~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~~~~l~ 696 (706)
...+...+..++.+.++++++||+++|.+. .+..+++++||++||+
T Consensus 270 ~~vp~~~~~~~~~~l~~~~~l~~~~~~gH~~~-----~~~~~~~~~fl~~~Lk 317 (318)
T d1l7aa_ 270 KVTPPSTVFAAYNHLETKKELKVYRYFGHEYI-----PAFQTEKLAFFKQILK 317 (318)
T ss_dssp SSSCHHHHHHHHHHCCSSEEEEEETTCCSSCC-----HHHHHHHHHHHHHHHC
T ss_pred CCcCHHHHHHHHHHcCCCcEEEEECCCCCCCc-----HHHHHHHHHHHHHhCC
Confidence 001122233344567899999999999764 3677899999999996
|
| >d2jbwa1 c.69.1.41 (A:8-367) 2,6-dihydropseudooxynicotine hydrolase {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: 2,6-dihydropseudooxynicotine hydrolase-like domain: 2,6-dihydropseudooxynicotine hydrolase species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=99.73 E-value=4.3e-17 Score=167.81 Aligned_cols=189 Identities=17% Similarity=0.184 Sum_probs=134.2
Q ss_pred CceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEE
Q 005240 480 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 559 (706)
Q Consensus 480 ~~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~ 559 (706)
...|.|.++. +|..|+++++.|++ .+|.|+||++||.. +........++.|+++||+|+
T Consensus 104 ~~~e~v~ip~-dg~~l~g~l~~P~~-----~~~~P~Vi~~hG~~---------------~~~e~~~~~~~~l~~~G~~vl 162 (360)
T d2jbwa1 104 PPAERHELVV-DGIPMPVYVRIPEG-----PGPHPAVIMLGGLE---------------STKEESFQMENLVLDRGMATA 162 (360)
T ss_dssp SCEEEEEEEE-TTEEEEEEEECCSS-----SCCEEEEEEECCSS---------------CCTTTTHHHHHHHHHTTCEEE
T ss_pred CCeEEeecCc-CCcccceEEEecCC-----CCCceEEEEeCCCC---------------ccHHHHHHHHHHHHhcCCEEE
Confidence 4678888885 89999999999975 23689999999842 111122345778899999999
Q ss_pred EcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCCC
Q 005240 560 AGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNK 639 (706)
Q Consensus 560 ~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d~ 639 (706)
..+.+| +|.+............++..+++|+..+..+|++||+|+|+||||++|+.++...| +++|+|+.+|..+.
T Consensus 163 ~~D~~G---~G~s~~~~~~~~~~~~~~~~v~d~l~~~~~vd~~rI~l~G~S~GG~~Al~~A~~~p-ri~a~V~~~~~~~~ 238 (360)
T d2jbwa1 163 TFDGPG---QGEMFEYKRIAGDYEKYTSAVVDLLTKLEAIRNDAIGVLGRSLGGNYALKSAACEP-RLAACISWGGFSDL 238 (360)
T ss_dssp EECCTT---SGGGTTTCCSCSCHHHHHHHHHHHHHHCTTEEEEEEEEEEETHHHHHHHHHHHHCT-TCCEEEEESCCSCS
T ss_pred EEcccc---ccccCccccccccHHHHHHHHHHHHHhcccccccceeehhhhcccHHHHHHhhcCC-CcceEEEEcccccH
Confidence 977764 34332211111112345567889999998899999999999999999999999995 79999999998764
Q ss_pred CCC------------------------------------------Ccc--------c---hHHHHHHHHHhCCCcEEEEE
Q 005240 640 TLT------------------------------------------PFG--------F---QAERFFDALKGHGALSRLVL 666 (706)
Q Consensus 640 ~~~------------------------------------------~~~--------~---~~~~~~~~l~~~~~~~~~~~ 666 (706)
... |.. . ..+++++++.. ...++++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~Lii~G~~D~vp~~~~~~l~~~~~~--~~~~l~~ 316 (360)
T d2jbwa1 239 DYWDLETPLTKESWKYVSKVDTLEEARLHVHAALETRDVLSQIACPTYILHGVHDEVPLSFVDTVLELVPA--EHLNLVV 316 (360)
T ss_dssp TTGGGSCHHHHHHHHHHTTCSSHHHHHHHHHHHTCCTTTGGGCCSCEEEEEETTSSSCTHHHHHHHHHSCG--GGEEEEE
T ss_pred HHHhhhhhhhhHHHHHhccCCchHHHHHHHHhhcchhhhHhhCCCCEEEEEeCCCCcCHHHHHHHHHhcCC--CCeEEEE
Confidence 321 000 0 11155555533 3578899
Q ss_pred eCCCCccCCCcccHHHHHHHHHHHHHHHhcc
Q 005240 667 LPFEHHVYAARENVMHVIWETDRWLQKYCLS 697 (706)
Q Consensus 667 ~~~~~H~~~~~~~~~~~~~~~~~f~~~~l~~ 697 (706)
+++++|.... ........+.+||+++|..
T Consensus 317 ~~~g~H~~~~--~~~~~~~~i~dWl~~~L~~ 345 (360)
T d2jbwa1 317 EKDGDHCCHN--LGIRPRLEMADWLYDVLVA 345 (360)
T ss_dssp ETTCCGGGGG--GTTHHHHHHHHHHHHHHTS
T ss_pred ECCCCcCCCc--ChHHHHHHHHHHHHHHhcc
Confidence 9999996542 3346678899999999964
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.72 E-value=9.7e-17 Score=159.23 Aligned_cols=240 Identities=11% Similarity=0.034 Sum_probs=144.2
Q ss_pred ceEEEEccCC-CceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCC
Q 005240 157 AQLVLGSLDG-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIP 234 (706)
Q Consensus 157 ~~l~~~~l~g-~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p 234 (706)
++||+++++| ++++|+.. +....++|||||++|+|........ ...+|+++++.+++.++|+........+
T Consensus 21 ~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~-------~~~~i~~~~~~~g~~~~lt~~~~~~~~~ 93 (281)
T d1k32a2 21 DDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSL-------NTADLYFYNGENGEIKRITYFSGKSTGR 93 (281)
T ss_dssp TEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTC-------CEEEEEEEETTTTEEEECCCCCEEEETT
T ss_pred CcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCC-------CceEEEEEEecCCceEEeeecCCCccCc
Confidence 5899999965 99999888 7788999999999999988654321 1257999999999999998765432222
Q ss_pred cccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEE
Q 005240 235 VCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALV 314 (706)
Q Consensus 235 ~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~ 314 (706)
. .....+.|+|||+. |+|......... ...++.++. +++.++... .......|.+++..++
T Consensus 94 ~------~~~~~~~~spdg~~-l~~~~~~~~~~~------~~~~~~~~~---~~~~~~~~~---~~~~~~~~~~~~~~~~ 154 (281)
T d1k32a2 94 R------MFTDVAGFDPDGNL-IISTDAMQPFSS------MTCLYRVEN---DGINFVPLN---LGPATHILFADGRRVI 154 (281)
T ss_dssp E------ECSEEEEECTTCCE-EEEECTTSSSTT------CCEEEEEEG---GGTEEEECC---SCSCSEEEEETTEEEE
T ss_pred c------ccccccccCCCCCE-EEEEEccCCCcc------ceeeeeecC---CCceeEEec---CCccceeeecCCCeEE
Confidence 1 11336789999998 776643222111 123555555 444433322 2233456778877776
Q ss_pred EEeeccccc--------eEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecC
Q 005240 315 NETWYKTSQ--------TRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGR 386 (706)
Q Consensus 315 ~~~~~~~~~--------~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~ 386 (706)
+........ ...+...... ........... ....+.++++ .+++....
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-------~~~~~~~~~~--~~~~~~~~------------- 210 (281)
T d1k32a2 155 GRNTFELPHWKGYRGGTRGKIWIEVNS--GAFKKIVDMST-------HVSSPVIVGH--RIYFITDI------------- 210 (281)
T ss_dssp EESCSCCTTSTTCCSTTCCEEEEEEET--TEEEEEECCSS-------CCEEEEEETT--EEEEEECT-------------
T ss_pred EeeccccceeeeeccCCcceeeeeccc--cceeeccCCcc-------ccceeeeecc--ccceeccc-------------
Confidence 654322111 0011111111 01111111110 1112333433 33333211
Q ss_pred CCCCCCCCCceeeeecCCCceeeeecccchhhhhhhhhhccCCCceecccCCCEEEEEEecCCCCcEEEEEECCCCceeE
Q 005240 387 GFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQ 466 (706)
Q Consensus 387 g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~p~~v~~~~~~~~~~~~ 466 (706)
.....||++|+++++.++|+.... .....|||||++|+|... .+||++|+++++.++
T Consensus 211 -----~~~~~l~~~d~~g~~~~~lt~~~~-------------~~~~~~SpDG~~I~f~~~-----~~l~~~d~~~g~~~~ 267 (281)
T d1k32a2 211 -----DGFGQIYSTDLDGKDLRKHTSFTD-------------YYPRHLNTDGRRILFSKG-----GSIYIFNPDTEKIEK 267 (281)
T ss_dssp -----TSSCEEEEEETTSCSCEECCCCCS-------------SCEEEEEESSSCEEEEET-----TEEEEECTTTCCEEE
T ss_pred -----ccccceEEEeCCCCceEEeecCCC-------------cccccCcCCCCEEEEEeC-----CEEEEEECCCCCEEE
Confidence 234479999999988888875432 113479999999999653 469999999999999
Q ss_pred eec
Q 005240 467 ITN 469 (706)
Q Consensus 467 lt~ 469 (706)
|+.
T Consensus 268 i~~ 270 (281)
T d1k32a2 268 IEI 270 (281)
T ss_dssp CCC
T ss_pred ecc
Confidence 864
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.72 E-value=1.1e-15 Score=164.02 Aligned_cols=334 Identities=10% Similarity=0.014 Sum_probs=193.0
Q ss_pred cceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCcc
Q 005240 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~ 84 (706)
..++|+++.. ++.++++..+.. +..|.|||||++|||+++ .+||+++..+++..+++......
T Consensus 92 ~~~~l~d~~~----~~~~~l~~~~~~--~~~~~~SPDG~~ia~~~~-----------~~l~~~~~~~g~~~~~t~~~~~~ 154 (470)
T d2bgra1 92 ASYDIYDLNK----RQLITEERIPNN--TQWVTWSPVGHKLAYVWN-----------NDIYVKIEPNLPSYRITWTGKED 154 (470)
T ss_dssp EEEEEEETTT----TEECCSSCCCTT--EEEEEECSSTTCEEEEET-----------TEEEEESSTTSCCEECCSCCBTT
T ss_pred ceEEEEECCC----CcccccccCCcc--ccccccccCcceeeEeec-----------ccceEEECCCCceeeeeeccCCC
Confidence 4678999977 888888765554 889999999999999763 58999999999988887543221
Q ss_pred c--c------------ccccceEEecCCcEEEEEecCCCCCCCC-CC--CCCCCCceeecCCCcccccccchhccCCchh
Q 005240 85 L--N------------AVFGSFVWVNNSTLLIFTIPSSRRDPPK-KT--MVPLGPKIQSNEQKNIIISRMTDNLLKDEYD 147 (706)
Q Consensus 85 ~--~------------~~~~~~~wSpDg~~l~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 147 (706)
. + .....+.|||||++|+|........... .. ....... .... .+.+...
T Consensus 155 ~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~~~~~~~~~~~-------~~~~------~~~~~~~ 221 (470)
T d2bgra1 155 IIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQY-------PKTV------RVPYPKA 221 (470)
T ss_dssp TEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSS-------CEEE------EEECCBT
T ss_pred cccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceEEEEeeccCCCCC-------Ceee------eeccccc
Confidence 1 0 1123567999999999986432221100 00 0000000 0000 0000000
Q ss_pred hhhhhhcccceEEEEccCC-CceecC------------CC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEE
Q 005240 148 ESLFDYYTTAQLVLGSLDG-TAKDFG------------TP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQV 213 (706)
Q Consensus 148 ~~~~~~~~~~~l~~~~l~g-~~~~lt------------~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~ 213 (706)
+ .......++++++.+ ....+. .. ..+..+.|+++++.+++...+..... ...++.
T Consensus 222 g---~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~-------~~~~~~ 291 (470)
T d2bgra1 222 G---AVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYS-------VMDICD 291 (470)
T ss_dssp T---SCCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEE-------EEEEEE
T ss_pred c---ccCCcceEEEEECCCcceeeeccccccCCccccCCCCceEEEEEEcCCCceeEEEeeccCCce-------EEEEEE
Confidence 0 001235688888843 222111 11 34567889999987766555432110 124555
Q ss_pred EecCCCeeEEcccCCCCC-CCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCce
Q 005240 214 WTTDGKLVRELCDLPPAE-DIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPE 292 (706)
Q Consensus 214 ~~~~~~~~~~l~~~~~~~-~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 292 (706)
++..++..+.+....... ....+... .......|+++++..+++....++ ...||+++. +++..+
T Consensus 292 ~d~~tg~~~~~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~~~~~s~~dg---------~~~ly~~~~---~g~~~~ 357 (470)
T d2bgra1 292 YDESSGRWNCLVARQHIEMSTTGWVGR--FRPSEPHFTLDGNSFYKIISNEEG---------YRHICYFQI---DKKDCT 357 (470)
T ss_dssp EETTTTEEEECGGGCEEEECSSSCSSS--SSCCCCEECTTSSEEEEEEECTTS---------CEEEEEEET---TCSCCE
T ss_pred ecCCCCcEEEEEEEeeeeeeccceeec--ccCCCceeeecCCCcEEEEeccCc---------CceeEEEec---cCCcee
Confidence 566666666554321111 00111100 112245777888764555543332 125899988 788889
Q ss_pred EEeecccccccceecCCCceEEEEeeccc---cceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEE
Q 005240 293 ILHKLDLRFRSVSWCDDSLALVNETWYKT---SQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIA 369 (706)
Q Consensus 293 ~l~~~~~~~~~~~wspDg~~l~~~~~~~~---~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~ 369 (706)
+|+.....+..+ +++|++.|+|.+.... ...+||+++++++ .+.++|+..... ...+...+++||||++++.
T Consensus 358 ~lt~g~~~v~~~-~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~-~~~~~lt~~~~~---~~~~~~s~~fSpdgky~~~ 432 (470)
T d2bgra1 358 FITKGTWEVIGI-EALTSDYLYYISNEYKGMPGGRNLYKIQLSDY-TKVTCLSCELNP---ERCQYYSVSFSKEAKYYQL 432 (470)
T ss_dssp ESCCSSSCEEEE-EEECSSEEEEEESCGGGCTTCBEEEEEETTCT-TCEEESSTTTST---TTBCBEEEEECTTSSEEEE
T ss_pred eeccCCeeEEEE-EEECCCEEEEEEecCCCCcceEEEEEEECCCC-CceeEecccccC---CCCCEEEEEECCCCCEEEE
Confidence 998877777665 6677778888764321 4558999999985 345555422111 0112335789999999887
Q ss_pred eeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeeecccc
Q 005240 370 KIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNR 415 (706)
Q Consensus 370 ~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~ 415 (706)
.... .+.|...+++..+|+..+++..+.
T Consensus 433 ~~s~------------------~~~P~~~l~~~~~g~~v~~le~n~ 460 (470)
T d2bgra1 433 RCSG------------------PGLPLYTLHSSVNDKGLRVLEDNS 460 (470)
T ss_dssp EECS------------------BSSCEEEEEETTTTEEEEEEECCH
T ss_pred EecC------------------CCCCeEEEEECCCCCEEEEEeccH
Confidence 6532 234556677888888777776543
|
| >d1jjfa_ c.69.1.2 (A:) Feruloyl esterase domain of the cellulosomal xylanase z {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Feruloyl esterase domain of the cellulosomal xylanase z species: Clostridium thermocellum [TaxId: 1515]
Probab=99.72 E-value=7.7e-17 Score=157.91 Aligned_cols=184 Identities=15% Similarity=0.073 Sum_probs=119.8
Q ss_pred CCCceEEEEEEcc-CCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCC-
Q 005240 478 ASLQKEMIKYQRK-DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARR- 555 (706)
Q Consensus 478 ~~~~~~~~~~~~~-dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G- 555 (706)
...+.+.+++.+. +|.++++++|+|+++++++ ++|+||++||++.. ...+.................+
T Consensus 18 ~~g~~~~~~~~S~~~g~~~~~~v~lP~~y~~~~--~~Pvvv~lHG~g~~--------~~~~~~~~~~~~~~~~~~~~~~~ 87 (255)
T d1jjfa_ 18 PRGQVVNISYFSTATNSTRPARVYLPPGYSKDK--KYSVLYLLHGIGGS--------ENDWFEGGGRANVIADNLIAEGK 87 (255)
T ss_dssp CCCEEEEEEEEETTTTEEEEEEEEECTTCCTTS--CBCEEEEECCTTCC--------TTTTTTTTTCHHHHHHHHHHTTS
T ss_pred CceEEEEEEEEecCCCCEEEEEEEeCCCCCCCC--CCcEEEEEecCCCC--------hHHhhhhhHHHHHHHHHHHhhcc
Confidence 3457888888875 7899999999999998766 59999999997532 1122222111112223333333
Q ss_pred ---eEEEEcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHc--CCCCCCcEEEEEechHHHHHHHHHHhCCCceeEE
Q 005240 556 ---FAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRR--GVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCG 630 (706)
Q Consensus 556 ---~~v~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~--~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~ 630 (706)
+.+........ ...............+.+++.++.++ ..+|+++|+++|+|+||++++.++.++|++|+++
T Consensus 88 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~li~~i~~~~~~~~d~~~i~i~G~S~GG~~a~~~a~~~Pd~F~~v 163 (255)
T d1jjfa_ 88 IKPLIIVTPNTNAA----GPGIADGYENFTKDLLNSLIPYIESNYSVYTDREHRAIAGLSMGGGQSFNIGLTNLDKFAYI 163 (255)
T ss_dssp SCCCEEEEECCCCC----CTTCSCHHHHHHHHHHHTHHHHHHHHSCBCCSGGGEEEEEETHHHHHHHHHHHTCTTTCSEE
T ss_pred CCcceeeecccccc----cccccccccchHHHHHHHHHHHHHHhhccccccceeEeeeccchhHHHHHHHHhCCCcccEE
Confidence 33333222111 11111111122222233344555553 4488999999999999999999999999999999
Q ss_pred EeccCCCCCCCC----------------Cc---------cc-hHHHHHHHHHhCCCcEEEEEeCCCCccCC
Q 005240 631 IARSGSYNKTLT----------------PF---------GF-QAERFFDALKGHGALSRLVLLPFEHHVYA 675 (706)
Q Consensus 631 v~~~~~~d~~~~----------------~~---------~~-~~~~~~~~l~~~~~~~~~~~~~~~~H~~~ 675 (706)
++++|..+.... +. .+ ..++|+++|+++|+++++.+||+++|.+.
T Consensus 164 ~~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~i~~G~~D~~~~~~~~~~~~L~~~g~~~~~~~~~~ggH~~~ 234 (255)
T d1jjfa_ 164 GPISAAPNTYPNERLFPDGGKAAREKLKLLFIACGTNDSLIGFGQRVHEYCVANNINHVYWLIQGGGHDFN 234 (255)
T ss_dssp EEESCCTTSCCHHHHCTTTTHHHHHHCSEEEEEEETTCTTHHHHHHHHHHHHHTTCCCEEEEETTCCSSHH
T ss_pred EEEccCcCCcccccccccHHHHhhccCCcceEEeCCCCCCchHHHHHHHHHHHCCCCEEEEEECCCCcCHH
Confidence 999987764321 00 00 22489999999999999999999999764
|
| >d1mpxa2 c.69.1.21 (A:24-404) Alpha-amino acid ester hydrolase {Xanthomonas citri [TaxId: 346]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Xanthomonas citri [TaxId: 346]
Probab=99.70 E-value=4e-17 Score=169.27 Aligned_cols=150 Identities=14% Similarity=0.173 Sum_probs=109.0
Q ss_pred CceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcC--CCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeE
Q 005240 480 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYP--EDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFA 557 (706)
Q Consensus 480 ~~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hG--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~ 557 (706)
...+.|.++..||+.|.+.||+|++ .+|+|+||+.|+ +... +..... ...........+.|+++||+
T Consensus 22 ~~~~~v~i~~rDG~~L~~~v~~P~~-----~~~~P~il~~~pYg~~~~-----~~~~~~-~~~~~~~~~~~~~~a~~Gy~ 90 (381)
T d1mpxa2 22 YIKREVMIPMRDGVKLHTVIVLPKG-----AKNAPIVLTRTPYDASGR-----TERLAS-PHMKDLLSAGDDVFVEGGYI 90 (381)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEETT-----CCSEEEEEEEESSCHHHH-----TCSSCC-SSHHHHSCGGGHHHHHTTCE
T ss_pred ceEEEEEEECCCCCEEEEEEEEeCC-----CCCccEEEEEccCCCCCc-----cccccc-ccccccchhHHHHHHhCCCE
Confidence 4567899999999999999999976 236999999874 2100 000000 00000112345789999999
Q ss_pred EEEcCCCCcCCCCCCCCc--------hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeE
Q 005240 558 VLAGPSIPIIGEGDKLPN--------DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCC 629 (706)
Q Consensus 558 v~~~~~~~~~g~g~~~~~--------~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a 629 (706)
|+..+.||..+.+-.+.. .......+.|+.++++|+.++..+|..||+++|+||||++++++++..|..++|
T Consensus 91 vv~~d~RG~g~S~G~~~~~~~~~~~~~~~~~~~~~D~~~~i~w~~~~~~~~~~~vg~~G~SygG~~~~~~a~~~~~~l~a 170 (381)
T d1mpxa2 91 RVFQDVRGKYGSEGDYVMTRPLRGPLNPSEVDHATDAWDTIDWLVKNVSESNGKVGMIGSSYEGFTVVMALTNPHPALKV 170 (381)
T ss_dssp EEEEECTTSTTCCSCCCTTCCCSBTTBCSSCCHHHHHHHHHHHHHHHCTTEEEEEEEEEETHHHHHHHHHHTSCCTTEEE
T ss_pred EEEEecCccCCCCCceeccchhhhhcccchhHHHHHHHHHHHHHhhcCCcCccceeeecccHHHHHHHHHHhccccccce
Confidence 999888764332211110 112234578999999999999889999999999999999999999999999999
Q ss_pred EEeccCCCCCC
Q 005240 630 GIARSGSYNKT 640 (706)
Q Consensus 630 ~v~~~~~~d~~ 640 (706)
+|+.+|+.|..
T Consensus 171 ~v~~~~~~d~~ 181 (381)
T d1mpxa2 171 AVPESPMIDGW 181 (381)
T ss_dssp EEEESCCCCTT
T ss_pred eeeeccccccc
Confidence 99999988743
|
| >d1dina_ c.69.1.9 (A:) Dienelactone hydrolase {Pseudomonas sp., B13 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Dienelactone hydrolase domain: Dienelactone hydrolase species: Pseudomonas sp., B13 [TaxId: 306]
Probab=99.69 E-value=1.2e-16 Score=153.96 Aligned_cols=188 Identities=16% Similarity=0.129 Sum_probs=128.4
Q ss_pred eEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEc
Q 005240 482 KEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAG 561 (706)
Q Consensus 482 ~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~ 561 (706)
.|.|+|++.||..+++++..|.+ +|+|+||++|++. +.... ...+++.|+++||.|+.+
T Consensus 3 ~e~v~~~~~dg~~~~a~~~~P~~------~~~P~vl~~h~~~------------G~~~~---~~~~a~~lA~~Gy~vl~p 61 (233)
T d1dina_ 3 TEGISIQSYDGHTFGALVGSPAK------APAPVIVIAQEIF------------GVNAF---MRETVSWLVDQGYAAVCP 61 (233)
T ss_dssp CTTCCEECTTSCEECEEEECCSS------SSEEEEEEECCTT------------BSCHH---HHHHHHHHHHTTCEEEEE
T ss_pred ceEEEEEcCCCCEEEEEEECCCC------CCceEEEEeCCCC------------CCCHH---HHHHHHHHHhcCCcceee
Confidence 45688999999999999999964 3699999999642 11111 124578899999999998
Q ss_pred CCCCcCCCCCCCCchh--------------hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCce
Q 005240 562 PSIPIIGEGDKLPNDR--------------FVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLF 627 (706)
Q Consensus 562 ~~~~~~g~g~~~~~~~--------------~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~ 627 (706)
+.++..+.+....... .....+.|+.++++++.+.+. +..||+++|+|+||.+++.++.+. .+
T Consensus 62 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~aa~~~l~~~~~-~~~~i~~~G~s~Gg~~a~~~a~~~--~~ 138 (233)
T d1dina_ 62 DLYARQAPGTALDPQDERQREQAYKLWQAFDMEAGVGDLEAAIRYARHQPY-SNGKVGLVGYCLGGALAFLVAAKG--YV 138 (233)
T ss_dssp CGGGGTSTTCBCCTTSHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSTT-EEEEEEEEEETHHHHHHHHHHHHT--CS
T ss_pred eeccCCCcCcccChHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhCCC-CCCceEEEEecccccceeeccccc--cc
Confidence 8765544433222111 122457899999999987764 558999999999999999988775 35
Q ss_pred eEEEeccCCCCCC--------CCCcc---------c--hHHHHHHHHHhCCCcEEEEEeCCCCccCCCccc-------HH
Q 005240 628 CCGIARSGSYNKT--------LTPFG---------F--QAERFFDALKGHGALSRLVLLPFEHHVYAAREN-------VM 681 (706)
Q Consensus 628 ~a~v~~~~~~d~~--------~~~~~---------~--~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~-------~~ 681 (706)
.+++++.|..... ..|.. . +..+...++.+.++++++++|||++|+|..+.. ..
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~i~~Pvl~~~G~~D~~vp~e~~~~~~~~~~~~~~~~~~~y~ga~HgF~~~~~~~y~~~aa~ 218 (233)
T d1dina_ 139 DRAVGYYGVGLEKQLNKVPEVKHPALFHMGGQDHFVPAPSRQLITEGFGANPLLQVHWYEEAGHSFARTSSSGYVASAAA 218 (233)
T ss_dssp SEEEEESCSCGGGGGGGGGGCCSCEEEEEETTCTTSCHHHHHHHHHHHTTCTTEEEEEETTCCTTTTCTTSTTCCHHHHH
T ss_pred ceeccccccccccchhhhhccCCcceeeecccccCCCHHHHHHHHHHHhcCCCEEEEEECCCCcCCCCCCCccCCHHHHH
Confidence 5666665532110 11211 1 111333344456889999999999999864221 34
Q ss_pred HHHHHHHHHHHH
Q 005240 682 HVIWETDRWLQK 693 (706)
Q Consensus 682 ~~~~~~~~f~~~ 693 (706)
..++++++||.+
T Consensus 219 ~a~~r~~~ffa~ 230 (233)
T d1dina_ 219 LANERTLDFLAP 230 (233)
T ss_dssp HHHHHHHHHHGG
T ss_pred HHHHHHHHHHHc
Confidence 568899999976
|
| >d1jfra_ c.69.1.16 (A:) Lipase {Streptomyces exfoliatus [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Lipase domain: Lipase species: Streptomyces exfoliatus [TaxId: 1905]
Probab=99.68 E-value=2.8e-16 Score=153.86 Aligned_cols=176 Identities=15% Similarity=0.124 Sum_probs=126.3
Q ss_pred EEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCCCC
Q 005240 495 LTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLP 574 (706)
Q Consensus 495 i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~ 574 (706)
..+.||+|.+.. ++|+|+||++||..- ....+ ..++..|+++||+|+.++.++...
T Consensus 37 ~~~~ly~P~~~~---~g~~P~Vv~~HG~~g-----------~~~~~----~~~a~~lA~~Gy~V~~~d~~~~~~------ 92 (260)
T d1jfra_ 37 GGGTIYYPTSTA---DGTFGAVVISPGFTA-----------YQSSI----AWLGPRLASQGFVVFTIDTNTTLD------ 92 (260)
T ss_dssp CCEEEEEESCCT---TCCEEEEEEECCTTC-----------CGGGT----TTHHHHHHTTTCEEEEECCSSTTC------
T ss_pred cCEEEEEcCCCC---CCCccEEEEECCCCC-----------CHHHH----HHHHHHHHhCCCEEEEEeeCCCcC------
Confidence 357899998632 346999999999631 11111 246788999999999977653211
Q ss_pred chhhHHHHHHHHHHHHHHHHHc----CCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCCCCC-----CCcc
Q 005240 575 NDRFVEQLVSSAEAAVEEVVRR----GVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTL-----TPFG 645 (706)
Q Consensus 575 ~~~~~~~~~~D~~~~~~~l~~~----~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d~~~-----~~~~ 645 (706)
.......|+.++++++.+. +.||++||+++|+|+||.+++.++.+. .+++|+++.+|...... .|..
T Consensus 93 ---~~~~~~~d~~~~~~~l~~~~~~~~~vD~~rI~v~G~S~GG~~al~aa~~~-~~~~A~v~~~~~~~~~~~~~~~~P~l 168 (260)
T d1jfra_ 93 ---QPDSRGRQLLSALDYLTQRSSVRTRVDATRLGVMGHSMGGGGSLEAAKSR-TSLKAAIPLTGWNTDKTWPELRTPTL 168 (260)
T ss_dssp ---CHHHHHHHHHHHHHHHHHTSTTGGGEEEEEEEEEEETHHHHHHHHHHHHC-TTCSEEEEESCCCSCCCCTTCCSCEE
T ss_pred ---CchhhHHHHHHHHHHHHhhhhhhccccccceEEEeccccchHHHHHHhhh-ccchhheeeeccccccccccccccee
Confidence 1233457788889999885 459999999999999999999999998 58899999988654321 1111
Q ss_pred -----------c-hHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHhccCC
Q 005240 646 -----------F-QAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCLSNT 699 (706)
Q Consensus 646 -----------~-~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~~~~l~~~~ 699 (706)
. +..+++.++...+.+.+++.++|++|.+..... ..+.+.++.||++||+...
T Consensus 169 ~i~G~~D~~vp~~~~~~~~~~~~~~~~~~~~~~i~ga~H~~~~~~~-~~~~~~~~~wl~~~L~~d~ 233 (260)
T d1jfra_ 169 VVGADGDTVAPVATHSKPFYESLPGSLDKAYLELRGASHFTPNTSD-TTIAKYSISWLKRFIDSDT 233 (260)
T ss_dssp EEEETTCSSSCTTTTHHHHHHHSCTTSCEEEEEETTCCTTGGGSCC-HHHHHHHHHHHHHHHSCCG
T ss_pred EEecCCCCCCCHHHHHHHHHHhcccCCCEEEEEECCCccCCCCCCh-HHHHHHHHHHHHHHhcCch
Confidence 0 112444445556789999999999998865443 5677788999999997543
|
| >d1u4na_ c.69.1.2 (A:) Carboxylesterase {Alicyclobacillus acidocaldarius [TaxId: 405212]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Alicyclobacillus acidocaldarius [TaxId: 405212]
Probab=99.67 E-value=4.5e-16 Score=156.97 Aligned_cols=191 Identities=18% Similarity=0.147 Sum_probs=132.6
Q ss_pred CceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCC-eEE
Q 005240 480 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARR-FAV 558 (706)
Q Consensus 480 ~~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G-~~v 558 (706)
...+.+.+.. +|.+|...+|+|++.+ +|+|+|||+|||++..++. ......++.++++| +.|
T Consensus 44 ~~~~~~~~~~-~g~~i~~~~y~P~~~~----~~~Pvvv~iHGGg~~~g~~------------~~~~~~~~~~a~~~~~~v 106 (308)
T d1u4na_ 44 AEVREFDMDL-PGRTLKVRMYRPEGVE----PPYPALVYYHGGGWVVGDL------------ETHDPVCRVLAKDGRAVV 106 (308)
T ss_dssp SEEEEEEEEE-TTEEEEEEEEECTTCC----SSEEEEEEECCSTTTSCCT------------TTTHHHHHHHHHHHTSEE
T ss_pred CcEEEEEEec-CCceEEEEEEeccccC----CCCCEEEEEecCeeeeecc------------ccccchhhhhhhcccccc
Confidence 4567777776 8899999999998642 3589999999997643111 11224556667654 567
Q ss_pred EEcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcC---CCCCCcEEEEEechHHHHHHHHHHhCCC----ceeEEE
Q 005240 559 LAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRG---VADPSRIAVGGHSYGAFMTAHLLAHAPH----LFCCGI 631 (706)
Q Consensus 559 ~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~---~id~~~i~i~G~S~GG~~a~~~~~~~p~----~~~a~v 631 (706)
+.++++..... .......|+..+++|+.++. .+|++||+|+|+|+||+++++++....+ .+.+..
T Consensus 107 ~~v~Yrl~p~~--------~~p~~~~D~~~~~~~l~~~~~~~~~d~~ri~~~G~SaGG~la~~~~~~~~~~~~~~~~~~~ 178 (308)
T d1u4na_ 107 FSVDYRLAPEH--------KFPAAVEDAYDALQWIAERAADFHLDPARIAVGGDSAGGNLAAVTSILAKERGGPALAFQL 178 (308)
T ss_dssp EEECCCCTTTS--------CTTHHHHHHHHHHHHHHTTTGGGTEEEEEEEEEEETHHHHHHHHHHHHHHHHTCCCCCCEE
T ss_pred ccccccccccc--------ccccccchhhhhhhHHHHhHHhcCCCcceEEEeeccccchhHHHHHHhhhhccCCCccccc
Confidence 77777533221 22345778999999998753 4899999999999999999998866422 334444
Q ss_pred eccCCCCCCC--C-------------------------------------------------Ccc----------chHHH
Q 005240 632 ARSGSYNKTL--T-------------------------------------------------PFG----------FQAER 650 (706)
Q Consensus 632 ~~~~~~d~~~--~-------------------------------------------------~~~----------~~~~~ 650 (706)
...+..+... . |.. -+..+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~d~~~~Pp~li~~g~~D~l~~~~~~ 258 (308)
T d1u4na_ 179 LIYPSTGYDPAHPPASIEENAEGYLLTGGMSLWFLDQYLNSLEELTHPWFSPVLYPDLSGLPPAYIATAQYDPLRDVGKL 258 (308)
T ss_dssp EESCCCCCCTTSCCHHHHHTSSSSSSCHHHHHHHHHHHCSSGGGGGCTTTCGGGCSCCTTCCCEEEEEEEECTTHHHHHH
T ss_pred ccccccccccccccchhhhccccccccchhhhhhhhcccCccccccchhhhhhhchhhcCCCCeeEEecCcCCchHHHHH
Confidence 4444432110 0 000 03349
Q ss_pred HHHHHHhCCCcEEEEEeCCCCccCCCc----ccHHHHHHHHHHHHHHHh
Q 005240 651 FFDALKGHGALSRLVLLPFEHHVYAAR----ENVMHVIWETDRWLQKYC 695 (706)
Q Consensus 651 ~~~~l~~~~~~~~~~~~~~~~H~~~~~----~~~~~~~~~~~~f~~~~l 695 (706)
|+++|++.|+++++++|||++|.|..- ....+.++++.+||++.|
T Consensus 259 ~~~~L~~~G~~v~~~~~~g~~Hgf~~~~~~~~~a~~~~~~~~~fl~~~L 307 (308)
T d1u4na_ 259 YAEALNKAGVKVEIENFEDLIHGFAQFYSLSPGATKALVRIAEKLRDAL 307 (308)
T ss_dssp HHHHHHHTTCCEEEEEEEEEETTGGGGTTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCEEEEEECCCCEeCcccCCCCHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999987531 234578889999999876
|
| >d1jjia_ c.69.1.2 (A:) Carboxylesterase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.66 E-value=6.4e-16 Score=155.77 Aligned_cols=184 Identities=17% Similarity=0.074 Sum_probs=131.3
Q ss_pred CceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHH-CCeEE
Q 005240 480 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA-RRFAV 558 (706)
Q Consensus 480 ~~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~G~~v 558 (706)
.+.|.+++.+.+| +|+..+|.|+. +.|+|||+|||++..+ +...+ ..+++.+++ .||+|
T Consensus 54 ~~~~~~~i~~~~g-~i~~~iy~P~~-------~~P~il~iHGGg~~~g--------~~~~~----~~~~~~l~~~~g~~V 113 (311)
T d1jjia_ 54 ERVEDRTIKGRNG-DIRVRVYQQKP-------DSPVLVYYHGGGFVIC--------SIESH----DALCRRIARLSNSTV 113 (311)
T ss_dssp SEEEEEEEEETTE-EEEEEEEESSS-------SEEEEEEECCSTTTSC--------CTGGG----HHHHHHHHHHHTSEE
T ss_pred ceEEEEEEeCCCC-cEEEEEEcCCC-------CceEEEEEcCCCCccC--------Chhhh----hhhhhhhhhcCCcEE
Confidence 3567788888777 89999999953 3699999999976432 21111 234455554 79999
Q ss_pred EEcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHc---CCCCCCcEEEEEechHHHHHHHHHHhC----CCceeEEE
Q 005240 559 LAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRR---GVADPSRIAVGGHSYGAFMTAHLLAHA----PHLFCCGI 631 (706)
Q Consensus 559 ~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~---~~id~~~i~i~G~S~GG~~a~~~~~~~----p~~~~a~v 631 (706)
+.++|+...++. ....+.|+.++++|+.+. ..+|++||+|+|+|+||++++.++.+. .....+.+
T Consensus 114 v~v~Yrlap~~~--------~p~~~~d~~~a~~~~~~~~~~~~~d~~ri~v~G~SaGG~la~~~~~~~~~~~~~~~~~~~ 185 (311)
T d1jjia_ 114 VSVDYRLAPEHK--------FPAAVYDCYDATKWVAENAEELRIDPSKIFVGGDSAGGNLAAAVSIMARDSGEDFIKHQI 185 (311)
T ss_dssp EEEECCCTTTSC--------TTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred EEeccccccccc--------cchhhhhhhhhhhHHHHhHHHhCcChhHEEEEeeecCCcceeechhhhhhccccccceee
Confidence 999998654331 133467888899998875 358999999999999999998886443 23578888
Q ss_pred eccCCCCCCCC---------------------------------------Ccc--------------------chHHHHH
Q 005240 632 ARSGSYNKTLT---------------------------------------PFG--------------------FQAERFF 652 (706)
Q Consensus 632 ~~~~~~d~~~~---------------------------------------~~~--------------------~~~~~~~ 652 (706)
+..|..+.... |.. -+..+|+
T Consensus 186 l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~pP~li~~g~~D~l~d~~~~~~ 265 (311)
T d1jjia_ 186 LIYPVVNFVAPTPSLLEFGEGLWILDQKIMSWFSEQYFSREEDKFNPLASVIFADLENLPPALIITAEYDPLRDEGEVFG 265 (311)
T ss_dssp EESCCCCSSSCCHHHHHTSSSCSSCCHHHHHHHHHHHCSSGGGGGCTTTSGGGSCCTTCCCEEEEEEEECTTHHHHHHHH
T ss_pred eecceeeeccCcccccccccccccccHHHhhhhhhhcccccccccccccchhhcccccCCCEEEEEcCCCCChHHHHHHH
Confidence 88887664321 000 0234899
Q ss_pred HHHHhCCCcEEEEEeCCCCccCCCc----ccHHHHHHHHHHHH
Q 005240 653 DALKGHGALSRLVLLPFEHHVYAAR----ENVMHVIWETDRWL 691 (706)
Q Consensus 653 ~~l~~~~~~~~~~~~~~~~H~~~~~----~~~~~~~~~~~~f~ 691 (706)
++|++.|+++++++|||+.|.|..- ....++++++.+|+
T Consensus 266 ~~L~~~Gv~v~~~~~~g~~H~F~~~~~~~~~a~~a~~~i~~fl 308 (311)
T d1jjia_ 266 QMLRRAGVEASIVRYRGVLHGFINYYPVLKAARDAINQIAALL 308 (311)
T ss_dssp HHHHHTTCCEEEEEEEEEETTGGGGTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCEEEEEECCCCCccccCCCcCHHHHHHHHHHHHHh
Confidence 9999999999999999999987532 12346667777776
|
| >d3c8da2 c.69.1.2 (A:151-396) Enterochelin esterase, catalytic domain {Shigella flexneri 2a str. 2457T [TaxId: 198215]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Enterochelin esterase, catalytic domain species: Shigella flexneri 2a str. 2457T [TaxId: 198215]
Probab=99.65 E-value=4e-16 Score=151.76 Aligned_cols=198 Identities=13% Similarity=0.009 Sum_probs=123.9
Q ss_pred CCCCCCceEEEEEEcc-CCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHH
Q 005240 475 PTLASLQKEMIKYQRK-DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA 553 (706)
Q Consensus 475 ~~~~~~~~~~~~~~~~-dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 553 (706)
|+.....++++.+++. .|.+++.++|.|+++++. ++|+||++||+++. .... .......+.+
T Consensus 8 p~~~~~~~~~~~~~S~~lg~~~~~~v~~P~~~~~~---~~Pvvv~lhG~~~~-------------~~~~-~~~~l~~l~~ 70 (246)
T d3c8da2 8 PQAPEIPAKEIIWKSERLKNSRRVWIFTTGDVTAE---ERPLAVLLDGEFWA-------------QSMP-VWPVLTSLTH 70 (246)
T ss_dssp CCCCSSCCEEEEEEETTTTEEEEEEEEEC-----C---CCCEEEESSHHHHH-------------HTSC-CHHHHHHHHH
T ss_pred CCCCCCCcEEEEEECCCCCCEEEEEEEECCCCCCC---CCCEEEEeCCcchh-------------ccCc-HHHHHHHHHH
Confidence 3344557788888885 588999999999998643 49999999997421 1111 1123455666
Q ss_pred CC----eEEEEcCCCCcCCCCCC-CCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCcee
Q 005240 554 RR----FAVLAGPSIPIIGEGDK-LPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFC 628 (706)
Q Consensus 554 ~G----~~v~~~~~~~~~g~g~~-~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~ 628 (706)
.| ++++.++......+... .....+.....+++...++.. .+..+|+++++|+|+||||++|++++.++|++|+
T Consensus 71 ~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~v~~~-~~~~~d~~~~~i~G~S~GG~~al~~~~~~P~~F~ 149 (246)
T d3c8da2 71 RQQLPPAVYVLIDAIDTTHRAHELPCNADFWLAVQQELLPLVKVI-APFSDRADRTVVAGQSFGGLSALYAGLHWPERFG 149 (246)
T ss_dssp TTSSCSCEEEEECCCSHHHHHHHSSSCHHHHHHHHHTHHHHHHHH-SCCCCCGGGCEEEEETHHHHHHHHHHHHCTTTCC
T ss_pred hCCCCceEEeecccccccccccccCccHHHHHHHHHHhhhHHHHh-cccccCccceEEEecCchhHHHhhhhccCCchhc
Confidence 55 33443332211111000 112233333344444433322 1234789999999999999999999999999999
Q ss_pred EEEeccCCCCCCCCCcc---------------------------------chHHHHHHHHHhCCCcEEEEEeCCCCccCC
Q 005240 629 CGIARSGSYNKTLTPFG---------------------------------FQAERFFDALKGHGALSRLVLLPFEHHVYA 675 (706)
Q Consensus 629 a~v~~~~~~d~~~~~~~---------------------------------~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~ 675 (706)
|+++++|.+++...... -+.++|+++|+++|+++++.++|| +|.+.
T Consensus 150 a~~~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~D~~~~~~~~~l~~~L~~~g~~~~~~~~~G-gH~~~ 228 (246)
T d3c8da2 150 CVLSQSGSYWWPHRGGQQEGVLLEKLKAGEVSAEGLRIVLEAGIREPMIMRANQALYAQLHPIKESIFWRQVDG-GHDAL 228 (246)
T ss_dssp EEEEESCCTTTTCTTSSSCCHHHHHHHTTSSCCCSCEEEEEEESSCHHHHHHHHHHHHHTGGGTTSEEEEEESC-CSCHH
T ss_pred EEEcCCcccccccCCccchHHHHHHhhhhhhhccCCCeEEEecCCCcchhHHHHHHHHHHHHCCCCEEEEEeCC-CCChH
Confidence 99999998775431100 123489999999999999999998 79754
Q ss_pred CcccHHHHHHHHHHHHHHH
Q 005240 676 ARENVMHVIWETDRWLQKY 694 (706)
Q Consensus 676 ~~~~~~~~~~~~~~f~~~~ 694 (706)
.+.+.+.+.+.||-+.
T Consensus 229 ---~W~~~l~~~l~~l~~~ 244 (246)
T d3c8da2 229 ---CWRGGLMQGLIDLWQP 244 (246)
T ss_dssp ---HHHHHHHHHHHHHHGG
T ss_pred ---HHHHHHHHHHHHHHHh
Confidence 2445555555555443
|
| >d1ju3a2 c.69.1.21 (A:5-351) Bacterial cocaine esterase N-terminal domain {Rhodococcus sp. mb1 [TaxId: 51612]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Bacterial cocaine esterase N-terminal domain species: Rhodococcus sp. mb1 [TaxId: 51612]
Probab=99.65 E-value=5.5e-16 Score=159.17 Aligned_cols=138 Identities=19% Similarity=0.159 Sum_probs=103.1
Q ss_pred eEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEc
Q 005240 482 KEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAG 561 (706)
Q Consensus 482 ~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~ 561 (706)
.+.|.++-.||+.|.+.+|+|.+ .+|+|+||+.||-+... ... ... ....++.|+++||+|+..
T Consensus 5 ~~~v~ipmrDGv~L~~~vy~P~~-----~~~~P~il~~~pyg~~~----~~~---~~~----~~~~~~~~a~~GY~vv~~ 68 (347)
T d1ju3a2 5 ASNVMVPMRDGVRLAVDLYRPDA-----DGPVPVLLVRNPYDKFD----VFA---WST----QSTNWLEFVRDGYAVVIQ 68 (347)
T ss_dssp EEEEEEECTTSCEEEEEEEEECC-----SSCEEEEEEEESSCTTC----CHH---HHT----TSCCTHHHHHTTCEEEEE
T ss_pred EeCeEEECCCCCEEEEEEEEcCC-----CCCEEEEEEEcCCCCcc----ccC---cCc----ccHHHHHHHHCCCEEEEE
Confidence 46789999999999999999975 23699999999721100 000 001 112357889999999997
Q ss_pred CCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCCC
Q 005240 562 PSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNK 639 (706)
Q Consensus 562 ~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d~ 639 (706)
+.||..+ +............|..++++|+.+++..| .||+++|.||||++++++|++.|..++|++..++..|.
T Consensus 69 d~RG~g~---S~G~~~~~~~~~~d~~d~i~w~~~q~~~~-grVg~~G~SygG~~~~~~A~~~~~~l~aiv~~~~~~d~ 142 (347)
T d1ju3a2 69 DTRGLFA---SEGEFVPHVDDEADAEDTLSWILEQAWCD-GNVGMFGVSYLGVTQWQAAVSGVGGLKAIAPSMASADL 142 (347)
T ss_dssp ECTTSTT---CCSCCCTTTTHHHHHHHHHHHHHHSTTEE-EEEEECEETHHHHHHHHHHTTCCTTEEEBCEESCCSCT
T ss_pred eeCCccc---cCCccccccchhhhHHHHHHHHHhhccCC-cceEeeeccccccchhhhhhcccccceeeeeccccchh
Confidence 7765433 33222222333467888999999999887 69999999999999999999999999999999998774
|
| >d2fuka1 c.69.1.36 (A:3-220) XC6422 protein {Xanthomonas campestris [TaxId: 339]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Atu1826-like domain: XC6422 protein species: Xanthomonas campestris [TaxId: 339]
Probab=99.65 E-value=3.1e-15 Score=140.58 Aligned_cols=194 Identities=12% Similarity=0.082 Sum_probs=134.3
Q ss_pred ceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEE
Q 005240 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 560 (706)
Q Consensus 481 ~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~ 560 (706)
+.+.+++.+.+| .|++.+..|..-. ..+.+++|++|+.|... + ...+......++.|+++||.|+.
T Consensus 7 ~~~~l~i~gp~G-~l~~~~~~p~~~~---~~~~~~~vl~Hph~~~G---------G-~~~~~~~~~la~~l~~~G~~vlr 72 (218)
T d2fuka1 7 ESAALTLDGPVG-PLDVAVDLPEPDV---AVQPVTAIVCHPLSTEG---------G-SMHNKVVTMAARALRELGITVVR 72 (218)
T ss_dssp SCEEEEEEETTE-EEEEEEECCCTTS---CCCSEEEEEECSCTTTT---------C-STTCHHHHHHHHHHHTTTCEEEE
T ss_pred CceEEEEeCCCc-cEEEEEEcCCCCC---CCCCcEEEEECCCCCCC---------c-CCCChHHHHHHHHHHHcCCeEEE
Confidence 456788888888 7999999996522 22357888899654211 1 01111112456778999999999
Q ss_pred cCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCCCC
Q 005240 561 GPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKT 640 (706)
Q Consensus 561 ~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d~~ 640 (706)
.|++ |+|.+...........+|+.++++|+.++. +..+++++|+||||.+++.++.+. ..+++|+.+|..+..
T Consensus 73 fd~R---G~G~S~g~~~~~~~~~~D~~a~~~~~~~~~--~~~~v~l~G~S~Gg~va~~~a~~~--~~~~lil~ap~~~~~ 145 (218)
T d2fuka1 73 FNFR---SVGTSAGSFDHGDGEQDDLRAVAEWVRAQR--PTDTLWLAGFSFGAYVSLRAAAAL--EPQVLISIAPPAGRW 145 (218)
T ss_dssp ECCT---TSTTCCSCCCTTTHHHHHHHHHHHHHHHHC--TTSEEEEEEETHHHHHHHHHHHHH--CCSEEEEESCCBTTB
T ss_pred eecC---CCccCCCccCcCcchHHHHHHHHHHHhhcc--cCceEEEEEEcccchhhhhhhccc--ccceEEEeCCcccch
Confidence 7776 556555543344566889999999998874 457899999999999999888775 357888888765422
Q ss_pred C-------CCcc---------chHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHhcc
Q 005240 641 L-------TPFG---------FQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCLS 697 (706)
Q Consensus 641 ~-------~~~~---------~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~~~~l~~ 697 (706)
. .|.. ...+.+.+.+.+...+.+++++||++|.|.. ...++.+.+.+|++++|..
T Consensus 146 ~~~~~~~~~P~Lvi~G~~D~~vp~~~~~~l~~~~~~~~~l~~i~ga~H~f~~--~~~~l~~~~~~~v~~~l~~ 216 (218)
T d2fuka1 146 DFSDVQPPAQWLVIQGDADEIVDPQAVYDWLETLEQQPTLVRMPDTSHFFHR--KLIDLRGALQHGVRRWLPA 216 (218)
T ss_dssp CCTTCCCCSSEEEEEETTCSSSCHHHHHHHHTTCSSCCEEEEETTCCTTCTT--CHHHHHHHHHHHHGGGCSS
T ss_pred hhhccccccceeeEecCCCcCcCHHHHHHHHHHccCCceEEEeCCCCCCCCC--CHHHHHHHHHHHHHHhcCC
Confidence 1 1221 1122444444455667899999999999875 3456888999999999864
|
| >d2b9va2 c.69.1.21 (A:50-434) Alpha-amino acid ester hydrolase {Acetobacter pasteurianus [TaxId: 438]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Acetobacter pasteurianus [TaxId: 438]
Probab=99.63 E-value=2.2e-15 Score=156.48 Aligned_cols=153 Identities=16% Similarity=0.181 Sum_probs=107.9
Q ss_pred CCceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEE
Q 005240 479 SLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAV 558 (706)
Q Consensus 479 ~~~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v 558 (706)
....+.|.++..||+.|.+.||+|++ .+|+|+||+.|+=...+ ........ ..........++.|+++||+|
T Consensus 25 ~~~~~~v~ipmrDG~~L~~~v~~P~~-----~~~~P~il~~tpY~~~~--~~~~~~~~-~~~~~~~~~~~~~~a~~Gy~v 96 (385)
T d2b9va2 25 DYIKREVMVPMRDGVKLYTVIVIPKN-----ARNAPILLTRTPYNAKG--RANRVPNA-LTMREVLPQGDDVFVEGGYIR 96 (385)
T ss_dssp SEEEEEEEEECTTSCEEEEEEEEETT-----CCSEEEEEEEESSCHHH--HTCSSTTC-SSHHHHSCGGGHHHHHTTCEE
T ss_pred CCeEeEEEEECCCCCEEEEEEEEcCC-----CCceeEEEEEccCCCCC--ccccCCcc-cccccccchHHHHHHhCCcEE
Confidence 35677899999999999999999976 23699999875310000 00000000 000001123457899999999
Q ss_pred EEcCCCCcCCCCCCCCc--------hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEE
Q 005240 559 LAGPSIPIIGEGDKLPN--------DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCG 630 (706)
Q Consensus 559 ~~~~~~~~~g~g~~~~~--------~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~ 630 (706)
+..+.||..+.+-.+.. ..+......|..++|+|+.++..++..||+++|+||||+++++++.+.|..++|+
T Consensus 97 v~~d~RG~g~S~G~~~~~~~~~~~~~~~~~~e~~D~~~~i~w~~~q~~~~~g~vg~~G~SygG~~~~~~a~~~~~~l~a~ 176 (385)
T d2b9va2 97 VFQDIRGKYGSQGDYVMTRPPHGPLNPTKTDETTDAWDTVDWLVHNVPESNGRVGMTGSSYEGFTVVMALLDPHPALKVA 176 (385)
T ss_dssp EEEECTTSTTCCSCCCTTCCCSBTTBCSSCCHHHHHHHHHHHHHHSCTTEEEEEEEEEEEHHHHHHHHHHTSCCTTEEEE
T ss_pred EEEcCCcccCCCCceeeccccccccccchhhHHHHHHHHHHHHHhccCccccceeeccccHHHHHHHHHHhccCCcceEE
Confidence 99888765443322221 1122345799999999999998788899999999999999999999999999999
Q ss_pred EeccCCCCC
Q 005240 631 IARSGSYNK 639 (706)
Q Consensus 631 v~~~~~~d~ 639 (706)
+..+++.+.
T Consensus 177 ~~~~~~~d~ 185 (385)
T d2b9va2 177 APESPMVDG 185 (385)
T ss_dssp EEEEECCCT
T ss_pred EEecccccc
Confidence 999887663
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=2.1e-13 Score=138.92 Aligned_cols=289 Identities=13% Similarity=0.108 Sum_probs=172.7
Q ss_pred CeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceee-cccCCCccccccccceEEecCC
Q 005240 20 PEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKP-LFESPDICLNAVFGSFVWVNNS 98 (706)
Q Consensus 20 ~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~-lt~~~~~~~~~~~~~~~wSpDg 98 (706)
..+++..+.....+..++|||||++||... + ..|.++|+..+.... +.......-...+..++|+|||
T Consensus 41 ~~~~~~~~~H~~~V~~v~fs~~g~~latg~---------d--g~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg 109 (337)
T d1gxra_ 41 HARQINTLNHGEVVCAVTISNPTRHVYTGG---------K--GCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG 109 (337)
T ss_dssp EEEEEEEECCSSCCCEEEECSSSSEEEEEC---------B--SEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTS
T ss_pred CceEEEECCCCCcEEEEEECCCCCEEEEEE---------C--CEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCC
Confidence 445555554455788999999999998743 2 357777877543222 2110000001236789999999
Q ss_pred cEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCC-Cc---eecCCC
Q 005240 99 TLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TA---KDFGTP 174 (706)
Q Consensus 99 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g-~~---~~lt~~ 174 (706)
++|+..+.+ +.|.++++.. .. ..+...
T Consensus 110 ~~l~s~~~d-------------------------------------------------g~i~iwd~~~~~~~~~~~~~~~ 140 (337)
T d1gxra_ 110 CTLIVGGEA-------------------------------------------------STLSIWDLAAPTPRIKAELTSS 140 (337)
T ss_dssp SEEEEEESS-------------------------------------------------SEEEEEECCCC--EEEEEEECS
T ss_pred CEEEEeecc-------------------------------------------------cccccccccccccccccccccc
Confidence 998876421 4677777743 22 222222
Q ss_pred -ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCC
Q 005240 175 -AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADK 253 (706)
Q Consensus 175 -~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg 253 (706)
..+..+.|+||+..++..... ..+.+|++.+++......... ..+..+.|++++
T Consensus 141 ~~~v~~~~~~~~~~~l~s~~~d-------------~~i~~~~~~~~~~~~~~~~~~------------~~v~~l~~s~~~ 195 (337)
T d1gxra_ 141 APACYALAISPDSKVCFSCCSD-------------GNIAVWDLHNQTLVRQFQGHT------------DGASCIDISNDG 195 (337)
T ss_dssp SSCEEEEEECTTSSEEEEEETT-------------SCEEEEETTTTEEEEEECCCS------------SCEEEEEECTTS
T ss_pred cccccccccccccccccccccc-------------ccccccccccccccccccccc------------cccccccccccc
Confidence 567788999999988765443 378999998776544333211 124467899999
Q ss_pred CceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCC
Q 005240 254 PSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (706)
Q Consensus 254 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~ 333 (706)
.. ++... . ...+.++|+ ..++..........+..+.|+|+++.|+.... ...+.++|+.+
T Consensus 196 ~~-~~~~~-~-----------d~~v~i~d~---~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~----d~~i~i~d~~~ 255 (337)
T d1gxra_ 196 TK-LWTGG-L-----------DNTVRSWDL---REGRQLQQHDFTSQIFSLGYCPTGEWLAVGME----SSNVEVLHVNK 255 (337)
T ss_dssp SE-EEEEE-T-----------TSEEEEEET---TTTEEEEEEECSSCEEEEEECTTSSEEEEEET----TSCEEEEETTS
T ss_pred cc-ccccc-c-----------ccccccccc---ccceeecccccccceEEEEEcccccccceecc----ccccccccccc
Confidence 86 54332 1 124778887 44544444455677888999999998887642 22466677766
Q ss_pred CCCCceeeecCcccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeeecc
Q 005240 334 KDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWES 413 (706)
Q Consensus 334 ~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~ 413 (706)
++ ....... ......+.|+|||++|+....+ + .|..+|+.+++.......
T Consensus 256 ~~--~~~~~~~-------~~~i~~v~~s~~g~~l~s~s~D----g-----------------~i~iwd~~~~~~~~~~~~ 305 (337)
T d1gxra_ 256 PD--KYQLHLH-------ESCVLSLKFAYCGKWFVSTGKD----N-----------------LLNAWRTPYGASIFQSKE 305 (337)
T ss_dssp SC--EEEECCC-------SSCEEEEEECTTSSEEEEEETT----S-----------------EEEEEETTTCCEEEEEEC
T ss_pred cc--ccccccc-------ccccceEEECCCCCEEEEEeCC----C-----------------eEEEEECCCCCEEEEccC
Confidence 42 2222111 0112247789999988765311 1 355667777754333222
Q ss_pred cchhhhhhhhhhccCCCceecccCCCEEEEEEecCCCCcEEEEEEC
Q 005240 414 NREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSW 459 (706)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~p~~v~~~~~ 459 (706)
. .......||||++.|+....+. .|.+||+
T Consensus 306 ~------------~~v~~~~~s~d~~~l~t~s~D~----~I~vWdl 335 (337)
T d1gxra_ 306 S------------SSVLSCDISVDDKYIVTGSGDK----KATVYEV 335 (337)
T ss_dssp S------------SCEEEEEECTTSCEEEEEETTS----CEEEEEE
T ss_pred C------------CCEEEEEEeCCCCEEEEEeCCC----eEEEEEE
Confidence 1 1123468999998776543333 3777764
|
| >d1wb4a1 c.69.1.2 (A:803-1075) Feruloyl esterase domain of the cellulosomal xylanase y {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Feruloyl esterase domain of the cellulosomal xylanase y species: Clostridium thermocellum [TaxId: 1515]
Probab=99.60 E-value=2.6e-16 Score=155.83 Aligned_cols=147 Identities=14% Similarity=0.096 Sum_probs=96.3
Q ss_pred CCCceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHH----
Q 005240 478 ASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA---- 553 (706)
Q Consensus 478 ~~~~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---- 553 (706)
...+.+.+++++.+| +.+..+|+|++|++++ |+|+|+++||++.. ...+.............+.+
T Consensus 23 ~~g~v~~~~~~~~~~-~r~~~vylP~~y~~~k--~yPvl~~lhG~~g~--------~~~~~~~~~~~~~~~~~~~~~~~~ 91 (273)
T d1wb4a1 23 QAGRIVKETYTGING-TKSLNVYLPYGYDPNK--KYNIFYLMHGGGEN--------ENTIFSNDVKLQNILDHAIMNGEL 91 (273)
T ss_dssp SCCEEEEEEEEETTE-EEEEEEEECTTCCTTS--CCEEEEEECCTTCC--------TTSTTSTTTCHHHHHHHHHHHTSS
T ss_pred CCCeEEEEEEecCCC-eEEEEEEeCCCCCCCC--CceEEEEEeCCCCC--------cchhhhhccchhHHHHhhhhhhcc
Confidence 345789999999777 6799999999998765 69999999998521 11111111111111222222
Q ss_pred CCeEEEEcCCCCcCCCCCCCCchhhHHHHHHHHHHHH---------HHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCC
Q 005240 554 RRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAV---------EEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAP 624 (706)
Q Consensus 554 ~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~---------~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p 624 (706)
..+.|+.+...+..+.+.. +......+....+ +.+..+..+|++|++|+|+|+||++|+.+++++|
T Consensus 92 ~~~~v~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~G~S~GG~~a~~~a~~~p 166 (273)
T d1wb4a1 92 EPLIVVTPTFNGGNCTAQN-----FYQEFRQNVIPFVESKYSTYAESTTPQGIAASRMHRGFGGFAMGGLTTWYVMVNCL 166 (273)
T ss_dssp CCEEEEECCSCSTTCCTTT-----HHHHHHHTHHHHHHHHSCCSCSSCSHHHHHTTGGGEEEEEETHHHHHHHHHHHHHT
T ss_pred CCceeeccccCCCCCcccc-----chhcccccccchhhhhhhhhhhhhhhhcccCCccceEEEeeCCcchhhhhhhhcCC
Confidence 3688888776655444332 1111122222111 2222233479999999999999999999999999
Q ss_pred CceeEEEeccCCCCCC
Q 005240 625 HLFCCGIARSGSYNKT 640 (706)
Q Consensus 625 ~~~~a~v~~~~~~d~~ 640 (706)
++|+++++++|.+...
T Consensus 167 d~f~a~~~~sg~~~~~ 182 (273)
T d1wb4a1 167 DYVAYFMPLSGDYWYG 182 (273)
T ss_dssp TTCCEEEEESCCCCBS
T ss_pred CcceEEEEeCcccccC
Confidence 9999999999987644
|
| >d1sfra_ c.69.1.3 (A:) Antigen 85a {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen 85a species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.60 E-value=1.5e-14 Score=144.14 Aligned_cols=196 Identities=14% Similarity=0.030 Sum_probs=132.6
Q ss_pred CceEEEEEEcc-CCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEE
Q 005240 480 LQKEMIKYQRK-DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAV 558 (706)
Q Consensus 480 ~~~~~~~~~~~-dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v 558 (706)
++.+.+++.+. .|.+++..++.|. +++|+|+++||++... ....|... ....+.+.+.|++|
T Consensus 7 ~~v~~~~~~s~~~~r~~~~~v~~p~-------~~~Pvl~llhG~~~~~------d~~~~~~~----~~~~~~~~~~~~~~ 69 (288)
T d1sfra_ 7 LPVEYLQVPSPSMGRDIKVQFQSGG-------ANSPALYLLDGLRAQD------DFSGWDIN----TPAFEWYDQSGLSV 69 (288)
T ss_dssp CCCEEEEEEETTTTEEEEEEEECCS-------TTBCEEEEECCTTCCS------SSCHHHHH----CCHHHHHTTSSCEE
T ss_pred CEEEEEEEECCCCCcEEEEEEeCCC-------CCceEEEEcCCCCCCC------cchhhhhh----ccHHHHHHhCCCEE
Confidence 35567777764 7889998888773 2599999999964210 00011100 12345666799999
Q ss_pred EEcCCCCcCCCCCCCCc---------hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeE
Q 005240 559 LAGPSIPIIGEGDKLPN---------DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCC 629 (706)
Q Consensus 559 ~~~~~~~~~g~g~~~~~---------~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a 629 (706)
+.++......++..... ..+... -+.+.+.++.++..+|++|++|+|+||||++|+.+++++|++|++
T Consensus 70 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~el~~~i~~~~~~d~~r~~i~G~S~GG~~A~~~a~~~pd~f~a 146 (288)
T d1sfra_ 70 VMPVGGQSSFYSDWYQPACGKAGCQTYKWETF---LTSELPGWLQANRHVKPTGSAVVGLSMAASSALTLAIYHPQQFVY 146 (288)
T ss_dssp EEECCCTTCTTCBCSSCEEETTEEECCBHHHH---HHTHHHHHHHHHHCBCSSSEEEEEETHHHHHHHHHHHHCTTTEEE
T ss_pred EEeccCCCCCCccccCcccccccccchhHHHH---HHHHhHHHHHHhcCCCCCceEEEEEccHHHHHHHHHHhccccccE
Confidence 98766444332221111 112222 234556778787779999999999999999999999999999999
Q ss_pred EEeccCCCCCCCC----------------------------------Ccc------------------------------
Q 005240 630 GIARSGSYNKTLT----------------------------------PFG------------------------------ 645 (706)
Q Consensus 630 ~v~~~~~~d~~~~----------------------------------~~~------------------------------ 645 (706)
+++++|.++.... |..
T Consensus 147 v~~~Sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~G~~d~~~~~~~~~~ 226 (288)
T d1sfra_ 147 AGAMSGLLDPSQAMGPTLIGLAMGDAGGYKASDMWGPKEDPAWQRNDPLLNVGKLIANNTRVWVYCGNGKPSDLGGNNLP 226 (288)
T ss_dssp EEEESCCSCTTSTTHHHHHHHHHHHTTSCCHHHHHCSTTSTHHHHSCTTTTHHHHHHHTCEEEEECCCSCCBTTBCCSHH
T ss_pred EEEecCcccccccccchhhhhhhhhcccccHhhhcCCcchhhhHhcCHHHHHHHhhhcCCeEEEEeCCCCCCCccccccc
Confidence 9999998763310 000
Q ss_pred ---------chHHHHHHHHHhCCCcEEEEEeCCC-CccCCCcccHHHHHHHHHHHHHHHhccC
Q 005240 646 ---------FQAERFFDALKGHGALSRLVLLPFE-HHVYAARENVMHVIWETDRWLQKYCLSN 698 (706)
Q Consensus 646 ---------~~~~~~~~~l~~~~~~~~~~~~~~~-~H~~~~~~~~~~~~~~~~~f~~~~l~~~ 698 (706)
.+..+|.++|++.|++..+..++++ +|.+. .+...+.+.+.||.+.|...
T Consensus 227 ~~~~e~~~~~~~~~l~~~l~~~g~~~~~~~~~~~G~H~w~---~w~~~l~~~l~~l~~alg~~ 286 (288)
T d1sfra_ 227 AKFLEGFVRTSNIKFQDAYNAGGGHNGVFDFPDSGTHSWE---YWGAQLNAMKPDLQRALGAT 286 (288)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCSEEEECCSCCCSSHH---HHHHHHHHTHHHHHHHHTCC
T ss_pred cchhHHHHHHHHHHHHHHHHHCCCCeEEEEECCCCccChh---HHHHHHHHHHHHHHHhcCCC
Confidence 0112789999999999999999875 59764 24455667888888888653
|
| >d2h1ia1 c.69.1.14 (A:1-202) Carboxylesterase {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Carboxylesterase species: Bacillus cereus [TaxId: 1396]
Probab=99.59 E-value=3.1e-14 Score=133.58 Aligned_cols=170 Identities=14% Similarity=0.071 Sum_probs=117.9
Q ss_pred EEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCCCC---
Q 005240 498 TLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLP--- 574 (706)
Q Consensus 498 ~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~--- 574 (706)
.++.|.. + .+.|+||++||.+. ....+ ..++..+ +.++.|++++.....+.+..+.
T Consensus 4 ~i~~~~~-~----~~~P~vi~lHG~g~-----------~~~~~----~~~~~~l-~~~~~vv~p~~~~~~~~~~~~~~~~ 62 (202)
T d2h1ia1 4 HVFQKGK-D----TSKPVLLLLHGTGG-----------NELDL----LPLAEIV-DSEASVLSVRGNVLENGMPRFFRRL 62 (202)
T ss_dssp EEEECCS-C----TTSCEEEEECCTTC-----------CTTTT----HHHHHHH-HTTSCEEEECCSEEETTEEESSCEE
T ss_pred ccCCCCC-C----CCCCEEEEECCCCC-----------CHHHH----HHHHHHh-ccCCceeeecccccCCCCccccccC
Confidence 4666654 2 24699999999631 11111 1234444 4677777754432111111111
Q ss_pred -----chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCCCCCC-------
Q 005240 575 -----NDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLT------- 642 (706)
Q Consensus 575 -----~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d~~~~------- 642 (706)
.........+++...++++.++..+|++||+++|+|+||++++.++.++|++++++++.+|.......
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~d~~~i~~~G~S~Gg~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (202)
T d2h1ia1 63 AEGIFDEEDLIFRTKELNEFLDEAAKEYKFDRNNIVAIGYSNGANIAASLLFHYENALKGAVLHHPMVPRRGMQLANLAG 142 (202)
T ss_dssp ETTEECHHHHHHHHHHHHHHHHHHHHHTTCCTTCEEEEEETHHHHHHHHHHHHCTTSCSEEEEESCCCSCSSCCCCCCTT
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHhccccccceeeecccccchHHHHHHHhccccccceeeecCCCCccccccccccc
Confidence 11223345677888888888888899999999999999999999999999999999999997653321
Q ss_pred -Ccc------------chHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHH
Q 005240 643 -PFG------------FQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKY 694 (706)
Q Consensus 643 -~~~------------~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~~~~ 694 (706)
|.. .+.++++++|++.+.+++++.||+ +|.++ .+..+.+.+||++.
T Consensus 143 ~~~~i~~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~g-gH~~~-----~~~~~~~~~wl~k~ 201 (202)
T d2h1ia1 143 KSVFIAAGTNDPICSSAESEELKVLLENANANVTMHWENR-GHQLT-----MGEVEKAKEWYDKA 201 (202)
T ss_dssp CEEEEEEESSCSSSCHHHHHHHHHHHHTTTCEEEEEEESS-TTSCC-----HHHHHHHHHHHHHH
T ss_pred chhhcccccCCCccCHHHHHHHHHHHHHCCCCEEEEEECC-CCcCC-----HHHHHHHHHHHHHh
Confidence 100 123489999999999999999997 89875 35678999999985
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.58 E-value=4.2e-13 Score=135.00 Aligned_cols=282 Identities=10% Similarity=0.035 Sum_probs=166.5
Q ss_pred ccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeec-ccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 005240 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPL-FESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (706)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l-t~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~ 111 (706)
...++++|||++|||... ..++++++++++..++ +.+.. .+..+.|||||++|+..+.+
T Consensus 20 ~~~~a~~~~g~~l~~~~~-----------~~v~i~~~~~~~~~~~~~~H~~-----~v~~~~~sp~g~~latg~~d---- 79 (311)
T d1nr0a1 20 AVVLGNTPAGDKIQYCNG-----------TSVYTVPVGSLTDTEIYTEHSH-----QTTVAKTSPSGYYCASGDVH---- 79 (311)
T ss_dssp CCCCEECTTSSEEEEEET-----------TEEEEEETTCSSCCEEECCCSS-----CEEEEEECTTSSEEEEEETT----
T ss_pred eEEEEEcCCCCEEEEEeC-----------CEEEEEECCCCceeEEEcCCCC-----CEEEEEEeCCCCeEeccccC----
Confidence 445789999999999642 4688999987765554 33333 27889999999998866421
Q ss_pred CCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccC-CC-c--eecCCC-ceEeeeeeCCCC
Q 005240 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD-GT-A--KDFGTP-AVYTAVEPSPDQ 186 (706)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~-g~-~--~~lt~~-~~~~~~~~SpDG 186 (706)
+.|.++++. ++ . ..+... ..+..++|+|||
T Consensus 80 ---------------------------------------------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~ 114 (311)
T d1nr0a1 80 ---------------------------------------------GNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSES 114 (311)
T ss_dssp ---------------------------------------------SEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTS
T ss_pred ---------------------------------------------ceEeeeeeeccccccccccccccCccccccccccc
Confidence 567777873 32 2 223323 578899999999
Q ss_pred cEEEEEeeccCcccccccccccceEEEEecCCCee-EEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccC
Q 005240 187 KYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDR 265 (706)
Q Consensus 187 ~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~ 265 (706)
++|+..+... ...+.+|+++.++. .++.... ..+..+.|+|+++. ++.....
T Consensus 115 ~~l~~~~~~~-----------~~~~~v~~~~~~~~~~~l~~h~-------------~~v~~v~~~~~~~~-~l~sgs~-- 167 (311)
T d1nr0a1 115 KRIAAVGEGR-----------ERFGHVFLFDTGTSNGNLTGQA-------------RAMNSVDFKPSRPF-RIISGSD-- 167 (311)
T ss_dssp CEEEEEECCS-----------SCSEEEEETTTCCBCBCCCCCS-------------SCEEEEEECSSSSC-EEEEEET--
T ss_pred cccccccccc-----------cccccccccccccccccccccc-------------ccccccccccccee-eeccccc--
Confidence 9998776443 13567888875543 2222111 12457889999986 3322111
Q ss_pred CCCccccCccceeeeecCCCCCCCCceEE-eecccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecC
Q 005240 266 GDANVEVSPRDIIYTQPAEPAEGEKPEIL-HKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDR 344 (706)
Q Consensus 266 ~~~~~~~~~~~~l~~~d~~~~~~~~~~~l-~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~ 344 (706)
...|.++|+ .+++.... ......+..+.|+||++.|+....+ + .+.++|+.++ +....++.
T Consensus 168 ---------d~~i~i~d~---~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d--~--~v~~~d~~~~--~~~~~~~~ 229 (311)
T d1nr0a1 168 ---------DNTVAIFEG---PPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGD--G--TIVLYNGVDG--TKTGVFED 229 (311)
T ss_dssp ---------TSCEEEEET---TTBEEEEEECCCSSCEEEEEECTTSSEEEEEETT--S--CEEEEETTTC--CEEEECBC
T ss_pred ---------ccccccccc---cccccccccccccccccccccCcccccccccccc--c--cccccccccc--cccccccc
Confidence 124778888 44443333 3446678899999999988876422 2 3556666653 22222221
Q ss_pred cc-cccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeeecccchhhhhhhh
Q 005240 345 VF-ENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAV 423 (706)
Q Consensus 345 ~~-~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~ 423 (706)
.. ....+......+.|+|||++|+....+ + .|..+|+.+++..+.+..... +.
T Consensus 230 ~~~~~~~h~~~V~~~~~s~~~~~l~tgs~D----g-----------------~v~iwd~~t~~~~~~l~~~~~-----~~ 283 (311)
T d1nr0a1 230 DSLKNVAHSGSVFGLTWSPDGTKIASASAD----K-----------------TIKIWNVATLKVEKTIPVGTR-----IE 283 (311)
T ss_dssp TTSSSCSSSSCEEEEEECTTSSEEEEEETT----S-----------------EEEEEETTTTEEEEEEECCSS-----GG
T ss_pred cccccccccccccccccCCCCCEEEEEeCC----C-----------------eEEEEECCCCcEEEEEECCCC-----cc
Confidence 11 111111123357899999988765411 1 366678888876554433221 00
Q ss_pred hhccCCCceecccCCCEEEEEEecCCCCcEEEEEEC
Q 005240 424 ALVFGQGEEDINLNQLKILTSKESKTEITQYHILSW 459 (706)
Q Consensus 424 ~~~~~~~~~~~s~Dg~~l~~~~~~~~~p~~v~~~~~ 459 (706)
....++.+++..|+....+ ..|..||+
T Consensus 284 -----~~~~~~~~~~~~l~s~s~d----G~i~~wd~ 310 (311)
T d1nr0a1 284 -----DQQLGIIWTKQALVSISAN----GFINFVNP 310 (311)
T ss_dssp -----GCEEEEEECSSCEEEEETT----CCEEEEET
T ss_pred -----ceEEEEEecCCEEEEEECC----CEEEEEeC
Confidence 0123444555556544333 34777775
|
| >d2i3da1 c.69.1.36 (A:2-219) Hypothetical protein Atu1826 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Atu1826-like domain: Hypothetical protein Atu1826 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.58 E-value=8.7e-14 Score=131.85 Aligned_cols=193 Identities=17% Similarity=0.114 Sum_probs=135.7
Q ss_pred EEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCC
Q 005240 484 MIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPS 563 (706)
Q Consensus 484 ~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~ 563 (706)
+|.+.+.+| .|++++..|+. .+.|++|++||.|... +. ..+..-...+..|+++||.|+..|+
T Consensus 2 ev~i~g~~G-~Le~~~~~~~~------~~~~~~l~~Hp~p~~G--------G~--~~~~~~~~~a~~l~~~G~~~lrfn~ 64 (218)
T d2i3da1 2 EVIFNGPAG-RLEGRYQPSKE------KSAPIAIILHPHPQFG--------GT--MNNQIVYQLFYLFQKRGFTTLRFNF 64 (218)
T ss_dssp EEEEEETTE-EEEEEEECCSS------TTCCEEEEECCCGGGT--------CC--TTSHHHHHHHHHHHHTTCEEEEECC
T ss_pred cEEEeCCCc-cEEEEEeCCCC------CCCCEEEEECCCcCcC--------Cc--CCcHHHHHHHHHHHhcCeeEEEEec
Confidence 367888888 89998764432 2358999999875321 11 1111112356678899999999666
Q ss_pred CCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCCCCC--
Q 005240 564 IPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTL-- 641 (706)
Q Consensus 564 ~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d~~~-- 641 (706)
+ |.|.+....+......+|..++++|+..+...+ .++.+.|+|+||.+++.++.+. ....++++.++......
T Consensus 65 R---G~g~S~G~~~~~~~e~~d~~aa~~~~~~~~~~~-~~~~~~g~S~G~~~a~~~a~~~-~~~~~~~~~~~~~~~~~~~ 139 (218)
T d2i3da1 65 R---SIGRSQGEFDHGAGELSDAASALDWVQSLHPDS-KSCWVAGYSFGAWIGMQLLMRR-PEIEGFMSIAPQPNTYDFS 139 (218)
T ss_dssp T---TSTTCCSCCCSSHHHHHHHHHHHHHHHHHCTTC-CCEEEEEETHHHHHHHHHHHHC-TTEEEEEEESCCTTTSCCT
T ss_pred C---ccCCCccccccchhHHHHHHHHHhhhhcccccc-cceeEEeeehHHHHHHHHHHhh-ccccceeeccccccccchh
Confidence 5 566665555556677899999999999886543 5799999999999999999998 45556666666433211
Q ss_pred ------CCcc------------chHHHHHHHHHh-CCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHhccCCC
Q 005240 642 ------TPFG------------FQAERFFDALKG-HGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCLSNTS 700 (706)
Q Consensus 642 ------~~~~------------~~~~~~~~~l~~-~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~~~~l~~~~~ 700 (706)
.|.. -...++++.++. ++...+++++||++|.|.. ...++.+.+.+||+++|..+..
T Consensus 140 ~~~~~~~p~l~i~g~~D~~~~~~~~~~l~~~~~~~~~~~~~~~vi~gAdHfF~g--~~~~l~~~v~~~l~~~l~~~~~ 215 (218)
T d2i3da1 140 FLAPCPSSGLIINGDADKVAPEKDVNGLVEKLKTQKGILITHRTLPGANHFFNG--KVDELMGECEDYLDRRLNGELV 215 (218)
T ss_dssp TCTTCCSCEEEEEETTCSSSCHHHHHHHHHHHTTSTTCCEEEEEETTCCTTCTT--CHHHHHHHHHHHHHHHHTTCSS
T ss_pred hccccCCCceeeecccceecChHHHHHHHHHHhhccCCCccEEEeCCCCCCCcC--CHHHHHHHHHHHHHHhcCCCCC
Confidence 1110 022377777775 4577899999999999874 4578889999999999976554
|
| >d2gzsa1 c.69.1.38 (A:41-305) Enterobactin and salmochelin hydrolase IroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: IroE-like domain: Enterobactin and salmochelin hydrolase IroE species: Escherichia coli [TaxId: 562]
Probab=99.57 E-value=9.8e-16 Score=150.82 Aligned_cols=177 Identities=12% Similarity=0.039 Sum_probs=119.0
Q ss_pred CceEEEEEEccCC-eEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHH-HHHHHCCeE
Q 005240 480 LQKEMIKYQRKDG-VPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSS-LIFLARRFA 557 (706)
Q Consensus 480 ~~~~~~~~~~~dg-~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~G~~ 557 (706)
.+.+.+.+++.|| .++..+|++|+++++.+ +||+|+++||++.. .. ....+. +.....|++
T Consensus 11 ~~~~~~~~~s~dg~~~~~~~v~~P~~~~~~~--~yPvi~~lhG~~~~-------------~~--~~~~~~~~~~~~~~~~ 73 (265)
T d2gzsa1 11 YHFSATSFDSVDGTRHYRVWTAVPNTTAPAS--GYPILYMLDGNAVM-------------DR--LDDELLKQLSEKTPPV 73 (265)
T ss_dssp EEEEEEEEECTTSSCEEEEEEEEESSCCCTT--CEEEEEESSHHHHH-------------HH--CCHHHHHHHTTSCCCE
T ss_pred ceeEEEEEEcCCCCEEEEEEEEcCCCCCCCC--CceEEEEecCcchh-------------hh--HHHHHHHHHHhcCCCe
Confidence 4688999999987 58999999999998765 59999999997421 00 011122 333458898
Q ss_pred EEEcCCCCcCCCCCCC----------------C------chhhHHHHH-HHHHHHHHHHHHcCCCCCCcEEEEEechHHH
Q 005240 558 VLAGPSIPIIGEGDKL----------------P------NDRFVEQLV-SSAEAAVEEVVRRGVADPSRIAVGGHSYGAF 614 (706)
Q Consensus 558 v~~~~~~~~~g~g~~~----------------~------~~~~~~~~~-~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~ 614 (706)
|+...+++..+++... . ......... .....++.++.++..+|+++++|+|+||||+
T Consensus 74 vV~v~~~~~~~~~~~~r~~d~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~d~~~~~i~G~S~GG~ 153 (265)
T d2gzsa1 74 IVAVGYQTNLPFDLNSRAYDYTPAAESRKTDLHSGRFSRKSGGSNNFRQLLETRIAPKVEQGLNIDRQRRGLWGHSYGGL 153 (265)
T ss_dssp EEEEEESSSSSCCHHHHHHHTCCGGGGTTCSCC-----CCCCCHHHHHHHHHHTHHHHHTTTSCEEEEEEEEEEETHHHH
T ss_pred EEEecCCCCCcCcccccccccccccCcccccccccchhccccchHHHHHHHHHHHHHHHHHhcCCCcCceEEEeccHHHH
Confidence 8765444433221100 0 000011111 1223345566666668999999999999999
Q ss_pred HHHHHHHhCCCceeEEEeccCCCCCCC-----------------CCcc--------------------chHHHHHHHHHh
Q 005240 615 MTAHLLAHAPHLFCCGIARSGSYNKTL-----------------TPFG--------------------FQAERFFDALKG 657 (706)
Q Consensus 615 ~a~~~~~~~p~~~~a~v~~~~~~d~~~-----------------~~~~--------------------~~~~~~~~~l~~ 657 (706)
++++++.+. +.|.++++.+|...+.. .+.. -+..+++++|++
T Consensus 154 ~a~~~~~~~-~~f~~~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~~~~~~~l~~~L~~ 232 (265)
T d2gzsa1 154 FVLDSWLSS-SYFRSYYSASPSLGRGYDALLSRVTAVEPLQFCTKHLAIMEGSATQGDNRETHAVGVLSKIHTTLTILKD 232 (265)
T ss_dssp HHHHHHHHC-SSCSEEEEESGGGSTTHHHHHHHHHTSCTTTTTTCEEEEEECCC-----------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHcC-cccCEEEEECCcccccchhhhhccccccccccCCCcEEEEcCCcccccccccccchhHHHHHHHHHHHHH
Confidence 999988875 78888888888754321 0000 023389999999
Q ss_pred CCCcEEEEEeCCCCccC
Q 005240 658 HGALSRLVLLPFEHHVY 674 (706)
Q Consensus 658 ~~~~~~~~~~~~~~H~~ 674 (706)
+|+++++.+|||++|+.
T Consensus 233 ~g~~~~~~~~pG~~Hg~ 249 (265)
T d2gzsa1 233 KGVNAVFWDFPNLGHGP 249 (265)
T ss_dssp TTCCEEEEECTTCCHHH
T ss_pred CCCCEEEEEcCCCCcch
Confidence 99999999999999964
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.57 E-value=8e-13 Score=131.34 Aligned_cols=269 Identities=15% Similarity=0.083 Sum_probs=167.5
Q ss_pred cceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCcc
Q 005240 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~ 84 (706)
.+|.|.|+++ ++..+ .++.+.....++|||||++|+.+. .....|.++|+++++.........
T Consensus 12 ~~v~v~D~~t----~~~~~--~i~~g~~p~~va~spdG~~l~v~~---------~~~~~i~v~d~~t~~~~~~~~~~~-- 74 (301)
T d1l0qa2 12 DNISVIDVTS----NKVTA--TIPVGSNPMGAVISPDGTKVYVAN---------AHSNDVSIIDTATNNVIATVPAGS-- 74 (301)
T ss_dssp TEEEEEETTT----TEEEE--EEECSSSEEEEEECTTSSEEEEEE---------GGGTEEEEEETTTTEEEEEEECSS--
T ss_pred CEEEEEECCC----CeEEE--EEECCCCceEEEEeCCCCEEEEEE---------CCCCEEEEEECCCCceeeeeeccc--
Confidence 4689999977 65433 334555577899999999996543 334679999999887655432222
Q ss_pred ccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc
Q 005240 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (706)
Q Consensus 85 ~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l 164 (706)
.+..+.|++||+.+++.... ...+.+++.
T Consensus 75 ---~~~~~~~~~~~~~~~~~~~~------------------------------------------------~~~~~~~~~ 103 (301)
T d1l0qa2 75 ---SPQGVAVSPDGKQVYVTNMA------------------------------------------------SSTLSVIDT 103 (301)
T ss_dssp ---SEEEEEECTTSSEEEEEETT------------------------------------------------TTEEEEEET
T ss_pred ---cccccccccccccccccccc------------------------------------------------cceeeeccc
Confidence 25678999999987775421 145666777
Q ss_pred -CCC-ceecCCCceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCC
Q 005240 165 -DGT-AKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVRE 242 (706)
Q Consensus 165 -~g~-~~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~ 242 (706)
+++ ...+........+.++|||+.+++..... ..+.+++..+.......... .
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~-------------~ 158 (301)
T d1l0qa2 104 TSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGD------------KTVSVINTVTKAVINTVSVG-------------R 158 (301)
T ss_dssp TTTEEEEEEECSSSEEEEEECTTSSEEEEEETTT------------TEEEEEETTTTEEEEEEECC-------------S
T ss_pred ccceeeeeccccccceEEEeecCCCeeeeeeccc------------cceeeeeccccceeeecccC-------------C
Confidence 443 34444445667889999999998776542 46788888866544433222 1
Q ss_pred CCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeecccc
Q 005240 243 GMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTS 322 (706)
Q Consensus 243 g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~ 322 (706)
++..+.++||++. ++.. ..+. ..+.+++. ...+.............+.|++++..+++..... .
T Consensus 159 ~~~~~~~~~~~~~-~~~~-~~~~----------~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~-~ 222 (301)
T d1l0qa2 159 SPKGIAVTPDGTK-VYVA-NFDS----------MSISVIDT---VTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDK-Y 222 (301)
T ss_dssp SEEEEEECTTSSE-EEEE-ETTT----------TEEEEEET---TTTEEEEEEECSSEEEEEEECTTSSEEEEEEECS-S
T ss_pred CceEEEeeccccc-eeee-cccc----------cccccccc---cceeeeecccccCCcceeeccccccccccccccc-e
Confidence 2346789999986 5533 2211 12334443 3333333344455566788999999887654332 3
Q ss_pred ceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeec
Q 005240 323 QTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDI 402 (706)
Q Consensus 323 ~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~ 402 (706)
...|+++|+.+++ ........ .....+++||||++|++.... ...|..+|+
T Consensus 223 ~~~v~v~D~~t~~--~~~~~~~~-------~~~~~va~spdg~~l~va~~~--------------------~~~i~v~D~ 273 (301)
T d1l0qa2 223 FNTVSMIDTGTNK--ITARIPVG-------PDPAGIAVTPDGKKVYVALSF--------------------CNTVSVIDT 273 (301)
T ss_dssp CCEEEEEETTTTE--EEEEEECC-------SSEEEEEECTTSSEEEEEETT--------------------TTEEEEEET
T ss_pred eeeeeeeecCCCe--EEEEEcCC-------CCEEEEEEeCCCCEEEEEECC--------------------CCeEEEEEC
Confidence 4569999988842 22222111 011237789999998776421 124777899
Q ss_pred CCCceeeee
Q 005240 403 NTGSKERIW 411 (706)
Q Consensus 403 ~~g~~~~l~ 411 (706)
++++..+..
T Consensus 274 ~t~~~~~~~ 282 (301)
T d1l0qa2 274 ATNTITATM 282 (301)
T ss_dssp TTTEEEEEE
T ss_pred CCCeEEEEE
Confidence 888754443
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.53 E-value=6.4e-12 Score=129.29 Aligned_cols=312 Identities=11% Similarity=0.015 Sum_probs=171.1
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~ 111 (706)
.....++||||++++.... .......+||++|.++++......... ...+.|||||++|++........
T Consensus 22 p~~~~a~spdg~~~~~~~~-----~~~~~~~~v~v~D~~tg~~~~~~~~~~------~~~~a~SpDG~~l~va~~~~~~~ 90 (373)
T d2madh_ 22 PTNDEAPGADGRRSYINLP-----AHHSAIIQQWVLDAGSGSILGHVNGGF------LPNPVAAHSGSEFALASTSFSRI 90 (373)
T ss_pred CccccccCCCCCEEEEEcc-----cccCCCceEEEEECCCCCEEEEEeCCC------CccEEEcCCCCEEEEEeecCCcc
Confidence 3567789999999976532 111455789999999988665322221 34689999999999874321110
Q ss_pred CCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCCcee-cCCC--------ceEeeee
Q 005240 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKD-FGTP--------AVYTAVE 181 (706)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~~~-lt~~--------~~~~~~~ 181 (706)
. .....+.|.++|+ ++++.. +... .....+.
T Consensus 91 ~---------------------------------------~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (373)
T d2madh_ 91 A---------------------------------------KGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNA 131 (373)
T ss_pred c---------------------------------------ccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEE
Confidence 0 0002256888888 554432 2221 1234678
Q ss_pred eCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEE
Q 005240 182 PSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVE 261 (706)
Q Consensus 182 ~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~ 261 (706)
|+|||+.+++..... ...+.+++....+....... +..+.++|+|+. +++..
T Consensus 132 ~s~dg~~~~v~~~~~-----------~~~~~~~~~~~~~~~~~~~~----------------~~~~~~s~~g~~-~~v~~ 183 (373)
T d2madh_ 132 NTPNNADLLFFQFAA-----------GPAVGLVVQGGSSDDQLLSS----------------PTCYHIHPGAPS-TFYLL 183 (373)
T ss_pred EEeCCCcEEEEEEcC-----------CCceEEeeccCCeEEEEecc----------------ceeEEEecCCCc-EEEEE
Confidence 999999988765443 23566777765544332221 225678999986 54332
Q ss_pred eccCCCCccccCccceeeeecCCCCCCCCceEEee-c------ccccccceecCCCceEEEEeeccccceEEEEEcCCCC
Q 005240 262 AQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK-L------DLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK 334 (706)
Q Consensus 262 ~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~-~------~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~ 334 (706)
..+ +.+.+++. ++++...... . ........+++++..++... ...++.++..++
T Consensus 184 ~~d-----------g~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~ 244 (373)
T d2madh_ 184 CAQ-----------GGLAKTDH---AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVY-----SGKILQADISAA 244 (373)
T ss_pred cCC-----------CeEEEEEc---CCceeeEEEeeeccccCccceeeeEEECCCceEEEecC-----CceEEEEEcCCC
Confidence 111 23556666 3444333211 1 11122345566665544321 224566666553
Q ss_pred CCCceee--ecCccc---ccccCCCC-CceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCcee
Q 005240 335 DVAPRVL--FDRVFE---NVYSDPGS-PMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKE 408 (706)
Q Consensus 335 ~~~~~~l--~~~~~~---~~~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~ 408 (706)
. ...+ .+.... .....|+. ....+++||+++++... .+..+... .....+..+|..+++..
T Consensus 245 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~----~~~~~~~~-------~~~~~v~~~d~~t~~~~ 311 (373)
T d2madh_ 245 G--ATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTS----EQSAWKLH-------AAAKEVTSVTGLVGQTS 311 (373)
T ss_pred e--EEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecC----CCceEEee-------cCCCeEEEEECCCCcEE
Confidence 2 2222 111111 11112222 23567899998876642 12222211 11235778898888765
Q ss_pred eeecccchhhhhhhhhhccCCCceecccCCCEEEEEEecCCCCcEEEEEECCCCceeEe
Q 005240 409 RIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQI 467 (706)
Q Consensus 409 ~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~p~~v~~~~~~~~~~~~l 467 (706)
+...... ....+.|||||++++++..+.. ..|++||+++++..+-
T Consensus 312 ~~~~~~~------------~~~~~a~spDG~~~l~vt~~~d--~~v~v~D~~tg~~~~~ 356 (373)
T d2madh_ 312 SQISLGH------------DVDAISVAQDGGPDLYALSAGT--EVLHIYDAGAGDQDQS 356 (373)
T ss_pred EEecCCC------------CeeEEEECCCCCEEEEEEeCCC--CeEEEEECCCCCEEEE
Confidence 5443322 1124789999998776544433 5799999999876443
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.52 E-value=5.7e-12 Score=125.00 Aligned_cols=270 Identities=9% Similarity=0.020 Sum_probs=164.3
Q ss_pred CCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccc
Q 005240 59 SCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMT 138 (706)
Q Consensus 59 ~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (706)
.+...|.++|+++++..+....... +..++|||||++|+....
T Consensus 9 ~~~~~v~v~D~~t~~~~~~i~~g~~-----p~~va~spdG~~l~v~~~-------------------------------- 51 (301)
T d1l0qa2 9 SESDNISVIDVTSNKVTATIPVGSN-----PMGAVISPDGTKVYVANA-------------------------------- 51 (301)
T ss_dssp TTTTEEEEEETTTTEEEEEEECSSS-----EEEEEECTTSSEEEEEEG--------------------------------
T ss_pred CCCCEEEEEECCCCeEEEEEECCCC-----ceEEEEeCCCCEEEEEEC--------------------------------
Confidence 3446799999999976554333322 567899999999876532
Q ss_pred hhccCCchhhhhhhhcccceEEEEcc-CC-CceecCCCceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEec
Q 005240 139 DNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTT 216 (706)
Q Consensus 139 ~~~~~~~~d~~~~~~~~~~~l~~~~l-~g-~~~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~ 216 (706)
....|.++|+ ++ ....+........+.|++||+.+++..... ..+.+++.
T Consensus 52 ----------------~~~~i~v~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~ 103 (301)
T d1l0qa2 52 ----------------HSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMAS------------STLSVIDT 103 (301)
T ss_dssp ----------------GGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTT------------TEEEEEET
T ss_pred ----------------CCCEEEEEECCCCceeeeeecccccccccccccccccccccccc------------ceeeeccc
Confidence 1257889999 55 344444445667899999999998765442 47888998
Q ss_pred CCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEee
Q 005240 217 DGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK 296 (706)
Q Consensus 217 ~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~ 296 (706)
.+++........ .....+.|+|||+. ++.....+ ..+.+++. .+........
T Consensus 104 ~~~~~~~~~~~~-------------~~~~~~~~~~dg~~-~~~~~~~~-----------~~~~~~~~---~~~~~~~~~~ 155 (301)
T d1l0qa2 104 TSNTVAGTVKTG-------------KSPLGLALSPDGKK-LYVTNNGD-----------KTVSVINT---VTKAVINTVS 155 (301)
T ss_dssp TTTEEEEEEECS-------------SSEEEEEECTTSSE-EEEEETTT-----------TEEEEEET---TTTEEEEEEE
T ss_pred ccceeeeecccc-------------ccceEEEeecCCCe-eeeeeccc-----------cceeeeec---cccceeeecc
Confidence 876544433322 11336789999997 54432111 13556665 4444333344
Q ss_pred cccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEeeeccCC
Q 005240 297 LDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKEND 376 (706)
Q Consensus 297 ~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~ 376 (706)
.......+.|+||++.++..... ...++..+.... +.......... ...+.++++|+.+++....
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~--~~~~~~~~~~~-------~~~~~~~~~g~~~~v~~~~--- 220 (301)
T d1l0qa2 156 VGRSPKGIAVTPDGTKVYVANFD---SMSISVIDTVTN--SVIDTVKVEAA-------PSGIAVNPEGTKAYVTNVD--- 220 (301)
T ss_dssp CCSSEEEEEECTTSSEEEEEETT---TTEEEEEETTTT--EEEEEEECSSE-------EEEEEECTTSSEEEEEEEC---
T ss_pred cCCCceEEEeeccccceeeeccc---ccccccccccce--eeeecccccCC-------cceeecccccccccccccc---
Confidence 44556678899999988876422 223445554442 22222111110 0125678999988765421
Q ss_pred cceEEEEecCCCCCCCCCCceeeeecCCCceeeeecccchhhhhhhhhhccCCCceecccCCCEEEEEEecCCCCcEEEE
Q 005240 377 EQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHI 456 (706)
Q Consensus 377 ~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~p~~v~~ 456 (706)
.....++.+|+.+++......... ....++|||||++|+.+.... ..|.+
T Consensus 221 ---------------~~~~~v~v~D~~t~~~~~~~~~~~------------~~~~va~spdg~~l~va~~~~---~~i~v 270 (301)
T d1l0qa2 221 ---------------KYFNTVSMIDTGTNKITARIPVGP------------DPAGIAVTPDGKKVYVALSFC---NTVSV 270 (301)
T ss_dssp ---------------SSCCEEEEEETTTTEEEEEEECCS------------SEEEEEECTTSSEEEEEETTT---TEEEE
T ss_pred ---------------ceeeeeeeeecCCCeEEEEEcCCC------------CEEEEEEeCCCCEEEEEECCC---CeEEE
Confidence 112247778988887654433321 112468999999876554332 36999
Q ss_pred EECCCCceeE
Q 005240 457 LSWPLKKSSQ 466 (706)
Q Consensus 457 ~~~~~~~~~~ 466 (706)
||+++++...
T Consensus 271 ~D~~t~~~~~ 280 (301)
T d1l0qa2 271 IDTATNTITA 280 (301)
T ss_dssp EETTTTEEEE
T ss_pred EECCCCeEEE
Confidence 9999886543
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.51 E-value=5.2e-12 Score=132.92 Aligned_cols=325 Identities=7% Similarity=-0.005 Sum_probs=175.8
Q ss_pred CCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecC
Q 005240 28 PDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPS 107 (706)
Q Consensus 28 ~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~ 107 (706)
|.......+.+++|.+.++++.. .+...|.++|+++++......... .+..+++||||++||....+
T Consensus 16 ~~~~~p~~~~~~~d~~~~~~V~~--------~~dg~v~vwD~~t~~~~~~l~~g~-----~~~~vafSPDGk~l~~~~~d 82 (426)
T d1hzua2 16 KPEDRPKKQLNDLDLPNLFSVTL--------RDAGQIALVDGDSKKIVKVIDTGY-----AVHISRMSASGRYLLVIGRD 82 (426)
T ss_dssp CGGGSCSSCCSCCCGGGEEEEEE--------TTTTEEEEEETTTCSEEEEEECCS-----SEEEEEECTTSCEEEEEETT
T ss_pred CcccCCCcccccCCCCeEEEEEE--------cCCCEEEEEECCCCcEEEEEeCCC-----CeeEEEECCCCCEEEEEeCC
Confidence 33334556788999998888765 345788889999987654432222 26789999999998765321
Q ss_pred CCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCCcee---cCCC----ceEee
Q 005240 108 SRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKD---FGTP----AVYTA 179 (706)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~~~---lt~~----~~~~~ 179 (706)
+.+.++|+ +++... +... +...+
T Consensus 83 -------------------------------------------------~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s 113 (426)
T d1hzua2 83 -------------------------------------------------ARIDMIDLWAKEPTKVAEIKIGIEARSVESS 113 (426)
T ss_dssp -------------------------------------------------SEEEEEETTSSSCEEEEEEECCSEEEEEEEC
T ss_pred -------------------------------------------------CCEEEEEccCCceeEEEEEeCCCCCcceEEe
Confidence 46778888 454332 2222 34457
Q ss_pred eeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCC-CcceeeecCCCceEE
Q 005240 180 VEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREG-MRSISWRADKPSTLY 258 (706)
Q Consensus 180 ~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g-~~~~~~spdg~~~l~ 258 (706)
++|||||++|+...... ..+.+||..+.....+............+. ..+ ...+..++|+.. ++
T Consensus 114 ~~~spDG~~l~v~~~~~------------~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~s~d~~~-~~ 178 (426)
T d1hzua2 114 KFKGYEDRYTIAGAYWP------------PQFAIMDGETLEPKQIVSTRGMTVDTQTYH--PEPRVAAIIASHEHPE-FI 178 (426)
T ss_dssp CSTTCTTTEEEEEEEES------------SEEEEEETTTCCEEEEEECCEECSSSCCEE--SCCCEEEEEECSSSSE-EE
T ss_pred eeecCCCCEEEEeecCC------------CeEEEEcCCccceeEEeeccCCCccceeec--CCCceeEEEECCCCCE-EE
Confidence 88999999998765442 478899998776554433322110000000 011 124566777765 33
Q ss_pred EEEeccCCCCccccCccceeeeecCCCCCCCCceEE--eecccccccceecCCCceEEEEeeccccceEEEEEcCCCCCC
Q 005240 259 WVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEIL--HKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDV 336 (706)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l--~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~ 336 (706)
+. ..+ ...+..++. .......+ .........+.|+|++++++..... ...+..++..+++
T Consensus 179 ~~-~~~----------~~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~---~~~~~~~~~~~~~- 240 (426)
T d1hzua2 179 VN-VKE----------TGKVLLVNY---KDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANN---SNKVAVIDSKDRR- 240 (426)
T ss_dssp EE-ETT----------TTEEEEEEC---SSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETT---CSEEEEEETTTTE-
T ss_pred Ee-cCC----------CCeEEEEEe---ccccceeeEEeccCCccEeeeECCCCcEEEeeeec---ccceeeeeccccc-
Confidence 22 111 123444443 22222222 2345566788999999988765422 1234444444321
Q ss_pred Cceeee------------------------------------cCccc----------ccc--cCCCCCceEeccCCCEEE
Q 005240 337 APRVLF------------------------------------DRVFE----------NVY--SDPGSPMMTRTSTGTNVI 368 (706)
Q Consensus 337 ~~~~l~------------------------------------~~~~~----------~~~--~~~~~~~~~~s~dg~~l~ 368 (706)
...+. +.... ... ...+...+.++|||++|+
T Consensus 241 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~ 319 (426)
T d1hzua2 241 -LSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLY 319 (426)
T ss_dssp -EEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEE
T ss_pred -EEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEE
Confidence 11100 00000 000 011234466777777777
Q ss_pred EeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCce-eeeecccchhhhhhhhhhcc---CCCceecccCCCEEEEE
Q 005240 369 AKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSK-ERIWESNREKYFETAVALVF---GQGEEDINLNQLKILTS 444 (706)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~-~~l~~~~~~~~~~~~~~~~~---~~~~~~~s~Dg~~l~~~ 444 (706)
+..... .++. ....+..+|+++++. .+++.... ...+.. ....+.|||||++++++
T Consensus 320 v~~~~~----------~s~~----~~~tv~vwd~~t~~~~~~~~~~~~------~~~~~~~~~rv~~~~fSpDGk~i~vs 379 (426)
T d1hzua2 320 VDTTFN----------PDAR----ISQSVAVFDLKNLDAKYQVLPIAE------WADLGEGAKRVVQPEYNKRGDEVWFS 379 (426)
T ss_dssp ECCTTC----------SSHH----HHTCEEEEETTCTTSCCEEECHHH------HHCCCSSCCCEEEEEECSSSSEEEEE
T ss_pred EeecCC----------CCcc----cCCEEEEEECCCCCcCeEEeccch------hcccCCCCccEEEEEECCCCCEEEEE
Confidence 643210 0000 012366678877753 23322111 111111 11246899999999876
Q ss_pred Eec-CCCCcEEEEEECCCCceeEee
Q 005240 445 KES-KTEITQYHILSWPLKKSSQIT 468 (706)
Q Consensus 445 ~~~-~~~p~~v~~~~~~~~~~~~lt 468 (706)
... ......|.+||.+++++....
T Consensus 380 ~~~~~~~~~~i~v~D~~T~k~~~~i 404 (426)
T d1hzua2 380 VWNGKNDSSALVVVDDKTLKLKAVV 404 (426)
T ss_dssp ECCCTTSCCEEEEEETTTTEEEEEE
T ss_pred EecCCCCCCeEEEEECCCCeEEEEE
Confidence 543 456677999999998876544
|
| >d1ufoa_ c.69.1.27 (A:) Hypothetical protein TT1662 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hypothetical protein TT1662 domain: Hypothetical protein TT1662 species: Thermus thermophilus [TaxId: 274]
Probab=99.50 E-value=1.2e-13 Score=133.11 Aligned_cols=185 Identities=18% Similarity=0.103 Sum_probs=114.0
Q ss_pred CceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEE
Q 005240 480 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 559 (706)
Q Consensus 480 ~~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~ 559 (706)
++.|.+++. | ++.....|.+ |.|+||++||.+.. ... ....+..|+++||+|+
T Consensus 3 ~~~~~~~l~---g--~~~~~~~p~~-------~~~~vl~lHG~~~~-----------~~~----~~~~~~~la~~G~~V~ 55 (238)
T d1ufoa_ 3 VRTERLTLA---G--LSVLARIPEA-------PKALLLALHGLQGS-----------KEH----ILALLPGYAERGFLLL 55 (238)
T ss_dssp EEEEEEEET---T--EEEEEEEESS-------CCEEEEEECCTTCC-----------HHH----HHHTSTTTGGGTEEEE
T ss_pred EEEEEEEEC---C--EEEEecCCCC-------CCeEEEEeCCCCCC-----------HHH----HHHHHHHHHHCCCEEE
Confidence 345565553 4 4555666643 36999999996311 001 1123456788999999
Q ss_pred EcCCCCcCCC--CCCCC-chhhHH----HHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEe
Q 005240 560 AGPSIPIIGE--GDKLP-NDRFVE----QLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIA 632 (706)
Q Consensus 560 ~~~~~~~~g~--g~~~~-~~~~~~----~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~ 632 (706)
+++.++.... ..... ...+.. ....++..+..++...+.+++.+++++|+|+||++++.++.++|+. +++++
T Consensus 56 ~~D~~g~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~G~S~Gg~~a~~~~~~~p~~-~~~~~ 134 (238)
T d1ufoa_ 56 AFDAPRHGEREGPPPSSKSPRYVEEVYRVALGFKEEARRVAEEAERRFGLPLFLAGGSLGAFVAHLLLAEGFRP-RGVLA 134 (238)
T ss_dssp ECCCTTSTTSSCCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEETHHHHHHHHHHHTTCCC-SCEEE
T ss_pred EecCCCCCCCcccccccccchhhhhhhhhHHhHHHHHHHHhhhccccCCceEEEEEecccHHHHHHHHhcCcch-hheee
Confidence 9777643111 11111 112222 2233333333344444567889999999999999999999999754 44454
Q ss_pred ccCCCC-CCCC----------------------------Ccc------------chHHHHHHHHHhCCC--cEEEEEeCC
Q 005240 633 RSGSYN-KTLT----------------------------PFG------------FQAERFFDALKGHGA--LSRLVLLPF 669 (706)
Q Consensus 633 ~~~~~d-~~~~----------------------------~~~------------~~~~~~~~~l~~~~~--~~~~~~~~~ 669 (706)
..+... .... |.. -+..+++++|++.++ .++++.+||
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~g 214 (238)
T d1ufoa_ 135 FIGSGFPMKLPQGQVVEDPGVLALYQAPPATRGEAYGGVPLLHLHGSRDHIVPLARMEKTLEALRPHYPEGRLARFVEEG 214 (238)
T ss_dssp ESCCSSCCCCCTTCCCCCHHHHHHHHSCGGGCGGGGTTCCEEEEEETTCTTTTHHHHHHHHHHHGGGCTTCCEEEEEETT
T ss_pred eeeeccccccccccccccccccchhhhhhhhhhhhhcCCCeEEEEcCCCCccCHHHHHHHHHHHHhcCCCceEEEEEECC
Confidence 444332 1110 100 022389999998876 478889999
Q ss_pred CCccCCCcccHHHHHHHHHHHHHHHhcc
Q 005240 670 EHHVYAARENVMHVIWETDRWLQKYCLS 697 (706)
Q Consensus 670 ~~H~~~~~~~~~~~~~~~~~f~~~~l~~ 697 (706)
++|.++. +.++.+.+||++||..
T Consensus 215 ~gH~~~~-----~~~~~~~~f~~~~l~~ 237 (238)
T d1ufoa_ 215 AGHTLTP-----LMARVGLAFLEHWLEA 237 (238)
T ss_dssp CCSSCCH-----HHHHHHHHHHHHHHHC
T ss_pred CCCccCH-----HHHHHHHHHHHHHhcC
Confidence 9998762 4678899999999853
|
| >d3b5ea1 c.69.1.14 (A:7-215) Uncharacterized protein Mll8374 {Mesorhizobium loti [TaxId: 381]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Uncharacterized protein Mll8374 species: Mesorhizobium loti [TaxId: 381]
Probab=99.48 E-value=7.2e-13 Score=124.67 Aligned_cols=108 Identities=17% Similarity=0.108 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCCCCCC--------Cc------
Q 005240 579 VEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLT--------PF------ 644 (706)
Q Consensus 579 ~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d~~~~--------~~------ 644 (706)
......++...++.+.++..+|++||+|+|+|+||++++.++.++|++|+++++++|....... |.
T Consensus 81 ~~~~~~~l~~~l~~~~~~~~id~~ri~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~g~~~~~~~~~~~~~~~p~~~~~G~ 160 (209)
T d3b5ea1 81 ILAETAAFAAFTNEAAKRHGLNLDHATFLGYSNGANLVSSLMLLHPGIVRLAALLRPMPVLDHVPATDLAGIRTLIIAGA 160 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCGGGEEEEEETHHHHHHHHHHHHSTTSCSEEEEESCCCCCSSCCCCCCTTCEEEEEEET
T ss_pred HHHHHHHHHHHHHHHHHHhCcccCCEEEEeeCChHHHHHHHHHhCCCcceEEEEeCCccccccccccccccchheeeecc
Confidence 3445667777788888877799999999999999999999999999999999999997543221 11
Q ss_pred -----cchHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHH
Q 005240 645 -----GFQAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQ 692 (706)
Q Consensus 645 -----~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~~ 692 (706)
.-...++.+.|++.|.++++.+||+ +|.+.. +..+.+.+||.
T Consensus 161 ~D~~~~~~~~~~~~~l~~~G~~v~~~~~~g-gH~i~~-----~~~~~~~~wl~ 207 (209)
T d3b5ea1 161 ADETYGPFVPALVTLLSRHGAEVDARIIPS-GHDIGD-----PDAAIVRQWLA 207 (209)
T ss_dssp TCTTTGGGHHHHHHHHHHTTCEEEEEEESC-CSCCCH-----HHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHCCCCeEEEEECC-CCCCCH-----HHHHHHHHHhC
Confidence 0123588999999999999999998 799862 34566778874
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.48 E-value=2.6e-12 Score=131.18 Aligned_cols=313 Identities=13% Similarity=0.106 Sum_probs=172.3
Q ss_pred eeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCCC
Q 005240 37 SWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKT 116 (706)
Q Consensus 37 ~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~ 116 (706)
+.||||++++.. +. .......+||++|+++++......... ...++|||||++||+........
T Consensus 8 a~spdg~~~~v~-~~----~~~~~~~~v~v~D~~tg~~~~~~~~g~------~~~~a~SpDg~~l~v~~~~~~~~----- 71 (355)
T d2bbkh_ 8 APAPDARRVYVN-DP----AHFAAVTQQFVIDGEAGRVIGMIDGGF------LPNPVVADDGSFIAHASTVFSRI----- 71 (355)
T ss_dssp CCCCCTTEEEEE-EC----GGGCSSEEEEEEETTTTEEEEEEEECS------SCEEEECTTSSCEEEEEEEEEET-----
T ss_pred eeCCCCCEEEEE-ec----ccCCCcCeEEEEECCCCcEEEEEECCC------CCceEEcCCCCEEEEEeCCCccc-----
Confidence 458999999544 31 111345789999999987655432221 34689999999988764210000
Q ss_pred CCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCCcee-cCCC--------ceEeeeeeCCCC
Q 005240 117 MVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKD-FGTP--------AVYTAVEPSPDQ 186 (706)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~~~-lt~~--------~~~~~~~~SpDG 186 (706)
......+.|.++|+ +++... +... .....+.|||||
T Consensus 72 ----------------------------------~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg 117 (355)
T d2bbkh_ 72 ----------------------------------ARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDG 117 (355)
T ss_dssp ----------------------------------TEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTS
T ss_pred ----------------------------------cccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCC
Confidence 00002357888898 554332 2111 233467899999
Q ss_pred cEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCC-CCCCcccCccCCCCcceeeecCCCceEEEEEeccC
Q 005240 187 KYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPA-EDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDR 265 (706)
Q Consensus 187 ~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~-~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~ 265 (706)
+++++..... ...+.+++..+++.......... ...+. .....+.+++||+. +++.. ...
T Consensus 118 ~~~~v~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~dg~~-~~v~~-~~~ 178 (355)
T d2bbkh_ 118 KTLLFYQFSP-----------APAVGVVDLEGKAFKRMLDVPDCYHIFPT------APDTFFMHCRDGSL-AKVAF-GTE 178 (355)
T ss_dssp SEEEEEECSS-----------SCEEEEEETTTTEEEEEEECCSEEEEEEE------ETTEEEEEETTSCE-EEEEC-CSS
T ss_pred CeeEEecCCC-----------CceeeeeecCCCcEeeEEecCCcceEeec------CCcceEEEcCCCCE-EEEEe-cCC
Confidence 9998765443 24678888887655443322211 00010 11235688899886 54332 111
Q ss_pred CCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceee--ec
Q 005240 266 GDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVL--FD 343 (706)
Q Consensus 266 ~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l--~~ 343 (706)
. .+...+. ..... .....+..+.+++++..+++.+ ....++++++.+++ ...+ .+
T Consensus 179 ~----------~~~~~~~---~~~~~----~~~~~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~~~--~~~~~~~~ 235 (355)
T d2bbkh_ 179 G----------TPEITHT---EVFHP----EDEFLINHPAYSQKAGRLVWPT----YTGKIHQIDLSSGD--AKFLPAVE 235 (355)
T ss_dssp S----------CCEEEEC---CCCSC----TTSCBCSCCEEETTTTEEEEEB----TTSEEEEEECTTSS--CEECCCEE
T ss_pred C----------eEEEEec---ccccc----eecceeeeccccCCCCeEEEec----CCCeEEEEecCCCc--EEEEeccC
Confidence 1 1112222 11100 1122344567888888888764 22358888888753 3322 11
Q ss_pred Ccc---cccccCC-CCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeeecccchhhh
Q 005240 344 RVF---ENVYSDP-GSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYF 419 (706)
Q Consensus 344 ~~~---~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~ 419 (706)
... ......| +...+.+++||+.+++..... . ..........|..+|+.+++..+.+..+..
T Consensus 236 ~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~---~--------~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~--- 301 (355)
T d2bbkh_ 236 ALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQR---D--------EWRHKTASRFVVVLDAKTGERLAKFEMGHE--- 301 (355)
T ss_dssp SSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEEC---C--------TTCTTSCEEEEEEEETTTCCEEEEEEEEEE---
T ss_pred CcccceEeeeeeccceEEEEEeCCCCeEEEEeccC---C--------ceeecCCCCeEEEEeCCCCcEEEEecCCCC---
Confidence 111 0111122 223477889999888765321 0 000111223577889988876554433221
Q ss_pred hhhhhhccCCCceecccCCCEEEEEEecCCCCcEEEEEECCCCceeE
Q 005240 420 ETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQ 466 (706)
Q Consensus 420 ~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~p~~v~~~~~~~~~~~~ 466 (706)
+ ..+.|||||+.++++.... ...|++||+++++..+
T Consensus 302 --~-------~~~a~spDG~~~l~v~~~~--d~~i~v~D~~tg~~~~ 337 (355)
T d2bbkh_ 302 --I-------DSINVSQDEKPLLYALSTG--DKTLYIHDAESGEELR 337 (355)
T ss_dssp --E-------CEEEECCSSSCEEEEEETT--TTEEEEEETTTCCEEE
T ss_pred --E-------EEEEEcCCCCeEEEEEECC--CCEEEEEECCCCCEEE
Confidence 1 2468999999777765443 3679999999987644
|
| >d2pbla1 c.69.1.2 (A:1-261) Uncharacterized protein TM1040_2492 {Silicibacter sp. tm1040 [TaxId: 292414]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Uncharacterized protein TM1040 2492 species: Silicibacter sp. tm1040 [TaxId: 292414]
Probab=99.48 E-value=2.9e-13 Score=131.57 Aligned_cols=114 Identities=17% Similarity=0.191 Sum_probs=85.9
Q ss_pred EEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCCCCchh
Q 005240 498 TLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDR 577 (706)
Q Consensus 498 ~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~~ 577 (706)
-||.|++ .+.|+||++|||++..++. ..+ ...++.|+++||+|+.+++|...+ .
T Consensus 53 Diy~P~~------~~~P~vv~iHGG~w~~g~~--------~~~----~~~a~~l~~~G~~Vv~~~YRl~p~--------~ 106 (261)
T d2pbla1 53 DLFLPEG------TPVGLFVFVHGGYWMAFDK--------SSW----SHLAVGALSKGWAVAMPSYELCPE--------V 106 (261)
T ss_dssp EEECCSS------SCSEEEEEECCSTTTSCCG--------GGC----GGGGHHHHHTTEEEEEECCCCTTT--------S
T ss_pred EEeccCC------CCCCeEEEECCCCCccCCh--------hHh----hhHHHHHhcCCceeeccccccccc--------c
Confidence 4788864 1479999999997643211 111 235678899999999999974322 1
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCC------CceeEEEeccCCCCCC
Q 005240 578 FVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAP------HLFCCGIARSGSYNKT 640 (706)
Q Consensus 578 ~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p------~~~~a~v~~~~~~d~~ 640 (706)
.....++|+.++++|+.++. ++||+|+|+|+||+||++++.... ..++++++++|+++..
T Consensus 107 ~~p~~~~d~~~a~~~~~~~~---~~rI~l~G~SaGG~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (261)
T d2pbla1 107 RISEITQQISQAVTAAAKEI---DGPIVLAGHSAGGHLVARMLDPEVLPEAVGARIRNVVPISPLSDLR 172 (261)
T ss_dssp CHHHHHHHHHHHHHHHHHHS---CSCEEEEEETHHHHHHHHTTCTTTSCHHHHTTEEEEEEESCCCCCG
T ss_pred cCchhHHHHHHHHHHHHhcc---cCceEEEEcchHHHHHHHHhcCcccccchhhchhhhhccccccccc
Confidence 24567899999999999874 589999999999999998876542 3588999999988754
|
| >d1thta_ c.69.1.13 (A:) Myristoyl-ACP-specific thioesterase {Vibrio harveyi [TaxId: 669]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterases domain: Myristoyl-ACP-specific thioesterase species: Vibrio harveyi [TaxId: 669]
Probab=99.48 E-value=9.1e-13 Score=131.52 Aligned_cols=132 Identities=11% Similarity=-0.027 Sum_probs=94.5
Q ss_pred EEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCC
Q 005240 484 MIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPS 563 (706)
Q Consensus 484 ~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~ 563 (706)
.-.++..||..|++|.+.|++-.+. +.|+||++||... .......++..|+++||.|+..+.
T Consensus 6 ~h~~~~~dg~~l~~w~~~p~~~~~~---~~~~Vvi~HG~~~---------------~~~~~~~~a~~L~~~G~~Vi~~D~ 67 (302)
T d1thta_ 6 AHVLRVNNGQELHVWETPPKENVPF---KNNTILIASGFAR---------------RMDHFAGLAEYLSTNGFHVFRYDS 67 (302)
T ss_dssp EEEEEETTTEEEEEEEECCCTTSCC---CSCEEEEECTTCG---------------GGGGGHHHHHHHHTTTCCEEEECC
T ss_pred eeEEEcCCCCEEEEEEecCcCCCCC---CCCEEEEeCCCcc---------------hHHHHHHHHHHHHHCCCEEEEecC
Confidence 3445678999999999999873332 3689999999531 111223567889999999999888
Q ss_pred CCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCC
Q 005240 564 IPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYN 638 (706)
Q Consensus 564 ~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d 638 (706)
+|..|................|+.++++|+.++ +.++|+|+|+||||.+++.++.. ..++++|+.+|+.+
T Consensus 68 rGh~G~S~g~~~~~~~~~~~~dl~~vi~~l~~~---~~~~i~lvG~SmGG~ial~~A~~--~~v~~li~~~g~~~ 137 (302)
T d1thta_ 68 LHHVGLSSGSIDEFTMTTGKNSLCTVYHWLQTK---GTQNIGLIAASLSARVAYEVISD--LELSFLITAVGVVN 137 (302)
T ss_dssp CBCC--------CCCHHHHHHHHHHHHHHHHHT---TCCCEEEEEETHHHHHHHHHTTT--SCCSEEEEESCCSC
T ss_pred CCCCCCCCCcccCCCHHHHHHHHHHHHHhhhcc---CCceeEEEEEchHHHHHHHHhcc--cccceeEeeccccc
Confidence 765444332222333456788999999999876 35789999999999999887764 45889999998864
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.47 E-value=4.6e-12 Score=127.79 Aligned_cols=289 Identities=12% Similarity=0.062 Sum_probs=152.7
Q ss_pred ccceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCc
Q 005240 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (706)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~ 83 (706)
..+|+|.+++.. +..+.++.+..+..+..++|||||++|+.+... ++.-.+|.++..+...+.+.....
T Consensus 13 ~~~I~v~~~~~~---~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~-------d~~i~~~~i~~~~~~~~~~~~~~~- 81 (333)
T d1ri6a_ 13 SQQIHVWNLNHE---GALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRP-------EFRVLAYRIAPDDGALTFAAESAL- 81 (333)
T ss_dssp GTEEEEEEECTT---SCEEEEEEEECSSCCCCEEECTTSSEEEEEETT-------TTEEEEEEECTTTCCEEEEEEEEC-
T ss_pred CCcEEEEEEcCC---CCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECC-------CCeEEEEEEeCCCCcEEEeeeccc-
Confidence 356899999762 344545434455568899999999999654321 334455555545555444432111
Q ss_pred cccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEc
Q 005240 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (706)
Q Consensus 84 ~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~ 163 (706)
...+..++|||||++|++.... ...+..++
T Consensus 82 --~~~p~~l~~spDg~~l~v~~~~------------------------------------------------~~~v~~~~ 111 (333)
T d1ri6a_ 82 --PGSLTHISTDHQGQFVFVGSYN------------------------------------------------AGNVSVTR 111 (333)
T ss_dssp --SSCCSEEEECTTSSEEEEEETT------------------------------------------------TTEEEEEE
T ss_pred --CCCceEEEEcCCCCEEeecccC------------------------------------------------CCceeeec
Confidence 1124578999999998876421 12344344
Q ss_pred c-CCC---ceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccC
Q 005240 164 L-DGT---AKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYN 238 (706)
Q Consensus 164 l-~g~---~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~ 238 (706)
. ... ....... .....+.+||||++++...... ..+.+|+................ .+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~------------~~i~~~~~~~~~~~~~~~~~~~~-~~---- 174 (333)
T d1ri6a_ 112 LEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQ------------DRICLFTVSDDGHLVAQDPAEVT-TV---- 174 (333)
T ss_dssp EETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGG------------TEEEEEEECTTSCEEEEEEEEEE-CS----
T ss_pred cccccceecccccCCCccceEEEeeecceeeecccccc------------ceeeEEEeccCCcceeeeceeee-ee----
Confidence 3 221 1111122 4566888999999998776543 36777777633211110000000 00
Q ss_pred ccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceE---Eee------cccccccceecCC
Q 005240 239 SVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEI---LHK------LDLRFRSVSWCDD 309 (706)
Q Consensus 239 ~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~---l~~------~~~~~~~~~wspD 309 (706)
....++.+.|++++.. ++... ..... ..++.++. ....... +.. .......+.+++|
T Consensus 175 -~g~~p~~i~~~~~~~~-~~~~~-~~~~~--------~~v~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d 240 (333)
T d1ri6a_ 175 -EGAGPRHMVFHPNEQY-AYCVN-ELNSS--------VDVWELKD---PHGNIECVQTLDMMPENFSDTRWAADIHITPD 240 (333)
T ss_dssp -TTCCEEEEEECTTSSE-EEEEE-TTTTE--------EEEEESSC---TTSCCEEEEEEECSCTTCCSCCCEEEEEECTT
T ss_pred -cCCCccEEEEecccee-EEeec-cccCc--------eEEEeecc---cccceeeeeeeeeeecCCCccccceeEEEecc
Confidence 0022457889999986 54332 21111 11333222 2222221 111 1122345679999
Q ss_pred CceEEEEeeccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCC
Q 005240 310 SLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFT 389 (706)
Q Consensus 310 g~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~ 389 (706)
++.++... .......+|.++.++.. .......... .. ...++|||||++|++....
T Consensus 241 ~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~---~~--p~~~a~spDGk~l~va~~~---------------- 296 (333)
T d1ri6a_ 241 GRHLYACD-RTASLITVFSVSEDGSV--LSKEGFQPTE---TQ--PRGFNVDHSGKYLIAAGQK---------------- 296 (333)
T ss_dssp SSEEEEEE-TTTTEEEEEEECTTSCC--EEEEEEEECS---SS--CCCEEECTTSSEEEEECTT----------------
T ss_pred cCceeeec-ccCCeEEEEEEcCCCCE--EEEEEEeCCC---CC--eeEEEEeCCCCEEEEEECC----------------
Confidence 99877654 33345667777766532 2221111110 01 1237889999998765321
Q ss_pred CCCCCCceeeeecCCCceeee
Q 005240 390 PEGNIPFLDLFDINTGSKERI 410 (706)
Q Consensus 390 ~~~~~~~l~~~d~~~g~~~~l 410 (706)
.+...+|.+|.++|+.+++
T Consensus 297 --~~~v~v~~id~~tG~l~~~ 315 (333)
T d1ri6a_ 297 --SHHISVYEIVGEQGLLHEK 315 (333)
T ss_dssp --TCEEEEEEEETTTTEEEEE
T ss_pred --CCeEEEEEEECCCCcEEEE
Confidence 2233577789889987655
|
| >d1lnsa3 c.69.1.21 (A:146-550) X-Prolyl dipeptidyl aminopeptidase PepX, middle domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: X-Prolyl dipeptidyl aminopeptidase PepX, middle domain species: Lactococcus lactis [TaxId: 1358]
Probab=99.44 E-value=1.3e-12 Score=136.06 Aligned_cols=93 Identities=18% Similarity=0.077 Sum_probs=72.2
Q ss_pred chHHHHHHHCCeEEEEcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCC--------------CcEEEEEec
Q 005240 545 PTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADP--------------SRIAVGGHS 610 (706)
Q Consensus 545 ~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~id~--------------~~i~i~G~S 610 (706)
....+.|+.+||+|+..+.||..+.+-.+ ..+.....+|..++|+|+.++..+++ .|||++|.|
T Consensus 126 ~~~~~~~~~~GYavv~~D~RG~g~S~G~~--~~~~~~e~~D~~~~IeWl~~~~~~~~~~~~~~~~~q~WsnGkVGm~G~S 203 (405)
T d1lnsa3 126 YSLNDYFLTRGFASIYVAGVGTRSSDGFQ--TSGDYQQIYSMTAVIDWLNGRARAYTSRKKTHEIKASWANGKVAMTGKS 203 (405)
T ss_dssp CHHHHHHHTTTCEEEEECCTTSTTSCSCC--CTTSHHHHHHHHHHHHHHTTSSCEESSTTCCCEECCTTEEEEEEEEEET
T ss_pred ccchHHHHhCCCEEEEECCCCCCCCCCcc--ccCChhhhhhHHHHHHHHHhcccccccccccccccccccCCeeEEEecC
Confidence 34568899999999997777653332222 23344578899999999987543322 489999999
Q ss_pred hHHHHHHHHHHhCCCceeEEEeccCCCCC
Q 005240 611 YGAFMTAHLLAHAPHLFCCGIARSGSYNK 639 (706)
Q Consensus 611 ~GG~~a~~~~~~~p~~~~a~v~~~~~~d~ 639 (706)
|||++++++|+..|..++|+|..+++.|+
T Consensus 204 Y~G~~q~~aA~~~pp~LkAivp~~~~~d~ 232 (405)
T d1lnsa3 204 YLGTMAYGAATTGVEGLELILAEAGISSW 232 (405)
T ss_dssp HHHHHHHHHHTTTCTTEEEEEEESCCSBH
T ss_pred HHHHHHHHHHhcCCccceEEEecCccccH
Confidence 99999999999999999999999988763
|
| >d1pv1a_ c.69.1.34 (A:) Hypothetical esterase YJL068C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hypothetical esterase YJL068C domain: Hypothetical esterase YJL068C species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.44 E-value=1.6e-12 Score=128.18 Aligned_cols=202 Identities=13% Similarity=0.163 Sum_probs=128.1
Q ss_pred CceEEEEEEcc-CCeEEEEEEEecCCCCCC---CCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCC
Q 005240 480 LQKEMIKYQRK-DGVPLTATLYLPPGYDQS---KDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARR 555 (706)
Q Consensus 480 ~~~~~~~~~~~-dg~~i~~~l~~P~~~~~~---~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 555 (706)
.+.+.+++.+. -|.++...+|+|+++... ++++||+|+++||.+-. ...|.... .......+.|
T Consensus 12 G~~~~~s~~S~~l~~~~~~~VyLP~~y~~~~~~~~~~yPVLYlLhG~~~~--------~~~w~~~~----~~~~~~~~~~ 79 (299)
T d1pv1a_ 12 GRLIKLSHNSNSTKTSMNVNIYLPKHYYAQDFPRNKRIPTVFYLSGLTCT--------PDNASEKA----FWQFQADKYG 79 (299)
T ss_dssp EEEEEEEEECSSSSSEEEEEEEECTTTTSCCCSSCTTBCEEEEECCTTCC--------HHHHHHHS----CHHHHHHHHT
T ss_pred cEEEEEEEECcccCCceEEEEEeCCcccccCcccCCCCCEEEEcCCCCCC--------HHHHHHhh----hHHHHHHHcC
Confidence 45667777775 678999999999998432 34569999999995310 01111110 1223444689
Q ss_pred eEEEEcCCCCc-------------CCCCCCCCch----------hhHHHHHHHHHHHHHHHHHc----CCCCCCcEEEEE
Q 005240 556 FAVLAGPSIPI-------------IGEGDKLPND----------RFVEQLVSSAEAAVEEVVRR----GVADPSRIAVGG 608 (706)
Q Consensus 556 ~~v~~~~~~~~-------------~g~g~~~~~~----------~~~~~~~~D~~~~~~~l~~~----~~id~~~i~i~G 608 (706)
++|+++...+. .|.+..+... .+..-+.+++...|+..... ...++++.+|+|
T Consensus 80 ~~vv~~~~~p~~~~~~~~~~~~~~~g~~~~~y~d~~~~p~~~~~~~~~~i~~EL~p~i~~~~~~~~~r~~~~~~~~~I~G 159 (299)
T d1pv1a_ 80 FAIVFPDTSPRGDEVANDPEGSWDFGQGAGFYLNATQEPYAQHYQMYDYIHKELPQTLDSHFNKNGDVKLDFLDNVAITG 159 (299)
T ss_dssp CEEEECCSSCCSTTSCCCTTCCSSSSSSCCTTCBCCSHHHHTTCBHHHHHHTHHHHHHHHHHCC-----BCSSSSEEEEE
T ss_pred CceecCCCcccccccCCcccccccccCCCccccccccCCcccccchHHHHHHHHHHHHHHhCCcccccccccccceEEEe
Confidence 99987432110 1112222211 12233445555554433211 113446899999
Q ss_pred echHHHHHHHHHHhC--CCceeEEEeccCCCCCCCCCc------------------------------------------
Q 005240 609 HSYGAFMTAHLLAHA--PHLFCCGIARSGSYNKTLTPF------------------------------------------ 644 (706)
Q Consensus 609 ~S~GG~~a~~~~~~~--p~~~~a~v~~~~~~d~~~~~~------------------------------------------ 644 (706)
+||||+.|+.++.++ |++|.++++.+|..+....+.
T Consensus 160 ~SmGG~gAl~~al~~~~p~~f~~~~s~s~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~G~ 239 (299)
T d1pv1a_ 160 HSMGGYGAICGYLKGYSGKRYKSCSAFAPIVNPSNVPWGQKAFKGYLGEEKAQWEAYDPCLLIKNIRHVGDDRILIHVGD 239 (299)
T ss_dssp ETHHHHHHHHHHHHTGGGTCCSEEEEESCCCCSTTSHHHHHHHHHHSCC----CGGGCHHHHGGGSCCCTTCCEEEECCT
T ss_pred ecccHHHHHHHHHHhcCCCceEEEeeccCcCCcccccchhhhhhhhcccchhhhhhcCHHHHHHHhhccCCcceeEecCC
Confidence 999999999999864 899999999999876432100
Q ss_pred -------cchHHHHHHHHHhCCCc--EEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHhc
Q 005240 645 -------GFQAERFFDALKGHGAL--SRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCL 696 (706)
Q Consensus 645 -------~~~~~~~~~~l~~~~~~--~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~~~~l~ 696 (706)
....+.|.++|+.++.+ +++...||.+|.+. -+.....+.++|+.++|.
T Consensus 240 ~D~~~~~~~~~~~f~~~~~~~g~~~~~~~~~~~G~~Hsw~---yW~~~i~~~l~f~a~~lg 297 (299)
T d1pv1a_ 240 SDPFLEEHLKPELLLEAVKATSWQDYVEIKKVHGFDHSYY---FVSTFVPEHAEFHARNLG 297 (299)
T ss_dssp TCTTTTTTCCTHHHHHHHTTSTTTTSEEEECCTTCCSSHH---HHHHHHHHHHHHHHHHTT
T ss_pred CCcchhhhhcHHHHHHHHHhcCCCcceEEEecCCCCcCHH---HHHHHHHHHHHHHHHhcC
Confidence 00123788899988865 77888899889864 255677788899999885
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.43 E-value=9.2e-12 Score=126.00 Aligned_cols=295 Identities=11% Similarity=-0.013 Sum_probs=157.8
Q ss_pred ceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCCCC
Q 005240 35 FVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPK 114 (706)
Q Consensus 35 ~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~ 114 (706)
.|++||+|++|+... ...+|.++|+++++.......+.. ..+..+.|||||++|++...
T Consensus 1 g~a~~~~~~~l~~~~----------~~~~v~v~D~~t~~~~~t~~~~~~---~~p~~l~~spDG~~l~v~~~-------- 59 (346)
T d1jmxb_ 1 GPALKAGHEYMIVTN----------YPNNLHVVDVASDTVYKSCVMPDK---FGPGTAMMAPDNRTAYVLNN-------- 59 (346)
T ss_dssp CCCCCTTCEEEEEEE----------TTTEEEEEETTTTEEEEEEECSSC---CSSCEEEECTTSSEEEEEET--------
T ss_pred CccCCCCCcEEEEEc----------CCCEEEEEECCCCCEEEEEEcCCC---CCcceEEECCCCCEEEEEEC--------
Confidence 378999999998864 236899999999987553222211 12568999999998876532
Q ss_pred CCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCCc-eecCCC-------ceEeeeeeCCC
Q 005240 115 KTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTA-KDFGTP-------AVYTAVEPSPD 185 (706)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~-~~lt~~-------~~~~~~~~SpD 185 (706)
..+.|+++|+ +++. ..+... .....+++|||
T Consensus 60 ----------------------------------------~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~D 99 (346)
T d1jmxb_ 60 ----------------------------------------HYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPD 99 (346)
T ss_dssp ----------------------------------------TTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTT
T ss_pred ----------------------------------------CCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecC
Confidence 1157888888 5532 222211 13457889999
Q ss_pred CcEEEEEeeccCcccccccccccceEEEEecCCCeeE-EcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEecc
Q 005240 186 QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR-ELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQD 264 (706)
Q Consensus 186 G~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~ 264 (706)
|+++++.......... ........+.+++..+++.. .+..... +.+...+.+++|++ ++.. .
T Consensus 100 G~~l~v~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~--~~~~-~-- 162 (346)
T d1jmxb_ 100 GKEVYATVNPTQRLND-HYVVKPPRLEVFSTADGLEAKPVRTFPM-----------PRQVYLMRAADDGS--LYVA-G-- 162 (346)
T ss_dssp SSEEEEEEEEEEECSS-CEEECCCEEEEEEGGGGGGBCCSEEEEC-----------CSSCCCEEECTTSC--EEEE-S--
T ss_pred CCEEEEEecCCcceee-eeccCcceEEEEecccceeeeEEEeeec-----------cCceEEEEecCCCE--EEEe-C--
Confidence 9999876654321100 00011245667776643321 1111110 01222445666665 3322 1
Q ss_pred CCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeecc----------------------cc
Q 005240 265 RGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYK----------------------TS 322 (706)
Q Consensus 265 ~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~----------------------~~ 322 (706)
..+.++++ .+++...............++|++..++...... ..
T Consensus 163 -----------~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (346)
T d1jmxb_ 163 -----------PDIYKMDV---KTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADL 228 (346)
T ss_dssp -----------SSEEEECT---TTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEE
T ss_pred -----------CcceEEEc---cCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccC
Confidence 12445555 4444433333344456667788776554322111 11
Q ss_pred ceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeec
Q 005240 323 QTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDI 402 (706)
Q Consensus 323 ~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~ 402 (706)
...+..+++.++......+.. . ........+++++.++++.... .+..+|+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~~~~~~~~~----------------------~v~v~d~ 279 (346)
T d1jmxb_ 229 LYGYLSVDLKTGKTHTQEFAD-L------TELYFTGLRSPKDPNQIYGVLN----------------------RLAKYDL 279 (346)
T ss_dssp EEEEEEEETTTCCEEEEEEEE-C------SSCEEEEEECSSCTTEEEEEES----------------------EEEEEET
T ss_pred CceEEEEECCCCceEEEEeec-c------cceeEEEEEeCCCCEEEEecCC----------------------eEEEEEC
Confidence 223455555543211111100 0 0011224456777766554311 3566788
Q ss_pred CCCceeeeecccchhhhhhhhhhccCCCceecccCCCEEEEEEecCCCCcEEEEEECCCCceeE
Q 005240 403 NTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQ 466 (706)
Q Consensus 403 ~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~p~~v~~~~~~~~~~~~ 466 (706)
++++..+...... ....++|||||++|+....+ ..|.+||+++++...
T Consensus 280 ~~~~~~~~~~~~~------------~~~~va~s~DG~~l~v~~~d----~~v~v~D~~t~~~i~ 327 (346)
T d1jmxb_ 280 KQRKLIKAANLDH------------TYYCVAFDKKGDKLYLGGTF----NDLAVFNPDTLEKVK 327 (346)
T ss_dssp TTTEEEEEEECSS------------CCCEEEECSSSSCEEEESBS----SEEEEEETTTTEEEE
T ss_pred CCCcEEEEEcCCC------------CEEEEEEcCCCCEEEEEeCC----CcEEEEECccCCEEE
Confidence 8887554443221 12357999999877754332 469999998876554
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.42 E-value=6.9e-11 Score=118.91 Aligned_cols=229 Identities=10% Similarity=0.047 Sum_probs=114.3
Q ss_pred ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCC
Q 005240 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (706)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~ 254 (706)
.....++|||||++|++..... ..+.+++.+.............. ..+..+.++||++
T Consensus 83 ~~p~~l~~spDg~~l~v~~~~~------------~~v~~~~~~~~~~~~~~~~~~~~----------~~~~~v~~s~d~~ 140 (333)
T d1ri6a_ 83 GSLTHISTDHQGQFVFVGSYNA------------GNVSVTRLEDGLPVGVVDVVEGL----------DGCHSANISPDNR 140 (333)
T ss_dssp SCCSEEEECTTSSEEEEEETTT------------TEEEEEEEETTEEEEEEEEECCC----------TTBCCCEECTTSS
T ss_pred CCceEEEEcCCCCEEeecccCC------------CceeeeccccccceecccccCCC----------ccceEEEeeecce
Confidence 3456799999999998765432 36777776655443332221111 1233668999998
Q ss_pred ceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEe------ecccccccceecCCCceEEEEeeccccceEEEE
Q 005240 255 STLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH------KLDLRFRSVSWCDDSLALVNETWYKTSQTRTWL 328 (706)
Q Consensus 255 ~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~------~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~ 328 (706)
. ++..... ...+.+++.. ......... ........+.|++++..++... .......++.
T Consensus 141 ~-~~~~~~~-----------~~~i~~~~~~--~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~-~~~~~~~v~~ 205 (333)
T d1ri6a_ 141 T-LWVPALK-----------QDRICLFTVS--DDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVN-ELNSSVDVWE 205 (333)
T ss_dssp E-EEEEEGG-----------GTEEEEEEEC--TTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEE-TTTTEEEEEE
T ss_pred e-eeccccc-----------cceeeEEEec--cCCcceeeeceeeeeecCCCccEEEEeccceeEEeec-cccCceEEEe
Confidence 7 5544211 1134455541 111111111 1122335678999998877654 3334445666
Q ss_pred EcCCCCCCCceee--ecCcccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCc
Q 005240 329 VCPGSKDVAPRVL--FDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGS 406 (706)
Q Consensus 329 ~d~~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~ 406 (706)
++..... .... ..................+++||++++..... .+...++.++..++.
T Consensus 206 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~------------------~~~~~~~~~~~~~~~ 265 (333)
T d1ri6a_ 206 LKDPHGN--IECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRT------------------ASLITVFSVSEDGSV 265 (333)
T ss_dssp SSCTTSC--CEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETT------------------TTEEEEEEECTTSCC
T ss_pred ecccccc--eeeeeeeeeeecCCCccccceeEEEecccCceeeeccc------------------CCeEEEEEEcCCCCE
Confidence 6555422 2211 10000000001111235679999988776522 111123344433332
Q ss_pred eeeeecccchhhhhhhhhhccCCCceecccCCCEEEEEEecCCCCcEEEEEECCCCceeEeecCC
Q 005240 407 KERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFP 471 (706)
Q Consensus 407 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~p~~v~~~~~~~~~~~~lt~~~ 471 (706)
.+........ .....++|||||++|+.+ .....-=.+|.+|.++|+.+++..++
T Consensus 266 ~~~~~~~~~~----------~~p~~~a~spDGk~l~va-~~~~~~v~v~~id~~tG~l~~~~~~~ 319 (333)
T d1ri6a_ 266 LSKEGFQPTE----------TQPRGFNVDHSGKYLIAA-GQKSHHISVYEIVGEQGLLHEKGRYA 319 (333)
T ss_dssp EEEEEEEECS----------SSCCCEEECTTSSEEEEE-CTTTCEEEEEEEETTTTEEEEEEEEE
T ss_pred EEEEEEeCCC----------CCeeEEEEeCCCCEEEEE-ECCCCeEEEEEEECCCCcEEEEEecc
Confidence 2211111100 111346899999987654 33333334667788889888776553
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.42 E-value=1.7e-10 Score=121.10 Aligned_cols=208 Identities=7% Similarity=-0.056 Sum_probs=127.3
Q ss_pred ccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCC
Q 005240 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDP 112 (706)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~ 112 (706)
...+.+..|.+.+.++.. .....|.++|+++++.......... +..++|||||++||..+.+
T Consensus 21 ~~~~~~~~~~~~~~~v~~--------~d~g~v~v~D~~t~~v~~~~~~g~~-----~~~v~fSpDG~~l~~~s~d----- 82 (432)
T d1qksa2 21 PTQQMNDWDLENLFSVTL--------RDAGQIALIDGSTYEIKTVLDTGYA-----VHISRLSASGRYLFVIGRD----- 82 (432)
T ss_dssp CSSCCSCCCGGGEEEEEE--------TTTTEEEEEETTTCCEEEEEECSSC-----EEEEEECTTSCEEEEEETT-----
T ss_pred CCceeecCCCCcEEEEEE--------cCCCEEEEEECCCCcEEEEEeCCCC-----eeEEEECCCCCEEEEEcCC-----
Confidence 334556677777766654 4457899999999887665433322 6788999999999875421
Q ss_pred CCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCCce---ecCCC----ceEeeeeeCC
Q 005240 113 PKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAK---DFGTP----AVYTAVEPSP 184 (706)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~~---~lt~~----~~~~~~~~Sp 184 (706)
+.+.++|+ +++.. .+... +....+.|||
T Consensus 83 --------------------------------------------g~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~Sp 118 (432)
T d1qksa2 83 --------------------------------------------GKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGW 118 (432)
T ss_dssp --------------------------------------------SEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTC
T ss_pred --------------------------------------------CCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCC
Confidence 46777888 44332 23222 3445678899
Q ss_pred CCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCC-CcceeeecCCCceEEEEEec
Q 005240 185 DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREG-MRSISWRADKPSTLYWVEAQ 263 (706)
Q Consensus 185 DG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g-~~~~~~spdg~~~l~~~~~~ 263 (706)
||++|+.+.... ..+.+||..+++................+. +.+ ...+.+||||+. +++.. .
T Consensus 119 DG~~l~vs~~~~------------~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~s~dg~~-~~vs~-~ 182 (432)
T d1qksa2 119 EDKYAIAGAYWP------------PQYVIMDGETLEPKKIQSTRGMTYDEQEYH--PEPRVAAILASHYRPE-FIVNV-K 182 (432)
T ss_dssp TTTEEEEEEEET------------TEEEEEETTTCCEEEEEECCEECTTTCCEE--SCCCEEEEEECSSSSE-EEEEE-T
T ss_pred CCCEEEEEcCCC------------CeEEEEeCccccceeeeccCCccccceecc--CCCceeEEEECCCCCE-EEEEE-c
Confidence 999998766542 479999999776655443322111000000 011 225678888876 44332 1
Q ss_pred cCCCCccccCccceeeeecCCCCCCCCceEEe--ecccccccceecCCCceEEEEeeccccceEEEEEcCCCC
Q 005240 264 DRGDANVEVSPRDIIYTQPAEPAEGEKPEILH--KLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK 334 (706)
Q Consensus 264 ~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~--~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~ 334 (706)
..+.+.+++. .+.+...+. ........+.|+|||++++..... ...+..++.++.
T Consensus 183 ----------~~~~i~~~d~---~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~---~~~v~v~d~~~~ 239 (432)
T d1qksa2 183 ----------ETGKILLVDY---TDLNNLKTTEISAERFLHDGGLDGSHRYFITAANA---RNKLVVIDTKEG 239 (432)
T ss_dssp ----------TTTEEEEEET---TCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGG---GTEEEEEETTTT
T ss_pred ----------cCCeEEEEEc---cCCCcceEEEEcccCccccceECCCCCEEEEeccc---cceEEEeecccc
Confidence 2235777777 444433332 234456778999999998877532 335777887773
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=6.5e-11 Score=119.97 Aligned_cols=250 Identities=9% Similarity=-0.006 Sum_probs=151.3
Q ss_pred ceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccc
Q 005240 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (706)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 85 (706)
.|.|+|+....................+...+|||||+.|+.... + ..|.++|+.....+........
T Consensus 73 ~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~--------d--g~i~iwd~~~~~~~~~~~~~~~-- 140 (337)
T d1gxra_ 73 CVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGE--------A--STLSIWDLAAPTPRIKAELTSS-- 140 (337)
T ss_dssp EEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEES--------S--SEEEEEECCCC--EEEEEEECS--
T ss_pred EEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeec--------c--cccccccccccccccccccccc--
Confidence 488999977322222233221122335788999999999977542 3 4666777665433222111111
Q ss_pred cccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-
Q 005240 86 NAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL- 164 (706)
Q Consensus 86 ~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l- 164 (706)
...+....|+||+..|+..... ..+..+++
T Consensus 141 ~~~v~~~~~~~~~~~l~s~~~d-------------------------------------------------~~i~~~~~~ 171 (337)
T d1gxra_ 141 APACYALAISPDSKVCFSCCSD-------------------------------------------------GNIAVWDLH 171 (337)
T ss_dssp SSCEEEEEECTTSSEEEEEETT-------------------------------------------------SCEEEEETT
T ss_pred cccccccccccccccccccccc-------------------------------------------------ccccccccc
Confidence 1125677899999988765421 45677777
Q ss_pred CCCceec-CCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCC
Q 005240 165 DGTAKDF-GTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVRE 242 (706)
Q Consensus 165 ~g~~~~l-t~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~ 242 (706)
+++.... ... ..+..++|+|+|+.++..... ..+.+|++..++........ .
T Consensus 172 ~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d-------------~~v~i~d~~~~~~~~~~~~~-------------~ 225 (337)
T d1gxra_ 172 NQTLVRQFQGHTDGASCIDISNDGTKLWTGGLD-------------NTVRSWDLREGRQLQQHDFT-------------S 225 (337)
T ss_dssp TTEEEEEECCCSSCEEEEEECTTSSEEEEEETT-------------SEEEEEETTTTEEEEEEECS-------------S
T ss_pred ccccccccccccccccccccccccccccccccc-------------ccccccccccceeecccccc-------------c
Confidence 4443333 222 577889999999999876543 37899999866543322221 1
Q ss_pred CCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeecccc
Q 005240 243 GMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTS 322 (706)
Q Consensus 243 g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~ 322 (706)
.+..+.|+|+++. |+... . ...+.++|+ ..++..........+..+.|+|||+.|+..+.+
T Consensus 226 ~i~~l~~~~~~~~-l~~~~-~-----------d~~i~i~d~---~~~~~~~~~~~~~~i~~v~~s~~g~~l~s~s~D--- 286 (337)
T d1gxra_ 226 QIFSLGYCPTGEW-LAVGM-E-----------SSNVEVLHV---NKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKD--- 286 (337)
T ss_dssp CEEEEEECTTSSE-EEEEE-T-----------TSCEEEEET---TSSCEEEECCCSSCEEEEEECTTSSEEEEEETT---
T ss_pred ceEEEEEcccccc-cceec-c-----------ccccccccc---cccccccccccccccceEEECCCCCEEEEEeCC---
Confidence 2346789999986 54321 1 124778887 555555555567778899999999988876522
Q ss_pred ceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEee
Q 005240 323 QTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 323 ~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 371 (706)
..|.++|+.++ +........ . ....+.|+|||++|+...
T Consensus 287 -g~i~iwd~~~~--~~~~~~~~~-~------~v~~~~~s~d~~~l~t~s 325 (337)
T d1gxra_ 287 -NLLNAWRTPYG--ASIFQSKES-S------SVLSCDISVDDKYIVTGS 325 (337)
T ss_dssp -SEEEEEETTTC--CEEEEEECS-S------CEEEEEECTTSCEEEEEE
T ss_pred -CeEEEEECCCC--CEEEEccCC-C------CEEEEEEeCCCCEEEEEe
Confidence 34677787774 233222211 1 122367899999887653
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.40 E-value=2.3e-11 Score=121.98 Aligned_cols=230 Identities=12% Similarity=0.071 Sum_probs=132.4
Q ss_pred ceEEEEcc-CCC-ceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCee---EEcccCCCC
Q 005240 157 AQLVLGSL-DGT-AKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV---RELCDLPPA 230 (706)
Q Consensus 157 ~~l~~~~l-~g~-~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~l~~~~~~ 230 (706)
..++++++ +++ .+.++.. ..+..++|||||++|+..+.+ ..|.+|++.+.+. ..+....
T Consensus 38 ~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~d-------------g~i~iwd~~~~~~~~~~~~~~~~-- 102 (311)
T d1nr0a1 38 TSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVH-------------GNVRIWDTTQTTHILKTTIPVFS-- 102 (311)
T ss_dssp TEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETT-------------SEEEEEESSSTTCCEEEEEECSS--
T ss_pred CEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccC-------------ceEeeeeeecccccccccccccc--
Confidence 46788888 444 4445554 789999999999999755543 3799999985432 1222111
Q ss_pred CCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCc-eEEeecccccccceecCC
Q 005240 231 EDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP-EILHKLDLRFRSVSWCDD 309 (706)
Q Consensus 231 ~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~-~~l~~~~~~~~~~~wspD 309 (706)
..+..+.|+||++. |+... .+.+. .+.+++. +.++. ..+..+...+..+.|+|+
T Consensus 103 -----------~~v~~v~~s~d~~~-l~~~~--~~~~~--------~~~v~~~---~~~~~~~~l~~h~~~v~~v~~~~~ 157 (311)
T d1nr0a1 103 -----------GPVKDISWDSESKR-IAAVG--EGRER--------FGHVFLF---DTGTSNGNLTGQARAMNSVDFKPS 157 (311)
T ss_dssp -----------SCEEEEEECTTSCE-EEEEE--CCSSC--------SEEEEET---TTCCBCBCCCCCSSCEEEEEECSS
T ss_pred -----------Cccccccccccccc-ccccc--ccccc--------ccccccc---cccccccccccccccccccccccc
Confidence 12457899999986 54332 11111 2445555 33333 445555667888999999
Q ss_pred CceEEEEeeccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCC
Q 005240 310 SLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFT 389 (706)
Q Consensus 310 g~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~ 389 (706)
+..++.+...+ + .|.++|+.+. +........-.. ...+.|+|+|++++....+ +
T Consensus 158 ~~~~l~sgs~d-~--~i~i~d~~~~--~~~~~~~~~~~~------i~~v~~~p~~~~l~~~~~d----~----------- 211 (311)
T d1nr0a1 158 RPFRIISGSDD-N--TVAIFEGPPF--KFKSTFGEHTKF------VHSVRYNPDGSLFASTGGD----G----------- 211 (311)
T ss_dssp SSCEEEEEETT-S--CEEEEETTTB--EEEEEECCCSSC------EEEEEECTTSSEEEEEETT----S-----------
T ss_pred ceeeecccccc-c--cccccccccc--cccccccccccc------ccccccCcccccccccccc----c-----------
Confidence 98755433222 2 3666677763 223322211111 1236789999988765421 1
Q ss_pred CCCCCCceeeeecCCCceeeeecccchhhhhhhhhhccCCCceecccCCCEEEEEEecCCCCcEEEEEECCCCceeE
Q 005240 390 PEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQ 466 (706)
Q Consensus 390 ~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~p~~v~~~~~~~~~~~~ 466 (706)
.+..+|..+++.......... ....+........|+||++.|+.. +.. ..|++||+++++..+
T Consensus 212 ------~v~~~d~~~~~~~~~~~~~~~----~~~~h~~~V~~~~~s~~~~~l~tg-s~D---g~v~iwd~~t~~~~~ 274 (311)
T d1nr0a1 212 ------TIVLYNGVDGTKTGVFEDDSL----KNVAHSGSVFGLTWSPDGTKIASA-SAD---KTIKIWNVATLKVEK 274 (311)
T ss_dssp ------CEEEEETTTCCEEEECBCTTS----SSCSSSSCEEEEEECTTSSEEEEE-ETT---SEEEEEETTTTEEEE
T ss_pred ------ccccccccccccccccccccc----ccccccccccccccCCCCCEEEEE-eCC---CeEEEEECCCCcEEE
Confidence 244566665544333322110 011111222357899999877754 333 259999998887654
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.39 E-value=7.8e-11 Score=116.81 Aligned_cols=222 Identities=11% Similarity=0.076 Sum_probs=130.0
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~ 111 (706)
.+..++|||||++||..+. + ..|.++|+++++..+...... ...+..+.|+|||+.++...+
T Consensus 14 ~V~~l~~s~dg~~l~s~s~--------D--g~v~vWd~~~~~~~~~~~~~h---~~~v~~v~~~~~g~~~~~~~d----- 75 (299)
T d1nr0a2 14 AITALSSSADGKTLFSADA--------E--GHINSWDISTGISNRVFPDVH---ATMITGIKTTSKGDLFTVSWD----- 75 (299)
T ss_dssp CEEEEEECTTSSEEEEEET--------T--SCEEEEETTTCCEEECSSCSC---SSCEEEEEECTTSCEEEEETT-----
T ss_pred CcEEEEECCCCCEEEEEcC--------C--CeEEEEECCCCcEEEEEcCCC---CCcEEEEEeeccceeecccce-----
Confidence 4888999999999987542 3 457777998887666542211 113678999999986554321
Q ss_pred CCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCC-Cce---ecCCC--ceEeeeeeCCC
Q 005240 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TAK---DFGTP--AVYTAVEPSPD 185 (706)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g-~~~---~lt~~--~~~~~~~~SpD 185 (706)
..+.++++.+ ... .+... ..+..+.|+||
T Consensus 76 ---------------------------------------------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 110 (299)
T d1nr0a2 76 ---------------------------------------------DHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSAD 110 (299)
T ss_dssp ---------------------------------------------TEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTT
T ss_pred ---------------------------------------------eeEEEeccCCccccccccccccccccccccccccc
Confidence 3555666633 111 11111 45668899999
Q ss_pred CcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccC
Q 005240 186 QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDR 265 (706)
Q Consensus 186 G~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~ 265 (706)
|+.++.... ..+.+|+... ...+... .....++|+||++. |+... .
T Consensus 111 g~~~~~~~~--------------~~i~~~~~~~--~~~~~~~--------------~~~~~~~~s~~~~~-l~~g~-~-- 156 (299)
T d1nr0a2 111 GDIAVAACY--------------KHIAIYSHGK--LTEVPIS--------------YNSSCVALSNDKQF-VAVGG-Q-- 156 (299)
T ss_dssp SSCEEEEES--------------SEEEEEETTE--EEEEECS--------------SCEEEEEECTTSCE-EEEEE-T--
T ss_pred ccccccccc--------------cccccccccc--ccccccc--------------cccccccccccccc-ccccc-c--
Confidence 998765543 2577777432 2222111 11235789999986 54321 1
Q ss_pred CCCccccCccceeeeecCCCCCCCCceEE--eecccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeec
Q 005240 266 GDANVEVSPRDIIYTQPAEPAEGEKPEIL--HKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFD 343 (706)
Q Consensus 266 ~~~~~~~~~~~~l~~~d~~~~~~~~~~~l--~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~ 343 (706)
...|.++|+ .+++...+ ......+..+.|+|+++.|+..+. ...|+++|+.++. ....+..
T Consensus 157 ---------dg~i~~~d~---~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----d~~i~~~~~~~~~-~~~~~~~ 219 (299)
T d1nr0a2 157 ---------DSKVHVYKL---SGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQ----SRKVIPYSVANNF-ELAHTNS 219 (299)
T ss_dssp ---------TSEEEEEEE---ETTEEEEEEEEECSSCEEEEEECTTSSEEEEEET----TSCEEEEEGGGTT-EESCCCC
T ss_pred ---------ccccccccc---cccccccccccccccccccccccccccccccccc----ccccccccccccc-ccccccc
Confidence 124778887 55554443 344667888999999998887642 2236666766532 1111100
Q ss_pred CcccccccCCCCCceEeccCCCEEEEee
Q 005240 344 RVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 344 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 371 (706)
... .......+.|+|+|++|+...
T Consensus 220 ~~~----h~~~v~~l~~s~~~~~l~sgs 243 (299)
T d1nr0a2 220 WTF----HTAKVACVSWSPDNVRLATGS 243 (299)
T ss_dssp CCC----CSSCEEEEEECTTSSEEEEEE
T ss_pred ccc----cccccccccccccccceEEEc
Confidence 000 001122367899999887754
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.39 E-value=5.2e-11 Score=122.40 Aligned_cols=315 Identities=6% Similarity=-0.110 Sum_probs=172.5
Q ss_pred ccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCC
Q 005240 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDP 112 (706)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~ 112 (706)
....+.+|||++.+.... ....+..+||++|.++++....+.... ...++|||||+.|++.........
T Consensus 22 ~~~~a~~~~~~~~~v~~~-----~~~~g~~~~~~~d~~~~~~~~~~~~~~------~~~~a~spDg~~i~~~~~~~~~~~ 90 (368)
T d1mdah_ 22 SCDHGPGAISRRSHITLP-----AYFAGTTENWVSCAGCGVTLGHSLGAF------LSLAVAGHSGSDFALASTSFARSA 90 (368)
T ss_dssp CBCCCCCCCTTEEEEEEC-----TTTCSSEEEEEEETTTTEEEEEEEECT------TCEEEECTTSSCEEEEEEEETTTT
T ss_pred ccccccCCCCcceeEEee-----ccCCCcceEEEEeCCCCcEEEEEeCCC------CCcceECCCCCEEEEEcccCcccc
Confidence 344566888987644332 112566899999999999877664433 346899999999998643100000
Q ss_pred CCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCCce-ecC--CC------ceEeeeee
Q 005240 113 PKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAK-DFG--TP------AVYTAVEP 182 (706)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~~-~lt--~~------~~~~~~~~ 182 (706)
.| .....|.++|. ++++. .+. .. .....++|
T Consensus 91 -------~g--------------------------------~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~ 131 (368)
T d1mdah_ 91 -------KG--------------------------------KRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGN 131 (368)
T ss_dssp -------SS--------------------------------SEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEE
T ss_pred -------cc--------------------------------ccCCeEEEEECCCCcEeeeecCCccceecccCCccceEE
Confidence 00 02256888998 55432 221 11 22346899
Q ss_pred CCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCC-CcceeeecCCCceEEEEE
Q 005240 183 SPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREG-MRSISWRADKPSTLYWVE 261 (706)
Q Consensus 183 SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g-~~~~~~spdg~~~l~~~~ 261 (706)
||||++|++.... ...+.+||+.+++.......+.... .++ .+ ...+.+++||+. +++..
T Consensus 132 SpDGk~l~va~~~------------~~~v~~~d~~~~~~~~~~~~~~~~~---~~~---~~~~~~v~~~~Dg~~-~~~~~ 192 (368)
T d1mdah_ 132 CASSACLLFFLFG------------SSAAAGLSVPGASDDQLTKSASCFH---IHP---GAAATHYLGSCPASL-AASDL 192 (368)
T ss_dssp CTTSSCEEEEECS------------SSCEEEEEETTTEEEEEEECSSCCC---CEE---EETTEEECCCCTTSC-EEEEC
T ss_pred CCCCCEEEEEeCC------------CCeEEEEECCCCcEeEEeeccCcce---Ecc---CCCceEEEEcCCCCE-EEEEe
Confidence 9999999876543 2478999999877655443322110 000 11 224577888875 33321
Q ss_pred eccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceee
Q 005240 262 AQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVL 341 (706)
Q Consensus 262 ~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l 341 (706)
.+.+.. .+.... ..............+.+++..++.. ..+++.++..++ +...+
T Consensus 193 -~~~~~~---------~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~~~------~~~v~~~~~~~~--~~~~~ 246 (368)
T d1mdah_ 193 -AAAPAA---------AGIVGA--------QCTGAQNCSSQAAQANYPGMLVWAV------ASSILQGDIPAA--GATMK 246 (368)
T ss_dssp -CSSCCC---------CEECCC--------CSCTTSCBCSCCEEETTTTEEEECB------SSCCEEEECCSS--CCEEE
T ss_pred -cCCcee---------eeeeec--------ccccccccceeecccccCcEEEEec------CCCEEEEeecCC--ceEEE
Confidence 111111 111110 0001122334456677777655421 124667776663 23333
Q ss_pred ecCccc-----ccccCCC-CCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeeecccc
Q 005240 342 FDRVFE-----NVYSDPG-SPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNR 415 (706)
Q Consensus 342 ~~~~~~-----~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~ 415 (706)
...... .....|+ ...++++++++.+++..... +.........++.+|+++++....+....
T Consensus 247 ~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~------------~~~~~~~~~~v~v~D~~t~~~~~~~~~~~ 314 (368)
T d1mdah_ 247 AAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEH------------SRSCLAAAENTSSVTASVGQTSGPISNGH 314 (368)
T ss_dssp CCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEEC------------SSCTTSCEEEEEEEESSSCCEEECCEEEE
T ss_pred eecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCC------------CceeecCCceEEEEECCCCcEeEEecCCC
Confidence 111110 0011222 23467788888877664321 11111122358889999987544443321
Q ss_pred hhhhhhhhhhccCCCceecccCCCEEEEEEecCCCCcEEEEEECCCCceeEee
Q 005240 416 EKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQIT 468 (706)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~p~~v~~~~~~~~~~~~lt 468 (706)
. ...+.|||||+.++|+..... ..|++||+.+++..+..
T Consensus 315 ~------------~~~~a~spDG~~~ly~s~~~~--~~v~v~D~~tgk~~~~i 353 (368)
T d1mdah_ 315 D------------SDAIIAAQDGASDNYANSAGT--EVLDIYDAASDQDQSSV 353 (368)
T ss_dssp E------------ECEEEECCSSSCEEEEEETTT--TEEEEEESSSCEEEEEC
T ss_pred c------------eeEEEECCCCCEEEEEEeCCC--CeEEEEECCCCCEEEEE
Confidence 1 124689999998777665543 57999999999865543
|
| >d1fj2a_ c.69.1.14 (A:) Acyl protein thioesterase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Acyl protein thioesterase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=1.6e-11 Score=116.99 Aligned_cols=112 Identities=14% Similarity=0.097 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCCCC-------------CCCcc
Q 005240 579 VEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKT-------------LTPFG 645 (706)
Q Consensus 579 ~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d~~-------------~~~~~ 645 (706)
.....+.+...++.+.+. .+|++||+++|+|+||++|+.++.++|++|+++++++|..... ..|..
T Consensus 89 i~~~~~~l~~li~~~~~~-~i~~~ri~l~GfS~Gg~~a~~~~~~~~~~~~gvi~~sg~lp~~~~~~~~~~~~~~~~~Pvl 167 (229)
T d1fj2a_ 89 IKQAAENIKALIDQEVKN-GIPSNRIILGGFSQGGALSLYTALTTQQKLAGVTALSCWLPLRASFPQGPIGGANRDISIL 167 (229)
T ss_dssp HHHHHHHHHHHHHHHHHT-TCCGGGEEEEEETHHHHHHHHHHTTCSSCCSEEEEESCCCTTGGGSCSSCCCSTTTTCCEE
T ss_pred HHHHHHHHHHHhhhhhhc-CCCccceeeeecccchHHHHHHHHhhccccCccccccccccccccccccccccccccCcee
Confidence 344455555556655544 4899999999999999999999999999999999998843210 01211
Q ss_pred ------------chHHHHHHHHHh--CCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHhc
Q 005240 646 ------------FQAERFFDALKG--HGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCL 696 (706)
Q Consensus 646 ------------~~~~~~~~~l~~--~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~~~~l~ 696 (706)
...+++++.|++ .+.++++++|||.+|.+.. +.++.+.+||+++|.
T Consensus 168 i~hG~~D~~vp~~~~~~~~~~L~~~~~~~~v~~~~~~g~gH~i~~-----~~~~~~~~wL~~~Lp 227 (229)
T d1fj2a_ 168 QCHGDCDPLVPLMFGSLTVEKLKTLVNPANVTFKTYEGMMHSSCQ-----QEMMDVKQFIDKLLP 227 (229)
T ss_dssp EEEETTCSSSCHHHHHHHHHHHHHHSCGGGEEEEEETTCCSSCCH-----HHHHHHHHHHHHHSC
T ss_pred EEEcCCCCeeCHHHHHHHHHHHHhcCCCCceEEEEeCCCCCccCH-----HHHHHHHHHHHhHCc
Confidence 123488888887 4678999999999998752 567889999999984
|
| >d1r88a_ c.69.1.3 (A:) Antigen pt51/mpb51 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen pt51/mpb51 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.38 E-value=4.9e-12 Score=123.77 Aligned_cols=136 Identities=11% Similarity=0.019 Sum_probs=91.6
Q ss_pred ceEEEEEEcc-CCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEE
Q 005240 481 QKEMIKYQRK-DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 559 (706)
Q Consensus 481 ~~~~~~~~~~-dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~ 559 (706)
+.|.+++.+. .|.+|+..++.|. .|+|++.||.+-. ....+|.... ...+.....+++|+
T Consensus 3 ~~e~~~v~s~~~~r~~~~~v~~~~---------~pvlylLhG~~g~------~~~~~w~~~~----~~~~~~~~~~~iVV 63 (267)
T d1r88a_ 3 PYENLMVPSPSMGRDIPVAFLAGG---------PHAVYLLDAFNAG------PDVSNWVTAG----NAMNTLAGKGISVV 63 (267)
T ss_dssp CCEEEEEEETTTTEEEEEEEECCS---------SSEEEEECCSSCC------SSSCHHHHTS----CHHHHHTTSSSEEE
T ss_pred ceEEEEEecccCCceeeEEEECCC---------CCEEEEcCCCCCC------CCcchhhhcc----HHHHHHhhCCeEEE
Confidence 4577888875 6889998887542 4899999994210 0011222211 23455667999999
Q ss_pred EcCCCCcCCCCCCCC---chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCC
Q 005240 560 AGPSIPIIGEGDKLP---NDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 636 (706)
Q Consensus 560 ~~~~~~~~g~g~~~~---~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~ 636 (706)
+++.-.. ++...+. ...+..-+.+++ +.++.++..+|++|++|+|+||||++|+.+++++|++|+++++++|.
T Consensus 64 ~p~g~~~-~~y~~~~~~~~~~~~tfl~~eL---~~~i~~~~~~d~~r~~i~G~SmGG~~Al~la~~~Pd~F~av~~~SG~ 139 (267)
T d1r88a_ 64 APAGGAY-SMYTNWEQDGSKQWDTFLSAEL---PDWLAANRGLAPGGHAAVGAAQGGYGAMALAAFHPDRFGFAGSMSGF 139 (267)
T ss_dssp EECCCTT-STTSBCSSCTTCBHHHHHHTHH---HHHHHHHSCCCSSCEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCC
T ss_pred EECCCCC-cCCccccccccccHHHHHHHHH---HHHHHHhcCCCCCceEEEEEcchHHHHHHHHHhCcccccEEEEeCCc
Confidence 9765222 2222221 122333334444 45676776799999999999999999999999999999999999998
Q ss_pred CCC
Q 005240 637 YNK 639 (706)
Q Consensus 637 ~d~ 639 (706)
++.
T Consensus 140 ~~~ 142 (267)
T d1r88a_ 140 LYP 142 (267)
T ss_dssp CCT
T ss_pred cCC
Confidence 653
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.37 E-value=8.5e-12 Score=131.24 Aligned_cols=85 Identities=14% Similarity=-0.006 Sum_probs=54.4
Q ss_pred cceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCC-Cc
Q 005240 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESP-DI 83 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~-~~ 83 (706)
..|.|.|+.. ++... .++.+..+..++|||||++|+.+ ++ + ..|.++|+++++...+.... ..
T Consensus 42 g~v~vwD~~t----~~~~~--~l~~g~~~~~vafSPDGk~l~~~-~~-------d--~~v~vwd~~t~~~~~~~~i~~~~ 105 (426)
T d1hzua2 42 GQIALVDGDS----KKIVK--VIDTGYAVHISRMSASGRYLLVI-GR-------D--ARIDMIDLWAKEPTKVAEIKIGI 105 (426)
T ss_dssp TEEEEEETTT----CSEEE--EEECCSSEEEEEECTTSCEEEEE-ET-------T--SEEEEEETTSSSCEEEEEEECCS
T ss_pred CEEEEEECCC----CcEEE--EEeCCCCeeEEEECCCCCEEEEE-eC-------C--CCEEEEEccCCceeEEEEEeCCC
Confidence 4688888866 65433 34566668889999999998654 21 2 47888999888754332111 11
Q ss_pred cccccccceEEecCCcEEEEEe
Q 005240 84 CLNAVFGSFVWVNNSTLLIFTI 105 (706)
Q Consensus 84 ~~~~~~~~~~wSpDg~~l~~~~ 105 (706)
.....+.++.|||||++|+...
T Consensus 106 ~~~~~~~s~~~spDG~~l~v~~ 127 (426)
T d1hzua2 106 EARSVESSKFKGYEDRYTIAGA 127 (426)
T ss_dssp EEEEEEECCSTTCTTTEEEEEE
T ss_pred CCcceEEeeeecCCCCEEEEee
Confidence 1111234677889999987664
|
| >d1dqza_ c.69.1.3 (A:) Antigen 85c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen 85c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.35 E-value=5.5e-12 Score=124.37 Aligned_cols=138 Identities=13% Similarity=-0.012 Sum_probs=89.7
Q ss_pred CceEEEEEEcc-CCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEE
Q 005240 480 LQKEMIKYQRK-DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAV 558 (706)
Q Consensus 480 ~~~~~~~~~~~-dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v 558 (706)
.+++.+++.+. -|..|+..+. + +++|+|++.||.+-. .-..+|.... ...+.+.+.|++|
T Consensus 4 ~~v~~~~~~s~~~~r~i~~~~~-~--------~~~p~lyllhG~~g~------~d~~~W~~~~----~~~~~~~~~~~iv 64 (280)
T d1dqza_ 4 LPVEYLQVPSASMGRDIKVQFQ-G--------GGPHAVYLLDGLRAQ------DDYNGWDINT----PAFEEYYQSGLSV 64 (280)
T ss_dssp SCEEEEEEEETTTTEEEEEEEE-C--------CSSSEEEECCCTTCC------SSSCHHHHHS----CHHHHHTTSSSEE
T ss_pred cEEEEEEEecccCCCcceEEee-C--------CCCCEEEECCCCCCC------Cccchhhhcc----hHHHHHHhCCcEE
Confidence 35677777664 6788887763 1 137999999995310 0011111111 2345667799999
Q ss_pred EEcCCCCcCCCCCC---------CCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeE
Q 005240 559 LAGPSIPIIGEGDK---------LPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCC 629 (706)
Q Consensus 559 ~~~~~~~~~g~g~~---------~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a 629 (706)
++++......+... .....+..-..+++ +.+|.++..+|++|++|+|+||||++|+.+++++|++|+|
T Consensus 65 V~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el---~~~i~~~~~~d~~r~~i~G~SmGG~~Al~lA~~~Pd~F~a 141 (280)
T d1dqza_ 65 IMPVGGQSSFYTDWYQPSQSNGQNYTYKWETFLTREM---PAWLQANKGVSPTGNAAVGLSMSGGSALILAAYYPQQFPY 141 (280)
T ss_dssp EEECCCTTCTTSBCSSSCTTTTCCSCCBHHHHHHTHH---HHHHHHHHCCCSSSCEEEEETHHHHHHHHHHHHCTTTCSE
T ss_pred EEECCCCCCcCccccCCcccccCCcchhHHHHHHHHH---HHHHHHhcCCCCCceEEEEechHHHHHHHHHHhCcCceeE
Confidence 99775322111110 01112333334444 5556666668999999999999999999999999999999
Q ss_pred EEeccCCCCC
Q 005240 630 GIARSGSYNK 639 (706)
Q Consensus 630 ~v~~~~~~d~ 639 (706)
+++++|.++.
T Consensus 142 v~s~SG~~~~ 151 (280)
T d1dqza_ 142 AASLSGFLNP 151 (280)
T ss_dssp EEEESCCCCT
T ss_pred EEEecCccCc
Confidence 9999998754
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.35 E-value=7.7e-11 Score=121.22 Aligned_cols=229 Identities=14% Similarity=0.048 Sum_probs=129.3
Q ss_pred ccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCC
Q 005240 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDP 112 (706)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~ 112 (706)
+...+|||||+.||+... ...|.+++.++++..++....++ ...+..+.|||||++|+..+.+
T Consensus 10 It~~~~s~dg~~la~~~~----------~~~i~iw~~~~~~~~~~~~l~gH--~~~V~~l~fsp~~~~l~s~s~D----- 72 (371)
T d1k8kc_ 10 ISCHAWNKDRTQIAICPN----------NHEVHIYEKSGNKWVQVHELKEH--NGQVTGVDWAPDSNRIVTCGTD----- 72 (371)
T ss_dssp CCEEEECTTSSEEEEECS----------SSEEEEEEEETTEEEEEEEEECC--SSCEEEEEEETTTTEEEEEETT-----
T ss_pred eEEEEECCCCCEEEEEeC----------CCEEEEEECCCCCEEEEEEecCC--CCCEEEEEECCCCCEEEEEECC-----
Confidence 778999999999998642 24677778877765554322111 1137889999999988865421
Q ss_pred CCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCCc--ee-cCCC-ceEeeeeeCCCCc
Q 005240 113 PKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTA--KD-FGTP-AVYTAVEPSPDQK 187 (706)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~--~~-lt~~-~~~~~~~~SpDG~ 187 (706)
..|.++++ +++. .. +... ..+..++|+|||+
T Consensus 73 --------------------------------------------~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~ 108 (371)
T d1k8kc_ 73 --------------------------------------------RNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEK 108 (371)
T ss_dssp --------------------------------------------SCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSS
T ss_pred --------------------------------------------CeEEEEeecccccccccccccccccccccccccccc
Confidence 45666777 3422 22 2222 5688999999999
Q ss_pred EEEEEeeccCcccccccccccceEEEEecCCCe--eEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccC
Q 005240 188 YVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL--VRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDR 265 (706)
Q Consensus 188 ~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~ 265 (706)
+|+..+..+ .+.+|+++... ........... ..+..+.|+||++. |+... .++
T Consensus 109 ~l~~~s~d~-------------~i~i~~~~~~~~~~~~~~~~~~~~----------~~v~~v~~~p~~~~-l~s~s-~D~ 163 (371)
T d1k8kc_ 109 KFAVGSGSR-------------VISICYFEQENDWWVCKHIKKPIR----------STVLSLDWHPNSVL-LAAGS-CDF 163 (371)
T ss_dssp EEEEEETTS-------------SEEEEEEETTTTEEEEEEECTTCC----------SCEEEEEECTTSSE-EEEEE-TTS
T ss_pred cceeecccC-------------cceeeeeecccccccccccccccc----------cccccccccccccc-eeccc-cCc
Confidence 998766442 45666655322 11111111110 12446899999986 54321 111
Q ss_pred CCCccccCccceeeeecCCCC-------------CCCCceEE---eecccccccceecCCCceEEEEeeccccceEEEEE
Q 005240 266 GDANVEVSPRDIIYTQPAEPA-------------EGEKPEIL---HKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLV 329 (706)
Q Consensus 266 ~~~~~~~~~~~~l~~~d~~~~-------------~~~~~~~l---~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~ 329 (706)
.+.+++.... .....+.+ ......+..++|+|||+.|+..+. ...|.++
T Consensus 164 -----------~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~----d~~i~iw 228 (371)
T d1k8kc_ 164 -----------KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSH----DSTVCLA 228 (371)
T ss_dssp -----------CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEET----TTEEEEE
T ss_pred -----------EEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeeccccccccccc----CCcceEE
Confidence 1333332100 00000111 223455778899999998887652 2346677
Q ss_pred cCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEe
Q 005240 330 CPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAK 370 (706)
Q Consensus 330 d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 370 (706)
|+.++ ............ ...+.|+|||+.|+..
T Consensus 229 d~~~~--~~~~~~~~~~~~------v~s~~fs~d~~~la~g 261 (371)
T d1k8kc_ 229 DADKK--MAVATLASETLP------LLAVTFITESSLVAAG 261 (371)
T ss_dssp EGGGT--TEEEEEECSSCC------EEEEEEEETTEEEEEE
T ss_pred eeecc--cceeeeeccccc------ceeeeecCCCCEEEEE
Confidence 77663 222222221111 1236789999877653
|
| >d2r8ba1 c.69.1.14 (A:44-246) Uncharacterized protein Atu2452 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Uncharacterized protein Atu2452 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.33 E-value=1e-12 Score=123.14 Aligned_cols=90 Identities=20% Similarity=0.163 Sum_probs=74.2
Q ss_pred CCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCCCCCCC--------Ccc------------chHHHHHHHHHhC
Q 005240 599 ADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSYNKTLT--------PFG------------FQAERFFDALKGH 658 (706)
Q Consensus 599 id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~d~~~~--------~~~------------~~~~~~~~~l~~~ 658 (706)
+|+++|+++|+|+||.+++.++.++|+.+.++++.+|....... |.. -+.++++++|++.
T Consensus 93 ~~~~~v~l~G~S~Gg~~a~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~hG~~D~~vp~~~~~~~~~~L~~~ 172 (203)
T d2r8ba1 93 YQAGPVIGLGFSNGANILANVLIEQPELFDAAVLMHPLIPFEPKISPAKPTRRVLITAGERDPICPVQLTKALEESLKAQ 172 (203)
T ss_dssp HTCCSEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCCCCSCCCCCCCCTTCEEEEEEETTCTTSCHHHHHHHHHHHHHH
T ss_pred CCCceEEEEEecCHHHHHHHHHHhhhhcccceeeeccccccccccccccccchhhccccCCCCcccHHHHHHHHHHHHHC
Confidence 68899999999999999999999999999999999997643211 110 1345999999999
Q ss_pred CCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHH
Q 005240 659 GALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKY 694 (706)
Q Consensus 659 ~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~~~~ 694 (706)
|+++++++||+ +|.+.. +..+.+.+||.+|
T Consensus 173 g~~v~~~~~~g-gH~~~~-----~~~~~~~~wl~~~ 202 (203)
T d2r8ba1 173 GGTVETVWHPG-GHEIRS-----GEIDAVRGFLAAY 202 (203)
T ss_dssp SSEEEEEEESS-CSSCCH-----HHHHHHHHHHGGG
T ss_pred CCCEEEEEECC-CCcCCH-----HHHHHHHHHHHhc
Confidence 99999999997 799763 4578899999875
|
| >d1imja_ c.69.1.23 (A:) Ccg1/TafII250-interacting factor B (Cib) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Ccg1/TafII250-interacting factor B (Cib) domain: Ccg1/TafII250-interacting factor B (Cib) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.32 E-value=3.4e-13 Score=126.67 Aligned_cols=181 Identities=13% Similarity=0.025 Sum_probs=111.2
Q ss_pred eEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEc
Q 005240 482 KEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAG 561 (706)
Q Consensus 482 ~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~ 561 (706)
.++-++. .+|..|+.....|.. .+ +.|.||++||.+... ..+. ....+..|+++||.|+++
T Consensus 6 ~~e~~i~-v~G~~i~y~~~~~~~-~~----~~~~vvllHG~~~~~-----------~~w~--~~~~~~~la~~gy~via~ 66 (208)
T d1imja_ 6 QREGTIQ-VQGQALFFREALPGS-GQ----ARFSVLLLHGIRFSS-----------ETWQ--NLGTLHRLAQAGYRAVAI 66 (208)
T ss_dssp ECCCCEE-ETTEEECEEEEECSS-SC----CSCEEEECCCTTCCH-----------HHHH--HHTHHHHHHHTTCEEEEE
T ss_pred ceEEEEE-ECCEEEEEEEecCCC-CC----CCCeEEEECCCCCCh-----------hHHh--hhHHHHHHHHcCCeEEEe
Confidence 3333444 389999988888854 11 246788899964210 0010 001246788999999997
Q ss_pred CCCCcCCCCCCCCch---hh-HHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCC
Q 005240 562 PSIPIIGEGDKLPND---RF-VEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSY 637 (706)
Q Consensus 562 ~~~~~~g~g~~~~~~---~~-~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~ 637 (706)
+.+ |+|.+.... .+ .....+++.+.++.+ +.+++.++|+||||.+++.++.++|++++++|..+|..
T Consensus 67 D~~---G~G~S~~~~~~~~~~~~~~~~~l~~~~~~l------~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lV~~~p~~ 137 (208)
T d1imja_ 67 DLP---GLGHSKEAAAPAPIGELAPGSFLAAVVDAL------ELGPPVVISPSLSGMYSLPFLTAPGSQLPGFVPVAPIC 137 (208)
T ss_dssp CCT---TSGGGTTSCCSSCTTSCCCTHHHHHHHHHH------TCCSCEEEEEGGGHHHHHHHHTSTTCCCSEEEEESCSC
T ss_pred ecc---cccCCCCCCcccccchhhhhhhhhhccccc------ccccccccccCcHHHHHHHHHHHhhhhcceeeecCccc
Confidence 766 344332211 11 111122333333332 34789999999999999999999999999999999875
Q ss_pred CCCC---------CCccc--------hHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 005240 638 NKTL---------TPFGF--------QAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQK 693 (706)
Q Consensus 638 d~~~---------~~~~~--------~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~~~ 693 (706)
.... .|... .... .+.+ ..-...+++++||++|... ..+...+.+.+++||++
T Consensus 138 ~~~~~~~~~~~i~~P~Lii~G~~D~~~~~~-~~~~-~~~~~~~~~~i~~~gH~~~-~~~p~~~~~~l~~Fl~~ 207 (208)
T d1imja_ 138 TDKINAANYASVKTPALIVYGDQDPMGQTS-FEHL-KQLPNHRVLIMKGAGHPCY-LDKPEEWHTGLLDFLQG 207 (208)
T ss_dssp GGGSCHHHHHTCCSCEEEEEETTCHHHHHH-HHHH-TTSSSEEEEEETTCCTTHH-HHCHHHHHHHHHHHHHT
T ss_pred ccccccccccccccccccccCCcCcCCcHH-HHHH-HhCCCCeEEEECCCCCchh-hhCHHHHHHHHHHHHhc
Confidence 4222 23210 0111 1223 2334689999999999743 23456788889999874
|
| >d1vkha_ c.69.1.32 (A:) Putative serine hydrolase Ydr428c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Putative serine hydrolase Ydr428c domain: Putative serine hydrolase Ydr428c species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.32 E-value=4e-12 Score=124.20 Aligned_cols=148 Identities=14% Similarity=0.086 Sum_probs=99.1
Q ss_pred CceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCCCCchhhHHHHHHHHHHHHH
Q 005240 512 PLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVE 591 (706)
Q Consensus 512 ~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~ 591 (706)
+.|+|||+|||++..+. .+...+......++..+++.||.|+.++++...+. .....+.|+..+++
T Consensus 30 ~~~~vv~iHGGg~~~~~------~~~~~~~~~~~~l~~~~~~~g~~v~~~dYrl~p~~--------~~~~~~~d~~~~~~ 95 (263)
T d1vkha_ 30 TREAVIYIHGGAWNDPE------NTPNDFNQLANTIKSMDTESTVCQYSIEYRLSPEI--------TNPRNLYDAVSNIT 95 (263)
T ss_dssp CCEEEEEECCSTTTCTT------CCGGGGHHHHHHHHHHCTTCCEEEEEECCCCTTTS--------CTTHHHHHHHHHHH
T ss_pred CCcEEEEECCCCccCCC------CCcchHHHHHHHHHHHHHhCCeEEEEeccccCcch--------hhhHHHHhhhhhhh
Confidence 46999999999753211 01111110001123344578999999888754332 12345789999999
Q ss_pred HHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCC-----------------ceeEEEeccCCCCCCC-------------
Q 005240 592 EVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH-----------------LFCCGIARSGSYNKTL------------- 641 (706)
Q Consensus 592 ~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~-----------------~~~a~v~~~~~~d~~~------------- 641 (706)
|+.+.. ++.+|+|+|+|+||++++.++.+.++ .+.+.+...+.++...
T Consensus 96 ~l~~~~--~~~~i~l~G~S~Gg~lal~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (263)
T d1vkha_ 96 RLVKEK--GLTNINMVGHSVGATFIWQILAALKDPQEKMSEAQLQMLGLLQIVKRVFLLDGIYSLKELLIEYPEYDCFTR 173 (263)
T ss_dssp HHHHHH--TCCCEEEEEETHHHHHHHHHHTGGGSCTTTCCHHHHHHHHHHTTEEEEEEESCCCCHHHHHHHCGGGHHHHH
T ss_pred cccccc--cccceeeeccCcHHHHHHHHHHhccCccccccccccccccccccccccccccccccchhhhhhccccchhhh
Confidence 998874 66899999999999999998875432 4566666666654210
Q ss_pred -----CCcc------------------------------------chHHHHHHHHHhCCCcEEEEEeCCCCccCC
Q 005240 642 -----TPFG------------------------------------FQAERFFDALKGHGALSRLVLLPFEHHVYA 675 (706)
Q Consensus 642 -----~~~~------------------------------------~~~~~~~~~l~~~~~~~~~~~~~~~~H~~~ 675 (706)
.+.. -++.+|+++|++.+++++++++++++|...
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~lii~G~~D~~vp~~~s~~l~~~L~~~g~~~~~~~~~~~~H~~~ 248 (263)
T d1vkha_ 174 LAFPDGIQMYEEEPSRVMPYVKKALSRFSIDMHLVHSYSDELLTLRQTNCLISCLQDYQLSFKLYLDDLGLHNDV 248 (263)
T ss_dssp HHCTTCGGGCCCCHHHHHHHHHHHHHHHTCEEEEEEETTCSSCCTHHHHHHHHHHHHTTCCEEEEEECCCSGGGG
T ss_pred cccccccccccccccccCccccccccccCCCeeeeecCCCcccCHHHHHHHHHHHHHCCCCEEEEEECCCCchhh
Confidence 0000 022399999999999999999999999653
|
| >d1mtza_ c.69.1.7 (A:) Tricorn interacting factor F1 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Proline iminopeptidase-like domain: Tricorn interacting factor F1 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.31 E-value=5.1e-12 Score=124.51 Aligned_cols=119 Identities=17% Similarity=0.110 Sum_probs=83.6
Q ss_pred ccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCC
Q 005240 489 RKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIG 568 (706)
Q Consensus 489 ~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g 568 (706)
..||..|+...+-.++ + .|+||++||++-.+ ..+ ......+++.||.|++++.+ |
T Consensus 8 ~~~g~~i~y~~~g~~~---~----~~~iv~lHG~~g~~-----------~~~----~~~~~~~~~~~~~vi~~D~~---G 62 (290)
T d1mtza_ 8 KVNGIYIYYKLCKAPE---E----KAKLMTMHGGPGMS-----------HDY----LLSLRDMTKEGITVLFYDQF---G 62 (290)
T ss_dssp EETTEEEEEEEECCSS---C----SEEEEEECCTTTCC-----------SGG----GGGGGGGGGGTEEEEEECCT---T
T ss_pred EECCEEEEEEEcCCCC---C----CCeEEEECCCCCch-----------HHH----HHHHHHHHHCCCEEEEEeCC---C
Confidence 3589999877775432 1 37899999975211 111 12334567889999996665 5
Q ss_pred CCCCCCc---hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCCC
Q 005240 569 EGDKLPN---DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSY 637 (706)
Q Consensus 569 ~g~~~~~---~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~ 637 (706)
+|.+... ....+..++|+.+.++.+.. .+++.++||||||.+++.++.++|+++++++..++..
T Consensus 63 ~G~S~~~~~~~~~~~~~~~~l~~ll~~l~~-----~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 129 (290)
T d1mtza_ 63 CGRSEEPDQSKFTIDYGVEEAEALRSKLFG-----NEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSGGLS 129 (290)
T ss_dssp STTSCCCCGGGCSHHHHHHHHHHHHHHHHT-----TCCEEEEEETHHHHHHHHHHHHHGGGEEEEEEESCCS
T ss_pred Cccccccccccccccchhhhhhhhhccccc-----ccccceecccccchhhhhhhhcChhhheeeeeccccc
Confidence 6655432 12345667777777766532 3689999999999999999999999999999888753
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.29 E-value=9.2e-11 Score=119.34 Aligned_cols=294 Identities=11% Similarity=-0.034 Sum_probs=141.8
Q ss_pred ccceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCC-
Q 005240 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD- 82 (706)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~- 82 (706)
.+.|++.|+.. |+... .++.+ ....++|||||++|+.+...............|+++|+.+++.........
T Consensus 27 ~~~v~v~D~~t----g~~~~--~~~~g-~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~ 99 (355)
T d2bbkh_ 27 VTQQFVIDGEA----GRVIG--MIDGG-FLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDA 99 (355)
T ss_dssp SEEEEEEETTT----TEEEE--EEEEC-SSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTC
T ss_pred cCeEEEEECCC----CcEEE--EEECC-CCCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCc
Confidence 34688988866 65433 23444 344789999999998876422111111223579999999988655432111
Q ss_pred --ccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhh-hhhh-hcccce
Q 005240 83 --ICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDE-SLFD-YYTTAQ 158 (706)
Q Consensus 83 --~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~~~-~~~~~~ 158 (706)
.........+.|||||+++++......... .......+..+.....+.... .+.... .... ......
T Consensus 100 ~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~dg~~ 170 (355)
T d2bbkh_ 100 PRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAV-GVVDLEGKAFKRMLDVPDCYH--------IFPTAPDTFFMHCRDGSL 170 (355)
T ss_dssp CCCCBSCCGGGEEECTTSSEEEEEECSSSCEE-EEEETTTTEEEEEEECCSEEE--------EEEEETTEEEEEETTSCE
T ss_pred ceeecCCCCceEEEecCCCeeEEecCCCCcee-eeeecCCCcEeeEEecCCcce--------EeecCCcceEEEcCCCCE
Confidence 111112456799999999887642211100 000000010000000000000 000000 0000 001112
Q ss_pred EEEEcc-CCCceecCCC-------ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCC
Q 005240 159 LVLGSL-DGTAKDFGTP-------AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPA 230 (706)
Q Consensus 159 l~~~~l-~g~~~~lt~~-------~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~ 230 (706)
+++... .+....+... .....+.+++++..+++.... ..+++|++.++....+......
T Consensus 171 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~~~~~~~ 237 (355)
T d2bbkh_ 171 AKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYT-------------GKIHQIDLSSGDAKFLPAVEAL 237 (355)
T ss_dssp EEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTT-------------SEEEEEECTTSSCEECCCEESS
T ss_pred EEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCC-------------CeEEEEecCCCcEEEEeccCCc
Confidence 222111 1111111000 122334555555565554332 4788999887765554332221
Q ss_pred CCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCC
Q 005240 231 EDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDS 310 (706)
Q Consensus 231 ~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg 310 (706)
..........+.+...+++++|+.. +++....... .........|+++|. .+++.............++|||||
T Consensus 238 ~~~~~~~~~~p~~~~~~~~~~d~~~-~~~~~~~~~~--~~~~~~~~~v~v~d~---~t~~~~~~~~~~~~~~~~a~spDG 311 (355)
T d2bbkh_ 238 TEAERADGWRPGGWQQVAYHRALDR-IYLLVDQRDE--WRHKTASRFVVVLDA---KTGERLAKFEMGHEIDSINVSQDE 311 (355)
T ss_dssp CHHHHHTTEEECSSSCEEEETTTTE-EEEEEEECCT--TCTTSCEEEEEEEET---TTCCEEEEEEEEEEECEEEECCSS
T ss_pred ccceEeeeeeccceEEEEEeCCCCe-EEEEeccCCc--eeecCCCCeEEEEeC---CCCcEEEEecCCCCEEEEEEcCCC
Confidence 1100001111234456899999997 6655332211 111223346889988 556554433344557789999999
Q ss_pred ceEEEEeeccccceEEEEEcCCCC
Q 005240 311 LALVNETWYKTSQTRTWLVCPGSK 334 (706)
Q Consensus 311 ~~l~~~~~~~~~~~~l~~~d~~~~ 334 (706)
+.+++.+... ...|+++|+.++
T Consensus 312 ~~~l~v~~~~--d~~i~v~D~~tg 333 (355)
T d2bbkh_ 312 KPLLYALSTG--DKTLYIHDAESG 333 (355)
T ss_dssp SCEEEEEETT--TTEEEEEETTTC
T ss_pred CeEEEEEECC--CCEEEEEECCCC
Confidence 9766655333 346999999885
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.28 E-value=3.1e-10 Score=116.81 Aligned_cols=293 Identities=10% Similarity=0.075 Sum_probs=156.1
Q ss_pred CcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCc--------------cccccccceEEec
Q 005240 31 AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI--------------CLNAVFGSFVWVN 96 (706)
Q Consensus 31 ~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~--------------~~~~~~~~~~wSp 96 (706)
..+..++|||||++||... + ..|.++++.+++.......... .....+..++|||
T Consensus 63 ~~V~~l~fs~dg~~lasg~---------d--~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~ 131 (388)
T d1erja_ 63 SVVCCVKFSNDGEYLATGC---------N--KTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP 131 (388)
T ss_dssp SCCCEEEECTTSSEEEEEC---------B--SCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECT
T ss_pred CcEEEEEECCCCCEEEEEe---------C--CeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECC
Confidence 3588999999999987643 2 3567778777654322111100 0011256789999
Q ss_pred CCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCC-ceecCCC
Q 005240 97 NSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGTP 174 (706)
Q Consensus 97 Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~-~~~lt~~ 174 (706)
||++|+..+.+ +.|.+++. .++ ...+...
T Consensus 132 ~~~~l~s~~~d-------------------------------------------------g~v~i~~~~~~~~~~~~~~h 162 (388)
T d1erja_ 132 DGKFLATGAED-------------------------------------------------RLIRIWDIENRKIVMILQGH 162 (388)
T ss_dssp TSSEEEEEETT-------------------------------------------------SCEEEEETTTTEEEEEECCC
T ss_pred CCCcceecccc-------------------------------------------------cccccccccccccccccccc
Confidence 99998876421 45666676 443 2333323
Q ss_pred -ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeec-C
Q 005240 175 -AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRA-D 252 (706)
Q Consensus 175 -~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~sp-d 252 (706)
..+..+.|++++..++..+.. ..+.+|+..+........... ....+.+++ +
T Consensus 163 ~~~v~~~~~~~~~~~~~~~~~~-------------~~i~~~d~~~~~~~~~~~~~~-------------~~~~~~~~~~~ 216 (388)
T d1erja_ 163 EQDIYSLDYFPSGDKLVSGSGD-------------RTVRIWDLRTGQCSLTLSIED-------------GVTTVAVSPGD 216 (388)
T ss_dssp SSCEEEEEECTTSSEEEEEETT-------------SEEEEEETTTTEEEEEEECSS-------------CEEEEEECSTT
T ss_pred cccccccccccccccccccccc-------------eeeeeeecccccccccccccc-------------ccccccccCCC
Confidence 678899999999998766543 378999998765544332221 111334444 5
Q ss_pred CCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCce-EEe-------ecccccccceecCCCceEEEEeeccccce
Q 005240 253 KPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPE-ILH-------KLDLRFRSVSWCDDSLALVNETWYKTSQT 324 (706)
Q Consensus 253 g~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~-~l~-------~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 324 (706)
++. |+.. ..+ ..|.+++. ..+... .+. .....+..+.|+||++.|+..+.+ +
T Consensus 217 ~~~-l~~~-~~d-----------~~i~i~~~---~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d--~-- 276 (388)
T d1erja_ 217 GKY-IAAG-SLD-----------RAVRVWDS---ETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLD--R-- 276 (388)
T ss_dssp CCE-EEEE-ETT-----------SCEEEEET---TTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETT--S--
T ss_pred CCe-EEEE-cCC-----------CeEEEeec---ccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECC--C--
Confidence 553 4322 111 23666766 333322 221 234567788999999988876522 2
Q ss_pred EEEEEcCCCCCCCceeee--cCccc--ccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeee
Q 005240 325 RTWLVCPGSKDVAPRVLF--DRVFE--NVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLF 400 (706)
Q Consensus 325 ~l~~~d~~~~~~~~~~l~--~~~~~--~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~ 400 (706)
.|.++|+.+......... ..... ..........+.|+|+|++|+..... + .|..+
T Consensus 277 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~d----g-----------------~i~vw 335 (388)
T d1erja_ 277 SVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKD----R-----------------GVLFW 335 (388)
T ss_dssp EEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETT----S-----------------EEEEE
T ss_pred cEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCC----C-----------------EEEEE
Confidence 455566555321100000 00000 00001112347789999988765421 1 35567
Q ss_pred ecCCCceeeeecccchhhhhhhhhhccCCCceecccCCCEEEEEEecCCCCcEEEEEEC
Q 005240 401 DINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSW 459 (706)
Q Consensus 401 d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~p~~v~~~~~ 459 (706)
|+.+++....+..... .+..+ .-.....|+||++.|+.. +.+ ..|.+|++
T Consensus 336 d~~~~~~~~~l~~H~~----~V~~~-~~~~~~~~spd~~~l~s~-s~D---g~I~iW~~ 385 (388)
T d1erja_ 336 DKKSGNPLLMLQGHRN----SVISV-AVANGSSLGPEYNVFATG-SGD---CKARIWKY 385 (388)
T ss_dssp ETTTCCEEEEEECCSS----CEEEE-EECSSCTTCTTCEEEEEE-ETT---SEEEEEEE
T ss_pred ECCCCcEEEEEeCCCC----CEEEE-EEecCcccCCCCCEEEEE-eCC---CEEEEEee
Confidence 7777765444433211 11111 111234689999766644 333 35888875
|
| >d1q0ra_ c.69.1.28 (A:) Aclacinomycin methylesterase RdmC {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Aclacinomycin methylesterase RdmC domain: Aclacinomycin methylesterase RdmC species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.28 E-value=9e-11 Score=116.23 Aligned_cols=115 Identities=16% Similarity=0.085 Sum_probs=81.4
Q ss_pred CCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCC
Q 005240 491 DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEG 570 (706)
Q Consensus 491 dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g 570 (706)
+|.+|+...+-+++ .|.||++||.+... .. +...+...|++.||.|++++.+ |+|
T Consensus 8 g~~~i~y~~~G~~~--------~p~vvl~HG~~~~~-----------~~---~~~~~~~~l~~~g~~vi~~D~~---G~G 62 (297)
T d1q0ra_ 8 GDVELWSDDFGDPA--------DPALLLVMGGNLSA-----------LG---WPDEFARRLADGGLHVIRYDHR---DTG 62 (297)
T ss_dssp TTEEEEEEEESCTT--------SCEEEEECCTTCCG-----------GG---SCHHHHHHHHTTTCEEEEECCT---TST
T ss_pred CCEEEEEEEecCCC--------CCEEEEECCCCcCh-----------hH---HHHHHHHHHHhCCCEEEEEeCC---CCc
Confidence 67888877775432 36788999975310 11 1223466788899999996665 556
Q ss_pred CCCCc-----hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCC
Q 005240 571 DKLPN-----DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 636 (706)
Q Consensus 571 ~~~~~-----~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~ 636 (706)
++... .....+..+|+...++.+ +.+++.++|||+||.+++.++.++|++++++++.++.
T Consensus 63 ~S~~~~~~~~~~~~~~~~~d~~~ll~~l------~~~~~~lvGhS~Gg~~a~~~a~~~P~~v~~lvli~~~ 127 (297)
T d1q0ra_ 63 RSTTRDFAAHPYGFGELAADAVAVLDGW------GVDRAHVVGLSMGATITQVIALDHHDRLSSLTMLLGG 127 (297)
T ss_dssp TSCCCCTTTSCCCHHHHHHHHHHHHHHT------TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred ccccccccccccccchhhhhhccccccc------cccceeeccccccchhhhhhhcccccceeeeEEEccc
Confidence 55321 113555666776666544 4468999999999999999999999999999988765
|
| >d1k8qa_ c.69.1.6 (A:) Gastric lipase {Dog (Canis familiaris) [TaxId: 9615]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Gastric lipase domain: Gastric lipase species: Dog (Canis familiaris) [TaxId: 9615]
Probab=99.27 E-value=5.1e-11 Score=122.38 Aligned_cols=139 Identities=15% Similarity=0.046 Sum_probs=92.5
Q ss_pred CceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEE
Q 005240 480 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 559 (706)
Q Consensus 480 ~~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~ 559 (706)
...|...+++.||..|..+.+..........++.|+||++||-+.. ...|... ......+..|+++||.|+
T Consensus 25 y~~e~h~v~t~DG~~l~~~ri~~~~~~~~~~~~~~~vlllHG~~~~--------~~~~~~~-~~~~sla~~L~~~Gy~V~ 95 (377)
T d1k8qa_ 25 YPAEEYEVVTEDGYILGIDRIPYGRKNSENIGRRPVAFLQHGLLAS--------ATNWISN-LPNNSLAFILADAGYDVW 95 (377)
T ss_dssp CCCEEEEEECTTSEEEEEEEECSCSSCCTTTTTCCEEEEECCTTCC--------GGGGSSS-CTTTCHHHHHHHTTCEEE
T ss_pred CCceEEEEEcCCCCEEEEEEecCCCCCCccCCCCCeEEEECCCccc--------hhHHhhc-CccchHHHHHHHCCCEEE
Confidence 4568888999999888776553221112223346889999996422 1112111 112346788999999999
Q ss_pred EcCCCCcCCCCCCCC------------chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCce
Q 005240 560 AGPSIPIIGEGDKLP------------NDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLF 627 (706)
Q Consensus 560 ~~~~~~~~g~g~~~~------------~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~ 627 (706)
+.+.| |+|.+.. ...+-+....|+.++++++.++-- .++|.+.||||||.+++.++.++|+.+
T Consensus 96 ~~D~r---G~G~S~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~i~~i~~~~g--~~~v~lvGhS~GG~ia~~~a~~~p~~~ 170 (377)
T d1k8qa_ 96 LGNSR---GNTWARRNLYYSPDSVEFWAFSFDEMAKYDLPATIDFILKKTG--QDKLHYVGHSQGTTIGFIAFSTNPKLA 170 (377)
T ss_dssp ECCCT---TSTTSCEESSSCTTSTTTTCCCHHHHHHTHHHHHHHHHHHHHC--CSCEEEEEETHHHHHHHHHHHHCHHHH
T ss_pred EEcCC---CCCCCCCCCCCCCcchhhccCCHHHHhhhhHHHHHHHHHHHcC--CCCEEEEEecchHHHHHHHHHhhhhhh
Confidence 96665 4554422 112334457799999999987632 368999999999999999999998876
Q ss_pred eEEEe
Q 005240 628 CCGIA 632 (706)
Q Consensus 628 ~a~v~ 632 (706)
+.+++
T Consensus 171 ~~l~~ 175 (377)
T d1k8qa_ 171 KRIKT 175 (377)
T ss_dssp TTEEE
T ss_pred hhcee
Confidence 54443
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.26 E-value=1.8e-09 Score=106.51 Aligned_cols=281 Identities=10% Similarity=0.087 Sum_probs=154.2
Q ss_pred eeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEE
Q 005240 23 EVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLI 102 (706)
Q Consensus 23 ~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~ 102 (706)
.++++.. .+..++|||||+.||..+. + ..|.++|+++++..+...... ..+..+.|+|++..++
T Consensus 12 ~L~GH~~--~I~~l~~sp~~~~l~s~s~--------D--g~i~iWd~~~~~~~~~~~~h~----~~V~~~~~~~~~~~~~ 75 (317)
T d1vyhc1 12 ALSGHRS--PVTRVIFHPVFSVMVSASE--------D--ATIKVWDYETGDFERTLKGHT----DSVQDISFDHSGKLLA 75 (317)
T ss_dssp EEECCSS--CEEEEEECSSSSEEEEEES--------S--SCEEEEETTTCCCCEEECCCS----SCEEEEEECTTSSEEE
T ss_pred EEcCCCC--CeEEEEEcCCCCEEEEEeC--------C--CeEEEEECCCCCEEEEEeCCC----CcEEEEeeeccccccc
Confidence 3444333 4889999999999877542 3 457777888876554432221 1377899999999888
Q ss_pred EEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCCce-ecCCC-ceEee
Q 005240 103 FTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAK-DFGTP-AVYTA 179 (706)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~~-~lt~~-~~~~~ 179 (706)
..... ..+...+. ..+.. .+... .....
T Consensus 76 ~~~~~-------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (317)
T d1vyhc1 76 SCSAD-------------------------------------------------MTIKLWDFQGFECIRTMHGHDHNVSS 106 (317)
T ss_dssp EEETT-------------------------------------------------SCCCEEETTSSCEEECCCCCSSCEEE
T ss_pred ccccc-------------------------------------------------ccccccccccccccccccccccccee
Confidence 76432 11122222 12221 22222 46678
Q ss_pred eeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCee-EEcccCCCCCCCCcccCccCCCCcceeeecCCCceEE
Q 005240 180 VEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLY 258 (706)
Q Consensus 180 ~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~ 258 (706)
..++|+++.|+..... ..+.+|++.++.. ..+.... .....+.|+|+++. |+
T Consensus 107 ~~~~~~~~~~~~~~~d-------------~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~-l~ 159 (317)
T d1vyhc1 107 VSIMPNGDHIVSASRD-------------KTIKMWEVQTGYCVKTFTGHR-------------EWVRMVRPNQDGTL-IA 159 (317)
T ss_dssp EEECSSSSEEEEEETT-------------SEEEEEETTTCCEEEEEECCS-------------SCEEEEEECTTSSE-EE
T ss_pred eeccCCCceEEeeccC-------------cceeEeecccceeeeEEccCC-------------CcceeeecccCCCE-EE
Confidence 8899999998765543 3788999985543 3332221 11336789999885 44
Q ss_pred EEEeccCCCCccccCccceeeeecCCCCCCCCce-EEeecccccccceecCCCc--------------------eEEEEe
Q 005240 259 WVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPE-ILHKLDLRFRSVSWCDDSL--------------------ALVNET 317 (706)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~-~l~~~~~~~~~~~wspDg~--------------------~l~~~~ 317 (706)
... .+ ..+.+++. ..++.. .+......+..+.|+|++. .++..+
T Consensus 160 ~~~-~d-----------~~v~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (317)
T d1vyhc1 160 SCS-ND-----------QTVRVWVV---ATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS 224 (317)
T ss_dssp EEE-TT-----------SCEEEEET---TTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE
T ss_pred EEe-CC-----------CeEEEEee---ccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEecc
Confidence 221 11 13556665 333322 2333344455555665543 222222
Q ss_pred eccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCce
Q 005240 318 WYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFL 397 (706)
Q Consensus 318 ~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l 397 (706)
....|..+|+.++ ++...+...-.. ...+.++|+|++|+....+ + .|
T Consensus 225 ----~d~~i~~~~~~~~--~~~~~~~~~~~~------v~~~~~~~~~~~l~s~~~d----g-----------------~i 271 (317)
T d1vyhc1 225 ----RDKTIKMWDVSTG--MCLMTLVGHDNW------VRGVLFHSGGKFILSCADD----K-----------------TL 271 (317)
T ss_dssp ----TTSEEEEEETTTT--EEEEEEECCSSC------EEEEEECSSSSCEEEEETT----T-----------------EE
T ss_pred ----CCCEEEEEECCCC--cEEEEEeCCCCC------EEEEEECCCCCEEEEEECC----C-----------------eE
Confidence 1234666777663 222222211111 1236789999988765411 1 35
Q ss_pred eeeecCCCceeeeecccchhhhhhhhhhccCCCceecccCCCEEEEEEecCCCCcEEEEEE
Q 005240 398 DLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILS 458 (706)
Q Consensus 398 ~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~p~~v~~~~ 458 (706)
..+|+.+++....+.... ......+|+||++.|+....+. .|++||
T Consensus 272 ~iwd~~~~~~~~~~~~h~-----------~~V~~~~~s~~~~~l~s~s~Dg----~i~iWd 317 (317)
T d1vyhc1 272 RVWDYKNKRCMKTLNAHE-----------HFVTSLDFHKTAPYVVTGSVDQ----TVKVWE 317 (317)
T ss_dssp EEECCTTSCCCEEEECCS-----------SCEEEEEECSSSSCEEEEETTS----EEEEEC
T ss_pred EEEECCCCcEEEEEcCCC-----------CCEEEEEEcCCCCEEEEEeCCC----eEEEeC
Confidence 566777776544433221 1123468999998777543332 366664
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.25 E-value=2.8e-10 Score=119.47 Aligned_cols=168 Identities=11% Similarity=-0.050 Sum_probs=100.4
Q ss_pred cceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCC-c
Q 005240 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD-I 83 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~-~ 83 (706)
..|.|.|+++ ++.... ++.+..+..++|||||++||.+. + + ..+.++|+++++...+...+. .
T Consensus 42 g~v~v~D~~t----~~v~~~--~~~g~~~~~v~fSpDG~~l~~~s-~-------d--g~v~~~d~~t~~~~~~~~i~~~~ 105 (432)
T d1qksa2 42 GQIALIDGST----YEIKTV--LDTGYAVHISRLSASGRYLFVIG-R-------D--GKVNMIDLWMKEPTTVAEIKIGS 105 (432)
T ss_dssp TEEEEEETTT----CCEEEE--EECSSCEEEEEECTTSCEEEEEE-T-------T--SEEEEEETTSSSCCEEEEEECCS
T ss_pred CEEEEEECCC----CcEEEE--EeCCCCeeEEEECCCCCEEEEEc-C-------C--CCEEEEEeeCCCceEEEEEecCC
Confidence 4677888866 655443 45666688999999999996543 2 2 478888988876443321111 0
Q ss_pred cccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEc
Q 005240 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (706)
Q Consensus 84 ~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~ 163 (706)
.....+.++.|||||++|+.... ....+.++|
T Consensus 106 ~~~~~~~s~~~SpDG~~l~vs~~------------------------------------------------~~~~v~i~d 137 (432)
T d1qksa2 106 EARSIETSKMEGWEDKYAIAGAY------------------------------------------------WPPQYVIMD 137 (432)
T ss_dssp EEEEEEECCSTTCTTTEEEEEEE------------------------------------------------ETTEEEEEE
T ss_pred CCCCeEEecccCCCCCEEEEEcC------------------------------------------------CCCeEEEEe
Confidence 00111335677899999876532 114566677
Q ss_pred c-CCCceecCC-------------CceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCC
Q 005240 164 L-DGTAKDFGT-------------PAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPP 229 (706)
Q Consensus 164 l-~g~~~~lt~-------------~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 229 (706)
. ++++..... ......+.+||||++++++.... ..+.+++....+...+.....
T Consensus 138 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~------------~~i~~~d~~~~~~~~~~~i~~ 205 (432)
T d1qksa2 138 GETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKET------------GKILLVDYTDLNNLKTTEISA 205 (432)
T ss_dssp TTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTT------------TEEEEEETTCSSEEEEEEEEC
T ss_pred CccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccC------------CeEEEEEccCCCcceEEEEcc
Confidence 6 444332211 12345678899999887766542 478889887554333332211
Q ss_pred CCCCCcccCccCCCCcceeeecCCCceEEEE
Q 005240 230 AEDIPVCYNSVREGMRSISWRADKPSTLYWV 260 (706)
Q Consensus 230 ~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~ 260 (706)
. ..+..+.++|||+. ++..
T Consensus 206 g-----------~~~~~~~~spdg~~-~~va 224 (432)
T d1qksa2 206 E-----------RFLHDGGLDGSHRY-FITA 224 (432)
T ss_dssp C-----------SSEEEEEECTTSCE-EEEE
T ss_pred c-----------CccccceECCCCCE-EEEe
Confidence 1 12346789999986 5433
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.23 E-value=2.3e-09 Score=107.32 Aligned_cols=293 Identities=12% Similarity=-0.033 Sum_probs=159.0
Q ss_pred ccceeEeecCCCCCCCCeeeeecCC-CCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCC
Q 005240 4 FTGIGIHRLLPDDSLGPEKEVHGYP-DGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD 82 (706)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~i~~~~-~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~ 82 (706)
...|+|.|+.. ++......++ .+.....++|||||++|+.+. .....|+++|+++++...-.....
T Consensus 10 d~~v~v~D~~s----~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~---------~~~~~v~v~D~~t~~~~~~~~~~~ 76 (337)
T d1pbyb_ 10 PDKLVVIDTEK----MAVDKVITIADAGPTPMVPMVAPGGRIAYATV---------NKSESLVKIDLVTGETLGRIDLST 76 (337)
T ss_dssp TTEEEEEETTT----TEEEEEEECTTCTTCCCCEEECTTSSEEEEEE---------TTTTEEEEEETTTCCEEEEEECCB
T ss_pred CCEEEEEECCC----CeEEEEEECCCCCCCccEEEECCCCCEEEEEE---------CCCCeEEEEECCCCcEEEEEecCC
Confidence 36899999977 6544322233 344678999999999986543 334689999999987654322211
Q ss_pred c-cccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEE
Q 005240 83 I-CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (706)
Q Consensus 83 ~-~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~ 161 (706)
. ........++|||||+.++.......... .. .......+.+
T Consensus 77 ~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~-----------------------~~--------------~~~~~~~~~~ 119 (337)
T d1pbyb_ 77 PEERVKSLFGAALSPDGKTLAIYESPVRLEL-----------------------TH--------------FEVQPTRVAL 119 (337)
T ss_dssp TTEEEECTTCEEECTTSSEEEEEEEEEEECS-----------------------SC--------------EEECCCEEEE
T ss_pred CcccccceeeEEEcCCCcEEEEeecCCccee-----------------------ee--------------ccccccceee
Confidence 1 11112447899999999887643111000 00 0002256777
Q ss_pred Ecc-CCCc-eecCCCceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCc
Q 005240 162 GSL-DGTA-KDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNS 239 (706)
Q Consensus 162 ~~l-~g~~-~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~ 239 (706)
++. +++. +.+.....+..++|||||++++... .++.+|+..+.+............
T Consensus 120 ~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~---------------~~~~~~d~~~~~~~~~~~~~~~~~------- 177 (337)
T d1pbyb_ 120 YDAETLSRRKAFEAPRQITMLAWARDGSKLYGLG---------------RDLHVMDPEAGTLVEDKPIQSWEA------- 177 (337)
T ss_dssp EETTTTEEEEEEECCSSCCCEEECTTSSCEEEES---------------SSEEEEETTTTEEEEEECSTTTTT-------
T ss_pred ccccCCeEEEeccccCCceEEEEcCCCCEEEEEc---------------CCcceeeeecCcEEEEeecCCccc-------
Confidence 787 4533 3333335567889999999997653 145678887665443222211100
Q ss_pred cCCCCcceeeecCCCc-----------eEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEE--eeccccccccee
Q 005240 240 VREGMRSISWRADKPS-----------TLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEIL--HKLDLRFRSVSW 306 (706)
Q Consensus 240 ~~~g~~~~~~spdg~~-----------~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l--~~~~~~~~~~~w 306 (706)
...++|++.. .+....................+.+++. ..+..... ...........+
T Consensus 178 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 248 (337)
T d1pbyb_ 178 ------ETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDL---ETGEMAMREVRIMDVFYFSTAV 248 (337)
T ss_dssp ------TTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEET---TTCCEEEEEEEECSSCEEEEEE
T ss_pred ------cceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEc---CCCcEEEEEecCCCcceEEEEe
Confidence 1122222221 0001110000011111112234677777 45554433 334555667789
Q ss_pred cCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecC
Q 005240 307 CDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGR 386 (706)
Q Consensus 307 spDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~ 386 (706)
+|++..++... ..|.++|+.+++ .....+.. .....+++||||++|+.....
T Consensus 249 ~~~~~~~~~~~------~~i~v~d~~~~~--~~~~~~~~-------~~~~~~~~s~dG~~l~v~~~~------------- 300 (337)
T d1pbyb_ 249 NPAKTRAFGAY------NVLESFDLEKNA--SIKRVPLP-------HSYYSVNVSTDGSTVWLGGAL------------- 300 (337)
T ss_dssp CTTSSEEEEEE------SEEEEEETTTTE--EEEEEECS-------SCCCEEEECTTSCEEEEESBS-------------
T ss_pred cccceEEEEcc------ccEEEEECCCCc--EEEEEcCC-------CCEEEEEECCCCCEEEEEeCC-------------
Confidence 99998876542 358888988842 22221111 122347889999998875311
Q ss_pred CCCCCCCCCceeeeecCCCceeeeecc
Q 005240 387 GFTPEGNIPFLDLFDINTGSKERIWES 413 (706)
Q Consensus 387 g~~~~~~~~~l~~~d~~~g~~~~l~~~ 413 (706)
..|..+|+++++..+....
T Consensus 301 --------~~i~v~D~~t~~~v~~i~~ 319 (337)
T d1pbyb_ 301 --------GDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp --------SEEEEEETTTCCEEEEEEC
T ss_pred --------CcEEEEECCCCcEEEEEEC
Confidence 1366788888876544443
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.22 E-value=2.3e-10 Score=117.35 Aligned_cols=266 Identities=9% Similarity=-0.088 Sum_probs=141.2
Q ss_pred cceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCc-
Q 005240 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI- 83 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~- 83 (706)
..|++.|.+. ++...... .+ ....++|||||+.|++..........+.....|+++|+.+++..+....+..
T Consensus 46 ~~~~~~d~~~----~~~~~~~~--~~-~~~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~ 118 (368)
T d1mdah_ 46 TENWVSCAGC----GVTLGHSL--GA-FLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAP 118 (368)
T ss_dssp EEEEEEETTT----TEEEEEEE--EC-TTCEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSC
T ss_pred ceEEEEeCCC----CcEEEEEe--CC-CCCcceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccc
Confidence 3577777766 76666542 22 2447999999999999775211111112345699999998876553221110
Q ss_pred --cccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEE
Q 005240 84 --CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (706)
Q Consensus 84 --~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~ 161 (706)
........++|||||++|++.... .+.+++
T Consensus 119 ~~~~g~~p~~~a~SpDGk~l~va~~~------------------------------------------------~~~v~~ 150 (368)
T d1mdah_ 119 RFSVGPRVHIIGNCASSACLLFFLFG------------------------------------------------SSAAAG 150 (368)
T ss_dssp SCCBSCCTTSEEECTTSSCEEEEECS------------------------------------------------SSCEEE
T ss_pred eecccCCccceEECCCCCEEEEEeCC------------------------------------------------CCeEEE
Confidence 001113478999999998876321 134555
Q ss_pred Ecc-CCCc-eecCCC--------ceEeeeeeCCCCcEEEEEeeccCccc--------ccc-----------c----cccc
Q 005240 162 GSL-DGTA-KDFGTP--------AVYTAVEPSPDQKYVLITSMHRPYSY--------KVP-----------C----ARFS 208 (706)
Q Consensus 162 ~~l-~g~~-~~lt~~--------~~~~~~~~SpDG~~i~~~~~~~~~~~--------~~~-----------~----~~~~ 208 (706)
+|+ +++. +.+... +....+.+++||+.+++......... ... . ....
T Consensus 151 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 230 (368)
T d1mdah_ 151 LSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVA 230 (368)
T ss_dssp EEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBS
T ss_pred EECCCCcEeEEeeccCcceEccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEecC
Confidence 555 3322 111111 11233556677766655433221100 000 0 0012
Q ss_pred ceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCC
Q 005240 209 QKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEG 288 (706)
Q Consensus 209 ~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 288 (706)
.+++++++.+.....+................+.+...++++|++.. +++.. ...... .......|+++|. .+
T Consensus 231 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~-~~v~~-~~~~~~--~~~~~~~v~v~D~---~t 303 (368)
T d1mdah_ 231 SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDG-IMILT-VEHSRS--CLAAAENTSSVTA---SV 303 (368)
T ss_dssp SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTE-EEEEE-EECSSC--TTSCEEEEEEEES---SS
T ss_pred CCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCE-EEEEe-cCCCce--eecCCceEEEEEC---CC
Confidence 35667777665555443332211100000011133446789999986 55443 222211 1122346889998 66
Q ss_pred CCceEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCCC
Q 005240 289 EKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK 334 (706)
Q Consensus 289 ~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~ 334 (706)
++.............+.|||||+.++|.+... ...|+++|+.++
T Consensus 304 ~~~~~~~~~~~~~~~~a~spDG~~~ly~s~~~--~~~v~v~D~~tg 347 (368)
T d1mdah_ 304 GQTSGPISNGHDSDAIIAAQDGASDNYANSAG--TEVLDIYDAASD 347 (368)
T ss_dssp CCEEECCEEEEEECEEEECCSSSCEEEEEETT--TTEEEEEESSSC
T ss_pred CcEeEEecCCCceeEEEECCCCCEEEEEEeCC--CCeEEEEECCCC
Confidence 65443333445677899999999776665433 346999999885
|
| >d1a88a_ c.69.1.12 (A:) Chloroperoxidase L {Streptomyces lividans [TaxId: 1916]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Chloroperoxidase L species: Streptomyces lividans [TaxId: 1916]
Probab=99.20 E-value=2.6e-10 Score=111.20 Aligned_cols=119 Identities=16% Similarity=0.171 Sum_probs=83.6
Q ss_pred EEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCC
Q 005240 486 KYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIP 565 (706)
Q Consensus 486 ~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~ 565 (706)
++++.||..|+...+-|++ -|.||++||.+.. ...| ...+..|++.||.|++.+.+
T Consensus 2 ~i~~~dG~~l~y~~~G~~~--------~~~vv~lHG~~~~-----------~~~~----~~~~~~l~~~g~~vi~~D~~- 57 (275)
T d1a88a_ 2 TVTTSDGTNIFYKDWGPRD--------GLPVVFHHGWPLS-----------ADDW----DNQMLFFLSHGYRVIAHDRR- 57 (275)
T ss_dssp EEECTTSCEEEEEEESCTT--------SCEEEEECCTTCC-----------GGGG----HHHHHHHHHTTCEEEEECCT-
T ss_pred EEEecCCCEEEEEEecCCC--------CCeEEEECCCCCC-----------HHHH----HHHHHHHHhCCCEEEEEecc-
Confidence 4677899999999997754 2467889996421 1111 23466788999999996665
Q ss_pred cCCCCCCCC--chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEech-HHHHHHHHHHhCCCceeEEEeccCC
Q 005240 566 IIGEGDKLP--NDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSY-GAFMTAHLLAHAPHLFCCGIARSGS 636 (706)
Q Consensus 566 ~~g~g~~~~--~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~-GG~~a~~~~~~~p~~~~a~v~~~~~ 636 (706)
|+|.+.. .....+...+|+.+.++.+ +.+++.++|+|+ ||.+++.++.++|++++.++..++.
T Consensus 58 --G~G~s~~~~~~~~~~~~~~~~~~~l~~l------~~~~~~~vg~s~~G~~~~~~~a~~~p~~v~~lvl~~~~ 123 (275)
T d1a88a_ 58 --GHGRSDQPSTGHDMDTYAADVAALTEAL------DLRGAVHIGHSTGGGEVARYVARAEPGRVAKAVLVSAV 123 (275)
T ss_dssp --TSTTSCCCSSCCSHHHHHHHHHHHHHHH------TCCSEEEEEETHHHHHHHHHHHHSCTTSEEEEEEESCC
T ss_pred --cccccccccccccccccccccccccccc------cccccccccccccccchhhcccccCcchhhhhhhhccc
Confidence 4554433 2223556677888877765 346788888886 6666777888999999999988764
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.18 E-value=6.4e-09 Score=106.20 Aligned_cols=94 Identities=14% Similarity=-0.097 Sum_probs=57.1
Q ss_pred cceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCcc
Q 005240 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~ 84 (706)
..|++.|.+. |+.... ++.+ ....+.|||||++|+++...............|+++|+.+++.......+...
T Consensus 47 ~~v~v~D~~t----g~~~~~--~~~~-~~~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~ 119 (373)
T d2madh_ 47 IQQWVLDAGS----GSILGH--VNGG-FLPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAP 119 (373)
T ss_pred ceEEEEECCC----CCEEEE--EeCC-CCccEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcc
Confidence 4578888766 655442 3444 24479999999999987642111111123357899999998876544322211
Q ss_pred c---cccccceEEecCCcEEEEEe
Q 005240 85 L---NAVFGSFVWVNNSTLLIFTI 105 (706)
Q Consensus 85 ~---~~~~~~~~wSpDg~~l~~~~ 105 (706)
. ......+.|+|||+.+++..
T Consensus 120 ~~~~~~~~~~~~~s~dg~~~~v~~ 143 (373)
T d2madh_ 120 RFDVGPYSWMNANTPNNADLLFFQ 143 (373)
T ss_pred eeEeccCCCcEEEEeCCCcEEEEE
Confidence 0 11124578999999877654
|
| >d1auoa_ c.69.1.14 (A:) Carboxylesterase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Carboxylesterase species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.18 E-value=1e-09 Score=103.28 Aligned_cols=94 Identities=22% Similarity=0.124 Sum_probs=72.6
Q ss_pred CCCCCCcEEEEEechHHHHHHHHHH-hCCCceeEEEeccCCCCCCC-----------CCcc------------chHHHHH
Q 005240 597 GVADPSRIAVGGHSYGAFMTAHLLA-HAPHLFCCGIARSGSYNKTL-----------TPFG------------FQAERFF 652 (706)
Q Consensus 597 ~~id~~~i~i~G~S~GG~~a~~~~~-~~p~~~~a~v~~~~~~d~~~-----------~~~~------------~~~~~~~ 652 (706)
..+|++||+++|+|+||++++.++. +.+..++++++.+|...... .|.. -..++++
T Consensus 101 ~~i~~~ri~l~GfSqGg~~a~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~pvl~~hG~~D~vvp~~~~~~~~ 180 (218)
T d1auoa_ 101 TGIDASRIFLAGFSQGGAVVFHTAFINWQGPLGGVIALSTYAPTFGDELELSASQQRIPALCLHGQYDDVVQNAMGRSAF 180 (218)
T ss_dssp TTCCGGGEEEEEETHHHHHHHHHHHTTCCSCCCEEEEESCCCTTCCTTCCCCHHHHTCCEEEEEETTCSSSCHHHHHHHH
T ss_pred hCCCCcceEEeeeCcchHHHHHHHHhcccccceeeeeccccCcccccccccchhccCCCEEEEecCCCCccCHHHHHHHH
Confidence 4489999999999999999998875 45678999999987543211 1110 1234999
Q ss_pred HHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHHHhc
Q 005240 653 DALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQKYCL 696 (706)
Q Consensus 653 ~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~~~~l~ 696 (706)
+.|++.|.+++++.|| .+|.++ .+.++.+.+||.+.|.
T Consensus 181 ~~L~~~g~~~~~~~~~-~gH~i~-----~~~~~~i~~wl~~~lg 218 (218)
T d1auoa_ 181 EHLKSRGVTVTWQEYP-MGHEVL-----PQEIHDIGAWLAARLG 218 (218)
T ss_dssp HHHHTTTCCEEEEEES-CSSSCC-----HHHHHHHHHHHHHHHC
T ss_pred HHHHHCCCCEEEEEEC-CCCccC-----HHHHHHHHHHHHHhcC
Confidence 9999999999999998 589876 2567899999998773
|
| >d1a8qa_ c.69.1.12 (A:) Bromoperoxidase A1 {Streptomyces aureofaciens [TaxId: 1894]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Bromoperoxidase A1 species: Streptomyces aureofaciens [TaxId: 1894]
Probab=99.18 E-value=2.9e-10 Score=110.79 Aligned_cols=116 Identities=13% Similarity=0.174 Sum_probs=76.6
Q ss_pred EEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCc
Q 005240 487 YQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPI 566 (706)
Q Consensus 487 ~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~ 566 (706)
+++.||..|+.... +. + |.||++||.+.. ...| ...+..|+++||.|++.+.+
T Consensus 3 ~~t~dG~~l~y~~~-------G~-g--~~ivlvHG~~~~-----------~~~~----~~~~~~l~~~g~~vi~~D~~-- 55 (274)
T d1a8qa_ 3 CTTRDGVEIFYKDW-------GQ-G--RPVVFIHGWPLN-----------GDAW----QDQLKAVVDAGYRGIAHDRR-- 55 (274)
T ss_dssp EECTTSCEEEEEEE-------CS-S--SEEEEECCTTCC-----------GGGG----HHHHHHHHHTTCEEEEECCT--
T ss_pred EECcCCCEEEEEEE-------CC-C--CeEEEECCCCCC-----------HHHH----HHHHHHHHHCCCEEEEEeCC--
Confidence 56779988885544 11 1 357789996421 0111 23456688899999996665
Q ss_pred CCCCCCCCc--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHH-hCCCceeEEEeccCC
Q 005240 567 IGEGDKLPN--DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLA-HAPHLFCCGIARSGS 636 (706)
Q Consensus 567 ~g~g~~~~~--~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~-~~p~~~~a~v~~~~~ 636 (706)
|+|.+... .........|+.+.++.+ ..+++.++|||+||.+++.+++ +.|+++++++..++.
T Consensus 56 -G~G~S~~~~~~~~~~~~~~dl~~~l~~l------~~~~~~lvGhS~Gg~~~~~~~a~~~p~~v~~~~~~~~~ 121 (274)
T d1a8qa_ 56 -GHGHSTPVWDGYDFDTFADDLNDLLTDL------DLRDVTLVAHSMGGGELARYVGRHGTGRLRSAVLLSAI 121 (274)
T ss_dssp -TSTTSCCCSSCCSHHHHHHHHHHHHHHT------TCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCC
T ss_pred -CCcccccccccccchhhHHHHHHHHHHh------hhhhhcccccccccchHHHHHHHhhhccceeEEEEecc
Confidence 44544332 233455566766665544 3468999999999998887654 568999998888764
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.18 E-value=4.2e-09 Score=105.35 Aligned_cols=277 Identities=12% Similarity=0.043 Sum_probs=147.5
Q ss_pred ceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchh
Q 005240 61 KLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDN 140 (706)
Q Consensus 61 ~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (706)
..+|.++|+++++.......+.. ...+..+++||||++|+....
T Consensus 10 d~~v~v~D~~s~~~~~~i~~~~~--~~~~~~i~~spDg~~l~v~~~---------------------------------- 53 (337)
T d1pbyb_ 10 PDKLVVIDTEKMAVDKVITIADA--GPTPMVPMVAPGGRIAYATVN---------------------------------- 53 (337)
T ss_dssp TTEEEEEETTTTEEEEEEECTTC--TTCCCCEEECTTSSEEEEEET----------------------------------
T ss_pred CCEEEEEECCCCeEEEEEECCCC--CCCccEEEECCCCCEEEEEEC----------------------------------
Confidence 36899999999886553322211 112568999999998876532
Q ss_pred ccCCchhhhhhhhcccceEEEEcc-CCCce-ecCCC------ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEE
Q 005240 141 LLKDEYDESLFDYYTTAQLVLGSL-DGTAK-DFGTP------AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQ 212 (706)
Q Consensus 141 ~~~~~~d~~~~~~~~~~~l~~~~l-~g~~~-~lt~~------~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~ 212 (706)
..+.|+++|+ +|+.. .+... .....++|||||++++........... ........+.
T Consensus 54 --------------~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~-~~~~~~~~~~ 118 (337)
T d1pbyb_ 54 --------------KSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELT-HFEVQPTRVA 118 (337)
T ss_dssp --------------TTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSS-CEEECCCEEE
T ss_pred --------------CCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceee-ecccccccee
Confidence 1157888898 56432 33222 123478999999999877654321100 0011135788
Q ss_pred EEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCce
Q 005240 213 VWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPE 292 (706)
Q Consensus 213 ~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 292 (706)
+++..+++........ ..+..+.|+|||+. ++... + .+.++|. .+++..
T Consensus 119 ~~d~~~~~~~~~~~~~-------------~~~~~~~~s~dg~~-l~~~~----~----------~~~~~d~---~~~~~~ 167 (337)
T d1pbyb_ 119 LYDAETLSRRKAFEAP-------------RQITMLAWARDGSK-LYGLG----R----------DLHVMDP---EAGTLV 167 (337)
T ss_dssp EEETTTTEEEEEEECC-------------SSCCCEEECTTSSC-EEEES----S----------SEEEEET---TTTEEE
T ss_pred eccccCCeEEEecccc-------------CCceEEEEcCCCCE-EEEEc----C----------Ccceeee---ecCcEE
Confidence 8998877655433322 12346799999997 65331 1 1334555 333333
Q ss_pred EEeecccccccceecCCCceEEEEeec--------------------cccceEEEEEcCCCCCCCceeeecCcccccccC
Q 005240 293 ILHKLDLRFRSVSWCDDSLALVNETWY--------------------KTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSD 352 (706)
Q Consensus 293 ~l~~~~~~~~~~~wspDg~~l~~~~~~--------------------~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~ 352 (706)
.............++|++..+...... ......++.++..++...........
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 240 (337)
T d1pbyb_ 168 EDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMD------- 240 (337)
T ss_dssp EEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECS-------
T ss_pred EEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCC-------
Confidence 222222223333444444332211000 01223456666655321111111000
Q ss_pred CCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeeecccchhhhhhhhhhccCCCce
Q 005240 353 PGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEE 432 (706)
Q Consensus 353 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~ 432 (706)
...+...+++++.+++... ..+..+|+++++......... ....+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~-----------------------~~i~v~d~~~~~~~~~~~~~~------------~~~~~ 285 (337)
T d1pbyb_ 241 VFYFSTAVNPAKTRAFGAY-----------------------NVLESFDLEKNASIKRVPLPH------------SYYSV 285 (337)
T ss_dssp SCEEEEEECTTSSEEEEEE-----------------------SEEEEEETTTTEEEEEEECSS------------CCCEE
T ss_pred cceEEEEecccceEEEEcc-----------------------ccEEEEECCCCcEEEEEcCCC------------CEEEE
Confidence 0112244577777665432 136678888887554443321 12357
Q ss_pred ecccCCCEEEEEEecCCCCcEEEEEECCCCcee
Q 005240 433 DINLNQLKILTSKESKTEITQYHILSWPLKKSS 465 (706)
Q Consensus 433 ~~s~Dg~~l~~~~~~~~~p~~v~~~~~~~~~~~ 465 (706)
.|||||++|+... . -..|.+||+++++..
T Consensus 286 ~~s~dG~~l~v~~-~---~~~i~v~D~~t~~~v 314 (337)
T d1pbyb_ 286 NVSTDGSTVWLGG-A---LGDLAAYDAETLEKK 314 (337)
T ss_dssp EECTTSCEEEEES-B---SSEEEEEETTTCCEE
T ss_pred EECCCCCEEEEEe-C---CCcEEEEECCCCcEE
Confidence 8999999776542 2 245999999887544
|
| >d1zd3a2 c.69.1.11 (A:225-547) Mammalian epoxide hydrolase, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Epoxide hydrolase domain: Mammalian epoxide hydrolase, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.15 E-value=3.6e-10 Score=113.17 Aligned_cols=120 Identities=13% Similarity=0.092 Sum_probs=81.6
Q ss_pred CceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEE
Q 005240 480 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 559 (706)
Q Consensus 480 ~~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~ 559 (706)
+....+ +..||..|+..-. +. -|+||++||.+... ..| ...+..|+++||.|+
T Consensus 11 ~~~~~v--~~~~g~~i~y~~~-------G~---gp~vlllHG~~~~~-----------~~~----~~~~~~L~~~g~~vi 63 (322)
T d1zd3a2 11 MSHGYV--TVKPRVRLHFVEL-------GS---GPAVCLCHGFPESW-----------YSW----RYQIPALAQAGYRVL 63 (322)
T ss_dssp SEEEEE--EEETTEEEEEEEE-------CC---SSEEEEECCTTCCG-----------GGG----TTHHHHHHHTTCEEE
T ss_pred CceeEE--EECCCCEEEEEEE-------cC---CCeEEEECCCCCCH-----------HHH----HHHHHHHHHCCCEEE
Confidence 344444 4448988886544 12 26788999965321 112 235678889999999
Q ss_pred EcCCCCcCCCCCCCCch----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccC
Q 005240 560 AGPSIPIIGEGDKLPND----RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSG 635 (706)
Q Consensus 560 ~~~~~~~~g~g~~~~~~----~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~ 635 (706)
+++.+ |+|.+.... ........|+.+.++.+ +.+++.++||||||.+++.++.++|+++++++..++
T Consensus 64 ~~D~~---G~G~S~~~~~~~~~~~~~~~~~i~~l~~~l------~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~ 134 (322)
T d1zd3a2 64 AMDMK---GYGESSAPPEIEEYCMEVLCKEMVTFLDKL------GLSQAVFIGHDWGGMLVWYMALFYPERVRAVASLNT 134 (322)
T ss_dssp EEECT---TSTTSCCCSCGGGGSHHHHHHHHHHHHHHH------TCSCEEEEEETHHHHHHHHHHHHCTTTEEEEEEESC
T ss_pred Eeccc---cccccccccccccccccccchhhhhhhhcc------cccccccccccchHHHHHHHHHhCCccccceEEEcc
Confidence 86665 556554321 12345555655655543 346899999999999999999999999999998764
|
| >d1tqha_ c.69.1.29 (A:) Carboxylesterase Est {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/lipase domain: Carboxylesterase Est species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.15 E-value=2e-10 Score=108.92 Aligned_cols=140 Identities=13% Similarity=0.110 Sum_probs=90.7
Q ss_pred hHHHHHHHCCeEEEEcCCCCcCCCCCCCCc--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhC
Q 005240 546 TSSLIFLARRFAVLAGPSIPIIGEGDKLPN--DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHA 623 (706)
Q Consensus 546 ~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~--~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~ 623 (706)
..++.|+++||.|++.+.+ |+|.+... .........++..++.++... +.+++.++|||+||.+++.++.++
T Consensus 29 ~l~~~L~~~G~~v~~~D~~---G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~G~S~Gg~~~~~~~~~~ 102 (242)
T d1tqha_ 29 MLGRFLESKGYTCHAPIYK---GHGVPPEELVHTGPDDWWQDVMNGYEFLKNK---GYEKIAVAGLSLGGVFSLKLGYTV 102 (242)
T ss_dssp HHHHHHHHTTCEEEECCCT---TSSSCHHHHTTCCHHHHHHHHHHHHHHHHHH---TCCCEEEEEETHHHHHHHHHHTTS
T ss_pred HHHHHHHHCCCEEEEEeCC---CCccccccccccchhHHHHHHHHHHhhhhhc---ccCceEEEEcchHHHHhhhhcccC
Confidence 4567889999999996665 55654321 122334455666666666554 347899999999999999999999
Q ss_pred CCceeEEEeccCCCCCCCC---------------------------------Cccc------------------------
Q 005240 624 PHLFCCGIARSGSYNKTLT---------------------------------PFGF------------------------ 646 (706)
Q Consensus 624 p~~~~a~v~~~~~~d~~~~---------------------------------~~~~------------------------ 646 (706)
|.....+++.+........ ....
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~li 182 (242)
T d1tqha_ 103 PIEGIVTMCAPMYIKSEETMYEGVLEYAREYKKREGKSEEQIEQEMEKFKQTPMKTLKALQELIADVRDHLDLIYAPTFV 182 (242)
T ss_dssp CCSCEEEESCCSSCCCHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHTGGGCCSCEEE
T ss_pred cccccccccccccccchhHHHHHHHHHHHHHhhhccchhhhHHHHHhhhhhhccchhhcccccccccccccceeccccce
Confidence 8765544433222111000 0000
Q ss_pred ------------hHHHHHHHHHhCCCcEEEEEeCCCCccCCCcccHHHHHHHHHHHHHH
Q 005240 647 ------------QAERFFDALKGHGALSRLVLLPFEHHVYAARENVMHVIWETDRWLQK 693 (706)
Q Consensus 647 ------------~~~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~f~~~ 693 (706)
..+++++.+. +..++++++|+++|.......+.++.+.+.+||++
T Consensus 183 i~g~~D~~~~~~~~~~~~~~~~--~~~~~~~~~~~~gH~~~~~~~~~~~~~~i~~Fl~~ 239 (242)
T d1tqha_ 183 VQARHDEMINPDSANIIYNEIE--SPVKQIKWYEQSGHVITLDQEKDQLHEDIYAFLES 239 (242)
T ss_dssp EEETTCSSSCTTHHHHHHHHCC--CSSEEEEEETTCCSSGGGSTTHHHHHHHHHHHHHH
T ss_pred eecccCCccCHHHHHHHHHHcC--CCCcEEEEECCCCCcCccccCHHHHHHHHHHHHHh
Confidence 0013433332 34589999999999877555678899999999987
|
| >d1c4xa_ c.69.1.10 (A:) 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) {Rhodococcus sp., strain rha1 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carbon-carbon bond hydrolase domain: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) species: Rhodococcus sp., strain rha1 [TaxId: 1831]
Probab=99.14 E-value=7.2e-10 Score=108.65 Aligned_cols=125 Identities=17% Similarity=0.101 Sum_probs=78.5
Q ss_pred ceEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEE
Q 005240 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 560 (706)
Q Consensus 481 ~~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~ 560 (706)
+.-+.++++ ++.+++....-+++ -|+||++||.+.. ...+..+ ...+..| +.||.|++
T Consensus 3 ~~~~~~~~~-~~~~~h~~~~G~~~--------~p~ivllHG~~~~-----------~~~~~~~-~~~~~~L-~~~~~vi~ 60 (281)
T d1c4xa_ 3 EIIEKRFPS-GTLASHALVAGDPQ--------SPAVVLLHGAGPG-----------AHAASNW-RPIIPDL-AENFFVVA 60 (281)
T ss_dssp CCEEEEECC-TTSCEEEEEESCTT--------SCEEEEECCCSTT-----------CCHHHHH-GGGHHHH-HTTSEEEE
T ss_pred EEEEEEEcc-CCEEEEEEEEecCC--------CCEEEEECCCCCC-----------CcHHHHH-HHHHHHH-hCCCEEEE
Confidence 334455554 56788877765543 3789999995311 0010000 1223344 46999998
Q ss_pred cCCCCcCCCCCCCCc-------hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEec
Q 005240 561 GPSIPIIGEGDKLPN-------DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIAR 633 (706)
Q Consensus 561 ~~~~~~~g~g~~~~~-------~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~ 633 (706)
.+.+ |+|.+... .......++|+.+.++.+ ..+++.++||||||.+++.++.++|++++++++.
T Consensus 61 ~D~~---G~G~S~~~~~~~~~~~~~~~~~~~~i~~~i~~~------~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvli 131 (281)
T d1c4xa_ 61 PDLI---GFGQSEYPETYPGHIMSWVGMRVEQILGLMNHF------GIEKSHIVGNSMGGAVTLQLVVEAPERFDKVALM 131 (281)
T ss_dssp ECCT---TSTTSCCCSSCCSSHHHHHHHHHHHHHHHHHHH------TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEE
T ss_pred EeCC---CCccccccccccccchhhHHHhhhhcccccccc------ccccceeccccccccccccccccccccccceEEe
Confidence 6665 55555321 122334455555544433 2368999999999999999999999999999988
Q ss_pred cCC
Q 005240 634 SGS 636 (706)
Q Consensus 634 ~~~ 636 (706)
++.
T Consensus 132 ~~~ 134 (281)
T d1c4xa_ 132 GSV 134 (281)
T ss_dssp SCC
T ss_pred ccc
Confidence 875
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.13 E-value=1.3e-09 Score=109.61 Aligned_cols=291 Identities=10% Similarity=-0.046 Sum_probs=155.1
Q ss_pred ccceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCc
Q 005240 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (706)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~ 83 (706)
...|.|.|+.+ ++......++.+.....++|||||++|+.+. .....|+++|+++++..........
T Consensus 17 ~~~v~v~D~~t----~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~---------~~~~~v~~~d~~t~~~~~~~~~~~~ 83 (346)
T d1jmxb_ 17 PNNLHVVDVAS----DTVYKSCVMPDKFGPGTAMMAPDNRTAYVLN---------NHYGDIYGIDLDTCKNTFHANLSSV 83 (346)
T ss_dssp TTEEEEEETTT----TEEEEEEECSSCCSSCEEEECTTSSEEEEEE---------TTTTEEEEEETTTTEEEEEEESCCS
T ss_pred CCEEEEEECCC----CCEEEEEEcCCCCCcceEEECCCCCEEEEEE---------CCCCcEEEEeCccCeeeeeeccccc
Confidence 35799999977 7654433356565678999999999996543 3346899999998876543221111
Q ss_pred --cccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEE
Q 005240 84 --CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (706)
Q Consensus 84 --~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~ 161 (706)
.....+..+++||||++|++......... ..+ ......+.+
T Consensus 84 ~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~-----------------------~~~--------------~~~~~~i~~ 126 (346)
T d1jmxb_ 84 PGEVGRSMYSFAISPDGKEVYATVNPTQRLN-----------------------DHY--------------VVKPPRLEV 126 (346)
T ss_dssp TTEEEECSSCEEECTTSSEEEEEEEEEEECS-----------------------SCE--------------EECCCEEEE
T ss_pred ccccCCceEEEEEecCCCEEEEEecCCccee-----------------------eee--------------ccCcceEEE
Confidence 11112457899999999887642110000 000 002245666
Q ss_pred Ecc-CCC-ceecC---CCceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeE-EcccCCCCCCCCc
Q 005240 162 GSL-DGT-AKDFG---TPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR-ELCDLPPAEDIPV 235 (706)
Q Consensus 162 ~~l-~g~-~~~lt---~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~~~~~p~ 235 (706)
++. +++ ...+. .+.......+++|++.++. . .++.+|++.+.+.. .+.....
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---------------~~~~~~~~~~~~~~~~~~~~~~------ 184 (346)
T d1jmxb_ 127 FSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVA-G---------------PDIYKMDVKTGKYTVALPLRNW------ 184 (346)
T ss_dssp EEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEE-S---------------SSEEEECTTTCCEEEEECSTTC------
T ss_pred EecccceeeeEEEeeeccCceEEEEecCCCEEEEe-C---------------CcceEEEccCCCEEEEEecCCC------
Confidence 666 442 22221 1123345567777765432 1 25677887755433 3322211
Q ss_pred ccCccCCCCcceeeecCCCceEEEEEe------------ccCCCC--ccccCccceeeeecCCCCCCCCceEE--eeccc
Q 005240 236 CYNSVREGMRSISWRADKPSTLYWVEA------------QDRGDA--NVEVSPRDIIYTQPAEPAEGEKPEIL--HKLDL 299 (706)
Q Consensus 236 ~~~~~~~g~~~~~~spdg~~~l~~~~~------------~~~~~~--~~~~~~~~~l~~~d~~~~~~~~~~~l--~~~~~ 299 (706)
.+...++|++.. ++.... ...... .........+.+++. ..+..... .....
T Consensus 185 --------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 252 (346)
T d1jmxb_ 185 --------NRKGYSAPDVLY-FWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDL---KTGKTHTQEFADLTE 252 (346)
T ss_dssp --------CCTTBCCCBCCC-CCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEET---TTCCEEEEEEEECSS
T ss_pred --------ccceEEeccccE-EEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEEC---CCCceEEEEeecccc
Confidence 223345555543 211100 000000 000111234667777 45544332 34455
Q ss_pred ccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEeeeccCCcce
Q 005240 300 RFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQI 379 (706)
Q Consensus 300 ~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~ 379 (706)
......+++++..+++... ..|..+|+.++ +.....+.. .....+++||||++|+.....
T Consensus 253 ~~~~~~~~~~~~~~~~~~~-----~~v~v~d~~~~--~~~~~~~~~-------~~~~~va~s~DG~~l~v~~~d------ 312 (346)
T d1jmxb_ 253 LYFTGLRSPKDPNQIYGVL-----NRLAKYDLKQR--KLIKAANLD-------HTYYCVAFDKKGDKLYLGGTF------ 312 (346)
T ss_dssp CEEEEEECSSCTTEEEEEE-----SEEEEEETTTT--EEEEEEECS-------SCCCEEEECSSSSCEEEESBS------
T ss_pred eeEEEEEeCCCCEEEEecC-----CeEEEEECCCC--cEEEEEcCC-------CCEEEEEEcCCCCEEEEEeCC------
Confidence 6677889999888876541 24888898874 222222111 122347889999999876421
Q ss_pred EEEEecCCCCCCCCCCceeeeecCCCceeeeecc
Q 005240 380 YILLNGRGFTPEGNIPFLDLFDINTGSKERIWES 413 (706)
Q Consensus 380 ~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~ 413 (706)
..|..+|+++++..+-+..
T Consensus 313 ---------------~~v~v~D~~t~~~i~~i~~ 331 (346)
T d1jmxb_ 313 ---------------NDLAVFNPDTLEKVKNIKL 331 (346)
T ss_dssp ---------------SEEEEEETTTTEEEEEEEC
T ss_pred ---------------CcEEEEECccCCEEEEEEC
Confidence 1366788888876544443
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.11 E-value=1.5e-08 Score=101.47 Aligned_cols=117 Identities=10% Similarity=0.000 Sum_probs=66.9
Q ss_pred ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCe-eEEcccCCCCCCCCcccCccCCCCcceeeecCC
Q 005240 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL-VRELCDLPPAEDIPVCYNSVREGMRSISWRADK 253 (706)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg 253 (706)
+.+..++|+|||++|+..+.... ..+.+|+.+.++ ...+.... ..+..+.|+|++
T Consensus 116 ~~v~~v~~s~~~~~l~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~h~-------------~~v~~~~~~~~~ 171 (325)
T d1pgua1 116 GPISDISWDFEGRRLCVVGEGRD-----------NFGVFISWDSGNSLGEVSGHS-------------QRINACHLKQSR 171 (325)
T ss_dssp SCEEEEEECTTSSEEEEEECCSS-----------CSEEEEETTTCCEEEECCSCS-------------SCEEEEEECSSS
T ss_pred CcEEEEEECCCCCccceeecccc-----------ceEEEEeecccccceeeeecc-------------cccccccccccc
Confidence 46778999999999987765432 356777777443 34443221 123467899999
Q ss_pred CceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceE-Ee---ecccccccceecCCC-ceEEEEeeccccceEEEE
Q 005240 254 PSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEI-LH---KLDLRFRSVSWCDDS-LALVNETWYKTSQTRTWL 328 (706)
Q Consensus 254 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~-l~---~~~~~~~~~~wspDg-~~l~~~~~~~~~~~~l~~ 328 (706)
+. ++.....+ ..+.+++. ...+... +. .....+..+.|+||+ ..|+... .+ + .|.+
T Consensus 172 ~~-~~~~~~~d-----------~~v~~~d~---~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~-~d-~--~i~i 232 (325)
T d1pgua1 172 PM-RSMTVGDD-----------GSVVFYQG---PPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVG-SD-R--KISC 232 (325)
T ss_dssp SC-EEEEEETT-----------TEEEEEET---TTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEE-TT-C--CEEE
T ss_pred cc-eEEEeecc-----------cccccccc---cccccceecccccCCCCccEEeeeccccceeccccc-cc-c--ceee
Confidence 86 44332211 23666766 3222221 21 223456778999985 4444433 22 3 3556
Q ss_pred EcCCCC
Q 005240 329 VCPGSK 334 (706)
Q Consensus 329 ~d~~~~ 334 (706)
+|+.++
T Consensus 233 wd~~~~ 238 (325)
T d1pgua1 233 FDGKSG 238 (325)
T ss_dssp EETTTC
T ss_pred eeeccc
Confidence 677764
|
| >d1brta_ c.69.1.12 (A:) Bromoperoxidase A2 {Streptomyces aureofaciens [TaxId: 1894]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Bromoperoxidase A2 species: Streptomyces aureofaciens [TaxId: 1894]
Probab=99.11 E-value=8.4e-10 Score=107.55 Aligned_cols=82 Identities=12% Similarity=0.068 Sum_probs=59.3
Q ss_pred HHHHHHHCCeEEEEcCCCCcCCCCCCCC--chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHH-HHHHHHHHhC
Q 005240 547 SSLIFLARRFAVLAGPSIPIIGEGDKLP--NDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGA-FMTAHLLAHA 623 (706)
Q Consensus 547 ~~~~l~~~G~~v~~~~~~~~~g~g~~~~--~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG-~~a~~~~~~~ 623 (706)
....|+++||.|++.+.+ |+|.+.. .....+...+|+.+.++.+ +.+++.++|||+|| .++..++.++
T Consensus 42 ~~~~l~~~g~~vi~~D~~---G~G~S~~~~~~~~~~~~~~dl~~~l~~l------~~~~~~lvGhS~G~~~~~~~~a~~~ 112 (277)
T d1brta_ 42 QSAALLDAGYRVITYDRR---GFGQSSQPTTGYDYDTFAADLNTVLETL------DLQDAVLVGFSTGTGEVARYVSSYG 112 (277)
T ss_dssp HHHHHHHTTCEEEEECCT---TSTTSCCCSSCCSHHHHHHHHHHHHHHH------TCCSEEEEEEGGGHHHHHHHHHHHC
T ss_pred HHHHHHhCCCEEEEEeCC---CCCcccccccccchhhhhhhhhhhhhcc------CcccccccccccchhhhhHHHHHhh
Confidence 456678899999986665 4555533 2224566777887777765 23689999999996 4566667888
Q ss_pred CCceeEEEeccCCC
Q 005240 624 PHLFCCGIARSGSY 637 (706)
Q Consensus 624 p~~~~a~v~~~~~~ 637 (706)
|++++++|..+++.
T Consensus 113 p~~v~~lvl~~~~~ 126 (277)
T d1brta_ 113 TARIAKVAFLASLE 126 (277)
T ss_dssp STTEEEEEEESCCC
T ss_pred hcccceEEEecCCC
Confidence 99999999887653
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.09 E-value=7.4e-09 Score=102.07 Aligned_cols=218 Identities=12% Similarity=0.100 Sum_probs=125.1
Q ss_pred ceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccc
Q 005240 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (706)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~ 85 (706)
.|.+.|+.. |+..+...-.....+..+.|+|||+.++... + ..+.+++..+.......... ...
T Consensus 35 ~v~vWd~~~----~~~~~~~~~~h~~~v~~v~~~~~g~~~~~~~---------d--~~v~~~~~~~~~~~~~~~~~-~~~ 98 (299)
T d1nr0a2 35 HINSWDIST----GISNRVFPDVHATMITGIKTTSKGDLFTVSW---------D--DHLKVVPAGGSGVDSSKAVA-NKL 98 (299)
T ss_dssp CEEEEETTT----CCEEECSSCSCSSCEEEEEECTTSCEEEEET---------T--TEEEEECSSSSSSCTTSCCE-EEC
T ss_pred eEEEEECCC----CcEEEEEcCCCCCcEEEEEeeccceeecccc---------e--eeEEEeccCCcccccccccc-ccc
Confidence 588899876 6655443111223578899999998654432 2 46666776554322211100 011
Q ss_pred cccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccC
Q 005240 86 NAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD 165 (706)
Q Consensus 86 ~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~ 165 (706)
...+..+.|+|||+.++.... ..+.+++..
T Consensus 99 ~~~~~~~~~s~~g~~~~~~~~--------------------------------------------------~~i~~~~~~ 128 (299)
T d1nr0a2 99 SSQPLGLAVSADGDIAVAACY--------------------------------------------------KHIAIYSHG 128 (299)
T ss_dssp SSCEEEEEECTTSSCEEEEES--------------------------------------------------SEEEEEETT
T ss_pred ccccccccccccccccccccc--------------------------------------------------ccccccccc
Confidence 112557889999997765532 233333421
Q ss_pred CCceecCCCceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCc
Q 005240 166 GTAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMR 245 (706)
Q Consensus 166 g~~~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~ 245 (706)
+...+........++|+||++.|+..... ..+.+|++.++....+...... ..+.
T Consensus 129 -~~~~~~~~~~~~~~~~s~~~~~l~~g~~d-------------g~i~~~d~~~~~~~~~~~~~~~-----------~~i~ 183 (299)
T d1nr0a2 129 -KLTEVPISYNSSCVALSNDKQFVAVGGQD-------------SKVHVYKLSGASVSEVKTIVHP-----------AEIT 183 (299)
T ss_dssp -EEEEEECSSCEEEEEECTTSCEEEEEETT-------------SEEEEEEEETTEEEEEEEEECS-----------SCEE
T ss_pred -ccccccccccccccccccccccccccccc-------------cccccccccccccccccccccc-----------cccc
Confidence 12222222345678999999998865543 3799999987765543222111 1244
Q ss_pred ceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCc----eEEeecccccccceecCCCceEEEEeeccc
Q 005240 246 SISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP----EILHKLDLRFRSVSWCDDSLALVNETWYKT 321 (706)
Q Consensus 246 ~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~----~~l~~~~~~~~~~~wspDg~~l~~~~~~~~ 321 (706)
.+.|+|+++. |+... .+ ..++++|+ .++.. ..+..+...+..+.|+|+|+.|+..+.+
T Consensus 184 ~~~~~~~~~~-l~~~~-~d-----------~~i~~~~~---~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~d-- 245 (299)
T d1nr0a2 184 SVAFSNNGAF-LVATD-QS-----------RKVIPYSV---ANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLD-- 245 (299)
T ss_dssp EEEECTTSSE-EEEEE-TT-----------SCEEEEEG---GGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETT--
T ss_pred cccccccccc-ccccc-cc-----------cccccccc---cccccccccccccccccccccccccccccceEEEcCC--
Confidence 7899999986 54321 11 23677776 33322 1222345567788999999998876522
Q ss_pred cceEEEEEcCCCC
Q 005240 322 SQTRTWLVCPGSK 334 (706)
Q Consensus 322 ~~~~l~~~d~~~~ 334 (706)
+ .|+++|+.++
T Consensus 246 g--~i~iwd~~~~ 256 (299)
T d1nr0a2 246 N--SVIVWNMNKP 256 (299)
T ss_dssp S--CEEEEETTCT
T ss_pred C--EEEEEECCCC
Confidence 2 3666676664
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.08 E-value=2.7e-08 Score=99.37 Aligned_cols=133 Identities=6% Similarity=-0.011 Sum_probs=75.9
Q ss_pred eeeeecCCCCCCCCc-eEEeecccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCcccccccCCCC
Q 005240 277 IIYTQPAEPAEGEKP-EILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGS 355 (706)
Q Consensus 277 ~l~~~d~~~~~~~~~-~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~ 355 (706)
.+.++|+ ..++. ..+..+...+..+.|+||+..|+..+.+ + .|..+++... ........... ....
T Consensus 207 ~v~i~d~---~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d--~--~i~~~~~~~~--~~~~~~~~~~~----~~~i 273 (340)
T d1tbga_ 207 SAKLWDV---REGMCRQTFTGHESDINAICFFPNGNAFATGSDD--A--TCRLFDLRAD--QELMTYSHDNI----ICGI 273 (340)
T ss_dssp EEEEEET---TTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT--S--CEEEEETTTT--EEEEEECCTTC----CSCE
T ss_pred eEEEEEC---CCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCC--C--eEEEEeeccc--ccccccccccc----cCce
Confidence 4778887 44443 3344556778889999999988876522 2 3556666653 22222211110 1122
Q ss_pred CceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeeecccchhhhhhhhhhccCCCceecc
Q 005240 356 PMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDIN 435 (706)
Q Consensus 356 ~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s 435 (706)
..+.|+|+|++|+..... ..+..+|+.+++....+.... .....+.|+
T Consensus 274 ~~~~~s~~~~~l~~g~~d---------------------g~i~iwd~~~~~~~~~~~~H~-----------~~V~~l~~s 321 (340)
T d1tbga_ 274 TSVSFSKSGRLLLAGYDD---------------------FNCNVWDALKADRAGVLAGHD-----------NRVSCLGVT 321 (340)
T ss_dssp EEEEECSSSCEEEEEETT---------------------SCEEEEETTTCCEEEEECCCS-----------SCEEEEEEC
T ss_pred EEEEECCCCCEEEEEECC---------------------CEEEEEECCCCcEEEEEcCCC-----------CCEEEEEEe
Confidence 347789999988765421 135667777776544443321 112346899
Q ss_pred cCCCEEEEEEecCCCCcEEEEEE
Q 005240 436 LNQLKILTSKESKTEITQYHILS 458 (706)
Q Consensus 436 ~Dg~~l~~~~~~~~~p~~v~~~~ 458 (706)
||++.|+....+. .|++||
T Consensus 322 ~d~~~l~s~s~Dg----~v~iWd 340 (340)
T d1tbga_ 322 DDGMAVATGSWDS----FLKIWN 340 (340)
T ss_dssp TTSSCEEEEETTS----CEEEEC
T ss_pred CCCCEEEEEccCC----EEEEeC
Confidence 9998776543333 366664
|
| >d2rhwa1 c.69.1.10 (A:4-286) 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) {Burkholderia xenovorans [TaxId: 36873]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carbon-carbon bond hydrolase domain: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) species: Burkholderia xenovorans [TaxId: 36873]
Probab=99.07 E-value=1.1e-09 Score=107.37 Aligned_cols=79 Identities=13% Similarity=0.072 Sum_probs=58.6
Q ss_pred HHHHHCCeEEEEcCCCCcCCCCCCCCc---hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCC
Q 005240 549 LIFLARRFAVLAGPSIPIIGEGDKLPN---DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH 625 (706)
Q Consensus 549 ~~l~~~G~~v~~~~~~~~~g~g~~~~~---~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~ 625 (706)
..+++.||.|++++.+ |+|.+... ........+|+.+.++.+ +.+++.++|||+||.+++.++.++|+
T Consensus 54 ~~~~~~g~~v~~~D~~---G~G~S~~~~~~~~~~~~~~~~i~~li~~l------~~~~~~lvGhS~Gg~ia~~~a~~~p~ 124 (283)
T d2rhwa1 54 GPFVDAGYRVILKDSP---GFNKSDAVVMDEQRGLVNARAVKGLMDAL------DIDRAHLVGNAMGGATALNFALEYPD 124 (283)
T ss_dssp HHHHHTTCEEEEECCT---TSTTSCCCCCSSCHHHHHHHHHHHHHHHH------TCCCEEEEEETHHHHHHHHHHHHCGG
T ss_pred HHHHHCCCEEEEEeCC---CCcccccccccccccchhhhhcccccccc------cccccccccccchHHHHHHHHHHhhh
Confidence 4567899999996665 45554331 223334456666666654 34689999999999999999999999
Q ss_pred ceeEEEeccCC
Q 005240 626 LFCCGIARSGS 636 (706)
Q Consensus 626 ~~~a~v~~~~~ 636 (706)
+++++++.++.
T Consensus 125 ~v~~lil~~~~ 135 (283)
T d2rhwa1 125 RIGKLILMGPG 135 (283)
T ss_dssp GEEEEEEESCS
T ss_pred hcceEEEeCCC
Confidence 99999998864
|
| >d1j1ia_ c.69.1.10 (A:) Meta cleavage compound hydrolase CarC {Janthinobacterium sp. J3 [TaxId: 213804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carbon-carbon bond hydrolase domain: Meta cleavage compound hydrolase CarC species: Janthinobacterium sp. J3 [TaxId: 213804]
Probab=99.07 E-value=1.2e-09 Score=105.99 Aligned_cols=77 Identities=14% Similarity=0.196 Sum_probs=55.4
Q ss_pred HHCCeEEEEcCCCCcCCCCCCCC--chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeE
Q 005240 552 LARRFAVLAGPSIPIIGEGDKLP--NDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCC 629 (706)
Q Consensus 552 ~~~G~~v~~~~~~~~~g~g~~~~--~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a 629 (706)
.+.||.|++++.+ |+|.+.. .....+....|+.+.++.+ + + ..++.++|||+||.+++.++.++|+++++
T Consensus 48 l~~~~~v~~~D~~---G~G~S~~~~~~~~~~~~~~~~~~~i~~l---~-~-~~~~~liG~S~Gg~ia~~~a~~~p~~v~~ 119 (268)
T d1j1ia_ 48 LARHYRVIAMDML---GFGKTAKPDIEYTQDRRIRHLHDFIKAM---N-F-DGKVSIVGNSMGGATGLGVSVLHSELVNA 119 (268)
T ss_dssp HTTTSEEEEECCT---TSTTSCCCSSCCCHHHHHHHHHHHHHHS---C-C-SSCEEEEEEHHHHHHHHHHHHHCGGGEEE
T ss_pred HhcCCEEEEEccc---ccccccCCccccccccccccchhhHHHh---h-h-cccceeeeccccccccchhhccChHhhhe
Confidence 3679999996665 4454432 2334455566666655433 2 2 25799999999999999999999999999
Q ss_pred EEeccCC
Q 005240 630 GIARSGS 636 (706)
Q Consensus 630 ~v~~~~~ 636 (706)
+|..++.
T Consensus 120 lil~~~~ 126 (268)
T d1j1ia_ 120 LVLMGSA 126 (268)
T ss_dssp EEEESCC
T ss_pred eeecCCC
Confidence 9988764
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.06 E-value=3.8e-09 Score=108.23 Aligned_cols=234 Identities=15% Similarity=0.175 Sum_probs=133.8
Q ss_pred cceeEeecCCCCCCCCeeeeecCCCC-CcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCc
Q 005240 5 TGIGIHRLLPDDSLGPEKEVHGYPDG-AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~i~~~~~~-~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~ 83 (706)
..|.|++++. ++..++..+... ..+..+.|||||++|+.... + ..|.++++.+++.++.......
T Consensus 29 ~~i~iw~~~~----~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~--------D--~~i~vWd~~~~~~~~~~~~~~~ 94 (371)
T d1k8kc_ 29 HEVHIYEKSG----NKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGT--------D--RNAYVWTLKGRTWKPTLVILRI 94 (371)
T ss_dssp SEEEEEEEET----TEEEEEEEEECCSSCEEEEEEETTTTEEEEEET--------T--SCEEEEEEETTEEEEEEECCCC
T ss_pred CEEEEEECCC----CCEEEEEEecCCCCCEEEEEECCCCCEEEEEEC--------C--CeEEEEeecccccccccccccc
Confidence 3588999976 766665544332 25889999999999987542 3 3556666666554333211111
Q ss_pred cccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEc
Q 005240 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (706)
Q Consensus 84 ~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~ 163 (706)
...+..+.|+||++.|+..+.. +.-.+|.++
T Consensus 95 --~~~v~~i~~~p~~~~l~~~s~d-----------------------------------------------~~i~i~~~~ 125 (371)
T d1k8kc_ 95 --NRAARCVRWAPNEKKFAVGSGS-----------------------------------------------RVISICYFE 125 (371)
T ss_dssp --SSCEEEEEECTTSSEEEEEETT-----------------------------------------------SSEEEEEEE
T ss_pred --cccccccccccccccceeeccc-----------------------------------------------Ccceeeeee
Confidence 1236788999999998876421 112444444
Q ss_pred cCCCc---eecCCC--ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccC-CCCCCCCc--
Q 005240 164 LDGTA---KDFGTP--AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDL-PPAEDIPV-- 235 (706)
Q Consensus 164 l~g~~---~~lt~~--~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~-~~~~~~p~-- 235 (706)
..... ...... ..+..++|+|||++|+..+.+ ..+.+|++........... ......+.
T Consensus 126 ~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D-------------~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (371)
T d1k8kc_ 126 QENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD-------------FKCRIFSAYIKEVEERPAPTPWGSKMPFGE 192 (371)
T ss_dssp TTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETT-------------SCEEEEECCCTTTSCCCCCBTTBSCCCTTC
T ss_pred cccccccccccccccccccccccccccccceeccccC-------------cEEEEEeeccCcccccccccccccccccee
Confidence 32211 111111 567889999999999765543 3678888764322111000 00000000
Q ss_pred --c-cCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCC-ceEEeecccccccceecCCCc
Q 005240 236 --C-YNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEK-PEILHKLDLRFRSVSWCDDSL 311 (706)
Q Consensus 236 --~-~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-~~~l~~~~~~~~~~~wspDg~ 311 (706)
. .......+..++|+|||+. |+... . ...|.+||+ ..+. ...+......+..+.|+|||+
T Consensus 193 ~~~~~~~~~~~v~~~~~s~~g~~-l~s~~-~-----------d~~i~iwd~---~~~~~~~~~~~~~~~v~s~~fs~d~~ 256 (371)
T d1k8kc_ 193 LMFESSSSCGWVHGVCFSANGSR-VAWVS-H-----------DSTVCLADA---DKKMAVATLASETLPLLAVTFITESS 256 (371)
T ss_dssp EEEECCCCSSCEEEEEECSSSSE-EEEEE-T-----------TTEEEEEEG---GGTTEEEEEECSSCCEEEEEEEETTE
T ss_pred eeeeccCccCcEEEEEeeccccc-ccccc-c-----------CCcceEEee---ecccceeeeecccccceeeeecCCCC
Confidence 0 0000112347799999986 65442 1 124778888 3333 334455566788899999998
Q ss_pred eEEEEeeccccceEEEEEcCCC
Q 005240 312 ALVNETWYKTSQTRTWLVCPGS 333 (706)
Q Consensus 312 ~l~~~~~~~~~~~~l~~~d~~~ 333 (706)
.|+... +....+|.++...
T Consensus 257 ~la~g~---d~~~~~~~~~~~~ 275 (371)
T d1k8kc_ 257 LVAAGH---DCFPVLFTYDSAA 275 (371)
T ss_dssp EEEEET---TSSCEEEEEETTT
T ss_pred EEEEEc---CCceEEEEeeCCC
Confidence 776543 2445678777654
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.05 E-value=6.2e-08 Score=100.98 Aligned_cols=63 Identities=13% Similarity=0.234 Sum_probs=46.8
Q ss_pred cceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEec
Q 005240 34 NFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIP 106 (706)
Q Consensus 34 ~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~ 106 (706)
....+||||++|||+.+. .++....|+++|+++|+....+-... ....+.|++|++.|+|+..
T Consensus 128 ~~~~~Spd~~~la~s~d~-----~G~e~~~l~v~Dl~tg~~~~~~i~~~-----~~~~~~W~~D~~~~~Y~~~ 190 (430)
T d1qfma1 128 RGYAFSEDGEYFAYGLSA-----SGSDWVTIKFMKVDGAKELPDVLERV-----KFSCMAWTHDGKGMFYNAY 190 (430)
T ss_dssp EEEEECTTSSEEEEEEEE-----TTCSCEEEEEEETTTTEEEEEEEEEE-----CSCCEEECTTSSEEEEEEC
T ss_pred cceEecCCCCEEEEEecc-----ccCchheeEEeccCcceecccccccc-----cccceEEcCCCCEEEEEEe
Confidence 456899999999999863 23667899999999998654321111 1357899999999988754
|
| >d1xkla_ c.69.1.20 (A:) Salicylic acid-binding protein 2 (SABP2) {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hydroxynitrile lyase-like domain: Salicylic acid-binding protein 2 (SABP2) species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=99.05 E-value=8.9e-10 Score=105.42 Aligned_cols=100 Identities=12% Similarity=0.035 Sum_probs=67.2
Q ss_pred eEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCCCCch---hhHHHHHHHHHHHH
Q 005240 514 PCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPND---RFVEQLVSSAEAAV 590 (706)
Q Consensus 514 p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~---~~~~~~~~D~~~~~ 590 (706)
|.||++||.+.. ...| ...+..|+++||.|++++.+ |+|.+.... ........|+...+
T Consensus 3 ~~vvllHG~~~~-----------~~~w----~~~~~~L~~~g~~vi~~Dl~---G~G~S~~~~~~~~~~~~~~~~~~~~~ 64 (258)
T d1xkla_ 3 KHFVLVHGACHG-----------GWSW----YKLKPLLEAAGHKVTALDLA---ASGTDLRKIEELRTLYDYTLPLMELM 64 (258)
T ss_dssp CEEEEECCTTCC-----------GGGG----TTHHHHHHHTTCEEEECCCT---TSTTCCCCGGGCCSHHHHHHHHHHHH
T ss_pred CcEEEECCCCCC-----------HHHH----HHHHHHHHhCCCEEEEecCC---CCCCCCCCCCCCcchHHHHHHHhhhh
Confidence 357779996421 1112 13567888999999996655 666664422 12333344433322
Q ss_pred HHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCC
Q 005240 591 EEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 636 (706)
Q Consensus 591 ~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~ 636 (706)
..... ..++.+.|||+||.+++.++.++|++++.++..++.
T Consensus 65 ----~~~~~-~~~~~lvghS~Gg~va~~~a~~~p~~~~~lil~~~~ 105 (258)
T d1xkla_ 65 ----ESLSA-DEKVILVGHSLGGMNLGLAMEKYPQKIYAAVFLAAF 105 (258)
T ss_dssp ----HTSCS-SSCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred ----hcccc-cccccccccchhHHHHHHHhhhhccccceEEEeccc
Confidence 22222 368999999999999999999999999999988765
|
| >d1hkha_ c.69.1.12 (A:) Gamma-lactamase {Aureobacterium sp. [TaxId: 51671]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Gamma-lactamase species: Aureobacterium sp. [TaxId: 51671]
Probab=99.05 E-value=2.8e-09 Score=103.91 Aligned_cols=99 Identities=10% Similarity=0.051 Sum_probs=67.9
Q ss_pred eEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCCCCc--hhhHHHHHHHHHHHHH
Q 005240 514 PCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPN--DRFVEQLVSSAEAAVE 591 (706)
Q Consensus 514 p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~--~~~~~~~~~D~~~~~~ 591 (706)
|.||++||.+..+ ..+ ...+..|++.||.|++.+.+ |+|.+... ....+...+|+.+.++
T Consensus 24 ~~illlHG~~~~~-----------~~~----~~~~~~l~~~~~~vi~~D~~---G~G~S~~~~~~~~~~~~~~di~~~i~ 85 (279)
T d1hkha_ 24 QPVVLIHGYPLDG-----------HSW----ERQTRELLAQGYRVITYDRR---GFGGSSKVNTGYDYDTFAADLHTVLE 85 (279)
T ss_dssp EEEEEECCTTCCG-----------GGG----HHHHHHHHHTTEEEEEECCT---TSTTSCCCSSCCSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCH-----------HHH----HHHHHHHHHCCCEEEEEech---hhCCccccccccchhhhhhhhhhhhh
Confidence 5688899964311 111 13456678899999996654 45554332 2235666777777776
Q ss_pred HHHHcCCCCCCcEEEEEechHH-HHHHHHHHhCCCceeEEEeccCC
Q 005240 592 EVVRRGVADPSRIAVGGHSYGA-FMTAHLLAHAPHLFCCGIARSGS 636 (706)
Q Consensus 592 ~l~~~~~id~~~i~i~G~S~GG-~~a~~~~~~~p~~~~a~v~~~~~ 636 (706)
.+ +.+++.++|||+|| .++..++.++|++++.++..++.
T Consensus 86 ~l------~~~~~~lvGhS~Gg~~~a~~~a~~~p~~v~~lvli~~~ 125 (279)
T d1hkha_ 86 TL------DLRDVVLVGFSMGTGELARYVARYGHERVAKLAFLASL 125 (279)
T ss_dssp HH------TCCSEEEEEETHHHHHHHHHHHHHCSTTEEEEEEESCC
T ss_pred hc------CcCccccccccccccchhhhhccccccccceeEEeecc
Confidence 65 34689999999996 55666777889999999988764
|
| >d1bn7a_ c.69.1.8 (A:) Haloalkane dehalogenase {Rhodococcus sp. [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloalkane dehalogenase domain: Haloalkane dehalogenase species: Rhodococcus sp. [TaxId: 1831]
Probab=99.04 E-value=1.2e-09 Score=107.36 Aligned_cols=114 Identities=14% Similarity=0.051 Sum_probs=78.0
Q ss_pred cCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCC
Q 005240 490 KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGE 569 (706)
Q Consensus 490 ~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~ 569 (706)
.||..|+...+-|++ -|+||++||.+.. ...+. ..+..| +.||.|+.++.+ |+
T Consensus 14 ~~g~~i~y~~~G~~~--------~p~lvllHG~~~~-----------~~~~~----~~~~~L-~~~~~vi~~d~~---G~ 66 (291)
T d1bn7a_ 14 VLGERMHYVDVGPRD--------GTPVLFLHGNPTS-----------SYLWR----NIIPHV-APSHRCIAPDLI---GM 66 (291)
T ss_dssp ETTEEEEEEEESCSS--------SSCEEEECCTTCC-----------GGGGT----TTHHHH-TTTSCEEEECCT---TS
T ss_pred ECCEEEEEEEeCCCC--------CCeEEEECCCCCC-----------HHHHH----HHHHHH-hcCCEEEEEeCC---CC
Confidence 378899877775543 2568889996521 11121 234555 469999986665 45
Q ss_pred CCCCC--chhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCC
Q 005240 570 GDKLP--NDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 636 (706)
Q Consensus 570 g~~~~--~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~ 636 (706)
|.+.. .....+...+|+..+++.+ +-.++.++|||+||.+++.++.++|+++++++...+.
T Consensus 67 G~S~~~~~~~~~~~~~~~l~~~l~~l------~~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~li~~~~~ 129 (291)
T d1bn7a_ 67 GKSDKPDLDYFFDDHVRYLDAFIEAL------GLEEVVLVIHDWGSALGFHWAKRNPERVKGIACMEFI 129 (291)
T ss_dssp TTSCCCSCCCCHHHHHHHHHHHHHHT------TCCSEEEEEEHHHHHHHHHHHHHCGGGEEEEEEEEEC
T ss_pred ccccccccccchhHHHHHHhhhhhhh------ccccccccccccccchhHHHHHhCCcceeeeeeeccc
Confidence 55433 2233556666766666544 3468999999999999999999999999999887654
|
| >d1va4a_ c.69.1.12 (A:) Arylesterase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Arylesterase species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.04 E-value=2.2e-09 Score=103.86 Aligned_cols=118 Identities=13% Similarity=0.116 Sum_probs=77.1
Q ss_pred EEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCC
Q 005240 486 KYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIP 565 (706)
Q Consensus 486 ~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~ 565 (706)
+|.+.||++|+...+ +. + |.||++||.+.. ...+ ...+..|+++||.|++.+.+
T Consensus 2 ~f~~~dG~~l~y~~~-------G~-g--~~vv~lHG~~~~-----------~~~~----~~~~~~l~~~g~~vi~~D~~- 55 (271)
T d1va4a_ 2 TFVAKDGTQIYFKDW-------GS-G--KPVLFSHGWLLD-----------ADMW----EYQMEYLSSRGYRTIAFDRR- 55 (271)
T ss_dssp EEECTTSCEEEEEEE-------SS-S--SEEEEECCTTCC-----------GGGG----HHHHHHHHTTTCEEEEECCT-
T ss_pred EEEeECCeEEEEEEE-------cC-C--CeEEEECCCCCC-----------HHHH----HHHHHHHHhCCCEEEEEecc-
Confidence 467789999986544 11 1 346789996421 0111 23456788899999986665
Q ss_pred cCCCCCCCCc--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHH-HHHHhCCCceeEEEeccCCC
Q 005240 566 IIGEGDKLPN--DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTA-HLLAHAPHLFCCGIARSGSY 637 (706)
Q Consensus 566 ~~g~g~~~~~--~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~-~~~~~~p~~~~a~v~~~~~~ 637 (706)
|+|.+... ....+...+|+...++.+ +.+++.++|||+||.+++ .++.++|++++.++..++..
T Consensus 56 --G~G~S~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~vg~s~gG~~~~~~~a~~~p~~v~~~v~~~~~~ 122 (271)
T d1va4a_ 56 --GFGRSDQPWTGNDYDTFADDIAQLIEHL------DLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLGAVT 122 (271)
T ss_dssp --TSTTSCCCSSCCSHHHHHHHHHHHHHHH------TCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCCC
T ss_pred --ccccccccccccccccccccceeeeeec------CCCcceeeccccccccccccccccccceeeEEEeecccc
Confidence 45544322 223455566666655544 457899999999887665 55677899999999887654
|
| >d3c70a1 c.69.1.20 (A:2-257) Hydroxynitrile lyase {Rubber tree (Hevea brasiliensis) [TaxId: 3981]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hydroxynitrile lyase-like domain: Hydroxynitrile lyase species: Rubber tree (Hevea brasiliensis) [TaxId: 3981]
Probab=99.03 E-value=1.5e-09 Score=103.99 Aligned_cols=84 Identities=11% Similarity=-0.002 Sum_probs=60.4
Q ss_pred hHHHHHHHCCeEEEEcCCCCcCCCCCCCCch---hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHh
Q 005240 546 TSSLIFLARRFAVLAGPSIPIIGEGDKLPND---RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAH 622 (706)
Q Consensus 546 ~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~---~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~ 622 (706)
..+..|+++||.|++++-+ |+|.+.... ...+...+|+.+.++ +.. ..+++.++|||+||.+++.++.+
T Consensus 20 ~~~~~L~~~g~~Via~Dl~---G~G~S~~~~~~~~~~~~~~~~l~~~~~---~~~--~~~~~~lvGhS~Gg~ia~~~a~~ 91 (256)
T d3c70a1 20 KLKPLLEALGHKVTALDLA---ASGVDPRQIEEIGSFDEYSEPLLTFLE---ALP--PGEKVILVGESCGGLNIAIAADK 91 (256)
T ss_dssp THHHHHHHTTCEEEEECCT---TSTTCSCCGGGCCSHHHHTHHHHHHHH---HSC--TTCCEEEEEETTHHHHHHHHHHH
T ss_pred HHHHHHHhCCCEEEEEcCC---CCCCCCCCCCCCCCHHHHHHHhhhhhh---hhc--cccceeecccchHHHHHHHHhhc
Confidence 3567788999999996655 566654321 234444555544333 322 34789999999999999999999
Q ss_pred CCCceeEEEeccCCC
Q 005240 623 APHLFCCGIARSGSY 637 (706)
Q Consensus 623 ~p~~~~a~v~~~~~~ 637 (706)
+|++++++|..++..
T Consensus 92 ~p~~v~~lvl~~~~~ 106 (256)
T d3c70a1 92 YCEKIAAAVFHNSVL 106 (256)
T ss_dssp HGGGEEEEEEESCCC
T ss_pred Cchhhhhhheecccc
Confidence 999999999888653
|
| >d1b6ga_ c.69.1.8 (A:) Haloalkane dehalogenase {Xanthobacter autotrophicus [TaxId: 280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloalkane dehalogenase domain: Haloalkane dehalogenase species: Xanthobacter autotrophicus [TaxId: 280]
Probab=99.02 E-value=1.8e-09 Score=107.54 Aligned_cols=117 Identities=16% Similarity=0.055 Sum_probs=81.9
Q ss_pred ccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCC
Q 005240 489 RKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIG 568 (706)
Q Consensus 489 ~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g 568 (706)
+.||..++..-.-|++ ..|+||++||.+.. ...+ ......|++.||.|+.++-+ |
T Consensus 30 ~~~g~~~~y~~~G~~~-------~~p~llllHG~~~~-----------~~~~----~~~~~~l~~~~~~vi~~Dl~---G 84 (310)
T d1b6ga_ 30 GYPGLRAHYLDEGNSD-------AEDVFLCLHGEPTW-----------SYLY----RKMIPVFAESGARVIAPDFF---G 84 (310)
T ss_dssp TCTTCEEEEEEEECTT-------CSCEEEECCCTTCC-----------GGGG----TTTHHHHHHTTCEEEEECCT---T
T ss_pred CCCCEEEEEEEecCCC-------CCCEEEEECCCCCc-----------hHHH----HHHHHHhhccCceEEEeeec---C
Confidence 3478888765554432 24899999996531 1112 23457788899999985554 5
Q ss_pred CCCCCCc----hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCC
Q 005240 569 EGDKLPN----DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 636 (706)
Q Consensus 569 ~g~~~~~----~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~ 636 (706)
+|.+... ........+|+.+.++.+ +.+++.++||||||.+++.++.++|++++++|..++.
T Consensus 85 ~G~S~~~~~~~~~~~~~~~~~l~~~l~~l------~~~~~~lvGhS~Gg~ia~~~A~~~P~~V~~lvl~~~~ 150 (310)
T d1b6ga_ 85 FGKSDKPVDEEDYTFEFHRNFLLALIERL------DLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNAC 150 (310)
T ss_dssp STTSCEESCGGGCCHHHHHHHHHHHHHHH------TCCSEEEEECTHHHHHHTTSGGGSGGGEEEEEEESCC
T ss_pred ccccccccccccccccccccchhhhhhhc------cccccccccceecccccccchhhhccccceEEEEcCc
Confidence 6666431 124555666666666544 3468999999999999999999999999999988764
|
| >d1uk8a_ c.69.1.10 (A:) Meta-cleavage product hydrolase CumD {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carbon-carbon bond hydrolase domain: Meta-cleavage product hydrolase CumD species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.01 E-value=2.5e-09 Score=103.81 Aligned_cols=76 Identities=9% Similarity=0.069 Sum_probs=53.3
Q ss_pred HCCeEEEEcCCCCcCCCCCCCCc---hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeE
Q 005240 553 ARRFAVLAGPSIPIIGEGDKLPN---DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCC 629 (706)
Q Consensus 553 ~~G~~v~~~~~~~~~g~g~~~~~---~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a 629 (706)
+.||.|+.++.+ |+|.+... ....+....++.. +.+. ++.+++.++||||||.+++.++.++|+++++
T Consensus 50 ~~~~~vi~~Dl~---G~G~S~~~~~~~~~~~~~~~~~~~----~~~~--l~~~~~~lvG~S~Gg~ia~~~a~~~p~~~~~ 120 (271)
T d1uk8a_ 50 SKFYRVIAPDMV---GFGFTDRPENYNYSKDSWVDHIIG----IMDA--LEIEKAHIVGNAFGGGLAIATALRYSERVDR 120 (271)
T ss_dssp TTTSEEEEECCT---TSTTSCCCTTCCCCHHHHHHHHHH----HHHH--TTCCSEEEEEETHHHHHHHHHHHHCGGGEEE
T ss_pred hCCCEEEEEeCC---CCCCccccccccccccccchhhhh----hhhh--hcCCCceEeeccccceeehHHHHhhhccchh
Confidence 579999986655 55555332 1223334444433 3333 2346899999999999999999999999999
Q ss_pred EEeccCCC
Q 005240 630 GIARSGSY 637 (706)
Q Consensus 630 ~v~~~~~~ 637 (706)
++...+..
T Consensus 121 lil~~~~~ 128 (271)
T d1uk8a_ 121 MVLMGAAG 128 (271)
T ss_dssp EEEESCCC
T ss_pred eeecccCC
Confidence 99887653
|
| >d1azwa_ c.69.1.7 (A:) Proline iminopeptidase {Xanthomonas campestris, pv. citri [TaxId: 339]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Proline iminopeptidase-like domain: Proline iminopeptidase species: Xanthomonas campestris, pv. citri [TaxId: 339]
Probab=99.00 E-value=1.3e-09 Score=108.91 Aligned_cols=121 Identities=14% Similarity=0.034 Sum_probs=83.4
Q ss_pred EEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcC
Q 005240 483 EMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGP 562 (706)
Q Consensus 483 ~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~ 562 (706)
+.-.++..||..|+...+-.++ -|.||++||++-. ...+ .....+.+.||.|++++
T Consensus 12 ~~~~i~~~dg~~i~y~~~G~~~--------g~pvvllHG~~g~-----------~~~~-----~~~~~~l~~~~~Vi~~D 67 (313)
T d1azwa_ 12 QQGSLKVDDRHTLYFEQCGNPH--------GKPVVMLHGGPGG-----------GCND-----KMRRFHDPAKYRIVLFD 67 (313)
T ss_dssp EEEEEECSSSCEEEEEEEECTT--------SEEEEEECSTTTT-----------CCCG-----GGGGGSCTTTEEEEEEC
T ss_pred CCCEEEeCCCcEEEEEEecCCC--------CCEEEEECCCCCC-----------ccch-----HHHhHHhhcCCEEEEEe
Confidence 5566677789889887775432 2457779997521 0111 12223346899999966
Q ss_pred CCCcCCCCCCCCc----hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCC
Q 005240 563 SIPIIGEGDKLPN----DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 636 (706)
Q Consensus 563 ~~~~~g~g~~~~~----~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~ 636 (706)
.+ |+|.+... ........+|+...++.+ ..+++.|+|||+||.+++.++.++|++++.++..++.
T Consensus 68 ~r---G~G~S~~~~~~~~~~~~~~~~dl~~~~~~l------~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~ 136 (313)
T d1azwa_ 68 QR---GSGRSTPHADLVDNTTWDLVADIERLRTHL------GVDRWQVFGGSWGSTLALAYAQTHPQQVTELVLRGIF 136 (313)
T ss_dssp CT---TSTTSBSTTCCTTCCHHHHHHHHHHHHHHT------TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred cc---ccCCCCccccccchhHHHHHHHHHHHHHhh------ccccceeEEecCCcHHHHHHHHHhhhceeeeeEeccc
Confidence 65 56666432 123556667777766654 3468999999999999999999999999999988764
|
| >d1uxoa_ c.69.1.31 (A:) Hypothetical protein YdeN {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: YdeN-like domain: Hypothetical protein YdeN species: Bacillus subtilis [TaxId: 1423]
Probab=98.99 E-value=3e-09 Score=97.16 Aligned_cols=128 Identities=13% Similarity=-0.031 Sum_probs=78.1
Q ss_pred hHHHHHHHCCeEEEEcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCC
Q 005240 546 TSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH 625 (706)
Q Consensus 546 ~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~ 625 (706)
.+++.|+++||.|+.++..+ .|.. . .+| .++.+.+.......++.++||||||++++.++.+.|.
T Consensus 21 ~l~~~L~~~G~~v~~~d~p~---~~~~-----~----~~~---~~~~l~~~~~~~~~~~~lvGhS~Gg~~a~~~a~~~~~ 85 (186)
T d1uxoa_ 21 WLKKRLLADGVQADILNMPN---PLQP-----R----LED---WLDTLSLYQHTLHENTYLVAHSLGCPAILRFLEHLQL 85 (186)
T ss_dssp HHHHHHHHTTCEEEEECCSC---TTSC-----C----HHH---HHHHHHTTGGGCCTTEEEEEETTHHHHHHHHHHTCCC
T ss_pred HHHHHHHhCCCEEEEeccCC---CCcc-----h----HHH---HHHHHHHHHhccCCCcEEEEechhhHHHHHHHHhCCc
Confidence 45678899999999977643 3322 1 222 2333333323456799999999999999999999987
Q ss_pred ce--eEEEeccCCCCCCCC----------Cccc------------------------hHHHHHHHHHhCCCcEEEEEeCC
Q 005240 626 LF--CCGIARSGSYNKTLT----------PFGF------------------------QAERFFDALKGHGALSRLVLLPF 669 (706)
Q Consensus 626 ~~--~a~v~~~~~~d~~~~----------~~~~------------------------~~~~~~~~l~~~~~~~~~~~~~~ 669 (706)
.. .++++.++....... +... ..+++++++ +.+++++|+
T Consensus 86 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~lvi~g~~D~~vp~~~~~~l~~~~-----~~~~~~~~~ 160 (186)
T d1uxoa_ 86 RAALGGIILVSGFAKSLPTLQMLDEFTQGSFDHQKIIESAKHRAVIASKDDQIVPFSFSKDLAQQI-----DAALYEVQH 160 (186)
T ss_dssp SSCEEEEEEETCCSSCCTTCGGGGGGTCSCCCHHHHHHHEEEEEEEEETTCSSSCHHHHHHHHHHT-----TCEEEEETT
T ss_pred cceeeEEeecccccccchhhhhhhhhhcccccccccccCCCCEEEEecCCCCCCCHHHHHHHHHHc-----CCEEEEeCC
Confidence 54 344444443221110 0000 112444443 468999999
Q ss_pred CCccCCCc--ccHHHHHHHHHHHHHH
Q 005240 670 EHHVYAAR--ENVMHVIWETDRWLQK 693 (706)
Q Consensus 670 ~~H~~~~~--~~~~~~~~~~~~f~~~ 693 (706)
++|..... ....++.+.+.+||.+
T Consensus 161 ~gH~~~~~~~~~~~~~~~~l~~~~~~ 186 (186)
T d1uxoa_ 161 GGHFLEDEGFTSLPIVYDVLTSYFSK 186 (186)
T ss_dssp CTTSCGGGTCSCCHHHHHHHHHHHHC
T ss_pred CCCcCccccCcccHHHHHHHHHHHcC
Confidence 99976432 2345777788887753
|
| >d1a8sa_ c.69.1.12 (A:) Chloroperoxidase F {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Chloroperoxidase F species: Pseudomonas fluorescens [TaxId: 294]
Probab=98.99 E-value=6.4e-09 Score=100.79 Aligned_cols=117 Identities=13% Similarity=0.161 Sum_probs=75.7
Q ss_pred EEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCC
Q 005240 486 KYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIP 565 (706)
Q Consensus 486 ~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~ 565 (706)
+|++.||.+|+.... +. + |.||++||.+.. ...+ ......|+++||.|++++.+
T Consensus 2 ~f~~~dG~~i~y~~~-------G~-g--~pvvllHG~~~~-----------~~~~----~~~~~~l~~~~~~vi~~D~~- 55 (273)
T d1a8sa_ 2 TFTTRDGTQIYYKDW-------GS-G--QPIVFSHGWPLN-----------ADSW----ESQMIFLAAQGYRVIAHDRR- 55 (273)
T ss_dssp EEECTTSCEEEEEEE-------SC-S--SEEEEECCTTCC-----------GGGG----HHHHHHHHHTTCEEEEECCT-
T ss_pred EEEeeCCcEEEEEEE-------CC-C--CeEEEECCCCCC-----------HHHH----HHHHHHHHhCCCEEEEEech-
Confidence 577889999877654 12 1 346789996421 1111 23456788899999986665
Q ss_pred cCCCCCCCCc--hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHH-HHHHHhCCCceeEEEeccCC
Q 005240 566 IIGEGDKLPN--DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMT-AHLLAHAPHLFCCGIARSGS 636 (706)
Q Consensus 566 ~~g~g~~~~~--~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a-~~~~~~~p~~~~a~v~~~~~ 636 (706)
|+|.+... ........+|+.+.++.+ +..+..++|+|+||.++ .+++.+.|+++++++..++.
T Consensus 56 --G~G~S~~~~~~~~~~~~~~~~~~~l~~l------~~~~~~lvg~s~gG~~~~~~~a~~~p~~v~~~~l~~~~ 121 (273)
T d1a8sa_ 56 --GHGRSSQPWSGNDMDTYADDLAQLIEHL------DLRDAVLFGFSTGGGEVARYIGRHGTARVAKAGLISAV 121 (273)
T ss_dssp --TSTTSCCCSSCCSHHHHHHHHHHHHHHT------TCCSEEEEEETHHHHHHHHHHHHHCSTTEEEEEEESCC
T ss_pred --hcCccccccccccccchHHHHHHHHHhc------CccceeeeeeccCCccchhhhhhhhhhccceeEEEecc
Confidence 45544332 223455666766665543 34578899999987654 55566779999998888764
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.98 E-value=2.6e-08 Score=101.47 Aligned_cols=85 Identities=11% Similarity=-0.002 Sum_probs=54.9
Q ss_pred ceeEeecCCCCCCCCeeeee--cCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCc
Q 005240 6 GIGIHRLLPDDSLGPEKEVH--GYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (706)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~i~--~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~ 83 (706)
+|++..++. +.++...+. .++.....+.+++||||+.|+-+ + .+....|.++.+++.........+
T Consensus 15 ~i~~~~fd~--~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~-~--------~~~~~~~~i~~~~~~~~~~~~~~~- 82 (365)
T d1jofa_ 15 AIFTVQFDD--EKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGA-A--------MKKWSSFAVKSPTEIVHEASHPIG- 82 (365)
T ss_dssp EEEEEEEET--TTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEE-E--------BTEEEEEEEEETTEEEEEEEEECC-
T ss_pred CEEEEEEcC--CCCeEEEeeeeeccCCCCCCEEEEcCCCCEEEEE-e--------CCcEEEEEEeCCCCeEEEeeecCC-
Confidence 688888877 566655443 24455456789999999999554 3 345678888877665444332111
Q ss_pred cccccccceEEecCCcEEEEEe
Q 005240 84 CLNAVFGSFVWVNNSTLLIFTI 105 (706)
Q Consensus 84 ~~~~~~~~~~wSpDg~~l~~~~ 105 (706)
........++||+.+++..
T Consensus 83 ---~~p~~v~~~~~~~~~~v~~ 101 (365)
T d1jofa_ 83 ---GHPRANDADTNTRAIFLLA 101 (365)
T ss_dssp ---SSGGGGCTTSCCEEEEEEE
T ss_pred ---CCcEEEEECCCCCEEEEEE
Confidence 1255678899999766543
|
| >d1ehya_ c.69.1.11 (A:) Bacterial epoxide hydrolase {Agrobacterium radiobacter [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Epoxide hydrolase domain: Bacterial epoxide hydrolase species: Agrobacterium radiobacter [TaxId: 358]
Probab=98.98 E-value=5.1e-09 Score=102.73 Aligned_cols=118 Identities=13% Similarity=0.047 Sum_probs=76.1
Q ss_pred EEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcC
Q 005240 483 EMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGP 562 (706)
Q Consensus 483 ~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~ 562 (706)
+..+++. +|..|+.... +. -|+||++||.+.. ...| ...+..| +.+|.|++++
T Consensus 9 ~~~~~~~-~~~~l~y~~~-------G~---gp~vv~lHG~~~~-----------~~~~----~~~~~~l-~~~~~vi~~D 61 (293)
T d1ehya_ 9 KHYEVQL-PDVKIHYVRE-------GA---GPTLLLLHGWPGF-----------WWEW----SKVIGPL-AEHYDVIVPD 61 (293)
T ss_dssp CEEEEEC-SSCEEEEEEE-------EC---SSEEEEECCSSCC-----------GGGG----HHHHHHH-HTTSEEEEEC
T ss_pred cceEEEE-CCEEEEEEEE-------CC---CCeEEEECCCCCC-----------HHHH----HHHHHHH-hcCCEEEEec
Confidence 4455665 6777875443 12 2578889996421 0111 1233444 5689999866
Q ss_pred CCCcCCCCCCCCc------hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCC
Q 005240 563 SIPIIGEGDKLPN------DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 636 (706)
Q Consensus 563 ~~~~~g~g~~~~~------~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~ 636 (706)
.+ |+|.+... ........+|+.+.++.+ +..++.++||||||.+++.++.++|+++++++..++.
T Consensus 62 ~~---G~G~s~~~~~~~~~~~~~~~~a~~~~~~~~~l------~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~ 132 (293)
T d1ehya_ 62 LR---GFGDSEKPDLNDLSKYSLDKAADDQAALLDAL------GIEKAYVVGHDFAAIVLHKFIRKYSDRVIKAAIFDPI 132 (293)
T ss_dssp CT---TSTTSCCCCTTCGGGGCHHHHHHHHHHHHHHT------TCCCEEEEEETHHHHHHHHHHHHTGGGEEEEEEECCS
T ss_pred CC---cccCCccccccccccccchhhhhHHHhhhhhc------CccccccccccccccchhcccccCccccceeeeeecc
Confidence 65 45544321 123445566665544432 3468999999999999999999999999999998875
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.93 E-value=6.6e-08 Score=98.80 Aligned_cols=219 Identities=9% Similarity=0.020 Sum_probs=108.1
Q ss_pred ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCC
Q 005240 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (706)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~ 254 (706)
..+..++|||||++|+..+.. ..|.+|+...++......... ..+..+.|++++.
T Consensus 122 ~~V~~l~~s~~~~~l~s~~~d-------------g~v~i~~~~~~~~~~~~~~h~------------~~v~~~~~~~~~~ 176 (388)
T d1erja_ 122 LYIRSVCFSPDGKFLATGAED-------------RLIRIWDIENRKIVMILQGHE------------QDIYSLDYFPSGD 176 (388)
T ss_dssp CBEEEEEECTTSSEEEEEETT-------------SCEEEEETTTTEEEEEECCCS------------SCEEEEEECTTSS
T ss_pred CCEEEEEECCCCCcceecccc-------------ccccccccccccccccccccc------------ccccccccccccc
Confidence 457889999999999765543 368999998665443332211 1134678999887
Q ss_pred ceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeeccccccccee-cCCCceEEEEeeccccceEEEEEcCCC
Q 005240 255 STLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSW-CDDSLALVNETWYKTSQTRTWLVCPGS 333 (706)
Q Consensus 255 ~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~w-spDg~~l~~~~~~~~~~~~l~~~d~~~ 333 (706)
. ++... ....+.++|. .+.................| .+|+..|+..+. ...|++++..+
T Consensus 177 ~-~~~~~------------~~~~i~~~d~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----d~~i~i~~~~~ 236 (388)
T d1erja_ 177 K-LVSGS------------GDRTVRIWDL---RTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSL----DRAVRVWDSET 236 (388)
T ss_dssp E-EEEEE------------TTSEEEEEET---TTTEEEEEEECSSCEEEEEECSTTCCEEEEEET----TSCEEEEETTT
T ss_pred c-ccccc------------cceeeeeeec---cccccccccccccccccccccCCCCCeEEEEcC----CCeEEEeeccc
Confidence 5 44321 1124777777 44333333333333334444 457787776542 22477777776
Q ss_pred CCCCceeeecCcccccc-cCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCCCCCCCCCCceeeeecCCCceeeeec
Q 005240 334 KDVAPRVLFDRVFENVY-SDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWE 412 (706)
Q Consensus 334 ~~~~~~~l~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~ 412 (706)
+. ............. .......+.|+|+|++|+.... ++ .+..+|+.++.......
T Consensus 237 ~~--~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~----d~-----------------~i~iwd~~~~~~~~~~~ 293 (388)
T d1erja_ 237 GF--LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL----DR-----------------SVKLWNLQNANNKSDSK 293 (388)
T ss_dssp CC--EEEEEC------CCCSSCEEEEEECTTSSEEEEEET----TS-----------------EEEEEEC----------
T ss_pred Cc--cceeeccccccccCCCCCEEEEEECCCCCEEEEEEC----CC-----------------cEEEEeccCCccccccc
Confidence 42 2211111111000 0111234778999998876542 12 23333333322111110
Q ss_pred ccch-hhhhhhhhhccCCCceecccCCCEEEEEEecCCCCcEEEEEECCCCcee
Q 005240 413 SNRE-KYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSS 465 (706)
Q Consensus 413 ~~~~-~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~p~~v~~~~~~~~~~~ 465 (706)
.... .................|+||++.|+....+ ..|++||+.+++..
T Consensus 294 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~d----g~i~vwd~~~~~~~ 343 (388)
T d1erja_ 294 TPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKD----RGVLFWDKKSGNPL 343 (388)
T ss_dssp -----CEEEEEECCSSCEEEEEECGGGCEEEEEETT----SEEEEEETTTCCEE
T ss_pred cccccceeeecccccceEEEEEECCCCCEEEEEeCC----CEEEEEECCCCcEE
Confidence 0000 0000000000112347899999877654333 35999999887643
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.91 E-value=1.9e-07 Score=91.56 Aligned_cols=256 Identities=16% Similarity=0.111 Sum_probs=142.8
Q ss_pred cceeEeecCCCCCCCCeee-eecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCc
Q 005240 5 TGIGIHRLLPDDSLGPEKE-VHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (706)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~-i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~ 83 (706)
..|.|+++.. ++... ++. ....+..+.|+|++..++.... ...+...+....+..........
T Consensus 39 g~i~iWd~~~----~~~~~~~~~--h~~~V~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 102 (317)
T d1vyhc1 39 ATIKVWDYET----GDFERTLKG--HTDSVQDISFDHSGKLLASCSA----------DMTIKLWDFQGFECIRTMHGHDH 102 (317)
T ss_dssp SCEEEEETTT----CCCCEEECC--CSSCEEEEEECTTSSEEEEEET----------TSCCCEEETTSSCEEECCCCCSS
T ss_pred CeEEEEECCC----CCEEEEEeC--CCCcEEEEeeeccccccccccc----------ccccccccccccccccccccccc
Confidence 3588899876 54433 332 1235788999999999987653 23444455555554443322111
Q ss_pred cccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEc
Q 005240 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (706)
Q Consensus 84 ~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~ 163 (706)
.+....|+|+++.|+....+ ..+.+++
T Consensus 103 ----~~~~~~~~~~~~~~~~~~~d-------------------------------------------------~~~~~~~ 129 (317)
T d1vyhc1 103 ----NVSSVSIMPNGDHIVSASRD-------------------------------------------------KTIKMWE 129 (317)
T ss_dssp ----CEEEEEECSSSSEEEEEETT-------------------------------------------------SEEEEEE
T ss_pred ----cceeeeccCCCceEEeeccC-------------------------------------------------cceeEee
Confidence 25678899999988765421 4566677
Q ss_pred c-CCC-ceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeE-EcccCCCCCCCCcccCc
Q 005240 164 L-DGT-AKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR-ELCDLPPAEDIPVCYNS 239 (706)
Q Consensus 164 l-~g~-~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~~~~~p~~~~~ 239 (706)
+ +++ ...+... .....++|+||++.|+..+.. ..+.+|++...+.. .+.....
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-------------~~v~~~~~~~~~~~~~~~~~~~---------- 186 (317)
T d1vyhc1 130 VQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSND-------------QTVRVWVVATKECKAELREHRH---------- 186 (317)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETT-------------SCEEEEETTTCCEEEEECCCSS----------
T ss_pred cccceeeeEEccCCCcceeeecccCCCEEEEEeCC-------------CeEEEEeeccceeeEEEecCCC----------
Confidence 7 443 3334333 567789999999998765543 36888888755433 3322111
Q ss_pred cCCCCcceeeecCCCceEEEEE--------eccCCCCccccCccceeeeecCCCCCCCCc-eEEeecccccccceecCCC
Q 005240 240 VREGMRSISWRADKPSTLYWVE--------AQDRGDANVEVSPRDIIYTQPAEPAEGEKP-EILHKLDLRFRSVSWCDDS 310 (706)
Q Consensus 240 ~~~g~~~~~~spdg~~~l~~~~--------~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~-~~l~~~~~~~~~~~wspDg 310 (706)
....+.|+|++.. +.... ....+...........+.+++. .+++. ..+......+..+.|+|++
T Consensus 187 ---~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~ 259 (317)
T d1vyhc1 187 ---VVECISWAPESSY-SSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDV---STGMCLMTLVGHDNWVRGVLFHSGG 259 (317)
T ss_dssp ---CEEEEEECCSCGG-GGGGGCCSCC-------CCEEEEEETTSEEEEEET---TTTEEEEEEECCSSCEEEEEECSSS
T ss_pred ---CceEEEEeecccc-ceeeccccceeeeeccCCceeEeccCCCEEEEEEC---CCCcEEEEEeCCCCCEEEEEECCCC
Confidence 1113344444321 00000 0000000000011234777777 44443 3344556778889999999
Q ss_pred ceEEEEeeccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEee
Q 005240 311 LALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 311 ~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 371 (706)
+.|+..+. ...|.++|+.++ ++...+...-.. ...+.|+|||++|+...
T Consensus 260 ~~l~s~~~----dg~i~iwd~~~~--~~~~~~~~h~~~------V~~~~~s~~~~~l~s~s 308 (317)
T d1vyhc1 260 KFILSCAD----DKTLRVWDYKNK--RCMKTLNAHEHF------VTSLDFHKTAPYVVTGS 308 (317)
T ss_dssp SCEEEEET----TTEEEEECCTTS--CCCEEEECCSSC------EEEEEECSSSSCEEEEE
T ss_pred CEEEEEEC----CCeEEEEECCCC--cEEEEEcCCCCC------EEEEEEcCCCCEEEEEe
Confidence 98887652 235777888774 333332221111 22377899999887654
|
| >d1r3da_ c.69.1.35 (A:) Hypothetical protein VC1974 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hypothetical protein VC1974 domain: Hypothetical protein VC1974 species: Vibrio cholerae [TaxId: 666]
Probab=98.90 E-value=5e-09 Score=100.41 Aligned_cols=102 Identities=15% Similarity=0.007 Sum_probs=62.5
Q ss_pred ceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHH
Q 005240 513 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEE 592 (706)
Q Consensus 513 ~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~ 592 (706)
-|+||++||.+.. ...| ...+..|++.||.|++++.+ |+|.+........ .+...+...
T Consensus 16 ~P~ivllHG~~~~-----------~~~~----~~~~~~L~~~g~~vi~~Dl~---G~G~s~~~~~~~~---~~~~~~~~~ 74 (264)
T d1r3da_ 16 TPLVVLVHGLLGS-----------GADW----QPVLSHLARTQCAALTLDLP---GHGTNPERHCDNF---AEAVEMIEQ 74 (264)
T ss_dssp BCEEEEECCTTCC-----------GGGG----HHHHHHHTTSSCEEEEECCT---TCSSCC----------CHHHHHHHH
T ss_pred CCeEEEeCCCCCC-----------HHHH----HHHHHHHHhCCCEEEEEecc---ccccccccccccc---chhhhhhhh
Confidence 4789999996421 1111 24456677889999996665 5565533321111 111112222
Q ss_pred HHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccC
Q 005240 593 VVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSG 635 (706)
Q Consensus 593 l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~ 635 (706)
+.........++.++|||+||.+++.++.++|+.+..++...+
T Consensus 75 ~~~~~~~~~~~~~lvGhS~Gg~ia~~~a~~~~~~~~~~~~~~~ 117 (264)
T d1r3da_ 75 TVQAHVTSEVPVILVGYSLGGRLIMHGLAQGAFSRLNLRGAII 117 (264)
T ss_dssp HHHTTCCTTSEEEEEEETHHHHHHHHHHHHTTTTTSEEEEEEE
T ss_pred cccccccccCceeeeeecchHHHHHHHHHhCchhccccccccc
Confidence 2233334557899999999999999999999998777665543
|
| >d1llfa_ c.69.1.17 (A:) Type-B carboxylesterase/lipase {Candida cylindracea, cholesterol esterase [TaxId: 44322]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Type-B carboxylesterase/lipase species: Candida cylindracea, cholesterol esterase [TaxId: 44322]
Probab=98.82 E-value=3.7e-09 Score=113.86 Aligned_cols=137 Identities=18% Similarity=0.282 Sum_probs=89.4
Q ss_pred ccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCC-cC
Q 005240 489 RKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIP-II 567 (706)
Q Consensus 489 ~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~-~~ 567 (706)
++|...+. |+.|+...+.+ ++|||||+|||.+..|+. ..+..........++..+++|+..|||- .-
T Consensus 94 sEDCL~Ln--I~~P~~~~~~~--~~PVlv~ihGG~f~~g~~--------~~~~~~~~~~~~~~~~~~vIvVt~nYRLg~~ 161 (534)
T d1llfa_ 94 SEDCLTIN--VVRPPGTKAGA--NLPVMLWIFGGGFEIGSP--------TIFPPAQMVTKSVLMGKPIIHVAVNYRVASW 161 (534)
T ss_dssp CSCCCEEE--EEECTTCCTTC--CEEEEEEECCSTTTSCCG--------GGSCCHHHHHHHHHTTCCCEEEEECCCCHHH
T ss_pred CCcCCEEE--EEECCCCCCCC--CCeEEEEECCCccccCCC--------CCCCchhccchhhhccCCeEEEEeecCCCcc
Confidence 45775554 88998654443 599999999998643221 1121111111223446899999888873 32
Q ss_pred CCCCCC--CchhhHHHHHHHHHHHHHHHHHc--CC-CCCCcEEEEEechHHHHHHHHHHhC-----C---CceeEEEecc
Q 005240 568 GEGDKL--PNDRFVEQLVSSAEAAVEEVVRR--GV-ADPSRIAVGGHSYGAFMTAHLLAHA-----P---HLFCCGIARS 634 (706)
Q Consensus 568 g~g~~~--~~~~~~~~~~~D~~~~~~~l~~~--~~-id~~~i~i~G~S~GG~~a~~~~~~~-----p---~~~~a~v~~~ 634 (706)
|+=... .....++.-+.|++.|++|+++. .| -||+||.|+|+|.||.++...+... | .+|+.+|+.+
T Consensus 162 GFl~~~~~~~~~~gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SaGa~~v~~~l~~~~~~~sp~s~gLF~raI~qS 241 (534)
T d1llfa_ 162 GFLAGDDIKAEGSGNAGLKDQRLGMQWVADNIAGFGGDPSKVTIFGESAGSMSVLCHLIWNDGDNTYKGKPLFRAGIMQS 241 (534)
T ss_dssp HHCCSHHHHHHTCTTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGGCCEETTEESCSEEEEES
T ss_pred cccCCcccccccccccchhHHHHHHHHHHhhhhhhccCCcceeeeeecchHHHHHHHHhccccccccchhhhhhhhhhcc
Confidence 331110 00112345689999999999985 33 7999999999999999987776521 1 2699999999
Q ss_pred CCC
Q 005240 635 GSY 637 (706)
Q Consensus 635 ~~~ 637 (706)
|..
T Consensus 242 Gs~ 244 (534)
T d1llfa_ 242 GAM 244 (534)
T ss_dssp CCS
T ss_pred Ccc
Confidence 854
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.81 E-value=1.3e-06 Score=86.80 Aligned_cols=205 Identities=11% Similarity=0.020 Sum_probs=113.9
Q ss_pred cccceeeCC--CCCeEEEEeeccccccccCCceeEEEEEcCCCce-eecccC---CCccccccccceEEecCCcEEEEEe
Q 005240 32 KINFVSWSP--DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-KPLFES---PDICLNAVFGSFVWVNNSTLLIFTI 105 (706)
Q Consensus 32 ~~~~~~~SP--DG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~-~~lt~~---~~~~~~~~~~~~~wSpDg~~l~~~~ 105 (706)
.+..++||| ||++||-... ++.-.|| +...++. ..+... ........+..+.|++||+.|+..+
T Consensus 65 ~v~~v~fsP~~~g~~lasgs~--------Dg~i~iW--d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 134 (325)
T d1pgua1 65 VVTTVKFSPIKGSQYLCSGDE--------SGKVIVW--GWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVG 134 (325)
T ss_dssp CEEEEEECSSTTCCEEEEEET--------TSEEEEE--EEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred CEEEEEEeeCCCCCEEEEEeC--------CCCEEEe--eecCCcceeeeecccccccccccCcEEEEEECCCCCccceee
Confidence 578899998 5677766532 4445555 4332221 111000 0000111267889999999988764
Q ss_pred cCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CC-CceecCCC-ceEeeeee
Q 005240 106 PSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTP-AVYTAVEP 182 (706)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g-~~~~lt~~-~~~~~~~~ 182 (706)
... . ..+.+++. +| ....+... ..+..++|
T Consensus 135 ~~~-~----------------------------------------------~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 167 (325)
T d1pgua1 135 EGR-D----------------------------------------------NFGVFISWDSGNSLGEVSGHSQRINACHL 167 (325)
T ss_dssp CCS-S----------------------------------------------CSEEEEETTTCCEEEECCSCSSCEEEEEE
T ss_pred ccc-c----------------------------------------------ceEEEEeecccccceeeeecccccccccc
Confidence 210 0 22333344 34 33444433 56788999
Q ss_pred CCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEE-cccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEE
Q 005240 183 SPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRE-LCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVE 261 (706)
Q Consensus 183 SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~ 261 (706)
+|+++.++++.... ..+.+|++...+... +....... ..+..++|+||+.. ++...
T Consensus 168 ~~~~~~~~~~~~~d------------~~v~~~d~~~~~~~~~~~~~~~~~----------~~v~~v~~~pd~~~-~l~s~ 224 (325)
T d1pgua1 168 KQSRPMRSMTVGDD------------GSVVFYQGPPFKFSASDRTHHKQG----------SFVRDVEFSPDSGE-FVITV 224 (325)
T ss_dssp CSSSSCEEEEEETT------------TEEEEEETTTBEEEEEECSSSCTT----------CCEEEEEECSTTCC-EEEEE
T ss_pred cccccceEEEeecc------------cccccccccccccceecccccCCC----------CccEEeeeccccce-ecccc
Confidence 99999877655442 368899987554332 22221111 12447899998765 33232
Q ss_pred eccCCCCccccCccceeeeecCCCCCCCCc-eEEeecccccccceec---CCCceEEEEeeccccceEEEEEcCCCC
Q 005240 262 AQDRGDANVEVSPRDIIYTQPAEPAEGEKP-EILHKLDLRFRSVSWC---DDSLALVNETWYKTSQTRTWLVCPGSK 334 (706)
Q Consensus 262 ~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~-~~l~~~~~~~~~~~ws---pDg~~l~~~~~~~~~~~~l~~~d~~~~ 334 (706)
..+ ..|.+||. ..++. ..+......+..+.|+ |||++|+..+.+ + .|.++|+.++
T Consensus 225 ~~d-----------~~i~iwd~---~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D--~--~i~iwd~~~~ 283 (325)
T d1pgua1 225 GSD-----------RKISCFDG---KSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGAD--A--TIRVWDVTTS 283 (325)
T ss_dssp ETT-----------CCEEEEET---TTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETT--S--EEEEEETTTT
T ss_pred ccc-----------cceeeeee---ccccccccccccccccccceeeeeccCCCEEEEEeCC--C--eEEEEECCCC
Confidence 111 24778887 44544 3344445556666666 789988876522 2 3556677763
|
| >d2h7ca1 c.69.1.1 (A:1021-1553) Mammalian carboxylesterase (liver carboxylesterase I) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Mammalian carboxylesterase (liver carboxylesterase I) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.80 E-value=6.4e-09 Score=112.13 Aligned_cols=133 Identities=19% Similarity=0.181 Sum_probs=92.0
Q ss_pred ccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCC-CcC
Q 005240 489 RKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSI-PII 567 (706)
Q Consensus 489 ~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~-~~~ 567 (706)
++|...+. ||.|.+...+ .++||+|++|||.+..|+. ..+ .-..+.+..+.+|+..||| |.-
T Consensus 93 sEDCL~Ln--I~~P~~~~~~--~~lPV~v~ihGG~~~~gs~--------~~~-----~~~~~~~~~~vIvVt~nYRLg~~ 155 (532)
T d2h7ca1 93 SEDCLYLN--IYTPADLTKK--NRLPVMVWIHGGGLMVGAA--------STY-----DGLALAAHENVVVVTIQYRLGIW 155 (532)
T ss_dssp ESCCCEEE--EEECSCTTSC--CCEEEEEEECCSTTTSCCS--------TTS-----CCHHHHHHHTCEEEEECCCCHHH
T ss_pred CCcCCEEE--EEECCCCCCC--CCcEEEEEEeCCccccccc--------ccC-----CchhhhhcCceEEEEEeeccCCC
Confidence 46775555 7889764333 3599999999997753221 111 1133456789999988886 333
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHHHHHHc--CC-CCCCcEEEEEechHHHHHHHHHHh--CCCceeEEEeccCCCC
Q 005240 568 GEGDKLPNDRFVEQLVSSAEAAVEEVVRR--GV-ADPSRIAVGGHSYGAFMTAHLLAH--APHLFCCGIARSGSYN 638 (706)
Q Consensus 568 g~g~~~~~~~~~~~~~~D~~~~~~~l~~~--~~-id~~~i~i~G~S~GG~~a~~~~~~--~p~~~~a~v~~~~~~d 638 (706)
|+-.......-++.-+.|++.|++|+++. .| -||+||-|+|+|.||..+..++.. ...+|+.+|+.+|...
T Consensus 156 GFl~~~~~~~~gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~~LF~raI~~SG~~~ 231 (532)
T d2h7ca1 156 GFFSTGDEHSRGNWGHLDQVAALRWVQDNIASFGGNPGSVTIFGESAGGESVSVLVLSPLAKNLFHRAISESGVAL 231 (532)
T ss_dssp HHCCCSSTTCCCCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTSCSEEEEESCCTT
T ss_pred ccccccccccccccccHHHHHHHHHHHHHHHHhcCCcceeeeeccccccchHHHHHhhhhccCcchhhhhhccccc
Confidence 43211111122345689999999999985 34 699999999999999999888764 3358999999998653
|
| >d1wm1a_ c.69.1.7 (A:) Proline aminopeptidase {Serratia marcescens [TaxId: 615]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Proline iminopeptidase-like domain: Proline aminopeptidase species: Serratia marcescens [TaxId: 615]
Probab=98.78 E-value=2.4e-08 Score=98.25 Aligned_cols=121 Identities=18% Similarity=0.073 Sum_probs=79.0
Q ss_pred EEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcC
Q 005240 483 EMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGP 562 (706)
Q Consensus 483 ~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~ 562 (706)
+.-.++..||..|+...+-+++ -|.||++||.+..+ ..+ .....+++.||.|++++
T Consensus 12 ~~~~v~~~dG~~i~y~~~G~~~--------g~pvvllHG~~~~~-----------~~w-----~~~~~~l~~~~~vi~~D 67 (313)
T d1wm1a_ 12 DSGWLDTGDGHRIYWELSGNPN--------GKPAVFIHGGPGGG-----------ISP-----HHRQLFDPERYKVLLFD 67 (313)
T ss_dssp EEEEEECSSSCEEEEEEEECTT--------SEEEEEECCTTTCC-----------CCG-----GGGGGSCTTTEEEEEEC
T ss_pred cCCEEEeCCCcEEEEEEecCCC--------CCeEEEECCCCCcc-----------cch-----HHHHHHhhcCCEEEEEe
Confidence 3444566799999988876543 14577789975311 111 11122346799999966
Q ss_pred CCCcCCCCCCCCch----hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCC
Q 005240 563 SIPIIGEGDKLPND----RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 636 (706)
Q Consensus 563 ~~~~~g~g~~~~~~----~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~ 636 (706)
-+ |+|.+.... .......+|+...++. .+..++.++|||+||.++..++...|++++..+...+.
T Consensus 68 ~r---G~G~S~~~~~~~~~~~~~~~~d~~~~~~~------~~~~~~~~vg~s~g~~~~~~~a~~~~~~v~~~v~~~~~ 136 (313)
T d1wm1a_ 68 QR---GCGRSRPHASLDNNTTWHLVADIERLREM------AGVEQWLVFGGSWGSTLALAYAQTHPERVSEMVLRGIF 136 (313)
T ss_dssp CT---TSTTCBSTTCCTTCSHHHHHHHHHHHHHH------TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred CC---CcccccccccccccchhhHHHHHHhhhhc------cCCCcceeEeeecCCchhhHHHHHHhhhheeeeecccc
Confidence 65 556554321 1233344444443332 24578999999999999999999999999999888754
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=98.75 E-value=3e-06 Score=74.12 Aligned_cols=225 Identities=16% Similarity=0.150 Sum_probs=136.0
Q ss_pred CCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCC
Q 005240 41 DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPL 120 (706)
Q Consensus 41 DG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~ 120 (706)
|+..|.|.... .+..++++++ +++..+||..+-. ....=.+.=.+|.|..+..++.
T Consensus 24 ~~d~ll~~~~s-------eG~vni~~l~--g~~~vkLtkePI~------~~~~Pk~~ldfi~f~RDV~kGk--------- 79 (313)
T d2hu7a1 24 DGDKLLVVGFS-------EGSVNAYLYD--GGETVKLNREPIN------SVLDPHYGVGRVILVRDVSKGA--------- 79 (313)
T ss_dssp TTTEEEEEEEE-------TTEEEEEEES--SSSCEECCSSCCS------EECEECTTBSEEEEEEECSTTS---------
T ss_pred cCCcEEEEEec-------cceEEEEEEe--CCEEEEEeccccc------CcCCCccCcceEEEEeehhcCc---------
Confidence 45556666542 6778888874 8999999866532 0111112224577765433221
Q ss_pred CCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccC--CCceecCCCceEeeeeeCCCCcEEEEEeeccCc
Q 005240 121 GPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD--GTAKDFGTPAVYTAVEPSPDQKYVLITSMHRPY 198 (706)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~--g~~~~lt~~~~~~~~~~SpDG~~i~~~~~~~~~ 198 (706)
....||.+++. |+..++.....++-++..-|++.|+|+....
T Consensus 80 ----------------------------------E~Hai~~~Nlk~~GEE~~i~spk~vRI~S~~yddk~vvF~Gase-- 123 (313)
T d2hu7a1 80 ----------------------------------EQHALFKVNTSRPGEEQRLEAVKPMRILSGVDTGEAVVFTGATE-- 123 (313)
T ss_dssp ----------------------------------CCEEEEEEETTSTTCEEECTTSCSBEEEEEEECSSCEEEEEECS--
T ss_pred ----------------------------------ceeeEEEEccCCCCeeeEecCCceEEEEEeeecCceEEEecccC--
Confidence 12679999997 8888887764455555567999999987653
Q ss_pred ccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecC--CCceEEEEEeccCCCCccccCccc
Q 005240 199 SYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRAD--KPSTLYWVEAQDRGDANVEVSPRD 276 (706)
Q Consensus 199 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spd--g~~~l~~~~~~~~~~~~~~~~~~~ 276 (706)
....+|-+++++.++|+..+.. .|--| ++. |+=..... + .+.
T Consensus 124 ----------d~~~LYviegGklrkL~~vPpF-----------------sFVtDI~~d~-I~G~g~~~-g-------~~~ 167 (313)
T d2hu7a1 124 ----------DRVALYALDGGGLRELARLPGF-----------------GFVSDIRGDL-IAGLGFFG-G-------GRV 167 (313)
T ss_dssp ----------SCEEEEEEETTEEEEEEEESSC-----------------EEEEEEETTE-EEEEEEEE-T-------TEE
T ss_pred ----------CceEEEEEeCCceeeeccCCCc-----------------ceEEeccCCe-EEEEeeec-C-------Ccc
Confidence 4678888899999999887621 22222 222 21111111 1 111
Q ss_pred eeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeeccc-cceEEEEEcCCCCCCCceeeecCcccccccCCCC
Q 005240 277 IIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKT-SQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGS 355 (706)
Q Consensus 277 ~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~-~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~ 355 (706)
.+|+.|+ .+|.++.++...+.+..+..+++.+. + ++.++ +...+..+|+.+++-+-..+.+.++... ..
T Consensus 168 sfF~adl---~SG~lri~tpkeGS~~~ay~~~gnKV-~--sdyEt~gEsywit~D~~s~~yerve~P~kd~~sy----~p 237 (313)
T d2hu7a1 168 SLFTSNL---SSGGLRVFDSGEGSFSSASISPGMKV-T--AGLETAREARLVTVDPRDGSVEDLELPSKDFSSY----RP 237 (313)
T ss_dssp EEEEEET---TTEEEEEECCSSEEEEEEEECTTSCE-E--EEEEESSCEEEEEECTTTCCEEECCCSSCHHHHH----CC
T ss_pred eEEEEec---ccCCEEEecCCCCcccceeEccCcee-e--eccCCCCceEEEEEecccCceeeeecCcccceee----cc
Confidence 3788888 78899999998999999999999986 2 23322 3444446788875433223323322111 11
Q ss_pred CceE---eccCCCEEEEee
Q 005240 356 PMMT---RTSTGTNVIAKI 371 (706)
Q Consensus 356 ~~~~---~s~dg~~l~~~~ 371 (706)
.++. ..||++.++...
T Consensus 238 ~~I~~~~Y~Pdd~L~iiak 256 (313)
T d2hu7a1 238 TAITWLGYLPDGRLAVVAR 256 (313)
T ss_dssp SEEEEEEECTTSCEEEEEE
T ss_pred eEEEeeeeCCCCcEEEEEe
Confidence 2234 479998754443
|
| >d1qe3a_ c.69.1.1 (A:) Thermophilic para-nitrobenzyl esterase (PNB esterase) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Thermophilic para-nitrobenzyl esterase (PNB esterase) species: Bacillus subtilis [TaxId: 1423]
Probab=98.75 E-value=6.8e-09 Score=110.33 Aligned_cols=132 Identities=20% Similarity=0.210 Sum_probs=88.8
Q ss_pred ccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCC-CcC
Q 005240 489 RKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSI-PII 567 (706)
Q Consensus 489 ~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~-~~~ 567 (706)
++|..-| -||.|.. +++ ++||+||+|||.+..|++.... +......++.+++|+..||| |.-
T Consensus 78 sEDCL~l--ni~~P~~--~~~--~lPV~v~ihGG~~~~g~~~~~~-----------~~~~~~~~~~~vVvV~~nYRlg~~ 140 (483)
T d1qe3a_ 78 SEDCLYV--NVFAPDT--PSQ--NLPVMVWIHGGAFYLGAGSEPL-----------YDGSKLAAQGEVIVVTLNYRLGPF 140 (483)
T ss_dssp CSCCCEE--EEEEECS--SCC--SEEEEEEECCSTTTSCCTTSGG-----------GCCHHHHHHHTCEEEEECCCCHHH
T ss_pred CCcCCEE--EEEECCC--CCC--CCceEEEEeecccccCCccccc-----------cccccccccCceEEEeecccccch
Confidence 4566444 4788975 222 4999999999976532221111 11223344567999887776 333
Q ss_pred CCCC--CCCchhhHHHHHHHHHHHHHHHHHc--CC-CCCCcEEEEEechHHHHHHHHHHhC--CCceeEEEeccCCC
Q 005240 568 GEGD--KLPNDRFVEQLVSSAEAAVEEVVRR--GV-ADPSRIAVGGHSYGAFMTAHLLAHA--PHLFCCGIARSGSY 637 (706)
Q Consensus 568 g~g~--~~~~~~~~~~~~~D~~~~~~~l~~~--~~-id~~~i~i~G~S~GG~~a~~~~~~~--p~~~~a~v~~~~~~ 637 (706)
|+=. +......++..+.|++.|++|+++. .| -||+||.|+|+|.||..+.+++... ..+|+.+|+.+|..
T Consensus 141 GFl~~~~~~~~~~gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~gLF~raI~~SGs~ 217 (483)
T d1qe3a_ 141 GFLHLSSFDEAYSDNLGLLDQAAALKWVRENISAFGGDPDNVTVFGESAGGMSIAALLAMPAAKGLFQKAIMESGAS 217 (483)
T ss_dssp HSCCCTTTCTTSCSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHTTCGGGTTSCSEEEEESCCC
T ss_pred hhccccccccccccccccHHHHHHHHHHHHHHHHcCCCcccceeeccccccchhhhhhcccccCCcceeeccccCCc
Confidence 4311 1111223456689999999999985 33 6999999999999999998887543 25899999999864
|
| >d1thga_ c.69.1.17 (A:) Type-B carboxylesterase/lipase {Fungus (Geotrichum candidum), ATCC 34614 [TaxId: 27317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Type-B carboxylesterase/lipase species: Fungus (Geotrichum candidum), ATCC 34614 [TaxId: 27317]
Probab=98.75 E-value=4.4e-09 Score=113.42 Aligned_cols=136 Identities=20% Similarity=0.275 Sum_probs=90.3
Q ss_pred ccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHH-HCCeEEEEcCCC-Cc
Q 005240 489 RKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFL-ARRFAVLAGPSI-PI 566 (706)
Q Consensus 489 ~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~G~~v~~~~~~-~~ 566 (706)
++|...+. |+.|.+..+++ ++||+||+|||.+..|+.. .+.. .......++ ..+++|+..||| |.
T Consensus 102 sEDCL~Ln--I~~P~~~~~~~--~lPV~V~ihGG~f~~G~~~--------~~~~-~~~~~~~~~~~~~vIvVt~nYRlg~ 168 (544)
T d1thga_ 102 NEDCLYLN--VFRPAGTKPDA--KLPVMVWIYGGAFVYGSSA--------AYPG-NSYVKESINMGQPVVFVSINYRTGP 168 (544)
T ss_dssp CSCCCEEE--EEEETTCCTTC--CEEEEEEECCCTTCCSGGG--------GCCS-HHHHHHHHHTTCCCEEEEECCCCHH
T ss_pred CCcCCEEE--EEECCCCCCCC--CCCEEEEeccCCCccCCCc--------cCCc-chhhhhhhhccCCeEEEeccccccc
Confidence 35775555 77898755544 5999999999987543221 1110 011122343 578888887776 33
Q ss_pred CCCCCCCC--chhhHHHHHHHHHHHHHHHHHc--CC-CCCCcEEEEEechHHHHHHHHHHhC--------CCceeEEEec
Q 005240 567 IGEGDKLP--NDRFVEQLVSSAEAAVEEVVRR--GV-ADPSRIAVGGHSYGAFMTAHLLAHA--------PHLFCCGIAR 633 (706)
Q Consensus 567 ~g~g~~~~--~~~~~~~~~~D~~~~~~~l~~~--~~-id~~~i~i~G~S~GG~~a~~~~~~~--------p~~~~a~v~~ 633 (706)
-|+-.... ...-++.-+.|++.|++|+++. .| -||++|-|+|+|.||.++.++++.. ..+|+.+|+.
T Consensus 169 ~Gfl~~~~~~~~~~gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SaGa~~v~~~l~sp~~~~~~~s~gLF~raI~q 248 (544)
T d1thga_ 169 FGFLGGDAITAEGNTNAGLHDQRKGLEWVSDNIANFGGDPDKVMIFGESAGAMSVAHQLIAYGGDNTYNGKKLFHSAILQ 248 (544)
T ss_dssp HHHCCSHHHHHHTCTTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGTCCEETTEESCSEEEEE
T ss_pred ccccCCchhhccccccHHHHHhhhhhhhhhhhhcccccCCCceEeeeeccchHHHHHHHhCcCCCcccchhhhhcccccc
Confidence 34311100 0112456789999999999985 33 6999999999999999998887642 2489999999
Q ss_pred cCCC
Q 005240 634 SGSY 637 (706)
Q Consensus 634 ~~~~ 637 (706)
+|..
T Consensus 249 SG~~ 252 (544)
T d1thga_ 249 SGGP 252 (544)
T ss_dssp SCCC
T ss_pred cccc
Confidence 9853
|
| >d1pjaa_ c.69.1.13 (A:) Palmitoyl protein thioesterase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterases domain: Palmitoyl protein thioesterase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.72 E-value=2.8e-08 Score=95.52 Aligned_cols=81 Identities=12% Similarity=-0.021 Sum_probs=55.0
Q ss_pred hHHHHHHH--CCeEEEEcCCCCcCCCCCCCCchh-hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHh
Q 005240 546 TSSLIFLA--RRFAVLAGPSIPIIGEGDKLPNDR-FVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAH 622 (706)
Q Consensus 546 ~~~~~l~~--~G~~v~~~~~~~~~g~g~~~~~~~-~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~ 622 (706)
.....|.+ .||.|++.+-+ |+|.+..... ..+...+|+.+ +.+. +. +++.++||||||.+++.++.+
T Consensus 20 ~~~~~l~~~~~~~~v~~~d~~---G~g~S~~~~~~~~~~~~~~l~~----~l~~--l~-~~~~lvGhS~GG~ia~~~a~~ 89 (268)
T d1pjaa_ 20 HLLEYINETHPGTVVTVLDLF---DGRESLRPLWEQVQGFREAVVP----IMAK--AP-QGVHLICYSQGGLVCRALLSV 89 (268)
T ss_dssp HHHHHHHHHSTTCCEEECCSS---CSGGGGSCHHHHHHHHHHHHHH----HHHH--CT-TCEEEEEETHHHHHHHHHHHH
T ss_pred HHHHHHHhhCCCeEEEEeCCC---CCCCCCCccccCHHHHHHHHHH----HHhc--cC-CeEEEEccccHHHHHHHHHHH
Confidence 34556665 48999985443 5666654432 23333444433 3332 23 789999999999999999999
Q ss_pred CCC-ceeEEEeccCC
Q 005240 623 APH-LFCCGIARSGS 636 (706)
Q Consensus 623 ~p~-~~~a~v~~~~~ 636 (706)
+|+ +++.++..++.
T Consensus 90 ~p~~~v~~lvl~~~~ 104 (268)
T d1pjaa_ 90 MDDHNVDSFISLSSP 104 (268)
T ss_dssp CTTCCEEEEEEESCC
T ss_pred CCccccceEEEECCC
Confidence 998 69988887763
|
| >d2bcea_ c.69.1.1 (A:) Bile-salt activated lipase (cholesterol esterase) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Bile-salt activated lipase (cholesterol esterase) species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.69 E-value=1.3e-08 Score=110.63 Aligned_cols=141 Identities=18% Similarity=0.165 Sum_probs=89.4
Q ss_pred ccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHH-CCeEEEEcCCC-Cc
Q 005240 489 RKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA-RRFAVLAGPSI-PI 566 (706)
Q Consensus 489 ~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~G~~v~~~~~~-~~ 566 (706)
++|..-+. ||.|...... ..++||+||+|||.+..|+..... +..........|++ .+.+|+..||| |.
T Consensus 77 sEDCL~LN--I~~P~~~~~~-~~~lPV~V~iHGG~f~~Gs~~~~~------~~~~~~~dg~~la~~~~vIvVt~nYRlg~ 147 (579)
T d2bcea_ 77 NEDCLYLN--IWVPQGRKEV-SHDLPVMIWIYGGAFLMGASQGAN------FLSNYLYDGEEIATRGNVIVVTFNYRVGP 147 (579)
T ss_dssp CSCCCEEE--EEEEECSSSC-CCSEEEEEECCCCSEEEC-------------CTTGGGCCHHHHHHHTCEEEEECCCCHH
T ss_pred CCcCCEEE--EEECCCCCCC-CCCCcEEEEECCCcccCCCCCCcc------cCCccccchhhhhccCCEEEEeecccccc
Confidence 46775555 7788653221 125999999999976432221111 10001111244555 46888887776 43
Q ss_pred CCCCCCCCchhhHHHHHHHHHHHHHHHHHc--CC-CCCCcEEEEEechHHHHHHHHHHh--CCCceeEEEeccCCCC
Q 005240 567 IGEGDKLPNDRFVEQLVSSAEAAVEEVVRR--GV-ADPSRIAVGGHSYGAFMTAHLLAH--APHLFCCGIARSGSYN 638 (706)
Q Consensus 567 ~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~--~~-id~~~i~i~G~S~GG~~a~~~~~~--~p~~~~a~v~~~~~~d 638 (706)
-|+-.......-++.-+.|++.|++|+++. .| -||+||-|+|+|.||..+..++.. ...+|+.+|+.+|...
T Consensus 148 ~GFl~~~~~~~~gN~Gl~Dq~~AL~WV~~nI~~FGGDP~~VTl~G~SAGa~sv~~~l~sp~~~gLF~raI~~SGs~~ 224 (579)
T d2bcea_ 148 LGFLSTGDSNLPGNYGLWDQHMAIAWVKRNIEAFGGDPDQITLFGESAGGASVSLQTLSPYNKGLIKRAISQSGVGL 224 (579)
T ss_dssp HHHCCCSSTTCCCCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTTCSEEEEESCCTT
T ss_pred cccccccccCCCccchhhHHHHHHHHHhhhhhhhccCcCceEeeecccccchhhhhhhhhcccCccccceeccCCcc
Confidence 343211112223456689999999999985 33 699999999999999999877754 2468999999998643
|
| >d2ha2a1 c.69.1.1 (A:1-542) Acetylcholinesterase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Acetylcholinesterase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.69 E-value=1.2e-08 Score=110.08 Aligned_cols=132 Identities=18% Similarity=0.198 Sum_probs=88.0
Q ss_pred ccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHH-HHCCeEEEEcCCC-Cc
Q 005240 489 RKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIF-LARRFAVLAGPSI-PI 566 (706)
Q Consensus 489 ~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~G~~v~~~~~~-~~ 566 (706)
++|...+. |++|.. .+.+ ++||+||+|||.+..|+..... .....+ ++.+.+|+..||| |.
T Consensus 93 sEDCL~Ln--I~~P~~-~~~~--~lPV~v~ihGG~~~~gs~~~~~------------~~~~~~~~~~~vvvVt~nYRlg~ 155 (542)
T d2ha2a1 93 SEDCLYLN--VWTPYP-RPAS--PTPVLIWIYGGGFYSGAASLDV------------YDGRFLAQVEGAVLVSMNYRVGT 155 (542)
T ss_dssp ESCCCEEE--EEEESS-CCSS--CEEEEEEECCSTTTCCCTTSGG------------GCTHHHHHHHCCEEEEECCCCHH
T ss_pred CCcCCEEE--EEecCC-CCCC--CCcEEEEEEECccccccCcccc------------cCchhhhhhccceeEeeeeeccc
Confidence 35775555 778875 2222 4999999999976432221111 112333 4578999887886 33
Q ss_pred CCCCCCC-CchhhHHHHHHHHHHHHHHHHHc--CC-CCCCcEEEEEechHHHHHHHHHHhC--CCceeEEEeccCCC
Q 005240 567 IGEGDKL-PNDRFVEQLVSSAEAAVEEVVRR--GV-ADPSRIAVGGHSYGAFMTAHLLAHA--PHLFCCGIARSGSY 637 (706)
Q Consensus 567 ~g~g~~~-~~~~~~~~~~~D~~~~~~~l~~~--~~-id~~~i~i~G~S~GG~~a~~~~~~~--p~~~~a~v~~~~~~ 637 (706)
-|+-... .....++.-+.|++.|++|+++. .| -||++|-|+|+|.||..+..++... ..+|..+|+.+|..
T Consensus 156 ~Gfl~~~~~~~~~gN~Gl~Dq~~AL~WV~~nI~~FGGDP~~VTi~G~SAGa~sv~~ll~sp~~~~LF~~aI~~SG~~ 232 (542)
T d2ha2a1 156 FGFLALPGSREAPGNVGLLDQRLALQWVQENIAAFGGDPMSVTLFGESAGAASVGMHILSLPSRSLFHRAVLQSGTP 232 (542)
T ss_dssp HHHCCCTTCSSCCSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHSHHHHTTCSEEEEESCCS
T ss_pred eeeecccccccCCCcCCcccHHHHHHHHHHHHHHhhcCccccccccccccccchhhhhhhhhhhHHhhhheeecccc
Confidence 3431111 11223445688999999999985 33 6999999999999999998887643 24899999998854
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.68 E-value=1.2e-06 Score=86.87 Aligned_cols=130 Identities=16% Similarity=0.135 Sum_probs=83.6
Q ss_pred ceEEEEcc-CCC-ceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCC
Q 005240 157 AQLVLGSL-DGT-AKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDI 233 (706)
Q Consensus 157 ~~l~~~~l-~g~-~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~ 233 (706)
..+.++|+ +++ ...+... ..+..++|+|||+.|+..+.. ..+.+|++...............
T Consensus 206 ~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d-------------~~i~~~~~~~~~~~~~~~~~~~~-- 270 (340)
T d1tbga_ 206 ASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDD-------------ATCRLFDLRADQELMTYSHDNII-- 270 (340)
T ss_dssp TEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT-------------SCEEEEETTTTEEEEEECCTTCC--
T ss_pred ceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCC-------------CeEEEEeeccccccccccccccc--
Confidence 56888888 553 3344444 678899999999998766543 37899999866543332221110
Q ss_pred CcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCc-eEEeecccccccceecCCCce
Q 005240 234 PVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP-EILHKLDLRFRSVSWCDDSLA 312 (706)
Q Consensus 234 p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~-~~l~~~~~~~~~~~wspDg~~ 312 (706)
.++..+.|+|+++. |+.. .. .+.|++||+ .+++. ..+..+...+..+.|+||++.
T Consensus 271 --------~~i~~~~~s~~~~~-l~~g-~~-----------dg~i~iwd~---~~~~~~~~~~~H~~~V~~l~~s~d~~~ 326 (340)
T d1tbga_ 271 --------CGITSVSFSKSGRL-LLAG-YD-----------DFNCNVWDA---LKADRAGVLAGHDNRVSCLGVTDDGMA 326 (340)
T ss_dssp --------SCEEEEEECSSSCE-EEEE-ET-----------TSCEEEEET---TTCCEEEEECCCSSCEEEEEECTTSSC
T ss_pred --------CceEEEEECCCCCE-EEEE-EC-----------CCEEEEEEC---CCCcEEEEEcCCCCCEEEEEEeCCCCE
Confidence 22447899999985 4422 11 124788888 44444 345556778899999999999
Q ss_pred EEEEeeccccceEEE
Q 005240 313 LVNETWYKTSQTRTW 327 (706)
Q Consensus 313 l~~~~~~~~~~~~l~ 327 (706)
|+..+. ++..+||
T Consensus 327 l~s~s~--Dg~v~iW 339 (340)
T d1tbga_ 327 VATGSW--DSFLKIW 339 (340)
T ss_dssp EEEEET--TSCEEEE
T ss_pred EEEEcc--CCEEEEe
Confidence 887652 2344444
|
| >d1ea5a_ c.69.1.1 (A:) Acetylcholinesterase {Pacific electric ray (Torpedo californica) [TaxId: 7787]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Acetylcholinesterase species: Pacific electric ray (Torpedo californica) [TaxId: 7787]
Probab=98.68 E-value=1.4e-08 Score=109.40 Aligned_cols=133 Identities=17% Similarity=0.190 Sum_probs=89.6
Q ss_pred ccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCC-CcC
Q 005240 489 RKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSI-PII 567 (706)
Q Consensus 489 ~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~-~~~ 567 (706)
++|...+. |+.|..- .+ ++||+||+|||.+..|+..... +....+.++.+.+|+..||| |.-
T Consensus 88 sEDCL~Ln--I~~P~~~--~~--~lPV~v~ihGG~~~~g~~~~~~-----------~~~~~~~~~~~vvvVt~nYRlg~~ 150 (532)
T d1ea5a_ 88 SEDCLYLN--IWVPSPR--PK--STTVMVWIYGGGFYSGSSTLDV-----------YNGKYLAYTEEVVLVSLSYRVGAF 150 (532)
T ss_dssp CSCCCEEE--EEECSSC--CS--SEEEEEEECCSTTTCCCTTCGG-----------GCTHHHHHHHTCEEEECCCCCHHH
T ss_pred CccCCEEE--EEeCCCC--CC--CCcEEEEEEcCCcccccCCccc-----------cCcchhhcccCccEEEEeeccccc
Confidence 45776665 6789752 22 4899999999976432221111 11233455689999998887 333
Q ss_pred CCCCCC-CchhhHHHHHHHHHHHHHHHHHc--CC-CCCCcEEEEEechHHHHHHHHHHhC--CCceeEEEeccCCCC
Q 005240 568 GEGDKL-PNDRFVEQLVSSAEAAVEEVVRR--GV-ADPSRIAVGGHSYGAFMTAHLLAHA--PHLFCCGIARSGSYN 638 (706)
Q Consensus 568 g~g~~~-~~~~~~~~~~~D~~~~~~~l~~~--~~-id~~~i~i~G~S~GG~~a~~~~~~~--p~~~~a~v~~~~~~d 638 (706)
|+-... .....++.-+.|+..|++|+++. .| -||+||.|+|+|.||..+.+++... ..+|..+|+.+|...
T Consensus 151 GFl~~~~~~~~~gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~~~sp~~~~lF~~aI~~Sg~~~ 227 (532)
T d1ea5a_ 151 GFLALHGSQEAPGNVGLLDQRMALQWVHDNIQFFGGDPKTVTIFGESAGGASVGMHILSPGSRDLFRRAILQSGSPN 227 (532)
T ss_dssp HHCCCTTCSSSCSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCHHHHTTCSEEEEESCCTT
T ss_pred cccccccccCCCCcccchhHHHHHHHHHHHHHhhcCCccceEeeeecccccchhhhccCccchhhhhhheeeccccc
Confidence 432111 11222345689999999999995 33 6999999999999999988887642 258999999887643
|
| >d1ukca_ c.69.1.17 (A:) Esterase EstA {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Esterase EstA species: Aspergillus niger [TaxId: 5061]
Probab=98.68 E-value=1.7e-08 Score=108.13 Aligned_cols=134 Identities=16% Similarity=0.161 Sum_probs=88.0
Q ss_pred ccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHH-HCCeEEEEcCCC-Cc
Q 005240 489 RKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFL-ARRFAVLAGPSI-PI 566 (706)
Q Consensus 489 ~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~G~~v~~~~~~-~~ 566 (706)
++|...+. |+.|+..... .++||+||+|||.+..|+. ..+. .....++ ..+++|+..||| |.
T Consensus 77 sEDCL~Ln--I~~P~~~~~~--~~~PV~v~ihGG~~~~G~~--------~~~~----~~~~~~~~~~~vVvVt~nYRlg~ 140 (517)
T d1ukca_ 77 SEDCLFIN--VFKPSTATSQ--SKLPVWLFIQGGGYAENSN--------ANYN----GTQVIQASDDVIVFVTFNYRVGA 140 (517)
T ss_dssp ESCCCEEE--EEEETTCCTT--CCEEEEEEECCSTTTSCCS--------CSCC----CHHHHHHTTSCCEEEEECCCCHH
T ss_pred CCcCCEEE--EEeCCCCCCC--CCceEEEEEcCCccccCCC--------cccc----chhhhhhhccccceEEEEecccc
Confidence 45775555 7889864333 3599999999998754322 1111 1122334 466787777776 33
Q ss_pred CCCCCCCCch--hhHHHHHHHHHHHHHHHHHc--CC-CCCCcEEEEEechHHHHHHHHHHh----CCCceeEEEeccCCC
Q 005240 567 IGEGDKLPND--RFVEQLVSSAEAAVEEVVRR--GV-ADPSRIAVGGHSYGAFMTAHLLAH----APHLFCCGIARSGSY 637 (706)
Q Consensus 567 ~g~g~~~~~~--~~~~~~~~D~~~~~~~l~~~--~~-id~~~i~i~G~S~GG~~a~~~~~~----~p~~~~a~v~~~~~~ 637 (706)
-|+=...... ...+.-+.|++.|++|+++. .| -||++|.|+|+|.||..+...+.. ...+|+.+|+.+|..
T Consensus 141 ~GFl~~~~~~~~~~~N~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~s~~~~~~gLF~raI~qSg~~ 220 (517)
T d1ukca_ 141 LGFLASEKVRQNGDLNAGLLDQRKALRWVKQYIEQFGGDPDHIVIHGVSAGAGSVAYHLSAYGGKDEGLFIGAIVESSFW 220 (517)
T ss_dssp HHHCCCHHHHHSSCTTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHTGGGTCCCSSCSEEEEESCCC
T ss_pred eeecCccccccccccchhHHHHHHHHHHHHHHHHhhcCCcccccccccccchhhHHHHHhccccccccccceeeeccccc
Confidence 3431110001 12256689999999999985 33 799999999999999998766543 224899999999865
Q ss_pred C
Q 005240 638 N 638 (706)
Q Consensus 638 d 638 (706)
.
T Consensus 221 ~ 221 (517)
T d1ukca_ 221 P 221 (517)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >d1qlwa_ c.69.1.15 (A:) A novel bacterial esterase {Alcaligenes sp. [TaxId: 512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: A novel bacterial esterase domain: A novel bacterial esterase species: Alcaligenes sp. [TaxId: 512]
Probab=98.65 E-value=7.7e-10 Score=110.49 Aligned_cols=45 Identities=27% Similarity=0.414 Sum_probs=39.2
Q ss_pred HHHHHHHhCCCcEEEEEeC-----CCCccCCCcccHHHHHHHHHHHHHHH
Q 005240 650 RFFDALKGHGALSRLVLLP-----FEHHVYAARENVMHVIWETDRWLQKY 694 (706)
Q Consensus 650 ~~~~~l~~~~~~~~~~~~~-----~~~H~~~~~~~~~~~~~~~~~f~~~~ 694 (706)
.++++|++++.+++++.+| |++|.+....+..++.+.|.+||++|
T Consensus 267 ~~~~~l~~~g~~~~~~~lp~~gi~G~gH~~~~e~~~~~va~~i~~wL~~~ 316 (318)
T d1qlwa_ 267 AFIDALNAAGGKGQLMSLPALGVHGNSHMMMQDRNNLQVADLILDWIGRN 316 (318)
T ss_dssp HHHHHHHHTTCCEEEEEGGGGTCCCCCTTGGGSTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCcEEEEecccccCCCcCccccCcCHHHHHHHHHHHHHhc
Confidence 7888999999999999987 56699876667789999999999986
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.65 E-value=4.8e-06 Score=82.42 Aligned_cols=146 Identities=9% Similarity=0.053 Sum_probs=87.6
Q ss_pred ceEEEEccCC-Ccee-cCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCC
Q 005240 157 AQLVLGSLDG-TAKD-FGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDI 233 (706)
Q Consensus 157 ~~l~~~~l~g-~~~~-lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~ 233 (706)
+.|++++.+| +... +... .....++++|||+.++ ....... ....+...+..++....+.......
T Consensus 61 g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~v-a~~~~~~--------~~~~i~~~~~~~~~~~~~~~~~~~~-- 129 (319)
T d2dg1a1 61 GNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFV-CYLGDFK--------STGGIFAATENGDNLQDIIEDLSTA-- 129 (319)
T ss_dssp CEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEE-EECTTSS--------SCCEEEEECTTSCSCEEEECSSSSC--
T ss_pred CEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEE-EecCCCc--------cceeEEEEcCCCceeeeeccCCCcc--
Confidence 6899999866 3333 2222 5677899999997544 3322100 0235667777766655544322111
Q ss_pred CcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceE
Q 005240 234 PVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLAL 313 (706)
Q Consensus 234 p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l 313 (706)
.....+.+.++|+ ||+.. .... .......+++++. +++..+.+...-.....++|+||++.|
T Consensus 130 --------~~~nd~~~d~~G~--l~vtd-~~~~----~~~~~g~v~~~~~---dg~~~~~~~~~~~~pnGia~s~dg~~l 191 (319)
T d2dg1a1 130 --------YCIDDMVFDSKGG--FYFTD-FRGY----STNPLGGVYYVSP---DFRTVTPIIQNISVANGIALSTDEKVL 191 (319)
T ss_dssp --------CCEEEEEECTTSC--EEEEE-CCCB----TTBCCEEEEEECT---TSCCEEEEEEEESSEEEEEECTTSSEE
T ss_pred --------cCCcceeEEeccc--eeecc-cccc----cccCcceeEEEec---ccceeEEEeeccceeeeeeeccccceE
Confidence 1123678899996 66553 2211 1123446888887 666667666554455678999999988
Q ss_pred EEEeeccccceEEEEEcCCCC
Q 005240 314 VNETWYKTSQTRTWLVCPGSK 334 (706)
Q Consensus 314 ~~~~~~~~~~~~l~~~d~~~~ 334 (706)
++... ...+|++++++..
T Consensus 192 yvad~---~~~~I~~~d~~~~ 209 (319)
T d2dg1a1 192 WVTET---TANRLHRIALEDD 209 (319)
T ss_dssp EEEEG---GGTEEEEEEECTT
T ss_pred EEecc---cCCceEEEEEcCC
Confidence 87642 3457888887653
|
| >d1p0ia_ c.69.1.1 (A:) Butyryl cholinesterase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Butyryl cholinesterase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.64 E-value=2.5e-08 Score=107.20 Aligned_cols=133 Identities=20% Similarity=0.256 Sum_probs=88.6
Q ss_pred ccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCC-CcC
Q 005240 489 RKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSI-PII 567 (706)
Q Consensus 489 ~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~-~~~ 567 (706)
++|...+. ||.|.. ..+ ++||+||+|||.+..|+...... ....+.++.+.+|+..||| |.-
T Consensus 86 sEDCL~ln--I~~P~~--~~~--~~PV~v~ihGG~~~~gs~~~~~~-----------~~~~~~~~~~vVvVt~nYRlg~~ 148 (526)
T d1p0ia_ 86 SEDCLYLN--VWIPAP--KPK--NATVLIWIYGGGFQTGTSSLHVY-----------DGKFLARVERVIVVSMNYRVGAL 148 (526)
T ss_dssp CSCCCEEE--EEEESS--CCS--SEEEEEEECCSTTTSCCTTCGGG-----------CTHHHHHHHCCEEEEECCCCHHH
T ss_pred CCcCCEEE--EEeCCC--CCC--CCceEEEEECCCcccccCccccc-----------CccccccccceeEEecccccccc
Confidence 45775555 778975 222 48999999999875433222211 1122234578999887776 333
Q ss_pred CCCCC-CCchhhHHHHHHHHHHHHHHHHHc--CC-CCCCcEEEEEechHHHHHHHHHHhC--CCceeEEEeccCCCC
Q 005240 568 GEGDK-LPNDRFVEQLVSSAEAAVEEVVRR--GV-ADPSRIAVGGHSYGAFMTAHLLAHA--PHLFCCGIARSGSYN 638 (706)
Q Consensus 568 g~g~~-~~~~~~~~~~~~D~~~~~~~l~~~--~~-id~~~i~i~G~S~GG~~a~~~~~~~--p~~~~a~v~~~~~~d 638 (706)
|+-.. ......++.-+.|+..|++|+++. .| -||+||-|+|+|.||..+..++... ...|+.+|+.+|...
T Consensus 149 Gfl~~~~~~~~~gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~~~sp~~~~lf~~aI~~Sg~~~ 225 (526)
T d1p0ia_ 149 GFLALPGNPEAPGNMGLFDQQLALQWVQKNIAAFGGNPKSVTLFGESAGAASVSLHLLSPGSHSLFTRAILQSGSFN 225 (526)
T ss_dssp HHCCCTTCTTSCSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGGGGCSEEEEESCCTT
T ss_pred cccCCCCcccccccccccchhhhhhhHHHHHHHhhcCchheeehhhccccceeeccccCCcchhhhhhhhccccccc
Confidence 43111 111223455789999999999885 33 6999999999999999997777542 347999999887643
|
| >d1mj5a_ c.69.1.8 (A:) Haloalkane dehalogenase {Sphingomonas paucimobilis, UT26, LinB [TaxId: 13689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloalkane dehalogenase domain: Haloalkane dehalogenase species: Sphingomonas paucimobilis, UT26, LinB [TaxId: 13689]
Probab=98.62 E-value=3.2e-07 Score=89.22 Aligned_cols=113 Identities=10% Similarity=-0.096 Sum_probs=67.9
Q ss_pred cCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCC
Q 005240 490 KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGE 569 (706)
Q Consensus 490 ~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~ 569 (706)
.||..|+.... ++ -|.||++||.+.. ...|. ..+..| +.+|.|++++-+ |+
T Consensus 15 ~~g~~i~y~~~-------G~---g~~vvllHG~~~~-----------~~~~~----~~~~~L-~~~~~vi~~Dl~---G~ 65 (298)
T d1mj5a_ 15 IKGRRMAYIDE-------GT---GDPILFQHGNPTS-----------SYLWR----NIMPHC-AGLGRLIACDLI---GM 65 (298)
T ss_dssp ETTEEEEEEEE-------SC---SSEEEEECCTTCC-----------GGGGT----TTGGGG-TTSSEEEEECCT---TS
T ss_pred ECCEEEEEEEE-------cC---CCcEEEECCCCCC-----------HHHHH----HHHHHH-hcCCEEEEEeCC---CC
Confidence 37888885543 12 2568889997521 11221 122333 466888886655 44
Q ss_pred CCCCCch------hhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCC
Q 005240 570 GDKLPND------RFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 636 (706)
Q Consensus 570 g~~~~~~------~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~ 636 (706)
|.+.... ........++ +..+.+.. ..+++.++|||+||.+++.++.++|+++++++...+.
T Consensus 66 G~S~~~~~~~~~~~~~~~~~~~~---~~~~~~~~--~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~l~~~~~~ 133 (298)
T d1mj5a_ 66 GDSDKLDPSGPERYAYAEHRDYL---DALWEALD--LGDRVVLVVHDWGSALGFDWARRHRERVQGIAYMEAI 133 (298)
T ss_dssp TTSCCCSSCSTTSSCHHHHHHHH---HHHHHHTT--CTTCEEEEEEHHHHHHHHHHHHHTGGGEEEEEEEEEC
T ss_pred CCCCCCccccccccccchhhhhh---cccccccc--ccccCeEEEecccchhHHHHHHHHHhhhheeeccccc
Confidence 4443211 1122222222 22233332 3468999999999999999999999999998887754
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.61 E-value=4.8e-06 Score=81.71 Aligned_cols=244 Identities=14% Similarity=0.150 Sum_probs=131.6
Q ss_pred CCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCC
Q 005240 19 GPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNS 98 (706)
Q Consensus 19 g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg 98 (706)
..++.++.+|.+....+++++|||+ |+++. -...+||.++.++. .+.+..... .+..++++|||
T Consensus 16 ~~~~v~~~~p~~~~~e~iAv~pdG~-l~vt~---------~~~~~I~~i~p~g~-~~~~~~~~~-----~~~gla~~~dG 79 (302)
T d2p4oa1 16 APAKIITSFPVNTFLENLASAPDGT-IFVTN---------HEVGEIVSITPDGN-QQIHATVEG-----KVSGLAFTSNG 79 (302)
T ss_dssp CCEEEEEEECTTCCEEEEEECTTSC-EEEEE---------TTTTEEEEECTTCC-EEEEEECSS-----EEEEEEECTTS
T ss_pred CcccEEEECCCCCCcCCEEECCCCC-EEEEe---------CCCCEEEEEeCCCC-EEEEEcCCC-----CcceEEEcCCC
Confidence 5677788888877788899999997 44443 33478999997654 444443333 26788999999
Q ss_pred cEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc---CCCceecCC--
Q 005240 99 TLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL---DGTAKDFGT-- 173 (706)
Q Consensus 99 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l---~g~~~~lt~-- 173 (706)
+.++..... ..++++++ ++....+..
T Consensus 80 ~l~v~~~~~-------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~ 110 (302)
T d2p4oa1 80 DLVATGWNA-------------------------------------------------DSIPVVSLVKSDGTVETLLTLP 110 (302)
T ss_dssp CEEEEEECT-------------------------------------------------TSCEEEEEECTTSCEEEEEECT
T ss_pred CeEEEecCC-------------------------------------------------ceEEEEEecccccceeeccccC
Confidence 954443210 23333333 333333322
Q ss_pred -CceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecC
Q 005240 174 -PAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRAD 252 (706)
Q Consensus 174 -~~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spd 252 (706)
......+++.+||+. ++.... ...++.++..++............ +............+ +.+
T Consensus 111 ~~~~~n~i~~~~~g~~-~v~~~~------------~~~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ngi--~~~ 173 (302)
T d2p4oa1 111 DAIFLNGITPLSDTQY-LTADSY------------RGAIWLIDVVQPSGSIWLEHPMLA--RSNSESVFPAANGL--KRF 173 (302)
T ss_dssp TCSCEEEEEESSSSEE-EEEETT------------TTEEEEEETTTTEEEEEEECGGGS--CSSTTCCSCSEEEE--EEE
T ss_pred CccccceeEEccCCCE-Eeeccc------------cccceeeeccCCcceeEecCCccc--eeeccCcccccccc--ccc
Confidence 245668889999954 344332 247888888876544332221100 00000000011123 334
Q ss_pred CCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCc--eEEeecccccccceecCCCceEEEEeeccccceEEEEEc
Q 005240 253 KPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP--EILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVC 330 (706)
Q Consensus 253 g~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~--~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d 330 (706)
+.. ||+... ....|++++.+ ..+.. ..+.........+++.+||. |+++.. ...+|++++
T Consensus 174 ~~~-l~~~~~-----------~~~~i~~~~~~--~~~~~~~~~~~~~~~~pdgia~d~dG~-l~va~~---~~~~V~~i~ 235 (302)
T d2p4oa1 174 GNF-LYVSNT-----------EKMLLLRIPVD--STDKPGEPEIFVEQTNIDDFAFDVEGN-LYGATH---IYNSVVRIA 235 (302)
T ss_dssp TTE-EEEEET-----------TTTEEEEEEBC--TTSCBCCCEEEEESCCCSSEEEBTTCC-EEEECB---TTCCEEEEC
T ss_pred CCc-eeeecC-----------CCCeEEecccc--ccccccccccccCCCCCcceEECCCCC-EEEEEc---CCCcEEEEC
Confidence 554 665531 12357777773 22222 12233344567789999997 444332 234699998
Q ss_pred CCCCCCCceeeec--CcccccccCCCCCceEe---ccCCCEEEEee
Q 005240 331 PGSKDVAPRVLFD--RVFENVYSDPGSPMMTR---TSTGTNVIAKI 371 (706)
Q Consensus 331 ~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~---s~dg~~l~~~~ 371 (706)
.++. ...+.. .... +...++| ++|++.||+..
T Consensus 236 p~G~---~~~~~~~~~~~~------~pt~vafg~~~~D~~~Lyvtt 272 (302)
T d2p4oa1 236 PDRS---TTIIAQAEQGVI------GSTAVAFGQTEGDCTAIYVVT 272 (302)
T ss_dssp TTCC---EEEEECGGGTCT------TEEEEEECCSTTTTTEEEEEE
T ss_pred CCCC---EEEEEecCCCCC------CceEEEEcCCCCCCCEEEEEC
Confidence 8862 233321 1111 1112455 67888887764
|
| >d1m33a_ c.69.1.26 (A:) Biotin biosynthesis protein BioH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Biotin biosynthesis protein BioH domain: Biotin biosynthesis protein BioH species: Escherichia coli [TaxId: 562]
Probab=98.60 E-value=5.3e-08 Score=93.38 Aligned_cols=77 Identities=14% Similarity=0.168 Sum_probs=51.1
Q ss_pred HHHHHHHCCeEEEEcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCc
Q 005240 547 SSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHL 626 (706)
Q Consensus 547 ~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~ 626 (706)
.+..| +.||.|++++.+ |+|.+...... .+.|+. +.+... ..+++.++|||+||.+++.++.++|++
T Consensus 30 ~~~~L-~~~~~vi~~D~~---G~G~S~~~~~~---~~~d~~---~~~~~~---~~~~~~l~GhS~Gg~ia~~~a~~~p~~ 96 (256)
T d1m33a_ 30 IDEEL-SSHFTLHLVDLP---GFGRSRGFGAL---SLADMA---EAVLQQ---APDKAIWLGWSLGGLVASQIALTHPER 96 (256)
T ss_dssp THHHH-HTTSEEEEECCT---TSTTCCSCCCC---CHHHHH---HHHHTT---SCSSEEEEEETHHHHHHHHHHHHCGGG
T ss_pred HHHHH-hCCCEEEEEeCC---CCCCccccccc---cccccc---cccccc---cccceeeeecccchHHHHHHHHhCCcc
Confidence 34555 478999986665 55655332211 122222 222222 236899999999999999999999999
Q ss_pred eeEEEeccCC
Q 005240 627 FCCGIARSGS 636 (706)
Q Consensus 627 ~~a~v~~~~~ 636 (706)
+++++...+.
T Consensus 97 ~~~l~~~~~~ 106 (256)
T d1m33a_ 97 VRALVTVASS 106 (256)
T ss_dssp EEEEEEESCC
T ss_pred cceeeeeecc
Confidence 9998887643
|
| >d1dx4a_ c.69.1.1 (A:) Acetylcholinesterase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Acetylcholinesterase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.60 E-value=3.7e-08 Score=106.84 Aligned_cols=116 Identities=18% Similarity=0.196 Sum_probs=79.0
Q ss_pred CCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHH-CCeEEEEcCCC-CcCCCCC-------CCCchhhHHH
Q 005240 511 GPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA-RRFAVLAGPSI-PIIGEGD-------KLPNDRFVEQ 581 (706)
Q Consensus 511 ~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~G~~v~~~~~~-~~~g~g~-------~~~~~~~~~~ 581 (706)
.++||+||+|||.+..|+..... .....|++ ...+|+..||| |.-|+=. .......++.
T Consensus 137 ~~lPV~V~ihGG~f~~Gs~~~~~------------~~~~~l~~~~~vVvVtinYRlg~fGFl~~~~~~~~~~~~~~~gN~ 204 (571)
T d1dx4a_ 137 NGLPILIWIYGGGFMTGSATLDI------------YNADIMAAVGNVIVASFQYRVGAFGFLHLAPEMPSEFAEEAPGNV 204 (571)
T ss_dssp SSEEEEEEECCSTTTCCCTTCGG------------GCCHHHHHHHTCEEEEECCCCTHHHHCCCGGGSCGGGTTSSCSCH
T ss_pred CCCeEEEEEeCCCccCCCCcccc------------cchhhhhhcCCeeEEeecceeccccccccccccccccccCCCCcc
Confidence 35999999999976432221111 11244554 46888877776 4434310 0011223456
Q ss_pred HHHHHHHHHHHHHHc--CC-CCCCcEEEEEechHHHHHHHHHHhC--CCceeEEEeccCCCC
Q 005240 582 LVSSAEAAVEEVVRR--GV-ADPSRIAVGGHSYGAFMTAHLLAHA--PHLFCCGIARSGSYN 638 (706)
Q Consensus 582 ~~~D~~~~~~~l~~~--~~-id~~~i~i~G~S~GG~~a~~~~~~~--p~~~~a~v~~~~~~d 638 (706)
-+.|++.|++|+++. .| -||+||-|+|+|.||..+.+++... ...|+.+|+.+|...
T Consensus 205 Gl~Dq~~AL~WV~~nI~~FGGDP~~VTl~G~SAGa~sv~~ll~sp~~~~lf~~aI~~Sg~~~ 266 (571)
T d1dx4a_ 205 GLWDQALAIRWLKDNAHAFGGNPEWMTLFGESAGSSSVNAQLMSPVTRGLVKRGMMQSGTMN 266 (571)
T ss_dssp HHHHHHHHHHHHHHSTGGGTEEEEEEEEEEETHHHHHHHHHHHCTTTTTSCCEEEEESCCTT
T ss_pred cchHHHHHHHHHHHhhhhhccCCCceEeccccCccceeeeeeccccccccccccceeccccc
Confidence 789999999999996 33 6999999999999999998887653 347999999988654
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.59 E-value=1.4e-05 Score=78.98 Aligned_cols=240 Identities=12% Similarity=0.028 Sum_probs=130.4
Q ss_pred ccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCC
Q 005240 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDP 112 (706)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~ 112 (706)
...|+|.|||+ |+|+. -....|+.+++++++.......... ....+++++||+.++..... ..
T Consensus 42 lEG~~~D~~G~-Ly~~D---------~~~g~I~ri~p~g~~~~~~~~~~~~----~p~gla~~~dG~l~va~~~~-~~-- 104 (319)
T d2dg1a1 42 LEGLNFDRQGQ-LFLLD---------VFEGNIFKINPETKEIKRPFVSHKA----NPAAIKIHKDGRLFVCYLGD-FK-- 104 (319)
T ss_dssp EEEEEECTTSC-EEEEE---------TTTCEEEEECTTTCCEEEEEECSSS----SEEEEEECTTSCEEEEECTT-SS--
T ss_pred cEeCEECCCCC-EEEEE---------CCCCEEEEEECCCCeEEEEEeCCCC----CeeEEEECCCCCEEEEecCC-Cc--
Confidence 45899999997 76653 2346899999988765544321111 25678999999865543210 00
Q ss_pred CCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCC-CceecCCC----ceEeeeeeCCCCc
Q 005240 113 PKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TAKDFGTP----AVYTAVEPSPDQK 187 (706)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g-~~~~lt~~----~~~~~~~~SpDG~ 187 (706)
....++.++.++ ....+... .....+++.|||+
T Consensus 105 ------------------------------------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~ 142 (319)
T d2dg1a1 105 ------------------------------------------STGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGG 142 (319)
T ss_dssp ------------------------------------------SCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSC
T ss_pred ------------------------------------------cceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccc
Confidence 124677777754 44433322 3456788999996
Q ss_pred EEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCC
Q 005240 188 YVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGD 267 (706)
Q Consensus 188 ~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~ 267 (706)
|+++....... .....++.++.+++.++.+...- ..+..++|+||++. ||+.. .
T Consensus 143 -l~vtd~~~~~~------~~~g~v~~~~~dg~~~~~~~~~~-------------~~pnGia~s~dg~~-lyvad-~---- 196 (319)
T d2dg1a1 143 -FYFTDFRGYST------NPLGGVYYVSPDFRTVTPIIQNI-------------SVANGIALSTDEKV-LWVTE-T---- 196 (319)
T ss_dssp -EEEEECCCBTT------BCCEEEEEECTTSCCEEEEEEEE-------------SSEEEEEECTTSSE-EEEEE-G----
T ss_pred -eeecccccccc------cCcceeEEEecccceeEEEeecc-------------ceeeeeeeccccce-EEEec-c----
Confidence 76665432110 11246888888887776654321 11236899999987 77653 2
Q ss_pred CccccCccceeeeecCCCCCCCCceEEe----ec---ccccccceecCCCceEEEEeeccccceEEEEEcCCCCCCCcee
Q 005240 268 ANVEVSPRDIIYTQPAEPAEGEKPEILH----KL---DLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRV 340 (706)
Q Consensus 268 ~~~~~~~~~~l~~~d~~~~~~~~~~~l~----~~---~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~ 340 (706)
....|++++++. ++....... .. ......+++.++|. |+++.. ....|++++.++ +...
T Consensus 197 ------~~~~I~~~d~~~-~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~-l~Va~~---~~g~V~~~~p~G---~~l~ 262 (319)
T d2dg1a1 197 ------TANRLHRIALED-DGVTIQPFGATIPYYFTGHEGPDSCCIDSDDN-LYVAMY---GQGRVLVFNKRG---YPIG 262 (319)
T ss_dssp ------GGTEEEEEEECT-TSSSEEEEEEEEEEECCSSSEEEEEEEBTTCC-EEEEEE---TTTEEEEECTTS---CEEE
T ss_pred ------cCCceEEEEEcC-CCceeccccceeeeccCCccceeeeeEcCCCC-EEEEEc---CCCEEEEECCCC---cEEE
Confidence 122477777631 222221111 11 11233466777776 333321 345799999875 2222
Q ss_pred eecCcccccccCCCCCceEeccCCCEEEEee
Q 005240 341 LFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 341 l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 371 (706)
-..-........+....+.+.+++..++...
T Consensus 263 ~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~ 293 (319)
T d2dg1a1 263 QILIPGRDEGHMLRSTHPQFIPGTNQLIICS 293 (319)
T ss_dssp EEECTTGGGTCSCBCCEEEECTTSCEEEEEE
T ss_pred EEeCCCcCCCcCceeeeEEEeCCCCEEEEEc
Confidence 1221111111111122355667776666554
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.53 E-value=1e-05 Score=79.62 Aligned_cols=248 Identities=13% Similarity=0.115 Sum_probs=128.8
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~ 111 (706)
....|+|.|||+ |+++..... ... ....+|+.+++++++...+..............+.+++||..|++...
T Consensus 19 g~EGpa~d~dG~-ly~~~~~~~-~~~-~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~----- 90 (314)
T d1pjxa_ 19 GAEGPVFDKNGD-FYIVAPEVE-VNG-KPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM----- 90 (314)
T ss_dssp TCEEEEECTTSC-EEEEETTCE-ETT-EECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-----
T ss_pred CCeEeEEeCCCC-EEEEECccc-ccc-ccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEEC-----
Confidence 455799999997 545542100 000 113579999999987765532211111111346789999987776521
Q ss_pred CCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCCCceecCC-C------ceEeeeeeCC
Q 005240 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGT-P------AVYTAVEPSP 184 (706)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g~~~~lt~-~------~~~~~~~~Sp 184 (706)
...|.+++.+|....+.. . .....+++.|
T Consensus 91 --------------------------------------------~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~ 126 (314)
T d1pjxa_ 91 --------------------------------------------RLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDY 126 (314)
T ss_dssp --------------------------------------------TTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECT
T ss_pred --------------------------------------------CCeEEEEeCCCcEEEEEeccccccccCCCcEEEECC
Confidence 145777888764333221 1 1245688999
Q ss_pred CCcEEEEEeeccCcc---cccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCc---eEE
Q 005240 185 DQKYVLITSMHRPYS---YKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPS---TLY 258 (706)
Q Consensus 185 DG~~i~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~---~l~ 258 (706)
|| .|+|+....... ...........++.++.+++..+...... .+..++|+||++. .||
T Consensus 127 ~G-~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~~~~~~~~~~--------------~pNGi~~~~d~d~~~~~ly 191 (314)
T d1pjxa_ 127 EG-NLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTAFQ--------------FPNGIAVRHMNDGRPYQLI 191 (314)
T ss_dssp TS-CEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEEEEES--------------SEEEEEEEECTTSCEEEEE
T ss_pred CC-CEEEecCccCcccccccceeccCCceEEEEeecCceeEeeCCcc--------------eeeeeEECCCCCcceeEEE
Confidence 99 566765332110 00000111247888888776544332221 1225789998752 144
Q ss_pred EEEeccCCCCccccCccceeeeecCCCCCCCCce--EE-eecc----cccccceecCCCceEEEEeeccccceEEEEEcC
Q 005240 259 WVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPE--IL-HKLD----LRFRSVSWCDDSLALVNETWYKTSQTRTWLVCP 331 (706)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~--~l-~~~~----~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~ 331 (706)
+. +. ....|++++++ ..+.+. ++ .... .....+++..+|..++ +.. +..+|+++|+
T Consensus 192 v~-d~----------~~~~i~~~d~~--~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyV-a~~---~~g~I~~~dp 254 (314)
T d1pjxa_ 192 VA-ET----------PTKKLWSYDIK--GPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLV-ANW---GSSHIEVFGP 254 (314)
T ss_dssp EE-ET----------TTTEEEEEEEE--ETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEE-EEE---TTTEEEEECT
T ss_pred EE-ee----------cccceEEeecc--CccccceeeEEEEccccccccceeeEEecCCcEEE-EEc---CCCEEEEEeC
Confidence 33 22 12247777662 223222 11 1111 1233567777887333 321 3457999999
Q ss_pred CCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEee
Q 005240 332 GSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (706)
Q Consensus 332 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 371 (706)
+++ +.......... ....++|.||++.|+++.
T Consensus 255 ~~g--~~~~~i~~p~~------~~t~~afg~d~~~lyVt~ 286 (314)
T d1pjxa_ 255 DGG--QPKMRIRCPFE------KPSNLHFKPQTKTIFVTE 286 (314)
T ss_dssp TCB--SCSEEEECSSS------CEEEEEECTTSSEEEEEE
T ss_pred CCC--EEEEEEECCCC------CEEEEEEeCCCCEEEEEE
Confidence 874 33322221111 112367788998887765
|
| >d1cvla_ c.69.1.18 (A:) Lipase {Chromobacterium viscosum [TaxId: 42739]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Bacterial lipase domain: Lipase species: Chromobacterium viscosum [TaxId: 42739]
Probab=98.51 E-value=3e-07 Score=91.30 Aligned_cols=83 Identities=17% Similarity=0.125 Sum_probs=60.2
Q ss_pred hHHHHHHHCCeEEEEcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCC
Q 005240 546 TSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH 625 (706)
Q Consensus 546 ~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~ 625 (706)
.....|++.||.|+.++.+ |+|.+.......++..+++.. +.+. .+.++|.++||||||.++..++.++|+
T Consensus 32 ~~~~~L~~~G~~V~~~~~~---g~g~s~~~~~~~~~l~~~i~~----~~~~--~~~~~v~lvGhS~GG~~~~~~~~~~p~ 102 (319)
T d1cvla_ 32 GIQSDLQSHGAKVYVANLS---GFQSDDGPNGRGEQLLAYVKQ----VLAA--TGATKVNLIGHSQGGLTSRYVAAVAPQ 102 (319)
T ss_dssp THHHHHHHTTCCEEECCCB---CSSCTTSTTSHHHHHHHHHHH----HHHH--HCCSCEEEEEETTHHHHHHHHHHHCGG
T ss_pred HHHHHHHHCCCEEEEecCC---CCCCCCCCcccHHHHHHHHHH----HHHH--hCCCCEEEEeccccHHHHHHHHHHCcc
Confidence 4567889999999986664 455544333344444444433 3332 135799999999999999999999999
Q ss_pred ceeEEEeccCCC
Q 005240 626 LFCCGIARSGSY 637 (706)
Q Consensus 626 ~~~a~v~~~~~~ 637 (706)
+++.++.+++..
T Consensus 103 ~v~~vv~i~~p~ 114 (319)
T d1cvla_ 103 LVASVTTIGTPH 114 (319)
T ss_dssp GEEEEEEESCCT
T ss_pred ccceEEEECCCC
Confidence 999999988754
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.49 E-value=1.7e-05 Score=78.10 Aligned_cols=217 Identities=9% Similarity=0.109 Sum_probs=125.2
Q ss_pred ccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCC-CccccccccceEEecCCcEEEEEecCCCCC
Q 005240 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESP-DICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (706)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~-~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~ 111 (706)
.....++|||+.|+.. +....|.+++.+++....+.... ...++ ...++...|||. |+++.......
T Consensus 73 P~Gl~~~~dg~~l~va----------d~~~~i~~~~~~g~~~~~~~~~~~g~~~~-~pndl~~d~~G~-lyvtd~~~~~~ 140 (314)
T d1pjxa_ 73 PAGCQCDRDANQLFVA----------DMRLGLLVVQTDGTFEEIAKKDSEGRRMQ-GCNDCAFDYEGN-LWITAPAGEVA 140 (314)
T ss_dssp EEEEEECSSSSEEEEE----------ETTTEEEEEETTSCEEECCSBCTTSCBCB-CCCEEEECTTSC-EEEEECBCBCT
T ss_pred ceeEEEeCCCCEEEEE----------ECCCeEEEEeCCCcEEEEEeccccccccC-CCcEEEECCCCC-EEEecCccCcc
Confidence 3468899999988554 23356899998877655443222 11111 145678899997 56653211110
Q ss_pred CCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCCCceecCCC-ceEeeeeeCCCCc---
Q 005240 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTP-AVYTAVEPSPDQK--- 187 (706)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g~~~~lt~~-~~~~~~~~SpDG~--- 187 (706)
... .. . ......+.||+++.+|+...+... .....++|+||++
T Consensus 141 ~~~-~~------------~--------------------~~~~~~G~v~~~~~dg~~~~~~~~~~~pNGi~~~~d~d~~~ 187 (314)
T d1pjxa_ 141 PAD-YT------------R--------------------SMQEKFGSIYCFTTDGQMIQVDTAFQFPNGIAVRHMNDGRP 187 (314)
T ss_dssp TSC-CC------------B--------------------TTSSSCEEEEEECTTSCEEEEEEEESSEEEEEEEECTTSCE
T ss_pred ccc-cc------------c--------------------eeccCCceEEEEeecCceeEeeCCcceeeeeEECCCCCcce
Confidence 000 00 0 000133789999998876665544 4456789999875
Q ss_pred -EEEEEeeccCcccccccccccceEEEEecCC-CeeE---EcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEe
Q 005240 188 -YVLITSMHRPYSYKVPCARFSQKVQVWTTDG-KLVR---ELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEA 262 (706)
Q Consensus 188 -~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~---~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~ 262 (706)
+|++.... ...|+.++++. +.+. .+........ .++..+++.++|+ ||.. .
T Consensus 188 ~~lyv~d~~------------~~~i~~~d~~~~g~~~~~~~~~~~~~~~~---------~~pdGiavD~~Gn--lyVa-~ 243 (314)
T d1pjxa_ 188 YQLIVAETP------------TKKLWSYDIKGPAKIENKKVWGHIPGTHE---------GGADGMDFDEDNN--LLVA-N 243 (314)
T ss_dssp EEEEEEETT------------TTEEEEEEEEETTEEEEEEEEEECCCCSS---------CEEEEEEEBTTCC--EEEE-E
T ss_pred eEEEEEeec------------ccceEEeeccCccccceeeEEEEcccccc---------ccceeeEEecCCc--EEEE-E
Confidence 56554433 25788888762 2221 1222221110 1133567788886 6543 2
Q ss_pred ccCCCCccccCccceeeeecCCCCCCCCceE-EeecccccccceecCCCceEEEEeeccccceEEEEEcCCCC
Q 005240 263 QDRGDANVEVSPRDIIYTQPAEPAEGEKPEI-LHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK 334 (706)
Q Consensus 263 ~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~-l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~ 334 (706)
. ..+.|+++|. ++++... +.........++|.||++.|+++.. ...+||++++...
T Consensus 244 ~----------~~g~I~~~dp---~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~---~~g~i~~~~~~~~ 300 (314)
T d1pjxa_ 244 W----------GSSHIEVFGP---DGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEH---ENNAVWKFEWQRN 300 (314)
T ss_dssp E----------TTTEEEEECT---TCBSCSEEEECSSSCEEEEEECTTSSEEEEEET---TTTEEEEEECSSC
T ss_pred c----------CCCEEEEEeC---CCCEEEEEEECCCCCEEEEEEeCCCCEEEEEEC---CCCcEEEEECCCC
Confidence 2 1235888887 6666544 4333456678999999988877642 3457999987664
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.45 E-value=2.9e-07 Score=93.99 Aligned_cols=116 Identities=12% Similarity=0.052 Sum_probs=67.3
Q ss_pred eCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCCCC
Q 005240 38 WSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTM 117 (706)
Q Consensus 38 ~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~ 117 (706)
.+|||++| |+.+ ....+|.++|+++++..++...+.. .++..+.++|||+++|+........ +
T Consensus 79 gtpDGr~l-fV~d--------~~~~rVavIDl~t~k~~~ii~iP~g---~gphgi~~spdg~t~YV~~~~~~~v-~---- 141 (441)
T d1qnia2 79 GRYDGKYL-FIND--------KANTRVARIRLDIMKTDKITHIPNV---QAIHGLRLQKVPKTNYVFCNAEFVI-P---- 141 (441)
T ss_dssp TEEEEEEE-EEEE--------TTTTEEEEEETTTTEEEEEEECTTC---CCEEEEEECCSSBCCEEEEEECSCE-E----
T ss_pred ccCCCCEE-EEEc--------CCCCEEEEEECCCCcEeeEEecCCC---CCccceEEeccCCEEEEEeccCCcc-c----
Confidence 47999998 5543 4567899999999988776543321 1256789999999766543211110 0
Q ss_pred CCCCCceeecCCCcccccccchhccCCchhhhhhhh-cccceEEEEccCC-C-ceecCCCceEeeeeeCCCCcEEEEEee
Q 005240 118 VPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDY-YTTAQLVLGSLDG-T-AKDFGTPAVYTAVEPSPDQKYVLITSM 194 (706)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~l~~~~l~g-~-~~~lt~~~~~~~~~~SpDG~~i~~~~~ 194 (706)
...++..... .....+-.+|... + ..++.-+.....+.++|||+++++++.
T Consensus 142 --------------------------~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~ 195 (441)
T d1qnia2 142 --------------------------QPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCY 195 (441)
T ss_dssp --------------------------SSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEES
T ss_pred --------------------------ccCcccccccccccceEEeecCccceeeEEEecCCCccceEECCCCCEEEEEec
Confidence 0000000000 0112344456532 2 233433456778999999999988776
Q ss_pred cc
Q 005240 195 HR 196 (706)
Q Consensus 195 ~~ 196 (706)
..
T Consensus 196 ns 197 (441)
T d1qnia2 196 NS 197 (441)
T ss_dssp CT
T ss_pred CC
Confidence 53
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.44 E-value=4.2e-05 Score=74.79 Aligned_cols=60 Identities=15% Similarity=0.182 Sum_probs=36.4
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecc--cCCCccccccccceEEecCCcEEEEE
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLF--ESPDICLNAVFGSFVWVNNSTLLIFT 104 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt--~~~~~~~~~~~~~~~wSpDg~~l~~~ 104 (706)
.+..++|||||++||..+. ++...||-++.......... .+.. .+..++|+|++..++++
T Consensus 13 ~I~~l~fsp~~~~L~s~s~--------Dg~v~iwd~~~~~~~~~~~~~~~h~~-----~V~~v~f~~~~~~~l~s 74 (342)
T d1yfqa_ 13 YISDIKIIPSKSLLLITSW--------DGSLTVYKFDIQAKNVDLLQSLRYKH-----PLLCCNFIDNTDLQIYV 74 (342)
T ss_dssp CEEEEEEEGGGTEEEEEET--------TSEEEEEEEETTTTEEEEEEEEECSS-----CEEEEEEEESSSEEEEE
T ss_pred CEEEEEEeCCCCEEEEEEC--------CCeEEEEEccCCCcceEEEEecCCCC-----CEEEEEEeCCCCCEEEE
Confidence 5889999999999988653 44445554443222222221 1222 27789999987654444
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.42 E-value=3.3e-05 Score=76.27 Aligned_cols=200 Identities=7% Similarity=-0.022 Sum_probs=101.8
Q ss_pred eeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeeccc-CCCccccccccceEEecCCcEEEEEecCCCCCCCCC
Q 005240 37 SWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFE-SPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKK 115 (706)
Q Consensus 37 ~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~-~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~ 115 (706)
.+++||++||.... + ..|.++|+.+++..+... +.. .+..++|+|++ .|+..+.+
T Consensus 18 c~~~~~~~l~tgs~--------D--g~i~vWd~~~~~~~~~l~~H~~-----~V~~l~~s~~~-~l~s~s~D-------- 73 (355)
T d1nexb2 18 CLQFEDNYVITGAD--------D--KMIRVYDSINKKFLLQLSGHDG-----GVWALKYAHGG-ILVSGSTD-------- 73 (355)
T ss_dssp EEEEETTEEEEEET--------T--TEEEEEETTTTEEEEEEECCSS-----CEEEEEEETTT-EEEEEETT--------
T ss_pred EEEECCCEEEEEeC--------C--CeEEEEECCCCcEEEEEECCCC-----CEEEEEEcCCC-EEEEEecc--------
Confidence 47889998876542 2 467778998887654432 222 37789999976 45544321
Q ss_pred CCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccC-CCce-ecCCC---ceEeeeeeCCCCcEEE
Q 005240 116 TMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD-GTAK-DFGTP---AVYTAVEPSPDQKYVL 190 (706)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~-g~~~-~lt~~---~~~~~~~~SpDG~~i~ 190 (706)
+.|.++++. ++.. ..... .......++|+++.++
T Consensus 74 -----------------------------------------~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (355)
T d1nexb2 74 -----------------------------------------RTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIV 112 (355)
T ss_dssp -----------------------------------------CCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEE
T ss_pred -----------------------------------------cccccccccccccccccccccccccccccccccccceee
Confidence 345566663 2222 11111 2344566889999888
Q ss_pred EEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccC--------cc-CCCCcceeeecCCCceEEEEE
Q 005240 191 ITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYN--------SV-REGMRSISWRADKPSTLYWVE 261 (706)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~--------~~-~~g~~~~~~spdg~~~l~~~~ 261 (706)
..+.. ..|.+|++...................... .. .....-..+.++++. ++..
T Consensus 113 ~~~~d-------------~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~- 177 (355)
T d1nexb2 113 TGSRD-------------NTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNI-VVSG- 177 (355)
T ss_dssp EEETT-------------SEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTE-EEEE-
T ss_pred eecCC-------------CcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccce-eeee-
Confidence 76654 368889887543221111100000000000 00 000001233444443 2211
Q ss_pred eccCCCCccccCccceeeeecCCCCCCCCceE-EeecccccccceecCCCceEEEEeeccccceEEEEEcCCCC
Q 005240 262 AQDRGDANVEVSPRDIIYTQPAEPAEGEKPEI-LHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK 334 (706)
Q Consensus 262 ~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~-l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~ 334 (706)
. ....+..+|+ ..++... ............|+|++..++..+.+ ..|.+++..++
T Consensus 178 ~-----------~d~~i~~~d~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d----~~i~i~d~~~~ 233 (355)
T d1nexb2 178 S-----------YDNTLIVWDV---AQMKCLYILSGHTDRIYSTIYDHERKRCISASMD----TTIRIWDLENG 233 (355)
T ss_dssp E-----------TTSCEEEEET---TTTEEEEEECCCSSCEEEEEEETTTTEEEEEETT----SCEEEEETTTC
T ss_pred c-----------ccceeeeeec---ccccceeeeeccccccccccccccceeeeccccc----ceEEeeecccc
Confidence 1 1124667777 3333322 23345566778899999988876522 23667777764
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.38 E-value=1.2e-05 Score=81.06 Aligned_cols=136 Identities=8% Similarity=-0.072 Sum_probs=70.0
Q ss_pred ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeE---EcccCCC-----CCCCCcccCccCCCCcc
Q 005240 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR---ELCDLPP-----AEDIPVCYNSVREGMRS 246 (706)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---~l~~~~~-----~~~~p~~~~~~~~g~~~ 246 (706)
.....++++|||++++++... ...|.+|+++++... .....+. ....+... ....+...
T Consensus 193 ~gPr~i~f~pdg~~~yv~~e~------------~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 259 (365)
T d1jofa_ 193 DHPRWVAMHPTGNYLYALMEA------------GNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETG-KGLYRADV 259 (365)
T ss_dssp CCEEEEEECTTSSEEEEEETT------------TTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTS-SBSEEEEE
T ss_pred CceEEEEECCCCceEEEeccC------------CCEEEEEEecCCCceEEEEeeeeccccccccccccccc-cccCCccc
Confidence 567789999999988766543 357888888754321 1111110 00000000 00011236
Q ss_pred eeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEe---e---cccccccceecC-CCceEEEEeec
Q 005240 247 ISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH---K---LDLRFRSVSWCD-DSLALVNETWY 319 (706)
Q Consensus 247 ~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~---~---~~~~~~~~~wsp-Dg~~l~~~~~~ 319 (706)
+.++|||+. ||.. +...... ....|..+.++ ..+....+. . .......++++| ||++|+++. .
T Consensus 260 i~~spdG~~-lyvs-nr~~~~~-----~~~~i~~~~~~--~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~-~ 329 (365)
T d1jofa_ 260 CALTFSGKY-MFAS-SRANKFE-----LQGYIAGFKLR--DCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITD-D 329 (365)
T ss_dssp EEECTTSSE-EEEE-EEESSTT-----SCCEEEEEEEC--TTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEEC-S
T ss_pred eEECCCCCE-EEEE-cccCCCc-----cceEEEEEEec--CCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEe-C
Confidence 789999997 6644 3321111 11124344442 233333321 1 123456688998 789887764 4
Q ss_pred cccceEEEEEcCCC
Q 005240 320 KTSQTRTWLVCPGS 333 (706)
Q Consensus 320 ~~~~~~l~~~d~~~ 333 (706)
.++...+|.++-++
T Consensus 330 ~s~~v~v~~~~~~~ 343 (365)
T d1jofa_ 330 QEGWLEIYRWKDEF 343 (365)
T ss_dssp SSCEEEEEEEETTE
T ss_pred CCCeEEEEEEeCCc
Confidence 44566677776443
|
| >d1tcaa_ c.69.1.17 (A:) Triacylglycerol lipase {Yeast (Candida antarctica), form b [TaxId: 34362]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Triacylglycerol lipase species: Yeast (Candida antarctica), form b [TaxId: 34362]
Probab=98.36 E-value=1.2e-06 Score=85.56 Aligned_cols=84 Identities=10% Similarity=-0.084 Sum_probs=63.5
Q ss_pred hHHHHHHHCCeEEEEcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCC
Q 005240 546 TSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH 625 (706)
Q Consensus 546 ~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~ 625 (706)
.+.+.|+++||.|+..+.. |+|.. ......+++..+|+++.++. ..++|.|+||||||.++.+++.++|+
T Consensus 51 ~~~~~L~~~Gy~v~~~d~~---g~g~~-----d~~~sae~la~~i~~v~~~~--g~~kV~lVGhS~GG~~a~~~l~~~p~ 120 (317)
T d1tcaa_ 51 NWIPLSTQLGYTPCWISPP---PFMLN-----DTQVNTEYMVNAITALYAGS--GNNKLPVLTWSQGGLVAQWGLTFFPS 120 (317)
T ss_dssp THHHHHHTTTCEEEEECCT---TTTCS-----CHHHHHHHHHHHHHHHHHHT--TSCCEEEEEETHHHHHHHHHHHHCGG
T ss_pred HHHHHHHhCCCeEEEecCC---CCCCC-----chHhHHHHHHHHHHHHHHhc--cCCceEEEEeCchHHHHHHHHHHCCC
Confidence 3578889999999986664 33322 13344567778888887763 23689999999999999999999874
Q ss_pred ---ceeEEEeccCCCCC
Q 005240 626 ---LFCCGIARSGSYNK 639 (706)
Q Consensus 626 ---~~~a~v~~~~~~d~ 639 (706)
+++.+|++++.+.-
T Consensus 121 ~~~~V~~~v~i~~~~~G 137 (317)
T d1tcaa_ 121 IRSKVDRLMAFAPDYKG 137 (317)
T ss_dssp GTTTEEEEEEESCCTTC
T ss_pred cchheeEEEEeCCCCCC
Confidence 68999999886553
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.36 E-value=0.00011 Score=70.03 Aligned_cols=179 Identities=12% Similarity=-0.052 Sum_probs=117.6
Q ss_pred eeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhc
Q 005240 62 LRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNL 141 (706)
Q Consensus 62 ~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (706)
.+|..+++++.+...+...... +..+.+.+..++||++-.
T Consensus 10 ~~I~~~~l~~~~~~~~~~~~~~-----~~~id~d~~~~~lYw~D~----------------------------------- 49 (266)
T d1ijqa1 10 HEVRKMTLDRSEYTSLIPNLRN-----VVALDTEVASNRIYWSDL----------------------------------- 49 (266)
T ss_dssp SSEEEEETTSCCCEEEECSCSS-----EEEEEEETTTTEEEEEET-----------------------------------
T ss_pred CeEEEEECCCCcceeeeCCCCc-----eEEEEEEeCCCEEEEEEC-----------------------------------
Confidence 5799999999887777533322 456788888888887621
Q ss_pred cCCchhhhhhhhcccceEEEEccCC-----Ccee-cCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEE
Q 005240 142 LKDEYDESLFDYYTTAQLVLGSLDG-----TAKD-FGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVW 214 (706)
Q Consensus 142 ~~~~~d~~~~~~~~~~~l~~~~l~g-----~~~~-lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~ 214 (706)
....|++.+++| ..+. +... .....+++.+-++.|+++... ...|.++
T Consensus 50 -------------~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~------------~~~I~v~ 104 (266)
T d1ijqa1 50 -------------SQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSV------------LGTVSVA 104 (266)
T ss_dssp -------------TTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETT------------TTEEEEE
T ss_pred -------------CCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecC------------CCEEEeE
Confidence 114677777754 1222 2333 455678888889999887543 2589999
Q ss_pred ecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEE
Q 005240 215 TTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEIL 294 (706)
Q Consensus 215 ~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l 294 (706)
+++|...+.+...... .+..++..|.... |||.... . ...|++++. ++...+.+
T Consensus 105 ~~~g~~~~~~~~~~~~------------~P~~l~vd~~~g~-ly~~~~~---~-------~~~I~r~~~---dGs~~~~l 158 (266)
T d1ijqa1 105 DTKGVKRKTLFRENGS------------KPRAIVVDPVHGF-MYWTDWG---T-------PAKIKKGGL---NGVDIYSL 158 (266)
T ss_dssp ETTSSSEEEEEECTTC------------CEEEEEEETTTTE-EEEEECS---S-------SCEEEEEET---TSCCEEEE
T ss_pred ecCCceEEEEEcCCCC------------CcceEEEEcccCe-EEEeccC---C-------CcceeEecc---CCCceecc
Confidence 9998876665543321 1346777886665 8877421 1 125888888 67677766
Q ss_pred eec-ccccccceecCCCceEEEEeeccccceEEEEEcCCCC
Q 005240 295 HKL-DLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK 334 (706)
Q Consensus 295 ~~~-~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~ 334 (706)
... -.....+++.+.+..|++... ....|+.+++++.
T Consensus 159 ~~~~~~~p~gl~iD~~~~~lYw~d~---~~~~I~~~~~dG~ 196 (266)
T d1ijqa1 159 VTENIQWPNGITLDLLSGRLYWVDS---KLHSISSIDVNGG 196 (266)
T ss_dssp ECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSC
T ss_pred cccccceeeEEEeeccccEEEEecC---CcCEEEEEECCCC
Confidence 543 344567889888999998742 3457999999884
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.33 E-value=0.00013 Score=71.40 Aligned_cols=65 Identities=18% Similarity=0.074 Sum_probs=39.0
Q ss_pred eeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEE
Q 005240 22 KEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLL 101 (706)
Q Consensus 22 ~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l 101 (706)
+.++++... +.. .+++||++||-.+. + ..|.++|+.+++..+...... ..+..+.|+|+ .|
T Consensus 10 ~~l~GH~~~--V~s-~~~~~g~~l~sgs~--------D--g~i~vWd~~~~~~~~~~~~h~----~~V~~v~~~~~--~l 70 (342)
T d2ovrb2 10 KVLKGHDDH--VIT-CLQFCGNRIVSGSD--------D--NTLKVWSAVTGKCLRTLVGHT----GGVWSSQMRDN--II 70 (342)
T ss_dssp EEEECSTTS--CEE-EEEEETTEEEEEET--------T--SCEEEEETTTCCEEEECCCCS----SCEEEEEEETT--EE
T ss_pred EEECCcCCc--eEE-EEEECCCEEEEEeC--------C--CeEEEEECCCCCEEEEEeCCC----CCEEEEEeCCC--cc
Confidence 345543333 433 58899999876542 3 457777998887655433222 13677888875 55
Q ss_pred EEEe
Q 005240 102 IFTI 105 (706)
Q Consensus 102 ~~~~ 105 (706)
+..+
T Consensus 71 ~s~s 74 (342)
T d2ovrb2 71 ISGS 74 (342)
T ss_dssp EEEE
T ss_pred ccce
Confidence 5443
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.29 E-value=0.00031 Score=68.86 Aligned_cols=81 Identities=12% Similarity=0.094 Sum_probs=47.1
Q ss_pred ceeEeecCCCCCCCCee-eeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCcc
Q 005240 6 GIGIHRLLPDDSLGPEK-EVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (706)
Q Consensus 6 ~~~~~~~~~~~~~g~~~-~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~ 84 (706)
.|.|+|+.. ++.. .++.+ ...+..++||||+ .|+... ....|.+++....+..........
T Consensus 34 ~i~vWd~~~----~~~~~~l~~H--~~~V~~l~~s~~~-~l~s~s----------~D~~i~iw~~~~~~~~~~~~~~~~- 95 (355)
T d1nexb2 34 MIRVYDSIN----KKFLLQLSGH--DGGVWALKYAHGG-ILVSGS----------TDRTVRVWDIKKGCCTHVFEGHNS- 95 (355)
T ss_dssp EEEEEETTT----TEEEEEEECC--SSCEEEEEEETTT-EEEEEE----------TTCCEEEEETTTTEEEEEECCCSS-
T ss_pred eEEEEECCC----CcEEEEEECC--CCCEEEEEEcCCC-EEEEEe----------cccccccccccccccccccccccc-
Confidence 588999866 5432 23322 2358899999975 555433 224677777777665444322221
Q ss_pred ccccccceEEecCCcEEEEEe
Q 005240 85 LNAVFGSFVWVNNSTLLIFTI 105 (706)
Q Consensus 85 ~~~~~~~~~wSpDg~~l~~~~ 105 (706)
........++++++.++..+
T Consensus 96 -~~~~~~~~~~~~~~~~~~~~ 115 (355)
T d1nexb2 96 -TVRCLDIVEYKNIKYIVTGS 115 (355)
T ss_dssp -CEEEEEEEEETTEEEEEEEE
T ss_pred -cccccccccccccceeeeec
Confidence 11123456788998887764
|
| >d1ex9a_ c.69.1.18 (A:) Lipase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Bacterial lipase domain: Lipase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.28 E-value=1.7e-06 Score=83.88 Aligned_cols=80 Identities=16% Similarity=0.088 Sum_probs=55.9
Q ss_pred hHHHHHHHCCeEEEEcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCC
Q 005240 546 TSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH 625 (706)
Q Consensus 546 ~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~ 625 (706)
.....|.+.||.|+.++.. |+|.. +...+++...|+.+.+. ...+++.++||||||.++.+++.+.|+
T Consensus 30 ~i~~~L~~~G~~v~~~~~~---~~~~~-------~~~a~~l~~~i~~~~~~--~g~~~v~ligHS~GG~~~r~~~~~~p~ 97 (285)
T d1ex9a_ 30 GIPSALRRDGAQVYVTEVS---QLDTS-------EVRGEQLLQQVEEIVAL--SGQPKVNLIGHSHGGPTIRYVAAVRPD 97 (285)
T ss_dssp THHHHHHHTTCCEEEECCC---SSSCH-------HHHHHHHHHHHHHHHHH--HCCSCEEEEEETTHHHHHHHHHHHCGG
T ss_pred HHHHHHHhCCCEEEEeCCC---CCCCc-------HHHHHHHHHHHHHHHHH--cCCCeEEEEEECccHHHHHHHHHHCCc
Confidence 3567788999999986664 33321 11122333333333332 134689999999999999999999999
Q ss_pred ceeEEEeccCCC
Q 005240 626 LFCCGIARSGSY 637 (706)
Q Consensus 626 ~~~a~v~~~~~~ 637 (706)
+++.++..+...
T Consensus 98 ~v~~lv~i~tPh 109 (285)
T d1ex9a_ 98 LIASATSVGAPH 109 (285)
T ss_dssp GEEEEEEESCCT
T ss_pred cceeEEEECCCC
Confidence 999999987653
|
| >d1qo7a_ c.69.1.11 (A:) Bacterial epoxide hydrolase {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Epoxide hydrolase domain: Bacterial epoxide hydrolase species: Aspergillus niger [TaxId: 5061]
Probab=98.26 E-value=3e-06 Score=86.74 Aligned_cols=116 Identities=9% Similarity=-0.092 Sum_probs=76.8
Q ss_pred CCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCC------eEEEEcCCC
Q 005240 491 DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARR------FAVLAGPSI 564 (706)
Q Consensus 491 dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G------~~v~~~~~~ 564 (706)
||..|+..-....+ ++ .|.||++||-|. ++..+ ...+..|++.| |.|++++-+
T Consensus 90 ~G~~iHf~h~~~~~--~~----~~pLlLlHG~P~-----------s~~~w----~~vi~~La~~g~~~~~~f~VIaPDLp 148 (394)
T d1qo7a_ 90 EGLTIHFAALFSER--ED----AVPIALLHGWPG-----------SFVEF----YPILQLFREEYTPETLPFHLVVPSLP 148 (394)
T ss_dssp TTEEEEEEEECCSC--TT----CEEEEEECCSSC-----------CGGGG----HHHHHHHHHHCCTTTCCEEEEEECCT
T ss_pred CCEEEEEEEEeccC--CC----CCEEEEeccccc-----------cHHHH----HHHHHhhccccCCcccceeeeccccc
Confidence 89999987665543 11 356778999653 11222 24556788777 999996655
Q ss_pred CcCCCCCCCCc----hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCC
Q 005240 565 PIIGEGDKLPN----DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 636 (706)
Q Consensus 565 ~~~g~g~~~~~----~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~ 636 (706)
|||.+... .........|+...++.+ .-.+..+.|+|+||.++..++..+|+.+++++.....
T Consensus 149 ---G~G~S~~P~~~~~y~~~~~a~~~~~l~~~l------g~~~~~~vg~~~Gg~v~~~~a~~~p~~~~~~~l~~~~ 215 (394)
T d1qo7a_ 149 ---GYTFSSGPPLDKDFGLMDNARVVDQLMKDL------GFGSGYIIQGGDIGSFVGRLLGVGFDACKAVHLNLCA 215 (394)
T ss_dssp ---TSTTSCCCCSSSCCCHHHHHHHHHHHHHHT------TCTTCEEEEECTHHHHHHHHHHHHCTTEEEEEESCCC
T ss_pred ---ccCCCCCCCCCCccCHHHHHHHHHHHHhhc------cCcceEEEEecCchhHHHHHHHHhhccccceeEeeec
Confidence 66766542 112344454444443332 2367889999999999999999999988887776543
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.25 E-value=0.00012 Score=69.53 Aligned_cols=138 Identities=18% Similarity=0.146 Sum_probs=91.5
Q ss_pred ceEEEEccCC-Cceec-CCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCC
Q 005240 157 AQLVLGSLDG-TAKDF-GTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDI 233 (706)
Q Consensus 157 ~~l~~~~l~g-~~~~l-t~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~ 233 (706)
..|++++++| ..+.+ ..+ ..+..+++..-++.|+++... ...|.+++++++..+.|.....
T Consensus 58 ~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~------------~~~I~~~~~dg~~~~~l~~~~l---- 121 (263)
T d1npea_ 58 PSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQ------------LDRIEVAKMDGTQRRVLFDTGL---- 121 (263)
T ss_dssp TEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETT------------TTEEEEEETTSCSCEEEECSSC----
T ss_pred CeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccC------------CCEEEEEecCCceEEEEecccc----
Confidence 6799999977 44443 333 567788888778899887644 3589999999887666654321
Q ss_pred CcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeec-ccccccceecCCCce
Q 005240 234 PVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL-DLRFRSVSWCDDSLA 312 (706)
Q Consensus 234 p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~-~~~~~~~~wspDg~~ 312 (706)
..+..++..|.... |||.... . ....|++++. ++...+.+... -.....+++.+.+..
T Consensus 122 --------~~p~~l~vdp~~g~-ly~t~~~-~--------~~~~I~r~~~---dG~~~~~i~~~~~~~P~glaiD~~~~~ 180 (263)
T d1npea_ 122 --------VNPRGIVTDPVRGN-LYWTDWN-R--------DNPKIETSHM---DGTNRRILAQDNLGLPNGLTFDAFSSQ 180 (263)
T ss_dssp --------SSEEEEEEETTTTE-EEEEECC-S--------SSCEEEEEET---TSCCCEEEECTTCSCEEEEEEETTTTE
T ss_pred --------cCCcEEEEecccCc-EEEeecC-C--------CCcEEEEecC---CCCCceeeeeecccccceEEEeecCcE
Confidence 12346788887776 8776421 1 1124888887 66666666533 233456778788888
Q ss_pred EEEEeeccccceEEEEEcCCCC
Q 005240 313 LVNETWYKTSQTRTWLVCPGSK 334 (706)
Q Consensus 313 l~~~~~~~~~~~~l~~~d~~~~ 334 (706)
|++... +...|..+++++.
T Consensus 181 lYw~d~---~~~~I~~~~~~g~ 199 (263)
T d1npea_ 181 LCWVDA---GTHRAECLNPAQP 199 (263)
T ss_dssp EEEEET---TTTEEEEEETTEE
T ss_pred EEEEeC---CCCEEEEEECCCC
Confidence 888642 3457999999874
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.22 E-value=9.2e-05 Score=71.87 Aligned_cols=218 Identities=11% Similarity=0.035 Sum_probs=124.3
Q ss_pred CCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCC
Q 005240 19 GPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNS 98 (706)
Q Consensus 19 g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg 98 (706)
++.+... ++.. .....+.+||+.++-. ...|+++|.++++.+.+.......-...+.+....|+|
T Consensus 50 g~~~~~~-~~~~--~~~i~~~~dg~l~va~------------~~gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G 114 (295)
T d2ghsa1 50 GRKTVHA-LPFM--GSALAKISDSKQLIAS------------DDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSG 114 (295)
T ss_dssp TEEEEEE-CSSC--EEEEEEEETTEEEEEE------------TTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTS
T ss_pred CeEEEEE-CCCC--cEEEEEecCCCEEEEE------------eCccEEeecccceeeEEeeeecCCCcccceeeEECCCC
Confidence 5544443 4443 6678888898766442 14699999999998887643322111124567788999
Q ss_pred cEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCCCceecCCC-ceE
Q 005240 99 TLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTP-AVY 177 (706)
Q Consensus 99 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g~~~~lt~~-~~~ 177 (706)
+ |++......... ....+|.++ +|+.+++... ...
T Consensus 115 ~-iw~~~~~~~~~~------------------------------------------~~g~l~~~~-~g~~~~~~~~~~~~ 150 (295)
T d2ghsa1 115 A-LWIGTMGRKAET------------------------------------------GAGSIYHVA-KGKVTKLFADISIP 150 (295)
T ss_dssp C-EEEEEEETTCCT------------------------------------------TCEEEEEEE-TTEEEEEEEEESSE
T ss_pred C-EEEEeccccccc------------------------------------------cceeEeeec-CCcEEEEeeccCCc
Confidence 8 455532211100 124555544 5655555544 455
Q ss_pred eeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCe------eEEcccCCCCCCCCcccCccCCCCcceeeec
Q 005240 178 TAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL------VRELCDLPPAEDIPVCYNSVREGMRSISWRA 251 (706)
Q Consensus 178 ~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~------~~~l~~~~~~~~~p~~~~~~~~g~~~~~~sp 251 (706)
..+.||||++.++++.... ..|+.++++... ........... .++..+....
T Consensus 151 Ng~~~s~d~~~l~~~dt~~------------~~I~~~~~d~~~~~~~~~~~~~~~~~~~~----------g~pdG~~vD~ 208 (295)
T d2ghsa1 151 NSICFSPDGTTGYFVDTKV------------NRLMRVPLDARTGLPTGKAEVFIDSTGIK----------GGMDGSVCDA 208 (295)
T ss_dssp EEEEECTTSCEEEEEETTT------------CEEEEEEBCTTTCCBSSCCEEEEECTTSS----------SEEEEEEECT
T ss_pred ceeeecCCCceEEEeeccc------------ceeeEeeecccccccccceEEEeccCccc----------ccccceEEcC
Confidence 6899999999998887653 478888876321 12222222111 1133556666
Q ss_pred CCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceec-CCCceEEEEeeccc---------
Q 005240 252 DKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWC-DDSLALVNETWYKT--------- 321 (706)
Q Consensus 252 dg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~ws-pDg~~l~~~~~~~~--------- 321 (706)
+|. |++.. . ..+.|.++|. ++.....+.-.......++|- +|.+.|++++...+
T Consensus 209 ~Gn--lWva~-~----------~~g~V~~~dp---~G~~~~~i~lP~~~~T~~~FGG~d~~~LyvTta~~~~~~~~~~~~ 272 (295)
T d2ghsa1 209 EGH--IWNAR-W----------GEGAVDRYDT---DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSAREHLDDDAITAN 272 (295)
T ss_dssp TSC--EEEEE-E----------TTTEEEEECT---TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBCTTCCHHHHHHC
T ss_pred CCC--EEeee-e----------CCCceEEecC---CCcEeeEecCCCCceEEEEEeCCCCCEEEEEECCcCCChhHhccC
Confidence 665 44332 1 1234777776 544444443333567778885 78888887753321
Q ss_pred -cceEEEEEcCCC
Q 005240 322 -SQTRTWLVCPGS 333 (706)
Q Consensus 322 -~~~~l~~~d~~~ 333 (706)
....||.+++..
T Consensus 273 p~~G~l~~~~~~~ 285 (295)
T d2ghsa1 273 PQHGLTFELGIEV 285 (295)
T ss_dssp TTTTCEEECSSCC
T ss_pred CCCceEEEEcCCC
Confidence 124588887654
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.19 E-value=5.5e-06 Score=84.33 Aligned_cols=93 Identities=13% Similarity=-0.074 Sum_probs=61.2
Q ss_pred ccceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeecccc--------cc-ccCCceeEEEEEcCCCce
Q 005240 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEE--------DN-VSSCKLRVWIADAETGEA 74 (706)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~--------~~-~~~~~~~l~~~d~~~g~~ 74 (706)
.+.|.+.|++. ++..++..+|.+......++||||++++........ .. .......+-.+|.++.+.
T Consensus 93 ~~rVavIDl~t----~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v 168 (441)
T d1qnia2 93 NTRVARIRLDI----MKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDV 168 (441)
T ss_dssp TTEEEEEETTT----TEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSE
T ss_pred CCEEEEEECCC----CcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCcccee
Confidence 35688899987 888888878888888899999999987554431100 00 001113345577777654
Q ss_pred -eecccCCCccccccccceEEecCCcEEEEEec
Q 005240 75 -KPLFESPDICLNAVFGSFVWVNNSTLLIFTIP 106 (706)
Q Consensus 75 -~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~ 106 (706)
.++.- +. ....+.++|||++++++..
T Consensus 169 ~~qI~v-~~-----~p~~v~~spdGk~a~vt~~ 195 (441)
T d1qnia2 169 AWQVIV-DG-----NLDNTDADYTGKYATSTCY 195 (441)
T ss_dssp EEEEEE-SS-----CCCCEEECSSSSEEEEEES
T ss_pred eEEEec-CC-----CccceEECCCCCEEEEEec
Confidence 33422 22 2678899999999887753
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.18 E-value=0.00012 Score=71.36 Aligned_cols=36 Identities=14% Similarity=0.156 Sum_probs=27.1
Q ss_pred ceEEEEccCCCceecCCC-ceEeeeeeCCCCcEEEEEe
Q 005240 157 AQLVLGSLDGTAKDFGTP-AVYTAVEPSPDQKYVLITS 193 (706)
Q Consensus 157 ~~l~~~~l~g~~~~lt~~-~~~~~~~~SpDG~~i~~~~ 193 (706)
.+||+++.+|+.+.+... .....++++|||+. ++..
T Consensus 49 ~~I~~i~p~g~~~~~~~~~~~~~gla~~~dG~l-~v~~ 85 (302)
T d2p4oa1 49 GEIVSITPDGNQQIHATVEGKVSGLAFTSNGDL-VATG 85 (302)
T ss_dssp TEEEEECTTCCEEEEEECSSEEEEEEECTTSCE-EEEE
T ss_pred CEEEEEeCCCCEEEEEcCCCCcceEEEcCCCCe-EEEe
Confidence 689999998866655544 67889999999984 4443
|
| >d2d81a1 c.69.1.37 (A:21-338) Polyhydroxybutyrate depolymerase {Penicillium funiculosum [TaxId: 28572]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PHB depolymerase-like domain: Polyhydroxybutyrate depolymerase species: Penicillium funiculosum [TaxId: 28572]
Probab=98.16 E-value=7.1e-07 Score=87.25 Aligned_cols=100 Identities=18% Similarity=0.246 Sum_probs=67.3
Q ss_pred CCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEe-ccCC-CC----CCC-------CCcc-------------------
Q 005240 598 VADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIA-RSGS-YN----KTL-------TPFG------------------- 645 (706)
Q Consensus 598 ~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~-~~~~-~d----~~~-------~~~~------------------- 645 (706)
-|||+||+|+|+|+||+||+.++..+|++|+++++ +++. +. ... .+..
T Consensus 7 ~iDp~rI~V~G~SsGG~mA~~la~a~sd~f~aga~vvAg~p~~ca~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 86 (318)
T d2d81a1 7 NVNPNSVSVSGLASGGYMAAQLGVAYSDVFNVGFGVFAGGPYDCARNQYYTSCMYNGYPSITTPTANMKSWSGNQIASVA 86 (318)
T ss_dssp CEEEEEEEEEEETHHHHHHHHHHHHTTTTSCSEEEEESCCCTTTTSSSCGGGGSTTCCCCCHHHHHHHHHHBTTTBCCGG
T ss_pred CCCccceEEEEECHHHHHHHHHHHhcccceeeeEEEeccCchhhhcccchHHHhhcCCCCCcChhHHHHHHhhcCCcchh
Confidence 38999999999999999999999999999975443 3332 11 000 0000
Q ss_pred ---------c-----------hHHHHHHHHHhCC--CcEEEEEeCCCCccCCCcc-----c-------------HHHHHH
Q 005240 646 ---------F-----------QAERFFDALKGHG--ALSRLVLLPFEHHVYAARE-----N-------------VMHVIW 685 (706)
Q Consensus 646 ---------~-----------~~~~~~~~l~~~~--~~~~~~~~~~~~H~~~~~~-----~-------------~~~~~~ 685 (706)
+ +.++++++|+..+ .+++++.+++++|.|-... . ..+...
T Consensus 87 ~~~~~pvll~hG~~D~~Vpp~~s~~l~~~l~~~~~~~~v~yv~~~gagH~fpT~~~g~g~~~c~~~~~pyi~~C~~d~a~ 166 (318)
T d2d81a1 87 NLGQRKIYMWTGSSDTTVGPNVMNQLKAQLGNFDNSANVSYVTTTGAVHTFPTDFNGAGDNSCSLSTSPYISNCNYDGAG 166 (318)
T ss_dssp GGGGCEEEEEEETTCCSSCHHHHHHHHHHHTTTSCGGGEEEEEETTCCSSEEESSCCTTCCCTTSCCTTCEEECSSCHHH
T ss_pred ccCCCCEEEEecCCCCCcCHHHHHHHHHHHHcCcCCCceEEEEeCCCCCCCCCCCCCcccccccccCChhhhcCCCcHHH
Confidence 0 1228888998764 4688999999999883211 0 113447
Q ss_pred HHHHHHHHHhcc
Q 005240 686 ETDRWLQKYCLS 697 (706)
Q Consensus 686 ~~~~f~~~~l~~ 697 (706)
+|++||---|+.
T Consensus 167 ~iL~~~yg~~~~ 178 (318)
T d2d81a1 167 AALKWIYGSLNA 178 (318)
T ss_dssp HHHHHHHSSCCC
T ss_pred HHHHHHhcccCc
Confidence 788887666654
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.15 E-value=2.9e-05 Score=79.00 Aligned_cols=132 Identities=9% Similarity=0.004 Sum_probs=74.1
Q ss_pred ceEEEEcc-CCCc-ee------cCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCe-eEEccc
Q 005240 157 AQLVLGSL-DGTA-KD------FGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL-VRELCD 226 (706)
Q Consensus 157 ~~l~~~~l-~g~~-~~------lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~ 226 (706)
+.|.++|+ +++. .. +... ..+..++|||||+.|+..+.+.. ...|.+||++.++ ...|..
T Consensus 205 g~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t----------~~~i~lwd~~~g~~~~~l~~ 274 (393)
T d1sq9a_ 205 GTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNS----------FGCITLYETEFGERIGSLSV 274 (393)
T ss_dssp SEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETT----------EEEEEEEETTTCCEEEEECB
T ss_pred CcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCC----------cceeeecccccceeeeeecc
Confidence 46777777 4422 11 1222 56889999999999987765432 1368899998554 444433
Q ss_pred CCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCc-eEEeeccccc----
Q 005240 227 LPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP-EILHKLDLRF---- 301 (706)
Q Consensus 227 ~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~-~~l~~~~~~~---- 301 (706)
.................+..++|+|||+. |+-. .. ...|.+||+ ++++. ..|..+...+
T Consensus 275 ~~~~~~~~~~~~gH~~~V~~l~fspd~~~-l~S~-s~-----------D~~v~vWd~---~~g~~~~~l~gH~~~v~~~~ 338 (393)
T d1sq9a_ 275 PTHSSQASLGEFAHSSWVMSLSFNDSGET-LCSA-GW-----------DGKLRFWDV---KTKERITTLNMHCDDIEIEE 338 (393)
T ss_dssp C--------CCBSBSSCEEEEEECSSSSE-EEEE-ET-----------TSEEEEEET---TTTEEEEEEECCGGGCSSGG
T ss_pred ccccccceeeeecccCceeeeccCCCCCe-eEEE-CC-----------CCEEEEEEC---CCCCEEEEECCcCCcccCCc
Confidence 22111111111111123557899999986 4422 11 125889998 55544 3455444433
Q ss_pred ccceecCCCceEE
Q 005240 302 RSVSWCDDSLALV 314 (706)
Q Consensus 302 ~~~~wspDg~~l~ 314 (706)
..+.|+|+|..++
T Consensus 339 ~~~~~~~~~~~~~ 351 (393)
T d1sq9a_ 339 DILAVDEHGDSLA 351 (393)
T ss_dssp GCCCBCTTSCBCS
T ss_pred cEEEECCCCCEEE
Confidence 3578999988654
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.12 E-value=0.00079 Score=63.80 Aligned_cols=222 Identities=11% Similarity=0.055 Sum_probs=135.9
Q ss_pred ceeEeecCCCCCCCCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCc----eeecccCC
Q 005240 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE----AKPLFESP 81 (706)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~----~~~lt~~~ 81 (706)
.|.-.+++. .....+. +.......+.|.+..++|+++. .....|+..++++.. .+.+....
T Consensus 11 ~I~~~~l~~----~~~~~~~--~~~~~~~~id~d~~~~~lYw~D---------~~~~~I~~~~l~~~~~~~~~~~~~~~~ 75 (266)
T d1ijqa1 11 EVRKMTLDR----SEYTSLI--PNLRNVVALDTEVASNRIYWSD---------LSQRMICSTQLDRAHGVSSYDTVISRD 75 (266)
T ss_dssp SEEEEETTS----CCCEEEE--CSCSSEEEEEEETTTTEEEEEE---------TTTTEEEEEEC--------CEEEECSS
T ss_pred eEEEEECCC----Ccceeee--CCCCceEEEEEEeCCCEEEEEE---------CCCCEEEEEEecCCCCCcceEEEEeCC
Confidence 344445543 5556553 3333566778999999998863 334678888876522 22222111
Q ss_pred CccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEE
Q 005240 82 DICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (706)
Q Consensus 82 ~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~ 161 (706)
. . .+..++..+-++.||++-. ....|.+
T Consensus 76 ~---~-~p~glAvD~~~~~lY~~d~------------------------------------------------~~~~I~v 103 (266)
T d1ijqa1 76 I---Q-APDGLAVDWIHSNIYWTDS------------------------------------------------VLGTVSV 103 (266)
T ss_dssp C---S-CCCEEEEETTTTEEEEEET------------------------------------------------TTTEEEE
T ss_pred C---C-CcceEEEeeccceEEEEec------------------------------------------------CCCEEEe
Confidence 0 1 1455677777888887621 1257889
Q ss_pred EccCC-Ccee-cCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccC
Q 005240 162 GSLDG-TAKD-FGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYN 238 (706)
Q Consensus 162 ~~l~g-~~~~-lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~ 238 (706)
++++| ..+. +... .....+++.|...+|+++.... ...|+..+++|...+.+......
T Consensus 104 ~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~-----------~~~I~r~~~dGs~~~~l~~~~~~-------- 164 (266)
T d1ijqa1 104 ADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT-----------PAKIKKGGLNGVDIYSLVTENIQ-------- 164 (266)
T ss_dssp EETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSS-----------SCEEEEEETTSCCEEEEECSSCS--------
T ss_pred EecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCC-----------CcceeEeccCCCceecccccccc--------
Confidence 99988 4333 3333 5678899999888888875432 24799999999888777543221
Q ss_pred ccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeeccccccc-ceecCCCceEEEEe
Q 005240 239 SVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRS-VSWCDDSLALVNET 317 (706)
Q Consensus 239 ~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~-~~wspDg~~l~~~~ 317 (706)
.+..+++.+.++. |||+... .+.|..++. +|...+.+......... ...+.++..|+++.
T Consensus 165 ----~p~gl~iD~~~~~-lYw~d~~-----------~~~I~~~~~---dG~~~~~~~~~~~~~~~p~~lav~~~~ly~td 225 (266)
T d1ijqa1 165 ----WPNGITLDLLSGR-LYWVDSK-----------LHSISSIDV---NGGNRKTILEDEKRLAHPFSLAVFEDKVFWTD 225 (266)
T ss_dssp ----CEEEEEEETTTTE-EEEEETT-----------TTEEEEEET---TSCSCEEEEECTTTTSSEEEEEEETTEEEEEE
T ss_pred ----eeeEEEeeccccE-EEEecCC-----------cCEEEEEEC---CCCCEEEEEeCCCcccccEEEEEECCEEEEEE
Confidence 1236788888887 9988321 235888888 66666666544333322 23445566788764
Q ss_pred eccccceEEEEEcCCCCC
Q 005240 318 WYKTSQTRTWLVCPGSKD 335 (706)
Q Consensus 318 ~~~~~~~~l~~~d~~~~~ 335 (706)
. ....|++++..+++
T Consensus 226 ~---~~~~I~~~~~~~g~ 240 (266)
T d1ijqa1 226 I---INEAIFSANRLTGS 240 (266)
T ss_dssp T---TTTEEEEEETTTCC
T ss_pred C---CCCeEEEEECCCCc
Confidence 2 33579999988753
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.12 E-value=0.0008 Score=63.61 Aligned_cols=227 Identities=11% Similarity=0.073 Sum_probs=130.3
Q ss_pred ceEEEEccCC-Cceec------CCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCC
Q 005240 157 AQLVLGSLDG-TAKDF------GTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLP 228 (706)
Q Consensus 157 ~~l~~~~l~g-~~~~l------t~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 228 (706)
..|..+++++ ....+ ..+ ..+..+++.+..++|+++... ...|+..+++++..+.+....
T Consensus 10 ~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~------------~~~I~~~~l~g~~~~~v~~~~ 77 (263)
T d1npea_ 10 GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDIS------------EPSIGRASLHGGEPTTIIRQD 77 (263)
T ss_dssp EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETT------------TTEEEEEESSSCCCEEEECTT
T ss_pred CeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECC------------CCeEEEEEcccCCcEEEEEec
Confidence 6788888876 32222 111 234567888888999876544 247999999987766665332
Q ss_pred CCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeec-ccccccceec
Q 005240 229 PAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL-DLRFRSVSWC 307 (706)
Q Consensus 229 ~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~-~~~~~~~~ws 307 (706)
.. .+..++...-++. |||.... ...|.++++ ++...+.|... -.....++..
T Consensus 78 ~~------------~p~~iAvD~~~~~-lY~~d~~-----------~~~I~~~~~---dg~~~~~l~~~~l~~p~~l~vd 130 (263)
T d1npea_ 78 LG------------SPEGIALDHLGRT-IFWTDSQ-----------LDRIEVAKM---DGTQRRVLFDTGLVNPRGIVTD 130 (263)
T ss_dssp CC------------CEEEEEEETTTTE-EEEEETT-----------TTEEEEEET---TSCSCEEEECSSCSSEEEEEEE
T ss_pred cc------------cccEEEEeccCCe-EEEeccC-----------CCEEEEEec---CCceEEEEecccccCCcEEEEe
Confidence 11 1234455444555 8877321 124777777 55555555433 3455677788
Q ss_pred CCCceEEEEeeccccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEeeeccCCcceEEEEecCC
Q 005240 308 DDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRG 387 (706)
Q Consensus 308 pDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~g 387 (706)
|....|++..... ....|+++++++. ....+....+.. | ..++..+.++.|++...
T Consensus 131 p~~g~ly~t~~~~-~~~~I~r~~~dG~--~~~~i~~~~~~~----P--~glaiD~~~~~lYw~d~--------------- 186 (263)
T d1npea_ 131 PVRGNLYWTDWNR-DNPKIETSHMDGT--NRRILAQDNLGL----P--NGLTFDAFSSQLCWVDA--------------- 186 (263)
T ss_dssp TTTTEEEEEECCS-SSCEEEEEETTSC--CCEEEECTTCSC----E--EEEEEETTTTEEEEEET---------------
T ss_pred cccCcEEEeecCC-CCcEEEEecCCCC--Cceeeeeecccc----c--ceEEEeecCcEEEEEeC---------------
Confidence 8888888765332 3457999999984 334443222211 1 12555677777777642
Q ss_pred CCCCCCCCceeeeecCCCceeeeecccchhhhhhhhhhccCCCceecccCCCEEEEEEecCCCCcEEEEEECCCCceeEe
Q 005240 388 FTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQI 467 (706)
Q Consensus 388 ~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~Dg~~l~~~~~~~~~p~~v~~~~~~~~~~~~l 467 (706)
....+.+++++++..+.+...- .....++.++.+|+++-.. ...|++++..+++..++
T Consensus 187 -----~~~~I~~~~~~g~~~~~v~~~~--------------~~P~~lav~~~~lYwtd~~---~~~I~~~~~~~g~~~~~ 244 (263)
T d1npea_ 187 -----GTHRAECLNPAQPGRRKVLEGL--------------QYPFAVTSYGKNLYYTDWK---TNSVIAMDLAISKEMDT 244 (263)
T ss_dssp -----TTTEEEEEETTEEEEEEEEECC--------------CSEEEEEEETTEEEEEETT---TTEEEEEETTTTEEEEE
T ss_pred -----CCCEEEEEECCCCCeEEEECCC--------------CCcEEEEEECCEEEEEECC---CCEEEEEECCCCccceE
Confidence 1224667777654444443221 0123445556676665432 34688888777765544
Q ss_pred e
Q 005240 468 T 468 (706)
Q Consensus 468 t 468 (706)
.
T Consensus 245 ~ 245 (263)
T d1npea_ 245 F 245 (263)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.11 E-value=0.00036 Score=67.45 Aligned_cols=195 Identities=12% Similarity=0.090 Sum_probs=115.1
Q ss_pred cceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEecCCCCCCC
Q 005240 34 NFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPP 113 (706)
Q Consensus 34 ~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~ 113 (706)
-.|.|.++...|+|+- -....|+.+++++++.+.+. .+.. +..+.+.+||..++.. .
T Consensus 21 Egp~wd~~~~~l~wvD---------i~~~~I~r~d~~~g~~~~~~-~~~~-----~~~i~~~~dg~l~va~-~------- 77 (295)
T d2ghsa1 21 EGPTFDPASGTAWWFN---------ILERELHELHLASGRKTVHA-LPFM-----GSALAKISDSKQLIAS-D------- 77 (295)
T ss_dssp EEEEEETTTTEEEEEE---------GGGTEEEEEETTTTEEEEEE-CSSC-----EEEEEEEETTEEEEEE-T-------
T ss_pred eCCeEECCCCEEEEEE---------CCCCEEEEEECCCCeEEEEE-CCCC-----cEEEEEecCCCEEEEE-e-------
Confidence 3699999999998874 23478999999999876543 2332 5678888999865532 1
Q ss_pred CCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCCceecCCC------ceEeeeeeCCCC
Q 005240 114 KKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP------AVYTAVEPSPDQ 186 (706)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~~~~lt~~------~~~~~~~~SpDG 186 (706)
..|+++|. +|+.+.+... .....+.+.|+|
T Consensus 78 -------------------------------------------~gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G 114 (295)
T d2ghsa1 78 -------------------------------------------DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSG 114 (295)
T ss_dssp -------------------------------------------TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTS
T ss_pred -------------------------------------------CccEEeecccceeeEEeeeecCCCcccceeeEECCCC
Confidence 46888888 5666665432 346678899999
Q ss_pred cEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEeccCC
Q 005240 187 KYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRG 266 (706)
Q Consensus 187 ~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~ 266 (706)
+ |+++....... .....++.+..++.+.+...-. ....+.|++|++. ++++..
T Consensus 115 ~-iw~~~~~~~~~--------~~~g~l~~~~~g~~~~~~~~~~-------------~~Ng~~~s~d~~~-l~~~dt---- 167 (295)
T d2ghsa1 115 A-LWIGTMGRKAE--------TGAGSIYHVAKGKVTKLFADIS-------------IPNSICFSPDGTT-GYFVDT---- 167 (295)
T ss_dssp C-EEEEEEETTCC--------TTCEEEEEEETTEEEEEEEEES-------------SEEEEEECTTSCE-EEEEET----
T ss_pred C-EEEEecccccc--------ccceeEeeecCCcEEEEeeccC-------------CcceeeecCCCce-EEEeec----
Confidence 6 55665443211 1233445555555555543211 0126799999997 776631
Q ss_pred CCccccCccceeeeecCCCCCCC----CceEEee---cccccccceecCCCceEEEEeeccccceEEEEEcCCC
Q 005240 267 DANVEVSPRDIIYTQPAEPAEGE----KPEILHK---LDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (706)
Q Consensus 267 ~~~~~~~~~~~l~~~d~~~~~~~----~~~~l~~---~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~ 333 (706)
....|+.++.++ +.+ +...... ..+....+....+|...+. .. ....|+++|.++
T Consensus 168 -------~~~~I~~~~~d~-~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva-~~---~~g~V~~~dp~G 229 (295)
T d2ghsa1 168 -------KVNRLMRVPLDA-RTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNA-RW---GEGAVDRYDTDG 229 (295)
T ss_dssp -------TTCEEEEEEBCT-TTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEE-EE---TTTEEEEECTTC
T ss_pred -------ccceeeEeeecc-cccccccceEEEeccCcccccccceEEcCCCCEEee-ee---CCCceEEecCCC
Confidence 122466666531 221 2222222 2333455667777763332 21 234699999876
|
| >d1ispa_ c.69.1.18 (A:) Lipase A {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Bacterial lipase domain: Lipase A species: Bacillus subtilis [TaxId: 1423]
Probab=98.10 E-value=2.4e-06 Score=76.66 Aligned_cols=83 Identities=11% Similarity=0.063 Sum_probs=54.6
Q ss_pred hHHHHHHHCCeEEEEcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhC--
Q 005240 546 TSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHA-- 623 (706)
Q Consensus 546 ~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~-- 623 (706)
..+..|.++||.|+..+.+ +++...... ....+++...++.+.++ ...+++.++||||||.++.+++.++
T Consensus 20 ~l~~~l~~~g~~~~~~~~~---~~~~~~~~~---~~~~~~l~~~i~~~~~~--~~~~~v~lvGHSmGG~va~~~~~~~~~ 91 (179)
T d1ispa_ 20 GIKSYLVSQGWSRDKLYAV---DFWDKTGTN---YNNGPVLSRFVQKVLDE--TGAKKVDIVAHSMGGANTLYYIKNLDG 91 (179)
T ss_dssp HHHHHHHHTTCCGGGEEEC---CCSCTTCCH---HHHHHHHHHHHHHHHHH--HCCSCEEEEEETHHHHHHHHHHHHSSG
T ss_pred HHHHHHHHcCCeEEEEecC---Ccccccccc---chhhhhHHHHHHHHHHh--cCCceEEEEeecCcCHHHHHHHHHcCC
Confidence 4567788999977543222 233332222 12233444455555544 2346899999999999999999876
Q ss_pred CCceeEEEeccCC
Q 005240 624 PHLFCCGIARSGS 636 (706)
Q Consensus 624 p~~~~a~v~~~~~ 636 (706)
|++++.+|+.++.
T Consensus 92 ~~~V~~~V~l~~p 104 (179)
T d1ispa_ 92 GNKVANVVTLGGA 104 (179)
T ss_dssp GGTEEEEEEESCC
T ss_pred chhhCEEEEECCC
Confidence 5789999998865
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.07 E-value=9.1e-05 Score=71.16 Aligned_cols=123 Identities=17% Similarity=0.178 Sum_probs=67.2
Q ss_pred ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCC
Q 005240 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (706)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~ 254 (706)
..+..++|||||++|+..... ..|.+|++.......... ... . ..+..++|+|++.
T Consensus 163 ~~v~~~~~s~~~~~l~~g~~d-------------g~i~i~d~~~~~~~~~~~-~~h-~---------~~v~~~~~~p~~~ 218 (287)
T d1pgua2 163 AKPSYISISPSETYIAAGDVM-------------GKILLYDLQSREVKTSRW-AFR-T---------SKINAISWKPAEK 218 (287)
T ss_dssp SCEEEEEECTTSSEEEEEETT-------------SCEEEEETTTTEEEECCS-CCC-S---------SCEEEEEECCCC-
T ss_pred CceeEEEeccCcccccccccc-------------ccccceeecccccccccc-ccc-c---------cccceeeeccccc
Confidence 567899999999999866544 379999998765432111 110 0 1133678888775
Q ss_pred ceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceE-EeecccccccceecCCCceEEEEeeccccceEEEEE
Q 005240 255 STLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEI-LHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLV 329 (706)
Q Consensus 255 ~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~-l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~ 329 (706)
. ..... ..............|++||++ ..++... +..+...+..+.|+||++ |+..+ . ++..+||.+
T Consensus 219 ~-~~~~~--~~~~~l~sgs~D~~i~iw~~~--~~~~~~~~~~~h~~~V~~v~~~~~~~-l~s~g-~-D~~v~iW~i 286 (287)
T d1pgua2 219 G-ANEEE--IEEDLVATGSLDTNIFIYSVK--RPMKIIKALNAHKDGVNNLLWETPST-LVSSG-A-DACIKRWNV 286 (287)
T ss_dssp ------C--CSCCEEEEEETTSCEEEEESS--CTTCCEEETTSSTTCEEEEEEEETTE-EEEEE-T-TSCEEEEEE
T ss_pred c-ccccc--CCCCeeEeecCCCeEEEEECC--CCCeEEEEeCCCCCCeEEEEECCCCE-EEEEE-C-CCeEEEEEE
Confidence 3 11110 000000000112358888873 2233333 334577889999999985 55443 2 356677754
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.00 E-value=5e-05 Score=77.15 Aligned_cols=145 Identities=16% Similarity=0.031 Sum_probs=82.7
Q ss_pred cccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCC--ccccccccceEEecCCcEEEEEecCCC
Q 005240 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD--ICLNAVFGSFVWVNNSTLLIFTIPSSR 109 (706)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~--~~~~~~~~~~~wSpDg~~l~~~~~~~~ 109 (706)
.+..+.||||| .||-. .....|.++|+.+++......... ......+..++|||||++|+..+.+..
T Consensus 186 ~~~~v~~s~dg-~lasg----------s~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t 254 (393)
T d1sq9a_ 186 FATSVDISERG-LIATG----------FNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNS 254 (393)
T ss_dssp CCCEEEECTTS-EEEEE----------CTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETT
T ss_pred cEEEEEECCCC-EEEEE----------eCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCC
Confidence 45678999998 55432 223567788988776533211110 000123778999999999887753211
Q ss_pred CCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CCC-ceec-------------CCC
Q 005240 110 RDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDF-------------GTP 174 (706)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g~-~~~l-------------t~~ 174 (706)
...+.++|+ +|+ ...| ...
T Consensus 255 ----------------------------------------------~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH 288 (393)
T d1sq9a_ 255 ----------------------------------------------FGCITLYETEFGERIGSLSVPTHSSQASLGEFAH 288 (393)
T ss_dssp ----------------------------------------------EEEEEEEETTTCCEEEEECBC--------CCBSB
T ss_pred ----------------------------------------------cceeeecccccceeeeeeccccccccceeeeecc
Confidence 023444454 331 1111 112
Q ss_pred -ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeE-EcccCCCCCCCCcccCccCCCCcceeeecC
Q 005240 175 -AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR-ELCDLPPAEDIPVCYNSVREGMRSISWRAD 252 (706)
Q Consensus 175 -~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~~~~~p~~~~~~~~g~~~~~~spd 252 (706)
..+..++|||||++|+-.+.+ ..|.+||+++++.. .+..+...-. .....+.|+|+
T Consensus 289 ~~~V~~l~fspd~~~l~S~s~D-------------~~v~vWd~~~g~~~~~l~gH~~~v~---------~~~~~~~~~~~ 346 (393)
T d1sq9a_ 289 SSWVMSLSFNDSGETLCSAGWD-------------GKLRFWDVKTKERITTLNMHCDDIE---------IEEDILAVDEH 346 (393)
T ss_dssp SSCEEEEEECSSSSEEEEEETT-------------SEEEEEETTTTEEEEEEECCGGGCS---------SGGGCCCBCTT
T ss_pred cCceeeeccCCCCCeeEEECCC-------------CEEEEEECCCCCEEEEECCcCCccc---------CCccEEEECCC
Confidence 568899999999998755433 48999999966543 4432221100 11124578888
Q ss_pred CCc
Q 005240 253 KPS 255 (706)
Q Consensus 253 g~~ 255 (706)
+..
T Consensus 347 ~~~ 349 (393)
T d1sq9a_ 347 GDS 349 (393)
T ss_dssp SCB
T ss_pred CCE
Confidence 875
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.98 E-value=0.0012 Score=63.90 Aligned_cols=75 Identities=8% Similarity=-0.016 Sum_probs=49.6
Q ss_pred cccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEcc-CC
Q 005240 88 VFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG 166 (706)
Q Consensus 88 ~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l-~g 166 (706)
.+..++|||||++|+..+.+ +.|.++++ .+
T Consensus 13 ~I~~l~fsp~~~~L~s~s~D-------------------------------------------------g~v~iwd~~~~ 43 (342)
T d1yfqa_ 13 YISDIKIIPSKSLLLITSWD-------------------------------------------------GSLTVYKFDIQ 43 (342)
T ss_dssp CEEEEEEEGGGTEEEEEETT-------------------------------------------------SEEEEEEEETT
T ss_pred CEEEEEEeCCCCEEEEEECC-------------------------------------------------CeEEEEEccCC
Confidence 48899999999998876531 45666666 22
Q ss_pred -Cceec---CCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEE
Q 005240 167 -TAKDF---GTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRE 223 (706)
Q Consensus 167 -~~~~l---t~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 223 (706)
....+ ... ..+..++|+|++..++++.... ..+.+|++.......
T Consensus 44 ~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d------------~~v~~w~~~~~~~~~ 93 (342)
T d1yfqa_ 44 AKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQ------------GEILKVDLIGSPSFQ 93 (342)
T ss_dssp TTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETT------------SCEEEECSSSSSSEE
T ss_pred CcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccc------------cceeeeecccccccc
Confidence 22222 122 6788999999877666665442 378999988554433
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.89 E-value=0.0007 Score=65.73 Aligned_cols=135 Identities=7% Similarity=0.042 Sum_probs=74.1
Q ss_pred ceEEEEcc-CCCc-eecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCC
Q 005240 157 AQLVLGSL-DGTA-KDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDI 233 (706)
Q Consensus 157 ~~l~~~~l-~g~~-~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~ 233 (706)
+.|.++++ .++. ..+... ..+..+ ++++++|+..+.. ..|.+|++...+............
T Consensus 197 g~i~~~d~~~~~~~~~~~~~~~~v~~~--~~~~~~l~s~s~d-------------~~i~iwd~~~~~~~~~~~~~~~~~- 260 (342)
T d2ovrb2 197 TSIRVWDVETGNCIHTLTGHQSLTSGM--ELKDNILVSGNAD-------------STVKIWDIKTGQCLQTLQGPNKHQ- 260 (342)
T ss_dssp SCEEEEETTTCCEEEEECCCCSCEEEE--EEETTEEEEEETT-------------SCEEEEETTTCCEEEEECSTTSCS-
T ss_pred CeEEEeecccceeeeEecccccceeEE--ecCCCEEEEEcCC-------------CEEEEEecccccccccccccceee-
Confidence 46777787 4443 333333 344444 4556677654433 379999998655443322211110
Q ss_pred CcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCc-eEEee-----cccccccceec
Q 005240 234 PVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP-EILHK-----LDLRFRSVSWC 307 (706)
Q Consensus 234 p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~-~~l~~-----~~~~~~~~~ws 307 (706)
..-..++++++. ++ .... .+.|.+||+ .+++. +.+.. ....+..+.|+
T Consensus 261 ----------~~~~~~~~~~~~-~~-s~s~-----------Dg~i~iwd~---~tg~~i~~~~~~~~~~~~~~v~~v~~s 314 (342)
T d2ovrb2 261 ----------SAVTCLQFNKNF-VI-TSSD-----------DGTVKLWDL---KTGEFIRNLVTLESGGSGGVVWRIRAS 314 (342)
T ss_dssp ----------SCEEEEEECSSE-EE-EEET-----------TSEEEEEET---TTCCEEEEEEECTTGGGTCEEEEEEEC
T ss_pred ----------eceeecccCCCe-eE-EEcC-----------CCEEEEEEC---CCCCEEEEEecccCCCCCCCEEEEEEC
Confidence 112234455553 33 2211 125888998 55554 34432 23457889999
Q ss_pred CCCceEEEEeeccccceEEEEEcCCC
Q 005240 308 DDSLALVNETWYKTSQTRTWLVCPGS 333 (706)
Q Consensus 308 pDg~~l~~~~~~~~~~~~l~~~d~~~ 333 (706)
||+..|+..+.+.+...+|+++|.+.
T Consensus 315 ~~~~~la~g~~dGt~~~~l~~~Df~~ 340 (342)
T d2ovrb2 315 NTKLVCAVGSRNGTEETKLLVLDFDV 340 (342)
T ss_dssp SSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred CCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence 99988877654433456788887653
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.87 E-value=0.00057 Score=65.26 Aligned_cols=111 Identities=8% Similarity=-0.045 Sum_probs=60.2
Q ss_pred eEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCc
Q 005240 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPS 255 (706)
Q Consensus 176 ~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~ 255 (706)
.+..+.+++++..++.... ..+.+|+...++......... ....++++++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~ 132 (287)
T d1pgua2 82 QPKVASANNDGFTAVLTND--------------DDLLILQSFTGDIIKSVRLNS---------------PGSAVSLSQNY 132 (287)
T ss_dssp CEEEEEECSSSEEEEEETT--------------SEEEEEETTTCCEEEEEECSS---------------CEEEEEECSSE
T ss_pred ceeeeeeccCCceEEEeec--------------ccceeeeccceeeeeeccccc---------------eeeeeeccCcc
Confidence 3446678889877765432 256777777554333222211 13367788775
Q ss_pred eEEEEEeccCCCCccccCccceeeeecCCCCCCCCce-EEe-ecccccccceecCCCceEEEEeeccccceEEEEEcCCC
Q 005240 256 TLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPE-ILH-KLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (706)
Q Consensus 256 ~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~-~l~-~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~ 333 (706)
++... .++ ..+.++++ ...+.. .+. .....+..+.|+||+++|+..... + .|.++|+.+
T Consensus 133 -~~v~~-~~~----------~~v~~~~~---~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d--g--~i~i~d~~~ 193 (287)
T d1pgua2 133 -VAVGL-EEG----------NTIQVFKL---SDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVM--G--KILLYDLQS 193 (287)
T ss_dssp -EEEEE-TTT----------SCEEEEET---TEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETT--S--CEEEEETTT
T ss_pred -eeeec-ccc----------ceeeeeec---cccceeeeeeeccCCceeEEEeccCcccccccccc--c--cccceeecc
Confidence 44332 111 12555555 221111 111 234567789999999988876522 2 366677766
Q ss_pred C
Q 005240 334 K 334 (706)
Q Consensus 334 ~ 334 (706)
+
T Consensus 194 ~ 194 (287)
T d1pgua2 194 R 194 (287)
T ss_dssp T
T ss_pred c
Confidence 3
|
| >d2dsta1 c.69.1.39 (A:2-123) Hypothetical protein TTHA1544 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: TTHA1544-like domain: Hypothetical protein TTHA1544 species: Thermus thermophilus [TaxId: 274]
Probab=97.80 E-value=4.7e-05 Score=62.42 Aligned_cols=64 Identities=16% Similarity=-0.006 Sum_probs=45.3
Q ss_pred HCCeEEEEcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCC
Q 005240 553 ARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPH 625 (706)
Q Consensus 553 ~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~ 625 (706)
+.+|.|+.++-+ |+|.+.......+...+|+.+.++.+ +-++..|+|+||||.+++.+++..+.
T Consensus 39 ~~~yrvi~~Dlp---G~G~S~~p~~s~~~~a~~i~~ll~~L------~i~~~~viG~S~Gg~ia~~laa~~~~ 102 (122)
T d2dsta1 39 PEGYAFYLLDLP---GYGRTEGPRMAPEELAHFVAGFAVMM------NLGAPWVLLRGLGLALGPHLEALGLR 102 (122)
T ss_dssp CTTSEEEEECCT---TSTTCCCCCCCHHHHHHHHHHHHHHT------TCCSCEEEECGGGGGGHHHHHHTTCC
T ss_pred cCCeEEEEEecc---ccCCCCCcccccchhHHHHHHHHHHh------CCCCcEEEEeCccHHHHHHHHhhccc
Confidence 579999996655 66666544334455566665554444 34688999999999999999997753
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.78 E-value=0.0098 Score=55.65 Aligned_cols=115 Identities=9% Similarity=0.014 Sum_probs=64.2
Q ss_pred ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCC
Q 005240 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (706)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~ 254 (706)
.....+++.++|+ |++.... ...+.+++..+........... ..+..++..++|+
T Consensus 98 ~~p~~iavd~~g~-i~v~d~~------------~~~~~~~~~~~~~~~~~~~~~~------------~~p~~i~~~~~g~ 152 (260)
T d1rwia_ 98 NYPEGLAVDTQGA-VYVADRG------------NNRVVKLAAGSKTQTVLPFTGL------------NDPDGVAVDNSGN 152 (260)
T ss_dssp CSEEEEEECTTCC-EEEEEGG------------GTEEEEECTTCSSCEECCCCSC------------CSCCEEEECTTCC
T ss_pred eecccccccccce-eEeeccc------------cccccccccccceeeeeeeccc------------CCcceeeecCCCC
Confidence 4567889999997 4444322 2367777776654433322111 1234678888886
Q ss_pred ceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEe-ecccccccceecCCCceEEEEeeccccceEEEEEcCCC
Q 005240 255 STLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH-KLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (706)
Q Consensus 255 ~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~-~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~ 333 (706)
|++.. . ....|+.++. ++.....+. ..-.....+++.++|. |+++. . ...+|++++.++
T Consensus 153 --~~v~~-~----------~~~~i~~~d~---~~~~~~~~~~~~~~~p~gi~~d~~g~-l~vsd-~--~~~~i~~~~~~~ 212 (260)
T d1rwia_ 153 --VYVTD-T----------DNNRVVKLEA---ESNNQVVLPFTDITAPWGIAVDEAGT-VYVTE-H--NTNQVVKLLAGS 212 (260)
T ss_dssp --EEEEE-G----------GGTEEEEECT---TTCCEEECCCSSCCSEEEEEECTTCC-EEEEE-T--TTTEEEEECTTC
T ss_pred --Eeeec-c----------cccccccccc---ccceeeeeeccccCCCccceeeeeee-eeeee-c--CCCEEEEEeCCC
Confidence 65442 1 1224777776 444333332 2223445678888886 44332 2 345688898776
Q ss_pred C
Q 005240 334 K 334 (706)
Q Consensus 334 ~ 334 (706)
.
T Consensus 213 ~ 213 (260)
T d1rwia_ 213 T 213 (260)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >d1jmkc_ c.69.1.22 (C:) Surfactin synthetase, SrfA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterase domain of polypeptide, polyketide and fatty acid synthases domain: Surfactin synthetase, SrfA species: Bacillus subtilis [TaxId: 1423]
Probab=97.77 E-value=1.3e-05 Score=74.59 Aligned_cols=79 Identities=13% Similarity=0.013 Sum_probs=47.8
Q ss_pred ceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHHCCeEEEEcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHH
Q 005240 513 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEE 592 (706)
Q Consensus 513 ~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~ 592 (706)
-|+||++||.+-. ...| ..++..| .+|.|...+.. |.+. .++++.+.++.
T Consensus 17 ~~~l~~lhg~~g~-----------~~~~----~~la~~L--~~~~v~~~~~~---g~~~----------~a~~~~~~i~~ 66 (230)
T d1jmkc_ 17 EQIIFAFPPVLGY-----------GLMY----QNLSSRL--PSYKLCAFDFI---EEED----------RLDRYADLIQK 66 (230)
T ss_dssp SEEEEEECCTTCC-----------GGGG----HHHHHHC--TTEEEEEECCC---CSTT----------HHHHHHHHHHH
T ss_pred CCeEEEEcCCCCC-----------HHHH----HHHHHHC--CCCEEeccCcC---CHHH----------HHHHHHHHHHH
Confidence 4789999996311 1111 2334444 47888875543 3321 23444444433
Q ss_pred HHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCc
Q 005240 593 VVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHL 626 (706)
Q Consensus 593 l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~ 626 (706)
+ ....++.++||||||.+|+.++.+.|++
T Consensus 67 ~-----~~~~~~~lvGhS~GG~vA~~~A~~~~~~ 95 (230)
T d1jmkc_ 67 L-----QPEGPLTLFGYSAGCSLAFEAAKKLEGQ 95 (230)
T ss_dssp H-----CCSSCEEEEEETHHHHHHHHHHHHHHHT
T ss_pred h-----CCCCcEEEEeeccChHHHHHHHHhhhhh
Confidence 2 1236799999999999999999876544
|
| >d2b61a1 c.69.1.40 (A:2-358) Homoserine O-acetyltransferase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: O-acetyltransferase domain: Homoserine O-acetyltransferase species: Haemophilus influenzae [TaxId: 727]
Probab=97.76 E-value=5.1e-05 Score=74.98 Aligned_cols=80 Identities=15% Similarity=0.232 Sum_probs=54.1
Q ss_pred CCeEEEEcCCCCcCCCCCCCCc-----------hhhHHHHHHHHHHHHHHHHHcCCCCCCcE-EEEEechHHHHHHHHHH
Q 005240 554 RRFAVLAGPSIPIIGEGDKLPN-----------DRFVEQLVSSAEAAVEEVVRRGVADPSRI-AVGGHSYGAFMTAHLLA 621 (706)
Q Consensus 554 ~G~~v~~~~~~~~~g~g~~~~~-----------~~~~~~~~~D~~~~~~~l~~~~~id~~~i-~i~G~S~GG~~a~~~~~ 621 (706)
.-|-|+++|..|+ ++|.+... ..+-.--+.|+..+-.-|++. ..-+|+ +|+|+||||+.|+..+.
T Consensus 77 ~kyfVI~~n~lG~-~~gSs~p~s~~p~tg~~~g~~FP~iti~D~v~aq~~Ll~~--LGI~~l~~viG~SmGGmqAl~wa~ 153 (357)
T d2b61a1 77 DRYFFISSNVLGG-CKGTTGPSSINPQTGKPYGSQFPNIVVQDIVKVQKALLEH--LGISHLKAIIGGSFGGMQANQWAI 153 (357)
T ss_dssp TTCEEEEECCTTC-SSSSSCTTSBCTTTSSBCGGGCCCCCHHHHHHHHHHHHHH--TTCCCEEEEEEETHHHHHHHHHHH
T ss_pred CceEEEEecccCC-ccccCCcCCCCCCCCCCCCcccccchhHHHHHHHHHHHHH--hCcceEEEEecccHHHHHHHHHHH
Confidence 4477888777764 22221110 111112256777776666654 223567 88899999999999999
Q ss_pred hCCCceeEEEeccCC
Q 005240 622 HAPHLFCCGIARSGS 636 (706)
Q Consensus 622 ~~p~~~~a~v~~~~~ 636 (706)
++|++++.+|++++.
T Consensus 154 ~~Pd~v~~~i~i~~~ 168 (357)
T d2b61a1 154 DYPDFMDNIVNLCSS 168 (357)
T ss_dssp HSTTSEEEEEEESCC
T ss_pred hhhHHHhhhcccccc
Confidence 999999999998865
|
| >d1xkta_ c.69.1.22 (A:) Fatty acid synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterase domain of polypeptide, polyketide and fatty acid synthases domain: Fatty acid synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.44 E-value=0.00019 Score=68.19 Aligned_cols=69 Identities=12% Similarity=0.065 Sum_probs=42.0
Q ss_pred CCeEEEEcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEec
Q 005240 554 RRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIAR 633 (706)
Q Consensus 554 ~G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~ 633 (706)
.++.|+..+.. |+|... ..+..+.|...++..+ .+..++.++||||||.+|+.++.+.|++++.++..
T Consensus 48 L~~~v~~~d~~---g~~~~~----~~~~~a~~~~~~~~~~-----~~~~~~~lvGhS~Gg~vA~~~A~~~p~~~~~v~~l 115 (286)
T d1xkta_ 48 LSIPTYGLQCT---RAAPLD----SIHSLAAYYIDCIRQV-----QPEGPYRVAGYSYGACVAFEMCSQLQAQQSPAPTH 115 (286)
T ss_dssp CSSCEEEECCC---TTSCCS----CHHHHHHHHHHHHHHH-----CCSSCCEEEEETHHHHHHHHHHHHHHHC------C
T ss_pred cCCeEEEEeCC---CCCCCC----CHHHHHHHHHHHHHHh-----cCCCceEEeecCCccHHHHHHHHHHHHcCCCceeE
Confidence 57777764443 444432 2344455544444332 23468999999999999999999999988776655
Q ss_pred c
Q 005240 634 S 634 (706)
Q Consensus 634 ~ 634 (706)
.
T Consensus 116 ~ 116 (286)
T d1xkta_ 116 N 116 (286)
T ss_dssp C
T ss_pred E
Confidence 4
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.43 E-value=0.015 Score=58.88 Aligned_cols=113 Identities=12% Similarity=0.138 Sum_probs=70.1
Q ss_pred ceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEeecc-----
Q 005240 246 SISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYK----- 320 (706)
Q Consensus 246 ~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~----- 320 (706)
.+.+|||++. |+|..+..+.+.. .|++.|+ ++++.....-.......+.|++|++.|+|.....
T Consensus 129 ~~~~Spd~~~-la~s~d~~G~e~~-------~l~v~Dl---~tg~~~~~~i~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~ 197 (430)
T d1qfma1 129 GYAFSEDGEY-FAYGLSASGSDWV-------TIKFMKV---DGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKS 197 (430)
T ss_dssp EEEECTTSSE-EEEEEEETTCSCE-------EEEEEET---TTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCC
T ss_pred ceEecCCCCE-EEEEeccccCchh-------eeEEecc---CcceecccccccccccceEEcCCCCEEEEEEeccccCcc
Confidence 5688999998 7777655554443 4889999 6766433221122346789999999999875321
Q ss_pred -------ccceEEEEEcCCCCCCCceeeecCcccccccCCCCCceEeccCCCEEEEeeec
Q 005240 321 -------TSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKK 373 (706)
Q Consensus 321 -------~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~ 373 (706)
....++|+..+.+...+...+++..-...+ ......++||+++++....
T Consensus 198 ~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~----~~~~~~s~d~~~l~i~~~~ 253 (430)
T d1qfma1 198 DGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKW----MGGAELSDDGRYVLLSIRE 253 (430)
T ss_dssp SSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTC----EEEEEECTTSCEEEEEEEC
T ss_pred cccccccCCcceEEEEECCCCccccccccccccCCce----EEeeeccCCcceeeEEeec
Confidence 134478888887765455555543211100 0123468999998876644
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.39 E-value=0.02 Score=53.46 Aligned_cols=132 Identities=12% Similarity=-0.005 Sum_probs=73.2
Q ss_pred ceEEEEccCC-CceecC-CC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCC
Q 005240 157 AQLVLGSLDG-TAKDFG-TP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDI 233 (706)
Q Consensus 157 ~~l~~~~l~g-~~~~lt-~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~ 233 (706)
..++.++..+ ...... .. .....++++|+|+ |++.... ...|..++.++.....+.....
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-~~v~~~~------------~~~i~~~d~~~~~~~~~~~~~~---- 181 (260)
T d1rwia_ 119 NRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGN-VYVTDTD------------NNRVVKLEAESNNQVVLPFTDI---- 181 (260)
T ss_dssp TEEEEECTTCSSCEECCCCSCCSCCEEEECTTCC-EEEEEGG------------GTEEEEECTTTCCEEECCCSSC----
T ss_pred ccccccccccceeeeeeecccCCcceeeecCCCC-Eeeeccc------------cccccccccccceeeeeecccc----
Confidence 4677777755 222222 11 4556888999997 5444332 2478999988776555432221
Q ss_pred CcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeec-ccccccceecCCCce
Q 005240 234 PVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL-DLRFRSVSWCDDSLA 312 (706)
Q Consensus 234 p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~-~~~~~~~~wspDg~~ 312 (706)
..+..+++.++|+ ||+.. .. ...|+.++. +++..+.+... -.....+++.+||.
T Consensus 182 --------~~p~gi~~d~~g~--l~vsd-~~----------~~~i~~~~~---~~~~~~~~~~~~~~~P~~i~~d~~g~- 236 (260)
T d1rwia_ 182 --------TAPWGIAVDEAGT--VYVTE-HN----------TNQVVKLLA---GSTTSTVLPFTGLNTPLAVAVDSDRT- 236 (260)
T ss_dssp --------CSEEEEEECTTCC--EEEEE-TT----------TTEEEEECT---TCSCCEECCCCSCCCEEEEEECTTCC-
T ss_pred --------CCCccceeeeeee--eeeee-cC----------CCEEEEEeC---CCCeEEEEccCCCCCeEEEEEeCCCC-
Confidence 1234678888886 66542 21 124666665 33333333222 23445677888886
Q ss_pred EEEEeeccccceEEEEEcCCC
Q 005240 313 LVNETWYKTSQTRTWLVCPGS 333 (706)
Q Consensus 313 l~~~~~~~~~~~~l~~~d~~~ 333 (706)
|+++. . ...+|++++..+
T Consensus 237 l~vad-~--~~~rI~~i~~~~ 254 (260)
T d1rwia_ 237 VYVAD-R--GNDRVVKLTSLE 254 (260)
T ss_dssp EEEEE-G--GGTEEEEECCCG
T ss_pred EEEEE-C--CCCEEEEEeCCC
Confidence 44432 2 245788887554
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.38 E-value=0.012 Score=54.93 Aligned_cols=53 Identities=17% Similarity=0.109 Sum_probs=33.8
Q ss_pred eeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEe
Q 005240 37 SWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTI 105 (706)
Q Consensus 37 ~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~ 105 (706)
.++|||++||..+. + ..|.++|+++++..+...+... .+. .+++|+++|+..+
T Consensus 20 c~~~d~~~l~sgs~--------D--g~i~vWd~~~~~~~~~l~~H~~----~V~--~v~~~~~~l~s~s 72 (293)
T d1p22a2 20 CLQYDDQKIVSGLR--------D--NTIKIWDKNTLECKRILTGHTG----SVL--CLQYDERVIITGS 72 (293)
T ss_dssp EEECCSSEEEEEES--------S--SCEEEEESSSCCEEEEECCCSS----CEE--EEECCSSEEEEEE
T ss_pred EEEEcCCEEEEEeC--------C--CeEEEEECCCCcEEEEEecCCC----CEe--eeecccceeeccc
Confidence 47899999987653 3 4566678888877665433221 144 4456888877654
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=97.10 E-value=0.076 Score=49.78 Aligned_cols=133 Identities=8% Similarity=0.091 Sum_probs=72.0
Q ss_pred ceEEEEccCCCc-eecCCC--ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCC
Q 005240 157 AQLVLGSLDGTA-KDFGTP--AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDI 233 (706)
Q Consensus 157 ~~l~~~~l~g~~-~~lt~~--~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~ 233 (706)
..|..++.+|+. +.+... .....++..++|+.++. ... ...+.+++.+++.++.+......
T Consensus 93 ~~i~~~~~~g~~~~~~~~~~~~~p~~~avd~~G~i~v~-~~~------------~~~~~~~~~~g~~~~~~g~~~~~--- 156 (279)
T d1q7fa_ 93 HQIQIYNQYGQFVRKFGATILQHPRGVTVDNKGRIIVV-ECK------------VMRVIIFDQNGNVLHKFGCSKHL--- 156 (279)
T ss_dssp CEEEEECTTSCEEEEECTTTCSCEEEEEECTTSCEEEE-ETT------------TTEEEEECTTSCEEEEEECTTTC---
T ss_pred cccccccccccceeecCCCcccccceeccccCCcEEEE-eec------------cceeeEeccCCceeecccccccc---
Confidence 467777777743 333222 45678888999975543 222 24788888888766654322111
Q ss_pred CcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCceEEeeccc---ccccceecCCC
Q 005240 234 PVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDL---RFRSVSWCDDS 310 (706)
Q Consensus 234 p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~---~~~~~~wspDg 310 (706)
.....+...++|. |++.... ...|++++. ++.....+ ...+ ....++..++|
T Consensus 157 --------~~~~~i~~d~~g~--i~v~d~~-----------~~~V~~~d~---~G~~~~~~-g~~g~~~~P~giavD~~G 211 (279)
T d1q7fa_ 157 --------EFPNGVVVNDKQE--IFISDNR-----------AHCVKVFNY---EGQYLRQI-GGEGITNYPIGVGINSNG 211 (279)
T ss_dssp --------SSEEEEEECSSSE--EEEEEGG-----------GTEEEEEET---TCCEEEEE-SCTTTSCSEEEEEECTTC
T ss_pred --------cccceeeecccee--EEeeecc-----------ccceeeeec---CCceeeee-cccccccCCcccccccCC
Confidence 1123556667764 6544221 124777776 44333333 2222 23455788899
Q ss_pred ceEEEEeeccccceEEEEEcCCC
Q 005240 311 LALVNETWYKTSQTRTWLVCPGS 333 (706)
Q Consensus 311 ~~l~~~~~~~~~~~~l~~~d~~~ 333 (706)
. |+++. .. ...+|.+++.++
T Consensus 212 ~-i~Vad-~~-~~~~v~~f~~~G 231 (279)
T d1q7fa_ 212 E-ILIAD-NH-NNFNLTIFTQDG 231 (279)
T ss_dssp C-EEEEE-CS-SSCEEEEECTTS
T ss_pred e-EEEEE-CC-CCcEEEEECCCC
Confidence 7 44432 21 234577888665
|
| >d2vata1 c.69.1.40 (A:7-382) Acetyl-CoA:deacetylcephalosporin C acetyltransferase CefG {Acremonium chrysogenum [TaxId: 5044]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: O-acetyltransferase domain: Acetyl-CoA:deacetylcephalosporin C acetyltransferase CefG species: Acremonium chrysogenum [TaxId: 5044]
Probab=97.10 E-value=0.00083 Score=66.52 Aligned_cols=53 Identities=21% Similarity=0.183 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHcCCCCCCcE-EEEEechHHHHHHHHHHhCCCceeEEEeccCCC
Q 005240 583 VSSAEAAVEEVVRRGVADPSRI-AVGGHSYGAFMTAHLLAHAPHLFCCGIARSGSY 637 (706)
Q Consensus 583 ~~D~~~~~~~l~~~~~id~~~i-~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~~ 637 (706)
+.|+..+-.-|++. +.-+|+ +|+|+||||+.|+..+.++|++++.+|.+++..
T Consensus 117 i~D~v~aq~~ll~~--LGI~~l~aViG~SmGGmqal~wa~~~Pd~v~~li~Ia~~~ 170 (376)
T d2vata1 117 IRDDVRIHRQVLDR--LGVRQIAAVVGASMGGMHTLEWAFFGPEYVRKIVPIATSC 170 (376)
T ss_dssp HHHHHHHHHHHHHH--HTCCCEEEEEEETHHHHHHHHHGGGCTTTBCCEEEESCCS
T ss_pred hHHHHHHHHHHHHH--hCcceEEEeecccHHHHHHHHHHHhchHHHhhhccccccc
Confidence 45666665545443 122565 899999999999999999999999999888754
|
| >d2h7xa1 c.69.1.22 (A:9-291) Picromycin polyketide synthase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterase domain of polypeptide, polyketide and fatty acid synthases domain: Picromycin polyketide synthase species: Streptomyces venezuelae [TaxId: 54571]
Probab=97.08 E-value=0.00076 Score=64.65 Aligned_cols=54 Identities=13% Similarity=0.076 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhC----CCceeEEEeccCC
Q 005240 578 FVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHA----PHLFCCGIARSGS 636 (706)
Q Consensus 578 ~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~----p~~~~a~v~~~~~ 636 (706)
..+..+.++..+|.-.. ...++.++||||||.+++.++.+. +..+.+++...+.
T Consensus 113 s~~~~a~~~~~~i~~~~-----~~~P~vL~GhS~GG~vA~e~A~~l~~~~g~~v~~LvL~d~~ 170 (283)
T d2h7xa1 113 DLDTALDAQARAILRAA-----GDAPVVLLGHSGGALLAHELAFRLERAHGAPPAGIVLVDPY 170 (283)
T ss_dssp SHHHHHHHHHHHHHHHH-----TTSCEEEEEETHHHHHHHHHHHHHHHHHSCCCSEEEEESCC
T ss_pred CHHHHHHHHHHHHHHhc-----CCCceEEEEeccchHHHHHHHHhhHHHcCCCceEEEEecCC
Confidence 34555555444433222 235799999999999999988753 4578888887654
|
| >d1ei9a_ c.69.1.13 (A:) Palmitoyl protein thioesterase 1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterases domain: Palmitoyl protein thioesterase 1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.02 E-value=0.00099 Score=62.68 Aligned_cols=36 Identities=17% Similarity=0.162 Sum_probs=30.8
Q ss_pred CCcEEEEEechHHHHHHHHHHhCCC-ceeEEEeccCC
Q 005240 601 PSRIAVGGHSYGAFMTAHLLAHAPH-LFCCGIARSGS 636 (706)
Q Consensus 601 ~~~i~i~G~S~GG~~a~~~~~~~p~-~~~a~v~~~~~ 636 (706)
.++|-++|||+||.++-.++.+.++ .++..|++++.
T Consensus 79 ~~~v~lVGhSqGGLiaR~~i~~~~~~~V~~lITLgsP 115 (279)
T d1ei9a_ 79 QQGYNAMGFSQGGQFLRAVAQRCPSPPMVNLISVGGQ 115 (279)
T ss_dssp TTCEEEEEETTHHHHHHHHHHHCCSSCEEEEEEESCC
T ss_pred ccceeEEEEccccHHHHHHHHHcCCCCcceEEEECCC
Confidence 3689999999999999999999875 47888888754
|
| >d2pl5a1 c.69.1.40 (A:5-366) Homoserine O-acetyltransferase {Leptospira interrogans [TaxId: 173]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: O-acetyltransferase domain: Homoserine O-acetyltransferase species: Leptospira interrogans [TaxId: 173]
Probab=96.95 E-value=0.0026 Score=62.52 Aligned_cols=53 Identities=15% Similarity=0.137 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCC
Q 005240 583 VSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 636 (706)
Q Consensus 583 ~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~ 636 (706)
+.|+.++-.-|.+.=-|. .--+|+|+||||+.|+.-+.++|++++.+|.+++.
T Consensus 123 ~~D~v~~~~~ll~~LGI~-~l~~viG~SmGGmqAl~wA~~yPd~v~~~v~ia~s 175 (362)
T d2pl5a1 123 IQDMVKAQKLLVESLGIE-KLFCVAGGSMGGMQALEWSIAYPNSLSNCIVMAST 175 (362)
T ss_dssp HHHHHHHHHHHHHHTTCS-SEEEEEEETHHHHHHHHHHHHSTTSEEEEEEESCC
T ss_pred hHHHHHHHHHHHHHhCcC-eeEEEeehhHHHHHHHHHHHhCchHhhhhcccccc
Confidence 667767666666542242 34458999999999999999999999999999965
|
| >d1rp1a2 c.69.1.19 (A:1-336) Pancreatic lipase, N-terminal domain {Dog (Canis familiaris) [TaxId: 9615]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Pancreatic lipase, N-terminal domain domain: Pancreatic lipase, N-terminal domain species: Dog (Canis familiaris) [TaxId: 9615]
Probab=96.93 E-value=0.00094 Score=64.51 Aligned_cols=81 Identities=10% Similarity=-0.006 Sum_probs=52.4
Q ss_pred HCCeEEEEcCCCCcCCCCCCCCc-hhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEE
Q 005240 553 ARRFAVLAGPSIPIIGEGDKLPN-DRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGI 631 (706)
Q Consensus 553 ~~G~~v~~~~~~~~~g~g~~~~~-~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v 631 (706)
...+.|+..+-.... ...+.. ......+-+.+...|++|.+..-+++++|-|+|||+||++|..+..+. ..+....
T Consensus 98 ~~d~NVI~VDW~~~a--~~~Y~~a~~n~~~Vg~~ia~~i~~l~~~~g~~~~~vhlIGhSLGAhvAG~aG~~~-~~l~rIt 174 (337)
T d1rp1a2 98 VEEVNCICVDWKKGS--QTSYTQAANNVRVVGAQVAQMLSMLSANYSYSPSQVQLIGHSLGAHVAGEAGSRT-PGLGRIT 174 (337)
T ss_dssp TCCEEEEEEECHHHH--SSCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCGGGEEEEEETHHHHHHHHHHHTS-TTCCEEE
T ss_pred cCCceEEEEeecccc--CcchHHHHHHHHHHHHHHHHHHHHHHHhcCCChhheEEEeecHHHhhhHHHHHhh-cccccee
Confidence 355888875553211 111000 111223456677788888776567899999999999999998777655 5666666
Q ss_pred eccCC
Q 005240 632 ARSGS 636 (706)
Q Consensus 632 ~~~~~ 636 (706)
..-|.
T Consensus 175 gLDPA 179 (337)
T d1rp1a2 175 GLDPV 179 (337)
T ss_dssp EESCC
T ss_pred ccCCC
Confidence 66654
|
| >d1bu8a2 c.69.1.19 (A:1-336) Pancreatic lipase, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Pancreatic lipase, N-terminal domain domain: Pancreatic lipase, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.50 E-value=0.0044 Score=59.58 Aligned_cols=109 Identities=8% Similarity=-0.081 Sum_probs=65.4
Q ss_pred ceEEEEEcCCCCCCcCcCCcccCCCCCcCCCCchHHHHHHH-CCeEEEEcCCCCcCCCCCCCCc-hhhHHHHHHHHHHHH
Q 005240 513 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA-RRFAVLAGPSIPIIGEGDKLPN-DRFVEQLVSSAEAAV 590 (706)
Q Consensus 513 ~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~G~~v~~~~~~~~~g~g~~~~~-~~~~~~~~~D~~~~~ 590 (706)
.|++|++||=. ++ ....+.......+.+ ..+.|+..+-..... ..+.. ......+-+.+...|
T Consensus 70 ~pt~iiiHG~~-----------~~--~~~~~~~~~~~a~l~~~d~NVi~VDW~~~a~--~~Y~~a~~n~~~Vg~~ia~~i 134 (338)
T d1bu8a2 70 RKTRFIVHGFI-----------DK--GEDGWLLDMCKKMFQVEKVNCICVDWRRGSR--TEYTQASYNTRVVGAEIAFLV 134 (338)
T ss_dssp SEEEEEECCSC-----------CT--TCTTHHHHHHHHHHTTCCEEEEEEECHHHHS--SCHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEeCccc-----------CC--CCcccHHHHHHHHHhcCCceEEEEechhhcc--cchHHHHHhHHHHHHHHHHHH
Confidence 49999999821 00 111111122333444 558887755532111 11000 111223445556677
Q ss_pred HHHHHcCCCCCCcEEEEEechHHHHHHHHHHhCCCceeEEEeccCC
Q 005240 591 EEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHAPHLFCCGIARSGS 636 (706)
Q Consensus 591 ~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~p~~~~a~v~~~~~ 636 (706)
++|....-+++++|-++|||.|+++|-.+.-+-+.++.......|.
T Consensus 135 ~~l~~~~g~~~~~vhlIGhSLGAhiaG~ag~~l~~kigrItgLDPA 180 (338)
T d1bu8a2 135 QVLSTEMGYSPENVHLIGHSLGAHVVGEAGRRLEGHVGRITGLDPA 180 (338)
T ss_dssp HHHHHHHCCCGGGEEEEEETHHHHHHHHHHHHTTTCSSEEEEESCB
T ss_pred HHHHHhcCCCcceeEEEeccHHHHHHHHHHHhhccccccccccccC
Confidence 7776665578999999999999999999998876777777766664
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=96.43 E-value=0.24 Score=42.82 Aligned_cols=139 Identities=9% Similarity=0.050 Sum_probs=85.4
Q ss_pred CCeeeeecCCCCCcccceeeCCCCCeEEEEeeccccccccCCceeEEEEEcC-CCceeecccCCCccccccccceEEecC
Q 005240 19 GPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAE-TGEAKPLFESPDICLNAVFGSFVWVNN 97 (706)
Q Consensus 19 g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~-~g~~~~lt~~~~~~~~~~~~~~~wSpD 97 (706)
|+...++.-|-. ....|+ +.=.+|.|+++..+ +.....||..+++ -|+..++... .. ++.+.-.-|
T Consensus 46 ~~~vkLtkePI~-~~~~Pk--~~ldfi~f~RDV~k----GkE~Hai~~~Nlk~~GEE~~i~sp-k~-----vRI~S~~yd 112 (313)
T d2hu7a1 46 GETVKLNREPIN-SVLDPH--YGVGRVILVRDVSK----GAEQHALFKVNTSRPGEEQRLEAV-KP-----MRILSGVDT 112 (313)
T ss_dssp SSCEECCSSCCS-EECEEC--TTBSEEEEEEECST----TSCCEEEEEEETTSTTCEEECTTS-CS-----BEEEEEEEC
T ss_pred CEEEEEeccccc-CcCCCc--cCcceEEEEeehhc----CcceeeEEEEccCCCCeeeEecCC-ce-----EEEEEeeec
Confidence 788888754432 233443 34558889987432 3667889999987 3666777422 21 455566679
Q ss_pred CcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCCCceecCCC---
Q 005240 98 STLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTP--- 174 (706)
Q Consensus 98 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g~~~~lt~~--- 174 (706)
++.++|+...+ ....||+++ .|+.+.|+.-
T Consensus 113 dk~vvF~Gase----------------------------------------------d~~~LYvie-gGklrkL~~vPpF 145 (313)
T d2hu7a1 113 GEAVVFTGATE----------------------------------------------DRVALYALD-GGGLRELARLPGF 145 (313)
T ss_dssp SSCEEEEEECS----------------------------------------------SCEEEEEEE-TTEEEEEEEESSC
T ss_pred CceEEEecccC----------------------------------------------CceEEEEEe-CCceeeeccCCCc
Confidence 99999984321 225566655 3355555432
Q ss_pred ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCC
Q 005240 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPA 230 (706)
Q Consensus 175 ~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~ 230 (706)
..++.+ .|++|+=...-.+. ....++.|+.++..+.++...+.
T Consensus 146 sFVtDI----~~d~I~G~g~~~g~---------~~sfF~adl~SG~lri~tpkeGS 188 (313)
T d2hu7a1 146 GFVSDI----RGDLIAGLGFFGGG---------RVSLFTSNLSSGGLRVFDSGEGS 188 (313)
T ss_dssp EEEEEE----ETTEEEEEEEEETT---------EEEEEEEETTTEEEEEECCSSEE
T ss_pred ceEEec----cCCeEEEEeeecCC---------cceEEEEecccCCEEEecCCCCc
Confidence 333443 47777654443332 34688999988888888877654
|
| >d1mo2a_ c.69.1.22 (A:) Erythromycin polyketide synthase {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterase domain of polypeptide, polyketide and fatty acid synthases domain: Erythromycin polyketide synthase species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=95.81 E-value=0.0069 Score=56.59 Aligned_cols=73 Identities=23% Similarity=0.181 Sum_probs=42.3
Q ss_pred CeEEEEcCCCCcCCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHhC---CCceeEEE
Q 005240 555 RFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAHA---PHLFCCGI 631 (706)
Q Consensus 555 G~~v~~~~~~~~~g~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~---p~~~~a~v 631 (706)
.+.|+..+.. |++.........+..++++..+| .+. .....+.++||||||.+|..++.+. +..+..++
T Consensus 70 ~~~V~al~~p---G~~~~e~~~~s~~~~a~~~~~~i---~~~--~~~~P~~L~GhS~Gg~vA~e~A~~l~~~g~~v~~lv 141 (255)
T d1mo2a_ 70 IAPVRAVPQP---GYEEGEPLPSSMAAVAAVQADAV---IRT--QGDKPFVVAGHSAGALMAYALATELLDRGHPPRGVV 141 (255)
T ss_dssp TCCEEEECCT---TSSTTCCEESSHHHHHHHHHHHH---HHT--TSSSCEEEEECSTTHHHHHHHHHHHHHHTCCCSEEE
T ss_pred CceEEEEeCC---CcCCCCCCCCCHHHHHHHHHHHH---HHh--CCCCCEEEEEeCCcHHHHHHHHHhhHhcCCCccEEE
Confidence 3666653332 33333222223444454444433 332 2235799999999999999888653 35577777
Q ss_pred eccC
Q 005240 632 ARSG 635 (706)
Q Consensus 632 ~~~~ 635 (706)
...+
T Consensus 142 lld~ 145 (255)
T d1mo2a_ 142 LIDV 145 (255)
T ss_dssp EEEC
T ss_pred EECC
Confidence 6665
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=95.55 E-value=0.76 Score=42.41 Aligned_cols=130 Identities=12% Similarity=0.158 Sum_probs=69.8
Q ss_pred ceEEEEccCCCc-eecC--CC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCC
Q 005240 157 AQLVLGSLDGTA-KDFG--TP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAED 232 (706)
Q Consensus 157 ~~l~~~~l~g~~-~~lt--~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~ 232 (706)
..+++++.+|+. ..+. .. .....+++.++|+ |+++... ...|++++.++.....+.. .+..
T Consensus 135 ~~~~~~~~~g~~~~~~g~~~~~~~~~~i~~d~~g~-i~v~d~~------------~~~V~~~d~~G~~~~~~g~-~g~~- 199 (279)
T d1q7fa_ 135 MRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQE-IFISDNR------------AHCVKVFNYEGQYLRQIGG-EGIT- 199 (279)
T ss_dssp TEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSE-EEEEEGG------------GTEEEEEETTCCEEEEESC-TTTS-
T ss_pred ceeeEeccCCceeecccccccccccceeeecccee-EEeeecc------------ccceeeeecCCceeeeecc-cccc-
Confidence 456666766633 2221 11 4556778888885 4444333 2479999999887666532 1111
Q ss_pred CCcccCccCCCCcceeeecCCCceEEEEEeccCCCCccccCccceeeeecCCCCCCCCc-eEEeec--ccccccceecCC
Q 005240 233 IPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP-EILHKL--DLRFRSVSWCDD 309 (706)
Q Consensus 233 ~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~-~~l~~~--~~~~~~~~wspD 309 (706)
..+..++..++|+ |++. +.. .+..|.+++. + |+. +.+... ......++..||
T Consensus 200 ---------~~P~giavD~~G~--i~Va-d~~---------~~~~v~~f~~---~-G~~~~~~~~~~~~~~p~~vav~~d 254 (279)
T d1q7fa_ 200 ---------NYPIGVGINSNGE--ILIA-DNH---------NNFNLTIFTQ---D-GQLISALESKVKHAQCFDVALMDD 254 (279)
T ss_dssp ---------CSEEEEEECTTCC--EEEE-ECS---------SSCEEEEECT---T-SCEEEEEEESSCCSCEEEEEEETT
T ss_pred ---------cCCcccccccCCe--EEEE-ECC---------CCcEEEEECC---C-CCEEEEEeCCCCCCCEeEEEEeCC
Confidence 2244678889986 6644 211 1123556665 3 443 333222 224556778899
Q ss_pred CceEEEEeeccccceEEEEE
Q 005240 310 SLALVNETWYKTSQTRTWLV 329 (706)
Q Consensus 310 g~~l~~~~~~~~~~~~l~~~ 329 (706)
|. |++.. . +...++|++
T Consensus 255 G~-l~V~~-~-n~~v~~fr~ 271 (279)
T d1q7fa_ 255 GS-VVLAS-K-DYRLYIYRY 271 (279)
T ss_dssp TE-EEEEE-T-TTEEEEEEC
T ss_pred Cc-EEEEe-C-CCeEEEEEe
Confidence 86 44432 2 233455555
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.43 E-value=0.89 Score=41.10 Aligned_cols=52 Identities=12% Similarity=0.155 Sum_probs=31.9
Q ss_pred ceEEEEcc-CCCce-ecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEE
Q 005240 157 AQLVLGSL-DGTAK-DFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRE 223 (706)
Q Consensus 157 ~~l~~~~l-~g~~~-~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 223 (706)
+.|.++|+ +++.. .+... ..+..++ +|+++|+..+.+ ..+.+|++..+....
T Consensus 35 g~i~vWd~~~~~~~~~l~~H~~~V~~v~--~~~~~l~s~s~D-------------~~i~~~~~~~~~~~~ 89 (293)
T d1p22a2 35 NTIKIWDKNTLECKRILTGHTGSVLCLQ--YDERVIITGSSD-------------STVRVWDVNTGEMLN 89 (293)
T ss_dssp SCEEEEESSSCCEEEEECCCSSCEEEEE--CCSSEEEEEETT-------------SCEEEEESSSCCEEE
T ss_pred CeEEEEECCCCcEEEEEecCCCCEeeee--cccceeeccccc-------------ccccccccccccccc
Confidence 46777788 55544 34433 5566655 578877654433 378899998665443
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=95.37 E-value=0.016 Score=56.89 Aligned_cols=124 Identities=13% Similarity=0.099 Sum_probs=68.4
Q ss_pred cccceeeC-----CCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecccCCCccccccccceEEecCCcEEEEEec
Q 005240 32 KINFVSWS-----PDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIP 106 (706)
Q Consensus 32 ~~~~~~~S-----PDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~~~~wSpDg~~l~~~~~ 106 (706)
...+|.+| +||++| |+.+ .....|-++|+++-+..++...+.. ..+..+.-+++++..|+...
T Consensus 84 D~HHP~~S~TdGtyDGryl-FVND--------kan~RVAvIdl~~fkt~kIi~iPn~---~~~HG~r~~~~p~T~YV~~~ 151 (459)
T d1fwxa2 84 DLHHVHMSFTEGKYDGRFL-FMND--------KANTRVARVRCDVMKCDAILEIPNA---KGIHGLRPQKWPRSNYVFCN 151 (459)
T ss_dssp CBCCEEEEEETTEEEEEEE-EEEE--------TTTTEEEEEETTTTEEEEEEECSSC---CSEEEEEECCSSBCSEEEEE
T ss_pred CcCCCcccccCCccceeEE-EEEc--------CCCceEEEEECcceeeeEEEecCCC---CCCceeecccCCCeEEEEcc
Confidence 35566666 689999 5543 5568999999999998888755432 11344555666665443321
Q ss_pred CCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccceEEEEccCC--CceecCCCceEeeeeeCC
Q 005240 107 SSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG--TAKDFGTPAVYTAVEPSP 184 (706)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~l~g--~~~~lt~~~~~~~~~~Sp 184 (706)
.+-.. +....+..+.. . . .-...+..+|.+. ...++.-++....+.+||
T Consensus 152 ~e~~v----P~pndg~~l~d---~-----~-----------------~y~~~~t~ID~~tm~V~~QV~V~g~ld~~~~s~ 202 (459)
T d1fwxa2 152 GEDET----PLVNDGTNMED---V-----A-----------------NYVNVFTAVDADKWEVAWQVLVSGNLDNCDADY 202 (459)
T ss_dssp ECSCE----ESSCSSSSTTC---G-----G------------------EEEEEEEEETTTTEEEEEEEESSCCCCEEECS
T ss_pred Ccccc----ccCCCCccccc---h-----h-----------------hcceEEEEEecCCceEEEEeeeCCChhccccCC
Confidence 11000 00000100000 0 0 0114556777743 233343345667889999
Q ss_pred CCcEEEEEeecc
Q 005240 185 DQKYVLITSMHR 196 (706)
Q Consensus 185 DG~~i~~~~~~~ 196 (706)
||+++++++.+.
T Consensus 203 dGK~af~TsyNS 214 (459)
T d1fwxa2 203 EGKWAFSTSYNS 214 (459)
T ss_dssp SSSEEEEEESCT
T ss_pred CCCEEEEEeccc
Confidence 999999887654
|
| >d1ku0a_ c.69.1.18 (A:) Lipase L1 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Bacterial lipase domain: Lipase L1 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.49 E-value=0.088 Score=51.48 Aligned_cols=37 Identities=14% Similarity=0.136 Sum_probs=28.8
Q ss_pred CcEEEEEechHHHHHHHHHHhCC-------------------------CceeEEEeccCCCC
Q 005240 602 SRIAVGGHSYGAFMTAHLLAHAP-------------------------HLFCCGIARSGSYN 638 (706)
Q Consensus 602 ~~i~i~G~S~GG~~a~~~~~~~p-------------------------~~~~a~v~~~~~~d 638 (706)
.+|-++||||||.-+-+++..-| ++++.+.+++....
T Consensus 105 ~kVnLIgHS~GGld~Ryl~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~V~SvTTIsTPH~ 166 (388)
T d1ku0a_ 105 GRVHIIAHSQGGQTARMLVSLLENGSQEEREYAKEHNVSLSPLFEGGHRFVLSVTTIATPHD 166 (388)
T ss_dssp CCEEEEEETTHHHHHHHHHHHHHHCCHHHHHHHHHHTCCCCGGGTCCCCCEEEEEEESCCTT
T ss_pred CceeEeecccccHHHHHHHHHhccccccccccccccccccccccccCCcceEEEEeccCCCC
Confidence 58999999999999988875432 36888888886544
|
| >d1ivya_ c.69.1.5 (A:) Human 'protective protein', HPP {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Serine carboxypeptidase-like domain: Human 'protective protein', HPP species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.43 E-value=0.26 Score=49.62 Aligned_cols=152 Identities=11% Similarity=-0.032 Sum_probs=80.1
Q ss_pred eEEEEEEccCCeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCC---chHHHHHHHCCeEE
Q 005240 482 KEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMT---PTSSLIFLARRFAV 558 (706)
Q Consensus 482 ~~~~~~~~~dg~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~G~~v 558 (706)
.-.-.+...++..+..|++...+ ++.. .|++|++-|||=++.--....-.||....... ....-.|.+..-.|
T Consensus 21 ~ysGyl~~~~~~~lffw~~~s~~-~~~~---~Pl~~wlnGGPG~SS~~g~~~e~GP~~v~~~~~~~~~N~~SW~~~anll 96 (452)
T d1ivya_ 21 QYSGYLKSSGSKHLHYWFVESQK-DPEN---SPVVLWLNGGPGCSSLDGLLTEHGPFLVQPDGVTLEYNPYSWNLIANVL 96 (452)
T ss_dssp EEEEEEECSTTEEEEEEEECCSS-CGGG---SCEEEEECCTTTBCTHHHHHTTTSSEEECTTSSCEEECTTCGGGSSEEE
T ss_pred ceeeeeecCCCceEEEEEEEcCC-CCCC---CCEEEEECCCCcHHHHHHHHHccCCcEEcCCCCeeccCCcchhcccCEE
Confidence 33344455567788888885543 3333 69999999998543211111112222111110 01112234443334
Q ss_pred EEcCCCCcCCCCCCCCc--hhhHHHHHHHHHHHH-HHHHHcCCCCCCcEEEEEechHHHHHHHHHHh---CCC-ceeEEE
Q 005240 559 LAGPSIPIIGEGDKLPN--DRFVEQLVSSAEAAV-EEVVRRGVADPSRIAVGGHSYGAFMTAHLLAH---APH-LFCCGI 631 (706)
Q Consensus 559 ~~~~~~~~~g~g~~~~~--~~~~~~~~~D~~~~~-~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~---~p~-~~~a~v 631 (706)
+. +---..|+...... ..--.+...|+..++ +|+..-+....+++.|+|-||||..+..++.. .+. .+++++
T Consensus 97 fI-DqPvGtGfS~~~~~~~~~~~~~~a~d~~~~l~~f~~~fp~~~~~~~yi~GESYgG~y~P~ia~~i~~~~~i~l~Gi~ 175 (452)
T d1ivya_ 97 YL-ESPAGVGFSYSDDKFYATNDTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQDPSMNLQGLA 175 (452)
T ss_dssp EE-CCSTTSTTCEESSCCCCCBHHHHHHHHHHHHHHHHHHSGGGTTSCEEEEEETTHHHHHHHHHHHHTTCTTSCEEEEE
T ss_pred EE-ecCCCcccccCCCCCCCCCcHHHHHHHHHHHHHHHHhchhhcCCceEEeeccccchhhHHHHHHHHhcCcccccceE
Confidence 33 21112233211111 112234556665555 45554433445699999999999988877743 222 488999
Q ss_pred eccCCCC
Q 005240 632 ARSGSYN 638 (706)
Q Consensus 632 ~~~~~~d 638 (706)
...|+.+
T Consensus 176 igng~~d 182 (452)
T d1ivya_ 176 VGNGLSS 182 (452)
T ss_dssp EESCCSB
T ss_pred cCCCccC
Confidence 9999876
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=93.27 E-value=2.1 Score=40.70 Aligned_cols=162 Identities=15% Similarity=0.041 Sum_probs=83.8
Q ss_pred ceeEeecCCCCCCCCeeeeecC---CCCC--cccc--eeeCCCCCeEEEEeeccccccccCCceeEEEEEcCCCceeecc
Q 005240 6 GIGIHRLLPDDSLGPEKEVHGY---PDGA--KINF--VSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLF 78 (706)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~i~~~---~~~~--~~~~--~~~SPDG~~laf~~~~~~~~~~~~~~~~l~~~d~~~g~~~~lt 78 (706)
.|++.|+.. ...+.+.++-. +... .... ..-.+||+...|+.+-. ......+||.++.++.+.+.+.
T Consensus 69 ~i~~~dl~~--~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvnH~----~~~~~ieif~~~~~~~~l~~~~ 142 (340)
T d1v04a_ 69 KILLMDLNE--KEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHP----GSSSTVEVFKFQEEEKSLLHLK 142 (340)
T ss_dssp EEEEEETTS--SSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEECS----TTCCEEEEEEEETTTTEEEEEE
T ss_pred eEEEEecCC--CCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEecc----CCCceeEEEEEeCCCCeEEEEe
Confidence 577888876 33344444311 1110 1122 22357888777877631 1144567777776665554442
Q ss_pred cCCCccccccccceEEecCCcEEEEEecCCCCCCCCCCCCCCCCceeecCCCcccccccchhccCCchhhhhhhhcccce
Q 005240 79 ESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQ 158 (706)
Q Consensus 79 ~~~~~~~~~~~~~~~wSpDg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 158 (706)
......+. .+.++....||+ ++++-+. .... + ..+... .+.....+.
T Consensus 143 ~v~~~~~~-~pNDv~~~~~g~-fy~Tnd~-~~~~-----------------~---~~~~~e----------~~~~~~~g~ 189 (340)
T d1v04a_ 143 TIRHKLLP-SVNDIVAVGPEH-FYATNDH-YFID-----------------P---YLKSWE----------MHLGLAWSF 189 (340)
T ss_dssp EECCTTCS-SEEEEEEEETTE-EEEEESC-SCCS-----------------H---HHHHHH----------HHTTCCCEE
T ss_pred ecCCcccc-CccceEEecCCC-EEEecCc-cCcC-----------------h---hhhhhh----------HhhcCCcee
Confidence 22221111 256788888887 4554211 0000 0 000000 000113355
Q ss_pred EEEEccCCCceecCCC-ceEeeeeeCCCCcEEEEEeeccCcccccccccccceEEEEecCCC
Q 005240 159 LVLGSLDGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK 219 (706)
Q Consensus 159 l~~~~l~g~~~~lt~~-~~~~~~~~SpDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 219 (706)
++.++.. +.+.+..+ .....+++|||+++|++..... .+|++|++++.
T Consensus 190 v~~~~~~-~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~------------~~i~~y~~~~~ 238 (340)
T d1v04a_ 190 VTYYSPN-DVRVVAEGFDFANGINISPDGKYVYIAELLA------------HKIHVYEKHAN 238 (340)
T ss_dssp EEEECSS-CEEEEEEEESSEEEEEECTTSSEEEEEEGGG------------TEEEEEEECTT
T ss_pred EEEEcCC-ceEEEcCCCCccceeEECCCCCEEEEEeCCC------------CeEEEEEeCCC
Confidence 6555532 44444444 5677999999999998887653 57888888743
|
| >d1lgya_ c.69.1.17 (A:) Triacylglycerol lipase {Rhizopus niveus [TaxId: 4844]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Triacylglycerol lipase species: Rhizopus niveus [TaxId: 4844]
Probab=89.77 E-value=0.26 Score=45.36 Aligned_cols=41 Identities=24% Similarity=0.229 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHh
Q 005240 580 EQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAH 622 (706)
Q Consensus 580 ~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~ 622 (706)
.....++..+++.++++.. ..+|.+.|||+||.+|..++..
T Consensus 113 ~~~~~~i~~~v~~~~~~~~--~~~i~vtGHSLGGAlA~L~a~~ 153 (265)
T d1lgya_ 113 EQVVNDYFPVVQEQLTAHP--TYKVIVTGHSLGGAQALLAGMD 153 (265)
T ss_dssp HHHHHHHHHHHHHHHHHCT--TCEEEEEEETHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCC--CceEEEEecccchHHHHHHHHH
Confidence 4455666677776665432 3699999999999999887753
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=89.11 E-value=0.71 Score=44.93 Aligned_cols=107 Identities=8% Similarity=0.034 Sum_probs=61.9
Q ss_pred CCCcEEEEEeeccCcccccccccccceEEEEecCCCeeEEcccCCCCCCCCcccCccCCCCcceeeecCCCceEEEEEec
Q 005240 184 PDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQ 263 (706)
Q Consensus 184 pDG~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~g~~~~~~spdg~~~l~~~~~~ 263 (706)
+|||+|+.+... ..+|.++|++.-+..++...+.. .+...+..++++++ .|++++.
T Consensus 97 yDGrylFVNDka------------n~RVAvIdl~~fkt~kIi~iPn~-----------~~~HG~r~~~~p~T-~YV~~~~ 152 (459)
T d1fwxa2 97 YDGRFLFMNDKA------------NTRVARVRCDVMKCDAILEIPNA-----------KGIHGLRPQKWPRS-NYVFCNG 152 (459)
T ss_dssp EEEEEEEEEETT------------TTEEEEEETTTTEEEEEEECSSC-----------CSEEEEEECCSSBC-SEEEEEE
T ss_pred cceeEEEEEcCC------------CceEEEEECcceeeeEEEecCCC-----------CCCceeecccCCCe-EEEEccC
Confidence 599999776654 35899999998887776655422 11223445556665 4444322
Q ss_pred cCC-------CC-ccccCccceeeeecCCCCCCCCceEEeecccccccceecCCCceEEEEe
Q 005240 264 DRG-------DA-NVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNET 317 (706)
Q Consensus 264 ~~~-------~~-~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~wspDg~~l~~~~ 317 (706)
... .. .....-+..+..+|. ++.+...-...++......+++||+++++++
T Consensus 153 e~~vP~pndg~~l~d~~~y~~~~t~ID~---~tm~V~~QV~V~g~ld~~~~s~dGK~af~Ts 211 (459)
T d1fwxa2 153 EDETPLVNDGTNMEDVANYVNVFTAVDA---DKWEVAWQVLVSGNLDNCDADYEGKWAFSTS 211 (459)
T ss_dssp CSCEESSCSSSSTTCGG-EEEEEEEEET---TTTEEEEEEEESSCCCCEEECSSSSEEEEEE
T ss_pred ccccccCCCCccccchhhcceEEEEEec---CCceEEEEeeeCCChhccccCCCCCEEEEEe
Confidence 110 00 000011234556777 4444433333466778899999999888765
|
| >d1tiaa_ c.69.1.17 (A:) Triacylglycerol lipase {Penicillium camembertii [TaxId: 5075]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Triacylglycerol lipase species: Penicillium camembertii [TaxId: 5075]
Probab=88.51 E-value=0.29 Score=45.27 Aligned_cols=41 Identities=22% Similarity=0.254 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHh
Q 005240 580 EQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAH 622 (706)
Q Consensus 580 ~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~ 622 (706)
.....++...++.+.++.. ..+|.+.|||+||.+|..++..
T Consensus 117 ~~~~~~i~~~i~~~~~~~~--~~~i~iTGHSLGGAlA~L~a~~ 157 (271)
T d1tiaa_ 117 KLVRDDIIKELKEVVAQNP--NYELVVVGHSLGAAVATLAATD 157 (271)
T ss_pred HHHHHHHHHHHHHHHHhCC--CceEEEeccchHHHHHHHHHHH
Confidence 3445566666666655431 3589999999999999888754
|
| >d1tiba_ c.69.1.17 (A:) Triacylglycerol lipase {Thermomyces lanuginosus, formerly Humicola lanuginosa [TaxId: 5541]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Triacylglycerol lipase species: Thermomyces lanuginosus, formerly Humicola lanuginosa [TaxId: 5541]
Probab=88.23 E-value=0.38 Score=44.34 Aligned_cols=41 Identities=24% Similarity=0.337 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHh
Q 005240 580 EQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAH 622 (706)
Q Consensus 580 ~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~ 622 (706)
.....++...++.++++.. .-+|.+.|||+||.+|..++..
T Consensus 118 ~~~~~~v~~~v~~~~~~~~--~~~i~vtGHSLGGalA~l~a~~ 158 (269)
T d1tiba_ 118 RSVADTLRQKVEDAVREHP--DYRVVFTGHSLGGALATVAGAD 158 (269)
T ss_dssp HHHHHHHHHHHHHHHHHCT--TSEEEEEEETHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCC--CcceeeeccchHHHHHHHHHHH
Confidence 3445666677776666532 2599999999999999888854
|
| >d1uwca_ c.69.1.17 (A:) Feruloyl esterase A {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Feruloyl esterase A species: Aspergillus niger [TaxId: 5061]
Probab=87.94 E-value=0.41 Score=43.90 Aligned_cols=40 Identities=28% Similarity=0.295 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHHh
Q 005240 581 QLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLAH 622 (706)
Q Consensus 581 ~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~ 622 (706)
....++...++.++++.. ..+|.+.|||+||.+|..++..
T Consensus 106 ~i~~~i~~~i~~~~~~~~--~~~i~vTGHSLGGAlA~L~a~~ 145 (261)
T d1uwca_ 106 SVQDQVESLVKQQASQYP--DYALTVTGHSLGASMAALTAAQ 145 (261)
T ss_dssp HHHHHHHHHHHHHHHHST--TSEEEEEEETHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCC--CcceEEeccchhHHHHHHHHHH
Confidence 445666667776666531 2589999999999999877744
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=87.44 E-value=9.7 Score=37.32 Aligned_cols=14 Identities=7% Similarity=0.423 Sum_probs=11.0
Q ss_pred ccceEEecCCcEEE
Q 005240 89 FGSFVWVNNSTLLI 102 (706)
Q Consensus 89 ~~~~~wSpDg~~l~ 102 (706)
...++|.|||+.|+
T Consensus 29 P~~la~~pdg~llV 42 (450)
T d1crua_ 29 PHALLWGPDNQIWL 42 (450)
T ss_dssp EEEEEECTTSCEEE
T ss_pred ceEEEEeCCCeEEE
Confidence 55789999998654
|
| >d3tgla_ c.69.1.17 (A:) Triacylglycerol lipase {Rhizomucor miehei [TaxId: 4839]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Triacylglycerol lipase species: Rhizomucor miehei [TaxId: 4839]
Probab=87.19 E-value=0.48 Score=43.53 Aligned_cols=40 Identities=20% Similarity=0.198 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCcEEEEEechHHHHHHHHHH
Q 005240 580 EQLVSSAEAAVEEVVRRGVADPSRIAVGGHSYGAFMTAHLLA 621 (706)
Q Consensus 580 ~~~~~D~~~~~~~l~~~~~id~~~i~i~G~S~GG~~a~~~~~ 621 (706)
.....++...++.+.++.. ..+|.+.|||+||.+|..++.
T Consensus 112 ~~v~~~i~~~i~~~~~~~~--~~~i~vtGHSLGGAlA~L~a~ 151 (265)
T d3tgla_ 112 GEVQNELVATVLDQFKQYP--SYKVAVTGHSLGGATVLLCAL 151 (265)
T ss_dssp HHHHHHHHHHHHHHHHHCT--TSEEEEEEETHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCC--CceEEEecccchHHHHHHHHH
Confidence 3445566666665555432 369999999999999988764
|
| >d1wpxa1 c.69.1.5 (A:1-421) Serine carboxypeptidase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Serine carboxypeptidase-like domain: Serine carboxypeptidase II species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.30 E-value=3.8 Score=40.07 Aligned_cols=142 Identities=8% Similarity=0.011 Sum_probs=70.6
Q ss_pred CeEEEEEEEecCCCCCCCCCCceEEEEEcCCCCCCcCcCCcccCCCCCcCCCC--chHHHHHHHCCeEEEEcCCCCcCCC
Q 005240 492 GVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMT--PTSSLIFLARRFAVLAGPSIPIIGE 569 (706)
Q Consensus 492 g~~i~~~l~~P~~~~~~~~~~~p~vv~~hGg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~G~~v~~~~~~~~~g~ 569 (706)
+..+..|++...+ ++.+ .|+||++-|||=+++-.....-.||....... ....-.|.+..-+|+. +---+.|+
T Consensus 27 ~~~lfyw~~~s~~-~~~~---~Pl~~WlnGGPG~SS~~g~~~e~GP~~i~~~~~~~~N~~sW~~~anllfi-D~PvGtGf 101 (421)
T d1wpxa1 27 DKHFFFWTFESRN-DPAK---DPVILWLNGGPGCSSLTGLFFELGPSSIGPDLKPIGNPYSWNSNATVIFL-DQPVNVGF 101 (421)
T ss_dssp CCEEEEEEECCSS-CTTT---SCEEEEECCTTTBCTHHHHHHTTSSEEECTTSCEEECTTCGGGSSEEEEE-CCSTTSTT
T ss_pred CceEEEEEEEeCC-CCCC---CCEEEEECCCCcHHHHHHHHHhcCCcEECCCCccccCCcccccccCEEEE-ecCCCCCc
Confidence 4568777775443 4443 59999999998543211111111111111000 0011123333333333 21122243
Q ss_pred CCCCCch-hhHHHHHHHHHHHHHHHHHc-CC-C-CCCcEEEEEechHHHHHHHHHHh---CCC---ceeEEEeccCCCC
Q 005240 570 GDKLPND-RFVEQLVSSAEAAVEEVVRR-GV-A-DPSRIAVGGHSYGAFMTAHLLAH---APH---LFCCGIARSGSYN 638 (706)
Q Consensus 570 g~~~~~~-~~~~~~~~D~~~~~~~l~~~-~~-i-d~~~i~i~G~S~GG~~a~~~~~~---~p~---~~~a~v~~~~~~d 638 (706)
....... ..-....+|+..+++...+. +. . -...+.|+|-||||..+..++.+ ..+ -+++++...|..|
T Consensus 102 Sy~~~~~~~~~~~~a~d~~~fl~~f~~~fp~~~~k~~~~yi~GESYgG~yvP~la~~i~~~~~~~inlkGi~iGng~~d 180 (421)
T d1wpxa1 102 SYSGSSGVSNTVAAGKDVYNFLELFFDQFPEYVNKGQDFHIAGESYAGHYIPVFASEILSHKDRNFNLTSVLIGNGLTD 180 (421)
T ss_dssp CBCSSCCCCSHHHHHHHHHHHHHHHHHHCTHHHHTCCCEEEEEETTHHHHHHHHHHHHHHCSSCSSCCCEEEEESCCCC
T ss_pred eecCCccccchHHHHHHHHHHHHHHHHhChhhhccCCCcEEeeecccccccHHHHHHHHHccCCCcceeeeEecCCccc
Confidence 3221111 11234456666666544443 21 2 23589999999999987766622 222 4789999998876
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=85.63 E-value=14 Score=34.41 Aligned_cols=53 Identities=15% Similarity=0.028 Sum_probs=28.7
Q ss_pred CCeeeeecCCCCCcccceeeCCCCCeEEEEeecccccc--ccCCceeEEEEEcCCCc
Q 005240 19 GPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDN--VSSCKLRVWIADAETGE 73 (706)
Q Consensus 19 g~~~~i~~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~--~~~~~~~l~~~d~~~g~ 73 (706)
+.-+.|.++..+ .-.....|||..+..+........ ..+....|+++|++..+
T Consensus 25 ~~C~~i~g~~~G--~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~ 79 (340)
T d1v04a_ 25 PNCNLVKGIDNG--SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKE 79 (340)
T ss_dssp SSCEECTTCCSC--CCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSS
T ss_pred CCceEcCCCCCC--cceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCC
Confidence 666777655445 445788899855533221100000 11335789999987643
|
| >d1ac5a_ c.69.1.5 (A:) Serine carboxypeptidase II {Baker's yeast (Saccharomyces cerevisiae), kex1(delta)p [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Serine carboxypeptidase-like domain: Serine carboxypeptidase II species: Baker's yeast (Saccharomyces cerevisiae), kex1(delta)p [TaxId: 4932]
Probab=80.82 E-value=8.2 Score=38.31 Aligned_cols=58 Identities=10% Similarity=0.004 Sum_probs=37.3
Q ss_pred HHHHHHHHHHH-HHHHcCCCCCCcEEEEEechHHHHHHHHHHhC-----------C-CceeEEEeccCCCC
Q 005240 581 QLVSSAEAAVE-EVVRRGVADPSRIAVGGHSYGAFMTAHLLAHA-----------P-HLFCCGIARSGSYN 638 (706)
Q Consensus 581 ~~~~D~~~~~~-~l~~~~~id~~~i~i~G~S~GG~~a~~~~~~~-----------p-~~~~a~v~~~~~~d 638 (706)
+...++..+++ |+..-+..-..++.|+|-||||.-+-.++..- + =-++.++...|..+
T Consensus 146 ~~a~~~~~fl~~f~~~fp~~~~~~~yI~GESYgG~YvP~la~~i~~~n~~~~~~~~~inLkGi~IGNg~~d 216 (483)
T d1ac5a_ 146 DVTKHFMDFLENYFKIFPEDLTRKIILSGESYAGQYIPFFANAILNHNKFSKIDGDTYDLKALLIGNGWID 216 (483)
T ss_dssp HHHHHHHHHHHHHHHHCTTGGGSEEEEEEEETHHHHHHHHHHHHHHHHHHCCSTTSCCEEEEEEEEEECCC
T ss_pred HHHHHHHHHHHHHHHhCcccccCCeEEeecccccchHHHHHHHHHHhccccccCCCcccceeeeecCCccC
Confidence 44555555444 44443333347899999999998876666331 1 14888888888766
|