Citrus Sinensis ID: 005259

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-----
Protein Sequence
MASWLKAAEDLFEVVDRRAKLVVNELADEQSDFQTPASNGQGSQAKKIKSRIKAQRRHSADESLKINDTAREQANTQASPVDVTPNKDTATLAVEKETITTGKTQKNGEQQQTNERDAPSIPLTEQSKDMSKHDADRVEIPETFTDLDTATPNGEILNENDSDVHLNHPPSPLPPKEMGIVNEDRIDDAGQITKSADADAPLKIDSKIQAVDPPVNSESSLKDADVKVETLSNKRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQSEAERSRVSRRSWSSWEEDAEMKSLENNGRPLPLHHRHIAGASVQLQKAAKLLDSGAVRATRFLWRYPIARIILLFYLVFVHLFLMYLLHRLQEQADNFAAREVAESMGLTTSNLP
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHcccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccHHHHccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHcccHHcccccHcHcHccccHHHHHHccHHHHHHHccccccccHHHHHHHccccHHHccHHHHHHcccccccccccccccHHHHHcccccccccHHcHHHccHHHHHHHHHHHHHHHccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
MASWLKAAEDLFEVVDRRAKLVVNELAdeqsdfqtpasngqgsqAKKIKSRIKAQRRHSADESLKINDTAREQantqaspvdvtpnkdtATLAVEKEtittgktqkngeqqqtnerdapsiplteqskdmskhdadrveipetftdldtatpngeilnendsdvhlnhppsplppkemgivnedriddagqitksadadaplkidskiqavdppvnsesslkdaDVKVETLSNKRKQqalkaddpptkeqdQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKrgqkkspeEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQSEAERsrvsrrswssweEDAEMKSlenngrplplhhrhIAGASVQLQKAAKLLDSGAVRATRFLWRYPIARIILLFYLVFVHLFLMYLLHRLQEQADNFAAREVAEsmglttsnlp
Flexible Loop (DISEMBL)
MASWLKAAEDLFEVVDRRAKLVVNELadeqsdfqtpasngqgsqakKIKSRIKAqrrhsadeslkindtareqantqaspvdvtpnkdTATLAVEketittgktqkngeqqqtnerdapsiplteqskdmskhdaDRVEIPetftdldtatpNGEILNENDSDVHLNHPPSPLPPKEMGIVNEDRIDDAGQITKsadadaplkidskiqavdppvnsesslkdaDVKVETLSNKrkqqalkaddpptkeqDQLDEAQGLLKTtistgqskeaRLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEEraahnatkmaAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKrdaehysreeHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLqevqseaersrvsrrswssweeDAEMKSLENNGRPLPLHHRHIAGASVQLQKAAKLLDSGAVRATRFLWRYPIARIILLFYLVFVHLFLMYLLHRLQEQADNFAAREVAEsmglttsnlp
Low Complexity Region (SEG)
MASWLKAAEDLFEVVDRRAKLVVNELADEQSDFQTPASNGQGSQAKKIKSRIKAQRRHSADESLKINDTAREQANTQASPVDVTPNKDTATLAVEKETITTGKTQKNGEQQQTNERDAPSIPLTEQSKDMSKHDADRVEIPETFTDLDTATPNGEILNENDSDVHLNHPPSPLPPKEMGIVNEDRIDDAGQITKSADADAPLKIDSKIQAVDPPVNSESSLKDADVKVETLSNKRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQalreelasverraeeeraaHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQevqseaersrvsrrswssweedaeMKSLENNGRPLPLHHRHIAGASVQLQKAAKLLDSGAVRATRFLWRYPIARIIllfylvfvhlflmyllhRLQEQADNFAAREVAESMGLTTSNLP
Disordered region (IsUnstruct)
****LKAAEDLFEVVDRRAKLVVN************************************************************************************************************************************************************************************************************************************************************VCA********************************************************************************************************************************************************************************AMLEVECA**************************************************************************************YRELTDLLYYKQT***************************************************************RHIAGASVQLQKAAKLLDSGAVRATRFLWRYPIARIILLFYLVFVHLFLMYLLHRLQEQA********************
Disordered Region (DISOPRED)
***WLKAAEDL*****************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************LLDSGAVRATRFLWRYPIARIILLFYLVFVHLFLMYLLHRL*****************L******
Disordered Region (DISEMBL)
MASWLKAAEDLFEVVDRRAKLVVNELADEQS*******************************SLKINDTAR************TPNKDTATLAVEKETITTG***************APSIPLT**********ADRVEIPETFTDLDTATPNGEILNENDSDVHLNHPPSPLPPKEMGIVNEDRIDDAGQITKSADADAPLKIDSKIQAV***********DADVKVETLSN********************DEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEA*****************QMQAW*****************LSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNR***************************KSLENNGRPLPLHHRHIAGASVQLQKAAKLLDSGAVRATRFLWRYPIARIILLFYLVFVHLFLMYLLHRLQEQADNFAAREVAES*********
Disordered Region (DISPRO)
**SWLKAAEDLFEVVDRRAKLVVNELADE*****************************************************************************************************************************************************************************K*DSKIQAV****N**SSLKDADVKVETLSNKRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQSEAERSRVSRR******EDAEMKSLENNGRPLPLHHRHIAGASVQLQKAAKLLDSGAVRATRFLWRYPIARIILLFYLVFVHLFLMYLLHRLQEQADNFA*REV*ES*GLT*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASWLKAAEDLFEVVDRRAKLVVNELADEQSDFQTPASNGQGSQAKKIKSRIKAQRRHSADESLKINDTAREQANTQASPVDVTPNKDTATLAVEKETITTGKTQKNGEQQQTNERDAPSIPLTEQSKDMSKHDADRVEIPETFTDLDTATPNGEILNENDSDVHLNHPPSPLPPKEMGIVNEDRIDDAGQITKSADADAPLKIDSKIQAVDPPVNSESSLKDADVKVETLSNKRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLAEAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxMxxxxxxxxxxxxxxxxxxxxxHNATKMAAMEREVELEHRAAEASMALARIQRIxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSPEEANQAIQxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxEHMELEKRYRELTDLLYYKQTQLETMASExxxxxxxxxxxxxxxxxxxxxxxxxxxxRRSWSSWEEDAEMKSLENNGRPLPLHHRHIAGASVQLQKAAKLLDSGAVRATRFLWRYPIARIILLFYLVFVHLFLMYLLHRLQEQADNFAAREVAESMGLTTSNLP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	705	2.2.26 [Sep-21-2011]
Q8S8N9	707	Golgin candidate 1 OS=Ara	yes	no	0.950	0.947	0.610	0.0
Q5JLY8	709	Golgin-84 OS=Oryza sativa	yes	no	0.951	0.946	0.565	0.0
Q6GNT7	722	Golgin subfamily A member	N/A	no	0.564	0.551	0.283	9e-18
Q9QYE6	729	Golgin subfamily A member	yes	no	0.500	0.484	0.265	2e-14
Q8TBA6	731	Golgin subfamily A member	yes	no	0.500	0.482	0.265	6e-14
Q3ZU82	728	Golgin subfamily A member	yes	no	0.282	0.273	0.295	1e-13
B0F9L7	668	Golgin candidate 2 OS=Ara	no	no	0.357	0.377	0.286	1e-12
Q7SXE4	760	Golgin subfamily A member	yes	no	0.201	0.186	0.298	8e-12
Q8SZ63	516	Golgin-84 OS=Drosophila m	yes	no	0.178	0.244	0.3	3e-07

>sp|Q8S8N9|GOGC1_ARATH Golgin candidate 1 OS=Arabidopsis thaliana GN=GC1 PE=2 SV=2

 Score =  785 bits (2028), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/722 (61%), Positives = 534/722 (73%), Gaps = 52/722 (7%)

Query: 1   MASWLKAAEDLFEVVDRRAKLVVNELADEQSDFQTPASNGQGSQAKKIKSRIKAQRRHSA 60
           MASWLKAAEDLFEVVDRRAK VV +L++EQ+D Q PAS  +GSQ K+  S+   +++   
Sbjct: 1   MASWLKAAEDLFEVVDRRAKSVVEDLSEEQNDLQLPASGRKGSQGKRTSSK---KKKLVK 57

Query: 61  DESLKINDTAREQANTQASPVDVTPNKDTATLAVEKETITTGKTQKNGEQQQTNE--RDA 118
           +ES    D++ +Q+    S  +V P+K + +     ET ++G      E   T+   +  
Sbjct: 58  EESSNKRDSSGDQSGPGVSQSEVPPSKSSVST---DETSSSGPVLLTREIHPTDADVQSV 114

Query: 119 PSIPLTEQSKDMSKHDADRVEIPETFTDLD---TATPNGEILNENDSDVHLNHPPSP-LP 174
            S+PL+      +K D   V   E+  D D   +   +G+I   NDS V     PSP LP
Sbjct: 115 LSLPLSVAD---TKSDDAAVVAQESIVDGDRSESKHADGDI--PNDSLVQ----PSPSLP 165

Query: 175 PKEMGIVNEDRIDDAGQITKSADADAPLK-----IDSKIQAVDPPVNSESSLKDA--DVK 227
            KE+ +V  + + DA +     + D   K     +DS + A  P VN  +  +    +VK
Sbjct: 166 DKEIEVVVSENLMDAPKNGTQRELDDSSKRDVENLDSVVHA--PSVNEGNVAQSTGDEVK 223

Query: 228 VETL---------------SNKRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEA 272
           V T                +N +++Q  +AD    K QDQL+EAQGLLK T+STGQSKEA
Sbjct: 224 VGTSINLEKEQEPKVPVTSTNLKREQDRRADTTSMKIQDQLEEAQGLLKATVSTGQSKEA 283

Query: 273 RLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVES 332
           RLARVCAGLSSRLQE K+ENAQLEELL AE+EL++SYEA I+ L+++LS  KSEVTKVES
Sbjct: 284 RLARVCAGLSSRLQEIKAENAQLEELLTAEQELTKSYEASIRHLQKDLSAAKSEVTKVES 343

Query: 333 NLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALR 392
           ++ EALAAKNSEIETLVS++DALK QAAL+EG L+SLQ +MESIMRNREL ETRM+QALR
Sbjct: 344 SMVEALAAKNSEIETLVSAMDALKNQAALNEGKLSSLQGDMESIMRNRELAETRMMQALR 403

Query: 393 EELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELE 452
           EELA+ ERRAEEER+AHNATKMAAMERE ELEHRA +AS AL RIQRIADERTAK  + E
Sbjct: 404 EELATTERRAEEERSAHNATKMAAMERERELEHRAVDASTALVRIQRIADERTAKVADFE 463

Query: 453 QKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAEN 512
           QKVA+LE EC +L QELQDME R +RGQKK+P+EANQ IQ+QAWQDEV+RARQGQRDAE 
Sbjct: 464 QKVALLEAECTSLNQELQDMEVRARRGQKKAPDEANQVIQIQAWQDEVDRARQGQRDAEE 523

Query: 513 KLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKA 572
           KLS +EAE+QK+RVEMAAMKRDAEHYSR+EH ELEKRYRELTDLLYYKQTQLETMASEKA
Sbjct: 524 KLSLMEAEMQKLRVEMAAMKRDAEHYSRQEHTELEKRYRELTDLLYYKQTQLETMASEKA 583

Query: 573 AAEFQLEKEMNRLQEVQSEAERSRVSRRSWSSWEEDAEMKSLENNGRPLPLHHRHIAGAS 632
           AAEFQLEKE+ RL E Q E E+SRVSRR+ ++WEED+E+K+LE    PLPL+HRH+A AS
Sbjct: 584 AAEFQLEKEVKRLHEAQVEVEKSRVSRRASATWEEDSEIKTLE----PLPLYHRHMATAS 639

Query: 633 VQLQKAAKLLDSGAVRATRFLWRYPIARIILLFYLVFVHLFLMYLLHRLQEQADNFAARE 692
            QLQ A KLLDSGAVRATRFLWRYPIAR+ LLFYLVFVHLFLMYL+HRLQEQA+   A+E
Sbjct: 640 TQLQNAVKLLDSGAVRATRFLWRYPIARMFLLFYLVFVHLFLMYLIHRLQEQAE---AQE 696

Query: 693 VA 694
           VA
Sbjct: 697 VA 698

Golgi matrix protein playing a role in tethering of vesicles to Golgi membranes and in maintaining the overall structure of the Golgi apparatus.
Arabidopsis thaliana (taxid: 3702)

>sp|Q5JLY8|GOGA5_ORYSJ Golgin-84 OS=Oryza sativa subsp. japonica GN=Os01g0744400 PE=2 SV=1

 Score =  701 bits (1808), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/743 (56%), Positives = 505/743 (67%), Gaps = 72/743 (9%)

Query: 1   MASWLKAAEDLFEVVDRRAKLVVNELADEQSDFQTPASNGQGSQAKKIK----------- 49
           MASWLK AEDL EVVDRRAK+V  EL+DEQS  Q   S+ Q  QAKK K           
Sbjct: 1   MASWLKVAEDLLEVVDRRAKIVATELSDEQSSPQPSGSSSQEGQAKKGKLREKGPLKLAT 60

Query: 50  ----SRIKAQR----RHSADESLKINDT-----------AREQANTQASPVDVTPNKDTA 90
               SR  AQ+    R    E +KI                  +    S  DV    D  
Sbjct: 61  GDAGSRTAAQKERKSRQPPRERIKIEKIRPSPPVDSSSVDASASKPDVSSSDVKGLDDDG 120

Query: 91  TLAVEKETITTGKTQKNGEQQQTNERDAPSIPLTEQSKDMSKHDADRVEIPETFTDLDTA 150
               E++ +   K     E   T         +  QS + S  DA  V        +D A
Sbjct: 121 GAEKEEKVVVDRKNDIGAEVVDTE--------VEVQSTERSAEDAAIV--------VDGA 164

Query: 151 TPNGEILNENDSDVHLNHPPSPLPPKEMGIVNEDRIDDAGQITKSAD---ADAPLKIDSK 207
             +G      +S      P  P    E  I N+D      +I  + +    D+ +++  +
Sbjct: 165 ADSGNSEGAAESSA----PSVPDERCEPSISNQD-----AEIVSAVNLEEKDSAMEVIHE 215

Query: 208 IQAVDPPVNSESSLKDADVKVETLSNK----RKQQALKADDPPTKEQDQLDEAQGLLKTT 263
               + P +++ S K  D K E LS+       QQ  K D    K+QDQL+EA+GLLK  
Sbjct: 216 KNIKEVP-DTQVSGKSQDSKREGLSDSPESTENQQEHKLDSGSVKDQDQLEEARGLLKNV 274

Query: 264 ISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVY 323
           + TGQSKEARLARVCAGLSSRLQEYKSENAQLEELLV ERE   SYEA +KQL+QELS+ 
Sbjct: 275 VKTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVQEREKCSSYEAHMKQLQQELSMS 334

Query: 324 KSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELT 383
           + E ++ ESN+ +AL AKN+EIE+LV S+D+ KK+AA SE  LA+LQ +M+ + RNRELT
Sbjct: 335 RVEGSRAESNMVDALTAKNAEIESLVKSLDSWKKKAAASEEKLAALQEDMDGLKRNRELT 394

Query: 384 ETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADE 443
           ETR+IQALREELA+VERRAEEER AHNATKMAA+EREVELEHRA EAS ALARIQR AD+
Sbjct: 395 ETRVIQALREELATVERRAEEERIAHNATKMAAVEREVELEHRAVEASNALARIQRAADQ 454

Query: 444 RTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERA 503
            +++A ELE KVA+LEVECA+LQQELQ+MEAR +R QKK  EEANQ IQMQAWQ+EVERA
Sbjct: 455 SSSRAMELEHKVAVLEVECASLQQELQEMEARNRRAQKKPSEEANQVIQMQAWQEEVERA 514

Query: 504 RQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQ 563
           RQ QR+AE K+SSLEAE+QKMRVEMA MKRDAEHYSR+EH+ELEKRYRELTDLLY+KQTQ
Sbjct: 515 RQSQREAETKISSLEAELQKMRVEMAGMKRDAEHYSRQEHVELEKRYRELTDLLYHKQTQ 574

Query: 564 LETMASEKAAAEFQLEKEMNRLQEVQSEAERSRVSRRSWSSWEEDAEMKSLENNGRPLPL 623
           LE+MASEKAA EFQLEK + +  EVQ EAERSRV+RRS S+WEEDA++K+LE    PLPL
Sbjct: 575 LESMASEKAALEFQLEKSIKQFHEVQMEAERSRVARRSASAWEEDADIKALE----PLPL 630

Query: 624 HHRHIAGASVQLQKAAKLLDSGAVRATRFLWRYPIARIILLFYLVFVHLFLMYLLHRLQE 683
           HHRH+A A+ QLQKAAKLLDSGAVRATRFLWR+P+AR+ LLFYLVFVHLFLMYL+HRLQ 
Sbjct: 631 HHRHMATANQQLQKAAKLLDSGAVRATRFLWRHPVARVSLLFYLVFVHLFLMYLMHRLQ- 689

Query: 684 QADNFAAREVAESM-GLTTSNLP 705
              +FA+RE   +M GL  S+LP
Sbjct: 690 ---DFASREGPTAMGGLANSDLP 709

May be involved in maintaining Golgi structure and in intra-Golgi transport.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6GNT7|GOGA5_XENLA Golgin subfamily A member 5 OS=Xenopus laevis GN=golga5 PE=2 SV=1

 Score = 92.8 bits (229), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 124/437 (28%), Positives = 209/437 (47%), Gaps = 39/437 (8%)

Query: 253 LDEAQGLLKTTISTGQSKEARLARVCA----GLSSRLQEYKSENAQLEELLVAERELSRS 308
           L EA  LLK+   T +S +   +R+      G S   Q  ++   +L E   AE  L R 
Sbjct: 299 LQEADQLLKSRTETLESLQIEKSRILQDQSEGSSIHNQALQTMQERLRE---AESTLIRE 355

Query: 309 YEARIKQLEQELSVYKSEVTKVESNLAEA-LAAKNSEIETLVSSIDALKKQAALSEGNLA 367
            E+  KQ++ E +   S++     NLAEA + A+   +E    S D L++Q   S+  L 
Sbjct: 356 QES-YKQIQNEFATRLSKIEAERQNLAEAVILAEKKHMEEKRKS-DDLQQQLKTSKVGLD 413

Query: 368 SLQMNMESIMRNRELTETRMIQALREELASV-ERRAEEERAAHNATKMAAMEREVELEHR 426
           SL+  M    +      TR++Q+  + + S+ E    E   +H+A+ M       ELE  
Sbjct: 414 SLKQEMADYKQK----ATRILQSKEKLINSLKEGSGIEGLDSHSASTM-------ELEEM 462

Query: 427 AAEASMALARIQRIADERTAKAGELEQKVAMLEV-ECATLQQELQDMEARLKRGQKKSPE 485
             E  M    IQ++  +      EL Q V   +V E  + +++LQD+  +    Q+   E
Sbjct: 463 RHERDMQREEIQKLMGQIQQLKAEL-QDVETQQVSEAESAREQLQDVHEQFATQQRAKQE 521

Query: 486 -EANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHM 544
            EA    Q Q +Q   E   + +   + ++   E E+QK+R ++       +  S     
Sbjct: 522 LEAELERQKQEFQYIQEDLYKTKNTLQGRIRDREDEIQKLRNQLTN-----KALSSSSQT 576

Query: 545 ELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQSEAERSRVSRRSWSS 604
           ELE R  +LT+ L  KQT LE +++EK +  +QLE+  ++L+ VQ  +        S   
Sbjct: 577 ELENRLHQLTETLIQKQTMLENLSTEKNSLVYQLERLEHQLKNVQGSSLNGTSINMSVIE 636

Query: 605 WEEDAEMKS---LENNGRPLPLHHRHIAGASVQLQKAAKLLDSGAVRATRFLWRYPIARI 661
             E A M++   L ++  P      ++AG   +++KAA  +D  ++R   FL RYPIAR+
Sbjct: 637 SNEGARMRNVPVLFSDSDP------NVAGMYGRVRKAATSIDQFSIRLGIFLRRYPIARV 690

Query: 662 ILLFYLVFVHLFLMYLL 678
            ++ Y+  +HL++M +L
Sbjct: 691 FIIIYMALLHLWVMIVL 707

Involved in maintaining Golgi structure. Stimulates the formation of Golgi stacks and ribbons. Involved in intra-Golgi retrograde transport.

Xenopus laevis (taxid: 8355)

>sp|Q9QYE6|GOGA5_MOUSE Golgin subfamily A member 5 OS=Mus musculus GN=Golga5 PE=1 SV=2

 Score = 81.6 bits (200), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 105/395 (26%), Positives = 182/395 (46%), Gaps = 42/395 (10%)

Query: 296 EELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDAL 355
           E L  A+  L R  E+  KQ++ E +   +++     NLAEA+     +       +D L
Sbjct: 350 ERLHEADATLKREQES-YKQMQSEFAARLNKMEVDRQNLAEAVTLAERKYSEEKKKVDEL 408

Query: 356 KKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMA 415
           ++Q  L   +L S +  +    +      TR++Q+ +E+L +  +         ++T  +
Sbjct: 409 QQQVKLHRASLESAKQELVDYKQK----ATRILQS-KEKLINSLKEGSSFEGLESST-AS 462

Query: 416 AMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEAR 475
           +ME E EL H   E  M    IQ++  +      EL+   A    E  + +++LQD++ +
Sbjct: 463 SMELE-ELRH---EKEMQKEEIQKLMGQMHQLRSELQDMEAQQVSEAESAREQLQDLQDQ 518

Query: 476 LKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAE-----------NKLSSLEAEVQKM 524
           +          A Q    Q  + E+ER +Q  R  E           +++   E E+QK+
Sbjct: 519 I----------AKQRTSKQELETELERMKQEFRYMEEDLHRTKNTLQSRIKDREEEIQKL 568

Query: 525 RVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNR 584
           R ++       +  S     ELE R  +LT+ L  KQT LE++++EK +  FQLE    R
Sbjct: 569 RNQLTN-----KTLSNSSQSELESRLHQLTETLIQKQTMLESLSTEKNSLVFQLE----R 619

Query: 585 L-QEVQSEAERSRVSRRSWSSWEEDAEMKSLENNGRPLPLHHRHIAGASVQLQKAAKLLD 643
           L Q+V S +           S  +  E   L N          ++AG   +++KAA  +D
Sbjct: 620 LEQQVHSASSGPNSGSAINMSGVDSGEGTRLRNVPVLFNDTETNLAGMYGKVRKAASSID 679

Query: 644 SGAVRATRFLWRYPIARIILLFYLVFVHLFLMYLL 678
             ++R   FL RYPIAR+ ++ Y+  +HL++M +L
Sbjct: 680 QFSIRLGIFLRRYPIARVFVIIYMALLHLWVMIVL 714

Involved in maintaining Golgi structure. Stimulates the formation of Golgi stacks and ribbons. Involved in intra-Golgi retrograde transport.

Mus musculus (taxid: 10090)

>sp|Q8TBA6|GOGA5_HUMAN Golgin subfamily A member 5 OS=Homo sapiens GN=GOLGA5 PE=1 SV=3

 Score = 80.1 bits (196), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 105/395 (26%), Positives = 188/395 (47%), Gaps = 42/395 (10%)

Query: 296 EELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDAL 355
           E L  A+  L R  E+  KQ++ E +   ++V     NLAEA+     +       +D L
Sbjct: 352 ERLHEADATLKREQES-YKQMQSEFAARLNKVEMERQNLAEAITLAERKYSDEKKRVDEL 410

Query: 356 KKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMA 415
           ++Q  L + NL S +  +    +      TR++Q+  + + S++  +  E    +++  +
Sbjct: 411 QQQVKLYKLNLESSKQELIDYKQK----ATRILQSKEKLINSLKEGSGFE--GLDSSTAS 464

Query: 416 AMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEAR 475
           +ME E EL H   E  M    IQ++  +      EL+   A    E  + +++LQD+  +
Sbjct: 465 SMELE-ELRH---EKEMQREEIQKLMGQIHQLRSELQDMEAQQVNEAESAREQLQDLHDQ 520

Query: 476 LKRGQKKSPEEANQAIQMQAWQDEVERARQ-----------GQRDAENKLSSLEAEVQKM 524
           +  GQK S +E          + E+ER +Q            +   ++++   + E+QK+
Sbjct: 521 IA-GQKASKQE---------LETELERLKQEFHYIEEDLYRTKNTLQSRIKDRDEEIQKL 570

Query: 525 RVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNR 584
           R ++       +  S     ELE R  +LT+ L  KQT LE++++EK +  FQLE    R
Sbjct: 571 RNQLTN-----KTLSNSSQSELENRLHQLTETLIQKQTMLESLSTEKNSLVFQLE----R 621

Query: 585 L-QEVQSEAERSRVSRRSWSSWEEDAEMKSLENNGRPLPLHHRHIAGASVQLQKAAKLLD 643
           L Q++ S +  S        S  ++ E   L N          ++AG   +++KAA  +D
Sbjct: 622 LEQQMNSASGSSSNGSSINMSGIDNGEGTRLRNVPVLFNDTETNLAGMYGKVRKAASSID 681

Query: 644 SGAVRATRFLWRYPIARIILLFYLVFVHLFLMYLL 678
             ++R   FL RYPIAR+ ++ Y+  +HL++M +L
Sbjct: 682 QFSIRLGIFLRRYPIARVFVIIYMALLHLWVMIVL 716

Involved in maintaining Golgi structure. Stimulates the formation of Golgi stacks and ribbons. Involved in intra-Golgi retrograde transport.

Homo sapiens (taxid: 9606)

>sp|Q3ZU82|GOGA5_RAT Golgin subfamily A member 5 OS=Rattus norvegicus GN=Golga5 PE=1 SV=1

 Score = 79.3 bits (194), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 114/240 (47%), Gaps = 41/240 (17%)

Query: 465 LQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSL------- 517
           L+ ELQDMEA+    Q    E A +  Q+Q  QD++ + R  +++ E +L  +       
Sbjct: 489 LRSELQDMEAQ----QVSEAESARE--QLQDLQDQIAKQRASKQELETELDRMKQEFHYV 542

Query: 518 ------------------EAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYY 559
                             E E+QK+R ++       +  S     ELE R  +LT+ L  
Sbjct: 543 EEDLHRTKNTLQSRIKDREEEIQKLRNQLTN-----KTLSNSSQSELESRLHQLTETLIQ 597

Query: 560 KQTQLETMASEKAAAEFQLEKEMNRL-QEVQSEAERSRVSRRSWSSWEEDAEMKSLENNG 618
           KQT LE++++EK +  FQLE    RL Q++ S A           S  +  E   L N  
Sbjct: 598 KQTLLESLSTEKNSLVFQLE----RLEQQLHSAATGPSSGSSINMSGVDSGEGTRLRNVP 653

Query: 619 RPLPLHHRHIAGASVQLQKAAKLLDSGAVRATRFLWRYPIARIILLFYLVFVHLFLMYLL 678
                   ++AG   +++KAA  +D  ++R   FL RYPIAR+ ++ Y+  +HL++M +L
Sbjct: 654 VLFNDTETNLAGMYGKVRKAASSIDQFSIRLGIFLRRYPIARVFVIIYMALLHLWVMIVL 713

Involved in maintaining Golgi structure. Stimulates the formation of Golgi stacks and ribbons. Involved in intra-Golgi retrograde transport.

Rattus norvegicus (taxid: 10116)

>sp|B0F9L7|GOGC2_ARATH Golgin candidate 2 OS=Arabidopsis thaliana GN=GC2 PE=1 SV=1

 Score = 75.9 bits (185), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 82/286 (28%), Positives = 135/286 (47%), Gaps = 34/286 (11%)

Query: 402 AEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVE 461
           A+ E+  HN T+M  + R   LE   AE + +LA  Q+  + +  +   L+Q+V + E  
Sbjct: 379 ADLEKQKHNNTRMEVLTRLAGLEAENAELTRSLAAGQKKLETQIDQVAVLKQQVELKEST 438

Query: 462 CATLQQELQDMEAR---LK-----RGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENK 513
              L++   ++  R   LK     RG K   +     I +    D++ R        ++K
Sbjct: 439 LEELKRNTFNIGGRGTTLKQLDTSRGDKFEHQMLEAEISLLT--DKIGRL-------QDK 489

Query: 514 LSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAA 573
            + LEA+++ MR E+            E  +EL++R  +LTD L  KQ+Q+E ++SEKA 
Sbjct: 490 ATKLEADIEMMRKEL--------EEPTEVEIELKRRLNQLTDHLIQKQSQVEALSSEKAT 541

Query: 574 AEFQLEKEMNRLQEVQSEAERSRVSRRSWSSWEEDAEMKSLENNGRPL-PLHHRHIAGAS 632
             F++E  ++RL E     E   +S    SS  +D E    E +G    P     I    
Sbjct: 542 ILFRIEA-VSRLIE-----ENKGMSATEASS--QDLEAGDWELSGSKFKPAFQDKIRSGK 593

Query: 633 VQLQKAAKLLDSGAVRATRFLWRYPIARIILLFYLVFVHLFLMYLL 678
             L      L++  +  T FL R P A+I  + YLV +HL+++Y+L
Sbjct: 594 KHLGWLVMQLNAIFISGTVFLRRNPTAKIWAVVYLVCLHLWVLYIL 639

Golgi matrix protein playing a role in tethering of vesicles to Golgi membranes and in maintaining the overall structure of the Golgi apparatus.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7SXE4|GOGA5_DANRE Golgin subfamily A member 5 OS=Danio rerio GN=golga5 PE=2 SV=1

 Score = 73.2 bits (178), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 83/171 (48%), Gaps = 29/171 (16%)

Query: 518 EAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQ 577
           E E+QK+R ++       +  S     ELE R  +LT+ L  KQT LE + +EK +  FQ
Sbjct: 594 EDEIQKLRNQLTN-----KALSNSSQAELEGRLHQLTETLIQKQTMLEALGTEKNSLVFQ 648

Query: 578 LEK---EMNRLQEVQSEAERSRVSRRSWSSWEEDAEMKSLENNG-----RPLPLHHRHIA 629
           LE+   ++  LQ  Q+ A                  M ++E  G      P+        
Sbjct: 649 LERLEQQLKSLQGGQNSASH--------------INMAAMEGPGARQRNTPILFSDGDGP 694

Query: 630 GASV--QLQKAAKLLDSGAVRATRFLWRYPIARIILLFYLVFVHLFLMYLL 678
           G  V  +++KAA  +D  ++R   FL RYP+AR+ ++ Y+  +HL++M +L
Sbjct: 695 GTGVYGKVRKAASTIDRFSIRLGIFLRRYPMARVFVIIYMALLHLWVMIVL 745

Involved in maintaining Golgi structure. Stimulates the formation of Golgi stacks and ribbons. Involved in intra-Golgi retrograde transport.

Danio rerio (taxid: 7955)

>sp|Q8SZ63|GOGA5_DROME Golgin-84 OS=Drosophila melanogaster GN=Golgin84 PE=1 SV=2

 Score = 57.8 bits (138), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 75/140 (53%), Gaps = 14/140 (10%)

Query: 545 ELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQE----VQSEAERSRVSRR 600
           + E R + LT  L  +Q+ LE + SE+ A   Q EK   +LQ+    V+ E++R   SR 
Sbjct: 379 DYETRLKALTQSLVERQSLLERVTSERNALRLQHEKAQTQLQQNMHLVEMESQRGS-SRH 437

Query: 601 SWSSWEED--AEMKSLENNGRPLPLHHRHIAGASVQLQKAAKLLDSGAVRATRFLWRYPI 658
           +  +  +D  A+   L +   P P  +R     + + ++A +  DS  +R   FL RYP+
Sbjct: 438 TMLNSTDDVKAQFPLLMH---PSPFDNR----VARRFKRALRQADSMGIRVGTFLRRYPM 490

Query: 659 ARIILLFYLVFVHLFLMYLL 678
            R+ ++ Y+  +HL++M++L
Sbjct: 491 MRVSVIVYVALLHLWVMFVL 510

May be involved in maintaining Golgi structure and in intra-Golgi transport.

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	705
255546349	717	Golgin-84, putative [Ricinus communis] g	0.992	0.976	0.714	0.0
297738766	712	unnamed protein product [Vitis vinifera]	0.992	0.983	0.701	0.0
356560629	702	PREDICTED: golgin candidate 1-like [Glyc	0.977	0.981	0.674	0.0
356497595	703	PREDICTED: golgin candidate 1-like [Glyc	0.981	0.984	0.680	0.0
225445112	694	PREDICTED: golgin candidate 1-like [Viti	0.970	0.985	0.688	0.0
449466268	709	PREDICTED: golgin candidate 1-like [Cucu	0.987	0.981	0.649	0.0
334184316	710	golgin candidate 1 [Arabidopsis thaliana	0.954	0.947	0.613	0.0
164708702	710	putative golgin-84-like protein [Arabido	0.954	0.947	0.612	0.0
79557632	707	golgin candidate 1 [Arabidopsis thaliana	0.950	0.947	0.610	0.0
297832160	746	hypothetical protein ARALYDRAFT_899882 [	0.946	0.894	0.590	0.0

>gi|255546349|ref|XP_002514234.1| Golgin-84, putative [Ricinus communis] gi|223546690|gb|EEF48188.1| Golgin-84, putative [Ricinus communis]

 Score =  922 bits (2383), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 516/722 (71%), Positives = 582/722 (80%), Gaps = 22/722 (3%)

Query: 1   MASWLKAAEDLFEVVDRRAKLVVNELADEQSDFQTPASNGQGSQAKKIKSRIKAQRRHSA 60
           MASWLKAAEDLFEVVDRRAKLVV+ELADE SD Q+PASNGQGSQ K  + + KAQ+R S 
Sbjct: 1   MASWLKAAEDLFEVVDRRAKLVVSELADEHSDSQSPASNGQGSQPKTARGKKKAQKRLSK 60

Query: 61  DESLKINDTAREQANTQASPVDVTPNKDTATLAVEKETITTGKT--QKNGEQQQTNERDA 118
            ES K +    E   TQ S +++  ++D A L+VE +T  T K+  Q   EQQQ  ++DA
Sbjct: 61  IESDKASSAKAEFITTQTSQLEME-SEDRAALSVEHDTAPTSKSILQVVAEQQQDTDKDA 119

Query: 119 PSIPLTEQ-SKDMSKHDADRVEIP--ETFTDLDTATPNGEILNENDSDVHLNHPPSPLPP 175
            SI   E+ + ++ KHD D VE+P      D  T+T NGEILNE   D  L HPPSPLP 
Sbjct: 120 SSIKSPERLANEVVKHDTDNVEVPVAAADADAKTSTSNGEILNEKAPDGFLEHPPSPLPA 179

Query: 176 KEMGIVNEDRID---DAGQITKSADADAPLKID---SKIQAVDPPVNSESSLKDADVKVE 229
           KE+ ++NED  D   DAG   K +DA+ PL+ D   S+   +D P+N E  LKDAD+K  
Sbjct: 180 KEIEVLNEDHQDHPIDAGVNIKLSDAEVPLETDQERSQSANIDTPINDEIVLKDADLKAN 239

Query: 230 TLSNKRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYK 289
            + N++     KAD+ P K QDQL+EAQGLLKT ISTGQSKEARLARVCAGLS+RLQEYK
Sbjct: 240 PVVNQQDHHQQKADNSPKKIQDQLEEAQGLLKTAISTGQSKEARLARVCAGLSTRLQEYK 299

Query: 290 SENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLV 349
           SENAQLEELL+AERELS+S E RIKQL+Q+LS  KSEVT+VESN+ EALAAKNSEIE LV
Sbjct: 300 SENAQLEELLIAERELSKSLETRIKQLQQDLSRSKSEVTRVESNMGEALAAKNSEIEALV 359

Query: 350 SSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAH 409
           +SID LKKQAALSEGNLASLQ NMESIMRNRELTETRM+QALREEL+S ERRAEEERAAH
Sbjct: 360 NSIDVLKKQAALSEGNLASLQANMESIMRNRELTETRMMQALREELSSAERRAEEERAAH 419

Query: 410 NATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQEL 469
           NATKMAAMEREVELEHRA EAS ALARIQRIADERTAKA ELEQKVA+LEVECA+L QEL
Sbjct: 420 NATKMAAMEREVELEHRAVEASTALARIQRIADERTAKAAELEQKVALLEVECASLNQEL 479

Query: 470 QDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMA 529
           QDME R++RGQKKSPEEANQ IQMQAWQ+EVERARQGQRDAENKLSS EAE+QKMRVEMA
Sbjct: 480 QDMETRVRRGQKKSPEEANQVIQMQAWQEEVERARQGQRDAENKLSSTEAELQKMRVEMA 539

Query: 530 AMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEV- 588
           AMKRDAEHYSR+EHMELEKRYRELTDLLYYKQTQLE MASEKAAAEFQLEKE+ R+++  
Sbjct: 540 AMKRDAEHYSRQEHMELEKRYRELTDLLYYKQTQLEAMASEKAAAEFQLEKEVKRIKKXX 599

Query: 589 ----QSEAE-RSRVSRRSWSSWEEDAEMKSLENNGRPLPLHHRHIAGASVQLQKAAKLLD 643
               Q EAE      R S SSWEED+EMK+LE    PLPLHHRH+A AS+QLQKAAKLLD
Sbjct: 600 IDVKQIEAERSRVSRRASSSSWEEDSEMKALE----PLPLHHRHMAVASMQLQKAAKLLD 655

Query: 644 SGAVRATRFLWRYPIARIILLFYLVFVHLFLMYLLHRLQEQADNFAAREVAESMGLTTSN 703
           SGA RATRFLWRYP AR+ILLFYLVFVHLFLMYLLHRLQEQAD+ +AREVA+SMGL T  
Sbjct: 656 SGAARATRFLWRYPTARLILLFYLVFVHLFLMYLLHRLQEQADDLSAREVAQSMGLATPT 715

Query: 704 LP 705
           LP
Sbjct: 716 LP 717

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738766|emb|CBI28011.3| unnamed protein product [Vitis vinifera]

 Score =  888 bits (2294), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 503/717 (70%), Positives = 574/717 (80%), Gaps = 17/717 (2%)

Query: 1   MASWLKAAEDLFEVVDRRAKLVVNELADEQSDFQTPASNGQGSQAKKIKSRIK--AQRRH 58
           MASWLKAAEDLFEVVDRRAKLVV+EL+DEQ D Q P SNGQGSQ KK K + K  AQ+R 
Sbjct: 1   MASWLKAAEDLFEVVDRRAKLVVSELSDEQHDGQAPDSNGQGSQTKKTKPKSKSKAQKRL 60

Query: 59  SADESLKINDTAREQANTQASPVDVTPNKDTATLAVEKETITTGKT--QKNGEQQQTNER 116
           S +E  KINDTA+ Q  TQ +  D+ P+KD AT + E +  T+  +  Q N EQ Q   +
Sbjct: 61  STNEPSKINDTAQVQTGTQPAVSDIAPDKDRATRSFENDETTSSNSTAQANNEQLQNGNK 120

Query: 117 DAP--SIPLTEQ-SKDMSKHDADRVEIPETFTDLDT--ATPNGEILNENDSDVHLNHPPS 171
           DA    IP  E    DM K +AD  E+  T TD++   +T NGE++N+  +D +   P S
Sbjct: 121 DASVFGIPSLETLPNDMVKPEADLPEVAPTVTDVEAIASTSNGELVNDK-ADANEGQPTS 179

Query: 172 PLPPKEMGIVNEDRIDDAGQITKSADADAPLKID---SKIQAVDPPVNSESSLKDADVKV 228
             P   + IV+ED   +AGQ  KS DAD P +ID   S+   VD P +S++   D+++KV
Sbjct: 180 FSPTAGVEIVSEDHPVEAGQNIKSRDADVPSQIDQEGSQSVNVDAPSSSDTQSNDSEIKV 239

Query: 229 ETLSNKRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEY 288
           ET+SN++KQQ  K D  P K QDQLDEAQGLLKT +STGQSKEARL RVCAGL +RLQE 
Sbjct: 240 ETISNQKKQQEHKGDASPMKLQDQLDEAQGLLKTAVSTGQSKEARLTRVCAGLLTRLQEC 299

Query: 289 KSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETL 348
           KSENAQLEELL AE+ELS SYEARIKQL+Q+LS  K EV+KVES + EALAAKNSEIE L
Sbjct: 300 KSENAQLEELLTAEKELSNSYEARIKQLQQDLSASKIEVSKVESIMVEALAAKNSEIEAL 359

Query: 349 VSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAA 408
           V+S+DALKKQAA SEGNLAS+Q NMESIMRNRELTETRM+QALREELAS ERRAEEERAA
Sbjct: 360 VNSMDALKKQAAFSEGNLASMQANMESIMRNRELTETRMMQALREELASAERRAEEERAA 419

Query: 409 HNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQE 468
           H+ATKMAAMEREVELEH+A EAS ALARIQR+ADERTAKA E EQKVA+LEVECATL QE
Sbjct: 420 HHATKMAAMEREVELEHQAVEASTALARIQRVADERTAKAAEFEQKVALLEVECATLNQE 479

Query: 469 LQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEM 528
           L DMEAR +RGQKKSPEEANQ IQMQAWQ+EVERARQGQRDAE KLSS+EAE+QKMRVEM
Sbjct: 480 LHDMEARARRGQKKSPEEANQVIQMQAWQEEVERARQGQRDAEAKLSSMEAELQKMRVEM 539

Query: 529 AAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEV 588
           AAMKRDAEHYSR+EHMELEKRYRELTDLLY KQTQLE MASEKAAA FQLEKE+ RL+E 
Sbjct: 540 AAMKRDAEHYSRQEHMELEKRYRELTDLLYNKQTQLEAMASEKAAAGFQLEKEVKRLKEA 599

Query: 589 QSEAERSRVSRRSWSSWEEDAEMKSLENNGRPLPLHHRHIAGASVQLQKAAKLLDSGAVR 648
           Q EAERSR SRR  +SWE+D ++K+LE    PLPLHHRH+A AS+QLQKAAKLLDSGAVR
Sbjct: 600 QVEAERSRTSRRGSASWEDDTDIKALE----PLPLHHRHMAAASIQLQKAAKLLDSGAVR 655

Query: 649 ATRFLWRYPIARIILLFYLVFVHLFLMYLLHRLQEQADNFAAREVAESMGLTTSNLP 705
           ATRFLWRYP AR++LLFYLVFVHLFLMYLLH LQEQAD  A+REVA+SMGL T  LP
Sbjct: 656 ATRFLWRYPTARLLLLFYLVFVHLFLMYLLHHLQEQADELASREVAQSMGLATPTLP 712

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356560629|ref|XP_003548593.1| PREDICTED: golgin candidate 1-like [Glycine max]

 Score =  884 bits (2285), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 484/718 (67%), Positives = 566/718 (78%), Gaps = 29/718 (4%)

Query: 1   MASWLKAAEDLFEVVDRRAKLVVNELADEQSDFQTPASNGQGSQAKKIKSRIKAQRRHSA 60
           M SWLKAAE LFEVVDRRAK V ++L++EQ D ++PASNGQGSQ K+ KS+ KAQ+  S 
Sbjct: 1   MDSWLKAAEGLFEVVDRRAKAVASDLSEEQGDSKSPASNGQGSQGKRTKSKPKAQKALS- 59

Query: 61  DESLKINDTAREQANTQASPVDVTPNKDTATLAVEKETITTGKTQKNGEQQQTNERDAPS 120
           D    I+DT  E++ + ++PVD+  + D     V+ E   +  T  N + ++    DA S
Sbjct: 60  DSPTIISDTTHEKSGSPSAPVDIATSIDK----VDPEIDVSASTSTN-QPKEPQPSDATS 114

Query: 121 IPLTEQS------KDMSKHDADRVEIPETFTDLDTAT--PNGEILNENDSDV-HLNHPPS 171
            PL   S       D+ KHD D  E      D+  AT   NG+ + E+ SD+  ++ PP+
Sbjct: 115 -PLLGSSLSKILGDDVGKHDTDDAEALVNDADIGVATIAGNGDPVQESASDICEMDPPPA 173

Query: 172 PLPPKEMGI-VNEDRIDDAGQITKSADADAPLKID---SKIQAVDPPVNSESSLKDADVK 227
           P      GI  + D     GQI KS D DA   +D   S   A D   N++  LKD+DVK
Sbjct: 174 P-----KGIEGSSDEPTSTGQIIKSRDLDASKNVDIEKSDSVASDTAPNNDPILKDSDVK 228

Query: 228 VETLSNKRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQE 287
           VE++ +++ Q+  KAD  P K QDQLDEAQGLLKTT STGQSKEARLARVCAGLSSRLQE
Sbjct: 229 VESVVDEKSQEDHKADISPEKVQDQLDEAQGLLKTTKSTGQSKEARLARVCAGLSSRLQE 288

Query: 288 YKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIET 347
           YKSENAQLEELL +ERELS+SYEA IKQL+++LS  K EVT+VESN+ EALAAKN+EIE 
Sbjct: 289 YKSENAQLEELLTSERELSKSYEASIKQLQKDLSESKREVTRVESNMVEALAAKNAEIEA 348

Query: 348 LVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERA 407
           L+SS+DA+K+QAALSEGNLASLQ +MES+MRNREL+ETRM+QALREELAS ERRAEEER 
Sbjct: 349 LLSSMDAVKRQAALSEGNLASLQASMESMMRNRELSETRMMQALREELASAERRAEEERV 408

Query: 408 AHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQ 467
           AHNATKMAAMEREVELEHRA E+S ALARIQR+ADERTAKA ELEQKVA+LEVECA+L Q
Sbjct: 409 AHNATKMAAMEREVELEHRAVESSTALARIQRVADERTAKATELEQKVALLEVECASLNQ 468

Query: 468 ELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVE 527
           ELQDMEAR++R QKK+PEEANQ IQ QAWQ+E+ERARQGQR+AENKLSSLEAE+QKMRVE
Sbjct: 469 ELQDMEARVRREQKKAPEEANQVIQKQAWQEELERARQGQREAENKLSSLEAEMQKMRVE 528

Query: 528 MAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQE 587
           MAAMKRDAEHYSR+EHMELEKRYRELTDLLYYKQTQLETM SEKAA EFQLEKE+ RLQE
Sbjct: 529 MAAMKRDAEHYSRQEHMELEKRYRELTDLLYYKQTQLETMVSEKAATEFQLEKEIKRLQE 588

Query: 588 VQSEAERSRVSRRSWSSWEEDAEMKSLENNGRPLPLHHRHIAGASVQLQKAAKLLDSGAV 647
            ++EAERSRVSRR+ SSWE++ E+KSLE    PLP+HHRH+ GAS+QLQKA KLLDSGAV
Sbjct: 589 AKAEAERSRVSRRASSSWEDETEIKSLE----PLPMHHRHLVGASIQLQKAVKLLDSGAV 644

Query: 648 RATRFLWRYPIARIILLFYLVFVHLFLMYLLHRLQEQADNFAAREVAESMGLTTSNLP 705
           RATRFLWRYP AR+IL FYLVFVHLFLMYLLHRLQ QAD  AAREVAESMGL+  NLP
Sbjct: 645 RATRFLWRYPTARVILFFYLVFVHLFLMYLLHRLQAQADTLAAREVAESMGLSNQNLP 702

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497595|ref|XP_003517645.1| PREDICTED: golgin candidate 1-like [Glycine max]

 Score =  875 bits (2260), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 487/716 (68%), Positives = 569/716 (79%), Gaps = 24/716 (3%)

Query: 1   MASWLKAAEDLFEVVDRRAKLVVNELADEQSDFQTPASNGQGSQAKKIKSRIKAQRRHSA 60
           M SWLKAAE LFEVVDRRAK V ++L++EQ D ++PASNGQGSQ KK KS+ KAQ+  S 
Sbjct: 1   MDSWLKAAEGLFEVVDRRAKAVASDLSEEQGDLKSPASNGQGSQGKKTKSKPKAQKGLS- 59

Query: 61  DESLKINDTAREQANTQASPVDVTPNKDTATLAVEKETITTGKTQKNGEQQQTNERDAPS 120
           D S  I+DT +E++ + ++P D+  + D     V+ E I    +    + ++    DA S
Sbjct: 60  DSSTTISDTTQEKSGSPSAPADIATSIDK----VDPEIIDGSASTSTNQPKEPRPSDATS 115

Query: 121 IPLTEQS------KDMSKHDADRVEIPETFTDLDTAT--PNGEILNENDSDVHLNHPPSP 172
            PL   S       D+ KHD D VE      D+  AT   NG+ + E+ SDV    PP P
Sbjct: 116 -PLLGSSLSKMLGDDVGKHDPDDVETLVNDADIGVATIAANGDTVQESASDVCEMDPP-P 173

Query: 173 LPPKEMGIVNEDRIDDAGQITKSADADAPLKID---SKIQAVDPPVNSESSLKDADVKVE 229
            P +  G  +E      GQI KS D DA   +D   S+  A D   N+++ LKD+DVK+E
Sbjct: 174 APKEIEGPSDEPT--STGQIIKSRDLDASKNVDIEKSESVASDTAPNNDTILKDSDVKLE 231

Query: 230 TLSNKRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYK 289
           ++ +++ Q+  K D  P K QDQLDEAQGLLKTT STGQSKEARLARVCAGLSSRLQEYK
Sbjct: 232 SVVDEKSQEDHKTDISPKKVQDQLDEAQGLLKTTKSTGQSKEARLARVCAGLSSRLQEYK 291

Query: 290 SENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLV 349
           SENAQLEELL +ERELS+SYEA IKQL+++LS  K EVT+VESN+ EALAAKN+EIE L+
Sbjct: 292 SENAQLEELLTSERELSKSYEASIKQLQKDLSESKREVTRVESNMVEALAAKNAEIEALL 351

Query: 350 SSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAH 409
           SS+DA+K+QAALSEGNLASLQ +MES+MRNREL+ETRM+QALREELAS ERRAEEERAAH
Sbjct: 352 SSMDAVKRQAALSEGNLASLQASMESMMRNRELSETRMMQALREELASAERRAEEERAAH 411

Query: 410 NATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQEL 469
           NATKMAAMEREVELEHRA E+S ALARIQR+ADERTAKA ELEQKVA+LEVECA+L QEL
Sbjct: 412 NATKMAAMEREVELEHRAVESSTALARIQRVADERTAKATELEQKVALLEVECASLNQEL 471

Query: 470 QDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMA 529
           QDMEAR++R QKK+PEEANQ IQMQAWQ+E+ERARQGQR+AENKLSSLEAE+QKMRVEMA
Sbjct: 472 QDMEARVRREQKKAPEEANQVIQMQAWQEELERARQGQREAENKLSSLEAEMQKMRVEMA 531

Query: 530 AMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQ 589
           AMKRDAEHYSR+EHMELEKRYRELTDLLYYKQTQLETM SEKAAAEFQLEKE+ RLQE +
Sbjct: 532 AMKRDAEHYSRQEHMELEKRYRELTDLLYYKQTQLETMVSEKAAAEFQLEKEIKRLQEAK 591

Query: 590 SEAERSRVSRRSWSSWEEDAEMKSLENNGRPLPLHHRHIAGASVQLQKAAKLLDSGAVRA 649
           +EAERSRVSRR+ SSWE++ E+KSLE    PLPLHHRH+ GAS+QLQKA KLLDSGAVRA
Sbjct: 592 AEAERSRVSRRASSSWEDETEIKSLE----PLPLHHRHLVGASIQLQKAVKLLDSGAVRA 647

Query: 650 TRFLWRYPIARIILLFYLVFVHLFLMYLLHRLQEQADNFAAREVAESMGLTTSNLP 705
           TRFLW+YP AR+IL FYLVFVHLFLMYLLHRLQ QAD  AAREVAESMGL+  NLP
Sbjct: 648 TRFLWQYPTARVILFFYLVFVHLFLMYLLHRLQVQADTLAAREVAESMGLSNQNLP 703

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225445112|ref|XP_002280503.1| PREDICTED: golgin candidate 1-like [Vitis vinifera]

 Score =  863 bits (2229), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 492/715 (68%), Positives = 562/715 (78%), Gaps = 31/715 (4%)

Query: 1   MASWLKAAEDLFEVVDRRAKLVVNELADEQSDFQTPASNGQGSQAKKIKSRIKAQRRHSA 60
           MASWLKAAEDLFEVVDRRAKLVV+EL+DEQ D Q P SNGQGSQ KK K + K++     
Sbjct: 1   MASWLKAAEDLFEVVDRRAKLVVSELSDEQHDGQAPDSNGQGSQTKKTKPKSKSKV---- 56

Query: 61  DESLKINDTAREQANTQASPVDVTPNKDTATLAVEKETITTGKT--QKNGEQQQTNERDA 118
                       Q  TQ +  D+ P+KD AT + E +  T+  +  Q N EQ Q   +DA
Sbjct: 57  ------------QTGTQPAVSDIAPDKDRATRSFENDETTSSNSTAQANNEQLQNGNKDA 104

Query: 119 P--SIPLTEQ-SKDMSKHDADRVEIPETFTDLDT--ATPNGEILNENDSDVHLNHPPSPL 173
               IP  E    DM K +AD  E+  T TD++   +T NGE++N+  +D +   P S  
Sbjct: 105 SVFGIPSLETLPNDMVKPEADLPEVAPTVTDVEAIASTSNGELVNDK-ADANEGQPTSFS 163

Query: 174 PPKEMGIVNEDRIDDAGQITKSADADAPLKID---SKIQAVDPPVNSESSLKDADVKVET 230
           P   + IV+ED   +AGQ  KS DAD P +ID   S+   VD P +S++   D+++KVET
Sbjct: 164 PTAGVEIVSEDHPVEAGQNIKSRDADVPSQIDQEGSQSVNVDAPSSSDTQSNDSEIKVET 223

Query: 231 LSNKRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKS 290
           +SN++KQQ  K D  P K QDQLDEAQGLLKT +STGQSKEARL RVCAGL +RLQE KS
Sbjct: 224 ISNQKKQQEHKGDASPMKLQDQLDEAQGLLKTAVSTGQSKEARLTRVCAGLLTRLQECKS 283

Query: 291 ENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVS 350
           ENAQLEELL AE+ELS SYEARIKQL+Q+LS  K EV+KVES + EALAAKNSEIE LV+
Sbjct: 284 ENAQLEELLTAEKELSNSYEARIKQLQQDLSASKIEVSKVESIMVEALAAKNSEIEALVN 343

Query: 351 SIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHN 410
           S+DALKKQAA SEGNLAS+Q NMESIMRNRELTETRM+QALREELAS ERRAEEERAAH+
Sbjct: 344 SMDALKKQAAFSEGNLASMQANMESIMRNRELTETRMMQALREELASAERRAEEERAAHH 403

Query: 411 ATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQ 470
           ATKMAAMEREVELEH+A EAS ALARIQR+ADERTAKA E EQKVA+LEVECATL QEL 
Sbjct: 404 ATKMAAMEREVELEHQAVEASTALARIQRVADERTAKAAEFEQKVALLEVECATLNQELH 463

Query: 471 DMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAA 530
           DMEAR +RGQKKSPEEANQ IQMQAWQ+EVERARQGQRDAE KLSS+EAE+QKMRVEMAA
Sbjct: 464 DMEARARRGQKKSPEEANQVIQMQAWQEEVERARQGQRDAEAKLSSMEAELQKMRVEMAA 523

Query: 531 MKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQS 590
           MKRDAEHYSR+EHMELEKRYRELTDLLY KQTQLE MASEKAAA FQLEKE+ RL+E Q 
Sbjct: 524 MKRDAEHYSRQEHMELEKRYRELTDLLYNKQTQLEAMASEKAAAGFQLEKEVKRLKEAQV 583

Query: 591 EAERSRVSRRSWSSWEEDAEMKSLENNGRPLPLHHRHIAGASVQLQKAAKLLDSGAVRAT 650
           EAERSR SRR  +SWE+D ++K+LE    PLPLHHRH+A AS+QLQKAAKLLDSGAVRAT
Sbjct: 584 EAERSRTSRRGSASWEDDTDIKALE----PLPLHHRHMAAASIQLQKAAKLLDSGAVRAT 639

Query: 651 RFLWRYPIARIILLFYLVFVHLFLMYLLHRLQEQADNFAAREVAESMGLTTSNLP 705
           RFLWRYP AR++LLFYLVFVHLFLMYLLH LQEQAD  A+REVA+SMGL T  LP
Sbjct: 640 RFLWRYPTARLLLLFYLVFVHLFLMYLLHHLQEQADELASREVAQSMGLATPTLP 694

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449466268|ref|XP_004150848.1| PREDICTED: golgin candidate 1-like [Cucumis sativus] gi|449488127|ref|XP_004157946.1| PREDICTED: golgin candidate 1-like [Cucumis sativus]

 Score =  825 bits (2130), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 466/718 (64%), Positives = 546/718 (76%), Gaps = 22/718 (3%)

Query: 1   MASWLKAAEDLFEVVDRRAKLVVNELADEQSDFQTPASNGQGSQAKKIKSRIKAQRRHSA 60
           MASW KAAE LFEVVDR+AKLVV+EL++EQS+ QT ASNGQGSQ KK K + K +    +
Sbjct: 1   MASWFKAAEGLFEVVDRKAKLVVSELSEEQSNAQTAASNGQGSQTKKTKPKKKKKVL--S 58

Query: 61  DESLKINDTAREQANTQASPVDV--TPNKDTATLAVEKETITTGK--TQKNGEQQQTNER 116
           +E    + T  EQ++T AS  DV  +P K     + E + + + K  TQ N  +   N+ 
Sbjct: 59  NELPTASATPEEQSSTLASKADVVLSPGKHGIVSSTEDDRMISDKSPTQVNERKPDDNDN 118

Query: 117 DAP--SIPLTEQ-SKDMSKHDADRVEIPETFTDLDTATPNG--EILNENDSDVHLNHPPS 171
             P   IP T+    +  K   D ++      D++   P    E+ N N SDVH  +  S
Sbjct: 119 TIPVLEIPSTDGLVVEAGKQIPDGMDTSAAVADVEVIAPTSKTELTNVNASDVHEENLLS 178

Query: 172 PLPPKEMGIVNEDRIDDAGQITKSADADAPLKIDSKIQAVDPP---VNSESSLKDADVKV 228
             P KE   +N++  D+  Q  K    +   KID ++    P     N ES  KD   KV
Sbjct: 179 T-PNKEAVEINKEHQDEE-QSNKLGSVETISKIDREMSESAPTEFQNNGESQTKDDSNKV 236

Query: 229 ETLSNKRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEY 288
           ++  N++ Q+   AD    K QDQL+EAQ LLKT+ STGQSKEARL +VCAGLSSRLQE+
Sbjct: 237 QSPVNQKHQEN-TADKSSIKVQDQLEEAQMLLKTSNSTGQSKEARLVKVCAGLSSRLQEF 295

Query: 289 KSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETL 348
           KSENAQLEELL+AERELSRSY+ARIKQLE+ L   K+EV++VES++AEALAAKN+EI  L
Sbjct: 296 KSENAQLEELLIAERELSRSYDARIKQLEENLLESKNEVSRVESSMAEALAAKNTEIGAL 355

Query: 349 VSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAA 408
           + S+DALKKQAALSEG+LAS+Q NMES+MRNRELTETRM+QALREELAS ERRAEEER+A
Sbjct: 356 IGSMDALKKQAALSEGSLASMQANMESVMRNRELTETRMMQALREELASAERRAEEERSA 415

Query: 409 HNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQE 468
           HNATKMA+MERE+ELEHRA EA+ ALARIQR+ADERT+KA ELEQKVA+LEVEC++L QE
Sbjct: 416 HNATKMASMEREMELEHRAMEAASALARIQRVADERTSKATELEQKVALLEVECSSLNQE 475

Query: 469 LQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEM 528
           LQD+EAR +RGQKKSP+EANQ IQMQAWQ+EVERARQGQRDAE KLSS+EAE+QKMRVEM
Sbjct: 476 LQDLEARARRGQKKSPDEANQLIQMQAWQEEVERARQGQRDAELKLSSMEAELQKMRVEM 535

Query: 529 AAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEV 588
           AAMKRDAEHYSR+EHMELEKRYRELTDLLYYKQTQLE MASEKAAAEFQLEKE+NR QE 
Sbjct: 536 AAMKRDAEHYSRQEHMELEKRYRELTDLLYYKQTQLEAMASEKAAAEFQLEKEINRAQEA 595

Query: 589 QSEAE-RSRVSRRSWSSWEEDAEMKSLENNGRPLPLHHRHIAGASVQLQKAAKLLDSGAV 647
           Q E E      R S +SWEEDAEMKSLE    PLPLHHR++ G SVQLQKAAKLLDSGAV
Sbjct: 596 QVEVERSRASRRASSASWEEDAEMKSLE----PLPLHHRYMVGTSVQLQKAAKLLDSGAV 651

Query: 648 RATRFLWRYPIARIILLFYLVFVHLFLMYLLHRLQEQADNFAAREVAESMGLTTSNLP 705
           RATRFLWRYP AR+ILLFYLVFVHLF+MYLLHRLQ QAD   AREVAESMGLT  NLP
Sbjct: 652 RATRFLWRYPTARLILLFYLVFVHLFMMYLLHRLQAQADTITAREVAESMGLTNPNLP 709

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334184316|ref|NP_001189556.1| golgin candidate 1 [Arabidopsis thaliana] gi|330251854|gb|AEC06948.1| golgin candidate 1 [Arabidopsis thaliana]

 Score =  791 bits (2044), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/722 (61%), Positives = 536/722 (74%), Gaps = 49/722 (6%)

Query: 1   MASWLKAAEDLFEVVDRRAKLVVNELADEQSDFQTPASNGQGSQAKKIKSRIKAQRRHSA 60
           MASWLKAAEDLFEVVDRRAK VV +L++EQ+D Q PAS  +GSQ K+  S+ KA+++   
Sbjct: 1   MASWLKAAEDLFEVVDRRAKSVVEDLSEEQNDLQLPASGRKGSQGKRTSSKKKARQKLVK 60

Query: 61  DESLKINDTAREQANTQASPVDVTPNKDTATLAVEKETITTGKTQKNGEQQQTNE--RDA 118
           +ES    D++ +Q+    S  +V P+K + +     ET ++G      E   T+   +  
Sbjct: 61  EESSNKRDSSGDQSGPGVSQSEVPPSKSSVST---DETSSSGPVLLTREIHPTDADVQSV 117

Query: 119 PSIPLTEQSKDMSKHDADRVEIPETFTDLD---TATPNGEILNENDSDVHLNHPPSP-LP 174
            S+PL+      +K D   V   E+  D D   +   +G+I   NDS V     PSP LP
Sbjct: 118 LSLPLSVAD---TKSDDAAVVAQESIVDGDRSESKHADGDI--PNDSLVQ----PSPSLP 168

Query: 175 PKEMGIVNEDRIDDAGQITKSADADAPLK-----IDSKIQAVDPPVNSESSLKDA--DVK 227
            KE+ +V  + + DA +     + D   K     +DS + A  P VN  +  +    +VK
Sbjct: 169 DKEIEVVVSENLMDAPKNGTQRELDDSSKRDVENLDSVVHA--PSVNEGNVAQSTGDEVK 226

Query: 228 VETL---------------SNKRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEA 272
           V T                +N +++Q  +AD    K QDQL+EAQGLLK T+STGQSKEA
Sbjct: 227 VGTSINLEKEQEPKVPVTSTNLKREQDRRADTTSMKIQDQLEEAQGLLKATVSTGQSKEA 286

Query: 273 RLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVES 332
           RLARVCAGLSSRLQE K+ENAQLEELL AE+EL++SYEA I+ L+++LS  KSEVTKVES
Sbjct: 287 RLARVCAGLSSRLQEIKAENAQLEELLTAEQELTKSYEASIRHLQKDLSAAKSEVTKVES 346

Query: 333 NLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALR 392
           ++ EALAAKNSEIETLVS++DALK QAAL+EG L+SLQ +MESIMRNREL ETRM+QALR
Sbjct: 347 SMVEALAAKNSEIETLVSAMDALKNQAALNEGKLSSLQGDMESIMRNRELAETRMMQALR 406

Query: 393 EELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELE 452
           EELA+ ERRAEEER+AHNATKMAAMERE ELEHRA +AS AL RIQRIADERTAK  + E
Sbjct: 407 EELATTERRAEEERSAHNATKMAAMERERELEHRAVDASTALVRIQRIADERTAKVADFE 466

Query: 453 QKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAEN 512
           QKVA+LE EC +L QELQDME R +RGQKK+P+EANQ IQ+QAWQDEV+RARQGQRDAE 
Sbjct: 467 QKVALLEAECTSLNQELQDMEVRARRGQKKAPDEANQVIQIQAWQDEVDRARQGQRDAEE 526

Query: 513 KLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKA 572
           KLS +EAE+QK+RVEMAAMKRDAEHYSR+EH ELEKRYRELTDLLYYKQTQLETMASEKA
Sbjct: 527 KLSLMEAEMQKLRVEMAAMKRDAEHYSRQEHTELEKRYRELTDLLYYKQTQLETMASEKA 586

Query: 573 AAEFQLEKEMNRLQEVQSEAERSRVSRRSWSSWEEDAEMKSLENNGRPLPLHHRHIAGAS 632
           AAEFQLEKE+ RL E Q E E+SRVSRR+ ++WEED+E+K+LE    PLPL+HRH+A AS
Sbjct: 587 AAEFQLEKEVKRLHEAQVEVEKSRVSRRASATWEEDSEIKTLE----PLPLYHRHMATAS 642

Query: 633 VQLQKAAKLLDSGAVRATRFLWRYPIARIILLFYLVFVHLFLMYLLHRLQEQADNFAARE 692
            QLQ A KLLDSGAVRATRFLWRYPIAR+ LLFYLVFVHLFLMYL+HRLQEQA+   A+E
Sbjct: 643 TQLQNAVKLLDSGAVRATRFLWRYPIARMFLLFYLVFVHLFLMYLIHRLQEQAE---AQE 699

Query: 693 VA 694
           VA
Sbjct: 700 VA 701

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|164708702|gb|ABY67248.1| putative golgin-84-like protein [Arabidopsis thaliana]

 Score =  789 bits (2038), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/722 (61%), Positives = 535/722 (74%), Gaps = 49/722 (6%)

Query: 1   MASWLKAAEDLFEVVDRRAKLVVNELADEQSDFQTPASNGQGSQAKKIKSRIKAQRRHSA 60
           MASWLKAAEDLFEVVDRRAK VV +L++EQ+D Q PAS  +GSQ K+  S+ KA+++   
Sbjct: 1   MASWLKAAEDLFEVVDRRAKSVVEDLSEEQNDLQLPASGRKGSQGKRTSSKKKARQKLVK 60

Query: 61  DESLKINDTAREQANTQASPVDVTPNKDTATLAVEKETITTGKTQKNGEQQQTNE--RDA 118
           +ES    D++ +Q+    S  +V P+K + +     ET ++G      E   T+   +  
Sbjct: 61  EESSNKRDSSGDQSGPGVSQSEVPPSKSSVST---DETSSSGPVLLTREIHPTDADVQSV 117

Query: 119 PSIPLTEQSKDMSKHDADRVEIPETFTDLD---TATPNGEILNENDSDVHLNHPPSP-LP 174
            S+PL+      +K D   V   E+  D D   +   +G+I   NDS V     PSP LP
Sbjct: 118 LSLPLSVAD---TKSDDAAVVAQESIVDGDRSESKHADGDI--PNDSLVQ----PSPSLP 168

Query: 175 PKEMGIVNEDRIDDAGQITKSADADAPLK-----IDSKIQAVDPPVNSESSLKDA--DVK 227
            KE+ +V  + + DA +     + D   K     +DS + A  P VN  +  +    +VK
Sbjct: 169 DKEIEVVVSENLMDAPKNGTQRELDDSSKRDVENLDSVVHA--PSVNEGNVAQSTGDEVK 226

Query: 228 VETL---------------SNKRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEA 272
           V T                +N +++Q  +AD    K QDQL+EAQGLLK T+STGQSKEA
Sbjct: 227 VGTSINLEKEQEPKVPVTSTNLKREQDRRADTTSMKIQDQLEEAQGLLKATVSTGQSKEA 286

Query: 273 RLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVES 332
           RLARVCAGLSSRLQE K+ENAQLEELL AE+EL++SYEA I+ L+++LS  KSEVTKVES
Sbjct: 287 RLARVCAGLSSRLQEIKAENAQLEELLTAEQELTKSYEASIRHLQKDLSAAKSEVTKVES 346

Query: 333 NLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALR 392
           ++ EALAAKNSEIETLVS++DALK QAAL+EG L+SLQ +MESIMRNREL ETRM+QALR
Sbjct: 347 SMVEALAAKNSEIETLVSAMDALKNQAALNEGKLSSLQGDMESIMRNRELAETRMMQALR 406

Query: 393 EELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELE 452
           EELA+ ERRAEEER+AHNATKMAAMERE ELEHRA +AS AL RIQRIADERTAK  + E
Sbjct: 407 EELATTERRAEEERSAHNATKMAAMERERELEHRAVDASTALVRIQRIADERTAKVADFE 466

Query: 453 QKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAEN 512
           QKVA+LE EC +L QELQDME R +RGQKK+P+EANQ IQ+QAWQDEV+RARQGQRDAE 
Sbjct: 467 QKVALLEAECTSLNQELQDMEVRARRGQKKAPDEANQVIQIQAWQDEVDRARQGQRDAEE 526

Query: 513 KLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKA 572
           KLS +EAE+QK+RVEMAAMKRDAEHYSR+EH ELEKRYRELTDLLYYKQTQLETMASEKA
Sbjct: 527 KLSLMEAEMQKLRVEMAAMKRDAEHYSRQEHTELEKRYRELTDLLYYKQTQLETMASEKA 586

Query: 573 AAEFQLEKEMNRLQEVQSEAERSRVSRRSWSSWEEDAEMKSLENNGRPLPLHHRHIAGAS 632
           AAEFQLEKE+ RL E Q E E+SRVSRR+ ++WEED+E+K+LE    PLPL+HRH+  AS
Sbjct: 587 AAEFQLEKEVKRLHEAQVEVEKSRVSRRASATWEEDSEIKTLE----PLPLYHRHMDTAS 642

Query: 633 VQLQKAAKLLDSGAVRATRFLWRYPIARIILLFYLVFVHLFLMYLLHRLQEQADNFAARE 692
            QLQ A KLLDSGAVRATRFLWRYPIAR+ LLFYLVFVHLFLMYL+HRLQEQA+   A+E
Sbjct: 643 TQLQNAVKLLDSGAVRATRFLWRYPIARMFLLFYLVFVHLFLMYLIHRLQEQAE---AQE 699

Query: 693 VA 694
           VA
Sbjct: 700 VA 701

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79557632|ref|NP_179585.3| golgin candidate 1 [Arabidopsis thaliana] gi|85681038|sp|Q8S8N9.2|GOGC1_ARATH RecName: Full=Golgin candidate 1; Short=AtGC1; AltName: Full=Golgin-84 gi|44917433|gb|AAS49041.1| At2g19950 [Arabidopsis thaliana] gi|110738790|dbj|BAF01318.1| hypothetical protein [Arabidopsis thaliana] gi|330251853|gb|AEC06947.1| golgin candidate 1 [Arabidopsis thaliana]

 Score =  785 bits (2028), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/722 (61%), Positives = 534/722 (73%), Gaps = 52/722 (7%)

Query: 1   MASWLKAAEDLFEVVDRRAKLVVNELADEQSDFQTPASNGQGSQAKKIKSRIKAQRRHSA 60
           MASWLKAAEDLFEVVDRRAK VV +L++EQ+D Q PAS  +GSQ K+  S+   +++   
Sbjct: 1   MASWLKAAEDLFEVVDRRAKSVVEDLSEEQNDLQLPASGRKGSQGKRTSSK---KKKLVK 57

Query: 61  DESLKINDTAREQANTQASPVDVTPNKDTATLAVEKETITTGKTQKNGEQQQTNE--RDA 118
           +ES    D++ +Q+    S  +V P+K + +     ET ++G      E   T+   +  
Sbjct: 58  EESSNKRDSSGDQSGPGVSQSEVPPSKSSVST---DETSSSGPVLLTREIHPTDADVQSV 114

Query: 119 PSIPLTEQSKDMSKHDADRVEIPETFTDLD---TATPNGEILNENDSDVHLNHPPSP-LP 174
            S+PL+      +K D   V   E+  D D   +   +G+I   NDS V     PSP LP
Sbjct: 115 LSLPLSVAD---TKSDDAAVVAQESIVDGDRSESKHADGDI--PNDSLVQ----PSPSLP 165

Query: 175 PKEMGIVNEDRIDDAGQITKSADADAPLK-----IDSKIQAVDPPVNSESSLKDA--DVK 227
            KE+ +V  + + DA +     + D   K     +DS + A  P VN  +  +    +VK
Sbjct: 166 DKEIEVVVSENLMDAPKNGTQRELDDSSKRDVENLDSVVHA--PSVNEGNVAQSTGDEVK 223

Query: 228 VETL---------------SNKRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEA 272
           V T                +N +++Q  +AD    K QDQL+EAQGLLK T+STGQSKEA
Sbjct: 224 VGTSINLEKEQEPKVPVTSTNLKREQDRRADTTSMKIQDQLEEAQGLLKATVSTGQSKEA 283

Query: 273 RLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVES 332
           RLARVCAGLSSRLQE K+ENAQLEELL AE+EL++SYEA I+ L+++LS  KSEVTKVES
Sbjct: 284 RLARVCAGLSSRLQEIKAENAQLEELLTAEQELTKSYEASIRHLQKDLSAAKSEVTKVES 343

Query: 333 NLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALR 392
           ++ EALAAKNSEIETLVS++DALK QAAL+EG L+SLQ +MESIMRNREL ETRM+QALR
Sbjct: 344 SMVEALAAKNSEIETLVSAMDALKNQAALNEGKLSSLQGDMESIMRNRELAETRMMQALR 403

Query: 393 EELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELE 452
           EELA+ ERRAEEER+AHNATKMAAMERE ELEHRA +AS AL RIQRIADERTAK  + E
Sbjct: 404 EELATTERRAEEERSAHNATKMAAMERERELEHRAVDASTALVRIQRIADERTAKVADFE 463

Query: 453 QKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAEN 512
           QKVA+LE EC +L QELQDME R +RGQKK+P+EANQ IQ+QAWQDEV+RARQGQRDAE 
Sbjct: 464 QKVALLEAECTSLNQELQDMEVRARRGQKKAPDEANQVIQIQAWQDEVDRARQGQRDAEE 523

Query: 513 KLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKA 572
           KLS +EAE+QK+RVEMAAMKRDAEHYSR+EH ELEKRYRELTDLLYYKQTQLETMASEKA
Sbjct: 524 KLSLMEAEMQKLRVEMAAMKRDAEHYSRQEHTELEKRYRELTDLLYYKQTQLETMASEKA 583

Query: 573 AAEFQLEKEMNRLQEVQSEAERSRVSRRSWSSWEEDAEMKSLENNGRPLPLHHRHIAGAS 632
           AAEFQLEKE+ RL E Q E E+SRVSRR+ ++WEED+E+K+LE    PLPL+HRH+A AS
Sbjct: 584 AAEFQLEKEVKRLHEAQVEVEKSRVSRRASATWEEDSEIKTLE----PLPLYHRHMATAS 639

Query: 633 VQLQKAAKLLDSGAVRATRFLWRYPIARIILLFYLVFVHLFLMYLLHRLQEQADNFAARE 692
            QLQ A KLLDSGAVRATRFLWRYPIAR+ LLFYLVFVHLFLMYL+HRLQEQA+   A+E
Sbjct: 640 TQLQNAVKLLDSGAVRATRFLWRYPIARMFLLFYLVFVHLFLMYLIHRLQEQAE---AQE 696

Query: 693 VA 694
           VA
Sbjct: 697 VA 698

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297832160|ref|XP_002883962.1| hypothetical protein ARALYDRAFT_899882 [Arabidopsis lyrata subsp. lyrata] gi|297329802|gb|EFH60221.1| hypothetical protein ARALYDRAFT_899882 [Arabidopsis lyrata subsp. lyrata]

 Score =  771 bits (1992), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/766 (59%), Positives = 536/766 (69%), Gaps = 99/766 (12%)

Query: 1   MASWLKAAEDLFEVVDRRAKLVVNELADEQSDFQTPASNGQGSQAKKIKSRIKAQRRHSA 60
           MASWLKAAEDLFEVVDRRAK VV EL++EQ+D Q PAS  +GSQ K+  S+ KA+++   
Sbjct: 1   MASWLKAAEDLFEVVDRRAKSVVEELSEEQTDLQLPASGRKGSQGKRTSSKKKARQKLVK 60

Query: 61  DESLKINDTAREQANTQASPVDVTPNKDTATLAVEKETITTGKTQKNGEQQQTNE----R 116
           +ES    D + +Q+    S  +V P+ D A+               +G   QTNE     
Sbjct: 61  EESSNKRDFSGDQSGPGVSQSEVPPSIDEAS--------------SSGPVLQTNEIRTDA 106

Query: 117 DAPSIPLTEQSKDMSKHDADRVEIPETFTDLDTATP---NGEILNENDSDVHLNHPPSP- 172
           D  S+    QS   +K D   V   E+  D D A     +G+I   NDS V     PSP 
Sbjct: 107 DVQSVQSLPQSVADTKSDDAAVVGSESVVDGDGAESKHADGDI--PNDSLVQ----PSPS 160

Query: 173 LPPKEMGI-VNEDRIDDAGQITKSADADAPLKIDSKIQAVD--PPV---NSESSLKDADV 226
           LP KE+ + V+E+ +D      +    D+  +   K+++V   P V   N   S  D +V
Sbjct: 161 LPDKEIEVAVSENLVDAPKNGAQRELVDSSKRDLEKLESVVHVPSVGEGNVAQSTGD-EV 219

Query: 227 KV---------------ETLSNKRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKE 271
           KV               +T +N +++Q  +AD    K QDQL+EAQGLLK T+STGQSKE
Sbjct: 220 KVGTSINLEKEQEPEVPDTSTNLKREQDRRADTTSVKIQDQLEEAQGLLKATVSTGQSKE 279

Query: 272 ARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVE 331
           ARLARVCAGLSSRLQE K+ENAQLEELL AE+EL++SYEA I+QL+++LS  KSEVTKVE
Sbjct: 280 ARLARVCAGLSSRLQEIKAENAQLEELLSAEQELTKSYEASIRQLQKDLSAAKSEVTKVE 339

Query: 332 SNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQAL 391
           S++ EALAAKNSEIETLVS++DALK QAAL+EG L+SLQ +MESI+RNREL ETRM+QAL
Sbjct: 340 SSMVEALAAKNSEIETLVSAMDALKNQAALNEGKLSSLQGDMESILRNRELAETRMMQAL 399

Query: 392 REELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGEL 451
           REELA+ ERRAEEE +AHNATKMAAMERE ELEHRA +AS AL RIQRIADERTAK  +L
Sbjct: 400 REELATTERRAEEEHSAHNATKMAAMERERELEHRAVDASTALVRIQRIADERTAKVADL 459

Query: 452 EQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQM-------------QAWQD 498
           EQKVA+LE EC +L QELQDME R +RGQKK+P+EANQ IQ+             QAWQD
Sbjct: 460 EQKVALLEAECTSLNQELQDMEVRARRGQKKAPDEANQVIQILANPEELLLIMQIQAWQD 519

Query: 499 EVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLY 558
           EV+RARQGQRDAE KLSS+EAE+QK+RVEMAAMKRDAEHYSR+EH ELEKRYRELTDLLY
Sbjct: 520 EVDRARQGQRDAEEKLSSMEAEMQKLRVEMAAMKRDAEHYSRQEHTELEKRYRELTDLLY 579

Query: 559 YKQTQLETMASEKAAAEFQLEKEMNRLQEVQSEAERSRVSRRSWSSWEEDAEMKSLENNG 618
           YKQTQLETMASEKAAAEFQLEKE+ RL E Q E ERSRVSRR  ++WEED+E+K+LE   
Sbjct: 580 YKQTQLETMASEKAAAEFQLEKEVKRLHEAQVEVERSRVSRRPSATWEEDSEIKTLE--- 636

Query: 619 RPLPLHHRHIAGASVQLQKAAKLLDSGAVRATRFLWRYPIARIILLFYLV---------- 668
            PLPL+HRH+A AS QLQ A KLLDSGAVRATRFLWRYPIARI LLFYLV          
Sbjct: 637 -PLPLYHRHMATASTQLQNAVKLLDSGAVRATRFLWRYPIARIFLLFYLVRRSLIYSISF 695

Query: 669 -------------------FVHLFLMYLLHRLQEQADNFAAREVAE 695
                              FVHLFLMYLLHRLQEQA+   A+EVAE
Sbjct: 696 ALLVNLWYIKMTSFMNLQVFVHLFLMYLLHRLQEQAE---AQEVAE 738

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	705
UNIPROTKB|Q6GNT7	722	golga5 "Golgin subfamily A mem	0.597	0.583	0.250	2.4e-19
UNIPROTKB|Q8TBA6	731	GOLGA5 "Golgin subfamily A mem	0.548	0.529	0.237	8.8e-19
UNIPROTKB|E2QWJ2	731	GOLGA5 "Uncharacterized protei	0.817	0.787	0.208	1.1e-18
UNIPROTKB|F1SD67	729	GOLGA5 "Uncharacterized protei	0.775	0.750	0.220	8.5e-18
MGI|MGI:1351475	729	Golga5 "golgi autoantigen, gol	0.548	0.530	0.225	1.4e-17
UNIPROTKB|A5D7A5	732	GOLGA5 "GOLGA5 protein" [Bos t	0.548	0.528	0.225	6.4e-17
UNIPROTKB|E1C947	735	GOLGA5 "Uncharacterized protei	0.551	0.529	0.229	1.1e-16
RGD|1308163	728	Golga5 "golgin A5" [Rattus nor	0.550	0.532	0.217	2.2e-16
ZFIN|ZDB-GENE-040426-2749	760	golga5 "golgi autoantigen, gol	0.798	0.740	0.229	6.3e-15
ZFIN|ZDB-GENE-030131-9795	1336	rrbp1a "ribosome binding prote	0.741	0.391	0.226	2.2e-13

UNIPROTKB|Q6GNT7 golga5 "Golgin subfamily A member 5" [Xenopus laevis (taxid:8355)]

 Score = 264 (98.0 bits), Expect = 2.4e-19, P = 2.4e-19
 Identities = 114/455 (25%), Positives = 192/455 (42%)

Query:   216 NSESSLKDADVKVETLSNKRKQQALKADDPPTKE-QDQLDEAQGLLKTTISTGQSKEARL 274
             N ++S  D   +          +A+ A D      + +L EA  LLK+   T +S +   
Sbjct:   261 NGDNSKNDRTARELRAQVDDLSEAMAAKDSQLAVLKVRLQEADQLLKSRTETLESLQIEK 320

Query:   275 ARVCAGLS--SRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVES 332
             +R+    S  S +     +  Q E L  AE  L R  E+  KQ++ E +   S++     
Sbjct:   321 SRILQDQSEGSSIHNQALQTMQ-ERLREAESTLIREQES-YKQIQNEFATRLSKIEAERQ 378

Query:   333 NLAEA-LAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQXX 391
             NLAEA + A+   +E    S D L++Q   S+  L SL+  M    +      TR++Q  
Sbjct:   379 NLAEAVILAEKKHMEEKRKS-DDLQQQLKTSKVGLDSLKQEMADYKQKA----TRILQSK 433

Query:   392 XXXXXXXXXXXXXXXX-XHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGE 450
                               H+A+ M       ELE    E  M    IQ++  +      E
Sbjct:   434 EKLINSLKEGSGIEGLDSHSASTM-------ELEEMRHERDMQREEIQKLMGQIQQLKAE 486

Query:   451 LEQKVAMLEVECATLQQELQDMEARLKRGQKKSPE-EANQAIQMQAWQDEVERARQGQRD 509
             L+        E  + +++LQD+  +    Q+   E EA    Q Q +Q   E   + +  
Sbjct:   487 LQDVETQQVSEAESAREQLQDVHEQFATQQRAKQELEAELERQKQEFQYIQEDLYKTKNT 546

Query:   510 AENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMAS 569
              + ++   E E+QK+R ++       +  S     ELE R  +LT+ L  KQT LE +++
Sbjct:   547 LQGRIRDREDEIQKLRNQLTN-----KALSSSSQTELENRLHQLTETLIQKQTMLENLST 601

Query:   570 EKAAAEFQLEKEMNRLQXXXXXXXXXXXXXXXXXXXXXXXXMKS---LENNGRPLPLHHR 626
             EK +  +QLE+  ++L+                        M++   L ++  P      
Sbjct:   602 EKNSLVYQLERLEHQLKNVQGSSLNGTSINMSVIESNEGARMRNVPVLFSDSDP------ 655

Query:   627 HIAGASVQLQKAAKLLDSGAVRATRFLWRYPIARI 661
             ++AG   +++KAA  +D  ++R   FL RYPIAR+
Sbjct:   656 NVAGMYGRVRKAATSIDQFSIRLGIFLRRYPIARV 690

GO:0005794 "Golgi apparatus" evidence=ISS

GO:0007030 "Golgi organization" evidence=ISS

GO:0042803 "protein homodimerization activity" evidence=ISS

GO:0048193 "Golgi vesicle transport" evidence=ISS

UNIPROTKB|Q8TBA6 GOLGA5 "Golgin subfamily A member 5" [Homo sapiens (taxid:9606)]

 Score = 259 (96.2 bits), Expect = 8.8e-19, P = 8.8e-19
 Identities = 99/416 (23%), Positives = 183/416 (43%)

Query:   252 QLDEAQGLLKTTISTGQSKEARLARVCAGLS--SRLQEYKSENAQLEELLVAERELSRSY 309
             +L EA  LL T     ++ ++  +R+    S  + LQ    +  Q E L  A+  L R  
Sbjct:   307 RLQEADQLLSTRTEALEALQSEKSRIMQDQSEGNSLQNQALQTFQ-ERLHEADATLKREQ 365

Query:   310 EARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASL 369
             E+  KQ++ E +   ++V     NLAEA+     +       +D L++Q  L + NL S 
Sbjct:   366 ES-YKQMQSEFAARLNKVEMERQNLAEAITLAERKYSDEKKRVDELQQQVKLYKLNLESS 424

Query:   370 QMNMESIMRNRELTETRMIQXXXXXXXXXXXXXXXXXXXHNATKMAAMEREVELEHRAAE 429
             +  +    +      TR++Q                    +++  ++ME E EL H   E
Sbjct:   425 KQELIDYKQKA----TRILQSKEKLINSLKEGSGFEGL--DSSTASSMELE-ELRH---E 474

Query:   430 ASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQ 489
               M    IQ++  +      EL+   A    E  + +++LQD+  ++  GQK S +E   
Sbjct:   475 KEMQREEIQKLMGQIHQLRSELQDMEAQQVNEAESAREQLQDLHDQIA-GQKASKQELET 533

Query:   490 AIQM--QAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELE 547
              ++   Q +    E   + +   ++++   + E+QK+R ++       +  S     ELE
Sbjct:   534 ELERLKQEFHYIEEDLYRTKNTLQSRIKDRDEEIQKLRNQLTN-----KTLSNSSQSELE 588

Query:   548 KRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQXXXXXXXXXXXXXXXXXXXXX 607
              R  +LT+ L  KQT LE++++EK +  FQLE+   ++                      
Sbjct:   589 NRLHQLTETLIQKQTMLESLSTEKNSLVFQLERLEQQMNSASGSSSNGSSINMSGIDNGE 648

Query:   608 XXXMKSLENNGRPLPLH--HRHIAGASVQLQKAAKLLDSGAVRATRFLWRYPIARI 661
                ++++     P+  +    ++AG   +++KAA  +D  ++R   FL RYPIAR+
Sbjct:   649 GTRLRNV-----PVLFNDTETNLAGMYGKVRKAASSIDQFSIRLGIFLRRYPIARV 699

GO:0000139 "Golgi membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0005801 "cis-Golgi network" evidence=IDA

GO:0007030 "Golgi organization" evidence=IMP

GO:0017137 "Rab GTPase binding" evidence=IDA

GO:0048193 "Golgi vesicle transport" evidence=IMP

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0031985 "Golgi cisterna" evidence=IDA

UNIPROTKB|E2QWJ2 GOLGA5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 258 (95.9 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 129/619 (20%), Positives = 247/619 (39%)

Query:    55 QRRHSADESLKINDTAREQANTQASPVDVTPNKDTATLAVEKETITTGKTQKNGEQQQTN 114
             +R+ S  +   + D         +  V++   K    +     T T      +    +T 
Sbjct:   112 RRKKSEPDDELLFDFLNSSQKEPSGRVEIKKEKSKTPVFQSSRTATVSSMNTSKTTVKTI 171

Query:   115 ERDAPSIPLTEQSKDMSKHDADRVEIPETFTDLDTATPNGEILNENDSDVH--LNHPPSP 172
             E + P      Q+ + S +     E+ E  +  +  + +    + N +  H   +H  S 
Sbjct:   172 EENPPG----SQTDETSNNSDSGHEVQED-SSKENVSSSAASTDHNPTPTHDGKSHELSN 226

Query:   173 LPPKEMGIVNEDRI---DDAGQITKSADADAPLKIDSKIQAVDPPVNSESSLKDADVKVE 229
             L  +   + NE +    + A  + +S +    L   +K +A     N + S  D   +  
Sbjct:   227 LRLENQLLRNEVQSLNQEMASLLQRSKETQEEL---NKARARVEKWNVDHSKSDRITREL 283

Query:   230 TLSNKRKQQALKADDPPTKE-QDQLDEAQGLLKTTISTGQSKEARLARVCAGLS--SRLQ 286
                     +A+ A D      + +L EA  LL T     ++ ++  +R+    S  S LQ
Sbjct:   284 RAQVDDLTEAVAAKDSQLAVLKVRLQEADQLLNTRTEALEALQSEKSRIMQDHSEGSSLQ 343

Query:   287 EYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIE 346
                 +  Q E L  A+    R  E+  KQ++ E +   +++     NLAEA+     +  
Sbjct:   344 NQALQTLQ-ERLHEADATRKREQES-YKQIQSEFAARLNKMEVERQNLAEAVTLAERKYS 401

Query:   347 TLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQXXXXXXXXXXXXXXXXX 406
                  +D L++Q  + + NL S +  +    +      TR++Q                 
Sbjct:   402 DEKKRVDELQQQVKVYKSNLESSKQELIDYKQKA----TRILQSKEKLINSLKEGSGFEG 457

Query:   407 XXHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQ 466
                +     +ME E EL H   E  M    IQ++  +      EL+        E  + +
Sbjct:   458 LDSSTAN--SMELE-ELRH---EKEMQKEEIQKLMGQIHQLRSELQDMEVQQVSEAESAR 511

Query:   467 QELQDMEARLKRGQKKSPEEANQAIQMQAWQDEV--ERARQGQRDAENKLSSLEAEVQKM 524
             ++LQD++ ++  GQK S +E    ++ Q  +     E   + +   ++++   E E+QK+
Sbjct:   512 EQLQDLQDQIA-GQKASKQELEAELERQKQEFHYIEEDLYRTKNTLQSRIKDREEEIQKL 570

Query:   525 RVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNR 584
             R ++       +  S     ELE R  +LT+ L  KQT LE++++EK +  FQLE+   +
Sbjct:   571 RNQLTN-----KTLSNSSQSELENRLHQLTETLIQKQTMLESLSTEKNSLVFQLERLEQQ 625

Query:   585 LQXXXXXXXXXXXXXXXXXXXXXXXXMKSLENNGRPLPLH--HRHIAGASVQLQKAAKLL 642
             +                         ++++     P+  +    ++AG   +++KAA  +
Sbjct:   626 VNSASGSNSNGSSINMSAVDSGEGTRLRNV-----PVLFNDTEMNLAGMYGKVRKAASSI 680

Query:   643 DSGAVRATRFLWRYPIARI 661
             D  ++R   FL RYPIAR+
Sbjct:   681 DQFSIRLGIFLRRYPIARV 699

GO:0048193 "Golgi vesicle transport" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0031985 "Golgi cisterna" evidence=IEA

GO:0017137 "Rab GTPase binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0007030 "Golgi organization" evidence=IEA

GO:0005801 "cis-Golgi network" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

UNIPROTKB|F1SD67 GOLGA5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 250 (93.1 bits), Expect = 8.5e-18, P = 8.5e-18
 Identities = 130/589 (22%), Positives = 238/589 (40%)

Query:    89 TATLAVEKETITTGKTQKNGEQQQTNERDAPSIPLTEQSKDMSKHDA--DRVEIPETFTD 146
             T  + ++KE   T   Q +     +     P++   E+      H+A  + V   E   D
Sbjct:   135 TGKVEIKKERGKTPVFQSSRTGVHSVNTGVPTVKTVEEDPGSQGHEAATNSVSGHEGQED 194

Query:   147 L--DTATPNGEILNENDS--DVHLNHPPSPLPPKEMGIVNEDRI---DDAGQITKSADAD 199
                +  +PN    + N +  D   +H  S L  +   + NE +    + A  + +S +  
Sbjct:   195 SSKENISPNTACADHNPTPNDDGKSHELSNLRLENQLLRNEVQSLNQEMASLLQRSKETQ 254

Query:   200 APLKIDSKIQAVDPPVNSESSLKDADVKVETLSNKRKQQALKADDPPTKE-QDQLDEAQG 258
               L   +K +A     N + S  D   +          +A+ A D      + +L EA  
Sbjct:   255 EEL---NKARARVEKWNVDHSKSDRITRELRAQVDDLTEAVAAKDSQLAVLKVRLQEADQ 311

Query:   259 LLKTTISTGQSKEARLARVCAGLS--SRLQEYKSENAQLEELLVAERELSRSYEARIKQL 316
             LL       ++ +   +R+    S  S LQ    +  Q E L  A+  L R  E+  KQ+
Sbjct:   312 LLSARTEALEALQNEKSRIMQDHSEGSSLQNQALQTLQ-ERLHEADASLKREQES-YKQM 369

Query:   317 EQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESI 376
             + E +   +++     NLAEA+     +       +D L++Q    + N+ S +  +   
Sbjct:   370 QSEFAARLNKMEVERLNLAEAVTLAERKYSDEKKRVDELQQQVKTLKSNVESSKQELIDY 429

Query:   377 MRNRELTETRMIQXXXXXXXXXXXXXXXXXXXHNATKMAAMEREVELEHRAAEASMALAR 436
              +      TR++Q                    +     +ME E EL H   E  M    
Sbjct:   430 KQKA----TRILQSKEKLINSLKEGSGFEGLDSSTAN--SMELE-ELRH---EKEMQREE 479

Query:   437 IQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAI--QMQ 494
             IQ++  +      EL+   A    E  + ++ LQD++ ++  GQK S +E    +  Q Q
Sbjct:   480 IQKLMGQIHQLRSELQDMEAQQVSEAESARERLQDLQDQIA-GQKASKQELEAELERQKQ 538

Query:   495 AWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELT 554
              +    E   + +   ++++   E E+QK+R ++       +  S     ELE R  +LT
Sbjct:   539 EFHYMEEDLYRTKNTLQSRIKDREDEIQKLRNQLTN-----KTLSNSSQSELENRLHQLT 593

Query:   555 DLLYYKQTQLETMASEKAAAEFQLEKEMNRLQXXXXXXXXXXXXXXXXXXXXXXXXMKSL 614
             + L  KQT LE++++EK +  FQLE+   ++                         ++++
Sbjct:   594 ETLIQKQTMLESLSTEKNSLVFQLERLEQQMNSASGSSSNGSSINMSGVDSGEGTRLRNV 653

Query:   615 ENNGRPLPLH--HRHIAGASVQLQKAAKLLDSGAVRATRFLWRYPIARI 661
                  P+  +    ++AG   +++KAA  +D  ++R   FL RYPIAR+
Sbjct:   654 -----PVLFNDTETNLAGMYGKVRKAASSIDQFSIRLGIFLRRYPIARV 697

GO:0048193 "Golgi vesicle transport" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0031985 "Golgi cisterna" evidence=IEA

GO:0017137 "Rab GTPase binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0007030 "Golgi organization" evidence=IEA

GO:0005801 "cis-Golgi network" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

MGI|MGI:1351475 Golga5 "golgi autoantigen, golgin subfamily a, 5" [Mus musculus (taxid:10090)]

 Score = 248 (92.4 bits), Expect = 1.4e-17, P = 1.4e-17
 Identities = 94/416 (22%), Positives = 181/416 (43%)

Query:   252 QLDEAQGLLKTTISTGQSKEARLARVCAGLS--SRLQEYKSENAQLEELLVAERELSRSY 309
             +L EA  +L +     ++  +  +R+       S LQ    +  Q E L  A+  L R  
Sbjct:   305 RLQEADQVLSSRTEALEALRSEKSRIMQDHKEGSSLQNQALQTLQ-ERLHEADATLKREQ 363

Query:   310 EARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASL 369
             E+  KQ++ E +   +++     NLAEA+     +       +D L++Q  L   +L S 
Sbjct:   364 ES-YKQMQSEFAARLNKMEVDRQNLAEAVTLAERKYSEEKKKVDELQQQVKLHRASLESA 422

Query:   370 QMNMESIMRNRELTETRMIQXXXXXXXXXXXXXXXXXXXHNATKMAAMEREVELEHRAAE 429
             +  +    +      TR++Q                     ++  ++ME E EL H   E
Sbjct:   423 KQELVDYKQKA----TRILQSKEKLINSLKEGSSFEGL--ESSTASSMELE-ELRH---E 472

Query:   430 ASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQ 489
               M    IQ++  +      EL+   A    E  + +++LQD++ ++ + Q+ S +E   
Sbjct:   473 KEMQKEEIQKLMGQMHQLRSELQDMEAQQVSEAESAREQLQDLQDQIAK-QRTSKQELET 531

Query:   490 AIQM--QAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELE 547
              ++   Q ++   E   + +   ++++   E E+QK+R ++       +  S     ELE
Sbjct:   532 ELERMKQEFRYMEEDLHRTKNTLQSRIKDREEEIQKLRNQLTN-----KTLSNSSQSELE 586

Query:   548 KRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQXXXXXXXXXXXXXXXXXXXXX 607
              R  +LT+ L  KQT LE++++EK +  FQLE+   ++                      
Sbjct:   587 SRLHQLTETLIQKQTMLESLSTEKNSLVFQLERLEQQVHSASSGPNSGSAINMSGVDSGE 646

Query:   608 XXXMKSLENNGRPLPLH--HRHIAGASVQLQKAAKLLDSGAVRATRFLWRYPIARI 661
                ++++     P+  +    ++AG   +++KAA  +D  ++R   FL RYPIAR+
Sbjct:   647 GTRLRNV-----PVLFNDTETNLAGMYGKVRKAASSIDQFSIRLGIFLRRYPIARV 697

GO:0000137 "Golgi cis cisterna" evidence=ISO

GO:0000138 "Golgi trans cisterna" evidence=ISO

GO:0000139 "Golgi membrane" evidence=ISO;IDA

GO:0000301 "retrograde transport, vesicle recycling within Golgi" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0005797 "Golgi medial cisterna" evidence=ISO

GO:0005801 "cis-Golgi network" evidence=ISO

GO:0007030 "Golgi organization" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=ISO

GO:0017137 "Rab GTPase binding" evidence=ISO

GO:0030663 "COPI-coated vesicle membrane" evidence=ISO

GO:0030674 "protein binding, bridging" evidence=ISO

GO:0031985 "Golgi cisterna" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0048193 "Golgi vesicle transport" evidence=ISO

UNIPROTKB|A5D7A5 GOLGA5 "GOLGA5 protein" [Bos taurus (taxid:9913)]

 Score = 242 (90.2 bits), Expect = 6.4e-17, P = 6.4e-17
 Identities = 94/416 (22%), Positives = 178/416 (42%)

Query:   252 QLDEAQGLLKTTISTGQSKEARLARVCAGLS--SRLQEYKSENAQLEELLVAERELSRSY 309
             +L EA  LL T     ++ ++  +R+    S  S LQ    +  Q E L  A+  L R  
Sbjct:   308 RLQEADQLLNTRTEALEALQSEKSRIIQDHSEGSSLQNQALQTLQ-ERLHEADATLKREQ 366

Query:   310 EARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASL 369
             E+  KQ++ E +   +++     NLAEA+     +       +D L++Q  + + +L S 
Sbjct:   367 ES-YKQMQSEFAARLNKMEVERQNLAEAVTLAERKHSDEKKRVDELQQQVKVLKSSLDSS 425

Query:   370 QMNMESIMRNRELTETRMIQXXXXXXXXXXXXXXXXXXXHNATKMAAMEREVELEHRAAE 429
             +  +    +      TR++Q                    +      +E   EL H   E
Sbjct:   426 KQELADYKQKA----TRILQSKEKLINSLKEGSGFEGLDSSTANSVELE---ELRH---E 475

Query:   430 ASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQ 489
                    IQ++  +      EL+   A    E  + +++LQD++ ++  GQ+ + +E   
Sbjct:   476 KETQREEIQKLMGQIHQLRSELQDIEAQQVSEAESAREQLQDLQDQIA-GQRAAKQELEA 534

Query:   490 AI--QMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELE 547
              +  Q Q +    E   + +   ++++   E E+QK+R ++       +  S     ELE
Sbjct:   535 ELDRQKQEFHYIEEDLYRTKNTLQSRIKDREDEIQKLRNQLTN-----KTLSNSSQSELE 589

Query:   548 KRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQXXXXXXXXXXXXXXXXXXXXX 607
              R  +LT+ L  KQT LE++++EK +  FQLE+   ++                      
Sbjct:   590 NRLHQLTETLIQKQTMLESLSTEKNSLVFQLERLEQQINSAAGSSSNGSSINMAGVDSGE 649

Query:   608 XXXMKSLENNGRPLPLH--HRHIAGASVQLQKAAKLLDSGAVRATRFLWRYPIARI 661
                ++++     P+  +    ++AG   +++KAA  +D  ++R   FL RYPIAR+
Sbjct:   650 GTRLRNV-----PVLFNDTETNLAGMYGKVRKAASSIDQFSIRLGIFLRRYPIARV 700

GO:0048193 "Golgi vesicle transport" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0031985 "Golgi cisterna" evidence=IEA

GO:0017137 "Rab GTPase binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0007030 "Golgi organization" evidence=IEA

GO:0005801 "cis-Golgi network" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

UNIPROTKB|E1C947 GOLGA5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 240 (89.5 bits), Expect = 1.1e-16, P = 1.1e-16
 Identities = 95/414 (22%), Positives = 179/414 (43%)

Query:   252 QLDEAQGLLKTTISTGQSKEARLARVCAGLS--SRLQEYKSENAQLEELLVAERELSRSY 309
             +L EA  LL +     ++ ++  +R+    S  S LQ    +  Q + L  A+  L R  
Sbjct:   311 RLQEADQLLSSRTEALEALQSEKSRIIQDHSEGSSLQNQALQTLQ-DRLRDADSTLKREQ 369

Query:   310 EARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASL 369
             E+  KQ++ E +   S++     NLAE + A   +        D L++Q  +++  L S 
Sbjct:   370 ES-YKQMQNEFAARLSKMEAERQNLAEGVTAAERKYLDEKKRADELQQQVKVTKNQLESA 428

Query:   370 QMNMESIMRNRELTETRMIQXXXXXXXXXXXXXXXXXXXHNATKMAAMEREVELEHRAAE 429
             +  +    +      TR++Q                    ++   + ME E EL H   E
Sbjct:   429 KQELADYKQKA----TRILQSKEKLINSLKEGSGIEGL--DSQTASTMELE-ELRH---E 478

Query:   430 ASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQ 489
                    IQ++  +      EL+        E  +++++LQD++ ++    K + +EA  
Sbjct:   479 RDTQREEIQKLMGQIQQMRTELQDMETQQVSEAESVREQLQDLQEQIA-AHKMAKQEAEA 537

Query:   490 AI--QMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELE 547
              +  Q Q  +   E   + +   ++++   E E+QK+R ++       +  S     ELE
Sbjct:   538 ELERQKQELRYTEEELYRTKNTLQSRIKDREEEIQKLRNQLTN-----KALSSSSQTELE 592

Query:   548 KRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQXXXXXXXXXXXXXXXXXXXXX 607
              R  +LT+ L  KQT LE++++EK +  +QLE+  ++L+                     
Sbjct:   593 NRLHQLTETLIQKQTMLESLSTEKNSLVYQLERLEHQLKAFQGSSTNGPSINMAGIDGTE 652

Query:   608 XXXMKSLENNGRPLPLHHRHIAGASVQLQKAAKLLDSGAVRATRFLWRYPIARI 661
                M+++      +  +   +AG   +++KAA  +D  ++R   FL RYPIARI
Sbjct:   653 GARMRNVPVLFSDVDTN---VAGMYGRVRKAASSIDQFSIRLGIFLRRYPIARI 703

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005801 "cis-Golgi network" evidence=IEA

GO:0007030 "Golgi organization" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0017137 "Rab GTPase binding" evidence=IEA

GO:0031985 "Golgi cisterna" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0048193 "Golgi vesicle transport" evidence=IEA

RGD|1308163 Golga5 "golgin A5" [Rattus norvegicus (taxid:10116)]

 Score = 237 (88.5 bits), Expect = 2.2e-16, P = 2.2e-16
 Identities = 90/414 (21%), Positives = 178/414 (42%)

Query:   252 QLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEA 311
             +L EA  +L +     ++ ++  +R+    +            L+E   A+  L R  E+
Sbjct:   305 RLQEADQVLSSRTEALEALQSEKSRIMQDHNEGSSLQNQALQTLQERHEADATLKREQES 364

Query:   312 RIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQM 371
               KQ++ E +   +++     NLAEA+     +       +D L++Q  L   +L S + 
Sbjct:   365 -YKQMQSEFATRLNKMEVERQNLAEAVTLAERKYSEERKKVDDLQQQVKLHRSSLESAKQ 423

Query:   372 NMESIMRNRELTETRMIQXXXXXXXXXXXXXXXXXXXHNATKMAAMEREVELEHRAAEAS 431
              +    +      TR++Q                    +++  ++ME E EL H   E  
Sbjct:   424 ELVDYKQKA----TRILQSKEKLINSLKEGSSFEGL--DSSTASSMELE-ELRH---ERE 473

Query:   432 MALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAI 491
             +    IQ++  +      EL+   A    E  + +++LQD++ ++ + Q+ S +E    +
Sbjct:   474 LQKEEIQKLMGQIHQLRSELQDMEAQQVSEAESAREQLQDLQDQIAK-QRASKQELETEL 532

Query:   492 QM--QAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKR 549
                 Q +    E   + +   ++++   E E+QK+R ++       +  S     ELE R
Sbjct:   533 DRMKQEFHYVEEDLHRTKNTLQSRIKDREEEIQKLRNQLTN-----KTLSNSSQSELESR 587

Query:   550 YRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQXXXXXXXXXXXXXXXXXXXXXXX 609
               +LT+ L  KQT LE++++EK +  FQLE+   +L                        
Sbjct:   588 LHQLTETLIQKQTLLESLSTEKNSLVFQLERLEQQLHSAATGPSSGSSINMSGVDSGEGT 647

Query:   610 XMKSLENNGRPLPLH--HRHIAGASVQLQKAAKLLDSGAVRATRFLWRYPIARI 661
              ++++     P+  +    ++AG   +++KAA  +D  ++R   FL RYPIAR+
Sbjct:   648 RLRNV-----PVLFNDTETNLAGMYGKVRKAASSIDQFSIRLGIFLRRYPIARV 696

GO:0000137 "Golgi cis cisterna" evidence=IDA

GO:0000138 "Golgi trans cisterna" evidence=IDA

GO:0000139 "Golgi membrane" evidence=IEA;ISO;IDA

GO:0000301 "retrograde transport, vesicle recycling within Golgi" evidence=IMP

GO:0005794 "Golgi apparatus" evidence=ISO;ISS

GO:0005797 "Golgi medial cisterna" evidence=IDA

GO:0005801 "cis-Golgi network" evidence=IEA;ISO

GO:0007030 "Golgi organization" evidence=IEA;ISO;ISS;IDA

GO:0016021 "integral to membrane" evidence=IEA;ISO

GO:0017137 "Rab GTPase binding" evidence=IEA;ISO;IDA

GO:0030663 "COPI-coated vesicle membrane" evidence=IDA

GO:0030674 "protein binding, bridging" evidence=IPI

GO:0031985 "Golgi cisterna" evidence=IEA;ISO

GO:0042803 "protein homodimerization activity" evidence=IEA;ISO;ISS

GO:0048193 "Golgi vesicle transport" evidence=IEA;ISO;ISS

ZFIN|ZDB-GENE-040426-2749 golga5 "golgi autoantigen, golgin subfamily a, 5" [Danio rerio (taxid:7955)]

 Score = 224 (83.9 bits), Expect = 6.3e-15, P = 6.3e-15
 Identities = 142/620 (22%), Positives = 247/620 (39%)

Query:    68 DTAREQANTQASPVDVTPNKD--TATLAVEKET---ITTGKTQKNGEQQQTNERDAPSIP 122
             +  RE  +   SP  V+      T +LA +  T   +T   +   G  + ++     S  
Sbjct:   140 EVRRETVSKAFSPTGVSAQSQMPTVSLASDLHTGPSVTPTPSSTQGLSRNSSLGSLSSSS 199

Query:   123 LTEQSKDMSKHDADRVEIPETFT----DLDTATPNGEI----LNENDSDVHLNHPPSPLP 174
              + +++D S  D  + ++PE+ T    DL    P  EI    L +        H  S L 
Sbjct:   200 HSVKTEDSSTRDQSQADVPESLTAGLDDLADPQPVLEIQSQDLQQQQQQQGQEHVISNLR 259

Query:   175 PKEMGIVNEDRIDDAGQITKSADADAP-LKIDSKI-QAVDPPVNSESSLKDADVKVETLS 232
              +   + NE  +    Q   S    A  ++ +  + +A     NS+ S  D  V+  +  
Sbjct:   260 LENQLLRNE--VSSLNQEMASLIQRAKDMQEEVNLGRARADKWNSDQSRVDRTVRELSSQ 317

Query:   233 NKRKQQALKADDPPTKE-QDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSE 291
                  +AL A D      + +LDEA  LLK   S    +EA+  RV      R+ +  SE
Sbjct:   318 VDDLTEALSAKDGQLAVLKVRLDEADQLLKARSSA--LEEAQNERV------RILQDHSE 369

Query:   292 NAQLEELLVAE-RELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVS 350
              + L    V   ++  R  EA +K+ EQE   Y+    +++S  A  LA   +E +TL  
Sbjct:   370 GSSLHSQAVQTLQDRLRDAEAAVKR-EQES--YR----QIQSEFAARLAKVEAERQTLAE 422

Query:   351 SIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQXXXXXXXXXXXXXXXXXXXHN 410
             S+   +++    +     LQ   +S     E T+  +                       
Sbjct:   423 SLTNAERRLTEEKQRAEDLQQQAKSSRSAAEYTKQELQDYKNKASRILQSKEKLINSLKE 482

Query:   411 ATKMAAMERE---VELEHRAAEASMALARIQRIADERTAKAGELE--QKVAMLEVECATL 465
              + +  +E     VELE    E  +    IQ++  +  +   E++  +  A+ E E    
Sbjct:   483 GSGLEVLEGAGAGVELEELRHEKELQREEIQKLQAQIQSLRTEIQDLETQALTENESWRE 542

Query:   466 Q-QELQDMEARLKRGQKKSPEEANQAIQ-MQAWQDEVERARQGQRDAENKLSSLEAEVQK 523
             Q  E+Q+  A+  R +++   E  ++ Q +Q  ++E  R +      + ++   E E+QK
Sbjct:   543 QLAEVQEQHAQQIRAKQEIEAELERSKQELQYIEEEHHRTKI---TLQGRVKDREDEIQK 599

Query:   524 MRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMN 583
             +R ++       +  S     ELE R  +LT+ L  KQT LE + +EK +  FQLE+   
Sbjct:   600 LRNQLTN-----KALSNSSQAELEGRLHQLTETLIQKQTMLEALGTEKNSLVFQLERLEQ 654

Query:   584 RLQXXXXXXXXXXXXXXXXXXXXXXXXMKSLENNGRPLPLHHRHIAGASV--QLQKAAKL 641
             +L+                                 P+        G  V  +++KAA  
Sbjct:   655 QLKSLQGGQNSASHINMAAMEG------PGARQRNTPILFSDGDGPGTGVYGKVRKAAST 708

Query:   642 LDSGAVRATRFLWRYPIARI 661
             +D  ++R   FL RYP+AR+
Sbjct:   709 IDRFSIRLGIFLRRYPMARV 728

GO:0048193 "Golgi vesicle transport" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=IEA;ISS

GO:0007030 "Golgi organization" evidence=ISS

GO:0042803 "protein homodimerization activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

ZFIN|ZDB-GENE-030131-9795 rrbp1a "ribosome binding protein 1 homolog a (dog)" [Danio rerio (taxid:7955)]

 Score = 213 (80.0 bits), Expect = 2.2e-13, P = 2.2e-13
 Identities = 132/582 (22%), Positives = 249/582 (42%)

Query:    36 PASNGQGSQAKKIKSRIKAQRRHSADESLKINDTAREQANTQASPVDVTPNKDTATLAVE 95
             PA   + +Q    +   KAQ+  S   + K +  A  Q    ++P    P K T   A +
Sbjct:   299 PAPVQKSAQPAPTEKSAKAQKAASTAPAQKSSPPAPPQ-KPASNP---QPQKGTPLAASQ 354

Query:    96 K-ETIT--TGKTQKNGEQ---QQTNERD---APSIPLTEQSKDMSKHDADRVEIPETFTD 146
             K ET T  + K QK       Q+++  D   +PS P + Q+       A     P T  D
Sbjct:   355 KSETPTEKSVKAQKAAPPAPAQKSSPPDRKPSPSAPASSQNSTSGITPAP--PCP-TVED 411

Query:   147 LDTA-TPNGEILNENDSD-VHLNHPPSPLPPKEMGIVNEDRIDDAGQITKSADADAPLKI 204
                A +P G+   ++ ++       P  + P E+             +TK     A   +
Sbjct:   412 APPAPSPKGKRKKKSKAESASAEVQPKSVAPLEV-------------VTKKVPVMAVPPV 458

Query:   205 DS-KIQAVDP-PVNSESSLKDADVKVETLSNKRKQQALKADDPPTKEQDQLDEAQGLLKT 262
              + K  AV   PV +E S +DA  K ++ S K+ + A+ AD  P      L   + LL T
Sbjct:   459 GTQKAAAVTAVPVKAEESKQDAPPKKKSGSKKKAEPAVAAD--PADSPLYLPY-KALLST 515

Query:   263 TISTGQSK-EAR-LARVCAGLSSRLQE------YKSE-----NAQLEEL---LVAERELS 306
               S   S+ EA+ L ++ +  +  +Q+       K +       QLEE    L AE+E +
Sbjct:   516 VRSMVFSEGEAQQLIQILSDKAGIIQDTWQKATQKGDPVVLLKKQLEERDKQLAAEQEDA 575

Query:   307 RSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDA-LKKQAALSEGN 365
              + + R++ L +ELSV KS+V  +E+ L+  L+ +  +I  L + + A  +   A S+  
Sbjct:   576 AAAKGRLRDLNKELSVEKSKVASIETRLSSQLSKREQDIIALQARMQASYQDHLAESQQL 635

Query:   366 LASLQMNMESIMRNRELTETRMIQXXXXXXXXXXXXXXXXXXXHNATKMAAMERE-VELE 424
              A L    + + +       R+ Q                    NA ++A + ++ V L 
Sbjct:   636 NAKLLALQDQLEKGPNAQLARLQQENSILRDALNQATSQTESKQNA-ELAKLRQDCVRLN 694

Query:   425 HRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSP 484
                AE + AL   +++      KA  +E+++  ++   A  +Q LQ    RL+   ++  
Sbjct:   695 KELAEKNDALQADEQLRKNLETKAASVEKQLNQMQASRANAEQALQK---RLEEVSEELR 751

Query:   485 EEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHM 544
             +  +    +QA  ++ ++      +A+ +++S+E E+++    + +++   +    E   
Sbjct:   752 QTQSNRNNLQAQLEQAQKDAAALAEAKARVASVEVEMKERTGHLESLQSQLKQTQTEREQ 811

Query:   545 ELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQ 586
             +L K   ++++ +  +  Q      EK  A   LE+E+ +L+
Sbjct:   812 QL-KEQNDISETVTAELEQARKSLKEKEIAVSTLEEELTQLK 852

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5JLY8	GOGA5_ORYSJ	No assigned EC number	0.5652	0.9517	0.9464	yes	no
Q8S8N9	GOGC1_ARATH	No assigned EC number	0.6108	0.9503	0.9476	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	705
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-10
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	4e-10
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	8e-10
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-09
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	4e-09
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	6e-09
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-08
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-08
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	4e-08
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-08
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-07
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-07
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-07
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-06
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	4e-06
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-05
pfam09787	509	pfam09787, Golgin_A5, Golgin subfamily A member 5	1e-05
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	4e-05
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	7e-05
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	8e-05
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	2e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-04
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	3e-04
PRK09039	343	PRK09039, PRK09039, hypothetical protein; Validate	4e-04
PRK09039	343	PRK09039, PRK09039, hypothetical protein; Validate	7e-04
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	0.001
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	0.001
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	0.001
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.002
pfam09726	680	pfam09726, Macoilin, Transmembrane protein	0.002
COG4372	499	COG4372, COG4372, Uncharacterized protein conserve	0.002
pfam13514	1118	pfam13514, AAA_27, AAA domain	0.003
pfam13166	713	pfam13166, AAA_13, AAA domain	0.003
pfam12128	1198	pfam12128, DUF3584, Protein of unknown function (D	0.003
PRK04863	1486	PRK04863, mukB, cell division protein MukB; Provis	0.003
pfam12128	1198	pfam12128, DUF3584, Protein of unknown function (D	0.004
PRK12718	510	PRK12718, flgL, flagellar hook-associated protein	0.004

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 63.9 bits (156), Expect = 2e-10
 Identities = 61/293 (20%), Positives = 122/293 (41%), Gaps = 11/293 (3%)

Query: 301 AERELSR-SYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQA 359
           A+   S       I++LE+++   + ++ ++E  LAE       E+E L   ++ L+K+ 
Sbjct: 666 AKTNSSILERRREIEELEEKIEELEEKIAELEKALAELR----KELEELEEELEQLRKEL 721

Query: 360 ALSEGNLASLQMNMESIMRNRELTETRM--IQALREELASVERRAEEERAAHNATKMAAM 417
                 +++L+ ++  +    E  E R+  +     EL +     EE           A 
Sbjct: 722 EELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAE 781

Query: 418 EREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLK 477
               ELE +  +    L  ++   DE  A+   L ++ A L     +L++ +   E RL+
Sbjct: 782 AEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLE 841

Query: 478 RGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEH 537
             +++  E +     + A   E+E   +   + E++L +L  E   +   +A ++ + E 
Sbjct: 842 DLEEQIEELSEDIESLAA---EIEELEELIEELESELEALLNERASLEEALALLRSELEE 898

Query: 538 YSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQS 590
            S E   ELE +  EL   L   + +L  +       E +++    RL E  S
Sbjct: 899 LSEELR-ELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYS 950

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 63.2 bits (154), Expect = 4e-10
 Identities = 57/269 (21%), Positives = 120/269 (44%), Gaps = 16/269 (5%)

Query: 335 AEALAAKNSEIETL-----VSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQ 389
           AE      +E+  L     V  ++ L+++    +  L   +  +E +    +  E + ++
Sbjct: 212 AERYKELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEK-LE 270

Query: 390 ALREELASVERRAEEERAAHNATKMAAMEREVELEH---RAAEASMALARIQRIADERTA 446
            LR E++ +E   EE +    A        E + +    R A     L  ++   +E  +
Sbjct: 271 ELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELES 330

Query: 447 KAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQG 506
           K  EL +++A LE +   L++EL+ +EA L+  + +  E  +   +++  ++++E  R  
Sbjct: 331 KLDELAEELAELEEKLEELKEELESLEAELEELEAELEELES---RLEELEEQLETLRSK 387

Query: 507 QRDAENKLSSLEAEVQKM--RVEMAAMKRDAEHYSREEHME--LEKRYRELTDLLYYKQT 562
               E +++SL  E++++  R+E    +R+      EE ++   E   +EL   L   + 
Sbjct: 388 VAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEE 447

Query: 563 QLETMASEKAAAEFQLEKEMNRLQEVQSE 591
           +LE +  E    E  LE+    L+E +  
Sbjct: 448 ELEELQEELERLEEALEELREELEEAEQA 476

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 62.0 bits (151), Expect = 8e-10
 Identities = 73/311 (23%), Positives = 141/311 (45%), Gaps = 20/311 (6%)

Query: 248 KEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSR 307
            E   L++    L+  +   + +   L R  A L   L++ +S   +LEE L    E   
Sbjct: 695 NELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELE 754

Query: 308 SYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLA 367
             + R+++LE+EL   +  + K    L E +     + + L   ++ L+++   +E  L 
Sbjct: 755 ELQERLEELEEELESLEEALAK----LKEEIEELEEKRQALQEELEELEEELEEAERRLD 810

Query: 368 SLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRA 427
           +L+  +ES+ + RE  E   I+ L EE+  +E + +E        +    E + ELE   
Sbjct: 811 ALERELESLEQRRERLEQE-IEELEEEIEELEEKLDELEEELEELEKELEELKEELEELE 869

Query: 428 AEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEA 487
           AE       ++ + +E+     ELE+++  LE E A L++E++ +  RL+  + K     
Sbjct: 870 AEKEELEDELKELEEEKE----ELEEELRELESELAELKEEIEKLRERLEELEAKLERLE 925

Query: 488 NQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMR-VEMAAMKRDAEHYSREEHMEL 546
            + +     + E E     + + E ++  LE E++ +  V + A+         EE+ E+
Sbjct: 926 VE-LPELEEELEEEYEDTLETELEREIERLEEEIEALGPVNLRAI---------EEYEEV 975

Query: 547 EKRYRELTDLL 557
           E+RY EL    
Sbjct: 976 EERYEELKSQR 986

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 60.5 bits (147), Expect = 2e-09
 Identities = 75/337 (22%), Positives = 142/337 (42%), Gaps = 33/337 (9%)

Query: 221  LKDADVKVETLSNKRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAG 280
            L +   ++E L  + +Q   + ++  +++   L +    L+  +   + + A+L++    
Sbjct: 700  LAELRKELEELEEELEQLRKELEEL-SRQISALRKDLARLEAEVEQLEERIAQLSKELTE 758

Query: 281  LSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVE---SNLAEA 337
            L + ++E +    + EE L          EA+I+QL++EL   +  + ++    + L E 
Sbjct: 759  LEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEE 818

Query: 338  LAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELAS 397
             A     +E+L   I A +++    E  +  L  ++ES            + A  EEL  
Sbjct: 819  AANLRERLESLERRIAATERRLEDLEEQIEELSEDIES------------LAAEIEELEE 866

Query: 398  VERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAM 457
            +    E E  A    + +  E    L     E S  L  ++    E   +  EL +K+A 
Sbjct: 867  LIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQ 926

Query: 458  LEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSL 517
            LE+    L+  + +++ RL      + EEA         +D+ E AR+  +  ENK+  L
Sbjct: 927  LELRLEGLEVRIDNLQERLSEEYSLTLEEAEA--LENKIEDDEEEARRRLKRLENKIKEL 984

Query: 518  EAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELT 554
                    V +AA+         EE+ EL++RY  LT
Sbjct: 985  G------PVNLAAI---------EEYEELKERYDFLT 1006

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 59.7 bits (145), Expect = 4e-09
 Identities = 75/310 (24%), Positives = 131/310 (42%), Gaps = 36/310 (11%)

Query: 284 RLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNS 343
           RL+E + E  +L+E L    E      A +++LE++L   + EV+++E  + E       
Sbjct: 233 RLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEEL----QK 288

Query: 344 EIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAE 403
           E+  L + I  L++Q  +    LA+L+  +E +    E  E   +  L EELA +E + E
Sbjct: 289 ELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELE-SKLDELAEELAELEEKLE 347

Query: 404 EERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECA 463
           E             E    LE    E    L  ++   +E   +   L  KVA LE++ A
Sbjct: 348 E-----------LKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIA 396

Query: 464 TLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQK 523
           +L  E++ +EARL+R                  +D  ER +Q   +   KL   E +  +
Sbjct: 397 SLNNEIERLEARLER-----------------LEDRRERLQQEIEELLKKLEEAELKELQ 439

Query: 524 MRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMN 583
             +E      +     +EE   LE+   EL + L   +  L+    E A  + +L+    
Sbjct: 440 AELE---ELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLER 496

Query: 584 RLQEVQSEAE 593
             + ++  +E
Sbjct: 497 LQENLEGFSE 506

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 59.0 bits (143), Expect = 6e-09
 Identities = 71/353 (20%), Positives = 143/353 (40%), Gaps = 15/353 (4%)

Query: 253 LDEAQGLL--KTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLE-ELLVAERELSRSY 309
           ++EA G+   K      + K  R       L   L+E + +  +LE +   AER      
Sbjct: 161 IEEAAGVSKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQE--L 218

Query: 310 EARIKQLEQELSVYK-SEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLAS 368
           +A +++LE  L + K  E+ K    L E L+    E+E L   ++  +K+    +  L  
Sbjct: 219 KAELRELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEE 278

Query: 369 LQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAA 428
           L+  +E  ++   L     I+ L  E++ +  R EE        +    E + ++E    
Sbjct: 279 LREELEE-LQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKE 337

Query: 429 EASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEAN 488
           E       ++ +           E+    L      L++  + +   L   + +  E  N
Sbjct: 338 ELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRN 397

Query: 489 QAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEK 548
           +  +++    E+E   +       +L  L+ E++++  E+  ++ + E    EE  ELE+
Sbjct: 398 ELEELKR---EIESLEERLERLSERLEDLKEELKELEAELEELQTELEE-LNEELEELEE 453

Query: 549 RYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQSEAERSRVSRRS 601
           +  EL D    +  +LE   +E      +LEKE++ L+      E  + + + 
Sbjct: 454 QLEELRD----RLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQG 502

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 57.8 bits (140), Expect = 2e-08
 Identities = 62/309 (20%), Positives = 131/309 (42%), Gaps = 15/309 (4%)

Query: 260 LKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQE 319
           L+  I   + K A L +  A L   L+E + E  QL + L        +    + +LE E
Sbjct: 682 LEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAE 741

Query: 320 LSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRN 379
           +   +  + ++   L E  A    EIE L   ++  +++ A +E  +  L+  +E +   
Sbjct: 742 VEQLEERIAQLSKELTELEA----EIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEE 797

Query: 380 RELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQR 439
            +      +  LR EL         E AA+   ++ ++ER +    R  E      +I+ 
Sbjct: 798 LK-ALREALDELRAEL-----TLLNEEAANLRERLESLERRIAATERRLE--DLEEQIEE 849

Query: 440 IADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDE 499
           ++++  + A E+E+   ++E   + L+  L +  +  +       E    + +++  + +
Sbjct: 850 LSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESK 909

Query: 500 VERARQGQRDAENKLSSLEAEVQKMRVEMAAMK-RDAEHYSR--EEHMELEKRYRELTDL 556
               R+   +   KL+ LE  ++ + V +  ++ R +E YS   EE   LE +  +  + 
Sbjct: 910 RSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEE 969

Query: 557 LYYKQTQLE 565
              +  +LE
Sbjct: 970 ARRRLKRLE 978

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 57.4 bits (139), Expect = 2e-08
 Identities = 62/260 (23%), Positives = 114/260 (43%), Gaps = 22/260 (8%)

Query: 363 EGNLASLQMNMESIMRNRELTETRMIQALREELASVER-----RAEEERAAHNATKMAAM 417
           E  L  L+  ++S+ R  E  E    + L+ EL  +E      R EE R      +    
Sbjct: 192 EDILNELERQLKSLERQAEKAER--YKELKAELRELELALLVLRLEELREELEELQEELK 249

Query: 418 EREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLK 477
           E E ELE   AE      +++ +  E      ELE+++  L+ E   L  E+  +E + +
Sbjct: 250 EAEEELEELTAELQELEEKLEELRLEV----SELEEEIEELQKELYALANEISRLEQQKQ 305

Query: 478 RGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEH 537
             +++      Q  +++A  +E+E       +   +L+ LE ++++++ E+ +++ + E 
Sbjct: 306 ILRERLANLERQLEELEAQLEELESKLD---ELAEELAELEEKLEELKEELESLEAELEE 362

Query: 538 YSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQSEAERSRV 597
               E  ELE R  EL       + QLET+ S+ A  E Q+    N ++ +++  ER   
Sbjct: 363 -LEAELEELESRLEEL-------EEQLETLRSKVAQLELQIASLNNEIERLEARLERLED 414

Query: 598 SRRSWSSWEEDAEMKSLENN 617
            R       E+   K  E  
Sbjct: 415 RRERLQQEIEELLKKLEEAE 434

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 56.2 bits (136), Expect = 4e-08
 Identities = 93/461 (20%), Positives = 180/461 (39%), Gaps = 87/461 (18%)

Query: 216 NSESSLKDADVKVETLSNKRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLA 275
             E  +++   ++E L  K K+  LK      +E  +L E        +   + + +RL 
Sbjct: 263 ELEERIEELKKEIEELEEKVKE--LKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLE 320

Query: 276 RVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEA---------RIKQLEQELSVYKSE 326
               G+  R++E + +  +LEEL    +EL +  E            K  ++EL   K  
Sbjct: 321 EEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKR 380

Query: 327 VT-----KVESNLAEALAAKNS---EIETLVSSIDALKKQAALSEGNLASLQ-MNMESIM 377
           +T     K+E  L E   AK     EI  + + I  LKK+    +  +  L+    +  +
Sbjct: 381 LTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPV 440

Query: 378 RNRELTE----------TRMIQALREELASVE---------------------------- 399
             RELTE          T  ++ + +EL  +E                            
Sbjct: 441 CGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKE 500

Query: 400 -----RRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQK 454
                +  EE+   +N  ++     E E   +  E  + L    +   +   K  EL++K
Sbjct: 501 LAEQLKELEEKLKKYNLEELEKKAEEYE---KLKEKLIKLKGEIKSLKKELEKLEELKKK 557

Query: 455 VAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQ------------------MQAW 496
           +A LE +   L++EL ++   L+    +S EE  + ++                  ++  
Sbjct: 558 LAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELERE 617

Query: 497 QDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDL 556
           + E+++  +    A  +L+  E  ++++R E+  +++    YS EE+ EL + Y EL+  
Sbjct: 618 EKELKKLEEELDKAFEELAETEKRLEELRKELEELEKK---YSEEEYEELREEYLELSRE 674

Query: 557 LYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQSEAERSRV 597
           L   + +LE +   +   +  LEK    L+E +   +    
Sbjct: 675 LAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEK 715

Length = 880

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 56.3 bits (136), Expect = 5e-08
 Identities = 56/255 (21%), Positives = 103/255 (40%), Gaps = 19/255 (7%)

Query: 247 TKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELS 306
            +E ++L E    LK  I   + + + L      L + L+E +    +L+E + A +E  
Sbjct: 280 REELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEEL 339

Query: 307 RSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNL 366
              E  +++LEQ L+  +    ++E  L+  L       E L   +  L+ + A     L
Sbjct: 340 EERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNEL 399

Query: 367 ASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHR 426
             L+  +ES+    E         L E L  ++   +E  A     +    E   ELE  
Sbjct: 400 EELKREIESLEERLER--------LSERLEDLKEELKELEAELEELQTELEELNEELEEL 451

Query: 427 AAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEE 486
             +      R++           ELE+++A L+ E   L++EL  +EARL R + +    
Sbjct: 452 EEQLEELRDRLK-----------ELERELAELQEELQRLEKELSSLEARLDRLEAEQRAS 500

Query: 487 ANQAIQMQAWQDEVE 501
                 ++A +  + 
Sbjct: 501 QGVRAVLEALESGLP 515

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 55.1 bits (133), Expect = 1e-07
 Identities = 70/299 (23%), Positives = 131/299 (43%), Gaps = 22/299 (7%)

Query: 281 LSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVE---SNLAEA 337
           L ++L+E + E  +LEE L    E     +  +++ E+E+   KSE+ ++      L E 
Sbjct: 230 LLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEE 289

Query: 338 LAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELAS 397
           L     EIE L   I  L+++    E  L  L+       R  EL E   I+AL+EEL  
Sbjct: 290 LLELKEEIEELEGEISLLRERLEELENELEELEE------RLEELKEK--IEALKEELEE 341

Query: 398 VERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAM 457
            E   EE        + A  E E +L     E       ++ + +    +  ELE ++A 
Sbjct: 342 RETLLEELEQLLAELEEAKEELEEKLSALLEE-------LEELFEALREELAELEAELAE 394

Query: 458 LEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSL 517
           +  E   L++E++ +E RL+R  ++  +   +  +++A  +E++   +   +   +L  L
Sbjct: 395 IRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELE---ELNEELEEL 451

Query: 518 EAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEF 576
           E +++++R  +  ++R+      E    LEK    L   L   + +       +A  E 
Sbjct: 452 EEQLEELRDRLKELERELAELQEELQ-RLEKELSSLEARLDRLEAEQRASQGVRAVLEA 509

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 54.3 bits (131), Expect = 2e-07
 Identities = 61/329 (18%), Positives = 128/329 (38%), Gaps = 35/329 (10%)

Query: 264 ISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVY 323
           ++ G               + LQ  +     L+  L + +   R  E R+ +L QELS  
Sbjct: 655 MTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDA 714

Query: 324 KSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELT 383
                               +I  +   I+ L+++    +  L  L+ ++ S+ +  E  
Sbjct: 715 S------------------RKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIE-N 755

Query: 384 ETRMIQALREELASVERRAEEERAAHNATK-MAAMEREVELEHRAAEASMALARIQRIAD 442
               ++ L   +  +E    +   A N  +   +  R  E++   ++    ++RI+    
Sbjct: 756 VKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLR 815

Query: 443 ERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVER 502
           E   K   L  +   LE E   LQ++  D++ ++K  +K   E  N   + +  ++E+E 
Sbjct: 816 EIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEK---EIENLNGKKEELEEELEE 872

Query: 503 ARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQT 562
                RD E++L  L+ E  ++  ++  ++R  E        ELE +  +    L   + 
Sbjct: 873 LEAALRDLESRLGDLKKERDELEAQLRELERKIE--------ELEAQIEKKRKRLSELKA 924

Query: 563 QLETMASEKAAAEFQLEKEMNRLQEVQSE 591
           +LE +  E +    ++E      +E+  E
Sbjct: 925 KLEALEEELS----EIEDPKGEDEEIPEE 949

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 54.3 bits (131), Expect = 2e-07
 Identities = 66/314 (21%), Positives = 135/314 (42%), Gaps = 44/314 (14%)

Query: 281  LSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAA 340
             S ++ E + E  QLE+     +E     E  +  LEQE+   KSE+ ++E+ + E    
Sbjct: 714  ASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEED 773

Query: 341  KN---------------SEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTET 385
             +               S I  + + +  L+++ +  E  L  ++  +  +   +E  E 
Sbjct: 774  LHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEK 833

Query: 386  RMIQALREELASVERRAEEERAAHNA-TKMAAMEREVELEHRAAEASMA--LARIQRIAD 442
             + +   + +   E+    E+   N   K   +E E+E E  AA   +   L  +++  D
Sbjct: 834  EIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELE-ELEAALRDLESRLGDLKKERD 892

Query: 443  ERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVER 502
            E  A+  ELE+K+  LE +    ++ L +++A+L        E   + +       E+E 
Sbjct: 893  ELEAQLRELERKIEELEAQIEKKRKRLSELKAKL--------EALEEEL------SEIED 938

Query: 503  A-RQGQRDAENKLS--SLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYY 559
               + +   E +LS   ++AE+Q++  E+ A++      + +E+ E+ KR  EL      
Sbjct: 939  PKGEDEEIPEEELSLEDVQAELQRVEEEIRALE-PVNMLAIQEYEEVLKRLDEL------ 991

Query: 560  KQTQLETMASEKAA 573
             + +   +  E+ A
Sbjct: 992  -KEKRAKLEEERKA 1004

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 50.5 bits (121), Expect = 3e-06
 Identities = 66/320 (20%), Positives = 135/320 (42%), Gaps = 25/320 (7%)

Query: 295 LEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDA 354
           LEEL   E  + R  +  I +  Q+L   + E  K E   A     +  E   L+   +A
Sbjct: 176 LEELEEVEENIER-LDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEA 234

Query: 355 LKKQAALSEGNLASLQMNMESIMRNRELTETRM--IQALREELASVERRAEEERAAHNAT 412
           L++Q    E  LASL+  +E +       E R+  I+ L EEL    +   EE       
Sbjct: 235 LERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKE 294

Query: 413 KMAAMEREVELEHRAAEASM-----ALARIQRIADERTAKAGELEQ---KVAMLEVECAT 464
           K+  +E E+    R+          A  R+ ++  E      E+E+   ++         
Sbjct: 295 KIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDK 354

Query: 465 LQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEV--- 521
           L +E  +++  L+  + +  E   +       +DE++  R+     + +++ L+ E+   
Sbjct: 355 LTEEYAELKEELEDLRAELEEVDKEF---AETRDELKDYREKLEKLKREINELKRELDRL 411

Query: 522 ----QKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAE-- 575
               Q++  E+A +          +  ELE+   +    +  ++ +LE +A++ +  E  
Sbjct: 412 QEELQRLSEELADLNAAIAG-IEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQE 470

Query: 576 -FQLEKEMNRLQEVQSEAER 594
            + L++E +R+++  S+ +R
Sbjct: 471 LYDLKEEYDRVEKELSKLQR 490

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 50.1 bits (120), Expect = 4e-06
 Identities = 51/254 (20%), Positives = 97/254 (38%), Gaps = 9/254 (3%)

Query: 218 ESSLKDADVKVETLSNKRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARV 277
            + L++ + K+E L      +  +  +   KE   L      L+      + + A L R 
Sbjct: 259 TAELQELEEKLEEL-RLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQ 317

Query: 278 CAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEA 337
              L ++L+E +S+  +L E L    E     +  ++ LE EL     E+      L   
Sbjct: 318 LEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELE----ELEAELEELESR 373

Query: 338 LAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELAS 397
           L     ++ETL S +  L+ Q A     +  L+  +E +   RE  +  + + L++   +
Sbjct: 374 LEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEA 433

Query: 398 VERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAM 457
             +  + E            E    LE    E    L   ++  D    +  +L+ ++  
Sbjct: 434 ELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDS 493

Query: 458 LEVECATLQQELQD 471
           LE     LQ+ L+ 
Sbjct: 494 LE----RLQENLEG 503

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 48.5 bits (116), Expect = 1e-05
 Identities = 64/302 (21%), Positives = 124/302 (41%), Gaps = 35/302 (11%)

Query: 220 SLKDADVKVETLSNKRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCA 279
            L++   ++E L  + K+   + ++       +L E +  L+         E  +     
Sbjct: 233 RLEELREELEELQEELKEAEEELEE----LTAELQELEEKLEELRLEVSELEEEIEE--- 285

Query: 280 GLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVES---NLAE 336
            L   L    +E ++LE+         +    R+  LE++L   ++++ ++ES    LAE
Sbjct: 286 -LQKELYALANEISRLEQQK-------QILRERLANLERQLEELEAQLEELESKLDELAE 337

Query: 337 ALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELA 396
            LA    ++E L   +++L+ +       L +    +ES +   E           E L 
Sbjct: 338 ELAELEEKLEELKEELESLEAELE----ELEAELEELESRLEELE--------EQLETLR 385

Query: 397 SVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVA 456
           S   + E + A+ N        R   LE R       +  + +  +E  A+  EL+ ++ 
Sbjct: 386 SKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEE--AELKELQAELE 443

Query: 457 MLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSS 516
            LE E   LQ+EL+ +E  L+   ++  EEA QA+   A + E+ + +      E    +
Sbjct: 444 ELEEELEELQEELERLEEALEE-LREELEEAEQAL--DAAERELAQLQARLDSLERLQEN 500

Query: 517 LE 518
           LE
Sbjct: 501 LE 502

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|220402 pfam09787, Golgin_A5, Golgin subfamily A member 5

 Score = 48.3 bits (115), Expect = 1e-05
 Identities = 87/417 (20%), Positives = 166/417 (39%), Gaps = 40/417 (9%)

Query: 273 RLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVES 332
           RL      L     E +   ++    L  E  + R     ++ L+ +L +  + V + + 
Sbjct: 115 RLQEAAQELRELKSELEDLRSERSRDLSDEESIKRLQRGAVRSLQDKLLLLDAAVKRHDG 174

Query: 333 NLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALR 392
           N+  A              ++ L ++ A  +  L  L  +++     ++L +    +   
Sbjct: 175 NVITA----VLIFLKRTLKLEILFQELAERQTALRHLSKHLQEEGELQQLLKLLRAEGES 230

Query: 393 EELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELE 452
           E+    + R +  R   +  K     +E  L     ++S A   ++ +  E       ++
Sbjct: 231 EKQELQQYRQKAHRILQSKEKRINFLKEGCL-FEGLDSSTAQIELEELKHESE----HVQ 285

Query: 453 QKVAMLEVECATLQQELQDMEARLKRGQ---KKSPEEANQAIQMQAWQDEVERARQGQ-- 507
           +++  LE +   L+ E QD EA         +K P E +Q I       + E     Q  
Sbjct: 286 EEITKLEGQIIQLRSEAQDREAEASGEAESFRKQPRELSQQI-APQITTKQELELYYQEL 344

Query: 508 ---RDAENKLSSL--------EAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDL 556
              R+     SS         E+E QK+R  + A  + +         +LE R  +LT  
Sbjct: 345 YHYREDLGNQSSPLNIRLTFRESEKQKLRTALTARAKTSSWS------DLESRLTQLTQS 398

Query: 557 LYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQSEAERSRVSRRSWSSWEEDAEMKSLEN 616
           L  KQT LE + +EK A   QLE+ + +L    S +  S + +    +  +DA+ +    
Sbjct: 399 LVQKQTMLEWLTTEKNALRIQLERLVTQLHSQGSNSAPSSILQEY-VNLTDDAKSRV--- 454

Query: 617 NGRPLPLHHR-HIAGASVQLQKAAKLLDSGAVRATRFLWRYPIARIILLFYLVFVHL 672
              PL +  +      + + ++AA  +D+  +R   FL RYP  R+ ++ Y+  +HL
Sbjct: 455 ---PLAMKDKCFDNRGARRKKRAASSIDTIGIRLGIFLRRYPKDRVSVIVYVALLHL 508

Members of this family of proteins are involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterized: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1. Length = 509

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 46.7 bits (110), Expect = 4e-05
 Identities = 76/401 (18%), Positives = 165/401 (41%), Gaps = 15/401 (3%)

Query: 217  SESSLKDADVKVETLSNKRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLAR 276
            ++ + K  + K    + K+ ++A KAD+   K ++   +A    K      ++ EA  A 
Sbjct: 1292 ADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAE 1351

Query: 277  V-CAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLA 335
               A   +   E K+E A+ ++    ++  +   +A  K+   E      E  K    L 
Sbjct: 1352 AEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELK 1411

Query: 336  EALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREEL 395
            +A AAK           D  KK+A   +      +   E   +  E  +        EE 
Sbjct: 1412 KAAAAKKKA--------DEAKKKAE-EKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEA 1462

Query: 396  ASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKV 455
               +++AEE + A  A K A   ++ +   + AE +   A   + A E   KA E ++  
Sbjct: 1463 ---KKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAE 1519

Query: 456  AMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLS 515
               + + A   +E +  +   K  +KK  +E  +A +++   +E ++A + ++  E+K  
Sbjct: 1520 EAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKK-AEEKKKAEEAKKAEEDKNM 1578

Query: 516  SLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAA- 574
            +L    +  + E A ++   + Y  E+ M+ E+  +     +  ++ +      +K    
Sbjct: 1579 ALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQL 1638

Query: 575  EFQLEKEMNRLQEVQSEAERSRVSRRSWSSWEEDAEMKSLE 615
            + +  +E  + +E++   E +++     +   E+ + K+ E
Sbjct: 1639 KKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEE 1679

Length = 2084

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 45.9 bits (109), Expect = 7e-05
 Identities = 82/387 (21%), Positives = 157/387 (40%), Gaps = 22/387 (5%)

Query: 221 LKDADVKVETLSNKRKQQALKADDPPTKEQDQLDEAQGLLKTT----ISTGQSKEARLAR 276
           +K+A  K+E L  +  +     +D     +++L E + L +          + +   L  
Sbjct: 180 IKEAKAKIEELEGQLSELLEDIEDLLEALEEELKELKKLEEIQEEQEEEELEQEIEALEE 239

Query: 277 VCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVT---KVESN 333
             A L    +  +   A+L E+   E E  +  E  +++LE+ L   + ++    ++E  
Sbjct: 240 RLAELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELERE 299

Query: 334 LAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALRE 393
           + E L  +   +  L+  ++ L ++    E  L  L+  +E +       E   +   + 
Sbjct: 300 IEE-LEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLES-----ELEELAEEKN 353

Query: 394 ELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQ 453
           ELA +     +E           +E+ +E   +  E   A+  ++    E +A   E+++
Sbjct: 354 ELAKLLEERLKELEERLEELEKELEKALERLKQLEE---AIQELKEELAELSAALEEIQE 410

Query: 454 KVAMLEVECATLQQELQDMEARLK--RGQKKSPEEANQAIQMQAWQDEVER-ARQGQRDA 510
           ++  LE E   L++EL+++E  +K    Q    E     I   A   E      Q   + 
Sbjct: 411 ELEELEKELEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCGQELPEE 470

Query: 511 ENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASE 570
             K      E++   +E    +   E   REE  ELEK  REL + L      LE   + 
Sbjct: 471 HEKELLELYELELEELEEELSREKEEAELREEIEELEKELRELEEELI---ELLELEEAL 527

Query: 571 KAAAEFQLEKEMNRLQEVQSEAERSRV 597
           K   E +LEK  N L+E++   E+ ++
Sbjct: 528 KEELEEKLEKLENLLEELEELKEKLQL 554

Length = 908

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 45.9 bits (108), Expect = 8e-05
 Identities = 79/380 (20%), Positives = 151/380 (39%), Gaps = 31/380 (8%)

Query: 234  KRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENA 293
            ++ ++A KA+D    E  +  E     +       +K+A  AR    +    +  K+E+A
Sbjct: 1140 RKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDA 1199

Query: 294  QLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSID 353
            +  E      E  ++ EAR  +  ++       V K E    +A  AK +E E     I 
Sbjct: 1200 RKAEAARKAEEERKAEEARKAEDAKKAE----AVKKAEEAKKDAEEAKKAEEERNNEEI- 1254

Query: 354  ALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATK 413
              +K       + A  Q  +++        E R    L++  A  +++A+E + A    K
Sbjct: 1255 --RKFEEARMAHFARRQAAIKA-------EEARKADELKK--AEEKKKADEAKKAEEKKK 1303

Query: 414  MAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDME 473
                +++ E   +A EA       ++ AD    KA E ++     + E      E +  E
Sbjct: 1304 ADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAE 1363

Query: 474  ARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLE----AEVQKMRVEMA 529
             + +  +KK  E   +A   +   +E ++A + ++ AE      +    A   K + + A
Sbjct: 1364 EKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEA 1423

Query: 530  AMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEK--EMNRLQE 587
              K+ AE   + +  E +K+  E       K  + +  A E   AE   +K  E  +  E
Sbjct: 1424 --KKKAEEKKKAD--EAKKKAEEAK-----KADEAKKKAEEAKKAEEAKKKAEEAKKADE 1474

Query: 588  VQSEAERSRVSRRSWSSWEE 607
             + +AE ++ +  +    EE
Sbjct: 1475 AKKKAEEAKKADEAKKKAEE 1494

Length = 2084

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 44.7 bits (106), Expect = 2e-04
 Identities = 74/392 (18%), Positives = 167/392 (42%), Gaps = 42/392 (10%)

Query: 264 ISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELS---RSYEARIKQLEQEL 320
           I+   S+   L      L   ++E +    ++EEL      L    R  E +I++LE+ +
Sbjct: 209 INEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERI 268

Query: 321 SVYKSEVTKVESNLAE--ALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMR 378
              K E+ ++E  + E   L  K  E   L    +    +    E  L+ L+  +  I  
Sbjct: 269 EELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEE 328

Query: 379 NRELTET--RMIQALREELASVERRAEEERAAHNATKMAAMEREVELE-HRAAEASMALA 435
             +  E     ++ L+++L  +E+R EE    H   +  A  ++ ELE  +     +   
Sbjct: 329 RIKELEEKEERLEELKKKLKELEKRLEELEERHELYEE-AKAKKEELERLKKRLTGLTPE 387

Query: 436 RIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEA---RLKRGQKKSP------EE 486
           ++++  +E      E+E++++ +      L++E+++++     LK+ + K P       E
Sbjct: 388 KLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTE 447

Query: 487 ANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKR------------- 533
            ++   ++ +  E++R  +  ++ E K   L  E++++   +                  
Sbjct: 448 EHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKE 507

Query: 534 ---DAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASE-KAAAEFQ-----LEKEMNR 584
                + Y+ EE  +  + Y +L + L   + +++++  E +   E +     LEK+++ 
Sbjct: 508 LEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDE 567

Query: 585 LQEVQSEAERSRVSRRSWSSWEE-DAEMKSLE 615
           L+E  +E  +  +    + S EE +  +K LE
Sbjct: 568 LEEELAELLK-ELEELGFESVEELEERLKELE 598

Length = 880

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 44.3 bits (105), Expect = 3e-04
 Identities = 51/247 (20%), Positives = 96/247 (38%), Gaps = 28/247 (11%)

Query: 218  ESSLKDADVKVETLSNKRKQQALKADDPPTKEQD---QLDEAQGLLKTTISTGQSKEARL 274
            E +L     ++E L  KR+    + ++   + ++   +LD  +  L++     +  E  +
Sbjct: 771  EEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEI 830

Query: 275  ARV----------CAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYK 324
              +             L   L+E + E  +L+E L          E  +K+LE+E    +
Sbjct: 831  EELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELE 890

Query: 325  SEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESI----MRNR 380
             E+ ++ES LAE       EIE L   ++ L+ +    E  L  L+  +E      +   
Sbjct: 891  EELRELESELAEL----KEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETE 946

Query: 381  ELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRI 440
               E   ++   E L  V  RA EE            ER  EL+ +  +   A  ++  +
Sbjct: 947  LEREIERLEEEIEALGPVNLRAIEEYE-------EVEERYEELKSQREDLEEAKEKLLEV 999

Query: 441  ADERTAK 447
             +E   +
Sbjct: 1000 IEELDKE 1006

Length = 1163

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 43.9 bits (104), Expect = 3e-04
 Identities = 63/343 (18%), Positives = 141/343 (41%), Gaps = 43/343 (12%)

Query: 281 LSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNL------ 334
           L   ++E K    +LE+ +     +    E  IK+ E+EL     E+ ++ S L      
Sbjct: 167 LGEVIKEIKRRIERLEKFIKRTENI----EELIKEKEKELEEVLREINEISSELPELREE 222

Query: 335 AEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALRE- 393
            E L  +  E+E L   I+ L+K+    EG+   L+  +  +    E  +   I+ L E 
Sbjct: 223 LEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKE-IEELEEK 281

Query: 394 --ELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRI---ADERTAKA 448
             EL  ++ +AEE     +      ++   E+E R +     +  I+      +E+  + 
Sbjct: 282 VKELKELKEKAEEYIKL-SEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERL 340

Query: 449 GELEQKVAMLEVECATLQ---QELQDMEARLKRGQKKSPEEANQAIQ-MQAWQDEVERAR 504
            EL++K+  LE     L+   +  ++ +A+ +  ++          + ++   +E+E+A+
Sbjct: 341 EELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAK 400

Query: 505 QGQRDAENKL----SSLEAEVQKMRVEMAAMKRD-------AEHYSREEHMELEKRYREL 553
           +   +  +K+      L+ E+++++  +  +K+            + E   EL + Y   
Sbjct: 401 EEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELLEEYTA- 459

Query: 554 TDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQSEAERSR 596
                    +L+ +  E    E +  K    L+E++   ++  
Sbjct: 460 ---------ELKRIEKELKEIEEKERKLRKELRELEKVLKKES 493

Length = 880

>gnl|CDD|181619 PRK09039, PRK09039, hypothetical protein; Validated

 Score = 43.0 bits (102), Expect = 4e-04
 Identities = 35/153 (22%), Positives = 59/153 (38%), Gaps = 19/153 (12%)

Query: 330 VESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQ 389
            +  L+  ++ K+S ++ L S I  L    +L       LQ                 + 
Sbjct: 40  AQFFLSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQ---------------DSVA 84

Query: 390 ALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAG 449
            LR  L++ E  AE  R      ++A        E RA E +  L   ++++    A+  
Sbjct: 85  NLRASLSAAE--AERSRLQALLAELAGAGAA--AEGRAGELAQELDSEKQVSARALAQVE 140

Query: 450 ELEQKVAMLEVECATLQQELQDMEARLKRGQKK 482
            L Q++A L  + A L+  L   E R +  Q K
Sbjct: 141 LLNQQIAALRRQLAALEAALDASEKRDRESQAK 173

Length = 343

>gnl|CDD|181619 PRK09039, PRK09039, hypothetical protein; Validated

 Score = 42.3 bits (100), Expect = 7e-04
 Identities = 43/160 (26%), Positives = 72/160 (45%), Gaps = 16/160 (10%)

Query: 274 LARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESN 333
           L+R  +G  S L    S+ A+L +LL  ER+ ++  +  +  L   LS  ++E +++++ 
Sbjct: 44  LSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQAL 103

Query: 334 LAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALRE 393
           LAE   A             A + +A      L S +      +   EL   + I ALR 
Sbjct: 104 LAELAGA-----------GAAAEGRAGELAQELDSEKQVSARALAQVELL-NQQIAALRR 151

Query: 394 ELASVER--RAEEERAAHNATKMAAMERE--VELEHRAAE 429
           +LA++E    A E+R   +  K+A + R   V L  R  E
Sbjct: 152 QLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQE 191

Length = 343

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 42.1 bits (99), Expect = 0.001
 Identities = 57/309 (18%), Positives = 119/309 (38%), Gaps = 31/309 (10%)

Query: 269 SKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVT 328
           S+E   A +   +    +E +    +L ELL  E  L    E ++++LE  L   +    
Sbjct: 491 SREKEEAELREEIEELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEELEELKE 550

Query: 329 KVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMI 388
           K++    + L  +  ++E  +  +  L ++  L       L+   E +         + +
Sbjct: 551 KLQL---QQLKEELRQLEDRLQELKELLEELRLLRTRKEELEELRERL---------KEL 598

Query: 389 QALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKA 448
           +   +EL     + EE   +         E E ELE    E    L ++   A+      
Sbjct: 599 KKKLKELEERLSQLEELLQSLEL-----SEAENELEEAEEELESELEKLNLQAELEELLQ 653

Query: 449 GELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQR 508
             LE+    +E   A +++ELQ +E   +  +K          +++  ++E+E+ R+   
Sbjct: 654 AALEELEEKVEELEAEIRRELQRIENEEQLEEKLE--------ELEQLEEELEQLREELE 705

Query: 509 DAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLL-YYKQTQLETM 567
           +   KL  +E  ++++    A ++       ++E  +LEK    L +L     +  L   
Sbjct: 706 ELLKKLGEIEQLIEELESRKAELEEL-----KKELEKLEKALELLEELREKLGKAGLRAD 760

Query: 568 ASEKAAAEF 576
                 A+ 
Sbjct: 761 ILRNLLAQI 769

Length = 908

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 42.1 bits (99), Expect = 0.001
 Identities = 55/271 (20%), Positives = 108/271 (39%), Gaps = 29/271 (10%)

Query: 326 EVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTET 385
           +  K+   L E +    ++IE L   +  L +     E  L +L+          EL E 
Sbjct: 168 KYEKLSELLKEVIKEAKAKIEELEGQLSELLED---IEDLLEALE---------EELKEL 215

Query: 386 RMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERT 445
           + ++ ++EE    E   E E            ER  ELE          AR+  I     
Sbjct: 216 KKLEEIQEEQEEEELEQEIEALE---------ERLAELEEEKERLEELKARLLEIESLEL 266

Query: 446 AKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQ 505
                 E+++  LE       +EL++   RL+  +++  E   +   ++A  +E+E   +
Sbjct: 267 EALKIREEELRELERL----LEELEEKIERLEELEREIEELEEELEGLRALLEELEELLE 322

Query: 506 GQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLE 565
             +  E +L  LE +++K+  E+  +  +    ++     LE+R +EL + L   + +LE
Sbjct: 323 KLKSLEERLEKLEEKLEKLESELEELAEEKNELAK----LLEERLKELEERLEELEKELE 378

Query: 566 TMASEKAAAEFQLEKEMNRLQEVQSEAERSR 596
                    E  +++    L E+ +  E  +
Sbjct: 379 KALERLKQLEEAIQELKEELAELSAALEEIQ 409

Length = 908

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 41.7 bits (98), Expect = 0.001
 Identities = 62/383 (16%), Positives = 145/383 (37%), Gaps = 25/383 (6%)

Query: 216 NSESSLKDADVKVETLSNKRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLA 275
             +  L++   ++  + +   +     ++   + +  L+E +  ++  +   + +   L 
Sbjct: 246 EEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIER-LEELEREIEELE 304

Query: 276 RVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLA 335
               GL + L+E +    +L+ L     +L    E  ++   +EL+  K+E+ K+     
Sbjct: 305 EELEGLRALLEELEELLEKLKSLEERLEKLEEKLEK-LESELEELAEEKNELAKLLEERL 363

Query: 336 EALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREEL 395
           + L  +  E+E  +       KQ   +   L      + + +   +      ++ L +EL
Sbjct: 364 KELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQ----EELEELEKEL 419

Query: 396 ASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMA-----------LARIQRIADER 444
             +ER  EE        +    + E +    A  A                  + + +  
Sbjct: 420 EELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCGQELPEEHEKELLELY 479

Query: 445 TAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERAR 504
             +  ELE++++  E E A L++E++++E  L+        E      ++  +   E   
Sbjct: 480 ELELEELEEELS-REKEEAELREEIEELEKELRE------LEEELIELLELEEALKEELE 532

Query: 505 QGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQL 564
           +     EN L  LE   +K++++    +        +E  EL +  R L      +  +L
Sbjct: 533 EKLEKLENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLL-RTRKEELEEL 591

Query: 565 ETMASEKAAAEFQLEKEMNRLQE 587
                E      +LE+ +++L+E
Sbjct: 592 RERLKELKKKLKELEERLSQLEE 614

Length = 908

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 41.2 bits (97), Expect = 0.002
 Identities = 40/211 (18%), Positives = 83/211 (39%), Gaps = 22/211 (10%)

Query: 391 LREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGE 450
           + E+   +ER   E   A     +   +RE E      E      + + I  +  +   E
Sbjct: 193 IDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEE 252

Query: 451 LEQ---KVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQ-AIQMQAWQDEVERARQG 506
           LE+   +++ LE     ++Q L+++  ++K       EE  +   ++   + E+    + 
Sbjct: 253 LEKLTEEISELEKRLEEIEQLLEELNKKIK---DLGEEEQLRVKEKIGELEAEIASLERS 309

Query: 507 QRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLET 566
             + E +L   E  + K+  E+  +  + E        ELE+   E       ++ + + 
Sbjct: 310 IAEKERELEDAEERLAKLEAEIDKLLAEIE--------ELEREIEE-------ERKRRDK 354

Query: 567 MASEKAAAEFQLEKEMNRLQEVQSEAERSRV 597
           +  E A  + +LE     L+EV  E   +R 
Sbjct: 355 LTEEYAELKEELEDLRAELEEVDKEFAETRD 385

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein

 Score = 41.4 bits (97), Expect = 0.002
 Identities = 50/218 (22%), Positives = 96/218 (44%), Gaps = 44/218 (20%)

Query: 310 EARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASL 369
           E  IK+L+ EL   +    + ES L   ++   S   +L S +  LKK+  +       L
Sbjct: 412 EQDIKKLQAELQQAR----QNESELRNQISLLTSLERSLKSDLGQLKKENDM-------L 460

Query: 370 QMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRA-A 428
           Q  + S++  +        Q  ++ + S+E+R + E                  + R  A
Sbjct: 461 QTKLNSMVSAK--------QKDKQSMQSMEKRLKSEA-----------------DSRVNA 495

Query: 429 EASMALARIQRIADERTAKAGELEQKVAMLEVECA-TLQQELQDMEARLKR--GQKKSPE 485
           E  +A  + ++  +E TA       + A    ECA +L+Q  QD+E  +K+     K  E
Sbjct: 496 EKQLAEEKKRKKEEEETAARAA--AQAAASREECAESLKQAKQDLEMEIKKLEHDLKLKE 553

Query: 486 EANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQK 523
           E  + ++ +A   E+ + ++ +++ E  +S+L+A   K
Sbjct: 554 EECRMLEKEA--QELRKYQESEKETEVLMSALQAMQDK 589

This entry is a highly conserved protein present in eukaryotes. Length = 680

>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

 Score = 41.2 bits (96), Expect = 0.002
 Identities = 48/236 (20%), Positives = 103/236 (43%), Gaps = 9/236 (3%)

Query: 293 AQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEA---LAAKNSEIETLV 349
           A L  L +  R L RS   ++  +  +L   ++E+   +     A     A  SE++   
Sbjct: 57  ATLAILFLLNRNL-RSGVFQLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKAR 115

Query: 350 SSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAH 409
              +A++++ A +  NLA  Q  +  + +  +  +TR+       LA   R+ E +  + 
Sbjct: 116 QEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKT-----LAEQRRQLEAQAQSL 170

Query: 410 NATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQEL 469
            A++        +L+ +  +  +  A+I++ A     +A   + +   L    A  QQ  
Sbjct: 171 QASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQTA 230

Query: 470 QDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMR 525
           Q ++ R  +  +K+ + A +A Q++  + +++R    Q   E +++ LEA  Q   
Sbjct: 231 QAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEAYYQAYV 286

Length = 499

>gnl|CDD|205692 pfam13514, AAA_27, AAA domain

 Score = 40.9 bits (96), Expect = 0.003
 Identities = 40/221 (18%), Positives = 80/221 (36%), Gaps = 14/221 (6%)

Query: 385 TRMIQALREELASVERRAEEERAAH----NATKMAAMEREVELEHRAAEASMALARIQRI 440
              ++     L   E R +E ++A          A +E  +      A A  AL  +Q I
Sbjct: 686 DERLRDAERALEEAEERHDEAQSALEAWQEQWYDALLEAGLGGRASPAGALDALELLQNI 745

Query: 441 ADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQD-- 498
             E+   A +L Q++A +E + A  ++E++ +   +      +P +   A  ++      
Sbjct: 746 -KEKLQAADDLRQRIAAMERDLARFEEEVEALAEAVAPEMLGTPADE-TARALKQRLKRA 803

Query: 499 -----EVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYREL 553
                  E+  +   +AE ++S   A + +    + A+ R A   + EE +   +R    
Sbjct: 804 RDTAAAAEKLAEEIEEAEKEVSEAAAALDEAEARLTALLRAARCTTIEELLAAVERSDTY 863

Query: 554 TDLLYYKQTQLETMASEKAAAEFQ-LEKEMNRLQEVQSEAE 593
            +L         T+         + L  E   L   +  A 
Sbjct: 864 RELRKRIAALERTLVRAGGGLSLEALVAEAAALDPDELPAR 904

This domain is found in a number of double-strand DNA break proteins. This domain contains a P-loop motif. Length = 1118

>gnl|CDD|221952 pfam13166, AAA_13, AAA domain

 Score = 40.8 bits (96), Expect = 0.003
 Identities = 41/186 (22%), Positives = 73/186 (39%), Gaps = 15/186 (8%)

Query: 302 ERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAAL 361
           E      Y+  I+QLE+ +  Y+S + K    L E++     E       ++ LK     
Sbjct: 273 EAHFDEEYQELIEQLEELIDKYESHIEKALEEL-ESILDTEKENSEFKLDVEELKALLEA 331

Query: 362 ----SEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAM 417
                E NL  L+  ++    + EL     I  L E +  +     E    HN  K+  +
Sbjct: 332 LEEILEKNLQKLEEKLKDPSTSIELES---ITDLIESINDIIDAINELIREHNE-KIDNL 387

Query: 418 EREVEL------EHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQD 471
           ++E          H  AE    +   Q+           LE+++  LE E   L++E+++
Sbjct: 388 KKEKNKAKKKLWLHLVAELKEDIDAYQKEKKGLEKAINSLEKEIKQLEAEIKALEKEIKE 447

Query: 472 MEARLK 477
           +E +L 
Sbjct: 448 LEKQLT 453

This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. This family includes the PrrC protein that is thought to be the active component of the anticodon nuclease. Length = 713

>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)

 Score = 40.8 bits (96), Expect = 0.003
 Identities = 44/250 (17%), Positives = 98/250 (39%), Gaps = 16/250 (6%)

Query: 281 LSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAA 340
           L     E  ++  +L E     +E       +++ LE +L   + E+ +  S     LAA
Sbjct: 265 LQHLHGELVADEERLAEEQEERQEAKNRLRQQLRTLEDQLKEARDELNQELSAANAKLAA 324

Query: 341 KNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVER 400
             SE+E L     A +        ++  LQ +++          + + + +   L ++  
Sbjct: 325 DRSELELLEDQKGAFEDA------DIEQLQADLD----QLPSIRSEL-EEVEARLDALTG 373

Query: 401 RAEEERAAHNATKMAAMEREVELEHRAAEASMAL--ARIQRIADERTAKAGELEQKVAML 458
           + ++ +  +   K    E+      +  E   A+   + ++ A           Q    L
Sbjct: 374 KHQDVQRKYERLKQKIKEQLERDLEKNNERLAAIREEKDRQKAAIEEDLQALESQLRQQL 433

Query: 459 EVECATLQQELQDMEARLKR--GQKKSPE-EANQAIQMQAWQDEVERARQGQRDAENKLS 515
           E       +E  ++E RL R   +  S      +  Q++   + +E+A++ Q  AE  + 
Sbjct: 434 EAGKLEFNEEEYELELRLGRLKQRLDSATATPEELEQLEINDEALEKAQEEQEQAEANVE 493

Query: 516 SLEAEVQKMR 525
            L++E++++R
Sbjct: 494 QLQSELRQLR 503

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication. Length = 1198

>gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional

 Score = 40.7 bits (96), Expect = 0.003
 Identities = 51/257 (19%), Positives = 96/257 (37%), Gaps = 29/257 (11%)

Query: 356 KKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMA 415
           ++Q A  +  L  +   +  +       E    QA  + L  V+             +  
Sbjct: 299 RRQLAAEQYRLVEMARELAELNEAESDLEQD-YQAASDHLNLVQ----TALRQQEKIERY 353

Query: 416 AMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQ--ELQDME 473
             + E ELE R  E +  +       +E  A+A   E++V  L+ + A  QQ  ++Q   
Sbjct: 354 QADLE-ELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTR 412

Query: 474 ARLKRGQKKSPEEANQAIQM------------QAWQDEVERARQGQRDAENKLSSLEAEV 521
           A   +   ++ E A Q   +            + +Q + + A +     E KLS  +A  
Sbjct: 413 AIQYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAH 472

Query: 522 QKMRVEMAAMKRDAEHYSREE----HMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQ 577
            +       +++ A   SR E      EL +R RE   L      QL+ +    +  E +
Sbjct: 473 SQFEQAYQLVRKIAGEVSRSEAWDVARELLRRLREQRHLA----EQLQQLRMRLSELEQR 528

Query: 578 LEKEMNRLQEVQSEAER 594
           L ++  R + + +E  +
Sbjct: 529 LRQQ-QRAERLLAEFCK 544

Length = 1486

>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)

 Score = 40.1 bits (94), Expect = 0.004
 Identities = 48/329 (14%), Positives = 117/329 (35%), Gaps = 43/329 (13%)

Query: 250 QDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSY 309
           + +L E     +  +   QS  A+  +    L          NA+LEE   AE E   + 
Sbjct: 602 ETELRERLQQAEEAL---QSAVAKQKQAEEQLVQA-------NAELEEQKRAEAEARTAL 651

Query: 310 EARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLAS- 368
           +     L++  +  +S   K+E  +AE      +++  L + +  L +Q       L   
Sbjct: 652 KQARLDLQRLQNEQQSLKDKLELAIAERKQQAETQLRQLDAQLKQLLEQQQAFLEALKDD 711

Query: 369 ---LQMNMESIMR----NRELTETRMIQALREELASVERRAEE-ERAAHNATK------- 413
              L+    +  +      +    ++  A+       + R +E ++              
Sbjct: 712 FRELRTERLAKWQVVEGELDNQLAQLSAAIEAARTQAKARLKELKKQYDRELASLDVDPN 771

Query: 414 -MAAMEREVE-LEHRAAEASM---ALARIQRIADERTAKAGELEQKVAMLEVECATLQQE 468
            +  ++R++E LE      ++    +   +    E       L ++   L ++   L+  
Sbjct: 772 TVKELKRQIEELETTIERIAVRRPEVREYRAFMQETWLHRDSLREERPNLAIQLRELESS 831

Query: 469 LQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEM 528
            ++++  L R  K            +  + ++E+ R+      ++L  L   ++    ++
Sbjct: 832 AEELQQELTRLIK----------DTKLRRKKLEQERKALEKQLDQLDELLRGLRDEMRQL 881

Query: 529 AAMKRDAEHYSREEHMELEKRYRELTDLL 557
           A +K  A   + +    + +R  +L +  
Sbjct: 882 AELKEPAN--ANQAEGSISERLDQLEEFK 908

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication. Length = 1198

>gnl|CDD|79176 PRK12718, flgL, flagellar hook-associated protein FlgL; Provisional

 Score = 39.8 bits (92), Expect = 0.004
 Identities = 26/93 (27%), Positives = 53/93 (56%), Gaps = 3/93 (3%)

Query: 310 EARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASL 369
           EA + +L+++LS  +  +T  +  LA ALA   S+  ++ S+ DA +KQA   E  L + 
Sbjct: 20  EAAMARLQEQLSSGRRVLTPADDPLAAALAVNVSQTSSMNSNYDANRKQA---EQALGAQ 76

Query: 370 QMNMESIMRNRELTETRMIQALREELASVERRA 402
              ++S+++N +    R+++A    ++  +R+A
Sbjct: 77  TNTLQSVVKNMQEMLKRVVEAGNGTMSDADRQA 109

Length = 510

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	705
PF09787	511	Golgin_A5: Golgin subfamily A member 5; InterPro:	100.0
KOG4677	554	consensus Golgi integral membrane protein [Intrace	99.98
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	99.5
KOG0963	629	consensus Transcription factor/CCAAT displacement	99.16
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	98.98
PF08172	248	CASP_C: CASP C terminal; InterPro: IPR012955 This	98.93
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	98.89
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	98.87
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	98.83
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	98.81
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	98.74
PRK02224	880	chromosome segregation protein; Provisional	98.65
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	98.63
PRK02224	880	chromosome segregation protein; Provisional	98.62
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	98.54
KOG0971	1243	consensus Microtubule-associated protein dynactin	98.54
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	98.54
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	98.53
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	98.51
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	98.5
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	98.45
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	98.44
PF00038	312	Filament: Intermediate filament protein; InterPro:	98.43
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	98.42
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	98.41
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	98.39
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	98.32
PRK03918	880	chromosome segregation protein; Provisional	98.29
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	98.27
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	98.27
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	98.26
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	98.23
KOG0996	1293	consensus Structural maintenance of chromosome pro	98.23
PRK03918	880	chromosome segregation protein; Provisional	98.21
PRK04863	1486	mukB cell division protein MukB; Provisional	98.2
KOG0996	1293	consensus Structural maintenance of chromosome pro	98.2
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	98.19
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	98.18
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	98.1
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	98.07
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	98.04
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	98.04
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	98.01
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	98.0
PF09787	511	Golgin_A5: Golgin subfamily A member 5; InterPro:	97.97
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	97.91
PF00038	312	Filament: Intermediate filament protein; InterPro:	97.88
PRK04863	1486	mukB cell division protein MukB; Provisional	97.84
KOG0933	1174	consensus Structural maintenance of chromosome pro	97.8
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	97.79
KOG4673	961	consensus Transcription factor TMF, TATA element m	97.77
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	97.73
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	97.67
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	97.66
KOG4673	961	consensus Transcription factor TMF, TATA element m	97.62
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	97.61
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	97.52
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	97.47
PF14662	193	CCDC155: Coiled-coil region of CCDC155	97.47
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	97.41
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	97.39
PHA02562	562	46 endonuclease subunit; Provisional	97.37
PHA02562	562	46 endonuclease subunit; Provisional	97.34
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	97.28
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	97.25
KOG0971	1243	consensus Microtubule-associated protein dynactin	97.22
KOG0933	1174	consensus Structural maintenance of chromosome pro	97.18
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	97.18
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	97.15
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	97.11
PRK04778	569	septation ring formation regulator EzrA; Provision	97.1
COG4942	420	Membrane-bound metallopeptidase [Cell division and	97.04
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	97.03
PRK09039	343	hypothetical protein; Validated	97.01
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	97.0
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	96.96
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	96.82
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	96.81
KOG0964	1200	consensus Structural maintenance of chromosome pro	96.76
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	96.75
PRK11281	1113	hypothetical protein; Provisional	96.71
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	96.56
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	96.54
PRK01156	895	chromosome segregation protein; Provisional	96.54
KOG0964	1200	consensus Structural maintenance of chromosome pro	96.53
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	96.5
PRK04778	569	septation ring formation regulator EzrA; Provision	96.48
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	96.44
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	96.43
KOG0018	1141	consensus Structural maintenance of chromosome pro	96.35
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	96.34
PRK01156	895	chromosome segregation protein; Provisional	96.28
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	96.27
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	96.22
PF14662	193	CCDC155: Coiled-coil region of CCDC155	96.2
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	96.08
PF13514	1111	AAA_27: AAA domain	96.04
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	96.03
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	95.99
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	95.97
KOG4677	554	consensus Golgi integral membrane protein [Intrace	95.96
PRK09039	343	hypothetical protein; Validated	95.95
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	95.89
COG4942	420	Membrane-bound metallopeptidase [Cell division and	95.87
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	95.73
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	95.7
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	95.65
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	95.49
KOG2129	552	consensus Uncharacterized conserved protein H4 [Fu	95.41
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	95.28
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	95.19
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	95.19
KOG0982	502	consensus Centrosomal protein Nuf [Cell cycle cont	95.07
PF14992	280	TMCO5: TMCO5 family	94.97
PF07111	739	HCR: Alpha helical coiled-coil rod protein (HCR);	94.96
KOG0963	629	consensus Transcription factor/CCAAT displacement	94.92
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	94.86
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	94.8
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	94.78
PF06705	247	SF-assemblin: SF-assemblin/beta giardin	94.69
COG4372	499	Uncharacterized protein conserved in bacteria with	94.68
KOG0018	1141	consensus Structural maintenance of chromosome pro	94.61
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	94.54
KOG1003	205	consensus Actin filament-coating protein tropomyos	94.51
PF06818	202	Fez1: Fez1; InterPro: IPR009638 This family repres	94.4
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	94.39
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	94.37
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	94.32
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	94.32
PF07111	739	HCR: Alpha helical coiled-coil rod protein (HCR);	94.27
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	94.22
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	94.05
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	93.97
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	93.89
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	93.89
KOG0962	1294	consensus DNA repair protein RAD50, ABC-type ATPas	93.83
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	93.74
PRK10884	206	SH3 domain-containing protein; Provisional	93.54
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	93.51
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	93.46
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	93.41
PF13514	1111	AAA_27: AAA domain	93.35
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	93.25
PRK10929	1109	putative mechanosensitive channel protein; Provisi	93.16
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	93.13
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	93.09
PF15254	861	CCDC14: Coiled-coil domain-containing protein 14	93.0
PRK10929	1109	putative mechanosensitive channel protein; Provisi	93.0
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	92.95
PF10212	518	TTKRSYEDQ: Predicted coiled-coil domain-containing	92.93
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	92.89
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	92.59
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	92.45
KOG1003	205	consensus Actin filament-coating protein tropomyos	92.35
PF05010	207	TACC: Transforming acidic coiled-coil-containing p	92.35
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	92.1
KOG1853	333	consensus LIS1-interacting protein NUDE [Cytoskele	91.99
PLN03188	1320	kinesin-12 family protein; Provisional	91.81
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	91.73
KOG0982	502	consensus Centrosomal protein Nuf [Cell cycle cont	91.67
PF05010	207	TACC: Transforming acidic coiled-coil-containing p	91.66
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	91.53
COG4372	499	Uncharacterized protein conserved in bacteria with	91.41
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	91.18
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	91.09
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	90.78
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	90.57
KOG4360	596	consensus Uncharacterized coiled coil protein [Fun	90.14
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	89.96
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	89.85
KOG0249	916	consensus LAR-interacting protein and related prot	89.82
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	89.69
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	89.62
KOG4360	596	consensus Uncharacterized coiled coil protein [Fun	89.59
PRK15178	434	Vi polysaccharide export inner membrane protein Ve	89.44
COG2433	652	Uncharacterized conserved protein [Function unknow	89.17
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	88.96
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	88.7
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	88.68
PRK10884	206	SH3 domain-containing protein; Provisional	88.43
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	88.34
KOG1937	521	consensus Uncharacterized conserved protein [Funct	88.02
PF15397	258	DUF4618: Domain of unknown function (DUF4618)	88.01
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	87.87
COG2433	652	Uncharacterized conserved protein [Function unknow	87.73
PF15397	258	DUF4618: Domain of unknown function (DUF4618)	87.56
PF06785	401	UPF0242: Uncharacterised protein family (UPF0242);	87.56
PF12240	205	Angiomotin_C: Angiomotin C terminal; InterPro: IPR	87.47
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	87.28
TIGR03017	444	EpsF chain length determinant protein EpsF. Sequen	87.26
PF10205	102	KLRAQ: Predicted coiled-coil domain-containing pro	86.91
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	86.81
TIGR03017	444	EpsF chain length determinant protein EpsF. Sequen	86.36
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	86.1
PF05335	188	DUF745: Protein of unknown function (DUF745); Inte	86.1
COG4913	1104	Uncharacterized protein conserved in bacteria [Fun	86.09
KOG0249	916	consensus LAR-interacting protein and related prot	86.06
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	86.02
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	84.99
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	84.67
COG1842	225	PspA Phage shock protein A (IM30), suppresses sigm	84.41
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	84.37
TIGR01010	362	BexC_CtrB_KpsE polysaccharide export inner-membran	84.05
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	84.0
KOG1853	333	consensus LIS1-interacting protein NUDE [Cytoskele	83.93
KOG4593	716	consensus Mitotic checkpoint protein MAD1 [Cell cy	83.87
PF10186	302	Atg14: UV radiation resistance protein and autopha	83.26
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	83.08
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	82.04
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	81.05
KOG0288	459	consensus WD40 repeat protein TipD [General functi	81.04
PF15066	527	CAGE1: Cancer-associated gene protein 1 family	80.08

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure

Probab=100.00  E-value=2e-32  Score=308.21  Aligned_cols=373  Identities=26%  Similarity=0.338  Sum_probs=253.3

Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH--------------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259          271 EARLARVCAGLSSRLQEYKSENAQLEELLVA--------------ERELSRSYEARIKQLEQELSVYKSEVTKVESNLAE  336 (705)
Q Consensus       271 e~qLa~~~~RLrk~~~elks~~aqLEell~e--------------l~e~~~~L~~rl~~LQaeL~~EQ~~l~q~es~~~e  336 (705)
                      .+++++++++|.+..++++....+|+++-++              +....+.|.+++..|+.++......+......|..
T Consensus       108 ~~e~a~lk~~l~e~~~El~~l~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~sL~ekl~lld~al~~~~~~~~~~~~~fl~  187 (511)
T PF09787_consen  108 SSELAVLKIRLQELDQELRRLRRQLEELQNEKSRILSDESTVSRLQNGAPRSLQEKLSLLDEALKREDGNAITAVVEFLK  187 (511)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCccHHHHHHHHHH
Confidence            4499999999999999999999999997111              11124888889999999999999999999999999


Q ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh----------HHHHHHHHHHHHHHHHHHHHHH-H
Q 005259          337 ALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL----------TETRMIQALREELASVERRAEE-E  405 (705)
Q Consensus       337 alsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~----------~ekeilqSLE~eLkslq~~le~-E  405 (705)
                      +...++..+..|+.+.. +...+........+++...+.++.....          ++..+++++++.|.+|+.+... .
T Consensus       188 rtl~~e~~~~~L~~~~~-A~~~~~~~l~~~~e~~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~~~  266 (511)
T PF09787_consen  188 RTLKKEIERQELEERPK-ALRHYIEYLRESGELQEQLELLKAEGESEEAELQQYKQKAQRILQSKEKLIESLKEGCLEEG  266 (511)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccc
Confidence            99999999999999888 4456666666777776666665555544          3788999999999999984333 1


Q ss_pred             HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcccCCh
Q 005259          406 RAAHNA-TKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSP  484 (705)
Q Consensus       406 ~~aH~a-Tk~ea~~Re~eLEee~~eLseALaelQrkLeEe~aea~eLeqQls~LE~elkqLkQeLq~lE~e~~r~qek~~  484 (705)
                      ...+.. ...+      .|..+..-+.+-+..++..+.+-+.++.+++.++   ..+.+.+++....+..........  
T Consensus       267 ~~~~~~~~el~------~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~---~~~~~~~~~~~~~~~~~~~~~~~~--  335 (511)
T PF09787_consen  267 FDSSTNSIELE------ELKQERDHLQEEIQLLERQIEQLRAELQDLEAQL---EGEQESFREQPQELSQQLEPELTT--  335 (511)
T ss_pred             cccccchhcch------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHhch--
Confidence            221111 1111      1222222223333344444444444443333322   222333333333333333333322  


Q ss_pred             HHHH---HHHHHHHHHHHHHHHHhhhHHHHhhhhhHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHH
Q 005259          485 EEAN---QAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQ  561 (705)
Q Consensus       485 ~ea~---q~~qL~~Lk~EL~~~rq~qr~l~~kl~s~E~elqkLr~e~~~~k~q~~els~q~~~elE~rl~eLtE~L~eKQ  561 (705)
                       +++   ....+..+..++.+.   ...+..++...+.|+++|+.++..--      +.....++|.|++.||+.|++||
T Consensus       336 -e~e~~l~~~el~~~~ee~~~~---~s~~~~k~~~ke~E~q~lr~~l~~~~------~~s~~~elE~rl~~lt~~Li~KQ  405 (511)
T PF09787_consen  336 -EAELRLYYQELYHYREELSRQ---KSPLQLKLKEKESEIQKLRNQLSARA------SSSSWNELESRLTQLTESLIQKQ  405 (511)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHh---cChHHHHHHHHHHHHHHHHHHHHHHh------ccCCcHhHHHHHhhccHHHHHHH
Confidence             111   111233344444322   23357788899999999999996522      12334799999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccC--CCCcccchhhhccccCCCCCCCcCccchhhhHHHHHHH
Q 005259          562 TQLETMASEKAAAEFQLEKEMNRLQEVQSEAERSRVSRRS--WSSWEEDAEMKSLENNGRPLPLHHRHIAGASVQLQKAA  639 (705)
Q Consensus       562 ~qlE~L~~Er~sL~~qLE~~~~~~~~e~~~~~~sr~sr~~--~~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~vk~Aa  639 (705)
                      +++|.|.+||++|.+|||++...+++..   ...+.+...  +..+.+|.... +.    .+....+|.++++++|++||
T Consensus       406 ~~lE~l~~ek~al~lqlErl~~~l~~~~---~~~~~~~~~~~~~~~~~d~~~r-~~----~~~~~~~~d~~~~~r~~~a~  477 (511)
T PF09787_consen  406 TQLESLGSEKNALRLQLERLETQLKEEA---SNNRPSSILMKYSNSEDDAESR-VP----LLMKDSPHDIGVARRVKRAA  477 (511)
T ss_pred             HHHHHHHhhhhhccccHHHHHHHHHhhc---cCCCCchhhHhhccCCCchhhh-hh----hhccCCCccchHHHHHHHHH
Confidence            9999999999999999999999999721   112222221  22344444443 22    22233445568999999999


Q ss_pred             hHhhhhhhhhhHhhhcchhHHHHHHHHHHHHHHH
Q 005259          640 KLLDSGAVRATRFLWRYPIARIILLFYLVFVHLF  673 (705)
Q Consensus       640 ~~lDs~slr~g~fLRRyP~ARl~vlvYmvlLHLW  673 (705)
                      ++||+|+||+|+||||||++|+||||||++||||
T Consensus       478 ~~iD~~~ir~g~fLrr~p~~R~~~i~Y~~~LhlW  511 (511)
T PF09787_consen  478 SVIDSFSIRLGIFLRRYPMARIFVIIYMALLHLW  511 (511)
T ss_pred             HHHhHhhHHHHHHHhcCHHHHHHHHHHHHHHcCC
Confidence            9999999999999999999999999999999999

They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].

>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]

Probab=99.98  E-value=4e-29  Score=267.99  Aligned_cols=375  Identities=17%  Similarity=0.152  Sum_probs=240.4

Q ss_pred             CCchhhhhHHHHHHHHHhhhhhcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 005259          245 PPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYK  324 (705)
Q Consensus       245 k~~~lqkQLee~n~~LrsE~eal~~ke~qLa~~~~RLrk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ  324 (705)
                      +|+.....-+.+  ..+..++.-..|++||   ++||++..+.++.++..||..     .-...|++++.-+++.+.+.+
T Consensus       157 ~~a~d~~~s~~~--q~~d~~e~~~~kdSQl---kvrlqe~~~ll~~Rve~le~~-----Sal~~lq~~L~la~~~~~~~~  226 (554)
T KOG4677|consen  157 SYAPDLGRSKGE--QYRDYSEDWSPKDSQL---KVRLQEVRRLLKGRVESLERF-----SALRSLQDKLQLAEEAVSMHD  226 (554)
T ss_pred             hcccccccchhh--hHhhHhhhcccchhhH---HHHHHHHHHHHHhhhHHHHHH-----HHHHHHHHHHHHHHHHHHhhh
Confidence            444444333333  5677888889999999   999999999999999999996     345678889999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH--H---HHHhhh---HHHHHHHHHHHHHH
Q 005259          325 SEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMES--I---MRNREL---TETRMIQALREELA  396 (705)
Q Consensus       325 ~~l~q~es~~~ealsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~r--l---~e~l~~---~ekeilqSLE~eLk  396 (705)
                      +.+.++...|..++-.++.++.++.+-++-+...+-..|.++.+.+...+-  +   ++++.+   .+..|+++.++   
T Consensus       227 e~~i~~~~~f~~r~~~~E~e~rn~~E~~~lA~r~l~~~kKe~de~k~~~~l~~~l~~keeL~~s~~~e~~i~qs~~k---  303 (554)
T KOG4677|consen  227 ENVITAVLIFLKRTLSKEIEFRNELEVRQLALRHLIHFKKEIDEQKLLLDLFRFLDRKEELALSHYREHLIIQSPDK---  303 (554)
T ss_pred             hhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhccCCCCc---
Confidence            999999999999999999999999999999999999999999998887655  2   233333   24555555443   


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH----HHHHHH
Q 005259          397 SVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQ----QELQDM  472 (705)
Q Consensus       397 slq~~le~E~~aH~aTk~ea~~Re~eLEee~~eLseALaelQrkLeEe~aea~eLeqQls~LE~elkqLk----QeLq~l  472 (705)
                      +.--+.+.|...          .+..+..+-             ++-....+-.|+.++..+|+....+.    ..+...
T Consensus       304 stas~~E~ee~r----------ve~~~s~ed-------------~~~~q~q~~~Lrs~~~d~EAq~r~l~s~~~~q~~~~  360 (554)
T KOG4677|consen  304 STASRKEFEETR----------VELPFSAED-------------SAHIQDQYTLLRSQIIDIEAQDRHLESAGQTQIFRK  360 (554)
T ss_pred             chhHHHHHHHHH----------hcccccHHH-------------HHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHh
Confidence            111111111111          111111111             01111222333444333333222221    111111


Q ss_pred             HHHHHHcccCChHHHHHHHHHHHHHHHHHHHHh----hhHHHHhhhhhHHHHHHHHHHHHHHhhhhhcccchhhhHHHHH
Q 005259          473 EARLKRGQKKSPEEANQAIQMQAWQDEVERARQ----GQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEK  548 (705)
Q Consensus       473 E~e~~r~qek~~~ea~q~~qL~~Lk~EL~~~rq----~qr~l~~kl~s~E~elqkLr~e~~~~k~q~~els~q~~~elE~  548 (705)
                      ..++.-...-......   .++.+.-|..-..+    ..-....+|-..+.++++|++++..   .|  ..+ ....+++
T Consensus       361 h~~ka~~~~~~~~l~~---~~ec~~~e~e~~~~~~~r~~~~~qski~dk~~el~kl~~~l~~---r~--~~~-s~~~l~~  431 (554)
T KOG4677|consen  361 HPRKASILNMPLVLTL---FYECFYHETEAEGTFSSRVNLKKQSKIPDKQYELTKLAARLKL---RA--WND-SVDALFT  431 (554)
T ss_pred             hhHhhhhhhchHHHHH---HHHHHHHHHHHhhhhhhhccchhhccCcchHHHHHHHHHHHHH---Hh--hhh-hHHHHhc
Confidence            1111111100000110   11222221111100    0112356778899999999998743   11  122 2467889


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCcccchhhhccccC--C--CCCCCc
Q 005259          549 RYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQSEAERSRVSRRSWSSWEEDAEMKSLENN--G--RPLPLH  624 (705)
Q Consensus       549 rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~e~~~~~~sr~sr~~~~~~~~d~~~~~~~~~--~--~~~p~~  624 (705)
                      +.+.||+.|++||.++|.+..+++.|.++||++....-                  .+.+.+++...|+  +  +.+|..
T Consensus       432 ~~~qLt~tl~qkq~~le~v~~~~~~ln~~lerLq~~~N------------------~~~~v~~~~~~n~~~~~~~~v~~l  493 (554)
T KOG4677|consen  432 TKNQLTYTLKQKQIGLERVVEILHKLNAPLERLQEYVN------------------LVEDVDTKLNLNTKFKCHDVVIDL  493 (554)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhc------------------cccccceeeccCCCcccccccchH
Confidence            99999999999999999999999999999999875321                  1111222221111  0  011111


Q ss_pred             CccchhhhHHHHHHHhHhhhhhhhhhHhhhcchhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005259          625 HRHIAGASVQLQKAAKLLDSGAVRATRFLWRYPIARIILLFYLVFVHLFLMYLLHRLQE  683 (705)
Q Consensus       625 ~~~~~~~~~~vk~Aa~~lDs~slr~g~fLRRyP~ARl~vlvYmvlLHLWVm~VL~~~~~  683 (705)
                      -+.+-.+ .++++|++.||+|+++++.|||+||.||||+++||++|||||||||++|||
T Consensus       494 ~~d~~~~-~q~r~a~s~VD~~s~~l~~~lr~~psArif~~~YmallHLWvmivlLTYTP  551 (554)
T KOG4677|consen  494 YRDLKDR-QQLRAARSKVDKGSAELEKILRLLPSARIFWKNYMALLHLWVMIVLLTYTP  551 (554)
T ss_pred             hhhhhhh-HHHHHHHhhcchhhHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence            1112233 799999999999999999999999999999999999999999999999999

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=99.50  E-value=9.3e-12  Score=147.61  Aligned_cols=319  Identities=15%  Similarity=0.141  Sum_probs=241.8

Q ss_pred             hhhcCCCCchhhhhHHHHHHHHHhhhhhcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 005259          239 ALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQ  318 (705)
Q Consensus       239 ~~~~~ek~~~lqkQLee~n~~LrsE~eal~~ke~qLa~~~~RLrk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQa  318 (705)
                      ..-.++|.+++.++|++++..+++|++.           +.+|++..+++.+++.++++..+.+.+++..|+.....|-.
T Consensus       534 ~~~~~~kv~~~rk~le~~~~d~~~e~~~-----------~~kl~~~~~e~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~  602 (1317)
T KOG0612|consen  534 AADSLEKVNSLRKQLEEAELDMRAESED-----------AGKLRKHSKELSKQIQQELEENRDLEDKLSLLEESKSKLSK  602 (1317)
T ss_pred             HHHHHhhHHHHHHHHHHhhhhhhhhHHH-----------HhhHhhhhhhhhHHHHHHhhccccHHHHHHHHHHHHHHHHH
Confidence            3445789999999999999999999995           99999999999999999999999999999999987777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHH
Q 005259          319 ELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTET-RMIQALREELAS  397 (705)
Q Consensus       319 eL~~EQ~~l~q~es~~~ealsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ek-eilqSLE~eLks  397 (705)
                      +...++........    ........+.+++.++..|+......+..+.+++...+..++.++++++ .+..-++.+++.
T Consensus       603 ~~~~~~~~~e~~~~----~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~el~r~~~e~~~~~ek~~~e~~~e~~lk~  678 (1317)
T KOG0612|consen  603 ENKKLRSELEKERR----QRTEISEIIAELKEEISSLEETLKAGKKELLKVEELKRENQERISDSEKEALEIKLERKLKM  678 (1317)
T ss_pred             HHHHHHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77666665555444    2233667788999999999999999999999999988888888888877 446677799999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhHHHHHHHHHHHHH
Q 005259          398 VERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERT-------AKAGELEQKVAMLEVECATLQQELQ  470 (705)
Q Consensus       398 lq~~le~E~~aH~aTk~ea~~Re~eLEee~~eLseALaelQrkLeEe~-------aea~eLeqQls~LE~elkqLkQeLq  470 (705)
                      +++.++++..+|+.++..  .+           ...+++++..+.+++       +.+..+..++++|.+++.+.++.++
T Consensus       679 ~q~~~eq~~~E~~~~~L~--~~-----------e~~~~e~~~~lseek~ar~k~e~~~~~i~~e~e~L~~d~~~~~~~~~  745 (1317)
T KOG0612|consen  679 LQNELEQENAEHHRLRLQ--DK-----------EAQMKEIESKLSEEKSAREKAENLLLEIEAELEYLSNDYKQSQEKLN  745 (1317)
T ss_pred             HHHHHHHHHHHHHHHHHh--hH-----------HHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhhhhhhccchh
Confidence            999999999999888332  22           455677777777777       3346788999999999999999998


Q ss_pred             HHHHHHHHcccCChHHHHHHHHHHH----HHHHHHHHHhh--hHHHHhhhhhHHHHHHHHHHHHH-----------Hhhh
Q 005259          471 DMEARLKRGQKKSPEEANQAIQMQA----WQDEVERARQG--QRDAENKLSSLEAEVQKMRVEMA-----------AMKR  533 (705)
Q Consensus       471 ~lE~e~~r~qek~~~ea~q~~qL~~----Lk~EL~~~rq~--qr~l~~kl~s~E~elqkLr~e~~-----------~~k~  533 (705)
                      .++.........+..+..++++...    ++.||....+.  .+.++.+..++..++..++.+++           .+.+
T Consensus       746 ~l~r~~~~~~~~vl~Lq~~LEqe~~~r~~~~~eLssq~~~~~t~~~Ekq~~~~~~~l~~~K~~~e~~~~q~~~~~~~~~~  825 (1317)
T KOG0612|consen  746 ELRRSKDQLITEVLKLQSMLEQEISKRLSLQRELKSQEQEVNTKMLEKQLKKLLDELAELKKQLEEENAQLRGLNRSAWG  825 (1317)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchh
Confidence            8888877777655555544443111    23333311111  03345555556666665555553           2234


Q ss_pred             hhcccchhh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259          534 DAEHYSREE------HMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEV  588 (705)
Q Consensus       534 q~~els~q~------~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~e  588 (705)
                      +++.++.++      +..|++++.+..+...+|.   ++++.|+-.+..|.+.+.+.++++
T Consensus       826 ~~k~lq~~leae~~~~~~~ktq~~e~~e~~~ek~---~~~~~er~~~~~Q~~~~~~~~~~~  883 (1317)
T KOG0612|consen  826 QMKELQDQLEAEQCFSSLMKTQIIEDREEIAEKN---QSLQAERMLLPKQVEQAVTKADSE  883 (1317)
T ss_pred             hhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcc---cchhhhhhhcchhcchhhchhhhH
Confidence            556666666      4567999999999999997   888999999999999888777766

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=99.16  E-value=2.3e-07  Score=105.49  Aligned_cols=143  Identities=15%  Similarity=0.222  Sum_probs=89.3

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 005259          301 AERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNR  380 (705)
Q Consensus       301 el~e~~~~L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l  380 (705)
                      ..+++...+...+..||..+..-+..+...++.+.+...++.+++.-+...+..++..+..+..+.+.+..+......+.
T Consensus       193 ~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~  272 (629)
T KOG0963|consen  193 NLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSK  272 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            44455666777888888899999999999998888888889999888887766666666666666666555543333222


Q ss_pred             hh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259          381 EL-------TETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADE  443 (705)
Q Consensus       381 ~~-------~ekeilqSLE~eLkslq~~le~E~~aH~aTk~ea~~Re~eLEee~~eLseALaelQrkLeE  443 (705)
                      ..       .....+..++.++..|=..++....+|...+..-......|+.....+...+.++..+|+.
T Consensus       273 ~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~  342 (629)
T KOG0963|consen  273 KLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLNS  342 (629)
T ss_pred             hhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            21       2334455566666666666655555555555444444555555554444444444444443

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=98.98  E-value=2e-05  Score=96.53  Aligned_cols=8  Identities=13%  Similarity=0.334  Sum_probs=3.2

Q ss_pred             HHHHHHHH
Q 005259          671 HLFLMYLL  678 (705)
Q Consensus       671 HLWVm~VL  678 (705)
                      +-++.|+|
T Consensus       613 ~~~~~~~l  620 (1164)
T TIGR02169       613 EPAFKYVF  620 (1164)
T ss_pred             HHHHHHHC
Confidence            33344443

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins

Probab=98.93  E-value=4.1e-08  Score=102.49  Aligned_cols=49  Identities=20%  Similarity=0.380  Sum_probs=45.4

Q ss_pred             HHHHhHhhhhhhhhhHhhhcchhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005259          636 QKAAKLLDSGAVRATRFLWRYPIARIILLFYLVFVHLFLMYLLHRLQEQ  684 (705)
Q Consensus       636 k~Aa~~lDs~slr~g~fLRRyP~ARl~vlvYmvlLHLWVm~VL~~~~~~  684 (705)
                      ..-++.+|++.+.+|+|+..++.+|.|||||+|+||+|||++|+++.+.
T Consensus       195 ~~~L~~~eR~~ls~~r~vL~nr~~R~~f~~Y~l~LH~lvf~~l~~~~~~  243 (248)
T PF08172_consen  195 YKRLSPPERIFLSLTRFVLSNRTTRMLFFFYCLGLHLLVFFVLYYMSHS  243 (248)
T ss_pred             HhcCChHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            5668889999999999999999999999999999999999999986654

These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=98.89  E-value=4.2e-05  Score=93.64  Aligned_cols=10  Identities=30%  Similarity=0.248  Sum_probs=3.9

Q ss_pred             hhhHhhhcch
Q 005259          648 RATRFLWRYP  657 (705)
Q Consensus       648 r~g~fLRRyP  657 (705)
                      .+-.||+.+.
T Consensus       562 ~~i~~l~~~~  571 (1164)
T TIGR02169       562 EAIELLKRRK  571 (1164)
T ss_pred             HHHHHHHhcC
Confidence            3333444333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=98.87  E-value=3.1e-05  Score=98.62  Aligned_cols=156  Identities=21%  Similarity=0.298  Sum_probs=79.3

Q ss_pred             CCCCchhhhhHHHHHHHHHhhhhhcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 005259          243 DDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSV  322 (705)
Q Consensus       243 ~ek~~~lqkQLee~n~~LrsE~eal~~ke~qLa~~~~RLrk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~  322 (705)
                      +.|.++.-+.+++.++.|.+.+.....|-.+|...+.+|...+.++.....+=..       ..-.++..+..|+.+|..
T Consensus       980 ~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~-------~r~e~Ek~~rkle~el~~ 1052 (1930)
T KOG0161|consen  980 ISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKR-------IRMELEKAKRKLEGELKD 1052 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence            3444444445555555555555444444455555555554444444333222222       222233344445555544


Q ss_pred             HHHHHH---HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh------HHHHHHHHHHH
Q 005259          323 YKSEVT---KVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL------TETRMIQALRE  393 (705)
Q Consensus       323 EQ~~l~---q~es~~~ealsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~------~ekeilqSLE~  393 (705)
                      .|+...   .....+...+..+..++..|..++......+..+...+.+++....-|.++++.      +.++...-|..
T Consensus      1053 ~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ 1132 (1930)
T KOG0161|consen 1053 LQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSE 1132 (1930)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444333   222355556666666666666666666666666555555555555555555554      12233666666


Q ss_pred             HHHHHHHHHHHH
Q 005259          394 ELASVERRAEEE  405 (705)
Q Consensus       394 eLkslq~~le~E  405 (705)
                      +|..++.+++..
T Consensus      1133 ele~l~~~Lee~ 1144 (1930)
T KOG0161|consen 1133 ELEELKEELEEQ 1144 (1930)
T ss_pred             HHHHHHHHHHHH
Confidence            677776666654

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=98.83  E-value=0.00011  Score=89.81  Aligned_cols=25  Identities=24%  Similarity=0.227  Sum_probs=10.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259          549 RYRELTDLLYYKQTQLETMASEKAA  573 (705)
Q Consensus       549 rl~eLtE~L~eKQ~qlE~L~~Er~s  573 (705)
                      ++..|...+...+..+..+......
T Consensus       462 ~~~~l~~~~~~~~~~~~~l~~~~~~  486 (1179)
T TIGR02168       462 ALEELREELEEAEQALDAAERELAQ  486 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444433333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=98.81  E-value=0.00013  Score=93.31  Aligned_cols=39  Identities=18%  Similarity=0.181  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259          547 EKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRL  585 (705)
Q Consensus       547 E~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~  585 (705)
                      ...+.+|.+++.+.+..-..+..++..|......+...+
T Consensus      1188 ~~~~~el~~qle~l~~~k~~lekek~~lq~e~~~l~~ev 1226 (1930)
T KOG0161|consen 1188 ADSLAELQEQLEQLQKDKAKLEKEKSDLQREIADLAAEL 1226 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566666666666555555555555555444444433

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=98.74  E-value=0.00042  Score=79.42  Aligned_cols=72  Identities=25%  Similarity=0.246  Sum_probs=44.6

Q ss_pred             hhhhHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259          513 KLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEV  588 (705)
Q Consensus       513 kl~s~E~elqkLr~e~~~~k~q~~els~q~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~e  588 (705)
                      .++.-..+.++|+.++...+..    ......+..+.|.+|...|.--|..-|.|..|+.-|..-.++++.|++..
T Consensus       386 ~lqEer~E~qkL~~ql~ke~D~----n~vqlsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~~~  457 (546)
T PF07888_consen  386 HLQEERMERQKLEKQLGKEKDC----NRVQLSENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLDKV  457 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3444556667777777432211    11123455566666777666666677778888888887777777777664

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PRK02224 chromosome segregation protein; Provisional

Probab=98.65  E-value=0.0022  Score=77.51  Aligned_cols=13  Identities=8%  Similarity=0.033  Sum_probs=5.6

Q ss_pred             HHHHHHHHHHHHH
Q 005259          517 LEAEVQKMRVEMA  529 (705)
Q Consensus       517 ~E~elqkLr~e~~  529 (705)
                      +..++..++.++.
T Consensus       625 ~~~~l~~~r~~i~  637 (880)
T PRK02224        625 RRERLAEKRERKR  637 (880)
T ss_pred             HHHHHHHHHHHHH
Confidence            3344444444443

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=98.63  E-value=0.00041  Score=82.79  Aligned_cols=73  Identities=19%  Similarity=0.355  Sum_probs=56.5

Q ss_pred             HHhhhhhHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259          510 AENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQ  589 (705)
Q Consensus       510 l~~kl~s~E~elqkLr~e~~~~k~q~~els~q~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~e~  589 (705)
                      +...|...+.++..+..++.....+        ..++..+|.-|.+.|-.|+...+-|.++..+|+++|+...+.+..-.
T Consensus       292 ~~~eL~rk~~E~~~~qt~l~~~~~~--------~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~  363 (775)
T PF10174_consen  292 LKLELSRKKSELEALQTRLETLEEQ--------DSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQ  363 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh--------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            4555566777777777777554433        25678899999999999999999999999999999999887776655


Q ss_pred             H
Q 005259          590 S  590 (705)
Q Consensus       590 ~  590 (705)
                      +
T Consensus       364 ~  364 (775)
T PF10174_consen  364 A  364 (775)
T ss_pred             H
Confidence            4

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PRK02224 chromosome segregation protein; Provisional

Probab=98.62  E-value=0.0018  Score=78.23  Aligned_cols=37  Identities=11%  Similarity=0.151  Sum_probs=15.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 005259          342 NSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMR  378 (705)
Q Consensus       342 ~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e  378 (705)
                      ...+..++.++..+..++...+..+.+++.+.+.+..
T Consensus       264 ~~~i~~~e~~~~~l~~~i~~~~~~~~~le~e~~~l~~  300 (880)
T PRK02224        264 RETIAETEREREELAEEVRDLRERLEELEEERDDLLA  300 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333334444444444444444444443333333

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=98.54  E-value=0.0023  Score=78.07  Aligned_cols=185  Identities=19%  Similarity=0.184  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH---------
Q 005259          290 SENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAA---------  360 (705)
Q Consensus       290 s~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le~rl~~Le~el~---------  360 (705)
                      .++.-.++.+....++.+.|.+.+.+++.+|...|....+....    +.....+...|.....-+..+..         
T Consensus       494 ~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~----~~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~  569 (1317)
T KOG0612|consen  494 HEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADS----LEKVNSLRKQLEEAELDMRAESEDAGKLRKHS  569 (1317)
T ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHhhhhhhhhHHHHhhHhhhh
Confidence            33333444444444455555555555665555554444443321    11223333333333222222222         


Q ss_pred             -HHHhHHHHHHHHHHHHHHHhhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259          361 -LSEGNLASLQMNMESIMRNRELTETR--MIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARI  437 (705)
Q Consensus       361 -~~K~rleele~E~~rl~e~l~~~eke--ilqSLE~eLkslq~~le~E~~aH~aTk~ea~~Re~eLEee~~eLseALael  437 (705)
                       .....+.....+.+.+.+.+.+++..  .+.-..+.+.+.....-.....|.....++..+..+|++.+.....-+...
T Consensus       570 ~e~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~  649 (1317)
T KOG0612|consen  570 KELSKQIQQELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEETLKAGKKELLKV  649 (1317)
T ss_pred             hhhhHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHH
Confidence             22222222222333444444443222  222222333333333333344555556666666666666553222222222


Q ss_pred             HHHHHHHH-HHHHHHHH--HHHhHHHHHHHHHHHHHHHHHHHHHc
Q 005259          438 QRIADERT-AKAGELEQ--KVAMLEVECATLQQELQDMEARLKRG  479 (705)
Q Consensus       438 QrkLeEe~-aea~eLeq--Qls~LE~elkqLkQeLq~lE~e~~r~  479 (705)
                      +. +..+. ....+.++  .-..++..++.+.++++.+..+++++
T Consensus       650 ~e-l~r~~~e~~~~~ek~~~e~~~e~~lk~~q~~~eq~~~E~~~~  693 (1317)
T KOG0612|consen  650 EE-LKRENQERISDSEKEALEIKLERKLKMLQNELEQENAEHHRL  693 (1317)
T ss_pred             HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22 11111 11122222  12224555566666666666666666

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=98.54  E-value=0.0039  Score=74.03  Aligned_cols=119  Identities=21%  Similarity=0.225  Sum_probs=61.9

Q ss_pred             hhhhHHHHHHHHHhhhhhcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 005259          249 EQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVT  328 (705)
Q Consensus       249 lqkQLee~n~~LrsE~eal~~ke~qLa~~~~RLrk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ~~l~  328 (705)
                      |.-|+.++-.+|.+=-       .+-++.+.||++ +..++-.+.+|++       --..+......||.+|.+.+-+..
T Consensus       229 Lr~QvrdLtEkLetlR-------~kR~EDk~Kl~E-lekmkiqleqlqE-------fkSkim~qqa~Lqrel~raR~e~k  293 (1243)
T KOG0971|consen  229 LRAQVRDLTEKLETLR-------LKRAEDKAKLKE-LEKMKIQLEQLQE-------FKSKIMEQQADLQRELKRARKEAK  293 (1243)
T ss_pred             HHHHHHHHHHHHHHHH-------hhhhhhHHHHHH-HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555554321       122234666654 2334444444444       334455667778888877776666


Q ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHH
Q 005259          329 KVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETR  386 (705)
Q Consensus       329 q~es~~~ealsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~eke  386 (705)
                      ..+.    .-+.-..++.++.+.+..+.-+-...+.|.+.+|.+...++++++.++..
T Consensus       294 eaqe----~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletd  347 (1243)
T KOG0971|consen  294 EAQE----AKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETD  347 (1243)
T ss_pred             HHHH----HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6553    22224445555555444444444444555566666666655555554444

>TIGR00606 rad50 rad50

Probab=98.54  E-value=0.0018  Score=81.98  Aligned_cols=29  Identities=7%  Similarity=-0.098  Sum_probs=10.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259          550 YRELTDLLYYKQTQLETMASEKAAAEFQL  578 (705)
Q Consensus       550 l~eLtE~L~eKQ~qlE~L~~Er~sL~~qL  578 (705)
                      +..|+-.-.....++..+..+...|..+|
T Consensus      1063 ~~~l~~~~a~l~g~~k~le~qi~~l~~eL 1091 (1311)
T TIGR00606      1063 IDLIKRNHVLALGRQKGYEKEIKHFKKEL 1091 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333333333

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=98.53  E-value=0.0048  Score=77.35  Aligned_cols=98  Identities=21%  Similarity=0.292  Sum_probs=43.4

Q ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhHHHHHHHHHHHHHH
Q 005259          278 CAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKV-ESNLAEALAAKNSEIETLVSSIDALK  356 (705)
Q Consensus       278 ~~RLrk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ~~l~q~-es~~~ealsak~~eie~Le~rl~~Le  356 (705)
                      ..++..-..++..+...|+.. .+.-.+...|..++..++..+...+-..... -..+.+.++.....+.++...+....
T Consensus       188 l~~~~~~~~el~~~l~~L~~q-~~~a~~y~~l~~e~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~  266 (1163)
T COG1196         188 LERLEDLLEELEKQLEKLERQ-AEKAERYQELKAELRELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAE  266 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555555555555542 1222233444444444443333222111111 12344444444445555555555555


Q ss_pred             HHHHHHHhHHHHHHHHHHHH
Q 005259          357 KQAALSEGNLASLQMNMESI  376 (705)
Q Consensus       357 ~el~~~K~rleele~E~~rl  376 (705)
                      .++..++.++.++..+...+
T Consensus       267 ~~i~~~~~~~~e~~~~~~~~  286 (1163)
T COG1196         267 KEIEELKSELEELREELEEL  286 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            55555555555555554444

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=98.51  E-value=0.0054  Score=70.57  Aligned_cols=45  Identities=16%  Similarity=0.034  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259          544 MELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEV  588 (705)
Q Consensus       544 ~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~e  588 (705)
                      .+|+..++-+--+-.+-+...+.|.....-|+.+|+..--..-++
T Consensus       420 ~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~~~~~~~~~~  464 (546)
T PF07888_consen  420 QELKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLDKVADEKWKE  464 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Confidence            456665555555555556666777888888888888765433333

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=98.50  E-value=0.0049  Score=77.25  Aligned_cols=38  Identities=24%  Similarity=0.286  Sum_probs=19.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259          547 EKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNR  584 (705)
Q Consensus       547 E~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~  584 (705)
                      ..++..+...+...+..+..+..+...+..+|..+.+.
T Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~  496 (1163)
T COG1196         459 RDRLKELERELAELQEELQRLEKELSSLEARLDRLEAE  496 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444455555555555555555555554443

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=98.45  E-value=0.0087  Score=70.42  Aligned_cols=79  Identities=15%  Similarity=0.245  Sum_probs=45.0

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcccCChHHHHHHHHHHH--HHHHHHHHHhhhHHHHhhhhhHHHHHHHHHH
Q 005259          449 GELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQA--WQDEVERARQGQRDAENKLSSLEAEVQKMRV  526 (705)
Q Consensus       449 ~eLeqQls~LE~elkqLkQeLq~lE~e~~r~qek~~~ea~q~~qL~~--Lk~EL~~~rq~qr~l~~kl~s~E~elqkLr~  526 (705)
                      .-|...++..++-++.++.+|+.++.-..+.-.. ..++.++..+..  ++.+..++|...-.++.+...+...++.|.+
T Consensus       280 s~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gd-seqatkylh~enmkltrqkadirc~LlEarrk~egfddk~~eLEK  358 (1265)
T KOG0976|consen  280 SVLGDELSQKEELVKELQEELDTLKQTRTRADGD-SEQATKYLHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEK  358 (1265)
T ss_pred             HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Confidence            4455555666777777777777777655555422 223333333333  4555556666655555566666666666666


Q ss_pred             HH
Q 005259          527 EM  528 (705)
Q Consensus       527 e~  528 (705)
                      +.
T Consensus       359 kr  360 (1265)
T KOG0976|consen  359 KR  360 (1265)
T ss_pred             HH
Confidence            55

>TIGR00606 rad50 rad50

Probab=98.44  E-value=0.0043  Score=78.59  Aligned_cols=18  Identities=0%  Similarity=-0.031  Sum_probs=7.1

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 005259          556 LLYYKQTQLETMASEKAA  573 (705)
Q Consensus       556 ~L~eKQ~qlE~L~~Er~s  573 (705)
                      ++.+...++..|.+.++.
T Consensus      1055 e~~~l~~~~~~l~~~~a~ 1072 (1311)
T TIGR00606      1055 EHQKLEENIDLIKRNHVL 1072 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            333333444444443333

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=98.43  E-value=0.0041  Score=66.36  Aligned_cols=32  Identities=22%  Similarity=0.280  Sum_probs=15.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259          544 MELEKRYRELTDLLYYKQTQLETMASEKAAAE  575 (705)
Q Consensus       544 ~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~  575 (705)
                      ..++..+..|+..+.......+.|..-+-+|.
T Consensus       265 ~~le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld  296 (312)
T PF00038_consen  265 AELEEELAELREEMARQLREYQELLDVKLALD  296 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hccchhHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            34444445555555444444455444444333

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=98.42  E-value=0.0011  Score=75.93  Aligned_cols=84  Identities=13%  Similarity=0.214  Sum_probs=50.1

Q ss_pred             HHHHHHHHhhhHHHHhhhhhHHHHHHHHHHHHHHhhhhhcccchh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259          497 QDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSRE---EHMELEKRYRELTDLLYYKQTQLETMASEKAA  573 (705)
Q Consensus       497 k~EL~~~rq~qr~l~~kl~s~E~elqkLr~e~~~~k~q~~els~q---~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~s  573 (705)
                      .+||...|...-.+.++++.+|.....|.+++..+.-+.++....   .-.+.+..+..|+++|-.--..++.|..=+-+
T Consensus       295 rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~~mReec~~l~~Elq~LlD~ki~  374 (546)
T KOG0977|consen  295 REELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQRSFEQALNDKDAEIAKMREECQQLSVELQKLLDTKIS  374 (546)
T ss_pred             HHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhchHhH
Confidence            466666666666666777666666666666665555444332222   23444666666777776666666666666666


Q ss_pred             HHHHHHH
Q 005259          574 AEFQLEK  580 (705)
Q Consensus       574 L~~qLE~  580 (705)
                      |...+..
T Consensus       375 Ld~EI~~  381 (546)
T KOG0977|consen  375 LDAEIAA  381 (546)
T ss_pred             HHhHHHH
Confidence            6555544

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=98.41  E-value=0.00034  Score=72.57  Aligned_cols=223  Identities=19%  Similarity=0.223  Sum_probs=130.0

Q ss_pred             CCchhhhhHHHHHHHHHhhhhhcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 005259          245 PPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYK  324 (705)
Q Consensus       245 k~~~lqkQLee~n~~LrsE~eal~~ke~qLa~~~~RLrk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ  324 (705)
                      |+..++.++|++...+..--..|...+.    ...+.......+..++..||+-|....+++.....++..++..+....
T Consensus         2 K~~~l~~eld~~~~~~~~~~~~l~~~~~----~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~e   77 (237)
T PF00261_consen    2 KIQQLKDELDEAEERLEEAEEKLKEAEK----RAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESE   77 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHC
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556666666665555443322111111    233455566677778888888777777777888888888888888887


Q ss_pred             HHHHHHHH---HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 005259          325 SEVTKVES---NLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERR  401 (705)
Q Consensus       325 ~~l~q~es---~~~ealsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~  401 (705)
                      ..+..+++   ...+++...+..+.........++..+.....++.-++.++.++-++....+.+ +..|+.+|..+.+.
T Consensus        78 r~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~k-i~eLE~el~~~~~~  156 (237)
T PF00261_consen   78 RARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESK-IKELEEELKSVGNN  156 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchh-HHHHHHHHHHHHHH
Confidence            77777775   334444455555555555556666666666666667777777777777766776 67777777766665


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 005259          402 AEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARL  476 (705)
Q Consensus       402 le~E~~aH~aTk~ea~~Re~eLEee~~eLseALaelQrkLeEe~aea~eLeqQls~LE~elkqLkQeLq~lE~e~  476 (705)
                      +..    .......+..|+..++.....|..-+.++....+..-.++..|+.++..|+.++...+.+...+..++
T Consensus       157 lk~----lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~el  227 (237)
T PF00261_consen  157 LKS----LEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEEL  227 (237)
T ss_dssp             HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHH----hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            532    22233444555555555554444444444444444444444444444444444444444443333333

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=98.39  E-value=0.01  Score=68.51  Aligned_cols=96  Identities=26%  Similarity=0.345  Sum_probs=58.9

Q ss_pred             HHHHHHHHHhhhHHHHhhhhhHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259          496 WQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAE  575 (705)
Q Consensus       496 Lk~EL~~~rq~qr~l~~kl~s~E~elqkLr~e~~~~k~q~~els~q~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~  575 (705)
                      .+.++..+++.-......+.+++.++.+++.++.......... ......+-..+..++.+..+-...++....|..-+.
T Consensus       321 ~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~-k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k  399 (522)
T PF05701_consen  321 EKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKA-KEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAK  399 (522)
T ss_pred             HHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcch-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555555555555556666777777777777775544322110 112345566667777777777777777777777777


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 005259          576 FQLEKEMNRLQEVQSEA  592 (705)
Q Consensus       576 ~qLE~~~~~~~~e~~~~  592 (705)
                      ..++.+...+......+
T Consensus       400 ~E~e~~ka~i~t~E~rL  416 (522)
T PF05701_consen  400 EEAEQTKAAIKTAEERL  416 (522)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            77777666666655433

Several sequences in this family are described as being myosin heavy chain-like.

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=98.32  E-value=0.016  Score=68.30  Aligned_cols=190  Identities=17%  Similarity=0.221  Sum_probs=96.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
Q 005259          383 TETRMIQALREELASVERRAEEERAAHNAT--KMAAMEREVELEHRAAEASMALARIQRIADERT-------AKAGELEQ  453 (705)
Q Consensus       383 ~ekeilqSLE~eLkslq~~le~E~~aH~aT--k~ea~~Re~eLEee~~eLseALaelQrkLeEe~-------aea~eLeq  453 (705)
                      +.++ +.-++...+.++..++.+.+....+  +.+....  -++.++-.+..-.+.++..|-|++       .+..+|++
T Consensus       282 L~~E-lSqkeelVk~~qeeLd~lkqt~t~a~gdseqatk--ylh~enmkltrqkadirc~LlEarrk~egfddk~~eLEK  358 (1265)
T KOG0976|consen  282 LGDE-LSQKEELVKELQEELDTLKQTRTRADGDSEQATK--YLHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEK  358 (1265)
T ss_pred             Hhhh-hhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Confidence            4555 5555555666666555544321111  1111111  123334334444445555555555       45579999


Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHcccCChHHHHH-HHHHHHHHHHHHHHHhh---hHHHHhhhhhHHHHHHHHHHHHH
Q 005259          454 KVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQ-AIQMQAWQDEVERARQG---QRDAENKLSSLEAEVQKMRVEMA  529 (705)
Q Consensus       454 Qls~LE~elkqLkQeLq~lE~e~~r~qek~~~ea~q-~~qL~~Lk~EL~~~rq~---qr~l~~kl~s~E~elqkLr~e~~  529 (705)
                      +..|+..+...+++.+...+.++.++..    ++.. -+|+..++.-+-.+.+.   .+.++..|+...+.+..|...+.
T Consensus       359 krd~al~dvr~i~e~k~nve~elqsL~~----l~aerqeQidelKn~if~~e~~~~dhe~~kneL~~a~ekld~mgthl~  434 (1265)
T KOG0976|consen  359 KRDMALMDVRSIQEKKENVEEELQSLLE----LQAERQEQIDELKNHIFRLEQGKKDHEAAKNELQEALEKLDLMGTHLS  434 (1265)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHhHHHH
Confidence            9999999999999999888888888763    2221 12333343333222222   22234444545555555555443


Q ss_pred             Hhhhhhcccch-------------hhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 005259          530 AMKRDAEHYSR-------------EEHMELEKRYRELTDLLYYKQ---TQLETMASEKAAAEFQLE  579 (705)
Q Consensus       530 ~~k~q~~els~-------------q~~~elE~rl~eLtE~L~eKQ---~qlE~L~~Er~sL~~qLE  579 (705)
                      ....|..+.+.             .-++++=.+|+.|.+.|.-+-   .+++.|..|..--..+++
T Consensus       435 mad~Q~s~fk~Lke~aegsrrraIeQcnemv~rir~l~~sle~qrKVeqe~emlKaen~rqakkie  500 (1265)
T KOG0976|consen  435 MADYQLSNFKVLKEHAEGSRRRAIEQCNEMVDRIRALMDSLEKQRKVEQEYEMLKAENERQAKKIE  500 (1265)
T ss_pred             HHHHHHhhHHHHHHhhhhhHhhHHHHHHHHHHHHHHHhhChhhhcchHHHHHHHHHHHHHHHHHHH
Confidence            33322211110             114566667777777665433   445555554444333433

>PRK03918 chromosome segregation protein; Provisional

Probab=98.29  E-value=0.024  Score=68.49  Aligned_cols=14  Identities=7%  Similarity=-0.014  Sum_probs=6.4

Q ss_pred             hHhhhcchhHHHHH
Q 005259          650 TRFLWRYPIARIIL  663 (705)
Q Consensus       650 g~fLRRyP~ARl~v  663 (705)
                      ..++.--|++-+=.
T Consensus       814 ~~lilDEp~~~lD~  827 (880)
T PRK03918        814 PLLILDEPTPFLDE  827 (880)
T ss_pred             CeEEEeCCCcccCH
Confidence            33444455554433

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=98.27  E-value=0.017  Score=69.46  Aligned_cols=124  Identities=23%  Similarity=0.345  Sum_probs=84.5

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-------HHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhhHHHHHHH
Q 005259          280 GLSSRLQEYKSENAQLEELLVAERELSRSYEA-------RIKQLEQELSVYKSEVTKVES---NLAEALAAKNSEIETLV  349 (705)
Q Consensus       280 RLrk~~~elks~~aqLEell~el~e~~~~L~~-------rl~~LQaeL~~EQ~~l~q~es---~~~ealsak~~eie~Le  349 (705)
                      .|...+..-.+.+..||..|+.+.+-...|..       ....+..+|...+.....+++   ...-.|+.++.++..|.
T Consensus       228 alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~q  307 (775)
T PF10174_consen  228 ALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQ  307 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555555556666666666665555555544       344555566666666666663   45556778888888888


Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 005259          350 SSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEE  404 (705)
Q Consensus       350 ~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le~  404 (705)
                      .++..+......++..++.+..++......-+.+... +..|+++|......++.
T Consensus       308 t~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsd-ve~Lr~rle~k~~~l~k  361 (775)
T PF10174_consen  308 TRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSD-VEALRFRLEEKNSQLEK  361 (775)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHH
Confidence            8888888888888888888888888877777777777 67777776666655544

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=98.27  E-value=0.0031  Score=65.59  Aligned_cols=49  Identities=18%  Similarity=0.251  Sum_probs=39.3

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259          541 EEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQ  589 (705)
Q Consensus       541 q~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~e~  589 (705)
                      +....|+.+|+.|++.|.+-...++.+......|..++..+...+....
T Consensus       169 ~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k  217 (237)
T PF00261_consen  169 EREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEK  217 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3357788888888888888888888888888888888888877766654

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=98.26  E-value=0.031  Score=71.60  Aligned_cols=222  Identities=18%  Similarity=0.284  Sum_probs=125.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHH
Q 005259          306 SRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTET  385 (705)
Q Consensus       306 ~~~L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ek  385 (705)
                      -..++.+|..|+.+|...+..+....+.+.+-....+-.+.+....+..+..++......+..++.....+...++.+++
T Consensus       800 k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k  879 (1822)
T KOG4674|consen  800 KDKCESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEK  879 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555689999999999998888888777777777777888888888888888888888888888888888888888777


Q ss_pred             HHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH----H
Q 005259          386 RMIQALREELASVER------------RAEEERAAHNATKMAAMEREVEL---EHRAAEASMALARIQRIADERT----A  446 (705)
Q Consensus       386 eilqSLE~eLkslq~------------~le~E~~aH~aTk~ea~~Re~eL---Eee~~eLseALaelQrkLeEe~----a  446 (705)
                      + +.+.......+..            .+..+...|..++......+..+   ++.....++++..+-..+++=+    +
T Consensus       880 ~-l~~~~~~~~~l~~~~~~~d~~~~~~~Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~s~eqsl~~~ks~lde~~~~~ea  958 (1822)
T KOG4674|consen  880 R-LKSAKTQLLNLDSKSSNEDATILEDTLRKELEEITDLKEELTDALSQIREYQEEYSSLEQSLESVKSELDETRLELEA  958 (1822)
T ss_pred             H-HHHhHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            7 5555544333332            22233333333333333332222   2233334444444444444443    2


Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcccCChH-HHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhHHHHHHHHH
Q 005259          447 KAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPE-EANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMR  525 (705)
Q Consensus       447 ea~eLeqQls~LE~elkqLkQeLq~lE~e~~r~qek~~~-ea~q~~qL~~Lk~EL~~~rq~qr~l~~kl~s~E~elqkLr  525 (705)
                      +...+..++..++.++-.|+.++..+..++...-+.... ...+..++..++.|+..++.....+...+..+..++....
T Consensus       959 ~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~~~k~~e~~~~~~~~e~~sl~ne~~~~~~~~s~~~~~~~~~k~dl~~~~ 1038 (1822)
T KOG4674|consen  959 KIESLHKKITSLEEELSELEKEIENLREELELSTKGKEDKLLDLSREISSLQNELKSLLKAASQANEQIEDLQNDLKTET 1038 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            223444444444444444444444444444333222111 2333445566666666655555444444444555544444


Q ss_pred             HHH
Q 005259          526 VEM  528 (705)
Q Consensus       526 ~e~  528 (705)
                      ..|
T Consensus      1039 ~~~ 1041 (1822)
T KOG4674|consen 1039 EQL 1041 (1822)
T ss_pred             HHH
Confidence            444

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=98.23  E-value=0.045  Score=70.16  Aligned_cols=100  Identities=13%  Similarity=0.216  Sum_probs=64.5

Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 005259          270 KEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLV  349 (705)
Q Consensus       270 ke~qLa~~~~RLrk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le  349 (705)
                      .+.=+.+.-..|++....+++.+..++.-+.-..++...|...+..+.++..........++    ..+...+..+..+.
T Consensus       655 ~~~~l~e~~~~l~~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~~l~----~~i~~~~q~~~~~s  730 (1822)
T KOG4674|consen  655 NLKKLQEDFDSLQKEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKEEVETLEERNKNLQ----STISKQEQTVHTLS  730 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence            34445555666667777777777777776666667777777777766666665554444333    34445566666777


Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHH
Q 005259          350 SSIDALKKQAALSEGNLASLQMNM  373 (705)
Q Consensus       350 ~rl~~Le~el~~~K~rleele~E~  373 (705)
                      ..+..+...++.+...++.+-.|+
T Consensus       731 ~eL~~a~~k~~~le~ev~~LKqE~  754 (1822)
T KOG4674|consen  731 QELLSANEKLEKLEAELSNLKQEK  754 (1822)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHH
Confidence            777777777777777777776664

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=98.23  E-value=0.028  Score=68.82  Aligned_cols=61  Identities=18%  Similarity=0.254  Sum_probs=33.5

Q ss_pred             HHHHHHhhhHHHHhhhhhHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259          499 EVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAA  574 (705)
Q Consensus       499 EL~~~rq~qr~l~~kl~s~E~elqkLr~e~~~~k~q~~els~q~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL  574 (705)
                      +|..+......+..++.+.+.++.+++++.               ..+..+++.+++.+++.-..+.........|
T Consensus       543 ~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~---------------~~~~~~~~~~rqrveE~ks~~~~~~s~~kVl  603 (1293)
T KOG0996|consen  543 ELDDLKEELPSLKQELKEKEKELPKLRKEE---------------RNLKSQLNKLRQRVEEAKSSLSSSRSRNKVL  603 (1293)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHhHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence            343333333334445555666666666665               3344566777777776666665555544444

>PRK03918 chromosome segregation protein; Provisional

Probab=98.21  E-value=0.036  Score=67.10  Aligned_cols=27  Identities=11%  Similarity=0.485  Sum_probs=12.1

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 005259          451 LEQKVAMLEVECATLQQELQDMEARLK  477 (705)
Q Consensus       451 LeqQls~LE~elkqLkQeLq~lE~e~~  477 (705)
                      +..++..+......++..+..++..+.
T Consensus       403 l~~~i~~l~~~~~~~~~~i~eL~~~l~  429 (880)
T PRK03918        403 IEEEISKITARIGELKKEIKELKKAIE  429 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444433

>PRK04863 mukB cell division protein MukB; Provisional

Probab=98.20  E-value=0.034  Score=71.23  Aligned_cols=186  Identities=17%  Similarity=0.168  Sum_probs=100.0

Q ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 005259          277 VCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALK  356 (705)
Q Consensus       277 ~~~RLrk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le~rl~~Le  356 (705)
                      ..++.+++..+..+.....|..+.+..+....+..++..|+.+....+.-+...+. +.    .....+..+...+..+.
T Consensus       287 EAag~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~ee-~l----r~q~ei~~l~~~LeELe  361 (1486)
T PRK04863        287 EALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQT-AL----RQQEKIERYQADLEELE  361 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH----HHHHHHHHHHHHHHHHH
Confidence            34666677777777777777777777777777788888888887776654433332 11    11233334444444444


Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Q 005259          357 KQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRA---------  427 (705)
Q Consensus       357 ~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le~E~~aH~aTk~ea~~Re~eLEee~---------  427 (705)
                      .++......++++..+...+..++...+.+ +..++..+..+++.+..-...    ..........++.++         
T Consensus       362 e~Lee~eeeLeeleeeleeleeEleelEee-LeeLqeqLaelqqel~elQ~e----l~q~qq~i~~Le~~~~~~~~~~~S  436 (1486)
T PRK04863        362 ERLEEQNEVVEEADEQQEENEARAEAAEEE-VDELKSQLADYQQALDVQQTR----AIQYQQAVQALERAKQLCGLPDLT  436 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhCCCCCC
Confidence            444444444444444444444444444444 444444444443333321111    111111223333332         


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 005259          428 -AEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDM  472 (705)
Q Consensus       428 -~eLseALaelQrkLeEe~aea~eLeqQls~LE~elkqLkQeLq~l  472 (705)
                       .+|...+...+.++.+....+.++++++..++..++++++....+
T Consensus       437 dEeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l  482 (1486)
T PRK04863        437 ADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLV  482 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             345555666666666666777777777777776666666555443

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=98.20  E-value=0.031  Score=68.51  Aligned_cols=46  Identities=24%  Similarity=0.301  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259          544 MELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQ  589 (705)
Q Consensus       544 ~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~e~  589 (705)
                      ..++.-|..+..++.++.+.+..+..+-..+..+|-.+..++.+..
T Consensus       545 ~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~k  590 (1293)
T KOG0996|consen  545 DDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAK  590 (1293)
T ss_pred             HHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445566666667777777777777777777777777666655543

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=98.19  E-value=0.013  Score=69.85  Aligned_cols=220  Identities=18%  Similarity=0.270  Sum_probs=99.6

Q ss_pred             hHHHHHHHHHhhhhhcchHHHHHHHH-------HhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 005259          252 QLDEAQGLLKTTISTGQSKEARLARV-------CAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYK  324 (705)
Q Consensus       252 QLee~n~~LrsE~eal~~ke~qLa~~-------~~RLrk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ  324 (705)
                      .|+.-..+||++..+.-.-|..|.--       --.|+-.++.++..+.+|+..++.+......=...+..||.-|..|+
T Consensus       422 rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~  501 (697)
T PF09726_consen  422 RLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEER  501 (697)
T ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56666677777754433333333322       22334444444444444444333222211111123455555555555


Q ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHH----HHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 005259          325 SEVTKVESNLAEALAAKNSEIETLVSS----IDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVER  400 (705)
Q Consensus       325 ~~l~q~es~~~ealsak~~eie~Le~r----l~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~  400 (705)
                      ..+...+..+.+.-.++..+-+.-...    -..-.+--..+|.|..+++.|.++|..++-.++.+ +..++.++..++.
T Consensus       502 ~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~-~~~~e~~~~~lr~  580 (697)
T PF09726_consen  502 RQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQ-IRELESELQELRK  580 (697)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence            555555543332211111111100000    00000123346777777777777777777777777 6667766644443


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 005259          401 RAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARL  476 (705)
Q Consensus       401 ~le~E~~aH~aTk~ea~~Re~eLEee~~eLseALaelQrkLeEe~aea~eLeqQls~LE~elkqLkQeLq~lE~e~  476 (705)
                      -- .|  .|..+. .++.-+.-|++.+.-|...|++-.|.-.+=..-..+.++|++.++..+..--++|.+++..+
T Consensus       581 ~~-~e--~~~~~e-~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki  652 (697)
T PF09726_consen  581 YE-KE--SEKDTE-VLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKI  652 (697)
T ss_pred             HH-hh--hhhhHH-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            21 11  111111 13334445555555555555554444444444445555555555544444444444444333

; GO: 0016021 integral to membrane

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=98.18  E-value=0.058  Score=68.14  Aligned_cols=15  Identities=20%  Similarity=0.113  Sum_probs=6.6

Q ss_pred             cccccccccCCCCcc
Q 005259          189 AGQITKSADADAPLK  203 (705)
Q Consensus       189 ~~~~~~~~~~~~~~~  203 (705)
                      .++.=+..|++....
T Consensus       188 ~~vln~~~~~d~iK~  202 (1201)
T PF12128_consen  188 NAVLNKKLDFDFIKN  202 (1201)
T ss_pred             HHHHhccccHHHHHH
Confidence            444444444444433

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=98.10  E-value=0.024  Score=66.75  Aligned_cols=58  Identities=17%  Similarity=0.107  Sum_probs=38.0

Q ss_pred             CchhhhhHHHHHHHHHhhhhhcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 005259          246 PTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAER  303 (705)
Q Consensus       246 ~~~lqkQLee~n~~LrsE~eal~~ke~qLa~~~~RLrk~~~elks~~aqLEell~el~  303 (705)
                      +.+++..-|+....|+.+.-.++.|-.+|...+..|++.-.....++..||..|..++
T Consensus         6 l~qlq~Erd~ya~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk   63 (617)
T PF15070_consen    6 LKQLQAERDQYAQQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELK   63 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4456666666666667666666666667777777777776666666666666555544

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=98.07  E-value=0.0035  Score=74.48  Aligned_cols=56  Identities=16%  Similarity=0.224  Sum_probs=30.9

Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHH
Q 005259          331 ESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETR  386 (705)
Q Consensus       331 es~~~ealsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~eke  386 (705)
                      +.+++.+++...+--..+..+|..+..+...+..++..+...+++=++.+..+|++
T Consensus       441 E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkr  496 (697)
T PF09726_consen  441 EQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKR  496 (697)
T ss_pred             HHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455554444444445566666666666666666666666655544444444444

; GO: 0016021 integral to membrane

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.04  E-value=0.021  Score=67.23  Aligned_cols=145  Identities=15%  Similarity=0.208  Sum_probs=79.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcccCChHHHHHHHHHHH----
Q 005259          420 EVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQA----  495 (705)
Q Consensus       420 e~eLEee~~eLseALaelQrkLeEe~aea~eLeqQls~LE~elkqLkQeLq~lE~e~~r~qek~~~ea~q~~qL~~----  495 (705)
                      +..|.....+|+.-|....-.+.-.+..++++..++..+-.+..+++++|+.+...+-++-......-.++-+...    
T Consensus       446 letLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~  525 (1118)
T KOG1029|consen  446 LETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKE  525 (1118)
T ss_pred             HHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccC
Confidence            3334444444555555555566666667777777777777777777777777766665554211111111111111    


Q ss_pred             ---HHHHHHHHHhhhHHHHhhhhhHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q 005259          496 ---WQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMAS-EK  571 (705)
Q Consensus       496 ---Lk~EL~~~rq~qr~l~~kl~s~E~elqkLr~e~~~~k~q~~els~q~~~elE~rl~eLtE~L~eKQ~qlE~L~~-Er  571 (705)
                         -+++|+.++..+..++..   +++.+..|.++.+.-..++        .-+..|+.+|++.+..+|.+.+.+.. ++
T Consensus       526 ~~~~~s~L~aa~~~ke~irq~---ikdqldelskE~esk~~ei--------di~n~qlkelk~~~~~q~lake~~yk~e~  594 (1118)
T KOG1029|consen  526 TTQRKSELEAARRKKELIRQA---IKDQLDELSKETESKLNEI--------DIFNNQLKELKEDVNSQQLAKEELYKNER  594 (1118)
T ss_pred             cchHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhh--------hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               234555544444333222   3334444444443322222        45677888899999888888887766 55


Q ss_pred             HHHH
Q 005259          572 AAAE  575 (705)
Q Consensus       572 ~sL~  575 (705)
                      .-+.
T Consensus       595 d~~k  598 (1118)
T KOG1029|consen  595 DKLK  598 (1118)
T ss_pred             HHHH
Confidence            5554

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=98.04  E-value=0.074  Score=64.44  Aligned_cols=170  Identities=19%  Similarity=0.212  Sum_probs=89.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 005259          308 SYEARIKQLEQELSVYKSEVTKVES---NLAEAL--AAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL  382 (705)
Q Consensus       308 ~L~~rl~~LQaeL~~EQ~~l~q~es---~~~eal--sak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~  382 (705)
                      .+.+|+..|...-...+++...++.   .+..+.  .+.+.+|=.|...+..|..+......+++++..|+..++=.-..
T Consensus       261 fykdRveelkedN~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~q~eq  340 (1195)
T KOG4643|consen  261 FYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQVQKEQ  340 (1195)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            3555666676666666666555554   222222  34556666666777777777777777777777776655432222


Q ss_pred             ----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHH
Q 005259          383 ----------------TETRMIQALREELASVERRAEEERAAHNATKMAAMEREVEL----------EHRAAEASMALAR  436 (705)
Q Consensus       383 ----------------~ekeilqSLE~eLkslq~~le~E~~aH~aTk~ea~~Re~eL----------Eee~~eLseALae  436 (705)
                                      .+..-++.....|.+ -..+..+...|+-|..=-+.+..+.          +.+..-|+.-..+
T Consensus       341 L~~~~ellq~~se~~E~en~Sl~~e~eqLts-~ralkllLEnrrlt~tleelqsss~Ee~~SK~leleke~KnLs~k~e~  419 (1195)
T KOG4643|consen  341 LDGQMELLQIFSENEELENESLQVENEQLTS-DRALKLLLENRRLTGTLEELQSSSYEELISKHLELEKEHKNLSKKHEI  419 (1195)
T ss_pred             hhhhhhHhhhhhcchhhhhhhHHHHHHHhhh-HHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhHhHHHHH
Confidence                            112212223333443 2356666666666544333333333          3333344444555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 005259          437 IQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKR  478 (705)
Q Consensus       437 lQrkLeEe~aea~eLeqQls~LE~elkqLkQeLq~lE~e~~r  478 (705)
                      ++..+.+......+|+.-..+|-.+.+.+.++......-+.+
T Consensus       420 Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~r  461 (1195)
T KOG4643|consen  420 LEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSR  461 (1195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            555555555555555555555555555555555444443333

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=98.01  E-value=0.064  Score=67.73  Aligned_cols=16  Identities=25%  Similarity=0.405  Sum_probs=6.8

Q ss_pred             HHHHHHHHHHHHHhhh
Q 005259          492 QMQAWQDEVERARQGQ  507 (705)
Q Consensus       492 qL~~Lk~EL~~~rq~q  507 (705)
                      ++..+..++..+++..
T Consensus       470 ~~~~~~~~~~~a~~~~  485 (1201)
T PF12128_consen  470 QLEQADKRLEQAQEQQ  485 (1201)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3344444444444333

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=98.00  E-value=0.031  Score=64.57  Aligned_cols=279  Identities=19%  Similarity=0.234  Sum_probs=159.0

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 005259          280 GLSSRLQEYKSENAQLEELLVAERELSRSYEAR--------IKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSS  351 (705)
Q Consensus       280 RLrk~~~elks~~aqLEell~el~e~~~~L~~r--------l~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le~r  351 (705)
                      -|-.++.-|--+++.||..++.|..-...|+..        ..--+.++...+..+...           ......++..
T Consensus        46 ~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~-----------~~~ra~~e~e  114 (546)
T KOG0977|consen   46 ELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDET-----------ARERAKLEIE  114 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHH-----------HHHHHHHHHH
Confidence            344455555556666666666555555444441        112233333322222222           2234466777


Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259          352 IDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEAS  431 (705)
Q Consensus       352 l~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le~E~~aH~aTk~ea~~Re~eLEee~~eLs  431 (705)
                      +..|..++..++.++++.+........++.+.... +..++.++..++.+...           ...-+..|-.++.-+-
T Consensus       115 i~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~-l~~leAe~~~~krr~~~-----------le~e~~~Lk~en~rl~  182 (546)
T KOG0977|consen  115 ITKLREELKELRKKLEKAEKERRGAREKLDDYLSR-LSELEAEINTLKRRIKA-----------LEDELKRLKAENSRLR  182 (546)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhh-hhhhhhHHHHHHHHHHH-----------HHHHHHHHHHHhhhhH
Confidence            88888888888888888888888887777777777 77777777766655432           2224445566677777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH----HHHHHHHHHHHHcc-cCChH-----HHHHHHHHHH-HHHHH
Q 005259          432 MALARIQRIADERTAKAGELEQKVAMLEVECATLQ----QELQDMEARLKRGQ-KKSPE-----EANQAIQMQA-WQDEV  500 (705)
Q Consensus       432 eALaelQrkLeEe~aea~eLeqQls~LE~elkqLk----QeLq~lE~e~~r~q-ek~~~-----ea~q~~qL~~-Lk~EL  500 (705)
                      ..|..+.+.++.+..--.++.-++..|..++.-++    ++|......+.+-- .....     ++..+.++++ ...-+
T Consensus       183 ~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~~  262 (546)
T KOG0977|consen  183 EELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYFKNELALAIREIRAQYEAIS  262 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            77888888888888666666666666666665555    44544444333333 11111     1211222222 11112


Q ss_pred             HHHHhhhHH-HHhhhhhHH--------------HHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHH---------
Q 005259          501 ERARQGQRD-AENKLSSLE--------------AEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDL---------  556 (705)
Q Consensus       501 ~~~rq~qr~-l~~kl~s~E--------------~elqkLr~e~~~~k~q~~els~q~~~elE~rl~eLtE~---------  556 (705)
                      .+-|+..+. ++.+|....              +++..+|..+..+..++.++. .....|+++|..|.-+         
T Consensus       263 ~~nR~diE~~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE-~~n~~L~~~I~dL~~ql~e~~r~~e  341 (546)
T KOG0977|consen  263 RQNRKDIESWYKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELE-SRNSALEKRIEDLEYQLDEDQRSFE  341 (546)
T ss_pred             HHhHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhcccc-ccChhHHHHHHHHHhhhhhhhhhhh
Confidence            222222211 234444444              556666666655555544432 2245666777776655         


Q ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259          557 --LYYKQTQLETMASEKAAAEFQLEKEM  582 (705)
Q Consensus       557 --L~eKQ~qlE~L~~Er~sL~~qLE~~~  582 (705)
                        |..|.+.+..|-.|...|..+|+.+.
T Consensus       342 ~~L~~kd~~i~~mReec~~l~~Elq~Ll  369 (546)
T KOG0977|consen  342 QALNDKDAEIAKMREECQQLSVELQKLL  369 (546)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence              56677888888889999988888876

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure

Probab=97.97  E-value=0.0083  Score=69.01  Aligned_cols=139  Identities=19%  Similarity=0.227  Sum_probs=110.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259          341 KNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL---TETRMIQALREELASVERRAEEERAAHNATKMAAM  417 (705)
Q Consensus       341 k~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~---~ekeilqSLE~eLkslq~~le~E~~aH~aTk~ea~  417 (705)
                      ...+...|..++..+.+++..++..+..++.+..++......   +..+...+|...|.-++.++..+...+..+...++
T Consensus       107 l~~e~a~lk~~l~e~~~El~~l~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~sL~ekl~lld~al~~~~~~~~~~~~~fl  186 (511)
T PF09787_consen  107 LSSELAVLKIRLQELDQELRRLRRQLEELQNEKSRILSDESTVSRLQNGAPRSLQEKLSLLDEALKREDGNAITAVVEFL  186 (511)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCccHHHHHHHHH
Confidence            344555666777777777888888888876665555544443   23333588888899999999999888888999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcc
Q 005259          418 EREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQ  480 (705)
Q Consensus       418 ~Re~eLEee~~eLseALaelQrkLeEe~aea~eLeqQls~LE~elkqLkQeLq~lE~e~~r~q  480 (705)
                      .|..+++.....|.+... +...+.....+..++..++.++.......+++|.+|+....+..
T Consensus       187 ~rtl~~e~~~~~L~~~~~-A~~~~~~~l~~~~e~~~~l~l~~~~~~~~~~el~~Yk~kA~~iL  248 (511)
T PF09787_consen  187 KRTLKKEIERQELEERPK-ALRHYIEYLRESGELQEQLELLKAEGESEEAELQQYKQKAQRIL  248 (511)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence            999999988999999998 45578888899999999999999999999999999997666554

They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.91  E-value=0.041  Score=64.91  Aligned_cols=165  Identities=12%  Similarity=0.167  Sum_probs=88.2

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259          359 AALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQ  438 (705)
Q Consensus       359 l~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le~E~~aH~aTk~ea~~Re~eLEee~~eLseALaelQ  438 (705)
                      +.-.+.|..++.+++.+=++.+-- .+..+..|..+|++|...+.+-..           |+.+..--....-+.+..+.
T Consensus       411 lewErar~qem~~Qk~reqe~iv~-~nak~~ql~~eletLn~k~qqls~-----------kl~Dvr~~~tt~kt~ie~~~  478 (1118)
T KOG1029|consen  411 LEWERARRQEMLNQKNREQEWIVY-LNAKKKQLQQELETLNFKLQQLSG-----------KLQDVRVDITTQKTEIEEVT  478 (1118)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhh-----------hhhhheeccchHHHHHHHhh
Confidence            555566666666666554444433 333356666666666655432111           22222111111223344555


Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcccCChHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhHH
Q 005259          439 RIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLE  518 (705)
Q Consensus       439 rkLeEe~aea~eLeqQls~LE~elkqLkQeLq~lE~e~~r~qek~~~ea~q~~qL~~Lk~EL~~~rq~qr~l~~kl~s~E  518 (705)
                      +..+-.+.+..+|..++..+..-+-.+-.+-+.++.++.+.+....+...+..+|.++..+-..++++   +++++..++
T Consensus       479 ~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~---ikdqldels  555 (1118)
T KOG1029|consen  479 KQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQA---IKDQLDELS  555 (1118)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence            55556666777777777777777777777777777777776655554444445555532211112232   344555566


Q ss_pred             HHHHHHHHHHHHhhhhhccc
Q 005259          519 AEVQKMRVEMAAMKRDAEHY  538 (705)
Q Consensus       519 ~elqkLr~e~~~~k~q~~el  538 (705)
                      .|...-..++.....++++|
T Consensus       556 kE~esk~~eidi~n~qlkel  575 (1118)
T KOG1029|consen  556 KETESKLNEIDIFNNQLKEL  575 (1118)
T ss_pred             HHHHHHHHhhhhHHHHHHHH
Confidence            66666666666666666443

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=97.88  E-value=0.058  Score=57.61  Aligned_cols=31  Identities=19%  Similarity=0.123  Sum_probs=16.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 005259          281 LSSRLQEYKSENAQLEELLVAERELSRSYEA  311 (705)
Q Consensus       281 Lrk~~~elks~~aqLEell~el~e~~~~L~~  311 (705)
                      |=.++..|-.+++.||..+..+......+..
T Consensus         9 LNdRla~YIekVr~LE~~N~~Le~~i~~~~~   39 (312)
T PF00038_consen    9 LNDRLASYIEKVRFLEQENKRLESEIEELRE   39 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHh
Confidence            3445566666666666665555554444433

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PRK04863 mukB cell division protein MukB; Provisional

Probab=97.84  E-value=0.25  Score=63.67  Aligned_cols=32  Identities=22%  Similarity=0.417  Sum_probs=13.6

Q ss_pred             HHHHHHHHHHhhhHHHHhhhhhHHHHHHHHHH
Q 005259          495 AWQDEVERARQGQRDAENKLSSLEAEVQKMRV  526 (705)
Q Consensus       495 ~Lk~EL~~~rq~qr~l~~kl~s~E~elqkLr~  526 (705)
                      .+..++....+....++.++..+...+.+|..
T Consensus       569 ~~~~~~~~~~~~~~~~r~~~~qL~~~i~~l~~  600 (1486)
T PRK04863        569 SLSESVSEARERRMALRQQLEQLQARIQRLAA  600 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444433334444444444444443

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.80  E-value=0.084  Score=64.03  Aligned_cols=32  Identities=16%  Similarity=0.206  Sum_probs=18.5

Q ss_pred             HHHHHHhHhhhhhhhhhHhhhcchhHHHHHHH
Q 005259          634 QLQKAAKLLDSGAVRATRFLWRYPIARIILLF  665 (705)
Q Consensus       634 ~vk~Aa~~lDs~slr~g~fLRRyP~ARl~vlv  665 (705)
                      .++..+..||..--..-..=|+.---++.-||
T Consensus      1012 kI~ktI~~lDe~k~~~L~kaw~~VN~dFG~IF 1043 (1174)
T KOG0933|consen 1012 KIKKTIEKLDEKKREELNKAWEKVNKDFGSIF 1043 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            56777777886665555555554444444433

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=97.79  E-value=0.14  Score=59.37  Aligned_cols=144  Identities=19%  Similarity=0.276  Sum_probs=71.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcccCChHHHHHHH----HHHHHHHHHHHH
Q 005259          428 AEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAI----QMQAWQDEVERA  503 (705)
Q Consensus       428 ~eLseALaelQrkLeEe~aea~eLeqQls~LE~elkqLkQeLq~lE~e~~r~qek~~~ea~q~~----qL~~Lk~EL~~~  503 (705)
                      ..+...+..+...|++.+..+.........|......|+.+|...+..+.+++++.......+.    +|...+.+|...
T Consensus       277 ~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~  356 (522)
T PF05701_consen  277 SELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAA  356 (522)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHH
Confidence            3334455566666666666665555555666666666666666666666666653332222121    233344444433


Q ss_pred             HhhhHHHHhhhhhHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259          504 RQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMN  583 (705)
Q Consensus       504 rq~qr~l~~kl~s~E~elqkLr~e~~~~k~q~~els~q~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~  583 (705)
                      +..-......+..+-..++.+..+....+               .-.....+++..-...++.......++..+|+.+..
T Consensus       357 ~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak---------------~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~k  421 (522)
T PF05701_consen  357 KAEEEKAKEAMSELPKALQQLSSEAEEAK---------------KEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALK  421 (522)
T ss_pred             HhhhcchhhhHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33322223334445555555555553333               233344444444445555555555555555555444


Q ss_pred             HHH
Q 005259          584 RLQ  586 (705)
Q Consensus       584 ~~~  586 (705)
                      -+.
T Consensus       422 e~e  424 (522)
T PF05701_consen  422 EAE  424 (522)
T ss_pred             HHH
Confidence            333

Several sequences in this family are described as being myosin heavy chain-like.

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=97.77  E-value=0.16  Score=59.56  Aligned_cols=80  Identities=16%  Similarity=0.149  Sum_probs=44.9

Q ss_pred             hhHHHHHHHHHhhhhhcchH----HHHHHHHHhhhhHHHHHHHHHH----------HHHHHHHHHHHHHhHHHHHHHHHH
Q 005259          251 DQLDEAQGLLKTTISTGQSK----EARLARVCAGLSSRLQEYKSEN----------AQLEELLVAERELSRSYEARIKQL  316 (705)
Q Consensus       251 kQLee~n~~LrsE~eal~~k----e~qLa~~~~RLrk~~~elks~~----------aqLEell~el~e~~~~L~~rl~~L  316 (705)
                      +.-+|+.+.|.+|.+-|+-+    ...+..+.++.++.....++..          ..|...++.--++-+.++..|..+
T Consensus       449 aEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~  528 (961)
T KOG4673|consen  449 AEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQETIEKH  528 (961)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            45678888888888877665    5667777777776665444433          333333333233344444455555


Q ss_pred             HHHHHHHHHHHHHH
Q 005259          317 EQELSVYKSEVTKV  330 (705)
Q Consensus       317 QaeL~~EQ~~l~q~  330 (705)
                      ++++.+-...+...
T Consensus       529 ~ae~~rq~~~~~~s  542 (961)
T KOG4673|consen  529 QAELTRQKDYYSNS  542 (961)
T ss_pred             HHHHHHHHHhhhhH
Confidence            55555544444333

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=97.73  E-value=0.0086  Score=58.09  Aligned_cols=139  Identities=20%  Similarity=0.254  Sum_probs=115.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259          340 AKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMER  419 (705)
Q Consensus       340 ak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le~E~~aH~aTk~ea~~R  419 (705)
                      ++..+..+...+...++.+++.+..+....+.++..|..++..++.+ +..++..|..++..++.-. .+...-..+..|
T Consensus         4 ~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~e-ld~~~~~l~~~k~~lee~~-~~~~~~E~l~rr   81 (143)
T PF12718_consen    4 ALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEE-LDKLEEQLKEAKEKLEESE-KRKSNAEQLNRR   81 (143)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHH-HHHHhHHHHHhh
Confidence            45556667778888888888888888888888888888888888888 8888888888888876642 222333466777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcc
Q 005259          420 EVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQ  480 (705)
Q Consensus       420 e~eLEee~~eLseALaelQrkLeEe~aea~eLeqQls~LE~elkqLkQeLq~lE~e~~r~q  480 (705)
                      ..-||++.......|.....++.+.-.++..+++++..|+.....+-.+++.+..++..++
T Consensus        82 iq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~~~k  142 (143)
T PF12718_consen   82 IQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYKEAK  142 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhc
Confidence            8888999988899999999999999999999999999999999999999999988887655

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.67  E-value=0.043  Score=62.75  Aligned_cols=195  Identities=24%  Similarity=0.268  Sum_probs=127.1

Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259          372 NMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGEL  451 (705)
Q Consensus       372 E~~rl~e~l~~~ekeilqSLE~eLkslq~~le~E~~aH~aTk~ea~~Re~eLEee~~eLseALaelQrkLeEe~aea~eL  451 (705)
                      ++..|+..+..++.+ ..+.+-+|..+++++++=...|+.+-..-..|+..|                 |++--++-...
T Consensus        44 eK~~Lkqq~eEleae-yd~~R~Eldqtkeal~q~~s~hkk~~~~g~e~EesL-----------------LqESaakE~~y  105 (772)
T KOG0999|consen   44 EKEDLKQQLEELEAE-YDLARTELDQTKEALGQYRSQHKKVARDGEEREESL-----------------LQESAAKEEYY  105 (772)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHH-----------------HHHHHHhHHHH
Confidence            445555556666666 667777788888888887777777755555555444                 23333444566


Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHcccCChHHHH--H-HH-HHHHHHHHHHHHHhhhHHHHhhhhhHHHHHHHHHHH
Q 005259          452 EQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEAN--Q-AI-QMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVE  527 (705)
Q Consensus       452 eqQls~LE~elkqLkQeLq~lE~e~~r~qek~~~ea~--q-~~-qL~~Lk~EL~~~rq~qr~l~~kl~s~E~elqkLr~e  527 (705)
                      -.++-.|+.++++++++|.....+.+++.........  . ++ +-..++.||...+-.-.-+-...+++|++.=-|.++
T Consensus       106 l~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKq  185 (772)
T KOG0999|consen  106 LQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQ  185 (772)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence            6778888889999999998888888887754333221  1 11 223366666544322111234456788898889999


Q ss_pred             HHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259          528 MAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQ  589 (705)
Q Consensus       528 ~~~~k~q~~els~q~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~e~  589 (705)
                      +..+++.-.++     --++--|+.|.++..-...+++.+..=+.--..|||-++-.+..++
T Consensus       186 Vs~LR~sQVEy-----EglkheikRleEe~elln~q~ee~~~Lk~IAekQlEEALeTlq~ER  242 (772)
T KOG0999|consen  186 VSNLRQSQVEY-----EGLKHEIKRLEEETELLNSQLEEAIRLKEIAEKQLEEALETLQQER  242 (772)
T ss_pred             HHHHhhhhhhh-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            98777532111     2235567888888888888888888877777888888877676664

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=97.66  E-value=0.25  Score=58.48  Aligned_cols=67  Identities=21%  Similarity=0.252  Sum_probs=50.4

Q ss_pred             hHHHHHHHHHhhhhhcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 005259          252 QLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVT  328 (705)
Q Consensus       252 QLee~n~~LrsE~eal~~ke~qLa~~~~RLrk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ~~l~  328 (705)
                      ||-+....|..|-+.          .+..|+..-.-|+-+++++-+.++.+.+.-.....++..|+..|...+..+.
T Consensus         1 ql~e~l~qlq~Erd~----------ya~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~   67 (617)
T PF15070_consen    1 QLMESLKQLQAERDQ----------YAQQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMA   67 (617)
T ss_pred             ChHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            567778888888775          6777777777788888888887777777777777778888888777665444

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=97.62  E-value=0.26  Score=57.83  Aligned_cols=51  Identities=16%  Similarity=0.283  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcccCChH
Q 005259          435 ARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPE  485 (705)
Q Consensus       435 aelQrkLeEe~aea~eLeqQls~LE~elkqLkQeLq~lE~e~~r~qek~~~  485 (705)
                      ..+++.+..+++++.++++++..+..++++++.+...++.++++.+.+..+
T Consensus       714 ~~l~~~le~e~nr~~~~~~e~~~~qeE~~~l~~r~~~le~e~r~~k~~~~q  764 (961)
T KOG4673|consen  714 GQLSKSLEKERNRAAENRQEYLAAQEEADTLEGRANQLEVEIRELKRKHKQ  764 (961)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            367788888999999999999999888888888888888888777654443

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=97.61  E-value=0.35  Score=58.94  Aligned_cols=62  Identities=15%  Similarity=0.147  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259          388 IQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQ  453 (705)
Q Consensus       388 lqSLE~eLkslq~~le~E~~aH~aTk~ea~~Re~eLEee~~eLseALaelQrkLeEe~aea~eLeq  453 (705)
                      ..+|..+...++.++.+....    ..+.....+.|..++..+.......++.+.....+...+.+
T Consensus       410 ~KnLs~k~e~Leeri~ql~qq----~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q  471 (1195)
T KOG4643|consen  410 HKNLSKKHEILEERINQLLQQ----LAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELDQ  471 (1195)
T ss_pred             hHhHhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHH
Confidence            444555555666655554332    44555577777778877887777777777776544433333

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=97.52  E-value=0.26  Score=60.57  Aligned_cols=227  Identities=14%  Similarity=0.219  Sum_probs=101.9

Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH------HHHH-----HHHhhhHHHHHHHHHHHHHHHHHHHH
Q 005259          334 LAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMN------MESI-----MRNRELTETRMIQALREELASVERRA  402 (705)
Q Consensus       334 ~~ealsak~~eie~Le~rl~~Le~el~~~K~rleele~E------~~rl-----~e~l~~~ekeilqSLE~eLkslq~~l  402 (705)
                      +.+.+....+.|..+++.+..++.++++.+..+..+..-      ..++     |--+.+...+ +..++.+++-.|.+.
T Consensus       219 ~~~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~~~~e~~~~~l~~Lk~k~~W~~V~~~~~q-l~~~~~~i~~~qek~  297 (1074)
T KOG0250|consen  219 IMESLDHAKELIDLKEEEIKNLKKKIKEEEEKLDNLEQLEDLKENLEQLKAKMAWAWVNEVERQ-LNNQEEEIKKKQEKV  297 (1074)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence            444555566677777777777777777777666543321      1111     1122223444 555555544444433


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcccC
Q 005259          403 EEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKK  482 (705)
Q Consensus       403 e~E~~aH~aTk~ea~~Re~eLEee~~eLseALaelQrkLeEe~aea~eLeqQls~LE~elkqLkQeLq~lE~e~~r~qek  482 (705)
                      ..           ...+..+.+..+..+-.-++..+.++++-+.++..-...+..+-.+++.++.+..+++.++...++.
T Consensus       298 ~~-----------l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~  366 (1074)
T KOG0250|consen  298 DT-----------LQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENS  366 (1074)
T ss_pred             HH-----------HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            21           1112222222232233333444444444444444444444444444444444444433333333311


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHhhh-HHHHhhhhhHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHH
Q 005259          483 SPEEANQAIQMQAWQDEVERARQGQ-RDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQ  561 (705)
Q Consensus       483 ~~~ea~q~~qL~~Lk~EL~~~rq~q-r~l~~kl~s~E~elqkLr~e~~~~k~q~~els~q~~~elE~rl~eLtE~L~eKQ  561 (705)
                      ......   ....+...+.+++... ..+...+...+.++..|..+++.+..+        ...|...++.+++.+...+
T Consensus       367 i~~~k~---~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~--------~~~L~~e~~~~~~~~~~~~  435 (1074)
T KOG0250|consen  367 IRKLKK---EVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQ--------INSLREELNEVKEKAKEEE  435 (1074)
T ss_pred             HHHHHH---HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHhH
Confidence            111000   0111233333333222 333445555666666666666443321        1344445555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 005259          562 TQLETMASEKAAAEFQLEKEMN  583 (705)
Q Consensus       562 ~qlE~L~~Er~sL~~qLE~~~~  583 (705)
                      .....+..++..+...++--..
T Consensus       436 ee~~~i~~~i~~l~k~i~~~~~  457 (1074)
T KOG0250|consen  436 EEKEHIEGEILQLRKKIENISE  457 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            5566666666666655554443

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=97.47  E-value=0.56  Score=57.93  Aligned_cols=37  Identities=24%  Similarity=0.291  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259          548 KRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNR  584 (705)
Q Consensus       548 ~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~  584 (705)
                      .++..|.-....++.+|+...++..-|..+++..+.-
T Consensus      1710 ~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl~~ 1746 (1758)
T KOG0994|consen 1710 DRLKDLELEYLRNEQALEDKAAELAGLEKRVESVLDH 1746 (1758)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHH
Confidence            3667777778888888888888888888888886643

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=97.47  E-value=0.14  Score=51.98  Aligned_cols=102  Identities=21%  Similarity=0.212  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259          353 DALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASM  432 (705)
Q Consensus       353 ~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le~E~~aH~aTk~ea~~Re~eLEee~~eLse  432 (705)
                      .+++.++..+|.-+..+++++.+|+...-.++++ .++|..++.+++..-..=...+.-++.    +..+|-..+..|-.
T Consensus        63 K~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE-~q~L~~~i~~Lqeen~kl~~e~~~lk~----~~~eL~~~~~~Lq~  137 (193)
T PF14662_consen   63 KALEEELEDLKTLAKSLEEENRSLLAQARQLEKE-QQSLVAEIETLQEENGKLLAERDGLKK----RSKELATEKATLQR  137 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhHHHHhhhhHHH----HHHHHHHhhHHHHH
Confidence            3456667777777777777777777777777777 777777777777665543333333322    44444334433333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 005259          433 ALARIQRIADERTAKAGELEQKVAMLE  459 (705)
Q Consensus       433 ALaelQrkLeEe~aea~eLeqQls~LE  459 (705)
                      -+..+..-+...-+.+.+-..++..+.
T Consensus       138 Ql~~~e~l~~~~da~l~e~t~~i~eL~  164 (193)
T PF14662_consen  138 QLCEFESLICQRDAILSERTQQIEELK  164 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            333333333333333333334433333

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=97.41  E-value=3.4e-05  Score=93.33  Aligned_cols=61  Identities=28%  Similarity=0.284  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHc
Q 005259          419 REVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRG  479 (705)
Q Consensus       419 Re~eLEee~~eLseALaelQrkLeEe~aea~eLeqQls~LE~elkqLkQeLq~lE~e~~r~  479 (705)
                      |...|+++.-.+..-|.+++..+++....+..|++...-|..++..++.+|+.....+..+
T Consensus       315 ~~EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~L  375 (859)
T PF01576_consen  315 RTEELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAEL  375 (859)
T ss_dssp             -------------------------------------------------------------
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555555555556666666666666666666666666655555555555554444333

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=97.39  E-value=0.49  Score=58.28  Aligned_cols=38  Identities=26%  Similarity=0.360  Sum_probs=18.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHH
Q 005259          436 RIQRIADERTAKAGELEQKVAMLEVEC-ATLQQELQDME  473 (705)
Q Consensus       436 elQrkLeEe~aea~eLeqQls~LE~el-kqLkQeLq~lE  473 (705)
                      .++..+.+-+..++.+++++..++.+. ..+..++...+
T Consensus       362 ~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e  400 (1074)
T KOG0250|consen  362 EIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERE  400 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence            444445555555555555555554444 33333333333

>PHA02562 46 endonuclease subunit; Provisional

Probab=97.37  E-value=0.28  Score=56.41  Aligned_cols=30  Identities=13%  Similarity=0.185  Sum_probs=11.7

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 005259          347 TLVSSIDALKKQAALSEGNLASLQMNMESI  376 (705)
Q Consensus       347 ~Le~rl~~Le~el~~~K~rleele~E~~rl  376 (705)
                      +++..+..+..++..++..+..++.++..+
T Consensus       217 ~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l  246 (562)
T PHA02562        217 RKQNKYDELVEEAKTIKAEIEELTDELLNL  246 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333344444443333333

>PHA02562 46 endonuclease subunit; Provisional

Probab=97.34  E-value=0.22  Score=57.23  Aligned_cols=9  Identities=22%  Similarity=0.457  Sum_probs=3.6

Q ss_pred             hhhHHHHHH
Q 005259          630 GASVQLQKA  638 (705)
Q Consensus       630 ~~~~~vk~A  638 (705)
                      |..++|.=|
T Consensus       472 Ge~~r~~la  480 (562)
T PHA02562        472 GEKARIDLA  480 (562)
T ss_pred             hHHHHHHHH
Confidence            433444433

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=97.28  E-value=6e-05  Score=91.23  Aligned_cols=53  Identities=28%  Similarity=0.337  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcccC
Q 005259          430 ASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKK  482 (705)
Q Consensus       430 LseALaelQrkLeEe~aea~eLeqQls~LE~elkqLkQeLq~lE~e~~r~qek  482 (705)
                      +.++-.-+++.+.+....+.++..++..|+--...|..+++++..++.+.+..
T Consensus       319 lEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~  371 (859)
T PF01576_consen  319 LEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAA  371 (859)
T ss_dssp             -----------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444455555555556667777777777777777777777777777776643

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=97.25  E-value=0.73  Score=54.42  Aligned_cols=227  Identities=21%  Similarity=0.231  Sum_probs=134.8

Q ss_pred             hHHHHHHHHHhhhhhcchHHHHHHHHHhhhhHH----------HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 005259          252 QLDEAQGLLKTTISTGQSKEARLARVCAGLSSR----------LQEYKSENAQLEELLVAERELSRSYEARIKQLEQELS  321 (705)
Q Consensus       252 QLee~n~~LrsE~eal~~ke~qLa~~~~RLrk~----------~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~  321 (705)
                      +++.+...++.++.   .|+.+.+.+-.++.+.          +++++..+++|++.-..+.+..+........|.++|.
T Consensus       223 k~~~leeey~~E~n---~kEkqvs~L~~q~~eKen~~kdl~~~l~es~~~~~qLeE~~~~q~E~Lkes~~~qe~L~~eL~  299 (786)
T PF05483_consen  223 KFEDLEEEYKKEVN---DKEKQVSLLQTQLKEKENKIKDLLLLLQESQDKCNQLEEKTKEQHENLKESNEEQEHLLQELE  299 (786)
T ss_pred             HHHHHHHHHHHHhh---hHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHH
Confidence            34445555555543   4666777776666554          4566777888888777777776666666666666665


Q ss_pred             HHHHHHHHHH----------------------------HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 005259          322 VYKSEVTKVE----------------------------SNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNM  373 (705)
Q Consensus       322 ~EQ~~l~q~e----------------------------s~~~ealsak~~eie~Le~rl~~Le~el~~~K~rleele~E~  373 (705)
                      ..+.++....                            .++..+..+....+.+++..+..|+.-+.....|+.+.+.++
T Consensus       300 ~~K~slq~~~~tq~~le~~lq~~~k~~~qlt~eKe~~~Ee~nk~k~~~s~~v~e~qtti~~L~~lL~~Eqqr~~~~ed~l  379 (786)
T PF05483_consen  300 DIKQSLQESESTQKALEEDLQQATKTLIQLTEEKEAQMEELNKAKAQHSFVVTELQTTICNLKELLTTEQQRLKKNEDQL  379 (786)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            5554444322                            123333444445556666777788777877888888888887


Q ss_pred             HHHHHHhhhHHHH------HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH--------------H---
Q 005259          374 ESIMRNRELTETR------MIQALREELASVERRAEEER------AAHNATKMAAMEREVEL--------------E---  424 (705)
Q Consensus       374 ~rl~e~l~~~eke------ilqSLE~eLkslq~~le~E~------~aH~aTk~ea~~Re~eL--------------E---  424 (705)
                      ..+.-++..+..+      -.+..+.+|..++.-++.-.      ........++..++.+|              +   
T Consensus       380 k~l~~eLqkks~eleEmtk~k~~ke~eleeL~~~L~e~qkll~ekk~~eki~E~lq~~eqel~~llq~~ekev~dLe~~l  459 (786)
T PF05483_consen  380 KILTMELQKKSSELEEMTKQKNNKEVELEELKKILAEKQKLLDEKKQFEKIAEELQGTEQELTGLLQIREKEVHDLEIQL  459 (786)
T ss_pred             HHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            7777666653111      12333344555544443311      10001111111111111              1   


Q ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHccc
Q 005259          425 ----HRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQK  481 (705)
Q Consensus       425 ----ee~~eLseALaelQrkLeEe~aea~eLeqQls~LE~elkqLkQeLq~lE~e~~r~qe  481 (705)
                          ..+..|+..+..+-..+..+..+-.+|-..+..+..+-+++.|+..++-.++...++
T Consensus       460 ~~~~~~eq~yskQVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~qe  520 (786)
T PF05483_consen  460 TTIKESEQHYSKQVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQETSDMALELKKQQE  520 (786)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence                133666777777877888777777788888888888888888888877777766654

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=97.22  E-value=0.91  Score=55.01  Aligned_cols=37  Identities=11%  Similarity=0.038  Sum_probs=23.9

Q ss_pred             hHhhhcchhHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 005259          650 TRFLWRYPIARIILLFYLVFVHLFLMYLLHRLQEQAD  686 (705)
Q Consensus       650 g~fLRRyP~ARl~vlvYmvlLHLWVm~VL~~~~~~~~  686 (705)
                      --+++.|..-++.|.+-++-|--.+-..|+.|-|.-+
T Consensus       652 eavt~ghageqyaf~arllyll~slqaaL~q~e~al~  688 (1243)
T KOG0971|consen  652 EAVTRGHAGEQYAFAARLLYLLSSLQAALHQYEHALS  688 (1243)
T ss_pred             hhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            3467778888887777665444455666777666533

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.18  E-value=1.1  Score=55.04  Aligned_cols=111  Identities=18%  Similarity=0.271  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHHH---HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHH
Q 005259          290 SENAQLEELLVA---ERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNL  366 (705)
Q Consensus       290 s~~aqLEell~e---l~e~~~~L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le~rl~~Le~el~~~K~rl  366 (705)
                      +.++++|..|..   ++.+++.|.+.+.-...+|......+.+-+.  .    ..-+.+..+..++..++++++.....+
T Consensus       691 ~el~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~e~--~----~~~~~~~~~~e~v~e~~~~Ike~~~~~  764 (1174)
T KOG0933|consen  691 KELEALERELKSLEAQSQKFRDLKQQLELKLHELALLEKRLEQNEF--H----KLLDDLKELLEEVEESEQQIKEKERAL  764 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChH--h----hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444432   3445666666665555555554443333222  1    122333344555555555555555555


Q ss_pred             HHHHHHHHHHHHHhhh----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259          367 ASLQMNMESIMRNREL----TETRMIQALREELASVERRAEEERA  407 (705)
Q Consensus       367 eele~E~~rl~e~l~~----~ekeilqSLE~eLkslq~~le~E~~  407 (705)
                      -+.+.....+-.+..+    .+.+ +..++++|+.+.++++....
T Consensus       765 k~~~~~i~~lE~~~~d~~~~re~r-lkdl~keik~~k~~~e~~~~  808 (1174)
T KOG0933|consen  765 KKCEDKISTLEKKMKDAKANRERR-LKDLEKEIKTAKQRAEESSK  808 (1174)
T ss_pred             HHHHHHHHHHHHHHhHhhhhhHhH-HHHHHHHHHHHHHHHHHHHH
Confidence            5555554444444443    2445 77888888888888876544

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=97.18  E-value=8.8e-05  Score=88.16  Aligned_cols=28  Identities=25%  Similarity=0.274  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259          545 ELEKRYRELTDLLYYKQTQLETMASEKA  572 (705)
Q Consensus       545 elE~rl~eLtE~L~eKQ~qlE~L~~Er~  572 (705)
                      .+++|..-++.++.--..++.++..|-.
T Consensus       403 RLerq~~L~~kE~d~LR~~L~syd~e~~  430 (722)
T PF05557_consen  403 RLERQKALATKERDYLRAQLKSYDKEET  430 (722)
T ss_dssp             ----------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence            3444444444444444445555444433

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.15  E-value=0.83  Score=53.06  Aligned_cols=103  Identities=15%  Similarity=0.200  Sum_probs=48.8

Q ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 005259          275 ARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEA---RIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSS  351 (705)
Q Consensus       275 a~~~~RLrk~~~elks~~aqLEell~el~e~~~~L~~---rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le~r  351 (705)
                      .+++.||++-.+.....+..|+..++++-++....+.   ++..|...-++.|+.....+. +..+   +..-.+.+.+.
T Consensus       220 ~Elk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~-y~~~---~~~k~~~~~~~  295 (581)
T KOG0995|consen  220 DELKHRLEKYFTSIANEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQA-YVSQ---MKSKKQHMEKK  295 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHH-HHHH---HHhhhHHHHHH
Confidence            3456777777776666666666666666665543333   444444444444444444333 2211   22222234444


Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q 005259          352 IDALKKQAALSEGNLASLQMNMESIMRNRE  381 (705)
Q Consensus       352 l~~Le~el~~~K~rleele~E~~rl~e~l~  381 (705)
                      +..+..++..-...++.++.+++.|+-.+.
T Consensus       296 l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie  325 (581)
T KOG0995|consen  296 LEMLKSEIEEKEEEIEKLQKENDELKKQIE  325 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444444444444443

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=97.11  E-value=1.1  Score=54.11  Aligned_cols=106  Identities=18%  Similarity=0.235  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259          344 EIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVEL  423 (705)
Q Consensus       344 eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le~E~~aH~aTk~ea~~Re~eL  423 (705)
                      .+++++......+.++..+|.++.++..+---+.++..+..++        +.+.+....                  ++
T Consensus       411 ~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQ--------le~~~~s~~------------------~~  464 (980)
T KOG0980|consen  411 LVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQ--------LESAEQSID------------------DV  464 (980)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhHH------------------HH
Confidence            3667777888888888888888888888877777766665555        333332211                  44


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 005259          424 EHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEAR  475 (705)
Q Consensus       424 Eee~~eLseALaelQrkLeEe~aea~eLeqQls~LE~elkqLkQeLq~lE~e  475 (705)
                      ++.+..+..-+.++++.....-.+..+....++.|+.++..+..+++.++..
T Consensus       465 ~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~  516 (980)
T KOG0980|consen  465 EEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRT  516 (980)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555555555666666555555555555555555555555555555444443

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=97.10  E-value=0.96  Score=53.00  Aligned_cols=25  Identities=16%  Similarity=0.161  Sum_probs=13.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259          388 IQALREELASVERRAEEERAAHNAT  412 (705)
Q Consensus       388 lqSLE~eLkslq~~le~E~~aH~aT  412 (705)
                      +..+...|..+-..++.|..+++..
T Consensus       284 ~~~i~~~Id~Lyd~lekE~~A~~~v  308 (569)
T PRK04778        284 NEEIQERIDQLYDILEREVKARKYV  308 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555666666666655544333

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=97.04  E-value=0.72  Score=52.08  Aligned_cols=50  Identities=22%  Similarity=0.299  Sum_probs=30.8

Q ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 005259          278 CAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEV  327 (705)
Q Consensus       278 ~~RLrk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ~~l  327 (705)
                      ..+|++.++.++..+.+++..+.+-......+..+|..+...|..++...
T Consensus        61 ~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~  110 (420)
T COG4942          61 RAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE  110 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence            66666666666666666666666555555666666666666655555444

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=97.03  E-value=0.15  Score=49.51  Aligned_cols=125  Identities=21%  Similarity=0.284  Sum_probs=87.7

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 005259          279 AGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQ  358 (705)
Q Consensus       279 ~RLrk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le~rl~~Le~e  358 (705)
                      ..++.....+.-++.++|.-+..++.+...|+..+..++..|...+..+.....        .....+.|..++..|+.+
T Consensus        17 e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~--------~~~~~E~l~rriq~LEee   88 (143)
T PF12718_consen   17 EELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEK--------RKSNAEQLNRRIQLLEEE   88 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH--------HHHhHHHHHhhHHHHHHH
Confidence            345555666666666777766666666666666666666666665555444443        222334788889999999


Q ss_pred             HHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259          359 AALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNAT  412 (705)
Q Consensus       359 l~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le~E~~aH~aT  412 (705)
                      +.....++..+..-++.+--...+.+.. +..|+.+......+++.-...|..+
T Consensus        89 le~ae~~L~e~~ekl~e~d~~ae~~eRk-v~~le~~~~~~E~k~eel~~k~~~~  141 (143)
T PF12718_consen   89 LEEAEKKLKETTEKLREADVKAEHFERK-VKALEQERDQWEEKYEELEEKYKEA  141 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHhhHHHHHHHHHHHHHHHHHh
Confidence            9999999988888888888888888887 8888888777777777655555443

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PRK09039 hypothetical protein; Validated

Probab=97.01  E-value=0.21  Score=54.98  Aligned_cols=123  Identities=20%  Similarity=0.240  Sum_probs=96.3

Q ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 005259          275 ARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDA  354 (705)
Q Consensus       275 a~~~~RLrk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le~rl~~  354 (705)
                      ...-.++++.+..+..+++.|=+++.-.+.+...|+.++..++..+...+..+..+++.+.    .+......++.++..
T Consensus        45 s~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~----~~~~~~~~~~~~~~~  120 (343)
T PRK09039         45 SREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLA----ELAGAGAAAEGRAGE  120 (343)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhhhhcchHHHHHHH
Confidence            3456677777788888888888888888888888999999999988887777777776444    344445678888888


Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 005259          355 LKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRA  402 (705)
Q Consensus       355 Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~l  402 (705)
                      +..++...+....+..-+...|...+..+..+ +.+++..|..++.+.
T Consensus       121 l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Q-la~le~~L~~ae~~~  167 (343)
T PRK09039        121 LAQELDSEKQVSARALAQVELLNQQIAALRRQ-LAALEAALDASEKRD  167 (343)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence            88999999999999999999988888888777 777777777766554

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.00  E-value=1.1  Score=52.05  Aligned_cols=86  Identities=13%  Similarity=0.157  Sum_probs=45.0

Q ss_pred             CCchhhhhHHHHHHHHHhhhhhcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 005259          245 PPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYK  324 (705)
Q Consensus       245 k~~~lqkQLee~n~~LrsE~eal~~ke~qLa~~~~RLrk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ  324 (705)
                      .+..++++++++...+. +.+.+..++.-|.+..++|+.....++.-+.+++.....+--+...|..++..-+.++...|
T Consensus       236 ~ie~l~~~n~~l~e~i~-e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq  314 (581)
T KOG0995|consen  236 EIEDLKKTNRELEEMIN-EREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQ  314 (581)
T ss_pred             HHHHHHHHHHHHHHHHH-HHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455566666666666 55555556666666666666666665555555555333333333344444444444444444


Q ss_pred             HHHHHHH
Q 005259          325 SEVTKVE  331 (705)
Q Consensus       325 ~~l~q~e  331 (705)
                      .....++
T Consensus       315 ~~~d~Lk  321 (581)
T KOG0995|consen  315 KENDELK  321 (581)
T ss_pred             HHHHHHH
Confidence            4444443

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=96.96  E-value=0.6  Score=55.08  Aligned_cols=82  Identities=13%  Similarity=0.289  Sum_probs=50.5

Q ss_pred             HHHHHHhhhHHHHhhhhhHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259          499 EVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQL  578 (705)
Q Consensus       499 EL~~~rq~qr~l~~kl~s~E~elqkLr~e~~~~k~q~~els~q~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qL  578 (705)
                      ++..+|+..+.+...+...++...+|..+++.+...+      .-.-|=.||.+.+-.+--=+..|..+..+-..|+.++
T Consensus       448 ~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~------~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkei  521 (594)
T PF05667_consen  448 EIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDV------NRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEI  521 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC------CHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444455666678888888888887766543      2356778888888776544466666555555555555


Q ss_pred             HHHHHHHH
Q 005259          579 EKEMNRLQ  586 (705)
Q Consensus       579 E~~~~~~~  586 (705)
                      .-+..+++
T Consensus       522 N~l~gkL~  529 (594)
T PF05667_consen  522 NSLTGKLD  529 (594)
T ss_pred             HHHHHHHH
Confidence            54444444

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=96.82  E-value=1.6  Score=51.09  Aligned_cols=148  Identities=15%  Similarity=0.217  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH--HH-HHHHHHHHHHHHHHhHH
Q 005259          386 RMIQALREELASVERRAEEERAAHNATKMAA---MEREVELEHRAAEASMALARIQRI--AD-ERTAKAGELEQKVAMLE  459 (705)
Q Consensus       386 eilqSLE~eLkslq~~le~E~~aH~aTk~ea---~~Re~eLEee~~eLseALaelQrk--Le-Ee~aea~eLeqQls~LE  459 (705)
                      ..+..+..+|..+=..++.|..++.......   ......+...+..+..-+..+...  +. .+...+..+.+++..++
T Consensus       278 ~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~  357 (560)
T PF06160_consen  278 EENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELE  357 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH
Confidence            3355555666666666766666544442211   111222222222222222222221  11 23344566666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHcccCChHHHHHHHH----HHHHHHHHHHHHhhhHHHHhhhhhHHHHHHHHHHHHHHhhh
Q 005259          460 VECATLQQELQDMEARLKRGQKKSPEEANQAIQ----MQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKR  533 (705)
Q Consensus       460 ~elkqLkQeLq~lE~e~~r~qek~~~ea~q~~q----L~~Lk~EL~~~rq~qr~l~~kl~s~E~elqkLr~e~~~~k~  533 (705)
                      ..+..+...+..-..-+..+..........+.+    ...+...|..++..=..++.++..+...+..++..++...-
T Consensus       358 ~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~nL  435 (560)
T PF06160_consen  358 KRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKSNL  435 (560)
T ss_pred             HHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            666666665554444444443322222222211    22234445455544444556666667777777776655443

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=96.81  E-value=1.1  Score=48.89  Aligned_cols=202  Identities=18%  Similarity=0.214  Sum_probs=102.4

Q ss_pred             hHHHHHHHHHhhhhhcchHHH-HHHHHHhhhhHHHHHHHHHHHHH--------HHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 005259          252 QLDEAQGLLKTTISTGQSKEA-RLARVCAGLSSRLQEYKSENAQL--------EELLVAERELSRSYEARIKQLEQELSV  322 (705)
Q Consensus       252 QLee~n~~LrsE~eal~~ke~-qLa~~~~RLrk~~~elks~~aqL--------Eell~el~e~~~~L~~rl~~LQaeL~~  322 (705)
                      -|.+.++.||...-.++++.- .=--....|=|+++.+++....|        |-+...++-+...|......|+..|.+
T Consensus        52 ~L~~e~~~lr~~sv~~~~~aEqEEE~isN~LlKkl~~l~keKe~L~~~~e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~  131 (310)
T PF09755_consen   52 HLQEENRALREASVRIQAKAEQEEEFISNTLLKKLQQLKKEKETLALKYEQEEEFLTNDLSRKLNQLRQEKVELENQLEQ  131 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445566666666433333311 11124556777777777776666        333334555666666677777777777


Q ss_pred             HHHH-HHHHHHHHH----------HHHHhhhHHHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHHhhh--------
Q 005259          323 YKSE-VTKVESNLA----------EALAAKNSEIETLVSSIDALK-KQAALSEGNLASLQMNMESIMRNREL--------  382 (705)
Q Consensus       323 EQ~~-l~q~es~~~----------ealsak~~eie~Le~rl~~Le-~el~~~K~rleele~E~~rl~e~l~~--------  382 (705)
                      +|+. +.++...+.          ..+.....+.=+|+..+..=+ -=+..+-.+++++..+++.|+..+..        
T Consensus       132 EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~~~s~~~s~  211 (310)
T PF09755_consen  132 EQEYLVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLEQPVSAPPSP  211 (310)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCc
Confidence            7754 233333222          111111122222222221111 11455556677777777777776662        


Q ss_pred             ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259          383 ---------------TETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAK  447 (705)
Q Consensus       383 ---------------~ekeilqSLE~eLkslq~~le~E~~aH~aTk~ea~~Re~eLEee~~eLseALaelQrkLeEe~ae  447 (705)
                                     .... +..|..+..-+++.+..-...|..-......-+..+-++|       ..++++|..+..+
T Consensus       212 ~d~~~~~~~~Dt~e~~~sh-I~~Lr~EV~RLR~qL~~sq~e~~~k~~~~~~eek~ireEN-------~rLqr~L~~E~er  283 (310)
T PF09755_consen  212 RDTVNVSEENDTAERLSSH-IRSLRQEVSRLRQQLAASQQEHSEKMAQYLQEEKEIREEN-------RRLQRKLQREVER  283 (310)
T ss_pred             chHHhhcccCCchhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence                           1122 3344444444444444433343333333333344444444       4567777777777


Q ss_pred             HHHHHHHHHhHHHH
Q 005259          448 AGELEQKVAMLEVE  461 (705)
Q Consensus       448 a~eLeqQls~LE~e  461 (705)
                      ...|.++++..|.-
T Consensus       284 real~R~lsesEss  297 (310)
T PF09755_consen  284 REALCRHLSESESS  297 (310)
T ss_pred             HHHHHHHHHHHHHH
Confidence            77777777766543

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=96.76  E-value=2.3  Score=52.15  Aligned_cols=23  Identities=13%  Similarity=0.222  Sum_probs=11.3

Q ss_pred             hhhhHHHHHHHHHHHHHHhhhhh
Q 005259          513 KLSSLEAEVQKMRVEMAAMKRDA  535 (705)
Q Consensus       513 kl~s~E~elqkLr~e~~~~k~q~  535 (705)
                      .+...-.++..|...+...+++|
T Consensus       426 ~l~~~~e~i~~l~~si~e~~~r~  448 (1200)
T KOG0964|consen  426 ELKEKLEEIKELESSINETKGRM  448 (1200)
T ss_pred             HHHHHHHHHHHHHhhHhhhhhHH
Confidence            33444445555555555545544

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=96.75  E-value=2  Score=51.34  Aligned_cols=50  Identities=14%  Similarity=0.246  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 005259          424 EHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDME  473 (705)
Q Consensus       424 Eee~~eLseALaelQrkLeEe~aea~eLeqQls~LE~elkqLkQeLq~lE  473 (705)
                      ..+...+..++..+.++..+....+..|..++...+..+++++..+.+..
T Consensus       544 ~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~  593 (698)
T KOG0978|consen  544 IKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELE  593 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444455556666666666555555555555555555554444443333

>PRK11281 hypothetical protein; Provisional

Probab=96.71  E-value=3  Score=52.71  Aligned_cols=44  Identities=20%  Similarity=0.116  Sum_probs=23.6

Q ss_pred             hHhhhhhhhhhHhhh----cchhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005259          640 KLLDSGAVRATRFLW----RYPIARIILLFYLVFVHLFLMYLLHRLQE  683 (705)
Q Consensus       640 ~~lDs~slr~g~fLR----RyP~ARl~vlvYmvlLHLWVm~VL~~~~~  683 (705)
                      ..++.++-++|.+-+    --|.|=+|.++|.+.+-||++++-+.+.+
T Consensus       522 ~~l~~~~~~ig~~~~D~~~~T~~al~~t~l~alp~~l~~~~~g~~~~~  569 (1113)
T PRK11281        522 ARLQKLAADIGTLKRDSQLHTPKAILITLLLALPVTLIFLAVGLILLT  569 (1113)
T ss_pred             HHHHHHHHhcCCcccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            456666666666533    23555566666655555554444444444

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=96.56  E-value=0.0029  Score=75.46  Aligned_cols=35  Identities=26%  Similarity=0.252  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259          546 LEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEK  580 (705)
Q Consensus       546 lE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~  580 (705)
                      +..++..|..++..-+..+..|..++..|..+|+.
T Consensus       501 ~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~  535 (722)
T PF05557_consen  501 LSEELNELQKEIEELERENERLRQELEELESELEK  535 (722)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556666666666666666666666666666665

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=96.54  E-value=3.5  Score=51.41  Aligned_cols=41  Identities=20%  Similarity=0.141  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259          547 EKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQE  587 (705)
Q Consensus       547 E~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~  587 (705)
                      ..+-..|.-+-..|-..|..|+.+...-..+|+...+.+.-
T Consensus      1695 ~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~ 1735 (1758)
T KOG0994|consen 1695 RTEAEKLLGQANEKLDRLKDLELEYLRNEQALEDKAAELAG 1735 (1758)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhh
Confidence            34444555555555555666665555555555554443333

>PRK01156 chromosome segregation protein; Provisional

Probab=96.54  E-value=3.2  Score=50.89  Aligned_cols=15  Identities=13%  Similarity=0.045  Sum_probs=7.8

Q ss_pred             hhhhhhHhhhcchhH
Q 005259          645 GAVRATRFLWRYPIA  659 (705)
Q Consensus       645 ~slr~g~fLRRyP~A  659 (705)
                      +....+.++.--|++
T Consensus       822 l~~~~~~lilDEpt~  836 (895)
T PRK01156        822 LNNDKSLLIMDEPTA  836 (895)
T ss_pred             hccCCCeEEEeCCCC
Confidence            333445556666664

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=96.53  E-value=3.3  Score=50.93  Aligned_cols=45  Identities=11%  Similarity=0.142  Sum_probs=20.9

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 005259          359 AALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEE  404 (705)
Q Consensus       359 l~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le~  404 (705)
                      +.+++..+.-+-.+++++..+-+..-+. +..|+-+++.++...+.
T Consensus       274 i~ele~~l~~l~~ekeq~~a~~t~~~k~-kt~lel~~kdlq~~i~~  318 (1200)
T KOG0964|consen  274 IKELENKLTNLREEKEQLKARETKISKK-KTKLELKIKDLQDQITG  318 (1200)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhhHHHHHHhhh
Confidence            3333334444444444444444443333 44555556666655544

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=96.50  E-value=0.00066  Score=80.75  Aligned_cols=77  Identities=16%  Similarity=0.150  Sum_probs=0.0

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 005259          302 ERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRN  379 (705)
Q Consensus       302 l~e~~~~L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~  379 (705)
                      +++.+..|...+..|+.+|.....-..++.. |...+......+.+...+...+..++..++.++..++.+.+++...
T Consensus       337 Lee~N~~l~e~~~~LEeel~~~~~~~~qle~-~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l~~e  413 (713)
T PF05622_consen  337 LEEDNAVLLETKAMLEEELKKARALKSQLEE-YKKQIQELEQKLSEESRRADKLEFENKQLEEKLEALEEEKERLQEE  413 (713)
T ss_dssp             ------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334555556666677776554433333332 2222222222222333333334444444444444444444444433

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=96.48  E-value=2.7  Score=49.32  Aligned_cols=42  Identities=21%  Similarity=0.249  Sum_probs=20.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259          547 EKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEV  588 (705)
Q Consensus       547 E~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~e  588 (705)
                      ..++..+.......+..+..|..+-.....+|+.....+...
T Consensus       389 ~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~i  430 (569)
T PRK04778        389 LKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEI  430 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444555555555555555555555544443

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=96.44  E-value=0.9  Score=47.90  Aligned_cols=102  Identities=22%  Similarity=0.321  Sum_probs=52.8

Q ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 005259          276 RVCAGLSSRLQEYKSENAQLEELLVAEREL---SRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSI  352 (705)
Q Consensus       276 ~~~~RLrk~~~elks~~aqLEell~el~e~---~~~L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le~rl  352 (705)
                      ++..+.......+.+..+.+|.++..+..+   ...|++.+.+++.++...+.-....+..+...  +..       .++
T Consensus        21 rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v--~~~-------~e~   91 (239)
T COG1579          21 RLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAV--KDE-------REL   91 (239)
T ss_pred             HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--ccH-------HHH
Confidence            355555556666666666666655543333   33344456666666555554444444433111  122       344


Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHH
Q 005259          353 DALKKQAALSEGNLASLQMNMESIMRNRELTETR  386 (705)
Q Consensus       353 ~~Le~el~~~K~rleele~E~~rl~e~l~~~eke  386 (705)
                      ..|+.++...+.++..++.++..+++.+..+++.
T Consensus        92 ~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~  125 (239)
T COG1579          92 RALNIEIQIAKERINSLEDELAELMEEIEKLEKE  125 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555666666666666666555555544

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=96.43  E-value=1.9  Score=47.04  Aligned_cols=117  Identities=18%  Similarity=0.239  Sum_probs=71.6

Q ss_pred             HHHHHHHHhhhhhcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259          254 DEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESN  333 (705)
Q Consensus       254 ee~n~~LrsE~eal~~ke~qLa~~~~RLrk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ~~l~q~es~  333 (705)
                      ..-|+.||.+.++...+-..|+.....|+...-.+.....+=|+-      .+..|-.+|..|..+-...--.|.+.+.-
T Consensus        33 ~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~------isN~LlKkl~~l~keKe~L~~~~e~EEE~  106 (310)
T PF09755_consen   33 QQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEF------ISNTLLKKLQQLKKEKETLALKYEQEEEF  106 (310)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334888888888888888888888888887777666666555553      45667777888777777776667776653


Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHhhhHHHH
Q 005259          334 LAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMN-MESIMRNRELTETR  386 (705)
Q Consensus       334 ~~ealsak~~eie~Le~rl~~Le~el~~~K~rleele~E-~~rl~e~l~~~eke  386 (705)
                      +..          +|..++..+..+-..+...++.=++- ..+|+..+..++++
T Consensus       107 ltn----------~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e  150 (310)
T PF09755_consen  107 LTN----------DLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKE  150 (310)
T ss_pred             HHH----------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            332          44444444444444444444332222 34444444444444

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=96.35  E-value=4.4  Score=50.32  Aligned_cols=33  Identities=15%  Similarity=0.127  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259          548 KRYRELTDLLYYKQTQLETMASEKAAAEFQLEK  580 (705)
Q Consensus       548 ~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~  580 (705)
                      +.+.-|..++....+.++.+..|++++...|..
T Consensus       870 ~~~tkl~~~i~~~es~ie~~~~er~~lL~~ckl  902 (1141)
T KOG0018|consen  870 KELTKLDKEITSIESKIERKESERHNLLSKCKL  902 (1141)
T ss_pred             HHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhh
Confidence            345666677777778888888999988877765

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.34  E-value=1.5  Score=52.75  Aligned_cols=61  Identities=20%  Similarity=0.180  Sum_probs=45.4

Q ss_pred             CCCchhhhhHHHHHHHHHhhhhhcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 005259          244 DPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERE  304 (705)
Q Consensus       244 ek~~~lqkQLee~n~~LrsE~eal~~ke~qLa~~~~RLrk~~~elks~~aqLEell~el~e  304 (705)
                      |+.-..+-.+-.+.+.|..+.+.++.+...|......|++..+...+..++|.+.+..++-
T Consensus       653 e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~  713 (970)
T KOG0946|consen  653 EELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKN  713 (970)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344456677777777788888888888888888888888888888888886665444

>PRK01156 chromosome segregation protein; Provisional

Probab=96.28  E-value=4.4  Score=49.74  Aligned_cols=18  Identities=28%  Similarity=0.512  Sum_probs=8.9

Q ss_pred             hhhhHHHHHHHHHhhhhh
Q 005259          249 EQDQLDEAQGLLKTTIST  266 (705)
Q Consensus       249 lqkQLee~n~~LrsE~ea  266 (705)
                      ....+.+....|+.+.+.
T Consensus       167 ~~~~~~~~~~~~~~ei~~  184 (895)
T PRK01156        167 NYDKLKDVIDMLRAEISN  184 (895)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            334455555555555443

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=96.27  E-value=4.1  Score=49.18  Aligned_cols=331  Identities=18%  Similarity=0.220  Sum_probs=174.7

Q ss_pred             hHHHHHHH---HHhhhhhcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 005259          252 QLDEAQGL---LKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVT  328 (705)
Q Consensus       252 QLee~n~~---LrsE~eal~~ke~qLa~~~~RLrk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ~~l~  328 (705)
                      ++.++...   +|.+++...+...+|......|++....+.....+|=+-+++.+.+-..|-..+..|+.+-...|-.+.
T Consensus        35 ~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs  114 (717)
T PF09730_consen   35 RILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVS  114 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            44444433   445566666667778888888888888888888888777777777777777777777777777777776


Q ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH------
Q 005259          329 KVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGN----LASLQMNMESIMRNRELTETRMIQALREELASV------  398 (705)
Q Consensus       329 q~es~~~ealsak~~eie~Le~rl~~Le~el~~~K~r----leele~E~~rl~e~l~~~ekeilqSLE~eLksl------  398 (705)
                      .+++... .-..++=+|.-|++++..|+.++...-.-    ...+++-++.|+.     |.+-+.+|+++|...      
T Consensus       115 ~Lk~sQv-efE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~qleEALesl~~-----EReqk~~LrkEL~~~~~~~~~  188 (717)
T PF09730_consen  115 VLKQSQV-EFEGLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQLEEALESLKS-----EREQKNALRKELDQHLNIESI  188 (717)
T ss_pred             HHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhcCcccc
Confidence            6665222 11233444444444444444433322111    1112222222222     334456666665541      


Q ss_pred             ------HHHH-----------------H-HHHHHHH--H--------------------------------------HHH
Q 005259          399 ------ERRA-----------------E-EERAAHN--A--------------------------------------TKM  414 (705)
Q Consensus       399 ------q~~l-----------------e-~E~~aH~--a--------------------------------------Tk~  414 (705)
                            .-.+                 + .+...|-  -                                      --.
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lv~DLfSEl~~~Eiq  268 (717)
T PF09730_consen  189 SYLSNLAISLDGLKFSEDPRAATEPNNDDEEENGGLNGGPGLAKGNGDNRMSTPRKSESFSPAPSLVSDLFSELNLSEIQ  268 (717)
T ss_pred             ccccchhhcccccccccccccccCCCCchhhhcchhhccchhcccccccccCCCCCCCCCCCCCcccchhhhhcchHHHH
Confidence                  1111                 0 0111110  0                                      001


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH--HHHcccCChH-------
Q 005259          415 AAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEAR--LKRGQKKSPE-------  485 (705)
Q Consensus       415 ea~~Re~eLEee~~eLseALaelQrkLeEe~aea~eLeqQls~LE~elkqLkQeLq~lE~e--~~r~qek~~~-------  485 (705)
                      .+...+..++.++..|...|.+.|..|+.....+.....++..|-..+..++.-....+..  ..........       
T Consensus       269 KL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~l~~~ke~~~~~d~~~~~~s~~d~~~ye  348 (717)
T PF09730_consen  269 KLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRKLQEDKEQQSAEDSEKERDSHEDGDYYE  348 (717)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhcccccccccccchhh
Confidence            1112233346677888888888888888888777777777777766665555411101100  0111100000       


Q ss_pred             ------H------HHHHHHHHHHHHHHHHHHhhhHHHHh----hhhhHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHH
Q 005259          486 ------E------ANQAIQMQAWQDEVERARQGQRDAEN----KLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKR  549 (705)
Q Consensus       486 ------e------a~q~~qL~~Lk~EL~~~rq~qr~l~~----kl~s~E~elqkLr~e~~~~k~q~~els~q~~~elE~r  549 (705)
                            +      ...+.+...|+.||..++.....+..    .....+.+++.|..++.......++ .......|+..
T Consensus       349 ~Di~~~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~~re-~qeri~~LE~E  427 (717)
T PF09730_consen  349 VDINGLEILECKYKVAVSEVIQLKAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEKSSRE-DQERISELEKE  427 (717)
T ss_pred             hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHH
Confidence                  0      00011233355555554443322221    1223345555555555443332221 12235788888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259          550 YRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQ  589 (705)
Q Consensus       550 l~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~e~  589 (705)
                      ++.++...-+.+..|.....|..+.--.|-.+-+..=.++
T Consensus       428 Lr~l~~~A~E~q~~LnsAQDELvtfSEeLAqLYHHVC~cN  467 (717)
T PF09730_consen  428 LRALSKLAGESQGSLNSAQDELVTFSEELAQLYHHVCMCN  467 (717)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            8888888888888888888888877777766655444443

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=96.22  E-value=1.5  Score=46.21  Aligned_cols=18  Identities=17%  Similarity=0.302  Sum_probs=7.2

Q ss_pred             HHHHHHHHHHHHHHHHcc
Q 005259          463 ATLQQELQDMEARLKRGQ  480 (705)
Q Consensus       463 kqLkQeLq~lE~e~~r~q  480 (705)
                      ..++++...+..+...+.
T Consensus       152 ~~i~e~~~~~~~~~~~L~  169 (239)
T COG1579         152 AEIREEGQELSSKREELK  169 (239)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            334444444443333333

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=96.20  E-value=1.8  Score=44.31  Aligned_cols=124  Identities=19%  Similarity=0.192  Sum_probs=72.7

Q ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhHHHHHHHH
Q 005259          274 LARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYK---SEVTKVESNLAEALAAKNSEIETLVS  350 (705)
Q Consensus       274 La~~~~RLrk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ---~~l~q~es~~~ealsak~~eie~Le~  350 (705)
                      |.....||......++-.+...|+.+..+.+-+..|...+..+|+.+...+   +++..++    .-....+++..-|..
T Consensus        13 L~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk----~~~~~lEE~~~~L~a   88 (193)
T PF14662_consen   13 LQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDLK----TLAKSLEEENRSLLA   88 (193)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence            344455555555555556666666666666666666666666665555442   2222222    222233444446666


Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 005259          351 SIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRA  402 (705)
Q Consensus       351 rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~l  402 (705)
                      ....++++...+-..+..+++++..+...+.-+.++ ...|-.+-.+|+..+
T Consensus        89 q~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~-~~eL~~~~~~Lq~Ql  139 (193)
T PF14662_consen   89 QARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKR-SKELATEKATLQRQL  139 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHH-HHHHHHhhHHHHHHH
Confidence            777777778888888888888888887777776666 444444444444443

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=96.08  E-value=5  Score=48.47  Aligned_cols=37  Identities=24%  Similarity=0.355  Sum_probs=21.8

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcccC
Q 005259          446 AKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKK  482 (705)
Q Consensus       446 aea~eLeqQls~LE~elkqLkQeLq~lE~e~~r~qek  482 (705)
                      .++.-|++|+..++.+-..|-..|+..+.++...+..
T Consensus       265 ~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~a  301 (717)
T PF09730_consen  265 SEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGA  301 (717)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445666666666666666666666666555555543

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>PF13514 AAA_27: AAA domain

Probab=96.04  E-value=6.8  Score=49.58  Aligned_cols=156  Identities=25%  Similarity=0.295  Sum_probs=65.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcccCChHHH--HHH-
Q 005259          419 REVELEHRAAEASMALARIQRIADERTAKA-----GELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEA--NQA-  490 (705)
Q Consensus       419 Re~eLEee~~eLseALaelQrkLeEe~aea-----~eLeqQls~LE~elkqLkQeLq~lE~e~~r~qek~~~ea--~q~-  490 (705)
                      +...++.+...+...+..++..+..-...+     .++..... .-..+..+..++..++..+...-.....+.  ..+ 
T Consensus       809 ~~~~~~~~~~~~~~~l~~~~~~l~~L~~~a~~~~~e~l~~~~~-~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~l~~e~~  887 (1111)
T PF13514_consen  809 QLEELEEELEQAEEELEELEAELAELLEQAGVEDEEELREAEE-RAEERRELREELEDLERQLERQADGLDLEELEEELE  887 (1111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHhh
Confidence            344444444444444444444444333221     23332222 223455666666666666644332221111  001 


Q ss_pred             -HHHHHHHHHHHHHHhhhHHHHhhhhhHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259          491 -IQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMAS  569 (705)
Q Consensus       491 -~qL~~Lk~EL~~~rq~qr~l~~kl~s~E~elqkLr~e~~~~k~q~~els~q~~~elE~rl~eLtE~L~eKQ~qlE~L~~  569 (705)
                       ..+..+..++..+......+..++..+..++..++.++..+.+.             ..+..+..++......++.+..
T Consensus       888 ~~d~~~l~~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~-------------~~~a~l~~e~e~~~a~l~~~~~  954 (1111)
T PF13514_consen  888 ELDPDELEAELEELEEELEELEEELEELQEERAELEQELEALEGD-------------DDAAELEQEREEAEAELEELAE  954 (1111)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-------------chHHHHHHHHHHHHHHHHHHHH
Confidence             01222444444444444444444444444444444444433321             1233444444444455555544


Q ss_pred             HHHHHH---HHHHHHHHHHHHH
Q 005259          570 EKAAAE---FQLEKEMNRLQEV  588 (705)
Q Consensus       570 Er~sL~---~qLE~~~~~~~~e  588 (705)
                      +..++.   .=|+.+..+|+..
T Consensus       955 ~~~~~~la~~lL~~a~~~~r~~  976 (1111)
T PF13514_consen  955 EWAALRLAAELLEEAIERYREE  976 (1111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            433333   3344555555554

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=96.03  E-value=2.1  Score=43.75  Aligned_cols=128  Identities=19%  Similarity=0.237  Sum_probs=63.1

Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHH-------HHHHHHHHHHHHHHHHH
Q 005259          332 SNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRM-------IQALREELASVERRAEE  404 (705)
Q Consensus       332 s~~~ealsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekei-------lqSLE~eLkslq~~le~  404 (705)
                      +++-.-+...++++..|..++...+......+.++-+...++.++.+.+.++.+=.       -..|...|..++..++ 
T Consensus        57 ~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~-  135 (194)
T PF15619_consen   57 AELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQ-  135 (194)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHH-
Confidence            34444445555666666666666666666666666666666555555555421100       0112222222222222 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 005259          405 ERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDME  473 (705)
Q Consensus       405 E~~aH~aTk~ea~~Re~eLEee~~eLseALaelQrkLeEe~aea~eLeqQls~LE~elkqLkQeLq~lE  473 (705)
                                +...+...|+...   .-+-....+.+..+..+..++...+..+..++..+++.|...+
T Consensus       136 ----------~~~~ki~~Lek~l---eL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkEKe  191 (194)
T PF15619_consen  136 ----------EKEKKIQELEKQL---ELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKEKE  191 (194)
T ss_pred             ----------HHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                      1112223332211   2222445556666666666777777777777777777665443

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=95.99  E-value=2.2  Score=43.63  Aligned_cols=77  Identities=21%  Similarity=0.290  Sum_probs=35.0

Q ss_pred             CCchhhhhHHHHHHHHHhhhhhcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 005259          245 PPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYK  324 (705)
Q Consensus       245 k~~~lqkQLee~n~~LrsE~eal~~ke~qLa~~~~RLrk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ  324 (705)
                      |++.|+.++.+++..|..=.    -..-=|..+..|-.+++..+.-..+.|-.++       .....++..|...|...+
T Consensus        13 ki~~L~n~l~elq~~l~~l~----~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll-------~~h~eEvr~Lr~~LR~~q   81 (194)
T PF15619_consen   13 KIKELQNELAELQRKLQELR----KENKTLKQLQKRQEKALQKYEDTEAELPQLL-------QRHNEEVRVLRERLRKSQ   81 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence            34556666655555543321    1122344455555555554444444444433       333344444444444444


Q ss_pred             HHHHHHHH
Q 005259          325 SEVTKVES  332 (705)
Q Consensus       325 ~~l~q~es  332 (705)
                      ......+.
T Consensus        82 ~~~r~~~~   89 (194)
T PF15619_consen   82 EQERELER   89 (194)
T ss_pred             HHHHHHHH
Confidence            44443333

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=95.97  E-value=1.5  Score=42.85  Aligned_cols=96  Identities=21%  Similarity=0.271  Sum_probs=65.6

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 005259          292 NAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQM  371 (705)
Q Consensus       292 ~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le~rl~~Le~el~~~K~rleele~  371 (705)
                      .-..+..|.+-+.....|++++..|+++|...+..+..+.-.    ......++..|+..+..+..++..+...+..+-.
T Consensus         5 ~l~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~d----aEn~k~eie~L~~el~~lt~el~~L~~EL~~l~s   80 (140)
T PF10473_consen    5 FLHVEEKLKESESEKDSLEDHVESLERELEMSQENKECLILD----AENSKAEIETLEEELEELTSELNQLELELDTLRS   80 (140)
T ss_pred             HHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566677777788889999999999999998887776642    2335566666777766666666666666666666


Q ss_pred             HHHHHHHHhhhHHHHHHHHHH
Q 005259          372 NMESIMRNRELTETRMIQALR  392 (705)
Q Consensus       372 E~~rl~e~l~~~ekeilqSLE  392 (705)
                      ++..+...+.....+ +..|+
T Consensus        81 Ek~~L~k~lq~~q~k-v~eLE  100 (140)
T PF10473_consen   81 EKENLDKELQKKQEK-VSELE  100 (140)
T ss_pred             HHHHHHHHHHHHHHH-HHHHH
Confidence            666665555554444 44444

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]

Probab=95.96  E-value=3.7  Score=46.65  Aligned_cols=89  Identities=11%  Similarity=0.041  Sum_probs=72.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 005259          388 IQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQ  467 (705)
Q Consensus       388 lqSLE~eLkslq~~le~E~~aH~aTk~ea~~Re~eLEee~~eLseALaelQrkLeEe~aea~eLeqQls~LE~elkqLkQ  467 (705)
                      +.++..+|+-+.+.+..+...+..+-..+..|...+|.+...+.+++.-+.+++.+.+.+++++..++....  +...++
T Consensus       208 l~~lq~~L~la~~~~~~~~e~~i~~~~~f~~r~~~~E~e~rn~~E~~~lA~r~l~~~kKe~de~k~~~~l~~--~l~~ke  285 (554)
T KOG4677|consen  208 LRSLQDKLQLAEEAVSMHDENVITAVLIFLKRTLSKEIEFRNELEVRQLALRHLIHFKKEIDEQKLLLDLFR--FLDRKE  285 (554)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhHH
Confidence            566667788888888888777778888899999999999999999999999999999999999999887755  556778


Q ss_pred             HHHHHHHHHHH
Q 005259          468 ELQDMEARLKR  478 (705)
Q Consensus       468 eLq~lE~e~~r  478 (705)
                      +|-+....-.+
T Consensus       286 eL~~s~~~e~~  296 (554)
T KOG4677|consen  286 ELALSHYREHL  296 (554)
T ss_pred             HHHHHHHHHhh
Confidence            87655444333

>PRK09039 hypothetical protein; Validated

Probab=95.95  E-value=1.8  Score=47.87  Aligned_cols=136  Identities=17%  Similarity=0.171  Sum_probs=63.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcccCChHHHHHHHHHHHHHHHHHHHHhhhHHHHhhh
Q 005259          435 ARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKL  514 (705)
Q Consensus       435 aelQrkLeEe~aea~eLeqQls~LE~elkqLkQeLq~lE~e~~r~qek~~~ea~q~~qL~~Lk~EL~~~rq~qr~l~~kl  514 (705)
                      +.+-..+.-+..+...++..+..+..++..++.+-.+++..+...........   .++..+..+|...+...       
T Consensus        63 a~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~---~~~~~l~~~L~~~k~~~-------  132 (343)
T PRK09039         63 AELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAE---GRAGELAQELDSEKQVS-------  132 (343)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHH---HHHHHHHHHHHHHHHHH-------
Confidence            33444444455555555555555555555555444444443332111000111   12222344444333332       


Q ss_pred             hhHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259          515 SSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEV  588 (705)
Q Consensus       515 ~s~E~elqkLr~e~~~~k~q~~els~q~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~e  588 (705)
                      .+...++..|+.++..++.|.        ..++..|..+..+..+.+.+++.|..+.+....+--.-+.+|+++
T Consensus       133 se~~~~V~~L~~qI~aLr~Ql--------a~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~~~~~~  198 (343)
T PRK09039        133 ARALAQVELLNQQIAALRRQL--------AALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQELNRYRSE  198 (343)
T ss_pred             HHhhHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            233444455555554444332        444555666666666666677776666666654422233455555

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=95.89  E-value=6.4  Score=48.08  Aligned_cols=92  Identities=18%  Similarity=0.167  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 005259          390 ALREELASVERRAEEERAAHNATKMAAMEREVELEHRA---AEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQ  466 (705)
Q Consensus       390 SLE~eLkslq~~le~E~~aH~aTk~ea~~Re~eLEee~---~eLseALaelQrkLeEe~aea~eLeqQls~LE~elkqLk  466 (705)
                      ..+.....++..+..-...|.......-+....++-+.   ..+.+-..++.+.+.+.......++.+.....--+++++
T Consensus       421 ~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~  500 (980)
T KOG0980|consen  421 AAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLR  500 (980)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            33344555566666666667666665555555554433   445555566666666666666666666666666666666


Q ss_pred             HHHHHHHHHHHHccc
Q 005259          467 QELQDMEARLKRGQK  481 (705)
Q Consensus       467 QeLq~lE~e~~r~qe  481 (705)
                      +++..+..++.+++.
T Consensus       501 ~El~~l~~e~~~lq~  515 (980)
T KOG0980|consen  501 QELALLLIELEELQR  515 (980)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            666555555555553

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=95.87  E-value=4.4  Score=46.02  Aligned_cols=39  Identities=26%  Similarity=0.417  Sum_probs=17.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 005259          284 RLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSV  322 (705)
Q Consensus       284 ~~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~  322 (705)
                      ++....+.+++++..+...++....|+..|..++.++..
T Consensus        39 ~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~   77 (420)
T COG4942          39 QLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIAS   77 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444445554444444444444444444444433

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=95.73  E-value=1.2  Score=42.49  Aligned_cols=110  Identities=15%  Similarity=0.215  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259          352 IDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEAS  431 (705)
Q Consensus       352 l~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le~E~~aH~aTk~ea~~Re~eLEee~~eLs  431 (705)
                      +..++.++..++..++.+......++.++....+.        .+.++..|+.|...|..+-.    .+..+..+...+-
T Consensus         5 ~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~--------a~~Aq~~YE~El~~Ha~~~~----~L~~lr~e~~~~~   72 (132)
T PF07926_consen    5 LSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKI--------AQEAQQKYERELVKHAEDIK----ELQQLREELQELQ   72 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHhHHHHH----HHHHHHHHHHHHH
Confidence            34444444444444444444444444444333333        77788888888888766632    3333333333333


Q ss_pred             HHHHHHHHHHHHHHHHH----HHHHHHHHhHHHHHHHHHHHHHHHH
Q 005259          432 MALARIQRIADERTAKA----GELEQKVAMLEVECATLQQELQDME  473 (705)
Q Consensus       432 eALaelQrkLeEe~aea----~eLeqQls~LE~elkqLkQeLq~lE  473 (705)
                      ..+..+....+.....+    ..|..+-.+|+.++..++.+++++.
T Consensus        73 ~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~  118 (132)
T PF07926_consen   73 QEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLN  118 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444443333    2344444444444445554444444

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=95.70  E-value=10  Score=49.10  Aligned_cols=8  Identities=25%  Similarity=0.534  Sum_probs=5.5

Q ss_pred             CCCCCccc
Q 005259          150 ATPNGEIL  157 (705)
Q Consensus       150 ~~~~~~~~  157 (705)
                      ++|+|-++
T Consensus       636 v~p~~~~~  643 (1353)
T TIGR02680       636 VTADGTLQ  643 (1353)
T ss_pred             eCCCcccc
Confidence            67777764

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=95.65  E-value=6.8  Score=46.65  Aligned_cols=45  Identities=22%  Similarity=0.257  Sum_probs=20.0

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259          291 ENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLA  335 (705)
Q Consensus       291 ~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ~~l~q~es~~~  335 (705)
                      +...||..+..+......+..++..++.++...+..+...+..+.
T Consensus       210 ~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~  254 (650)
T TIGR03185       210 EIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFR  254 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444433344444444444455555555444444444444333

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=95.49  E-value=1.7  Score=41.49  Aligned_cols=123  Identities=16%  Similarity=0.215  Sum_probs=68.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcccCChHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhH
Q 005259          438 QRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSL  517 (705)
Q Consensus       438 QrkLeEe~aea~eLeqQls~LE~elkqLkQeLq~lE~e~~r~qek~~~ea~q~~qL~~Lk~EL~~~rq~qr~l~~kl~s~  517 (705)
                      +..+............++..+..|++........++..|.+...+-...   +..|..++.++...+.....++..+...
T Consensus         9 ~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~---~~~L~~lr~e~~~~~~~~~~l~~~~~~a   85 (132)
T PF07926_consen    9 QSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAED---IKELQQLREELQELQQEINELKAEAESA   85 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333334444455555555555555555555555555555554222222   2345555666655555444444444444


Q ss_pred             HHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259          518 EAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKE  581 (705)
Q Consensus       518 E~elqkLr~e~~~~k~q~~els~q~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~  581 (705)
                      ...+...+..|                  +.+=..|..++.+.+.+++.|.....-|.-|||.+
T Consensus        86 ~~~l~~~e~sw------------------~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~l  131 (132)
T PF07926_consen   86 KAELEESEASW------------------EEQKEQLEKELSELEQRIEDLNEQNKLLHDQLESL  131 (132)
T ss_pred             HHHHHHHHHhH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            44444444444                  33446677777777788888888888888888753

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]

Probab=95.41  E-value=4.8  Score=45.44  Aligned_cols=154  Identities=16%  Similarity=0.217  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Q 005259          286 QEYKSENAQLEELLVAERE-LSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEG  364 (705)
Q Consensus       286 ~elks~~aqLEell~el~e-~~~~L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le~rl~~Le~el~~~K~  364 (705)
                      ..++-+.-.||.++-..++ -..-|.+++..||.+-...|..+.|+..+...-..+.+.+.+.|          +..+=.
T Consensus       139 ~qLr~ek~~lEq~leqeqef~vnKlm~ki~Klen~t~~kq~~leQLRre~V~lentlEQEqEal----------vN~LwK  208 (552)
T KOG2129|consen  139 KQLRHEKLPLEQLLEQEQEFFVNKLMNKIRKLENKTLLKQNTLEQLRREAVQLENTLEQEQEAL----------VNSLWK  208 (552)
T ss_pred             HHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhHHHHHHHHHHHhhHHHHHHHHH----------HHHHHH
Confidence            3333334445554443333 24556667777777777777777777765552222222222222          455667


Q ss_pred             HHHHHHHHHHHHHHHhhh-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259          365 NLASLQMNMESIMRNREL-----------------------TETRMIQALREELASVERRAEEERAAHNATKMAAMEREV  421 (705)
Q Consensus       365 rleele~E~~rl~e~l~~-----------------------~ekeilqSLE~eLkslq~~le~E~~aH~aTk~ea~~Re~  421 (705)
                      ++++++.+++.|+.+++.                       .++.+++-|+.++.-++..+..-...|..--++....++
T Consensus       209 rmdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~  288 (552)
T KOG2129|consen  209 RMDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEEV  288 (552)
T ss_pred             HHHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            788888888888887754                       134444555545444444444333344444444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259          422 ELEHRAAEASMALARIQRIADERTAKAGELEQKVA  456 (705)
Q Consensus       422 eLEee~~eLseALaelQrkLeEe~aea~eLeqQls  456 (705)
                      .+.+++       ..+|++|..+..+-.-|.++++
T Consensus       289 ~~reen-------~rlQrkL~~e~erRealcr~ls  316 (552)
T KOG2129|consen  289 DHREEN-------ERLQRKLINELERREALCRMLS  316 (552)
T ss_pred             hHHHHH-------HHHHHHHHHHHHHHHHHHHHhh
Confidence            444444       4556666666555444444433

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=95.28  E-value=1.8  Score=47.23  Aligned_cols=123  Identities=28%  Similarity=0.343  Sum_probs=80.0

Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 005259          273 RLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSI  352 (705)
Q Consensus       273 qLa~~~~RLrk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le~rl  352 (705)
                      -+.-++..|.+....++.-.+.|...+..+.+..-.+..+...|..++..++........       --..++..+..++
T Consensus       146 ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~-------~D~~eL~~lr~eL  218 (325)
T PF08317_consen  146 LLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIES-------CDQEELEALRQEL  218 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-------cCHHHHHHHHHHH
Confidence            344466677777777777777777766666666666667777777777666654444332       1234555666666


Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 005259          353 DALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAE  403 (705)
Q Consensus       353 ~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le  403 (705)
                      ..+..++...+..+.+++.++..+...+..+..+ ++.+..+|+.++.-.+
T Consensus       219 ~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~-k~~l~~eI~e~~~~~~  268 (325)
T PF08317_consen  219 AEQKEEIEAKKKELAELQEELEELEEKIEELEEQ-KQELLAEIAEAEKIRE  268 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence            6666677777777777777777777777666666 6666666666665544

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=95.19  E-value=6.2  Score=43.34  Aligned_cols=7  Identities=0%  Similarity=-0.220  Sum_probs=2.7

Q ss_pred             CCCCchh
Q 005259          243 DDPPTKE  249 (705)
Q Consensus       243 ~ek~~~l  249 (705)
                      .+.+..+
T Consensus        68 G~~L~~l   74 (423)
T TIGR01843        68 GQVLVEL   74 (423)
T ss_pred             CCeEEEE
Confidence            3333333

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.19  E-value=8.5  Score=44.93  Aligned_cols=83  Identities=14%  Similarity=0.157  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259          350 SSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAE  429 (705)
Q Consensus       350 ~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le~E~~aH~aTk~ea~~Re~eLEee~~e  429 (705)
                      .+|-.|+.+++.++..+...++|++++...+++.-.- .+.++.+    +.++.-|+..++-........+.+||++|..
T Consensus       107 ~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~-~~~~E~q----R~rlr~elKe~KfRE~RllseYSELEEENIs  181 (772)
T KOG0999|consen  107 QKILELENELKQLRQELTNVQEENERLEKVHSDLKES-NAAVEDQ----RRRLRDELKEYKFREARLLSEYSELEEENIS  181 (772)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-chhhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence            5788888899999999999999999988888874111 2333322    3344445566666666677789999999966


Q ss_pred             HHHHHHHH
Q 005259          430 ASMALARI  437 (705)
Q Consensus       430 LseALael  437 (705)
                      |...++.+
T Consensus       182 LQKqVs~L  189 (772)
T KOG0999|consen  182 LQKQVSNL  189 (772)
T ss_pred             HHHHHHHH
Confidence            66555444

>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=95.07  E-value=5.1  Score=45.37  Aligned_cols=143  Identities=15%  Similarity=0.166  Sum_probs=100.3

Q ss_pred             hhhHHhhhhcCCCCchhhhhHHHHHHHHHhh----hhhcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 005259          233 NKRKQQALKADDPPTKEQDQLDEAQGLLKTT----ISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRS  308 (705)
Q Consensus       233 ~~~~~~~~~~~ek~~~lqkQLee~n~~LrsE----~eal~~ke~qLa~~~~RLrk~~~elks~~aqLEell~el~e~~~~  308 (705)
                      -+.+.|+..|.+.+.-.++.-.|+-.++--+    ++.+++++.||.....+|+.-..-+++....|+.-.++..+..-.
T Consensus       264 Eq~reqElraeE~l~Ee~rrhrEil~k~eReasle~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~  343 (502)
T KOG0982|consen  264 EQRREQELRAEESLSEEERRHREILIKKEREASLEKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEA  343 (502)
T ss_pred             HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence            5678888899999888888888888777665    588999999999999999999999999999999987777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH--------hHHHHHHHHHHHHHHH
Q 005259          309 YEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSE--------GNLASLQMNMESIMRN  379 (705)
Q Consensus       309 L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le~rl~~Le~el~~~K--------~rleele~E~~rl~e~  379 (705)
                      +..++...|....+.=..+.+-+.    .-.+-...|++|-..+..++.......        .|+.+++.+.+++.+.
T Consensus       344 lrlql~~eq~l~~rm~d~Lrrfq~----ekeatqELieelrkelehlr~~kl~~a~p~rgrsSaRe~eleqevkrLrq~  418 (502)
T KOG0982|consen  344 LRLQLICEQKLRVRMNDILRRFQE----EKEATQELIEELRKELEHLRRRKLVLANPVRGRSSAREIELEQEVKRLRQP  418 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHHHHhhccccCchhHHHHHHHHHHHHhccc
Confidence            777777776665555554444333    222334455555544444443322222        5666666666665543

>PF14992 TMCO5: TMCO5 family

Probab=94.97  E-value=6.6  Score=42.44  Aligned_cols=37  Identities=22%  Similarity=0.344  Sum_probs=19.9

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 005259          367 ASLQMNMESIMRNRELTETRMIQALREELASVERRAEE  404 (705)
Q Consensus       367 eele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le~  404 (705)
                      .++-+.+..+..++...|.. +++|+.++.-.-..++.
T Consensus        14 Q~ldE~Nq~lL~ki~~~E~~-iq~Le~Eit~~~~~~~~   50 (280)
T PF14992_consen   14 QRLDEANQSLLQKIQEKEGA-IQSLEREITKMDHIADR   50 (280)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHccccCc
Confidence            33444455555555555555 66666665555444433

>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins

Probab=94.96  E-value=11  Score=45.09  Aligned_cols=38  Identities=16%  Similarity=0.172  Sum_probs=17.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259          409 HNATKMAAMEREVELEHRAAEASMALARIQRIADERTA  446 (705)
Q Consensus       409 H~aTk~ea~~Re~eLEee~~eLseALaelQrkLeEe~a  446 (705)
                      |.....++....++||++...-+.--+.++..|+...+
T Consensus       329 h~~~~~qL~~qVAsLQeev~sq~qEqaiLq~SLqDK~A  366 (739)
T PF07111_consen  329 HRDSVKQLRGQVASLQEEVASQQQEQAILQHSLQDKAA  366 (739)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            44444444455666655443333334444444444443

The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=94.92  E-value=11  Score=44.66  Aligned_cols=46  Identities=20%  Similarity=0.331  Sum_probs=41.0

Q ss_pred             HhHhhhhhhhhhHhhhcchhHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 005259          639 AKLLDSGAVRATRFLWRYPIARIILLFYLVFVHLFLMYLLHRLQEQA  685 (705)
Q Consensus       639 a~~lDs~slr~g~fLRRyP~ARl~vlvYmvlLHLWVm~VL~~~~~~~  685 (705)
                      .+.+|.+.+-+|+|+-.+-++|.+||||+|+||..||+||+ +-+.+
T Consensus       575 l~~~~~~~~s~~r~~l~nk~~r~~~~~y~i~lh~~v~~~l~-~~~~s  620 (629)
T KOG0963|consen  575 LGSFERITLSLGRTLLFNKMTRTLFFFYTIGLHLLVFIVLY-LGAAS  620 (629)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhh
Confidence            35678999999999999999999999999999999999999 55543

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=94.86  E-value=5.4  Score=40.93  Aligned_cols=95  Identities=15%  Similarity=0.191  Sum_probs=57.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 005259          281 LSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAA  360 (705)
Q Consensus       281 Lrk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le~rl~~Le~el~  360 (705)
                      +++......+.+..+...+..+.+-...++..+..|+..|..       -+. ....|...+..+..++..+..+.-+..
T Consensus        39 mkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~-------y~k-dK~~L~~~k~rl~~~ek~l~~Lk~e~e  110 (201)
T PF13851_consen   39 MKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKN-------YEK-DKQSLQNLKARLKELEKELKDLKWEHE  110 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-------HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444444444444445555555555443       332 222344455666677788888888888


Q ss_pred             HHHhHHHHHHHHHHHHHHHhhhH
Q 005259          361 LSEGNLASLQMNMESIMRNRELT  383 (705)
Q Consensus       361 ~~K~rleele~E~~rl~e~l~~~  383 (705)
                      .+..+..+++.+.+.|....+..
T Consensus       111 vL~qr~~kle~ErdeL~~kf~~~  133 (201)
T PF13851_consen  111 VLEQRFEKLEQERDELYRKFESA  133 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888888888777763

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=94.80  E-value=3.3  Score=45.25  Aligned_cols=23  Identities=17%  Similarity=0.085  Sum_probs=11.3

Q ss_pred             cCCCCCCcccccccccccCccCc
Q 005259          115 ERDAPSIPLTEQSKDMSKHDADR  137 (705)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~  137 (705)
                      +.|.+.|.|...=++++-+--|+
T Consensus         8 ~~~~~~isL~~FL~~~~I~F~dD   30 (325)
T PF08317_consen    8 DEDYEPISLQDFLNMTGIRFYDD   30 (325)
T ss_pred             cCCCCCcCHHHHHHHhCceeCCC
Confidence            44555555555555544444333

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=94.78  E-value=0.26  Score=49.87  Aligned_cols=106  Identities=25%  Similarity=0.313  Sum_probs=43.2

Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 005259          273 RLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEA-------RIKQLEQELSVYKSEVTKVESNLAEALAAKNSEI  345 (705)
Q Consensus       273 qLa~~~~RLrk~~~elks~~aqLEell~el~e~~~~L~~-------rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~ei  345 (705)
                      .+.....+|++.++++.+....+...|..+......++.       +|..|+.++...+..+.....    .+..++..+
T Consensus        71 ~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~----~l~ek~k~~  146 (194)
T PF08614_consen   71 SLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEE----ELKEKNKAN  146 (194)
T ss_dssp             -------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence            344445556666666666655555555444444333333       444444444444444444333    444567777


Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 005259          346 ETLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL  382 (705)
Q Consensus       346 e~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~  382 (705)
                      +.|.+++.+|+-++..+..++.+++.|++.|-++.-.
T Consensus       147 e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~  183 (194)
T PF08614_consen  147 EILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQ  183 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777888888888888888888888887777666544

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PF06705 SF-assemblin: SF-assemblin/beta giardin

Probab=94.69  E-value=6.6  Score=41.15  Aligned_cols=127  Identities=20%  Similarity=0.302  Sum_probs=75.4

Q ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 005259          272 ARLARVCAGLSSRLQEYKSENAQLEELLVAEREL--------SRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNS  343 (705)
Q Consensus       272 ~qLa~~~~RLrk~~~elks~~aqLEell~el~e~--------~~~L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~  343 (705)
                      .++..-...+...+..+..++..|+..+......        ...|...+..|...+..++..+...+..+..+      
T Consensus        81 ~~~~~~~~~~~~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~Er~~R~erE~~i~kr------  154 (247)
T PF06705_consen   81 NQISEKQEQLQSRLDSLNDRIEALEEEIQEEKEERPQDIEELNQELVRELNELQEAFENERNEREEREENILKR------  154 (247)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence            4444555666667777777777777766655543        44566677777777777777766666655533      


Q ss_pred             HHHHHHHHHHHHHHHH----HHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259          344 EIETLVSSIDALKKQA----ALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAA  408 (705)
Q Consensus       344 eie~Le~rl~~Le~el----~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le~E~~a  408 (705)
                          |......+...+    ..-...+..+..+.+.+...............-.+|++++.++..|..+
T Consensus       155 ----l~e~~~~l~~~i~~Ek~~Re~~~~~l~~~le~~~~~~~~~~e~f~~~v~~Ei~~lk~~l~~e~~~  219 (247)
T PF06705_consen  155 ----LEEEENRLQEKIEKEKNTRESKLSELRSELEEVKRRREKGDEQFQNFVLEEIAALKNALALESQE  219 (247)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                222223333333    3333445555555555554444445553444668899999998887765

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=94.68  E-value=9.4  Score=42.89  Aligned_cols=16  Identities=19%  Similarity=0.208  Sum_probs=9.0

Q ss_pred             HHHHHHHHHHHHHHHH
Q 005259          285 LQEYKSENAQLEELLV  300 (705)
Q Consensus       285 ~~elks~~aqLEell~  300 (705)
                      ...+.+-+-+|++...
T Consensus        66 ~~~lr~gVfqlddi~~   81 (499)
T COG4372          66 NRNLRSGVFQLDDIRP   81 (499)
T ss_pred             hhhHHhhhhhHHHHHH
Confidence            3455566666666433

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=94.61  E-value=17  Score=45.50  Aligned_cols=42  Identities=14%  Similarity=0.293  Sum_probs=20.3

Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 005259          333 NLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNME  374 (705)
Q Consensus       333 ~~~ealsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~  374 (705)
                      .+...+++.++++..+..++..-+.++...+....+.-.+..
T Consensus       231 k~~~els~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~  272 (1141)
T KOG0018|consen  231 KANDELSRLNAEIPKLKERMDKKEREIRVRKKERGKIRRELQ  272 (1141)
T ss_pred             hhhHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            344444555555555555555555555555544444444433

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=94.54  E-value=0.01  Score=70.91  Aligned_cols=26  Identities=31%  Similarity=0.390  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259          544 MELEKRYRELTDLLYYKQTQLETMAS  569 (705)
Q Consensus       544 ~elE~rl~eLtE~L~eKQ~qlE~L~~  569 (705)
                      ..|+..++...+.+..-+.+++.+..
T Consensus       498 ~~Le~~~~~~~~~~~~lq~qle~lq~  523 (713)
T PF05622_consen  498 EKLEEENREANEKILELQSQLEELQK  523 (713)
T ss_dssp             --------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555555555555555554443

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]

Probab=94.51  E-value=6.6  Score=40.37  Aligned_cols=48  Identities=25%  Similarity=0.263  Sum_probs=34.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259          541 EEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEV  588 (705)
Q Consensus       541 q~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~e  588 (705)
                      |..-.|+..|+.|++.|-+-.+..+-+..-...|....+++.-++...
T Consensus       137 q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~  184 (205)
T KOG1003|consen  137 QKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEA  184 (205)
T ss_pred             hhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHH
Confidence            334678888899999888888777777776667666666666554443

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein

Probab=94.40  E-value=7.2  Score=40.33  Aligned_cols=154  Identities=17%  Similarity=0.216  Sum_probs=66.3

Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 005259          270 KEARLARVCAGLSSRLQEYKSENAQLEELLVAER---ELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIE  346 (705)
Q Consensus       270 ke~qLa~~~~RLrk~~~elks~~aqLEell~el~---e~~~~L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie  346 (705)
                      |.+.++-++..|++...++..+...+=.+=+.++   .........+..|+..+..-.-++..-    ...+..+.++++
T Consensus         8 k~GEIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~c----e~ELqr~~~Ea~   83 (202)
T PF06818_consen    8 KSGEISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVC----ENELQRKKNEAE   83 (202)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHh----HHHHHHHhCHHH
Confidence            5566777888888888777766443332211111   112222223333333222211111111    122223344444


Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHhhhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259          347 TLVSSIDALKKQAALSEGNLASLQ---MNMESIMRNRELT-----ETRMIQALREELASVERRAEEERAAHNATKMAAME  418 (705)
Q Consensus       347 ~Le~rl~~Le~el~~~K~rleele---~E~~rl~e~l~~~-----ekeilqSLE~eLkslq~~le~E~~aH~aTk~ea~~  418 (705)
                      -|...+..++.++..++..+..+-   .+...+...-...     ....+.+|..++..++..+..|...+......|..
T Consensus        84 lLrekl~~le~El~~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~er~~~e~q~~~Fe~  163 (202)
T PF06818_consen   84 LLREKLGQLEAELAELREELACAGRLKRQCQLLSESDEAKAQRQAGEDELGSLRREVERLRAELQRERQRREEQRSSFEQ  163 (202)
T ss_pred             HhhhhhhhhHHHHHHHHHHHHhhccchhhhccccccchhHHhhccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            455555555555555555554441   1110000000000     01125556666677777766666655444444444


Q ss_pred             HHHHHHHHH
Q 005259          419 REVELEHRA  427 (705)
Q Consensus       419 Re~eLEee~  427 (705)
                      -=..+.+++
T Consensus       164 ER~~W~eEK  172 (202)
T PF06818_consen  164 ERRTWQEEK  172 (202)
T ss_pred             HHHHHHHHH
Confidence            434444444

Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=94.39  E-value=9.5  Score=41.70  Aligned_cols=67  Identities=18%  Similarity=0.256  Sum_probs=40.5

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHcccCChHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhHHHHHHHHHHHHHH
Q 005259          454 KVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAA  530 (705)
Q Consensus       454 Qls~LE~elkqLkQeLq~lE~e~~r~qek~~~ea~q~~qL~~Lk~EL~~~rq~qr~l~~kl~s~E~elqkLr~e~~~  530 (705)
                      ++..+-.....|+..|..|-......+..+.-..   .-..+++.|+...       .-++..+|.+...++..|..
T Consensus       203 ~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSN---e~F~tfk~Emekm-------~Kk~kklEKE~~~~k~k~e~  269 (309)
T PF09728_consen  203 QVQTLKETEKELREQLNLYSEKFEEFQDTLNKSN---EVFETFKKEMEKM-------SKKIKKLEKENQTWKSKWEK  269 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence            6666666667777777777766666653111111   1123466666543       34556688888888888855

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=94.37  E-value=1.8  Score=46.43  Aligned_cols=55  Identities=29%  Similarity=0.334  Sum_probs=40.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 005259          543 HMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQSEAERSRV  597 (705)
Q Consensus       543 ~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~e~~~~~~sr~  597 (705)
                      +..|++.-.-|+-.|.-|..++..|+.-.++-..++++++..+.....+++++..
T Consensus        76 c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~  130 (307)
T PF10481_consen   76 CENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQ  130 (307)
T ss_pred             HHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556666677777888888888888888888888888887766666666666543

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=94.32  E-value=9.9  Score=41.62  Aligned_cols=24  Identities=17%  Similarity=0.126  Sum_probs=11.8

Q ss_pred             HHHHhHHHHHHHHHHHHHHHhhhH
Q 005259          360 ALSEGNLASLQMNMESIMRNRELT  383 (705)
Q Consensus       360 ~~~K~rleele~E~~rl~e~l~~~  383 (705)
                      ..+..++..+++||..|..+.+++
T Consensus       163 e~Lq~Klk~LEeEN~~LR~Ea~~L  186 (306)
T PF04849_consen  163 EALQEKLKSLEEENEQLRSEASQL  186 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344444444555555555555544

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=94.32  E-value=12  Score=42.68  Aligned_cols=39  Identities=18%  Similarity=0.351  Sum_probs=14.8

Q ss_pred             hHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 005259          364 GNLASLQMNMESIMRNRELTETRMIQALREELASVERRAE  403 (705)
Q Consensus       364 ~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le  403 (705)
                      .++.+++.++..+.....+..-. +..++.+|..++..+.
T Consensus       254 ~~l~~l~~~l~~l~~~y~~~hP~-v~~l~~qi~~l~~~l~  292 (498)
T TIGR03007       254 GRIEALEKQLDALRLRYTDKHPD-VIATKREIAQLEEQKE  292 (498)
T ss_pred             HHHHHHHHHHHHHHHHhcccChH-HHHHHHHHHHHHHHHH
Confidence            33333444433333333332222 3333344444444443

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins

Probab=94.27  E-value=16  Score=43.85  Aligned_cols=38  Identities=16%  Similarity=0.087  Sum_probs=30.8

Q ss_pred             HHHHHHHhHhhhhhhhhhHhhhcchhHHHHHHHHHHHH
Q 005259          633 VQLQKAAKLLDSGAVRATRFLWRYPIARIILLFYLVFV  670 (705)
Q Consensus       633 ~~vk~Aa~~lDs~slr~g~fLRRyP~ARl~vlvYmvlL  670 (705)
                      -.|..|+.-|-+.+.|++...||-++.|-++.--+++.
T Consensus       422 a~ve~a~aRL~sL~~RlSyAvrrv~tiqGL~Ark~Ala  459 (739)
T PF07111_consen  422 AKVEQALARLPSLSNRLSYAVRRVHTIQGLMARKLALA  459 (739)
T ss_pred             HHHHHHHHHHHHHhHHHHHHhcccchhHHHHHHHHHHH
Confidence            35788888888999999999999999888776666543

The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=94.22  E-value=10  Score=41.43  Aligned_cols=114  Identities=17%  Similarity=0.162  Sum_probs=73.3

Q ss_pred             HHHHhhhhhcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259          258 GLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEA  337 (705)
Q Consensus       258 ~~LrsE~eal~~ke~qLa~~~~RLrk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ~~l~q~es~~~ea  337 (705)
                      +.+..+...+.-+-.+|......++..+.-.......||.++|+++-..+.+......+..+-..   .+..+.+.|...
T Consensus        39 k~~~k~~~~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~~~eee~---kR~el~~kFq~~  115 (309)
T PF09728_consen   39 KRLQKQLKKLQKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEESKRRAREEEE---KRKELSEKFQAT  115 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence            33444444444555667777777777777777888899999999888888888876666555433   334455566666


Q ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 005259          338 LAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNME  374 (705)
Q Consensus       338 lsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~  374 (705)
                      +......|+.-......+..+-..+..++..+.++-+
T Consensus       116 L~dIq~~~ee~~~~~~k~~~eN~~L~eKlK~l~eQye  152 (309)
T PF09728_consen  116 LKDIQAQMEEQSERNIKLREENEELREKLKSLIEQYE  152 (309)
T ss_pred             HHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666666655555555566666666666655555533

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=94.05  E-value=8.2  Score=39.65  Aligned_cols=76  Identities=17%  Similarity=0.284  Sum_probs=42.6

Q ss_pred             HHHHHHHHhhhHHHHhhhhhHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259          497 QDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKA  572 (705)
Q Consensus       497 k~EL~~~rq~qr~l~~kl~s~E~elqkLr~e~~~~k~q~~els~q~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~  572 (705)
                      +.+|..++...+.+..++..++.+-..|...-...-...-.=..-....|++++..|++.|..+..++.++..-.+
T Consensus        99 ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~evl~~~n  174 (201)
T PF13851_consen   99 EKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNEVLAAAN  174 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            3344444433344444455555555555544332221110001122578899999999999999999988877443

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=93.97  E-value=11  Score=40.96  Aligned_cols=26  Identities=23%  Similarity=0.325  Sum_probs=15.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259          562 TQLETMASEKAAAEFQLEKEMNRLQE  587 (705)
Q Consensus       562 ~qlE~L~~Er~sL~~qLE~~~~~~~~  587 (705)
                      ..+-.|.+|.--|+-||+.+-.+++.
T Consensus       221 ERL~QlqsEN~LLrQQLddA~~K~~~  246 (305)
T PF14915_consen  221 ERLSQLQSENMLLRQQLDDAHNKADN  246 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555666666666666665554

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=93.89  E-value=18  Score=43.05  Aligned_cols=35  Identities=20%  Similarity=0.128  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259          548 KRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEM  582 (705)
Q Consensus       548 ~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~  582 (705)
                      ..+|+.=+.|+..=...-.+..|..-|.-|++...
T Consensus       557 a~lh~~c~~Li~~v~~tG~~~rEirdLe~qI~~e~  591 (594)
T PF05667_consen  557 ASLHENCSQLIETVEETGTISREIRDLEEQIDTES  591 (594)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence            34566666667666666667777777777766543

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=93.89  E-value=20  Score=43.42  Aligned_cols=31  Identities=16%  Similarity=0.246  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259          559 YKQTQLETMASEKAAAEFQLEKEMNRLQEVQ  589 (705)
Q Consensus       559 eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~e~  589 (705)
                      .++.++..|+.|....+-.++.+..++.+..
T Consensus       373 ~~~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~  403 (754)
T TIGR01005       373 EQQVDLDALQRDAAAKRQLYESYLTNYRQAA  403 (754)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4456777777777777777777777776654

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]

Probab=93.83  E-value=27  Score=44.81  Aligned_cols=66  Identities=17%  Similarity=0.216  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHHHhhhHHHHhhhhhHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHH
Q 005259          493 MQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQ  561 (705)
Q Consensus       493 L~~Lk~EL~~~rq~qr~l~~kl~s~E~elqkLr~e~~~~k~q~~els~q~~~elE~rl~eLtE~L~eKQ  561 (705)
                      ++.+..|+..+..+.  +.+.+.+...+..+|..+.......-. .--....+|+.++..++.+|.+++
T Consensus      1017 ~~e~~re~~~ld~Qi--~~~~~~~~~ee~~~L~~~~~~l~se~~-~~lg~~ke~e~~i~~~k~eL~~~~ 1082 (1294)
T KOG0962|consen 1017 LKELERELSELDKQI--LEADIKSVKEERVKLEEEREKLSSEKN-LLLGEMKQYESQIKKLKQELREKD 1082 (1294)
T ss_pred             HHHHHHHHHHHHHHH--HHhHHHHHHHHHHHHHHHHHHhhhHhh-HHHHHHHHHHHHHHHHHHHhhhhh
Confidence            444555555554433  334456666666677666644331110 011235889999999999999777

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=93.74  E-value=16  Score=41.82  Aligned_cols=32  Identities=9%  Similarity=0.148  Sum_probs=21.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259          558 YYKQTQLETMASEKAAAEFQLEKEMNRLQEVQ  589 (705)
Q Consensus       558 ~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~e~  589 (705)
                      -.++.++..|..+....+...+.+..++.+..
T Consensus       351 ~~~~~el~~L~Re~~~~~~~Y~~l~~r~eea~  382 (498)
T TIGR03007       351 PEVEAELTQLNRDYEVNKSNYEQLLTRRESAE  382 (498)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35566677777777777777777666666543

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>PRK10884 SH3 domain-containing protein; Provisional

Probab=93.54  E-value=1.1  Score=46.22  Aligned_cols=49  Identities=16%  Similarity=0.281  Sum_probs=29.9

Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 005259          332 SNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNR  380 (705)
Q Consensus       332 s~~~ealsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l  380 (705)
                      .++.+.+...+..+.+|..+...|.+++..++.+++.++.+++.+++..
T Consensus       121 ~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~  169 (206)
T PRK10884        121 AEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTI  169 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344444555556777777777777777777777666666666544

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=93.51  E-value=26  Score=43.56  Aligned_cols=12  Identities=17%  Similarity=0.219  Sum_probs=4.9

Q ss_pred             CchhhhhHHHHH
Q 005259          246 PTKEQDQLDEAQ  257 (705)
Q Consensus       246 ~~~lqkQLee~n  257 (705)
                      +..+..++.++.
T Consensus       234 ~e~l~~~~~el~  245 (908)
T COG0419         234 IEALEERLAELE  245 (908)
T ss_pred             HHHHHHHHHHHH
Confidence            444444443333

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=93.46  E-value=23  Score=42.85  Aligned_cols=25  Identities=16%  Similarity=0.251  Sum_probs=17.3

Q ss_pred             Ccchhhhhhhhccccccccc-ccccc
Q 005259           88 DTATLAVEKETITTGKTQKN-GEQQQ  112 (705)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~-~~~~~  112 (705)
                      +...+.+|.+.|.|..++.- .+++.
T Consensus        70 ~~~~v~tqieiL~Sr~v~~~VV~~L~   95 (754)
T TIGR01005        70 DETGVATQVEILSSNEILKQVVDKLG   95 (754)
T ss_pred             cHHHHHHHHHHHccHHHHHHHHHHcC
Confidence            44567888899999988854 44443

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=93.41  E-value=14  Score=40.26  Aligned_cols=168  Identities=14%  Similarity=0.145  Sum_probs=83.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhH--
Q 005259          306 SRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELT--  383 (705)
Q Consensus       306 ~~~L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~--  383 (705)
                      ..++..+...|+..|.---+.+++.-..|.       .++..|..+.+.|..++...|..=+.++.++.+..-++..-  
T Consensus        33 iei~Kekn~~Lqk~lKLneE~ltkTi~qy~-------~QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rsRLaaAi~  105 (305)
T PF14915_consen   33 IEILKEKNDDLQKSLKLNEETLTKTIFQYN-------GQLNVLKAENTMLNSKLEKEKQNKERLETEIESYRSRLAAAIQ  105 (305)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHh-------hhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            444555555666665543343444433333       34445555566666666666666666666666555555441  


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhH
Q 005259          384 -ETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKA----GELEQKVAML  458 (705)
Q Consensus       384 -ekeilqSLE~eLkslq~~le~E~~aH~aTk~ea~~Re~eLEee~~eLseALaelQrkLeEe~aea----~eLeqQls~L  458 (705)
                       ..+...+.+    .++-++..+...|-..+....-....|...|..|++-|..++.++.--..+.    +.|+++--.+
T Consensus       106 d~dqsq~skr----dlelafqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~l  181 (305)
T PF14915_consen  106 DHDQSQTSKR----DLELAFQRARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLAL  181 (305)
T ss_pred             hHHHHHhhHH----HHHHHHHHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             111111111    1111222222323333333333455566677777777777777665544333    5566654444


Q ss_pred             HH---HHHHHHHHHHHHHHHHHHcccCCh
Q 005259          459 EV---ECATLQQELQDMEARLKRGQKKSP  484 (705)
Q Consensus       459 E~---elkqLkQeLq~lE~e~~r~qek~~  484 (705)
                      |.   ++.+.+..+..++..+...+.++.
T Consensus       182 E~~QrdL~Qtq~q~KE~e~m~qne~~kv~  210 (305)
T PF14915_consen  182 ESVQRDLSQTQCQIKEIEHMYQNEQDKVN  210 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            33   455555555555555555544333

>PF13514 AAA_27: AAA domain

Probab=93.35  E-value=30  Score=43.93  Aligned_cols=139  Identities=20%  Similarity=0.261  Sum_probs=76.3

Q ss_pred             CCCCchhhhhHHHHHHHHHhhh------hhcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH------HHHHH-----
Q 005259          243 DDPPTKEQDQLDEAQGLLKTTI------STGQSKEARLARVCAGLSSRLQEYKSENAQLEELLV------AEREL-----  305 (705)
Q Consensus       243 ~ek~~~lqkQLee~n~~LrsE~------eal~~ke~qLa~~~~RLrk~~~elks~~aqLEell~------el~e~-----  305 (705)
                      +-.+|++-++++++.+.++.-.      ..+...-.++......|+.....+..+...||.+.+      +.+..     
T Consensus       149 ~~~in~~l~~l~e~~~~l~~~~~~~~~y~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~ler~~~~~p~~~~~~~l~~~l~  228 (1111)
T PF13514_consen  149 KPEINQALKELKELERELREAEVRAAEYQELQQALEEAEEELEELRAELKELRAELRRLERLRRAWPLLAELQQLEAELA  228 (1111)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            3467888889999988888773      223333444555556666666667777777766544      22222     


Q ss_pred             ---------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHhhhHHHHHHH---HHHHHHHHHHHHH
Q 005259          306 ---------------SRSYEARIKQLEQELSVYKSEVTKVESNLA-----EALAAKNSEIETLV---SSIDALKKQAALS  362 (705)
Q Consensus       306 ---------------~~~L~~rl~~LQaeL~~EQ~~l~q~es~~~-----ealsak~~eie~Le---~rl~~Le~el~~~  362 (705)
                                     ...+..++..++..+...+..+...+..+.     ..+-...+.|..|.   ..+.....++...
T Consensus       229 ~l~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~ll~~~~~I~~L~~~~~~~~~~~~dl~~~  308 (1111)
T PF13514_consen  229 ELGEVPDFPEDGAERLEQLEEELAEAQAQLERLQEELAQLEEELDALPVDEELLAHAAEIEALEEQRGEYRKARQDLPRL  308 (1111)
T ss_pred             hcCCcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                           122222444444455444444444443221     11222344444444   3445555666666


Q ss_pred             HhHHHHHHHHHHHHHHHhh
Q 005259          363 EGNLASLQMNMESIMRNRE  381 (705)
Q Consensus       363 K~rleele~E~~rl~e~l~  381 (705)
                      ...+..+..++..+...+.
T Consensus       309 ~~e~~~~~~~~~~~~~~lg  327 (1111)
T PF13514_consen  309 EAELAELEAELRALLAQLG  327 (1111)
T ss_pred             HHHHHHHHHHHHHHHHhcC
Confidence            6667777777666666665

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=93.25  E-value=22  Score=41.95  Aligned_cols=37  Identities=11%  Similarity=0.143  Sum_probs=18.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259          544 MELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEK  580 (705)
Q Consensus       544 ~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~  580 (705)
                      +.+...+.++.+.|.+-......+.....+|...-.+
T Consensus       375 S~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~  411 (560)
T PF06160_consen  375 SEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKE  411 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444455555555555555444444444444443333

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>PRK10929 putative mechanosensitive channel protein; Provisional

Probab=93.16  E-value=33  Score=43.78  Aligned_cols=34  Identities=6%  Similarity=0.064  Sum_probs=16.8

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcc
Q 005259          447 KAGELEQKVAMLEVECATLQQELQDMEARLKRGQ  480 (705)
Q Consensus       447 ea~eLeqQls~LE~elkqLkQeLq~lE~e~~r~q  480 (705)
                      +...+.++....+..+.+++|.+..++++..-++
T Consensus       280 ~~n~l~~~~~~~~~~l~~~~q~~~~i~eQi~~l~  313 (1109)
T PRK10929        280 RMDLIASQQRQAASQTLQVRQALNTLREQSQWLG  313 (1109)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3344444444445555555555555555544443

>smart00787 Spc7 Spc7 kinetochore protein

Probab=93.13  E-value=7.4  Score=42.65  Aligned_cols=121  Identities=19%  Similarity=0.262  Sum_probs=65.7

Q ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 005259          274 LARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSID  353 (705)
Q Consensus       274 La~~~~RLrk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le~rl~  353 (705)
                      |.-++..|.+....++.-...|...+..+.+..-.|..+...|..++..++.....+++       -..++...+..++.
T Consensus       142 legLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~-------~d~~eL~~lk~~l~  214 (312)
T smart00787      142 LEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELED-------CDPTELDRAKEKLK  214 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh-------CCHHHHHHHHHHHH
Confidence            44455555555555555555555555555555555555555555555554433333322       12234445555566


Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 005259          354 ALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRA  402 (705)
Q Consensus       354 ~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~l  402 (705)
                      ....++...+..+++++.++..+...+.....+ ++.++.+|+.++.-.
T Consensus       215 ~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~-k~e~~~~I~~ae~~~  262 (312)
T smart00787      215 KLLQEIMIKVKKLEELEEELQELESKIEDLTNK-KSELNTEIAEAEKKL  262 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence            666666666666666666666666666665555 555555555555543

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.09  E-value=27  Score=42.66  Aligned_cols=36  Identities=11%  Similarity=-0.127  Sum_probs=18.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259          549 RYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNR  584 (705)
Q Consensus       549 rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~  584 (705)
                      .+-.++++-.+++--+.....-..+|..-|+.+...
T Consensus       905 ki~s~kqeqee~~v~~~~~~~~i~alk~~l~dL~q~  940 (970)
T KOG0946|consen  905 KIVSNKQEQEELLVLLADQKEKIQALKEALEDLNQP  940 (970)
T ss_pred             cccchhhhHHHHHHHHhhHHHHHHHHHHHHHHhCCC
Confidence            444455555555544444444555555555555443

>PF15254 CCDC14: Coiled-coil domain-containing protein 14

Probab=93.00  E-value=27  Score=42.46  Aligned_cols=44  Identities=32%  Similarity=0.387  Sum_probs=32.8

Q ss_pred             HhhhhHHHHhhhhhcccCCCC----CCCCCCCcchhhhhchHHHhhhh
Q 005259           15 VDRRAKLVVNELADEQSDFQT----PASNGQGSQAKKIKSRIKAQRRH   58 (705)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~k~~~~~~~~~~~~   58 (705)
                      .||=|-|.-.=|--|.+.+-.    +-+|+..=.+|+-.+||||-+++
T Consensus        12 LDrCAsLL~dILrnE~sGsE~~yse~r~nsrplegK~~~~KKKG~~Kh   59 (861)
T PF15254_consen   12 LDRCASLLRDILRNEDSGSETVYSENRSNSRPLEGKRNGSKKKGPEKH   59 (861)
T ss_pred             hHHHHHHHHHhhhcccCCCcccccccccCCCcCCcccccccCCCCccc
Confidence            588888888878777774322    24677777788888999999888

>PRK10929 putative mechanosensitive channel protein; Provisional

Probab=93.00  E-value=35  Score=43.59  Aligned_cols=17  Identities=18%  Similarity=0.208  Sum_probs=8.6

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 005259          388 IQALREELASVERRAEE  404 (705)
Q Consensus       388 lqSLE~eLkslq~~le~  404 (705)
                      ++.++..+..+|+.+..
T Consensus       217 ~~~l~~~~~~Lq~~in~  233 (1109)
T PRK10929        217 SQQLDAYLQALRNQLNS  233 (1109)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            44455555555555444

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=92.95  E-value=17  Score=39.93  Aligned_cols=32  Identities=16%  Similarity=0.234  Sum_probs=13.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 005259          342 NSEIETLVSSIDALKKQAALSEGNLASLQMNM  373 (705)
Q Consensus       342 ~~eie~Le~rl~~Le~el~~~K~rleele~E~  373 (705)
                      +.++..+..++..++.++...+..+..++.+.
T Consensus       150 ~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~  181 (423)
T TIGR01843       150 LAQIKQLEAELAGLQAQLQALRQQLEVISEEL  181 (423)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444444444444444444444444333

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif

Probab=92.93  E-value=23  Score=41.37  Aligned_cols=61  Identities=16%  Similarity=0.195  Sum_probs=42.8

Q ss_pred             hhHHHHHHHHHHHHHHhhhhhcccchhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259          515 SSLEAEVQKMRVEMAAMKRDAEHYSREE---HMELEKRYRELTDLLYYKQTQLETMASEKAAAE  575 (705)
Q Consensus       515 ~s~E~elqkLr~e~~~~k~q~~els~q~---~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~  575 (705)
                      ...+.+...+..++....+.+..+++.+   ..-||.||..|+|+|+..+.++..-..|+.+|.
T Consensus       451 ~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEHLasmNeqL~~Q~eeI~~LK  514 (518)
T PF10212_consen  451 ESAEKEKESLEEELKEANQNISRLQDELETTRRNYEEQLSMMSEHLASMNEQLAKQREEIQTLK  514 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3334444444444444444444444444   468999999999999999999999999999886

It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=92.89  E-value=26  Score=41.86  Aligned_cols=36  Identities=19%  Similarity=0.287  Sum_probs=14.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 005259          344 EIETLVSSIDALKKQAALSEGNLASLQMNMESIMRN  379 (705)
Q Consensus       344 eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~  379 (705)
                      ++.++..++..+.+++..++..++.++...+.+.+.
T Consensus       217 el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~  252 (650)
T TIGR03185       217 ELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKK  252 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444444444444444444444333

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=92.59  E-value=8  Score=38.55  Aligned_cols=45  Identities=24%  Similarity=0.352  Sum_probs=22.0

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 005259          280 GLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYK  324 (705)
Q Consensus       280 RLrk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ  324 (705)
                      ++...+.+++.+..+++..+..++.....+...+..++..+...+
T Consensus        78 ~~~~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~  122 (191)
T PF04156_consen   78 RLQGELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELR  122 (191)
T ss_pred             hhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            344455555555555555544444444444444444444443333

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=92.45  E-value=35  Score=42.36  Aligned_cols=15  Identities=13%  Similarity=0.235  Sum_probs=6.8

Q ss_pred             CchhhhhHHHHHHHH
Q 005259          246 PTKEQDQLDEAQGLL  260 (705)
Q Consensus       246 ~~~lqkQLee~n~~L  260 (705)
                      ...++.++..+.+.+
T Consensus       324 l~~~~~~~~~~~~~~  338 (908)
T COG0419         324 LKSLEERLEKLEEKL  338 (908)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            334444444444444

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]

Probab=92.35  E-value=15  Score=37.86  Aligned_cols=32  Identities=19%  Similarity=0.222  Sum_probs=13.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 005259          346 ETLVSSIDALKKQAALSEGNLASLQMNMESIM  377 (705)
Q Consensus       346 e~Le~rl~~Le~el~~~K~rleele~E~~rl~  377 (705)
                      ..|-.++..++.++.+...++..+...+..+-
T Consensus         7 a~lnrri~~leeele~aqErl~~a~~KL~Eae   38 (205)
T KOG1003|consen    7 AALNRRIQLLEEELDRAQERLATALQKLEEAE   38 (205)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33444444444444444444444444333333

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules

Probab=92.35  E-value=16  Score=38.02  Aligned_cols=115  Identities=13%  Similarity=0.197  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcccCChHHHHH-HHHHHHHHHHHHHHHhhhHHHHhhh
Q 005259          436 RIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQ-AIQMQAWQDEVERARQGQRDAENKL  514 (705)
Q Consensus       436 elQrkLeEe~aea~eLeqQls~LE~elkqLkQeLq~lE~e~~r~qek~~~ea~q-~~qL~~Lk~EL~~~rq~qr~l~~kl  514 (705)
                      .+++.+..-..+..-++.-+.-+....+.|+..++++...+....++-.....- -.+|.....|+..++.         
T Consensus        87 s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~~ANeei~~v~~---------  157 (207)
T PF05010_consen   87 SLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAEEKLEKANEEIAQVRS---------  157 (207)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence            333333333333333333333333344444444444444444333221111111 1234444555544433         


Q ss_pred             hhHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259          515 SSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAE  575 (705)
Q Consensus       515 ~s~E~elqkLr~e~~~~k~q~~els~q~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~  575 (705)
                       +.+.++..|+..+..               .+.++.+|.+.|.+|....+.|..=..-|.
T Consensus       158 -~~~~e~~aLqa~lkk---------------~e~~~~SLe~~LeQK~kEn~ELtkICDeLI  202 (207)
T PF05010_consen  158 -KHQAELLALQASLKK---------------EEMKVQSLEESLEQKTKENEELTKICDELI  202 (207)
T ss_pred             -HhHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             245666666666632               245788999999999888887776544443

The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].

>smart00787 Spc7 Spc7 kinetochore protein

Probab=92.10  E-value=13  Score=40.72  Aligned_cols=59  Identities=19%  Similarity=0.253  Sum_probs=27.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh----HHHHHHHHHHHHHHHHHH
Q 005259          341 KNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL----TETRMIQALREELASVER  400 (705)
Q Consensus       341 k~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~----~ekeilqSLE~eLkslq~  400 (705)
                      +...+.+++.++..+...+...+.+..++..+...+...+..    ..++ +..|...+..++.
T Consensus       223 ~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~E-i~~Lk~~~~~Le~  285 (312)
T smart00787      223 KVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKE-IEKLKEQLKLLQS  285 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHH-HHHHHHHHHHHHH
Confidence            334444555555555555555555555555554444443333    2444 4444444444443

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]

Probab=91.99  E-value=20  Score=38.40  Aligned_cols=96  Identities=20%  Similarity=0.177  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259          347 TLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELT----ETRMIQALREELASVERRAEEERAAHNATKMAAMEREVE  422 (705)
Q Consensus       347 ~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~----ekeilqSLE~eLkslq~~le~E~~aH~aTk~ea~~Re~e  422 (705)
                      +|+..+.-++.....+..+-..+..|..+++++..+.    .+. ...|+.+|..+.           +-+.+...+..+
T Consensus        49 elesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q-~s~Leddlsqt~-----------aikeql~kyiRe  116 (333)
T KOG1853|consen   49 ELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQ-ESQLEDDLSQTH-----------AIKEQLRKYIRE  116 (333)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-----------HHHHHHHHHHHH
Confidence            4444555555555555555555555556666666552    333 444554444433           224444456677


Q ss_pred             HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Q 005259          423 LEHRAAEASMA-------LARIQRIADERTAKAGELEQK  454 (705)
Q Consensus       423 LEee~~eLseA-------LaelQrkLeEe~aea~eLeqQ  454 (705)
                      ||.+|..|..+       +...+.+|++++.+...|+..
T Consensus       117 LEQaNDdLErakRati~sleDfeqrLnqAIErnAfLESE  155 (333)
T KOG1853|consen  117 LEQANDDLERAKRATIYSLEDFEQRLNQAIERNAFLESE  155 (333)
T ss_pred             HHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            77777666554       445566666666555555443

>PLN03188 kinesin-12 family protein; Provisional

Probab=91.81  E-value=48  Score=42.53  Aligned_cols=50  Identities=24%  Similarity=0.163  Sum_probs=43.5

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259          541 EEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQS  590 (705)
Q Consensus       541 q~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~e~~  590 (705)
                      +...+|=-|+++--+-+.--|.+.-.++.|..-+-.|++++..+++.|-.
T Consensus      1197 ~aagellvrl~eaeea~~~a~~r~~~~eqe~~~~~k~~~klkrkh~~e~~ 1246 (1320)
T PLN03188       1197 QAAGELLVRLKEAEEALTVAQKRAMDAEQEAAEAYKQIDKLKRKHENEIS 1246 (1320)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33578888999999999999999999999999999999999999987743

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.73  E-value=22  Score=38.34  Aligned_cols=37  Identities=14%  Similarity=0.161  Sum_probs=20.6

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhH
Q 005259          347 TLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELT  383 (705)
Q Consensus       347 ~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~  383 (705)
                      +|-.|+.++..=+.--+.-++....+...|...-..+
T Consensus       131 D~IsRvtAi~~iv~aDk~ile~qk~dk~~Le~kq~~l  167 (265)
T COG3883         131 DLISRVTAISVIVDADKKILEQQKEDKKSLEEKQAAL  167 (265)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            4445666666555555555555555555555444443

>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=91.67  E-value=29  Score=39.65  Aligned_cols=86  Identities=23%  Similarity=0.211  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhH
Q 005259          290 SENAQLEELLVAERELSR-SYEARIKQLEQELSVYKSEVTKVES---NLAEALAAKNSEIETLVSSIDALKKQAALSEGN  365 (705)
Q Consensus       290 s~~aqLEell~el~e~~~-~L~~rl~~LQaeL~~EQ~~l~q~es---~~~ealsak~~eie~Le~rl~~Le~el~~~K~r  365 (705)
                      +.+-..|+++.+..+-++ .+..++.-|+..       +..+..   .-..+-+...-+.-.|+.|...|++.++....+
T Consensus       200 sn~~~tedl~~e~mee~r~di~~kv~flerk-------v~eledd~~~~gd~~SrlkqEnlqLvhR~h~LEEq~reqElr  272 (502)
T KOG0982|consen  200 SNKLETEDLLVEGMEEERIDIERKVRFLERK-------VQELEDDQNIAGDRSSRLKQENLQLVHRYHMLEEQRREQELR  272 (502)
T ss_pred             ccccchhhhhhhhhhchhhhHHHHHHHHHHH-------HHHhhcchhccccchhHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            335567777776655544 233344444444       333332   223344556777777888888888888888888


Q ss_pred             HHHHHHHHHHHHHHhhh
Q 005259          366 LASLQMNMESIMRNREL  382 (705)
Q Consensus       366 leele~E~~rl~e~l~~  382 (705)
                      .++.-.+-.+-..++-.
T Consensus       273 aeE~l~Ee~rrhrEil~  289 (502)
T KOG0982|consen  273 AEESLSEEERRHREILI  289 (502)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            77776665554444444

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules

Probab=91.66  E-value=19  Score=37.46  Aligned_cols=73  Identities=23%  Similarity=0.137  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 005259          393 EELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQE  468 (705)
Q Consensus       393 ~eLkslq~~le~E~~aH~aTk~ea~~Re~eLEee~~eLseALaelQrkLeEe~aea~eLeqQls~LE~elkqLkQe  468 (705)
                      .-+.....++..+...|.+.+..+.   ..|+.+|.++......++..+.--.+.+.-.+-++..|+..+++-.++
T Consensus       118 k~~~ey~~~l~~~eqry~aLK~hAe---ekL~~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kE  190 (207)
T PF05010_consen  118 KCIEEYEERLKKEEQRYQALKAHAE---EKLEKANEEIAQVRSKHQAELLALQASLKKEEMKVQSLEESLEQKTKE  190 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344445555555566666666544   334566655555555444443333333333333334444443333333

The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=91.53  E-value=40  Score=41.07  Aligned_cols=78  Identities=12%  Similarity=0.256  Sum_probs=39.4

Q ss_pred             HHHHHHHHHhhhHHHHhhhhhHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259          496 WQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAE  575 (705)
Q Consensus       496 Lk~EL~~~rq~qr~l~~kl~s~E~elqkLr~e~~~~k~q~~els~q~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~  575 (705)
                      +++||.+.....+.+...|......+++.+..++.-+...    ......-+.|.+.+++-|.+--..|..+..+...+.
T Consensus       637 ~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~~~~~~~----~~s~~L~~~Q~~~I~~iL~~~~~~I~~~v~~ik~i~  712 (717)
T PF10168_consen  637 FKKELERMKDQLQDLKASIEQLKKKLDYQQRQIESQKSPK----KKSIVLSESQKRTIKEILKQQGEEIDELVKQIKNIK  712 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc----CCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444344444444444444444444433111111    011133466777888888777777777777666554


Q ss_pred             HH
Q 005259          576 FQ  577 (705)
Q Consensus       576 ~q  577 (705)
                      ..
T Consensus       713 ~~  714 (717)
T PF10168_consen  713 KI  714 (717)
T ss_pred             Hh
Confidence            43

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=91.41  E-value=29  Score=39.20  Aligned_cols=75  Identities=17%  Similarity=0.297  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHH
Q 005259          312 RIKQLEQELSVYKSEVTKVESNLAEALAA---KNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETR  386 (705)
Q Consensus       312 rl~~LQaeL~~EQ~~l~q~es~~~ealsa---k~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~eke  386 (705)
                      .+..+..+|...+.++...+....+..+-   .+.+.+.--.+....++++...+..+.+++.++.++...-.++..+
T Consensus        75 qlddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtr  152 (499)
T COG4372          75 QLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTR  152 (499)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555555555555544433322221   2223333334555556666666666666666666655544444444

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=91.18  E-value=0.92  Score=45.89  Aligned_cols=47  Identities=23%  Similarity=0.347  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259          544 MELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQS  590 (705)
Q Consensus       544 ~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~e~~  590 (705)
                      ..|+.++..|.+.|.+|+..++.|..|..+|.+++-.++.+++.-..
T Consensus       126 ~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~  172 (194)
T PF08614_consen  126 AQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEE  172 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66788999999999999999999999999999999998877776543

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=91.09  E-value=46  Score=40.91  Aligned_cols=120  Identities=25%  Similarity=0.273  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 005259          345 IETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVE---RRAEEERAAHNATKMAAMEREV  421 (705)
Q Consensus       345 ie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq---~~le~E~~aH~aTk~ea~~Re~  421 (705)
                      ...|..++..++.+-..+...+.+++.+++.++-.+...+.. +.+|+.+|.+++   ..++.++..+.........|..
T Consensus       591 ~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~-L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~  669 (769)
T PF05911_consen  591 KKELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQK-LEELQSELESAKESNSLAETQLKAMKESYESLETRLK  669 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            334444444444444444444444444444444444444444 444444433332   2233334444444444555666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 005259          422 ELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATL  465 (705)
Q Consensus       422 eLEee~~eLseALaelQrkLeEe~aea~eLeqQls~LE~elkqL  465 (705)
                      .++.+...+..-+..++..++.++.-..++..+|..|+.++...
T Consensus       670 ~~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r~  713 (769)
T PF05911_consen  670 DLEAEAEELQSKISSLEEELEKERALSEELEAKCRELEEELERM  713 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhh
Confidence            66666666666677777777777766666666666666555444

The function of this family is unknown.

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=90.78  E-value=19  Score=35.89  Aligned_cols=56  Identities=16%  Similarity=0.303  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 005259          419 REVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEA  474 (705)
Q Consensus       419 Re~eLEee~~eLseALaelQrkLeEe~aea~eLeqQls~LE~elkqLkQeLq~lE~  474 (705)
                      +...+......+.+-+..+++.+.+...++..++..+..+..++..+.+.+++.+.
T Consensus       131 ~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  186 (191)
T PF04156_consen  131 RLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEKIQELQE  186 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333433444444444555555566666666666665555555555544443

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=90.57  E-value=30  Score=37.96  Aligned_cols=26  Identities=23%  Similarity=0.473  Sum_probs=18.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259          307 RSYEARIKQLEQELSVYKSEVTKVES  332 (705)
Q Consensus       307 ~~L~~rl~~LQaeL~~EQ~~l~q~es  332 (705)
                      ..|+.++..|+.+....+.+..++..
T Consensus       163 e~Lq~Klk~LEeEN~~LR~Ea~~L~~  188 (306)
T PF04849_consen  163 EALQEKLKSLEEENEQLRSEASQLKT  188 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            55666777777777777777766664

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]

Probab=90.14  E-value=42  Score=39.16  Aligned_cols=90  Identities=12%  Similarity=0.154  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHH
Q 005259          309 YEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMI  388 (705)
Q Consensus       309 L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeil  388 (705)
                      |+.++..++.+..+++...-....+-..--...+....++..+++-++-.+......++..-.++-+.+++.+.+..+ +
T Consensus       164 L~ekLk~~~een~~lr~k~~llk~Et~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsq-l  242 (596)
T KOG4360|consen  164 LQEKLKPLEEENTQLRSKAMLLKTETLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQ-L  242 (596)
T ss_pred             HHhhcCChHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence            333444444444444444443332111111224444557777788888888888888888888888888888887777 5


Q ss_pred             HHHHHHHHHHH
Q 005259          389 QALREELASVE  399 (705)
Q Consensus       389 qSLE~eLkslq  399 (705)
                      ..+.++++-+.
T Consensus       243 ~d~qkk~k~~~  253 (596)
T KOG4360|consen  243 VDLQKKIKYLR  253 (596)
T ss_pred             HhhHHHHHHHH
Confidence            55555554443

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=89.96  E-value=18  Score=34.46  Aligned_cols=45  Identities=16%  Similarity=0.235  Sum_probs=22.8

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 005259          359 AALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEE  404 (705)
Q Consensus       359 l~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le~  404 (705)
                      +..++..+.+++..-+.+.+-+..+..+ ...|+.++..++.-+..
T Consensus        70 ~~~L~~el~~l~~ry~t~LellGEK~E~-veEL~~Dv~DlK~myr~  114 (120)
T PF12325_consen   70 VEELEQELEELQQRYQTLLELLGEKSEE-VEELRADVQDLKEMYRE  114 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcchHHH-HHHHHHHHHHHHHHHHH
Confidence            3333333344444444444444445555 66666666666655543

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=89.85  E-value=12  Score=35.67  Aligned_cols=87  Identities=18%  Similarity=0.231  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHH
Q 005259          288 YKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLA  367 (705)
Q Consensus       288 lks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le~rl~~Le~el~~~K~rle  367 (705)
                      +.+.++++|-.+..+++.+..|......+..++.+.-......+. ..........++.+|+.+..++=+-+.+-....+
T Consensus        21 L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~-~~~~~~~L~~el~~l~~ry~t~LellGEK~E~ve   99 (120)
T PF12325_consen   21 LQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRA-LKKEVEELEQELEELQQRYQTLLELLGEKSEEVE   99 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence            344444444444444444444444444444444333332222222 2223333334444444444444333333344444


Q ss_pred             HHHHHHHH
Q 005259          368 SLQMNMES  375 (705)
Q Consensus       368 ele~E~~r  375 (705)
                      +++.+..-
T Consensus       100 EL~~Dv~D  107 (120)
T PF12325_consen  100 ELRADVQD  107 (120)
T ss_pred             HHHHHHHH
Confidence            44444333

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]

Probab=89.82  E-value=28  Score=41.99  Aligned_cols=37  Identities=11%  Similarity=-0.004  Sum_probs=23.1

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHH-HHhhhhhhhhhhhH
Q 005259          655 RYPIARIILLFYLVFVHLFLMYL-LHRLQEQADNFAAR  691 (705)
Q Consensus       655 RyP~ARl~vlvYmvlLHLWVm~V-L~~~~~~~~~~~~~  691 (705)
                      +-|++|+-.-+-+.-|-+||=+. ++.-.+.+++.+++
T Consensus       582 ~~p~~~w~~p~vvawlel~vgmpa~yva~c~~nVksg~  619 (916)
T KOG0249|consen  582 GLPFAQWDGPTVVAWLELWVGMPAWYVAACRANVKSGA  619 (916)
T ss_pred             cCchhhcCCCeeeehhhHHhccHHHHHHHHHHHhhhhH
Confidence            46777777777777888888655 44444444544433

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=89.69  E-value=13  Score=40.01  Aligned_cols=104  Identities=14%  Similarity=0.250  Sum_probs=55.7

Q ss_pred             hHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259          364 GNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADE  443 (705)
Q Consensus       364 ~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le~E~~aH~aTk~ea~~Re~eLEee~~eLseALaelQrkLeE  443 (705)
                      .+|.+++.++++|+.+.....        +.|.+++.++......+..-+.    ....|..++.-|.+....+++.-+-
T Consensus        18 qKIqelE~QldkLkKE~qQrQ--------fQleSlEAaLqKQKqK~e~ek~----e~s~LkREnq~l~e~c~~lek~rqK   85 (307)
T PF10481_consen   18 QKIQELEQQLDKLKKERQQRQ--------FQLESLEAALQKQKQKVEEEKN----EYSALKRENQSLMESCENLEKTRQK   85 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH--------HhHHHHHHHHHHHHHHHHHHhh----hhhhhhhhhhhHHHHHHHHHHHHHH
Confidence            455556666666554444333        4455555555544443333232    4555666777777766666665444


Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHc
Q 005259          444 RTAKAGELEQKVAMLEVECATLQQELQDMEARLKRG  479 (705)
Q Consensus       444 e~aea~eLeqQls~LE~elkqLkQeLq~lE~e~~r~  479 (705)
                      -...+..-+.++.-||-.+..++..++.++.++.+.
T Consensus        86 lshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~  121 (307)
T PF10481_consen   86 LSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRC  121 (307)
T ss_pred             hhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444455555566666666655555555555444433

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=89.62  E-value=55  Score=39.50  Aligned_cols=58  Identities=19%  Similarity=0.175  Sum_probs=39.2

Q ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259          275 ARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVES  332 (705)
Q Consensus       275 a~~~~RLrk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ~~l~q~es  332 (705)
                      .+...++..--.++.+.+...|..+..++..+..=.+.+..|.-.|...|.-+.+++.
T Consensus       218 KE~~~k~~~leeey~~E~n~kEkqvs~L~~q~~eKen~~kdl~~~l~es~~~~~qLeE  275 (786)
T PF05483_consen  218 KEDYEKFEDLEEEYKKEVNDKEKQVSLLQTQLKEKENKIKDLLLLLQESQDKCNQLEE  275 (786)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444445566677777777777777777766666777777777777777777774

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]

Probab=89.59  E-value=15  Score=42.61  Aligned_cols=136  Identities=17%  Similarity=0.175  Sum_probs=91.7

Q ss_pred             HhhhhcCCCCchhhh---hHHHHHHHHHhhhhhcchHHHHHH-HHHhhhhHHHHHHHHHH---HHHHHHHHHHHHHhHHH
Q 005259          237 QQALKADDPPTKEQD---QLDEAQGLLKTTISTGQSKEARLA-RVCAGLSSRLQEYKSEN---AQLEELLVAERELSRSY  309 (705)
Q Consensus       237 ~~~~~~~ek~~~lqk---QLee~n~~LrsE~eal~~ke~qLa-~~~~RLrk~~~elks~~---aqLEell~el~e~~~~L  309 (705)
                      .++.-.-+|...+.+   ||+---+.||+|.=+-..|+.++- ...-+|+.......+-.   +++=..+..+++-...|
T Consensus       159 ~~~EaL~ekLk~~~een~~lr~k~~llk~Et~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skL  238 (596)
T KOG4360|consen  159 ELLEALQEKLKPLEEENTQLRSKAMLLKTETLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKL  238 (596)
T ss_pred             HHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445555555555544   556666778888766778888887 55556777666655543   33334445677777778


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 005259          310 EARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESI  376 (705)
Q Consensus       310 ~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl  376 (705)
                      .+.|+.++......    ....+++.+.|-+..+-...|..++..++.+..+....+.++++++..+
T Consensus       239 lsql~d~qkk~k~~----~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~l  301 (596)
T KOG4360|consen  239 LSQLVDLQKKIKYL----RHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCL  301 (596)
T ss_pred             HHHHHhhHHHHHHH----HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            88888888776653    3334456666666777777788888888888888888888888886654

>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional

Probab=89.44  E-value=46  Score=38.31  Aligned_cols=80  Identities=13%  Similarity=0.135  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHH
Q 005259          517 LEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQL---------ETMASEKAAAEFQLEKEMNRLQE  587 (705)
Q Consensus       517 ~E~elqkLr~e~~~~k~q~~els~q~~~elE~rl~eLtE~L~eKQ~ql---------E~L~~Er~sL~~qLE~~~~~~~~  587 (705)
                      ++.++..++.++..+.+.+.+ .+..-..++.||..|..++......+         -...+|-..|..+.+-+...|..
T Consensus       291 Le~qLa~~~aeL~~L~~~~~p-~sPqV~~l~~rI~aLe~QIa~er~kl~~~~g~~~la~~laeYe~L~le~efAe~~y~s  369 (434)
T PRK15178        291 FETQLAEAKAEYAQLMVNGLD-QNPLIPRLSAKIKVLEKQIGEQRNRLSNKLGSQGSSESLSLFEDLRLQSEIAKARWES  369 (434)
T ss_pred             HHHHHHHHHHHHHHHHhhcCC-CCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444332221 12223455556666655555444333         23556667777777777777777


Q ss_pred             HHHHHhhhhc
Q 005259          588 VQSEAERSRV  597 (705)
Q Consensus       588 e~~~~~~sr~  597 (705)
                      ..+.++.+|+
T Consensus       370 AlaaLE~AR~  379 (434)
T PRK15178        370 ALQTLQQGKL  379 (434)
T ss_pred             HHHHHHHHHH
Confidence            7766666654

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=89.17  E-value=6.9  Score=46.18  Aligned_cols=88  Identities=17%  Similarity=0.265  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 005259          289 KSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLAS  368 (705)
Q Consensus       289 ks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le~rl~~Le~el~~~K~rlee  368 (705)
                      .+++..++..+..+.+-.+.|+..+.+++.+.....+.+.++..++. .-..++-++..+..++..|+.++.+.+.+.+.
T Consensus       421 ~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~-~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~  499 (652)
T COG2433         421 EKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR-DKVRKDREIRARDRRIERLEKELEEKKKRVEE  499 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444443344444444444444444444444444444443222 12236667778888888888888888888888


Q ss_pred             HHHHHHHHH
Q 005259          369 LQMNMESIM  377 (705)
Q Consensus       369 le~E~~rl~  377 (705)
                      |+..+.++.
T Consensus       500 L~~~l~~l~  508 (652)
T COG2433         500 LERKLAELR  508 (652)
T ss_pred             HHHHHHHHH
Confidence            877776655

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=88.96  E-value=14  Score=35.67  Aligned_cols=55  Identities=25%  Similarity=0.372  Sum_probs=34.0

Q ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259          278 CAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVES  332 (705)
Q Consensus       278 ~~RLrk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ~~l~q~es  332 (705)
                      ..+|......++.+++.+|..+.......+.+...+..++..+..+++++..++.
T Consensus        68 ~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~  122 (151)
T PF11559_consen   68 IERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKN  122 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555555555555555555555556666666777777777777776666665

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=88.70  E-value=20  Score=39.29  Aligned_cols=28  Identities=25%  Similarity=0.254  Sum_probs=13.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259          560 KQTQLETMASEKAAAEFQLEKEMNRLQE  587 (705)
Q Consensus       560 KQ~qlE~L~~Er~sL~~qLE~~~~~~~~  587 (705)
                      .+-++-.+..++.++..|++.+...++.
T Consensus       104 ~~~~l~~~~~e~~sl~~q~~~~~~~L~~  131 (314)
T PF04111_consen  104 LQLELIEFQEERDSLKNQYEYASNQLDR  131 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444455555555555555544443

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=88.68  E-value=43  Score=37.03  Aligned_cols=38  Identities=21%  Similarity=0.303  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 005259          441 ADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKR  478 (705)
Q Consensus       441 LeEe~aea~eLeqQls~LE~elkqLkQeLq~lE~e~~r  478 (705)
                      ++.=..+-.-|.+++..++.+..-+++.+..|..-+++
T Consensus       191 IDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~~le~  228 (319)
T PF09789_consen  191 IDALIMENRYLKERLKQLQEEKELLKQTINKYKSALER  228 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44444556778888889999999999999999988884

>PRK10884 SH3 domain-containing protein; Provisional

Probab=88.43  E-value=7.4  Score=40.26  Aligned_cols=43  Identities=14%  Similarity=0.247  Sum_probs=20.2

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 005259          357 KQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVER  400 (705)
Q Consensus       357 ~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~  400 (705)
                      +++...+..+.++..++++|.+.+..+.++ ...++.++..++.
T Consensus       125 ~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~-~~~l~~~~~~~~~  167 (206)
T PRK10884        125 QKVAQSDSVINGLKEENQKLKNQLIVAQKK-VDAANLQLDDKQR  167 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence            333334444444555555555555554444 4444444444443

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=88.34  E-value=15  Score=35.62  Aligned_cols=80  Identities=29%  Similarity=0.343  Sum_probs=54.2

Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 005259          273 RLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSI  352 (705)
Q Consensus       273 qLa~~~~RLrk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le~rl  352 (705)
                      +|.-...||++.+..+...+..++...+.+....+.+...+.....++.+.+..+.+....+.-.+-+++-++.-|..++
T Consensus        70 ~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e~rkke~E~~kLk~rL  149 (151)
T PF11559_consen   70 RLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEHELRKKEREIEKLKERL  149 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45556667777777777777777777777777777777777777777777777777777666655555555555555443

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>KOG1937 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.02  E-value=57  Score=37.63  Aligned_cols=70  Identities=16%  Similarity=0.237  Sum_probs=51.3

Q ss_pred             HhhhhhHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259          511 ENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQ  586 (705)
Q Consensus       511 ~~kl~s~E~elqkLr~e~~~~k~q~~els~q~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~  586 (705)
                      ...+.+.+....+|+++.+..-.      +..-..|..||++++-.+---.+.|-.+..|...|+.|+.....++.
T Consensus       358 ~eei~~~eel~~~Lrsele~lp~------dv~rk~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~se~L~  427 (521)
T KOG1937|consen  358 DEEIESNEELAEKLRSELEKLPD------DVQRKVYTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSESEALN  427 (521)
T ss_pred             HHHHHhhHHHHHHHHHHHhcCCc------hhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34455567777788888865332      23357899999999887655558899999999999998888665443

>PF15397 DUF4618: Domain of unknown function (DUF4618)

Probab=88.01  E-value=42  Score=36.09  Aligned_cols=54  Identities=13%  Similarity=0.264  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh----HHHHHHHHHHHHHHHHHHHHHHH
Q 005259          351 SIDALKKQAALSEGNLASLQMNMESIMRNREL----TETRMIQALREELASVERRAEEE  405 (705)
Q Consensus       351 rl~~Le~el~~~K~rleele~E~~rl~e~l~~----~ekeilqSLE~eLkslq~~le~E  405 (705)
                      .+..|++++..++.++.+++.+..-|..=..+    +.=+ +.+|...|..++..-..|
T Consensus        82 ~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vq-Ia~L~rqlq~lk~~qqdE  139 (258)
T PF15397_consen   82 KLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQ-IANLVRQLQQLKDSQQDE  139 (258)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH-HHHHHHHHHHHHHHHHHH
Confidence            44445555555555555555554443332222    1222 444444444444444443

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=87.87  E-value=1e+02  Score=40.37  Aligned_cols=13  Identities=31%  Similarity=0.233  Sum_probs=6.7

Q ss_pred             HhHhhhhhhhhhH
Q 005259          639 AKLLDSGAVRATR  651 (705)
Q Consensus       639 a~~lDs~slr~g~  651 (705)
                      +.+||++=+--|.
T Consensus       629 ~GLLDA~v~p~~~  641 (1353)
T TIGR02680       629 AGLLDAWVTADGT  641 (1353)
T ss_pred             CCCcceeeCCCcc
Confidence            4666766443333

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=87.73  E-value=15  Score=43.55  Aligned_cols=94  Identities=21%  Similarity=0.314  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259          350 SSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAE  429 (705)
Q Consensus       350 ~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le~E~~aH~aTk~ea~~Re~eLEee~~e  429 (705)
                      .++.....++..+...+++++.++..|+..+..+.++ +..|+.+|..+......+...-         |      +...
T Consensus       415 ~ei~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~e-ie~L~~~l~~~~r~~~~~~~~~---------r------ei~~  478 (652)
T COG2433         415 REITVYEKRIKKLEETVERLEEENSELKRELEELKRE-IEKLESELERFRREVRDKVRKD---------R------EIRA  478 (652)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhh---------H------HHHH
Confidence            3444555555555666666666666666666665555 6667777777776665432211         1      1112


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 005259          430 ASMALARIQRIADERTAKAGELEQKVAMLE  459 (705)
Q Consensus       430 LseALaelQrkLeEe~aea~eLeqQls~LE  459 (705)
                      +..-+..++++|.++..++++|+.++..+.
T Consensus       479 ~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~  508 (652)
T COG2433         479 RDRRIERLEKELEEKKKRVEELERKLAELR  508 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            234456677888888888888887766654

>PF15397 DUF4618: Domain of unknown function (DUF4618)

Probab=87.56  E-value=45  Score=35.89  Aligned_cols=106  Identities=14%  Similarity=0.132  Sum_probs=53.2

Q ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHH-------HHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 005259          277 VCAGLSSRLQEYKSENAQLEELLVA-------ERELSRSYEARIKQ-LEQELSVYKSEVTKVESNLAEALAAKNSEIETL  348 (705)
Q Consensus       277 ~~~RLrk~~~elks~~aqLEell~e-------l~e~~~~L~~rl~~-LQaeL~~EQ~~l~q~es~~~ealsak~~eie~L  348 (705)
                      -+.-|.+...++.+.+...|+.-+.       +.+++....+-+.. =...|...+.++...+..+...++....+...|
T Consensus        14 h~~~L~~~N~~L~~~IqdtE~st~~~Vr~lLqqy~~~~~~i~~le~~~~~~l~~ak~eLqe~eek~e~~l~~Lq~ql~~l   93 (258)
T PF15397_consen   14 HEDFLTKLNKELIKEIQDTEDSTALKVRKLLQQYDIYRTAIDILEYSNHKQLQQAKAELQEWEEKEESKLSKLQQQLEQL   93 (258)
T ss_pred             HHHHHHHhhHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            3455666666666666666664431       22222222221100 012233344444555555555555555556666


Q ss_pred             HHHHHHHHHHHHHHH-----------hHHHHHHHHHHHHHHHhhh
Q 005259          349 VSSIDALKKQAALSE-----------GNLASLQMNMESIMRNREL  382 (705)
Q Consensus       349 e~rl~~Le~el~~~K-----------~rleele~E~~rl~e~l~~  382 (705)
                      ..++...+.++.-+.           -++..+..+++++.++..+
T Consensus        94 ~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~qqd  138 (258)
T PF15397_consen   94 DAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKDSQQD  138 (258)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666655555443           2566666666666665555

>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function

Probab=87.56  E-value=23  Score=39.32  Aligned_cols=109  Identities=22%  Similarity=0.227  Sum_probs=44.5

Q ss_pred             HHhhhhhcchHHHHHHHHHhhhhHHHHHH---HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259          260 LKTTISTGQSKEARLARVCAGLSSRLQEY---KSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAE  336 (705)
Q Consensus       260 LrsE~eal~~ke~qLa~~~~RLrk~~~el---ks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ~~l~q~es~~~e  336 (705)
                      |++.+--+-.++--|...|.-+++++.++   +..+.+|=..|-..++..-...++...||.-+...+++-.+.+-    
T Consensus        73 lq~kirk~~e~~eglr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lql----  148 (401)
T PF06785_consen   73 LQTKIRKITEKDEGLRKIRESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQL----  148 (401)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH----
Confidence            33333333334445555555555554432   33333333322233333222333444444444333332222221    


Q ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 005259          337 ALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMN  372 (705)
Q Consensus       337 alsak~~eie~Le~rl~~Le~el~~~K~rleele~E  372 (705)
                      +|.+..-+..+.+.+-+.|++|+.+.-.....+-++
T Consensus       149 qL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~e  184 (401)
T PF06785_consen  149 QLDALQQECGEKEEESQTLNRELAEALAYQQELNDE  184 (401)
T ss_pred             hHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222233333344555555555555555554444444

>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin

Probab=87.47  E-value=37  Score=35.23  Aligned_cols=81  Identities=21%  Similarity=0.255  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHHHHhHHHHHH--------HHHHHHHHHhh
Q 005259          311 ARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSI-DALKKQAALSEGNLASLQ--------MNMESIMRNRE  381 (705)
Q Consensus       311 ~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le~rl-~~Le~el~~~K~rleele--------~E~~rl~e~l~  381 (705)
                      .++..||.+|...|.++.+.+.               |+-++ ..|++++..++.+-....        .....|++.+-
T Consensus         3 ekv~~LQ~AL~~LQaa~ekRE~---------------lE~rLR~~lE~EL~~lr~qq~~~~~~~~~~~~~~~~~L~~~Lr   67 (205)
T PF12240_consen    3 EKVERLQQALAQLQAACEKREQ---------------LERRLRTRLERELESLRAQQRQGNSSGSSSPSNNASNLKELLR   67 (205)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHH
Confidence            4677888888888877776664               22222 345555555543322111        34667888888


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259          382 LTETRMIQALREELASVERRAEEERA  407 (705)
Q Consensus       382 ~~ekeilqSLE~eLkslq~~le~E~~  407 (705)
                      .++.+ +=+||.++--.++++-.|..
T Consensus        68 EkEEr-ILaLEad~~kWEqkYLEEs~   92 (205)
T PF12240_consen   68 EKEER-ILALEADMTKWEQKYLEESA   92 (205)
T ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence            88888 77899999999999855533

Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=87.28  E-value=31  Score=33.81  Aligned_cols=40  Identities=20%  Similarity=0.313  Sum_probs=18.2

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHH
Q 005259          347 TLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETR  386 (705)
Q Consensus       347 ~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~eke  386 (705)
                      .|+.++.+|++++.......+.+..++...+..+..+..+
T Consensus        21 sle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~e   60 (140)
T PF10473_consen   21 SLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEE   60 (140)
T ss_pred             hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444444444444444444444443333

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>TIGR03017 EpsF chain length determinant protein EpsF

Probab=87.26  E-value=56  Score=36.70  Aligned_cols=52  Identities=15%  Similarity=0.215  Sum_probs=30.3

Q ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHH---------HHHHHHHHHHHHHHHHHHH
Q 005259          276 RVCAGLSSRLQEYKSENAQLEELLVAERELSRS---------YEARIKQLEQELSVYKSEV  327 (705)
Q Consensus       276 ~~~~RLrk~~~elks~~aqLEell~el~e~~~~---------L~~rl~~LQaeL~~EQ~~l  327 (705)
                      ....-|.+++.+++.+....|..+..-+.....         ...++..|..++...+..+
T Consensus       171 ~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i~~~~~~~~~~~~~l~~l~~~l~~~~~~~  231 (444)
T TIGR03017       171 KAALWFVQQIAALREDLARAQSKLSAYQQEKGIVSSDERLDVERARLNELSAQLVAAQAQV  231 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCcccchHHHHHHHHHHHHHHHHHHH
Confidence            356677777777777777777766665554322         2234555555555444433

Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.

>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif

Probab=86.91  E-value=9.3  Score=35.56  Aligned_cols=67  Identities=24%  Similarity=0.368  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005259          519 AEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQSEAE  593 (705)
Q Consensus       519 ~elqkLr~e~~~~k~q~~els~q~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~e~~~~~  593 (705)
                      .+..+||++...++.-.        .+...+...|++.|-.|...|-.+..|..+|.|+-+.+..|...-+-+++
T Consensus         5 ~eYsKLraQ~~vLKKaV--------ieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~   71 (102)
T PF10205_consen    5 QEYSKLRAQNQVLKKAV--------IEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELE   71 (102)
T ss_pred             HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566666665555322        56667789999999999999999999999999999999998888776665

This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=86.81  E-value=46  Score=35.26  Aligned_cols=78  Identities=19%  Similarity=0.294  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHH
Q 005259          309 YEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMI  388 (705)
Q Consensus       309 L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeil  388 (705)
                      |+.++.+++.+....+.++...+..           +..|+..+..++.+...+..+..+++.++.+|.......+.+ .
T Consensus        10 le~rL~q~eee~~~a~~~L~e~e~~-----------a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eE-k   77 (246)
T PF00769_consen   10 LEERLRQMEEEMRRAQEALEESEET-----------AEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEE-K   77 (246)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence            3344444444544444444443332           236666777777777777777777777777766666665444 3


Q ss_pred             HHHHHHHHHH
Q 005259          389 QALREELASV  398 (705)
Q Consensus       389 qSLE~eLksl  398 (705)
                      ..|+.++..+
T Consensus        78 ~~Le~e~~e~   87 (246)
T PF00769_consen   78 EQLEQELREA   87 (246)
T ss_dssp             ---HHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            3344443333

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>TIGR03017 EpsF chain length determinant protein EpsF

Probab=86.36  E-value=62  Score=36.33  Aligned_cols=16  Identities=19%  Similarity=0.360  Sum_probs=9.9

Q ss_pred             hhhhhhhhcccccccc
Q 005259           91 TLAVEKETITTGKTQK  106 (705)
Q Consensus        91 ~~~~~~~~~~~~~~~~  106 (705)
                      .+.++.+.|.|..++.
T Consensus        68 ~i~tq~~il~S~~v~~   83 (444)
T TIGR03017        68 YMATQVDIINSDRVAK   83 (444)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3455666677776664

Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=86.10  E-value=47  Score=35.20  Aligned_cols=36  Identities=28%  Similarity=0.312  Sum_probs=15.8

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 005259          441 ADERTAKAGELEQKVAMLEVECATLQQELQDMEARL  476 (705)
Q Consensus       441 LeEe~aea~eLeqQls~LE~elkqLkQeLq~lE~e~  476 (705)
                      +.+....+..|.......+.+...|+.++.......
T Consensus        84 ~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~  119 (246)
T PF00769_consen   84 LREAEAEIARLEEESERKEEEAEELQEELEEAREDE  119 (246)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333344444444444444455555544444333

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function

Probab=86.10  E-value=44  Score=34.31  Aligned_cols=113  Identities=16%  Similarity=0.252  Sum_probs=68.2

Q ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259          335 AEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKM  414 (705)
Q Consensus       335 ~ealsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le~E~~aH~aTk~  414 (705)
                      ...|..|.-.++.|+.++..++.-+......|...+........-...-... +..|..-|+.++..+..-...      
T Consensus        59 eAaL~GKq~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q-~~~L~~~l~~a~~nl~~a~~~------  131 (188)
T PF05335_consen   59 EAALAGKQQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQ-LETLKAALKAAQANLANAEQV------  131 (188)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH------
Confidence            3467777778888888888888888888888888887777777666665555 555555566555554331111      


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 005259          415 AAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQ  466 (705)
Q Consensus       415 ea~~Re~eLEee~~eLseALaelQrkLeEe~aea~eLeqQls~LE~elkqLk  466 (705)
                                  .......|.+-...|+..+.+++.|.+++.....||+..+
T Consensus       132 ------------a~~AQ~el~eK~qLLeaAk~Rve~L~~QL~~Ar~D~~~tk  171 (188)
T PF05335_consen  132 ------------AEGAQQELAEKTQLLEAAKRRVEELQRQLQAARADYEKTK  171 (188)
T ss_pred             ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                        1111222333444555566666666666555555554443

>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=86.09  E-value=93  Score=38.08  Aligned_cols=136  Identities=18%  Similarity=0.240  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcccCChHHHHHHHH---HHH----------HHHH
Q 005259          433 ALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQ---MQA----------WQDE  499 (705)
Q Consensus       433 ALaelQrkLeEe~aea~eLeqQls~LE~elkqLkQeLq~lE~e~~r~qek~~~ea~q~~q---L~~----------Lk~E  499 (705)
                      .+...+..++.+..++..|+.++..--.++-.++..+...+....++..--.+.....+|   +..          ..-+
T Consensus       692 ~~~~~~~~l~aaQT~~~vler~~~~~~~e~~~~k~~lkrA~~~~~k~~si~~~~~t~~~q~~~~a~f~q~a~~~h~~~vd  771 (1104)
T COG4913         692 DIAIAKAALDAAQTRQKVLERQYQQEVTECAGLKKDLKRAAMLSRKVHSIAKQGMTGALQALGAAHFPQVAPEQHDDIVD  771 (1104)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhhhhhChHhhhhhhh
Confidence            344445555555555555555555555555555555544444444443211111111011   000          0011


Q ss_pred             HHHHHhhhHHHHhhhhhHHHHHHHHHHHHHHhhhhh--------cccchhh--hHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 005259          500 VERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDA--------EHYSREE--HMELEKRYRELTD-LLYYKQTQLETMA  568 (705)
Q Consensus       500 L~~~rq~qr~l~~kl~s~E~elqkLr~e~~~~k~q~--------~els~q~--~~elE~rl~eLtE-~L~eKQ~qlE~L~  568 (705)
                      ..+ .+..+.|..+|..-+..+.+|+.++-..-.++        .++.+.+  --+|=.++++|++ .|-++.+.-..|.
T Consensus       772 ~~~-~~~r~~LqkrIDa~na~Lrrl~~~Iig~m~~~k~~~~a~~~e~~ael~~ipey~~rL~~L~~D~Lpef~arF~~ll  850 (1104)
T COG4913         772 IER-IEHRRQLQKRIDAVNARLRRLREEIIGRMSDAKKEDTAALSEVGAELDDIPEYLARLQTLTEDALPEFLARFQELL  850 (1104)
T ss_pred             HHH-HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhcchhhhhhhccCHhHHHHHHHHHHhhhhhhHHHHHHHHHHHh
Confidence            111 02233455667777777777777762211111        1111111  4577888888875 5677776666655


Q ss_pred             H
Q 005259          569 S  569 (705)
Q Consensus       569 ~  569 (705)
                      .
T Consensus       851 N  851 (1104)
T COG4913         851 N  851 (1104)
T ss_pred             h
Confidence            4

>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]

Probab=86.06  E-value=91  Score=37.98  Aligned_cols=43  Identities=9%  Similarity=0.159  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHH
Q 005259          343 SEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETR  386 (705)
Q Consensus       343 ~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~eke  386 (705)
                      ..++.|+ +...|.+++...|.+++.+.-+.+++....+.+-.+
T Consensus       210 ermaAle-~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e  252 (916)
T KOG0249|consen  210 ERMAALE-DKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGE  252 (916)
T ss_pred             HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            3344444 566777778888888888888877777766665444

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=86.02  E-value=32  Score=38.57  Aligned_cols=37  Identities=14%  Similarity=0.267  Sum_probs=15.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 005259          286 QEYKSENAQLEELLVAERELSRSYEARIKQLEQELSV  322 (705)
Q Consensus       286 ~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~  322 (705)
                      +.++....+.-.+..............+..|+.++..
T Consensus       216 kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~  252 (359)
T PF10498_consen  216 KDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISK  252 (359)
T ss_pred             chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            4555555444443333333333333334444444333

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=84.99  E-value=61  Score=35.01  Aligned_cols=40  Identities=23%  Similarity=0.092  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259          545 ELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNR  584 (705)
Q Consensus       545 elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~  584 (705)
                      .|.++..++..-+..-......+..|+.+|..|.......
T Consensus       187 ~L~~qk~e~~~l~~~~aa~~a~~~~e~a~l~~qka~a~a~  226 (265)
T COG3883         187 SLNSQKAEKNALIAALAAKEASALGEKAALEEQKALAEAA  226 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            3444444444444444466666777888887666555543

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=84.67  E-value=36  Score=32.04  Aligned_cols=17  Identities=24%  Similarity=0.468  Sum_probs=7.5

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 005259          388 IQALREELASVERRAEE  404 (705)
Q Consensus       388 lqSLE~eLkslq~~le~  404 (705)
                      +..|+..+..+...++.
T Consensus        60 ~~eLqaki~ea~~~le~   76 (107)
T PF09304_consen   60 IAELQAKIDEARRNLED   76 (107)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33334444444444444

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]

Probab=84.41  E-value=58  Score=34.27  Aligned_cols=53  Identities=19%  Similarity=0.219  Sum_probs=27.9

Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHH
Q 005259          334 LAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETR  386 (705)
Q Consensus       334 ~~ealsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~eke  386 (705)
                      +...+.+.++=...|.-.|..++.++...+..+..+-....++..++.....+
T Consensus        15 ~~~~~dk~EDp~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~   67 (225)
T COG1842          15 INELLDKAEDPEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQAR   67 (225)
T ss_pred             HHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333344444444555555555666666666666666555555555554333

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=84.37  E-value=69  Score=35.11  Aligned_cols=45  Identities=20%  Similarity=0.214  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259          544 MELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEV  588 (705)
Q Consensus       544 ~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~e  588 (705)
                      ..+-..+.++.+.++..|..+..+.....+|....-....+...+
T Consensus       217 ve~~~~~~e~~ee~~~~~~elre~~k~ik~l~~~~~~~~~~~~~e  261 (294)
T COG1340         217 VELSKKIDELHEEFRNLQNELRELEKKIKALRAKEKAAKRREKRE  261 (294)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            566677788888888888888888887777777666655444433

>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family

Probab=84.05  E-value=72  Score=35.09  Aligned_cols=33  Identities=15%  Similarity=0.239  Sum_probs=21.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259          558 YYKQTQLETMASEKAAAEFQLEKEMNRLQEVQS  590 (705)
Q Consensus       558 ~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~e~~  590 (705)
                      -.+..+++.|..|....+..++.+..++++...
T Consensus       274 ~~~~~~~~~L~re~~~a~~~y~~~l~r~~~a~~  306 (362)
T TIGR01010       274 NEQTADYQRLVLQNELAQQQLKAALTSLQQTRV  306 (362)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344556667777777777777777777666554

This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=84.00  E-value=48  Score=40.47  Aligned_cols=12  Identities=25%  Similarity=0.102  Sum_probs=8.2

Q ss_pred             CCCCCcccCCCC
Q 005259          150 ATPNGEILNEND  161 (705)
Q Consensus       150 ~~~~~~~~~~~~  161 (705)
                      .|++|+++.-..
T Consensus       459 lts~~e~v~l~L  470 (717)
T PF10168_consen  459 LTSSGECVVLPL  470 (717)
T ss_pred             EccCCcEEEEEc
Confidence            677777766554

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]

Probab=83.93  E-value=67  Score=34.59  Aligned_cols=118  Identities=19%  Similarity=0.175  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHH----HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259          347 TLVSSIDALKKQAALSEGNLASLQMN----MESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVE  422 (705)
Q Consensus       347 ~Le~rl~~Le~el~~~K~rleele~E----~~rl~e~l~~~ekeilqSLE~eLkslq~~le~E~~aH~aTk~ea~~Re~e  422 (705)
                      +|+.+.+.|.-++...|.+.+.-..+    ...|-+.++++ ..|+..+.+-+..|+++-.-=..+-++|-.-+.+=+..
T Consensus        63 dl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt-~aikeql~kyiReLEQaNDdLErakRati~sleDfeqr  141 (333)
T KOG1853|consen   63 DLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQT-HAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQR  141 (333)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHH
Confidence            44555555555555555444433332    22333333332 23466666666666665443233334443322222222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 005259          423 LEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDME  473 (705)
Q Consensus       423 LEee~~eLseALaelQrkLeEe~aea~eLeqQls~LE~elkqLkQeLq~lE  473 (705)
                      |-.++    +-.+-++..|+|.-    .|-.-+..|..+...|+|+|+--.
T Consensus       142 LnqAI----ErnAfLESELdEke----~llesvqRLkdEardlrqelavr~  184 (333)
T KOG1853|consen  142 LNQAI----ERNAFLESELDEKE----VLLESVQRLKDEARDLRQELAVRT  184 (333)
T ss_pred             HHHHH----HHHHHHHHHhhHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22222    22333444444433    333334456667777777775433

>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]

Probab=83.87  E-value=1.1e+02  Score=37.09  Aligned_cols=32  Identities=31%  Similarity=0.391  Sum_probs=17.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 005259          434 LARIQRIADERTAKAGELEQKVAMLEVECATL  465 (705)
Q Consensus       434 LaelQrkLeEe~aea~eLeqQls~LE~elkqL  465 (705)
                      +..+-.+...++.+..++...++.+-.+++.+
T Consensus       239 le~i~~~~~dqlqel~~l~~a~~q~~ee~~~~  270 (716)
T KOG4593|consen  239 LEAINKNMKDQLQELEELERALSQLREELATL  270 (716)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555566666666666555555555433

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=83.26  E-value=63  Score=33.84  Aligned_cols=27  Identities=26%  Similarity=0.138  Sum_probs=15.9

Q ss_pred             HHHHHHHhHhhhhhhhhhHhhhcchhHH
Q 005259          633 VQLQKAAKLLDSGAVRATRFLWRYPIAR  660 (705)
Q Consensus       633 ~~vk~Aa~~lDs~slr~g~fLRRyP~AR  660 (705)
                      --++-++.++.-++.-+++=|+ ||+.-
T Consensus       199 aALgyvahlv~lls~yL~v~Lp-y~i~~  225 (302)
T PF10186_consen  199 AALGYVAHLVSLLSRYLGVPLP-YPITP  225 (302)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCC-CCccc
Confidence            3455666666666666666555 66443

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=83.08  E-value=21  Score=31.10  Aligned_cols=63  Identities=21%  Similarity=0.259  Sum_probs=43.3

Q ss_pred             HHhhhhhHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259          510 AENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQE  587 (705)
Q Consensus       510 l~~kl~s~E~elqkLr~e~~~~k~q~~els~q~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~  587 (705)
                      |+.++...=+.+..|+.++               .+|+.+...|.++-.......+.|..|+++|.-+|.-+..++++
T Consensus         9 LE~ki~~aveti~~Lq~e~---------------eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~~   71 (72)
T PF06005_consen    9 LEEKIQQAVETIALLQMEN---------------EELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKLEE   71 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHHHHHH---------------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            3444444445555555555               34555556666777777778888889999999999999988775

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=82.04  E-value=1e+02  Score=35.26  Aligned_cols=38  Identities=5%  Similarity=0.114  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259          547 EKRYRELTDLLY-YKQTQLETMASEKAAAEFQLEKEMNR  584 (705)
Q Consensus       547 E~rl~eLtE~L~-eKQ~qlE~L~~Er~sL~~qLE~~~~~  584 (705)
                      +.|+..|...-. .-..++..+..+...+..+|+.+..+
T Consensus       275 ~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~l~~a~~~  313 (457)
T TIGR01000       275 NSKLAQLKEQQLAKVKQEITDLNQKLLELESKIKSLKED  313 (457)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444443322 34455555555555555555554443

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=81.05  E-value=1.5e+02  Score=36.65  Aligned_cols=39  Identities=21%  Similarity=0.195  Sum_probs=19.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259          547 EKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRL  585 (705)
Q Consensus       547 E~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~  585 (705)
                      +.-.+.|++-|..|...|+....=.+--.-+|-.++.++
T Consensus       271 eeEnk~Lke~l~~k~~ELq~sr~~~a~ta~kL~~~e~ql  309 (769)
T PF05911_consen  271 EEENKMLKEALAKKNSELQFSRNMYAKTASKLSQLEAQL  309 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334456666666666666554443333333333333333

The function of this family is unknown.

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=81.04  E-value=76  Score=36.31  Aligned_cols=30  Identities=17%  Similarity=0.228  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259          413 KMAAMEREVELEHRAAEASMALARIQRIAD  442 (705)
Q Consensus       413 k~ea~~Re~eLEee~~eLseALaelQrkLe  442 (705)
                      +.....++.++.+..++..++.-+++++..
T Consensus        92 ~~r~~~eir~~~~q~~e~~n~~~~l~~~~~  121 (459)
T KOG0288|consen   92 RIRSLNEIRELREQKAEFENAELALREMRR  121 (459)
T ss_pred             HHHHHHHHHHHHHhhhhhccchhhHHHHHH
Confidence            334444555555555555655555554443

>PF15066 CAGE1: Cancer-associated gene protein 1 family

Probab=80.08  E-value=1.2e+02  Score=35.12  Aligned_cols=47  Identities=19%  Similarity=0.256  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 005259          423 LEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQEL  469 (705)
Q Consensus       423 LEee~~eLseALaelQrkLeEe~aea~eLeqQls~LE~elkqLkQeL  469 (705)
                      ++.....|.++++..|+.|+|-+.+-..|.-++.-+.+.|-.|+.+.
T Consensus       388 ~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry  434 (527)
T PF15066_consen  388 IEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERY  434 (527)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHH
Confidence            33444556778888888888888777777766666666666655444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	705
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-17
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-16
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	7e-13
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-12
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	5e-10
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-09
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-08
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	8e-13
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	7e-11
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-10
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-08
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	3e-08
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-06
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-05
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07
1sjj_A	863	Actinin; 3-helix bundle, calponin homology domain,	9e-07
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	6e-06
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	1e-05
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	9e-05
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	1e-04
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	3e-05
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	6e-04

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 86.4 bits (214), Expect = 2e-17
 Identities = 61/341 (17%), Positives = 139/341 (40%), Gaps = 43/341 (12%)

Query: 248  KEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSR 307
            ++  QL E + LL+  +       A    +   L+++ QE +    ++E  +  E E S+
Sbjct: 885  QKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQ 944

Query: 308  SYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLA 367
              +A  K+++Q++   + ++ + E+   +    K     T    I  ++    + E    
Sbjct: 945  QLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEK----VTADGKIKKMEDDILIMEDQNN 1000

Query: 368  SLQMNMESIMRNRELTETRMIQALREELASVERR-AEEERAAHNATKMAAMEREVELEHR 426
             L               T+  + L E ++ +    AEEE  A N TK+       + E  
Sbjct: 1001 KL---------------TKERKLLEERVSDLTTNLAEEEEKAKNLTKLKN-----KHESM 1040

Query: 427  AAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEE 486
             +E  + L + ++   E      +LE + + L  + A LQ ++ +++A+L + ++     
Sbjct: 1041 ISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEE----- 1095

Query: 487  ANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMEL 546
                 ++QA    +E     + +A  K+  LE+ +  ++ ++ +         +    + 
Sbjct: 1096 -----ELQAALARLEDETSQKNNALKKIRELESHISDLQEDLES--------EKAARNKA 1142

Query: 547  EKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQE 587
            EK+ R+L++ L   +T+LE      A  +     +     +
Sbjct: 1143 EKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDDD 1183

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 83.0 bits (205), Expect = 2e-16
 Identities = 57/321 (17%), Positives = 128/321 (39%), Gaps = 21/321 (6%)

Query: 284  RLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEA------ 337
             +Q    E  + +E         +  E +  QL +E ++ + ++       AEA      
Sbjct: 858  EMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVR 917

Query: 338  LAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELAS 397
            LAAK  E+E ++  ++A  ++       L + +  M+   +  +L E        EE  +
Sbjct: 918  LAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQ--QMLDLEEQL------EEEEA 969

Query: 398  VERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAM 457
              ++ + E+   +       +  + +E +  + +     ++    + T    E E+K   
Sbjct: 970  ARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKN 1029

Query: 458  LEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSL 517
            L       +  + ++E RLK+ ++KS +E  +  +    + E     +   + + +++ L
Sbjct: 1030 LTKLKNKHESMISELEVRLKK-EEKSRQELEKIKRK--LEGESSDLHEQIAELQAQIAEL 1086

Query: 518  EAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQ 577
            +A++ K   E+ A     E     +     K+ REL   +   Q  LE+  + +  AE Q
Sbjct: 1087 KAQLAKKEEELQAALARLEDE-TSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQ 1145

Query: 578  ---LEKEMNRLQEVQSEAERS 595
               L +E+  L+    +   +
Sbjct: 1146 KRDLSEELEALKTELEDTLDT 1166

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 71.4 bits (175), Expect = 7e-13
 Identities = 47/318 (14%), Positives = 125/318 (39%), Gaps = 23/318 (7%)

Query: 217  SESSLKDADVKVETLSNKRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLAR 276
            +E+ LK+ + K   L  ++     K       E +   EA+ +         +K+  L  
Sbjct: 876  AEAELKELEQKHTQLCEEKNLLQEKLQ----AETELYAEAEEMRVRL----AAKKQELEE 927

Query: 277  VCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVES---N 333
            +   + +R++E +  + QL+      ++     E ++++ E      + E    +     
Sbjct: 928  ILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKK 987

Query: 334  LAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRM------ 387
            + + +     +   L      L+++ +    NLA  +   +++ + +   E+ +      
Sbjct: 988  MEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVR 1047

Query: 388  ---IQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADER 444
                +  R+EL  ++R+ E E +  +        +  EL+ + A+    L       ++ 
Sbjct: 1048 LKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDE 1107

Query: 445  TAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERAR 504
            T++     +K+  LE   + LQ++L+  +A   + +K   ++ + + +++A + E+E   
Sbjct: 1108 TSQKNNALKKIRELESHISDLQEDLESEKAARNKAEK---QKRDLSEELEALKTELEDTL 1164

Query: 505  QGQRDAENKLSSLEAEVQ 522
                  +    S   +  
Sbjct: 1165 DTTATQQELRGSDYKDDD 1182

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 69.9 bits (171), Expect = 2e-12
 Identities = 47/304 (15%), Positives = 113/304 (37%), Gaps = 5/304 (1%)

Query: 312  RIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQM 371
            ++ + E+E+     E+ + +    +A A      +      +         +        
Sbjct: 851  KVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAE 910

Query: 372  NMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEAS 431
              E  MR R   + + ++ +  E+ +     EE      A K    ++ ++LE +  E  
Sbjct: 911  AEE--MRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEE 968

Query: 432  MALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAI 491
             A  ++Q        K  ++E  + ++E +   L +E + +E R+        EE  +A 
Sbjct: 969  AARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAK 1028

Query: 492  QMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSRE---EHMELEK 548
             +   +++ E           K      E++K++ ++     D      E   +  EL+ 
Sbjct: 1029 NLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKA 1088

Query: 549  RYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQSEAERSRVSRRSWSSWEED 608
            +  +  + L     +LE   S+K  A  ++ +  + + ++Q + E  + +R      + D
Sbjct: 1089 QLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRD 1148

Query: 609  AEMK 612
               +
Sbjct: 1149 LSEE 1152

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 61.8 bits (150), Expect = 5e-10
 Identities = 42/239 (17%), Positives = 87/239 (36%), Gaps = 13/239 (5%)

Query: 380  RELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQR 439
            ++L     IQ       +V               +    +E E++ +  E      R Q+
Sbjct: 816  QQLESIFCIQYNVRSFMNVXHWPWMXLFFXIXPLLKVTRQEEEMQAKDEELQRTKERQQK 875

Query: 440  IADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDE 499
               E      ELEQK   L  E   LQ++LQ         ++     A +  +++    E
Sbjct: 876  AEAELK----ELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHE 931

Query: 500  VERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSR------EEHMELEKRYREL 553
            +E       + E +   L+AE +KM+ +M  ++   E           E +  + + +++
Sbjct: 932  MEARI---EEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKM 988

Query: 554  TDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQSEAERSRVSRRSWSSWEEDAEMK 612
             D +   + Q   +  E+   E ++      L E + +A+     +    S   + E++
Sbjct: 989  EDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVR 1047

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 59.8 bits (145), Expect = 2e-09
 Identities = 33/256 (12%), Positives = 85/256 (33%), Gaps = 22/256 (8%)

Query: 247  TKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELS 306
              E+ ++ +    L+  +   ++   +L         ++++ + +   +E+      +  
Sbjct: 947  QAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKER 1006

Query: 307  RSYEARIKQLEQELSVYKSEV---TKVESNLAEALAAKNSEIETLVSSIDALKKQAALSE 363
            +  E R+  L   L+  + +    TK+++     ++     ++    S   L+K     E
Sbjct: 1007 KLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLE 1066

Query: 364  GNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVEL 423
            G  + L   +  +       +   +    EEL +   R E+E +  N        RE+E 
Sbjct: 1067 GESSDLHEQIAELQAQIAELK-AQLAKKEEELQAALARLEDETSQKN--NALKKIRELES 1123

Query: 424  EHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKS 483
                 +  +   +  R                   E +   L +EL+ ++  L+     +
Sbjct: 1124 HISDLQEDLESEKAAR----------------NKAEKQKRDLSEELEALKTELEDTLDTT 1167

Query: 484  PEEANQAIQMQAWQDE 499
              +           D+
Sbjct: 1168 ATQQELRGSDYKDDDD 1183

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 56.8 bits (137), Expect = 2e-08
 Identities = 41/210 (19%), Positives = 81/210 (38%), Gaps = 4/210 (1%)

Query: 248  KEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSR 307
             E+   D     ++  I   + +  +L +    L  R+ +  +  A+ EE      +L  
Sbjct: 976  LEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKN 1035

Query: 308  SYEARIKQLEQELSVYKSEVTKVE---SNLAEALAAKNSEIETLVSSIDALKKQAALSEG 364
             +E+ I +LE  L   +    ++E     L    +  + +I  L + I  LK Q A  E 
Sbjct: 1036 KHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEE 1095

Query: 365  NLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELE 424
             L +    +E    +++    + I+ L   ++ ++   E E+AA N  +    +   ELE
Sbjct: 1096 ELQAALARLED-ETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELE 1154

Query: 425  HRAAEASMALARIQRIADERTAKAGELEQK 454
                E    L       + R +   + + K
Sbjct: 1155 ALKTELEDTLDTTATQQELRGSDYKDDDDK 1184

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 70.9 bits (174), Expect = 8e-13
 Identities = 36/211 (17%), Positives = 79/211 (37%), Gaps = 5/211 (2%)

Query: 378  RNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMA-LAR 436
              R            + +  ++       A     K+    R VE   +        + +
Sbjct: 873  HVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQ 932

Query: 437  IQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAW 496
            +QR  DE+  +   L +K+  LE+  +T  ++L+    RL+  ++++    N+ + +   
Sbjct: 933  LQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSL--- 989

Query: 497  QDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDL 556
            Q+E+ + R+     + +  ++E    K + E   +  + +  +     E E+  R + D 
Sbjct: 990  QEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQ 1049

Query: 557  LYYKQTQLET-MASEKAAAEFQLEKEMNRLQ 586
                   +E  +  E    E  L  E  R Q
Sbjct: 1050 AKEITETMEKKLVEETKQLELDLNDERLRYQ 1080

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 64.7 bits (158), Expect = 7e-11
 Identities = 29/229 (12%), Positives = 81/229 (35%), Gaps = 22/229 (9%)

Query: 380  RELTETRMIQALREELASV----ERRAEEERAAHNATKMAAMEREVELEHRAAEASMALA 435
            R        Q +  E  S+      R    R  ++ T  A +  +       A+      
Sbjct: 850  RGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKR---EL 906

Query: 436  RIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLK--RGQKKSPEEANQA--I 491
            +  +I           ++    LE +   LQ+++ +     K    +  + E        
Sbjct: 907  KKLKIEARS---VERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETE 963

Query: 492  QMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYR 551
            ++++  + +  + +  ++A N++ SL+ E+ K+R E+          ++ E   +E+   
Sbjct: 964  KLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQ--------TQTEKKTIEEWAD 1015

Query: 552  ELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQSEAERSRVSRR 600
            +         ++L+   +     + +L + ++   +  +E    ++   
Sbjct: 1016 KYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEE 1064

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 63.2 bits (154), Expect = 2e-10
 Identities = 31/226 (13%), Positives = 82/226 (36%), Gaps = 13/226 (5%)

Query: 373  MESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASM 432
                       ++ +IQ       +          A    +        + E +  +   
Sbjct: 855  RNKYQMMLREHKSIIIQKHVRGWLA-RVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEA 913

Query: 433  -ALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAI 491
             ++ R +++      K  +L++K+     E  +L +++ ++E       +K         
Sbjct: 914  RSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEK--------- 964

Query: 492  QMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYR 551
             +++  + +  + +  ++A N++ SL+ E+ K+R E+   + + +    E   + +    
Sbjct: 965  -LRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTI-EEWADKYKHETE 1022

Query: 552  ELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQSEAERSRV 597
            +L   L  + T L+T   E         KE+    E +   E  ++
Sbjct: 1023 QLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQL 1068

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 56.7 bits (137), Expect = 2e-08
 Identities = 39/252 (15%), Positives = 88/252 (34%), Gaps = 12/252 (4%)

Query: 357  KQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAA 416
            ++AA++                 R      +IQ  +  +  V +R +  R A  A +   
Sbjct: 791  RRAAITIQRYVRGHQARCYATFLRRTRAAIIIQKFQR-MYVVRKRYQCMRDATIALQALL 849

Query: 417  MEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATL-------QQEL 469
                V  +++          IQ+      A+        A++ ++C           ++L
Sbjct: 850  RGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKL 909

Query: 470  QDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMA 529
            +     ++R +K      N+ +Q+Q   DE  +     +    K+++LE        ++ 
Sbjct: 910  KIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEY---KSLLEKMNNLEITYSTETEKLR 966

Query: 530  AMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQ 589
            +        S EE      R   L + +   + +L    +EK   E   +K  +  +++ 
Sbjct: 967  SDVERLRM-SEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLV 1025

Query: 590  SEAERSRVSRRS 601
            SE +      ++
Sbjct: 1026 SELKEQNTLLKT 1037

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 56.3 bits (136), Expect = 3e-08
 Identities = 38/256 (14%), Positives = 80/256 (31%), Gaps = 29/256 (11%)

Query: 279  AGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEAL 338
            A L   L   K +    E   +  ++  R + AR+             +  ++      +
Sbjct: 847  ALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRT-----LKAIVYLQCCYRRMM 901

Query: 339  AAK-NSEIETLVSSIDALKKQAALSEGNLASLQMNMESIM-RNRELTETRM-----IQAL 391
            A +   +++    S++  KK     E  +  LQ  ++      + L E            
Sbjct: 902  AKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTE 961

Query: 392  REELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGEL 451
             E+L S   R               +  + E+     E        + I +       E 
Sbjct: 962  TEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHET 1021

Query: 452  EQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAE 511
            EQ V+ L+ +   L+ E +++  R+    K+  E   + +                   E
Sbjct: 1022 EQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLV-----------------EE 1064

Query: 512  NKLSSLEAEVQKMRVE 527
             K   L+   +++R +
Sbjct: 1065 TKQLELDLNDERLRYQ 1080

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 51.3 bits (123), Expect = 1e-06
 Identities = 30/211 (14%), Positives = 68/211 (32%), Gaps = 39/211 (18%)

Query: 270  KEARLARVCAGLSSRLQEYK----SENAQLEELLVAERELSRSYEARIKQLEQELSVYKS 325
            +E +  ++ A    R ++      ++  QL+  +  + +  +S   ++  LE   S    
Sbjct: 904  RELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETE 963

Query: 326  EVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTET 385
            ++        E L     E +   + + +L+++                           
Sbjct: 964  KLRSDV----ERLRMSEEEAKNATNRVLSLQEE--------------------------- 992

Query: 386  RMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERT 445
              I  LR+EL   +   +      +  K    +   EL+ +          + R   ++ 
Sbjct: 993  --IAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQA 1050

Query: 446  AKAGELEQKVAMLEVECATLQQELQDMEARL 476
             +  E  +K   L  E   L+ +L D   R 
Sbjct: 1051 KEITETMEK--KLVEETKQLELDLNDERLRY 1079

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 47.4 bits (113), Expect = 1e-05
 Identities = 27/201 (13%), Positives = 61/201 (30%), Gaps = 15/201 (7%)

Query: 229  ETLSNKRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEY 288
             TL      Q         +E  +L      ++         E ++ +    L  ++ E 
Sbjct: 885  RTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQ----LQRKIDEQ 940

Query: 289  KSENA-------QLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAK 341
              E          LE     E E  RS   R++  E+E     + V     +L E +A  
Sbjct: 941  NKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRV----LSLQEEIAKL 996

Query: 342  NSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERR 401
              E+    +    +++ A   +     L   ++      +  +  + + + ++   +   
Sbjct: 997  RKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITET 1056

Query: 402  AEEERAAHNATKMAAMEREVE 422
             E++           +  E  
Sbjct: 1057 MEKKLVEETKQLELDLNDERL 1077

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 44.7 bits (106), Expect = 1e-04
 Identities = 25/218 (11%), Positives = 64/218 (29%), Gaps = 26/218 (11%)

Query: 400 RRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLE 459
             A   R    A  +   +R   +  R      A   +Q +      +     +   ML 
Sbjct: 808 CYATFLRRTRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVR----NKYQMMLR 863

Query: 460 VECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEA 519
              + + Q+            +    +A   +Q    +   +R  +  +     +   + 
Sbjct: 864 EHKSIIIQKHVRGWLARVHYHRT--LKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKK 921

Query: 520 EVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLE 579
               +  ++  ++R  +        E  K Y+ L +       ++  +    +    +L 
Sbjct: 922 LHIGLENKIMQLQRKID--------EQNKEYKSLLE-------KMNNLEITYSTETEKLR 966

Query: 580 KEMNRLQEVQSEAERSRVSRRSWSSWEEDAEMKSLENN 617
            ++ RL+  + EA+ +              E+  L   
Sbjct: 967 SDVERLRMSEEEAKNATNRVL-----SLQEEIAKLRKE 999

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 55.6 bits (133), Expect = 5e-08
 Identities = 73/593 (12%), Positives = 166/593 (27%), Gaps = 176/593 (29%)

Query: 214 PVNSESSLKDADVK-VE-----TLSNKRKQQALKADDPPTK--------EQDQLDEAQGL 259
            V  ++ + + D K V+      LS +     + + D  +            Q +  Q  
Sbjct: 23  SVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKF 82

Query: 260 LKTTISTGQS-KEARLARVCAGLSSRLQEYKSENAQL--EELLVAERELSRSYEARIKQL 316
           ++  +        + +       S   + Y  +  +L  +  + A+  +SR       +L
Sbjct: 83  VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR--LQPYLKL 140

Query: 317 EQELSVYKSE--VT--------KVESNLAEALAAKNSEIETL------------VSSIDA 354
            Q L   +    V         K  + +A      + +++               +S + 
Sbjct: 141 RQALLELRPAKNVLIDGVLGSGK--TWVA-LDVCLSYKVQCKMDFKIFWLNLKNCNSPET 197

Query: 355 -LKKQAALS---EGNLASLQMNMESIMRNRELTETRMIQALREE--------LASVERRA 402
            L+    L    + N  S   +  +I       +  + + L+ +        L +V+   
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK 257

Query: 403 EEE------------RAAHNATKMAAMER-EVELEHRA-----AEASMALARIQRIADER 444
                          R       ++A     + L+H +      E    L +        
Sbjct: 258 AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC---- 313

Query: 445 TAKAGEL-EQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERA 503
             +  +L  + +       + + + ++D  A     +  + ++    I+           
Sbjct: 314 --RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES---------- 361

Query: 504 RQGQRDAENKLSSLE-AEVQKMRVEMAAMKRDA-----------EHYSREEHME------ 545
                     L+ LE AE +KM   ++     A               + + M       
Sbjct: 362 ---------SLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH 412

Query: 546 ----LEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQSEAERSRVSRRS 601
               +EK+ +E T  +      LE     K   E+ L + +     V             
Sbjct: 413 KYSLVEKQPKEST--ISIPSIYLEL--KVKLENEYALHRSI-----V------------- 450

Query: 602 WSSWEEDAEMKSLENNGRPLP------LHH--RHIAGASVQLQKAA----KLLD----SG 645
               +     K+ +++    P        H   H+       ++        LD      
Sbjct: 451 ----DHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE-HPERMTLFRMVFLDFRFLEQ 505

Query: 646 AVRATRFLWRYPIARIILL----FYLVFV-------HLFLMYLLHRLQEQADN 687
            +R     W    + +  L    FY  ++          +  +L  L +  +N
Sbjct: 506 KIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEEN 558

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.3 bits (127), Expect = 3e-07
 Identities = 45/332 (13%), Positives = 89/332 (26%), Gaps = 82/332 (24%)

Query: 4   WLK-----AAEDLFEVVDRRAKLVVNELADEQSDFQTPASNGQGSQAKKIKSRIKAQRRH 58
           WL      + E + E++ +    +                       +    R+   + +
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH--SIQAELRRLLKSKPY 243

Query: 59  SADESLKINDTAREQANTQASPVDVTPNKDTATLAVE-KETITTGKTQKNGEQQQTNERD 117
                L +               +V   K      +  K  +TT              R 
Sbjct: 244 E--NCLLVLL-------------NVQNAKAWNAFNLSCKILLTT--------------RF 274

Query: 118 APSIPLTEQSKDMSKHDADRVEIPETFTDLDTATPNGEILNENDSDVHLNHPPSPLP--- 174
                +T+     +           T T  +       +L        L+  P  LP   
Sbjct: 275 KQ---VTDFLSAATTTHISLDHHSMTLTPDEVK----SLL----LKY-LDCRPQDLPREV 322

Query: 175 ----PKEMGIVNEDRIDDAGQIT--KSADADAPLK-IDSKIQAVDPPVNSE--SSL---- 221
               P+ + I+ E   D        K  + D     I+S +  ++P    +    L    
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP 382

Query: 222 KDADVKVETLSNKRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGL 281
             A +    LS       +  D     + D +     L K ++   Q KE+ +      +
Sbjct: 383 PSAHIPTILLS------LIWFDV---IKSDVMVVVNKLHKYSLVEKQPKESTI-----SI 428

Query: 282 SSRLQEYK---SENAQLEELLVAERELSRSYE 310
            S   E K        L   +V    + ++++
Sbjct: 429 PSIYLELKVKLENEYALHRSIVDHYNIPKTFD 460

>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Length = 863

 Score = 51.4 bits (122), Expect = 9e-07
 Identities = 47/397 (11%), Positives = 115/397 (28%), Gaps = 8/397 (2%)

Query: 204 IDSKIQAVDPPVNSESSLKDADVKVETLSNKRKQQALKADDPPTKEQDQLDEAQGLLKTT 263
            ++ +Q  D    + S +K    K E   +       + +      Q+  +       + 
Sbjct: 389 KEAMLQQKDYETATLSEIKALLKKHEAFESDLAAHQDRVEQIAAIAQELNELDYYDSPSV 448

Query: 264 ISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVY 323
            +  Q    +   + A    R +  +     LE +     E ++        +E  +   
Sbjct: 449 NARCQKICDQWDNLGALTQKRREALERTEKLLETIDQLYLEYAKRAAPFNNWMEGAMEDL 508

Query: 324 KSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELT 383
           +           + L   + + +  +   D  ++        ++ +       M      
Sbjct: 509 QDTFIVHTIEEIQGLTTAHEQFKATLPDADKERQAILGIHNEVSKIVQTYHVNMAGTNPY 568

Query: 384 ETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADE 443
            T   Q +  +   V +       A         + E   +   A+A++    IQ   +E
Sbjct: 569 TTITPQEINGKWEHVRQLVPRRDQALMEEHARQQQNERLRKQFGAQANVIGPWIQTKMEE 628

Query: 444 RTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERA 503
               + E+   +          ++ + + + ++ +      E  +Q IQ +A   + +  
Sbjct: 629 IGRISIEMHGTLEDQLNHLRQYEKSIVNYKPKIDQL-----EGDHQQIQ-EALIFDNKHT 682

Query: 504 RQGQRDAENKLSSLEAEVQKM--RVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQ 561
                        L   + +    VE   + RDA+  S+E+  E    +           
Sbjct: 683 NYTMEHIRVGWEQLLTTIARTINEVENQILTRDAKGISQEQMNEFRASFNHFDRKKTGMM 742

Query: 562 TQLETMASEKAAAEFQLEKEMNRLQEVQSEAERSRVS 598
              +  A   +      E E  R+  +        V+
Sbjct: 743 DCEDFRACLISMGYNMGEAEFARIMSIVDPNRMGVVT 779

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861

 Score = 48.7 bits (115), Expect = 6e-06
 Identities = 35/226 (15%), Positives = 77/226 (34%), Gaps = 3/226 (1%)

Query: 370 QMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAE 429
            +  +   +N        +        +        +A   A           ++ ++ E
Sbjct: 585 SVTFDDFHKNSARIIRMAVFGFEMSEDTGPDGTLLPKARDQAVFPQNGLVVSSVDVQSVE 644

Query: 430 ASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEA-N 488
                 R       + A       + A  + E   L+QE +    R K   +   E+A  
Sbjct: 645 PVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARK 704

Query: 489 QAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEK 548
           + ++++A    VE     + +AE++  +   E +   V  A +K  A     E  +E  K
Sbjct: 705 ELLELEAMSMAVESTGNAKAEAESRAEAARIEGEG-SVLQAKLKAQALAIETEAELERVK 763

Query: 549 RYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQSEAER 594
           + RE+ +L+Y +      ++  +  A  + +K     + +     R
Sbjct: 764 KVREM-ELIYARAQLELEVSKAQQLANVEAKKFKEMTEALGPGTIR 808

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861

 Score = 47.5 bits (112), Expect = 1e-05
 Identities = 37/257 (14%), Positives = 84/257 (32%), Gaps = 8/257 (3%)

Query: 277 VCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAE 336
            C  ++SR++   +     ++       + R      +  E             +  +  
Sbjct: 571 ACKAIASRVRGAVAS-VTFDDFHKNSARIIRMAVFGFEMSEDTGPDGTLLPKARDQAVFP 629

Query: 337 ALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELA 396
                 S ++         + + AL      ++++   S     +    R+ Q  R  L 
Sbjct: 630 QNGLVVSSVDVQSVEPVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLE 689

Query: 397 --SVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQK 454
              +  ++E E+A     ++ AM   VE    A   + + A   RI  E +    +L+ +
Sbjct: 690 RQKILDQSEAEKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQ 749

Query: 455 VAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKL 514
              +E E A L++  +  E  L   + +   E ++A Q+      VE  +  +       
Sbjct: 750 ALAIETE-AELERVKKVREMELIYARAQLELEVSKAQQLA----NVEAKKFKEMTEALGP 804

Query: 515 SSLEAEVQKMRVEMAAM 531
            ++             +
Sbjct: 805 GTIRDLAVAGPEMQVKL 821

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861

 Score = 44.8 bits (105), Expect = 9e-05
 Identities = 48/288 (16%), Positives = 104/288 (36%), Gaps = 11/288 (3%)

Query: 301 AERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSI---DALKK 357
           A  +L  +Y    +   +      +++  V   + +A  A  S +   V+S+   D  K 
Sbjct: 535 ARLQLQLAYNWHFELKNRNDPAEAAKLFSVPDFVGDACKAIASRVRGAVASVTFDDFHKN 594

Query: 358 QAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAM 417
            A +    +   +M+ ++      L + R      +    V     +     +     A+
Sbjct: 595 SARIIRMAVFGFEMSEDTGPDGTLLPKARDQAVFPQNGLVVSSVDVQSVEPVDQRTRDAL 654

Query: 418 EREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLK 477
           +R V+L       S   A             G LE++  + + E    ++EL ++EA   
Sbjct: 655 QRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEAMSM 714

Query: 478 RGQKKSPEEANQAIQMQAWQDEVERA-RQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAE 536
             +     +A    + +A + E E +  Q +  A+      EAE+++++       R+ E
Sbjct: 715 AVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELERVK-----KVREME 769

Query: 537 HYSREEHMELE-KRYRELTDLLYYKQTQLET-MASEKAAAEFQLEKEM 582
                  +ELE  + ++L ++   K  ++   +             EM
Sbjct: 770 LIYARAQLELEVSKAQQLANVEAKKFKEMTEALGPGTIRDLAVAGPEM 817

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861

 Score = 44.4 bits (104), Expect = 1e-04
 Identities = 40/241 (16%), Positives = 79/241 (32%), Gaps = 9/241 (3%)

Query: 282 SSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAK 341
           S+R+        ++ E    +  L      +    +  L V   +V  VE         +
Sbjct: 595 SARIIRMAVFGFEMSEDTGPDGTLLPKARDQAVFPQNGLVVSSVDVQSVE------PVDQ 648

Query: 342 NSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERR 401
            +      S   A++      E         +E   R R   +  + Q+  E+       
Sbjct: 649 RTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLE 708

Query: 402 AEEERAAHNATKMAAMEREVELEHR--AAEASMALARIQRIADERTAKAGELEQKVAMLE 459
            E    A  +T  A  E E   E      E S+  A+++  A     +A ELE+   + E
Sbjct: 709 LEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEA-ELERVKKVRE 767

Query: 460 VECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEA 519
           +E    + +L+   ++ ++      ++  +  +        + A  G       L SL  
Sbjct: 768 MELIYARAQLELEVSKAQQLANVEAKKFKEMTEALGPGTIRDLAVAGPEMQVKLLQSLGL 827

Query: 520 E 520
           +
Sbjct: 828 K 828

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 46.2 bits (110), Expect = 3e-05
 Identities = 26/252 (10%), Positives = 69/252 (27%), Gaps = 18/252 (7%)

Query: 377  MRNRELTET-RMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALA 435
             R + L         L+   A+   +   ++ A  + +       +E       A     
Sbjct: 757  AREQRLGSEQTKSDYLK--RANELVQWINDKQA--SLESRDFGDSIESVQSFMNAHKEYK 812

Query: 436  RIQRIADERTA-------KAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEAN 488
            + ++    +          + + + ++   E   A       ++++     +K   E A 
Sbjct: 813  KTEKPPKGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAE 872

Query: 489  QAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEK 548
                    Q ++    Q       KL +                      ++ +   LE 
Sbjct: 873  ALRIELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLK--NLEA 930

Query: 549  RYRELTDLLYYKQTQLETMASEKAAAEFQLEKEM----NRLQEVQSEAERSRVSRRSWSS 604
               E   L     + L ++ ++     +    E+    +     Q    +S       + 
Sbjct: 931  FDGECQSLEGQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTL 990

Query: 605  WEEDAEMKSLEN 616
              E   ++ +E+
Sbjct: 991  LAELERLQKIED 1002

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 39.9 bits (92), Expect = 6e-04
 Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 8/34 (23%)

Query: 313 IKQLEQELSVYKSEVTKVESNLAEALAAKNSEIE 346
           +K+L+  L +Y       +S  A ALA   + +E
Sbjct: 22  LKKLQASLKLYAD-----DS--APALAI-KATME 47

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	705
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	99.88
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	99.13
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	99.0
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	98.75
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	98.62
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	97.31
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	97.21
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	96.8
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	96.71
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	96.56
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	96.56
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	96.18
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	95.94
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	95.9
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	95.63
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	95.05
4gkw_A	167	Spindle assembly abnormal protein 6; double helix,	94.07
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	94.06
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	93.93
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	93.9
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	93.07
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	93.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	92.45
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	92.27
1x79_B	112	RAB GTPase binding effector protein 1; rabaptin5,	91.82
2e7s_A	135	RAB guanine nucleotide exchange factor SEC2; coile	90.95
4gkw_A	167	Spindle assembly abnormal protein 6; double helix,	89.68
2e7s_A	135	RAB guanine nucleotide exchange factor SEC2; coile	88.69
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	88.08
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	88.07
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	87.84
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	87.18
2b9c_A	147	Striated-muscle alpha tropomyosin; alpha-helix, co	85.38
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	84.64
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	83.52
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	83.47
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	83.41
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	83.26
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	82.98
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	82.97
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	82.89
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	81.58
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	81.58
1x79_B	112	RAB GTPase binding effector protein 1; rabaptin5,	81.22
2b9c_A	147	Striated-muscle alpha tropomyosin; alpha-helix, co	80.63
3cve_A	72	Homer protein homolog 1; coiled coil, alternative	80.56
3s4r_A	93	Vimentin; alpha-helix, cytoskeleton, intermediate	80.52
3s4r_A	93	Vimentin; alpha-helix, cytoskeleton, intermediate	80.07

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=99.88  E-value=2.4e-21  Score=187.04  Aligned_cols=159  Identities=23%  Similarity=0.227  Sum_probs=139.7

Q ss_pred             hcCCCCchhhhhHHHHHHHHHhhhhhcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 005259          241 KADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQEL  320 (705)
Q Consensus       241 ~~~ek~~~lqkQLee~n~~LrsE~eal~~ke~qLa~~~~RLrk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL  320 (705)
                      +.|||+++|++||+|+|.+||+|+|+           ++||+|..+++.+..+++|..+++++++++.|+.....|+.++
T Consensus         3 ~~neKi~~LekQL~E~n~kLk~EsE~-----------~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~   71 (168)
T 3o0z_A            3 LANEKLSQLQKQLEEANDLLRTESDT-----------AVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDY   71 (168)
T ss_dssp             -------CTHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHHhHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36899999999999999999999996           9999999999999999999999999999999999888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHH----HHHH
Q 005259          321 SVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALR----EELA  396 (705)
Q Consensus       321 ~~EQ~~l~q~es~~~ealsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE----~eLk  396 (705)
                      ...|..+.+.++ ...   -+.+.+.+|++++.+|+.++.+++.++.+++.+++.|++++++++|+ +++++    ++|+
T Consensus        72 ~~LQa~L~qEr~-~r~---q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe-~a~~eid~~~eLK  146 (168)
T 3o0z_A           72 YQLQAILEAERR-DRG---HDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKE-KNNLEIDLNYKLK  146 (168)
T ss_dssp             HHHHHHHHHHHH-HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHH
Confidence            888888888876 222   36778889999999999999999999999999999999999999999 99999    8899


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 005259          397 SVERRAEEERAAHNATKMA  415 (705)
Q Consensus       397 slq~~le~E~~aH~aTk~e  415 (705)
                      ++|++|++|..+|++|++.
T Consensus       147 alQ~~~eqE~~~H~~Tkar  165 (168)
T 3o0z_A          147 SLQQRLEQEVNEHKVTKAR  165 (168)
T ss_dssp             HHHHHHHHHHHHHCC----
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999773

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=99.13  E-value=8.3e-06  Score=79.89  Aligned_cols=35  Identities=9%  Similarity=0.056  Sum_probs=13.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259          549 RYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMN  583 (705)
Q Consensus       549 rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~  583 (705)
                      ++..+...+...+..+..+..+.+.+..++.++..
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (284)
T 1c1g_A          238 RAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISE  272 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333334444444444444444443333

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=99.00  E-value=2.9e-05  Score=76.03  Aligned_cols=41  Identities=15%  Similarity=0.122  Sum_probs=23.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259          545 ELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRL  585 (705)
Q Consensus       545 elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~  585 (705)
                      .++..+..+...+...+..+..+....+.+..+++.+..++
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  281 (284)
T 1c1g_A          241 FAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDM  281 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33445555555555555566666666666666666555443

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=98.75  E-value=1.6e-08  Score=123.36  Aligned_cols=39  Identities=18%  Similarity=0.158  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259          546 LEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNR  584 (705)
Q Consensus       546 lE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~  584 (705)
                      ++.++..|.++|.+.......+..++..+..+++.+..+
T Consensus      1121 Le~eie~L~eeLee~~~~~~~le~q~~~L~~ele~L~~~ 1159 (1184)
T 1i84_S         1121 LESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTE 1159 (1184)
T ss_dssp             ---------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444444444444444433

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=98.62  E-value=6.7e-08  Score=118.06  Aligned_cols=100  Identities=12%  Similarity=0.065  Sum_probs=41.2

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 005259          279 AGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQ  358 (705)
Q Consensus       279 ~RLrk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le~rl~~Le~e  358 (705)
                      ..|++.+.+++.....++..+.++......|+.++..++.+|..++..+...+..    +......+..|+.++..++.+
T Consensus       860 ~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e~~----l~~l~~~~~~Le~~l~ele~e  935 (1184)
T 1i84_S          860 QAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEM----RVRLAAKKQELEEILHEMEAR  935 (1184)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence            3344445555555555555555555555666666666666665555544443331    122233444444444444444


Q ss_pred             HHHHHhHHHHHHHHHHHHHHHhhh
Q 005259          359 AALSEGNLASLQMNMESIMRNREL  382 (705)
Q Consensus       359 l~~~K~rleele~E~~rl~e~l~~  382 (705)
                      +...+..+.+++.++..+...+..
T Consensus       936 lee~ee~l~el~~e~~~le~el~~  959 (1184)
T 1i84_S          936 IEEEEERSQQLQAEKKKMQQQMLD  959 (1184)
T ss_dssp             HHHHHHC-----------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444333333

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=97.31  E-value=0.066  Score=52.99  Aligned_cols=140  Identities=16%  Similarity=0.182  Sum_probs=74.4

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 005259          299 LVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMR  378 (705)
Q Consensus       299 l~el~e~~~~L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e  378 (705)
                      +.--++.+..+..++.+++.+|..-|+.=..++.              +|+..|..++.....++.++..+..+.+.++.
T Consensus        12 ~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~--------------ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~   77 (189)
T 2v71_A           12 TAYWKELSMKYKQSFQEARDELVEFQEGSRELEA--------------ELEAQLVQAEQRNRDLQADNQRLKYEVEALKE   77 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455566666777777787775555555554              55556666666666666666666666666655


Q ss_pred             HhhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259          379 NRELTETR---MIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKV  455 (705)
Q Consensus       379 ~l~~~eke---ilqSLE~eLkslq~~le~E~~aH~aTk~ea~~Re~eLEee~~eLseALaelQrkLeEe~aea~eLeqQl  455 (705)
                      ++.....+   .+++|+.+|..++..           +.....++.+||..|..|..+.-+..-.+..--.+...+=++.
T Consensus        78 K~~~~~~e~~~~~~~Lq~el~~l~~~-----------~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~  146 (189)
T 2v71_A           78 KLEHQYAQSYKQVSVLEDDLSQTRAI-----------KEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERN  146 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            55543111   255555555555432           3333446666666665555444333333333333333333444


Q ss_pred             HhHHHHHH
Q 005259          456 AMLEVECA  463 (705)
Q Consensus       456 s~LE~elk  463 (705)
                      .+|+.+++
T Consensus       147 alLE~El~  154 (189)
T 2v71_A          147 AFLESELD  154 (189)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            44444443

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=97.21  E-value=0.099  Score=50.80  Aligned_cols=93  Identities=16%  Similarity=0.139  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 005259          383 TETRMIQALREELASVERRAEEERAAHNATK---MAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLE  459 (705)
Q Consensus       383 ~ekeilqSLE~eLkslq~~le~E~~aH~aTk---~ea~~Re~eLEee~~eLseALaelQrkLeEe~aea~eLeqQls~LE  459 (705)
                      +... +.+|+.++..+|..++.|+.......   .+...|...|+.+...+-..+..+.-.-..-.-++..|++..+.++
T Consensus        60 L~~~-k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~e  138 (168)
T 3o0z_A           60 LENS-KSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLE  138 (168)
T ss_dssp             HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            3344 55666667777777777766432222   2222333333333311111111111111111133455555556666


Q ss_pred             ----HHHHHHHHHHHHHHHHH
Q 005259          460 ----VECATLQQELQDMEARL  476 (705)
Q Consensus       460 ----~elkqLkQeLq~lE~e~  476 (705)
                          ++++.+++.++.-...+
T Consensus       139 id~~~eLKalQ~~~eqE~~~H  159 (168)
T 3o0z_A          139 IDLNYKLKSLQQRLEQEVNEH  159 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence                45666666665544443

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=96.80  E-value=0.34  Score=49.47  Aligned_cols=30  Identities=7%  Similarity=0.142  Sum_probs=12.1

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 005259          353 DALKKQAALSEGNLASLQMNMESIMRNREL  382 (705)
Q Consensus       353 ~~Le~el~~~K~rleele~E~~rl~e~l~~  382 (705)
                      .++..++..++.++..++.+...+++.+..
T Consensus        93 ~aL~kEie~~~~~i~~lE~eile~~e~ie~  122 (256)
T 3na7_A           93 RSLNIEEDIAKERSNQANREIENLQNEIKR  122 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333444444444444444444444333

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=96.71  E-value=0.28  Score=48.51  Aligned_cols=159  Identities=14%  Similarity=0.183  Sum_probs=91.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcc
Q 005259          405 ERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERT----AKAGELEQKVAMLEVECATLQQELQDMEARLKRGQ  480 (705)
Q Consensus       405 E~~aH~aTk~ea~~Re~eLEee~~eLseALaelQrkLeEe~----aea~eLeqQls~LE~elkqLkQeLq~lE~e~~r~q  480 (705)
                      |...++..-.+...+...++.+-.++.+.-.+++..++.+.    .+...|..++..|..++..++.++.....+...  
T Consensus        11 e~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~--   88 (189)
T 2v71_A           11 ETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYK--   88 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence            34444444444455566666666555555555555444444    445677777777777777777666554443332  


Q ss_pred             cCChHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhhHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHH
Q 005259          481 KKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYK  560 (705)
Q Consensus       481 ek~~~ea~q~~qL~~Lk~EL~~~rq~qr~l~~kl~s~E~elqkLr~e~~~~k~q~~els~q~~~elE~rl~eLtE~L~eK  560 (705)
                                 ++-.|+.|+..++...+.+..+|..+|..+..|.......        ......++.+++...+..+-.
T Consensus        89 -----------~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~--------~~SleD~e~kln~aiEr~alL  149 (189)
T 2v71_A           89 -----------QVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRAT--------IMSLEDFEQRLNQAIERNAFL  149 (189)
T ss_dssp             -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH--------HhhHHHHHHHHHHHHHHHHHH
Confidence                       2345777787777777777777777887777777665331        222356777777776666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259          561 QTQLETMASEKAAAEFQLEKEMNRLQEV  588 (705)
Q Consensus       561 Q~qlE~L~~Er~sL~~qLE~~~~~~~~e  588 (705)
                      +..++    |+..|...++|+.--++.-
T Consensus       150 E~El~----EKe~l~~~~QRLkdE~rDL  173 (189)
T 2v71_A          150 ESELD----EKESLLVSVQRLKDEARDL  173 (189)
T ss_dssp             HHHHH----HHHHHHCCC----------
T ss_pred             HHHHH----HHHHHHHHHHHHHHHHHHH
Confidence            66555    5677766666655444443

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=96.56  E-value=0.057  Score=65.82  Aligned_cols=98  Identities=10%  Similarity=0.194  Sum_probs=27.8

Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 005259          273 RLARVCAGLSSRLQEYKSENAQLEELLVAERELSRS----YEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETL  348 (705)
Q Consensus       273 qLa~~~~RLrk~~~elks~~aqLEell~el~e~~~~----L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~L  348 (705)
                      .|...+.+|+..+.++..++..+|..+..++++.+.    +..++..|+.++..++......        ...++.+..|
T Consensus       918 ~l~~~~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~~~~e~--------~~~~~~v~~L  989 (1080)
T 2dfs_A          918 RYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEA--------KNATNRVLSL  989 (1080)
T ss_dssp             ---------------------------------CHHHHHHHHHHHHHHHHTHHHHHHHHHHH--------HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHH
Confidence            455567888888888888887777777777766543    3334555555444433321111        1223444445


Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 005259          349 VSSIDALKKQAALSEGNLASLQMNMESIMR  378 (705)
Q Consensus       349 e~rl~~Le~el~~~K~rleele~E~~rl~e  378 (705)
                      +.++..+++++..+......+++...++++
T Consensus       990 ~~e~~~l~~~~~~~~ke~~~lee~~~~~~~ 1019 (1080)
T 2dfs_A          990 QEEIAKLRKELHQTQTEKKTIEEWADKYKH 1019 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555544444444444444444443

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=96.56  E-value=0.37  Score=49.16  Aligned_cols=55  Identities=18%  Similarity=0.195  Sum_probs=28.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 005259          340 AKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVER  400 (705)
Q Consensus       340 ak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~  400 (705)
                      ..+..+.++...+..++.++...+.++.+.+..+..+.     ..++ +++|..+|..++.
T Consensus        50 ~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~-----~~kE-~~aL~kEie~~~~  104 (256)
T 3na7_A           50 NLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIK-----SERE-LRSLNIEEDIAKE  104 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS-----SSSH-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-----CHHH-HHHHHHHHHHHHH
Confidence            34444555555666666666666666665555543322     2333 5555555555543

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=96.18  E-value=0.16  Score=61.85  Aligned_cols=25  Identities=28%  Similarity=0.348  Sum_probs=12.5

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHH
Q 005259          450 ELEQKVAMLEVECATLQQELQDMEA  474 (705)
Q Consensus       450 eLeqQls~LE~elkqLkQeLq~lE~  474 (705)
                      +|+.+++.|+.+...|++.+++++.
T Consensus      1020 ~L~~kv~~L~~e~~~L~qq~~~l~~ 1044 (1080)
T 2dfs_A         1020 ETEQLVSELKEQNTLLKTEKEELNR 1044 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444455555555555555555553

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=95.94  E-value=1.6  Score=58.60  Aligned_cols=50  Identities=24%  Similarity=0.262  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcc
Q 005259          431 SMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQ  480 (705)
Q Consensus       431 seALaelQrkLeEe~aea~eLeqQls~LE~elkqLkQeLq~lE~e~~r~q  480 (705)
                      ...+...+.+|.+...++.+++.++..|..+++.+..+-+.++.+....+
T Consensus      2020 e~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~ 2069 (3245)
T 3vkg_A         2020 ENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVK 2069 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444555555555555555555555555555555555555444444

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=95.90  E-value=2.8  Score=56.51  Aligned_cols=91  Identities=15%  Similarity=0.237  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHHhhhHHHHhhhhhHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259          493 MQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKA  572 (705)
Q Consensus       493 L~~Lk~EL~~~rq~qr~l~~kl~s~E~elqkLr~e~~~~k~q~~els~q~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~  572 (705)
                      |..++.++.........++.+|..+++.++.|+.+.+....        ....++.++.....+|..-+.-+..|..|+.
T Consensus      2016 l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~--------ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~ 2087 (3245)
T 3vkg_A         2016 VEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIR--------ETEQIKTESSKVKNKVDRSIALLDNLNSERG 2087 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence            33445555555555555566666667777777766643221        1356677778888888888899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 005259          573 AAEFQLEKEMNRLQEVQSE  591 (705)
Q Consensus       573 sL~~qLE~~~~~~~~e~~~  591 (705)
                      -|..+.+.+..++..--+.
T Consensus      2088 RW~~~~~~l~~~~~~L~GD 2106 (3245)
T 3vkg_A         2088 RWEQQSENFNTQMSTVVGD 2106 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhccHH
Confidence            9999999888877776553

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=95.63  E-value=1.3  Score=42.40  Aligned_cols=118  Identities=11%  Similarity=0.121  Sum_probs=66.9

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259          347 TLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHR  426 (705)
Q Consensus       347 ~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLkslq~~le~E~~aH~aTk~ea~~Re~eLEee  426 (705)
                      +|++.+..+..++...+.++..++....++..    +..+ +.....+++.++..+..|...    +..+......++.+
T Consensus        17 ~LeD~L~~~R~el~~~~~ri~~lE~~r~~~~~----l~~~-~~~~~~e~~~L~~~l~~E~~~----R~~aE~~~~~ie~E   87 (154)
T 2ocy_A           17 HLEEQLNKSLKTIASQKAAIENYNQLKEDYNT----LKRE-LSDRDDEVKRLREDIAKENEL----RTKAEEEADKLNKE   87 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH----HHTH-HHHHHHHHHHHHHHHHHHHHH----HHHHHTHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH-HhhhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence            45555555555555555555554443332221    2223 344566677787777776554    55566677788888


Q ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 005259          427 AAEASMAL-ARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDME  473 (705)
Q Consensus       427 ~~eLseAL-aelQrkLeEe~aea~eLeqQls~LE~elkqLkQeLq~lE  473 (705)
                      ..+|+.+| .+..+.+..++.....++.+...|+..+..-...|..++
T Consensus        88 lEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq  135 (154)
T 2ocy_A           88 VEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLT  135 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888887 445666666665555555555555444444444443333

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=95.05  E-value=1.1  Score=42.96  Aligned_cols=85  Identities=19%  Similarity=0.277  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHHHhhhHHHHhhhhhHHHHHHHHHHHH--HHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259          493 MQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEM--AAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASE  570 (705)
Q Consensus       493 L~~Lk~EL~~~rq~qr~l~~kl~s~E~elqkLr~e~--~~~k~q~~els~q~~~elE~rl~eLtE~L~eKQ~qlE~L~~E  570 (705)
                      +..|..++...+.....++......+.|+..|...+  ++++  |..--.-....++.++..|..+|.++...++.+...
T Consensus        60 ~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~--MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~q  137 (154)
T 2ocy_A           60 VKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANN--MVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQ  137 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444556666666666666777777777877777765  1111  110001124678899999999999999999988887


Q ss_pred             HHHHHHHHH
Q 005259          571 KAAAEFQLE  579 (705)
Q Consensus       571 r~sL~~qLE  579 (705)
                      ...|..-++
T Consensus       138 l~~LK~v~~  146 (154)
T 2ocy_A          138 LKNLKKVMH  146 (154)
T ss_dssp             HHHHHHTTS
T ss_pred             HHHHHHHHH
Confidence            777665443

>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}

Probab=94.07  E-value=3.1  Score=38.90  Aligned_cols=127  Identities=20%  Similarity=0.230  Sum_probs=75.6

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHcccCChHHHHHHHHHHH----HHHHHHHHHhhhHHHHhhhhhHHHHHHHHHHHHHH
Q 005259          455 VAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQA----WQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAA  530 (705)
Q Consensus       455 ls~LE~elkqLkQeLq~lE~e~~r~qek~~~ea~q~~qL~~----Lk~EL~~~rq~qr~l~~kl~s~E~elqkLr~e~~~  530 (705)
                      +..|+.++++++.+++....++.-.-+-+.++...+-||+.    -+.||..+|-....       .+..+++....+..
T Consensus        13 ia~L~~D~~s~~~eleEnqeEL~iVgkML~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~-------~QRn~~K~~~~Lkr   85 (167)
T 4gkw_A           13 VADLKQDTESLQKQLEENQEELEIVGNMLREEQGKVDQLQKRNVAHQKEIGKLRAELGT-------AQRNLEKADQLLKR   85 (167)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHH-------HHHhHHHHHHHHHh
Confidence            45566777777777777666666555444445444444433    24555554433332       22333333332222


Q ss_pred             hhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005259          531 MKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQSEAE  593 (705)
Q Consensus       531 ~k~q~~els~q~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~~~~~~e~~~~~  593 (705)
                      +..+    +.|-+.. =+.+++|--.|.+|-+.++.|..-.-.|+..||...-++.+.-..++
T Consensus        86 n~~q----QnQQSlD-iRKLrELEADLKEKDsMVe~LT~TiG~LrKELEdEklK~~E~MdSFE  143 (167)
T 4gkw_A           86 NSQQ----QNQQSLD-MRKLGELEADLKEKDSMVESLTETIGILRKELENEKLKAAENMDSFE  143 (167)
T ss_dssp             HHHH----HHHHHHH-HHHTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHH----HhHhhhh-HHHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1111    1222222 25679999999999999999999999999999987777666544443

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=94.06  E-value=4.4  Score=38.86  Aligned_cols=30  Identities=27%  Similarity=0.452  Sum_probs=16.3

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 005259          348 LVSSIDALKKQAALSEGNLASLQMNMESIM  377 (705)
Q Consensus       348 Le~rl~~Le~el~~~K~rleele~E~~rl~  377 (705)
                      +++.+..++..+.....++..++.+++.+-
T Consensus        26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~   55 (155)
T 2efr_A           26 LKKLLERAEERAELSEGKSAELEEELKTVT   55 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555555555555555555554443

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=93.93  E-value=3.8  Score=37.71  Aligned_cols=101  Identities=11%  Similarity=0.034  Sum_probs=64.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 005259          282 SSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAAL  361 (705)
Q Consensus       282 rk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le~rl~~Le~el~~  361 (705)
                      .+.+..++.....-|....++.+....|...+..|+..|..++..+...+..+. +   .......|+..+..++..+..
T Consensus        19 ~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~-~---L~~~k~eLe~~l~el~~rlee   94 (129)
T 2fxo_A           19 KEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCD-Q---LIKNKIQLEAKVKEMNKRLED   94 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-H---HHHHHHHHHHHHHHHHHHHHH
Confidence            333333444444444444455556777778888888888888887776665332 3   444445666777777777777


Q ss_pred             HHhHHHHHHHHHHHHHHHhhhHHHH
Q 005259          362 SEGNLASLQMNMESIMRNRELTETR  386 (705)
Q Consensus       362 ~K~rleele~E~~rl~e~l~~~eke  386 (705)
                      .......+....+.+.+.+.++.+.
T Consensus        95 eee~~~~L~~~kkkle~e~~~Lk~~  119 (129)
T 2fxo_A           95 EEEMNAELTAKKRKLEDECSELKRD  119 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777777777776666666555

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=93.90  E-value=4.7  Score=38.66  Aligned_cols=86  Identities=19%  Similarity=0.317  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 005259          295 LEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVES---NLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQM  371 (705)
Q Consensus       295 LEell~el~e~~~~L~~rl~~LQaeL~~EQ~~l~q~es---~~~ealsak~~eie~Le~rl~~Le~el~~~K~rleele~  371 (705)
                      +|.-|.+-.++......++..|+.+|...-..+..++-   .+..+...-...|..|..++..++..+......+.+++.
T Consensus        26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk  105 (155)
T 2efr_A           26 LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEK  105 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555555555556666666666666555555552   233333333444444444444444444444444444444


Q ss_pred             HHHHHHHHh
Q 005259          372 NMESIMRNR  380 (705)
Q Consensus       372 E~~rl~e~l  380 (705)
                      +++++-+.+
T Consensus       106 ~id~lEd~L  114 (155)
T 2efr_A          106 SIDDLEDEL  114 (155)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            444444333

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=93.07  E-value=5  Score=36.53  Aligned_cols=62  Identities=18%  Similarity=0.215  Sum_probs=44.5

Q ss_pred             hhHHHHHHHHHhhhhhcchHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 005259          251 DQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSV  322 (705)
Q Consensus       251 kQLee~n~~LrsE~eal~~ke~qLa~~~~RLrk~~~elks~~aqLEell~el~e~~~~L~~rl~~LQaeL~~  322 (705)
                      +.|-..+..|+.|++.          .+.++.....+..+.+..|+..+..+++....|...|..|+.....
T Consensus         6 rdL~~~~~~L~~E~e~----------~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDD   67 (111)
T 2v66_B            6 RDLQADNQRLKYEVEA----------LKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDD   67 (111)
T ss_dssp             HHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchH
Confidence            4566667777777775          6777777777777777777777777777777777777777766544

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=93.00  E-value=5.5  Score=36.67  Aligned_cols=59  Identities=24%  Similarity=0.371  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 005259          415 AAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDME  473 (705)
Q Consensus       415 ea~~Re~eLEee~~eLseALaelQrkLeEe~aea~eLeqQls~LE~elkqLkQeLq~lE  473 (705)
                      ++..+...|.....+|..-+..++..+++.-.....|...-.-++.++..++..|++++
T Consensus        66 e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e  124 (129)
T 2fxo_A           66 DAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLE  124 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555566666667777777777666666666666667777777777776655

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=92.45  E-value=0.7  Score=51.56  Aligned_cols=31  Identities=16%  Similarity=0.336  Sum_probs=12.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 005259          345 IETLVSSIDALKKQAALSEGNLASLQMNMES  375 (705)
Q Consensus       345 ie~Le~rl~~Le~el~~~K~rleele~E~~r  375 (705)
                      +..+...+..++++.......+...+.+++.
T Consensus       458 ~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~  488 (597)
T 3oja_B          458 VNELRAEVQQLTNEQIQQEQLLQGLHAEIDT  488 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            3334444444444444444444444444333

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=92.27  E-value=3  Score=46.43  Aligned_cols=21  Identities=5%  Similarity=-0.171  Sum_probs=7.9

Q ss_pred             HHHHhHHHHHHHHHHHHHHHh
Q 005259          360 ALSEGNLASLQMNMESIMRNR  380 (705)
Q Consensus       360 ~~~K~rleele~E~~rl~e~l  380 (705)
                      +..+.+.+..+.++.+..+..
T Consensus       512 ~~~~~~~~~~~~~~~~~~~~~  532 (597)
T 3oja_B          512 THLKERQAFKLRETQARRTEA  532 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhhhhHHHHHHHHHhh
Confidence            333333333333333333333

>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2

Probab=91.82  E-value=2.4  Score=38.66  Aligned_cols=94  Identities=14%  Similarity=0.184  Sum_probs=49.2

Q ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 005259          274 LARVCAGLSSRLQEYKSENAQLEELLVAEREL----SRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLV  349 (705)
Q Consensus       274 La~~~~RLrk~~~elks~~aqLEell~el~e~----~~~L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le  349 (705)
                      |+....+|++.+.........||+.+.+-.+-    ...|..++..-|+.|...|..+.+.++              +.+
T Consensus        11 lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~--------------~vq   76 (112)
T 1x79_B           11 LQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKR--------------DVQ   76 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHH
Confidence            34444555555555555556666655544443    456666778888888888888888877              344


Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q 005259          350 SSIDALKKQAALSEGNLASLQMNMESIMRNRE  381 (705)
Q Consensus       350 ~rl~~Le~el~~~K~rleele~E~~rl~e~l~  381 (705)
                      ..|..|...-+....++..++.+++.|..++.
T Consensus        77 ~qL~~Lt~~Re~V~~eL~rLQ~eNd~L~Gk~~  108 (112)
T 1x79_B           77 EQMAVLMQSREQVSEELVRLQKDNDSLQGKHS  108 (112)
T ss_dssp             HHHHHHHHHHHHHHTC----------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccchhhhhh
Confidence            45555666666777777788888877766543

>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=90.95  E-value=1.1  Score=42.02  Aligned_cols=87  Identities=16%  Similarity=0.230  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHH
Q 005259          309 YEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSI-DALKKQAALSEGNLASLQMNMESIMRNRELTETRM  387 (705)
Q Consensus       309 L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le~rl-~~Le~el~~~K~rleele~E~~rl~e~l~~~ekei  387 (705)
                      ....+..|..+|..++..+...+.    .....+.++++|-..+ ..++..+...+..-..++.-++.+...+.+.+.. 
T Consensus        44 ~~~e~~~L~~~l~eE~~~R~~aE~----~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~l-  118 (135)
T 2e7s_A           44 RDDEVKRLREDIAKENELRTKAEE----EADKLNKEVEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQLREKDML-  118 (135)
T ss_dssp             HHHHHHTHHHHHHHTTSHHHHHHH----TTHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTHHHHC-
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            334566666666666666555554    3334566677776665 6667777776666667777777777777776555 


Q ss_pred             HHHHHHHHHHHHH
Q 005259          388 IQALREELASVER  400 (705)
Q Consensus       388 lqSLE~eLkslq~  400 (705)
                      +.+++..|..|+.
T Consensus       119 l~~lq~QL~~LK~  131 (135)
T 2e7s_A          119 LDTLTLQLKNLKK  131 (135)
T ss_dssp             C------------
T ss_pred             HHHHHHHHHHHHH
Confidence            6666666665554

>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}

Probab=89.68  E-value=13  Score=34.72  Aligned_cols=46  Identities=13%  Similarity=0.220  Sum_probs=33.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 005259          428 AEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDME  473 (705)
Q Consensus       428 ~eLseALaelQrkLeEe~aea~eLeqQls~LE~elkqLkQeLq~lE  473 (705)
                      ..|.+.+-.+.+.|+.++.++.+.---+..|.++-+.++++|..+.
T Consensus       115 e~LT~TiG~LrKELEdEklK~~E~MdSFE~LkvENE~vkerl~mYR  160 (167)
T 4gkw_A          115 ESLTETIGILRKELENEKLKAAENMDSFEKLSMENENLKEKIAHYR  160 (167)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHH
Confidence            3455666778888888888777766667777888888888886543

>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=88.69  E-value=1.3  Score=41.68  Aligned_cols=108  Identities=14%  Similarity=0.195  Sum_probs=64.3

Q ss_pred             chHHHHHHHHHhhhhHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 005259          268 QSKEARLARVCAGLSSRLQEYKSENAQLEEL---LVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSE  344 (705)
Q Consensus       268 ~~ke~qLa~~~~RLrk~~~elks~~aqLEel---l~el~e~~~~L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~e  344 (705)
                      ..+..++..++..+.....++..-...+..+   +.+.+.+....+..+..++.+|...-.+++..-+.|...   ..-+
T Consensus        21 ~~~~~~le~l~~~l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~---ar~~   97 (135)
T 2e7s_A           21 KAAIENYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNLVAD---ARME   97 (135)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHH---TTHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence            4455556655555555444444333333333   333334566667788899999999999998888877744   4666


Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 005259          345 IETLVSSIDALKKQAALSEGNLASLQMNMESIMR  378 (705)
Q Consensus       345 ie~Le~rl~~Le~el~~~K~rleele~E~~rl~e  378 (705)
                      ...++.+...|+..+......++.++.++..|+.
T Consensus        98 ~~~~e~r~~~L~~ql~e~e~ll~~lq~QL~~LK~  131 (135)
T 2e7s_A           98 KYAIEILNKRLTEQLREKDMLLDTLTLQLKNLKK  131 (135)
T ss_dssp             HHHHHHHHHHHHHTTTHHHHCC------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6778888888888888888888888887766654

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=88.08  E-value=14  Score=32.78  Aligned_cols=15  Identities=33%  Similarity=0.415  Sum_probs=6.5

Q ss_pred             HHHHHHHHHHHHHHH
Q 005259          458 LEVECATLQQELQDM  472 (705)
Q Consensus       458 LE~elkqLkQeLq~l  472 (705)
                      .|.+...|..+++.+
T Consensus        84 aE~ev~~L~Rriqll   98 (101)
T 3u1c_A           84 AESEVASLNRRIQLV   98 (101)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            344444444444443

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=88.07  E-value=14  Score=32.89  Aligned_cols=66  Identities=12%  Similarity=0.149  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhH
Q 005259          389 QALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALA-RIQRIADERTAKAGELEQKVAML  458 (705)
Q Consensus       389 qSLE~eLkslq~~le~E~~aH~aTk~ea~~Re~eLEee~~eLseALa-elQrkLeEe~aea~eLeqQls~L  458 (705)
                      ...+.++..|+..+..|...    +..+......++.+...|+.+|- +..+++..++.....++.+...|
T Consensus        22 ~~~~~e~~~L~~~l~eE~~~----R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~kn~~L   88 (97)
T 2eqb_B           22 SDRDDEVKRLREDIAKENEL----RTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRL   88 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33455566777777666554    44555577777888888887773 34555555554444444444333

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=87.84  E-value=16  Score=33.27  Aligned_cols=29  Identities=7%  Similarity=0.067  Sum_probs=11.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 005259          346 ETLVSSIDALKKQAALSEGNLASLQMNME  374 (705)
Q Consensus       346 e~Le~rl~~Le~el~~~K~rleele~E~~  374 (705)
                      ..|+.++..+...-..++..+-+++..++
T Consensus        38 ~~Lq~El~~lr~~~~~l~~~iReLEq~ND   66 (111)
T 2v66_B           38 SVLEDDLSQTRAIKEQLHKYVRELEQAND   66 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence            33333333333333444444444444333

>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1

Probab=85.38  E-value=10  Score=35.94  Aligned_cols=8  Identities=25%  Similarity=0.318  Sum_probs=2.9

Q ss_pred             HHHHHHHH
Q 005259          313 IKQLEQEL  320 (705)
Q Consensus       313 l~~LQaeL  320 (705)
                      +..|+.+|
T Consensus        54 ~~~lE~qL   61 (147)
T 2b9c_A           54 MEIQEIQL   61 (147)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            33333333

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=84.64  E-value=11  Score=36.04  Aligned_cols=70  Identities=16%  Similarity=0.205  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 005259          309 YEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL  382 (705)
Q Consensus       309 L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~  382 (705)
                      +.+.+..|+.++...+..+.+++..+.    .|+..++.|.+++.+|+-++..+..++.+++.|++.|-++.=.
T Consensus        66 ~~~~I~~L~~El~~l~~ki~dLeeel~----eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~  135 (152)
T 3a7p_A           66 LLNTLAILQKELKSKEQEIRRLKEVIA----LKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLK  135 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344667777777777666666665333    4677888899999999999999999999999998777666544

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=83.52  E-value=17  Score=30.82  Aligned_cols=30  Identities=7%  Similarity=0.120  Sum_probs=11.5

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 005259          351 SIDALKKQAALSEGNLASLQMNMESIMRNR  380 (705)
Q Consensus       351 rl~~Le~el~~~K~rleele~E~~rl~e~l  380 (705)
                      +...++.++.....+...++.++..++.++
T Consensus        21 ~~~~~e~~l~~~e~~~~~~E~ev~~L~kKi   50 (81)
T 1ic2_A           21 RAEQAEADKKAAEERSKQLEDELVALQKKL   50 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            333333333333333333333333333333

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=83.47  E-value=23  Score=32.39  Aligned_cols=7  Identities=29%  Similarity=0.126  Sum_probs=2.6

Q ss_pred             HHHHHHH
Q 005259          401 RAEEERA  407 (705)
Q Consensus       401 ~le~E~~  407 (705)
                      +|+.|+.
T Consensus       114 ~Ld~EIa  120 (129)
T 3tnu_B          114 ALDVEIA  120 (129)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            3333333

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=83.41  E-value=23  Score=31.14  Aligned_cols=28  Identities=7%  Similarity=0.028  Sum_probs=11.0

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 005259          351 SIDALKKQAALSEGNLASLQMNMESIMR  378 (705)
Q Consensus       351 rl~~Le~el~~~K~rleele~E~~rl~e  378 (705)
                      .+..|..+......+.+.++..++.+-+
T Consensus        10 Km~~lk~e~e~a~d~ae~~e~~~k~~e~   37 (101)
T 3u59_A           10 KMQMLKLDKENAIDRAEQAEADKKQAED   37 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333334444444444333333

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=83.26  E-value=26  Score=32.06  Aligned_cols=22  Identities=14%  Similarity=0.137  Sum_probs=11.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 005259          388 IQALREELASVERRAEEERAAH  409 (705)
Q Consensus       388 lqSLE~eLkslq~~le~E~~aH  409 (705)
                      +..|+.+|..++..++.....|
T Consensus        84 i~~lE~eL~~~r~e~~~ql~EY  105 (129)
T 3tnu_B           84 LAELEEALQKAKQDMARLLREY  105 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhHHHHHHHHHHHHHHH
Confidence            4455555555555555544444

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=82.98  E-value=28  Score=32.54  Aligned_cols=18  Identities=22%  Similarity=0.506  Sum_probs=9.1

Q ss_pred             HHHHHHHhhhhHHHHHHH
Q 005259          272 ARLARVCAGLSSRLQEYK  289 (705)
Q Consensus       272 ~qLa~~~~RLrk~~~elk  289 (705)
                      .-|..++.-+.++..+++
T Consensus        28 e~L~~vA~~vd~km~ei~   45 (138)
T 3hnw_A           28 EYLQRVASYINNKITEFN   45 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            344455555555555554

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=82.97  E-value=25  Score=31.25  Aligned_cols=69  Identities=17%  Similarity=0.230  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 005259          310 EARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSI-DALKKQAALSEGNLASLQMNMESIMRNREL  382 (705)
Q Consensus       310 ~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le~rl-~~Le~el~~~K~rleele~E~~rl~e~l~~  382 (705)
                      ...+..|..+|..++..+...+.    .....+.++++|-..| ..++..+...+..-..++.-+++|...+.+
T Consensus        25 ~~e~~~L~~~l~eE~~~R~~aE~----~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~kn~~L~~qL~d   94 (97)
T 2eqb_B           25 DDEVKRLREDIAKENELRTKAEE----EADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLRE   94 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            33444555555555554444443    2334555555665554 555555555555555555555555544443

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=82.89  E-value=23  Score=32.55  Aligned_cols=9  Identities=44%  Similarity=0.475  Sum_probs=3.4

Q ss_pred             HHHHHHHHH
Q 005259          400 RRAEEERAA  408 (705)
Q Consensus       400 ~~le~E~~a  408 (705)
                      -+|+.|+..
T Consensus       115 l~Ld~EIat  123 (131)
T 3tnu_A          115 TRLEQEIAT  123 (131)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            333333333

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=81.58  E-value=24  Score=32.34  Aligned_cols=22  Identities=23%  Similarity=0.347  Sum_probs=10.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 005259          388 IQALREELASVERRAEEERAAH  409 (705)
Q Consensus       388 lqSLE~eLkslq~~le~E~~aH  409 (705)
                      +..|+.+|..++..++.....|
T Consensus        86 i~~lE~eL~~~r~em~~ql~EY  107 (131)
T 3tnu_A           86 IGSVEEQLAQLRCEMEQQNQEY  107 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            4444445555555554444443

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=81.58  E-value=14  Score=34.51  Aligned_cols=51  Identities=16%  Similarity=0.198  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 005259          347 TLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASV  398 (705)
Q Consensus       347 ~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~ekeilqSLE~eLksl  398 (705)
                      .|+..+..+..++..+|..+..++...+.+..++..+.++ +..|+.++..+
T Consensus        79 ~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~-~~~l~~~~~~l  129 (138)
T 3hnw_A           79 SLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSE-INKYQKNIVKL  129 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            3444444444444444444444444444444444444333 33344334433

>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2

Probab=81.22  E-value=21  Score=32.56  Aligned_cols=77  Identities=12%  Similarity=0.119  Sum_probs=52.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 005259          306 SRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNREL  382 (705)
Q Consensus       306 ~~~L~~rl~~LQaeL~~EQ~~l~q~es~~~ealsak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~  382 (705)
                      ...|+..+.+|..+|..+...+..++....+.-+.=..+++.|...++..+..+..+......++.+...-+..+..
T Consensus         8 ~~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~Lt~   84 (112)
T 1x79_B            8 VKKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQMAVLMQ   84 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566667777778888777777777766655555666777777777777777777777777666664444444333

>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1

Probab=80.63  E-value=35  Score=32.26  Aligned_cols=45  Identities=20%  Similarity=0.344  Sum_probs=23.0

Q ss_pred             hhhhhHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHH
Q 005259          512 NKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLL  557 (705)
Q Consensus       512 ~kl~s~E~elqkLr~e~~~~k~q~~els~q~~~elE~rl~eLtE~L  557 (705)
                      .++..++.++..+-..+..+.-+... .++....|+.+|+.|+++|
T Consensus       101 ~k~~eLEeeL~~~~~nlKsLE~~eek-as~rE~~yee~I~~L~~kL  145 (147)
T 2b9c_A          101 GKCAELEEELKTVTNNLKSLEDKVEE-LLSKNYHLENEVARLKKLV  145 (147)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTTT-HHHHHHHHHHHHTTSCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHhHHH-HHHHHHHHHHHHHHHHHHh
Confidence            33334444444444444333322211 2455678888888887655

>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}

Probab=80.56  E-value=19  Score=30.35  Aligned_cols=47  Identities=6%  Similarity=0.120  Sum_probs=31.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHH
Q 005259          340 AKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETR  386 (705)
Q Consensus       340 ak~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~l~~~eke  386 (705)
                      ..+....+|++++..++..+...+.+-..+..+..++++-+.-+-.+
T Consensus        11 ~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~e   57 (72)
T 3cve_A           11 EVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFE   57 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            34445556777777777777777777777777777776665555444

>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A

Probab=80.52  E-value=20  Score=31.36  Aligned_cols=65  Identities=14%  Similarity=0.092  Sum_probs=36.8

Q ss_pred             hhHHHHHHHHHHHHHHhhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005259          515 SSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEM  582 (705)
Q Consensus       515 ~s~E~elqkLr~e~~~~k~q~~els~q~~~elE~rl~eLtE~L~eKQ~qlE~L~~Er~sL~~qLE~~~  582 (705)
                      ..+|.+...|..+|....++-   ++.....|+.-|..|+.++..-...-..+..|+..|...++++.
T Consensus        26 R~LEqqN~~Le~~i~~l~~~~---~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k   90 (93)
T 3s4r_A           26 RFLEQQNKILLAELEQLKGQG---KSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLR   90 (93)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhcc---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346666666666665544321   23345667888887776666555555555555555555544433

>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A

Probab=80.07  E-value=30  Score=30.23  Aligned_cols=38  Identities=18%  Similarity=0.247  Sum_probs=22.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 005259          342 NSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRN  379 (705)
Q Consensus       342 ~~eie~Le~rl~~Le~el~~~K~rleele~E~~rl~e~  379 (705)
                      ..+|.+|...+..+..+-..+...+..++.+...++.+
T Consensus        55 e~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~K   92 (93)
T 3s4r_A           55 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREK   92 (93)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            45566666666666666666666666666655555443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00