Citrus Sinensis ID: 005282

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700----
Protein Sequence
MDRRERQTSPARRSLKRKLEQDFEEKPDRKVSIVESGATQQDLVQDIRAQIDILNSKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPDDCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLATKATSLSPMDAAPPSPTQQVYLGEQFVNNPTLSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFIYTGNVDVSVDIAQDLLRAADQYLLEGLKRLCEYSIAQIISVENIMLMYELSEAYNATTLKQSCILFILEKFDKMRNKPWFFRLIRCVLPEIRNYFTKAFSNPVIVNSSQL
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHHHHHHHcccccHHHHHcccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccccHHHHHcccccHHHHHHcccccccccccccccHHHHHHHHHHHHcccccccHHHHHHHcccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHcccccccHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHccccccHHHHHHHHcccHHHHHHccccccHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHHHccccHHHHHccccccHHHHHHHHHHHHHHccccccHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHcccccccHHHHHccHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccccccccccccHHHcccccccccccccEEEEEcccEEHHHHHHHHHccHHHHHHHcccccccccccEEcccccHHHHHHHHHHHHccccccHHHHHHHHHHHHcHHcHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHcccHHcccHHHHHHHHccccccHHHEEHHccccccHHHHcccccccHHHHHHHHHHHHHcccccccEEEEcccHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHccccHHHHHHHcccccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHccccHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHccHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHcccccHHHHHHHccccHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHccccHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccccccccccccHEHHHHHHccccccccEEEEEcccEEEHHHHHHHHcHHHHHHHHccccccccccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHcHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccccccccccc
Coil and Loop (DISEMBL)
mdrrerqtspaRRSLKRKLEQdfeekpdrkvsiVESGATQQDLVQDIRAQIDILnskfssdeTDRAAAKTASHALVEFAKNEEIVSLIVDngavpalvehlqtppqltnaqipyeHEVEKECAFALGllavkpehqqiivdtgALPHLVSLLKQYknggnsraLSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGnlvhsspsikKEVILAGALQPVIGLLSSSCSESKREAALLLGQFaaadsnskvhivqrgavrpliemlqspdsqLKEMSAFALGRLAqdthnqagiaqdggilPLLKlldskngslqhNAAFALygladnednVADLVRVGgvqklqdgeftvqptKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHlcapddcktifidNNGLELLLGLLESTSVKQREESSVALYKLATKatslspmdaappsptqqvylgeqfvnnptlsdvtfVVEGKQFYAHRICLLASSDAFRAMFdggykeknakdveipniRWNVFELMMRFIYTGNVDVSVDIAQDLLRAADQYLLEGLKRLCEYSIAQIISVENIMLMYELSEAYNATTLKQSCILFILEKFdkmrnkpwFFRLIRCVLPEIRNYFtkafsnpvivnssql
Flexible Loop (DISEMBL)
mdrrerqtsparrslkrkleqdfeekpdrkvsivesgatqqdlVQDIRAQIDILNSKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNlahenaniktrvrvEDGIPPLVELLKFVDVKVQRAAAGALrtlafkndenkkLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQfaaadsnskvhIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADLVRVGGVQklqdgeftvqptkDCVARTLKRleekvhgrvlnhLLYLLRVADRAVKRRVTLALAhlcapddckTIFIDNNGLELLLGLLESTSVKQREESSVALYKLATKATSLSPMDAAPPSPTQQVYLGEQFVNNPTLSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGykeknakdveipnIRWNVFELMMRFIYTGNVDVSVDIAQDLLRAADQYLLEGLKRLCEYSIAQIISVENIMLMYELSEAYNATTLKQSCILFILEKFDKMRNKPWFFRLIRCVLPEIRNYftkafsnpvivnssql
Low Complexity Region (SEG)
MDRRERQTSPARRSLKRKLEQDFEEKPDRKVSIVESGATQQDLVQDIRAQIDILNSKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPDDCKTIFIDnnglelllglleSTSVKQREESSVALYKLATKATSLSPMDAAPPSPTQQVYLGEQFVNNPTLSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFIYTGNVDVSVDIAQDLLRAADQYLLEGLKRLCEYSIAQIISVENIMLMYELSEAYNATTLKQSCILFILEKFDKMRNKPWFFRLIRCVLPEIRNYFTKAFSNPVIVNSSQL
Disordered region (IsUnstruct)
********************************************QDIRAQIDIL******************HALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSC*****EAALLLGQFAAADSNSKVHIVQRGAVRPLIEM*************FALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPDDCKTIFIDNNGLELLLGLLES*************Y**********************VYLGEQFVNNPTLSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFIYTGNVDVSVDIAQDLLRAADQYLLEGLKRLCEYSIAQIISVENIMLMYELSEAYNATTLKQSCILFILEKFDKMRNKPWFFRLIRCVLPEIRNYFTKAFSNPVIV*****
Disordered Region (DISOPRED)
*****************************************DLVQDIRAQIDILNSKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPDDCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLATKATSLSPMDAAPPSPTQQVYLGEQFVNNPTLSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKE*NAKDVEIPNIRWNVFELMMRFIYTGNVDVSVDIAQDLLRAADQYLLEGLKRLCEYSIAQIISVENIMLMYELSEAYNATTLKQSCILFILEKFDKMRNKPWFFRLIRCVLPEIRNYFTKAFS**********
Disordered Region (DISEMBL)
******************************VSIVESGATQQDLVQDIRAQIDILNSKFS************SHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPDDCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLATKATSLSPMDAAPPSPTQQVYLGEQFVNNPTLSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFIYTGNVDVSVDIAQDLLRAADQYLLEGLKRLCEYSIAQIISVENIMLMYELSEAYNATTLKQSCILFILEKFDKMRNKPWFFRLIRCVLPEIRNYFTKAFSNPVIVNSSQL
Disordered Region (DISPRO)
MDRRERQTSPARRSLKRKLEQDFEEKPDRKVSIVESGATQQDLVQDIRAQIDILNSKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPDDCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLATKATSLSPMDAAPPSPTQQVYLGEQFVNNPTLSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFIYTGNVDVSVDIAQDLLRAADQYLLEGLKRLCEYSIAQIISVENIMLMYELSEAYNATTLKQSCILFILEKFDKMRNKPWFFRLIRCVLPEIRNYFTKAFSN*********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDRRERQTSPARRSLKRKLEQDFEEKPDRKVSIVESGATQQDLVQDIRAQIDILNSKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPDDCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLATKATSLSPMDAAPPSPTQQVYLGEQFVNNPTLSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFIYTGNVDVSVDIAQDLLRAADQYLLEGLKRLCEYSIAQIISVENIMLMYELSEAYNATTLKQSCILFILEKFDKMRNKPWFFRLIRCVLPEIRNYFTKAFSNPVIVNSSQL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	704	2.2.26 [Sep-21-2011]
B9DHT4	710	ARM REPEAT PROTEIN INTERA	yes	no	0.982	0.974	0.716	0.0
B7U179	737	ARMADILLO BTB ARABIDOPSIS	no	no	0.985	0.941	0.616	0.0
P0CM60	630	Vacuolar protein 8 OS=Cry	yes	no	0.532	0.595	0.274	2e-21
P0CM61	630	Vacuolar protein 8 OS=Cry	N/A	no	0.532	0.595	0.274	2e-21
Q7TQI7	1024	Ankyrin repeat and BTB/PO	yes	no	0.278	0.191	0.314	2e-21
O08764	1009	Ankyrin repeat and BTB/PO	yes	no	0.264	0.184	0.320	2e-21
Q8N961	839	Ankyrin repeat and BTB/PO	yes	no	0.278	0.233	0.305	2e-20
Q2U5T5	578	Vacuolar protein 8 OS=Asp	yes	no	0.538	0.655	0.273	3e-19
Q4WVW4	578	Vacuolar protein 8 OS=Neo	yes	no	0.538	0.655	0.276	4e-19
Q6IQ16	392	Speckle-type POZ protein-	no	no	0.184	0.331	0.407	7e-18

>sp|B9DHT4|ARIA_ARATH ARM REPEAT PROTEIN INTERACTING WITH ABF2 OS=Arabidopsis thaliana GN=ARIA PE=1 SV=2

 Score = 1001 bits (2588), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/695 (71%), Positives = 600/695 (86%), Gaps = 3/695 (0%)

Query: 2   DRRERQTSPARRSLKRKLEQDFEEKPDRKVSIVESGATQQDLVQDIRAQIDILNSKFSSD 61
           +RRE ++ P R+  KRKLE+      DR++S V +   Q  L+ ++ AQ+ +LNS FS  
Sbjct: 6   ERREGRSFPERKGQKRKLEEGAAAVEDREISAVSTDGGQA-LLSEVAAQVSVLNSAFSWQ 64

Query: 62  ETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTN--AQIPYEHEVE 119
           E+DRAAAK A+  L E AKNE++V++IVD GAVPAL+ HLQ PP      A+ PYEHEVE
Sbjct: 65  ESDRAAAKRATQVLAELAKNEDLVNVIVDGGAVPALMTHLQAPPYNDGDLAEKPYEHEVE 124

Query: 120 KECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLA 179
           K  AFALGLLA+KPE+Q++IVD GALPHLV+LLK+ K+G +SRA++ VIRRAADAITNLA
Sbjct: 125 KGSAFALGLLAIKPEYQKLIVDKGALPHLVNLLKRNKDGSSSRAVNSVIRRAADAITNLA 184

Query: 180 HENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPT 239
           HEN++IKTRVRVE GIPPLVELL+F D KVQRAAAGALRTLAFKND+NK  IVECNALPT
Sbjct: 185 HENSSIKTRVRVEGGIPPLVELLEFSDSKVQRAAAGALRTLAFKNDDNKNQIVECNALPT 244

Query: 240 LVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAAL 299
           L+LML SEDA++H+EAVGVIGNLVHSSP IKKEV+ AGALQPVIGLLSS C ES+REAAL
Sbjct: 245 LILMLGSEDAAIHYEAVGVIGNLVHSSPHIKKEVLTAGALQPVIGLLSSCCPESQREAAL 304

Query: 300 LLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQD 359
           LLGQFA+ DS+ KVHIVQRGAVRPLIEMLQSPD QLKEMSAFALGRLAQD HNQAGIA  
Sbjct: 305 LLGQFASTDSDCKVHIVQRGAVRPLIEMLQSPDVQLKEMSAFALGRLAQDAHNQAGIAHS 364

Query: 360 GGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDC 419
           GG+ PLLKLLDS+NGSLQHNAAFALYGLADNEDNV+D +RVGG+QKLQDGEF VQ TKDC
Sbjct: 365 GGLGPLLKLLDSRNGSLQHNAAFALYGLADNEDNVSDFIRVGGIQKLQDGEFIVQATKDC 424

Query: 420 VARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPDDCKTIFIDNNGLEL 479
           V++TLKRLEEK+HGRVL HLLYL+R+++++++RRV LALAHLC+P+D +TIFID+NGLEL
Sbjct: 425 VSKTLKRLEEKIHGRVLRHLLYLMRISEKSIQRRVALALAHLCSPEDQRTIFIDDNGLEL 484

Query: 480 LLGLLESTSVKQREESSVALYKLATKATSLSPMDAAPPSPTQQVYLGEQFVNNPTLSDVT 539
           LLGLL S + KQ+ + + ALYKLA K+ +LSP+DAAPPSPTQ+VYLGEQ+VNN TLSDVT
Sbjct: 485 LLGLLGSLNTKQQLDGAAALYKLANKSMALSPVDAAPPSPTQRVYLGEQYVNNATLSDVT 544

Query: 540 FVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFIYTGNV 599
           F+VEG+ FYAHRICLLASSDAFRAMFDGGY+EK+A+D+EIPNI+W VFELMMRFIYTG+V
Sbjct: 545 FLVEGRTFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIKWEVFELMMRFIYTGSV 604

Query: 600 DVSVDIAQDLLRAADQYLLEGLKRLCEYSIAQIISVENIMLMYELSEAYNATTLKQSCIL 659
           D++ +I++DLLRAADQYLLEGLKRLCEY+IAQ I++E+I  MYELSEA++A +L+Q+CI+
Sbjct: 605 DITNEISKDLLRAADQYLLEGLKRLCEYTIAQDITLESIGDMYELSEAFHAMSLRQACIM 664

Query: 660 FILEKFDKMRNKPWFFRLIRCVLPEIRNYFTKAFS 694
           FILE FDK+ + PW   L++  +PEIR YF +A +
Sbjct: 665 FILEHFDKLSSMPWQNELVQRTIPEIREYFCRALT 699

May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). Acts as a positive regulator of ABA response via the modulation of the transcriptional activity of ABF2, a transcription factor which controls ABA-dependent gene expression via the G-box-type ABA-responsive elements. Negative regulator of seed germination and young seedling growth.
Arabidopsis thaliana (taxid: 3702)

>sp|B7U179|ABAP1_ARATH ARMADILLO BTB ARABIDOPSIS PROTEIN 1 OS=Arabidopsis thaliana GN=ABAP1 PE=1 SV=1

 Score =  873 bits (2255), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/697 (61%), Positives = 544/697 (78%), Gaps = 3/697 (0%)

Query: 3   RRERQTSPARRSLKRKLEQDFEEKPDRKVSIVESGATQQDLVQDIRAQIDILNSKFSSDE 62
           +R+R T  A R+LKRKL  + +  P     +++      DLV  IR  +++LNS FS  +
Sbjct: 34  KRQRTTRLAARNLKRKLSHNTDGAP-IVTQLIDIDDEPIDLVVAIRRHVEVLNSSFSDPD 92

Query: 63  TDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLT-NAQIPYEHEVEKE 121
            D  A K A+  + + AK +E V +IV+NGA+PALV +L++P  +  N     EH++EK+
Sbjct: 93  FDHEAVKEAAADIADLAKIDENVEIIVENGAIPALVRYLESPLVVCGNVPKSCEHKLEKD 152

Query: 122 CAFALGLLA-VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAH 180
           CA ALGL+A ++P +QQ+IVD GA+   V LLK+    G     + VIRRAAD ITN+AH
Sbjct: 153 CALALGLIAAIQPGYQQLIVDAGAIVPTVKLLKRRGECGECMFANAVIRRAADIITNIAH 212

Query: 181 ENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTL 240
           +N  IKT +RVE GI PLVELL F DVKVQRAAAGALRT++F+NDENK  IVE NALPTL
Sbjct: 213 DNPRIKTNIRVEGGIAPLVELLNFPDVKVQRAAAGALRTVSFRNDENKSQIVELNALPTL 272

Query: 241 VLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALL 300
           VLML+S+D++VH EA+G IGNLVHSSP IKKEVI AGALQPVIGLLSS+C E++REAALL
Sbjct: 273 VLMLQSQDSTVHGEAIGAIGNLVHSSPDIKKEVIRAGALQPVIGLLSSTCLETQREAALL 332

Query: 301 LGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDG 360
           +GQFAA DS+ KVHI QRGA+ PLI+ML+S D Q+ EMSAFALGRLAQD HNQAGIA  G
Sbjct: 333 IGQFAAPDSDCKVHIAQRGAITPLIKMLESSDEQVVEMSAFALGRLAQDAHNQAGIAHRG 392

Query: 361 GILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCV 420
           GI+ LL LLD K GS+QHNAAFALYGLADNE+NVAD ++ GG+QKLQD  FTVQPT+DCV
Sbjct: 393 GIISLLNLLDVKTGSVQHNAAFALYGLADNEENVADFIKAGGIQKLQDDNFTVQPTRDCV 452

Query: 421 ARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPDDCKTIFIDNNGLELL 480
            RTLKRL+ K+HG VLN LLYL+R A++ V+ R+ LALAHLC P D K IFIDNNG+E L
Sbjct: 453 VRTLKRLQNKIHGPVLNQLLYLMRTAEKTVQIRIALALAHLCDPKDGKLIFIDNNGVEFL 512

Query: 481 LGLLESTSVKQREESSVALYKLATKATSLSPMDAAPPSPTQQVYLGEQFVNNPTLSDVTF 540
           L LL  +S KQ+  SS ALY+LA KATS +P D+AP SPTQQV+LGE+FVNNPT+SDVTF
Sbjct: 513 LELLYFSSNKQQRYSSSALYELAKKATSFAPEDSAPCSPTQQVFLGEKFVNNPTMSDVTF 572

Query: 541 VVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFIYTGNVD 600
           +++GKQFYAH+I L+ASSD FRAMFDG YKE+NA++VEIPNIRW VFELMM+FIY+G ++
Sbjct: 573 LIDGKQFYAHKIGLVASSDIFRAMFDGLYKERNAQNVEIPNIRWEVFELMMKFIYSGRIN 632

Query: 601 VSVDIAQDLLRAADQYLLEGLKRLCEYSIAQIISVENIMLMYELSEAYNATTLKQSCILF 660
           ++  +A+DLL AADQYLLEGLKR CEY+IAQ I ++NI  MYEL++ +NA+ L+++C LF
Sbjct: 633 IAKHLAKDLLVAADQYLLEGLKRQCEYTIAQEICLDNIPEMYELADTFNASALRRACTLF 692

Query: 661 ILEKFDKMRNKPWFFRLIRCVLPEIRNYFTKAFSNPV 697
           +LE F K+ ++ WF + ++ ++PEIR+Y T   + PV
Sbjct: 693 VLEHFTKLSSQLWFAKFVKQIIPEIRSYMTDILTRPV 729

May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). In association with TCP24, exerts a negative role in cell proliferation in leaves, possibly by inhibiting mitotic DNA replication.

Arabidopsis thaliana (taxid: 3702)

>sp|P0CM60|VAC8_CRYNJ Vacuolar protein 8 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=VAC8 PE=3 SV=1

 Score =  105 bits (261), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 120/437 (27%), Positives = 203/437 (46%), Gaps = 62/437 (14%)

Query: 114 YEHEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIR---R 170
           ++ EV++  + ALG LAV  E++ ++V  G L  L+  +           LS  +     
Sbjct: 98  HDPEVQRAASAALGNLAVNAENKLLVVSLGGLEPLIRQM-----------LSPNVEVQCN 146

Query: 171 AADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKL 230
           A   ITNLA  + N KT++     + PL  L K  D++VQR A GAL  +   +DEN++ 
Sbjct: 147 AVGCITNLATHDEN-KTQIAKSGALVPLTRLAKSKDMRVQRNATGALLNMTH-SDENRQQ 204

Query: 231 IVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGA----LQPVIGLL 286
           +V   A+P LV +L S D  V +     + N+   + + KK   LA +    +Q ++ L+
Sbjct: 205 LVAAGAIPVLVSLLNSPDTDVQYYCTTALSNIAVDAANRKK---LAQSEPKLVQSLVQLM 261

Query: 287 SSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRL 346
            S   + + +AAL L    A+DS  ++ IV+ G ++PL+ +L S    L   +A  +  +
Sbjct: 262 DSQSLKVQCQAALALRNL-ASDSKYQLEIVKFGGLKPLLRLLHSSYLPLILSAAACVRNV 320

Query: 347 AQDTHNQAGIAQDGGILPLLKLLD-SKNGSLQHNAAFALYGL-ADNEDNVADLVRVGGVQ 404
           +    N++ I + G + PL++LL   +N  +Q +A   L  L A +E N   +V  G V+
Sbjct: 321 SIHPANESPIIESGFLQPLIELLSFDENEEVQCHAISTLRNLAASSEKNKGAIVEAGAVE 380

Query: 405 KLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAP 464
           K++    TV                                   AV+  +T  +A L   
Sbjct: 381 KIKSLVLTV---------------------------------PLAVQSEMTACVAVLALS 407

Query: 465 DDCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLATKATS-LSPMDAAPPSPTQQV 523
           DD K   ++    E+L+ L  S SV+ +  S+ AL  L++KA    +P +A    P   +
Sbjct: 408 DDLKPQLLEMGICEVLIPLTNSPSVEVQGNSAAALGNLSSKAAEDYAPFNAVWNKPDGGL 467

Query: 524 YLGEQFVNNPTLSDVTF 540
           +     V   + +D+TF
Sbjct: 468 H--AYLVRFLSSADITF 482

Functions in both vacuole inheritance and protein targeting from the cytoplasm to vacuole.

Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684)

>sp|P0CM61|VAC8_CRYNB Vacuolar protein 8 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=VAC8 PE=3 SV=1

 Score =  105 bits (261), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 120/437 (27%), Positives = 203/437 (46%), Gaps = 62/437 (14%)

Query: 114 YEHEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIR---R 170
           ++ EV++  + ALG LAV  E++ ++V  G L  L+  +           LS  +     
Sbjct: 98  HDPEVQRAASAALGNLAVNAENKLLVVSLGGLEPLIRQM-----------LSPNVEVQCN 146

Query: 171 AADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKL 230
           A   ITNLA  + N KT++     + PL  L K  D++VQR A GAL  +   +DEN++ 
Sbjct: 147 AVGCITNLATHDEN-KTQIAKSGALVPLTRLAKSKDMRVQRNATGALLNMTH-SDENRQQ 204

Query: 231 IVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGA----LQPVIGLL 286
           +V   A+P LV +L S D  V +     + N+   + + KK   LA +    +Q ++ L+
Sbjct: 205 LVAAGAIPVLVSLLNSPDTDVQYYCTTALSNIAVDAANRKK---LAQSEPKLVQSLVQLM 261

Query: 287 SSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRL 346
            S   + + +AAL L    A+DS  ++ IV+ G ++PL+ +L S    L   +A  +  +
Sbjct: 262 DSQSLKVQCQAALALRNL-ASDSKYQLEIVKFGGLKPLLRLLHSSYLPLILSAAACVRNV 320

Query: 347 AQDTHNQAGIAQDGGILPLLKLLD-SKNGSLQHNAAFALYGL-ADNEDNVADLVRVGGVQ 404
           +    N++ I + G + PL++LL   +N  +Q +A   L  L A +E N   +V  G V+
Sbjct: 321 SIHPANESPIIESGFLQPLIELLSFDENEEVQCHAISTLRNLAASSEKNKGAIVEAGAVE 380

Query: 405 KLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAP 464
           K++    TV                                   AV+  +T  +A L   
Sbjct: 381 KIKSLVLTV---------------------------------PLAVQSEMTACVAVLALS 407

Query: 465 DDCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLATKATS-LSPMDAAPPSPTQQV 523
           DD K   ++    E+L+ L  S SV+ +  S+ AL  L++KA    +P +A    P   +
Sbjct: 408 DDLKPQLLEMGICEVLIPLTNSPSVEVQGNSAAALGNLSSKAAEDYAPFNAVWNKPDGGL 467

Query: 524 YLGEQFVNNPTLSDVTF 540
           +     V   + +D+TF
Sbjct: 468 H--AYLVRFLSSADITF 482

Functions in both vacuole inheritance and protein targeting from the cytoplasm to vacuole.

Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (taxid: 283643)

>sp|Q7TQI7|ABTB2_MOUSE Ankyrin repeat and BTB/POZ domain-containing protein 2 OS=Mus musculus GN=Abtb2 PE=2 SV=1

 Score =  105 bits (261), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 67/213 (31%), Positives = 121/213 (56%), Gaps = 17/213 (7%)

Query: 476 GLELLLGLLEST---SVKQREESSVALYKLATKATSLSPMDAAPP-SPTQQVYLGEQFVN 531
           GL+L+  +L+++   SV Q+      L  + T     SP+ + P    T    L   F+N
Sbjct: 786 GLQLMFDILKTSKNDSVLQQ------LATIFTHCYGTSPIPSIPEIRKTLPARLDPHFLN 839

Query: 532 NPTLSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKE--KNAKDVEIPNIRWNVFEL 589
           N  +SDVTF+VEGK FYAH++ L+ +S+ F+ +     ++   ++K +EI +I++++F++
Sbjct: 840 NKEMSDVTFLVEGKLFYAHKVLLVTASNRFKTLMTNKSEQDGDSSKTIEISDIKYHIFQM 899

Query: 590 MMRFIYTGNVDV----SVDIAQDLLRAADQYLLEGLKRLCEYSIAQIISVENIMLMYELS 645
           +M+++Y G  +     + DI Q LL AA+ + L+ L+R CE   +Q +SVE+ +  Y+ +
Sbjct: 900 LMQYLYYGGTESMEIPTADILQ-LLSAANLFQLDALQRHCEILCSQTLSVESAVNTYKYA 958

Query: 646 EAYNATTLKQSCILFILEKFDKMRNKPWFFRLI 678
           + +NA  L   C  F L+    +  +  F +LI
Sbjct: 959 KIHNAPELALFCEGFFLKHMKALLEQDAFRQLI 991

May be involved in the initiation of hepatocyte growth.

Mus musculus (taxid: 10090)

>sp|O08764|ABTB2_RAT Ankyrin repeat and BTB/POZ domain-containing protein 2 OS=Rattus norvegicus GN=Abtb2 PE=2 SV=1

 Score =  104 bits (260), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/203 (32%), Positives = 116/203 (57%), Gaps = 17/203 (8%)

Query: 476 GLELLLGLLEST---SVKQREESSVALYKLATKATSLSPMDAAPP-SPTQQVYLGEQFVN 531
           GL+L+  +L+++   SV Q+      L  + T     SP+ + P    T    L   F+N
Sbjct: 785 GLQLMFDILKTSKNDSVLQQ------LATIFTHCYGTSPIPSIPEIRKTLPARLDPHFLN 838

Query: 532 NPTLSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKE--KNAKDVEIPNIRWNVFEL 589
           N  +SDVTF+VEGK FYAH++ L+ +S+ F+ +     ++   N+K +EI +I++++F++
Sbjct: 839 NKEMSDVTFLVEGKLFYAHKVLLVTASNRFKTLMTNKSEQDGDNSKTIEISDIKYHIFQM 898

Query: 590 MMRFIYTGNVDV----SVDIAQDLLRAADQYLLEGLKRLCEYSIAQIISVENIMLMYELS 645
           +M+++Y G  +     + DI Q LL AA+ + L+ L+R CE   +Q +SVE+ +  Y+ +
Sbjct: 899 LMQYLYYGGTESMEIPTADILQ-LLSAANLFQLDALQRHCEILCSQTLSVESAVNTYKYA 957

Query: 646 EAYNATTLKQSCILFILEKFDKM 668
           + +NA  L   C  F L+    +
Sbjct: 958 KIHNAPELALFCEGFFLKHMKAL 980

May be involved in the initiation of hepatocyte growth.

Rattus norvegicus (taxid: 10116)

>sp|Q8N961|ABTB2_HUMAN Ankyrin repeat and BTB/POZ domain-containing protein 2 OS=Homo sapiens GN=ABTB2 PE=2 SV=1

 Score =  102 bits (253), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 65/213 (30%), Positives = 121/213 (56%), Gaps = 17/213 (7%)

Query: 476 GLELLLGLLEST---SVKQREESSVALYKLATKATSLSPMDAAPP-SPTQQVYLGEQFVN 531
           GL+L+  +L+++   SV Q+      L  + T     SP+ + P    T    L   F+N
Sbjct: 601 GLQLMFDILKTSKNDSVIQQ------LATIFTHCYGSSPIPSIPEIRKTLPARLDPHFLN 654

Query: 532 NPTLSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKE--KNAKDVEIPNIRWNVFEL 589
           N  +SDVTF+VEGK FYAH++ L+ +S+ F+ +     ++   ++K +EI ++++++F++
Sbjct: 655 NKEMSDVTFLVEGKLFYAHKVLLVTASNRFKTLMTNKSEQDGDSSKTIEISDMKYHIFQM 714

Query: 590 MMRFIYTGNVDVSVDIAQ----DLLRAADQYLLEGLKRLCEYSIAQIISVENIMLMYELS 645
           MM+++Y G  + S++I      +LL AA  + L+ L+R CE   +Q +S+E+ +  Y+ +
Sbjct: 715 MMQYLYYGGTE-SMEIPTTDILELLSAASLFQLDALQRHCEILCSQTLSMESAVNTYKYA 773

Query: 646 EAYNATTLKQSCILFILEKFDKMRNKPWFFRLI 678
           + +NA  L   C  F L+    +  +  F +LI
Sbjct: 774 KIHNAPELALFCEGFFLKHMKALLEQDAFRQLI 806

May be involved in the initiation of hepatocyte growth.

Homo sapiens (taxid: 9606)

>sp|Q2U5T5|VAC8_ASPOR Vacuolar protein 8 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=vac8 PE=3 SV=1

 Score = 97.4 bits (241), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 118/431 (27%), Positives = 199/431 (46%), Gaps = 52/431 (12%)

Query: 117 EVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAIT 176
           EV++  + ALG LAV  +++ +IV   AL  L  L++Q  +         V   A   IT
Sbjct: 121 EVQRAASAALGNLAVNADNKVLIV---ALGGLAPLIRQMMSPNVE-----VQCNAVGCIT 172

Query: 177 NLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNA 236
           NLA    N K ++     + PL+ L K  D++VQR A GAL  +   +D+N++ +V   A
Sbjct: 173 NLATHEDN-KAKIARSGALGPLIRLAKSKDMRVQRNATGALLNMT-HSDDNRQQLVNAGA 230

Query: 237 LPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGAL-QPVIGLLSSSCSESKR 295
           +P LV +L S D  V +     + N+   + + K+       L Q ++ L+ SS  + + 
Sbjct: 231 IPVLVQLLSSSDVDVQYYCTTALSNIAVDASNRKRLAQTESRLVQSLVHLMDSSTPKVQC 290

Query: 296 EAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAG 355
           +AAL L    A+D   ++ IV+   + PL+ +LQS    L   +   +  ++    N++ 
Sbjct: 291 QAALALRNL-ASDEKYQLEIVRAKGLPPLLRLLQSSYLPLILSAVACIRNISIHPLNESP 349

Query: 356 IAQDGGILPLLKLLDSK-NGSLQHNAAFALYGLADNEDNVADLV-RVGGVQKLQDGEFTV 413
           I   G + PL+ LL S  N  +Q +A   L  LA + D   +LV + G VQK +D     
Sbjct: 350 IIDAGFLKPLVDLLGSTDNEEIQCHAISTLRNLAASSDRNKELVLQAGAVQKCKD----- 404

Query: 414 QPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPDDCKTIFID 473
                                       +L+V   +V+  +T A+A L   D+ K   ++
Sbjct: 405 ---------------------------LVLKVP-LSVQSEMTAAIAVLALSDELKPHLLN 436

Query: 474 NNGLELLLGLLESTSVKQREESSVALYKLATKATSLSPM--DAAPPSPTQQVYLGEQFV- 530
               ++L+ L ES S++ +  S+ AL  L++K    S    D A P+     YL ++F+ 
Sbjct: 437 LGVFDVLIPLTESESIEVQGNSAAALGNLSSKVGDYSIFVRDWADPNGGIHGYL-KRFLA 495

Query: 531 -NNPTLSDVTF 540
             +PT   +  
Sbjct: 496 SGDPTFQHIAI 506

Functions in both vacuole inheritance and protein targeting from the cytoplasm to vacuole.

Aspergillus oryzae (strain ATCC 42149 / RIB 40) (taxid: 510516)

>sp|Q4WVW4|VAC8_ASPFU Vacuolar protein 8 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=vac8 PE=3 SV=1

 Score = 97.1 bits (240), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 119/431 (27%), Positives = 198/431 (45%), Gaps = 52/431 (12%)

Query: 117 EVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAIT 176
           EV++  + ALG LAV  E++ +IV   AL  L  L++Q  +         V   A   IT
Sbjct: 121 EVQRAASAALGNLAVNAENKVLIV---ALGGLTPLIRQMMSPNVE-----VQCNAVGCIT 172

Query: 177 NLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNA 236
           NLA    N K ++     + PL+ L K  D++VQR A GAL  +   +D+N++ +V   A
Sbjct: 173 NLATHEDN-KAKIARSGALGPLIRLAKSKDMRVQRNATGALLNMTH-SDDNRQQLVNAGA 230

Query: 237 LPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGAL-QPVIGLLSSSCSESKR 295
           +P LV +L S D  V +     + N+   + + K+       L Q ++ L+ SS  + + 
Sbjct: 231 IPVLVQLLSSPDVDVQYYCTTALSNIAVDASNRKRLAQTESRLVQSLVHLMDSSTPKVQC 290

Query: 296 EAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAG 355
           +AAL L    A+D   ++ IV+   + PL+ +LQS    L   +   +  ++    N++ 
Sbjct: 291 QAALALRNL-ASDEKYQLEIVRAKGLPPLLRLLQSSYLPLILSAVACIRNISIHPLNESP 349

Query: 356 IAQDGGILPLLKLLDSK-NGSLQHNAAFALYGLADNEDNVADLV-RVGGVQKLQDGEFTV 413
           I   G + PL+ LL S  N  +Q +A   L  LA + D   +LV + G VQK +D     
Sbjct: 350 IIDAGFLKPLVDLLGSTDNEEIQCHAISTLRNLAASSDRNKELVLQAGAVQKCKD----- 404

Query: 414 QPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPDDCKTIFID 473
                                       +LRV   +V+  +T A+A L   D+ K   ++
Sbjct: 405 ---------------------------LVLRVP-LSVQSEMTAAIAVLALSDELKPHLLN 436

Query: 474 NNGLELLLGLLESTSVKQREESSVALYKLATKATSLSPM--DAAPPSPTQQVYLGEQFV- 530
               ++L+ L  S S++ +  S+ AL  L++K    S    D A P+     YL ++F+ 
Sbjct: 437 LGVFDVLIPLTNSESIEVQGNSAAALGNLSSKVGDYSIFVRDWADPNGGIHGYL-KRFLA 495

Query: 531 -NNPTLSDVTF 540
             +PT   +  
Sbjct: 496 SGDPTFQHIAI 506

Functions in both vacuole inheritance and protein targeting from the cytoplasm to vacuole.

Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879)

>sp|Q6IQ16|SPOPL_HUMAN Speckle-type POZ protein-like OS=Homo sapiens GN=SPOPL PE=2 SV=1

 Score = 93.2 bits (230), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 53/130 (40%), Positives = 75/130 (57%)

Query: 532 NPTLSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMM 591
           N   +D +F V G++F AH+  L A S  F AMF+   +E     VEI ++   VF+ MM
Sbjct: 196 NTRFTDCSFFVRGQEFKAHKSVLAARSPVFNAMFEHEMEESKKNRVEINDLDPEVFKEMM 255

Query: 592 RFIYTGNVDVSVDIAQDLLRAADQYLLEGLKRLCEYSIAQIISVENIMLMYELSEAYNAT 651
           RFIYTG       +A +LL AAD+Y LE LK +CE ++   +SVEN+     L++ ++A 
Sbjct: 256 RFIYTGRAPNLDKMADNLLAAADKYALERLKVMCEEALCSNLSVENVADTLVLADLHSAE 315

Query: 652 TLKQSCILFI 661
            LK   I FI
Sbjct: 316 QLKAQAIDFI 325

In complex with a cullin, may act in ubiquitination and proteasomal degradation processes.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	704
255552325	719	protein binding protein, putative [Ricin	0.948	0.929	0.772	0.0
225437008	704	PREDICTED: ARM REPEAT PROTEIN INTERACTIN	0.977	0.977	0.738	0.0
225432592	705	PREDICTED: ARM REPEAT PROTEIN INTERACTIN	0.992	0.991	0.741	0.0
356497472	706	PREDICTED: ARM REPEAT PROTEIN INTERACTIN	0.982	0.980	0.730	0.0
296086739	713	unnamed protein product [Vitis vinifera]	0.977	0.964	0.729	0.0
449432712	703	PREDICTED: ARM REPEAT PROTEIN INTERACTIN	0.992	0.994	0.746	0.0
225432594	711	PREDICTED: ARM REPEAT PROTEIN INTERACTIN	0.992	0.983	0.734	0.0
224102035	720	predicted protein [Populus trichocarpa]	0.994	0.972	0.725	0.0
356541384	708	PREDICTED: ARM REPEAT PROTEIN INTERACTIN	0.982	0.977	0.725	0.0
356536027	707	PREDICTED: ARM REPEAT PROTEIN INTERACTIN	0.984	0.980	0.723	0.0

>gi|255552325|ref|XP_002517207.1| protein binding protein, putative [Ricinus communis] gi|223543842|gb|EEF45370.1| protein binding protein, putative [Ricinus communis]

 Score = 1052 bits (2721), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 519/672 (77%), Positives = 597/672 (88%), Gaps = 4/672 (0%)

Query: 34  VESGATQQDLVQDIRAQIDILNSKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDNGA 93
           V  G  +Q L+ ++ +Q++ILNS FS +E DRAAAK A H L EFAKNEE+V++IV+ GA
Sbjct: 46  VPFGDARQALLYEVASQVNILNSTFSWNEADRAAAKRAIHVLAEFAKNEELVNVIVEGGA 105

Query: 94  VPALVEHLQTPP----QLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALPHLV 149
           VPALV+HLQ PP    ++  +  P+EHEVEK  AFALGLLAVKPEHQQ+IVD GAL HLV
Sbjct: 106 VPALVKHLQAPPSSSSEVDRSTKPFEHEVEKGSAFALGLLAVKPEHQQLIVDIGALSHLV 165

Query: 150 SLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKV 209
            LLK++K+G  SRA++ VIRRAADAITNLAHEN++IKTRVRVE GIPPLVELL+FVD KV
Sbjct: 166 ELLKRHKDGSVSRAVNSVIRRAADAITNLAHENSSIKTRVRVEGGIPPLVELLEFVDTKV 225

Query: 210 QRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSI 269
           QRAAAGALRTLAFKNDENKK IVECNALPTL+LMLRSEDA++H+EAVGVIGNLVHSSP+I
Sbjct: 226 QRAAAGALRTLAFKNDENKKQIVECNALPTLILMLRSEDAAIHYEAVGVIGNLVHSSPNI 285

Query: 270 KKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQ 329
           KKEV+ AGALQPVIGLLSS CSES+REAALLLGQFAA DS+ KVHIVQRGAV+PLIEMLQ
Sbjct: 286 KKEVLAAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVQPLIEMLQ 345

Query: 330 SPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLAD 389
           SPD QL+EMSAFALGRLAQD HNQAGIA +GG++PLLKLLDSKNGSLQHNAAFALYGLAD
Sbjct: 346 SPDVQLREMSAFALGRLAQDLHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLAD 405

Query: 390 NEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRA 449
           NEDNV+D +RVGGVQKLQDGEF VQ TKDCVA+TLKRLEEK+HGRVL+HLLYL+RV ++A
Sbjct: 406 NEDNVSDFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLHHLLYLMRVTEKA 465

Query: 450 VKRRVTLALAHLCAPDDCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLATKATSL 509
           V+RRV LALAHLC+PDD +TIFIDNNGLELLLGLL STS KQ+ + +VALYKLA KA +L
Sbjct: 466 VQRRVALALAHLCSPDDQRTIFIDNNGLELLLGLLGSTSPKQQLDGAVALYKLANKAATL 525

Query: 510 SPMDAAPPSPTQQVYLGEQFVNNPTLSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGY 569
           SP+DAAPPSPT QVYLGEQFVNN TLSDVTF+VEG++FYAHRICLLASSDAFRAMFDGGY
Sbjct: 526 SPVDAAPPSPTPQVYLGEQFVNNATLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGY 585

Query: 570 KEKNAKDVEIPNIRWNVFELMMRFIYTGNVDVSVDIAQDLLRAADQYLLEGLKRLCEYSI 629
           +EK+A+D+EIPNIRW VFELMMRFIYTG+VDVS+DIAQDLLRAADQYLLEGLKRLCEY+I
Sbjct: 586 REKDARDIEIPNIRWEVFELMMRFIYTGSVDVSLDIAQDLLRAADQYLLEGLKRLCEYTI 645

Query: 630 AQIISVENIMLMYELSEAYNATTLKQSCILFILEKFDKMRNKPWFFRLIRCVLPEIRNYF 689
           AQ IS+EN+  MYELSEA++A +L+ +CILFILE+FDK+  KP    LI+ ++PEIRNYF
Sbjct: 646 AQDISLENVASMYELSEAFHAISLRHTCILFILEQFDKLNAKPRHSNLIQRIIPEIRNYF 705

Query: 690 TKAFSNPVIVNS 701
            KA + P   NS
Sbjct: 706 AKALTKPNPHNS 717

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225437008|ref|XP_002272541.1| PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2 [Vitis vinifera]

 Score = 1051 bits (2718), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 512/693 (73%), Positives = 605/693 (87%), Gaps = 5/693 (0%)

Query: 8   TSPARRSLKRKLEQDFEEKPDRKVSIVESGATQQDLVQDIRAQIDILNSKFSSDETDRAA 67
            + AR+SLKRKLE++FEE  D ++  +      ++LV+++   + +LNS  SS E DR+A
Sbjct: 6   VASARKSLKRKLEEEFEE--DGRLDALSQPHALRELVREVGVHVSVLNSAISSSEADRSA 63

Query: 68  AKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLT---NAQIPYEHEVEKECAF 124
           AK A H L E AKN+EI ++IVD   VPALV HLQ+PP L    ++ IP+EHEVEK CA 
Sbjct: 64  AKRAVHVLTELAKNDEIANVIVDCQVVPALVGHLQSPPPLVEGDSSPIPFEHEVEKGCAL 123

Query: 125 ALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENAN 184
           ALGLLAVKPEHQQ+IVD GALPHLV LLK++++G  +RA++ V+RRAADAITNLAHEN+N
Sbjct: 124 ALGLLAVKPEHQQLIVDAGALPHLVELLKRHRSGYKTRAVNSVVRRAADAITNLAHENSN 183

Query: 185 IKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLML 244
           IKTRVR+E GIPPLVELLKF+D KVQ+AAAGALRTLAFKNDENK  IVECNALP L+LML
Sbjct: 184 IKTRVRIEGGIPPLVELLKFIDTKVQKAAAGALRTLAFKNDENKNQIVECNALPMLILML 243

Query: 245 RSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQF 304
           RSED  VH+EA+GVIGNLVHSSP+IKK+V+ AGALQPVI LL SSCSES+REAALLLGQF
Sbjct: 244 RSEDTGVHYEAIGVIGNLVHSSPNIKKDVLFAGALQPVIELLRSSCSESQREAALLLGQF 303

Query: 305 AAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILP 364
           AAADS+ K HIVQRGAV+PLI+MLQSPD QL+EMSAFALGRLAQD HNQAGIA +GG++P
Sbjct: 304 AAADSDCKAHIVQRGAVQPLIDMLQSPDVQLREMSAFALGRLAQDHHNQAGIAHNGGMVP 363

Query: 365 LLKLLDSKNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTL 424
           LLKLLDS+NGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQ+G F  QPTKDCVA+TL
Sbjct: 364 LLKLLDSRNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQEGVFNAQPTKDCVAKTL 423

Query: 425 KRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPDDCKTIFIDNNGLELLLGLL 484
           KRLEEK+HGRV+NHLLYL+RVA+++V+RRV LALAHLC+ +  K IFID +GLELLL LL
Sbjct: 424 KRLEEKIHGRVMNHLLYLMRVAEKSVQRRVVLALAHLCSLEHQKIIFIDGHGLELLLELL 483

Query: 485 ESTSVKQREESSVALYKLATKATSLSPMDAAPPSPTQQVYLGEQFVNNPTLSDVTFVVEG 544
           ESTSVK ++++SVALYKLA KATSL  +DAAP SPT QVYLGEQ+VNN TLSDVTF+VEG
Sbjct: 484 ESTSVKHQQDASVALYKLANKATSLCVVDAAPLSPTPQVYLGEQYVNNSTLSDVTFLVEG 543

Query: 545 KQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFIYTGNVDVSVD 604
           K+FYAHRICLLASSDAFRAMFDGGY+EK+A+D+EIPNIRW+VFELMMR+IYTG+VDV++D
Sbjct: 544 KRFYAHRICLLASSDAFRAMFDGGYREKDAQDIEIPNIRWDVFELMMRYIYTGSVDVNLD 603

Query: 605 IAQDLLRAADQYLLEGLKRLCEYSIAQIISVENIMLMYELSEAYNATTLKQSCILFILEK 664
           IAQDLLRAADQYLLEGLKRLCEY+IAQ ISVEN+ LMYELSEA+NA TL+ +CIL+ILE 
Sbjct: 604 IAQDLLRAADQYLLEGLKRLCEYAIAQDISVENVSLMYELSEAFNAMTLRHTCILYILEH 663

Query: 665 FDKMRNKPWFFRLIRCVLPEIRNYFTKAFSNPV 697
           F+K+  KPW+ RLI+C+LPEIR +F +A + PV
Sbjct: 664 FEKLTVKPWYSRLIQCILPEIRKFFREALTKPV 696

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432592|ref|XP_002281388.1| PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2 isoform 1 [Vitis vinifera] gi|297737016|emb|CBI26217.3| unnamed protein product [Vitis vinifera]

 Score = 1043 bits (2697), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 521/703 (74%), Positives = 614/703 (87%), Gaps = 4/703 (0%)

Query: 1   MDRRERQTSPARRSLKRKLEQDFEEKPDRKVSIVESGATQQDLVQDIRAQIDILNSKFSS 60
           + +R+ Q  P R+  KRKLE++FEE+  R++S+  SG   Q L  ++ AQ++ILN+ FS 
Sbjct: 3   LQKRQDQGQPERKGQKRKLEEEFEEE--REISVAPSGEAHQALSCEVSAQVNILNTTFSW 60

Query: 61  DETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQL--TNAQIPYEHEV 118
            E DRAAAK A+H L E AKNEE+V++IVD GAVPALV+HLQ PP     + Q P+EHEV
Sbjct: 61  KEADRAAAKRATHVLAELAKNEEVVNVIVDGGAVPALVKHLQAPPSSDGDHDQRPFEHEV 120

Query: 119 EKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNL 178
           EK  AFALGLLAVKPEHQQ+IVD GAL HLV LLK++++G NSRA++ VIRRAADA+TNL
Sbjct: 121 EKGSAFALGLLAVKPEHQQLIVDNGALSHLVDLLKRHRDGSNSRAVNSVIRRAADAVTNL 180

Query: 179 AHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALP 238
           AHEN++IKTRVR+E GIPPLV+LL+F D KVQRAAAGALRTLAFKNDENK  IVECNALP
Sbjct: 181 AHENSSIKTRVRMEGGIPPLVQLLEFADTKVQRAAAGALRTLAFKNDENKNQIVECNALP 240

Query: 239 TLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAA 298
           TL+LMLRSEDA++H+EAVGVIGNLVHSSP+IKKEV+LAGALQPVIGLLSS CSES+REAA
Sbjct: 241 TLILMLRSEDAAIHYEAVGVIGNLVHSSPNIKKEVLLAGALQPVIGLLSSCCSESQREAA 300

Query: 299 LLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQ 358
           LLLGQFAA DS+ KVHI QRGAVRPLIEMLQS D QL+EMSAFALGRLAQDTHNQAGIA 
Sbjct: 301 LLLGQFAATDSDCKVHIAQRGAVRPLIEMLQSADVQLREMSAFALGRLAQDTHNQAGIAH 360

Query: 359 DGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKD 418
           +GG++PLLKLLDSKNGSLQHNAAFALYGLADNEDNV+D ++VGGVQKLQDGEF VQ TKD
Sbjct: 361 NGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVSDFIKVGGVQKLQDGEFIVQATKD 420

Query: 419 CVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPDDCKTIFIDNNGLE 478
           CVA+TLKRLEEK+HGRVLNHLLYL+RV+++AV+RRV LALAHLC+ DD +TIFIDNNGLE
Sbjct: 421 CVAKTLKRLEEKIHGRVLNHLLYLMRVSEKAVQRRVALALAHLCSADDQRTIFIDNNGLE 480

Query: 479 LLLGLLESTSVKQREESSVALYKLATKATSLSPMDAAPPSPTQQVYLGEQFVNNPTLSDV 538
           LLLGLL S+S KQ+ + SVALYKLA KA +LSP+DAAPPSPT QVYLGEQ+VN+ TLSDV
Sbjct: 481 LLLGLLGSSSPKQQLDGSVALYKLANKAMTLSPVDAAPPSPTPQVYLGEQYVNSATLSDV 540

Query: 539 TFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFIYTGN 598
           TF+V GK+FYAHRICLLASSDAFRAMFDGGY+EK+A+D+EIPNIRW VFELMMRFIYTG+
Sbjct: 541 TFLVGGKRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGS 600

Query: 599 VDVSVDIAQDLLRAADQYLLEGLKRLCEYSIAQIISVENIMLMYELSEAYNATTLKQSCI 658
           V++++DIAQDLLRAADQYLLEGLKRLCEY+IAQ IS+EN+  MYELSEA++A +L+ +CI
Sbjct: 601 VEITLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCI 660

Query: 659 LFILEKFDKMRNKPWFFRLIRCVLPEIRNYFTKAFSNPVIVNS 701
           LFILE+F K+ ++P    LI+ ++PEIR YF KA + P   NS
Sbjct: 661 LFILEQFSKLSSRPGHSHLIQRIIPEIRTYFAKALTKPNPHNS 703

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497472|ref|XP_003517584.1| PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2-like [Glycine max]

 Score = 1041 bits (2691), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 510/698 (73%), Positives = 604/698 (86%), Gaps = 6/698 (0%)

Query: 1   MDRRERQTSPARRSLKRKLEQDFEEKPDRKVSIVESGATQQDLVQDIRAQIDILNSKFSS 60
           + RR  Q  P R+ LKRKLE++F++ P  ++S   +G  +  L+ D++ Q+ +L+S FS 
Sbjct: 3   LQRRPDQCLPVRKGLKRKLEEEFDDDP--QISAPPTGDARDALLSDVKEQVSLLDSNFSW 60

Query: 61  DETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIP----YEH 116
           +E DRAAAK A+HAL + AKNEE+V++IV+ GA+PALV+HLQ PP   + ++P    +EH
Sbjct: 61  NEHDRAAAKRATHALADLAKNEEVVNVIVEGGAIPALVKHLQAPPLAESDRLPRPMPFEH 120

Query: 117 EVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAIT 176
           EVEK  AFALGLLAVKPEHQQ+IVD+GAL HLV LLK++KNG  SRA++ +IRRAADAIT
Sbjct: 121 EVEKGSAFALGLLAVKPEHQQLIVDSGALKHLVDLLKRHKNGLTSRAINSLIRRAADAIT 180

Query: 177 NLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNA 236
           NLAHEN++IKTRVR E GIPPLV LL+F D KVQRAAAGALRTLAFKNDENK  IVECNA
Sbjct: 181 NLAHENSSIKTRVRFEGGIPPLVHLLEFADTKVQRAAAGALRTLAFKNDENKNQIVECNA 240

Query: 237 LPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKRE 296
           LPTL+LMLRSEDA++H+EAVGVIGNLVHSSP IKKEV+LAGALQPVIGLLSS CSES+RE
Sbjct: 241 LPTLILMLRSEDAAIHYEAVGVIGNLVHSSPDIKKEVLLAGALQPVIGLLSSCCSESQRE 300

Query: 297 AALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGI 356
           AALLLGQFAA DS+ KVHIVQRGAVRPLIEMLQS D QLKEMSAFALGRLAQDTHNQAGI
Sbjct: 301 AALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSSDVQLKEMSAFALGRLAQDTHNQAGI 360

Query: 357 AQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPT 416
             +GG++PLLKLLDSKNGSLQHNAAFALYGLADNEDNV+D +RVGG+Q+LQDGEF VQ T
Sbjct: 361 VHNGGLMPLLKLLDSKNGSLQHNAAFALYGLADNEDNVSDFIRVGGIQRLQDGEFIVQAT 420

Query: 417 KDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPDDCKTIFIDNNG 476
           KDCVA+TLKRLEEK+HGRVLNHLLYL+RV+++A +RRV L LAHLC+ DD + IFID NG
Sbjct: 421 KDCVAKTLKRLEEKIHGRVLNHLLYLMRVSEKAFQRRVALTLAHLCSADDQRKIFIDYNG 480

Query: 477 LELLLGLLESTSVKQREESSVALYKLATKATSLSPMDAAPPSPTQQVYLGEQFVNNPTLS 536
           LELL+GLL S + KQ+ + +VAL KLA KA +LSP+DAAPPSPT QVYLGEQ+VNN TLS
Sbjct: 481 LELLMGLLGSYNPKQQLDGAVALCKLANKAMTLSPVDAAPPSPTPQVYLGEQYVNNATLS 540

Query: 537 DVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFIYT 596
           DVTF+VEGK+FYAHRICLLASSDAFRAMFDGGY+EK A+D+EIPNIRW VFELMMRFIYT
Sbjct: 541 DVTFLVEGKRFYAHRICLLASSDAFRAMFDGGYREKEARDIEIPNIRWEVFELMMRFIYT 600

Query: 597 GNVDVSVDIAQDLLRAADQYLLEGLKRLCEYSIAQIISVENIMLMYELSEAYNATTLKQS 656
           G+VD+++DIAQDLLRAADQYLLEGLKRLCEY+IAQ IS+EN+  MYELSEA+NA +L+ +
Sbjct: 601 GSVDITLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFNAISLRHT 660

Query: 657 CILFILEKFDKMRNKPWFFRLIRCVLPEIRNYFTKAFS 694
           CILFILE +DK+  KP   +LI+ ++PEI+NYF KA +
Sbjct: 661 CILFILEHYDKLGGKPGHSQLIQHIIPEIQNYFVKAIT 698

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296086739|emb|CBI32374.3| unnamed protein product [Vitis vinifera]

 Score = 1040 bits (2688), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 512/702 (72%), Positives = 605/702 (86%), Gaps = 14/702 (1%)

Query: 8   TSPARRSLKRKLEQDFEEKPDRKVSIVESGATQQDLVQDIRAQIDILNSKFSSDETDRAA 67
            + AR+SLKRKLE++FEE  D ++  +      ++LV+++   + +LNS  SS E DR+A
Sbjct: 6   VASARKSLKRKLEEEFEE--DGRLDALSQPHALRELVREVGVHVSVLNSAISSSEADRSA 63

Query: 68  AKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLT---NAQIPYEHEVEKECAF 124
           AK A H L E AKN+EI ++IVD   VPALV HLQ+PP L    ++ IP+EHEVEK CA 
Sbjct: 64  AKRAVHVLTELAKNDEIANVIVDCQVVPALVGHLQSPPPLVEGDSSPIPFEHEVEKGCAL 123

Query: 125 ALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENAN 184
           ALGLLAVKPEHQQ+IVD GALPHLV LLK++++G  +RA++ V+RRAADAITNLAHEN+N
Sbjct: 124 ALGLLAVKPEHQQLIVDAGALPHLVELLKRHRSGYKTRAVNSVVRRAADAITNLAHENSN 183

Query: 185 IKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLML 244
           IKTRVR+E GIPPLVELLKF+D KVQ+AAAGALRTLAFKNDENK  IVECNALP L+LML
Sbjct: 184 IKTRVRIEGGIPPLVELLKFIDTKVQKAAAGALRTLAFKNDENKNQIVECNALPMLILML 243

Query: 245 RSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQF 304
           RSED  VH+EA+GVIGNLVHSSP+IKK+V+ AGALQPVI LL SSCSES+REAALLLGQF
Sbjct: 244 RSEDTGVHYEAIGVIGNLVHSSPNIKKDVLFAGALQPVIELLRSSCSESQREAALLLGQF 303

Query: 305 AAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQ--------DTHNQAGI 356
           AAADS+ K HIVQRGAV+PLI+MLQSPD QL+EMSAFALGRLAQ        D HNQAGI
Sbjct: 304 AAADSDCKAHIVQRGAVQPLIDMLQSPDVQLREMSAFALGRLAQFMSFVGVADHHNQAGI 363

Query: 357 AQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPT 416
           A +GG++PLLKLLDS+NGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQ+G F  QPT
Sbjct: 364 AHNGGMVPLLKLLDSRNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQEGVFNAQPT 423

Query: 417 KDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPDDCKTIFIDNNG 476
           KDCVA+TLKRLEEK+HGRV+NHLLYL+RVA+++V+RRV LALAHLC+ +  K IFID +G
Sbjct: 424 KDCVAKTLKRLEEKIHGRVMNHLLYLMRVAEKSVQRRVVLALAHLCSLEHQKIIFIDGHG 483

Query: 477 LELLLGLLESTSVKQREESSVALYKLATKATSLSPMDAAPPSPTQQVYLGEQFVNNPTLS 536
           LELLL LLESTSVK ++++SVALYKLA KATSL  +DAAP SPT QVYLGEQ+VNN TLS
Sbjct: 484 LELLLELLESTSVKHQQDASVALYKLANKATSLCVVDAAPLSPTPQVYLGEQYVNNSTLS 543

Query: 537 DVTFVVEG-KQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFIY 595
           DVTF+VEG K+FYAHRICLLASSDAFRAMFDGGY+EK+A+D+EIPNIRW+VFELMMR+IY
Sbjct: 544 DVTFLVEGRKRFYAHRICLLASSDAFRAMFDGGYREKDAQDIEIPNIRWDVFELMMRYIY 603

Query: 596 TGNVDVSVDIAQDLLRAADQYLLEGLKRLCEYSIAQIISVENIMLMYELSEAYNATTLKQ 655
           TG+VDV++DIAQDLLRAADQYLLEGLKRLCEY+IAQ ISVEN+ LMYELSEA+NA TL+ 
Sbjct: 604 TGSVDVNLDIAQDLLRAADQYLLEGLKRLCEYAIAQDISVENVSLMYELSEAFNAMTLRH 663

Query: 656 SCILFILEKFDKMRNKPWFFRLIRCVLPEIRNYFTKAFSNPV 697
           +CIL+ILE F+K+  KPW+ RLI+C+LPEIR +F +A + PV
Sbjct: 664 TCILYILEHFEKLTVKPWYSRLIQCILPEIRKFFREALTKPV 705

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432712|ref|XP_004134143.1| PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2-like [Cucumis sativus]

 Score = 1038 bits (2684), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 527/706 (74%), Positives = 622/706 (88%), Gaps = 7/706 (0%)

Query: 1   MDRRERQTSPARRSLKRKLEQDFEEKPDRKVSIVESGATQQDLVQDIRAQIDILNSKFSS 60
           + +R  Q  P R+  KRKLE++FEE+  R++S V +G  +Q ++ ++  Q++ILNS FS 
Sbjct: 3   LQKRLDQNLPERKGHKRKLEEEFEEE--REIS-VPTGDAKQAILTEVSDQVEILNSTFSW 59

Query: 61  DETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQI--PYEHEV 118
            E DRAAAK A+H L E AKNEE+V++IV+ GAVPALV+HLQ PP +   +   P+EHEV
Sbjct: 60  KEADRAAAKRATHVLAELAKNEEVVNVIVEGGAVPALVKHLQAPPTIEGDRSLKPFEHEV 119

Query: 119 EKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNL 178
           EK  AFALGLLAVKPEHQQ+IVD GAL HLV LLK++K+G +SRA++ VIRRAADAITNL
Sbjct: 120 EKGSAFALGLLAVKPEHQQLIVDIGALSHLVELLKRHKDG-SSRAVNSVIRRAADAITNL 178

Query: 179 AHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALP 238
           AHEN+ IKTRVR+E GIPPLVELL+F D KVQRAAAGALRTLAFKNDENK  IVECNALP
Sbjct: 179 AHENSFIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALP 238

Query: 239 TLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAA 298
           TL+LMLRSEDA++H+EAVGVIGNLVHSSP+IK+EV+LAGALQPVIGLLSS CSES+REAA
Sbjct: 239 TLILMLRSEDAAIHYEAVGVIGNLVHSSPNIKREVLLAGALQPVIGLLSSCCSESQREAA 298

Query: 299 LLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQ 358
           LLLGQFAA DS+ K+HIVQRGAVRPLIEMLQSPD QL+EMSAFALGRLAQ+THNQAGIA 
Sbjct: 299 LLLGQFAATDSDCKIHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQETHNQAGIAH 358

Query: 359 DGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKD 418
           +GG++PLLKLLDSKNGSLQHNAAFALYGLADNEDNV+D +RVGGVQKLQDGEF VQ TKD
Sbjct: 359 NGGLMPLLKLLDSKNGSLQHNAAFALYGLADNEDNVSDFIRVGGVQKLQDGEFIVQATKD 418

Query: 419 CVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPDDCKTIFIDNNGLE 478
           CVA+TLKRLEEK+HGRVLNHLL+L+RVA++AV+RRV+LALAHLC+PDD +TIFIDNNGLE
Sbjct: 419 CVAKTLKRLEEKIHGRVLNHLLHLMRVAEKAVQRRVSLALAHLCSPDDQRTIFIDNNGLE 478

Query: 479 LLLGLLESTSVKQREESSVALYKLATKATSLSPMDAAPPSPTQQVYLGEQFVNNPTLSDV 538
           LLLGLL S+S+KQ+ + +VALYKLA KAT+LS +DAAPPSPT QVYLGEQ+VNNPTLSDV
Sbjct: 479 LLLGLLGSSSLKQQLDGAVALYKLANKATTLSSVDAAPPSPTPQVYLGEQYVNNPTLSDV 538

Query: 539 TFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFIYTGN 598
           TF+VEG++F+AHRICLLASSDAFRAMFDGGY+EK+AKD+EIPNIRW VFELMMRF+YTG+
Sbjct: 539 TFLVEGRRFHAHRICLLASSDAFRAMFDGGYREKDAKDIEIPNIRWEVFELMMRFVYTGS 598

Query: 599 VDVSVDIAQDLLRAADQYLLEGLKRLCEYSIAQIISVENIMLMYELSEAYNATTLKQSCI 658
           VDVS+DIAQDLLRAADQYLLEGLKRL EY+IAQ IS+EN+  MYELSEA+NA +L+ +CI
Sbjct: 599 VDVSLDIAQDLLRAADQYLLEGLKRLSEYTIAQDISLENVSSMYELSEAFNAISLRHTCI 658

Query: 659 LFILEKFDKMRNKPWFFRLIRCVLPEIRNYFTKAFSNPVIVNSSQL 704
           LFILE+F+K+   P    LI+ +LPEIRNYF KA +  V + SS+L
Sbjct: 659 LFILEQFEKLSLMPGHSLLIQRILPEIRNYFAKALTK-VNLQSSRL 703

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432594|ref|XP_002281401.1| PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2 isoform 2 [Vitis vinifera]

 Score = 1036 bits (2679), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 521/709 (73%), Positives = 614/709 (86%), Gaps = 10/709 (1%)

Query: 1   MDRRERQTSPARRSLKRKLEQDFEEKPDRKVSIVESGATQQDLVQDIRAQIDILNSKFSS 60
           + +R+ Q  P R+  KRKLE++FEE+  R++S+  SG   Q L  ++ AQ++ILN+ FS 
Sbjct: 3   LQKRQDQGQPERKGQKRKLEEEFEEE--REISVAPSGEAHQALSCEVSAQVNILNTTFSW 60

Query: 61  DETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQL--TNAQIPYEHEV 118
            E DRAAAK A+H L E AKNEE+V++IVD GAVPALV+HLQ PP     + Q P+EHEV
Sbjct: 61  KEADRAAAKRATHVLAELAKNEEVVNVIVDGGAVPALVKHLQAPPSSDGDHDQRPFEHEV 120

Query: 119 EKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNL 178
           EK  AFALGLLAVKPEHQQ+IVD GAL HLV LLK++++G NSRA++ VIRRAADA+TNL
Sbjct: 121 EKGSAFALGLLAVKPEHQQLIVDNGALSHLVDLLKRHRDGSNSRAVNSVIRRAADAVTNL 180

Query: 179 AHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALP 238
           AHEN++IKTRVR+E GIPPLV+LL+F D KVQRAAAGALRTLAFKNDENK  IVECNALP
Sbjct: 181 AHENSSIKTRVRMEGGIPPLVQLLEFADTKVQRAAAGALRTLAFKNDENKNQIVECNALP 240

Query: 239 TLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAA 298
           TL+LMLRSEDA++H+EAVGVIGNLVHSSP+IKKEV+LAGALQPVIGLLSS CSES+REAA
Sbjct: 241 TLILMLRSEDAAIHYEAVGVIGNLVHSSPNIKKEVLLAGALQPVIGLLSSCCSESQREAA 300

Query: 299 LLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLA------QDTHN 352
           LLLGQFAA DS+ KVHI QRGAVRPLIEMLQS D QL+EMSAFALGRLA      QDTHN
Sbjct: 301 LLLGQFAATDSDCKVHIAQRGAVRPLIEMLQSADVQLREMSAFALGRLAQKFLFCQDTHN 360

Query: 353 QAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFT 412
           QAGIA +GG++PLLKLLDSKNGSLQHNAAFALYGLADNEDNV+D ++VGGVQKLQDGEF 
Sbjct: 361 QAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVSDFIKVGGVQKLQDGEFI 420

Query: 413 VQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPDDCKTIFI 472
           VQ TKDCVA+TLKRLEEK+HGRVLNHLLYL+RV+++AV+RRV LALAHLC+ DD +TIFI
Sbjct: 421 VQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVSEKAVQRRVALALAHLCSADDQRTIFI 480

Query: 473 DNNGLELLLGLLESTSVKQREESSVALYKLATKATSLSPMDAAPPSPTQQVYLGEQFVNN 532
           DNNGLELLLGLL S+S KQ+ + SVALYKLA KA +LSP+DAAPPSPT QVYLGEQ+VN+
Sbjct: 481 DNNGLELLLGLLGSSSPKQQLDGSVALYKLANKAMTLSPVDAAPPSPTPQVYLGEQYVNS 540

Query: 533 PTLSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMR 592
            TLSDVTF+V GK+FYAHRICLLASSDAFRAMFDGGY+EK+A+D+EIPNIRW VFELMMR
Sbjct: 541 ATLSDVTFLVGGKRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMR 600

Query: 593 FIYTGNVDVSVDIAQDLLRAADQYLLEGLKRLCEYSIAQIISVENIMLMYELSEAYNATT 652
           FIYTG+V++++DIAQDLLRAADQYLLEGLKRLCEY+IAQ IS+EN+  MYELSEA++A +
Sbjct: 601 FIYTGSVEITLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAIS 660

Query: 653 LKQSCILFILEKFDKMRNKPWFFRLIRCVLPEIRNYFTKAFSNPVIVNS 701
           L+ +CILFILE+F K+ ++P    LI+ ++PEIR YF KA + P   NS
Sbjct: 661 LRHTCILFILEQFSKLSSRPGHSHLIQRIIPEIRTYFAKALTKPNPHNS 709

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224102035|ref|XP_002312519.1| predicted protein [Populus trichocarpa] gi|222852339|gb|EEE89886.1| predicted protein [Populus trichocarpa]

 Score = 1030 bits (2664), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 520/717 (72%), Positives = 616/717 (85%), Gaps = 17/717 (2%)

Query: 1   MDRRERQTSPARRSLKRKLEQDFEEKPDRKVSIVES------GATQQDLVQDIRAQIDIL 54
           + + + Q  P R+  KRKLE++  E+  R++S  E+      G  ++ ++ ++  Q++IL
Sbjct: 3   LKKHQDQRVPERKGQKRKLEEE-IEEGKREISAAEAAAAAPYGEARRVILNEVYTQVNIL 61

Query: 55  NSKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLT---NAQ 111
           NS FS  ET R AAK A+H L E AKNEE+V++IV+ GAVPALV+HL+ PP      N  
Sbjct: 62  NSTFSWHETHRGAAKRATHILAELAKNEEVVNVIVEGGAVPALVKHLEAPPSSEIDHNNS 121

Query: 112 IPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQ----YKNGGNSRALSGV 167
            P+EHEVEKE AFALGLLAVKPEHQQIIVD GAL HLVSLLK+    +++G NSRA++ V
Sbjct: 122 KPFEHEVEKESAFALGLLAVKPEHQQIIVDAGALSHLVSLLKRQRDVHRDGSNSRAVNSV 181

Query: 168 IRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDEN 227
           IRRAADAITNLAHEN++IKTRVR+E GIPPLVELL+F D KVQRAAAGALRTLAFKNDEN
Sbjct: 182 IRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDEN 241

Query: 228 KKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLS 287
           K  IVEC ALPTL+LMLRS+DA++H+EAVGVIGNLVHSSP+IK+EV+ AGALQPVIGLLS
Sbjct: 242 KNQIVECYALPTLILMLRSDDAAIHYEAVGVIGNLVHSSPNIKREVLAAGALQPVIGLLS 301

Query: 288 SSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLA 347
           S CSES+REAALLLGQFAA DS+ KVHIVQRGAVRPLIEMLQSPD QL+EMSAFALGRLA
Sbjct: 302 SCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLA 361

Query: 348 QDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQ 407
           QDTHNQAGIA +GG++PLLKLLDSKNGSLQHNAAFALYGLADNEDNV+D + VGGVQKLQ
Sbjct: 362 QDTHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVSDFISVGGVQKLQ 421

Query: 408 DGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPDDC 467
           DGEF VQ TKDCVA+TLKRLEEK+HGRVLNHLLYL+RVA++AV+RRV LALAHLC+PDD 
Sbjct: 422 DGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKAVQRRVALALAHLCSPDDQ 481

Query: 468 KTIFIDNNG---LELLLGLLESTSVKQREESSVALYKLATKATSLSPMDAAPPSPTQQVY 524
           + IFIDN G   L+LLLGLL S+S+KQ+ + ++ALY+LA KAT+LSP+DAAPPSPT QVY
Sbjct: 482 RAIFIDNCGTAGLDLLLGLLGSSSLKQQLDGAIALYRLANKATTLSPVDAAPPSPTPQVY 541

Query: 525 LGEQFVNNPTLSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRW 584
           LGEQ+VNNPTLSDVTF+VEG++FYAHRICLLASSDAFRAMFDGGY+EK+A+D+EIPNIRW
Sbjct: 542 LGEQYVNNPTLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRW 601

Query: 585 NVFELMMRFIYTGNVDVSVDIAQDLLRAADQYLLEGLKRLCEYSIAQIISVENIMLMYEL 644
            VFELMMRFIYTG+VDV++ IAQDLLRAADQYLLEGLKRLCEY+IAQ I++ENI  MYEL
Sbjct: 602 EVFELMMRFIYTGSVDVTLIIAQDLLRAADQYLLEGLKRLCEYTIAQDITLENIGSMYEL 661

Query: 645 SEAYNATTLKQSCILFILEKFDKMRNKPWFFRLIRCVLPEIRNYFTKAFSNPVIVNS 701
           SEA++A +L+  CILFILE+FDK+ +KP   +LI+ ++PEIRNYF KA +NP   NS
Sbjct: 662 SEAFHAISLRHRCILFILEQFDKLSDKPRHSQLIQRIIPEIRNYFEKALTNPHQHNS 718

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356541384|ref|XP_003539157.1| PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2-like [Glycine max]

 Score = 1029 bits (2660), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 508/700 (72%), Positives = 599/700 (85%), Gaps = 8/700 (1%)

Query: 1   MDRRERQTSPARRSLKRKLEQDFEEKPDRKVSIVESGATQQDLVQDIRAQIDILNSKFSS 60
           + RR  Q  P R+  KRKLE++F++ P  ++S   +G  +  L+ D++ Q+ +L+S FS 
Sbjct: 3   LQRRPDQCLPERKGQKRKLEEEFDDDP--QISPPPTGDARDALLSDVKEQVSLLDSTFSW 60

Query: 61  DETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPP------QLTNAQIPY 114
           +E DRAAAK A+HAL + AKNEE+V++IV+ GA+PALV+HLQ PP            +P+
Sbjct: 61  NEPDRAAAKRATHALADLAKNEEVVNVIVEGGAIPALVKHLQVPPLPLPETDRVPRPMPF 120

Query: 115 EHEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADA 174
           EHEVEK  AFALGLLAVKPEHQQ+IVD+GAL HLV LLK++KNG  SRA++ +IRRAADA
Sbjct: 121 EHEVEKGSAFALGLLAVKPEHQQLIVDSGALKHLVDLLKRHKNGLTSRAINSLIRRAADA 180

Query: 175 ITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVEC 234
           ITNLAHEN++IKTRVR E GIPPLV LL+F D KVQRAAAGALRTLAFKNDENK  IVEC
Sbjct: 181 ITNLAHENSSIKTRVRKEGGIPPLVHLLEFADTKVQRAAAGALRTLAFKNDENKNQIVEC 240

Query: 235 NALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESK 294
           NALPTL+LML SEDA++H+EAVGVIGNLVHSSP IKKEV+LAGALQPVIGLLSS CSES+
Sbjct: 241 NALPTLILMLCSEDAAIHYEAVGVIGNLVHSSPDIKKEVLLAGALQPVIGLLSSCCSESQ 300

Query: 295 REAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQA 354
           REAALLLGQFAA DS+ KVHIVQRGAVRPLIEMLQS D QLKEMSAFALGRLAQDTHNQA
Sbjct: 301 REAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSSDVQLKEMSAFALGRLAQDTHNQA 360

Query: 355 GIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQ 414
           GIA +GG++PLLKLLDSKNGSLQHNAAFALYGLADNEDNV+D +RVGG+Q+LQDGEF VQ
Sbjct: 361 GIAHNGGLMPLLKLLDSKNGSLQHNAAFALYGLADNEDNVSDFIRVGGIQRLQDGEFIVQ 420

Query: 415 PTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPDDCKTIFIDN 474
            TKDCVA+TLKRLEEK+HGRVLNHLLYL+RV+++A +RRV L LAHLC+ DD + IFID 
Sbjct: 421 ATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVSEKAFQRRVALTLAHLCSADDQRKIFIDY 480

Query: 475 NGLELLLGLLESTSVKQREESSVALYKLATKATSLSPMDAAPPSPTQQVYLGEQFVNNPT 534
           NGLELL+GLL S + KQ+ + +VAL KLA KA +LSP+DAAPPSPT QVYLGEQ+VNN T
Sbjct: 481 NGLELLMGLLGSYNPKQQLDGAVALCKLANKAMTLSPVDAAPPSPTPQVYLGEQYVNNVT 540

Query: 535 LSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFI 594
           LSDVTF+VEGK+FYAHRICLLASSDAFRAMFDGGY+EK A+D+EIPNIRW VFE MMRFI
Sbjct: 541 LSDVTFLVEGKRFYAHRICLLASSDAFRAMFDGGYREKEARDIEIPNIRWEVFEPMMRFI 600

Query: 595 YTGNVDVSVDIAQDLLRAADQYLLEGLKRLCEYSIAQIISVENIMLMYELSEAYNATTLK 654
           YTG+VD+++DIAQDLLRAADQYLLEGLKRLCEY+IAQ IS+EN+  MYELSEA+NA +L+
Sbjct: 601 YTGSVDITLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFNAISLR 660

Query: 655 QSCILFILEKFDKMRNKPWFFRLIRCVLPEIRNYFTKAFS 694
            +CILFILE +DK+  KP    LI+ ++PEI+NYF KA +
Sbjct: 661 HTCILFILEHYDKLSGKPGHSHLIQRIIPEIQNYFVKALT 700

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536027|ref|XP_003536542.1| PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2-like [Glycine max]

 Score = 1023 bits (2645), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 504/697 (72%), Positives = 599/697 (85%), Gaps = 4/697 (0%)

Query: 1   MDRRERQTSPARRSLKRKLEQDFEEKPDRKVSIVESGATQQD-LVQDIRAQIDILNSKFS 59
           + RR+ Q+   R+  KRKL+++ +   DR++S     A ++  L+ D+  Q+ IL S F+
Sbjct: 3   LQRRQDQSLSQRKGQKRKLDEE-QHHEDRQISPAPPTADERAALLSDVAEQVSILESTFT 61

Query: 60  SDETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQ--IPYEHE 117
            +E DR+AAK A+HAL + AKNE++V+LIV+ GA+PALV+HLQ PP     Q  +P+EHE
Sbjct: 62  WNEADRSAAKRATHALADLAKNEDVVNLIVEGGAIPALVKHLQAPPLSDRVQNPLPFEHE 121

Query: 118 VEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITN 177
           VEK  AF LGLLAVKPEHQQ IVD+GAL HLV LLK+++NG  SRA++ +IRRAADAITN
Sbjct: 122 VEKGSAFTLGLLAVKPEHQQFIVDSGALTHLVDLLKRHRNGLTSRAINSLIRRAADAITN 181

Query: 178 LAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNAL 237
           LAHEN++IKTRVR+E GIPPLV LL F D KVQRAAAGALRTLAFKNDENK  IVECNAL
Sbjct: 182 LAHENSSIKTRVRMEGGIPPLVHLLDFADAKVQRAAAGALRTLAFKNDENKNQIVECNAL 241

Query: 238 PTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREA 297
           PTL+LMLRSEDA VH+EAVGVIGNLVHSSP+IKKEV+LAGALQPVIGLLSS CSES+REA
Sbjct: 242 PTLILMLRSEDAGVHYEAVGVIGNLVHSSPNIKKEVLLAGALQPVIGLLSSCCSESQREA 301

Query: 298 ALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIA 357
           ALLLGQFAA DS+ KVHIVQRGAV+PLIEMLQSPD QL+EMSAFALGRLAQD HNQAGIA
Sbjct: 302 ALLLGQFAATDSDCKVHIVQRGAVQPLIEMLQSPDVQLREMSAFALGRLAQDPHNQAGIA 361

Query: 358 QDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTK 417
            +GG++PLLKLLDSKNGSLQHNAAFALYGLADNEDN +D +RVGGVQ+LQDGEF VQ TK
Sbjct: 362 HNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNASDFIRVGGVQRLQDGEFIVQATK 421

Query: 418 DCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPDDCKTIFIDNNGL 477
           DCVA+TLKRLEEK+HGRVLNHLLYL+RV+++  +RRV LALAHLC+ DD + IFID+ GL
Sbjct: 422 DCVAKTLKRLEEKIHGRVLNHLLYLMRVSEKGCQRRVALALAHLCSSDDQRIIFIDHYGL 481

Query: 478 ELLLGLLESTSVKQREESSVALYKLATKATSLSPMDAAPPSPTQQVYLGEQFVNNPTLSD 537
           ELL+GLL S+S KQ+ + +VAL KLA KA++LSP+DAAPPSPT QVYLGEQ+VNN TLSD
Sbjct: 482 ELLIGLLGSSSSKQQLDGAVALCKLADKASTLSPVDAAPPSPTPQVYLGEQYVNNATLSD 541

Query: 538 VTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFIYTG 597
           VTF+VEGK+FYAHRICLLASSDAFRAMFDGGY+EK A+D+EIPNIRW VFELMMRF+Y G
Sbjct: 542 VTFLVEGKRFYAHRICLLASSDAFRAMFDGGYREKEARDIEIPNIRWEVFELMMRFVYCG 601

Query: 598 NVDVSVDIAQDLLRAADQYLLEGLKRLCEYSIAQIISVENIMLMYELSEAYNATTLKQSC 657
           +VDV++DIAQDLLRAADQYLLEGLKRLCEY+IAQ IS+EN+  MYEL+EA+NA +L+ +C
Sbjct: 602 SVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELTEAFNAISLRHAC 661

Query: 658 ILFILEKFDKMRNKPWFFRLIRCVLPEIRNYFTKAFS 694
           ILFILE+FDK+ ++P    LI+ + PEIRNYF KA +
Sbjct: 662 ILFILEQFDKLSSRPGHSLLIQRITPEIRNYFVKALT 698

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	704
TAIR|locus:2150295	710	ARIA "ARM repeat protein inter	0.982	0.974	0.702	2.6e-260
TAIR|locus:2179842	737	ABAP1 "ARMADILLO BTB protein 1	0.985	0.941	0.605	7.9e-220
SGD|S000000739	578	VAC8 "Phosphorylated and palmi	0.465	0.567	0.292	1.1e-21
FB|FBgn0264711	1326	CG43980 [Drosophila melanogast	0.220	0.116	0.388	1.9e-21
ASPGD|ASPL0000008980	579	AN12408 [Emericella nidulans (	0.399	0.485	0.308	3.8e-21
CGD|CAL0001835	585	VAC8 [Candida albicans (taxid:	0.475	0.572	0.289	1.4e-19
UNIPROTKB|Q59MN0	585	VAC8 "Vacuolar protein 8" [Can	0.475	0.572	0.289	1.4e-19
UNIPROTKB|E1BWB8	1025	E1BWB8 "Uncharacterized protei	0.254	0.174	0.336	2.4e-19
POMBASE|SPBC354.14c	550	vac8 "vacuolar protein Vac8 (p	0.539	0.690	0.265	2.5e-18
UNIPROTKB|F1SGS8	1025	ABTB2 "Uncharacterized protein	0.267	0.183	0.33	6.1e-18

TAIR|locus:2150295 ARIA "ARM repeat protein interacting with ABF2" [Arabidopsis thaliana (taxid:3702)]

 Score = 2505 (886.9 bits), Expect = 2.6e-260, P = 2.6e-260
 Identities = 488/695 (70%), Positives = 589/695 (84%)

Query:     2 DRRERQTSPARRSLKRKLEQDFEEKPDRKVSIVESGATQQDLVQDIRAQIDILNSKFSSD 61
             +RRE ++ P R+  KRKLE+      DR++S V +   Q  L+ ++ AQ+ +LNS FS  
Sbjct:     6 ERREGRSFPERKGQKRKLEEGAAAVEDREISAVSTDGGQA-LLSEVAAQVSVLNSAFSWQ 64

Query:    62 ETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTN--AQIPYEHEVE 119
             E+DRAAAK A+  L E AKNE++V++IVD GAVPAL+ HLQ PP      A+ PYEHEVE
Sbjct:    65 ESDRAAAKRATQVLAELAKNEDLVNVIVDGGAVPALMTHLQAPPYNDGDLAEKPYEHEVE 124

Query:   120 KECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLA 179
             K  AFALGLLA+KPE+Q++IVD GALPHLV+LLK+ K+G +SRA++ VIRRAADAITNLA
Sbjct:   125 KGSAFALGLLAIKPEYQKLIVDKGALPHLVNLLKRNKDGSSSRAVNSVIRRAADAITNLA 184

Query:   180 HENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPT 239
             HEN++IKTRVRVE GIPPLVELL+F D KVQRAAAGALRTLAFKND+NK  IVECNALPT
Sbjct:   185 HENSSIKTRVRVEGGIPPLVELLEFSDSKVQRAAAGALRTLAFKNDDNKNQIVECNALPT 244

Query:   240 LVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAAL 299
             L+LML SEDA++H+EAVGVIGNLVHSSP IKKEV+ AGALQPVIGLLSS C ES+REAAL
Sbjct:   245 LILMLGSEDAAIHYEAVGVIGNLVHSSPHIKKEVLTAGALQPVIGLLSSCCPESQREAAL 304

Query:   300 LLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQD 359
             LLGQFA+ DS+ KVHIVQRGAVRPLIEMLQSPD QLKEMSAFALGRLAQD HNQAGIA  
Sbjct:   305 LLGQFASTDSDCKVHIVQRGAVRPLIEMLQSPDVQLKEMSAFALGRLAQDAHNQAGIAHS 364

Query:   360 GGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDC 419
             GG+ PLLKLLDS+NGSLQHNAAFALYGLADNEDNV+D +RVGG+QKLQDGEF VQ TKDC
Sbjct:   365 GGLGPLLKLLDSRNGSLQHNAAFALYGLADNEDNVSDFIRVGGIQKLQDGEFIVQATKDC 424

Query:   420 VARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPDDCKTIFIDXXXXXX 479
             V++TLKRLEEK+HGRVL HLLYL+R+++++++RRV LALAHLC+P+D +TIFID      
Sbjct:   425 VSKTLKRLEEKIHGRVLRHLLYLMRISEKSIQRRVALALAHLCSPEDQRTIFIDDNGLEL 484

Query:   480 XXXXXXSTSVKQREESSVALYKLATKATSLSPMDAAPPSPTQQVYLGEQFVNNPTLSDVT 539
                   S + KQ+ + + ALYKLA K+ +LSP+DAAPPSPTQ+VYLGEQ+VNN TLSDVT
Sbjct:   485 LLGLLGSLNTKQQLDGAAALYKLANKSMALSPVDAAPPSPTQRVYLGEQYVNNATLSDVT 544

Query:   540 FVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFIYTGNV 599
             F+VEG+ FYAHRICLLASSDAFRAMFDGGY+EK+A+D+EIPNI+W VFELMMRFIYTG+V
Sbjct:   545 FLVEGRTFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIKWEVFELMMRFIYTGSV 604

Query:   600 DVSVDIAQDLLRAADQYLLEGLKRLCEYSIAQIISVENIMLMYELSEAYNATTLKQSCIL 659
             D++ +I++DLLRAADQYLLEGLKRLCEY+IAQ I++E+I  MYELSEA++A +L+Q+CI+
Sbjct:   605 DITNEISKDLLRAADQYLLEGLKRLCEYTIAQDITLESIGDMYELSEAFHAMSLRQACIM 664

Query:   660 FILEKFDKMRNKPWFFRLIRCVLPEIRNYFTKAFS 694
             FILE FDK+ + PW   L++  +PEIR YF +A +
Sbjct:   665 FILEHFDKLSSMPWQNELVQRTIPEIREYFCRALT 699

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;IMP

GO:0010187 "negative regulation of seed germination" evidence=IMP

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA

TAIR|locus:2179842 ABAP1 "ARMADILLO BTB protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 2123 (752.4 bits), Expect = 7.9e-220, P = 7.9e-220
 Identities = 422/697 (60%), Positives = 535/697 (76%)

Query:     3 RRERQTSPARRSLKRKLEQDFEEKPDRKVSIVESGATQQDLVQDIRAQIDILNSKFSSDE 62
             +R+R T  A R+LKRKL  + +  P     +++      DLV  IR  +++LNS FS  +
Sbjct:    34 KRQRTTRLAARNLKRKLSHNTDGAPI-VTQLIDIDDEPIDLVVAIRRHVEVLNSSFSDPD 92

Query:    63 TDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLT-NAQIPYEHEVEKE 121
              D  A K A+  + + AK +E V +IV+NGA+PALV +L++P  +  N     EH++EK+
Sbjct:    93 FDHEAVKEAAADIADLAKIDENVEIIVENGAIPALVRYLESPLVVCGNVPKSCEHKLEKD 152

Query:   122 CAFALGLLA-VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAH 180
             CA ALGL+A ++P +QQ+IVD GA+   V LLK+    G     + VIRRAAD ITN+AH
Sbjct:   153 CALALGLIAAIQPGYQQLIVDAGAIVPTVKLLKRRGECGECMFANAVIRRAADIITNIAH 212

Query:   181 ENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTL 240
             +N  IKT +RVE GI PLVELL F DVKVQRAAAGALRT++F+NDENK  IVE NALPTL
Sbjct:   213 DNPRIKTNIRVEGGIAPLVELLNFPDVKVQRAAAGALRTVSFRNDENKSQIVELNALPTL 272

Query:   241 VLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALL 300
             VLML+S+D++VH EA+G IGNLVHSSP IKKEVI AGALQPVIGLLSS+C E++REAALL
Sbjct:   273 VLMLQSQDSTVHGEAIGAIGNLVHSSPDIKKEVIRAGALQPVIGLLSSTCLETQREAALL 332

Query:   301 LGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDG 360
             +GQFAA DS+ KVHI QRGA+ PLI+ML+S D Q+ EMSAFALGRLAQD HNQAGIA  G
Sbjct:   333 IGQFAAPDSDCKVHIAQRGAITPLIKMLESSDEQVVEMSAFALGRLAQDAHNQAGIAHRG 392

Query:   361 GILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCV 420
             GI+ LL LLD K GS+QHNAAFALYGLADNE+NVAD ++ GG+QKLQD  FTVQPT+DCV
Sbjct:   393 GIISLLNLLDVKTGSVQHNAAFALYGLADNEENVADFIKAGGIQKLQDDNFTVQPTRDCV 452

Query:   421 ARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPDDCKTIFIDXXXXXXX 480
              RTLKRL+ K+HG VLN LLYL+R A++ V+ R+ LALAHLC P D K IFID       
Sbjct:   453 VRTLKRLQNKIHGPVLNQLLYLMRTAEKTVQIRIALALAHLCDPKDGKLIFIDNNGVEFL 512

Query:   481 XXXXXSTSVKQREESSVALYKLATKATSLSPMDAAPPSPTQQVYLGEQFVNNPTLSDVTF 540
                   +S KQ+  SS ALY+LA KATS +P D+AP SPTQQV+LGE+FVNNPT+SDVTF
Sbjct:   513 LELLYFSSNKQQRYSSSALYELAKKATSFAPEDSAPCSPTQQVFLGEKFVNNPTMSDVTF 572

Query:   541 VVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFIYTGNVD 600
             +++GKQFYAH+I L+ASSD FRAMFDG YKE+NA++VEIPNIRW VFELMM+FIY+G ++
Sbjct:   573 LIDGKQFYAHKIGLVASSDIFRAMFDGLYKERNAQNVEIPNIRWEVFELMMKFIYSGRIN 632

Query:   601 VSVDIAQDLLRAADQYLLEGLKRLCEYSIAQIISVENIMLMYELSEAYNATTLKQSCILF 660
             ++  +A+DLL AADQYLLEGLKR CEY+IAQ I ++NI  MYEL++ +NA+ L+++C LF
Sbjct:   633 IAKHLAKDLLVAADQYLLEGLKRQCEYTIAQEICLDNIPEMYELADTFNASALRRACTLF 692

Query:   661 ILEKFDKMRNKPWFFRLIRCVLPEIRNYFTKAFSNPV 697
             +LE F K+ ++ WF + ++ ++PEIR+Y T   + PV
Sbjct:   693 VLEHFTKLSSQLWFAKFVKQIIPEIRSYMTDILTRPV 729

GO:0009507 "chloroplast" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0006261 "DNA-dependent DNA replication" evidence=TAS

GO:0008285 "negative regulation of cell proliferation" evidence=IMP

GO:0031261 "DNA replication preinitiation complex" evidence=IDA

GO:0042127 "regulation of cell proliferation" evidence=IMP

GO:2000104 "negative regulation of DNA-dependent DNA replication" evidence=IMP

SGD|S000000739 VAC8 "Phosphorylated and palmitoylated vacuolar membrane protein" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 284 (105.0 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 104/355 (29%), Positives = 171/355 (48%)

Query:   122 CAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHE 181
             CA ALG LAV  E++ +IV+ G L  L++ +     G N      V   A   ITNLA  
Sbjct:   106 CA-ALGNLAVNNENKLLIVEMGGLEPLINQMM----GDNVE----VQCNAVGCITNLATR 156

Query:   182 NANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLV 241
             + N K ++     + PL +L K   ++VQR A GAL  +   ++EN+K +V   A+P LV
Sbjct:   157 DDN-KHKIATSGALIPLTKLAKSKHIRVQRNATGALLNMTH-SEENRKELVNAGAVPVLV 214

Query:   242 LMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGAL-QPVIGLLSSSCSESKREAALL 300
              +L S D  V +     + N+     + KK       L   ++ L+ S  S  K +A L 
Sbjct:   215 SLLSSTDPDVQYYCTTALSNIAVDEANRKKLAQTEPRLVSKLVSLMDSPSSRVKCQATLA 274

Query:   301 LGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDG 360
             L   A+ D++ ++ IV+ G +  L++++QS    L   S   +  ++    N+ G+  D 
Sbjct:   275 LRNLAS-DTSYQLEIVRAGGLPHLVKLIQSDSIPLVLASVACIRNISIHPLNE-GLIVDA 332

Query:   361 GIL-PLLKLLDSKNGS-LQHNAAFALYGLA-DNEDNVADLVRVGGVQKLQ----DGEFTV 413
             G L PL++LLD K+   +Q +A   L  LA  +E N  +    G V+K +    D   +V
Sbjct:   333 GFLKPLVRLLDYKDSEEIQCHAVSTLRNLAASSEKNRKEFFESGAVEKCKELALDSPVSV 392

Query:   414 QPT-KDCVA----RTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCA 463
             Q     C A      + +L+  +   +L+ L+ +    ++ V      ALA+LC+
Sbjct:   393 QSEISACFAILALADVSKLD-LLEANILDALIPMTFSQNQEVSGNAAAALANLCS 446

GO:0042144 "vacuole fusion, non-autophagic" evidence=IMP

GO:0043495 "protein anchor" evidence=IMP;IPI

GO:0071562 "nucleus-vacuole junction assembly" evidence=IMP

GO:0071561 "nucleus-vacuole junction" evidence=IDA;IPI

GO:0000011 "vacuole inheritance" evidence=IEA;IMP

GO:0071255 "CVT vesicle assembly" evidence=IMP

GO:0016236 "macroautophagy" evidence=IMP

GO:0034727 "piecemeal microautophagy of nucleus" evidence=IMP

GO:0000329 "fungal-type vacuole membrane" evidence=IDA

GO:0071563 "Myo2p-Vac17p-Vac8p transport complex" evidence=IDA;IPI

GO:0005774 "vacuolar membrane" evidence=IEA

GO:0005773 "vacuole" evidence=IEA

GO:0016020 "membrane" evidence=IEA

FB|FBgn0264711 CG43980 [Drosophila melanogaster (taxid:7227)]

 Score = 288 (106.4 bits), Expect = 1.9e-21, P = 1.9e-21
 Identities = 63/162 (38%), Positives = 99/162 (61%)

Query:   508 SLSPMDAAPP-SPTQQVYLGEQFVNNPTLSDVTFVVEGKQFYAHRICLLASSDAFRAMFD 566
             +L P+   PP  P Q   +  +FVNNP LSDVTF VEGK FY H+I L+ +S  F++M  
Sbjct:  1103 TLPPVKEQPPMQPVQGSRIDPKFVNNPELSDVTFRVEGKIFYGHKIVLVTASPRFQSMLS 1162

Query:   567 GGYKE-KNAKDVEIPNIRWNVFELMMRFIYTGNVDVSVDIAQ----DLLRAADQYLLEGL 621
                 E  +   V+I +IR+++F+L+M+F+Y G    S+D+A     +L+ AA  + LEGL
Sbjct:  1163 SKLSEGSSTPTVQINDIRYHIFQLVMQFLYCGGCS-SLDVAHGDVLELMAAASFFQLEGL 1221

Query:   622 KRLCEYSIAQIISVENIMLMYELSEAYNATTLKQSCILFILE 663
              R  E   ++++ V+N++ MY  ++ YNA  L + C  F+L+
Sbjct:  1222 LRYTEARCSEMVDVDNVVAMYIHAKVYNANRLLEFCQCFLLQ 1263

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0046982 "protein heterodimerization activity" evidence=IEA

ASPGD|ASPL0000008980 AN12408 [Emericella nidulans (taxid:162425)]

 Score = 279 (103.3 bits), Expect = 3.8e-21, P = 3.8e-21
 Identities = 91/295 (30%), Positives = 147/295 (49%)

Query:   117 EVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAIT 176
             EV++  + ALG LAV  +++ +IV   AL  L  L+KQ  +         V   A   IT
Sbjct:   121 EVQRAASAALGNLAVNADNKVLIV---ALGGLAPLIKQMMSPNVE-----VQCNAVGCIT 172

Query:   177 NLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNA 236
             NLA    N K ++     + PL+ L K  D++VQR A GAL  +   +D+N++ +V   A
Sbjct:   173 NLATHEDN-KAKIARSGALGPLIRLAKSKDMRVQRNATGALLNMTH-SDDNRQQLVNAGA 230

Query:   237 LPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGAL-QPVIGLLSSSCSESKR 295
             +P LV +L S D  V +     + N+   + + K+       L Q ++ L+ SS  + + 
Sbjct:   231 IPVLVQLLSSSDVDVQYYCTTALSNIAVDASNRKRLAQTESRLVQSLVHLMDSSTPKVQC 290

Query:   296 EAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAG 355
             +AAL L   A+ D   ++ IV+   + PL+ +LQS    L   +   +  ++    N++ 
Sbjct:   291 QAALALRNLAS-DEKYQLEIVRAKGLPPLLRLLQSSYLPLILSAVACIRNISIHPLNESP 349

Query:   356 IAQDGGILPLLKLLDSK-NGSLQHNAAFALYGLADNEDNVADLV-RVGGVQKLQD 408
             I   G + PL+ LL S  N  +Q +A   L  LA + D   +LV + G VQK +D
Sbjct:   350 IIDAGFLKPLVDLLGSTDNEEIQCHAISTLRNLAASSDRNKELVLQAGAVQKCKD 404

GO:0000329 "fungal-type vacuole membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0000011 "vacuole inheritance" evidence=IEA

CGD|CAL0001835 VAC8 [Candida albicans (taxid:5476)]

 Score = 265 (98.3 bits), Expect = 1.4e-19, P = 1.4e-19
 Identities = 105/363 (28%), Positives = 172/363 (47%)

Query:   115 EHEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADA 174
             + EV++    ALG LAV  E++ +IV+ G L  L+  +        S  +  V   A   
Sbjct:   100 DSEVQRAACGALGNLAVNTENKILIVEMGGLEPLIRQMM-------STNIE-VQCNAVGC 151

Query:   175 ITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVEC 234
             ITNLA ++ N K+++     + PL +L K  D++VQR A GAL  +     EN++ +V  
Sbjct:   152 ITNLATQDDN-KSKIAKSGALIPLTKLAKSKDIRVQRNATGALLNMTHSG-ENRQELVNA 209

Query:   235 NALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKK----EVILAGALQPVIGLLSSSC 290
              A+P LV +L +EDA V +     + N+     + KK    E  L G L   + L+ S  
Sbjct:   210 GAVPVLVSLLSNEDADVQYYCTTALSNIAVDEVNRKKLASTEPKLVGQL---VHLMDSPS 266

Query:   291 SESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDT 350
                + +A L L   A+ DS  +V IV+ G +  L+++L      L   +   +  ++   
Sbjct:   267 PRVQCQATLALRNLAS-DSGYQVEIVRAGGLPHLVQLLTCNHQPLVLAAVACIRNISIHP 325

Query:   351 HNQAGIAQDGGILPLLKLLD-SKNGSLQHNAAFALYGLA-DNEDNVADLVRVGGVQKLQD 408
              N+A I + G + PL+ LLD + +  +Q +A   L  LA  +E N   L+  G V K ++
Sbjct:   326 LNEALIIEAGFLKPLVGLLDYTDSEEIQCHAVSTLRNLAASSEKNRTALLAAGAVDKCKE 385

Query:   409 ----GEFTVQPT-KDCVA--RTLKRLEEKVH-GRVLNHLLYLLRVADRAVKRRVTLALAH 460
                    TVQ     C A       L+ K++   +++ L+ L    +  V      ALA+
Sbjct:   386 LVLKVPLTVQSEISACFAILALADDLKPKLYESHIIDVLIPLTFSENGEVCGNSAAALAN 445

Query:   461 LCA 463
             LC+
Sbjct:   446 LCS 448

GO:0000011 "vacuole inheritance" evidence=ISS;IMP

GO:0030448 "hyphal growth" evidence=IMP

GO:0000324 "fungal-type vacuole" evidence=ISS

GO:0000329 "fungal-type vacuole membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0071563 "Myo2p-Vac17p-Vac8p transport complex" evidence=IEA

GO:0071561 "nucleus-vacuole junction" evidence=IEA

GO:0043495 "protein anchor" evidence=IEA

GO:0071216 "cellular response to biotic stimulus" evidence=IMP

GO:0030447 "filamentous growth" evidence=IMP

GO:0036180 "filamentous growth of a population of unicellular organisms in response to biotic stimulus" evidence=IMP

GO:0071562 "nucleus-vacuole junction assembly" evidence=IEA

GO:0071255 "CVT vesicle assembly" evidence=IEA

GO:0042144 "vacuole fusion, non-autophagic" evidence=IEA

GO:0016236 "macroautophagy" evidence=IEA

UNIPROTKB|Q59MN0 VAC8 "Vacuolar protein 8" [Candida albicans SC5314 (taxid:237561)]

 Score = 265 (98.3 bits), Expect = 1.4e-19, P = 1.4e-19
 Identities = 105/363 (28%), Positives = 172/363 (47%)

Query:   115 EHEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADA 174
             + EV++    ALG LAV  E++ +IV+ G L  L+  +        S  +  V   A   
Sbjct:   100 DSEVQRAACGALGNLAVNTENKILIVEMGGLEPLIRQMM-------STNIE-VQCNAVGC 151

Query:   175 ITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVEC 234
             ITNLA ++ N K+++     + PL +L K  D++VQR A GAL  +     EN++ +V  
Sbjct:   152 ITNLATQDDN-KSKIAKSGALIPLTKLAKSKDIRVQRNATGALLNMTHSG-ENRQELVNA 209

Query:   235 NALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKK----EVILAGALQPVIGLLSSSC 290
              A+P LV +L +EDA V +     + N+     + KK    E  L G L   + L+ S  
Sbjct:   210 GAVPVLVSLLSNEDADVQYYCTTALSNIAVDEVNRKKLASTEPKLVGQL---VHLMDSPS 266

Query:   291 SESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDT 350
                + +A L L   A+ DS  +V IV+ G +  L+++L      L   +   +  ++   
Sbjct:   267 PRVQCQATLALRNLAS-DSGYQVEIVRAGGLPHLVQLLTCNHQPLVLAAVACIRNISIHP 325

Query:   351 HNQAGIAQDGGILPLLKLLD-SKNGSLQHNAAFALYGLA-DNEDNVADLVRVGGVQKLQD 408
              N+A I + G + PL+ LLD + +  +Q +A   L  LA  +E N   L+  G V K ++
Sbjct:   326 LNEALIIEAGFLKPLVGLLDYTDSEEIQCHAVSTLRNLAASSEKNRTALLAAGAVDKCKE 385

Query:   409 ----GEFTVQPT-KDCVA--RTLKRLEEKVH-GRVLNHLLYLLRVADRAVKRRVTLALAH 460
                    TVQ     C A       L+ K++   +++ L+ L    +  V      ALA+
Sbjct:   386 LVLKVPLTVQSEISACFAILALADDLKPKLYESHIIDVLIPLTFSENGEVCGNSAAALAN 445

Query:   461 LCA 463
             LC+
Sbjct:   446 LCS 448

GO:0000011 "vacuole inheritance" evidence=ISS;IMP

GO:0000324 "fungal-type vacuole" evidence=ISS

GO:0030447 "filamentous growth" evidence=IMP

GO:0030448 "hyphal growth" evidence=IMP

GO:0036180 "filamentous growth of a population of unicellular organisms in response to biotic stimulus" evidence=IMP

GO:0071216 "cellular response to biotic stimulus" evidence=IMP

UNIPROTKB|E1BWB8 E1BWB8 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 270 (100.1 bits), Expect = 2.4e-19, Sum P(2) = 2.4e-19
 Identities = 63/187 (33%), Positives = 107/187 (57%)

Query:   499 LYKLATKATSLSPMDAAPP-SPTQQVYLGEQFVNNPTLSDVTFVVEGKQFYAHRICLLAS 557
             L  + T     SP+ + P    T    L   F+NN  +SDVTF+VEGK FYAH++ L+ +
Sbjct:   807 LASIFTHCYGSSPIPSIPEIHKTLPARLDPHFLNNKEMSDVTFLVEGKLFYAHKVLLVTA 866

Query:   558 SDAFRAMFDGG--YKEKNAKDVEIPNIRWNVFELMMRFIYTGNVDVSVDIAQ----DLLR 611
             S+ F+ +      +    +K VEI ++++N+F+++M+++Y G  + S++I      +LL 
Sbjct:   867 SNRFKTLMTNKTEHDSHGSKTVEISDMKYNIFKMLMQYLYYGGTE-SMEIPTTDILELLS 925

Query:   612 AADQYLLEGLKRLCEYSIAQIISVENIMLMYELSEAYNATTLKQSCILFILEKFDKMRNK 671
             AA  + L+GL+R CE   AQ IS+EN + +Y+ ++ +NA  L   C  F L+    +  +
Sbjct:   926 AASLFQLDGLQRHCEILCAQTISMENSVSIYKYAKIHNAPELAAFCEGFFLKHMSSLLEQ 985

Query:   672 PWFFRLI 678
               F +LI
Sbjct:   986 DSFRQLI 992

GO:0046982 "protein heterodimerization activity" evidence=IEA

POMBASE|SPBC354.14c vac8 "vacuolar protein Vac8 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 253 (94.1 bits), Expect = 2.5e-18, P = 2.5e-18
 Identities = 109/410 (26%), Positives = 187/410 (45%)

Query:    40 QQDLVQDIRAQIDILNS-KFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALV 98
             +++ V D+ + ++  N   F S+E  RA    A    ++  ++  +    +    V   V
Sbjct:    24 EREAVADLLSFLEDRNEVNFYSEEPLRALTILAYSDNLDLQRSAALAFAEITEKDVRE-V 82

Query:    99 EHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNG 158
             +     P L   Q P + E+++  + ALG LAV  E++ ++V    L  L+  +      
Sbjct:    83 DRETIEPVLFLLQSP-DAEIQRAASVALGNLAVNAENKALVVKLNGLDLLIRQMM----- 136

Query:   159 GNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALR 218
               S  +  V   A   ITNLA  + N K+++     + PL  L K  D++VQR A GAL 
Sbjct:   137 --SPHVE-VQCNAVGCITNLATLDEN-KSKIAHSGALGPLTRLAKSKDIRVQRNATGALL 192

Query:   219 TLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNL----VHSSPSIKKEVI 274
              +     EN++ +V    +P LV +L S D  V +     I N+    VH     + E  
Sbjct:   193 NMTHSY-ENRQQLVSAGTIPVLVSLLPSSDTDVQYYCTTSISNIAVDAVHRKRLAQSEPK 251

Query:   275 LAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQ 334
             L  +L   I L+ +S  + + +AAL L   A+ D   ++ IVQ  A+  L+ +L+S    
Sbjct:   252 LVRSL---IQLMDTSSPKVQCQAALALRNLAS-DERYQIEIVQSNALPSLLRLLRSSYLP 307

Query:   335 LKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLD-SKNGSLQHNAAFALYGLA-DNED 392
             L   S   +  ++    N++ I   G + PL+ LL  ++N  +Q +A   L  LA  +E 
Sbjct:   308 LILASVACIRNISIHPLNESPIIDAGFLRPLVDLLSCTENEEIQCHAVSTLRNLAASSER 367

Query:   393 NVADLVRVGGVQKLQ----DGEFTVQPTKD-CVARTLKRLEEKVHGRVLN 437
             N   ++    +QKL+    D   +VQ     C+A  +  L ++    +LN
Sbjct:   368 NKRAIIEANAIQKLRCLILDAPVSVQSEMTACLA--VLALSDEFKSYLLN 415

GO:0000011 "vacuole inheritance" evidence=ISO

GO:0000139 "Golgi membrane" evidence=IEA

GO:0000324 "fungal-type vacuole" evidence=ISO

GO:0000329 "fungal-type vacuole membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0016236 "macroautophagy" evidence=ISO

GO:0042144 "vacuole fusion, non-autophagic" evidence=ISO

GO:0043234 "protein complex" evidence=NAS

GO:0043495 "protein anchor" evidence=ISO

GO:0071255 "CVT vesicle assembly" evidence=ISO

UNIPROTKB|F1SGS8 ABTB2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 262 (97.3 bits), Expect = 6.1e-18, Sum P(3) = 6.1e-18
 Identities = 66/200 (33%), Positives = 115/200 (57%)

Query:   489 VKQREESSVALYKLATKATSL---SPMDAAPP-SPTQQVYLGEQFVNNPTLSDVTFVVEG 544
             +K  +  SV + +LAT  T     SP+ + P    T    L   F+NN  +SDVTF+VEG
Sbjct:   795 LKTSKNDSV-IQQLATIFTHCYGSSPIPSIPELRKTLPARLDPHFLNNKEMSDVTFLVEG 853

Query:   545 KQFYAHRICLLASSDAFRAMFDGGYKEK--NAKDVEIPNIRWNVFELMMRFIYTGNVDVS 602
             K FYAH++ L+ +S+ F+ +     ++   ++K +EI ++++++F++MMR++Y G  + S
Sbjct:   854 KLFYAHKVLLVTASNRFKTLMTNKSEQDGDSSKTIEISDMKYHIFQMMMRYLYYGGTE-S 912

Query:   603 VDIAQ----DLLRAADQYLLEGLKRLCEYSIAQIISVENIMLMYELSEAYNATTLKQSCI 658
             +DI      +LL AA  + L+ L+R CE   +Q +SVE+ +  Y+ ++ +NA  L   C 
Sbjct:   913 MDIPTGDILELLSAASLFQLDALQRHCEILCSQTLSVESAVSTYKYAKIHNAPELALFCE 972

Query:   659 LFILEKFDKMRNKPWFFRLI 678
              F L+    +  +  F +LI
Sbjct:   973 GFFLKHMKALLEQDSFRQLI 992

GO:0046982 "protein heterodimerization activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B9DHT4	ARIA_ARATH	No assigned EC number	0.7165	0.9829	0.9746	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	704
pfam00651	101	pfam00651, BTB, BTB/POZ domain	7e-24
smart00225	97	smart00225, BTB, Broad-Complex, Tramtrack and Bric	4e-22
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	5e-22
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	2e-20
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	3e-15
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	3e-15
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	2e-13
PHA03098	534	PHA03098, PHA03098, kelch-like protein; Provisiona	4e-13
COG5064	526	COG5064, SRP1, Karyopherin (importin) alpha [Intra	5e-13
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	5e-10
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	2e-09
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	3e-09
COG5064	526	COG5064, SRP1, Karyopherin (importin) alpha [Intra	3e-09
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	3e-09
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	4e-08
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	6e-08
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	2e-07
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	5e-07
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	5e-07
COG5064	526	COG5064, SRP1, Karyopherin (importin) alpha [Intra	4e-06
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	5e-06
COG1413	335	COG1413, COG1413, FOG: HEAT repeat [Energy product	6e-06
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	3e-05
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	2e-04
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	5e-04
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	7e-04
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	8e-04
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	0.002
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	0.003

>gnl|CDD|216043 pfam00651, BTB, BTB/POZ domain

 Score = 96.1 bits (240), Expect = 7e-24
 Identities = 35/105 (33%), Positives = 56/105 (53%), Gaps = 5/105 (4%)

Query: 525 LGEQFVNNPTLSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRW 584
           L E    N  L DVT VV  K+F+AH+  L A S  F+A+F G  + +    + + ++  
Sbjct: 1   LNELR-ENGELCDVTLVVGDKEFHAHKAVLAACSPYFKALFTGNKEVE----ITLEDVSP 55

Query: 585 NVFELMMRFIYTGNVDVSVDIAQDLLRAADQYLLEGLKRLCEYSI 629
             FE ++ FIYTG ++++ +   DLL  AD+  +  L   CE  +
Sbjct: 56  EDFEALLEFIYTGKLEITEENVDDLLALADKLQIPALIDKCEEFL 100

The BTB (for BR-C, ttk and bab) or POZ (for Pox virus and Zinc finger) domain is present near the N-terminus of a fraction of zinc finger (pfam00096) proteins and in proteins that contain the pfam01344 motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT. The POZ or BTB domain is also known as BR-C/Ttk or ZiN. Length = 101

>gnl|CDD|197585 smart00225, BTB, Broad-Complex, Tramtrack and Bric a brac

 Score = 90.8 bits (226), Expect = 4e-22
 Identities = 33/97 (34%), Positives = 58/97 (59%)

Query: 537 DVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFIYT 596
           DVT VV GK+F+AH+  L A S  F+A+F   +KE +  ++ + ++    F  ++ F+YT
Sbjct: 1   DVTLVVGGKKFHAHKAVLAAHSPYFKALFSSDFKESDKSEIYLDDVSPEDFRALLNFLYT 60

Query: 597 GNVDVSVDIAQDLLRAADQYLLEGLKRLCEYSIAQII 633
           G +D+  +  ++LL  AD   + GL  LCE  + +++
Sbjct: 61  GKLDLPEENVEELLELADYLQIPGLVELCEEFLLKLL 97

Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures. Length = 97

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 91.6 bits (228), Expect = 5e-22
 Identities = 43/118 (36%), Positives = 61/118 (51%)

Query: 189 VRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSED 248
           V    G+P LV LL   D  VQR AA AL  L+  N++N + +VE   LP LV +L+SED
Sbjct: 3   VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSED 62

Query: 249 ASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAA 306
             V   A+  + NL       K  V+ AG +  ++ LL SS  + ++ A   L   A+
Sbjct: 63  EEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 87.0 bits (216), Expect = 2e-20
 Identities = 45/127 (35%), Positives = 67/127 (52%), Gaps = 8/127 (6%)

Query: 137 QIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIP 196
           + ++  G LP LVSLL          +   V R AA A++NL+  N +    V    G+P
Sbjct: 1   EAVIQAGGLPALVSLLS--------SSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLP 52

Query: 197 PLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAV 256
            LV+LLK  D +V +AA  ALR LA   ++NK +++E   +P LV +L S +  +   A 
Sbjct: 53  ALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNAT 112

Query: 257 GVIGNLV 263
           G + NL 
Sbjct: 113 GALSNLA 119

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 72.0 bits (177), Expect = 3e-15
 Identities = 40/114 (35%), Positives = 66/114 (57%), Gaps = 1/114 (0%)

Query: 272 EVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSP 331
            VI AG L  ++ LLSSS    +REAA  L   +A ++++   +V+ G +  L+++L+S 
Sbjct: 2   AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE 61

Query: 332 DSQLKEMSAFALGRLAQD-THNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFAL 384
           D ++ + + +AL  LA     N+  + + GG+  L+ LLDS N  +Q NA  AL
Sbjct: 62  DEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGAL 115

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 72.0 bits (177), Expect = 3e-15
 Identities = 43/136 (31%), Positives = 65/136 (47%), Gaps = 19/136 (13%)

Query: 87  LIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAV-KPEHQQIIVDTGAL 145
            ++  G +PALV  L +           +  V++E A+AL  L+    ++ Q +V+ G L
Sbjct: 2   AVIQAGGLPALVSLLSSS----------DENVQREAAWALSNLSAGNNDNIQAVVEAGGL 51

Query: 146 PHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFV 205
           P LV LLK      +      V++ A  A+ NLA    + K  V    G+P LV LL   
Sbjct: 52  PALVQLLKS----EDEE----VVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSS 103

Query: 206 DVKVQRAAAGALRTLA 221
           +  +Q+ A GAL  LA
Sbjct: 104 NEDIQKNATGALSNLA 119

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 67.0 bits (164), Expect = 2e-13
 Identities = 34/119 (28%), Positives = 59/119 (49%)

Query: 230 LIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSS 289
            +++   LP LV +L S D +V  EA   + NL   +    + V+ AG L  ++ LL S 
Sbjct: 2   AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE 61

Query: 290 CSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQ 348
             E  + A   L   AA   ++K+ +++ G V  L+ +L S +  +++ +  AL  LA 
Sbjct: 62  DEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional

 Score = 72.1 bits (177), Expect = 4e-13
 Identities = 38/140 (27%), Positives = 71/140 (50%), Gaps = 4/140 (2%)

Query: 538 VTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFIYTG 597
           +  V  G     H+I L +SS+ F+ MF   +KE    ++ + NI ++ F  ++++IYTG
Sbjct: 14  IIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFKEN---EINL-NIDYDSFNEVIKYIYTG 69

Query: 598 NVDVSVDIAQDLLRAADQYLLEGLKRLCEYSIAQIISVENIMLMYELSEAYNATTLKQSC 657
            ++++ +  +D+L  A+  +++ L  LC   I +II   N + +Y  S  Y    L  + 
Sbjct: 70  KINITSNNVKDILSIANYLIIDFLINLCINYIIKIIDDNNCIDIYRFSFFYGCKKLYSAA 129

Query: 658 ILFILEKFDKMRNKPWFFRL 677
             +I    + + N P F  L
Sbjct: 130 YNYIRNNIELIYNDPDFIYL 149

Length = 534

>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion]

 Score = 71.5 bits (175), Expect = 5e-13
 Identities = 70/289 (24%), Positives = 128/289 (44%), Gaps = 21/289 (7%)

Query: 87  LIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAV-KPEHQQIIVDTGAL 145
           ++VD GAVP  ++ L +           E +V ++  +ALG +A      +  ++  GAL
Sbjct: 152 VVVDAGAVPLFIQLLSST----------EDDVREQAVWALGNIAGDSEGCRDYVLQCGAL 201

Query: 146 PHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFV 205
             L+ LL       ++  +S ++R A   ++NL            +   +P L +L+   
Sbjct: 202 EPLLGLLLS-----SAIHIS-MLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSR 255

Query: 206 DVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHS 265
           D +V   A  A+  L+   +E  + +++      LV +L  E A +   A+  +GN+V  
Sbjct: 256 DPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTG 315

Query: 266 SPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLI 325
           S    + +I  GAL+    LLSS     ++EA   +    A ++     ++    + PLI
Sbjct: 316 SDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLI 375

Query: 326 EMLQSPDSQLKEMSAFALGRLAQDTHNQAGI----AQDGGILPLLKLLD 370
            +L S + ++K+ + +A+        N+  I       G I PL  LLD
Sbjct: 376 HLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLD 424

Length = 526

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 62.8 bits (153), Expect = 5e-10
 Identities = 78/261 (29%), Positives = 122/261 (46%), Gaps = 25/261 (9%)

Query: 119 EKECAFA--LGLLAVKPEHQQII-VDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAI 175
           EKE   A  L L   + E ++ I   + A+P LVSLL+   +G       G    AA  +
Sbjct: 31  EKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLR---SGT-----LGAKVNAAAVL 82

Query: 176 TNLAHENANIKTRVRVEDG--IPPLVELLKFVDVKVQRAAAGALRTLA---FKNDENKKL 230
             L  E      RV+V  G  IPPL+ LLK    + Q+AAA A+  ++     +    K+
Sbjct: 83  GVLCKEE---DLRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKI 139

Query: 231 IVECNALPTLVLMLRS---EDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLS 287
                 +P+L   L+    +D  V     G + NL  S+       + AG +  ++ LLS
Sbjct: 140 FSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLS 199

Query: 288 SSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEML-QSPDSQLKEMSAFALGRL 346
           S  S+++  AA LL +   A  +S   ++  GAV+ L+++L Q  +  ++  +A AL  L
Sbjct: 200 SGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEAL 259

Query: 347 -AQDTHNQAGIAQDGGILPLL 366
            +Q    +  IA  GGI P L
Sbjct: 260 SSQSKEAKQAIADAGGI-PAL 279

Length = 2102

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 60.5 bits (147), Expect = 2e-09
 Identities = 77/313 (24%), Positives = 128/313 (40%), Gaps = 52/313 (16%)

Query: 117 EVEKECAFA-LGLLAVK-PEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADA 174
           E ++E A A L +L  +  E +  I   G +P LV LL+     G+ +A       +A  
Sbjct: 460 EQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLET----GSQKA----KEDSATV 511

Query: 175 ITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKND--------- 225
           + NL   + +I+  V     +P L+ LLK    K Q  AA  L  L    D         
Sbjct: 512 LWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTA 571

Query: 226 -------ENKKLIVEC---------------------NALPTLVLMLRSEDASVHFEAVG 257
                  E+K  +++                      +AL TL+ +L S       +A  
Sbjct: 572 LLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAAS 631

Query: 258 VIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQ-FAAADSNSKVHIV 316
           V+ ++  S   + + +     + P I LL+++      ++A  L     +   N KV   
Sbjct: 632 VLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYA 691

Query: 317 QRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSL 376
              A++PLI++ +S   ++ E +  AL  L  D    A    +  ILPL ++L  + G+L
Sbjct: 692 AEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVL--REGTL 749

Query: 377 Q--HNAAFALYGL 387
           +   NAA AL  L
Sbjct: 750 EGKRNAARALAQL 762

Length = 2102

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 55.0 bits (133), Expect = 3e-09
 Identities = 28/94 (29%), Positives = 50/94 (53%), Gaps = 2/94 (2%)

Query: 315 IVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILP-LLKLLDSKN 373
           ++Q G +  L+ +L S D  ++  +A+AL  L+   ++      + G LP L++LL S++
Sbjct: 3   VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSED 62

Query: 374 GSLQHNAAFALYGLADNEDNVADLVRV-GGVQKL 406
             +   A +AL  LA   ++   +V   GGV KL
Sbjct: 63  EEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKL 96

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion]

 Score = 59.9 bits (145), Expect = 3e-09
 Identities = 47/187 (25%), Positives = 86/187 (45%), Gaps = 4/187 (2%)

Query: 195 IPPLVELLKFVDVKV-QRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHF 253
           +P  VE +  +   + Q  AA AL  +A    +  K++V+  A+P  + +L S +  V  
Sbjct: 116 VPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVRE 175

Query: 254 EAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESK--REAALLLGQFAAADSNS 311
           +AV  +GN+   S   +  V+  GAL+P++GLL SS       R A   L       +  
Sbjct: 176 QAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPP 235

Query: 312 KVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILP-LLKLLD 370
                   A+  L +++ S D ++   + +A+  L+   + +     D GI   L++LL 
Sbjct: 236 PDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLS 295

Query: 371 SKNGSLQ 377
            ++  +Q
Sbjct: 296 HESAKIQ 302

Length = 526

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 60.5 bits (147), Expect = 3e-09
 Identities = 58/254 (22%), Positives = 98/254 (38%), Gaps = 42/254 (16%)

Query: 174 AITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVE 233
           A+++L      +   +   +G+  L+ LL     + Q  A   L  L  + DE+K  I  
Sbjct: 427 ALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITA 486

Query: 234 CNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSES 293
              +P LV +L +       ++  V+ NL   S  I+  V  AGA+  ++ LL +   + 
Sbjct: 487 AGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKG 546

Query: 294 KREAALLLGQ----------------FAAADSNSKVH----------------IVQRG-- 319
           +  AA  L +                       SKVH                +V+ G  
Sbjct: 547 QEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSA 606

Query: 320 ---AVRPLIEMLQSPDSQLKEMSAFALGRL---AQDTHNQAGIAQDGGILPLLKLLDSKN 373
              A+R LI++L S   + +E +A  L  +    QD        +   I P +KLL +  
Sbjct: 607 ANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEI--INPCIKLLTNNT 664

Query: 374 GSLQHNAAFALYGL 387
            ++   +A AL  L
Sbjct: 665 EAVATQSARALAAL 678

Length = 2102

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 56.6 bits (137), Expect = 4e-08
 Identities = 53/178 (29%), Positives = 80/178 (44%), Gaps = 13/178 (7%)

Query: 217 LRTLAFKNDENKKLI-VECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVIL 275
           L  LA   +E +K I     A+P LV +LRS        A  V+G L      ++ +V+L
Sbjct: 39  LLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEE-DLRVKVLL 97

Query: 276 AGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHI-----VQRGAVRPLIEMLQS 330
            G + P++ LL S  +E+++ AA  +  +A +      H+        G V  L + LQ 
Sbjct: 98  GGCIPPLLSLLKSGSAEAQKAAAEAI--YAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQP 155

Query: 331 PDSQLKEMSAF---ALGRLAQDTHN-QAGIAQDGGILPLLKLLDSKNGSLQHNAAFAL 384
            + Q K +      AL  L   T    +   + GG+  L+KLL S N   Q NAA  L
Sbjct: 156 GNKQDKVVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLL 213

Length = 2102

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 56.3 bits (136), Expect = 6e-08
 Identities = 89/353 (25%), Positives = 132/353 (37%), Gaps = 71/353 (20%)

Query: 64   DRA-AAKTASHALVEFAKNEEIVSLI-VDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKE 121
            DR  A   A   L + A+  ++  L   + GA+ AL ++L   PQ            E+ 
Sbjct: 1160 DRPGAPPLALGLLTQLAEGSDVNKLAMAEAGALDALTKYLSLGPQ---------DSTEEA 1210

Query: 122  CAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHE 181
             +  L +L   PE ++     GA+  LV++L+    G  S   S     AA A+  L   
Sbjct: 1211 ASELLRILFSSPELRRHESAFGAVNQLVAVLRL---GSRSARYS-----AARALQEL-FS 1261

Query: 182  NANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLI--VECNALPT 239
              +I+        + PLVE+L       Q AA GAL  L+  N      I  VE NAL  
Sbjct: 1262 AEHIRDSELARQAVQPLVEMLNTGSESEQHAAIGALIKLSSGNPSKALAIADVEGNALEN 1321

Query: 240  LVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCS-ESKREAA 298
            L                                            +LSS  S E K +AA
Sbjct: 1322 L------------------------------------------CKILSSDSSLELKEDAA 1339

Query: 299  LLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQ 358
             L       ++  +        + PLI +L S  S  +E    AL RL  D      +A 
Sbjct: 1340 ELCR-VLFTNTRIRSTPAAARCIEPLISLLVSESSTAQEAGVCALDRLLDDEQLAELVAA 1398

Query: 359  DGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVA---DLVRVGGVQKLQD 408
             G ++PL+ L+   N  L   A  AL  L   +D      D+V+ G ++++ D
Sbjct: 1399 HGAVVPLVGLVVGTNYVLHEAAISALIKLG--KDRPPCKLDMVKAGIIERVLD 1449

Length = 2102

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 47.8 bits (115), Expect = 2e-07
 Identities = 16/41 (39%), Positives = 23/41 (56%)

Query: 224 NDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVH 264
           + ENK+ ++E  A+P LV +L S D  V  EA   + NL  
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 53.2 bits (128), Expect = 5e-07
 Identities = 73/313 (23%), Positives = 121/313 (38%), Gaps = 64/313 (20%)

Query: 139  IVDTGALPHLVSLLKQY-KNGGNSRALS---GVIRRAADAITNLAHENANIKTRVRVEDG 194
            + ++GA+  L+SLL     +  N  ALS    ++R              +I+        
Sbjct: 1088 VANSGAVGGLISLLGCAESDISNLVALSEEFSLVRNPDQVALERLFRVEDIRVGATARKA 1147

Query: 195  IPPLVELLKFVDVKVQRA--AAGALRTLAFKNDENKKLIVECNALPTLV--LMLRSEDAS 250
            IP LV+LLK +  +      A G L  LA  +D NK  + E  AL  L   L L  +D++
Sbjct: 1148 IPLLVDLLKPIPDRPGAPPLALGLLTQLAEGSDVNKLAMAEAGALDALTKYLSLGPQDST 1207

Query: 251  VHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSN 310
               EA   +  ++ SSP +++     GA+  ++ +L      ++  AA  L +  +A+  
Sbjct: 1208 E--EAASELLRILFSSPELRRHESAFGAVNQLVAVLRLGSRSARYSAARALQELFSAE-- 1263

Query: 311  SKVHI----VQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQD------- 359
               HI    + R AV+PL+EML +     +  +  AL +L+    ++A    D       
Sbjct: 1264 ---HIRDSELARQAVQPLVEMLNTGSESEQHAAIGALIKLSSGNPSKALAIADVEGNALE 1320

Query: 360  --------------------------------------GGILPLLKLLDSKNGSLQHNAA 381
                                                    I PL+ LL S++ + Q    
Sbjct: 1321 NLCKILSSDSSLELKEDAAELCRVLFTNTRIRSTPAAARCIEPLISLLVSESSTAQEAGV 1380

Query: 382  FALYGLADNEDNV 394
             AL  L D+E   
Sbjct: 1381 CALDRLLDDEQLA 1393

Length = 2102

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 46.3 bits (111), Expect = 5e-07
 Identities = 18/41 (43%), Positives = 25/41 (60%)

Query: 224 NDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVH 264
           +DENK+ +V+   LP LV +L+SED  V  EA   + NL  
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion]

 Score = 49.9 bits (119), Expect = 4e-06
 Identities = 53/253 (20%), Positives = 109/253 (43%), Gaps = 14/253 (5%)

Query: 137 QIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVE-DGI 195
           Q ++D G +P  V  + + +          +   AA A+TN+A      +T+V V+   +
Sbjct: 108 QPVIDAGVVPRFVEFMDEIQR-------DMLQFEAAWALTNIASGTTQ-QTKVVVDAGAV 159

Query: 196 PPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSE--DASVHF 253
           P  ++LL   +  V+  A  AL  +A  ++  +  +++C AL  L+ +L S     S+  
Sbjct: 160 PLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLR 219

Query: 254 EAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKV 313
            A   + NL            ++ AL  +  L+ S   E   +A   +  + +   N K+
Sbjct: 220 NATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAI-SYLSDGPNEKI 278

Query: 314 HIV-QRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILP-LLKLLDS 371
             V   G    L+E+L    ++++  +  ++G +   + +Q  +  + G L     LL S
Sbjct: 279 QAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSS 338

Query: 372 KNGSLQHNAAFAL 384
              +++  A + +
Sbjct: 339 PKENIRKEACWTI 351

Length = 526

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 45.8 bits (109), Expect = 5e-06
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 1/77 (1%)

Query: 428 EEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCA-PDDCKTIFIDNNGLELLLGLLES 486
           E  +    L  L+ LL  +D  V+R    AL++L A  +D     ++  GL  L+ LL+S
Sbjct: 1   EAVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS 60

Query: 487 TSVKQREESSVALYKLA 503
              +  + +  AL  LA
Sbjct: 61  EDEEVVKAALWALRNLA 77

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|224331 COG1413, COG1413, FOG: HEAT repeat [Energy production and conversion]

 Score = 48.4 bits (115), Expect = 6e-06
 Identities = 54/229 (23%), Positives = 91/229 (39%), Gaps = 42/229 (18%)

Query: 278 ALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKE 337
           A   ++ LL       +  AA+ LG+  + +           AV  L E+L   D ++++
Sbjct: 44  AADELLKLLEDEDLLVRLSAAVALGELGSEE-----------AVPLLRELLSDEDPRVRD 92

Query: 338 MSAFALGRLAQDTHNQAGIAQDGGILPLLKLLD-SKNGSLQHNAAFALYGLADNEDNVAD 396
            +A ALG L               + PL++LL+  +N  ++  AA AL  L D E  +  
Sbjct: 93  AAADALGELGDPE----------AVPPLVELLENDENEGVRAAAARALGKLGD-ERALDP 141

Query: 397 LVRVGGVQKLQDGEFTVQ------PTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAV 450
           L     ++ LQD +             D  A   + L E      +  L+ LL   D  V
Sbjct: 142 L-----LEALQDEDSGSAAAALDAALLDVRAAAAEALGELGDPEAIPLLIELLEDEDADV 196

Query: 451 KRRVTLALAHLCAPDDCKTIFIDNNGLELLLGLLESTSVKQREESSVAL 499
           +R    AL  L + +            +LL+  L   S++ R+ + +AL
Sbjct: 197 RRAAASALGQLGSENV--------EAADLLVKALSDESLEVRKAALLAL 237

Length = 335

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 47.4 bits (113), Expect = 3e-05
 Identities = 111/487 (22%), Positives = 186/487 (38%), Gaps = 100/487 (20%)

Query: 33  IVESGATQQDLVQDIRAQIDILNSKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDNG 92
           ++++GA +Q L++       +L     ++ + RA A  A  AL   ++++E    I D G
Sbjct: 227 VLDAGAVKQ-LLK-------LLGQG--NEVSVRAEAAGALEALS--SQSKEAKQAIADAG 274

Query: 93  AVPALVEHLQTPP----QLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALPHL 148
            +PAL+     P     Q   AQ   E+        A+G LA       I    G +  L
Sbjct: 275 GIPALINATVAPSKEFMQGEFAQALQEN--------AMGALA------NI---CGGMSAL 317

Query: 149 VSLLKQYKNGGNSRALSGVIRRAADAITNLAH---------ENANIKTRVRVEDGIPPLV 199
           +  L +      S A        AD +  LA+         E+        +E     LV
Sbjct: 318 ILYLGELSESPRSPA------PIADTLGALAYALMVFDSSAESTRAFDPTVIEQ---ILV 368

Query: 200 ELLKFVDVK-VQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGV 258
           +LLK  D K VQ     AL +L + N    + +    A   LV ++    A V  E +  
Sbjct: 369 KLLKPRDTKLVQERIIEALASL-YGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRA 427

Query: 259 IGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKRE-AALLLGQFAAADSNSKVHIVQ 317
           + +L      + + +     +Q +I LL  S SE ++E A  LL         SK  I  
Sbjct: 428 LSSLCCGKGGLWEALGGREGVQLLISLLGLS-SEQQQEYAVALLAILTDEVDESKWAITA 486

Query: 318 RGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHN-QAGIAQDGGILPLLKLLDSKNGSL 376
            G + PL+++L++   + KE SA  L  L   + + +A +   G +  LL LL  KNG  
Sbjct: 487 AGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLL--KNGGP 544

Query: 377 QHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVL 436
           +                                       ++  A+TL +L        +
Sbjct: 545 K--------------------------------------GQEIAAKTLTKLVRTADAATI 566

Query: 437 NHLLYLLRVADRAVKRRVTLALAHLCAPDDCKTIFID----NNGLELLLGLLESTSVKQR 492
           + L  LL       K  V   L H+ +    + +  +    N+ L  L+ LL S+  + +
Sbjct: 567 SQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQ 626

Query: 493 EESSVAL 499
           E+++  L
Sbjct: 627 EKAASVL 633

Length = 2102

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 36/137 (26%), Positives = 59/137 (43%), Gaps = 35/137 (25%)

Query: 356 IAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADN-EDNVADLVRVGGVQKLQDGEFTVQ 414
           + Q GG+  L+ LL S + ++Q  AA+AL  L+    DN+  +V  GG+           
Sbjct: 3   VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLP---------- 52

Query: 415 PTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCA-PDDCKTIFID 473
                                   L+ LL+  D  V +    AL +L A P+D K I ++
Sbjct: 53  -----------------------ALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLE 89

Query: 474 NNGLELLLGLLESTSVK 490
             G+  L+ LL+S++  
Sbjct: 90  AGGVPKLVNLLDSSNED 106

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 43.2 bits (102), Expect = 5e-04
 Identities = 91/393 (23%), Positives = 153/393 (38%), Gaps = 76/393 (19%)

Query: 65   RAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAF 124
            R+A  +A+ AL E    E I    +   AV  LVE L T               E E   
Sbjct: 1246 RSARYSAARALQELFSAEHIRDSELARQAVQPLVEMLNT-------------GSESEQHA 1292

Query: 125  ALG----LLAVKPEHQQIIVDT--GALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNL 178
            A+G    L +  P     I D    AL +L  +L        S   S  ++  A  +  +
Sbjct: 1293 AIGALIKLSSGNPSKALAIADVEGNALENLCKIL--------SSDSSLELKEDAAELCRV 1344

Query: 179  AHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALP 238
               N  I++       I PL+ LL       Q A   AL  L   +++  +L+    A+ 
Sbjct: 1345 LFTNTRIRSTPAAARCIEPLISLLVSESSTAQEAGVCALDRL-LDDEQLAELVAAHGAVV 1403

Query: 239  TLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLS-------SSCS 291
             LV ++   +  +H  A+  +  L    P  K +++ AG ++ V+ +L        S+ +
Sbjct: 1404 PLVGLVVGTNYVLHEAAISALIKLGKDRPPCKLDMVKAGIIERVLDILPEAPDSLCSAIA 1463

Query: 292  E-----------SKREAA----------LLLGQFAAADSNSK----VHIVQR-------- 318
            E           +K ++A          L          +S     V+I+++        
Sbjct: 1464 ELLRILTNNSSIAKGQSAAKVVEPLFLLLTRPDLGTWGQHSALQALVNILEKPQCLASLT 1523

Query: 319  ----GAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNG 374
                 A+ PLI +L+SP   +++++A  L  L  + H Q  I     ++PL++L      
Sbjct: 1524 LTPSQAIEPLIPLLESPSQAVQQLAAELLSHLLAEEHFQQDITTQNAVVPLVRLAGIGIL 1583

Query: 375  SLQHNAAFALYGLADNEDN-VADLVRVGGVQKL 406
            SLQ  A  AL  ++ +    VAD    GG+ +L
Sbjct: 1584 SLQQRAVKALESISLSWPKAVAD---AGGIFEL 1613

Length = 2102

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 37.4 bits (88), Expect = 7e-04
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 182 NANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAF 222
           + N +  V    G+P LVELLK  D +V + AA AL  L+ 
Sbjct: 2   DENKQAVVD-AGGLPALVELLKSEDEEVVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 37.0 bits (87), Expect = 8e-04
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 182 NANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLA 221
             N +  V     +PPLV+LL   D +VQ  AA AL  LA
Sbjct: 2   PENKQA-VIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLA 40

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 35.9 bits (84), Expect = 0.002
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 8/49 (16%)

Query: 132 KPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAH 180
             E++Q +VD G LP LV LLK             V++ AA A++NL+ 
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSED--------EEVVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 40.5 bits (95), Expect = 0.003
 Identities = 50/188 (26%), Positives = 81/188 (43%), Gaps = 19/188 (10%)

Query: 57  KFSSDETDRAAAKTASHALVEFAKNEEIVSLI-VDNGAVPALVEHLQTPPQLTNAQIPYE 115
           K  S E  +AAA+ A +A+     ++ + S I    G VP+L + LQ   +         
Sbjct: 109 KSGSAEAQKAAAE-AIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKV----- 162

Query: 116 HEVEKECAFAL-GLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADA 174
             VE     AL  L           ++ G +  LV LL      GNS A +     AA  
Sbjct: 163 --VEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSS----GNSDAQAN----AASL 212

Query: 175 ITNLAHENANIKTRVRVEDGIPPLVELL-KFVDVKVQRAAAGALRTLAFKNDENKKLIVE 233
           +  L     +  ++V     +  L++LL +  +V V+  AAGAL  L+ ++ E K+ I +
Sbjct: 213 LARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIAD 272

Query: 234 CNALPTLV 241
              +P L+
Sbjct: 273 AGGIPALI 280

Length = 2102

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	704
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	100.0
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	100.0
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	100.0
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	100.0
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	100.0
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	100.0
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	100.0
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	100.0
PHA02713	557	hypothetical protein; Provisional	99.93
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	99.93
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.92
PHA02790	480	Kelch-like protein; Provisional	99.92
PHA03098	534	kelch-like protein; Provisional	99.92
KOG4350	620	consensus Uncharacterized conserved protein, conta	99.91
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.89
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.84
KOG4591	280	consensus Uncharacterized conserved protein, conta	99.81
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.8
KOG2075	521	consensus Topoisomerase TOP1-interacting protein B	99.79
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.79
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.78
PF00651	111	BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (	99.75
KOG4682	488	consensus Uncharacterized conserved protein, conta	99.74
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.73
KOG0783	1267	consensus Uncharacterized conserved protein, conta	99.73
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.72
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.72
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.69
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.68
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.68
smart00225	90	BTB Broad-Complex, Tramtrack and Bric a brac. Doma	99.62
PRK09687	280	putative lyase; Provisional	99.54
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.51
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.5
PRK09687	280	putative lyase; Provisional	99.48
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.46
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.44
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.42
KOG1293	678	consensus Proteins containing armadillo/beta-caten	99.39
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.39
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.36
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.33
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.33
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.31
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	99.29
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	99.29
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.28
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.26
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	99.24
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	99.24
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	99.23
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	99.21
KOG1293	678	consensus Proteins containing armadillo/beta-caten	99.16
KOG3678	832	consensus SARM protein (with sterile alpha and arm	99.1
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	99.1
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	99.03
PTZ00429	746	beta-adaptin; Provisional	99.02
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	99.02
KOG3678	832	consensus SARM protein (with sterile alpha and arm	99.0
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	99.0
PTZ00429	746	beta-adaptin; Provisional	98.97
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	98.95
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	98.95
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	98.91
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	98.88
KOG2973	353	consensus Uncharacterized conserved protein [Funct	98.82
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	98.81
KOG0511	516	consensus Ankyrin repeat protein [General function	98.8
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	98.79
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	98.77
KOG0212	675	consensus Uncharacterized conserved protein [Funct	98.75
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	98.66
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	98.65
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	98.63
KOG4413	524	consensus 26S proteasome regulatory complex, subun	98.62
KOG0212	675	consensus Uncharacterized conserved protein [Funct	98.58
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	98.58
KOG1824	1233	consensus TATA-binding protein-interacting protein	98.54
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	98.53
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	98.5
KOG1824	1233	consensus TATA-binding protein-interacting protein	98.49
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	98.46
COG5369	743	Uncharacterized conserved protein [Function unknow	98.45
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	98.39
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	98.39
TIGR02270	410	conserved hypothetical protein. Members are found	98.38
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.37
KOG4413	524	consensus 26S proteasome regulatory complex, subun	98.36
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	98.35
KOG2973	353	consensus Uncharacterized conserved protein [Funct	98.32
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	98.29
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	98.27
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.22
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.22
TIGR02270	410	conserved hypothetical protein. Members are found	98.21
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.21
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.19
PF05536	543	Neurochondrin: Neurochondrin	98.19
KOG1242	569	consensus Protein containing adaptin N-terminal re	98.18
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	98.16
KOG2838	401	consensus Uncharacterized conserved protein, conta	98.15
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	98.14
KOG2734	536	consensus Uncharacterized conserved protein [Funct	98.1
PF05536	543	Neurochondrin: Neurochondrin	98.1
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	98.1
KOG2734	536	consensus Uncharacterized conserved protein [Funct	98.03
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	97.98
KOG2716	230	consensus Polymerase delta-interacting protein PDI	97.96
COG1413	335	FOG: HEAT repeat [Energy production and conversion	97.95
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	97.94
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	97.94
KOG1242	569	consensus Protein containing adaptin N-terminal re	97.93
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	97.91
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	97.89
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	97.89
COG5369	743	Uncharacterized conserved protein [Function unknow	97.86
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	97.84
COG1413	335	FOG: HEAT repeat [Energy production and conversion	97.82
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	97.78
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	97.74
KOG2259	823	consensus Uncharacterized conserved protein [Funct	97.73
KOG2259	823	consensus Uncharacterized conserved protein [Funct	97.72
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	97.69
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	97.68
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	97.68
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.65
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	97.64
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	97.6
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	97.59
PF07707	103	BACK: BTB And C-terminal Kelch; InterPro: IPR01170	97.59
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	97.59
KOG2838	401	consensus Uncharacterized conserved protein, conta	97.59
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	97.58
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	97.58
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	97.58
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	97.55
PF02214	94	BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi	97.55
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	97.51
KOG3473	112	consensus RNA polymerase II transcription elongati	97.51
KOG0567	289	consensus HEAT repeat-containing protein [General	97.49
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.46
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	97.38
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	97.34
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	97.34
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	97.29
smart00512	104	Skp1 Found in Skp1 protein family. Family of Skp1	97.23
KOG0567	289	consensus HEAT repeat-containing protein [General	97.22
KOG1987	297	consensus Speckle-type POZ protein SPOP and relate	97.21
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	97.2
COG5096	757	Vesicle coat complex, various subunits [Intracellu	97.08
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	97.07
KOG3036	293	consensus Protein involved in cell differentiation	97.06
smart00875	101	BACK BTB And C-terminal Kelch. The BACK domain is	97.03
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	97.02
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.0
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	96.99
KOG1724	162	consensus SCF ubiquitin ligase, Skp1 component [Po	96.97
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	96.95
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	96.94
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	96.92
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	96.86
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	96.86
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	96.8
KOG2032	533	consensus Uncharacterized conserved protein [Funct	96.77
PF11822	317	DUF3342: Domain of unknown function (DUF3342); Int	96.76
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	96.75
KOG0511	516	consensus Ankyrin repeat protein [General function	96.73
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	96.72
PF03931	62	Skp1_POZ: Skp1 family, tetramerisation domain; Int	96.7
PF07814	361	WAPL: Wings apart-like protein regulation of heter	96.7
PRK14707	2710	hypothetical protein; Provisional	96.65
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	96.65
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	96.64
KOG3036	293	consensus Protein involved in cell differentiation	96.62
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	96.56
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	96.55
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	96.52
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	96.51
PRK14707	2710	hypothetical protein; Provisional	96.5
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	96.48
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	96.47
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	96.47
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	96.44
KOG2062	929	consensus 26S proteasome regulatory complex, subun	96.43
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	96.33
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	96.32
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	96.29
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	96.27
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	96.19
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	96.16
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	96.14
COG5096	757	Vesicle coat complex, various subunits [Intracellu	96.12
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	96.04
PF07814	361	WAPL: Wings apart-like protein regulation of heter	96.02
KOG2062	929	consensus 26S proteasome regulatory complex, subun	95.96
COG5656	970	SXM1 Importin, protein involved in nuclear import	95.82
PF08045	257	CDC14: Cell division control protein 14, SIN compo	95.69
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	95.65
KOG1665	302	consensus AFH1-interacting protein FIP2, contains	95.62
KOG4653	982	consensus Uncharacterized conserved protein [Funct	95.45
PF08045	257	CDC14: Cell division control protein 14, SIN compo	95.44
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	95.43
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	95.27
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	95.22
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	95.18
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	95.16
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	95.1
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	95.1
PF05004	309	IFRD: Interferon-related developmental regulator (	95.08
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	95.0
KOG2025	892	consensus Chromosome condensation complex Condensi	94.9
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	94.84
KOG2025	892	consensus Chromosome condensation complex Condensi	94.82
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	94.82
KOG1566	342	consensus Conserved protein Mo25 [Function unknown	94.82
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	94.81
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	94.77
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	94.72
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	94.71
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	94.7
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	94.69
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	94.68
KOG2715	210	consensus Uncharacterized conserved protein, conta	94.58
KOG2714	465	consensus SETA binding protein SB1 and related pro	94.51
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	94.23
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	94.22
PF05004	309	IFRD: Interferon-related developmental regulator (	94.2
KOG2032	533	consensus Uncharacterized conserved protein [Funct	94.05
KOG1788	2799	consensus Uncharacterized conserved protein [Funct	94.0
KOG4464	532	consensus Signaling protein RIC-8/synembryn (regul	93.95
KOG4464	532	consensus Signaling protein RIC-8/synembryn (regul	93.95
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	93.91
KOG4653	982	consensus Uncharacterized conserved protein [Funct	93.9
KOG1778	319	consensus CREB binding protein/P300 and related TA	93.86
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	93.75
KOG1243	690	consensus Protein kinase [General function predict	93.65
KOG0414	1251	consensus Chromosome condensation complex Condensi	93.43
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	93.42
KOG1566	342	consensus Conserved protein Mo25 [Function unknown	93.22
COG5116	926	RPN2 26S proteasome regulatory complex component [	93.09
KOG0414	1251	consensus Chromosome condensation complex Condensi	93.06
KOG1243	690	consensus Protein kinase [General function predict	92.89
PF11707	330	Npa1: Ribosome 60S biogenesis N-terminal; InterPro	92.81
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	92.75
KOG2956	516	consensus CLIP-associating protein [General functi	92.5
COG5098	1128	Chromosome condensation complex Condensin, subunit	92.43
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	92.39
COG5201	158	SKP1 SCF ubiquitin ligase, SKP1 component [Posttra	92.22
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	92.19
KOG2956	516	consensus CLIP-associating protein [General functi	92.17
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	91.55
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	91.54
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	91.36
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	91.29
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	90.86
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	90.47
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	90.47
COG5098	1128	Chromosome condensation complex Condensin, subunit	90.08
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	89.39
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	89.38
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	89.35
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	89.28
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	89.19
PF01466	78	Skp1: Skp1 family, dimerisation domain; InterPro:	88.98
COG5116	926	RPN2 26S proteasome regulatory complex component [	88.28
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	88.27
KOG1992	960	consensus Nuclear export receptor CSE1/CAS (import	88.21
KOG2137	700	consensus Protein kinase [Signal transduction mech	88.08
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	88.0
KOG2933	334	consensus Uncharacterized conserved protein [Funct	87.72
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	87.66
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	86.96
PF11864	464	DUF3384: Domain of unknown function (DUF3384); Int	86.86
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	86.34
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	85.42
KOG1788	2799	consensus Uncharacterized conserved protein [Funct	85.2
PF11707	330	Npa1: Ribosome 60S biogenesis N-terminal; InterPro	85.19
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	85.14
KOG2933	334	consensus Uncharacterized conserved protein [Funct	84.18
KOG1525	1266	consensus Sister chromatid cohesion complex Cohesi	83.31
KOG0301	745	consensus Phospholipase A2-activating protein (con	83.27
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	83.11
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	83.0
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	82.28
PF14225	262	MOR2-PAG1_C: Cell morphogenesis C-terminal	81.33
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	81.24
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	80.55
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	80.35
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	80.31
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	80.18

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.1e-38  Score=319.79  Aligned_cols=399  Identities=22%  Similarity=0.313  Sum_probs=339.1

Q ss_pred             hhccCCchhhHHHHHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CCh
Q 005282           55 NSKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKP  133 (704)
Q Consensus        55 ~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~  133 (704)
                      ..+.+++.+.+.....+++.+.....+|.... ++.+|+||.+++.|...+.         +.++..|+|+|.|++ +++
T Consensus        73 ~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~-vi~~G~v~~lV~~l~~~~~---------~~lq~eAAWaLTnIAsgts  142 (514)
T KOG0166|consen   73 AALYSDDPQQQLTATQAFRKLLSKERNPPIDE-VIQSGVVPRLVEFLSRDDN---------PTLQFEAAWALTNIASGTS  142 (514)
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHccCCCCCHHH-HHHcCcHHHHHHHHccCCC---------hhHHHHHHHHHHHHhcCch
Confidence            33445666666666777777776666776644 4566999999999987653         589999999999999 888


Q ss_pred             hhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCH-HHHHH
Q 005282          134 EHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDV-KVQRA  212 (704)
Q Consensus       134 ~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~-~~~~~  212 (704)
                      +....++++|++|.+++++.+++.        .++++|+|+|+|++.+++.+|..+...|++++|+.++...++ .+.+.
T Consensus       143 e~T~~vv~agavp~fi~Ll~s~~~--------~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn  214 (514)
T KOG0166|consen  143 EQTKVVVDAGAVPIFIQLLSSPSA--------DVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRN  214 (514)
T ss_pred             hhccccccCCchHHHHHHhcCCcH--------HHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHH
Confidence            999999999999999999999987        999999999999999999999999999999999999997776 78899


Q ss_pred             HHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChh
Q 005282          213 AAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSE  292 (704)
Q Consensus       213 a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~  292 (704)
                      +.|+|.|+|.+.......-.-..++|.|..++.+.|++|...|+|+|.+|+.+.++..+.+++.|+++.|+.+|.+.+..
T Consensus       215 ~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~  294 (514)
T KOG0166|consen  215 ATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPK  294 (514)
T ss_pred             HHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcc
Confidence            99999999986643333333345799999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhC-CCCHHHHHHHHHHHHHhhcCCchh-hhHHhhCChHHHHHhhc
Q 005282          293 SKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQ-SPDSQLKEMSAFALGRLAQDTHNQ-AGIAQDGGILPLLKLLD  370 (704)
Q Consensus       293 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~~~~~L~~ll~  370 (704)
                      ++..|+++++|++.+++...+.+++.|+++.|..++. ++...+++.|||+++|++.+...+ ..++..|.++.|+.+++
T Consensus       295 v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~  374 (514)
T KOG0166|consen  295 VVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQ  374 (514)
T ss_pred             cccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHh
Confidence            9999999999999999999999999999999999998 566679999999999999987755 45778899999999999


Q ss_pred             CCChhHHHHHHHHHHHccc--CCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccH
Q 005282          371 SKNGSLQHNAAFALYGLAD--NEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADR  448 (704)
Q Consensus       371 ~~~~~v~~~a~~~L~~l~~--~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~  448 (704)
                      +++..+|++|+|++.|++.  +++...++++.|.++++                                 ..+|...+.
T Consensus       375 ~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~pl---------------------------------cdlL~~~D~  421 (514)
T KOG0166|consen  375 TAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPL---------------------------------CDLLTCPDV  421 (514)
T ss_pred             ccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhh---------------------------------hhcccCCCh
Confidence            9999999999999999995  67778889988876664                                 455666677


Q ss_pred             HHHHHHHHHHHhcc-----CC----CccceeeecCCcHHHHHHHHhhcchhhhhhHHHHHHHHhh
Q 005282          449 AVKRRVTLALAHLC-----AP----DDCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLAT  504 (704)
Q Consensus       449 ~v~~~a~~~L~~l~-----~~----~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~  504 (704)
                      .+...+..+|.++-     ..    +.....+.+.||+..+-.|-.+++.++-..|...+..--.
T Consensus       422 ~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~~yf~  486 (514)
T KOG0166|consen  422 KIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIIDTYFS  486 (514)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhccccHHHHHHHHHHHHHhcC
Confidence            77777777777771     11    3334556678999999999999999998888777665433

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=100.00  E-value=1.8e-37  Score=356.31  Aligned_cols=446  Identities=20%  Similarity=0.220  Sum_probs=361.7

Q ss_pred             HHHhhhccCCchhhHHHHHHHHHHHHHhhcC-hhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhh
Q 005282           51 IDILNSKFSSDETDRAAAKTASHALVEFAKN-EEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLL  129 (704)
Q Consensus        51 ~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l  129 (704)
                      ++.++.++++  .++..+.+|+++|.+++.+ ++.+..+++.|+||.|+++|.+.+.         +.+|++|+|+|.+|
T Consensus       191 Vp~LV~LLsS--~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~---------~~VRE~AA~AL~nL  259 (2102)
T PLN03200        191 VDILVKLLSS--GNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNE---------VSVRAEAAGALEAL  259 (2102)
T ss_pred             HHHHHHHHcC--CCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCC---------hHHHHHHHHHHHHH
Confidence            3444444443  3356788999999888764 7788999999999999999987542         48999999999999


Q ss_pred             c-CChhhHHHHHHcCCcHHHHHHHhhccCCCC-CcchhHHHHHHHHHHHHhhhcChh-----------h-----------
Q 005282          130 A-VKPEHQQIIVDTGALPHLVSLLKQYKNGGN-SRALSGVIRRAADAITNLAHENAN-----------I-----------  185 (704)
Q Consensus       130 ~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~-~~~~~~~~~~a~~~L~~l~~~~~~-----------~-----------  185 (704)
                      + +++++++.+++.|+++.|++++..+..... ......++++++|+|+|+|.+.+.           .           
T Consensus       260 As~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~g  339 (2102)
T PLN03200        260 SSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLG  339 (2102)
T ss_pred             hcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHh
Confidence            9 789999999999999999999986542110 000126789999999998864211           0           


Q ss_pred             ---------------------------------------------------------hhhhhccCCcHHHHHHhcCCCHH
Q 005282          186 ---------------------------------------------------------KTRVRVEDGIPPLVELLKFVDVK  208 (704)
Q Consensus       186 ---------------------------------------------------------~~~~~~~~~i~~L~~ll~~~~~~  208 (704)
                                                                               +..+...++++.|+.++...+.+
T Consensus       340 ALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~e  419 (2102)
T PLN03200        340 ALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATAD  419 (2102)
T ss_pred             hHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHH
Confidence                                                                     00112234455566666667788


Q ss_pred             HHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcC
Q 005282          209 VQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSS  288 (704)
Q Consensus       209 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~  288 (704)
                      ++..++++|++++.++++.++.+.+.|+++.|+++|.+++..+++.++++|++++..++..+..+++.|+++.|+.+|.+
T Consensus       420 vQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s  499 (2102)
T PLN03200        420 VQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLET  499 (2102)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcC
Confidence            99999999999998889999999999999999999999999999999999999999888889999999999999999999


Q ss_pred             CChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchh---------------
Q 005282          289 SCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQ---------------  353 (704)
Q Consensus       289 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~---------------  353 (704)
                      ++..++++|+|+|+|++.+.+..+..+.+.|++++|+.+|+++++++++.|+++|.+++.+.+..               
T Consensus       500 ~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~  579 (2102)
T PLN03200        500 GSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPE  579 (2102)
T ss_pred             CCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChh
Confidence            99999999999999999855455555667899999999999999999999999999997432211               


Q ss_pred             ----------------------hh-HHhhCChHHHHHhhcCCChhHHHHHHHHHHHccc-CCchhhHHHhhCCccccccc
Q 005282          354 ----------------------AG-IAQDGGILPLLKLLDSKNGSLQHNAAFALYGLAD-NEDNVADLVRVGGVQKLQDG  409 (704)
Q Consensus       354 ----------------------~~-~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~l~~~  409 (704)
                                            .. ....|+++.|++++++++..+++.|+++|.+++. +++.+..++..|++++++..
T Consensus       580 ~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~L  659 (2102)
T PLN03200        580 SKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKL  659 (2102)
T ss_pred             HHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHH
Confidence                                  00 1135899999999999999999999999999996 66778899999999999865


Q ss_pred             ccccccc-h----HHHHHHHH---H--HHHHhhcchhHHHHHHHhhccHHHHHHHHHHHHhccCCCccceeeecCCcHHH
Q 005282          410 EFTVQPT-K----DCVARTLK---R--LEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPDDCKTIFIDNNGLEL  479 (704)
Q Consensus       410 ~~~~~~~-~----~~~~~~~~---~--~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~  479 (704)
                      ....... .    .++.+...   .  ....+..+.+++|+.++.+++..+...|+.+|.+++...+.+..+...|+++.
T Consensus       660 Lss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~  739 (2102)
T PLN03200        660 LTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILP  739 (2102)
T ss_pred             HhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHH
Confidence            4443321 1    12222221   1  11224678999999999999999999999999999999888888888999999


Q ss_pred             HHHHHhhcchhhhhhHHHHHHHHhhhcC
Q 005282          480 LLGLLESTSVKQREESSVALYKLATKAT  507 (704)
Q Consensus       480 L~~ll~~~~~~~~~~a~~~L~~L~~~~~  507 (704)
                      |+++++++++..|+.|+++|.+|++..+
T Consensus       740 Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~  767 (2102)
T PLN03200        740 LTRVLREGTLEGKRNAARALAQLLKHFP  767 (2102)
T ss_pred             HHHHHHhCChHHHHHHHHHHHHHHhCCC
Confidence            9999999999999999999999987654

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=100.00  E-value=1.8e-37  Score=285.97  Aligned_cols=406  Identities=21%  Similarity=0.300  Sum_probs=323.8

Q ss_pred             HHhhhccCCchhhHHHHHHHHHHHHHhh---cChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHh
Q 005282           52 DILNSKFSSDETDRAAAKTASHALVEFA---KNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGL  128 (704)
Q Consensus        52 ~~l~~~~~~~~~~~~~~~~a~~~L~~l~---~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~  128 (704)
                      ++...+.+++.+.+   ..|...+..+-   .+|.. +.++++|++|.+++++.....         .-.+.+|+|+|.|
T Consensus        75 ~lt~~l~SdDie~q---~qav~kFR~~LS~E~~PPI-q~VIdaGvVpRfvefm~~~q~---------~mlqfEAaWalTN  141 (526)
T COG5064          75 QLTQQLFSDDIEQQ---LQAVYKFRKLLSKETSPPI-QPVIDAGVVPRFVEFMDEIQR---------DMLQFEAAWALTN  141 (526)
T ss_pred             HHHHHHhhhHHHHH---HHHHHHHHHHhccccCCCc-hhHHhccccHHHHHHHHhcch---------hHHHHHHHHHHhh
Confidence            33344455555444   45555555443   34665 667799999999999965443         2678899999999


Q ss_pred             hc-CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCH
Q 005282          129 LA-VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDV  207 (704)
Q Consensus       129 l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~  207 (704)
                      ++ +.......++++|++|.++++|.+...        +++++++|+|+|++.+++.+|..+...|++.+++.++.+..+
T Consensus       142 iaSGtt~QTkvVvd~~AVPlfiqlL~s~~~--------~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~  213 (526)
T COG5064         142 IASGTTQQTKVVVDAGAVPLFIQLLSSTED--------DVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAI  213 (526)
T ss_pred             hccCcccceEEEEeCCchHHHHHHHcCchH--------HHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccc
Confidence            99 666677788999999999999999887        999999999999999999999999999999999999997654


Q ss_pred             --HHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHH
Q 005282          208 --KVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGL  285 (704)
Q Consensus       208 --~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~l  285 (704)
                        .+.+.+.|+|.|||.+....-.--.-...+|.|.+++.+.|+++...|+|++..++....+..+++++.|..+.|+++
T Consensus       214 ~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvEl  293 (526)
T COG5064         214 HISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVEL  293 (526)
T ss_pred             hHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHH
Confidence              888999999999998643322221222358999999999999999999999999999988899999999999999999


Q ss_pred             hcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhh-hHHhhCChHH
Q 005282          286 LSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQA-GIAQDGGILP  364 (704)
Q Consensus       286 l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~-~~~~~~~~~~  364 (704)
                      |.+++..++..+++.++|+..+++.+...+++.|+++.+..+|.++...+++.|||+++|++.+...+. .+++.+.+|+
T Consensus       294 Ls~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPp  373 (526)
T COG5064         294 LSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPP  373 (526)
T ss_pred             hcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchH
Confidence            999999999999999999999888888889999999999999999999999999999999998876654 4778899999


Q ss_pred             HHHhhcCCChhHHHHHHHHHHHcccC----CchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHH
Q 005282          365 LLKLLDSKNGSLQHNAAFALYGLADN----EDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLL  440 (704)
Q Consensus       365 L~~ll~~~~~~v~~~a~~~L~~l~~~----~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  440 (704)
                      |+++|.+.+..+++.|||++.|.++.    |+..+.++..|.+.+|                                 .
T Consensus       374 Li~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpL---------------------------------c  420 (526)
T COG5064         374 LIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPL---------------------------------C  420 (526)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHH---------------------------------H
Confidence            99999999999999999999999863    4555667776766654                                 3


Q ss_pred             HHHhhccHHHHHHHHHHHHhcc------------CCCccceeeecCCcHHHHHHHHhhcchhhhhhHHHHHHHHhhhcCC
Q 005282          441 YLLRVADRAVKRRVTLALAHLC------------APDDCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLATKATS  508 (704)
Q Consensus       441 ~ll~~~~~~v~~~a~~~L~~l~------------~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~~  508 (704)
                      .+|...+..+-+.++.++.|+-            ..+.....+.+.||+..+-.+-.+.+..+-..|-..+...-....+
T Consensus       421 ~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s~n~~iy~KAYsIIe~fFgeeD~  500 (526)
T COG5064         421 DLLDVVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSIIEKFFGEEDA  500 (526)
T ss_pred             HHHhccCccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHhhhccccHHHHHHHHHHHHHcccchh
Confidence            3443333333333333333331            1112223334579999999999999999988898888777655544


Q ss_pred             CCC
Q 005282          509 LSP  511 (704)
Q Consensus       509 ~~~  511 (704)
                      .+.
T Consensus       501 vd~  503 (526)
T COG5064         501 VDE  503 (526)
T ss_pred             hhh
Confidence            444

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.2e-35  Score=297.96  Aligned_cols=362  Identities=24%  Similarity=0.340  Sum_probs=311.4

Q ss_pred             HHHHHhhhccCCchhhHHHHHHHHHHHHHhhc-ChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHH
Q 005282           49 AQIDILNSKFSSDETDRAAAKTASHALVEFAK-NEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALG  127 (704)
Q Consensus        49 ~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~  127 (704)
                      -.++.++..++.+ .++..+.+|+|+|.+++. +++..+.++++|++|.++.++.+++.          +++++|.|+|+
T Consensus       109 G~v~~lV~~l~~~-~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~----------~v~eQavWALg  177 (514)
T KOG0166|consen  109 GVVPRLVEFLSRD-DNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSA----------DVREQAVWALG  177 (514)
T ss_pred             CcHHHHHHHHccC-CChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcH----------HHHHHHHHHHh
Confidence            4555666666533 334579999999999999 58999999999999999999999986          99999999999


Q ss_pred             hhc-CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCC
Q 005282          128 LLA-VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVD  206 (704)
Q Consensus       128 ~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~  206 (704)
                      |++ +++.+|+.+++.|++++|+.++..+..       ..+.+.+.|+|.|+|.+..+....-....++|.|..++.+.|
T Consensus       178 NIagds~~~Rd~vl~~g~l~pLl~~l~~~~~-------~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D  250 (514)
T KOG0166|consen  178 NIAGDSPDCRDYVLSCGALDPLLRLLNKSDK-------LSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTD  250 (514)
T ss_pred             ccccCChHHHHHHHhhcchHHHHHHhccccc-------hHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCC
Confidence            999 899999999999999999999998765       268999999999999766444444555678999999999999


Q ss_pred             HHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHh
Q 005282          207 VKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLL  286 (704)
Q Consensus       207 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll  286 (704)
                      ++++..|+|++++|+.+.++..+.+++.|+++.|+.+|.++++.++..|+++++|++.+++...+.+++.|+++.|..++
T Consensus       251 ~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll  330 (514)
T KOG0166|consen  251 EEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLL  330 (514)
T ss_pred             HHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHh
Confidence            99999999999999998999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             c-CCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCc-hh-hhHHhhCChH
Q 005282          287 S-SSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTH-NQ-AGIAQDGGIL  363 (704)
Q Consensus       287 ~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~-~~~~~~~~~~  363 (704)
                      . ++...++.+|+|+++|++.++.+..+.+++.|++|.|++++++.+.++|+.|+|+++|++.+.. .+ ..+++.|.++
T Consensus       331 ~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~  410 (514)
T KOG0166|consen  331 SSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIK  410 (514)
T ss_pred             ccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCch
Confidence            8 5555689999999999999999999999999999999999999999999999999999996644 33 4578899999


Q ss_pred             HHHHhhcCCChhHHHHHHHHHHHcccC---------CchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcc
Q 005282          364 PLLKLLDSKNGSLQHNAAFALYGLADN---------EDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGR  434 (704)
Q Consensus       364 ~L~~ll~~~~~~v~~~a~~~L~~l~~~---------~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (704)
                      +++.+|.-.+..+...++.+|.++-..         ......+-+.||++.                             
T Consensus       411 plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldk-----------------------------  461 (514)
T KOG0166|consen  411 PLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDK-----------------------------  461 (514)
T ss_pred             hhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhH-----------------------------
Confidence            999999888999988999999888531         122334445566554                             


Q ss_pred             hhHHHHHHHhhccHHHHHHHHHHHHhc
Q 005282          435 VLNHLLYLLRVADRAVKRRVTLALAHL  461 (704)
Q Consensus       435 ~~~~L~~ll~~~~~~v~~~a~~~L~~l  461 (704)
                          +-.+-.+++.++-..|...+...
T Consensus       462 ----iE~LQ~hen~~Iy~~A~~II~~y  484 (514)
T KOG0166|consen  462 ----IENLQSHENEEIYKKAYKIIDTY  484 (514)
T ss_pred             ----HHHhhccccHHHHHHHHHHHHHh
Confidence                23333456677777777777766

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=100.00  E-value=2.8e-34  Score=330.16  Aligned_cols=404  Identities=23%  Similarity=0.245  Sum_probs=348.6

Q ss_pred             HHhhhccCCchhhHHHHHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-
Q 005282           52 DILNSKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-  130 (704)
Q Consensus        52 ~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-  130 (704)
                      +.|..++...+.. ..+..+..+|..+..++..++.+.+.|+++.|+.+|...+.          +++..++++|.+++ 
T Consensus       365 ~~LV~Llr~k~p~-~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~----------evQ~~Av~aL~~L~~  433 (2102)
T PLN03200        365 QILVKLLKPRDTK-LVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATA----------DVQEELIRALSSLCC  433 (2102)
T ss_pred             HHHHHHhCCCCCc-hhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCH----------HHHHHHHHHHHHHhC
Confidence            3455555433322 23566788888888889998999999999999999999976          99999999999999 


Q ss_pred             CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHH
Q 005282          131 VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQ  210 (704)
Q Consensus       131 ~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~  210 (704)
                      ++.+.++.+.+.|++|.|+++|.+.+.        .+++.+++++++++.++++.+..+.+.|++|.|+++|.+++..++
T Consensus       434 ~~~e~~~aIi~~ggIp~LV~LL~s~s~--------~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iq  505 (2102)
T PLN03200        434 GKGGLWEALGGREGVQLLISLLGLSSE--------QQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAK  505 (2102)
T ss_pred             CCHHHHHHHHHcCcHHHHHHHHcCCCH--------HHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHH
Confidence            778999999999999999999998765        899999999999998888889999999999999999999999999


Q ss_pred             HHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhh---------------------
Q 005282          211 RAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSI---------------------  269 (704)
Q Consensus       211 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~---------------------  269 (704)
                      +.|+|+|.|++.+.+..+..+.+.|+++.|+++|+++++.++..|+++|.+++...+..                     
T Consensus       506 eeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL  585 (2102)
T PLN03200        506 EDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVL  585 (2102)
T ss_pred             HHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHH
Confidence            99999999999855556666668899999999999999999999999999996432110                     


Q ss_pred             ----------------HHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCH
Q 005282          270 ----------------KKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDS  333 (704)
Q Consensus       270 ----------------~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~  333 (704)
                                      .......|+++.|+.++.+++..+++.|+++|.+++.+.++....++..|++++++.++++++.
T Consensus       586 ~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~  665 (2102)
T PLN03200        586 DVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTE  665 (2102)
T ss_pred             HHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCh
Confidence                            0111136899999999999999999999999999999888888899999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcCC--chhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcccCCchhhHHHhhCCccccccccc
Q 005282          334 QLKEMSAFALGRLAQDT--HNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEF  411 (704)
Q Consensus       334 ~v~~~a~~~L~~l~~~~--~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~g~i~~l~~~~~  411 (704)
                      ++++.++|+|.+++.+.  .++..+++.|++++|++++.+.+..+...++.+|.+++.+++.+..+...|+++       
T Consensus       666 ~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~-------  738 (2102)
T PLN03200        666 AVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIIL-------  738 (2102)
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHH-------
Confidence            99999999999999643  334567889999999999999999999999999999999999998888877754       


Q ss_pred             ccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHHHHHHHHhccCCCccc----eeeecCCcHHHHHHHHhhc
Q 005282          412 TVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPDDCK----TIFIDNNGLELLLGLLEST  487 (704)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~----~~l~~~~~i~~L~~ll~~~  487 (704)
                                                +|+.+++++++..|++|+++|.+||+..+.-    ..+...|.+..|+.+|++.
T Consensus       739 --------------------------~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~  792 (2102)
T PLN03200        739 --------------------------PLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNST  792 (2102)
T ss_pred             --------------------------HHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcC
Confidence                                      5778999999999999999999998754422    4446679999999999987


Q ss_pred             chhhhhh--HHHHHHHHhhhcC
Q 005282          488 SVKQREE--SSVALYKLATKAT  507 (704)
Q Consensus       488 ~~~~~~~--a~~~L~~L~~~~~  507 (704)
                      +.+....  |..+|..|++...
T Consensus       793 ~~~~~~~~~al~~l~~l~~~~~  814 (2102)
T PLN03200        793 DLDSSATSEALEALALLARTKG  814 (2102)
T ss_pred             CcchhhHHHHHHHHHHHHhhcc
Confidence            7776655  8999999998643

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=100.00  E-value=4.4e-35  Score=270.29  Aligned_cols=310  Identities=24%  Similarity=0.331  Sum_probs=279.9

Q ss_pred             hhHHHHHHHHHHHHHhhcC-hhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHHHH
Q 005282           63 TDRAAAKTASHALVEFAKN-EEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQIIV  140 (704)
Q Consensus        63 ~~~~~~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~~  140 (704)
                      +....+.+|+|+|.|++.+ ....+.++++|++|.++++|.++..          +|++++.|+|+|++ +++.+|+.+.
T Consensus       127 q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~----------~V~eQavWALGNiAGDS~~~RD~vL  196 (526)
T COG5064         127 QRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTED----------DVREQAVWALGNIAGDSEGCRDYVL  196 (526)
T ss_pred             chhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchH----------HHHHHHHHHhccccCCchhHHHHHH
Confidence            4445789999999999985 6777888899999999999999976          99999999999999 8889999999


Q ss_pred             HcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHh
Q 005282          141 DTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTL  220 (704)
Q Consensus       141 ~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l  220 (704)
                      +.|++.+++.++.++..      ...+.+.+.|.|+|+|.+..+...+-.-...+|.|.+++.+.|+++..-|+|++..|
T Consensus       197 ~~galeplL~ll~ss~~------~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYl  270 (526)
T COG5064         197 QCGALEPLLGLLLSSAI------HISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYL  270 (526)
T ss_pred             hcCchHHHHHHHHhccc------hHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHh
Confidence            99999999999986554      238899999999999976555555566667899999999999999999999999999


Q ss_pred             ccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHH
Q 005282          221 AFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALL  300 (704)
Q Consensus       221 ~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~  300 (704)
                      +.+..+..+.+.+.|+.+.|+.+|.+++..++..+++.++|+..+++...+.+++.|+++.+..+|+++...++.++||+
T Consensus       271 sDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWT  350 (526)
T COG5064         271 SDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWT  350 (526)
T ss_pred             ccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhhee
Confidence            99888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchh----hhHHhhCChHHHHHhhcCCChhH
Q 005282          301 LGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQ----AGIAQDGGILPLLKLLDSKNGSL  376 (704)
Q Consensus       301 L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~----~~~~~~~~~~~L~~ll~~~~~~v  376 (704)
                      ++|++.++.+..+.+++.+++|+|+++|.+.+..+++.|||++.|...+.-++    ..++..|.+.+|+.+|.-.+..+
T Consensus       351 iSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNki  430 (526)
T COG5064         351 ISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKI  430 (526)
T ss_pred             ecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccc
Confidence            99999999999999999999999999999999999999999999999775443    45788899999999998777767


Q ss_pred             HHHHHHHHHHcc
Q 005282          377 QHNAAFALYGLA  388 (704)
Q Consensus       377 ~~~a~~~L~~l~  388 (704)
                      .+.++.++.|+-
T Consensus       431 iev~LD~~eniL  442 (526)
T COG5064         431 IEVALDAIENIL  442 (526)
T ss_pred             hhhhHHHHHHHH
Confidence            777777777765

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.3e-33  Score=259.44  Aligned_cols=389  Identities=24%  Similarity=0.299  Sum_probs=342.6

Q ss_pred             hhHHHHHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHc
Q 005282           63 TDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDT  142 (704)
Q Consensus        63 ~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~  142 (704)
                      .+..++..+...+.+++.+-+++..++..+++..|+.-+..+..          +++..+..++.||+...+++..+...
T Consensus        97 ~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~v----------evqcnaVgCitnLaT~d~nk~kiA~s  166 (550)
T KOG4224|consen   97 CDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGV----------EVQCNAVGCITNLATFDSNKVKIARS  166 (550)
T ss_pred             cchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCCc----------EEEeeehhhhhhhhccccchhhhhhc
Confidence            44567888999999999988888888888888888766666665          79999999999999778999999999


Q ss_pred             CCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhcc
Q 005282          143 GALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAF  222 (704)
Q Consensus       143 g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~  222 (704)
                      |++.++.++-+..+.        .+++++..+|.++.. ..+.|..++..|++|.|+.++.++++.++..++.++.+++.
T Consensus       167 GaL~pltrLakskdi--------rvqrnatgaLlnmTh-s~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaV  237 (550)
T KOG4224|consen  167 GALEPLTRLAKSKDI--------RVQRNATGALLNMTH-SRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAV  237 (550)
T ss_pred             cchhhhHhhcccchh--------hHHHHHHHHHHHhhh-hhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhh
Confidence            999999996555544        899999999999995 77889999999999999999999999999999999999997


Q ss_pred             CCchhhHHhHhcC--ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHH
Q 005282          223 KNDENKKLIVECN--ALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALL  300 (704)
Q Consensus       223 ~~~~~~~~~~~~~--~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~  300 (704)
                       +...|+.+.+.+  .++.|++++.++++.++..|..+|++++.. .+....++++|.+|.++++++++........+.+
T Consensus       238 -d~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasd-t~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaC  315 (550)
T KOG4224|consen  238 -DRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASD-TEYQREIVEAGSLPLLVELLQSPMGPLILASVAC  315 (550)
T ss_pred             -hHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhccc-chhhhHHHhcCCchHHHHHHhCcchhHHHHHHHH
Confidence             778888888877  999999999999999999999999999976 5667779999999999999999888888889999


Q ss_pred             HHHHhccCCcchHHHHhcCChHHHHHhhCCCC-HHHHHHHHHHHHHhhc-CCchhhhHHhhCChHHHHHhhcCCChhHHH
Q 005282          301 LGQFAAADSNSKVHIVQRGAVRPLIEMLQSPD-SQLKEMSAFALGRLAQ-DTHNQAGIAQDGGILPLLKLLDSKNGSLQH  378 (704)
Q Consensus       301 L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~  378 (704)
                      +.|++. .+-+...+.+.|++.+|+.+|+.++ .+++.+|..+|+||+. ...++..+.+.|+++.+..++.++..++|.
T Consensus       316 Irnisi-hplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqs  394 (550)
T KOG4224|consen  316 IRNISI-HPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQS  394 (550)
T ss_pred             Hhhccc-ccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHH
Confidence            999986 6777778899999999999999765 4599999999999997 567788899999999999999999999999


Q ss_pred             HHHHHHHHcccCCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHHHHHHH
Q 005282          379 NAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLAL  458 (704)
Q Consensus       379 ~a~~~L~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L  458 (704)
                      ..-.++..|+.+++.+..+.+.|.++.|                                 +.+..+.+.+++-+++.+|
T Consensus       395 eisac~a~Lal~d~~k~~lld~gi~~iL---------------------------------Ip~t~s~s~Ev~gNaAaAL  441 (550)
T KOG4224|consen  395 EISACIAQLALNDNDKEALLDSGIIPIL---------------------------------IPWTGSESEEVRGNAAAAL  441 (550)
T ss_pred             HHHHHHHHHHhccccHHHHhhcCCccee---------------------------------ecccCccchhhcccHHHHH
Confidence            9999999999999999999999988774                                 4567788899999999999


Q ss_pred             HhccCCCccceeeecC-----CcHH-HHHHHHhhcchhhhhhHHHHHHHHhhhc
Q 005282          459 AHLCAPDDCKTIFIDN-----NGLE-LLLGLLESTSVKQREESSVALYKLATKA  506 (704)
Q Consensus       459 ~~l~~~~~~~~~l~~~-----~~i~-~L~~ll~~~~~~~~~~a~~~L~~L~~~~  506 (704)
                      .||+++.+....+.+.     +|++ .|.+++.+....++..|.|.+.+|..+.
T Consensus       442 ~Nlss~v~~YarviEawd~P~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~h  495 (550)
T KOG4224|consen  442 INLSSDVEHYARVIEAWDHPVQGIQGRLARFLASHELTFRHIARWTIQQLLEDH  495 (550)
T ss_pred             HhhhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhC
Confidence            9998866554433333     5555 6888998988899999999999999866

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.2e-33  Score=263.08  Aligned_cols=375  Identities=27%  Similarity=0.358  Sum_probs=336.6

Q ss_pred             CCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHH
Q 005282           91 NGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRR  170 (704)
Q Consensus        91 ~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~  170 (704)
                      .....+++-++++.+.          .++..+..+++|++.+-+++..+.+.+++..|+.-+-.+..        +++..
T Consensus        84 res~epvl~llqs~d~----------~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~v--------evqcn  145 (550)
T KOG4224|consen   84 RESNEPVLALLQSCDK----------CIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGV--------EVQCN  145 (550)
T ss_pred             hhhhhHHHHHHhCcch----------hhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCCc--------EEEee
Confidence            3457788888888865          99999999999999888888888889999988877776665        88999


Q ss_pred             HHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHH
Q 005282          171 AADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDAS  250 (704)
Q Consensus       171 a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~  250 (704)
                      ++.+++|++.. ..++..+...|++.++.++-++.+..+++++..+|.++.. ..++|+.++..|++|.|+.++.++++.
T Consensus       146 aVgCitnLaT~-d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmTh-s~EnRr~LV~aG~lpvLVsll~s~d~d  223 (550)
T KOG4224|consen  146 AVGCITNLATF-DSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTH-SRENRRVLVHAGGLPVLVSLLKSGDLD  223 (550)
T ss_pred             ehhhhhhhhcc-ccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhh-hhhhhhhhhccCCchhhhhhhccCChh
Confidence            99999999974 6678889999999999999999999999999999999995 899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHHcC--CHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhh
Q 005282          251 VHFEAVGVIGNLVHSSPSIKKEVILAG--ALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEML  328 (704)
Q Consensus       251 v~~~a~~~L~~l~~~~~~~~~~~~~~~--~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll  328 (704)
                      ++..++.++++++-. ...++.+.+.+  +++.|+.++.++++.++..|..+|+|+++ +.+.+..+.+.|.+|.+++++
T Consensus       224 vqyycttaisnIaVd-~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlas-dt~Yq~eiv~ag~lP~lv~Ll  301 (550)
T KOG4224|consen  224 VQYYCTTAISNIAVD-RRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLAS-DTEYQREIVEAGSLPLLVELL  301 (550)
T ss_pred             HHHHHHHHhhhhhhh-HHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcc-cchhhhHHHhcCCchHHHHHH
Confidence            999999999999855 67778888877  99999999999999999999999999986 778888899999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCC-hhHHHHHHHHHHHccc-CCchhhHHHhhCCcccc
Q 005282          329 QSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKN-GSLQHNAAFALYGLAD-NEDNVADLVRVGGVQKL  406 (704)
Q Consensus       329 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~-~~v~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~l  406 (704)
                      +++.-........++.|++.++-+...+++.|++.+|+++|..++ ++++..|..+|++|+. ...++..|.++|+++. 
T Consensus       302 qs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~k-  380 (550)
T KOG4224|consen  302 QSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPK-  380 (550)
T ss_pred             hCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHH-
Confidence            998777777778999999999999999999999999999998765 5599999999999997 7778899998888665 


Q ss_pred             cccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHHHHHHHHhccCCCccceeeecCCcHHHHHHHHhh
Q 005282          407 QDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPDDCKTIFIDNNGLELLLGLLES  486 (704)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~ll~~  486 (704)
                                                      +..++.++...+|.....++..|+.++..+..+.+.|.++.|+.++.+
T Consensus       381 --------------------------------l~eL~lD~pvsvqseisac~a~Lal~d~~k~~lld~gi~~iLIp~t~s  428 (550)
T KOG4224|consen  381 --------------------------------LIELLLDGPVSVQSEISACIAQLALNDNDKEALLDSGIIPILIPWTGS  428 (550)
T ss_pred             --------------------------------HHHHHhcCChhHHHHHHHHHHHHHhccccHHHHhhcCCcceeecccCc
Confidence                                            566788889999999999999999999999999999999999999999


Q ss_pred             cchhhhhhHHHHHHHHhhhcCCCCCCCCCCCCCc
Q 005282          487 TSVKQREESSVALYKLATKATSLSPMDAAPPSPT  520 (704)
Q Consensus       487 ~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~  520 (704)
                      .+.+++-.|+.+|.|++++...|..+.-.|.+|.
T Consensus       429 ~s~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~  462 (550)
T KOG4224|consen  429 ESEEVRGNAAAALINLSSDVEHYARVIEAWDHPV  462 (550)
T ss_pred             cchhhcccHHHHHHhhhhhhHHHHHHHHHhcCcc
Confidence            9999999999999999999887766655454444

>PHA02713 hypothetical protein; Provisional

Probab=99.93  E-value=8.3e-26  Score=243.36  Aligned_cols=161  Identities=18%  Similarity=0.292  Sum_probs=150.3

Q ss_pred             hHHhhhcCCCcccEEEEEc-CeEeehhHHHHhhcCHHHHHhhcCCCCCCC-CCceEcCCCCHHHHHHHHHHHhcCccccC
Q 005282          525 LGEQFVNNPTLSDVTFVVE-GKQFYAHRICLLASSDAFRAMFDGGYKEKN-AKDVEIPNIRWNVFELMMRFIYTGNVDVS  602 (704)
Q Consensus       525 l~~~~~~~~~~~d~~~~~~-~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~-~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~  602 (704)
                      ..+.++.++.+|||++.++ |++|+|||.||+++|+||++||.++++|.. +.+|.|.++++++|+.+|+|+|||+  ++
T Consensus        15 ~l~~lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v~~~~~~~ll~y~Yt~~--i~   92 (557)
T PHA02713         15 NISNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMFDKDAVKNIVQYLYNRH--IS   92 (557)
T ss_pred             HHHHHHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccCCHHHHHHHHHHhcCCC--CC
Confidence            3478999999999999997 899999999999999999999999999864 7899999999999999999999997  68


Q ss_pred             hhhHHHHHHHHhhhChHhHHHHHHHHHHhhCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCChhhhccchhcH
Q 005282          603 VDIAQDLLRAADQYLLEGLKRLCEYSIAQIISVENIMLMYELSEAYNATTLKQSCILFILEKFDKMRNKPWFFRLIRCVL  682 (704)
Q Consensus       603 ~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~L~~~~~  682 (704)
                      .+++.+++.+|++|+++.+++.|++||.++++++||+.++.++..+++..|.+.|.+|+.+||.++.++++|.+|+.+.+
T Consensus        93 ~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~~~NCl~i~~~~~~~~~~~L~~~a~~~i~~~f~~v~~~~ef~~L~~~~l  172 (557)
T PHA02713         93 SMNVIDVLKCADYLLIDDLVTDCESYIKDYTNHDTCIYMYHRLYEMSHIPIVKYIKRMLMSNIPTLITTDAFKKTVFEIL  172 (557)
T ss_pred             HHHHHHHHHHHHHHCHHHHHHHHHHHHHhhCCccchHHHHHHHHhccchHHHHHHHHHHHHHHHHHhCChhhhhCCHHHH
Confidence            99999999999999999999999999999999999999999999999989999999999999999999999999987755


Q ss_pred             HHHHH
Q 005282          683 PEIRN  687 (704)
Q Consensus       683 ~~l~~  687 (704)
                      .+++.
T Consensus       173 ~~lL~  177 (557)
T PHA02713        173 FDIIS  177 (557)
T ss_pred             HHHhc
Confidence            55543

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=99.93  E-value=2.9e-25  Score=237.60  Aligned_cols=163  Identities=27%  Similarity=0.397  Sum_probs=156.6

Q ss_pred             hHHhhhcCCCcccEEEEEcCeEeehhHHHHhhcCHHHHHhhcCCCCCCCCCceEcCCCCHHHHHHHHHHHhcCccccChh
Q 005282          525 LGEQFVNNPTLSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFIYTGNVDVSVD  604 (704)
Q Consensus       525 l~~~~~~~~~~~d~~~~~~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~  604 (704)
                      ..+.++..+.+|||++.+++++|+|||.||++.||||++||.++++|+.+.+|.+.+++++.+..+++|+|||.+.++.+
T Consensus        26 ~l~~lr~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~~v~~~~l~~ll~y~Yt~~i~i~~~  105 (571)
T KOG4441|consen   26 GLNELREEGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLEGVDPETLELLLDYAYTGKLEISED  105 (571)
T ss_pred             HHHHHHHhCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCcccccceEEEEecCCHHHHHHHHHHhhcceEEechH
Confidence            34789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHhhhChHhHHHHHHHHHHhhCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCChhhhccchhcHHH
Q 005282          605 IAQDLLRAADQYLLEGLKRLCEYSIAQIISVENIMLMYELSEAYNATTLKQSCILFILEKFDKMRNKPWFFRLIRCVLPE  684 (704)
Q Consensus       605 ~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~L~~~~~~~  684 (704)
                      ++++++.+|++||++.+.+.|.+||.+.++++||+.+..+|+.|++.+|.+.+..|+.+||.++..+++|..||.+.+.+
T Consensus       106 nVq~ll~aA~~lQi~~v~~~C~~fL~~~l~~~Nclgi~~~a~~~~~~~L~~~a~~~i~~~F~~v~~~eefl~L~~~~l~~  185 (571)
T KOG4441|consen  106 NVQELLEAASLLQIPEVVDACCEFLESQLDPSNCLGIRRFAELHSCTELLEVADEYILQHFAEVSKTEEFLLLSLEELIG  185 (571)
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccHHhhCCCHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998886555


Q ss_pred             HHH
Q 005282          685 IRN  687 (704)
Q Consensus       685 l~~  687 (704)
                      ++.
T Consensus       186 ll~  188 (571)
T KOG4441|consen  186 LLS  188 (571)
T ss_pred             hcc
Confidence            543

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.92  E-value=1.2e-22  Score=216.79  Aligned_cols=379  Identities=19%  Similarity=0.236  Sum_probs=317.2

Q ss_pred             HHHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHcCCcH
Q 005282           67 AAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALP  146 (704)
Q Consensus        67 ~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~  146 (704)
                      ..+.++..|.|++.++.+...+.+.|+++.|+++|++.+.          ++...+..+|.+|+-..+++..+.+.|+++
T Consensus       265 Llrv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~----------ellil~v~fLkkLSi~~ENK~~m~~~giV~  334 (708)
T PF05804_consen  265 LLRVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENE----------ELLILAVTFLKKLSIFKENKDEMAESGIVE  334 (708)
T ss_pred             HHHHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCH----------HHHHHHHHHHHHHcCCHHHHHHHHHcCCHH
Confidence            3457788999999999999999999999999999998865          899999999999998889999999999999


Q ss_pred             HHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCch
Q 005282          147 HLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDE  226 (704)
Q Consensus       147 ~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~  226 (704)
                      .|.+++.+.+.        +++..++.+|.|++. ++..|..++..|++|.|+.+|.++  ..+..++.+|++++. +++
T Consensus       335 kL~kLl~s~~~--------~l~~~aLrlL~NLSf-d~~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~-dd~  402 (708)
T PF05804_consen  335 KLLKLLPSENE--------DLVNVALRLLFNLSF-DPELRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSM-DDE  402 (708)
T ss_pred             HHHHHhcCCCH--------HHHHHHHHHHHHhCc-CHHHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhcc-CHh
Confidence            99999998765        899999999999997 777899999999999999999865  466779999999997 788


Q ss_pred             hhHHhHhcCChHHHHHhhc-CCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHh
Q 005282          227 NKKLIVECNALPTLVLMLR-SEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFA  305 (704)
Q Consensus       227 ~~~~~~~~~~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~  305 (704)
                      .+..+...+++|.+++++. .+++.+...++.++.|++.+ +.+.+.+.+.++++.|+.........   .....+.|++
T Consensus       403 ~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~-~rnaqlm~~g~gL~~L~~ra~~~~D~---lLlKlIRNiS  478 (708)
T PF05804_consen  403 ARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALN-KRNAQLMCEGNGLQSLMKRALKTRDP---LLLKLIRNIS  478 (708)
T ss_pred             hHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcC-HHHHHHHHhcCcHHHHHHHHHhcccH---HHHHHHHHHH
Confidence            9999999999999999765 46777888889999999976 66678888889999999776543332   2346889999


Q ss_pred             ccCCcchHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCCchhhhHHh-hCChHHHHHhhcCC--ChhHHHHHH
Q 005282          306 AADSNSKVHIVQRGAVRPLIEMLQS-PDSQLKEMSAFALGRLAQDTHNQAGIAQ-DGGILPLLKLLDSK--NGSLQHNAA  381 (704)
Q Consensus       306 ~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~~~L~~ll~~~--~~~v~~~a~  381 (704)
                      .+++..+..+.  +.+..|+..+.+ .+.+....+.++|+|+...+..-..+++ .+.++.+.++|..+  .+++.-.++
T Consensus       479 ~h~~~~k~~f~--~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~V  556 (708)
T PF05804_consen  479 QHDGPLKELFV--DFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVV  556 (708)
T ss_pred             hcCchHHHHHH--HHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHH
Confidence            87655555443  468888888876 4678889999999999977655556665 58888899999654  557889999


Q ss_pred             HHHHHcccCCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHh--hccHHHHHHHHHHHH
Q 005282          382 FALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLR--VADRAVKRRVTLALA  459 (704)
Q Consensus       382 ~~L~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~--~~~~~v~~~a~~~L~  459 (704)
                      ..++.++.++++...+.+.|.++.                                 |+.++.  .+|.++..+.+.++.
T Consensus       557 i~~gtla~d~~~A~lL~~sgli~~---------------------------------Li~LL~~kqeDdE~VlQil~~f~  603 (708)
T PF05804_consen  557 ILLGTLASDPECAPLLAKSGLIPT---------------------------------LIELLNAKQEDDEIVLQILYVFY  603 (708)
T ss_pred             HHHHHHHCCHHHHHHHHhCChHHH---------------------------------HHHHHHhhCchHHHHHHHHHHHH
Confidence            999999999999999998877655                                 445554  457889999999999


Q ss_pred             hccCCCccceeeec-CCcHHHHHHHHhhcchhhhhhHHHHHHHHhhhc
Q 005282          460 HLCAPDDCKTIFID-NNGLELLLGLLESTSVKQREESSVALYKLATKA  506 (704)
Q Consensus       460 ~l~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~  506 (704)
                      ++..++..+..+.+ .+++..|+.++.+.|+.+++.|-.+|--++...
T Consensus       604 ~ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d  651 (708)
T PF05804_consen  604 QLLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYD  651 (708)
T ss_pred             HHHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhC
Confidence            99777777766655 577788999999999999999999998888755

>PHA02790 Kelch-like protein; Provisional

Probab=99.92  E-value=3.3e-25  Score=235.54  Aligned_cols=150  Identities=18%  Similarity=0.197  Sum_probs=139.5

Q ss_pred             hhhcCCCcccEEEEEcCeEeehhHHHHhhcCHHHHHhhcCCCCCCCCCceEc--CCCCHHHHHHHHHHHhcCccccChhh
Q 005282          528 QFVNNPTLSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEI--PNIRWNVFELMMRFIYTGNVDVSVDI  605 (704)
Q Consensus       528 ~~~~~~~~~d~~~~~~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~l--~~~~~~~~~~~l~~~Y~~~~~~~~~~  605 (704)
                      .++..+.+|||.+.+|+ +|+|||.||++.|||||+||+++++|+.. +|.+  .++++++++.+|+|+|||++.++.++
T Consensus        15 ~~~~~~~~~~~~~~~~~-~~~~HR~VLAa~S~YFraMF~~~~~Es~~-~v~~~~~~v~~~~l~~lldy~YTg~l~it~~n   92 (480)
T PHA02790         15 ALSMTKKFKTIIEAIGG-NIIVNSTILKKLSPYFRTHLRQKYTKNKD-PVTRVCLDLDIHSLTSIVIYSYTGKVYIDSHN   92 (480)
T ss_pred             HHHhhhhhceEEEEcCc-EEeeehhhhhhcCHHHHHHhcCCcccccc-ceEEEecCcCHHHHHHHHHhheeeeEEEeccc
Confidence            45677889999876655 89999999999999999999999999854 5655  38999999999999999999999999


Q ss_pred             HHHHHHHHhhhChHhHHHHHHHHHHhhCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCC--hhhhccch
Q 005282          606 AQDLLRAADQYLLEGLKRLCEYSIAQIISVENIMLMYELSEAYNATTLKQSCILFILEKFDKMRNK--PWFFRLIR  679 (704)
Q Consensus       606 ~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~--~~f~~L~~  679 (704)
                      +++++.+|++|+++.+++.|++||.+.++++||+.++.+|+.|++++|.+.+.+||.+||.++.++  ++|..||.
T Consensus        93 V~~ll~aA~~Lqi~~v~~~C~~fL~~~l~~~NCl~i~~~A~~y~~~~L~~~a~~fi~~nF~~v~~~~~~ef~~L~~  168 (480)
T PHA02790         93 VVNLLRASILTSVEFIIYTCINFILRDFRKEYCVECYMMGIEYGLSNLLCHTKDFIAKHFLELEDDIIDNFDYLSM  168 (480)
T ss_pred             HHHHHHHHHHhChHHHHHHHHHHHHhhCCcchHHHHHHHHHHhCHHHHHHHHHHHHHHhHHHHhcccchhhhhCCH
Confidence            999999999999999999999999999999999999999999999999999999999999999986  89988874

>PHA03098 kelch-like protein; Provisional

Probab=99.92  E-value=1.3e-24  Score=237.19  Aligned_cols=151  Identities=25%  Similarity=0.464  Sum_probs=144.9

Q ss_pred             CCCcccEEEEE--cCeEeehhHHHHhhcCHHHHHhhcCCCCCCCCCceEcCCCCHHHHHHHHHHHhcCccccChhhHHHH
Q 005282          532 NPTLSDVTFVV--EGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFIYTGNVDVSVDIAQDL  609 (704)
Q Consensus       532 ~~~~~d~~~~~--~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~~~~l  609 (704)
                      ++.+|||.+.+  +|++|+|||.||+++|+||++||.++++   +.+|.+++ ++++|+.+|+|+|||++.++.+++.++
T Consensus         6 ~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~---~~~i~l~~-~~~~~~~~l~y~Ytg~~~i~~~~~~~l   81 (534)
T PHA03098          6 LQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK---ENEINLNI-DYDSFNEVIKYIYTGKINITSNNVKDI   81 (534)
T ss_pred             cCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC---CceEEecC-CHHHHHHHHHHhcCCceEEcHHHHHHH
Confidence            88999999998  9999999999999999999999999988   46899999 999999999999999999999999999


Q ss_pred             HHHHhhhChHhHHHHHHHHHHhhCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCChhhhccchhcHHHHH
Q 005282          610 LRAADQYLLEGLKRLCEYSIAQIISVENIMLMYELSEAYNATTLKQSCILFILEKFDKMRNKPWFFRLIRCVLPEIR  686 (704)
Q Consensus       610 l~~A~~~~~~~l~~~c~~~l~~~~~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~L~~~~~~~l~  686 (704)
                      +.+|++|+++.|++.|+++|.+.++.+||+.++.+|..|++..|.+.|.+||.+||.++.++++|.+|+.+.+.+|+
T Consensus        82 l~~A~~l~~~~l~~~C~~~l~~~l~~~nc~~~~~~a~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~l~~~~l~~ll  158 (534)
T PHA03098         82 LSIANYLIIDFLINLCINYIIKIIDDNNCIDIYRFSFFYGCKKLYSAAYNYIRNNIELIYNDPDFIYLSKNELIKIL  158 (534)
T ss_pred             HHHHHHhCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCchhhcCCHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999988666654

>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]

Probab=99.91  E-value=1.4e-24  Score=204.79  Aligned_cols=161  Identities=31%  Similarity=0.538  Sum_probs=154.1

Q ss_pred             HhhhcCCCcccEEEEEcCeEeehhHHHHhhcCHHHHHhhcCCCCCCCCCceEcCCCCHHHHHHHHHHHhcCcccc---Ch
Q 005282          527 EQFVNNPTLSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFIYTGNVDV---SV  603 (704)
Q Consensus       527 ~~~~~~~~~~d~~~~~~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~---~~  603 (704)
                      ..++....++||.|++++++|+|||.||++||+|||+|+.|+|.|+.+..|++.+...++|+.+|+|+|+|++.+   ..
T Consensus        36 ~~l~~~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq~t~~eAF~~lLrYiYtg~~~l~~~~e  115 (620)
T KOG4350|consen   36 DELFTSEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQETNSEAFRALLRYIYTGKIDLAGVEE  115 (620)
T ss_pred             HHHhhcCcccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhhhhcccccccccHHHHHHHHHHHhhcceecccchH
Confidence            567788999999999999999999999999999999999999999999999999999999999999999999985   56


Q ss_pred             hhHHHHHHHHhhhChHhHHHHHHHHHHhhCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCChhhhccchhcHH
Q 005282          604 DIAQDLLRAADQYLLEGLKRLCEYSIAQIISVENIMLMYELSEAYNATTLKQSCILFILEKFDKMRNKPWFFRLIRCVLP  683 (704)
Q Consensus       604 ~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~L~~~~~~  683 (704)
                      +...+.|.+|++|+..+|.....+++++.+..+|+|.++..|..|+.++|.+.|..|+.+|.+++..++.|..|+++.+.
T Consensus       116 d~lld~LslAh~Ygf~~Le~aiSeYl~~iL~~~NvCmifdaA~ly~l~~Lt~~C~mfmDrnA~~lL~~~sFn~LSk~sL~  195 (620)
T KOG4350|consen  116 DILLDYLSLAHRYGFIQLETAISEYLKEILKNENVCMIFDAAYLYQLTDLTDYCMMFMDRNADQLLEDPSFNRLSKDSLK  195 (620)
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHcccceeeeeeHHHHhcchHHHHHHHHHHhcCHHhhhcCcchhhhhHHHHH
Confidence            77899999999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             HHHH
Q 005282          684 EIRN  687 (704)
Q Consensus       684 ~l~~  687 (704)
                      +++.
T Consensus       196 e~l~  199 (620)
T KOG4350|consen  196 ELLA  199 (620)
T ss_pred             HHHh
Confidence            8764

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.89  E-value=4.6e-20  Score=197.26  Aligned_cols=357  Identities=20%  Similarity=0.246  Sum_probs=295.6

Q ss_pred             HHHHHHHhhhccCCchhhHHHHHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHH
Q 005282           47 IRAQIDILNSKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFAL  126 (704)
Q Consensus        47 ~~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L  126 (704)
                      ...++..|+.++.+++  .....-++..|.+++-..+++..+.+.|+++.|.+++.+++.          +++..++++|
T Consensus       288 ~~~iV~~Lv~~Ldr~n--~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~----------~l~~~aLrlL  355 (708)
T PF05804_consen  288 NKGIVSLLVKCLDREN--EELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENE----------DLVNVALRLL  355 (708)
T ss_pred             hcCCHHHHHHHHcCCC--HHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCH----------HHHHHHHHHH
Confidence            4556777777776543  446778899999999999999999999999999999999875          8999999999


Q ss_pred             HhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhc-CC
Q 005282          127 GLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLK-FV  205 (704)
Q Consensus       127 ~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~  205 (704)
                      .||+.+++.|..+++.|++|.|+.+|.++          ..+..++.+|++++. +++.+..+...+++|.+++++- .+
T Consensus       356 ~NLSfd~~~R~~mV~~GlIPkLv~LL~d~----------~~~~val~iLy~LS~-dd~~r~~f~~TdcIp~L~~~Ll~~~  424 (708)
T PF05804_consen  356 FNLSFDPELRSQMVSLGLIPKLVELLKDP----------NFREVALKILYNLSM-DDEARSMFAYTDCIPQLMQMLLENS  424 (708)
T ss_pred             HHhCcCHHHHHHHHHCCCcHHHHHHhCCC----------chHHHHHHHHHHhcc-CHhhHHHHhhcchHHHHHHHHHhCC
Confidence            99999999999999999999999999864          456779999999997 6678999999999999999766 46


Q ss_pred             CHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHH
Q 005282          206 DVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGL  285 (704)
Q Consensus       206 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~l  285 (704)
                      ++.+...++..+.|++. ++.+.+.+.+.|+++.|++........   ..+..+.|++.+++..+..+.  +++..|+.+
T Consensus       425 ~~~v~~eliaL~iNLa~-~~rnaqlm~~g~gL~~L~~ra~~~~D~---lLlKlIRNiS~h~~~~k~~f~--~~i~~L~~~  498 (708)
T PF05804_consen  425 EEEVQLELIALLINLAL-NKRNAQLMCEGNGLQSLMKRALKTRDP---LLLKLIRNISQHDGPLKELFV--DFIGDLAKI  498 (708)
T ss_pred             CccccHHHHHHHHHHhc-CHHHHHHHHhcCcHHHHHHHHHhcccH---HHHHHHHHHHhcCchHHHHHH--HHHHHHHHH
Confidence            67788888999999996 888999999999999999876543322   245699999988655444443  477788887


Q ss_pred             hcCC-ChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCC--CHHHHHHHHHHHHHhhcCCchhhhHHhhCCh
Q 005282          286 LSSS-CSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSP--DSQLKEMSAFALGRLAQDTHNQAGIAQDGGI  362 (704)
Q Consensus       286 l~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~  362 (704)
                      +..+ +.+...+++.+|+|+...+.+....+.+.+++|.|.+.|..+  ++++.-.++..++.++..+.....+...|.+
T Consensus       499 v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli  578 (708)
T PF05804_consen  499 VSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSGLI  578 (708)
T ss_pred             hhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCChH
Confidence            7654 567789999999999875555555555679999999999753  4578888899999999988888889999999


Q ss_pred             HHHHHhhcC--CChhHHHHHHHHHHHcccCCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHH
Q 005282          363 LPLLKLLDS--KNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLL  440 (704)
Q Consensus       363 ~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  440 (704)
                      +.|+.++.+  .|.+.....+.++..+..+++.+..+++...                                +...++
T Consensus       579 ~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~~~--------------------------------~~~yli  626 (708)
T PF05804_consen  579 PTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKETE--------------------------------IPAYLI  626 (708)
T ss_pred             HHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhccc--------------------------------hHHHHH
Confidence            999999965  4678889999999999999999988887433                                345789


Q ss_pred             HHHhhccHHHHHHHHHHHHhccCC
Q 005282          441 YLLRVADRAVKRRVTLALAHLCAP  464 (704)
Q Consensus       441 ~ll~~~~~~v~~~a~~~L~~l~~~  464 (704)
                      .++++.|+.++..|-.+|--++..
T Consensus       627 dL~~d~N~~ir~~~d~~Ldii~e~  650 (708)
T PF05804_consen  627 DLMHDKNAEIRKVCDNALDIIAEY  650 (708)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHh
Confidence            999999999999988888877553

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.84  E-value=1e-18  Score=167.52  Aligned_cols=427  Identities=18%  Similarity=0.170  Sum_probs=310.5

Q ss_pred             HHHHHHHHHHHhhcChhHH----HHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHHHHH
Q 005282           67 AAKTASHALVEFAKNEEIV----SLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQIIVD  141 (704)
Q Consensus        67 ~~~~a~~~L~~l~~~~~~~----~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~~~  141 (704)
                      +...+..++...+.++-.+    +.-+++++++.|.+...+++.          ++-.+++++|+|+| ++.+.|..+.+
T Consensus        58 v~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d~----------ev~~Q~~RaLgNiCydn~E~R~a~~~  127 (604)
T KOG4500|consen   58 VYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPDT----------EVHEQCFRALGNICYDNNENRAAFFN  127 (604)
T ss_pred             hhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCcc----------cHHHHHHHHHhhhhccCchhHHHHHh
Confidence            4556667777777654443    444566777777777777754          89999999999999 99999999999


Q ss_pred             cCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhc--CCCHHHHHHHHHHHHH
Q 005282          142 TGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLK--FVDVKVQRAAAGALRT  219 (704)
Q Consensus       142 ~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~~~~~a~~~L~~  219 (704)
                      .||-+.++.+|+........ ...+....++..|.|...++...+.++.+.|+++.|...+.  ..+....+..+....+
T Consensus       128 lgGaqivid~L~~~cs~d~~-ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~n  206 (604)
T KOG4500|consen  128 LGGAQIVIDVLKPYCSKDNP-ANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFN  206 (604)
T ss_pred             cCCceehHhhhccccccCCc-cHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhcccc
Confidence            99999999999875432211 11377788888999999899999999999999999988876  4555555555555555


Q ss_pred             hccC-CchhhHHhHhcCChHHHHHhhcC-CCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcC-CChhH---
Q 005282          220 LAFK-NDENKKLIVECNALPTLVLMLRS-EDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSS-SCSES---  293 (704)
Q Consensus       220 l~~~-~~~~~~~~~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~~---  293 (704)
                      +..- .........+....-.+++++.+ .++++.+.+...+...+++ +..+-.+.+.|.+.-++.+++. ++..-   
T Consensus       207 lls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aen-d~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d  285 (604)
T KOG4500|consen  207 LLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAEN-DLVKLSLAQNGLLEDSIDLVRNMKDFTKKTD  285 (604)
T ss_pred             HHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcC-cceeeehhhcchHHHHHHHHHhcccccchHH
Confidence            5421 11223444556667778888864 5778889999999999866 6677778889999999998875 21111   


Q ss_pred             ----HHHHHHHHHHHhccCCcchHHHHhcC-ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHh
Q 005282          294 ----KREAALLLGQFAAADSNSKVHIVQRG-AVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKL  368 (704)
Q Consensus       294 ----~~~a~~~L~~l~~~~~~~~~~~~~~~-~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~l  368 (704)
                          ...++....-+..+++ ....+...+ +++.+.+++.+.+......+..+++|+++.+.++..+++.+.+..|+.+
T Consensus       286 ~~~l~k~~~el~vllltGDe-SMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~  364 (604)
T KOG4500|consen  286 MLNLFKRIAELDVLLLTGDE-SMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISC  364 (604)
T ss_pred             HHHHHHhhhhHhhhhhcCch-HHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHH
Confidence                1222222222333343 334444444 8999999999999999999999999999999999999999999999999


Q ss_pred             hc-----CCChhHHHHHHHHHHHcccCCchhhHHHhhCCccccccccccccc----chHHHHHHHHHHHHHh------hc
Q 005282          369 LD-----SKNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQP----TKDCVARTLKRLEEKV------HG  433 (704)
Q Consensus       369 l~-----~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~----~~~~~~~~~~~~~~~~------~~  433 (704)
                      +.     +++.+++..++.+|+|+.-.-.++..+..+|..+.++...-...+    ..-.-.+.+....+.+      +.
T Consensus       365 l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~  444 (604)
T KOG4500|consen  365 LMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNP  444 (604)
T ss_pred             HHHhcCCCccchhHHHHHHHHHhccccCCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCH
Confidence            83     357789999999999999999999999999998876532211111    1111112222222211      44


Q ss_pred             chhHHHHHHHhhccHH-HHHHHHHHHHhccC---CCccceeeecCCcHHHHHHHHhhcchhhhhhHHHHHHHHhhhc
Q 005282          434 RVLNHLLYLLRVADRA-VKRRVTLALAHLCA---PDDCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLATKA  506 (704)
Q Consensus       434 ~~~~~L~~ll~~~~~~-v~~~a~~~L~~l~~---~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~  506 (704)
                      ..+..|+.+.+++|-. +.....+.+..+..   ..+....+.+.|||+.++.++.+.|-..|..|..+|+.++..-
T Consensus       445 ~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~kdv~~tvpksg~ik~~Vsm~t~~hi~mqnEalVal~~~~~~y  521 (604)
T KOG4500|consen  445 ELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKYKDVILTVPKSGGIKEKVSMFTKNHINMQNEALVALLSTESKY  521 (604)
T ss_pred             HHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHhhhhHhhccccccHHHHHHHHHHhhHHHhHHHHHHHHHHHHHh
Confidence            6778889998887754 55566666666633   3344456678899999999999999999999999998877643

>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]

Probab=99.81  E-value=2.9e-19  Score=152.40  Aligned_cols=194  Identities=24%  Similarity=0.423  Sum_probs=154.7

Q ss_pred             HHhhcchhhhhhHHHHHHHHhhhcCCCCCCCCCCCCCchhhchHHhhhcCCCcccEEEEEc---CeEeehhHHHHhhcCH
Q 005282          483 LLESTSVKQREESSVALYKLATKATSLSPMDAAPPSPTQQVYLGEQFVNNPTLSDVTFVVE---GKQFYAHRICLLASSD  559 (704)
Q Consensus       483 ll~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d~~~~~~---~~~~~~hk~iL~~~s~  559 (704)
                      .+++.+.+.++.++ .|..++.+..      ++.+.+.....+...++..+.++|+.|.++   ++.+++||.||++||+
T Consensus        21 aLQke~~E~~kkca-ll~a~a~keS------s~dSF~SRLLaitadL~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD   93 (280)
T KOG4591|consen   21 ALQKEHAELEKKCA-LLAALACKES------SPDSFISRLLAITADLLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSD   93 (280)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHhccC------CchhHHHHHHHHHHHHhhcccccceeEEecCCccccCchhhhhhhhhcc
Confidence            34556666665543 3334443331      111233444555578899999999999997   4789999999999999


Q ss_pred             HHHHhhcCCCCCCCCCceEcCCCCHHHHHHHHHHHhcCcccc--ChhhHHHHHHHHhhhChHhHHHHHHHHHHhhCChhh
Q 005282          560 AFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFIYTGNVDV--SVDIAQDLLRAADQYLLEGLKRLCEYSIAQIISVEN  637 (704)
Q Consensus       560 ~f~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~--~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~~  637 (704)
                      |++  |.++..|. +.+..+.|.++++|...++|+||+.+++  .++.+.++.+.|++|+++.|++.|++-+...++.+|
T Consensus        94 ~Wk--faN~~dek-se~~~~dDad~Ea~~t~iRWIYTDEidfk~dD~~L~el~e~An~FqLe~Lke~C~k~l~a~l~V~N  170 (280)
T KOG4591|consen   94 FWK--FANGGDEK-SEELDLDDADFEAFHTAIRWIYTDEIDFKEDDEFLLELCELANRFQLELLKERCEKGLGALLHVDN  170 (280)
T ss_pred             hhh--hccCCCcc-hhhhcccccCHHHHHHhheeeeccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHhh
Confidence            987  44433332 3467788999999999999999999886  455688999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCChhhhccchhcHHHHHH
Q 005282          638 IMLMYELSEAYNATTLKQSCILFILEKFDKMRNKPWFFRLIRCVLPEIRN  687 (704)
Q Consensus       638 ~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~L~~~~~~~l~~  687 (704)
                      |+++|++|++.+...|...|...|+.+|.++. .++|..+++..+.++.+
T Consensus       171 CIk~Ye~AEe~n~~qL~n~~~eiIA~~W~dL~-~a~FaqMs~aLLYklId  219 (280)
T KOG4591|consen  171 CIKFYEFAEELNARQLMNVAAEIIAGAWDDLG-KADFAQMSAALLYKLID  219 (280)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHhhccccC-hHHHHhccHHHHHHHHc
Confidence            99999999999999999999999999999975 57899998886666554

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.80  E-value=5.7e-18  Score=183.15  Aligned_cols=365  Identities=20%  Similarity=0.206  Sum_probs=281.0

Q ss_pred             HHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHHHHHcCCcHHH
Q 005282           70 TASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQIIVDTGALPHL  148 (704)
Q Consensus        70 ~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~~~~g~l~~L  148 (704)
                      +-.+.+..++..++-+..+...|+++.|+++|.-++.       -+.+.+.+|-.+|.||. ..|+....-.+.    .+
T Consensus       213 e~ar~fLemSss~esCaamR~SgCLpLLvQilH~~d~-------~~kear~~A~aALHNIVhSqPD~kr~RRE~----kv  281 (2195)
T KOG2122|consen  213 EMARTFLEMSSSPESCAAMRRSGCLPLLVQILHGPDD-------EDKEARKRASAALHNIVHSQPDEKRGRREK----KV  281 (2195)
T ss_pred             HHHHHHHHhccCchhhHHHHhccchHHHHHHhhCCch-------hhHHHHHHHHHHHHHHhhcCcchhhhHHHH----HH
Confidence            3468889999999999999999999999999998875       25689999999999999 666643322221    22


Q ss_pred             HHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhh
Q 005282          149 VSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENK  228 (704)
Q Consensus       149 ~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~  228 (704)
                      +.+|.            .++.+|..+-..+-...+..                .-.++..-.-.|+.+|..+++ +++.|
T Consensus       282 L~lLe------------QIraYC~~~~~~lqar~~~~----------------apa~~~H~lcaA~~~lMK~SF-DEEhR  332 (2195)
T KOG2122|consen  282 LHLLE------------QIRAYCETCWTWLQARGPAI----------------APASDEHQLCAALCTLMKLSF-DEEHR  332 (2195)
T ss_pred             HHHHH------------HHHHHHHHHHHHHHhcCCCC----------------CCcccchhhHHHHHHHHHhhc-cHHHH
Confidence            23332            45556555444443222211                111222333478888889997 89999


Q ss_pred             HHhHhcCChHHHHHhhcC-----C-------CHHHHHHHHHHHHHHhcCChhhHHHHH-HcCCHHHHHHHhcCCChhHHH
Q 005282          229 KLIVECNALPTLVLMLRS-----E-------DASVHFEAVGVIGNLVHSSPSIKKEVI-LAGALQPVIGLLSSSCSESKR  295 (704)
Q Consensus       229 ~~~~~~~~i~~L~~lL~~-----~-------~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~ll~~~~~~~~~  295 (704)
                      ..+.+.|+++.+-.++.-     .       .-.+|+.+..+|.||+.++...+..+. ..|++..++..|.+...++..
T Consensus       333 ~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~Q  412 (2195)
T KOG2122|consen  333 HAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQ  412 (2195)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHH
Confidence            999999999999888761     1       236899999999999999877777666 478999999999998889999


Q ss_pred             HHHHHHHHHhccCCcchH-HHHhcCChHHHHHhh-CCCCHHHHHHHHHHHHHhhcC-CchhhhHHhh-CChHHHHHhhcC
Q 005282          296 EAALLLGQFAAADSNSKV-HIVQRGAVRPLIEML-QSPDSQLKEMSAFALGRLAQD-THNQAGIAQD-GGILPLLKLLDS  371 (704)
Q Consensus       296 ~a~~~L~~l~~~~~~~~~-~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~-~~~~~L~~ll~~  371 (704)
                      ..+.+|.||+..-+.+.. .+.+.|-+..|.... +.......+.++.+||||+.+ .+|+..|... |++..|+.+|.-
T Consensus       413 V~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY  492 (2195)
T KOG2122|consen  413 VYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSY  492 (2195)
T ss_pred             HHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccc
Confidence            999999999866555544 455568888887764 555656778899999999987 5677777664 778889999843


Q ss_pred             ----CChhHHHHHHHHHHHccc----CCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHH
Q 005282          372 ----KNGSLQHNAAFALYGLAD----NEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLL  443 (704)
Q Consensus       372 ----~~~~v~~~a~~~L~~l~~----~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll  443 (704)
                          ....+.+.+.++|.|.++    .+..++.+.+++                                 .+..|++.|
T Consensus       493 ~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~N---------------------------------CLq~LLQ~L  539 (2195)
T KOG2122|consen  493 EGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHN---------------------------------CLQTLLQHL  539 (2195)
T ss_pred             cCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhh---------------------------------HHHHHHHHh
Confidence                345788999999999885    334444444433                                 455678888


Q ss_pred             hhccHHHHHHHHHHHHhc-cCCCccceeeecCCcHHHHHHHHhhcchhhhhhHHHHHHHHhhhcC
Q 005282          444 RVADRAVKRRVTLALAHL-CAPDDCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLATKAT  507 (704)
Q Consensus       444 ~~~~~~v~~~a~~~L~~l-~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~  507 (704)
                      ++..-.+..++|++|+|| +++++.++.+.+.|+++.|..++.+.|..+..-++.+|.||....+
T Consensus       540 KS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~RP  604 (2195)
T KOG2122|consen  540 KSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFRP  604 (2195)
T ss_pred             hhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCCc
Confidence            999889999999999999 7899999999999999999999999999999999999999988764

>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]

Probab=99.79  E-value=1.2e-18  Score=169.60  Aligned_cols=164  Identities=25%  Similarity=0.449  Sum_probs=147.5

Q ss_pred             HhhhcCCCcccEEEEEcC-----eEeehhHHHHhhcCHHHHHhhcCCCCCCCCCceEcCCCCHHHHHHHHHHHhcCcccc
Q 005282          527 EQFVNNPTLSDVTFVVEG-----KQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFIYTGNVDV  601 (704)
Q Consensus       527 ~~~~~~~~~~d~~~~~~~-----~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~  601 (704)
                      -.+++++.++|+.|++++     ..+++||.+|+..|++|.+||++++.+....+|.++|+.+.+|..+|+|+|++.+.+
T Consensus       106 ~~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lpdvepaaFl~~L~flYsdev~~  185 (521)
T KOG2075|consen  106 AALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLPDVEPAAFLAFLRFLYSDEVKL  185 (521)
T ss_pred             HhhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeecCCcChhHhHHHHHHHhcchhhh
Confidence            367889999999999973     689999999999999999999999999978899999999999999999999999999


Q ss_pred             ChhhHHHHHHHHhhhChHhHHHHHHHHHHhhCChhhHHHHHHH-HHHcCCHHHHHHHHHHHHHHHHHhhCChhhhccchh
Q 005282          602 SVDIAQDLLRAADQYLLEGLKRLCEYSIAQIISVENIMLMYEL-SEAYNATTLKQSCILFILEKFDKMRNKPWFFRLIRC  680 (704)
Q Consensus       602 ~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~~~~~~~~~-a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~L~~~  680 (704)
                      ..+++..++.+|++|.++.|.+.|.++|..++.+.|.+..+-- |..++-++|.+.|++-|..+|.+....++|-+....
T Consensus       186 ~~dtvi~tl~~AkKY~VpaLer~CVkflr~~l~~~naf~~L~q~A~lf~ep~Li~~c~e~id~~~~~al~~EGf~did~~  265 (521)
T KOG2075|consen  186 AADTVITTLYAAKKYLVPALERQCVKFLRKNLMADNAFLELFQRAKLFDEPSLISICLEVIDKSFEDALTPEGFCDIDST  265 (521)
T ss_pred             hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhcCHHHHHHHHHHhhhHHHhhhCccceeehhhH
Confidence            9999999999999999999999999999998888887665555 999999999999999999999999999999998733


Q ss_pred             cHHHHHHHHHH
Q 005282          681 VLPEIRNYFTK  691 (704)
Q Consensus       681 ~~~~l~~~~~~  691 (704)
                       ++.+.+.+++
T Consensus       266 -~dt~~evl~r  275 (521)
T KOG2075|consen  266 -RDTYEEVLRR  275 (521)
T ss_pred             -HHHHHHHHhh
Confidence             4444444443

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.79  E-value=1.6e-16  Score=147.84  Aligned_cols=344  Identities=17%  Similarity=0.238  Sum_probs=272.4

Q ss_pred             HHHHHHHHHhhcC----ChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCC
Q 005282          119 EKECAFALGLLAV----KPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDG  194 (704)
Q Consensus       119 ~~~a~~~L~~l~~----~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~  194 (704)
                      -++....|.++++    +..+|-.-...|..+.++-.+..... +    ...+...++.+|..+....|+    +.+..+
T Consensus        76 ~~E~s~ll~~l~d~ck~~~A~r~la~~~ga~~~~it~~~la~~-~----~~~~l~ksL~al~~lt~~qpd----l~da~g  146 (461)
T KOG4199|consen   76 LEETTELLEQLADECKKSLAHRVLAGKNGAHDALITLLELAES-P----NESVLKKSLEAINSLTHKQPD----LFDAEA  146 (461)
T ss_pred             hHHHHHHHHHHHHHHhhhHHHHHHhccCCCcchhhhHHHHhhC-C----chhHHHHHHHHHHHhhcCCcc----hhcccc
Confidence            3445556666662    22233344456788888877764222 1    237888999999999876665    566788


Q ss_pred             cHHHHHHhc--CCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCh----
Q 005282          195 IPPLVELLK--FVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLR-SEDASVHFEAVGVIGNLVHSSP----  267 (704)
Q Consensus       195 i~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~----  267 (704)
                      +..++.+|.  .++.++....+..+..-|..++.+++.+++.++++.+...|. .+...+.+..+|+++-+...++    
T Consensus       147 ~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~  226 (461)
T KOG4199|consen  147 MAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVV  226 (461)
T ss_pred             HHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeee
Confidence            999999987  467788888899999888889999999999999999997665 4555789999999999986643    


Q ss_pred             -----hhHHHHHHcCCHHHHHHHhcC-CChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCC-CCH---HHHH
Q 005282          268 -----SIKKEVILAGALQPVIGLLSS-SCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQS-PDS---QLKE  337 (704)
Q Consensus       268 -----~~~~~~~~~~~l~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~---~v~~  337 (704)
                           .....+...|++..|++.+.- -++.+...++.+|..++. ..+..+.+.+.|++..|++++.+ ++.   +..+
T Consensus       227 fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAV-r~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k  305 (461)
T KOG4199|consen  227 FGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAV-RDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAK  305 (461)
T ss_pred             cchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHH-HHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHH
Confidence                 234557778889999998864 357788899999999986 55677789999999999999986 333   3557


Q ss_pred             HHHHHHHHhhcCCchhhhHHhhCChHHHHHhh--cCCChhHHHHHHHHHHHcc-cCCchhhHHHhhCCcccccccccccc
Q 005282          338 MSAFALGRLAQDTHNQAGIAQDGGILPLLKLL--DSKNGSLQHNAAFALYGLA-DNEDNVADLVRVGGVQKLQDGEFTVQ  414 (704)
Q Consensus       338 ~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll--~~~~~~v~~~a~~~L~~l~-~~~~~~~~l~~~g~i~~l~~~~~~~~  414 (704)
                      .++..|..++..+..+..+++.|+.+.++.++  ++++|.+...++.++.-|+ +.|++...+++.|+-...++      
T Consensus       306 ~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avq------  379 (461)
T KOG4199|consen  306 TCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQ------  379 (461)
T ss_pred             HHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHH------
Confidence            88999999999999999999999999999887  6689999999999999999 59999999999888554322      


Q ss_pred             cchHHHHHHHHHHHHHhhcchhHHHHHHH--hhccHHHHHHHHHHHHhc-cCCCccceeeecCCcHHHHHHHHhhcchhh
Q 005282          415 PTKDCVARTLKRLEEKVHGRVLNHLLYLL--RVADRAVKRRVTLALAHL-CAPDDCKTIFIDNNGLELLLGLLESTSVKQ  491 (704)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~~L~~ll--~~~~~~v~~~a~~~L~~l-~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~  491 (704)
                                                 -+  +.....+|.+|||.|.|+ .++..++..++ ..|++.|++...+.|+.+
T Consensus       380 ---------------------------AmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l-~~GiE~Li~~A~~~h~tc  431 (461)
T KOG4199|consen  380 ---------------------------AMKAHPVAAQVQRNACNMIRNIVVRSAENRTILL-ANGIEKLIRTAKANHETC  431 (461)
T ss_pred             ---------------------------HHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHH-hccHHHHHHHHHhcCccH
Confidence                                       22  233567999999999999 56777777765 469999999999999999


Q ss_pred             hhhHHHHHHHHhhhc
Q 005282          492 REESSVALYKLATKA  506 (704)
Q Consensus       492 ~~~a~~~L~~L~~~~  506 (704)
                      ...|..+|..|.-+.
T Consensus       432 e~~akaALRDLGc~v  446 (461)
T KOG4199|consen  432 EAAAKAALRDLGCDV  446 (461)
T ss_pred             HHHHHHHHHhcCcch
Confidence            999999999987755

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.78  E-value=1.1e-17  Score=174.21  Aligned_cols=360  Identities=23%  Similarity=0.279  Sum_probs=275.6

Q ss_pred             ChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHH
Q 005282           93 AVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRA  171 (704)
Q Consensus        93 ~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a  171 (704)
                      -+|..+.+|...++          .++..|+.-+..+| ++.+.+..+.+.|+|+.|+.+|.....        +++.++
T Consensus       234 ~lpe~i~mL~~q~~----------~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~--------evq~~a  295 (717)
T KOG1048|consen  234 TLPEVISMLMSQDP----------SVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRND--------EVQRQA  295 (717)
T ss_pred             ccHHHHHHHhccCh----------hhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcH--------HHHHHH
Confidence            36777888887765          89999999999999 899999999999999999999999887        999999


Q ss_pred             HHHHHHhhhcChh--hhhhhhccCCcHHHHHHhcC-CCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCC-
Q 005282          172 ADAITNLAHENAN--IKTRVRVEDGIPPLVELLKF-VDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSE-  247 (704)
Q Consensus       172 ~~~L~~l~~~~~~--~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~-  247 (704)
                      +++|.||..++..  ++..+...++++.++++|+. .|.++++.+..+||||+. ++..+..++.. .+..|..-+-.+ 
T Consensus       296 cgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS-~D~lK~~ii~~-al~tLt~~vI~P~  373 (717)
T KOG1048|consen  296 CGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSS-NDALKMLIITS-ALSTLTDNVIIPH  373 (717)
T ss_pred             HHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccc-hhHHHHHHHHH-HHHHHHHhhcccc
Confidence            9999999976655  78889999999999999995 899999999999999996 55555554443 455555543211 


Q ss_pred             -------------CHHHHHHHHHHHHHHhcCChhhHHHHHH-cCCHHHHHHHhc------CCChhHHHHHHHHHHHHhcc
Q 005282          248 -------------DASVHFEAVGVIGNLVHSSPSIKKEVIL-AGALQPVIGLLS------SSCSESKREAALLLGQFAAA  307 (704)
Q Consensus       248 -------------~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~ll~------~~~~~~~~~a~~~L~~l~~~  307 (704)
                                   +..+...+..+|.|++....+.++.+.+ .|.|+.|+..++      ..+....++|+..+.|+.-.
T Consensus       374 Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYr  453 (717)
T KOG1048|consen  374 SGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYR  453 (717)
T ss_pred             cccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCch
Confidence                         2567889999999999877888888876 688999998886      33556678888888888621


Q ss_pred             CC-----c--------------------------chHH----------------------HHhcCChHHHHHhhC-CCCH
Q 005282          308 DS-----N--------------------------SKVH----------------------IVQRGAVRPLIEMLQ-SPDS  333 (704)
Q Consensus       308 ~~-----~--------------------------~~~~----------------------~~~~~~i~~L~~ll~-~~~~  333 (704)
                      -.     .                          ....                      +....++..-+.++. +.+.
T Consensus       454 l~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~  533 (717)
T KOG1048|consen  454 LEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKND  533 (717)
T ss_pred             hhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcch
Confidence            11     0                          0000                      001112233233333 4567


Q ss_pred             HHHHHHHHHHHHhhcCCc-----hhhhH-HhhCChHHHHHhhcCCChhHHHHHHHHHHHcccCCchhhHHHhhCCccccc
Q 005282          334 QLKEMSAFALGRLAQDTH-----NQAGI-AQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQ  407 (704)
Q Consensus       334 ~v~~~a~~~L~~l~~~~~-----~~~~~-~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~g~i~~l~  407 (704)
                      .+.+.++.+|.|++.+..     .+..+ .++.+++.|+++++.++..+.+.++.+|+||+.+..++..|. .++++-| 
T Consensus       534 ~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~lig-k~a~~~l-  611 (717)
T KOG1048|consen  534 NTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIG-KYAIPDL-  611 (717)
T ss_pred             HHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhh-cchHHHH-
Confidence            889999999999996532     22333 677899999999999999999999999999999999998887 3444443 


Q ss_pred             ccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhh------ccHHHHHHHHHHHHhcc-CCCccceeeecCCcHHHH
Q 005282          408 DGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRV------ADRAVKRRVTLALAHLC-APDDCKTIFIDNNGLELL  480 (704)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~------~~~~v~~~a~~~L~~l~-~~~~~~~~l~~~~~i~~L  480 (704)
                                                      +..+..      .+.++...+|.+|.++. .+..+...+.+.+|++.|
T Consensus       612 --------------------------------v~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL  659 (717)
T KOG1048|consen  612 --------------------------------VRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKL  659 (717)
T ss_pred             --------------------------------HHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHH
Confidence                                            333322      23678888999999995 577888888999999999


Q ss_pred             HHHHhh-cchhhhhhHHHHHHHHhhhc
Q 005282          481 LGLLES-TSVKQREESSVALYKLATKA  506 (704)
Q Consensus       481 ~~ll~~-~~~~~~~~a~~~L~~L~~~~  506 (704)
                      +-+..+ .++.+.++|...|..|=.+.
T Consensus       660 ~~I~~s~~S~k~~kaAs~vL~~lW~y~  686 (717)
T KOG1048|consen  660 RLISKSQHSPKEFKAASSVLDVLWQYK  686 (717)
T ss_pred             HHHhcccCCHHHHHHHHHHHHHHHHHH
Confidence            999887 44567777777777665433

>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins

Probab=99.75  E-value=6.2e-18  Score=142.90  Aligned_cols=106  Identities=32%  Similarity=0.649  Sum_probs=95.6

Q ss_pred             HhhhcCCCcccEEEEEc-CeEeehhHHHHhhcCHHHHHhhcCC-CCCCCCCceEcCCCCHHHHHHHHHHHhcCccccC-h
Q 005282          527 EQFVNNPTLSDVTFVVE-GKQFYAHRICLLASSDAFRAMFDGG-YKEKNAKDVEIPNIRWNVFELMMRFIYTGNVDVS-V  603 (704)
Q Consensus       527 ~~~~~~~~~~d~~~~~~-~~~~~~hk~iL~~~s~~f~~~f~~~-~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~-~  603 (704)
                      +++++.+.++|++|.++ |..|+|||.+|+++|+||+.+|.+. +.+....+|.++++++++|..+++|+|+|.+.++ .
T Consensus         2 ~~~~~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~Y~~~~~~~~~   81 (111)
T PF00651_consen    2 NDLFNSNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLPDVSPEAFEAFLEYMYTGEIEINSD   81 (111)
T ss_dssp             HHHHHHTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEETTSCHHHHHHHHHHHHHSEEEEE-T
T ss_pred             hHHHcCCCCCCEEEEECCCEEEeechhhhhccchhhhhcccccccccccccccccccccccccccccccccCCcccCCHH
Confidence            46788899999999999 8999999999999999999999998 5666666899999999999999999999999998 9


Q ss_pred             hhHHHHHHHHhhhChHhHHHHHHHHHHhh
Q 005282          604 DIAQDLLRAADQYLLEGLKRLCEYSIAQI  632 (704)
Q Consensus       604 ~~~~~ll~~A~~~~~~~l~~~c~~~l~~~  632 (704)
                      +++.+++.+|++|+++.|++.|+.+|.+.
T Consensus        82 ~~~~~ll~lA~~~~~~~L~~~~~~~l~~~  110 (111)
T PF00651_consen   82 ENVEELLELADKLQIPELKKACEKFLQES  110 (111)
T ss_dssp             TTHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHhC
Confidence            99999999999999999999999999764

The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....

>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]

Probab=99.74  E-value=1.1e-17  Score=158.79  Aligned_cols=165  Identities=21%  Similarity=0.383  Sum_probs=151.4

Q ss_pred             chhhchHHhhhcCCCcccEEEEEcCeEeehhHHHHhhcCHHHHHhhcCCCCCCCCCceEc----CCCCHHHHHHHHHHHh
Q 005282          520 TQQVYLGEQFVNNPTLSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEI----PNIRWNVFELMMRFIY  595 (704)
Q Consensus       520 ~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~l----~~~~~~~~~~~l~~~Y  595 (704)
                      ..+.+++..++.++..+||.+.+-|.++..||..|+ .|+||++||+|.|+|+++..|.+    |.++..+|...+.-+|
T Consensus        54 ~t~kyiyq~lf~q~enSDv~l~alg~eWrlHk~yL~-QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY  132 (488)
T KOG4682|consen   54 QTQKYIYQNLFLQGENSDVILEALGFEWRLHKPYLF-QSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLY  132 (488)
T ss_pred             HHHHHHHHHHHhcCCCcceehhhccceeeeeeeeee-ccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhh
Confidence            345677788999999999999999999999999999 89999999999999999887766    4699999999999999


Q ss_pred             cCccccChhhHHHHHHHHhhhChHhHHHHHHHHHHhhCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCChhhh
Q 005282          596 TGNVDVSVDIAQDLLRAADQYLLEGLKRLCEYSIAQIISVENIMLMYELSEAYNATTLKQSCILFILEKFDKMRNKPWFF  675 (704)
Q Consensus       596 ~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~  675 (704)
                      .+.+++..+.+..++.+|.+++++++.+.|.+.+...+++.+++.+|..+..|+...+++.|..|...|+-.+....-+.
T Consensus       133 ~dEveI~l~dv~gvlAaA~~lqldgl~qrC~evMie~lspkta~~yYea~ckYgle~vk~kc~ewl~~nl~~i~~~q~l~  212 (488)
T KOG4682|consen  133 RDEVEIKLSDVVGVLAAACLLQLDGLIQRCGEVMIETLSPKTACGYYEAACKYGLESVKKKCLEWLLNNLMTIQNVQLLK  212 (488)
T ss_pred             hhheeccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcChhhhhHhhhhhhhhhhHHHHHHHHHHHHHhhHhhhhHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999888766777


Q ss_pred             ccchhcHHHH
Q 005282          676 RLIRCVLPEI  685 (704)
Q Consensus       676 ~L~~~~~~~l  685 (704)
                      +++.+....+
T Consensus       213 ei~~~Lm~~l  222 (488)
T KOG4682|consen  213 EISINLMKQL  222 (488)
T ss_pred             hcCHHHHHHH
Confidence            7776644433

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.73  E-value=7.1e-15  Score=137.06  Aligned_cols=311  Identities=17%  Similarity=0.220  Sum_probs=257.3

Q ss_pred             HHHHHHHHHHHHHhhcC-hhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHHHHHc
Q 005282           65 RAAAKTASHALVEFAKN-EEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQIIVDT  142 (704)
Q Consensus        65 ~~~~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~~~~  142 (704)
                      .....+++.+|..+... |.    +.+..++..++.+|.....        +.++-....+.+..-| .++.+|+.+.+.
T Consensus       121 ~~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~~--------~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~  188 (461)
T KOG4199|consen  121 ESVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKVE--------SEEVTLLTLQWLQKACIMHEVNRQLFMEL  188 (461)
T ss_pred             hhHHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhcccc--------hHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence            33456666666666542 33    4578889999999988776        6689889999999999 999999999999


Q ss_pred             CCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcCh---------hhhhhhhccCCcHHHHHHhc-CCCHHHHHH
Q 005282          143 GALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENA---------NIKTRVRVEDGIPPLVELLK-FVDVKVQRA  212 (704)
Q Consensus       143 g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~---------~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~  212 (704)
                      ++++.+.+.|......       .+.+..+|++.-+..+++         .....+...|++..|++.+. .-+|.+...
T Consensus       189 ~il~Li~~~l~~~gk~-------~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~  261 (461)
T KOG4199|consen  189 KILELILQVLNREGKT-------RTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVS  261 (461)
T ss_pred             hHHHHHHHHHcccCcc-------HHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHH
Confidence            9999999888776542       688899999999875321         22446778888999999998 346899999


Q ss_pred             HHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCC-HH---HHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhc-
Q 005282          213 AAGALRTLAFKNDENKKLIVECNALPTLVLMLRSED-AS---VHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLS-  287 (704)
Q Consensus       213 a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~-~~---v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~-  287 (704)
                      ++.+|..|+. +++..+.+.+.|++..++.++.+.+ ..   ..+.+++.|..++ +++..+..+++.|+.+.++.++. 
T Consensus       262 l~~tl~~lAV-r~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralA-G~DsvKs~IV~~gg~~~ii~l~~~  339 (461)
T KOG4199|consen  262 LSTTLKALAV-RDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALA-GSDSVKSTIVEKGGLDKIITLALR  339 (461)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHh-CCCchHHHHHHhcChHHHHHHHHH
Confidence            9999999997 8899999999999999999998743 33   4468888999998 45788999999999999998873 


Q ss_pred             -CCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCC--CHHHHHHHHHHHHHhhcCCchhhhHHhhCChHH
Q 005282          288 -SSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSP--DSQLKEMSAFALGRLAQDTHNQAGIAQDGGILP  364 (704)
Q Consensus       288 -~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~  364 (704)
                       +.++.+...++.++.-++-..++....+++.|+-...+..++..  ...+++++|+++.|++..+.....++-..|++.
T Consensus       340 h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE~  419 (461)
T KOG4199|consen  340 HSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLANGIEK  419 (461)
T ss_pred             cCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhccHHH
Confidence             56788889999999999988999999999999999999999754  357899999999999988777777777888999


Q ss_pred             HHHhhcCCChhHHHHHHHHHHHcccCCchhhH
Q 005282          365 LLKLLDSKNGSLQHNAAFALYGLADNEDNVAD  396 (704)
Q Consensus       365 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~  396 (704)
                      |+..-+..++.....+-.+|+-|..+.+.++.
T Consensus       420 Li~~A~~~h~tce~~akaALRDLGc~v~lre~  451 (461)
T KOG4199|consen  420 LIRTAKANHETCEAAAKAALRDLGCDVYLREE  451 (461)
T ss_pred             HHHHHHhcCccHHHHHHHHHHhcCcchhhHHH
Confidence            99998888999999999999999877666544

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=99.73  E-value=7.7e-18  Score=173.00  Aligned_cols=162  Identities=22%  Similarity=0.386  Sum_probs=145.6

Q ss_pred             CCcccEEEEE-cCeEeehhHHHHhhcCHHHHHhhcCCCCCCCCCceEcCCCCHHHHHHHHHHHhc-Ccccc-----Chhh
Q 005282          533 PTLSDVTFVV-EGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFIYT-GNVDV-----SVDI  605 (704)
Q Consensus       533 ~~~~d~~~~~-~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~-~~~~~-----~~~~  605 (704)
                      +..-|+.|.+ +|++++|||++|++|++||..||...|.|++.-.+....++.+.+..+|+|+|+ ++..+     ..+.
T Consensus       708 ~e~~d~~i~~KDGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS~t~~~~p~~~e~m~ivLdylYs~d~~~~~k~~~~~dF  787 (1267)
T KOG0783|consen  708 EETMDTVIKLKDGKVLKAHKCFLSARLEYFSSMFQFVWMESSSITVNLSPLTVEHMSIVLDYLYSDDKVELFKDLKESDF  787 (1267)
T ss_pred             ccceeEEEEecCCcCcccceeEeeeHHHHHHHHHHHHHhhhccceeecCcchHHHHHHHHHHHHccchHHHHhccchhhh
Confidence            4556777777 678899999999999999999999999999876666667789999999999995 44432     5678


Q ss_pred             HHHHHHHHhhhChHhHHHHHHHHHHhhCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCChhhhccchhcHHHH
Q 005282          606 AQDLLRAADQYLLEGLKRLCEYSIAQIISVENIMLMYELSEAYNATTLKQSCILFILEKFDKMRNKPWFFRLIRCVLPEI  685 (704)
Q Consensus       606 ~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~L~~~~~~~l  685 (704)
                      +.+++.+||.|.+.+|++.|+..|.+.++..+|..+++||..|++..|+..|++||+.|+..+..-....+++..++..+
T Consensus       788 ~~~il~iaDqlli~~Lk~Ice~~ll~kl~lk~~~~llefaamY~ak~L~~~C~dfic~N~~~~Learsi~~~dg~~LK~l  867 (1267)
T KOG0783|consen  788 MFEILSIADQLLILELKSICEQSLLRKLNLKTLPTLLEFAAMYHAKELYSRCIDFICHNIEFFLEARSISEWDGFHLKKL  867 (1267)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHhccHhhhcchHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999998888888888899999


Q ss_pred             HHHHHHhcC
Q 005282          686 RNYFTKAFS  694 (704)
Q Consensus       686 ~~~~~~~~~  694 (704)
                      .+++++.+.
T Consensus       868 ~~~yrkm~~  876 (1267)
T KOG0783|consen  868 AQRYRKMLS  876 (1267)
T ss_pred             HHHHHHHhh
Confidence            999888764

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.72  E-value=2.3e-16  Score=164.56  Aligned_cols=366  Identities=25%  Similarity=0.289  Sum_probs=265.0

Q ss_pred             CcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccC
Q 005282          144 ALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFK  223 (704)
Q Consensus       144 ~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~  223 (704)
                      -++..+.+|.+..+        .++..|...+..+|..+...+..+.+.|+|+.|+.++.+.+.+++..|+++|.||..+
T Consensus       234 ~lpe~i~mL~~q~~--------~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~  305 (717)
T KOG1048|consen  234 TLPEVISMLMSQDP--------SVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFG  305 (717)
T ss_pred             ccHHHHHHHhccCh--------hhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcc
Confidence            35677777776665        8999999999999999999999999999999999999999999999999999999987


Q ss_pred             Cch--hhHHhHhcCChHHHHHhhcC-CCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCC-----------
Q 005282          224 NDE--NKKLIVECNALPTLVLMLRS-EDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSS-----------  289 (704)
Q Consensus       224 ~~~--~~~~~~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~-----------  289 (704)
                      ...  ++-.+.+.++++.++++|+. .|.++++.+..+|+||++. +..+..++ ...+..|..-+-.+           
T Consensus       306 ~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~-D~lK~~ii-~~al~tLt~~vI~P~Sgw~~~~~~~  383 (717)
T KOG1048|consen  306 KSTDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSN-DALKMLII-TSALSTLTDNVIIPHSGWEEEPAPR  383 (717)
T ss_pred             cCCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccch-hHHHHHHH-HHHHHHHHHhhcccccccCCCCccc
Confidence            665  88889999999999999995 7999999999999999976 44444333 34455555433211           


Q ss_pred             ---ChhHHHHHHHHHHHHhccCCcchHHHHhc-CChHHHHHhhC------CCCHHHHHHHHHHHHHhhcCCc-----h--
Q 005282          290 ---CSESKREAALLLGQFAAADSNSKVHIVQR-GAVRPLIEMLQ------SPDSQLKEMSAFALGRLAQDTH-----N--  352 (704)
Q Consensus       290 ---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-~~i~~L~~ll~------~~~~~v~~~a~~~L~~l~~~~~-----~--  352 (704)
                         +..+..++..+|.|+++...+.++.+.+. |+|+.|+..++      ..+.+..+++...|.|++..-+     .  
T Consensus       384 ~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~  463 (717)
T KOG1048|consen  384 KAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYR  463 (717)
T ss_pred             ccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhh
Confidence               24567899999999998777888878775 89999999886      2467788999999999974211     0  


Q ss_pred             -------------------------hhh----------------------HHhhCChHHHHHhh-cCCChhHHHHHHHHH
Q 005282          353 -------------------------QAG----------------------IAQDGGILPLLKLL-DSKNGSLQHNAAFAL  384 (704)
Q Consensus       353 -------------------------~~~----------------------~~~~~~~~~L~~ll-~~~~~~v~~~a~~~L  384 (704)
                                               ..+                      ++....+.+-+.++ .+.+..+.+.++++|
T Consensus       464 ~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaL  543 (717)
T KOG1048|consen  464 QVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGAL  543 (717)
T ss_pred             hHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhH
Confidence                                     000                      11112233323333 456778888899999


Q ss_pred             HHcccCCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHHHHHHHHhccCC
Q 005282          385 YGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAP  464 (704)
Q Consensus       385 ~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~  464 (704)
                      .|++...-.-...+...++.                           ....+++++.+++.+++.+...++.+|.||+.+
T Consensus       544 QNltA~~~~~~~~~~~~v~~---------------------------kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d  596 (717)
T KOG1048|consen  544 QNLTAGLWTWSEYMRGAVFR---------------------------KEKGLPPLVELLRNDDSDVVRSAAGALRNLSRD  596 (717)
T ss_pred             hhhhccCCcchhHHHhhhhh---------------------------hccCccHHHHHHhcCCchHHHHHHHHHhhhccC
Confidence            99875322221111111111                           123567899999999999999999999999999


Q ss_pred             CccceeeecCCcHHHHHHHHhhcc------hhhhhhHHHHHHHHhhhcCCCCCCCCCCCCCchhhchHHhhhcCCCcccE
Q 005282          465 DDCKTIFIDNNGLELLLGLLESTS------VKQREESSVALYKLATKATSLSPMDAAPPSPTQQVYLGEQFVNNPTLSDV  538 (704)
Q Consensus       465 ~~~~~~l~~~~~i~~L~~ll~~~~------~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d~  538 (704)
                      ..++..+- .++++.|++.+..+.      .++-..+...|.++..+..                ...+.++..+..-..
T Consensus       597 ~rnk~lig-k~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~----------------~nAkdl~~~~g~~kL  659 (717)
T KOG1048|consen  597 IRNKELIG-KYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNV----------------LNAKDLLEIKGIPKL  659 (717)
T ss_pred             chhhhhhh-cchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhH----------------HHHHHHHhccChHHH
Confidence            99998865 789999999997533      4566667777888876542                223455555554444


Q ss_pred             EEEEcCeEeehhHHHHhhcCHHHHHhhc
Q 005282          539 TFVVEGKQFYAHRICLLASSDAFRAMFD  566 (704)
Q Consensus       539 ~~~~~~~~~~~hk~iL~~~s~~f~~~f~  566 (704)
                      ..+..+   +.|-....+.|.|...|..
T Consensus       660 ~~I~~s---~~S~k~~kaAs~vL~~lW~  684 (717)
T KOG1048|consen  660 RLISKS---QHSPKEFKAASSVLDVLWQ  684 (717)
T ss_pred             HHHhcc---cCCHHHHHHHHHHHHHHHH
Confidence            444433   3333445555666666654

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.72  E-value=2.8e-16  Score=170.29  Aligned_cols=338  Identities=21%  Similarity=0.226  Sum_probs=258.3

Q ss_pred             HHHhhhcc-CCchhhHHHHHHHHHHHHHhhc-ChhHHHHHHhCCChHHHH----------hhccCCCcCCCCCCCCchHH
Q 005282           51 IDILNSKF-SSDETDRAAAKTASHALVEFAK-NEEIVSLIVDNGAVPALV----------EHLQTPPQLTNAQIPYEHEV  118 (704)
Q Consensus        51 ~~~l~~~~-~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~----------~lL~~~~~~~~~~~~~d~~v  118 (704)
                      +++|++++ ..+.++...+..|-.+|.|+.. .|+....=.+..++..|-          ..++.... ...+.++  +-
T Consensus       237 LpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~-~~apa~~--~H  313 (2195)
T KOG2122|consen  237 LPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIRAYCETCWTWLQARGP-AIAPASD--EH  313 (2195)
T ss_pred             hHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCccc--ch
Confidence            34444444 3444466788999999999976 343322222222222222          23333332 1222232  23


Q ss_pred             HH-HHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCC----CCcchhHHHHHHHHHHHHhhhcChhhhhhhhc-c
Q 005282          119 EK-ECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGG----NSRALSGVIRRAADAITNLAHENANIKTRVRV-E  192 (704)
Q Consensus       119 ~~-~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~----~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~  192 (704)
                      +. .|+.+|.+++.++++|..+.+.|+++.+-+++.-.....    ....-..+++++..+|.||.+++..++..+.. .
T Consensus       314 ~lcaA~~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~r  393 (2195)
T KOG2122|consen  314 QLCAALCTLMKLSFDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQR  393 (2195)
T ss_pred             hhHHHHHHHHHhhccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhh
Confidence            33 788899999999999999999999999999886532111    11112389999999999999888887776554 6


Q ss_pred             CCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHH-hHhcCChHHHHHh-hcCCCHHHHHHHHHHHHHHhcCChhhH
Q 005282          193 DGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKL-IVECNALPTLVLM-LRSEDASVHFEAVGVIGNLVHSSPSIK  270 (704)
Q Consensus       193 ~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~-~~~~~~i~~L~~l-L~~~~~~v~~~a~~~L~~l~~~~~~~~  270 (704)
                      |++..++..|.+...++......+|+||+...+.+-.. +.+.|-+..|+.. ++...+.....++.+||||+.+..+++
T Consensus       394 gfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNK  473 (2195)
T KOG2122|consen  394 GFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENK  473 (2195)
T ss_pred             hHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccc
Confidence            78999999999999899999999999999866655444 5577878777764 556677889999999999999998888


Q ss_pred             HHHHH-cCCHHHHHHHhcCC----ChhHHHHHHHHHHHHhc---cCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHH
Q 005282          271 KEVIL-AGALQPVIGLLSSS----CSESKREAALLLGQFAA---ADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFA  342 (704)
Q Consensus       271 ~~~~~-~~~l~~L~~ll~~~----~~~~~~~a~~~L~~l~~---~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~  342 (704)
                      ..+.. .|.+..|+.+|.-.    .-.+.+.+-.+|.|.+.   ..++.++.+.+++.+..|+..|++.+..+..++|.+
T Consensus       474 A~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGT  553 (2195)
T KOG2122|consen  474 AEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGT  553 (2195)
T ss_pred             hhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhh
Confidence            88886 68899999999643    34567778888888653   356788889999999999999999999999999999


Q ss_pred             HHHhh-cCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcccCC
Q 005282          343 LGRLA-QDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNE  391 (704)
Q Consensus       343 L~~l~-~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  391 (704)
                      ||||+ ..++.+..+++.|++..|..++++++..+.+-++.+|.||..+.
T Consensus       554 LWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R  603 (2195)
T KOG2122|consen  554 LWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR  603 (2195)
T ss_pred             hhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence            99998 56778888999999999999999999999999999999998655

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.69  E-value=3.9e-14  Score=150.94  Aligned_cols=393  Identities=19%  Similarity=0.217  Sum_probs=285.7

Q ss_pred             HHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHHHHHcCCcH
Q 005282           68 AKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQIIVDTGALP  146 (704)
Q Consensus        68 ~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~~~~g~l~  146 (704)
                      ...++.+|..+.........  ..+..+.|...|.++++          .||..+++.|+++. .+......+.+.+.++
T Consensus        55 v~~~~~iL~~~l~~~~~~~l--~~~~~~~L~~gL~h~~~----------~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~  122 (503)
T PF10508_consen   55 VELICDILKRLLSALSPDSL--LPQYQPFLQRGLTHPSP----------KVRRLALKQLGRIARHSEGAAQLLVDNELLP  122 (503)
T ss_pred             HHHHHHHHHHHHhccCHHHH--HHHHHHHHHHHhcCCCH----------HHHHHHHHHHHHHhcCCHHHHHHhcCccHHH
Confidence            45566667766653222121  45668999999998865          99999999999999 5556677888899999


Q ss_pred             HHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCch
Q 005282          147 HLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDE  226 (704)
Q Consensus       147 ~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~  226 (704)
                      .++..+.+.+.        .+...|..+|.+++... .....++..+.+..|..++..++..+|..+..++.+++..+++
T Consensus       123 ~i~~~L~~~d~--------~Va~~A~~~L~~l~~~~-~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~  193 (503)
T PF10508_consen  123 LIIQCLRDPDL--------SVAKAAIKALKKLASHP-EGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPE  193 (503)
T ss_pred             HHHHHHcCCcH--------HHHHHHHHHHHHHhCCc-hhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHH
Confidence            99999998876        99999999999999744 4445677888899999999998889999999999999988899


Q ss_pred             hhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhH-----H-HHHHHH
Q 005282          227 NKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSES-----K-REAALL  300 (704)
Q Consensus       227 ~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~-----~-~~a~~~  300 (704)
                      ....+.+.|+++.++..+.++|.-++..++.+|..++. .+...+.+.+.|+++.|..++.+...+.     . -..+..
T Consensus       194 ~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f  272 (503)
T PF10508_consen  194 AAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKF  272 (503)
T ss_pred             HHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHH
Confidence            99999999999999999999999999999999999998 5777888999999999999996543222     2 222356


Q ss_pred             HHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhH-HhhC-ChHHHH----HhhcCCCh
Q 005282          301 LGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGI-AQDG-GILPLL----KLLDSKNG  374 (704)
Q Consensus       301 L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~-~~~~-~~~~L~----~ll~~~~~  374 (704)
                      .++++...+..... .-..++..+..++.+.|+..+..|..+++.++...+++..+ ...+ .+..++    ....++..
T Consensus       273 ~g~la~~~~~~v~~-~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~  351 (503)
T PF10508_consen  273 FGNLARVSPQEVLE-LYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGST  351 (503)
T ss_pred             HHHHHhcChHHHHH-HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCch
Confidence            66776543322211 11245667777788899999999999999999988888777 4333 334433    34456778


Q ss_pred             hHHHHHHHHHHHccc--CCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhH-HHHHHHhhccHHHH
Q 005282          375 SLQHNAAFALYGLAD--NEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLN-HLLYLLRVADRAVK  451 (704)
Q Consensus       375 ~v~~~a~~~L~~l~~--~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~L~~ll~~~~~~v~  451 (704)
                      +++..+..+|.++-.  .+.....+..                       ....+-....+.... .++.+++.+-+++|
T Consensus       352 ~lk~r~l~al~~il~~~~~~~~~~i~~-----------------------~~~~w~~~~~~~~~~~~l~~~~~qPF~elr  408 (503)
T PF10508_consen  352 ELKLRALHALASILTSGTDRQDNDILS-----------------------ITESWYESLSGSPLSNLLMSLLKQPFPELR  408 (503)
T ss_pred             HHHHHHHHHHHHHHhcCCCCchHHHHH-----------------------HHHHHHHHhcCCchHHHHHHHhcCCchHHH
Confidence            899999999999953  2222222221                       111111111222233 67788888889999


Q ss_pred             HHHHHHHHhccCCCccceeeecC-CcHHHHHHHHhhcchhhhhhHHHHHHHHhhhc
Q 005282          452 RRVTLALAHLCAPDDCKTIFIDN-NGLELLLGLLESTSVKQREESSVALYKLATKA  506 (704)
Q Consensus       452 ~~a~~~L~~l~~~~~~~~~l~~~-~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~  506 (704)
                      .++...|..++..+-+...+... |-++.|+.--...+.+.+..=-.++..|+..+
T Consensus       409 ~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~~~~  464 (503)
T PF10508_consen  409 CAAYRLLQALAAQPWGQREICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALAKSS  464 (503)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHHhcc
Confidence            99999999998766555445544 44444444433455555555555555666544

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.68  E-value=8.8e-15  Score=140.84  Aligned_cols=354  Identities=16%  Similarity=0.096  Sum_probs=265.9

Q ss_pred             HHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcH
Q 005282          117 EVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIP  196 (704)
Q Consensus       117 ~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~  196 (704)
                      .++..+..+++..+.++.-|..+....+...++..|+....++    +.++..+++++|+|+|.++.+.|..+...||-+
T Consensus        57 tv~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~----d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaq  132 (604)
T KOG4500|consen   57 TVYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSP----DTEVHEQCFRALGNICYDNNENRAAFFNLGGAQ  132 (604)
T ss_pred             hhhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCC----cccHHHHHHHHHhhhhccCchhHHHHHhcCCce
Confidence            5788888999999988777777766655455555555443332    138999999999999999999999999999988


Q ss_pred             HHHHHhcC----C---CHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhc--CCCHHHHHHHHHHHHHHhcCC-
Q 005282          197 PLVELLKF----V---DVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLR--SEDASVHFEAVGVIGNLVHSS-  266 (704)
Q Consensus       197 ~L~~ll~~----~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~--~~~~~v~~~a~~~L~~l~~~~-  266 (704)
                      .+++.|+.    +   +.+....+.+.|.|...++.+.+.+.++.|+++.|...+.  -.+....+..+-...|+.+-- 
T Consensus       133 ivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~  212 (604)
T KOG4500|consen  133 IVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVC  212 (604)
T ss_pred             ehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHH
Confidence            88877772    2   2467778889999999899999999999999999988765  456666666666555554321 


Q ss_pred             hhhHHHHHHcCCHHHHHHHhcCC-ChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCC-CC-------HHHHH
Q 005282          267 PSIKKEVILAGALQPVIGLLSSS-CSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQS-PD-------SQLKE  337 (704)
Q Consensus       267 ~~~~~~~~~~~~l~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~-------~~v~~  337 (704)
                      +.......+....-.+++++.+. ++++.+.+...+...+. ++..+..+.+.|.++.++.+++. ++       -..-.
T Consensus       213 e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~ae-nd~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k  291 (604)
T KOG4500|consen  213 EMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAE-NDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFK  291 (604)
T ss_pred             HhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhc-CcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHH
Confidence            11222233455566677777543 45667777777777764 66777788999999999999865 22       23344


Q ss_pred             HHHHHHHHhhcCCchhhhHHhhC-ChHHHHHhhcCCChhHHHHHHHHHHHcccCCchhhHHHhhCCcccccccccccccc
Q 005282          338 MSAFALGRLAQDTHNQAGIAQDG-GILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPT  416 (704)
Q Consensus       338 ~a~~~L~~l~~~~~~~~~~~~~~-~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~~  416 (704)
                      .++....-+..+++.-.++...+ .++.+...+.+.+.+.+..+.-+++|+++...++.++++.|.+..|.+        
T Consensus       292 ~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~--------  363 (604)
T KOG4500|consen  292 RIAELDVLLLTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLIS--------  363 (604)
T ss_pred             hhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHH--------
Confidence            56666666667777777777766 677889999999999999999999999999999999999777655432        


Q ss_pred             hHHHHHHHHHHHHHhhcchhHHHHH-HHhhccHHHHHHHHHHHHhccCCCccceeeecCCcHHHHHHHHhhcchhhhhhH
Q 005282          417 KDCVARTLKRLEEKVHGRVLNHLLY-LLRVADRAVKRRVTLALAHLCAPDDCKTIFIDNNGLELLLGLLESTSVKQREES  495 (704)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~L~~-ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a  495 (704)
                                           .|.+ --..++.+++.+++.+|.|+.-+..++..+...|..+.++.++....|+++..-
T Consensus       364 ---------------------~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~~aGvteaIL~~lk~~~ppv~fkl  422 (604)
T KOG4500|consen  364 ---------------------CLMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFAPAGVTEAILLQLKLASPPVTFKL  422 (604)
T ss_pred             ---------------------HHHHhcCCCccchhHHHHHHHHHhccccCCchhhccccchHHHHHHHHHhcCCcchHHH
Confidence                                 1111 112467889999999999999999999999999999999999998888887776


Q ss_pred             HHHHHHHhh
Q 005282          496 SVALYKLAT  504 (704)
Q Consensus       496 ~~~L~~L~~  504 (704)
                      ...+..+.-
T Consensus       423 lgTlrM~~d  431 (604)
T KOG4500|consen  423 LGTLRMIRD  431 (604)
T ss_pred             HHHHHHHHh
Confidence            666655443

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.68  E-value=3.5e-14  Score=151.31  Aligned_cols=362  Identities=20%  Similarity=0.203  Sum_probs=282.0

Q ss_pred             HHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHH
Q 005282           96 ALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAI  175 (704)
Q Consensus        96 ~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L  175 (704)
                      .+...|...+.          +....++.+|..+.........  ..+..+.|...|.++++        .++..+++.+
T Consensus        42 ~lf~~L~~~~~----------e~v~~~~~iL~~~l~~~~~~~l--~~~~~~~L~~gL~h~~~--------~Vr~l~l~~l  101 (503)
T PF10508_consen   42 VLFDCLNTSNR----------EQVELICDILKRLLSALSPDSL--LPQYQPFLQRGLTHPSP--------KVRRLALKQL  101 (503)
T ss_pred             HHHHHHhhcCh----------HHHHHHHHHHHHHHhccCHHHH--HHHHHHHHHHHhcCCCH--------HHHHHHHHHH
Confidence            37777887654          6677888999998854444333  45667888888888776        9999999999


Q ss_pred             HHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHH
Q 005282          176 TNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEA  255 (704)
Q Consensus       176 ~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a  255 (704)
                      .++..++......+...+.++.++.++.+++..+...|+.+|..++. .+...+.+...+.+..|..++..+++.+|..+
T Consensus       102 ~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~-~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv  180 (503)
T PF10508_consen  102 GRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLAS-HPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRV  180 (503)
T ss_pred             HHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhC-CchhHHHHhCcchHHHHHHHHhccCHHHHHHH
Confidence            99998777777888889999999999999999999999999999996 56666678788889999999988899999999


Q ss_pred             HHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCC--CH
Q 005282          256 VGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSP--DS  333 (704)
Q Consensus       256 ~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~  333 (704)
                      ..++.+++..+++....+...|+++.++..+.++|.-++..++..|..++. .+.....+.+.|+++.|..++.+.  ++
T Consensus       181 ~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp  259 (503)
T PF10508_consen  181 YELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDP  259 (503)
T ss_pred             HHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCC
Confidence            999999999989999999999999999999999888889999999999997 778888899999999999999643  22


Q ss_pred             ---H-HHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcccCCchhhHH-HhhCC-ccccc
Q 005282          334 ---Q-LKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADL-VRVGG-VQKLQ  407 (704)
Q Consensus       334 ---~-v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l-~~~g~-i~~l~  407 (704)
                         . .........++++...+....-.-...+..+.+++.+.++..+..|..+++.++++.+.+..+ ...|. ++   
T Consensus       260 ~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~---  336 (503)
T PF10508_consen  260 RLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMK---  336 (503)
T ss_pred             cccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHH---
Confidence               1 223344677777775333322222344556677888999999999999999999988888877 33221 11   


Q ss_pred             ccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHHHHHHHHhccCCCcc----------ceee--ecCC
Q 005282          408 DGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPDDC----------KTIF--IDNN  475 (704)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~----------~~~l--~~~~  475 (704)
                                                .++..+.....++..+++..+..++.++-.....          +..+  ...+
T Consensus       337 --------------------------~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~  390 (503)
T PF10508_consen  337 --------------------------HVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSGS  390 (503)
T ss_pred             --------------------------HHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCC
Confidence                                      1344555666777788999999999888221111          1111  1122


Q ss_pred             cHH-HHHHHHhhcchhhhhhHHHHHHHHhhhcCC
Q 005282          476 GLE-LLLGLLESTSVKQREESSVALYKLATKATS  508 (704)
Q Consensus       476 ~i~-~L~~ll~~~~~~~~~~a~~~L~~L~~~~~~  508 (704)
                      -.. .+..+++.+.|++|.++...|..|+.+++.
T Consensus       391 ~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg  424 (503)
T PF10508_consen  391 PLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWG  424 (503)
T ss_pred             chHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHH
Confidence            333 677778788899999999999999998754

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac

Probab=99.62  E-value=1.6e-15  Score=122.74  Aligned_cols=90  Identities=38%  Similarity=0.693  Sum_probs=85.7

Q ss_pred             cEEEEEcCeEeehhHHHHhhcCHHHHHhhcCCCCCCCCCceEcCCCCHHHHHHHHHHHhcCccccChhhHHHHHHHHhhh
Q 005282          537 DVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFIYTGNVDVSVDIAQDLLRAADQY  616 (704)
Q Consensus       537 d~~~~~~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~~~~ll~~A~~~  616 (704)
                      |+++.++|+.|++||.+|+++|+||+.||.+++.+.....+.+++.+++.|+.+++|+|++.+.++.+++.+++.+|++|
T Consensus         1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~~~~~~~f~~~l~~ly~~~~~~~~~~~~~l~~~a~~~   80 (90)
T smart00225        1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLDDVSPEDFRALLEFLYTGKLDLPEENVEELLELADYL   80 (90)
T ss_pred             CeEEEECCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEecCCCHHHHHHHHHeecCceeecCHHHHHHHHHHHHHH
Confidence            68899999999999999999999999999999888778899999999999999999999999999999999999999999


Q ss_pred             ChHhHHHHHH
Q 005282          617 LLEGLKRLCE  626 (704)
Q Consensus       617 ~~~~l~~~c~  626 (704)
                      +++.+.+.|+
T Consensus        81 ~~~~l~~~c~   90 (90)
T smart00225       81 QIPGLVELCE   90 (90)
T ss_pred             CcHHHHhhhC
Confidence            9999999884

Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.

>PRK09687 putative lyase; Provisional

Probab=99.54  E-value=7.5e-13  Score=129.23  Aligned_cols=254  Identities=19%  Similarity=0.165  Sum_probs=197.8

Q ss_pred             CcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccC
Q 005282          144 ALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFK  223 (704)
Q Consensus       144 ~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~  223 (704)
                      -++.|..+|.+.+.        .++..++++|..+-.           ...++.+..++.++++.+|..++++|+.+.. 
T Consensus        24 ~~~~L~~~L~d~d~--------~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~-   83 (280)
T PRK09687         24 NDDELFRLLDDHNS--------LKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGM-   83 (280)
T ss_pred             cHHHHHHHHhCCCH--------HHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-
Confidence            56788899987765        899999999988752           2346778889999999999999999999974 


Q ss_pred             CchhhHHhHhcCChHHHHHh-hcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHH
Q 005282          224 NDENKKLIVECNALPTLVLM-LRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLG  302 (704)
Q Consensus       224 ~~~~~~~~~~~~~i~~L~~l-L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~  302 (704)
                      .+..     ....++.|..+ ++++++.|+..++.+|+++.......     ...++..+...+.++++.++..++.+|+
T Consensus        84 ~~~~-----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~~D~~~~VR~~a~~aLg  153 (280)
T PRK09687         84 AKRC-----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITAFDKSTNVRFAVAFALS  153 (280)
T ss_pred             Cccc-----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHhhCCCHHHHHHHHHHHh
Confidence            2211     12346777766 67889999999999999996432111     1224566777788889999999999998


Q ss_pred             HHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHH
Q 005282          303 QFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAF  382 (704)
Q Consensus       303 ~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~  382 (704)
                      .+..           ...++.|+.++.++++.++..|+.+|+.+....+        ..++.|+.++.+.++.|+..|+.
T Consensus       154 ~~~~-----------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~--------~~~~~L~~~L~D~~~~VR~~A~~  214 (280)
T PRK09687        154 VIND-----------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP--------DIREAFVAMLQDKNEEIRIEAII  214 (280)
T ss_pred             ccCC-----------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH--------HHHHHHHHHhcCCChHHHHHHHH
Confidence            7631           2368999999999999999999999999833222        35577999999999999999999


Q ss_pred             HHHHcccCCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHHHHHHHHhcc
Q 005282          383 ALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLC  462 (704)
Q Consensus       383 ~L~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~  462 (704)
                      +|+.+-. +                                          ..++.|+..+..++  ++..++.+|+.+.
T Consensus       215 aLg~~~~-~------------------------------------------~av~~Li~~L~~~~--~~~~a~~ALg~ig  249 (280)
T PRK09687        215 GLALRKD-K------------------------------------------RVLSVLIKELKKGT--VGDLIIEAAGELG  249 (280)
T ss_pred             HHHccCC-h------------------------------------------hHHHHHHHHHcCCc--hHHHHHHHHHhcC
Confidence            9998732 1                                          24667777877765  6778999999993


Q ss_pred             CCCccceeeecCCcHHHHHHHHh-hcchhhhhhHHHHHHH
Q 005282          463 APDDCKTIFIDNNGLELLLGLLE-STSVKQREESSVALYK  501 (704)
Q Consensus       463 ~~~~~~~~l~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~  501 (704)
                      .          ..+++.|.+++. +.++.++..|.++|..
T Consensus       250 ~----------~~a~p~L~~l~~~~~d~~v~~~a~~a~~~  279 (280)
T PRK09687        250 D----------KTLLPVLDTLLYKFDDNEIITKAIDKLKR  279 (280)
T ss_pred             C----------HhHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence            3          357999999997 7899999999888754

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.51  E-value=5.5e-12  Score=144.59  Aligned_cols=278  Identities=23%  Similarity=0.215  Sum_probs=217.4

Q ss_pred             hCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHH
Q 005282           90 DNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIR  169 (704)
Q Consensus        90 ~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~  169 (704)
                      +...++.|++.|+++++          .||..|+..|+.+..          .+.++.|...|++.+.        .++.
T Consensus       619 ~~~~~~~L~~~L~D~d~----------~VR~~Av~~L~~~~~----------~~~~~~L~~aL~D~d~--------~VR~  670 (897)
T PRK13800        619 DAPSVAELAPYLADPDP----------GVRRTAVAVLTETTP----------PGFGPALVAALGDGAA--------AVRR  670 (897)
T ss_pred             cchhHHHHHHHhcCCCH----------HHHHHHHHHHhhhcc----------hhHHHHHHHHHcCCCH--------HHHH
Confidence            44567899999988765          999999999998762          3467888999977665        8999


Q ss_pred             HHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCH
Q 005282          170 RAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDA  249 (704)
Q Consensus       170 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~  249 (704)
                      .|+.+|..+....+          ..+.|...|.++++.++..++.+|..+..+            -...++..|.++++
T Consensus       671 ~Aa~aL~~l~~~~~----------~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~------------~~~~l~~~L~D~d~  728 (897)
T PRK13800        671 AAAEGLRELVEVLP----------PAPALRDHLGSPDPVVRAAALDVLRALRAG------------DAALFAAALGDPDH  728 (897)
T ss_pred             HHHHHHHHHHhccC----------chHHHHHHhcCCCHHHHHHHHHHHHhhccC------------CHHHHHHHhcCCCH
Confidence            99999988753211          135678888899999999999999887531            13457788899999


Q ss_pred             HHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhC
Q 005282          250 SVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQ  329 (704)
Q Consensus       250 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~  329 (704)
                      .+|..|+.+|+.+-.              .+.|..++.++++.++..++.+|..+....         ...++.|..+++
T Consensus       729 ~VR~~Av~aL~~~~~--------------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~---------~~~~~~L~~ll~  785 (897)
T PRK13800        729 RVRIEAVRALVSVDD--------------VESVAGAATDENREVRIAVAKGLATLGAGG---------APAGDAVRALTG  785 (897)
T ss_pred             HHHHHHHHHHhcccC--------------cHHHHHHhcCCCHHHHHHHHHHHHHhcccc---------chhHHHHHHHhc
Confidence            999999999987621              234667889999999999999999885321         123788889999


Q ss_pred             CCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcccCCchhhHHHhhCCccccccc
Q 005282          330 SPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDG  409 (704)
Q Consensus       330 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~g~i~~l~~~  409 (704)
                      ++++.+|..|+.+|+++.....         .+..++..+.+.++.||..|+.+|..+...                   
T Consensus       786 D~d~~VR~aA~~aLg~~g~~~~---------~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~-------------------  837 (897)
T PRK13800        786 DPDPLVRAAALAALAELGCPPD---------DVAAATAALRASAWQVRQGAARALAGAAAD-------------------  837 (897)
T ss_pred             CCCHHHHHHHHHHHHhcCCcch---------hHHHHHHHhcCCChHHHHHHHHHHHhcccc-------------------
Confidence            9999999999999988854321         224578888889999999999999877321                   


Q ss_pred             ccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHHHHHHHHhccCCCccceeeecCCcHHHHHHHHhhcch
Q 005282          410 EFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPDDCKTIFIDNNGLELLLGLLESTSV  489 (704)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~  489 (704)
                                              ..++.|+.++.++++.|+..|+++|+.+.         ......+.|...+.+.++
T Consensus       838 ------------------------~a~~~L~~~L~D~~~~VR~~A~~aL~~~~---------~~~~a~~~L~~al~D~d~  884 (897)
T PRK13800        838 ------------------------VAVPALVEALTDPHLDVRKAAVLALTRWP---------GDPAARDALTTALTDSDA  884 (897)
T ss_pred             ------------------------chHHHHHHHhcCCCHHHHHHHHHHHhccC---------CCHHHHHHHHHHHhCCCH
Confidence                                    13456888999999999999999999971         123467889999999999


Q ss_pred             hhhhhHHHHHHH
Q 005282          490 KQREESSVALYK  501 (704)
Q Consensus       490 ~~~~~a~~~L~~  501 (704)
                      +||..|+.+|..
T Consensus       885 ~Vr~~A~~aL~~  896 (897)
T PRK13800        885 DVRAYARRALAH  896 (897)
T ss_pred             HHHHHHHHHHhh
Confidence            999999998863

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.50  E-value=1.7e-12  Score=123.50  Aligned_cols=226  Identities=22%  Similarity=0.322  Sum_probs=177.4

Q ss_pred             HhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHH
Q 005282           89 VDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVI  168 (704)
Q Consensus        89 ~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~  168 (704)
                      .+.+-++.|+.+|+...         |+.+++.|..++++.+..+.+++.+.+.|+++.+..+|.+++.        .++
T Consensus         9 l~~~~l~~Ll~lL~~t~---------dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~--------~vr   71 (254)
T PF04826_consen    9 LEAQELQKLLCLLESTE---------DPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNP--------SVR   71 (254)
T ss_pred             cCHHHHHHHHHHHhcCC---------ChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCCh--------HHH
Confidence            46677899999999875         4699999999999999999999999999999999999999876        999


Q ss_pred             HHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcC--CCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcC
Q 005282          169 RRAADAITNLAHENANIKTRVRVEDGIPPLVELLKF--VDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRS  246 (704)
Q Consensus       169 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~  246 (704)
                      ..|+++|.|++. +.+.+..+-  ..++.+++...+  -+..++..++++|.+++. .++.+..+..  .++.++.+|.+
T Consensus        72 ~~AL~aL~Nls~-~~en~~~Ik--~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv-~~~~~~~l~~--~i~~ll~LL~~  145 (254)
T PF04826_consen   72 EKALNALNNLSV-NDENQEQIK--MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTV-TNDYHHMLAN--YIPDLLSLLSS  145 (254)
T ss_pred             HHHHHHHHhcCC-ChhhHHHHH--HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCC-CcchhhhHHh--hHHHHHHHHHc
Confidence            999999999996 444555443  346666665443  367899999999999986 5566666644  69999999999


Q ss_pred             CCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCC-ChhHHHHHHHHHHHHhccCCcchHH-----------
Q 005282          247 EDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSS-CSESKREAALLLGQFAAADSNSKVH-----------  314 (704)
Q Consensus       247 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~-----------  314 (704)
                      ++..++..++++|.||+.+ +.....++..+++..++.++... +.++...++..+.|+..+-+.....           
T Consensus       146 G~~~~k~~vLk~L~nLS~n-p~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L  224 (254)
T PF04826_consen  146 GSEKTKVQVLKVLVNLSEN-PDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSL  224 (254)
T ss_pred             CChHHHHHHHHHHHHhccC-HHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhH
Confidence            9999999999999999966 77788888889999999999765 5677889999999986433222111           


Q ss_pred             ---HHhcC-ChHHHHHhhCCCCHHHHHH
Q 005282          315 ---IVQRG-AVRPLIEMLQSPDSQLKEM  338 (704)
Q Consensus       315 ---~~~~~-~i~~L~~ll~~~~~~v~~~  338 (704)
                         +.+.+ ..+.|..+..++|++|+..
T Consensus       225 ~~~~~e~~~~~~~l~~l~~h~d~ev~~~  252 (254)
T PF04826_consen  225 FSLFGESSQLAKKLQALANHPDPEVKEQ  252 (254)
T ss_pred             HHHHccHHHHHHHHHHHHcCCCHHHhhh
Confidence               11111 3455555556666666654

>PRK09687 putative lyase; Provisional

Probab=99.48  E-value=3.7e-12  Score=124.35  Aligned_cols=255  Identities=16%  Similarity=0.091  Sum_probs=196.5

Q ss_pred             CChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHH
Q 005282           92 GAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRA  171 (704)
Q Consensus        92 g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a  171 (704)
                      --++.|..+|.+.+.          .+|..|+++|..+..          ..+++.+..++.+.+.        .++..+
T Consensus        23 ~~~~~L~~~L~d~d~----------~vR~~A~~aL~~~~~----------~~~~~~l~~ll~~~d~--------~vR~~A   74 (280)
T PRK09687         23 LNDDELFRLLDDHNS----------LKRISSIRVLQLRGG----------QDVFRLAIELCSSKNP--------IERDIG   74 (280)
T ss_pred             ccHHHHHHHHhCCCH----------HHHHHHHHHHHhcCc----------chHHHHHHHHHhCCCH--------HHHHHH
Confidence            457889999988866          999999999998873          2345677787776654        999999


Q ss_pred             HHHHHHhhhcChhhhhhhhccCCcHHHHHH-hcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHH
Q 005282          172 ADAITNLAHENANIKTRVRVEDGIPPLVEL-LKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDAS  250 (704)
Q Consensus       172 ~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l-l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~  250 (704)
                      +++|+.+-.....      ....++.|..+ ++++++.|+..|+.+|++++......     ....+..+...+.++++.
T Consensus        75 ~~aLg~lg~~~~~------~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~~D~~~~  143 (280)
T PRK09687         75 ADILSQLGMAKRC------QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITAFDKSTN  143 (280)
T ss_pred             HHHHHhcCCCccc------hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHhhCCCHH
Confidence            9999998642211      12356777777 67889999999999999997422111     112355677778889999


Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCC
Q 005282          251 VHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQS  330 (704)
Q Consensus       251 v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~  330 (704)
                      ||..++++|+.+..           ...++.|+.++.++++.++..|+.+|+.+...+         ..+++.|+..+.+
T Consensus       144 VR~~a~~aLg~~~~-----------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~---------~~~~~~L~~~L~D  203 (280)
T PRK09687        144 VRFAVAFALSVIND-----------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDN---------PDIREAFVAMLQD  203 (280)
T ss_pred             HHHHHHHHHhccCC-----------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCC---------HHHHHHHHHHhcC
Confidence            99999999987741           135889999999999999999999999983212         2367889999999


Q ss_pred             CCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcccCCchhhHHHhhCCcccccccc
Q 005282          331 PDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGE  410 (704)
Q Consensus       331 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~g~i~~l~~~~  410 (704)
                      .+..++..|.++|+.+..          ...++.|++.+.+++  ++..++.+|+++...                    
T Consensus       204 ~~~~VR~~A~~aLg~~~~----------~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~--------------------  251 (280)
T PRK09687        204 KNEEIRIEAIIGLALRKD----------KRVLSVLIKELKKGT--VGDLIIEAAGELGDK--------------------  251 (280)
T ss_pred             CChHHHHHHHHHHHccCC----------hhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH--------------------
Confidence            999999999999988543          247789999998765  678888999988431                    


Q ss_pred             cccccchHHHHHHHHHHHHHhhcchhHHHHHHHh-hccHHHHHHHHHHHHh
Q 005282          411 FTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLR-VADRAVKRRVTLALAH  460 (704)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~-~~~~~v~~~a~~~L~~  460 (704)
                                             ..++.|..++. ++|+.++..+.++|..
T Consensus       252 -----------------------~a~p~L~~l~~~~~d~~v~~~a~~a~~~  279 (280)
T PRK09687        252 -----------------------TLLPVLDTLLYKFDDNEIITKAIDKLKR  279 (280)
T ss_pred             -----------------------hHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence                                   14567778885 7899999999888754

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.46  E-value=3.5e-11  Score=117.89  Aligned_cols=402  Identities=15%  Similarity=0.145  Sum_probs=291.0

Q ss_pred             hhHHHHHHHHHHHHhhhccCCchhhHHHHHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHH
Q 005282           40 QQDLVQDIRAQIDILNSKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVE  119 (704)
Q Consensus        40 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~  119 (704)
                      ++.+...+..+-..+..+...  +. ...+.|+..|.|++.+-..-..+...+++..|+..|+..+.          ++.
T Consensus       255 netLk~e~dr~~kklk~~~~K--Qe-qLLrva~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~----------~Ll  321 (791)
T KOG1222|consen  255 NETLKEEIDRLNKKLKTAIRK--QE-QLLRVAVYLLLNLAEDISVELKMRRKNIVAMLVKALDRSNS----------SLL  321 (791)
T ss_pred             hhhHHHHHHHHHHHHHHHHHH--HH-HHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcccch----------HHH
Confidence            444445555555555444321  22 24567888999999987666778888999999999999987          899


Q ss_pred             HHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHH
Q 005282          120 KECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLV  199 (704)
Q Consensus       120 ~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~  199 (704)
                      ......|-+|+-..+++..+.+.|.+..|++++...++        +++...+..+.|++. +...+..++..|.+|.+.
T Consensus       322 ~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~h~--------dL~~~tl~LlfNlSF-D~glr~KMv~~GllP~l~  392 (791)
T KOG1222|consen  322 TLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQHP--------DLRKATLMLLFNLSF-DSGLRPKMVNGGLLPHLA  392 (791)
T ss_pred             HHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCCCH--------HHHHHHHHHhhhccc-cccccHHHhhccchHHHH
Confidence            99999999999767888899999999999999988876        999999999999997 456788899999999999


Q ss_pred             HHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcC-CCHHHHHHHHHHHHHHhcCChhhHHHHHHcCC
Q 005282          200 ELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRS-EDASVHFEAVGVIGNLVHSSPSIKKEVILAGA  278 (704)
Q Consensus       200 ~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~  278 (704)
                      .++.+++.  ...|+..++.++. ++..+..+.....++.+++.+-+ .+.+|-...+..--|++.+ ....+.+..-.+
T Consensus       393 ~ll~~d~~--~~iA~~~lYh~S~-dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~ln-kRNaQlvceGqg  468 (791)
T KOG1222|consen  393 SLLDSDTK--HGIALNMLYHLSC-DDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLN-KRNAQLVCEGQG  468 (791)
T ss_pred             HHhCCccc--chhhhhhhhhhcc-CcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhc-cccceEEecCcc
Confidence            99987653  3347778888886 78888888888899999986654 4555555555555677755 445555666667


Q ss_pred             HHHHHHHh-cCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCC-CHHHHHHHHHHHHHhhcCCchhhhH
Q 005282          279 LQPVIGLL-SSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSP-DSQLKEMSAFALGRLAQDTHNQAGI  356 (704)
Q Consensus       279 l~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~  356 (704)
                      +..|++.. ...+.-    ....+.|++.++...+..+++  .+..|...++.. +......+..+|+|+....-.-..+
T Consensus       469 L~~LM~ra~k~~D~l----LmK~vRniSqHeg~tqn~Fid--yvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~i  542 (791)
T KOG1222|consen  469 LDLLMERAIKSRDLL----LMKVVRNISQHEGATQNMFID--YVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKI  542 (791)
T ss_pred             hHHHHHHHhcccchH----HHHHHHHhhhccchHHHHHHH--HHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHH
Confidence            88888554 343332    345677887766555555554  366677777654 4456667888999988766555555


Q ss_pred             Hhh-CChHHHHHhhcCC--ChhHHHHHHHHHHHcccCCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhc
Q 005282          357 AQD-GGILPLLKLLDSK--NGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHG  433 (704)
Q Consensus       357 ~~~-~~~~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (704)
                      .+. ..+|.+-+.|..+  ..+++-..+-+++.++.+..+...+..+|.++.+                           
T Consensus       543 lq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~a~~i~tl---------------------------  595 (791)
T KOG1222|consen  543 LQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAPAKLIDTL---------------------------  595 (791)
T ss_pred             HhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCccccHHHH---------------------------
Confidence            554 7778787777553  4457777788888888888888888877776554                           


Q ss_pred             chhHHHHHHHhh--ccHHHHHHHHHHHHhccCCCccceeeecC-CcHHHHHHHHhhcchhhhhhHHHHHHHHhhhc
Q 005282          434 RVLNHLLYLLRV--ADRAVKRRVTLALAHLCAPDDCKTIFIDN-NGLELLLGLLESTSVKQREESSVALYKLATKA  506 (704)
Q Consensus       434 ~~~~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~l~~~-~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~  506 (704)
                            +.++..  .+.+.......+...+-.++..+..+.+. ..-..|+.++.+.+..+|+.+-.+|--++.+.
T Consensus       596 ------ieLL~a~QeDDEfV~QiiyVF~Q~l~He~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~d  665 (791)
T KOG1222|consen  596 ------IELLQACQEDDEFVVQIIYVFLQFLKHELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEHD  665 (791)
T ss_pred             ------HHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHhh
Confidence                  444433  34455555555555554445445444444 44456899999999999999999998887765

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.44  E-value=3.7e-11  Score=117.70  Aligned_cols=355  Identities=17%  Similarity=0.188  Sum_probs=265.3

Q ss_pred             HHHHHHHhhhccCCchhhHHHHHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHH
Q 005282           47 IRAQIDILNSKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFAL  126 (704)
Q Consensus        47 ~~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L  126 (704)
                      -..++.+|+..+..++.+.  ..-...-|..++--.++...+.+.|+++.|+.+....++          +++...+..+
T Consensus       302 rkniV~mLVKaLdr~n~~L--l~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~h~----------dL~~~tl~Ll  369 (791)
T KOG1222|consen  302 RKNIVAMLVKALDRSNSSL--LTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQHP----------DLRKATLMLL  369 (791)
T ss_pred             HHhHHHHHHHHHcccchHH--HHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCCCH----------HHHHHHHHHh
Confidence            4456777777776554333  344455666666666777888899999999999999976          9999999999


Q ss_pred             HhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhc-CC
Q 005282          127 GLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLK-FV  205 (704)
Q Consensus       127 ~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~  205 (704)
                      .|++-+...|..++..|.+|.+..++.+...          ...|+..|..++- ++..+..+...++++.+++.+- ..
T Consensus       370 fNlSFD~glr~KMv~~GllP~l~~ll~~d~~----------~~iA~~~lYh~S~-dD~~K~MfayTdci~~lmk~v~~~~  438 (791)
T KOG1222|consen  370 FNLSFDSGLRPKMVNGGLLPHLASLLDSDTK----------HGIALNMLYHLSC-DDDAKAMFAYTDCIKLLMKDVLSGT  438 (791)
T ss_pred             hhccccccccHHHhhccchHHHHHHhCCccc----------chhhhhhhhhhcc-CcHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999888999999999999999999987654          2357778888875 6778888999999999987655 45


Q ss_pred             CHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHh-hcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHH
Q 005282          206 DVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLM-LRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIG  284 (704)
Q Consensus       206 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l-L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~  284 (704)
                      +.++-...+....|+|. +..+.+.+++..++..|++. +++.++-.    ...+.|++++.......+++  .+.-|..
T Consensus       439 ~~~vdl~lia~ciNl~l-nkRNaQlvceGqgL~~LM~ra~k~~D~lL----mK~vRniSqHeg~tqn~Fid--yvgdLa~  511 (791)
T KOG1222|consen  439 GSEVDLALIALCINLCL-NKRNAQLVCEGQGLDLLMERAIKSRDLLL----MKVVRNISQHEGATQNMFID--YVGDLAG  511 (791)
T ss_pred             CceecHHHHHHHHHHHh-ccccceEEecCcchHHHHHHHhcccchHH----HHHHHHhhhccchHHHHHHH--HHHHHHH
Confidence            56666667777788886 77888888888899998875 44444432    45678888775444444443  3555666


Q ss_pred             HhcCCCh-hHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCC--CHHHHHHHHHHHHHhhcCCchhhhHHhhCC
Q 005282          285 LLSSSCS-ESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSP--DSQLKEMSAFALGRLAQDTHNQAGIAQDGG  361 (704)
Q Consensus       285 ll~~~~~-~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~  361 (704)
                      .+...+. +...+|..+++|+...+-+-...+-..+++|.+-..|+.+  ..+++-...-+++.++........+...+.
T Consensus       512 i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~a~~  591 (791)
T KOG1222|consen  512 IAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAPAKL  591 (791)
T ss_pred             HhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCcccc
Confidence            6655444 4577899999999876666666666779999999998753  445666777788888887777777788899


Q ss_pred             hHHHHHhhcC--CChhHHHHHHHHHHHcccCCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHH
Q 005282          362 ILPLLKLLDS--KNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHL  439 (704)
Q Consensus       362 ~~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  439 (704)
                      ++.++++|+.  .+.+...........+..++..++.+.++-...                                ..+
T Consensus       592 i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~tr~~miket~~~--------------------------------Ayl  639 (791)
T KOG1222|consen  592 IDTLIELLQACQEDDEFVVQIIYVFLQFLKHELTRRLMIKETALG--------------------------------AYL  639 (791)
T ss_pred             HHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhccch--------------------------------HHH
Confidence            9999999976  355666666666666666666667776643322                                268


Q ss_pred             HHHHhhccHHHHHHHHHHHHhccC
Q 005282          440 LYLLRVADRAVKRRVTLALAHLCA  463 (704)
Q Consensus       440 ~~ll~~~~~~v~~~a~~~L~~l~~  463 (704)
                      +.++++.+.+++..|=.+|--++.
T Consensus       640 IDLMHDkN~eiRkVCDn~LdIiae  663 (791)
T KOG1222|consen  640 IDLMHDKNAEIRKVCDNALDIIAE  663 (791)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHHH
Confidence            899999999999988887776644

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.42  E-value=4.6e-11  Score=113.78  Aligned_cols=181  Identities=20%  Similarity=0.190  Sum_probs=154.1

Q ss_pred             hhHHHHHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHc
Q 005282           63 TDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDT  142 (704)
Q Consensus        63 ~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~  142 (704)
                      .++.++..++.++.+.+..+..+..+.+.|+++.+..+|.++++          .++..|+++|.|++.+.+++..+.. 
T Consensus        25 ~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~----------~vr~~AL~aL~Nls~~~en~~~Ik~-   93 (254)
T PF04826_consen   25 EDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNP----------SVREKALNALNNLSVNDENQEQIKM-   93 (254)
T ss_pred             CChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCCh----------HHHHHHHHHHHhcCCChhhHHHHHH-
Confidence            56678999999999999999999999999999999999999876          9999999999999988888887653 


Q ss_pred             CCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhcc
Q 005282          143 GALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAF  222 (704)
Q Consensus       143 g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~  222 (704)
                       .++.+++.+.+...++      +++..++.+|.+++..+ .....+  .+.++.++.+|.+++..++..++.+|.+|+.
T Consensus        94 -~i~~Vc~~~~s~~lns------~~Q~agLrlL~nLtv~~-~~~~~l--~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~  163 (254)
T PF04826_consen   94 -YIPQVCEETVSSPLNS------EVQLAGLRLLTNLTVTN-DYHHML--ANYIPDLLSLLSSGSEKTKVQVLKVLVNLSE  163 (254)
T ss_pred             -HHHHHHHHHhcCCCCC------HHHHHHHHHHHccCCCc-chhhhH--HhhHHHHHHHHHcCChHHHHHHHHHHHHhcc
Confidence             4777777666543322      88999999999998643 334444  3579999999999999999999999999996


Q ss_pred             CCchhhHHhHhcCChHHHHHhhcCC-CHHHHHHHHHHHHHHhcC
Q 005282          223 KNDENKKLIVECNALPTLVLMLRSE-DASVHFEAVGVIGNLVHS  265 (704)
Q Consensus       223 ~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~  265 (704)
                       ++.....+...++++.++.++... +.++...++..+.||..+
T Consensus       164 -np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~  206 (254)
T PF04826_consen  164 -NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN  206 (254)
T ss_pred             -CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence             888888888889999999999864 788999999999999743

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=99.39  E-value=4e-11  Score=122.50  Aligned_cols=390  Identities=14%  Similarity=0.144  Sum_probs=274.0

Q ss_pred             HHHHHHHHHHhhc-ChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHHHHHcCCc
Q 005282           68 AKTASHALVEFAK-NEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQIIVDTGAL  145 (704)
Q Consensus        68 ~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~~~~g~l  145 (704)
                      ...+..-..+.+- .+.....+++.|+++.|+.+++..+.        .++.+.+.+.+++.+. +.......+.+.+.+
T Consensus        26 lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~--------s~~~k~~~~~llns~f~~eqd~v~svL~~~~l   97 (678)
T KOG1293|consen   26 LVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDG--------STELKNGFAVLLNSLFLGEQDKVDSVLRIIEL   97 (678)
T ss_pred             HHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccccCC--------chhhhhhHHHHHHhHHhhccchHHHHHHHhhH
Confidence            4566777777655 45555678899999999999999887        4578888888888888 788888999999999


Q ss_pred             HHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhh--hhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccC
Q 005282          146 PHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTR--VRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFK  223 (704)
Q Consensus       146 ~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~--~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~  223 (704)
                      +.|++++.+.+.       ..+++.++.++.++...++.....  .....+++.+..++..+.......-+....+++. 
T Consensus        98 l~Ll~LLs~sD~-------~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~-  169 (678)
T KOG1293|consen   98 LKLLQLLSESDS-------LNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSS-  169 (678)
T ss_pred             HHHHHHhcCcch-------HhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccccc-
Confidence            999999998872       188999999999998655443222  2223344555544443555555566666666664 


Q ss_pred             CchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHH---HHhcCChhhHHHHH----HcCCHH--HHHHHhcCCChhHH
Q 005282          224 NDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIG---NLVHSSPSIKKEVI----LAGALQ--PVIGLLSSSCSESK  294 (704)
Q Consensus       224 ~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~---~l~~~~~~~~~~~~----~~~~l~--~L~~ll~~~~~~~~  294 (704)
                      .++.+..+.+.|+.+.+.-++.......|..|+.++.   ++..+++.....+.    ..|+.+  .+..++++++...+
T Consensus       170 ~~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~  249 (678)
T KOG1293|consen  170 TKDHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSER  249 (678)
T ss_pred             cchhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHH
Confidence            6788888889999999988888888999999999999   88777776555444    345555  45577777777777


Q ss_pred             HHHHHHHHHHhccCCcchH---------------------------------------------------HHHhcCChHH
Q 005282          295 REAALLLGQFAAADSNSKV---------------------------------------------------HIVQRGAVRP  323 (704)
Q Consensus       295 ~~a~~~L~~l~~~~~~~~~---------------------------------------------------~~~~~~~i~~  323 (704)
                      ..++.++.++...+.+...                                                   ...+...++.
T Consensus       250 l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~  329 (678)
T KOG1293|consen  250 LRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKT  329 (678)
T ss_pred             HHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhh
Confidence            7777777666543300000                                                   0001111122


Q ss_pred             HHHhhC----------------------------------------------------CCCHHHHHHHHHHHHHhhcCCc
Q 005282          324 LIEMLQ----------------------------------------------------SPDSQLKEMSAFALGRLAQDTH  351 (704)
Q Consensus       324 L~~ll~----------------------------------------------------~~~~~v~~~a~~~L~~l~~~~~  351 (704)
                      +.+++.                                                    ..|...+.+|+..+.+++..-.
T Consensus       330 ~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~  409 (678)
T KOG1293|consen  330 TTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVS  409 (678)
T ss_pred             HHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHH
Confidence            222211                                                    1122344455555555543321


Q ss_pred             -hhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHccc-CCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHH
Q 005282          352 -NQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLAD-NEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEE  429 (704)
Q Consensus       352 -~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~  429 (704)
                       -+..+....+.++++++++.++..++..+.++|+|+.. ...-+..+++.|+++.                        
T Consensus       410 aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~------------------------  465 (678)
T KOG1293|consen  410 ALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDI------------------------  465 (678)
T ss_pred             HHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHH------------------------
Confidence             11223445678899999999999999999999999985 5666778888887654                        


Q ss_pred             HhhcchhHHHHHHHhhccHHHHHHHHHHHHhccC--CCccceeeecCCcHHHHHHHHhhcchhhhhhHHHHHHHHhhhc
Q 005282          430 KVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCA--PDDCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLATKA  506 (704)
Q Consensus       430 ~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~  506 (704)
                               +..++.+.++.++..+.|+|.++.-  .+..+..+...=+...|..+..++++.||+.+...|.||...+
T Consensus       466 ---------l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~  535 (678)
T KOG1293|consen  466 ---------LESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNS  535 (678)
T ss_pred             ---------HHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCc
Confidence                     6678888999999999999999943  3334444444456677888999999999999999999998765

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.39  E-value=1.4e-08  Score=111.14  Aligned_cols=336  Identities=18%  Similarity=0.167  Sum_probs=224.1

Q ss_pred             chhhHHHHHHHHHHHHhhhccCCchhhHHHHHHHHHHHHHhhc-ChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCch
Q 005282           38 ATQQDLVQDIRAQIDILNSKFSSDETDRAAAKTASHALVEFAK-NEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEH  116 (704)
Q Consensus        38 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~  116 (704)
                      +....+..-+|.++..+......++++  ....++..|..+.. .|...+... ..++..-+++..+..-        |.
T Consensus       195 ~~~~~~~~llP~~l~vl~~~i~~~d~~--~a~~~l~~l~El~e~~pk~l~~~l-~~ii~~~l~Ia~n~~l--------~~  263 (1075)
T KOG2171|consen  195 SEVDKFRDLLPSLLNVLQEVIQDGDDD--AAKSALEALIELLESEPKLLRPHL-SQIIQFSLEIAKNKEL--------EN  263 (1075)
T ss_pred             HHHHHHHHHhHHHHHHhHhhhhccchH--HHHHHHHHHHHHHhhchHHHHHHH-HHHHHHHHHHhhcccc--------cH
Confidence            445667777788888887777655543  35677888888877 344433321 2456777777777765        78


Q ss_pred             HHHHHHHHHHHhhc-CChhhHHHHHH--cCCcHHHHHHHhhccCCC--------CCcchhHHHHHHHHHHHHhhhcChhh
Q 005282          117 EVEKECAFALGLLA-VKPEHQQIIVD--TGALPHLVSLLKQYKNGG--------NSRALSGVIRRAADAITNLAHENANI  185 (704)
Q Consensus       117 ~v~~~a~~~L~~l~-~~~~~~~~~~~--~g~l~~L~~lL~~~~~~~--------~~~~~~~~~~~a~~~L~~l~~~~~~~  185 (704)
                      .+|..|+.+|..++ .-|...+....  .-.++.++.++..-..+.        ..+....--..|..+|..++.+-+..
T Consensus       264 ~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~  343 (1075)
T KOG2171|consen  264 SIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGK  343 (1075)
T ss_pred             HHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChh
Confidence            99999999999999 54444333222  234566666665433320        00001124556777777777433221


Q ss_pred             hhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcC
Q 005282          186 KTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHS  265 (704)
Q Consensus       186 ~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~  265 (704)
                         .+-.-.++.+-.++.+.++.-|.+++.+|..++.|..+.-.... ..+++.++..|+++++.||..|+.+++.++.+
T Consensus       344 ---~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l-~~Il~~Vl~~l~DphprVr~AA~naigQ~std  419 (1075)
T KOG2171|consen  344 ---QVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNL-PKILPIVLNGLNDPHPRVRYAALNAIGQMSTD  419 (1075)
T ss_pred             ---hehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHH-HHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhh
Confidence               23334456677788899999999999999999987766554432 34788899999999999999999999999976


Q ss_pred             ChhhHHHHHHcCCHHHHHHHhcCC-ChhHHHHHHHHHHHHhccCCcchHHHHhcCChH-HHHHhhCCCCHHHHHHHHHHH
Q 005282          266 SPSIKKEVILAGALQPVIGLLSSS-CSESKREAALLLGQFAAADSNSKVHIVQRGAVR-PLIEMLQSPDSQLKEMSAFAL  343 (704)
Q Consensus       266 ~~~~~~~~~~~~~l~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~-~L~~ll~~~~~~v~~~a~~~L  343 (704)
                      -....+.-....+++.|+..+.+. ++.++..|+.++.|++.........-+-.++++ .+..++.++.+.+++.+..+|
T Consensus       420 l~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaI  499 (1075)
T KOG2171|consen  420 LQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAI  499 (1075)
T ss_pred             hcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence            544445455567788888888765 568899999999999865554433333345666 444455678899999999999


Q ss_pred             HHhhcCCchhhhHHhhCChHHHHHhhcCCC-h---hHHHHHHHHHHHcc
Q 005282          344 GRLAQDTHNQAGIAQDGGILPLLKLLDSKN-G---SLQHNAAFALYGLA  388 (704)
Q Consensus       344 ~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~-~---~v~~~a~~~L~~l~  388 (704)
                      +..+...+..-.-.-...++.|.+.|+..+ .   .+|.....++.-++
T Consensus       500 asvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~  548 (1075)
T KOG2171|consen  500 ASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIA  548 (1075)
T ss_pred             HHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHH
Confidence            999976554433333445666777776544 3   45555445554443

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.36  E-value=2.8e-10  Score=130.67  Aligned_cols=273  Identities=22%  Similarity=0.174  Sum_probs=208.0

Q ss_pred             HHhhhccCCchhhHHHHHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcC
Q 005282           52 DILNSKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAV  131 (704)
Q Consensus        52 ~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~  131 (704)
                      +.|...+.  ++++.++..|+..|..+.          ..+.++.|+.+|.+++.          .||..|+.+|..+..
T Consensus       624 ~~L~~~L~--D~d~~VR~~Av~~L~~~~----------~~~~~~~L~~aL~D~d~----------~VR~~Aa~aL~~l~~  681 (897)
T PRK13800        624 AELAPYLA--DPDPGVRRTAVAVLTETT----------PPGFGPALVAALGDGAA----------AVRRAAAEGLRELVE  681 (897)
T ss_pred             HHHHHHhc--CCCHHHHHHHHHHHhhhc----------chhHHHHHHHHHcCCCH----------HHHHHHHHHHHHHHh
Confidence            34444443  355667888888888764          23457999999988765          999999999998862


Q ss_pred             ChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHH
Q 005282          132 KPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQR  211 (704)
Q Consensus       132 ~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~  211 (704)
                      ..         ...+.|...|.+.+.        .++..++.+|..+...+            ...++..|.++++.+|.
T Consensus       682 ~~---------~~~~~L~~~L~~~d~--------~VR~~A~~aL~~~~~~~------------~~~l~~~L~D~d~~VR~  732 (897)
T PRK13800        682 VL---------PPAPALRDHLGSPDP--------VVRAAALDVLRALRAGD------------AALFAAALGDPDHRVRI  732 (897)
T ss_pred             cc---------CchHHHHHHhcCCCH--------HHHHHHHHHHHhhccCC------------HHHHHHHhcCCCHHHHH
Confidence            21         123567777776443        89999999998875221            34578899999999999


Q ss_pred             HHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCCh
Q 005282          212 AAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCS  291 (704)
Q Consensus       212 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~  291 (704)
                      .|+.+|..+..              .+.|..++.++++.||..++.+|+.+....         ...++.|..++.++++
T Consensus       733 ~Av~aL~~~~~--------------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~---------~~~~~~L~~ll~D~d~  789 (897)
T PRK13800        733 EAVRALVSVDD--------------VESVAGAATDENREVRIAVAKGLATLGAGG---------APAGDAVRALTGDPDP  789 (897)
T ss_pred             HHHHHHhcccC--------------cHHHHHHhcCCCHHHHHHHHHHHHHhcccc---------chhHHHHHHHhcCCCH
Confidence            99999998631              245678899999999999999999986432         1237788899999999


Q ss_pred             hHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcC
Q 005282          292 ESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDS  371 (704)
Q Consensus       292 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~  371 (704)
                      .++..|+.+|+++..  +.        .+.+.+...+.++++.+|..|+.+|+.+..          ...++.|+.+|.+
T Consensus       790 ~VR~aA~~aLg~~g~--~~--------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~----------~~a~~~L~~~L~D  849 (897)
T PRK13800        790 LVRAAALAALAELGC--PP--------DDVAAATAALRASAWQVRQGAARALAGAAA----------DVAVPALVEALTD  849 (897)
T ss_pred             HHHHHHHHHHHhcCC--cc--------hhHHHHHHHhcCCChHHHHHHHHHHHhccc----------cchHHHHHHHhcC
Confidence            999999999998742  11        134668888999999999999999987643          2355889999999


Q ss_pred             CChhHHHHHHHHHHHcccCCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHH
Q 005282          372 KNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVK  451 (704)
Q Consensus       372 ~~~~v~~~a~~~L~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~  451 (704)
                      .++.||..|+.+|..+..++.                                          ..+.|...+.+.++.|+
T Consensus       850 ~~~~VR~~A~~aL~~~~~~~~------------------------------------------a~~~L~~al~D~d~~Vr  887 (897)
T PRK13800        850 PHLDVRKAAVLALTRWPGDPA------------------------------------------ARDALTTALTDSDADVR  887 (897)
T ss_pred             CCHHHHHHHHHHHhccCCCHH------------------------------------------HHHHHHHHHhCCCHHHH
Confidence            999999999999999732222                                          22345567888999999


Q ss_pred             HHHHHHHHh
Q 005282          452 RRVTLALAH  460 (704)
Q Consensus       452 ~~a~~~L~~  460 (704)
                      ..|..+|.+
T Consensus       888 ~~A~~aL~~  896 (897)
T PRK13800        888 AYARRALAH  896 (897)
T ss_pred             HHHHHHHhh
Confidence            999999864

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.33  E-value=9.6e-10  Score=119.93  Aligned_cols=382  Identities=19%  Similarity=0.177  Sum_probs=248.1

Q ss_pred             HHHHHHHHHHHHhhcC--hhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHcC
Q 005282           66 AAAKTASHALVEFAKN--EEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTG  143 (704)
Q Consensus        66 ~~~~~a~~~L~~l~~~--~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g  143 (704)
                      .++.+-+.++..++++  ++     -..+.++.|.+..++++.          ..|+.|..+|..+...-..+    ..+
T Consensus        95 ~vr~k~~dviAeia~~~l~e-----~WPell~~L~q~~~S~~~----------~~rE~al~il~s~~~~~~~~----~~~  155 (1075)
T KOG2171|consen   95 SVRHKLADVIAEIARNDLPE-----KWPELLQFLFQSTKSPNP----------SLRESALLILSSLPETFGNT----LQP  155 (1075)
T ss_pred             HHHHHHHHHHHHHHHhcccc-----chHHHHHHHHHHhcCCCc----------chhHHHHHHHHhhhhhhccc----cch
Confidence            3556666666666653  22     123456777777777765          89999999999998322211    123


Q ss_pred             CcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhc-cCCcHHHHHHh----cCCCHHHHHHHHHHHH
Q 005282          144 ALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRV-EDGIPPLVELL----KFVDVKVQRAAAGALR  218 (704)
Q Consensus       144 ~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~ll----~~~~~~~~~~a~~~L~  218 (704)
                      .++.+..++...-.+++.    .++..++.++..++...+..+..... ...+|.++..+    ..++......++.+|.
T Consensus       156 ~~~~l~~lf~q~~~d~s~----~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~  231 (1075)
T KOG2171|consen  156 HLDDLLRLFSQTMTDPSS----PVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALI  231 (1075)
T ss_pred             hHHHHHHHHHHhccCCcc----hHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHH
Confidence            455666666655443332    69999999999988655422222222 23455555554    4677777888999999


Q ss_pred             HhccCCchhhHHhHhcCChHHHHHhhcCC--CHHHHHHHHHHHHHHhcCChhhHHHHHH--cCCHHHHHHHhcCCC----
Q 005282          219 TLAFKNDENKKLIVECNALPTLVLMLRSE--DASVHFEAVGVIGNLVHSSPSIKKEVIL--AGALQPVIGLLSSSC----  290 (704)
Q Consensus       219 ~l~~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~l~~L~~ll~~~~----  290 (704)
                      .++...+..-..... .++...+...++.  +..+|..|+..|..+++..+...+....  ...++.++.++....    
T Consensus       232 El~e~~pk~l~~~l~-~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~e  310 (1075)
T KOG2171|consen  232 ELLESEPKLLRPHLS-QIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDE  310 (1075)
T ss_pred             HHHhhchHHHHHHHH-HHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchh
Confidence            988644443333322 2466666666643  7899999999999999775544333222  234556666664221    


Q ss_pred             ------------hhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHh
Q 005282          291 ------------SESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQ  358 (704)
Q Consensus       291 ------------~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  358 (704)
                                  ......|..+|..++.+-+....   -.-+++.+-.++++++..-|.+++.+|+.++.+......-.-
T Consensus       311 w~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v---~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l  387 (1075)
T KOG2171|consen  311 WSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQV---LPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNL  387 (1075)
T ss_pred             hccccccccccccCcHHHHHHHHHHHHhcCChhhe---hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence                        11356677788887764332211   122467777788999999999999999999988765443334


Q ss_pred             hCChHHHHHhhcCCChhHHHHHHHHHHHcccC-CchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhH
Q 005282          359 DGGILPLLKLLDSKNGSLQHNAAFALYGLADN-EDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLN  437 (704)
Q Consensus       359 ~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (704)
                      ...++.++..+.+.++.||..|+.+++.++.+ ....                                 +.+.+..+.+
T Consensus       388 ~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~i---------------------------------qk~~~e~l~~  434 (1075)
T KOG2171|consen  388 PKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEI---------------------------------QKKHHERLPP  434 (1075)
T ss_pred             HHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHH---------------------------------HHHHHHhccH
Confidence            45677788889999999999999999999752 1111                                 1122233455


Q ss_pred             HHHHHHhh-ccHHHHHHHHHHHHhccCCCccc-eeeecCCcHH-HHHHHHhhcchhhhhhHHHHHHHHhhhcC
Q 005282          438 HLLYLLRV-ADRAVKRRVTLALAHLCAPDDCK-TIFIDNNGLE-LLLGLLESTSVKQREESSVALYKLATKAT  507 (704)
Q Consensus       438 ~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~-~~l~~~~~i~-~L~~ll~~~~~~~~~~a~~~L~~L~~~~~  507 (704)
                      .|+..+.+ +++.++.+|+.++-|+....... -.-.-.+.+. .+..+++++.+.+|..+..+|...+....
T Consensus       435 aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~  507 (1075)
T KOG2171|consen  435 ALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQ  507 (1075)
T ss_pred             HHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh
Confidence            66777755 57899999999999995432222 1111124555 45556678999999999999998877653

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.33  E-value=3.1e-11  Score=103.49  Aligned_cols=117  Identities=37%  Similarity=0.457  Sum_probs=110.0

Q ss_pred             hhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh
Q 005282          189 VRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPS  268 (704)
Q Consensus       189 ~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~  268 (704)
                      +.+.|+++.+++++.++++.++..++++|++++.+.++....+.+.|+++.+++++.++++.++..++++|++++...+.
T Consensus         3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~   82 (120)
T cd00020           3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPED   82 (120)
T ss_pred             HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHH
Confidence            56789999999999999999999999999999987789999999999999999999999999999999999999988777


Q ss_pred             hHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHh
Q 005282          269 IKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFA  305 (704)
Q Consensus       269 ~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~  305 (704)
                      ....+...|+++.+++++.+.+.+++..++++|.+++
T Consensus        83 ~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~  119 (120)
T cd00020          83 NKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA  119 (120)
T ss_pred             HHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence            7777888999999999999999999999999999986

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.31  E-value=3.6e-11  Score=103.11  Aligned_cols=119  Identities=38%  Similarity=0.527  Sum_probs=109.7

Q ss_pred             HHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHH
Q 005282          138 IIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGAL  217 (704)
Q Consensus       138 ~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L  217 (704)
                      .+.+.|+++.+++++.+.+.        .++..++++|++++..++.....+...|+++.+++++.++++.++..++++|
T Consensus         2 ~~~~~~~i~~l~~~l~~~~~--------~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L   73 (120)
T cd00020           2 AVIQAGGLPALVSLLSSSDE--------NVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWAL   73 (120)
T ss_pred             hHHHcCChHHHHHHHHcCCH--------HHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHH
Confidence            46688999999999997764        9999999999999987788888899999999999999999999999999999


Q ss_pred             HHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhc
Q 005282          218 RTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVH  264 (704)
Q Consensus       218 ~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~  264 (704)
                      ++++.+.+.....+.+.|+++.+++++.+++..+++.++++|.++++
T Consensus        74 ~~l~~~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          74 RNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS  120 (120)
T ss_pred             HHHccCcHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence            99998777788888899999999999999999999999999999873

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=99.29  E-value=5.4e-10  Score=113.37  Aligned_cols=346  Identities=15%  Similarity=0.146  Sum_probs=237.9

Q ss_pred             CCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhcc-----CCcHHHHHHhcCCCHHHHHHHHHHH
Q 005282          143 GALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVE-----DGIPPLVELLKFVDVKVQRAAAGAL  217 (704)
Q Consensus       143 g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-----~~i~~L~~ll~~~~~~~~~~a~~~L  217 (704)
                      ..+..++.+++....       .++.++.+..+..+...++.....+.+.     +...+++.+|..++..+...++..+
T Consensus        53 ~y~~~~l~ll~~~~~-------~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iL  125 (429)
T cd00256          53 QYVKTFVNLLSQIDK-------DDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSIL  125 (429)
T ss_pred             HHHHHHHHHHhccCc-------HHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHH
Confidence            356677778877554       3899999999999998777665555553     4567888899999999999999999


Q ss_pred             HHhccCCchhhHHhHhcCChHHHHHhhcCC-CHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCC--ChhHH
Q 005282          218 RTLAFKNDENKKLIVECNALPTLVLMLRSE-DASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSS--CSESK  294 (704)
Q Consensus       218 ~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~~~  294 (704)
                      ..+....+.........-..+.+...+.++ +...+..++.+|..+... +..+..+.+.++++.|+.+|+..  +...+
T Consensus       126 t~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~-~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~  204 (429)
T cd00256         126 AKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRV-DEYRFAFVLADGVPTLVKLLSNATLGFQLQ  204 (429)
T ss_pred             HHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCC-chHHHHHHHccCHHHHHHHHhhccccHHHH
Confidence            999754443222111111334455555543 467778888999999876 67788888888999999999753  34678


Q ss_pred             HHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCCc-------hhhhHHhhCChHHHH
Q 005282          295 REAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQS-PDSQLKEMSAFALGRLAQDTH-------NQAGIAQDGGILPLL  366 (704)
Q Consensus       295 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~-------~~~~~~~~~~~~~L~  366 (704)
                      ..++.+++-++. +++....+...++++.|+.+++. ...++.+.+..+|.|+...+.       ....++..|.+ +++
T Consensus       205 Y~~ll~lWlLSF-~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~-~~l  282 (429)
T cd00256         205 YQSIFCIWLLTF-NPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVL-KTL  282 (429)
T ss_pred             HHHHHHHHHHhc-cHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChH-HHH
Confidence            899999998876 44455556667999999999985 567899999999999997432       12334555554 555


Q ss_pred             HhhcC---CChhHHHHHHH-------HHHHcccCCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchh
Q 005282          367 KLLDS---KNGSLQHNAAF-------ALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVL  436 (704)
Q Consensus       367 ~ll~~---~~~~v~~~a~~-------~L~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (704)
                      +.|..   +|+++....-.       -+..+++-++...++.. |-+.-    .+.+....=|.. ...+..+ ....++
T Consensus       283 ~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~s-g~L~W----Sp~H~se~FW~E-N~~kf~~-~~~~ll  355 (429)
T cd00256         283 QSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRS-GRLHW----SPVHKSEKFWRE-NADRLNE-KNYELL  355 (429)
T ss_pred             HHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhc-CCccC----CCCCCCchHHHH-HHHHHHh-cchHHH
Confidence            55533   46665443332       23344444444444433 44332    111111111111 1111111 135678


Q ss_pred             HHHHHHHh-hccHHHHHHHHHHHHhccC-CCccceeeecCCcHHHHHHHHhhcchhhhhhHHHHHHHHhhh
Q 005282          437 NHLLYLLR-VADRAVKRRVTLALAHLCA-PDDCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLATK  505 (704)
Q Consensus       437 ~~L~~ll~-~~~~~v~~~a~~~L~~l~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~  505 (704)
                      ..|+.++. +.++.+..-||.-|+.+++ .|..+..+.+.||-..+.+++.+++++|+..|..++..|..+
T Consensus       356 k~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~~  426 (429)
T cd00256         356 KILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMVH  426 (429)
T ss_pred             HHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence            88999994 5678888889999999977 567888877889999999999999999999999999888654

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=99.29  E-value=1.8e-09  Score=109.59  Aligned_cols=320  Identities=15%  Similarity=0.206  Sum_probs=213.9

Q ss_pred             HHHHHhhhccCCchhhHHHHHHHHHHHHHhhc-ChhHHHHHHhC-----CChHHHHhhccCCCcCCCCCCCCchHHHHHH
Q 005282           49 AQIDILNSKFSSDETDRAAAKTASHALVEFAK-NEEIVSLIVDN-----GAVPALVEHLQTPPQLTNAQIPYEHEVEKEC  122 (704)
Q Consensus        49 ~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~l~~~-----g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a  122 (704)
                      ..+..++.+++..+. .....-.+..+..+.. +|.....+.+.     .....++.+|..++.          -+...|
T Consensus        53 ~y~~~~l~ll~~~~~-~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~----------~i~~~a  121 (429)
T cd00256          53 QYVKTFVNLLSQIDK-DDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQ----------FIVHMS  121 (429)
T ss_pred             HHHHHHHHHHhccCc-HHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCch----------hHHHHH
Confidence            334444444432222 2344555666666655 46655666553     567778888887654          799999


Q ss_pred             HHHHHhhc-CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHH
Q 005282          123 AFALGLLA-VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVEL  201 (704)
Q Consensus       123 ~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l  201 (704)
                      +.+|+.+. .++.........-.++.+...+++.++       ...+..|+.+|..+.. .++.|..+.+.++++.|+.+
T Consensus       122 ~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~-------~~~~~~~v~~L~~LL~-~~~~R~~f~~~~~v~~L~~~  193 (429)
T cd00256         122 FSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITN-------NDYVQTAARCLQMLLR-VDEYRFAFVLADGVPTLVKL  193 (429)
T ss_pred             HHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCC-------cchHHHHHHHHHHHhC-CchHHHHHHHccCHHHHHHH
Confidence            99999998 444322211111123344555554422       1677888899999886 67788889899999999999


Q ss_pred             hcC--CCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhc-CCCHHHHHHHHHHHHHHhcCC------hhhHHH
Q 005282          202 LKF--VDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLR-SEDASVHFEAVGVIGNLVHSS------PSIKKE  272 (704)
Q Consensus       202 l~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~------~~~~~~  272 (704)
                      |+.  .+..++..++-++|-++. +++....+...+.++.++++++ +..+.+.+.++.++.|+...+      ......
T Consensus       194 L~~~~~~~Ql~Y~~ll~lWlLSF-~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~  272 (429)
T cd00256         194 LSNATLGFQLQYQSIFCIWLLTF-NPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQ  272 (429)
T ss_pred             HhhccccHHHHHHHHHHHHHHhc-cHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHH
Confidence            985  356899999999999997 5666677778899999999998 467899999999999999643      123344


Q ss_pred             HHHcCCHHHHHHHhcC--CChhHHHHHHHH-------HHHHhcc--------------CC---------cchHHHHhc--
Q 005282          273 VILAGALQPVIGLLSS--SCSESKREAALL-------LGQFAAA--------------DS---------NSKVHIVQR--  318 (704)
Q Consensus       273 ~~~~~~l~~L~~ll~~--~~~~~~~~a~~~-------L~~l~~~--------------~~---------~~~~~~~~~--  318 (704)
                      ++..|+++.+-.+...  .|+++....-..       +..+++-              ++         ++...+-+.  
T Consensus       273 mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~  352 (429)
T cd00256         273 MVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNY  352 (429)
T ss_pred             HHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcch
Confidence            5555665544444332  234432221111       1111100              11         222233333  


Q ss_pred             CChHHHHHhhC-CCCHHHHHHHHHHHHHhhcCCc-hhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcc
Q 005282          319 GAVRPLIEMLQ-SPDSQLKEMSAFALGRLAQDTH-NQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLA  388 (704)
Q Consensus       319 ~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~  388 (704)
                      .++..|+++|. +.++.+...||.=++.++.+.+ ++..+-+.|+=..+++++.+.|++|+.+|+.++..+.
T Consensus       353 ~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm  424 (429)
T cd00256         353 ELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLM  424 (429)
T ss_pred             HHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            35788999995 5678888999999999997754 5555556688888999999999999999999998773

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.28  E-value=6.9e-10  Score=121.98  Aligned_cols=351  Identities=23%  Similarity=0.296  Sum_probs=242.5

Q ss_pred             hhHHHHHHHHHHHHHhhc-ChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHH
Q 005282           63 TDRAAAKTASHALVEFAK-NEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVD  141 (704)
Q Consensus        63 ~~~~~~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~  141 (704)
                      .+...++-+.-.+..+.. +++....+     +..+.+=|.++++          .++..|++++++++ +++..+.+  
T Consensus        54 ~~~~~Krl~yl~l~~~~~~~~~~~~l~-----~n~l~kdl~~~n~----------~~~~lAL~~l~~i~-~~~~~~~l--  115 (526)
T PF01602_consen   54 KDLELKRLGYLYLSLYLHEDPELLILI-----INSLQKDLNSPNP----------YIRGLALRTLSNIR-TPEMAEPL--  115 (526)
T ss_dssp             SSHHHHHHHHHHHHHHTTTSHHHHHHH-----HHHHHHHHCSSSH----------HHHHHHHHHHHHH--SHHHHHHH--
T ss_pred             CCHHHHHHHHHHHHHHhhcchhHHHHH-----HHHHHHhhcCCCH----------HHHHHHHhhhhhhc-ccchhhHH--
Confidence            334445555555565555 45543333     6777777887764          89999999999988 45554443  


Q ss_pred             cCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 005282          142 TGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLA  221 (704)
Q Consensus       142 ~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~  221 (704)
                         ++.+.+++.++.+        .++..|+.++.++....|+.   +... .++.+.+++.+.++.++..|+.++..+ 
T Consensus       116 ---~~~v~~ll~~~~~--------~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-  179 (526)
T PF01602_consen  116 ---IPDVIKLLSDPSP--------YVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI-  179 (526)
T ss_dssp             ---HHHHHHHHHSSSH--------HHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-
T ss_pred             ---HHHHHHHhcCCch--------HHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhccCCcchhHHHHHHHHHHH-
Confidence               5788888887765        99999999999999776653   2222 689999999999999999999999999 


Q ss_pred             cCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHH
Q 005282          222 FKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLL  301 (704)
Q Consensus       222 ~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L  301 (704)
                      ..++.... -.-...++.|.+++...++..+..+++.+..++...+.....   ...++.+..++.+.++.+...++.++
T Consensus       180 ~~~~~~~~-~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i  255 (526)
T PF01602_consen  180 KCNDDSYK-SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLI  255 (526)
T ss_dssp             HCTHHHHT-THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCcchhh-hhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHH
Confidence            22333211 112223566666678899999999999999998765544321   45678888888888889999999999


Q ss_pred             HHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhh-cCCChhHHHHH
Q 005282          302 GQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLL-DSKNGSLQHNA  380 (704)
Q Consensus       302 ~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll-~~~~~~v~~~a  380 (704)
                      ..+.... .     .-..+++.|..++.++++.++..++..|..++....   ..+.  .....+..+ .+.+..++..+
T Consensus       256 ~~l~~~~-~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~---~~v~--~~~~~~~~l~~~~d~~Ir~~~  324 (526)
T PF01602_consen  256 IKLSPSP-E-----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNP---PAVF--NQSLILFFLLYDDDPSIRKKA  324 (526)
T ss_dssp             HHHSSSH-H-----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCH---HHHG--THHHHHHHHHCSSSHHHHHHH
T ss_pred             HHhhcch-H-----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccc---hhhh--hhhhhhheecCCCChhHHHHH
Confidence            9875422 2     334578999999999999999999999999997661   1222  222333344 48899999999


Q ss_pred             HHHHHHcccCCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHH-hhccHHHHHHHHHHHH
Q 005282          381 AFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLL-RVADRAVKRRVTLALA  459 (704)
Q Consensus       381 ~~~L~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll-~~~~~~v~~~a~~~L~  459 (704)
                      +.+|..++. +++...++                                      +.|...+ ...+++++..++..|+
T Consensus       325 l~lL~~l~~-~~n~~~Il--------------------------------------~eL~~~l~~~~d~~~~~~~i~~I~  365 (526)
T PF01602_consen  325 LDLLYKLAN-ESNVKEIL--------------------------------------DELLKYLSELSDPDFRRELIKAIG  365 (526)
T ss_dssp             HHHHHHH---HHHHHHHH--------------------------------------HHHHHHHHHC--HHHHHHHHHHHH
T ss_pred             HHHHhhccc-ccchhhHH--------------------------------------HHHHHHHHhccchhhhhhHHHHHH
Confidence            999999974 33333333                                      3455556 3346677777777777


Q ss_pred             hccCCC-ccceeeecCCcHHHHHHHHhhcchhhhhhHHHHHHHHhhhc
Q 005282          460 HLCAPD-DCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLATKA  506 (704)
Q Consensus       460 ~l~~~~-~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~  506 (704)
                      .++... ...     .-.+..+++++..+++.+...+...+.++....
T Consensus       366 ~la~~~~~~~-----~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~  408 (526)
T PF01602_consen  366 DLAEKFPPDA-----EWYVDTLLKLLEISGDYVSNEIINVIRDLLSNN  408 (526)
T ss_dssp             HHHHHHGSSH-----HHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHS
T ss_pred             HHHhccCchH-----HHHHHHHHHhhhhccccccchHHHHHHHHhhcC
Confidence            775421 111     124667777777666677777777777776654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.26  E-value=6.5e-10  Score=122.18  Aligned_cols=276  Identities=23%  Similarity=0.260  Sum_probs=202.3

Q ss_pred             hhHHHHHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHHHHH
Q 005282           63 TDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQIIVD  141 (704)
Q Consensus        63 ~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~~~  141 (704)
                      .++.++.-|++++.++. +++....+     ++.+.+++.++++          .||..|+.++.++. .+|+....   
T Consensus        91 ~n~~~~~lAL~~l~~i~-~~~~~~~l-----~~~v~~ll~~~~~----------~VRk~A~~~l~~i~~~~p~~~~~---  151 (526)
T PF01602_consen   91 PNPYIRGLALRTLSNIR-TPEMAEPL-----IPDVIKLLSDPSP----------YVRKKAALALLKIYRKDPDLVED---  151 (526)
T ss_dssp             SSHHHHHHHHHHHHHH--SHHHHHHH-----HHHHHHHHHSSSH----------HHHHHHHHHHHHHHHHCHCCHHG---
T ss_pred             CCHHHHHHHHhhhhhhc-ccchhhHH-----HHHHHHHhcCCch----------HHHHHHHHHHHHHhccCHHHHHH---
Confidence            55678889999999877 56666665     7899999998865          99999999999999 77765322   


Q ss_pred             cCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 005282          142 TGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLA  221 (704)
Q Consensus       142 ~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~  221 (704)
                      . .++.+.+++.+.+.        .++..|+.++..+ ..++.... -.....+..|.+++...++-.+..++..+..++
T Consensus       152 ~-~~~~l~~lL~d~~~--------~V~~~a~~~l~~i-~~~~~~~~-~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~  220 (526)
T PF01602_consen  152 E-LIPKLKQLLSDKDP--------SVVSAALSLLSEI-KCNDDSYK-SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYA  220 (526)
T ss_dssp             G-HHHHHHHHTTHSSH--------HHHHHHHHHHHHH-HCTHHHHT-THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTST
T ss_pred             H-HHHHHhhhccCCcc--------hhHHHHHHHHHHH-ccCcchhh-hhHHHHHHHhhhcccccchHHHHHHHHHHHhcc
Confidence            1 47889999977654        8999999999999 22332211 222344555666667899999999999999998


Q ss_pred             cCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHH
Q 005282          222 FKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLL  301 (704)
Q Consensus       222 ~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L  301 (704)
                      ...+.....   ...++.+..++.+.++.|...++.++..+....+      ....+++.|..++.++++.++..++..|
T Consensus       221 ~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~------~~~~~~~~L~~lL~s~~~nvr~~~L~~L  291 (526)
T PF01602_consen  221 PMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE------LLQKAINPLIKLLSSSDPNVRYIALDSL  291 (526)
T ss_dssp             SSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH------HHHHHHHHHHHHHTSSSHHHHHHHHHHH
T ss_pred             cCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH------HHHhhHHHHHHHhhcccchhehhHHHHH
Confidence            644444422   3457788888989999999999999999875422      3345688999999999999999999999


Q ss_pred             HHHhccCCcchHHHHhcCChHHHHHhhC-CCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhh-cCCChhHHHH
Q 005282          302 GQFAAADSNSKVHIVQRGAVRPLIEMLQ-SPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLL-DSKNGSLQHN  379 (704)
Q Consensus       302 ~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll-~~~~~~v~~~  379 (704)
                      ..++..+   ...+.   .....+..+. +++..++..++..|..++.......      .++.|.+.+ ...+++++..
T Consensus       292 ~~l~~~~---~~~v~---~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n~~~------Il~eL~~~l~~~~d~~~~~~  359 (526)
T PF01602_consen  292 SQLAQSN---PPAVF---NQSLILFFLLYDDDPSIRKKALDLLYKLANESNVKE------ILDELLKYLSELSDPDFRRE  359 (526)
T ss_dssp             HHHCCHC---HHHHG---THHHHHHHHHCSSSHHHHHHHHHHHHHH--HHHHHH------HHHHHHHHHHHC--HHHHHH
T ss_pred             HHhhccc---chhhh---hhhhhhheecCCCChhHHHHHHHHHhhcccccchhh------HHHHHHHHHHhccchhhhhh
Confidence            9998654   22222   2333334444 8899999999999999996433222      456777888 4458889999


Q ss_pred             HHHHHHHccc
Q 005282          380 AAFALYGLAD  389 (704)
Q Consensus       380 a~~~L~~l~~  389 (704)
                      ++..++.++.
T Consensus       360 ~i~~I~~la~  369 (526)
T PF01602_consen  360 LIKAIGDLAE  369 (526)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999999974

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.24  E-value=2.7e-10  Score=116.07  Aligned_cols=307  Identities=19%  Similarity=0.160  Sum_probs=210.2

Q ss_pred             CChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHH-HHHc---CCcHHHHHHHhhccCCCCCcchhH
Q 005282           92 GAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQI-IVDT---GALPHLVSLLKQYKNGGNSRALSG  166 (704)
Q Consensus        92 g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~-~~~~---g~l~~L~~lL~~~~~~~~~~~~~~  166 (704)
                      .++|.|.++|.+++.          ...+-|..+|.+++ ++++.-+. +.+.   -.+|.++++.++++.        .
T Consensus       128 elLp~L~~~L~s~d~----------n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~sp--------k  189 (885)
T KOG2023|consen  128 ELLPQLCELLDSPDY----------NTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSP--------K  189 (885)
T ss_pred             hHHHHHHHHhcCCcc----------cccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCCh--------h
Confidence            367999999999875          78999999999999 55554332 1111   257889999998865        8


Q ss_pred             HHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcC
Q 005282          167 VIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRS  246 (704)
Q Consensus       167 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~  246 (704)
                      +|..|+.++..+...... .-...-..++..+..+..+.++++|+..|.++..|.. ....+-...-.++++.+++..++
T Consensus       190 iRs~A~~cvNq~i~~~~q-al~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Lle-vr~dkl~phl~~IveyML~~tqd  267 (885)
T KOG2023|consen  190 IRSHAVGCVNQFIIIQTQ-ALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLE-VRPDKLVPHLDNIVEYMLQRTQD  267 (885)
T ss_pred             HHHHHHhhhhheeecCcH-HHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH-hcHHhcccchHHHHHHHHHHccC
Confidence            999999999887743322 2223345667888888889999999999999999985 32233333334577778888888


Q ss_pred             CCHHHHHHHHHHHHHHhcCChhhHHHHHH--cCCHHHHHHHhcCC-----------------------------------
Q 005282          247 EDASVHFEAVGVIGNLVHSSPSIKKEVIL--AGALQPVIGLLSSS-----------------------------------  289 (704)
Q Consensus       247 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~l~~L~~ll~~~-----------------------------------  289 (704)
                      .|++|...||.....++.. +-.+..+..  ...+|.|+.-+.-+                                   
T Consensus       268 ~dE~VALEACEFwla~aeq-pi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~  346 (885)
T KOG2023|consen  268 VDENVALEACEFWLALAEQ-PICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGN  346 (885)
T ss_pred             cchhHHHHHHHHHHHHhcC-cCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccC
Confidence            9999999999999999976 444443332  34566665433110                                   


Q ss_pred             ---------------------ChhHHHHHHHHHHHHhccCCcchHHHHhcCCh----HHHHHhhCCCCHHHHHHHHHHHH
Q 005282          290 ---------------------CSESKREAALLLGQFAAADSNSKVHIVQRGAV----RPLIEMLQSPDSQLKEMSAFALG  344 (704)
Q Consensus       290 ---------------------~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i----~~L~~ll~~~~~~v~~~a~~~L~  344 (704)
                                           ++.+|...+.+|.-++.        +....++    |.|-..|.+++..+++.+..+|+
T Consensus       347 ~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLan--------vf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlG  418 (885)
T KOG2023|consen  347 GEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLAN--------VFGDELLPILLPLLKEHLSSEEWKVREAGVLALG  418 (885)
T ss_pred             ccccccccccccccccccccccccHhhccHHHHHHHHH--------hhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHH
Confidence                                 02334444444444432        2223344    44444556778899999999999


Q ss_pred             HhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHccc---CCchhhHHHhhCCcccccccccccccchHHHH
Q 005282          345 RLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLAD---NEDNVADLVRVGGVQKLQDGEFTVQPTKDCVA  421 (704)
Q Consensus       345 ~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~---~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~  421 (704)
                      .++.+.-..-.-.-...++.++.+|.++.+-||...||+|...+.   ..+..+.+.                       
T Consensus       419 AIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~-----------------------  475 (885)
T KOG2023|consen  419 AIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFK-----------------------  475 (885)
T ss_pred             HHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhH-----------------------
Confidence            999764221111111346778999999999999999999999874   222112221                       


Q ss_pred             HHHHHHHHHhhcchhHHHHHHHhhccHHHHHHHHHHHHhcc
Q 005282          422 RTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLC  462 (704)
Q Consensus       422 ~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~  462 (704)
                                  .++..++..+-+++..||++||.+.+-+-
T Consensus       476 ------------pvL~~ll~~llD~NK~VQEAAcsAfAtle  504 (885)
T KOG2023|consen  476 ------------PVLEGLLRRLLDSNKKVQEAACSAFATLE  504 (885)
T ss_pred             ------------HHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence                        14455677777889999999999999883

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.24  E-value=4.3e-10  Score=114.63  Aligned_cols=309  Identities=20%  Similarity=0.197  Sum_probs=204.6

Q ss_pred             CCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhc----cCCcHHHHHHhcCCCHHHHHHHHHHHH
Q 005282          143 GALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRV----EDGIPPLVELLKFVDVKVQRAAAGALR  218 (704)
Q Consensus       143 g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~----~~~i~~L~~ll~~~~~~~~~~a~~~L~  218 (704)
                      .++|.|+.+|.+++.        ...+-|..+|..+|.++...-..-..    .-.+|.++++.++++|.+|..|+.++.
T Consensus       128 elLp~L~~~L~s~d~--------n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvN  199 (885)
T KOG2023|consen  128 ELLPQLCELLDSPDY--------NTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVN  199 (885)
T ss_pred             hHHHHHHHHhcCCcc--------cccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhh
Confidence            468999999998876        66788999999999876654322111    234788999999999999999999999


Q ss_pred             HhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHH--HcCCHHHHHHHhcCCChhHHHH
Q 005282          219 TLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVI--LAGALQPVIGLLSSSCSESKRE  296 (704)
Q Consensus       219 ~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~--~~~~l~~L~~ll~~~~~~~~~~  296 (704)
                      ......... -...-...+..+..+-++.+++||+..|.++..+....++.   +.  -.++++.++..-++.+.++..+
T Consensus       200 q~i~~~~qa-l~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dk---l~phl~~IveyML~~tqd~dE~VALE  275 (885)
T KOG2023|consen  200 QFIIIQTQA-LYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDK---LVPHLDNIVEYMLQRTQDVDENVALE  275 (885)
T ss_pred             heeecCcHH-HHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHh---cccchHHHHHHHHHHccCcchhHHHH
Confidence            887532221 11222235677777778999999999999999998654432   22  1356777777778888999999


Q ss_pred             HHHHHHHHhccCCcchHHHHh--cCChHHHHHhhCCCCH-----------------------------------------
Q 005282          297 AALLLGQFAAADSNSKVHIVQ--RGAVRPLIEMLQSPDS-----------------------------------------  333 (704)
Q Consensus       297 a~~~L~~l~~~~~~~~~~~~~--~~~i~~L~~ll~~~~~-----------------------------------------  333 (704)
                      |+.....++. .+..+..+..  ..++|.|+.-+..++.                                         
T Consensus       276 ACEFwla~ae-qpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eD  354 (885)
T KOG2023|consen  276 ACEFWLALAE-QPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDED  354 (885)
T ss_pred             HHHHHHHHhc-CcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccc
Confidence            9999888885 3444443332  2566666655432211                                         


Q ss_pred             ---------------HHHHHHHHHHHHhhcCCchhhhHHhhCChHH----HHHhhcCCChhHHHHHHHHHHHcccCCchh
Q 005282          334 ---------------QLKEMSAFALGRLAQDTHNQAGIAQDGGILP----LLKLLDSKNGSLQHNAAFALYGLADNEDNV  394 (704)
Q Consensus       334 ---------------~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~----L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~  394 (704)
                                     .+|+..+.+|.-|+.       +.....++.    |-+.|.+.+..+++.++.+|+.++.     
T Consensus       355 dddDe~DDdD~~~dWNLRkCSAAaLDVLan-------vf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAE-----  422 (885)
T KOG2023|consen  355 DDDDEDDDDDAFSDWNLRKCSAAALDVLAN-------VFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAE-----  422 (885)
T ss_pred             ccccccccccccccccHhhccHHHHHHHHH-------hhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHH-----
Confidence                           223323333332221       122222333    3344455677788888888887742     


Q ss_pred             hHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHHHHHHHHhccCCC---ccceee
Q 005282          395 ADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPD---DCKTIF  471 (704)
Q Consensus       395 ~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~---~~~~~l  471 (704)
                            |+.+.+..+                      .+.+++.++.++.++.+-||.-.||+|+.++..-   +..+.+
T Consensus       423 ------GcM~g~~p~----------------------LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f  474 (885)
T KOG2023|consen  423 ------GCMQGFVPH----------------------LPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYF  474 (885)
T ss_pred             ------HHhhhcccc----------------------hHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhh
Confidence                  332222211                      1237889999999999999999999999996532   211222


Q ss_pred             ecCCcHHHHHHHHhhcchhhhhhHHHHHHHHhhhc
Q 005282          472 IDNNGLELLLGLLESTSVKQREESSVALYKLATKA  506 (704)
Q Consensus       472 ~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~  506 (704)
                        ...+..|++.+-+++..||++|..+...+-.+.
T Consensus       475 --~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A  507 (885)
T KOG2023|consen  475 --KPVLEGLLRRLLDSNKKVQEAACSAFATLEEEA  507 (885)
T ss_pred             --HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhc
Confidence              134555666666799999999999999887755

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.23  E-value=6e-10  Score=116.64  Aligned_cols=245  Identities=19%  Similarity=0.236  Sum_probs=190.9

Q ss_pred             hHHHHHHHHHHHHHhh-c-ChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHHHH
Q 005282           64 DRAAAKTASHALVEFA-K-NEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQIIV  140 (704)
Q Consensus        64 ~~~~~~~a~~~L~~l~-~-~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~~  140 (704)
                      +...+.+++.-|..+- . +++....+--.-.+|.|+.+|+....         .++...|+++|.+++ .-|.-...++
T Consensus       181 Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n---------~DIMl~AcRaltyl~evlP~S~a~vV  251 (1051)
T KOG0168|consen  181 DESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHN---------FDIMLLACRALTYLCEVLPRSSAIVV  251 (1051)
T ss_pred             ChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhcccc---------HHHHHHHHHHHHHHHhhccchhheee
Confidence            3344566666555542 2 34433333334578999999999875         699999999999999 8899889999


Q ss_pred             HcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHh
Q 005282          141 DTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTL  220 (704)
Q Consensus       141 ~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l  220 (704)
                      +.++||.|+.-|..-..       .++.++++.+|-.++...+.   .+.+.|++...+.++.--+..+++.|+.+..|+
T Consensus       252 ~~~aIPvl~~kL~~Iey-------iDvAEQ~LqALE~iSR~H~~---AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~  321 (1051)
T KOG0168|consen  252 DEHAIPVLLEKLLTIEY-------IDVAEQSLQALEKISRRHPK---AILQAGALSAVLSYLDFFSIHAQRVALAIAANC  321 (1051)
T ss_pred             cccchHHHHHhhhhhhh-------hHHHHHHHHHHHHHHhhccH---HHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999988876553       49999999999999975553   488899999999999988889999999999999


Q ss_pred             ccCCc-hhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcC---ChhhHHHHHHcCCHHHHHHHhcCCC----hh
Q 005282          221 AFKND-ENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHS---SPSIKKEVILAGALQPVIGLLSSSC----SE  292 (704)
Q Consensus       221 ~~~~~-~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~---~~~~~~~~~~~~~l~~L~~ll~~~~----~~  292 (704)
                      |..-+ +.-..+++  .+|.|..+|...|....+.++-++..++..   .++..+.+...|.+.....++.-..    ..
T Consensus       322 Cksi~sd~f~~v~e--alPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~  399 (1051)
T KOG0168|consen  322 CKSIRSDEFHFVME--ALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNG  399 (1051)
T ss_pred             HhcCCCccchHHHH--HHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCccccccc
Confidence            97322 22333334  599999999999999999999999988843   4566777888999999999886542    23


Q ss_pred             HHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhC
Q 005282          293 SKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQ  329 (704)
Q Consensus       293 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~  329 (704)
                      +....++.|..++++.+.....+.+.++...|..+|.
T Consensus       400 ~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~  436 (1051)
T KOG0168|consen  400 TYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQ  436 (1051)
T ss_pred             chhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHh
Confidence            4556677888888877888888888888888887775

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.21  E-value=2.4e-09  Score=103.18  Aligned_cols=194  Identities=20%  Similarity=0.231  Sum_probs=169.1

Q ss_pred             hhccCCchhhHHHHHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CCh
Q 005282           55 NSKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKP  133 (704)
Q Consensus        55 ~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~  133 (704)
                      ...+...+.+...+..|+.-|..+..+-++...++..|++..++.++++.+.          .+|..|+++|+.++ ++|
T Consensus        87 ~~~~~~~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~----------~lR~~Aa~Vigt~~qNNP  156 (342)
T KOG2160|consen   87 IVILNSSSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDA----------ELRELAARVIGTAVQNNP  156 (342)
T ss_pred             hhccCcccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcH----------HHHHHHHHHHHHHHhcCH
Confidence            3444556677777888999999999988999999999999999999999876          99999999999999 999


Q ss_pred             hhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcC--CCHHHHH
Q 005282          134 EHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKF--VDVKVQR  211 (704)
Q Consensus       134 ~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~~~~  211 (704)
                      ..+..+++.|+++.|+..+.+..+       ..++..|+.+++.+...++.....+...++...|...+++  .+..++.
T Consensus       157 ~~Qe~v~E~~~L~~Ll~~ls~~~~-------~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkr  229 (342)
T KOG2160|consen  157 KSQEQVIELGALSKLLKILSSDDP-------NTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKR  229 (342)
T ss_pred             HHHHHHHHcccHHHHHHHHccCCC-------chHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHH
Confidence            999999999999999999996654       2888999999999999999999999999999999999998  6778889


Q ss_pred             HHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcC
Q 005282          212 AAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHS  265 (704)
Q Consensus       212 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~  265 (704)
                      .++..+..+..........+...+....+..+..+.+.++.+.++.++..+...
T Consensus       230 K~~~Ll~~Ll~~~~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~  283 (342)
T KOG2160|consen  230 KALFLLSLLLQEDKSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLLSE  283 (342)
T ss_pred             HHHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHHH
Confidence            999999999986666667666677777777888888889999998888777643

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=99.16  E-value=8.9e-09  Score=105.71  Aligned_cols=152  Identities=16%  Similarity=0.143  Sum_probs=120.4

Q ss_pred             HHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhh
Q 005282          249 ASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEML  328 (704)
Q Consensus       249 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll  328 (704)
                      ..++..++-++.+++..-...+.-+....+..+|+.++..++..+...+..+|.|+.....+.+..++..|+++.+.+++
T Consensus       391 ~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~  470 (678)
T KOG1293|consen  391 HDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESML  470 (678)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHh
Confidence            45566666666666644333333333467889999999999999999999999999998889999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHhhcCCchhhhHH--hhCChHHHHHhhcCCChhHHHHHHHHHHHcccC-CchhhHHHhh
Q 005282          329 QSPDSQLKEMSAFALGRLAQDTHNQAGIA--QDGGILPLLKLLDSKNGSLQHNAAFALYGLADN-EDNVADLVRV  400 (704)
Q Consensus       329 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~--~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~l~~~  400 (704)
                      .+.++.++..+.|+|.++..+.+...+..  ..-+...+..+.+++++.||+.+...|+|+.++ .+....+++.
T Consensus       471 ~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~svdfll~~  545 (678)
T KOG1293|consen  471 TDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKSVDFLLEK  545 (678)
T ss_pred             cCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHHHHHHHHh
Confidence            99999999999999999999877655432  223334467778999999999999999999975 4555655553

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=99.10  E-value=2.4e-09  Score=104.81  Aligned_cols=305  Identities=18%  Similarity=0.179  Sum_probs=217.1

Q ss_pred             HHhHhcCChHHHHHhhcCCCH--HHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcC-CChhHHHHHHHHHHHHh
Q 005282          229 KLIVECNALPTLVLMLRSEDA--SVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSS-SCSESKREAALLLGQFA  305 (704)
Q Consensus       229 ~~~~~~~~i~~L~~lL~~~~~--~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~~~~~a~~~L~~l~  305 (704)
                      ..+...|++..|++++..++.  .++..+.+.|..+..  .+++..+...| +..++.+.+. ...+..+..+..|.++-
T Consensus       174 D~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mF  250 (832)
T KOG3678|consen  174 DAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMF  250 (832)
T ss_pred             hHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHh
Confidence            345567899999999998765  569999999998874  34566666666 5666655543 34667889999999999


Q ss_pred             ccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcC--CchhhhHHhhCChHHHHHhhcCCChhHHHHHHHH
Q 005282          306 AADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQD--THNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFA  383 (704)
Q Consensus       306 ~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~  383 (704)
                      .++++....++..|+++.++-..+..++.+..+++.+|+|++.+  ...+..+++..+.+.|..+-.+.+.-++..||.+
T Consensus       251 KHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClA  330 (832)
T KOG3678|consen  251 KHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLA  330 (832)
T ss_pred             hhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHH
Confidence            98889999999999999999999999999999999999999965  4567789988888888888888888899999999


Q ss_pred             HHHcccCCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHh----hcchhHHHHHHHhhccHHHHHHHHHHHH
Q 005282          384 LYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKV----HGRVLNHLLYLLRVADRAVKRRVTLALA  459 (704)
Q Consensus       384 L~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~L~~ll~~~~~~v~~~a~~~L~  459 (704)
                      .+.++.+.+.-+.+-+.|-+...-....+..+.      .+..-....    ..+-++.|+.++.+..-+.+.-++.-++
T Consensus       331 V~vlat~KE~E~~VrkS~TlaLVEPlva~~DP~------~FARD~hd~aQG~~~d~LqRLvPlLdS~R~EAq~i~AF~l~  404 (832)
T KOG3678|consen  331 VAVLATNKEVEREVRKSGTLALVEPLVASLDPG------RFARDAHDYAQGRGPDDLQRLVPLLDSNRLEAQCIGAFYLC  404 (832)
T ss_pred             HhhhhhhhhhhHHHhhccchhhhhhhhhccCcc------hhhhhhhhhhccCChHHHHHhhhhhhcchhhhhhhHHHHHH
Confidence            999999988888888877654332212222221      111111111    2245677888887665554444443333


Q ss_pred             hcc---CCCccceeeecCCcHHHHHHHHhhcchhhhhhHHHHHHHHhhhcC-CCCCCCCCCCCCchhhchH--------H
Q 005282          460 HLC---APDDCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLATKAT-SLSPMDAAPPSPTQQVYLG--------E  527 (704)
Q Consensus       460 ~l~---~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~-~~~~~~~~~~~~~~~~~l~--------~  527 (704)
                      .=+   .....-..|.+.|+|+.|.++..+.+......|..+|.-+....+ .+-+-.+.|...+.+.|..        +
T Consensus       405 ~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGEEVP~~l~~qVPgWt~AdVQ~WvkkIGFeeY~E  484 (832)
T KOG3678|consen  405 AEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGEEVPYKLAQQVPGWTCADVQYWVKKIGFEEYVE  484 (832)
T ss_pred             HHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhccccChhhhccCCCcchHHHHHHHHHhCHHHHHH
Confidence            221   122333567788999999999998888888899999999998886 3333344555555555543        3


Q ss_pred             hhhcCCCcccEEEEE
Q 005282          528 QFVNNPTLSDVTFVV  542 (704)
Q Consensus       528 ~~~~~~~~~d~~~~~  542 (704)
                      .|..+..-.|..+.+
T Consensus       485 kFakQ~VDGDLLLqL  499 (832)
T KOG3678|consen  485 KFAKQMVDGDLLLQL  499 (832)
T ss_pred             HHHHHhccchHHHhh
Confidence            455554445555444

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.10  E-value=4.2e-08  Score=102.24  Aligned_cols=427  Identities=13%  Similarity=0.102  Sum_probs=246.5

Q ss_pred             CchhhHHHHHHHHHHHHHhhc-ChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcC-ChhhHH
Q 005282           60 SDETDRAAAKTASHALVEFAK-NEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAV-KPEHQQ  137 (704)
Q Consensus        60 ~~~~~~~~~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~-~~~~~~  137 (704)
                      .++++..++..|+.+|..+.. .-+.-...........-+..+++++.          +|..+++...+++|. .-+...
T Consensus       226 tq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~d----------eValQaiEFWsticeEEiD~~~  295 (859)
T KOG1241|consen  226 TQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDND----------EVALQAIEFWSTICEEEIDLAI  295 (859)
T ss_pred             ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcH----------HHHHHHHHHHHHHHHHHHHHHH
Confidence            345666788899999988876 34444444455566777777887765          999999999999992 222110


Q ss_pred             ---HHH---------------HcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHH
Q 005282          138 ---IIV---------------DTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLV  199 (704)
Q Consensus       138 ---~~~---------------~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~  199 (704)
                         ...               -.+++|.|+++|.+.+++.. +++|..-..|..+|.-++...   ++.++. .++|.+-
T Consensus       296 e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d-~DdWnp~kAAg~CL~l~A~~~---~D~Iv~-~Vl~Fie  370 (859)
T KOG1241|consen  296 EYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDD-DDDWNPAKAAGVCLMLFAQCV---GDDIVP-HVLPFIE  370 (859)
T ss_pred             HHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcc-cccCcHHHHHHHHHHHHHHHh---cccchh-hhHHHHH
Confidence               111               12578889999988655433 335778777777777666421   111221 3344444


Q ss_pred             HHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHH-HHHcCC
Q 005282          200 ELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKE-VILAGA  278 (704)
Q Consensus       200 ~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~-~~~~~~  278 (704)
                      +-++++|..-+..+..+++.+-.+....+..-...+++|.++.++.++.-.++..+.|+++.++...++.... ....+.
T Consensus       371 e~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~  450 (859)
T KOG1241|consen  371 ENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSK  450 (859)
T ss_pred             HhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHH
Confidence            5566899999999999999999877777777778889999999999888899999999999999776543221 112344


Q ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHHhccCC----cc-hHHHHh---cCChHHHHHhhCC---CCHHHHHHHHHHHHHhh
Q 005282          279 LQPVIGLLSSSCSESKREAALLLGQFAAADS----NS-KVHIVQ---RGAVRPLIEMLQS---PDSQLKEMSAFALGRLA  347 (704)
Q Consensus       279 l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~----~~-~~~~~~---~~~i~~L~~ll~~---~~~~v~~~a~~~L~~l~  347 (704)
                      ++.++.-|.+ .+.+..+++|++.+++....    .+ ......   ..++..|++.-.-   ....+|..|..+|..+.
T Consensus       451 l~~l~~gL~D-ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElI  529 (859)
T KOG1241|consen  451 LSALLEGLND-EPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELI  529 (859)
T ss_pred             HHHHHHHhhh-CchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHH
Confidence            5555555544 48899999999999983211    11 000111   1123333333322   34678899999999988


Q ss_pred             cCCchhhhHHhhCChHHHHH----hhc-----C-------CChhHHHHHHH-HHHHcccC-CchhhHHHhhCCccccccc
Q 005282          348 QDTHNQAGIAQDGGILPLLK----LLD-----S-------KNGSLQHNAAF-ALYGLADN-EDNVADLVRVGGVQKLQDG  409 (704)
Q Consensus       348 ~~~~~~~~~~~~~~~~~L~~----ll~-----~-------~~~~v~~~a~~-~L~~l~~~-~~~~~~l~~~g~i~~l~~~  409 (704)
                      .+...-..-.-.+....++.    .++     .       .=..+..+.+. +++.+..+ ++....+.. ..+..+-..
T Consensus       530 k~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~-lflri~~s~  608 (859)
T KOG1241|consen  530 KNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMG-LFLRIFESK  608 (859)
T ss_pred             HcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHH-HHHHHHcCC
Confidence            76543221111111111111    111     0       01223333333 22333221 111111111 111111110


Q ss_pred             ccc-ccc----chHHHHHHHHHHHHHhhcchhHHHHHHH-hhccHHHHHHHHHHHHhccCCCccceeeecCCcHHHHHHH
Q 005282          410 EFT-VQP----TKDCVARTLKRLEEKVHGRVLNHLLYLL-RVADRAVKRRVTLALAHLCAPDDCKTIFIDNNGLELLLGL  483 (704)
Q Consensus       410 ~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~l  483 (704)
                      ... ++.    ..-++...+...-.++...+.|.|..-+ ...+-.|...|.+.++.|++.-+........+.+..|++.
T Consensus       609 ~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~  688 (859)
T KOG1241|consen  609 RSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQC  688 (859)
T ss_pred             ccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence            000 000    0112333444444445556777888777 5566788888888899997755444444445667778888


Q ss_pred             Hhhc--chhhhhhHHHHHHHHh
Q 005282          484 LEST--SVKQREESSVALYKLA  503 (704)
Q Consensus       484 l~~~--~~~~~~~a~~~L~~L~  503 (704)
                      |+++  +..++-....+...++
T Consensus       689 Lss~~~hR~vKP~IlS~FgDIA  710 (859)
T KOG1241|consen  689 LSSPNLHRNVKPAILSVFGDIA  710 (859)
T ss_pred             ccCccccccccchHHHHHHHHH
Confidence            8763  3334444444444443

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.03  E-value=2.3e-08  Score=96.51  Aligned_cols=184  Identities=18%  Similarity=0.144  Sum_probs=163.2

Q ss_pred             chHHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCC
Q 005282          115 EHEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDG  194 (704)
Q Consensus       115 d~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~  194 (704)
                      +.+-+..|..-|..++.+-++...++..|++..++..+.+.+.        ++|+.|++.++..+..+|..+..+.+.|+
T Consensus        96 ~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~--------~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~  167 (342)
T KOG2160|consen   96 DLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDA--------ELRELAARVIGTAVQNNPKSQEQVIELGA  167 (342)
T ss_pred             CHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcH--------HHHHHHHHHHHHHHhcCHHHHHHHHHccc
Confidence            5688999999999999888999999999999999998888876        99999999999999999999999999999


Q ss_pred             cHHHHHHhcCC-CHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcC--CCHHHHHHHHHHHHHHhcCChhhHH
Q 005282          195 IPPLVELLKFV-DVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRS--EDASVHFEAVGVIGNLVHSSPSIKK  271 (704)
Q Consensus       195 i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~  271 (704)
                      ++.|+..+.++ +..++..|+.+++.+..+++.....+...++...|...+.+  .+...++.++..+..+.........
T Consensus       168 L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d  247 (342)
T KOG2160|consen  168 LSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDED  247 (342)
T ss_pred             HHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhh
Confidence            99999999954 45777999999999999999999999999999999999998  6788899999999999988766666


Q ss_pred             HHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhc
Q 005282          272 EVILAGALQPVIGLLSSSCSESKREAALLLGQFAA  306 (704)
Q Consensus       272 ~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~  306 (704)
                      .+...++...+..+....+.++...+..++..+..
T Consensus       248 ~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~  282 (342)
T KOG2160|consen  248 IASSLGFQRVLENLISSLDFEVNEAALTALLSLLS  282 (342)
T ss_pred             HHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence            55567777778888888888888888887776654

>PTZ00429 beta-adaptin; Provisional

Probab=99.02  E-value=4.1e-07  Score=100.09  Aligned_cols=379  Identities=16%  Similarity=0.114  Sum_probs=232.4

Q ss_pred             HHHHHHHHHH-HhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHHHHHcCC
Q 005282           67 AAKTASHALV-EFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQIIVDTGA  144 (704)
Q Consensus        67 ~~~~a~~~L~-~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~~~~g~  144 (704)
                      .+.++++.+. .++.+.+...      +.+.++.++.+.+.          +++.-..-.+.+++ .+|+..-.     +
T Consensus        48 ~kk~alKkvIa~mt~G~DvS~------LF~dVvk~~~S~d~----------elKKLvYLYL~~ya~~~pelalL-----a  106 (746)
T PTZ00429         48 RKKAAVKRIIANMTMGRDVSY------LFVDVVKLAPSTDL----------ELKKLVYLYVLSTARLQPEKALL-----A  106 (746)
T ss_pred             HHHHHHHHHHHHHHCCCCchH------HHHHHHHHhCCCCH----------HHHHHHHHHHHHHcccChHHHHH-----H
Confidence            4566665444 4445554433      35777888887754          89998888898998 56654322     2


Q ss_pred             cHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCC
Q 005282          145 LPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKN  224 (704)
Q Consensus       145 l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~  224 (704)
                      +..+.+-+.++++        .++..|+.+|+++-.  +..-     .-.++.+.+.+.+.++.||+.|+.++..+-..+
T Consensus       107 INtl~KDl~d~Np--------~IRaLALRtLs~Ir~--~~i~-----e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~  171 (746)
T PTZ00429        107 VNTFLQDTTNSSP--------VVRALAVRTMMCIRV--SSVL-----EYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDD  171 (746)
T ss_pred             HHHHHHHcCCCCH--------HHHHHHHHHHHcCCc--HHHH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC
Confidence            3555555554443        888899998888763  2221     234566788888999999999999999997644


Q ss_pred             chhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHH
Q 005282          225 DENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQF  304 (704)
Q Consensus       225 ~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l  304 (704)
                      ++   .+.+.+.++.|.++|.+.++.|...|+.+|..+...++..  .-...+.+..++..+.+.++..+...+.+|...
T Consensus       172 pe---lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~--l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y  246 (746)
T PTZ00429        172 MQ---LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEK--IESSNEWVNRLVYHLPECNEWGQLYILELLAAQ  246 (746)
T ss_pred             cc---cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchh--hHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc
Confidence            42   3446678899999999999999999999999998665432  122345567777777777777777777777553


Q ss_pred             hccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCc-hhhhHHhhCChHHHHHhhcCCChhHHHHHHHH
Q 005282          305 AAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTH-NQAGIAQDGGILPLLKLLDSKNGSLQHNAAFA  383 (704)
Q Consensus       305 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~  383 (704)
                      .   +......  ..++..+...+++.++.|.-.|+.++.++..... ......-.....+++.+ .+++++++..++..
T Consensus       247 ~---P~~~~e~--~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L-~ss~~eiqyvaLr~  320 (746)
T PTZ00429        247 R---PSDKESA--ETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTL-SRRDAETQYIVCKN  320 (746)
T ss_pred             C---CCCcHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHh-hCCCccHHHHHHHH
Confidence            2   2222111  3567888888999999999999999999986532 11111111122456666 45788999999988


Q ss_pred             HHHcccCCchhhHHHhhCCcccc----cccccccccchHHHHHHHHHHH-HHhhcchhHHHHHHHhhccHHHHHHHHHHH
Q 005282          384 LYGLADNEDNVADLVRVGGVQKL----QDGEFTVQPTKDCVARTLKRLE-EKVHGRVLNHLLYLLRVADRAVKRRVTLAL  458 (704)
Q Consensus       384 L~~l~~~~~~~~~l~~~g~i~~l----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L  458 (704)
                      +..+....   +.+.... +..+    -+..+.    +.-....+..+. +.....++..|.....+.+.+++..+..+|
T Consensus       321 I~~i~~~~---P~lf~~~-~~~Ff~~~~Dp~yI----K~~KLeIL~~Lane~Nv~~IL~EL~eYa~d~D~ef~r~aIrAI  392 (746)
T PTZ00429        321 IHALLVIF---PNLLRTN-LDSFYVRYSDPPFV----KLEKLRLLLKLVTPSVAPEILKELAEYASGVDMVFVVEVVRAI  392 (746)
T ss_pred             HHHHHHHC---HHHHHHH-HHhhhcccCCcHHH----HHHHHHHHHHHcCcccHHHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence            87776522   1222211 1111    000000    000001111111 111233555666666666777777777777


Q ss_pred             HhccCCCccceeeecCCcHHHHHHHHhhcchhhhhhHHHHHHHHhhh
Q 005282          459 AHLCAPDDCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLATK  505 (704)
Q Consensus       459 ~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~  505 (704)
                      +.++..-+.    .....+..|++++..+.. +...++.++.++.++
T Consensus       393 g~lA~k~~~----~a~~cV~~Ll~ll~~~~~-~v~e~i~vik~Ilrk  434 (746)
T PTZ00429        393 ASLAIKVDS----VAPDCANLLLQIVDRRPE-LLPQVVTAAKDIVRK  434 (746)
T ss_pred             HHHHHhChH----HHHHHHHHHHHHhcCCch-hHHHHHHHHHHHHHH
Confidence            777542111    112456666676654333 333566666666554

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.02  E-value=9.6e-08  Score=100.58  Aligned_cols=256  Identities=18%  Similarity=0.141  Sum_probs=197.8

Q ss_pred             hHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc--CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHH
Q 005282           94 VPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA--VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRA  171 (704)
Q Consensus        94 i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~--~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a  171 (704)
                      +..|++-|+...         |+..+.+|+.-|+.+.  ++++....+--.-.+|.|+.+|+...+       .+++..|
T Consensus       169 ~kkLL~gL~~~~---------Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n-------~DIMl~A  232 (1051)
T KOG0168|consen  169 AKKLLQGLQAES---------DESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHN-------FDIMLLA  232 (1051)
T ss_pred             HHHHHHhccccC---------ChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhcccc-------HHHHHHH
Confidence            466666676664         3467777777777666  676666555556689999999998776       3999999


Q ss_pred             HHHHHHhhhcChhhhhhhhccCCcHHHHHHhc-CCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHH
Q 005282          172 ADAITNLAHENANIKTRVRVEDGIPPLVELLK-FVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDAS  250 (704)
Q Consensus       172 ~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~  250 (704)
                      +.+|.++|.--|+-...+++.+.||.|+.-|. -...++.+.++.+|-.+++.   .-..+.+.|++...+.+|.--...
T Consensus       233 cRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~---H~~AiL~AG~l~a~LsylDFFSi~  309 (1051)
T KOG0168|consen  233 CRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRR---HPKAILQAGALSAVLSYLDFFSIH  309 (1051)
T ss_pred             HHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhh---ccHHHHhcccHHHHHHHHHHHHHH
Confidence            99999999888888889999999999986655 67789999999999999963   334567889999999998877889


Q ss_pred             HHHHHHHHHHHHhcCC-hhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhc---cCCcchHHHHhcCChHHHHH
Q 005282          251 VHFEAVGVIGNLVHSS-PSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAA---ADSNSKVHIVQRGAVRPLIE  326 (704)
Q Consensus       251 v~~~a~~~L~~l~~~~-~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~---~~~~~~~~~~~~~~i~~L~~  326 (704)
                      +++.|+.+..|+|..- ++....++  ..+|.|..+|+..+....+.++.++..++.   ++++..+.+...|++.....
T Consensus       310 aQR~AlaiaaN~Cksi~sd~f~~v~--ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~q  387 (1051)
T KOG0168|consen  310 AQRVALAIAANCCKSIRSDEFHFVM--EALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQ  387 (1051)
T ss_pred             HHHHHHHHHHHHHhcCCCccchHHH--HHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHH
Confidence            9999999999999642 22222233  469999999999988888888888888763   34566677888899999888


Q ss_pred             hhCCCC----HHHHHHHHHHHHHhhcC-CchhhhHHhhCChHHHHHhhc
Q 005282          327 MLQSPD----SQLKEMSAFALGRLAQD-THNQAGIAQDGGILPLLKLLD  370 (704)
Q Consensus       327 ll~~~~----~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~~~L~~ll~  370 (704)
                      ++.-.+    ..+......+|.-++.+ +-....+...++...+..+|.
T Consensus       388 Llsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~  436 (1051)
T KOG0168|consen  388 LLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQ  436 (1051)
T ss_pred             HHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHh
Confidence            886432    34566778888888887 444566677777777777763

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=99.00  E-value=2.8e-08  Score=97.52  Aligned_cols=277  Identities=21%  Similarity=0.224  Sum_probs=204.5

Q ss_pred             hHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCc
Q 005282           83 EIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSR  162 (704)
Q Consensus        83 ~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~  162 (704)
                      ..++.+...|++..|+.+++.++.        +..++.+|.+.|-.+... ++++.+...| +..++.+-+....     
T Consensus       171 ~LCD~iR~~~~lD~Llrmf~aPn~--------et~vRve~~rlLEq~~~a-eN~d~va~~~-~~~Il~lAK~~e~-----  235 (832)
T KOG3678|consen  171 GLCDAIRLDGGLDLLLRMFQAPNL--------ETSVRVEAARLLEQILVA-ENRDRVARIG-LGVILNLAKEREP-----  235 (832)
T ss_pred             hhhhHhhccchHHHHHHHHhCCch--------hHHHHHHHHHHHHHHHhh-hhhhHHhhcc-chhhhhhhhhcCc-----
Confidence            455777788999999999999987        567899999999998833 5677777776 6666666654433     


Q ss_pred             chhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhcc-CCchhhHHhHhcCChHHHH
Q 005282          163 ALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAF-KNDENKKLIVECNALPTLV  241 (704)
Q Consensus       163 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~~~~i~~L~  241 (704)
                        +++.+..+.+|.++..++++....++..|++..++-.++..+|.+.+++.-+|.|++. +....+..+++..+-+.|.
T Consensus       236 --~e~aR~~~~il~~mFKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF  313 (832)
T KOG3678|consen  236 --VELARSVAGILEHMFKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLF  313 (832)
T ss_pred             --HHHHHHHHHHHHHHhhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhh
Confidence              4899999999999999999999999999999999999999999999999999999975 3456777888888888888


Q ss_pred             HhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCCh
Q 005282          242 LMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAV  321 (704)
Q Consensus       242 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i  321 (704)
                      .+..+.|+-.+..||-+++.++.. .+....+...|.+..+-.++.+-++..          ++....+..+ -....-+
T Consensus       314 ~LA~skDel~R~~AClAV~vlat~-KE~E~~VrkS~TlaLVEPlva~~DP~~----------FARD~hd~aQ-G~~~d~L  381 (832)
T KOG3678|consen  314 PLAFSKDELLRLHACLAVAVLATN-KEVEREVRKSGTLALVEPLVASLDPGR----------FARDAHDYAQ-GRGPDDL  381 (832)
T ss_pred             hhhcchHHHHHHHHHHHHhhhhhh-hhhhHHHhhccchhhhhhhhhccCcch----------hhhhhhhhhc-cCChHHH
Confidence            888888899999999999999865 566666777776665555555544432          1110000000 0012357


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhh--cCCchhhhH-HhhCChHHHHHhhcCCChhHHHHHHHHHHHcc
Q 005282          322 RPLIEMLQSPDSQLKEMSAFALGRLA--QDTHNQAGI-AQDGGILPLLKLLDSKNGSLQHNAAFALYGLA  388 (704)
Q Consensus       322 ~~L~~ll~~~~~~v~~~a~~~L~~l~--~~~~~~~~~-~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~  388 (704)
                      +.|+.+|.+..-+.+..++.-++.=+  ...+++..+ .+-|+++.|-++..+.+.--...|-.+|.-+.
T Consensus       382 qRLvPlLdS~R~EAq~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviG  451 (832)
T KOG3678|consen  382 QRLVPLLDSNRLEAQCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIG  451 (832)
T ss_pred             HHhhhhhhcchhhhhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhc
Confidence            88899998777777666555554433  233444444 44588999888888777766667777777664

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.00  E-value=3.3e-06  Score=88.76  Aligned_cols=316  Identities=16%  Similarity=0.196  Sum_probs=228.5

Q ss_pred             CchhhHHHHHHHHHHHHhhhccCCchhhHHHHHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCch
Q 005282           37 GATQQDLVQDIRAQIDILNSKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEH  116 (704)
Q Consensus        37 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~  116 (704)
                      +.+.+....-|+.+++.+-..     .-...++.|++.|..+++  .++..+ .+.++++|++.|+.+-.        |+
T Consensus        14 ~~k~~s~aETI~kLcDRvess-----TL~eDRR~A~rgLKa~sr--kYR~~V-ga~Gmk~li~vL~~D~~--------D~   77 (970)
T KOG0946|consen   14 PPKQQSAAETIEKLCDRVESS-----TLLEDRRDAVRGLKAFSR--KYREEV-GAQGMKPLIQVLQRDYM--------DP   77 (970)
T ss_pred             CCccccHHhHHHHHHHHHhhc-----cchhhHHHHHHHHHHHHH--HHHHHH-HHcccHHHHHHHhhccC--------CH
Confidence            344445556688888888552     334457888999988875  444443 56678999999999887        88


Q ss_pred             HHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcH
Q 005282          117 EVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIP  196 (704)
Q Consensus       117 ~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~  196 (704)
                      ++...++.++.++..+.+.          |.   .+.++.         ..-..+.|.--.+          +...+.|.
T Consensus        78 E~ik~~LdTl~il~~~dd~----------~~---v~dds~---------qsdd~g~~iae~f----------ik~qd~I~  125 (970)
T KOG0946|consen   78 EIIKYALDTLLILTSHDDS----------PE---VMDDST---------QSDDLGLWIAEQF----------IKNQDNIT  125 (970)
T ss_pred             HHHHHHHHHHHHHHhcCcc----------hh---hcccch---------hhhHHHHHHHHHH----------HcCchhHH
Confidence            9999999999998843330          00   011110         1111233322222          33356788


Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHhccCCc-hhhHHhH-hcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHH
Q 005282          197 PLVELLKFVDVKVQRAAAGALRTLAFKND-ENKKLIV-ECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVI  274 (704)
Q Consensus       197 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~-~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  274 (704)
                      .++..+...|-.+|..++..+.++....+ +.+..+. ..-+|..++.+|++..+.+|-.++..|..++.+++...+.+.
T Consensus       126 lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVA  205 (970)
T KOG0946|consen  126 LLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVA  205 (970)
T ss_pred             HHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHH
Confidence            89999999999999999999999865443 4555544 567899999999999999999999999999999998888888


Q ss_pred             HcCCHHHHHHHhcCC---Ch-hHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCC---CCH--------HH--HH
Q 005282          275 LAGALQPVIGLLSSS---CS-ESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQS---PDS--------QL--KE  337 (704)
Q Consensus       275 ~~~~l~~L~~ll~~~---~~-~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~---~~~--------~v--~~  337 (704)
                      -.+++..|..++...   +. -+...|+..|.|+...+..++..+.+.+.++.|.++|..   ++.        .+  ..
T Consensus       206 FENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~  285 (970)
T KOG0946|consen  206 FENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVI  285 (970)
T ss_pred             HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHH
Confidence            888999999999643   22 357889999999999889999999999999999988853   221        12  22


Q ss_pred             HHHHHHHHhhcCC-------chhhhHHhhCChHHHHHhhcCC--ChhHHHHHHHHHHHccc-CCchhhHHHhh
Q 005282          338 MSAFALGRLAQDT-------HNQAGIAQDGGILPLLKLLDSK--NGSLQHNAAFALYGLAD-NEDNVADLVRV  400 (704)
Q Consensus       338 ~a~~~L~~l~~~~-------~~~~~~~~~~~~~~L~~ll~~~--~~~v~~~a~~~L~~l~~-~~~~~~~l~~~  400 (704)
                      .++.++..+....       .++..+...+++..|+.++.+.  ..+++..+..++++..+ +..+...+...
T Consensus       286 ~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v  358 (970)
T KOG0946|consen  286 EALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGNARNQDEFADV  358 (970)
T ss_pred             HHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhc
Confidence            3455555555332       2345677889999999888664  45788899999999986 66667777664

>PTZ00429 beta-adaptin; Provisional

Probab=98.97  E-value=1e-06  Score=96.93  Aligned_cols=384  Identities=13%  Similarity=0.048  Sum_probs=229.7

Q ss_pred             HHHHHHHHHHHhhc-ChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHcCCc
Q 005282           67 AAKTASHALVEFAK-NEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGAL  145 (704)
Q Consensus        67 ~~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l  145 (704)
                      .++-..-.+.+.+. +|+..-..     +..+.+=+.++++          .+|..|+++++++-.. +..+.     .+
T Consensus        84 lKKLvYLYL~~ya~~~pelalLa-----INtl~KDl~d~Np----------~IRaLALRtLs~Ir~~-~i~e~-----l~  142 (746)
T PTZ00429         84 LKKLVYLYVLSTARLQPEKALLA-----VNTFLQDTTNSSP----------VVRALAVRTMMCIRVS-SVLEY-----TL  142 (746)
T ss_pred             HHHHHHHHHHHHcccChHHHHHH-----HHHHHHHcCCCCH----------HHHHHHHHHHHcCCcH-HHHHH-----HH
Confidence            34444444555554 34433222     5667766666654          8999999999887732 22222     23


Q ss_pred             HHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCc
Q 005282          146 PHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKND  225 (704)
Q Consensus       146 ~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~  225 (704)
                      +.+.+.+.+.+.        -|+..|+.++.++...+++   .+...+.++.|.+++.+.++.+..+|+.+|..+...++
T Consensus       143 ~~lkk~L~D~~p--------YVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~  211 (746)
T PTZ00429        143 EPLRRAVADPDP--------YVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGS  211 (746)
T ss_pred             HHHHHHhcCCCH--------HHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCc
Confidence            456666665543        9999999999999876654   34566888999999999999999999999999986444


Q ss_pred             hhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHh
Q 005282          226 ENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFA  305 (704)
Q Consensus       226 ~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~  305 (704)
                      ..-  -...+.+..++..+...++..+...+.+|......++   ..  ....+..+...|++.++.+.-.|+.++.++.
T Consensus       212 ~~l--~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~---~e--~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~  284 (746)
T PTZ00429        212 EKI--ESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDK---ES--AETLLTRVLPRMSHQNPAVVMGAIKVVANLA  284 (746)
T ss_pred             hhh--HHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCc---HH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc
Confidence            321  1233446667777777788888888888865432211   11  1346777888888999999999999999886


Q ss_pred             ccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHH
Q 005282          306 AADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALY  385 (704)
Q Consensus       306 ~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~  385 (704)
                      ...+.......-..+-.+++.+ .+++++++..++..|.-+....+   .+... -+..+.-... ....++...+.+|.
T Consensus       285 ~~~~~~~~~~~~~rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~P---~lf~~-~~~~Ff~~~~-Dp~yIK~~KLeIL~  358 (746)
T PTZ00429        285 SRCSQELIERCTVRVNTALLTL-SRRDAETQYIVCKNIHALLVIFP---NLLRT-NLDSFYVRYS-DPPFVKLEKLRLLL  358 (746)
T ss_pred             CcCCHHHHHHHHHHHHHHHHHh-hCCCccHHHHHHHHHHHHHHHCH---HHHHH-HHHhhhcccC-CcHHHHHHHHHHHH
Confidence            4321111111111233566666 45678899999888877776442   22222 1323222223 33458999999999


Q ss_pred             HcccCCchhhHHHhhCCcccccccccccc-cchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHHHHHHHHhccCC
Q 005282          386 GLADNEDNVADLVRVGGVQKLQDGEFTVQ-PTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAP  464 (704)
Q Consensus       386 ~l~~~~~~~~~l~~~g~i~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~  464 (704)
                      .++. ++|...++++ ..+...+...... ...+.+.....+. +......+..|+.+++.+.. +...++.++.++.+.
T Consensus       359 ~Lan-e~Nv~~IL~E-L~eYa~d~D~ef~r~aIrAIg~lA~k~-~~~a~~cV~~Ll~ll~~~~~-~v~e~i~vik~Ilrk  434 (746)
T PTZ00429        359 KLVT-PSVAPEILKE-LAEYASGVDMVFVVEVVRAIASLAIKV-DSVAPDCANLLLQIVDRRPE-LLPQVVTAAKDIVRK  434 (746)
T ss_pred             HHcC-cccHHHHHHH-HHHHhhcCCHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHhcCCch-hHHHHHHHHHHHHHH
Confidence            8874 4444444432 1111111100000 1111222222111 12244577788888876544 445677888888443


Q ss_pred             CccceeeecCCcHHHHHHHH--h-hcchhhhhhHHHHHHHHhhh
Q 005282          465 DDCKTIFIDNNGLELLLGLL--E-STSVKQREESSVALYKLATK  505 (704)
Q Consensus       465 ~~~~~~l~~~~~i~~L~~ll--~-~~~~~~~~~a~~~L~~L~~~  505 (704)
                      ....      ..+..|+..+  . -.+++.+...+|.|+..+..
T Consensus       435 yP~~------~il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~  472 (746)
T PTZ00429        435 YPEL------LMLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDF  472 (746)
T ss_pred             CccH------HHHHHHHHhhcccccccHHHHHHHHHHHHhhHhh
Confidence            2221      1345555433  1 25667777778888877653

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.95  E-value=2.9e-07  Score=90.15  Aligned_cols=276  Identities=16%  Similarity=0.230  Sum_probs=193.4

Q ss_pred             ChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHHHHHcC-CcHHHHHHHhhccCCCCCcchhHHHHH
Q 005282           93 AVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQIIVDTG-ALPHLVSLLKQYKNGGNSRALSGVIRR  170 (704)
Q Consensus        93 ~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~~~~g-~l~~L~~lL~~~~~~~~~~~~~~~~~~  170 (704)
                      .-+..+.+|.+.+.          .+...+.++++.++ .++.... ..+.. ....|...+.+..++       +.+..
T Consensus       115 ~~~~fl~ll~r~d~----------~iv~~~~~Ils~la~~g~~~~~-~~e~~~~~~~l~~~l~~~~~~-------~~~~~  176 (442)
T KOG2759|consen  115 EWLSFLNLLNRQDT----------FIVEMSFRILSKLACFGNCKME-LSELDVYKGFLKEQLQSSTNN-------DYIQF  176 (442)
T ss_pred             chHHHHHHHhcCCh----------HHHHHHHHHHHHHHHhcccccc-chHHHHHHHHHHHHHhccCCC-------chHHH
Confidence            35677888888876          77777999999999 3322111 00000 123344444443321       67778


Q ss_pred             HHHHHHHhhhcChhhhhhhhccCCcHHHHHHhc--CCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcC-C
Q 005282          171 AADAITNLAHENANIKTRVRVEDGIPPLVELLK--FVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRS-E  247 (704)
Q Consensus       171 a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~-~  247 (704)
                      +..+|..+.. -++.|..++..+++..++..+.  ..+-.++...+.++|.|+. ++...+.+...+.++.|.+++++ .
T Consensus       177 ~~rcLQ~ll~-~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtF-n~~~ae~~~~~~li~~L~~Ivk~~~  254 (442)
T KOG2759|consen  177 AARCLQTLLR-VDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTF-NPHAAEKLKRFDLIQDLSDIVKEST  254 (442)
T ss_pred             HHHHHHHHhc-CcchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhc-CHHHHHHHhhccHHHHHHHHHHHHH
Confidence            8889988886 5677888999999999999984  4567899999999999997 77777888888999999999985 5


Q ss_pred             CHHHHHHHHHHHHHHhcCCh------hhHHHHHHcCCHHHHHHHhcC--CChhHHHHHHHH-------HHHHhcc-----
Q 005282          248 DASVHFEAVGVIGNLVHSSP------SIKKEVILAGALQPVIGLLSS--SCSESKREAALL-------LGQFAAA-----  307 (704)
Q Consensus       248 ~~~v~~~a~~~L~~l~~~~~------~~~~~~~~~~~l~~L~~ll~~--~~~~~~~~a~~~-------L~~l~~~-----  307 (704)
                      .+.|.+-++.++.|+....+      .....++..++.+.+-.+-..  .++++....-..       ...+++.     
T Consensus       255 KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~s  334 (442)
T KOG2759|consen  255 KEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKS  334 (442)
T ss_pred             HHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHH
Confidence            67899999999999997764      233444455555544444432  233332221111       1111111     


Q ss_pred             ---------C---------CcchHHHHhc--CChHHHHHhhCC-CCHHHHHHHHHHHHHhhcC-CchhhhHHhhCChHHH
Q 005282          308 ---------D---------SNSKVHIVQR--GAVRPLIEMLQS-PDSQLKEMSAFALGRLAQD-THNQAGIAQDGGILPL  365 (704)
Q Consensus       308 ---------~---------~~~~~~~~~~--~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~~~L  365 (704)
                               +         .++...+.+.  .++..|+++|+. .|+.+...||.=++...++ +.++..+.+.||-+.+
T Consensus       335 El~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~v  414 (442)
T KOG2759|consen  335 ELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERV  414 (442)
T ss_pred             HHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHH
Confidence                     1         1233334443  578999999975 5688888999999999965 6666777778999999


Q ss_pred             HHhhcCCChhHHHHHHHHHHHcc
Q 005282          366 LKLLDSKNGSLQHNAAFALYGLA  388 (704)
Q Consensus       366 ~~ll~~~~~~v~~~a~~~L~~l~  388 (704)
                      ++++++.|++|+.+|+.|+..+.
T Consensus       415 M~Llnh~d~~Vry~ALlavQ~lm  437 (442)
T KOG2759|consen  415 MNLLNHEDPEVRYHALLAVQKLM  437 (442)
T ss_pred             HHHhcCCCchHHHHHHHHHHHHH
Confidence            99999999999999999988764

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.95  E-value=1.1e-06  Score=92.72  Aligned_cols=392  Identities=18%  Similarity=0.216  Sum_probs=248.5

Q ss_pred             chhhHHHHHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHHH
Q 005282           61 DETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQII  139 (704)
Q Consensus        61 ~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~  139 (704)
                      ++.++.+.--|+-+|.+++.. +..+.+     .|.+-++++..++          .+|..|+-|...+- ..|+....+
T Consensus       117 ~s~nq~vVglAL~alg~i~s~-Emardl-----apeVe~Ll~~~~~----------~irKKA~Lca~r~irK~P~l~e~f  180 (866)
T KOG1062|consen  117 NSSNQYVVGLALCALGNICSP-EMARDL-----APEVERLLQHRDP----------YIRKKAALCAVRFIRKVPDLVEHF  180 (866)
T ss_pred             cCCCeeehHHHHHHhhccCCH-HHhHHh-----hHHHHHHHhCCCH----------HHHHHHHHHHHHHHHcCchHHHHh
Confidence            456677778888888887763 433433     5888888888765          89999999999999 888876554


Q ss_pred             HHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhc---------------C
Q 005282          140 VDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLK---------------F  204 (704)
Q Consensus       140 ~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~---------------~  204 (704)
                      +     +...++|.+.+.        .+...++..+..+|..+++.-..+.+  .++.++..|+               -
T Consensus       181 ~-----~~~~~lL~ek~h--------GVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi  245 (866)
T KOG1062|consen  181 V-----IAFRKLLCEKHH--------GVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGI  245 (866)
T ss_pred             h-----HHHHHHHhhcCC--------ceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCC
Confidence            4     667777777665        78888888888888777665544443  5666666665               1


Q ss_pred             CCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCC------HHHHHHHHHHHHHHhcCChhhHHHHHHcCC
Q 005282          205 VDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSED------ASVHFEAVGVIGNLVHSSPSIKKEVILAGA  278 (704)
Q Consensus       205 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~  278 (704)
                      ++|-++...++.|+-|..++++..+.+.+     .|-+.....+      -.+...++.++..|-.. ...+.     -+
T Consensus       246 ~dPFLQi~iLrlLriLGq~d~daSd~M~D-----iLaqvatntdsskN~GnAILYE~V~TI~~I~~~-~~Lrv-----la  314 (866)
T KOG1062|consen  246 SDPFLQIRILRLLRILGQNDADASDLMND-----ILAQVATNTDSSKNAGNAILYECVRTIMDIRSN-SGLRV-----LA  314 (866)
T ss_pred             CchHHHHHHHHHHHHhcCCCccHHHHHHH-----HHHHHHhcccccccchhHHHHHHHHHHHhccCC-chHHH-----HH
Confidence            37889999999999999876666665543     3444444221      35667777777776433 22221     23


Q ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHh
Q 005282          279 LQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQ  358 (704)
Q Consensus       279 l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  358 (704)
                      +..|-++|.+.+..++..|+..|......++...++-     =..++..|+++|..++..|++.+..|......+.    
T Consensus       315 iniLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrH-----r~tIleCL~DpD~SIkrralELs~~lvn~~Nv~~----  385 (866)
T KOG1062|consen  315 INILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRH-----RSTILECLKDPDVSIKRRALELSYALVNESNVRV----  385 (866)
T ss_pred             HHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHH-----HHHHHHHhcCCcHHHHHHHHHHHHHHhccccHHH----
Confidence            5667777777777788888888877765554432221     2467788899999999999998888876554332    


Q ss_pred             hCChHHHHHhhcCCChhHHHHHHHHHHHccc--CCchhhHHHhhCCcccccc-cccccccc----hHHHHHHHHHHHHHh
Q 005282          359 DGGILPLLKLLDSKNGSLQHNAAFALYGLAD--NEDNVADLVRVGGVQKLQD-GEFTVQPT----KDCVARTLKRLEEKV  431 (704)
Q Consensus       359 ~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~l~~~g~i~~l~~-~~~~~~~~----~~~~~~~~~~~~~~~  431 (704)
                        .+..|+..|.+.+++.+..++.-+..++.  .|++++.|-.-.  .+|.. +.+.....    .+-+++.+...+.-.
T Consensus       386 --mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~idtml--~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~  461 (866)
T KOG1062|consen  386 --MVKELLEFLESSDEDFKADIASKIAELAEKFAPDKRWHIDTML--KVLKTAGDFVNDDVVNNLLRLIANAFQELHEYA  461 (866)
T ss_pred             --HHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhHHHHHH--HHHHhcccccchhhHHHHHHHHhcCCcchhhHH
Confidence              33567888888899999999998888885  666665432210  00000 01111111    112222222222111


Q ss_pred             hcchhHHHHH--HHhhccHHHHHHHHHHHHhcc---CC---CccceeeecCCcHHHHHHHHhh--cchhhhhhHHHHHHH
Q 005282          432 HGRVLNHLLY--LLRVADRAVKRRVTLALAHLC---AP---DDCKTIFIDNNGLELLLGLLES--TSVKQREESSVALYK  501 (704)
Q Consensus       432 ~~~~~~~L~~--ll~~~~~~v~~~a~~~L~~l~---~~---~~~~~~l~~~~~i~~L~~ll~~--~~~~~~~~a~~~L~~  501 (704)
                      ...++..+..  ++.-.++.....|.|+|+...   -+   ++.-...-+...+..|.+++.+  .+..++..|..||..
T Consensus       462 ~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~K  541 (866)
T KOG1062|consen  462 VLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLK  541 (866)
T ss_pred             HHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence            1111111111  122344566888999998763   11   2222333456788999998875  557788888999988


Q ss_pred             HhhhcC
Q 005282          502 LATKAT  507 (704)
Q Consensus       502 L~~~~~  507 (704)
                      |+..-.
T Consensus       542 LSsr~~  547 (866)
T KOG1062|consen  542 LSSRFH  547 (866)
T ss_pred             HHhhcc
Confidence            876543

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.91  E-value=9.5e-07  Score=92.44  Aligned_cols=318  Identities=14%  Similarity=0.132  Sum_probs=209.1

Q ss_pred             HHHHHHhhhccCCchhhHHHHHHHHHHHHHhhcC--hhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHH
Q 005282           48 RAQIDILNSKFSSDETDRAAAKTASHALVEFAKN--EEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFA  125 (704)
Q Consensus        48 ~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~--~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~  125 (704)
                      |.++..++......... .++..++.+++-++.+  |+..... -..++..+++-.....+        +..+|..|..+
T Consensus       128 p~li~~lv~nv~~~~~~-~~k~~slealGyice~i~pevl~~~-sN~iLtaIv~gmrk~e~--------s~~vRLaa~~a  197 (859)
T KOG1241|consen  128 PELIVTLVSNVGEEQAS-MVKESSLEALGYICEDIDPEVLEQQ-SNDILTAIVQGMRKEET--------SAAVRLAALNA  197 (859)
T ss_pred             HHHHHHHHHhcccccch-HHHHHHHHHHHHHHccCCHHHHHHH-HhHHHHHHHhhccccCC--------chhHHHHHHHH
Confidence            55666666655433333 6788999999999884  5522221 23567777777777665        56899999999


Q ss_pred             HHhhc-CCh-hhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhc
Q 005282          126 LGLLA-VKP-EHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLK  203 (704)
Q Consensus       126 L~~l~-~~~-~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~  203 (704)
                      |.|-. -.. .+-...-..=.++..+....+++.        +++..|..+|..+..-..+.-........+..-+..++
T Consensus       198 L~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~--------~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amk  269 (859)
T KOG1241|consen  198 LYNSLEFTKANFNNEMERNYIMQVVCEATQSPDE--------EIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMK  269 (859)
T ss_pred             HHHHHHHHHHhhccHhhhceeeeeeeecccCCcH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            98876 111 111111112234555555555544        99999999999998655554444444555666667778


Q ss_pred             CCCHHHHHHHHHHHHHhccCCch---------------hhHHhH---hcCChHHHHHhhcC-------CCHHHHHHHHHH
Q 005282          204 FVDVKVQRAAAGALRTLAFKNDE---------------NKKLIV---ECNALPTLVLMLRS-------EDASVHFEAVGV  258 (704)
Q Consensus       204 ~~~~~~~~~a~~~L~~l~~~~~~---------------~~~~~~---~~~~i~~L~~lL~~-------~~~~v~~~a~~~  258 (704)
                      ++++++...++..=.++|...-+               ....+.   -.+++|.|+++|..       ++...-..|..+
T Consensus       270 s~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~C  349 (859)
T KOG1241|consen  270 SDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVC  349 (859)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHH
Confidence            99999999998888877742111               001111   12568888888863       233566666666


Q ss_pred             HHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHH
Q 005282          259 IGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEM  338 (704)
Q Consensus       259 L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~  338 (704)
                      |.-.++..   ...++. .+++.+-.-++++++.-+..++.+++.+..+....+..-+-.++++.++.++.++.-.++..
T Consensus       350 L~l~A~~~---~D~Iv~-~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdT  425 (859)
T KOG1241|consen  350 LMLFAQCV---GDDIVP-HVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDT  425 (859)
T ss_pred             HHHHHHHh---cccchh-hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcch
Confidence            66665331   122222 45555666778899999999999999988665566666667889999999999888889999


Q ss_pred             HHHHHHHhhcCCchh--hhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcc
Q 005282          339 SAFALGRLAQDTHNQ--AGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLA  388 (704)
Q Consensus       339 a~~~L~~l~~~~~~~--~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~  388 (704)
                      +.|+++.++..-...  ......+.+..++.-|+ ..|.+..+++|++.+|+
T Consensus       426 aAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~-DePrva~N~CWAf~~La  476 (859)
T KOG1241|consen  426 AAWTLGRIADFLPEAIINQELLQSKLSALLEGLN-DEPRVASNVCWAFISLA  476 (859)
T ss_pred             HHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhh-hCchHHHHHHHHHHHHH
Confidence            999999999764421  11111222333333332 47889999999999998

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=98.88  E-value=8.7e-08  Score=96.49  Aligned_cols=227  Identities=20%  Similarity=0.242  Sum_probs=160.4

Q ss_pred             CcHHHHHHHhhc-cCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhc------cCCcHHHHHHhcCCCHHHHHHHHHH
Q 005282          144 ALPHLVSLLKQY-KNGGNSRALSGVIRRAADAITNLAHENANIKTRVRV------EDGIPPLVELLKFVDVKVQRAAAGA  216 (704)
Q Consensus       144 ~l~~L~~lL~~~-~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~------~~~i~~L~~ll~~~~~~~~~~a~~~  216 (704)
                      ....++.+|+.. ..       .+++.+.+..+..+..+++.....+..      .....++++++..+|..++..|+..
T Consensus        56 ~~~~~l~lL~~~~~~-------~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~i  128 (312)
T PF03224_consen   56 YASLFLNLLNKLSSN-------DDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFI  128 (312)
T ss_dssp             ------HHHHHH----------HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCc-------HHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHH
Confidence            466777888776 32       399999999999999888766665555      2357888899999999999999999


Q ss_pred             HHHhccCCchhhHHhHhcCChHHHHHhhcC----CCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHh-----c
Q 005282          217 LRTLAFKNDENKKLIVECNALPTLVLMLRS----EDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLL-----S  287 (704)
Q Consensus       217 L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll-----~  287 (704)
                      +..+....+....... .+.++.++..+.+    ++.+.+..++.+|.++... +..+..+.+.++++.+..++     .
T Consensus       129 Lt~Ll~~~~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~-~~~R~~f~~~~~v~~l~~iL~~~~~~  206 (312)
T PF03224_consen  129 LTSLLSQGPKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRS-KEYRQVFWKSNGVSPLFDILRKQATN  206 (312)
T ss_dssp             HHHHHTSTTT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTS-HHHHHHHHTHHHHHHHHHHHH-----
T ss_pred             HHHHHHcCCccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCc-chhHHHHHhcCcHHHHHHHHHhhccc
Confidence            9999864444333322 3456677777664    4567789999999999865 88899999999999999999     2


Q ss_pred             --CCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCCc--hhhhHHhhCCh
Q 005282          288 --SSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQS-PDSQLKEMSAFALGRLAQDTH--NQAGIAQDGGI  362 (704)
Q Consensus       288 --~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~--~~~~~~~~~~~  362 (704)
                        ..+..++.+++.+++-++. +++....+...++++.|+.+++. ...++.+.+..++.|+.....  ....++..|++
T Consensus       207 ~~~~~~Ql~Y~~ll~lWlLSF-~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l  285 (312)
T PF03224_consen  207 SNSSGIQLQYQALLCLWLLSF-EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLL  285 (312)
T ss_dssp             ----HHHHHHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HH
T ss_pred             CCCCchhHHHHHHHHHHHHhc-CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHH
Confidence              2344568899999999975 66777778888899999999974 678899999999999998776  66667777666


Q ss_pred             HHHHHhhcC--CChhHHHHH
Q 005282          363 LPLLKLLDS--KNGSLQHNA  380 (704)
Q Consensus       363 ~~L~~ll~~--~~~~v~~~a  380 (704)
                      +.+-.+...  +|+++....
T Consensus       286 ~~l~~L~~rk~~Dedl~edl  305 (312)
T PF03224_consen  286 KTLQNLSERKWSDEDLTEDL  305 (312)
T ss_dssp             HHHHHHHSS--SSHHHHHHH
T ss_pred             HHHHHHhcCCCCCHHHHHHH
Confidence            555444432  577776544

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.82  E-value=5.9e-07  Score=84.17  Aligned_cols=294  Identities=17%  Similarity=0.138  Sum_probs=194.7

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhH-hcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHH
Q 005282          196 PPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIV-ECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVI  274 (704)
Q Consensus       196 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  274 (704)
                      .-++.++.+.+|.++..|..-+..++..  ..+.... +...++.+.+++...++  .+.|+.++.|+++. +..+..++
T Consensus         6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~-~~l~~~ll   80 (353)
T KOG2973|consen    6 VELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQK-EELRKKLL   80 (353)
T ss_pred             HHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhh-HHHHHHHH
Confidence            3478889999999999999999999853  2222222 33468888999987766  88899999999976 66666666


Q ss_pred             HcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHh------cCChHHHHHhhCCCCH--HHHHHHHHHHHHh
Q 005282          275 LAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQ------RGAVRPLIEMLQSPDS--QLKEMSAFALGRL  346 (704)
Q Consensus       275 ~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~------~~~i~~L~~ll~~~~~--~v~~~a~~~L~~l  346 (704)
                      +. ++..++..+.++........+..|.|++..+......+..      .|.+.........+..  .--.+.+..++|+
T Consensus        81 ~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nl  159 (353)
T KOG2973|consen   81 QD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANL  159 (353)
T ss_pred             HH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHH
Confidence            66 8888999999888888999999999999755443333221      3455555555544321  2235677889999


Q ss_pred             hcCCchhhhHHhhCChHH-HHHhhcCCChhHHH-HHHHHHHHcccCCchhhHHHhhC--CcccccccccccccchHHHHH
Q 005282          347 AQDTHNQAGIAQDGGILP-LLKLLDSKNGSLQH-NAAFALYGLADNEDNVADLVRVG--GVQKLQDGEFTVQPTKDCVAR  422 (704)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~-L~~ll~~~~~~v~~-~a~~~L~~l~~~~~~~~~l~~~g--~i~~l~~~~~~~~~~~~~~~~  422 (704)
                      ++...+|..+.....++. .+.-+.+.+..+|+ ..+++|.|.+-+......+...+  .++.++-.....        .
T Consensus       160 s~~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagp--------e  231 (353)
T KOG2973|consen  160 SQFEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGP--------E  231 (353)
T ss_pred             hhhhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCc--------c
Confidence            998888887766653322 22223345556655 67789999998777766666522  112211100000        0


Q ss_pred             HHHHHHHHhhcchhHHHHHHHh-----hccHHHHHHHHHHHHhccCCCccceeeecCCcHHHHHHHHhh-cchhhhhhHH
Q 005282          423 TLKRLEEKVHGRVLNHLLYLLR-----VADRAVKRRVTLALAHLCAPDDCKTIFIDNNGLELLLGLLES-TSVKQREESS  496 (704)
Q Consensus       423 ~~~~~~~~~~~~~~~~L~~ll~-----~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~~~~~a~  496 (704)
                      .+..  +.+  .-++.=++++.     .+++.++.....+|.-||.....|..+...|+-+.+-.+-.. .+++++.++-
T Consensus       232 e~sE--Edm--~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe~lR~kgvYpilRElhk~e~ded~~~ace  307 (353)
T KOG2973|consen  232 ELSE--EDM--AKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGREVLRSKGVYPILRELHKWEEDEDIREACE  307 (353)
T ss_pred             ccCH--HHH--hcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhHHHHHhcCchHHHHHHhcCCCcHHHHHHHH
Confidence            0000  000  01122224442     457899999999999999999999998777766666655443 8888888887


Q ss_pred             HHHHHHhhhcC
Q 005282          497 VALYKLATKAT  507 (704)
Q Consensus       497 ~~L~~L~~~~~  507 (704)
                      .....|.+.-+
T Consensus       308 ~vvq~Lv~~e~  318 (353)
T KOG2973|consen  308 QVVQMLVRLEP  318 (353)
T ss_pred             HHHHHHHhccc
Confidence            77777777554

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=98.81  E-value=1.1e-07  Score=95.77  Aligned_cols=228  Identities=16%  Similarity=0.216  Sum_probs=161.0

Q ss_pred             ChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHHHHHc------CCcHHHHHHHhhccCCCCCcchh
Q 005282           93 AVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQIIVDT------GALPHLVSLLKQYKNGGNSRALS  165 (704)
Q Consensus        93 ~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~~~~------g~l~~L~~lL~~~~~~~~~~~~~  165 (704)
                      ....++.+|+..+.        ++++....+..+..+. .++...+.+...      ....++++++..++.        
T Consensus        56 ~~~~~l~lL~~~~~--------~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~--------  119 (312)
T PF03224_consen   56 YASLFLNLLNKLSS--------NDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDS--------  119 (312)
T ss_dssp             ------HHHHHH-----------HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSH--------
T ss_pred             HHHHHHHHHHHccC--------cHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCH--------
Confidence            35566666666522        3589999999999999 787777766652      256777777776644        


Q ss_pred             HHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcC----CCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHH
Q 005282          166 GVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKF----VDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLV  241 (704)
Q Consensus       166 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~  241 (704)
                      .+...++..|..+....+....... .+.++.+++++.+    ++.+++..++.+|.++.. .+..|..+.+.++++.+.
T Consensus       120 ~i~~~a~~iLt~Ll~~~~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~~l~  197 (312)
T PF03224_consen  120 FIQLKAAFILTSLLSQGPKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-SKEYRQVFWKSNGVSPLF  197 (312)
T ss_dssp             HHHHHHHHHHHHHHTSTTT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT-SHHHHHHHHTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-cchhHHHHHhcCcHHHHH
Confidence            8999999999999865544333211 4566777777764    456778999999999996 899999999999999999


Q ss_pred             Hhh-----c--CCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcC-CChhHHHHHHHHHHHHhccCCc-ch
Q 005282          242 LML-----R--SEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSS-SCSESKREAALLLGQFAAADSN-SK  312 (704)
Q Consensus       242 ~lL-----~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~-~~  312 (704)
                      .++     .  ..+..++..++.+++.++.+ +.....+...+.++.|+.+++. ....+.+-++.++.|+....+. ..
T Consensus       198 ~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~-~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~  276 (312)
T PF03224_consen  198 DILRKQATNSNSSGIQLQYQALLCLWLLSFE-PEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNI  276 (312)
T ss_dssp             HHHH---------HHHHHHHHHHHHHHHTTS-HHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHH
T ss_pred             HHHHhhcccCCCCchhHHHHHHHHHHHHhcC-HHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHH
Confidence            999     2  34568899999999999976 6777778888899999999974 4566889999999999975554 66


Q ss_pred             HHHHhcCChHHHHHhhCC--CCHHHHHHH
Q 005282          313 VHIVQRGAVRPLIEMLQS--PDSQLKEMS  339 (704)
Q Consensus       313 ~~~~~~~~i~~L~~ll~~--~~~~v~~~a  339 (704)
                      ..++..|+++.+-.+...  +|+++.+..
T Consensus       277 ~~mv~~~~l~~l~~L~~rk~~Dedl~edl  305 (312)
T PF03224_consen  277 ELMVLCGLLKTLQNLSERKWSDEDLTEDL  305 (312)
T ss_dssp             HHHHHH-HHHHHHHHHSS--SSHHHHHHH
T ss_pred             HHHHHccHHHHHHHHhcCCCCCHHHHHHH
Confidence            777777777777776643  577776653

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.80  E-value=2.6e-08  Score=94.84  Aligned_cols=137  Identities=23%  Similarity=0.307  Sum_probs=114.3

Q ss_pred             eEeehhHHHHhhcCHHHHHhhcCCCCCCC-CC---ceEcCCCCHHHHHHHHHHHhcCccccChhhHHHHHHHHhhhChH-
Q 005282          545 KQFYAHRICLLASSDAFRAMFDGGYKEKN-AK---DVEIPNIRWNVFELMMRFIYTGNVDVSVDIAQDLLRAADQYLLE-  619 (704)
Q Consensus       545 ~~~~~hk~iL~~~s~~f~~~f~~~~~e~~-~~---~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~~~~ll~~A~~~~~~-  619 (704)
                      ..+|||+.+++ |++||+.||.|+|.|++ ..   ...+|.....+.+..++|+|+++.++.++-+.+++-.|+++.+. 
T Consensus       301 ~RyP~hla~i~-R~eyfk~mf~g~f~e~s~n~~~p~lslp~~~~~vveI~lr~lY~d~tdi~~~~A~dvll~ad~lal~~  379 (516)
T KOG0511|consen  301 DRYPAHLARIL-RVEYFKSMFVGDFIESSVNDTRPGLSLPSLADVVVEIDLRNLYCDQTDIIFDVASDVLLFADKLALAD  379 (516)
T ss_pred             ccccHHHHHHH-HHHHHHHHhccchhhhcCCccccccccchHHHHHHHHHHHHhhcccccchHHHHhhHHHHhhHhhhhh
Confidence            45999999999 89999999999999854 22   34456778899999999999999999999999999999999765 


Q ss_pred             -h-HHHHHHHHHHh---hCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCChhhhccchhcH
Q 005282          620 -G-LKRLCEYSIAQ---IISVENIMLMYELSEAYNATTLKQSCILFILEKFDKMRNKPWFFRLIRCVL  682 (704)
Q Consensus       620 -~-l~~~c~~~l~~---~~~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~L~~~~~  682 (704)
                       . |+......|.+   .++.-++.+++..+...+..+|...+..|+.+|+..+...|+|...-+...
T Consensus       380 dr~Lkt~as~~itq~~e~id~y~V~dIl~~~wd~~~~rlEqfa~~~~a~hl~~l~~dPe~~~~~~~s~  447 (516)
T KOG0511|consen  380 DRLLKTAASAEITQWLELIDMYGVLDILEYCWDLVACRLEQFAETHEARHLLLLLPDPEGDSSLRTSV  447 (516)
T ss_pred             hhhhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCCchhhHHHHhcc
Confidence             2 55555555543   455667899999999999999999999999999999999999987644433

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.79  E-value=1.4e-06  Score=85.33  Aligned_cols=340  Identities=12%  Similarity=0.156  Sum_probs=224.5

Q ss_pred             CcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhh------ccCCcHHHHHHhcCCCHHHHHHHHHHH
Q 005282          144 ALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVR------VEDGIPPLVELLKFVDVKVQRAAAGAL  217 (704)
Q Consensus       144 ~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~------~~~~i~~L~~ll~~~~~~~~~~a~~~L  217 (704)
                      .+..++.+++....       ++...+.+..+..+-..+...-..+.      +...-...+.++...+.-+...+.+.+
T Consensus        66 ~v~~fi~LlS~~~k-------dd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Il  138 (442)
T KOG2759|consen   66 YVKTFINLLSHIDK-------DDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRIL  138 (442)
T ss_pred             HHHHHHHHhchhhh-------HHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHH
Confidence            45567777766554       26777777777777654433222111      122356778888899998888888888


Q ss_pred             HHhccCCchhh---HHhHhcCChHHHHHhhcC-CCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhc--CCCh
Q 005282          218 RTLAFKNDENK---KLIVECNALPTLVLMLRS-EDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLS--SSCS  291 (704)
Q Consensus       218 ~~l~~~~~~~~---~~~~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~--~~~~  291 (704)
                      ..++...+..-   +.-..   ...|-..+++ .+..-...++++|-.+... ++.+..++..+++..++..+.  ..+.
T Consensus       139 s~la~~g~~~~~~~e~~~~---~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~-~eyR~~~v~adg~~~l~~~l~s~~~~~  214 (442)
T KOG2759|consen  139 SKLACFGNCKMELSELDVY---KGFLKEQLQSSTNNDYIQFAARCLQTLLRV-DEYRYAFVIADGVSLLIRILASTKCGF  214 (442)
T ss_pred             HHHHHhccccccchHHHHH---HHHHHHHHhccCCCchHHHHHHHHHHHhcC-cchhheeeecCcchhhHHHHhccCcch
Confidence            88875222111   11111   2334444544 6677788889999999877 677888888888898888883  3456


Q ss_pred             hHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCCch-------hhhHHhhCChH
Q 005282          292 ESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQS-PDSQLKEMSAFALGRLAQDTHN-------QAGIAQDGGIL  363 (704)
Q Consensus       292 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~-------~~~~~~~~~~~  363 (704)
                      .++...+.+++-++. ++.....+...+.++.|..++++ ...+|...++.++.|+....+.       ...++..+.. 
T Consensus       215 QlQYqsifciWlLtF-n~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~-  292 (442)
T KOG2759|consen  215 QLQYQSIFCIWLLTF-NPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVL-  292 (442)
T ss_pred             hHHHHHHHHHHHhhc-CHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCch-
Confidence            778899999998875 55555666667999999999986 4678889999999999976632       2334544444 


Q ss_pred             HHHHhhcC---CChhHHHHHHHH-------HHHcccCCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHh--
Q 005282          364 PLLKLLDS---KNGSLQHNAAFA-------LYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKV--  431 (704)
Q Consensus       364 ~L~~ll~~---~~~~v~~~a~~~-------L~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~--  431 (704)
                      +-++.|..   +|+++....-..       ...|++..+...++. .|.++--.    .+...     +.........  
T Consensus       293 k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~-sG~L~WSP----~Hk~e-----~FW~eNa~rlne  362 (442)
T KOG2759|consen  293 KTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELR-SGRLEWSP----VHKSE-----KFWRENADRLNE  362 (442)
T ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHH-hCCcCCCc----ccccc-----chHHHhHHHHhh
Confidence            44555533   456554443332       233344334443332 34433211    11111     0111111111  


Q ss_pred             -hcchhHHHHHHHhhcc-HHHHHHHHHHHHhccC-CCccceeeecCCcHHHHHHHHhhcchhhhhhHHHHHHHHhhhc
Q 005282          432 -HGRVLNHLLYLLRVAD-RAVKRRVTLALAHLCA-PDDCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLATKA  506 (704)
Q Consensus       432 -~~~~~~~L~~ll~~~~-~~v~~~a~~~L~~l~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~  506 (704)
                       .-.++..|+.++...+ |.+..-||.-|+.+.+ .|..+..+.+-||-+.+.+++.+++|+|+..|..|+..|..+.
T Consensus       363 nnyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~~  440 (442)
T KOG2759|consen  363 NNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMVHN  440 (442)
T ss_pred             ccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHhhc
Confidence             2357888999997755 8888889999999966 7788888888899999999999999999999999998887643

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.77  E-value=3e-07  Score=98.99  Aligned_cols=237  Identities=17%  Similarity=0.126  Sum_probs=190.9

Q ss_pred             HHHHHHHHHHHHHhhc-ChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHHHHHc
Q 005282           65 RAAAKTASHALVEFAK-NEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQIIVDT  142 (704)
Q Consensus        65 ~~~~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~~~~  142 (704)
                      +..+..|+..|...-. +|.....-..-|+.|.++++|+++..          +++.--+.+.++|. -++.++..+++.
T Consensus       484 QvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~----------ELrpiLVFIWAKILAvD~SCQ~dLvKe  553 (1387)
T KOG1517|consen  484 QVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSAR----------ELRPILVFIWAKILAVDPSCQADLVKE  553 (1387)
T ss_pred             HHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchH----------hhhhhHHHHHHHHHhcCchhHHHHHhc
Confidence            4567888888888777 89888888888999999999999987          99999999999998 889999999999


Q ss_pred             CCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCC-CHHHHHHHHHHHHHhc
Q 005282          143 GALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFV-DVKVQRAAAGALRTLA  221 (704)
Q Consensus       143 g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~a~~~L~~l~  221 (704)
                      ++-..+++.|.....-+     ++-+..|+..|+.++.+-+..+......+.+...+..|.++ .+-++..++-+|+.|-
T Consensus       554 ~g~~YF~~vL~~~~~~~-----~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW  628 (1387)
T KOG1517|consen  554 NGYKYFLQVLDPSQAIP-----PEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLW  628 (1387)
T ss_pred             cCceeEEEEecCcCCCC-----HHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHh
Confidence            99888888888732211     27888999999999987777788888888899999999985 7899999999999999


Q ss_pred             cCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCC----hhhHHHH-----------HHcCCH----HHH
Q 005282          222 FKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSS----PSIKKEV-----------ILAGAL----QPV  282 (704)
Q Consensus       222 ~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~----~~~~~~~-----------~~~~~l----~~L  282 (704)
                      .+.++.|-.=.+.+....|..+|.++-++||..|+.+|+.+..+.    ++....+           .....+    -.+
T Consensus       629 ~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~l  708 (1387)
T KOG1517|consen  629 EDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSL  708 (1387)
T ss_pred             hhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHH
Confidence            888888888888889999999999999999999999999988642    2222111           011122    255


Q ss_pred             HHHhcCCChhHHHHHHHHHHHHhccCCcchHHHH
Q 005282          283 IGLLSSSCSESKREAALLLGQFAAADSNSKVHIV  316 (704)
Q Consensus       283 ~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~  316 (704)
                      +.+++.+.+-++.+.+.+|..+..++......+.
T Consensus       709 l~~vsdgsplvr~ev~v~ls~~~~g~~~~~~~va  742 (1387)
T KOG1517|consen  709 LALVSDGSPLVRTEVVVALSHFVVGYVSHLKVVA  742 (1387)
T ss_pred             HHHHhccchHHHHHHHHHHHHHHHhhHHHhHHHh
Confidence            6667778888888888888888776655444333

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.75  E-value=4.5e-07  Score=91.57  Aligned_cols=354  Identities=16%  Similarity=0.148  Sum_probs=220.6

Q ss_pred             hCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHH
Q 005282           90 DNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIR  169 (704)
Q Consensus        90 ~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~  169 (704)
                      -.+++++.+..+.+.+.          .+|..||..+.|++.................++++..+.+.         -..
T Consensus        82 ~~~iv~Pv~~cf~D~d~----------~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~---------~V~  142 (675)
T KOG0212|consen   82 LEKIVPPVLNCFSDQDS----------QVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQ---------NVR  142 (675)
T ss_pred             HHHhhHHHHHhccCccc----------eeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCcc---------ccc
Confidence            45679999999999876          89999999999999322222222222344556666555443         233


Q ss_pred             HHHHHHHHhhhcChhhhh-hhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHh-HhcCChHHHHHhhcCC
Q 005282          170 RAADAITNLAHENANIKT-RVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLI-VECNALPTLVLMLRSE  247 (704)
Q Consensus       170 ~a~~~L~~l~~~~~~~~~-~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~-~~~~~i~~L~~lL~~~  247 (704)
                      .++..+-.+..+-..-+. .+.-.+++|.|-.-+...++..|...+.-+..+-. .| ..+.+ .-...++-|..+|.++
T Consensus       143 ~~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds-~P-~~~m~~yl~~~ldGLf~~LsD~  220 (675)
T KOG0212|consen  143 GGAELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDS-VP-DLEMISYLPSLLDGLFNMLSDS  220 (675)
T ss_pred             cHHHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhc-CC-cHHHHhcchHHHHHHHHHhcCC
Confidence            455555555432111111 34445667777777777899999988888887753 33 33333 3445678888999999


Q ss_pred             CHHHHHHHHHHHHHHhcC---ChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHH
Q 005282          248 DASVHFEAVGVIGNLVHS---SPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPL  324 (704)
Q Consensus       248 ~~~v~~~a~~~L~~l~~~---~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L  324 (704)
                      +++|+..+=.++.++...   .|..   +--...++.++.-+.++++.++..|+.-+..+..-.+ ......-.|++..+
T Consensus       221 s~eVr~~~~t~l~~fL~eI~s~P~s---~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g-~~~l~~~s~il~~i  296 (675)
T KOG0212|consen  221 SDEVRTLTDTLLSEFLAEIRSSPSS---MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPG-RDLLLYLSGILTAI  296 (675)
T ss_pred             cHHHHHHHHHHHHHHHHHHhcCccc---cCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCC-cchhhhhhhhhhhc
Confidence            999998777766665422   1221   1123567888888999999999988877777764333 22334446777888


Q ss_pred             HHhhCCCCHH-HHHHHHH---HHHHhhcCCchhhhHHhh-CChHHHHHhhcCCChhHHHHHHHHHHHcccCCchhhHHHh
Q 005282          325 IEMLQSPDSQ-LKEMSAF---ALGRLAQDTHNQAGIAQD-GGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADLVR  399 (704)
Q Consensus       325 ~~ll~~~~~~-v~~~a~~---~L~~l~~~~~~~~~~~~~-~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~  399 (704)
                      +..+.+.+.. ++..+..   .+..++........ +.. ..+..+.+.+.+...+.+-.++.-+..+-....+.- ++.
T Consensus       297 Lpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql-~~h  374 (675)
T KOG0212|consen  297 LPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQL-LVH  374 (675)
T ss_pred             ccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchh-hhh
Confidence            8888776553 4443332   23334433333322 333 345667778888888888888887776643221111 110


Q ss_pred             hCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHHHHHHHHhccCCCccceeeecCCcHHH
Q 005282          400 VGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPDDCKTIFIDNNGLEL  479 (704)
Q Consensus       400 ~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~  479 (704)
                                                      ...+.+.|+.-+.+.++++...+...++++|.+......   ...+..
T Consensus       375 --------------------------------~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~---~~fl~s  419 (675)
T KOG0212|consen  375 --------------------------------NDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNL---RKFLLS  419 (675)
T ss_pred             --------------------------------ccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccH---HHHHHH
Confidence                                            123566788888999999999999999999887655411   122333


Q ss_pred             HHHHHhhcchhhhhhHHHHHHHHhhh
Q 005282          480 LLGLLESTSVKQREESSVALYKLATK  505 (704)
Q Consensus       480 L~~ll~~~~~~~~~~a~~~L~~L~~~  505 (704)
                      |+++......-+..++.-.+.+||..
T Consensus       420 LL~~f~e~~~~l~~Rg~lIIRqlC~l  445 (675)
T KOG0212|consen  420 LLEMFKEDTKLLEVRGNLIIRQLCLL  445 (675)
T ss_pred             HHHHHhhhhHHHHhhhhHHHHHHHHH
Confidence            44444455555677777777777663

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=98.66  E-value=1e-05  Score=82.00  Aligned_cols=425  Identities=13%  Similarity=0.048  Sum_probs=233.1

Q ss_pred             chhhHHHHHHHHHHHHHhhc-ChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHH
Q 005282           61 DETDRAAAKTASHALVEFAK-NEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQI  138 (704)
Q Consensus        61 ~~~~~~~~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~  138 (704)
                      +.++..++..+..+|..+.. .-..-+...+.-......+.+++++.          ++..+|......+| ..-+.--.
T Consensus       231 q~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd----------~va~qavEfWsticeEeid~~~e  300 (858)
T COG5215         231 QGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQND----------EVAIQAVEFWSTICEEEIDGEME  300 (858)
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch----------HHHHHHHHHHHHHHHHHhhhHHH
Confidence            34455567778888877765 33444444454455566777888876          99999999998888 22221111


Q ss_pred             HH----------------HcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHh
Q 005282          139 IV----------------DTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELL  202 (704)
Q Consensus       139 ~~----------------~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll  202 (704)
                      ..                -.+++|.|+++|.+...+. ..++|.+-..|..+|--.+...   ...+.+. ++..+-+-+
T Consensus       301 ~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~-~~DdWn~smaA~sCLqlfaq~~---gd~i~~p-Vl~FvEqni  375 (858)
T COG5215         301 DKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDY-YGDDWNPSMAASSCLQLFAQLK---GDKIMRP-VLGFVEQNI  375 (858)
T ss_pred             HhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCc-cccccchhhhHHHHHHHHHHHh---hhHhHHH-HHHHHHHhc
Confidence            11                1347899999998865433 3345777777777766655311   1222222 334444556


Q ss_pred             cCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHH
Q 005282          203 KFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPV  282 (704)
Q Consensus       203 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L  282 (704)
                      ++++..-++.+..+++.+-.+..+....-+-...+|.+...+.++.-.++..++|+++.++.+   ....+-..|-++..
T Consensus       376 ~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~---va~~i~p~~Hl~~~  452 (858)
T COG5215         376 RSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADH---VAMIISPCGHLVLE  452 (858)
T ss_pred             cCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHH---HHHhcCccccccHH
Confidence            688999999999999999875555444444556788888888888888999999999999844   23333334444444


Q ss_pred             HHHhc---CCChhHHHHHHHHHHHHhccCCcch---HHHHh---cCChHHHHHhh--CCCCHHHHHHHHHHHHHhhcCCc
Q 005282          283 IGLLS---SSCSESKREAALLLGQFAAADSNSK---VHIVQ---RGAVRPLIEML--QSPDSQLKEMSAFALGRLAQDTH  351 (704)
Q Consensus       283 ~~ll~---~~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~---~~~i~~L~~ll--~~~~~~v~~~a~~~L~~l~~~~~  351 (704)
                      +....   .+++.+..++.|...|++.+-++..   ..++.   ..++..|++.-  ...+...|..+..+|+.+.....
T Consensus       453 vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~  532 (858)
T COG5215         453 VSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICP  532 (858)
T ss_pred             HHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcc
Confidence            33221   2356778899999999886543222   11111   12233333332  13456677778888887764332


Q ss_pred             hhhhHHhhCC-----------hHHHHHhh--------cCCChhHHHHHHHHHHHcccCCchhhH-HHhhCCcccccc--c
Q 005282          352 NQAGIAQDGG-----------ILPLLKLL--------DSKNGSLQHNAAFALYGLADNEDNVAD-LVRVGGVQKLQD--G  409 (704)
Q Consensus       352 ~~~~~~~~~~-----------~~~L~~ll--------~~~~~~v~~~a~~~L~~l~~~~~~~~~-l~~~g~i~~l~~--~  409 (704)
                      ....-.-.|.           +..+-+.+        ++-..+...-...+++..-.+-+.... +.+ -.+..+..  .
T Consensus       533 d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~D~lm~-Lf~r~les~~~  611 (858)
T COG5215         533 DAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVEDQLME-LFIRILESTKP  611 (858)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHH-HHHHHHhccCC
Confidence            1110000000           00000000        000112222222222322222222211 111 01111111  1


Q ss_pred             ccccccchHHHHHH---HHHHHHHhhcchhHHHHHHHhhccHHHHHHHHHHHHhccCCCccceeeecCCcHHHHHHHHhh
Q 005282          410 EFTVQPTKDCVART---LKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPDDCKTIFIDNNGLELLLGLLES  486 (704)
Q Consensus       410 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~ll~~  486 (704)
                      .+......-.++..   +.+.-++..+.++|.|..-+...+..+...|...++.|++.-+.........-...|++.+++
T Consensus       612 t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df~~y~d~~ms~LvQ~lss  691 (858)
T COG5215         612 TTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSS  691 (858)
T ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC
Confidence            11111112223333   333334556778899999998888888889999999997654433333333446678888876


Q ss_pred             --cchhhhhhHHHHHHHHhh
Q 005282          487 --TSVKQREESSVALYKLAT  504 (704)
Q Consensus       487 --~~~~~~~~a~~~L~~L~~  504 (704)
                        .+.+++-....+...++.
T Consensus       692 ~~~~R~lKPaiLSvFgDIAl  711 (858)
T COG5215         692 EATHRDLKPAILSVFGDIAL  711 (858)
T ss_pred             hhhccccchHHHHHHHHHHH
Confidence              334455444444454444

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.65  E-value=1.7e-05  Score=83.68  Aligned_cols=279  Identities=16%  Similarity=0.203  Sum_probs=203.0

Q ss_pred             CCchhhHHHHHHHHHHHHHhhcCh-----------------hHHHHHHh-CCChHHHHhhccCCCcCCCCCCCCchHHHH
Q 005282           59 SSDETDRAAAKTASHALVEFAKNE-----------------EIVSLIVD-NGAVPALVEHLQTPPQLTNAQIPYEHEVEK  120 (704)
Q Consensus        59 ~~~~~~~~~~~~a~~~L~~l~~~~-----------------~~~~~l~~-~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~  120 (704)
                      ..+-.++.+...++.++..+..+.                 +..+.++. .+.|..|+..+...+-          .||.
T Consensus        71 ~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF----------~VR~  140 (970)
T KOG0946|consen   71 QRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDF----------HVRL  140 (970)
T ss_pred             hhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhch----------hhhh
Confidence            334444556677777777765421                 34455553 4888999999988653          8999


Q ss_pred             HHHHHHHhhc--CChhhHHHHHHc-CCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHH
Q 005282          121 ECAFALGLLA--VKPEHQQIIVDT-GALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPP  197 (704)
Q Consensus       121 ~a~~~L~~l~--~~~~~~~~~~~~-g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~  197 (704)
                      .++..+.++.  ..++.++.+... -+|..++.+|.+...        .+|..++..|..+..+++..+..+.-.+++..
T Consensus       141 ~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE--------~IRNe~iLlL~eL~k~n~~IQKlVAFENaFer  212 (970)
T KOG0946|consen  141 YAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSRE--------PIRNEAILLLSELVKDNSSIQKLVAFENAFER  212 (970)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhh--------hhchhHHHHHHHHHccCchHHHHHHHHHHHHH
Confidence            9999999998  567788877665 589999999999886        78889999999999999999999999999999


Q ss_pred             HHHHhcCC----CHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcC---CCHH----------HHHHHHHHHH
Q 005282          198 LVELLKFV----DVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRS---EDAS----------VHFEAVGVIG  260 (704)
Q Consensus       198 L~~ll~~~----~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~---~~~~----------v~~~a~~~L~  260 (704)
                      |+.++...    ..-|..-++..|.||..++..++..+.+.+.+|.|.++|..   .+.+          -...++.++.
T Consensus       213 LfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr  292 (970)
T KOG0946|consen  213 LFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVR  292 (970)
T ss_pred             HHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHH
Confidence            99999832    23578889999999999899999999999999999988862   2311          1224455555


Q ss_pred             HHhcCC------hhhHHHHHHcCCHHHHHHHhcCC--ChhHHHHHHHHHHHHhccCCcchHHHHhcC---------Ch-H
Q 005282          261 NLVHSS------PSIKKEVILAGALQPVIGLLSSS--CSESKREAALLLGQFAAADSNSKVHIVQRG---------AV-R  322 (704)
Q Consensus       261 ~l~~~~------~~~~~~~~~~~~l~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~---------~i-~  322 (704)
                      .+..-.      ..+...+...+++..|..++-++  ..+++..+.-++++...++..++..+.+..         .+ -
T Consensus       293 ~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivv  372 (970)
T KOG0946|consen  293 SLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVV  372 (970)
T ss_pred             HhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhH
Confidence            554321      12334566788999999888766  456788888899999988887777776531         11 1


Q ss_pred             HHHHhhC-CCCHHHHHHHHHHHHHhhc-CCchhhh
Q 005282          323 PLIEMLQ-SPDSQLKEMSAFALGRLAQ-DTHNQAG  355 (704)
Q Consensus       323 ~L~~ll~-~~~~~v~~~a~~~L~~l~~-~~~~~~~  355 (704)
                      .++.+.. ...+..|.++..++..+.. +.+.+..
T Consensus       373 llmsm~ne~q~~~lRcAv~ycf~s~l~dN~~gq~~  407 (970)
T KOG0946|consen  373 LLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDGQRK  407 (970)
T ss_pred             HHHHHHhccCCchHHHHHHHHHHHHHhcchhhHHH
Confidence            2233332 3567788888888876664 3444433

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=98.63  E-value=6e-05  Score=76.67  Aligned_cols=412  Identities=19%  Similarity=0.146  Sum_probs=228.7

Q ss_pred             hHHHHH-HHHHHHHhhhccCCchhhHHHHHHHHHHHHHhhcChhHHHHHHhCCC----hHHHHhhccCCCcCCCCCCCCc
Q 005282           41 QDLVQD-IRAQIDILNSKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDNGA----VPALVEHLQTPPQLTNAQIPYE  115 (704)
Q Consensus        41 ~~~~~~-~~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~----i~~L~~lL~~~~~~~~~~~~~d  115 (704)
                      +.+.+. ...+..++...++. +.+..++..++.+|.+-..  .++..+...+-    +...++.-+.+          |
T Consensus       168 e~li~~sN~il~aiv~ga~k~-et~~avRLaaL~aL~dsl~--fv~~nf~~E~erNy~mqvvceatq~~----------d  234 (858)
T COG5215         168 EDLIQMSNVILFAIVMGALKN-ETTSAVRLAALKALMDSLM--FVQGNFCYEEERNYFMQVVCEATQGN----------D  234 (858)
T ss_pred             HHHHHHhhHHHHHHHHhhccc-CchHHHHHHHHHHHHHHHH--HHHHhhcchhhhchhheeeehhccCC----------c
Confidence            444444 44444455444443 4455578888888877221  12222222222    34444444444          4


Q ss_pred             hHHHHHHHHHHHhhc-CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhh-----
Q 005282          116 HEVEKECAFALGLLA-VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRV-----  189 (704)
Q Consensus       116 ~~v~~~a~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~-----  189 (704)
                      .+++..|..+|.++- -.=.+-+...+.-......+.++++++        ++..+++..-+.+|.+.-+.....     
T Consensus       235 ~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd--------~va~qavEfWsticeEeid~~~e~~~~pe  306 (858)
T COG5215         235 EELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQND--------EVAIQAVEFWSTICEEEIDGEMEDKYLPE  306 (858)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch--------HHHHHHHHHHHHHHHHHhhhHHHHhhccc
Confidence            599999999999998 333333344444445566677777776        888888888888885332221111     


Q ss_pred             -----------hccCCcHHHHHHhcC-------CCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHH
Q 005282          190 -----------RVEDGIPPLVELLKF-------VDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASV  251 (704)
Q Consensus       190 -----------~~~~~i~~L~~ll~~-------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v  251 (704)
                                 ...+++|.|+.+|..       +++.+-..|..||...+..   ....+.+. ++..+-+-+++++..-
T Consensus       307 ~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~---~gd~i~~p-Vl~FvEqni~~~~w~n  382 (858)
T COG5215         307 VPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQL---KGDKIMRP-VLGFVEQNIRSESWAN  382 (858)
T ss_pred             CchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHH---hhhHhHHH-HHHHHHHhccCchhhh
Confidence                       123468899999974       3456666677777666541   11122222 4445555677889999


Q ss_pred             HHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhh-C-
Q 005282          252 HFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEML-Q-  329 (704)
Q Consensus       252 ~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll-~-  329 (704)
                      ++.++.+++.+-.+..+....-.-...+|.+...+.++.-.+...++|+++.++.+-+.   .+-..|-++..+..+ . 
T Consensus       383 reaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~---~i~p~~Hl~~~vsa~liG  459 (858)
T COG5215         383 REAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAM---IISPCGHLVLEVSASLIG  459 (858)
T ss_pred             HHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHH---hcCccccccHHHHHHHhh
Confidence            99999999999876544333333456788888888888888899999999999853211   122223333333322 1 


Q ss_pred             -CCCHHHHHHHHHHHHHhhcCCchhh---hHHhhCChHHHHHhh------cCCChhHHHHHHHHHHHccc-CCchhhHHH
Q 005282          330 -SPDSQLKEMSAFALGRLAQDTHNQA---GIAQDGGILPLLKLL------DSKNGSLQHNAAFALYGLAD-NEDNVADLV  398 (704)
Q Consensus       330 -~~~~~v~~~a~~~L~~l~~~~~~~~---~~~~~~~~~~L~~ll------~~~~~~v~~~a~~~L~~l~~-~~~~~~~l~  398 (704)
                       .+.+.+..+++|...|++.+-....   .-.-....+.++.-|      ...+.+.|..+..+|+.+.. .++....+.
T Consensus       460 l~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~  539 (858)
T COG5215         460 LMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDIL  539 (858)
T ss_pred             hhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHH
Confidence             2456777889999999986522111   111111222233222      12355677788888888764 333333322


Q ss_pred             hhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhcc----HHHHHHHHHHHHhccC-CCccceeeec
Q 005282          399 RVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVAD----RAVKRRVTLALAHLCA-PDDCKTIFID  473 (704)
Q Consensus       399 ~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~----~~v~~~a~~~L~~l~~-~~~~~~~l~~  473 (704)
                      . |...                 ....++++     .+..+-+++...|    .+++.+-+..|..+.+ ....-.. .+
T Consensus       540 a-~~~~-----------------~~~~kl~~-----~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~-v~  595 (858)
T COG5215         540 A-GFYD-----------------YTSKKLDE-----CISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIED-VE  595 (858)
T ss_pred             H-HHHH-----------------HHHHHHHH-----HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCccc-HH
Confidence            1 1111                 11222222     2222223333332    5677777778777733 2221111 12


Q ss_pred             CCcHHHHHHHHhhcchh-hhhhHHHHHHHHhh
Q 005282          474 NNGLELLLGLLESTSVK-QREESSVALYKLAT  504 (704)
Q Consensus       474 ~~~i~~L~~ll~~~~~~-~~~~a~~~L~~L~~  504 (704)
                      .-.+..+++++++..+. +......++.+|+.
T Consensus       596 D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~  627 (858)
T COG5215         596 DQLMELFIRILESTKPTTAFGDVYTAISALST  627 (858)
T ss_pred             HHHHHHHHHHHhccCCchhhhHHHHHHHHHHH
Confidence            23577888888876433 33344445555544

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=98.62  E-value=3.5e-05  Score=72.94  Aligned_cols=355  Identities=16%  Similarity=0.169  Sum_probs=232.5

Q ss_pred             hHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChh--hHH--HHHHcCCcHHHHHHHhhccCCCCCcchhHHH
Q 005282           94 VPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPE--HQQ--IIVDTGALPHLVSLLKQYKNGGNSRALSGVI  168 (704)
Q Consensus        94 i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~--~~~--~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~  168 (704)
                      ++.|-.-|..++.          .|+..++..++.+. +...  ...  .+++.|.++.++..+-..++        ++.
T Consensus        84 mpdLQrGLiadda----------sVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggedd--------eVA  145 (524)
T KOG4413|consen   84 MPDLQRGLIADDA----------SVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDD--------EVA  145 (524)
T ss_pred             hHHHHhcccCCcc----------hhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcH--------HHH
Confidence            4555555555544          79999999999998 3332  222  35578899999998887776        899


Q ss_pred             HHHHHHHHHhhhcChhhhhhhhccCCcHH--HHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcC
Q 005282          169 RRAADAITNLAHENANIKTRVRVEDGIPP--LVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRS  246 (704)
Q Consensus       169 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~--L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~  246 (704)
                      ..|...+..++. .+..-..++.......  +..+....+.-.|...+..+..+..-+++........|.+..|..-+.-
T Consensus       146 kAAiesikrial-fpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkG  224 (524)
T KOG4413|consen  146 KAAIESIKRIAL-FPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKG  224 (524)
T ss_pred             HHHHHHHHHHHh-cHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcC
Confidence            999999999986 4555666777666554  3444445666778888888888877788888888889999988887764


Q ss_pred             -CCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChh--HHHHHHHHHHHHhccCCcchHHHHhc-----
Q 005282          247 -EDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSE--SKREAALLLGQFAAADSNSKVHIVQR-----  318 (704)
Q Consensus       247 -~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~--~~~~a~~~L~~l~~~~~~~~~~~~~~-----  318 (704)
                       .|.-|+..++.....++.. +..++.+.+.|+++.+..++...+.+  -.-.+....+.+..  +.+...+...     
T Consensus       225 teDtLVianciElvteLaet-eHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffg--keaimdvseeaicea  301 (524)
T KOG4413|consen  225 TEDTLVIANCIELVTELAET-EHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFG--KEAIMDVSEEAICEA  301 (524)
T ss_pred             CcceeehhhHHHHHHHHHHH-hhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhc--chHHhhcCHHHHHHH
Confidence             7788888999999999855 55667777899999999999654333  33345555444432  1222222122     


Q ss_pred             --CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCC--hHH-HHHhhcCCChhHHHHHHHHHHHcccCCch
Q 005282          319 --GAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGG--ILP-LLKLLDSKNGSLQHNAAFALYGLADNEDN  393 (704)
Q Consensus       319 --~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~--~~~-L~~ll~~~~~~v~~~a~~~L~~l~~~~~~  393 (704)
                        -.++....+....|+..++.|..+++.+.++.++...+...|.  ... +.+..+.....-+..+..+|.++++.-.-
T Consensus       302 liiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdqnahakqeaaihaLaaIagelrl  381 (524)
T KOG4413|consen  302 LIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRL  381 (524)
T ss_pred             HHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccC
Confidence              2344455566778999999999999999999988887777665  333 33444444445677888888888762211


Q ss_pred             h-hHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHHHHHHHHhccC-CCccceee
Q 005282          394 V-ADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCA-PDDCKTIF  471 (704)
Q Consensus       394 ~-~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~l  471 (704)
                      . .++........           .+|.  .+........-+.+..++.++..+.++++.++..++..++. +.-.+.++
T Consensus       382 kpeqitDgkaeer-----------lrcl--ifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAiaaqPWalkeif  448 (524)
T KOG4413|consen  382 KPEQITDGKAEER-----------LRCL--IFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAAQPWALKEIF  448 (524)
T ss_pred             ChhhccccHHHHH-----------HHHH--HHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHcCcHHHHHHh
Confidence            1 11111111111           1111  11111111111344556777788899999999999999954 55555666


Q ss_pred             ecCCcHHHHHHH
Q 005282          472 IDNNGLELLLGL  483 (704)
Q Consensus       472 ~~~~~i~~L~~l  483 (704)
                      ...+.|......
T Consensus       449 akeefieiVtDa  460 (524)
T KOG4413|consen  449 AKEEFIEIVTDA  460 (524)
T ss_pred             cCccceeeeccc
Confidence            555555544443

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.58  E-value=3.1e-06  Score=85.65  Aligned_cols=321  Identities=16%  Similarity=0.125  Sum_probs=216.1

Q ss_pred             HHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHH
Q 005282          140 VDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRT  219 (704)
Q Consensus       140 ~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~  219 (704)
                      .-.+.+++++..+.+.+.        .++.+||..+.|++.- ...........+...+.++..+.+..++..| ..+-.
T Consensus        81 Y~~~iv~Pv~~cf~D~d~--------~vRyyACEsLYNiaKv-~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~a-eLLdR  150 (675)
T KOG0212|consen   81 YLEKIVPPVLNCFSDQDS--------QVRYYACESLYNIAKV-AKGEVLVYFNEIFDVLCKLSADSDQNVRGGA-ELLDR  150 (675)
T ss_pred             HHHHhhHHHHHhccCccc--------eeeeHhHHHHHHHHHH-hccCcccchHHHHHHHHHHhcCCccccccHH-HHHHH
Confidence            345678999999988876        8999999999999852 2222223334455666676666766666433 33333


Q ss_pred             hccCCc-hhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHH
Q 005282          220 LAFKND-ENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAA  298 (704)
Q Consensus       220 l~~~~~-~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~  298 (704)
                      +..+-. +....+--.+.+|.|-.-+...++..|...+.-|..+-.. |...-.-.-..+++-|...|.+++.+++..+-
T Consensus       151 LikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~-P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~  229 (675)
T KOG0212|consen  151 LIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSV-PDLEMISYLPSLLDGLFNMLSDSSDEVRTLTD  229 (675)
T ss_pred             HHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcC-CcHHHHhcchHHHHHHHHHhcCCcHHHHHHHH
Confidence            322111 1111333344566666666678999999998888887544 33222222356788899999999999998877


Q ss_pred             HHHHHHhcc---CCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChh
Q 005282          299 LLLGQFAAA---DSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGS  375 (704)
Q Consensus       299 ~~L~~l~~~---~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~  375 (704)
                      .+++++...   ++..   +--...++.++.-++++++.++..|..-+..+...........-.|.+..++.++.++.+.
T Consensus       230 t~l~~fL~eI~s~P~s---~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~  306 (675)
T KOG0212|consen  230 TLLSEFLAEIRSSPSS---MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEM  306 (675)
T ss_pred             HHHHHHHHHHhcCccc---cCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccc
Confidence            777766432   2222   1223578899999999999999999888888887776666666677778888888776663


Q ss_pred             -HHHHHHH---HHHHcccCCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHH
Q 005282          376 -LQHNAAF---ALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVK  451 (704)
Q Consensus       376 -v~~~a~~---~L~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~  451 (704)
                       ++..+..   .|..+.+.+.....      ++                           .+.++..+...+..+..+.+
T Consensus       307 ~i~~~a~~~n~~l~~l~s~~~~~~~------id---------------------------~~~ii~vl~~~l~~~~~~tr  353 (675)
T KOG0212|consen  307 SIKEYAQMVNGLLLKLVSSERLKEE------ID---------------------------YGSIIEVLTKYLSDDREETR  353 (675)
T ss_pred             cHHHHHHHHHHHHHHHHhhhhhccc------cc---------------------------hHHHHHHHHHHhhcchHHHH
Confidence             4443332   23334333322222      11                           12256678888888999999


Q ss_pred             HHHHHHHHhccCCCccceeeecCCcHHHHHHHHhhcchhhhhhHHHHHHHHhhhcC
Q 005282          452 RRVTLALAHLCAPDDCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLATKAT  507 (704)
Q Consensus       452 ~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~  507 (704)
                      ..+..-+..|-...+++.........+.|+.-+.+.+.++-..+...+.+++.++.
T Consensus       354 i~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~  409 (675)
T KOG0212|consen  354 IAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSN  409 (675)
T ss_pred             HHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcc
Confidence            99998888886666666665566778888888888888999999999999999774

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.58  E-value=1.5e-06  Score=93.75  Aligned_cols=243  Identities=13%  Similarity=0.151  Sum_probs=197.6

Q ss_pred             hHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHH
Q 005282           94 VPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAA  172 (704)
Q Consensus        94 i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~  172 (704)
                      +|.++++|-+.            --|.+|+..|+... -++-....-..-|+.|.++++|.++..        +++-..+
T Consensus       474 LPiVLQVLLSQ------------vHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~--------ELrpiLV  533 (1387)
T KOG1517|consen  474 LPIVLQVLLSQ------------VHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSAR--------ELRPILV  533 (1387)
T ss_pred             cchHHHHHHHH------------HHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchH--------hhhhhHH
Confidence            67788887776            35778999999999 677777778888999999999999876        8888888


Q ss_pred             HHHHHhhhcChhhhhhhhccCCcHHHHHHhcC-C--CHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCC-C
Q 005282          173 DAITNLAHENANIKTRVRVEDGIPPLVELLKF-V--DVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSE-D  248 (704)
Q Consensus       173 ~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~-~  248 (704)
                      .+-+.+..-++.++..+++.++-...++.|.. +  +++-+..|+.+|+.++.+.+..++...+.+.+...+..|+++ .
T Consensus       534 FIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~  613 (1387)
T KOG1517|consen  534 FIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPE  613 (1387)
T ss_pred             HHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCcc
Confidence            88888776678899999999998888888875 2  468889999999999988888888889999999999999985 6


Q ss_pred             HHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccC----CcchHHH---------
Q 005282          249 ASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAAD----SNSKVHI---------  315 (704)
Q Consensus       249 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~----~~~~~~~---------  315 (704)
                      +-++.+++-+|+.|.++.+..+=.-.+.++-+.|..+|.++-+++|..|+.+|+.+....    ++....+         
T Consensus       614 pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~  693 (1387)
T KOG1517|consen  614 PLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDE  693 (1387)
T ss_pred             HHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhh
Confidence            899999999999999988877766677889999999999999999999999999988642    2221111         


Q ss_pred             ---HhcCCh---HHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhH
Q 005282          316 ---VQRGAV---RPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGI  356 (704)
Q Consensus       316 ---~~~~~i---~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~  356 (704)
                         .+..+.   ..++.+++.+.+-++.+...+|..+..+.......
T Consensus       694 ~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~~~~~~~  740 (1387)
T KOG1517|consen  694 RTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVVGYVSHLKV  740 (1387)
T ss_pred             hhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHHhhHHHhHH
Confidence               222222   25666677888999999999999998776554433

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=98.54  E-value=1.8e-05  Score=84.99  Aligned_cols=414  Identities=21%  Similarity=0.199  Sum_probs=222.5

Q ss_pred             HHHHHHHHhhhccCCchhhHHHHHHHHHHHHHhhcC--hhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHH
Q 005282           46 DIRAQIDILNSKFSSDETDRAAAKTASHALVEFAKN--EEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECA  123 (704)
Q Consensus        46 ~~~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~--~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~  123 (704)
                      .+..|.....+-+...+.++.++..|+.++..+..+  +.....+  ...++.+++-|++.            -+|..|+
T Consensus       565 ~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL--~~~L~il~eRl~nE------------iTRl~Av  630 (1233)
T KOG1824|consen  565 YVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNEL--PRTLPILLERLGNE------------ITRLTAV  630 (1233)
T ss_pred             hHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhh--HHHHHHHHHHHhch------------hHHHHHH
Confidence            345555555555656677788888888888876542  1111111  23456666666665            5799999


Q ss_pred             HHHHhhcCChh-hHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHh
Q 005282          124 FALGLLAVKPE-HQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELL  202 (704)
Q Consensus       124 ~~L~~l~~~~~-~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll  202 (704)
                      +++.-++.++- .-..-.-..+++.+..++++...        .++..++.++-.+.......-..-.-.-++.-+..++
T Consensus       631 kAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r--------~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Li  702 (1233)
T KOG1824|consen  631 KALTLIAMSPLDIDLSPVLTEILPELASFLRKNQR--------ALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLI  702 (1233)
T ss_pred             HHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhh
Confidence            99999995443 22222334578889999988776        6777777777777642211111111112233344555


Q ss_pred             cCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCH---------------------------------
Q 005282          203 KFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDA---------------------------------  249 (704)
Q Consensus       203 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~---------------------------------  249 (704)
                      ...+-.+-..|..+|..+....+ ........-+++.++.+++++--                                 
T Consensus       703 sesdlhvt~~a~~~L~tl~~~~p-s~l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~~l~y~~l~s~lt  781 (1233)
T KOG1824|consen  703 SESDLHVTQLAVAFLTTLAIIQP-SSLLKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVITKEPDLDYISLLSLLT  781 (1233)
T ss_pred             hHHHHHHHHHHHHHHHHHHhccc-HHHHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhcCCCCccHHHHHHHHc
Confidence            56677777888888888876333 22223333355555555554321                                 


Q ss_pred             ---------HHHHHHHHHHH----HHhcCChhhHHHHHHcCCHHHHH-HHhc-CCChhHHHHHHHHHHHHhccCCcchHH
Q 005282          250 ---------SVHFEAVGVIG----NLVHSSPSIKKEVILAGALQPVI-GLLS-SSCSESKREAALLLGQFAAADSNSKVH  314 (704)
Q Consensus       250 ---------~v~~~a~~~L~----~l~~~~~~~~~~~~~~~~l~~L~-~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~  314 (704)
                               .+-+.|...++    .++...+..     .......+. .+.+ ..+..++.-|...++.+-.+...    
T Consensus       782 ~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~-----s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~----  852 (1233)
T KOG1824|consen  782 APVYEQVTDGLHKQAYYSIAKCVAALTCACPQK-----SKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDL----  852 (1233)
T ss_pred             CCcccccccchhHHHHHHHHHHHHHHHHhcccc-----chhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCC----
Confidence                     01111111111    111111100     001122222 2222 22344566666666666432221    


Q ss_pred             HHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhh--hHHh---hCC------hHHHHHhhcCCChhH-HHHHHH
Q 005282          315 IVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQA--GIAQ---DGG------ILPLLKLLDSKNGSL-QHNAAF  382 (704)
Q Consensus       315 ~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~--~~~~---~~~------~~~L~~ll~~~~~~v-~~~a~~  382 (704)
                      ....+.-..+++.+.+++.+++.+|..||++++.++-..-  .+.+   ...      +-.+...+...+... +..+-.
T Consensus       853 s~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~~yLpfil~qi~sqpk~QyLLLhSlkevi~~~svd~~~~~v~~  932 (1233)
T KOG1824|consen  853 SPQNELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLPKYLPFILEQIESQPKRQYLLLHSLKEVIVSASVDGLKPYVEK  932 (1233)
T ss_pred             CcchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchHhHHHHHHHHHhcchHhHHHHHHHHHHHHHHhccchhhhhHHH
Confidence            1223556688888999999999999999999998643211  0100   000      111222222222211 111211


Q ss_pred             HHHHcccCCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHHHHHHHHhcc
Q 005282          383 ALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLC  462 (704)
Q Consensus       383 ~L~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~  462 (704)
                      +..-|..+-++.+...+                  .-++..+.++...-.+.+++.|-..++++.+..+.-+..++....
T Consensus       933 IW~lL~k~cE~~eegtR------------------~vvAECLGkL~l~epesLlpkL~~~~~S~a~~~rs~vvsavKfsi  994 (1233)
T KOG1824|consen  933 IWALLFKHCECAEEGTR------------------NVVAECLGKLVLIEPESLLPKLKLLLRSEASNTRSSVVSAVKFSI  994 (1233)
T ss_pred             HHHHHHHhcccchhhhH------------------HHHHHHhhhHHhCChHHHHHHHHHHhcCCCcchhhhhhheeeeee
Confidence            22222111111111110                  011223333333334457888888899999988888777776664


Q ss_pred             CCCccceeeecCCcHHHHHHHHhhcchhhhhhHHHHHHHHhhhcCCC
Q 005282          463 APDDCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLATKATSL  509 (704)
Q Consensus       463 ~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~~~  509 (704)
                      ......--.....-+...+.++++++..||+.|..++..-+.+.+++
T Consensus       995 sd~p~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpsl 1041 (1233)
T KOG1824|consen  995 SDQPQPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSL 1041 (1233)
T ss_pred             cCCCCccCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhH
Confidence            43322222223345778889999999999999999999988877643

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.53  E-value=6.8e-05  Score=78.44  Aligned_cols=229  Identities=16%  Similarity=0.201  Sum_probs=160.8

Q ss_pred             ccccccCCchhhHHHHHHHHHHHHhhhccCCchhhHHHHHHHHHHHHHhhc-ChhHHHHHHhCCChHHHHhhccCCCcCC
Q 005282           30 KVSIVESGATQQDLVQDIRAQIDILNSKFSSDETDRAAAKTASHALVEFAK-NEEIVSLIVDNGAVPALVEHLQTPPQLT  108 (704)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~lL~~~~~~~  108 (704)
                      .++...+++=.++++..+-.|+   .      ++.+.++.+|.-.+..+.- -|+..+.     ++|.|.+-|.++++  
T Consensus       132 GLS~fvTpdLARDLa~Dv~tLL---~------sskpYvRKkAIl~lykvFLkYPeAlr~-----~FprL~EkLeDpDp--  195 (877)
T KOG1059|consen  132 GLSCIVTPDLARDLADDVFTLL---N------SSKPYVRKKAILLLYKVFLKYPEALRP-----CFPRLVEKLEDPDP--  195 (877)
T ss_pred             ccccccCchhhHHHHHHHHHHH---h------cCchHHHHHHHHHHHHHHHhhhHhHhh-----hHHHHHHhccCCCc--
Confidence            3455555565666665553333   2      2667889999998888765 2443333     47999999999965  


Q ss_pred             CCCCCCchHHHHHHHHHHHhhc-CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhh
Q 005282          109 NAQIPYEHEVEKECAFALGLLA-VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKT  187 (704)
Q Consensus       109 ~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~  187 (704)
                              .|+..|..+++.|+ .+|.+--.     .-|.+..+|.+..++       =+.-..+..+++|+.-.|....
T Consensus       196 --------~V~SAAV~VICELArKnPknyL~-----LAP~ffkllttSsNN-------WmLIKiiKLF~aLtplEPRLgK  255 (877)
T KOG1059|consen  196 --------SVVSAAVSVICELARKNPQNYLQ-----LAPLFYKLLVTSSNN-------WVLIKLLKLFAALTPLEPRLGK  255 (877)
T ss_pred             --------hHHHHHHHHHHHHHhhCCccccc-----ccHHHHHHHhccCCC-------eehHHHHHHHhhccccCchhhh
Confidence                    99999999999999 88887433     458899999887764       3455677788888865665443


Q ss_pred             hhhccCCcHHHHHHhcCCCH-HHHHHHHHHHHH--hccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhc
Q 005282          188 RVRVEDGIPPLVELLKFVDV-KVQRAAAGALRT--LAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVH  264 (704)
Q Consensus       188 ~~~~~~~i~~L~~ll~~~~~-~~~~~a~~~L~~--l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~  264 (704)
                           ..+++|..++.+... .+...++.++..  ++.+.+++-..+.-  .++.|-.++.++|+..+..++.+++.+..
T Consensus       256 -----KLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiqL--CvqKLr~fiedsDqNLKYlgLlam~KI~k  328 (877)
T KOG1059|consen  256 -----KLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQL--CVQKLRIFIEDSDQNLKYLGLLAMSKILK  328 (877)
T ss_pred             -----hhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHHH--HHHHHhhhhhcCCccHHHHHHHHHHHHhh
Confidence                 568899999987643 344444444433  23232222222111  35667778889999999999999999997


Q ss_pred             CChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhc
Q 005282          265 SSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAA  306 (704)
Q Consensus       265 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~  306 (704)
                      .++...++     .-+.++..|.+.++.++..|+..|..+..
T Consensus       329 tHp~~Vqa-----~kdlIlrcL~DkD~SIRlrALdLl~gmVs  365 (877)
T KOG1059|consen  329 THPKAVQA-----HKDLILRCLDDKDESIRLRALDLLYGMVS  365 (877)
T ss_pred             hCHHHHHH-----hHHHHHHHhccCCchhHHHHHHHHHHHhh
Confidence            77665442     34678899999999999999999998874

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=98.50  E-value=1.5e-05  Score=83.31  Aligned_cols=388  Identities=14%  Similarity=0.066  Sum_probs=220.1

Q ss_pred             HHHHHHHhhhccCCchhhHHHHHHHHHHHHHhhcChhHHHHHHhCCC-------hHHHHhhccCCCcCCCCCCCCchHHH
Q 005282           47 IRAQIDILNSKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDNGA-------VPALVEHLQTPPQLTNAQIPYEHEVE  119 (704)
Q Consensus        47 ~~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~-------i~~L~~lL~~~~~~~~~~~~~d~~v~  119 (704)
                      ++.++++|..+..+..+-+ .+...+++...++-       +...+.       +..+-..|.+...          .||
T Consensus       509 ip~llpfLkavc~SkkSwq-aRhTgIkivqqIai-------l~Gcsvlphl~~lv~ii~~gl~De~q----------kVR  570 (1172)
T KOG0213|consen  509 IPALLPFLKAVCGSKKSWQ-ARHTGIKIVQQIAI-------LSGCSVLPHLKPLVKIIEHGLKDEQQ----------KVR  570 (1172)
T ss_pred             cHHHHHHHHHHhccccchh-hhchhhHHHHHHHH-------HhcchhhhhhHHHHHHHHHhhcccch----------hhh
Confidence            5666777766664442222 34444454444432       111222       3334444555544          788


Q ss_pred             HHHHHHHHhhc--CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHH
Q 005282          120 KECAFALGLLA--VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPP  197 (704)
Q Consensus       120 ~~a~~~L~~l~--~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~  197 (704)
                      .-++-+|+.++  ..|.....+-  .++.+|.+=.+.+..        .....-+.+++.++.....-........++-.
T Consensus       571 ~itAlalsalaeaa~Pygie~fD--sVlkpLwkgir~hrg--------k~laafLkAigyliplmd~eya~yyTrevmli  640 (1172)
T KOG0213|consen  571 TITALALSALAEAATPYGIEQFD--SVLKPLWKGIRQHRG--------KELAAFLKAIGYLIPLMDAEYASYYTREVMLI  640 (1172)
T ss_pred             hHHHHHHHHHHHhcCCcchHHHH--HHHHHHHHHHHHccC--------hHHHHHHHHHhhccccccHHHHHHhHHHHHHH
Confidence            88888888888  3443322221  234455555555544        55566677788887544443333444455566


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHH-----HHHHHHhcCChhhHHH
Q 005282          198 LVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAV-----GVIGNLVHSSPSIKKE  272 (704)
Q Consensus       198 L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~-----~~L~~l~~~~~~~~~~  272 (704)
                      +.+-..++|.+.++..+..+..+|. .+..-.......++|.+....-.     ++.|+     .-+...+   .+..+.
T Consensus       641 l~rEf~sPDeemkkivLKVv~qcc~-t~Gv~~~y~r~dilp~ff~~fw~-----rrmA~drr~ykqlv~tt---v~ia~K  711 (1172)
T KOG0213|consen  641 LIREFGSPDEEMKKIVLKVVKQCCA-TDGVEPAYIRFDILPEFFFSFWG-----RRMALDRRNYKQLVDTT---VEIAAK  711 (1172)
T ss_pred             HHHhhCCChHHHHHHHHHHHHHHhc-ccCCCHHHHhhhhhHHHHhhhhh-----hhhhccccchhhHHHHH---HHHHHH
Confidence            6677779999999999999999995 44444445555666766654321     22221     0111110   111111


Q ss_pred             HHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccC-CcchHHHHhcCChHHHHHhhCCCC--HHHHHHHHHHHHHhhcC
Q 005282          273 VILAGALQPVIGLLSSSCSESKREAALLLGQFAAAD-SNSKVHIVQRGAVRPLIEMLQSPD--SQLKEMSAFALGRLAQD  349 (704)
Q Consensus       273 ~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~ll~~~~--~~v~~~a~~~L~~l~~~  349 (704)
                      +.....+..++.=+.+..+.-+...+.++.++...- ......-.+...+..++..++.++  ..+.-....++.|-...
T Consensus       712 vG~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~  791 (1172)
T KOG0213|consen  712 VGSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGG  791 (1172)
T ss_pred             hCchHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhh
Confidence            222223455555566777777777777766654321 112222233445666666666543  23333444444442221


Q ss_pred             CchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcccCCchh---hHHHhhCCcccccccccccccchHHHHHHHHH
Q 005282          350 THNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNV---ADLVRVGGVQKLQDGEFTVQPTKDCVARTLKR  426 (704)
Q Consensus       350 ~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~---~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~  426 (704)
                         +.+-.-...+..++..|+++.+.+|..|+..+..++---..+   +.+...|.                        
T Consensus       792 ---r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv------------------------  844 (1172)
T KOG0213|consen  792 ---RVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV------------------------  844 (1172)
T ss_pred             ---ccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH------------------------
Confidence               111111223455677889999999999999999886421111   12222222                        


Q ss_pred             HHHHhhcchhHHHHHHHhhccHHHHHHHHHHHHhccCC-CccceeeecCCcHHHHHHHHhhcchhhhhhHHHHHHHHhhh
Q 005282          427 LEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAP-DDCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLATK  505 (704)
Q Consensus       427 ~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~  505 (704)
                                 .|...+....+++.-..+.+|..+.+. ...+..-.-.+.+|.|.-.|.+.+..++..+...+..++..
T Consensus       845 -----------vLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~Iadr  913 (1172)
T KOG0213|consen  845 -----------VLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADR  913 (1172)
T ss_pred             -----------HHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhc
Confidence                       255667778888888877777777442 22222223357899999999999999999999999999988


Q ss_pred             cCCC
Q 005282          506 ATSL  509 (704)
Q Consensus       506 ~~~~  509 (704)
                      .+.+
T Consensus       914 gpE~  917 (1172)
T KOG0213|consen  914 GPEY  917 (1172)
T ss_pred             Cccc
Confidence            7643

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=98.49  E-value=6.6e-05  Score=80.83  Aligned_cols=435  Identities=15%  Similarity=0.105  Sum_probs=235.3

Q ss_pred             hhHHHHHHHHHHHHhhhccCCchhhHHHHHHHHHHHHHhhcC-hhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHH
Q 005282           40 QQDLVQDIRAQIDILNSKFSSDETDRAAAKTASHALVEFAKN-EEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEV  118 (704)
Q Consensus        40 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v  118 (704)
                      .-.+.+.++.+++.+..-+..++-.  .+..++..|..+... |..-.. .....+|.+...|.+.++        ....
T Consensus       426 ~~~L~~~~~~iVkai~~qlr~ks~k--t~~~cf~lL~eli~~lp~~l~~-~~~slvpgI~~~l~DkSs--------ss~~  494 (1233)
T KOG1824|consen  426 LSMLSDQVPLIVKAIQKQLREKSVK--TRQGCFLLLTELINVLPGALAQ-HIPSLVPGIIYSLNDKSS--------SSNL  494 (1233)
T ss_pred             hHHHHhhhHHHHHHHHHHHhhcccc--chhhHHHHHHHHHHhCcchhhh-cccccchhhhhhcCCccc--------hHHH
Confidence            3556777888888887776543333  455556666666542 221111 123567888888877766        3467


Q ss_pred             HHHHHHHHHhhc--CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhh--hhhcc--
Q 005282          119 EKECAFALGLLA--VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKT--RVRVE--  192 (704)
Q Consensus       119 ~~~a~~~L~~l~--~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~--~~~~~--  192 (704)
                      +..+...+.++.  ..|+.-     +..++.+...+...-.++.    ..+-..|+.....++.--.+...  .+-..  
T Consensus       495 ki~~L~fl~~~L~s~~p~~f-----hp~~~~Ls~~v~~aV~d~f----yKisaEAL~v~~~lvkvirpl~~~~~~d~~~~  565 (1233)
T KOG1824|consen  495 KIDALVFLYSALISHPPEVF-----HPHLSALSPPVVAAVGDPF----YKISAEALLVCQQLVKVIRPLQPPSSFDASPY  565 (1233)
T ss_pred             HHHHHHHHHHHHhcCChhhc-----ccchhhhhhHHHHHhcCch----HhhhHHHHHHHHHHHHHhcccCCCccCCCChh
Confidence            888888887776  333321     2334444444433222211    15555666666666521110000  00011  


Q ss_pred             --CCcHHHHHHhc--CCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh
Q 005282          193 --DGIPPLVELLK--FVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPS  268 (704)
Q Consensus       193 --~~i~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~  268 (704)
                        ..+...++.|.  ..|.++++.|+.+++.+...-. .....--...++.+++-|  .++-.|..|++++..++...-.
T Consensus       566 v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fg-D~l~~eL~~~L~il~eRl--~nEiTRl~AvkAlt~Ia~S~l~  642 (1233)
T KOG1824|consen  566 VKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFG-DFLGNELPRTLPILLERL--GNEITRLTAVKALTLIAMSPLD  642 (1233)
T ss_pred             HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHh-hhhhhhhHHHHHHHHHHH--hchhHHHHHHHHHHHHHhccce
Confidence              11223334444  4678999999999999864211 111111122455555555  5677889999999999866322


Q ss_pred             hHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 005282          269 IKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQ  348 (704)
Q Consensus       269 ~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~  348 (704)
                      ....-.-..+++.+...+.......+.....++..+..........-.-.-++..+..++...+-.+-..|...|..+..
T Consensus       643 i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~  722 (1233)
T KOG1824|consen  643 IDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISESDLHVTQLAVAFLTTLAI  722 (1233)
T ss_pred             eehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHh
Confidence            22122223467777777766555556566666655554332222222223356666677777888888999999999998


Q ss_pred             CCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHH----ccc-CCchhhHH--Hh---hCCcccccccccccccchH
Q 005282          349 DTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYG----LAD-NEDNVADL--VR---VGGVQKLQDGEFTVQPTKD  418 (704)
Q Consensus       349 ~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~----l~~-~~~~~~~l--~~---~g~i~~l~~~~~~~~~~~~  418 (704)
                      .......-.....++.++.+++++  -++..|..++.+    +.. ..+....+  ..   .-..+...++..+  ....
T Consensus       723 ~~ps~l~~~~~~iL~~ii~ll~Sp--llqg~al~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~~~~~~l~k--qa~~  798 (1233)
T KOG1824|consen  723 IQPSSLLKISNPILDEIIRLLRSP--LLQGGALSALLLFFQALVITKEPDLDYISLLSLLTAPVYEQVTDGLHK--QAYY  798 (1233)
T ss_pred             cccHHHHHHhhhhHHHHHHHhhCc--cccchHHHHHHHHHHHHHhcCCCCccHHHHHHHHcCCcccccccchhH--HHHH
Confidence            877766666667788899998864  333344333322    222 22222211  11   1111111110000  1112


Q ss_pred             HHHHHHHHHHHHh---hcchhHHHHHHHh--hccHHHHHHHHHHHHhccCCCccceeeecCCcHHHHHHHHhhcchhhhh
Q 005282          419 CVARTLKRLEEKV---HGRVLNHLLYLLR--VADRAVKRRVTLALAHLCAPDDCKTIFIDNNGLELLLGLLESTSVKQRE  493 (704)
Q Consensus       419 ~~~~~~~~~~~~~---~~~~~~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~  493 (704)
                      +++.....+....   ...+...+..=+.  ..+..++..|...++.+.+..+.-.   ..+--..+++.+++.+.+++.
T Consensus       799 siA~cvA~Lt~~~~~~s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~---~~e~~~~iieaf~sp~edvks  875 (1233)
T KOG1824|consen  799 SIAKCVAALTCACPQKSKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLSP---QNELKDTIIEAFNSPSEDVKS  875 (1233)
T ss_pred             HHHHHHHHHHHhccccchhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCCc---chhhHHHHHHHcCCChHHHHH
Confidence            2332222222221   1112223333333  2456788888999998855432221   122334678888899999999


Q ss_pred             hHHHHHHHHhh
Q 005282          494 ESSVALYKLAT  504 (704)
Q Consensus       494 ~a~~~L~~L~~  504 (704)
                      +|+.||++++.
T Consensus       876 AAs~ALGsl~v  886 (1233)
T KOG1824|consen  876 AASYALGSLAV  886 (1233)
T ss_pred             HHHHHhhhhhc
Confidence            99999999887

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.46  E-value=0.00078  Score=71.84  Aligned_cols=309  Identities=17%  Similarity=0.180  Sum_probs=200.3

Q ss_pred             HHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcH
Q 005282          117 EVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIP  196 (704)
Q Consensus       117 ~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~  196 (704)
                      -+.-.|+.+|++++..+-.|      ...|.+-++++..++        -++..|+.|...+....|+..+     .+++
T Consensus       122 ~vVglAL~alg~i~s~Emar------dlapeVe~Ll~~~~~--------~irKKA~Lca~r~irK~P~l~e-----~f~~  182 (866)
T KOG1062|consen  122 YVVGLALCALGNICSPEMAR------DLAPEVERLLQHRDP--------YIRKKAALCAVRFIRKVPDLVE-----HFVI  182 (866)
T ss_pred             eehHHHHHHhhccCCHHHhH------HhhHHHHHHHhCCCH--------HHHHHHHHHHHHHHHcCchHHH-----HhhH
Confidence            57778888888888544343      235777888888665        8999999999999877776544     4567


Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhc----C-----------CCHHHHHHHHHHHHH
Q 005282          197 PLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLR----S-----------EDASVHFEAVGVIGN  261 (704)
Q Consensus       197 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~----~-----------~~~~v~~~a~~~L~~  261 (704)
                      ....+|.+.+..|...++..+..+|..+++....+.+  .++-++..|+    .           ++|-++..+++.|.-
T Consensus       183 ~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLri  260 (866)
T KOG1062|consen  183 AFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRI  260 (866)
T ss_pred             HHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHH
Confidence            7778888888889999999999998877766666655  4555665554    1           357788888988888


Q ss_pred             HhcCChhhHHHHHHcCCHHHHHHHhcCC------ChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHH
Q 005282          262 LVHSSPSIKKEVILAGALQPVIGLLSSS------CSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQL  335 (704)
Q Consensus       262 l~~~~~~~~~~~~~~~~l~~L~~ll~~~------~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v  335 (704)
                      +-++++.....+.     ..|-.+....      ...+..+++.++..+-.   +....+   -++..|-++|.+.+..+
T Consensus       261 LGq~d~daSd~M~-----DiLaqvatntdsskN~GnAILYE~V~TI~~I~~---~~~Lrv---lainiLgkFL~n~d~Ni  329 (866)
T KOG1062|consen  261 LGQNDADASDLMN-----DILAQVATNTDSSKNAGNAILYECVRTIMDIRS---NSGLRV---LAINILGKFLLNRDNNI  329 (866)
T ss_pred             hcCCCccHHHHHH-----HHHHHHHhcccccccchhHHHHHHHHHHHhccC---CchHHH---HHHHHHHHHhcCCccce
Confidence            8877665544332     2233333321      12334455555554421   111111   14666777777777778


Q ss_pred             HHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcccCCchhhHHHhhCCccccccccccccc
Q 005282          336 KEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQP  415 (704)
Q Consensus       336 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~  415 (704)
                      |..|+.+|......+++..+-.    -..++.+|++.|..+++.|...+..|.. ..|.+.+++                
T Consensus       330 rYvaLn~L~r~V~~d~~avqrH----r~tIleCL~DpD~SIkrralELs~~lvn-~~Nv~~mv~----------------  388 (866)
T KOG1062|consen  330 RYVALNMLLRVVQQDPTAVQRH----RSTILECLKDPDVSIKRRALELSYALVN-ESNVRVMVK----------------  388 (866)
T ss_pred             eeeehhhHHhhhcCCcHHHHHH----HHHHHHHhcCCcHHHHHHHHHHHHHHhc-cccHHHHHH----------------
Confidence            8888888877776554432211    1357899999999999999998888853 334444433                


Q ss_pred             chHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHHHHHHHHhccC-CCccceeeecCCcHHHHHHHHhhcchhhhhh
Q 005282          416 TKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCA-PDDCKTIFIDNNGLELLLGLLESTSVKQREE  494 (704)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~  494 (704)
                                            .|+.+|...+++.+..++.-+..++. ..+.+...     |+.+.+.+.....-++..
T Consensus       389 ----------------------eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~-----idtml~Vl~~aG~~V~~d  441 (866)
T KOG1062|consen  389 ----------------------ELLEFLESSDEDFKADIASKIAELAEKFAPDKRWH-----IDTMLKVLKTAGDFVNDD  441 (866)
T ss_pred             ----------------------HHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhH-----HHHHHHHHHhcccccchh
Confidence                                  47778888888888888888888854 22222222     344455554444444445


Q ss_pred             HHHHHHHHhhh
Q 005282          495 SSVALYKLATK  505 (704)
Q Consensus       495 a~~~L~~L~~~  505 (704)
                      +...+..|..+
T Consensus       442 v~~nll~LIa~  452 (866)
T KOG1062|consen  442 VVNNLLRLIAN  452 (866)
T ss_pred             hHHHHHHHHhc
Confidence            55555544443

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=98.45  E-value=1.6e-06  Score=86.99  Aligned_cols=328  Identities=12%  Similarity=0.114  Sum_probs=211.8

Q ss_pred             hhhHHHHHHHHHHHHhhhccC---CchhhHHHHHHHHHHHHHhhcC-hhHHHHHHhCCChHHHHhhccCCCcCCCCCCCC
Q 005282           39 TQQDLVQDIRAQIDILNSKFS---SDETDRAAAKTASHALVEFAKN-EEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPY  114 (704)
Q Consensus        39 ~~~~~~~~~~~l~~~l~~~~~---~~~~~~~~~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~  114 (704)
                      .++++..+-..+++......+   ...++...-..++..|.++++. .-.|.-+.+..+.+.|+++|..+..        
T Consensus       374 ~nq~fI~a~~~~~e~~t~~~~~~vn~~~d~l~~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Pei--------  445 (743)
T COG5369         374 ENQRFIAARSKMIESVTGTFKTKVNRKQDDLDFVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEI--------  445 (743)
T ss_pred             hhhhhhHHHHHHHHhhhhhhhccCCccchHHHHHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccc--------
Confidence            346666666777776654332   1122222334456667777774 5677778889999999999999754        


Q ss_pred             chHHHHHHHHHHHhhc-CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChh-hhhhhhcc
Q 005282          115 EHEVEKECAFALGLLA-VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENAN-IKTRVRVE  192 (704)
Q Consensus       115 d~~v~~~a~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~  192 (704)
                        -+.-.+...++|.. .-+..+..+.+.|.+..|++++.+.++        .++....|.+.++..+..+ .+-.+...
T Consensus       446 --mi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDd--------aLqans~wvlrHlmyncq~~ekf~~Lak  515 (743)
T COG5369         446 --MIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDD--------ALQANSEWVLRHLMYNCQKNEKFKFLAK  515 (743)
T ss_pred             --eeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchh--------hhhhcchhhhhhhhhcCcchhhhhhHHh
Confidence              56667788888888 777889999999999999999986654        8999999999999854433 34567788


Q ss_pred             CCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCch---hhHHhHhcC----ChHHHHHhhcCCCHHHHHHHHHHHHHHhcC
Q 005282          193 DGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDE---NKKLIVECN----ALPTLVLMLRSEDASVHFEAVGVIGNLVHS  265 (704)
Q Consensus       193 ~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~---~~~~~~~~~----~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~  265 (704)
                      -++..++.+.++++..++..++..++|+..+...   ....+....    ....+++.++..+|-.....+..|.+++..
T Consensus       516 ig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~~~~yilv~~aa~  595 (743)
T COG5369         516 IGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEILEGCYILVRNAAC  595 (743)
T ss_pred             cCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHhc
Confidence            8999999999999999999999999999864333   222222221    345566777778888888889999999988


Q ss_pred             ChhhHHHHHH-cCCHHHHHHHhcCCC-----------hhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhh---CC
Q 005282          266 SPSIKKEVIL-AGALQPVIGLLSSSC-----------SESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEML---QS  330 (704)
Q Consensus       266 ~~~~~~~~~~-~~~l~~L~~ll~~~~-----------~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll---~~  330 (704)
                      ++.....+.. ...+..+..+|....           ..+...-.....++..........+...   |.+=.+=   ..
T Consensus       596 d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~l~e~~d~f~r~~~~~---p~~D~~~~d~~~  672 (743)
T COG5369         596 DDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVNLSENSDKFKRLVLTT---PHLDNMKKDSTT  672 (743)
T ss_pred             cchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeecccccccccccceecC---CCccccccccCC
Confidence            8777776664 345555555542110           1111111111112211111111111100   1111111   12


Q ss_pred             CCHHHHHHHHHHHHHhhcCC---c------hhhhHHhh-CChHHHHHhhcCCChhHHHHHHHHHHHc
Q 005282          331 PDSQLKEMSAFALGRLAQDT---H------NQAGIAQD-GGILPLLKLLDSKNGSLQHNAAFALYGL  387 (704)
Q Consensus       331 ~~~~v~~~a~~~L~~l~~~~---~------~~~~~~~~-~~~~~L~~ll~~~~~~v~~~a~~~L~~l  387 (704)
                      ++.+.-.+..|.+.|+.-..   +      .|..+..+ |.-+.+..+..+.++.|++.+..+|.++
T Consensus       673 ~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~~Sl~vrek~~taL~~l  739 (743)
T COG5369         673 RNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQAKDSLIVREKIGTALENL  739 (743)
T ss_pred             CchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHhccCcHHHHHHHHHHHHhh
Confidence            34567777788887865321   1      33445545 4445566666777889999999999887

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.39  E-value=2.5e-05  Score=82.84  Aligned_cols=384  Identities=18%  Similarity=0.160  Sum_probs=237.5

Q ss_pred             HHHHHH-HHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHHHHHcCCc
Q 005282           68 AKTASH-ALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQIIVDTGAL  145 (704)
Q Consensus        68 ~~~a~~-~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~~~~g~l  145 (704)
                      +..|.+ ++..+..+.+..      +..+.++...+..+-          +++..+---+.+.+ ..|+...     +++
T Consensus        30 r~~a~kkvIa~Mt~G~DvS------slF~dvvk~~~T~dl----------elKKlvyLYl~nYa~~~P~~a~-----~av   88 (734)
T KOG1061|consen   30 RKDAVKKVIAYMTVGKDVS------SLFPDVVKCMQTRDL----------ELKKLVYLYLMNYAKGKPDLAI-----LAV   88 (734)
T ss_pred             HHHHHHHHHhcCccCcchH------hhhHHHHhhcccCCc----------hHHHHHHHHHHHhhccCchHHH-----hhh
Confidence            444443 444555565543      345888888888865          78888888888888 6665421     233


Q ss_pred             HHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCc
Q 005282          146 PHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKND  225 (704)
Q Consensus       146 ~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~  225 (704)
                      ..   ++++..+.     .|.++..|++.++.+-.  +..     ......+|...+++.++.+|..+.-+..++-.   
T Consensus        89 nt---~~kD~~d~-----np~iR~lAlrtm~~l~v--~~i-----~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~---  150 (734)
T KOG1061|consen   89 NT---FLKDCEDP-----NPLIRALALRTMGCLRV--DKI-----TEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFD---  150 (734)
T ss_pred             hh---hhccCCCC-----CHHHHHHHhhceeeEee--hHH-----HHHHHHHHHHhccCCChhHHHHHHHHHHHhhc---
Confidence            33   33433321     23777777766666542  111     12346789999999999999999999998864   


Q ss_pred             hhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHh
Q 005282          226 ENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFA  305 (704)
Q Consensus       226 ~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~  305 (704)
                      .+.+.....|.++.|..++.++++.|...|+.+|..+...++...........+..++..+...+..-+.....++.+..
T Consensus       151 ~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~  230 (734)
T KOG1061|consen  151 IDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYV  230 (734)
T ss_pred             CChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcC
Confidence            44566778899999999999999999999999999998766532222222334455555555554444555555555543


Q ss_pred             ccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHH
Q 005282          306 AADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALY  385 (704)
Q Consensus       306 ~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~  385 (704)
                      ..+....     ..+++.+...+++.++.+.-.+...+.++...............-++++.++.+.. +++..++.=+.
T Consensus       231 p~d~~ea-----~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~  304 (734)
T KOG1061|consen  231 PKDSREA-----EDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSES-EIQYVALRNIN  304 (734)
T ss_pred             CCCchhH-----HHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecccc-hhhHHHHhhHH
Confidence            3222111     23567777778887777777778888777765444333444445566777776655 66665555443


Q ss_pred             Hccc-CCchhhHHHhhCCccccc---ccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHHHHHHHHhc
Q 005282          386 GLAD-NEDNVADLVRVGGVQKLQ---DGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHL  461 (704)
Q Consensus       386 ~l~~-~~~~~~~l~~~g~i~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l  461 (704)
                      -+.. .|+    +.....-..+.   +..+......+|+......   .+...++..+......-+.+.-..+.++|+++
T Consensus       305 lil~~~p~----~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~---~nl~qvl~El~eYatevD~~fvrkaIraig~~  377 (734)
T KOG1061|consen  305 LILQKRPE----ILKVEIKVFFCKYNDPIYVKLEKLEILIELAND---ANLAQVLAELKEYATEVDVDFVRKAVRAIGRL  377 (734)
T ss_pred             HHHHhChH----HHHhHhHeeeeecCCchhhHHHHHHHHHHHhhH---hHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhh
Confidence            3332 222    22211111111   1122122223333222111   11122556667777778899999999999999


Q ss_pred             cCCCccceeeecCCcHHHHHHHHhhcchhhhhhHHHHHHHHhhhcCC
Q 005282          462 CAPDDCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLATKATS  508 (704)
Q Consensus       462 ~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~~  508 (704)
                      +.-.+..     ++.+..|+++++..-.-+...+...+..+-++.|+
T Consensus       378 aik~e~~-----~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~  419 (734)
T KOG1061|consen  378 AIKAEQS-----NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPN  419 (734)
T ss_pred             hhhhhhh-----hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCC
Confidence            6543222     67899999999976666667888899999887763

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.39  E-value=6.3e-05  Score=78.66  Aligned_cols=224  Identities=21%  Similarity=0.269  Sum_probs=163.3

Q ss_pred             HHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCc
Q 005282          146 PHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKND  225 (704)
Q Consensus       146 ~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~  225 (704)
                      +-++.+|.+..+        -++..|...+..++..-|+.-.     ..+|.|..-|.++||.++.+|..+++.|+..+|
T Consensus       147 ~Dv~tLL~sskp--------YvRKkAIl~lykvFLkYPeAlr-----~~FprL~EkLeDpDp~V~SAAV~VICELArKnP  213 (877)
T KOG1059|consen  147 DDVFTLLNSSKP--------YVRKKAILLLYKVFLKYPEALR-----PCFPRLVEKLEDPDPSVVSAAVSVICELARKNP  213 (877)
T ss_pred             HHHHHHHhcCch--------HHHHHHHHHHHHHHHhhhHhHh-----hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCC
Confidence            556777777765        8999999999999966665422     568999999999999999999999999999888


Q ss_pred             hhhHHhHhcCChHHHHHhhc-CCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCCh-hHHHHHHHHHH-
Q 005282          226 ENKKLIVECNALPTLVLMLR-SEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCS-ESKREAALLLG-  302 (704)
Q Consensus       226 ~~~~~~~~~~~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~-~~~~~a~~~L~-  302 (704)
                      .+.-.+     -|.+.++|. +.+-.+....+..+++|+.-.|...     ...+++|..++.+... ++..+|+.++- 
T Consensus       214 knyL~L-----AP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLg-----KKLieplt~li~sT~AmSLlYECvNTVVa  283 (877)
T KOG1059|consen  214 QNYLQL-----APLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLG-----KKLIEPITELMESTVAMSLLYECVNTVVA  283 (877)
T ss_pred             cccccc-----cHHHHHHHhccCCCeehHHHHHHHhhccccCchhh-----hhhhhHHHHHHHhhHHHHHHHHHHHHhee
Confidence            776544     478888886 5677888899999999986655433     3578889998876543 33444544332 


Q ss_pred             -HHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHH
Q 005282          303 -QFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAA  381 (704)
Q Consensus       303 -~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~  381 (704)
                       ++..+.++.-..+  .-.++.|-.++.+.|+.++..++.+++.+.........    ..-+.++++|.+.|+++|-.|+
T Consensus       284 ~s~s~g~~d~~asi--qLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vq----a~kdlIlrcL~DkD~SIRlrAL  357 (877)
T KOG1059|consen  284 VSMSSGMSDHSASI--QLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQ----AHKDLILRCLDDKDESIRLRAL  357 (877)
T ss_pred             ehhccCCCCcHHHH--HHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHH----HhHHHHHHHhccCCchhHHHHH
Confidence             4444433332222  12577888888899999999999999999865432211    1235688999999999999999


Q ss_pred             HHHHHcccCCchhhHHHh
Q 005282          382 FALYGLADNEDNVADLVR  399 (704)
Q Consensus       382 ~~L~~l~~~~~~~~~l~~  399 (704)
                      ..|..+.. .+|...|++
T Consensus       358 dLl~gmVs-kkNl~eIVk  374 (877)
T KOG1059|consen  358 DLLYGMVS-KKNLMEIVK  374 (877)
T ss_pred             HHHHHHhh-hhhHHHHHH
Confidence            99998864 333444433

>TIGR02270 conserved hypothetical protein

Probab=98.38  E-value=7.3e-05  Score=77.04  Aligned_cols=240  Identities=17%  Similarity=0.059  Sum_probs=169.0

Q ss_pred             CCcHHHHHHhc-CCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHH
Q 005282          193 DGIPPLVELLK-FVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKK  271 (704)
Q Consensus       193 ~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~  271 (704)
                      .+++.++..+. .+++++...++.++....  .+         ..+..|+..|.+.++.++..++.+|+.+-.       
T Consensus        54 ~a~~~L~~aL~~d~~~ev~~~aa~al~~~~--~~---------~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~-------  115 (410)
T TIGR02270        54 AATELLVSALAEADEPGRVACAALALLAQE--DA---------LDLRSVLAVLQAGPEGLCAGIQAALGWLGG-------  115 (410)
T ss_pred             hHHHHHHHHHhhCCChhHHHHHHHHHhccC--Ch---------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCc-------
Confidence            45777888884 566777766555554322  11         137889999999999999999999986631       


Q ss_pred             HHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCc
Q 005282          272 EVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTH  351 (704)
Q Consensus       272 ~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  351 (704)
                          .+..+.|..++.+.++.++..++.++....            ....+.+..++++.++.++..|+.+|+.+...  
T Consensus       116 ----~~a~~~L~~~L~~~~p~vR~aal~al~~r~------------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~--  177 (410)
T TIGR02270       116 ----RQAEPWLEPLLAASEPPGRAIGLAALGAHR------------HDPGPALEAALTHEDALVRAAALRALGELPRR--  177 (410)
T ss_pred             ----hHHHHHHHHHhcCCChHHHHHHHHHHHhhc------------cChHHHHHHHhcCCCHHHHHHHHHHHHhhccc--
Confidence                235678889999999999988887776621            22467899999999999999999999987653  


Q ss_pred             hhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcccCCchhhHHHh----hCCcccccccccccccchHHHHHHHHHH
Q 005282          352 NQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADLVR----VGGVQKLQDGEFTVQPTKDCVARTLKRL  427 (704)
Q Consensus       352 ~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~----~g~i~~l~~~~~~~~~~~~~~~~~~~~~  427 (704)
                              ..++.|...+.+.++.|+..|+.++..+.. ++....+..    .|.-...            -....+...
T Consensus       178 --------~a~~~L~~al~d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~~~g~~~~~------------~l~~~lal~  236 (410)
T TIGR02270       178 --------LSESTLRLYLRDSDPEVRFAALEAGLLAGS-RLAWGVCRRFQVLEGGPHRQ------------RLLVLLAVA  236 (410)
T ss_pred             --------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHhccCccHHH------------HHHHHHHhC
Confidence                    345667788999999999999999988844 433333222    1211100            000001000


Q ss_pred             HHHhhcchhHHHHHHHhhccHHHHHHHHHHHHhccCCCccceeeecCCcHHHHHHHHhhcchhhhhhHHHHHHHHhhhc
Q 005282          428 EEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPDDCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLATKA  506 (704)
Q Consensus       428 ~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~  506 (704)
                         -....++.|..+++...  ++..++++++.+          .....++.|+..+...  .+++.|..++..++--.
T Consensus       237 ---~~~~a~~~L~~ll~d~~--vr~~a~~AlG~l----------g~p~av~~L~~~l~d~--~~aR~A~eA~~~ItG~~  298 (410)
T TIGR02270       237 ---GGPDAQAWLRELLQAAA--TRREALRAVGLV----------GDVEAAPWCLEAMREP--PWARLAGEAFSLITGMD  298 (410)
T ss_pred             ---CchhHHHHHHHHhcChh--hHHHHHHHHHHc----------CCcchHHHHHHHhcCc--HHHHHHHHHHHHhhCCC
Confidence               12246777888876654  899999999988          3456899999988644  39999999999887643

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.37  E-value=3.4e-06  Score=68.89  Aligned_cols=144  Identities=17%  Similarity=0.193  Sum_probs=116.8

Q ss_pred             CcHHHHHHhc-CCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHH
Q 005282          194 GIPPLVELLK-FVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKE  272 (704)
Q Consensus       194 ~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~  272 (704)
                      .++.|+.-.+ ..+.+.++....-|+|++. +|.+...+.+.+++..++..|..++....+.++..|+|+|.+ +...+.
T Consensus        17 Ylq~LV~efq~tt~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d-~~n~~~   94 (173)
T KOG4646|consen   17 YLQHLVDEFQTTTNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLD-KTNAKF   94 (173)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccC-hHHHHH
Confidence            3455555444 5688999999999999996 899999999999999999999999999999999999999976 777888


Q ss_pred             HHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHH
Q 005282          273 VILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMS  339 (704)
Q Consensus       273 ~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a  339 (704)
                      +.++++++.++..++++...+...++.++..++..+...+..+....++..+..+-.+.+...+..|
T Consensus        95 I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~~s~s~~~rnLa  161 (173)
T KOG4646|consen   95 IREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWRESKSHDERNLA  161 (173)
T ss_pred             HHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHHHHhhHHHHHHH
Confidence            9999999999999999988899999999999988777777777655555555554433333333333

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=98.36  E-value=0.00047  Score=65.57  Aligned_cols=302  Identities=14%  Similarity=0.159  Sum_probs=206.0

Q ss_pred             HHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHH--HHhhccCCCCCcc
Q 005282           86 SLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVS--LLKQYKNGGNSRA  163 (704)
Q Consensus        86 ~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~--lL~~~~~~~~~~~  163 (704)
                      ..+++.|+.+.++..+...+.          +|-..|...+..++..|..-..+.+.+....+-.  +--..++      
T Consensus       122 llvvNaeilklildcIggedd----------eVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakcnd------  185 (524)
T KOG4413|consen  122 LLVVNAEILKLILDCIGGEDD----------EVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKCND------  185 (524)
T ss_pred             HHHhhhhHHHHHHHHHcCCcH----------HHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhhhh------
Confidence            344588999999999988865          9999999999999988888888888877665432  2222222      


Q ss_pred             hhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcC-CCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHH
Q 005282          164 LSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKF-VDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVL  242 (704)
Q Consensus       164 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~  242 (704)
                        -.+......+..+..-++.........|.+..|..-++. .|.-++..++.....|+. ....++.+.+.|.++.+..
T Consensus       186 --iaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLae-teHgreflaQeglIdlicn  262 (524)
T KOG4413|consen  186 --IARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAE-TEHGREFLAQEGLIDLICN  262 (524)
T ss_pred             --HHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHH-HhhhhhhcchhhHHHHHHH
Confidence              566777777888877788888888889988888887775 777888889999999985 7788888899999999999


Q ss_pred             hhc--CCCHHHHHHHHHHHHHHhcCChhh----HHHHHH--cCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHH
Q 005282          243 MLR--SEDASVHFEAVGVIGNLVHSSPSI----KKEVIL--AGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVH  314 (704)
Q Consensus       243 lL~--~~~~~v~~~a~~~L~~l~~~~~~~----~~~~~~--~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~  314 (704)
                      ++.  +.+|--...++...+.+... ...    .+.+.+  .-+++...+.+...++..+..|+.+++.+-+ +.+..+.
T Consensus       263 IIsGadsdPfekfralmgfgkffgk-eaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGS-nteGadl  340 (524)
T KOG4413|consen  263 IISGADSDPFEKFRALMGFGKFFGK-EAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGS-NTEGADL  340 (524)
T ss_pred             HhhCCCCCcHHHHHHHHHHHHHhcc-hHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccC-CcchhHH
Confidence            886  45565555566666555422 111    111221  1234555666778889999999999998864 5566666


Q ss_pred             HHhcCC--hHHHHHhhCC-CCHHHHHHHHHHHHHhhcC---Cchh-----------hhHH----hh---CChHHHHHhhc
Q 005282          315 IVQRGA--VRPLIEMLQS-PDSQLKEMSAFALGRLAQD---THNQ-----------AGIA----QD---GGILPLLKLLD  370 (704)
Q Consensus       315 ~~~~~~--i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~---~~~~-----------~~~~----~~---~~~~~L~~ll~  370 (704)
                      +...|-  .+.++.-..+ ....-++.+..+|.+++..   .+++           ..+.    +.   .....+...++
T Consensus       341 llkTgppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilq  420 (524)
T KOG4413|consen  341 LLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQ  420 (524)
T ss_pred             HhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHc
Confidence            665543  3333333322 2223345667777777643   2211           0111    11   22334566677


Q ss_pred             CCChhHHHHHHHHHHHcccCCchhhHHHh-hCCcccccc
Q 005282          371 SKNGSLQHNAAFALYGLADNEDNVADLVR-VGGVQKLQD  408 (704)
Q Consensus       371 ~~~~~v~~~a~~~L~~l~~~~~~~~~l~~-~g~i~~l~~  408 (704)
                      ...++++..+..++..++..|=....+.. .|.+....+
T Consensus       421 QpfpEihcAalktfTAiaaqPWalkeifakeefieiVtD  459 (524)
T KOG4413|consen  421 QPFPEIHCAALKTFTAIAAQPWALKEIFAKEEFIEIVTD  459 (524)
T ss_pred             CCChhhHHHHHHHHHHHHcCcHHHHHHhcCccceeeecc
Confidence            77899999999999999988876655544 566666554

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=98.35  E-value=3e-05  Score=81.11  Aligned_cols=264  Identities=16%  Similarity=0.112  Sum_probs=165.4

Q ss_pred             hHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHH--HHHHcCCcHHHHHHHhhccCCCCCcchhHHHHH
Q 005282           94 VPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQ--IIVDTGALPHLVSLLKQYKNGGNSRALSGVIRR  170 (704)
Q Consensus        94 i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~--~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~  170 (704)
                      +...+..|.+.++          .+|.+|+..++.++ --..+.+  .+...|+  .|...|-...        +++.-.
T Consensus       801 ~stiL~rLnnksa----------~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylgeey--------pEvLgs  860 (1172)
T KOG0213|consen  801 CSTILWRLNNKSA----------KVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLGEEY--------PEVLGS  860 (1172)
T ss_pred             HHHHHHHhcCCCh----------hHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcCccc--------HHHHHH
Confidence            4455666777765          89999999999888 2222211  2222232  3444444433        377777


Q ss_pred             HHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHH
Q 005282          171 AADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDAS  250 (704)
Q Consensus       171 a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~  250 (704)
                      .+.++..++.--.-.+..--..+.+|.|..+|++....++.+++..++.++...++....--...+.--|+++|.+-+.+
T Consensus       861 ILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~  940 (1172)
T KOG0213|consen  861 ILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKE  940 (1172)
T ss_pred             HHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHH
Confidence            77777766631111111122357899999999999999999999999999986665322211222344578888889999


Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCC
Q 005282          251 VHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQS  330 (704)
Q Consensus       251 v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~  330 (704)
                      +|+.|..+++.++..       +.-.+++..|+.-|...+-..+.....+++-.+..+..       -.++|.|+.=-..
T Consensus       941 iRRaa~nTfG~Iaka-------IGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~p-------FtVLPalmneYrt 1006 (1172)
T KOG0213|consen  941 IRRAAVNTFGYIAKA-------IGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGP-------FTVLPALMNEYRT 1006 (1172)
T ss_pred             HHHHHHhhhhHHHHh-------cCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCc-------hhhhHHHHhhccC
Confidence            999999999999743       22334455555555443332232222333322211101       1356666666667


Q ss_pred             CCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcccCC
Q 005282          331 PDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNE  391 (704)
Q Consensus       331 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  391 (704)
                      ++..|+..++.+++-+-..-.....-.-....+.|-+.|.+.+..-|..|..++.+++-+.
T Consensus      1007 Pe~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~ 1067 (1172)
T KOG0213|consen 1007 PEANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLALGV 1067 (1172)
T ss_pred             chhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhcCC
Confidence            8889999999999888754332222222234455667888889999999999999998643

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.32  E-value=4e-05  Score=72.26  Aligned_cols=244  Identities=18%  Similarity=0.172  Sum_probs=166.6

Q ss_pred             HHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhc-cCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCC
Q 005282          146 PHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRV-EDGIPPLVELLKFVDVKVQRAAAGALRTLAFKN  224 (704)
Q Consensus       146 ~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~  224 (704)
                      -.++.++.+.++        .++..|+.-+..++..  ..+..... ...++.+.+++....+  ...|+.++.|++. +
T Consensus         6 ~elv~ll~~~sP--------~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq-~   72 (353)
T KOG2973|consen    6 VELVELLHSLSP--------PVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQ-K   72 (353)
T ss_pred             HHHHHHhccCCh--------HHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHh-h
Confidence            356778887765        8999999999888864  33332222 2347778888887766  6788999999997 7


Q ss_pred             chhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHH------cCCHHHHHHHhcCCCh--hHHHH
Q 005282          225 DENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVIL------AGALQPVIGLLSSSCS--ESKRE  296 (704)
Q Consensus       225 ~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~------~~~l~~L~~ll~~~~~--~~~~~  296 (704)
                      +..+..+... .+..++..+.++........+.+|.|+++...........      .|.+.........+-.  .-...
T Consensus        73 ~~l~~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~y  151 (353)
T KOG2973|consen   73 EELRKKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHY  151 (353)
T ss_pred             HHHHHHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhH
Confidence            7777777766 8888888888887888899999999999886555444332      2334444444443322  22566


Q ss_pred             HHHHHHHHhccCCcchHHHHhcCC--hHHHHHhhCCCCHHHHH-HHHHHHHHhhcCCchhhhHHhhC--ChHHH------
Q 005282          297 AALLLGQFAAADSNSKVHIVQRGA--VRPLIEMLQSPDSQLKE-MSAFALGRLAQDTHNQAGIAQDG--GILPL------  365 (704)
Q Consensus       297 a~~~L~~l~~~~~~~~~~~~~~~~--i~~L~~ll~~~~~~v~~-~a~~~L~~l~~~~~~~~~~~~~~--~~~~L------  365 (704)
                      .+..+.|++. .+..+..+.....  .+.+.. +.+.+..+|. ..+++|.|+|.....+..+...+  .++.+      
T Consensus       152 lA~vf~nls~-~~~gR~l~~~~k~~p~~kll~-ft~~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlag  229 (353)
T KOG2973|consen  152 LAPVFANLSQ-FEAGRKLLLEPKRFPDQKLLP-FTSEDSQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAG  229 (353)
T ss_pred             HHHHHHHHhh-hhhhhhHhcchhhhhHhhhhc-ccccchhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCC
Confidence            7778888875 5555665655542  223333 3345555554 68899999998877766555421  12221      


Q ss_pred             ---------------HHhhc-----CCChhHHHHHHHHHHHcccCCchhhHHHhhCCccc
Q 005282          366 ---------------LKLLD-----SKNGSLQHNAAFALYGLADNEDNVADLVRVGGVQK  405 (704)
Q Consensus       366 ---------------~~ll~-----~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~g~i~~  405 (704)
                                     ++++.     .+++.+++.-+.+|..|+.....++.+...|+.+.
T Consensus       230 pee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe~lR~kgvYpi  289 (353)
T KOG2973|consen  230 PEELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGREVLRSKGVYPI  289 (353)
T ss_pred             ccccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhHHHHHhcCchHH
Confidence                           23332     35788999999999999999999999988777554

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=98.29  E-value=2.6e-05  Score=79.90  Aligned_cols=264  Identities=15%  Similarity=0.106  Sum_probs=168.5

Q ss_pred             ChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhh--HHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHH
Q 005282           93 AVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEH--QQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIR  169 (704)
Q Consensus        93 ~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~--~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~  169 (704)
                      ++...+.+|.+.++          ++|.+|+...+.|+ --..+  ...+...|.  .|..-|-...        +++.-
T Consensus       605 ivStiL~~L~~k~p----------~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lge~y--------pEvLg  664 (975)
T COG5181         605 IVSTILKLLRSKPP----------DVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLGEDY--------PEVLG  664 (975)
T ss_pred             HHHHHHHHhcCCCc----------cHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcCccc--------HHHHH
Confidence            46677888888876          89999999988888 22111  112222232  2233333222        37777


Q ss_pred             HHHHHHHHhhhcChhhh-hhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCC
Q 005282          170 RAADAITNLAHENANIK-TRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSED  248 (704)
Q Consensus       170 ~a~~~L~~l~~~~~~~~-~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~  248 (704)
                      ..+.++..+.. ....+ .+--..|++|.|..+|++....+..+.+..++.+|...++....--...+.--|++.|.+-+
T Consensus       665 sil~Ai~~I~s-v~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~n  743 (975)
T COG5181         665 SILKAICSIYS-VHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWN  743 (975)
T ss_pred             HHHHHHHHHhh-hhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhh
Confidence            77777777763 22221 12233688999999999999999999999999999877763322222233445788889999


Q ss_pred             HHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhh
Q 005282          249 ASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEML  328 (704)
Q Consensus       249 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll  328 (704)
                      .++|+.|..+++.++..       +.-.+++..|+.-|...+-..+.....+++-.+.....       -.++|.|+.=-
T Consensus       744 KeiRR~A~~tfG~Is~a-------iGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgp-------fsVlP~lm~dY  809 (975)
T COG5181         744 KEIRRNATETFGCISRA-------IGPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGP-------FSVLPTLMSDY  809 (975)
T ss_pred             HHHHHhhhhhhhhHHhh-------cCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCc-------hhhHHHHHhcc
Confidence            99999999999999743       22334555666655544333333333333333211100       13456666555


Q ss_pred             CCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcccCC
Q 005282          329 QSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNE  391 (704)
Q Consensus       329 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  391 (704)
                      ..++..++...+.+++-+-..-.....-.-....+.|-+.|.+.++.-|..|...+.+|+-+.
T Consensus       810 ~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc  872 (975)
T COG5181         810 ETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNC  872 (975)
T ss_pred             cCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCC
Confidence            667888999999998888755433322222234455667888889999999999999998653

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=98.27  E-value=0.00052  Score=69.96  Aligned_cols=316  Identities=14%  Similarity=0.097  Sum_probs=200.8

Q ss_pred             CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcC--CCHH
Q 005282          131 VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKF--VDVK  208 (704)
Q Consensus       131 ~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~  208 (704)
                      .+|+.+..+.-....+.+..++-++..        +++..+..++..+.. ++..-..+.+.+.--.++.-|..  .+..
T Consensus        13 ~~p~l~~~~~~~~~~~~i~~~lL~~~~--------~vraa~yRilRy~i~-d~~~l~~~~~l~id~~ii~SL~~~~~~~~   83 (371)
T PF14664_consen   13 RHPTLKYDLVLSFFGERIQCMLLSDSK--------EVRAAGYRILRYLIS-DEESLQILLKLHIDIFIIRSLDRDNKNDV   83 (371)
T ss_pred             hCchhhhhhhHHHHHHHHHHHHCCCcH--------HHHHHHHHHHHHHHc-CHHHHHHHHHcCCchhhHhhhcccCCChH
Confidence            444444443333344455544443334        999999999999986 45555557776766666666663  3456


Q ss_pred             HHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcC
Q 005282          209 VQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSS  288 (704)
Q Consensus       209 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~  288 (704)
                      -|+.|+..++.+..- +.... ....|++..++.+..+.++..+..|+.+|+.++-.+|+   .+...|++..|+..+.+
T Consensus        84 ER~QALkliR~~l~~-~~~~~-~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d  158 (371)
T PF14664_consen   84 EREQALKLIRAFLEI-KKGPK-EIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALID  158 (371)
T ss_pred             HHHHHHHHHHHHHHh-cCCcc-cCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHh
Confidence            688999999998753 22221 23556788999999999999999999999999987764   46689999999999987


Q ss_pred             CChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCC-------CH--HHHHHHHHHHHHhhcCCchhhhHHhh
Q 005282          289 SCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSP-------DS--QLKEMSAFALGRLAQDTHNQAGIAQD  359 (704)
Q Consensus       289 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-------~~--~v~~~a~~~L~~l~~~~~~~~~~~~~  359 (704)
                      +..++....+.++..+.. .+..+..+...--++.++.-+.+.       +.  +....+..++..+-..-.+--.+..+
T Consensus       159 ~~~~~~~~l~~~lL~lLd-~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~  237 (371)
T PF14664_consen  159 GSFSISESLLDTLLYLLD-SPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMN  237 (371)
T ss_pred             ccHhHHHHHHHHHHHHhC-CcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecC
Confidence            766788888888888874 555555454433455555544322       22  34556667777776665544443333


Q ss_pred             --CChHHHHHhhcCCChhHHHHHHHHHHHccc--CCchhhHH------HhhCCc---ccccc----ccccccc---chHH
Q 005282          360 --GGILPLLKLLDSKNGSLQHNAAFALYGLAD--NEDNVADL------VRVGGV---QKLQD----GEFTVQP---TKDC  419 (704)
Q Consensus       360 --~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~l------~~~g~i---~~l~~----~~~~~~~---~~~~  419 (704)
                        .++..|+..|..+++++|......+..+-.  .++-...+      ...|-.   ..+.+    .......   ....
T Consensus       238 ~~~~lksLv~~L~~p~~~ir~~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~  317 (371)
T PF14664_consen  238 DFRGLKSLVDSLRLPNPEIRKAILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPN  317 (371)
T ss_pred             CchHHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCcccccccc
Confidence              578889999999999999999999988865  22211111      111111   00000    0000000   0001


Q ss_pred             HHHHHHHH--HHHhhcchhHHHHHHHhhc-cHHHHHHHHHHHHhc
Q 005282          420 VARTLKRL--EEKVHGRVLNHLLYLLRVA-DRAVKRRVTLALAHL  461 (704)
Q Consensus       420 ~~~~~~~~--~~~~~~~~~~~L~~ll~~~-~~~v~~~a~~~L~~l  461 (704)
                      +.+....+  ...+..|+++.|+.+..+. ++.+...|...|+.+
T Consensus       318 l~~~y~aLll~ili~~gL~~~L~~li~~~~d~~l~~KAtlLL~el  362 (371)
T PF14664_consen  318 LVNHYLALLLAILIEAGLLEALVELIESSEDSSLSRKATLLLGEL  362 (371)
T ss_pred             HHHHHHHHHHHHHHHcChHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence            11111111  1223778999999999887 788888888888766

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.22  E-value=9.7e-06  Score=66.26  Aligned_cols=119  Identities=18%  Similarity=0.202  Sum_probs=103.8

Q ss_pred             HHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhc
Q 005282          166 GVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLR  245 (704)
Q Consensus       166 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~  245 (704)
                      +.+++...-|+|++. +|-+...+.+.+++...+..+..++..+.+.+++.|+|+|- ++.+.+.+.+.+++|.++..+.
T Consensus        32 eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~-d~~n~~~I~ea~g~plii~~ls  109 (173)
T KOG4646|consen   32 EAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCL-DKTNAKFIREALGLPLIIFVLS  109 (173)
T ss_pred             HHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhcc-ChHHHHHHHHhcCCceEEeecC
Confidence            788888889999997 67778889999999999999999999999999999999996 8899999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHh
Q 005282          246 SEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLL  286 (704)
Q Consensus       246 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll  286 (704)
                      ++...+...++.++..++......+..+....++..+..+-
T Consensus       110 sp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~  150 (173)
T KOG4646|consen  110 SPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWR  150 (173)
T ss_pred             CChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHH
Confidence            99999999999999999977666666666655555555444

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.22  E-value=0.00028  Score=76.79  Aligned_cols=285  Identities=17%  Similarity=0.203  Sum_probs=193.9

Q ss_pred             HHHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHcCCcH
Q 005282           67 AAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALP  146 (704)
Q Consensus        67 ~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~  146 (704)
                      ++.-++.++.....+.+....+...|.+..|+++|++.+           ..|..++.+|..|+++++......+.|++.
T Consensus      1788 iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~lLHS~P-----------S~R~~vL~vLYAL~S~~~i~keA~~hg~l~ 1856 (2235)
T KOG1789|consen 1788 LQILALQVILLATANKECVTDLATCNVLTTLLTLLHSQP-----------SMRARVLDVLYALSSNGQIGKEALEHGGLM 1856 (2235)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHHHHhcCh-----------HHHHHHHHHHHHHhcCcHHHHHHHhcCchh
Confidence            556677777777778888888999999999999999986           599999999999999999999999999999


Q ss_pred             HHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcC---hhhhhhhhc----------cCCcHHHHHHhcC--CCHH---
Q 005282          147 HLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHEN---ANIKTRVRV----------EDGIPPLVELLKF--VDVK---  208 (704)
Q Consensus       147 ~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~---~~~~~~~~~----------~~~i~~L~~ll~~--~~~~---  208 (704)
                      .+..++.....       +..+.+++..++.+..+.   |..+--+++          .+.-...+..+..  .+|+   
T Consensus      1857 yil~~~c~~~~-------~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiW 1929 (2235)
T KOG1789|consen 1857 YILSILCLTNS-------DQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSENPELIW 1929 (2235)
T ss_pred             hhhHHHhccCc-------HHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCCCccccc
Confidence            99988877665       378889999999987432   221111110          1111334444442  2332   


Q ss_pred             ---HHHHHHHHHHHhcc-------CCch-------------------------hhHHhHhcC------------ChHHHH
Q 005282          209 ---VQRAAAGALRTLAF-------KNDE-------------------------NKKLIVECN------------ALPTLV  241 (704)
Q Consensus       209 ---~~~~a~~~L~~l~~-------~~~~-------------------------~~~~~~~~~------------~i~~L~  241 (704)
                         .+......+..+..       +++.                         +|..+.+.+            .++.++
T Consensus      1930 n~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~l 2009 (2235)
T KOG1789|consen 1930 NEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVL 2009 (2235)
T ss_pred             CHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHH
Confidence               23333333333321       1110                         122222222            233334


Q ss_pred             HhhcCCC--HHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcC
Q 005282          242 LMLRSED--ASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRG  319 (704)
Q Consensus       242 ~lL~~~~--~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~  319 (704)
                      .++..++  .........++..+....|.....+-..|.+|.++..+...+..+-..|+++|..++. +.-+...+....
T Consensus      2010 elm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lse-n~~C~~AMA~l~ 2088 (2235)
T KOG1789|consen 2010 ELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSE-NQFCCDAMAQLP 2088 (2235)
T ss_pred             HHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhh-ccHHHHHHhccc
Confidence            4444332  2334444556666667778877777788999999999988878888999999999975 667777787778


Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCch--hhhHHhhCChHHHHHhhcC
Q 005282          320 AVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHN--QAGIAQDGGILPLLKLLDS  371 (704)
Q Consensus       320 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~--~~~~~~~~~~~~L~~ll~~  371 (704)
                      .+..++..++.... ....|+.+|..+......  -.+..+.|.++.|+++|..
T Consensus      2089 ~i~~~m~~mkK~~~-~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd~ 2141 (2235)
T KOG1789|consen 2089 CIDGIMKSMKKQPS-LMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLDS 2141 (2235)
T ss_pred             cchhhHHHHHhcch-HHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhcc
Confidence            88888888876544 335789999988863322  3456777999999999975

>TIGR02270 conserved hypothetical protein

Probab=98.21  E-value=0.00032  Score=72.38  Aligned_cols=211  Identities=22%  Similarity=0.122  Sum_probs=135.7

Q ss_pred             hHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHH
Q 005282           94 VPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAAD  173 (704)
Q Consensus        94 i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~  173 (704)
                      +..|+..|.+.+.          .++..++.+|+.+-.          .+..+.|+.+|++.+.        .++..++.
T Consensus        88 ~~~L~~~L~d~~~----------~vr~aaa~ALg~i~~----------~~a~~~L~~~L~~~~p--------~vR~aal~  139 (410)
T TIGR02270        88 LRSVLAVLQAGPE----------GLCAGIQAALGWLGG----------RQAEPWLEPLLAASEP--------PGRAIGLA  139 (410)
T ss_pred             HHHHHHHhcCCCH----------HHHHHHHHHHhcCCc----------hHHHHHHHHHhcCCCh--------HHHHHHHH
Confidence            6777777777654          688888888876552          2345677777766544        66666665


Q ss_pred             HHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHH
Q 005282          174 AITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHF  253 (704)
Q Consensus       174 ~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~  253 (704)
                      ++...-            ....+.+..+|++.++.++..|+.+|+.+..           ...++.|...+.+.++.||.
T Consensus       140 al~~r~------------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~-----------~~a~~~L~~al~d~~~~VR~  196 (410)
T TIGR02270       140 ALGAHR------------HDPGPALEAALTHEDALVRAAALRALGELPR-----------RLSESTLRLYLRDSDPEVRF  196 (410)
T ss_pred             HHHhhc------------cChHHHHHHHhcCCCHHHHHHHHHHHHhhcc-----------ccchHHHHHHHcCCCHHHHH
Confidence            555522            1234567777888888888888888887763           23455666777788888888


Q ss_pred             HHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCH
Q 005282          254 EAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDS  333 (704)
Q Consensus       254 ~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~  333 (704)
                      .|++++..+-.  +.         .+..+..+...........+..++...  ..         ...++.|..+++++. 
T Consensus       197 aA~~al~~lG~--~~---------A~~~l~~~~~~~g~~~~~~l~~~lal~--~~---------~~a~~~L~~ll~d~~-  253 (410)
T TIGR02270       197 AALEAGLLAGS--RL---------AWGVCRRFQVLEGGPHRQRLLVLLAVA--GG---------PDAQAWLRELLQAAA-  253 (410)
T ss_pred             HHHHHHHHcCC--Hh---------HHHHHHHHHhccCccHHHHHHHHHHhC--Cc---------hhHHHHHHHHhcChh-
Confidence            88888866631  21         233444433333333333333333322  11         146778888887754 


Q ss_pred             HHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcccCC
Q 005282          334 QLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNE  391 (704)
Q Consensus       334 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  391 (704)
                       ++..++.+++.+...          ..++.|+..+.+.  .++..|..++..+++-+
T Consensus       254 -vr~~a~~AlG~lg~p----------~av~~L~~~l~d~--~~aR~A~eA~~~ItG~~  298 (410)
T TIGR02270       254 -TRREALRAVGLVGDV----------EAAPWCLEAMREP--PWARLAGEAFSLITGMD  298 (410)
T ss_pred             -hHHHHHHHHHHcCCc----------chHHHHHHHhcCc--HHHHHHHHHHHHhhCCC
Confidence             888889998866543          3677888888643  49999999999998733

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.21  E-value=1.3e-06  Score=91.93  Aligned_cols=67  Identities=28%  Similarity=0.467  Sum_probs=55.8

Q ss_pred             CCcccEEEEEcCeEeehhHHHHhhcCHHHHHhhcCCCCCC------------CCCceEcCCCCHHHHHHHHHHHhcCcc
Q 005282          533 PTLSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEK------------NAKDVEIPNIRWNVFELMMRFIYTGNV  599 (704)
Q Consensus       533 ~~~~d~~~~~~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~------------~~~~i~l~~~~~~~~~~~l~~~Y~~~~  599 (704)
                      ..+.||+|.+|+.-|++||.||++||+|||.+|-...+.+            ...+|.+.++++..|+.+|+|+||+..
T Consensus       556 ds~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~p~mfe~lL~~iYtdt~  634 (1267)
T KOG0783|consen  556 DSFHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIPPLMFEILLHYIYTDTL  634 (1267)
T ss_pred             cccceEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeeccCCHHHHHHHHHHHhcccc
Confidence            3567999999999999999999999999999997543221            123566889999999999999999854

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.19  E-value=0.00082  Score=73.33  Aligned_cols=349  Identities=17%  Similarity=0.149  Sum_probs=210.1

Q ss_pred             HHHHHHHHHHHHHhhcChhHHHHHHhC-CChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHcC
Q 005282           65 RAAAKTASHALVEFAKNEEIVSLIVDN-GAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTG  143 (704)
Q Consensus        65 ~~~~~~a~~~L~~l~~~~~~~~~l~~~-g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g  143 (704)
                      ..++...++++.-.+.-++.+..+.+. .+|..++.++.-..-         |.+...|+.++..++.++..+-.+.++|
T Consensus      1454 v~vc~~v~~c~SVaaQFE~cR~~~~EmPSiI~Dl~r~l~f~~v---------Pr~~~aa~qci~~~aVd~~LQ~~LfqAG 1524 (2235)
T KOG1789|consen 1454 VRVCIHVCDCFSVAAQFEACRQRLMEMPSIIGDLTRLLQFSNL---------PRLSTAAAQCIRAMAVDTLLQFQLFQAG 1524 (2235)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccc---------cHHHHHHHHHHHHHhhhHHHHHHHHHhh
Confidence            335555666666566556666666654 778888888887764         4788999999999999999999999999


Q ss_pred             CcHHHHHHHhhccCCCCC------c------chhHHHHHHHHHHHHhhhc---------ChhhhhhhhccCCcHHHHHHh
Q 005282          144 ALPHLVSLLKQYKNGGNS------R------ALSGVIRRAADAITNLAHE---------NANIKTRVRVEDGIPPLVELL  202 (704)
Q Consensus       144 ~l~~L~~lL~~~~~~~~~------~------~~~~~~~~a~~~L~~l~~~---------~~~~~~~~~~~~~i~~L~~ll  202 (704)
                      ++=.|+.+|-..+.+...      .      ...+....++.+|+.+.+.         ++..+. ....-.-|.+...|
T Consensus      1525 ~LWYlLp~Lf~YDyTlEESg~q~Se~~n~Q~~aNslA~~s~~ALSRL~G~~AdE~~TP~N~T~~~-sL~alLTPyiAr~L 1603 (2235)
T KOG1789|consen 1525 VLWYLLPHLFHYDYTLEESGVQHSEDSNKQSLANSLARSSCEALSRLAGFRADEENTPDNDTVQA-SLRALLTPYIARCL 1603 (2235)
T ss_pred             hHHHHHHHHhcccccccccCccccccchHHHHHHHHHHHHHHHHHHHhccccccccCCCChhHHH-HHHHhccHHHHHHH
Confidence            999999988664432211      0      0225566777888887631         111111 11111223333333


Q ss_pred             cCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcC------------------------------------
Q 005282          203 KFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRS------------------------------------  246 (704)
Q Consensus       203 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~------------------------------------  246 (704)
                      +..      .+-..|..|-. +-++-..+...+.-..|+.++.+                                    
T Consensus      1604 k~e------~~~~iLk~LNs-N~E~Py~IWNn~TRaELLeFve~Qracq~~~G~~D~~yg~eF~Ys~h~KEliVG~ifir 1676 (2235)
T KOG1789|consen 1604 KLE------TNDMVLKTLNS-NMENPYMIWNNGTRAELLEFVERQRACQTSNGPTDELYGAEFEYSVHKKELIVGDIFIR 1676 (2235)
T ss_pred             HHH------HHHHHHHHhhc-CCCCceeeecCccHHHHHHHHHHHHhccCCCCCchhhccceeeehhhccceeeeeEEEE
Confidence            311      11112222221 22222222233322233333221                                    


Q ss_pred             -----CCHH---HHHHHHHHHHHHhcCChhhH----HHHHHcCCHHHHHHHhc--C----CChhHHHHHHHHHHHHhccC
Q 005282          247 -----EDAS---VHFEAVGVIGNLVHSSPSIK----KEVILAGALQPVIGLLS--S----SCSESKREAALLLGQFAAAD  308 (704)
Q Consensus       247 -----~~~~---v~~~a~~~L~~l~~~~~~~~----~~~~~~~~l~~L~~ll~--~----~~~~~~~~a~~~L~~l~~~~  308 (704)
                           ++..   -..-|...|-.+.+......    ..-.....+..-..+-.  +    +...-...++.+|.|+...+
T Consensus      1677 VYNeqPtf~l~ePk~Fa~~LlDyI~S~~~~l~~~~~~~~~s~d~ie~~~~V~sE~HgD~lPs~~~v~m~LtAL~Nli~~n 1756 (2235)
T KOG1789|consen 1677 VYNEQPTFALHEPKKFAIDLLDYIKSHSAELTGAPKPKAISDDLIEIDWGVGSEAHGDSLPTETKVLMTLTALANLVSAN 1756 (2235)
T ss_pred             eecCCCchhhcCcHHHHHHHHHHHHHhHHHhcCCCCccccccchhhhhcccchhhhcCCCChHHHHHHHHHHHHHHHhhC
Confidence                 0000   11223333333321110000    00000011111111111  1    11223567888999999877


Q ss_pred             CcchHHHHh----cCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHH
Q 005282          309 SNSKVHIVQ----RGAVRPLIEMLQS-PDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFA  383 (704)
Q Consensus       309 ~~~~~~~~~----~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~  383 (704)
                      ++....+..    -|..+.+..++.+ .+++++..|+..+..+..+.+.-..+...+.+..|+.+|++ -|+.|..++..
T Consensus      1757 PdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~lLHS-~PS~R~~vL~v 1835 (2235)
T KOG1789|consen 1757 PDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLTLLHS-QPSMRARVLDV 1835 (2235)
T ss_pred             cchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHHHHhc-ChHHHHHHHHH
Confidence            765443332    2778888888875 67899999999999999999988899999988889999976 67789999999


Q ss_pred             HHHcccCCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHHHHHHHHhccC
Q 005282          384 LYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCA  463 (704)
Q Consensus       384 L~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~  463 (704)
                      |+.|+++++-.+.-.++|++..+.+                                -+..+..+..+.+++..++.+..
T Consensus      1836 LYAL~S~~~i~keA~~hg~l~yil~--------------------------------~~c~~~~~QqRAqaAeLlaKl~A 1883 (2235)
T KOG1789|consen 1836 LYALSSNGQIGKEALEHGGLMYILS--------------------------------ILCLTNSDQQRAQAAELLAKLQA 1883 (2235)
T ss_pred             HHHHhcCcHHHHHHHhcCchhhhhH--------------------------------HHhccCcHHHHHHHHHHHHHhhh
Confidence            9999999999999999888766432                                23345678888899999999943

>PF05536 Neurochondrin: Neurochondrin

Probab=98.19  E-value=0.00073  Score=72.81  Aligned_cols=241  Identities=16%  Similarity=0.147  Sum_probs=164.3

Q ss_pred             hHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChh---hHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHH
Q 005282           94 VPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPE---HQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIR  169 (704)
Q Consensus        94 i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~---~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~  169 (704)
                      +...+.+|+..+.          +-|-.++-.+.++. .++.   .++.+.++=+.+.+-++|++...+... +....+.
T Consensus         7 l~~c~~lL~~~~D----------~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~-~~~~~~~   75 (543)
T PF05536_consen    7 LEKCLSLLKSADD----------TERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDC-PPEEYLS   75 (543)
T ss_pred             HHHHHHHhccCCc----------HHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCC-CHHHHHH
Confidence            5677888888865          77888888999999 4432   344688888889999999986533221 2347888


Q ss_pred             HHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCH-HHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCC
Q 005282          170 RAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDV-KVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSED  248 (704)
Q Consensus       170 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~-~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~  248 (704)
                      -|+..|+.+|. .|+....-.-.+-||.|+..+.+.+. .+...++.+|..++ ..++.++.+.+.|+++.|.+.+.+ .
T Consensus        76 LavsvL~~f~~-~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~-~  152 (543)
T PF05536_consen   76 LAVSVLAAFCR-DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN-Q  152 (543)
T ss_pred             HHHHHHHHHcC-ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh-C
Confidence            89999999997 55554433444668999999987766 99999999999999 599999999999999999999977 6


Q ss_pred             HHHHHHHHHHHHHHhcCChhhH---HHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcc-hHHHHhcC----C
Q 005282          249 ASVHFEAVGVIGNLVHSSPSIK---KEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNS-KVHIVQRG----A  320 (704)
Q Consensus       249 ~~v~~~a~~~L~~l~~~~~~~~---~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~----~  320 (704)
                      +.....++.++.+++.......   ..-.-..+++.+-..+.......+...+..|..+....+.. .......+    +
T Consensus       153 ~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l  232 (543)
T PF05536_consen  153 SFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDL  232 (543)
T ss_pred             cchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHH
Confidence            6778889999988875432110   00001123445555555555666777888888876544211 11122222    3


Q ss_pred             hHHHHHhhCC-CCHHHHHHHHHHHHHhhc
Q 005282          321 VRPLIEMLQS-PDSQLKEMSAFALGRLAQ  348 (704)
Q Consensus       321 i~~L~~ll~~-~~~~v~~~a~~~L~~l~~  348 (704)
                      ...+..++++ ..+.-|..+......+..
T Consensus       233 ~~gl~~iL~sr~~~~~R~~al~Laa~Ll~  261 (543)
T PF05536_consen  233 RKGLRDILQSRLTPSQRDPALNLAASLLD  261 (543)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            3445555555 345556666655555553

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=98.18  E-value=7.3e-05  Score=77.59  Aligned_cols=324  Identities=16%  Similarity=0.099  Sum_probs=196.3

Q ss_pred             HHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhc
Q 005282          166 GVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLR  245 (704)
Q Consensus       166 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~  245 (704)
                      .+++....+|..+......    .......+.+.+++...+..-+..+.+.++.+..  ......+.+.+++..+.+.+.
T Consensus       111 ~~q~~~~~~l~~~~~~~~~----~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~--g~~i~~~~~~~~l~~l~~ai~  184 (569)
T KOG1242|consen  111 SVQRAVSTCLPPLVVLSKG----LSGEYVLELLLELLTSTKIAERAGAAYGLAGLVN--GLGIESLKEFGFLDNLSKAII  184 (569)
T ss_pred             HHHHHHHHHhhhHHHHhhc----cCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHc--CcHHhhhhhhhHHHHHHHHhc
Confidence            7777777777776532211    1112345678888888888999999999999985  445566677788899999988


Q ss_pred             CCCHHHHHH-HHHHHHHHhcCChhhHHHHHHcCC---HHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCCh
Q 005282          246 SEDASVHFE-AVGVIGNLVHSSPSIKKEVILAGA---LQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAV  321 (704)
Q Consensus       246 ~~~~~v~~~-a~~~L~~l~~~~~~~~~~~~~~~~---l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i  321 (704)
                      +.....++. +..+....+..-.    ...+...   ++.++.-+.+..+.+|..|..+...+...-+.....    -++
T Consensus       185 dk~~~~~re~~~~a~~~~~~~Lg----~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK----~ll  256 (569)
T KOG1242|consen  185 DKKSALNREAALLAFEAAQGNLG----PPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVK----LLL  256 (569)
T ss_pred             ccchhhcHHHHHHHHHHHHHhcC----CCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhh----Hhh
Confidence            766555543 3222222221100    1112233   444455555677788887777766654332222111    134


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcccCCchhh--HHHh
Q 005282          322 RPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVA--DLVR  399 (704)
Q Consensus       322 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~--~l~~  399 (704)
                      +.++.-+.......+..++..++.++...+.+........++.+.+.|.++.+++|+.+..+|..++.-.++-.  .++-
T Consensus       257 psll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip  336 (569)
T KOG1242|consen  257 PSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIP  336 (569)
T ss_pred             hhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence            55554444446677889999999999988888888888999999999999999999999999999986333322  2221


Q ss_pred             hCCcccccccccccccchHHHHHHHHHHH-HHhhcc----hhHHHHHHHhhccHHHHHHHHHHHHhccCCCccceeeec-
Q 005282          400 VGGVQKLQDGEFTVQPTKDCVARTLKRLE-EKVHGR----VLNHLLYLLRVADRAVKRRVTLALAHLCAPDDCKTIFID-  473 (704)
Q Consensus       400 ~g~i~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~-  473 (704)
                      . +++.+.+..-   ...+|+-......- .-+...    +++.|.+-+...+..++..++.++.|+|.--+....+.. 
T Consensus       337 ~-Lld~l~dp~~---~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapf  412 (569)
T KOG1242|consen  337 T-LLDALADPSC---YTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPF  412 (569)
T ss_pred             H-HHHHhcCccc---chHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhh
Confidence            1 1111111110   11112111110000 000112    334444445556778899999999999763322211111 


Q ss_pred             -CCcHHHHHHHHhhcchhhhhhHHHHHHHHhhhcC
Q 005282          474 -NNGLELLLGLLESTSVKQREESSVALYKLATKAT  507 (704)
Q Consensus       474 -~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~  507 (704)
                       ...+|-|...+....|++|.-++.+|+.+.+...
T Consensus       413 l~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g  447 (569)
T KOG1242|consen  413 LPSLLPGLKENLDDAVPEVRAVAARALGALLERLG  447 (569)
T ss_pred             HHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHH
Confidence             1335555556666789999999999988877664

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=98.16  E-value=0.00035  Score=71.26  Aligned_cols=256  Identities=19%  Similarity=0.129  Sum_probs=176.0

Q ss_pred             HHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCC--ChhHH
Q 005282          217 LRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSS--CSESK  294 (704)
Q Consensus       217 L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~~~  294 (704)
                      |..+....+..+..+.-....+.+..++-+++.+++..+.+++..+..+ +...+.+.+.+.--.++.-|..+  +..-+
T Consensus         7 Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d-~~~l~~~~~l~id~~ii~SL~~~~~~~~ER   85 (371)
T PF14664_consen    7 LVDLLKRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISD-EESLQILLKLHIDIFIIRSLDRDNKNDVER   85 (371)
T ss_pred             HHHHHHhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcC-HHHHHHHHHcCCchhhHhhhcccCCChHHH
Confidence            3334334555555554444556666555556699999999999999866 55566677766544555545332  33348


Q ss_pred             HHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCCh
Q 005282          295 REAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNG  374 (704)
Q Consensus       295 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~  374 (704)
                      .+|...+..+..-... . ..+..|++..++.+..+.+...+..|..+|+.++-..+  ..+...||+..+++.+.++..
T Consensus        86 ~QALkliR~~l~~~~~-~-~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P--~lv~~~gG~~~L~~~l~d~~~  161 (371)
T PF14664_consen   86 EQALKLIRAFLEIKKG-P-KEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNP--ELVAECGGIRVLLRALIDGSF  161 (371)
T ss_pred             HHHHHHHHHHHHhcCC-c-ccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH--HHHHHcCCHHHHHHHHHhccH
Confidence            8999988888754221 1 12346789999999999999999999999999997544  456788999999999877777


Q ss_pred             hHHHHHHHHHHHcccCCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHH---HhhccH--H
Q 005282          375 SLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYL---LRVADR--A  449 (704)
Q Consensus       375 ~v~~~a~~~L~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l---l~~~~~--~  449 (704)
                      ++....+.++..+-.+|..++.+...--++.+.                             .++...   -..++.  +
T Consensus       162 ~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~-----------------------------apftd~~~~~~~~~~~~~  212 (371)
T PF14664_consen  162 SISESLLDTLLYLLDSPRTRKYLRPGFDLESLL-----------------------------APFTDFHYRKIKDDRELE  212 (371)
T ss_pred             hHHHHHHHHHHHHhCCcchhhhhcCCccHHHHH-----------------------------HhhhhhhccccccchHHH
Confidence            788899999999999998887765422222211                             111111   011222  3


Q ss_pred             HHHHHHHHHHhccCCCccceeeecC--CcHHHHHHHHhhcchhhhhhHHHHHHHHhhhc
Q 005282          450 VKRRVTLALAHLCAPDDCKTIFIDN--NGLELLLGLLESTSVKQREESSVALYKLATKA  506 (704)
Q Consensus       450 v~~~a~~~L~~l~~~~~~~~~l~~~--~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~  506 (704)
                      ....+..++..+-++..+-..+...  .|++.|+..+..+++++|......+..+-+-+
T Consensus       213 ~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Ildll~dllrik  271 (371)
T PF14664_consen  213 RLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAILDLLFDLLRIK  271 (371)
T ss_pred             HHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHCCC
Confidence            4556777777776655555555544  59999999999999999999999998887733

>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]

Probab=98.15  E-value=9.2e-06  Score=74.23  Aligned_cols=155  Identities=18%  Similarity=0.226  Sum_probs=96.9

Q ss_pred             CCcHHHHHHHHhh---cchhhhhhHHHHHHHHhhhcCCCCCCCCCCCCCchhhchHHhhhcCCCccc-EEEEE-cC----
Q 005282          474 NNGLELLLGLLES---TSVKQREESSVALYKLATKATSLSPMDAAPPSPTQQVYLGEQFVNNPTLSD-VTFVV-EG----  544 (704)
Q Consensus       474 ~~~i~~L~~ll~~---~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d-~~~~~-~~----  544 (704)
                      ...+..++..+..   +..+..-.-...|.+|+.+-.-...+         ..++ +.+++.-.+.| +.+.+ +|    
T Consensus       181 m~~feafLh~l~tgEfgmEd~~fqn~diL~QL~edFG~~kkL---------d~Dm-kglfd~~c~~d~li~~ssD~elve  250 (401)
T KOG2838|consen  181 MDAFEAFLHSLITGEFGMEDLGFQNSDILEQLCEDFGCFKKL---------DEDM-KGLFDQDCKHDDLIIESSDGELVE  250 (401)
T ss_pred             hHHHHHHHHHHHhcccchhhcCCchHHHHHHHHHhhCCchhh---------hHHH-HHHHHhhcccCcEEEEeccchhhh
Confidence            3455555554432   33445545567788888765322221         1222 34444444444 44333 22    


Q ss_pred             ----------eEeehhHHHHhhcCHHHHHhhcCCCCCCC---------CCceEcCC--CCHHHHHHHHHHHhcCccccC-
Q 005282          545 ----------KQFYAHRICLLASSDAFRAMFDGGYKEKN---------AKDVEIPN--IRWNVFELMMRFIYTGNVDVS-  602 (704)
Q Consensus       545 ----------~~~~~hk~iL~~~s~~f~~~f~~~~~e~~---------~~~i~l~~--~~~~~~~~~l~~~Y~~~~~~~-  602 (704)
                                .+++|||.|.++||+|||.++.....+++         ...|.+.+  ++..--..|++++||+.++++ 
T Consensus       251 afggeeNc~deeikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~PkRIifdE~I~PkafA~i~lhclYTD~lDlSl  330 (401)
T KOG2838|consen  251 AFGGEENCEDEEIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRPKRIIFDELIFPKAFAPIFLHCLYTDRLDLSL  330 (401)
T ss_pred             hcCCcccchhHHHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCCceeechhhhcchhhhhhhhhhheecccchhh
Confidence                      46999999999999999999975443322         12455554  444455678999999977532 


Q ss_pred             ---------------------------hhhHHHHHHHHhhhChHhHHHHHHHHHHhhCChhhH
Q 005282          603 ---------------------------VDIAQDLLRAADQYLLEGLKRLCEYSIAQIISVENI  638 (704)
Q Consensus       603 ---------------------------~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~~~  638 (704)
                                                 ...+++|+++|-+|.++-|.+.|+..+......++.
T Consensus       331 ~hkce~SigSLSeakAitnaGkpn~~qaaeAleL~~IAlFfEfemLaQa~e~Vir~acaadls  393 (401)
T KOG2838|consen  331 AHKCEDSIGSLSEAKAITNAGKPNDLQAAEALELIEIALFFEFEMLAQACEDVIRKACAADLS  393 (401)
T ss_pred             cccCCcccccHHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Confidence                                       124568888899999999999998888776655543

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=98.14  E-value=0.00039  Score=76.27  Aligned_cols=406  Identities=18%  Similarity=0.136  Sum_probs=257.1

Q ss_pred             hhHHHHHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc---CChhhHHHH
Q 005282           63 TDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA---VKPEHQQII  139 (704)
Q Consensus        63 ~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~---~~~~~~~~~  139 (704)
                      ..+.++..++.-+.+++..-+.  ....++.++.+.++..+...          .|+..|...+.++.   ..+.    =
T Consensus       249 ~~~~Vr~~~a~~l~~~a~~~~~--~~~~s~v~~~~~~L~~Ddqd----------sVr~~a~~~~~~l~~l~~~~~----d  312 (759)
T KOG0211|consen  249 DTPMVRRAVASNLGNIAKVLES--EIVKSEVLPTLIQLLRDDQD----------SVREAAVESLVSLLDLLDDDD----D  312 (759)
T ss_pred             cchhhHHHHHhhhHHHHHHHHH--HHHHhhccHHHhhhhhcchh----------hHHHHHHHHHHHHHHhcCCch----h
Confidence            4455677777888877764322  55678899999999998876          89999999988888   2221    1


Q ss_pred             HHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHH
Q 005282          140 VDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRT  219 (704)
Q Consensus       140 ~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~  219 (704)
                      ......+.+++...+..-        .++.........++..-.   ........+++...+++....+.+..+..-...
T Consensus       313 ~~~~~~~~l~~~~~d~~~--------~v~~~~~~~~~~L~~~~~---~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~  381 (759)
T KOG0211|consen  313 VVKSLTESLVQAVEDGSW--------RVSYMVADKFSELSSAVG---PSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQK  381 (759)
T ss_pred             hhhhhhHHHHHHhcChhH--------HHHHHHhhhhhhHHHHhc---cccCcccchhhHHHHhcchhhhhhHHhhcchHH
Confidence            112344666666665442        565555555555553211   123334557788888888888888777777776


Q ss_pred             hccC-CchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHH
Q 005282          220 LAFK-NDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAA  298 (704)
Q Consensus       220 l~~~-~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~  298 (704)
                      ++.. +......+....++|.+-.+..+.+..++...+..+..+....+   ..-.-....+.++..+++..+.++.+..
T Consensus       382 l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~---k~~ti~~llp~~~~~l~de~~~V~lnli  458 (759)
T KOG0211|consen  382 LACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILP---KERTISELLPLLIGNLKDEDPIVRLNLI  458 (759)
T ss_pred             HhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCC---cCcCccccChhhhhhcchhhHHHHHhhH
Confidence            6542 33444555566668888888888899999988888877764332   1111134567778888888999999988


Q ss_pred             HHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHH
Q 005282          299 LLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQH  378 (704)
Q Consensus       299 ~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~  378 (704)
                      +.+..+-...+........+..++.+..+.......++.+..+.+..++....  ..+.....-+.+...+.+...++++
T Consensus       459 ~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~--~~~~~~~~~~l~~~~l~d~v~~Ir~  536 (759)
T KOG0211|consen  459 DKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG--VEFFDEKLAELLRTWLPDHVYSIRE  536 (759)
T ss_pred             HHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh--hHHhhHHHHHHHHhhhhhhHHHHHH
Confidence            87766544344434445556677888887777778888888888888875433  2233333333445556667778999


Q ss_pred             HHHHHHHHccc--C-CchhhHHHhhCCcccccccccccccchHHHHHHHHHHHH-----HhhcchhHHHHHHHhhccHHH
Q 005282          379 NAAFALYGLAD--N-EDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEE-----KVHGRVLNHLLYLLRVADRAV  450 (704)
Q Consensus       379 ~a~~~L~~l~~--~-~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~L~~ll~~~~~~v  450 (704)
                      .|+..+..++.  . .-.+..++.. .+....+..+..   .......+..+.+     .....+++.+..+..+..+.|
T Consensus       537 ~aa~~l~~l~~~~G~~w~~~~~i~k-~L~~~~q~~y~~---R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanV  612 (759)
T KOG0211|consen  537 AAARNLPALVETFGSEWARLEEIPK-LLAMDLQDNYLV---RMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANV  612 (759)
T ss_pred             HHHHHhHHHHHHhCcchhHHHhhHH-HHHHhcCcccch---hhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhh
Confidence            99998888873  1 1112211110 000000111111   1122223333332     336678899999999999999


Q ss_pred             HHHHHHHHHhccCCCccceeeecCCcHHHHHHHHhhcchhhhhhHHHHHHHHhhhc
Q 005282          451 KRRVTLALAHLCAPDDCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLATKA  506 (704)
Q Consensus       451 ~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~  506 (704)
                      +.+++..|..+...-..  ...+....+.+..+..+.+.+++.+|..+...+....
T Consensus       613 R~nvak~L~~i~~~L~~--~~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~l~~  666 (759)
T KOG0211|consen  613 RINVAKHLPKILKLLDE--SVRDEEVLPLLETLSSDQELDVRYRAILAFGSIELSR  666 (759)
T ss_pred             hhhHHHHHHHHHhhcch--HHHHHHHHHHHHHhccCcccchhHHHHHHHHHHHHHH
Confidence            99999999888432211  1223445667777777889999999988777665433

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.10  E-value=0.0015  Score=64.92  Aligned_cols=267  Identities=17%  Similarity=0.176  Sum_probs=196.7

Q ss_pred             HHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCCh----------hhHHH
Q 005282           69 KTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKP----------EHQQI  138 (704)
Q Consensus        69 ~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~----------~~~~~  138 (704)
                      ...+..+.-++.-|+.-..+++.++++.|+++|...+.          ++.......|..+.+..          ...+.
T Consensus       102 hd~IQ~mhvlAt~PdLYp~lveln~V~slL~LLgHeNt----------DI~iavvdLLqELTD~Dv~~es~egAevLida  171 (536)
T KOG2734|consen  102 HDIIQEMHVLATMPDLYPILVELNAVQSLLELLGHENT----------DIAIAVVDLLQELTDEDVLYESEEGAEVLIDA  171 (536)
T ss_pred             HHHHHHHHhhhcChHHHHHHHHhccHHHHHHHhcCCCc----------hhHHHHHHHHHHhhhhcccccccccHHHHHHH
Confidence            34556666677778888888999999999999999988          89999999999988321          23456


Q ss_pred             HHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcC--CCHHHHHHHHHH
Q 005282          139 IVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKF--VDVKVQRAAAGA  216 (704)
Q Consensus       139 ~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~~~~~a~~~  216 (704)
                      +++.++++.|++-+..-+.+...+  -.-...++..+-|+..-.+.....+++.|.+.-|+.-+..  +-......|..+
T Consensus       172 Lvdg~vlaLLvqnveRLdEsvkee--a~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEi  249 (536)
T KOG2734|consen  172 LVDGQVLALLVQNVERLDESVKEE--ADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEI  249 (536)
T ss_pred             HHhccHHHHHHHHHHHhhhcchhh--hhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHH
Confidence            778899999999987765432221  1456677888889888788888888888887777764442  344567788888


Q ss_pred             HHHhccCCchhhHHhHhcCChHHHHHhhc-----C---C-CHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhc
Q 005282          217 LRTLAFKNDENKKLIVECNALPTLVLMLR-----S---E-DASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLS  287 (704)
Q Consensus       217 L~~l~~~~~~~~~~~~~~~~i~~L~~lL~-----~---~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~  287 (704)
                      +.-+..++.+++......+++..+++-+.     +   . ..+..+....+|+.+... +..+..+....++....-+++
T Consensus       250 Laillq~s~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~-~~nr~~Fl~~EGlqLm~Lmlr  328 (536)
T KOG2734|consen  250 LAILLQNSDENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMA-PANRERFLKGEGLQLMNLMLR  328 (536)
T ss_pred             HHHHhccCchhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcC-hhhhhhhhccccHHHHHHHHH
Confidence            88888878889998989999999988765     2   1 235667777888887755 777888888888887776666


Q ss_pred             CCChhHHHHHHHHHHHHhccCC--cchHHHHhcCChHHHHHhhC-CC---------CHHHHHHHHHHHHHhhcC
Q 005282          288 SSCSESKREAALLLGQFAAADS--NSKVHIVQRGAVRPLIEMLQ-SP---------DSQLKEMSAFALGRLAQD  349 (704)
Q Consensus       288 ~~~~~~~~~a~~~L~~l~~~~~--~~~~~~~~~~~i~~L~~ll~-~~---------~~~v~~~a~~~L~~l~~~  349 (704)
                      . ....+..+..+|.....+.+  +++..+++..++..+..+.- .+         ..+.-++.+..|+.+-.+
T Consensus       329 ~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~  401 (536)
T KOG2734|consen  329 E-KKVSRGSALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRN  401 (536)
T ss_pred             H-HHHhhhhHHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHh
Confidence            5 34557788889988877655  66777777777766666543 21         235566777777776654

>PF05536 Neurochondrin: Neurochondrin

Probab=98.10  E-value=0.0039  Score=67.28  Aligned_cols=201  Identities=14%  Similarity=0.136  Sum_probs=135.0

Q ss_pred             HHHHhhhccCCchhhHHHHHHHHHHHHHhhcC-h---hHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHH
Q 005282           50 QIDILNSKFSSDETDRAAAKTASHALVEFAKN-E---EIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFA  125 (704)
Q Consensus        50 l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~-~---~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~  125 (704)
                      .++.+..+++...++  .+..++-.+.++..+ +   ..++.+.++=+.+.+-++|.....+...+   ....+.-|+.+
T Consensus         6 ~l~~c~~lL~~~~D~--~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~---~~~~~~Lavsv   80 (543)
T PF05536_consen    6 SLEKCLSLLKSADDT--ERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCP---PEEYLSLAVSV   80 (543)
T ss_pred             HHHHHHHHhccCCcH--HHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCC---HHHHHHHHHHH
Confidence            344455555433322  467777777777763 2   33445778877899999999865422221   24788889999


Q ss_pred             HHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCC
Q 005282          126 LGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFV  205 (704)
Q Consensus       126 L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~  205 (704)
                      |+.++..|+....---.+-||.|+..+.+...       .++...|..+|..++ ..++.+..+.+.|+++.|.+.+.+ 
T Consensus        81 L~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~-------~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~-  151 (543)
T PF05536_consen   81 LAAFCRDPELASSPQMVSRIPLLLEILSSSSD-------LETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN-  151 (543)
T ss_pred             HHHHcCChhhhcCHHHHHHHHHHHHHHHcCCc-------hhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh-
Confidence            99999888765432333679999999988765       278899999999999 578889999999999999999987 


Q ss_pred             CHHHHHHHHHHHHHhccCCchhhHHhHh-----cCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCC
Q 005282          206 DVKVQRAAAGALRTLAFKNDENKKLIVE-----CNALPTLVLMLRSEDASVHFEAVGVIGNLVHSS  266 (704)
Q Consensus       206 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~-----~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~  266 (704)
                      .+...+.|+.++.+++....  .+...+     ..+++.+-..+.......+...+..|..+....
T Consensus       152 ~~~~~E~Al~lL~~Lls~~~--~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~  215 (543)
T PF05536_consen  152 QSFQMEIALNLLLNLLSRLG--QKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRS  215 (543)
T ss_pred             CcchHHHHHHHHHHHHHhcc--hhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcC
Confidence            56678888888888875322  111100     012333444444444455556666666665443

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.10  E-value=0.0023  Score=68.18  Aligned_cols=363  Identities=18%  Similarity=0.158  Sum_probs=227.6

Q ss_pred             HHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHH
Q 005282           95 PALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADA  174 (704)
Q Consensus        95 ~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~  174 (704)
                      .-|.++|.+...         ....+..=++++.++.+.+.      ...+|.+++...+.+.        +++.-.--.
T Consensus        38 ~dL~~lLdSnkd---------~~KleAmKRIia~iA~G~dv------S~~Fp~VVKNVaskn~--------EVKkLVyvY   94 (968)
T KOG1060|consen   38 DDLKQLLDSNKD---------SLKLEAMKRIIALIAKGKDV------SLLFPAVVKNVASKNI--------EVKKLVYVY   94 (968)
T ss_pred             HHHHHHHhcccc---------HHHHHHHHHHHHHHhcCCcH------HHHHHHHHHHhhccCH--------HHHHHHHHH
Confidence            457888888765         34444444566666655543      2345777777777665        888888888


Q ss_pred             HHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHH
Q 005282          175 ITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFE  254 (704)
Q Consensus       175 L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~  254 (704)
                      |...+...++..     .=-|..+-+-|+++|+.+|..|+++|..+=.  +.....     .+-.+-+...+..+.||..
T Consensus        95 LlrYAEeqpdLA-----LLSIntfQk~L~DpN~LiRasALRvlSsIRv--p~IaPI-----~llAIk~~~~D~s~yVRk~  162 (968)
T KOG1060|consen   95 LLRYAEEQPDLA-----LLSINTFQKALKDPNQLIRASALRVLSSIRV--PMIAPI-----MLLAIKKAVTDPSPYVRKT  162 (968)
T ss_pred             HHHHhhcCCCce-----eeeHHHHHhhhcCCcHHHHHHHHHHHHhcch--hhHHHH-----HHHHHHHHhcCCcHHHHHH
Confidence            888887665431     1236778888999999999999998887753  111111     1223445556889999999


Q ss_pred             HHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHH
Q 005282          255 AVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQ  334 (704)
Q Consensus       255 a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~  334 (704)
                      |+.+|-.+-.-+++...     ..+..+-.+|.+.++-+...|+.+...+|.   +....+  ++-...|+.++..-+..
T Consensus       163 AA~AIpKLYsLd~e~k~-----qL~e~I~~LLaD~splVvgsAv~AF~evCP---erldLI--HknyrklC~ll~dvdeW  232 (968)
T KOG1060|consen  163 AAHAIPKLYSLDPEQKD-----QLEEVIKKLLADRSPLVVGSAVMAFEEVCP---ERLDLI--HKNYRKLCRLLPDVDEW  232 (968)
T ss_pred             HHHhhHHHhcCChhhHH-----HHHHHHHHHhcCCCCcchhHHHHHHHHhch---hHHHHh--hHHHHHHHhhccchhhh
Confidence            99999999877666554     345677788899999999999999988864   333333  45577788888776666


Q ss_pred             HHHHHHHHHHHhhcCC---chh----------------------hhHHhhCChHHHH----HhhcCCChhHHHHHHHHHH
Q 005282          335 LKEMSAFALGRLAQDT---HNQ----------------------AGIAQDGGILPLL----KLLDSKNGSLQHNAAFALY  385 (704)
Q Consensus       335 v~~~a~~~L~~l~~~~---~~~----------------------~~~~~~~~~~~L~----~ll~~~~~~v~~~a~~~L~  385 (704)
                      -|..+..+|..-+...   +..                      .....+.-+..|+    .++.+.++.|...++.+.+
T Consensus       233 gQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y  312 (968)
T KOG1060|consen  233 GQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFY  312 (968)
T ss_pred             hHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHH
Confidence            6666777777666431   100                      1111122233344    3557789999999999999


Q ss_pred             HcccCCchhhHHHh--------hCCccccc-----------cccc-------cc---ccchHHH--HHHHHHHHH-Hhhc
Q 005282          386 GLADNEDNVADLVR--------VGGVQKLQ-----------DGEF-------TV---QPTKDCV--ARTLKRLEE-KVHG  433 (704)
Q Consensus       386 ~l~~~~~~~~~l~~--------~g~i~~l~-----------~~~~-------~~---~~~~~~~--~~~~~~~~~-~~~~  433 (704)
                      .++-..+.. .|++        ...++..+           ...|       -+   .+..-++  ...+..+.. ...+
T Consensus       313 ~lAP~~~~~-~i~kaLvrLLrs~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~  391 (968)
T KOG1060|consen  313 HLAPKNQVT-KIAKALVRLLRSNREVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNIS  391 (968)
T ss_pred             hhCCHHHHH-HHHHHHHHHHhcCCcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHH
Confidence            998533221 1111        11211111           0000       00   0000011  111222221 2244


Q ss_pred             chhHHHHHHHhhccHHHHHHHHHHHHhccCCCccceeeecCCcHHHHHHHHhhcchhhhhhHHHHHHHHhhhcC
Q 005282          434 RVLNHLLYLLRVADRAVKRRVTLALAHLCAPDDCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLATKAT  507 (704)
Q Consensus       434 ~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~  507 (704)
                      .+++.+..++.+.+..+...+..+|+.++.....    .....+.-|+.++.+.+..|-..|..++..|....+
T Consensus       392 ~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~s----v~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p  461 (968)
T KOG1060|consen  392 EILRELQTYIKSSDRSFAAAAVKAIGRCASRIGS----VTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDP  461 (968)
T ss_pred             HHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCc----hhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhCh
Confidence            5777788888888877777888888888543211    234567789999998888888889999998888664

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.03  E-value=0.00052  Score=68.04  Aligned_cols=231  Identities=17%  Similarity=0.193  Sum_probs=174.0

Q ss_pred             HHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCC-----c----hhhHHhHhcCChHHHHHh
Q 005282          173 DAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKN-----D----ENKKLIVECNALPTLVLM  243 (704)
Q Consensus       173 ~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-----~----~~~~~~~~~~~i~~L~~l  243 (704)
                      .-+.-++ .-|.....+++.++++.|+.+|.+.+.++....+..+..|+..+     .    .....+++.++++.|++-
T Consensus       106 Q~mhvlA-t~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqn  184 (536)
T KOG2734|consen  106 QEMHVLA-TMPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQN  184 (536)
T ss_pred             HHHHhhh-cChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHH
Confidence            3344455 36777778999999999999999999999999999999997521     1    234556778899999988


Q ss_pred             hcCCCH------HHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCC--ChhHHHHHHHHHHHHhccCCcchHHH
Q 005282          244 LRSEDA------SVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSS--CSESKREAALLLGQFAAADSNSKVHI  315 (704)
Q Consensus       244 L~~~~~------~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~  315 (704)
                      +..-+.      .-...++..+-|+..-.+.....+++.|.+..|+.-+...  -..-...|..+|+-+...+.+++..+
T Consensus       185 veRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~  264 (536)
T KOG2734|consen  185 VERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLL  264 (536)
T ss_pred             HHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhh
Confidence            873333      3345778889999988888889889889999988755432  22335667777777776666788888


Q ss_pred             HhcCChHHHHHhhC----CC-----CHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHH
Q 005282          316 VQRGAVRPLIEMLQ----SP-----DSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYG  386 (704)
Q Consensus       316 ~~~~~i~~L~~ll~----~~-----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~  386 (704)
                      ..-.++..++.-+.    .+     ..+..++...+|+.+...+.++..+....|++...-+++. ....+..+..+|-.
T Consensus       265 ~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~  343 (536)
T KOG2734|consen  265 GPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDH  343 (536)
T ss_pred             cCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHH
Confidence            88888888888763    11     3467788888999999999999999999888765555554 55567788889988


Q ss_pred             cccCC---chhhHHHhhCCccc
Q 005282          387 LADNE---DNVADLVRVGGVQK  405 (704)
Q Consensus       387 l~~~~---~~~~~l~~~g~i~~  405 (704)
                      ...++   +++..+++.+|+..
T Consensus       344 am~g~~gt~~C~kfVe~lGLrt  365 (536)
T KOG2734|consen  344 AMFGPEGTPNCNKFVEILGLRT  365 (536)
T ss_pred             HHhCCCchHHHHHHHHHHhHHH
Confidence            87654   46788888777655

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.98  E-value=0.0038  Score=66.59  Aligned_cols=339  Identities=19%  Similarity=0.199  Sum_probs=193.7

Q ss_pred             hhHHHHHHHHHHHHHhhc-ChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHHHH
Q 005282           63 TDRAAAKTASHALVEFAK-NEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQIIV  140 (704)
Q Consensus        63 ~~~~~~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~~  140 (704)
                      ..+.++..|+.++..+.. +++....+     +..+-.+|.+.++          -|.-.|+.+.-.+| ..-   +.+ 
T Consensus       155 ~s~yVRk~AA~AIpKLYsLd~e~k~qL-----~e~I~~LLaD~sp----------lVvgsAv~AF~evCPerl---dLI-  215 (968)
T KOG1060|consen  155 PSPYVRKTAAHAIPKLYSLDPEQKDQL-----EEVIKKLLADRSP----------LVVGSAVMAFEEVCPERL---DLI-  215 (968)
T ss_pred             CcHHHHHHHHHhhHHHhcCChhhHHHH-----HHHHHHHhcCCCC----------cchhHHHHHHHHhchhHH---HHh-
Confidence            345577777777777766 56655544     4555566666654          67777777777777 221   111 


Q ss_pred             HcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhc---Chhh---------------------hhhhhccCCcH
Q 005282          141 DTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHE---NANI---------------------KTRVRVEDGIP  196 (704)
Q Consensus       141 ~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~---~~~~---------------------~~~~~~~~~i~  196 (704)
                       ++-...++++|.+-+.       |. +......|...|..   .|..                     +.-+....-+.
T Consensus       216 -HknyrklC~ll~dvde-------Wg-QvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~  286 (968)
T KOG1060|consen  216 -HKNYRKLCRLLPDVDE-------WG-QVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLK  286 (968)
T ss_pred             -hHHHHHHHhhccchhh-------hh-HHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHH
Confidence             2345566666665442       11 11222223332311   1100                     00000011122


Q ss_pred             HH----HHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHH
Q 005282          197 PL----VELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKE  272 (704)
Q Consensus       197 ~L----~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~  272 (704)
                      .|    -.++.+.++.+..+++.+.+.++-  . ++.    ..++..|+++|++ +..++...+..+..++...+..   
T Consensus       287 lLL~stkpLl~S~n~sVVmA~aql~y~lAP--~-~~~----~~i~kaLvrLLrs-~~~vqyvvL~nIa~~s~~~~~l---  355 (968)
T KOG1060|consen  287 LLLQSTKPLLQSRNPSVVMAVAQLFYHLAP--K-NQV----TKIAKALVRLLRS-NREVQYVVLQNIATISIKRPTL---  355 (968)
T ss_pred             HHHHhccHHHhcCCcHHHHHHHhHHHhhCC--H-HHH----HHHHHHHHHHHhc-CCcchhhhHHHHHHHHhcchhh---
Confidence            23    345668889999999999999983  2 111    2246778888864 5677788888888777554332   


Q ss_pred             HHHcCCHHHHHHHh-cCCC-hhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC
Q 005282          273 VILAGALQPVIGLL-SSSC-SESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDT  350 (704)
Q Consensus       273 ~~~~~~l~~L~~ll-~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  350 (704)
                           +-|.+-.+. .+.+ ..+...-+..|.+++.  +.+...     +++.+....++.+..+...+..+|+.++...
T Consensus       356 -----F~P~lKsFfv~ssDp~~vk~lKleiLs~La~--esni~~-----ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~  423 (968)
T KOG1060|consen  356 -----FEPHLKSFFVRSSDPTQVKILKLEILSNLAN--ESNISE-----ILRELQTYIKSSDRSFAAAAVKAIGRCASRI  423 (968)
T ss_pred             -----hhhhhhceEeecCCHHHHHHHHHHHHHHHhh--hccHHH-----HHHHHHHHHhcCchhHHHHHHHHHHHHHHhh
Confidence                 234444333 2333 3345555667888873  344333     3667777888888888889999999988653


Q ss_pred             chhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHccc-CCchh-hHHHh-hCCcccccccccccccchHHHHHHHHHH
Q 005282          351 HNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLAD-NEDNV-ADLVR-VGGVQKLQDGEFTVQPTKDCVARTLKRL  427 (704)
Q Consensus       351 ~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~-~~l~~-~g~i~~l~~~~~~~~~~~~~~~~~~~~~  427 (704)
                      ..    +....+..|+.++.+.+..|...++..+..|.. +|... +.+.+ +..++.+     .+.....++.+.+...
T Consensus       424 ~s----v~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h~~ii~~La~lldti-----~vp~ARA~IiWLige~  494 (968)
T KOG1060|consen  424 GS----VTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEHLEILFQLARLLDTI-----LVPAARAGIIWLIGEY  494 (968)
T ss_pred             Cc----hhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHHHHHHHHHHHHhhhh-----hhhhhhceeeeeehhh
Confidence            21    334456778999999999999999999988886 33322 22222 1111111     1111222333333333


Q ss_pred             HH---HhhcchhHHHHHHHhhccHHHHHHHHHHHHhc
Q 005282          428 EE---KVHGRVLNHLLYLLRVADRAVKRRVTLALAHL  461 (704)
Q Consensus       428 ~~---~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l  461 (704)
                      .+   .+..+++..+..-..++.+.++.+++.....|
T Consensus       495 ~e~vpri~PDVLR~laksFs~E~~evKlQILnL~aKL  531 (968)
T KOG1060|consen  495 CEIVPRIAPDVLRKLAKSFSDEGDEVKLQILNLSAKL  531 (968)
T ss_pred             hhhcchhchHHHHHHHHhhccccchhhHHHHHhhhhh
Confidence            33   33455666666666777778887777666666

>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]

Probab=97.96  E-value=4.9e-05  Score=70.02  Aligned_cols=95  Identities=28%  Similarity=0.490  Sum_probs=79.3

Q ss_pred             EEEEEcCeEeehhHHHHhhcCHHHHHhhcCCCC-CCCCCceEcCCCCHHHHHHHHHHHhcCccccCh--hhHHHHHHHHh
Q 005282          538 VTFVVEGKQFYAHRICLLASSDAFRAMFDGGYK-EKNAKDVEIPNIRWNVFELMMRFIYTGNVDVSV--DIAQDLLRAAD  614 (704)
Q Consensus       538 ~~~~~~~~~~~~hk~iL~~~s~~f~~~f~~~~~-e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~--~~~~~ll~~A~  614 (704)
                      +.+-+||+.|..++.-|.....||++|+.+++. +.+...-.+-|=+|..|..+|.|+=+|++.++.  ..+.+|+.=|.
T Consensus         7 vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFIDRSpKHF~~ILNfmRdGdv~LPe~~kel~El~~EA~   86 (230)
T KOG2716|consen    7 VKLNVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFIDRSPKHFDTILNFMRDGDVDLPESEKELKELLREAE   86 (230)
T ss_pred             EEEecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEecCChhHHHHHHHhhhcccccCccchHHHHHHHHHHH
Confidence            567789999999999999999999999998874 333333333466899999999999999888755  46779999999


Q ss_pred             hhChHhHHHHHHHHHHhh
Q 005282          615 QYLLEGLKRLCEYSIAQI  632 (704)
Q Consensus       615 ~~~~~~l~~~c~~~l~~~  632 (704)
                      +|.+++|.+.|...+...
T Consensus        87 fYlL~~Lv~~C~~~i~~~  104 (230)
T KOG2716|consen   87 FYLLDGLVELCQSAIARL  104 (230)
T ss_pred             HhhHHHHHHHHHHHhhhc
Confidence            999999999999987553

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=97.95  E-value=0.0041  Score=63.87  Aligned_cols=214  Identities=32%  Similarity=0.370  Sum_probs=144.2

Q ss_pred             CChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHH
Q 005282           92 GAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRA  171 (704)
Q Consensus        92 g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a  171 (704)
                      ..++.+++++.+.+.          .++..|.+.++.+..          ..+++.+..++.+...        .++..+
T Consensus        43 ~~~~~~~~~l~~~~~----------~vr~~aa~~l~~~~~----------~~av~~l~~~l~d~~~--------~vr~~a   94 (335)
T COG1413          43 EAADELLKLLEDEDL----------LVRLSAAVALGELGS----------EEAVPLLRELLSDEDP--------RVRDAA   94 (335)
T ss_pred             hhHHHHHHHHcCCCH----------HHHHHHHHHHhhhch----------HHHHHHHHHHhcCCCH--------HHHHHH
Confidence            357889999999855          899999999777762          3467899999998776        899999


Q ss_pred             HHHHHHhhhcChhhhhhhhccCCcHHHHHHhc-CCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCH-
Q 005282          172 ADAITNLAHENANIKTRVRVEDGIPPLVELLK-FVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDA-  249 (704)
Q Consensus       172 ~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~-  249 (704)
                      +.+|+.+-.  +         ..++.++.++. +.+..++..+.++|..+-.           ...+..++..+.+... 
T Consensus        95 ~~aLg~~~~--~---------~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~-----------~~a~~~l~~~l~~~~~~  152 (335)
T COG1413          95 ADALGELGD--P---------EAVPPLVELLENDENEGVRAAAARALGKLGD-----------ERALDPLLEALQDEDSG  152 (335)
T ss_pred             HHHHHccCC--h---------hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCc-----------hhhhHHHHHHhccchhh
Confidence            998887752  2         34788999998 6999999999999999974           1236667777776553 


Q ss_pred             -----------HHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhc
Q 005282          250 -----------SVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQR  318 (704)
Q Consensus       250 -----------~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~  318 (704)
                                 .++..+...++.+-           ....++.+...+.+....++..++.+|+.+....         .
T Consensus       153 ~a~~~~~~~~~~~r~~a~~~l~~~~-----------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~  212 (335)
T COG1413         153 SAAAALDAALLDVRAAAAEALGELG-----------DPEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------V  212 (335)
T ss_pred             hhhhhccchHHHHHHHHHHHHHHcC-----------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------h
Confidence                       23444444444332           1234566666777766677777777777765422         2


Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHH
Q 005282          319 GAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALY  385 (704)
Q Consensus       319 ~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~  385 (704)
                      .+.+.+...+.+++..++..++.+|+.+-...          .+..++..+.+.+..++..+...+.
T Consensus       213 ~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~~~----------~~~~l~~~l~~~~~~~~~~~~~~~~  269 (335)
T COG1413         213 EAADLLVKALSDESLEVRKAALLALGEIGDEE----------AVDALAKALEDEDVILALLAAAALG  269 (335)
T ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHhcccCcch----------hHHHHHHHHhccchHHHHHHHHHhc
Confidence            34566666667777777777777666544332          3345566666666655555544444

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.94  E-value=0.0008  Score=76.60  Aligned_cols=327  Identities=15%  Similarity=0.091  Sum_probs=187.1

Q ss_pred             hHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhh
Q 005282          165 SGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLML  244 (704)
Q Consensus       165 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL  244 (704)
                      |.-+..|+..++.++... .-+..-.-...||.|.++=.++++.++.+...+=..|..+......... ..+++-|+.-+
T Consensus       971 wnSk~GaAfGf~~i~~~a-~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~-neIl~eLL~~l 1048 (1702)
T KOG0915|consen  971 WNSKKGAAFGFGAIAKQA-GEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYL-NEILDELLVNL 1048 (1702)
T ss_pred             hhcccchhhchHHHHHHH-HHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHH-HHHHHHHHHhc
Confidence            566777888888887533 2222233345678888887789999987655554445543222222222 34677788888


Q ss_pred             cCCCHHHHHHHHHHHHHHhcCChhhHHHHHH--cCCHHHHHHHhcCCChhHHH---HHHHHHHHHhccC--C--cchHHH
Q 005282          245 RSEDASVHFEAVGVIGNLVHSSPSIKKEVIL--AGALQPVIGLLSSSCSESKR---EAALLLGQFAAAD--S--NSKVHI  315 (704)
Q Consensus       245 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~l~~L~~ll~~~~~~~~~---~a~~~L~~l~~~~--~--~~~~~~  315 (704)
                      .+....||+.+|.+|..|.++.+.-.  +.+  ......+...+.+-...+|.   .++.+|+.++...  .  .....-
T Consensus      1049 t~kewRVReasclAL~dLl~g~~~~~--~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~ 1126 (1702)
T KOG0915|consen 1049 TSKEWRVREASCLALADLLQGRPFDQ--VKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKE 1126 (1702)
T ss_pred             cchhHHHHHHHHHHHHHHHcCCChHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHH
Confidence            88999999999999999998754321  111  12333344444443344544   3455666655221  1  111111


Q ss_pred             HhcCChHHHHHh-hCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcccCCchh
Q 005282          316 VQRGAVRPLIEM-LQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNV  394 (704)
Q Consensus       316 ~~~~~i~~L~~l-l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~  394 (704)
                      .-..++|.|+.- .-+.-.++|..+..++..|+......-+-.-...++.|++....-.+.+......=+.+..  .+..
T Consensus      1127 ~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e--~eal 1204 (1702)
T KOG0915|consen 1127 ALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIE--TEAL 1204 (1702)
T ss_pred             HHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhH--HHHH
Confidence            112234444331 1145578999999999999987665433333345566666666655555433322222221  1111


Q ss_pred             hHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhcc-HHHHHHHHHHHHhccCCCccceeeec
Q 005282          395 ADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVAD-RAVKRRVTLALAHLCAPDDCKTIFID  473 (704)
Q Consensus       395 ~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~~l~~  473 (704)
                      ......+         ....+..+.+-..+...+..+.+.++|.+..+++.+- -..+..++..+..|...-........
T Consensus      1205 Dt~R~s~---------aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~s 1275 (1702)
T KOG0915|consen 1205 DTLRASA---------AKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYS 1275 (1702)
T ss_pred             HHHHHhh---------hcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcch
Confidence            1111111         1122344556666777777777888999999997753 34556667777666322111111122


Q ss_pred             CCcHHHHHHHHhhcchhhhhhHHHHHHHHhhhc
Q 005282          474 NNGLELLLGLLESTSVKQREESSVALYKLATKA  506 (704)
Q Consensus       474 ~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~  506 (704)
                      ..-+..++..+.+.++.+++.-+.|...|..-+
T Consensus      1276 gKll~al~~g~~dRNesv~kafAsAmG~L~k~S 1308 (1702)
T KOG0915|consen 1276 GKLLRALFPGAKDRNESVRKAFASAMGYLAKFS 1308 (1702)
T ss_pred             hHHHHHHhhccccccHHHHHHHHHHHHHHHhcC
Confidence            234667777778889999999999999888755

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=97.94  E-value=0.00029  Score=72.43  Aligned_cols=300  Identities=17%  Similarity=0.122  Sum_probs=176.8

Q ss_pred             CcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhh--hhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 005282          144 ALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANI--KTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLA  221 (704)
Q Consensus       144 ~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~--~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~  221 (704)
                      .+..++.+|++...        .++..|+...+.++.--..+  -..+...|  ..|.+.+...++++.-..+.+++.+.
T Consensus       605 ivStiL~~L~~k~p--------~vR~~aadl~~sl~~vlk~c~e~~~l~klg--~iLyE~lge~ypEvLgsil~Ai~~I~  674 (975)
T COG5181         605 IVSTILKLLRSKPP--------DVRIRAADLMGSLAKVLKACGETKELAKLG--NILYENLGEDYPEVLGSILKAICSIY  674 (975)
T ss_pred             HHHHHHHHhcCCCc--------cHHHHHHHHHHHHHHHHHhcchHHHHHHHh--HHHHHhcCcccHHHHHHHHHHHHHHh
Confidence            34556666766655        88999998888886311111  11122222  23667777889999998888888886


Q ss_pred             cCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHH
Q 005282          222 FKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLL  301 (704)
Q Consensus       222 ~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L  301 (704)
                      .-..-..-+.--.|++|.|..+|++....+.......++.++...++....--.....--|+..|.+.+.+++++|...+
T Consensus       675 sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tf  754 (975)
T COG5181         675 SVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETF  754 (975)
T ss_pred             hhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhh
Confidence            42221112222457899999999999999999999999999987776332111112233466777888899999999999


Q ss_pred             HHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHH
Q 005282          302 GQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAA  381 (704)
Q Consensus       302 ~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~  381 (704)
                      +.++..       +.-+.++..|+.-|+.++...+....-+++-.+.....      -..++.|+.=-...+..||.-.+
T Consensus       755 G~Is~a-------iGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgp------fsVlP~lm~dY~TPe~nVQnGvL  821 (975)
T COG5181         755 GCISRA-------IGPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGP------FSVLPTLMSDYETPEANVQNGVL  821 (975)
T ss_pred             hhHHhh-------cCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCc------hhhHHHHHhcccCchhHHHHhHH
Confidence            988642       22234556666666665555554444444333322100      01233333333445677888888


Q ss_pred             HHHHHccc--CCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHHHHHHHH
Q 005282          382 FALYGLAD--NEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALA  459 (704)
Q Consensus       382 ~~L~~l~~--~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~  459 (704)
                      .+++.+-.  ....+.++                                   ..+.|.|-..+.+.|+..+.-|...+.
T Consensus       822 kam~fmFeyig~~s~dYv-----------------------------------y~itPlleDAltDrD~vhRqta~nvI~  866 (975)
T COG5181         822 KAMCFMFEYIGQASLDYV-----------------------------------YSITPLLEDALTDRDPVHRQTAMNVIR  866 (975)
T ss_pred             HHHHHHHHHHHHHHHHHH-----------------------------------HHhhHHHHhhhcccchHHHHHHHHHHH
Confidence            88777632  11111111                                   113444555667788888999999999


Q ss_pred             hccCCCccceeeecCCcHHHHHHHHh----hcchhhhhhHHHHHHHHhh
Q 005282          460 HLCAPDDCKTIFIDNNGLELLLGLLE----STSVKQREESSVALYKLAT  504 (704)
Q Consensus       460 ~l~~~~~~~~~l~~~~~i~~L~~ll~----~~~~~~~~~a~~~L~~L~~  504 (704)
                      +|+-+...-   ...++.-+|+.++=    ...|.++..--..+..++.
T Consensus       867 Hl~Lnc~gt---g~eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~  912 (975)
T COG5181         867 HLVLNCPGT---GDEDAAIHLLNLLWPNILEPSPHVIQSFDEGMESFAT  912 (975)
T ss_pred             HHhcCCCCc---ccHHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHH
Confidence            996542111   11223333444332    3556666555444444433

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=97.93  E-value=0.0014  Score=68.28  Aligned_cols=370  Identities=17%  Similarity=0.111  Sum_probs=204.8

Q ss_pred             ChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHH
Q 005282           93 AVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAA  172 (704)
Q Consensus        93 ~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~  172 (704)
                      ++..+++-+..+..          .+++....+|.-+....+....   .-..+.+.+++.....        .-+..+.
T Consensus        97 ~~~~~~~~~~tps~----------~~q~~~~~~l~~~~~~~~~~~~---~~~l~~l~~ll~~~~~--------~~~~~aa  155 (569)
T KOG1242|consen   97 IIEILLEELDTPSK----------SVQRAVSTCLPPLVVLSKGLSG---EYVLELLLELLTSTKI--------AERAGAA  155 (569)
T ss_pred             HHHHHHHhcCCCcH----------HHHHHHHHHhhhHHHHhhccCH---HHHHHHHHHHhccccH--------HHHhhhh
Confidence            46777777777765          8888888888777722221110   1134556666664433        6677888


Q ss_pred             HHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHH-HHHHHHHhccCCchhhHHhHhcCChHHH---HHhhcCCC
Q 005282          173 DAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRA-AAGALRTLAFKNDENKKLIVECNALPTL---VLMLRSED  248 (704)
Q Consensus       173 ~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~-a~~~L~~l~~~~~~~~~~~~~~~~i~~L---~~lL~~~~  248 (704)
                      +.++.+..+..  -..+.+.+++..+...+.+.....++. +.-+....+. +-.   ...+..+++.+   +.-..+..
T Consensus       156 ~~~ag~v~g~~--i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~-~Lg---~~~EPyiv~~lp~il~~~~d~~  229 (569)
T KOG1242|consen  156 YGLAGLVNGLG--IESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQG-NLG---PPFEPYIVPILPSILTNFGDKI  229 (569)
T ss_pred             HHHHHHHcCcH--HhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHH-hcC---CCCCchHHhhHHHHHHHhhccc
Confidence            88888875433  445667788889998888765544443 3333333322 111   22344444444   44445677


Q ss_pred             HHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhh
Q 005282          249 ASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEML  328 (704)
Q Consensus       249 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll  328 (704)
                      ..+|..+..+...+...-+...    -.-+++.++.-+....++....++..++.++... ..+.......++|.+...|
T Consensus       230 ~~Vr~Aa~~a~kai~~~~~~~a----VK~llpsll~~l~~~kWrtK~aslellg~m~~~a-p~qLs~~lp~iiP~lsevl  304 (569)
T KOG1242|consen  230 NKVREAAVEAAKAIMRCLSAYA----VKLLLPSLLGSLLEAKWRTKMASLELLGAMADCA-PKQLSLCLPDLIPVLSEVL  304 (569)
T ss_pred             hhhhHHHHHHHHHHHHhcCcch----hhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhc-hHHHHHHHhHhhHHHHHHH
Confidence            8888888877766653322111    1224555554444447888899999999887643 3344455578999999999


Q ss_pred             CCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHccc----CCchhhH---HHhhC
Q 005282          329 QSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLAD----NEDNVAD---LVRVG  401 (704)
Q Consensus       329 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~----~~~~~~~---l~~~g  401 (704)
                      .+..+++++.+..+|.+++...++...   ...++.|++.+.+.+-.+.+ +...|..-+-    .+.....   +++.|
T Consensus       305 ~DT~~evr~a~~~~l~~~~svidN~dI---~~~ip~Lld~l~dp~~~~~e-~~~~L~~ttFV~~V~~psLalmvpiL~R~  380 (569)
T KOG1242|consen  305 WDTKPEVRKAGIETLLKFGSVIDNPDI---QKIIPTLLDALADPSCYTPE-CLDSLGATTFVAEVDAPSLALMVPILKRG  380 (569)
T ss_pred             ccCCHHHHHHHHHHHHHHHHhhccHHH---HHHHHHHHHHhcCcccchHH-HHHhhcceeeeeeecchhHHHHHHHHHHH
Confidence            999999999999999999876554431   12456666666654433322 2222221110    1111111   11111


Q ss_pred             CcccccccccccccchHHHHHHHHHHH------HHhhcchhHHHHHHHhhccHHHHHHHHHHHHhccCCCccceeeecCC
Q 005282          402 GVQKLQDGEFTVQPTKDCVARTLKRLE------EKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPDDCKTIFIDNN  475 (704)
Q Consensus       402 ~i~~l~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~  475 (704)
                      .-++    .........-+.+.+..+.      ..+.+.+++.+-..+.+..|++|.-++.+|+.+.+.......   .+
T Consensus       381 l~eR----st~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f---~d  453 (569)
T KOG1242|consen  381 LAER----STSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSF---DD  453 (569)
T ss_pred             Hhhc----cchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcc---cc
Confidence            1111    0000000000111111111      111223444444455556799999999999888543333322   45


Q ss_pred             cHHHHHHHHhhcc-hhhhhhHHHHHHHHhhh
Q 005282          476 GLELLLGLLESTS-VKQREESSVALYKLATK  505 (704)
Q Consensus       476 ~i~~L~~ll~~~~-~~~~~~a~~~L~~L~~~  505 (704)
                      .+|.+...+.+.. ...+.-++..|......
T Consensus       454 ~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~  484 (569)
T KOG1242|consen  454 LIPELSETLTSEKSLVDRSGAAQDLSEVLAG  484 (569)
T ss_pred             cccHHHHhhccchhhhhhHHHhhhHHHHHhc
Confidence            6777777776532 22344555555555443

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=97.91  E-value=0.00066  Score=71.54  Aligned_cols=276  Identities=18%  Similarity=0.185  Sum_probs=172.2

Q ss_pred             HHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHHHHHcCCcHHHHH
Q 005282           72 SHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQIIVDTGALPHLVS  150 (704)
Q Consensus        72 ~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~~~~g~l~~L~~  150 (704)
                      +.+|.-+++++.....+....++..|+.+-.-...........+..+..+|+++|+|+. .++..|+.+.+.|+.+.++.
T Consensus         2 L~~LRiLsRd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~   81 (446)
T PF10165_consen    2 LETLRILSRDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCE   81 (446)
T ss_pred             HHHHHHHccCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHH
Confidence            44556666777666777666667777666511110000011125699999999999999 99999999999999999999


Q ss_pred             HHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhc-cCCcHHHHHHhc----------C-------CCHHHHHH
Q 005282          151 LLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRV-EDGIPPLVELLK----------F-------VDVKVQRA  212 (704)
Q Consensus       151 lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~ll~----------~-------~~~~~~~~  212 (704)
                      .|+........   +++.......|.-++......+..+++ .+++..+...+.          .       .+......
T Consensus        82 ~Lk~~~~~~~~---~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~E  158 (446)
T PF10165_consen   82 RLKNYSDSSQP---SDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSE  158 (446)
T ss_pred             HHHcccccCCC---hhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHH
Confidence            99987443111   267777788777777666666655555 477777776654          0       13456778


Q ss_pred             HHHHHHHhccCCchhhHHhHhcCChHHHHHhhc---------CCCHHHHHHHHHHHHHHhcCChhh-------HHH----
Q 005282          213 AAGALRTLAFKNDENKKLIVECNALPTLVLMLR---------SEDASVHFEAVGVIGNLVHSSPSI-------KKE----  272 (704)
Q Consensus       213 a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~---------~~~~~v~~~a~~~L~~l~~~~~~~-------~~~----  272 (704)
                      ++..+.|+....+.... -.....++.++.++.         .+.......++.+|.|+--.+...       ...    
T Consensus       159 iLKllFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~  237 (446)
T PF10165_consen  159 ILKLLFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPE  237 (446)
T ss_pred             HHHHHHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCC
Confidence            88899999765444333 111223344443322         123466777888888773111110       000    


Q ss_pred             HHHcCCHHHHHHHhcC----C----ChhHHHHHHHHHHHHhccCCcchHHHHh----------------cCChHHHHHhh
Q 005282          273 VILAGALQPVIGLLSS----S----CSESKREAALLLGQFAAADSNSKVHIVQ----------------RGAVRPLIEML  328 (704)
Q Consensus       273 ~~~~~~l~~L~~ll~~----~----~~~~~~~a~~~L~~l~~~~~~~~~~~~~----------------~~~i~~L~~ll  328 (704)
                      ......+..|+.+|..    .    -.+.....+.+|.+++..+...+..+..                ..+-..|++++
T Consensus       238 ~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLm  317 (446)
T PF10165_consen  238 GDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLM  317 (446)
T ss_pred             CCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHh
Confidence            0112345566666631    1    1244566777788887765544444322                23557799999


Q ss_pred             CCCCHHHHHHHHHHHHHhhcCCc
Q 005282          329 QSPDSQLKEMSAFALGRLAQDTH  351 (704)
Q Consensus       329 ~~~~~~v~~~a~~~L~~l~~~~~  351 (704)
                      .+..+.++..+...|..||..+.
T Consensus       318 t~~~~~~k~~vaellf~Lc~~d~  340 (446)
T PF10165_consen  318 TSPDPQLKDAVAELLFVLCKEDA  340 (446)
T ss_pred             CCCCchHHHHHHHHHHHHHhhhH
Confidence            99889999999999999986554

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=97.89  E-value=2.1e-05  Score=51.81  Aligned_cols=41  Identities=44%  Similarity=0.615  Sum_probs=38.1

Q ss_pred             CchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhc
Q 005282          224 NDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVH  264 (704)
Q Consensus       224 ~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~  264 (704)
                      +++++..+++.|+++.|+++|.++++.+++.|+|+|+||+.
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            46788999999999999999999999999999999999973

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.89  E-value=0.003  Score=66.44  Aligned_cols=260  Identities=15%  Similarity=0.179  Sum_probs=162.3

Q ss_pred             HHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcH
Q 005282          117 EVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIP  196 (704)
Q Consensus       117 ~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~  196 (704)
                      ....-|+.+++|+.+. +++..+.     +-+-++|.+.+..      +-++..++.+|..+...+|+.   +-..+...
T Consensus       126 ~fv~LAL~~I~niG~r-e~~ea~~-----~DI~KlLvS~~~~------~~vkqkaALclL~L~r~spDl---~~~~~W~~  190 (938)
T KOG1077|consen  126 TFVCLALHCIANIGSR-EMAEAFA-----DDIPKLLVSGSSM------DYVKQKAALCLLRLFRKSPDL---VNPGEWAQ  190 (938)
T ss_pred             HHHHHHHHHHHhhccH-hHHHHhh-----hhhHHHHhCCcch------HHHHHHHHHHHHHHHhcCccc---cChhhHHH
Confidence            6777888888888732 3333333     2333667666552      378889999999998877653   33346688


Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhc-------------CCCHHHHHHHHHHHHHHh
Q 005282          197 PLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLR-------------SEDASVHFEAVGVIGNLV  263 (704)
Q Consensus       197 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~-------------~~~~~v~~~a~~~L~~l~  263 (704)
                      .++.+|.+.+-.+..++...+..++..+++....-.-. .+..|.....             -+.|..+...+++|.+.-
T Consensus       191 riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~-avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p  269 (938)
T KOG1077|consen  191 RIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPL-AVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYP  269 (938)
T ss_pred             HHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHH-HHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCC
Confidence            99999999988888889999998987666544322110 1222222211             245788888888888773


Q ss_pred             cCC-hhhHHHHHHcCCHHHHHHHhcCC--ChhH-----HHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHH
Q 005282          264 HSS-PSIKKEVILAGALQPVIGLLSSS--CSES-----KREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQL  335 (704)
Q Consensus       264 ~~~-~~~~~~~~~~~~l~~L~~ll~~~--~~~~-----~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v  335 (704)
                      ... +..+..+  ..+++.++...+.+  ...+     +...+.-.-+++.+.+.....+  ...+..|-.++.+.+..+
T Consensus       270 ~~~D~~~r~~l--~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll--~~~~~~Lg~fls~rE~Ni  345 (938)
T KOG1077|consen  270 TPEDPSTRARL--NEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELL--SRAVNQLGQFLSHRETNI  345 (938)
T ss_pred             CCCCchHHHHH--HHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHH--HHHHHHHHHHhhcccccc
Confidence            221 1111111  12333333333321  1112     1222223334444443333333  345788889999999999


Q ss_pred             HHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhc-CCChhHHHHHHHHHHHcccCCchhhHHHh
Q 005282          336 KEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLD-SKNGSLQHNAAFALYGLADNEDNVADLVR  399 (704)
Q Consensus       336 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~l~~  399 (704)
                      |.-|+..++.|+........+...  .+.++..|+ ..|.++++.|+..|..+|. .+|.+.|+.
T Consensus       346 RYLaLEsm~~L~ss~~s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD-~~Nak~IV~  407 (938)
T KOG1077|consen  346 RYLALESMCKLASSEFSIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCD-VSNAKQIVA  407 (938)
T ss_pred             hhhhHHHHHHHHhccchHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhc-hhhHHHHHH
Confidence            999999999999886655555443  667788887 7899999999999999864 444555544

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=97.86  E-value=6.2e-05  Score=76.01  Aligned_cols=197  Identities=15%  Similarity=0.071  Sum_probs=147.5

Q ss_pred             CchHHHHHHHHHHHhhc-CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhcc
Q 005282          114 YEHEVEKECAFALGLLA-VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVE  192 (704)
Q Consensus       114 ~d~~v~~~a~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~  192 (704)
                      +|..-...++-+|-.++ +-.-.|..+.+..+.+.|+++|++++-        -+...+...++|+.-.-.+.++.+...
T Consensus       401 ~d~l~~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Pei--------mi~~~~t~~icn~vv~fsnL~~~fL~~  472 (743)
T COG5369         401 QDDLDFVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEI--------MIEFPDTIDICNKVVPFSNLGAGFLEK  472 (743)
T ss_pred             chHHHHHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccc--------eeeccchhhhhheeeeccchHHHHHHh
Confidence            34444555666666666 445567788888999999999998654        455567778888887778889999999


Q ss_pred             CCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchh-hHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh---
Q 005282          193 DGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDEN-KKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPS---  268 (704)
Q Consensus       193 ~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~---  268 (704)
                      |++..|+.++.+.|..+|....|.++.+..+.+++ +-.+...-++..++.+.++++..|+..++..|.|+.-+...   
T Consensus       473 ~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEk  552 (743)
T COG5369         473 SIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEK  552 (743)
T ss_pred             hHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccc
Confidence            99999999999999999999999999998755544 44556677889999999999999999999999999854322   


Q ss_pred             hHHHHHHc----CCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhc
Q 005282          269 IKKEVILA----GALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQR  318 (704)
Q Consensus       269 ~~~~~~~~----~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~  318 (704)
                      ...-+.+.    -....++..+...++-.....+..|.+++..+...+..+.+.
T Consensus       553 skdv~~K~~p~~ylfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q  606 (743)
T COG5369         553 SKDVFIKATPRRYLFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQ  606 (743)
T ss_pred             cceeEEecChHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhH
Confidence            11111111    134566666777777777777888888887666655555443

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.84  E-value=0.00073  Score=72.05  Aligned_cols=242  Identities=15%  Similarity=0.111  Sum_probs=149.2

Q ss_pred             HHHHHHHHHHHhhcC-hhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHcCCc
Q 005282           67 AAKTASHALVEFAKN-EEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGAL  145 (704)
Q Consensus        67 ~~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l  145 (704)
                      .+.-.---+.+.+.. |...     -+++..++.=..++++          .+|..|++.++.+-... ...     -..
T Consensus        65 lKKlvyLYl~nYa~~~P~~a-----~~avnt~~kD~~d~np----------~iR~lAlrtm~~l~v~~-i~e-----y~~  123 (734)
T KOG1061|consen   65 LKKLVYLYLMNYAKGKPDLA-----ILAVNTFLKDCEDPNP----------LIRALALRTMGCLRVDK-ITE-----YLC  123 (734)
T ss_pred             HHHHHHHHHHHhhccCchHH-----HhhhhhhhccCCCCCH----------HHHHHHhhceeeEeehH-HHH-----HHH
Confidence            333334445555553 4432     2346666666666654          89988888887776321 111     134


Q ss_pred             HHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCc
Q 005282          146 PHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKND  225 (704)
Q Consensus       146 ~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~  225 (704)
                      .++...+++...        .++..++.+..++-..++   ......|.++.|..++.++++.+..+|+.+|..+....+
T Consensus       124 ~Pl~~~l~d~~~--------yvRktaa~~vakl~~~~~---~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~  192 (734)
T KOG1061|consen  124 DPLLKCLKDDDP--------YVRKTAAVCVAKLFDIDP---DLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHP  192 (734)
T ss_pred             HHHHHhccCCCh--------hHHHHHHHHHHHhhcCCh---hhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCC
Confidence            577777777665        888888888888875443   447788999999999999999999999999999986444


Q ss_pred             hhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHh
Q 005282          226 ENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFA  305 (704)
Q Consensus       226 ~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~  305 (704)
                      ..-........+..++..+...+..-+...+.++.+-...++.-     ....+..+...+.+.+..+...+..++.++.
T Consensus       193 ~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~e-----a~~i~~r~~p~Lqh~n~avvlsavKv~l~~~  267 (734)
T KOG1061|consen  193 SVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSRE-----AEDICERLTPRLQHANSAVVLSAVKVILQLV  267 (734)
T ss_pred             CCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchh-----HHHHHHHhhhhhccCCcceEeehHHHHHHHH
Confidence            31111122223444555555555555555555555544332211     1234566777777888888777777777776


Q ss_pred             ccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 005282          306 AADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLA  347 (704)
Q Consensus       306 ~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~  347 (704)
                      ...+. .....-..+-++|+.++...+ +++..+..-+.-+.
T Consensus       268 ~~~~~-~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil  307 (734)
T KOG1061|consen  268 KYLKQ-VNELLFKKVAPPLVTLLSSES-EIQYVALRNINLIL  307 (734)
T ss_pred             HHHHH-HHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHH
Confidence            53333 333344566777888777766 66655555444443

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=97.82  E-value=0.0039  Score=63.97  Aligned_cols=258  Identities=33%  Similarity=0.394  Sum_probs=179.2

Q ss_pred             HHHHHhhhccCCchhhHHHHHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHh
Q 005282           49 AQIDILNSKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGL  128 (704)
Q Consensus        49 ~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~  128 (704)
                      ..++.+...+.+.  +..++..+.+.+..+..          .-.++.+..++.+.+.          .+|..|+.+|+.
T Consensus        43 ~~~~~~~~~l~~~--~~~vr~~aa~~l~~~~~----------~~av~~l~~~l~d~~~----------~vr~~a~~aLg~  100 (335)
T COG1413          43 EAADELLKLLEDE--DLLVRLSAAVALGELGS----------EEAVPLLRELLSDEDP----------RVRDAAADALGE  100 (335)
T ss_pred             hhHHHHHHHHcCC--CHHHHHHHHHHHhhhch----------HHHHHHHHHHhcCCCH----------HHHHHHHHHHHc
Confidence            3444455555443  45567777777554432          2347999999999875          899999998888


Q ss_pred             hcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCH-
Q 005282          129 LAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDV-  207 (704)
Q Consensus       129 l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~-  207 (704)
                      +-.          ...++.++.++..+.+       ..++..+.++|+.+-..           ..+..++..+.+... 
T Consensus       101 ~~~----------~~a~~~li~~l~~d~~-------~~vR~~aa~aL~~~~~~-----------~a~~~l~~~l~~~~~~  152 (335)
T COG1413         101 LGD----------PEAVPPLVELLENDEN-------EGVRAAAARALGKLGDE-----------RALDPLLEALQDEDSG  152 (335)
T ss_pred             cCC----------hhHHHHHHHHHHcCCc-------HhHHHHHHHHHHhcCch-----------hhhHHHHHHhccchhh
Confidence            773          2457899999986222       38999999999998642           226677777776552 


Q ss_pred             -----------HHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHc
Q 005282          208 -----------KVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILA  276 (704)
Q Consensus       208 -----------~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~  276 (704)
                                 .++..+...+..+-           +...++.+...+.+.+..++..+..+|+.+...+         .
T Consensus       153 ~a~~~~~~~~~~~r~~a~~~l~~~~-----------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~  212 (335)
T COG1413         153 SAAAALDAALLDVRAAAAEALGELG-----------DPEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------V  212 (335)
T ss_pred             hhhhhccchHHHHHHHHHHHHHHcC-----------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------h
Confidence                       34555555555554           2345788899999999999999999999998653         3


Q ss_pred             CCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhH
Q 005282          277 GALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGI  356 (704)
Q Consensus       277 ~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~  356 (704)
                      ...+.+...+.+.+..++..++.+|+.+-.           ......+...+.+.+..++..+...+..          .
T Consensus       213 ~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~-----------~~~~~~l~~~l~~~~~~~~~~~~~~~~~----------~  271 (335)
T COG1413         213 EAADLLVKALSDESLEVRKAALLALGEIGD-----------EEAVDALAKALEDEDVILALLAAAALGA----------L  271 (335)
T ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHhcccCc-----------chhHHHHHHHHhccchHHHHHHHHHhcc----------c
Confidence            345778888999999999999999887632           2357888888888887777666665551          0


Q ss_pred             HhhCChHHHHHhhcCCChhHHHHHHHHHHHcccCCchhhHH
Q 005282          357 AQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADL  397 (704)
Q Consensus       357 ~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l  397 (704)
                      ........+...+.+.+..++..+...+............+
T Consensus       272 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~  312 (335)
T COG1413         272 DLAEAALPLLLLLIDEANAVRLEAALALGQIGQEKAVAALL  312 (335)
T ss_pred             CchhhHHHHHHHhhcchhhHHHHHHHHHHhhcccchHHHHH
Confidence            11123345666667777788888888887776544433333

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=97.78  E-value=3.4e-05  Score=50.87  Aligned_cols=40  Identities=45%  Similarity=0.698  Sum_probs=36.4

Q ss_pred             ChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc
Q 005282           81 NEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA  130 (704)
Q Consensus        81 ~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~  130 (704)
                      ++++++.+++.|++|.|+++|++.+.          +++..|+|+|+||+
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~----------~v~~~a~~al~nl~   40 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPDP----------EVQEEAAWALGNLA   40 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSSH----------HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCCH----------HHHHHHHHHHHHHh
Confidence            46788999999999999999997755          99999999999987

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=97.74  E-value=0.00012  Score=58.33  Aligned_cols=68  Identities=26%  Similarity=0.287  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhc--CCCHHHHHHHHHHHHHhccCCchhhHHhHhc
Q 005282          167 VIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLK--FVDVKVQRAAAGALRTLAFKNDENKKLIVEC  234 (704)
Q Consensus       167 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~  234 (704)
                      ++...+..++|+|..++..+..+.+.|++|.++....  ..+|.++++|++++++|+.+++++++.+.+.
T Consensus         2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L   71 (102)
T PF09759_consen    2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL   71 (102)
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence            3567889999999999999999999999999999877  5689999999999999999999999987654

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.73  E-value=0.00024  Score=73.81  Aligned_cols=269  Identities=14%  Similarity=0.123  Sum_probs=161.1

Q ss_pred             HHHHHHHHHHHhhcCCh--hhHHHHHHc------C------CcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcC
Q 005282          117 EVEKECAFALGLLAVKP--EHQQIIVDT------G------ALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHEN  182 (704)
Q Consensus       117 ~v~~~a~~~L~~l~~~~--~~~~~~~~~------g------~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~  182 (704)
                      .-+..++..|.+++++.  ..|...++.      |      .....+.++++...        +++..|+..++-...-.
T Consensus       194 ~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~~Y~~A~~~lsD~~e--------~VR~aAvqlv~v~gn~~  265 (823)
T KOG2259|consen  194 HDREHAARGLIYLEHDQDFRVRTHAVEGLLALSEGFKLSKACYSRAVKHLSDDYE--------DVRKAAVQLVSVWGNRC  265 (823)
T ss_pred             ccHHHHHHHHHHHhcCCCcchHHHHHHHHHhhcccccccHHHHHHHHHHhcchHH--------HHHHHHHHHHHHHHhcC
Confidence            34555666677777333  333322211      1      24556666766655        88888865554443211


Q ss_pred             -----hhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhc-CCCHHHHHHHH
Q 005282          183 -----ANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLR-SEDASVHFEAV  256 (704)
Q Consensus       183 -----~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~v~~~a~  256 (704)
                           .+..+.-....++..+...+++.+..+|..|..+|+.+-.-+.+...+..+..++..+-+--. +..+.-.....
T Consensus       266 p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~G  345 (823)
T KOG2259|consen  266 PAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSG  345 (823)
T ss_pred             CCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcC
Confidence                 111112222345667778888888888888888888876533343333333222221111000 11111100000


Q ss_pred             -HHHHHHh------cCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhC
Q 005282          257 -GVIGNLV------HSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQ  329 (704)
Q Consensus       257 -~~L~~l~------~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~  329 (704)
                       |.=+.=.      +..++....++..|+...++.-+.+.--+++..|+..+..++...+....     ..+..|+.++.
T Consensus       346 ewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~-----~aldfLvDMfN  420 (823)
T KOG2259|consen  346 EWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAV-----RALDFLVDMFN  420 (823)
T ss_pred             CcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHH-----HHHHHHHHHhc
Confidence             0000000      01123344567788888999989888889999999999999987776544     35889999999


Q ss_pred             CCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcccCCchhhHHHhhCCc
Q 005282          330 SPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADLVRVGGV  403 (704)
Q Consensus       330 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~g~i  403 (704)
                      ++...+|..|..+|..++.+-.     ++...++.++..|.+.+.++|++.-..|.+.--..-.+-.++-.+.+
T Consensus       421 DE~~~VRL~ai~aL~~Is~~l~-----i~eeql~~il~~L~D~s~dvRe~l~elL~~~~~~d~~~i~m~v~~lL  489 (823)
T KOG2259|consen  421 DEIEVVRLKAIFALTMISVHLA-----IREEQLRQILESLEDRSVDVREALRELLKNARVSDLECIDMCVAHLL  489 (823)
T ss_pred             cHHHHHHHHHHHHHHHHHHHhe-----ecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence            9999999999999999987733     33345677889999999999999888888775444333333333333

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.72  E-value=0.00018  Score=74.74  Aligned_cols=258  Identities=17%  Similarity=0.163  Sum_probs=161.8

Q ss_pred             hHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CC--hh---hHHHHHHcCCcHHHHHHHhhccCCCCCcchhHH
Q 005282           94 VPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VK--PE---HQQIIVDTGALPHLVSLLKQYKNGGNSRALSGV  167 (704)
Q Consensus        94 i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~--~~---~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~  167 (704)
                      ....++++.+...          +||..|++++.-.+ ..  |.   .-+.=..-.++..++..+++-.-        .+
T Consensus       236 Y~~A~~~lsD~~e----------~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl--------~V  297 (823)
T KOG2259|consen  236 YSRAVKHLSDDYE----------DVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRAVRDRSL--------SV  297 (823)
T ss_pred             HHHHHHHhcchHH----------HHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHHHhcCce--------ee
Confidence            5667888888865          89988866665554 22  11   11111223467788888887664        78


Q ss_pred             HHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhc-CCCHHHHHHHHHHHHHh--cc-----------CCchhhHHhHh
Q 005282          168 IRRAADAITNLAHENANIKTRVRVEDGIPPLVELLK-FVDVKVQRAAAGALRTL--AF-----------KNDENKKLIVE  233 (704)
Q Consensus       168 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l--~~-----------~~~~~~~~~~~  233 (704)
                      +..|+.+|+.+-.-+++.-.+.....++..+-+.-. +.-+      -....+.  +.           ..++....++.
T Consensus       298 RV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrp------k~l~s~GewSsGk~~~advpsee~d~~~~siI~  371 (823)
T KOG2259|consen  298 RVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRP------KALYSSGEWSSGKEWNADVPSEEDDEEEESIIP  371 (823)
T ss_pred             eehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccch------HHHHhcCCcccCccccccCchhhcccccccccc
Confidence            888998888887555554333333332221111000 0111      1111111  00           01223345677


Q ss_pred             cCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchH
Q 005282          234 CNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKV  313 (704)
Q Consensus       234 ~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~  313 (704)
                      .|....++.-|.++-.+||..|+..++.|+.+.|....     ..+..|+.++++....++..|+.+|..++.+      
T Consensus       372 sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~-----~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~------  440 (823)
T KOG2259|consen  372 SGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAV-----RALDFLVDMFNDEIEVVRLKAIFALTMISVH------  440 (823)
T ss_pred             ccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHH-----HHHHHHHHHhccHHHHHHHHHHHHHHHHHHH------
Confidence            88889999999988899999999999999988776543     3578899999999999999999999998753      


Q ss_pred             HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcccCC
Q 005282          314 HIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNE  391 (704)
Q Consensus       314 ~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  391 (704)
                      ..++..-++.+...|.+.+.++|+.+-..|.+.-....+...+.    +..+++.|. .-|.-+.....++..+.++.
T Consensus       441 l~i~eeql~~il~~L~D~s~dvRe~l~elL~~~~~~d~~~i~m~----v~~lL~~L~-kyPqDrd~i~~cm~~iGqnH  513 (823)
T KOG2259|consen  441 LAIREEQLRQILESLEDRSVDVREALRELLKNARVSDLECIDMC----VAHLLKNLG-KYPQDRDEILRCMGRIGQNH  513 (823)
T ss_pred             heecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHH----HHHHHHHhh-hCCCCcHHHHHHHHHHhccC
Confidence            23444567888899999999999988888777554444333332    222333331 12233444556677776533

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=97.69  E-value=0.0028  Score=66.86  Aligned_cols=274  Identities=20%  Similarity=0.174  Sum_probs=176.4

Q ss_pred             HHHHhhhcChhhhhhhhccCCcHHHHHHh----------cCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHh
Q 005282          174 AITNLAHENANIKTRVRVEDGIPPLVELL----------KFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLM  243 (704)
Q Consensus       174 ~L~~l~~~~~~~~~~~~~~~~i~~L~~ll----------~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l  243 (704)
                      +|.-++. ++.....+....++..|.++.          ...++.+...|+.||+|+...++..|+.+.+.|+.+.++..
T Consensus         4 ~LRiLsR-d~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~   82 (446)
T PF10165_consen    4 TLRILSR-DPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCER   82 (446)
T ss_pred             HHHHHcc-CcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHH
Confidence            4444443 233344455555555565555          25678999999999999999999999999999999999999


Q ss_pred             hcCC-----CHHHHHHHHHHHHHHhcCChhhHHHHHH-cCCHHHHHHHhcC-----------------CChhHHHHHHHH
Q 005282          244 LRSE-----DASVHFEAVGVIGNLVHSSPSIKKEVIL-AGALQPVIGLLSS-----------------SCSESKREAALL  300 (704)
Q Consensus       244 L~~~-----~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~ll~~-----------------~~~~~~~~a~~~  300 (704)
                      |+..     +.++.....++|.-++...+..+..+++ .+++..+...+..                 .+.....+++.+
T Consensus        83 Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKl  162 (446)
T PF10165_consen   83 LKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKL  162 (446)
T ss_pred             HHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHH
Confidence            9865     7888889999998888777777766665 4777777765531                 122346678888


Q ss_pred             HHHHhccCCcchHHHHhcCChHHHHHhhC-------C--CCHHHHHHHHHHHHHhhcCCch--------hh----hHHhh
Q 005282          301 LGQFAAADSNSKVHIVQRGAVRPLIEMLQ-------S--PDSQLKEMSAFALGRLAQDTHN--------QA----GIAQD  359 (704)
Q Consensus       301 L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-------~--~~~~v~~~a~~~L~~l~~~~~~--------~~----~~~~~  359 (704)
                      +.|+....+.... -...+.++.++.++.       .  +-.....++..+|.|+-.....        ..    .....
T Consensus       163 lFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~  241 (446)
T PF10165_consen  163 LFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNM  241 (446)
T ss_pred             HHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCCh
Confidence            8998766554432 011233444433322       1  2245677788888877311100        00    01122


Q ss_pred             CChHHHHHhhcC-----CC---hhHHHHHHHHHHHcccCCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHh
Q 005282          360 GGILPLLKLLDS-----KN---GSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKV  431 (704)
Q Consensus       360 ~~~~~L~~ll~~-----~~---~~v~~~a~~~L~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~  431 (704)
                      ..+..|+++|+.     .+   .+...-.+.+|..++...+..+..++..+++...+.....+.                
T Consensus       242 ~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~----------------  305 (446)
T PF10165_consen  242 DVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEK----------------  305 (446)
T ss_pred             HHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCC----------------
Confidence            335556666532     11   234455566778888776777888888888887543222221                


Q ss_pred             hcchhHHHHHHHhhccHHHHHHHHHHHHhccCCC
Q 005282          432 HGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPD  465 (704)
Q Consensus       432 ~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  465 (704)
                      ...+-..|+.++.+..+.++..++..|..||...
T Consensus       306 ~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~~d  339 (446)
T PF10165_consen  306 GDTLRSRLLRLMTSPDPQLKDAVAELLFVLCKED  339 (446)
T ss_pred             CcchHHHHHHHhCCCCchHHHHHHHHHHHHHhhh
Confidence            1234557889998888999999999999997543

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=97.68  E-value=0.0029  Score=60.14  Aligned_cols=227  Identities=17%  Similarity=0.144  Sum_probs=155.5

Q ss_pred             hHHHHHHHHHHHHHhhcChhHHHHHHhC-CChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHc
Q 005282           64 DRAAAKTASHALVEFAKNEEIVSLIVDN-GAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDT  142 (704)
Q Consensus        64 ~~~~~~~a~~~L~~l~~~~~~~~~l~~~-g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~  142 (704)
                      ++..+.-|..++.++.-.++.|+.+... .+-..++++++..-.        +.+++....-++..++-++.+.+.+-+.
T Consensus       162 ~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg--------~~qlQY~SL~~iw~lTf~~~~aqdi~K~  233 (432)
T COG5231         162 DFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVG--------VKQLQYNSLIIIWILTFSKECAQDIDKM  233 (432)
T ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhh--------hhhhHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            3446677788888888888888887643 455667788877654        5589999999999999888888555443


Q ss_pred             -CCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChh-hhhhhhccCCcHHHHHHhcC---CCHHHHHHHHHHH
Q 005282          143 -GALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENAN-IKTRVRVEDGIPPLVELLKF---VDVKVQRAAAGAL  217 (704)
Q Consensus       143 -g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~~i~~L~~ll~~---~~~~~~~~a~~~L  217 (704)
                       +.+.-++++.+....       ..+.+-|+.++.|++...|. .-......|-+.+-++.|..   .|.+++...-..=
T Consensus       234 ~dli~dli~iVk~~~k-------eKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~  306 (432)
T COG5231         234 DDLINDLIAIVKERAK-------EKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIR  306 (432)
T ss_pred             HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHH
Confidence             456777777776554       37889999999999964432 11223333444555555542   3444332211111


Q ss_pred             HHh-------cc--------------CCc---------hhhHHhHhc--CChHHHHHhhcCCCHH-HHHHHHHHHHHHhc
Q 005282          218 RTL-------AF--------------KND---------ENKKLIVEC--NALPTLVLMLRSEDAS-VHFEAVGVIGNLVH  264 (704)
Q Consensus       218 ~~l-------~~--------------~~~---------~~~~~~~~~--~~i~~L~~lL~~~~~~-v~~~a~~~L~~l~~  264 (704)
                      ..+       +.              -+|         .+...+.+.  .++..|.+++++.++. ....||.-+..+.+
T Consensus       307 s~l~~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr  386 (432)
T COG5231         307 SRLVQNTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVR  386 (432)
T ss_pred             HHHHhhhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHH
Confidence            111       10              011         233444433  3578888889877766 55678888888888


Q ss_pred             CChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHh
Q 005282          265 SSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFA  305 (704)
Q Consensus       265 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~  305 (704)
                      ..|+...-+...|+=..++.++++++++++-+|+.++..+.
T Consensus       387 ~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i  427 (432)
T COG5231         387 ASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCI  427 (432)
T ss_pred             hCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence            88999988889999999999999999999999999987664

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=97.68  E-value=0.015  Score=59.85  Aligned_cols=350  Identities=15%  Similarity=0.114  Sum_probs=186.7

Q ss_pred             hhHHHHHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHHHHH
Q 005282           63 TDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQIIVD  141 (704)
Q Consensus        63 ~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~~~  141 (704)
                      .+...+.+|+..|..+-++...        +...+++.+..+.+-.      +.-....-.++...+. .+++.+.++. 
T Consensus       202 ~~~isqYHalGlLyq~kr~dkm--------a~lklv~hf~~n~smk------nq~a~V~lvr~~~~ll~~n~q~~~q~r-  266 (898)
T COG5240         202 GNPISQYHALGLLYQSKRTDKM--------AQLKLVEHFRGNASMK------NQLAGVLLVRATVELLKENSQALLQLR-  266 (898)
T ss_pred             CChHHHHHHHHHHHHHhcccHH--------HHHHHHHHhhcccccc------cchhheehHHHHHHHHHhChHHHHHHH-
Confidence            3444566666666665543221        2345555555544200      0012223344555555 5666655544 


Q ss_pred             cCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 005282          142 TGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLA  221 (704)
Q Consensus       142 ~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~  221 (704)
                          |.|-..+++..+        -+...++.++..++..+-  ...+. ...+..|-.+|.+.....|..|+++|..|+
T Consensus       267 ----pfL~~wls~k~e--------mV~lE~Ar~v~~~~~~nv--~~~~~-~~~vs~L~~fL~s~rv~~rFsA~Riln~la  331 (898)
T COG5240         267 ----PFLNSWLSDKFE--------MVFLEAARAVCALSEENV--GSQFV-DQTVSSLRTFLKSTRVVLRFSAMRILNQLA  331 (898)
T ss_pred             ----HHHHHHhcCcch--------hhhHHHHHHHHHHHHhcc--CHHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence                555555555433        566777777777775441  11111 234667777888888999999999999999


Q ss_pred             cCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHH
Q 005282          222 FKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLL  301 (704)
Q Consensus       222 ~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L  301 (704)
                      +..|+... .+    =+.+-.++.+.+..+-..|..+|..-  ++++....++     ..+..++.+-+..-+..++.++
T Consensus       332 m~~P~kv~-vc----N~evEsLIsd~Nr~IstyAITtLLKT--Gt~e~idrLv-----~~I~sfvhD~SD~FKiI~ida~  399 (898)
T COG5240         332 MKYPQKVS-VC----NKEVESLISDENRTISTYAITTLLKT--GTEETIDRLV-----NLIPSFVHDMSDGFKIIAIDAL  399 (898)
T ss_pred             hhCCceee-ec----ChhHHHHhhcccccchHHHHHHHHHc--CchhhHHHHH-----HHHHHHHHhhccCceEEeHHHH
Confidence            75443211 11    12344455666666655555555433  2333333222     2222333333333333444455


Q ss_pred             HHHhccCCcchHHHHhcCChHHHHHhhC-CCCHHHHHHHHHHHHHhhcCC-chhhhHHhhCChHHHHHhhcCC-ChhHHH
Q 005282          302 GQFAAADSNSKVHIVQRGAVRPLIEMLQ-SPDSQLKEMSAFALGRLAQDT-HNQAGIAQDGGILPLLKLLDSK-NGSLQH  378 (704)
Q Consensus       302 ~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~L~~ll~~~-~~~v~~  378 (704)
                      ..++-..+..+..     .+..|...|. .+..+.+..+..++..+.... +.+...     +..|+..+.+. -+++..
T Consensus       400 rsLsl~Fp~k~~s-----~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEra-----Le~LC~fIEDcey~~I~v  469 (898)
T COG5240         400 RSLSLLFPSKKLS-----YLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKERA-----LEVLCTFIEDCEYHQITV  469 (898)
T ss_pred             HHHHhhCcHHHHH-----HHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHHH-----HHHHHHHHhhcchhHHHH
Confidence            5554334433332     3555666554 466788888888888777654 333332     34566665432 233333


Q ss_pred             HHHHHHHHcccCCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHHHHHHH
Q 005282          379 NAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLAL  458 (704)
Q Consensus       379 ~a~~~L~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L  458 (704)
                      ..+.+|+.=.-...+                                      .+..+.++.+-+--++.-++.+|..+|
T Consensus       470 rIL~iLG~EgP~a~~--------------------------------------P~~yvrhIyNR~iLEN~ivRsaAv~aL  511 (898)
T COG5240         470 RILGILGREGPRAKT--------------------------------------PGKYVRHIYNRLILENNIVRSAAVQAL  511 (898)
T ss_pred             HHHHHhcccCCCCCC--------------------------------------cchHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            333333222100000                                      011222333334446778899999999


Q ss_pred             HhccCCCccceeeecCCcHHHHHHHHhhcchhhhhhHHHHHHHHhh
Q 005282          459 AHLCAPDDCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLAT  504 (704)
Q Consensus       459 ~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~  504 (704)
                      ..++.+......  -......|.+.+.+.+.++|..|+.+|.+|-.
T Consensus       512 skf~ln~~d~~~--~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~  555 (898)
T COG5240         512 SKFALNISDVVS--PQSVENALKRCLNDQDDEVRDRASFLLRNMRL  555 (898)
T ss_pred             HHhccCcccccc--HHHHHHHHHHHhhcccHHHHHHHHHHHHhhhh
Confidence            888655443332  23345567788888999999999999988753

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.65  E-value=0.00019  Score=57.06  Aligned_cols=86  Identities=34%  Similarity=0.418  Sum_probs=69.2

Q ss_pred             cHHHHHHh-cCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 005282          195 IPPLVELL-KFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEV  273 (704)
Q Consensus       195 i~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~  273 (704)
                      ++.|++.+ +++++.++..++.+|+.+..           ...++.|..+++++++.++..|+++|+.+-          
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------   59 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELGD-----------PEAIPALIELLKDEDPMVRRAAARALGRIG----------   59 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCTH-----------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcCC-----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence            57889988 78999999999999995542           135899999999999999999999999873          


Q ss_pred             HHcCCHHHHHHHhcCCCh-hHHHHHHHHHH
Q 005282          274 ILAGALQPVIGLLSSSCS-ESKREAALLLG  302 (704)
Q Consensus       274 ~~~~~l~~L~~ll~~~~~-~~~~~a~~~L~  302 (704)
                       ....++.|..++.+++. .++..|+.+|+
T Consensus        60 -~~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   60 -DPEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             -HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             -CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence             23478899998877654 45888888774

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=97.64  E-value=0.00056  Score=65.81  Aligned_cols=184  Identities=19%  Similarity=0.171  Sum_probs=116.1

Q ss_pred             cCCChhHHHHHHHHHHHHhccC--CcchHHHHhc--CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCCh
Q 005282          287 SSSCSESKREAALLLGQFAAAD--SNSKVHIVQR--GAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGI  362 (704)
Q Consensus       287 ~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~--~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~  362 (704)
                      .+.+++.+..++.-|..++.++  ......+...  .++..+...+.+....+...|+.++..++......-.-.-...+
T Consensus        17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l   96 (228)
T PF12348_consen   17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILL   96 (228)
T ss_dssp             T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence            5678999999999999998766  2333333221  56677888888777889999999999999765544443445677


Q ss_pred             HHHHHhhcCCChhHHHHHHHHHHHcccCCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHH
Q 005282          363 LPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYL  442 (704)
Q Consensus       363 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l  442 (704)
                      +.|++.+.+++..++..|..+|..+...-.....+                                     ..+.+...
T Consensus        97 ~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~-------------------------------------~~~~l~~~  139 (228)
T PF12348_consen   97 PPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI-------------------------------------LLEILSQG  139 (228)
T ss_dssp             HHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH-------------------------------------HHHHHHHH
T ss_pred             HHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH-------------------------------------HHHHHHHH
Confidence            88999999989999999999999997643311111                                     12345556


Q ss_pred             HhhccHHHHHHHHHHHHhccCCCc-cceeeecC----CcHHHHHHHHhhcchhhhhhHHHHHHHHhhhcC
Q 005282          443 LRVADRAVKRRVTLALAHLCAPDD-CKTIFIDN----NGLELLLGLLESTSVKQREESSVALYKLATKAT  507 (704)
Q Consensus       443 l~~~~~~v~~~a~~~L~~l~~~~~-~~~~l~~~----~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~  507 (704)
                      ..+.++.++..++..+..+..... ....+...    ..++.+..++.++++++|..|..++..+.+..+
T Consensus       140 ~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~  209 (228)
T PF12348_consen  140 LKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFP  209 (228)
T ss_dssp             TT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-
T ss_pred             HhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
Confidence            678899999999999988854332 22222222    356677788889999999999999999877654

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.60  E-value=0.0092  Score=62.94  Aligned_cols=156  Identities=21%  Similarity=0.263  Sum_probs=108.4

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhc-CCChhHHHHHHHHHHHHhccCCcchHHH
Q 005282          237 LPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLS-SSCSESKREAALLLGQFAAADSNSKVHI  315 (704)
Q Consensus       237 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~  315 (704)
                      +..|-++|.+....+|..++..++.++.. .....++...  .+.++..|+ ..+.++++.|+..|..+|  +.++...+
T Consensus       331 ~~~Lg~fls~rE~NiRYLaLEsm~~L~ss-~~s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mc--D~~Nak~I  405 (938)
T KOG1077|consen  331 VNQLGQFLSHRETNIRYLALESMCKLASS-EFSIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMC--DVSNAKQI  405 (938)
T ss_pred             HHHHHHHhhcccccchhhhHHHHHHHHhc-cchHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHh--chhhHHHH
Confidence            55666777777888888888888888865 3333333333  677788887 778899999999999998  44555443


Q ss_pred             HhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCc-hh--------------hhHHhhCChHHHHHhhcCCChhHHHHH
Q 005282          316 VQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTH-NQ--------------AGIAQDGGILPLLKLLDSKNGSLQHNA  380 (704)
Q Consensus       316 ~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~--------------~~~~~~~~~~~L~~ll~~~~~~v~~~a  380 (704)
                           +.-|+..+.+.+..+|+....=++-|+..-. .-              ...+.++....+++.. -.+++++..|
T Consensus       406 -----V~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLiriagd~vsdeVW~RvvQiV-vNnedlq~ya  479 (938)
T KOG1077|consen  406 -----VAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAGDYVSDEVWYRVVQIV-VNNEDLQGYA  479 (938)
T ss_pred             -----HHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccHHHHHHhheeE-ecchhhhHHH
Confidence                 6678888888888898887777777764311 10              0112223333344333 2478899999


Q ss_pred             HHHHHHcccCCchhhHHHhhCCc
Q 005282          381 AFALYGLADNEDNVADLVRVGGV  403 (704)
Q Consensus       381 ~~~L~~l~~~~~~~~~l~~~g~i  403 (704)
                      +..+...-+.+...+.+++.||.
T Consensus       480 ak~~fe~Lq~~a~hE~mVKvggy  502 (938)
T KOG1077|consen  480 AKRLFEYLQKPACHENMVKVGGY  502 (938)
T ss_pred             HHHHHHHHhhhHHHHHHHHhhhh
Confidence            99998888888888888887763

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=97.59  E-value=0.06  Score=55.69  Aligned_cols=324  Identities=19%  Similarity=0.144  Sum_probs=188.3

Q ss_pred             HHHHHHHHHhhc-ChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-C--ChhhHHHHHHcCC
Q 005282           69 KTASHALVEFAK-NEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-V--KPEHQQIIVDTGA  144 (704)
Q Consensus        69 ~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~--~~~~~~~~~~~g~  144 (704)
                      ..-.++...+.. ++.....+     .|.|-..|++...          -|..++++++..++ .  .++..+.     .
T Consensus       245 V~lvr~~~~ll~~n~q~~~q~-----rpfL~~wls~k~e----------mV~lE~Ar~v~~~~~~nv~~~~~~~-----~  304 (898)
T COG5240         245 VLLVRATVELLKENSQALLQL-----RPFLNSWLSDKFE----------MVFLEAARAVCALSEENVGSQFVDQ-----T  304 (898)
T ss_pred             eehHHHHHHHHHhChHHHHHH-----HHHHHHHhcCcch----------hhhHHHHHHHHHHHHhccCHHHHHH-----H
Confidence            333444444433 45555544     6777777777654          79999999999988 3  3333332     4


Q ss_pred             cHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCC
Q 005282          145 LPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKN  224 (704)
Q Consensus       145 l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~  224 (704)
                      ++.|-.+|+++..        ..+..|+.+|..++...|..-     .-+=+-+-.++.+.+..+-..|+..|..-.  .
T Consensus       305 vs~L~~fL~s~rv--------~~rFsA~Riln~lam~~P~kv-----~vcN~evEsLIsd~Nr~IstyAITtLLKTG--t  369 (898)
T COG5240         305 VSSLRTFLKSTRV--------VLRFSAMRILNQLAMKYPQKV-----SVCNKEVESLISDENRTISTYAITTLLKTG--T  369 (898)
T ss_pred             HHHHHHHHhcchH--------HHHHHHHHHHHHHHhhCCcee-----eecChhHHHHhhcccccchHHHHHHHHHcC--c
Confidence            5677788888776        889999999999997665421     112234556667777777777777666543  5


Q ss_pred             chhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHh-cCCChhHHHHHHHHHHH
Q 005282          225 DENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLL-SSSCSESKREAALLLGQ  303 (704)
Q Consensus       225 ~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~~~~~a~~~L~~  303 (704)
                      ++....++.     .+..++++-++..+.-+..++..|+-..|.....     .+..|...| +.+.-+-+..++.++..
T Consensus       370 ~e~idrLv~-----~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s-----~l~FL~~~L~~eGg~eFK~~~Vdaisd  439 (898)
T COG5240         370 EETIDRLVN-----LIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLS-----YLDFLGSSLLQEGGLEFKKYMVDAISD  439 (898)
T ss_pred             hhhHHHHHH-----HHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHH-----HHHHHHHHHHhcccchHHHHHHHHHHH
Confidence            555555543     3444444444444444455555554333433222     234444444 34556677888888888


Q ss_pred             HhccCCcchHHHHhcCChHHHHHhhCCC-CHHHHHHHHHHHHHhhcCCc-hhhhHHhhCChHHHHHhhcCCChhHHHHHH
Q 005282          304 FAAADSNSKVHIVQRGAVRPLIEMLQSP-DSQLKEMSAFALGRLAQDTH-NQAGIAQDGGILPLLKLLDSKNGSLQHNAA  381 (704)
Q Consensus       304 l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~  381 (704)
                      +....++.+..     +++.|+.++.+. -+++   +...|+-|....+ ....   ...+..+..-+--.+.-+|..|+
T Consensus       440 ~~~~~p~skEr-----aLe~LC~fIEDcey~~I---~vrIL~iLG~EgP~a~~P---~~yvrhIyNR~iLEN~ivRsaAv  508 (898)
T COG5240         440 AMENDPDSKER-----ALEVLCTFIEDCEYHQI---TVRILGILGREGPRAKTP---GKYVRHIYNRLILENNIVRSAAV  508 (898)
T ss_pred             HHhhCchHHHH-----HHHHHHHHHhhcchhHH---HHHHHHHhcccCCCCCCc---chHHHHHHHHHHHhhhHHHHHHH
Confidence            87766665543     467777777653 3333   4555555553211 1100   01123333333334667889999


Q ss_pred             HHHHHcccCCchh--hHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHHHHHHHH
Q 005282          382 FALYGLADNEDNV--ADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALA  459 (704)
Q Consensus       382 ~~L~~l~~~~~~~--~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~  459 (704)
                      .+|..++-+.+..  .+=                                     +...|-..+.+.+++++..|..+|.
T Consensus       509 ~aLskf~ln~~d~~~~~s-------------------------------------v~~~lkRclnD~DdeVRdrAsf~l~  551 (898)
T COG5240         509 QALSKFALNISDVVSPQS-------------------------------------VENALKRCLNDQDDEVRDRASFLLR  551 (898)
T ss_pred             HHHHHhccCccccccHHH-------------------------------------HHHHHHHHhhcccHHHHHHHHHHHH
Confidence            9998886533221  110                                     1223555678889999999999999


Q ss_pred             hccCCCccceee--ecCCcHHHHHHHHh
Q 005282          460 HLCAPDDCKTIF--IDNNGLELLLGLLE  485 (704)
Q Consensus       460 ~l~~~~~~~~~l--~~~~~i~~L~~ll~  485 (704)
                      ++-....+-..+  -+.|.||.|..-+-
T Consensus       552 ~~~~~da~~pl~~sd~~~dipsle~~l~  579 (898)
T COG5240         552 NMRLSDACEPLFSSDELGDIPSLELELI  579 (898)
T ss_pred             hhhhhhhhhccccccccCCcchhHHhhh
Confidence            984333332211  23366777665443

>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO)

Probab=97.59  E-value=0.00015  Score=59.65  Aligned_cols=50  Identities=28%  Similarity=0.494  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCChhhhccchhcHHHHHH
Q 005282          638 IMLMYELSEAYNATTLKQSCILFILEKFDKMRNKPWFFRLIRCVLPEIRN  687 (704)
Q Consensus       638 ~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~L~~~~~~~l~~  687 (704)
                      |+.++.+|..|++.+|.+.|.+||..||.++..+++|.+||.+.+..+++
T Consensus         1 C~~i~~~A~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~L~~~~l~~iL~   50 (103)
T PF07707_consen    1 CLSIYRLAEKYGLEELAEACLRFIAKNFNEVSKSDEFLELPFDQLIEILS   50 (103)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHTHHHHTTSHHHHCS-HHHHHHHHH
T ss_pred             ChhHHHHHHHcChHHHHHHHHHHHHHHHHHHccchhhhcCCHHHHHHHHh
Confidence            78999999999999999999999999999999999999999887777766

BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=97.59  E-value=0.0024  Score=71.25  Aligned_cols=281  Identities=15%  Similarity=0.031  Sum_probs=167.8

Q ss_pred             HHHHHHHHHHHhhc--ChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CC---hhhHHHHH
Q 005282           67 AAKTASHALVEFAK--NEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VK---PEHQQIIV  140 (704)
Q Consensus        67 ~~~~a~~~L~~l~~--~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~---~~~~~~~~  140 (704)
                      .+.+|+..|..++.  +.+.+    -.-++|.++.++.++..          +||..|+.+|..+. .-   +..-..+.
T Consensus       439 tK~~ALeLl~~lS~~i~de~~----LDRVlPY~v~l~~Ds~a----------~Vra~Al~Tlt~~L~~Vr~~~~~daniF  504 (1431)
T KOG1240|consen  439 TKLAALELLQELSTYIDDEVK----LDRVLPYFVHLLMDSEA----------DVRATALETLTELLALVRDIPPSDANIF  504 (1431)
T ss_pred             hHHHHHHHHHHHhhhcchHHH----HhhhHHHHHHHhcCchH----------HHHHHHHHHHHHHHhhccCCCcccchhh
Confidence            46778888888776  22221    12358999999999976          99999999999887 21   11112233


Q ss_pred             HcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHh
Q 005282          141 DTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTL  220 (704)
Q Consensus       141 ~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l  220 (704)
                      -.=.+|.|-.++.+....       -++..-+..|+.|+.....    +.+.+.-.....+++.++.+       ...+.
T Consensus       505 ~eYlfP~L~~l~~d~~~~-------~vRiayAsnla~LA~tA~r----Fle~~q~~~~~g~~n~~nse-------t~~~~  566 (1431)
T KOG1240|consen  505 PEYLFPHLNHLLNDSSAQ-------IVRIAYASNLAQLAKTAYR----FLELTQELRQAGMLNDPNSE-------TAPEQ  566 (1431)
T ss_pred             HhhhhhhhHhhhccCccc-------eehhhHHhhHHHHHHHHHH----HHHHHHHHHhcccccCcccc-------ccccc
Confidence            233567777777664221       5555666667777642211    11111111111122322222       00000


Q ss_pred             ccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHH
Q 005282          221 AFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALL  300 (704)
Q Consensus       221 ~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~  300 (704)
                      .  .......+. .++-+.+..++.++++.|++.-+..|.-||.-   ..+.-.+.=.+++|+.+|++.++.+|..-...
T Consensus       567 ~--~~~~~~~L~-~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~F---FGk~ksND~iLshLiTfLNDkDw~LR~aFfds  640 (1431)
T KOG1240|consen  567 N--YNTELQALH-HTVEQMVSSLLSDSPPIVKRALLESIIPLCVF---FGKEKSNDVILSHLITFLNDKDWRLRGAFFDS  640 (1431)
T ss_pred             c--cchHHHHHH-HHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH---hhhcccccchHHHHHHHhcCccHHHHHHHHhh
Confidence            0  011111111 12334566777788889999888888888732   11111122368899999999988887665555


Q ss_pred             HHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHH
Q 005282          301 LGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNA  380 (704)
Q Consensus       301 L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a  380 (704)
                      |..++..-   ...-.+..++|.|...|.++.+.|...|+.+|..|+...--+...+ ...++...-+|-+.+.-+|..+
T Consensus       641 I~gvsi~V---G~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v-~~i~~~v~PlL~hPN~WIR~~~  716 (1431)
T KOG1240|consen  641 IVGVSIFV---GWRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAV-KDILQDVLPLLCHPNLWIRRAV  716 (1431)
T ss_pred             ccceEEEE---eeeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHH-HHHHHhhhhheeCchHHHHHHH
Confidence            55443211   1112345678999999999999999999999999987654433222 1234445566778899999999


Q ss_pred             HHHHHHccc
Q 005282          381 AFALYGLAD  389 (704)
Q Consensus       381 ~~~L~~l~~  389 (704)
                      +.++...+.
T Consensus       717 ~~iI~~~~~  725 (1431)
T KOG1240|consen  717 LGIIAAIAR  725 (1431)
T ss_pred             HHHHHHHHh
Confidence            999988875

>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]

Probab=97.59  E-value=0.00025  Score=65.13  Aligned_cols=88  Identities=16%  Similarity=0.275  Sum_probs=66.5

Q ss_pred             CCCcccEEEEEcCeEeehhHHHHhhcCHHHHHhhcCCCCCCCCC--ceEcCCCCHHHHHHHHHHHhcCcccc---ChhhH
Q 005282          532 NPTLSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAK--DVEIPNIRWNVFELMMRFIYTGNVDV---SVDIA  606 (704)
Q Consensus       532 ~~~~~d~~~~~~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~--~i~l~~~~~~~~~~~l~~~Y~~~~~~---~~~~~  606 (704)
                      -....|+-++...+.|++||.+|++|||+|+.+.++........  .|..-+++...|..||+|+|+|..-.   ...+.
T Consensus       127 ~k~c~dldiiFkeTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~ag~dm~~feafLh~l~tgEfgmEd~~fqn~  206 (401)
T KOG2838|consen  127 RKVCGDLDIIFKETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKFAGFDMDAFEAFLHSLITGEFGMEDLGFQNS  206 (401)
T ss_pred             eeeeccceeeeeeccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhhhccChHHHHHHHHHHHhcccchhhcCCchH
Confidence            34567899999999999999999999999999988654322222  34455788999999999999997643   33456


Q ss_pred             HHHHHHHhhhChH
Q 005282          607 QDLLRAADQYLLE  619 (704)
Q Consensus       607 ~~ll~~A~~~~~~  619 (704)
                      .-|-.++.-|+..
T Consensus       207 diL~QL~edFG~~  219 (401)
T KOG2838|consen  207 DILEQLCEDFGCF  219 (401)
T ss_pred             HHHHHHHHhhCCc
Confidence            6666777777654

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=97.58  E-value=0.0042  Score=59.13  Aligned_cols=221  Identities=15%  Similarity=0.159  Sum_probs=141.0

Q ss_pred             HHHHHHHHHHHHhhhcChhhhhhhhccC-CcHHHHHHhcC--CCHHHHHHHHHHHHHhccCCchhhHHhHh-cCChHHHH
Q 005282          166 GVIRRAADAITNLAHENANIKTRVRVED-GIPPLVELLKF--VDVKVQRAAAGALRTLAFKNDENKKLIVE-CNALPTLV  241 (704)
Q Consensus       166 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~-~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~  241 (704)
                      -.+..|+.++.++.. .++.|......+ .-..++.+++.  ++..++.+.+-++|.++. ++...+.+-. ...+..++
T Consensus       164 lTrlfav~cl~~l~~-~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf-~~~~aqdi~K~~dli~dli  241 (432)
T COG5231         164 LTRLFAVSCLSNLEF-DVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTF-SKECAQDIDKMDDLINDLI  241 (432)
T ss_pred             HHHHHHHHHHhhhhh-hHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHH
Confidence            346678888888886 444555444444 45667777774  567899999999999997 6666544332 23466677


Q ss_pred             HhhcC-CCHHHHHHHHHHHHHHhcCCh-hhHHHHHHcCCHHHHHHHhcCC---ChhHHHHHHHHHHHHhcc---------
Q 005282          242 LMLRS-EDASVHFEAVGVIGNLVHSSP-SIKKEVILAGALQPVIGLLSSS---CSESKREAALLLGQFAAA---------  307 (704)
Q Consensus       242 ~lL~~-~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~l~~L~~ll~~~---~~~~~~~a~~~L~~l~~~---------  307 (704)
                      ++.+. ....|.+.++.++.|++...+ .......-.|-+..-+.+|...   +.+++...-..=..+...         
T Consensus       242 ~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~fD~  321 (432)
T COG5231         242 AIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIFDN  321 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence            77764 457889999999999986332 2333333344344444444322   333322211111111000         


Q ss_pred             ------------C---------CcchHHHHhc--CChHHHHHhhCCCCHH-HHHHHHHHHHHhhc-CCchhhhHHhhCCh
Q 005282          308 ------------D---------SNSKVHIVQR--GAVRPLIEMLQSPDSQ-LKEMSAFALGRLAQ-DTHNQAGIAQDGGI  362 (704)
Q Consensus       308 ------------~---------~~~~~~~~~~--~~i~~L~~ll~~~~~~-v~~~a~~~L~~l~~-~~~~~~~~~~~~~~  362 (704)
                                  +         ..+...+.+.  .++..|.++++...+. ....||.-+..+.. .++....+...|+-
T Consensus       322 Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k  401 (432)
T COG5231         322 YLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVK  401 (432)
T ss_pred             HHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhH
Confidence                        0         1223333333  4678899999876554 44567777777775 46677778888999


Q ss_pred             HHHHHhhcCCChhHHHHHHHHHHHcc
Q 005282          363 LPLLKLLDSKNGSLQHNAAFALYGLA  388 (704)
Q Consensus       363 ~~L~~ll~~~~~~v~~~a~~~L~~l~  388 (704)
                      +.+++++++++++|+.+|+.++..+.
T Consensus       402 ~~im~L~nh~d~~VkfeAl~a~q~~i  427 (432)
T COG5231         402 EIIMNLINHDDDDVKFEALQALQTCI  427 (432)
T ss_pred             HHHHHHhcCCCchhhHHHHHHHHHHH
Confidence            99999999999999999999988764

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=97.58  E-value=0.0008  Score=64.75  Aligned_cols=180  Identities=20%  Similarity=0.150  Sum_probs=115.7

Q ss_pred             cCCCHHHHHHHHHHHHHhccCC--chhhHHhHh--cCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCC
Q 005282          203 KFVDVKVQRAAAGALRTLAFKN--DENKKLIVE--CNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGA  278 (704)
Q Consensus       203 ~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~--~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~  278 (704)
                      .+.++..+..++..|..++.++  ......+..  ..++..+...+.+....+...|+.++..++.......... -..+
T Consensus        17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~-~~~~   95 (228)
T PF12348_consen   17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPY-ADIL   95 (228)
T ss_dssp             T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHH-HHHH
T ss_pred             CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHH-HHHH
Confidence            4678999999999999998755  223333322  1455677777777888899999999999986533332222 3357


Q ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCC-hHHHHHhhCCCCHHHHHHHHHHHHHhhcCCc-hhhhH
Q 005282          279 LQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGA-VRPLIEMLQSPDSQLKEMSAFALGRLAQDTH-NQAGI  356 (704)
Q Consensus       279 l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~-i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~  356 (704)
                      ++.|+..+.++...++..|..+|..++......      ..+ .+.+...+.+.++.+|..++..+..+..... ....+
T Consensus        96 l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~------~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l  169 (228)
T PF12348_consen   96 LPPLLKKLGDSKKFIREAANNALDAIIESCSYS------PKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVL  169 (228)
T ss_dssp             HHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--------HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG
T ss_pred             HHHHHHHHccccHHHHHHHHHHHHHHHHHCCcH------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhh
Confidence            889999999988888999999999998643301      112 5667777888999999999999999886544 22222


Q ss_pred             Hh----hCChHHHHHhhcCCChhHHHHHHHHHHHccc
Q 005282          357 AQ----DGGILPLLKLLDSKNGSLQHNAAFALYGLAD  389 (704)
Q Consensus       357 ~~----~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~  389 (704)
                      ..    ...++.+..++.+.+++||..|-.++..+..
T Consensus       170 ~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~  206 (228)
T PF12348_consen  170 QKSAFLKQLVKALVKLLSDADPEVREAARECLWALYS  206 (228)
T ss_dssp             --HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence            22    3456678888999999999999999999854

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=97.58  E-value=0.032  Score=62.07  Aligned_cols=252  Identities=16%  Similarity=0.184  Sum_probs=148.9

Q ss_pred             CChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCC-ChhHHHHHHHHHHHHhccCCcchH
Q 005282          235 NALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSS-CSESKREAALLLGQFAAADSNSKV  313 (704)
Q Consensus       235 ~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~  313 (704)
                      +++..|+..+++.+..|+..|+..++.++...|..    ....++...+.++.-. ++...+-++.+|+.++...=---.
T Consensus       341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~----Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps  416 (1133)
T KOG1943|consen  341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPE----LADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS  416 (1133)
T ss_pred             HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHH----HHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence            46777788888999999999999999999876632    2234566666655443 356678899999999853211110


Q ss_pred             HHHhcCChHHHHHhhC--------CCCHHHHHHHHHHHHHhhcCCchh--hhHHhhCChHHHHHhhcCCChhHHHHHHHH
Q 005282          314 HIVQRGAVRPLIEMLQ--------SPDSQLKEMSAFALGRLAQDTHNQ--AGIAQDGGILPLLKLLDSKNGSLQHNAAFA  383 (704)
Q Consensus       314 ~~~~~~~i~~L~~ll~--------~~~~~v~~~a~~~L~~l~~~~~~~--~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~  383 (704)
                      .+  ..+++.+++.+.        +....+|..||.++|.++......  ..+...=.-..|...+-+.+.++|+.|..+
T Consensus       417 ~l--~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAA  494 (1133)
T KOG1943|consen  417 LL--EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAA  494 (1133)
T ss_pred             HH--HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHH
Confidence            01  134566666553        234689999999999999654332  222211111123344566788899999999


Q ss_pred             HHHcccCCch----hhHHHhhCCcccccccccccccchHH---HHHHHHHHHHHhhcchhHHHHHH-HhhccHHHHHHHH
Q 005282          384 LYGLADNEDN----VADLVRVGGVQKLQDGEFTVQPTKDC---VARTLKRLEEKVHGRVLNHLLYL-LRVADRAVKRRVT  455 (704)
Q Consensus       384 L~~l~~~~~~----~~~l~~~g~i~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~L~~l-l~~~~~~v~~~a~  455 (704)
                      +....+-..+    ...+...+.+..        .....|   ++..+.... .+...+++.++.. +..-++.+++.++
T Consensus       495 lqE~VGR~~n~p~Gi~Lis~~dy~sV--------~~rsNcy~~l~~~ia~~~-~y~~~~f~~L~t~Kv~HWd~~irelaa  565 (1133)
T KOG1943|consen  495 LQENVGRQGNFPHGISLISTIDYFSV--------TNRSNCYLDLCVSIAEFS-GYREPVFNHLLTKKVCHWDVKIRELAA  565 (1133)
T ss_pred             HHHHhccCCCCCCchhhhhhcchhhh--------hhhhhHHHHHhHHHHhhh-hHHHHHHHHHHhcccccccHHHHHHHH
Confidence            9887753222    233332222221        111111   111111111 1122344444444 4556899999999


Q ss_pred             HHHHhccCCCccceeeecCCcHHHHHHHHhhcchhhhhhHHHHHHHHhh
Q 005282          456 LALAHLCAPDDCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLAT  504 (704)
Q Consensus       456 ~~L~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~  504 (704)
                      ++|.+|+.....   ....+.++.|+....+++...+.-+..+...+..
T Consensus       566 ~aL~~Ls~~~pk---~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~  611 (1133)
T KOG1943|consen  566 YALHKLSLTEPK---YLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIG  611 (1133)
T ss_pred             HHHHHHHHhhHH---hhcccchhhhhhhhcCCChHHhhhhHHHHHHHHH
Confidence            999998543221   1224567888888888777777655554444433

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.55  E-value=0.026  Score=65.02  Aligned_cols=287  Identities=18%  Similarity=0.120  Sum_probs=142.8

Q ss_pred             ChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCC-hhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHH
Q 005282           93 AVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVK-PEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRA  171 (704)
Q Consensus        93 ~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a  171 (704)
                      .||.|.++=-+++.          .|+.....++..|..+ ....+... ..++.-|+.-|.+.        .|.+|+.+
T Consensus       999 LIPrLyRY~yDP~~----------~Vq~aM~sIW~~Li~D~k~~vd~y~-neIl~eLL~~lt~k--------ewRVReas 1059 (1702)
T KOG0915|consen  999 LIPRLYRYQYDPDK----------KVQDAMTSIWNALITDSKKVVDEYL-NEILDELLVNLTSK--------EWRVREAS 1059 (1702)
T ss_pred             hhHHHhhhccCCcH----------HHHHHHHHHHHHhccChHHHHHHHH-HHHHHHHHHhccch--------hHHHHHHH
Confidence            47888887777654          7776666666666644 44444333 22334444333332        37999999


Q ss_pred             HHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHH---HHHHHHhccC--Cc---hhhHHhHhcCChHHHHH-
Q 005282          172 ADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAA---AGALRTLAFK--ND---ENKKLIVECNALPTLVL-  242 (704)
Q Consensus       172 ~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a---~~~L~~l~~~--~~---~~~~~~~~~~~i~~L~~-  242 (704)
                      |.+|..|..+.+.-...-.-......+++.+.+-...+|++|   +.+|..++..  +.   .....+. ..++|.|+. 
T Consensus      1060 clAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l-~~iLPfLl~~ 1138 (1702)
T KOG0915|consen 1060 CLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEAL-DIILPFLLDE 1138 (1702)
T ss_pred             HHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHH-HHHHHHHhcc
Confidence            999999997544322111112333444455544455666554   4455555421  11   1111111 123455443 


Q ss_pred             hhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHH-----------HHHHHHHHHhccCCcc
Q 005282          243 MLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKR-----------EAALLLGQFAAADSNS  311 (704)
Q Consensus       243 lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~-----------~a~~~L~~l~~~~~~~  311 (704)
                      -+-+.-+++|+.++.++..++.+.+...... -...++.|+.....-.+.+..           +++..++.-+..+...
T Consensus      1139 gims~v~evr~~si~tl~dl~Kssg~~lkP~-~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspm 1217 (1702)
T KOG0915|consen 1139 GIMSKVNEVRRFSIGTLMDLAKSSGKELKPH-FPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPM 1217 (1702)
T ss_pred             CcccchHHHHHHHHHHHHHHHHhchhhhcch-hhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcH
Confidence            1126678999999999999997654322111 134566666666554444422           2222221111111111


Q ss_pred             hHHH----------HhcCChHHHHHhhCCC-CHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHH
Q 005282          312 KVHI----------VQRGAVRPLIEMLQSP-DSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNA  380 (704)
Q Consensus       312 ~~~~----------~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a  380 (704)
                      ...+          .-...+|.+.++++.+ .-..+..++..+..|+..-.....-.....+..++..+++.++.+++..
T Consensus      1218 meTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~kaf 1297 (1702)
T KOG0915|consen 1218 METINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVRKAF 1297 (1702)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhccccccHHHHHHH
Confidence            1110          0012344444444432 2223333444444444210000000000112334555577899999999


Q ss_pred             HHHHHHccc--CCchhhHHHhh
Q 005282          381 AFALYGLAD--NEDNVADLVRV  400 (704)
Q Consensus       381 ~~~L~~l~~--~~~~~~~l~~~  400 (704)
                      +.+.+.|+.  .++..+.+++.
T Consensus      1298 AsAmG~L~k~Ss~dq~qKLie~ 1319 (1702)
T KOG0915|consen 1298 ASAMGYLAKFSSPDQMQKLIET 1319 (1702)
T ss_pred             HHHHHHHHhcCChHHHHHHHHH
Confidence            999999985  55566666653

>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]

Probab=97.55  E-value=0.00019  Score=57.77  Aligned_cols=87  Identities=23%  Similarity=0.370  Sum_probs=66.3

Q ss_pred             EEEEEcCeEeehhHHHHh-hcCHHHHHhhcCC---CCCCCCCceEcCCCCHHHHHHHHHHHhc-CccccC-hhhHHHHHH
Q 005282          538 VTFVVEGKQFYAHRICLL-ASSDAFRAMFDGG---YKEKNAKDVEIPNIRWNVFELMMRFIYT-GNVDVS-VDIAQDLLR  611 (704)
Q Consensus       538 ~~~~~~~~~~~~hk~iL~-~~s~~f~~~f~~~---~~e~~~~~i~l~~~~~~~~~~~l~~~Y~-~~~~~~-~~~~~~ll~  611 (704)
                      |.+-|||+.|.+-+..|. ....+|..++++.   ........+-+ |=++..|+.+|+|+-+ +.+..+ ......+++
T Consensus         1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fi-DRdp~~F~~IL~ylr~~~~l~~~~~~~~~~l~~   79 (94)
T PF02214_consen    1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFI-DRDPELFEYILNYLRTGGKLPIPDEICLEELLE   79 (94)
T ss_dssp             EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEE-SS-HHHHHHHHHHHHHTSSB---TTS-HHHHHH
T ss_pred             CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEe-ccChhhhhHHHHHHhhcCccCCCCchhHHHHHH
Confidence            578899999999999998 5578999999965   33344556655 5699999999999999 666654 567889999


Q ss_pred             HHhhhChHhH-HHHH
Q 005282          612 AADQYLLEGL-KRLC  625 (704)
Q Consensus       612 ~A~~~~~~~l-~~~c  625 (704)
                      -|.+|+++.+ ++.|
T Consensus        80 Ea~fy~l~~l~i~~c   94 (94)
T PF02214_consen   80 EAEFYGLDELFIEDC   94 (94)
T ss_dssp             HHHHHT-HHHHBHHC
T ss_pred             HHHHcCCCccccCCC
Confidence            9999999998 6655

They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=97.51  E-value=0.01  Score=65.47  Aligned_cols=332  Identities=17%  Similarity=0.109  Sum_probs=203.3

Q ss_pred             HHHHHHHHHHHhhc-CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCc
Q 005282          117 EVEKECAFALGLLA-VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGI  195 (704)
Q Consensus       117 ~v~~~a~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i  195 (704)
                      .++..++..+..++ ..++-...   . .+-+++..+...+-       ...+..++..++......+   ...++....
T Consensus       174 ~vr~k~ve~l~~v~~~~~~~~~~---~-~lv~l~~~l~~~d~-------~~sr~sacglf~~~~~~~~---~~~vk~elr  239 (759)
T KOG0211|consen  174 GVREKAVESLLKVAVGLPKEKLR---E-HLVPLLKRLATGDW-------FQSRLSACGLFGKLYVSLP---DDAVKRELR  239 (759)
T ss_pred             HHHHHHHHHHHHHHHhcChHHHH---H-HHHHHHHHccchhh-------hhcchhhhhhhHHhccCCC---hHHHHHHHH
Confidence            68899999998888 44432221   0 11233333332211       1344566666666653222   124445556


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHH
Q 005282          196 PPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVIL  275 (704)
Q Consensus       196 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~  275 (704)
                      +..-++.++.++.++..+..-+++++..-   .......++++.+..+..++...|+..|...+.++...-+...  =..
T Consensus       240 ~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~---~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~--d~~  314 (759)
T KOG0211|consen  240 PIVQSLCQDDTPMVRRAVASNLGNIAKVL---ESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD--DVV  314 (759)
T ss_pred             HHHHhhccccchhhHHHHHhhhHHHHHHH---HHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch--hhh
Confidence            66777788889999999999999988522   2266677899999999999999999999998888874321111  223


Q ss_pred             cCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcC--Cchh
Q 005282          276 AGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQD--THNQ  353 (704)
Q Consensus       276 ~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~  353 (704)
                      ..+.+.++....++++.++.........+...-..   ........+....+++....+.+..++.-...++..  .+..
T Consensus       315 ~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~---~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~  391 (759)
T KOG0211|consen  315 KSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGP---SATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCY  391 (759)
T ss_pred             hhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc---ccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccc
Confidence            45678888888898888887777666655432111   122234577788888888888888777777777643  3344


Q ss_pred             hhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHccc-CCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhh
Q 005282          354 AGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLAD-NEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVH  432 (704)
Q Consensus       354 ~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (704)
                      ..+..+..++.+..+..+.+..++...+.....++- .+       ....+..                           
T Consensus       392 ~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~-------k~~ti~~---------------------------  437 (759)
T KOG0211|consen  392 PNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILP-------KERTISE---------------------------  437 (759)
T ss_pred             cccchhhhhHHHHHHHhcccchHHHHHhccccccCccCC-------cCcCccc---------------------------
Confidence            555666667777777788888888877776666642 22       2222222                           


Q ss_pred             cchhHHHHHHHhhccHHHHHHHHHHHHhc-cCCCccceeeecCCcHHHHHHHHhhcchhhhhhHHHHHHHHhhhc
Q 005282          433 GRVLNHLLYLLRVADRAVKRRVTLALAHL-CAPDDCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLATKA  506 (704)
Q Consensus       433 ~~~~~~L~~ll~~~~~~v~~~a~~~L~~l-~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~  506 (704)
                        ..+.++.++.+..+.|+.+..+.+..+ ...+..........-++.+..+....+..++.+..+.+-.++...
T Consensus       438 --llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~  510 (759)
T KOG0211|consen  438 --LLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQL  510 (759)
T ss_pred             --cChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhh
Confidence              234455566666677777766665555 222211122223344555555555555555555555555555433

>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]

Probab=97.51  E-value=0.00047  Score=52.38  Aligned_cols=79  Identities=27%  Similarity=0.426  Sum_probs=62.9

Q ss_pred             EEEEE-cCeEeehhHHHHhhcCHHHHHhhcCCC--CCCCCCceEcCCCCHHHHHHHHHHH-----hcCc------cccCh
Q 005282          538 VTFVV-EGKQFYAHRICLLASSDAFRAMFDGGY--KEKNAKDVEIPNIRWNVFELMMRFI-----YTGN------VDVSV  603 (704)
Q Consensus       538 ~~~~~-~~~~~~~hk~iL~~~s~~f~~~f~~~~--~e~~~~~i~l~~~~~~~~~~~l~~~-----Y~~~------~~~~~  603 (704)
                      |.++. +|++|-..|.+- .-|+-.|+||+|.+  .+....++.+++++...++.+.+|+     |++.      .++++
T Consensus        19 VkLvS~Ddhefiikre~A-mtSgTiraml~gpg~~se~~~n~v~f~di~shiLeKvc~Yl~Yk~rY~~~s~eiPeF~Ipp   97 (112)
T KOG3473|consen   19 VKLVSSDDHEFIIKREHA-MTSGTIRAMLSGPGVFSEAEKNEVYFRDIPSHILEKVCEYLAYKVRYTNSSTEIPEFDIPP   97 (112)
T ss_pred             eEeecCCCcEEEEeehhh-hhhhHHHHHHcCCccccccccceEEeccchHHHHHHHHHHhhheeeeccccccCCCCCCCH
Confidence            44554 577888877654 48999999999764  5666678999999999999999998     3443      34789


Q ss_pred             hhHHHHHHHHhhhC
Q 005282          604 DIAQDLLRAADQYL  617 (704)
Q Consensus       604 ~~~~~ll~~A~~~~  617 (704)
                      +.+.+||.+|+++.
T Consensus        98 emaleLL~aAn~Le  111 (112)
T KOG3473|consen   98 EMALELLMAANYLE  111 (112)
T ss_pred             HHHHHHHHHhhhhc
Confidence            99999999999985

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=97.49  E-value=0.016  Score=54.07  Aligned_cols=199  Identities=28%  Similarity=0.262  Sum_probs=129.4

Q ss_pred             hCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHH
Q 005282           90 DNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIR  169 (704)
Q Consensus        90 ~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~  169 (704)
                      +..+++.|+..|...+.        ++-||..|..+|+++. .+         +.++.+-+..+++..        ++.+
T Consensus        65 ~~~Av~~l~~vl~desq--------~pmvRhEAaealga~~-~~---------~~~~~l~k~~~dp~~--------~v~E  118 (289)
T KOG0567|consen   65 DEDAVPVLVEVLLDESQ--------EPMVRHEAAEALGAIG-DP---------ESLEILTKYIKDPCK--------EVRE  118 (289)
T ss_pred             cchhhHHHHHHhccccc--------chHHHHHHHHHHHhhc-ch---------hhHHHHHHHhcCCcc--------ccch
Confidence            34688999999999887        6789999999999988 32         234555555544433        7777


Q ss_pred             HHHHHHHHhhhcChhhh----hhh--h------ccCCcHHHHHHhcCCC-H-HHHHHHHHHHHHhccCCchhhHHhHhcC
Q 005282          170 RAADAITNLAHENANIK----TRV--R------VEDGIPPLVELLKFVD-V-KVQRAAAGALRTLAFKNDENKKLIVECN  235 (704)
Q Consensus       170 ~a~~~L~~l~~~~~~~~----~~~--~------~~~~i~~L~~ll~~~~-~-~~~~~a~~~L~~l~~~~~~~~~~~~~~~  235 (704)
                      .|..++..+--.+.-.+    ...  +      ..+-+..+-..+.+.+ + --+..|...|+|+..           ..
T Consensus       119 Tc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~-----------Ee  187 (289)
T KOG0567|consen  119 TCELAIKRLEWKDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT-----------EE  187 (289)
T ss_pred             HHHHHHHHHHHhhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc-----------HH
Confidence            77777777642111000    000  0      1111233333333222 2 224455566666542           12


Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhc--CCChhHHHHHHHHHHHHhccCCcchH
Q 005282          236 ALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLS--SSCSESKREAALLLGQFAAADSNSKV  313 (704)
Q Consensus       236 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~~~~~~  313 (704)
                      .+..|.+-+..++.-.|..++.+++.+-.  +         -.++.|.+.|.  ..++-+|..|+.+|+.++.       
T Consensus       188 aI~al~~~l~~~SalfrhEvAfVfGQl~s--~---------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~-------  249 (289)
T KOG0567|consen  188 AINALIDGLADDSALFRHEVAFVFGQLQS--P---------AAIPSLIKVLLDETEHPMVRHEAAEALGAIAD-------  249 (289)
T ss_pred             HHHHHHHhcccchHHHHHHHHHHHhhccc--h---------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC-------
Confidence            36667777888888999999999998842  2         24777777775  3467789999999999864       


Q ss_pred             HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 005282          314 HIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLA  347 (704)
Q Consensus       314 ~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~  347 (704)
                          ...++.|...+.++++-+++.+..+|..+-
T Consensus       250 ----e~~~~vL~e~~~D~~~vv~esc~valdm~e  279 (289)
T KOG0567|consen  250 ----EDCVEVLKEYLGDEERVVRESCEVALDMLE  279 (289)
T ss_pred             ----HHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence                235788889999888888888888776654

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.46  E-value=0.00044  Score=54.98  Aligned_cols=86  Identities=31%  Similarity=0.456  Sum_probs=69.3

Q ss_pred             HHHHHHHh-cCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHH
Q 005282          279 LQPVIGLL-SSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIA  357 (704)
Q Consensus       279 l~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~  357 (704)
                      ++.|++.+ .++++.++..++.+|+++..           ..+++.|..+++++++.++..|+++|+.+.          
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------   59 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELGD-----------PEAIPALIELLKDEDPMVRRAAARALGRIG----------   59 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCTH-----------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcCC-----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence            57788888 88899999999999995421           245899999999999999999999999873          


Q ss_pred             hhCChHHHHHhhcCC-ChhHHHHHHHHHH
Q 005282          358 QDGGILPLLKLLDSK-NGSLQHNAAFALY  385 (704)
Q Consensus       358 ~~~~~~~L~~ll~~~-~~~v~~~a~~~L~  385 (704)
                      ....++.|.+++.++ +..++..|..+|+
T Consensus        60 ~~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   60 DPEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence            244778899988765 5567888988874

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=97.38  E-value=0.00059  Score=54.38  Aligned_cols=68  Identities=18%  Similarity=0.196  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHhhc-CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhc
Q 005282          118 VEKECAFALGLLA-VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRV  191 (704)
Q Consensus       118 v~~~a~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~  191 (704)
                      ++...+++|+|++ .++.+++.+.+.|++|.+++...-++.+      |-++++|.+++.+++.++++++..+..
T Consensus         2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~n------P~irEwai~aiRnL~e~n~eNQ~~I~~   70 (102)
T PF09759_consen    2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHN------PFIREWAIFAIRNLCEGNPENQEFIAQ   70 (102)
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCccc------HHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence            4667899999999 9999999999999999999987665553      489999999999999999999886554

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=97.34  E-value=0.015  Score=61.19  Aligned_cols=358  Identities=20%  Similarity=0.160  Sum_probs=191.9

Q ss_pred             hHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHH
Q 005282           94 VPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAAD  173 (704)
Q Consensus        94 i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~  173 (704)
                      +|.++..|.+....       ...-......+|+.+|.++..-+.+.     +.++..+........   ..+.....+.
T Consensus         1 ~p~ll~~Lpd~~~~-------~~~~~~~~L~~l~~ls~~~~i~~~~~-----~~ll~kl~~~~~~~~---~~~~~~~il~   65 (415)
T PF12460_consen    1 LPALLALLPDSDSS-------TDSNYERILEALAALSTSPQILETLS-----IRLLNKLSIVCQSES---SSDYCHAILS   65 (415)
T ss_pred             CchHHhhCCCCCCc-------chhHHHHHHHHHHHHHCChhHHHHHH-----HHHHHHHHHHhcCCC---ChHHHHHHHH
Confidence            46777788777651       11567889999999997777655544     244444433221111   1266667777


Q ss_pred             HHHHhhhcChhhh-----hhhhccCCcHHHHHHhcC-----C--CHHHHHHHHHHHHHhccCCchh-hHHhHhcCChHHH
Q 005282          174 AITNLAHENANIK-----TRVRVEDGIPPLVELLKF-----V--DVKVQRAAAGALRTLAFKNDEN-KKLIVECNALPTL  240 (704)
Q Consensus       174 ~L~~l~~~~~~~~-----~~~~~~~~i~~L~~ll~~-----~--~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~~i~~L  240 (704)
                      ++.++........     ....+...++.++...-.     .  ++.+...+...+..+...-+.. ++.+.     ..+
T Consensus        66 tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~~-----~~~  140 (415)
T PF12460_consen   66 TLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEIL-----DEL  140 (415)
T ss_pred             HHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHHH-----HHH
Confidence            7777764332222     233344467777766642     1  2566666666666665533333 33332     223


Q ss_pred             HHhhc----------CC------CHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcC-CChhHHHHHHHHHHH
Q 005282          241 VLMLR----------SE------DASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSS-SCSESKREAALLLGQ  303 (704)
Q Consensus       241 ~~lL~----------~~------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~~~~~a~~~L~~  303 (704)
                      ..+..          ..      ......-...+++.+-   ++..-. -....+..++.+..+ .++..+..++..++-
T Consensus       141 ~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~---~~~~~~-~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~  216 (415)
T PF12460_consen  141 YSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLR---KDVSLP-DLEELLQSLLNLALSSEDEFSRLAALQLLAS  216 (415)
T ss_pred             HHHHccccccCCCCccccccccccccHHHHHHHHHHcCC---cccCcc-CHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence            33222          01      1112222223333332   221110 112256677766644 446667788888887


Q ss_pred             HhccCCcchHHHHhcCChHHHHHhh-CCCCHHHHH----HHHHHHHHhh-cCCchhhhHHhhCChHHHHHhhcCCChhHH
Q 005282          304 FAAADSNSKVHIVQRGAVRPLIEML-QSPDSQLKE----MSAFALGRLA-QDTHNQAGIAQDGGILPLLKLLDSKNGSLQ  377 (704)
Q Consensus       304 l~~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~----~a~~~L~~l~-~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~  377 (704)
                      ++...+...  .. .+++..+.... ...+...+.    ...|...-+. ++.+...     ..+..|++++.+  +++.
T Consensus       217 LvNK~~~~~--~l-~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~-----~~~~~L~~lL~~--~~~g  286 (415)
T PF12460_consen  217 LVNKWPDDD--DL-DEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLAT-----ELLDKLLELLSS--PELG  286 (415)
T ss_pred             HHcCCCChh--hH-HHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHH-----HHHHHHHHHhCC--hhhH
Confidence            764322211  00 12334444333 222333333    3334443333 3332222     234567777775  7778


Q ss_pred             HHHHHHHHHcccC-CchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHHHHH
Q 005282          378 HNAAFALYGLADN-EDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTL  456 (704)
Q Consensus       378 ~~a~~~L~~l~~~-~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~  456 (704)
                      ..++.++.-+..+ ++.... .....+..|-+    .                ++-..++|.|+...+..+.+.+.+...
T Consensus       287 ~~aA~~f~il~~d~~~~l~~-~~~a~vklLyk----Q----------------R~F~~~~p~L~~~~~~~~~~~k~~yL~  345 (415)
T PF12460_consen  287 QQAAKAFGILLSDSDDVLNK-ENHANVKLLYK----Q----------------RFFTQVLPKLLEGFKEADDEIKSNYLT  345 (415)
T ss_pred             HHHHHHHhhHhcCcHHhcCc-cccchhhhHHh----H----------------HHHHHHHHHHHHHHhhcChhhHHHHHH
Confidence            8888888888776 332221 11111111110    0                111235677778777777778899999


Q ss_pred             HHHhccCCCccceeeec-CCcHHHHHHHHhhcchhhhhhHHHHHHHHhhhc
Q 005282          457 ALAHLCAPDDCKTIFID-NNGLELLLGLLESTSVKQREESSVALYKLATKA  506 (704)
Q Consensus       457 ~L~~l~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~  506 (704)
                      +|.++..+-+......+ ...+|.|++-+..++++++..+..+|..+..+.
T Consensus       346 ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~  396 (415)
T PF12460_consen  346 ALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA  396 (415)
T ss_pred             HHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence            99999654443322222 256888888888899999999999999988866

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=97.34  E-value=0.04  Score=61.42  Aligned_cols=256  Identities=20%  Similarity=0.206  Sum_probs=154.0

Q ss_pred             CChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CCh-hhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHH
Q 005282           92 GAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKP-EHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIR  169 (704)
Q Consensus        92 g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~-~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~  169 (704)
                      +++..|++.|.+.+.          .|+..|+..++.++ ..| +..+.     ++..++.++.-.++       +..-.
T Consensus       341 ~vie~Lls~l~d~dt----------~VrWSaAKg~grvt~rlp~~Lad~-----vi~svid~~~p~e~-------~~aWH  398 (1133)
T KOG1943|consen  341 FVIEHLLSALSDTDT----------VVRWSAAKGLGRVTSRLPPELADQ-----VIGSVIDLFNPAED-------DSAWH  398 (1133)
T ss_pred             HHHHHHHHhccCCcc----------hhhHHHHHHHHHHHccCcHHHHHH-----HHHHHHHhcCcCCc-------hhHHH
Confidence            568889999999876          89999999999999 555 22222     44556664443332       15566


Q ss_pred             HHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhc--------CCCHHHHHHHHHHHHHhccCCchhh-HHhHhcCChHHH
Q 005282          170 RAADAITNLAHENANIKTRVRVEDGIPPLVELLK--------FVDVKVQRAAAGALRTLAFKNDENK-KLIVECNALPTL  240 (704)
Q Consensus       170 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~--------~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~~~i~~L  240 (704)
                      .++.+|+.++...--...  .-..++|.++.-+.        +....+|.+|+.++|.++......- +.+...=.-..|
T Consensus       399 gacLaLAELA~rGlLlps--~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL  476 (1133)
T KOG1943|consen  399 GACLALAELALRGLLLPS--LLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALL  476 (1133)
T ss_pred             HHHHHHHHHHhcCCcchH--HHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHH
Confidence            889999999852211110  11245666666554        2346799999999999987433321 112211112233


Q ss_pred             HHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCC---hhHHHHHHHHHHHHhccCCcchHHHHh
Q 005282          241 VLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSC---SESKREAALLLGQFAAADSNSKVHIVQ  317 (704)
Q Consensus       241 ~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~---~~~~~~a~~~L~~l~~~~~~~~~~~~~  317 (704)
                      ...+.+.+...|+.|..++-...-.          .|-.|.=+.++..-+   -..+.++-..+..-....+..+..+  
T Consensus       477 ~~AlFDrevncRRAAsAAlqE~VGR----------~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~--  544 (1133)
T KOG1943|consen  477 IVALFDREVNCRRAASAALQENVGR----------QGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPV--  544 (1133)
T ss_pred             HHHhcCchhhHhHHHHHHHHHHhcc----------CCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHH--
Confidence            4455678888999988888665422          111211112222211   1123444444443333333333322  


Q ss_pred             cCChHHHHHh-hCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHccc
Q 005282          318 RGAVRPLIEM-LQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLAD  389 (704)
Q Consensus       318 ~~~i~~L~~l-l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~  389 (704)
                         ++.|+.. +.+-+..+++.++++|.+|+....   +....+.++++++...+++...+.-+..+.+.+..
T Consensus       545 ---f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~p---k~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~  611 (1133)
T KOG1943|consen  545 ---FNHLLTKKVCHWDVKIRELAAYALHKLSLTEP---KYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIG  611 (1133)
T ss_pred             ---HHHHHhcccccccHHHHHHHHHHHHHHHHhhH---HhhcccchhhhhhhhcCCChHHhhhhHHHHHHHHH
Confidence               3444443 566799999999999999886532   34455678889998888888888777777666653

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=97.29  E-value=0.0084  Score=67.10  Aligned_cols=242  Identities=19%  Similarity=0.069  Sum_probs=149.7

Q ss_pred             HHHHHHHHHHHhhc--CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhh---hcChhhhhhhhc
Q 005282          117 EVEKECAFALGLLA--VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLA---HENANIKTRVRV  191 (704)
Q Consensus       117 ~v~~~a~~~L~~l~--~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~---~~~~~~~~~~~~  191 (704)
                      +.+..|+..|..++  -+.+.+-    .-++|.++.++.++..        +++..|+.+|..+.   .+-+..-..+..
T Consensus       438 ~tK~~ALeLl~~lS~~i~de~~L----DRVlPY~v~l~~Ds~a--------~Vra~Al~Tlt~~L~~Vr~~~~~daniF~  505 (1431)
T KOG1240|consen  438 QTKLAALELLQELSTYIDDEVKL----DRVLPYFVHLLMDSEA--------DVRATALETLTELLALVRDIPPSDANIFP  505 (1431)
T ss_pred             hhHHHHHHHHHHHhhhcchHHHH----hhhHHHHHHHhcCchH--------HHHHHHHHHHHHHHhhccCCCcccchhhH
Confidence            78889999999999  3333321    2357999999998876        89999999888875   233334445666


Q ss_pred             cCCcHHHHHHhcC-CCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhH
Q 005282          192 EDGIPPLVELLKF-VDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIK  270 (704)
Q Consensus       192 ~~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~  270 (704)
                      .-.+|.|-.++.+ ....+|..-+.+|..|+.  ...+  +.+.+.-.....++++++.+       ...+.  ......
T Consensus       506 eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~--tA~r--Fle~~q~~~~~g~~n~~nse-------t~~~~--~~~~~~  572 (1431)
T KOG1240|consen  506 EYLFPHLNHLLNDSSAQIVRIAYASNLAQLAK--TAYR--FLELTQELRQAGMLNDPNSE-------TAPEQ--NYNTEL  572 (1431)
T ss_pred             hhhhhhhHhhhccCccceehhhHHhhHHHHHH--HHHH--HHHHHHHHHhcccccCcccc-------ccccc--ccchHH
Confidence            6778888888887 556777777788888874  1111  11111111111223333332       00000  001111


Q ss_pred             HHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC
Q 005282          271 KEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDT  350 (704)
Q Consensus       271 ~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  350 (704)
                      +++ ..++-+....++.++++-+++.-+..|.-+|..-...+   .+.=++..|+.+|.+.|..+|..-...|.-++..-
T Consensus       573 ~~L-~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~k---sND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~V  648 (1431)
T KOG1240|consen  573 QAL-HHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEK---SNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFV  648 (1431)
T ss_pred             HHH-HHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcc---cccchHHHHHHHhcCccHHHHHHHHhhccceEEEE
Confidence            111 22344556677777777777777777777763211000   01126899999999999999887777776555322


Q ss_pred             chhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHccc
Q 005282          351 HNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLAD  389 (704)
Q Consensus       351 ~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~  389 (704)
                      .-  .-+++..+|.|.+-|.++.+-|...|+++|.-|+.
T Consensus       649 G~--rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik  685 (1431)
T KOG1240|consen  649 GW--RSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIK  685 (1431)
T ss_pred             ee--eeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHH
Confidence            11  12445566777888899999999999999988864

>smart00512 Skp1 Found in Skp1 protein family

Probab=97.23  E-value=0.0019  Score=52.92  Aligned_cols=80  Identities=16%  Similarity=0.293  Sum_probs=57.7

Q ss_pred             EEEEE-cCeEeehhHHHHhhcCHHHHHhhcCCCCCC-CCCceEcCCCCHHHHHHHHHHHhcCccc---------------
Q 005282          538 VTFVV-EGKQFYAHRICLLASSDAFRAMFDGGYKEK-NAKDVEIPNIRWNVFELMMRFIYTGNVD---------------  600 (704)
Q Consensus       538 ~~~~~-~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~-~~~~i~l~~~~~~~~~~~l~~~Y~~~~~---------------  600 (704)
                      +.++. +|..|.+.+.... .|..++.|+.+...+. ....|++++++...++.+++|++...-.               
T Consensus         4 v~L~S~Dg~~f~v~~~~a~-~S~~i~~~l~~~~~~~~~~~~Ipl~~v~~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~wD~   82 (104)
T smart00512        4 IKLISSDGEVFEVEREVAR-QSKTIKAMIEDLGVDDENNNPIPLPNVTSKILSKVIEYCEHHVDDPPSVADKDDIPTWDA   82 (104)
T ss_pred             EEEEeCCCCEEEecHHHHH-HHHHHHHHHHccCcccCCCCCccCCCcCHHHHHHHHHHHHHcccCCCCccccccccHHHH
Confidence            44544 7889999999875 8999999998643222 2258999999999999999999653211               


Q ss_pred             ----cChhhHHHHHHHHhhhCh
Q 005282          601 ----VSVDIAQDLLRAADQYLL  618 (704)
Q Consensus       601 ----~~~~~~~~ll~~A~~~~~  618 (704)
                          ++.+.+.+|+.+|+++++
T Consensus        83 ~F~~~d~~~l~dLl~AAnyL~I  104 (104)
T smart00512       83 EFLKIDQETLFELILAANYLDI  104 (104)
T ss_pred             HHHcCCHHHHHHHHHHHHhhCC
Confidence                233456677777776653

Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=97.22  E-value=0.036  Score=51.78  Aligned_cols=180  Identities=23%  Similarity=0.246  Sum_probs=113.9

Q ss_pred             HHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhc--CCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhh
Q 005282          167 VIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLK--FVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLML  244 (704)
Q Consensus       167 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL  244 (704)
                      +....+.+|+....           ...++.|+..+.  +..|-+|..|..+|..+..           .+.++.+-++.
T Consensus        52 lkhe~ay~LgQ~~~-----------~~Av~~l~~vl~desq~pmvRhEAaealga~~~-----------~~~~~~l~k~~  109 (289)
T KOG0567|consen   52 LKHELAYVLGQMQD-----------EDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD-----------PESLEILTKYI  109 (289)
T ss_pred             hccchhhhhhhhcc-----------chhhHHHHHHhcccccchHHHHHHHHHHHhhcc-----------hhhHHHHHHHh
Confidence            34455666666553           345788888887  4567888899999988873           23466677777


Q ss_pred             cCCCHHHHHHHHHHHHHHhcCChhhH----HHH--------HHcCCHHHHHHHhcCCChhH--HHHHHHHHHHHhccCCc
Q 005282          245 RSEDASVHFEAVGVIGNLVHSSPSIK----KEV--------ILAGALQPVIGLLSSSCSES--KREAALLLGQFAAADSN  310 (704)
Q Consensus       245 ~~~~~~v~~~a~~~L~~l~~~~~~~~----~~~--------~~~~~l~~L~~ll~~~~~~~--~~~a~~~L~~l~~~~~~  310 (704)
                      +++...|++.+..++..+-..+....    ...        ...+-+..+-..|.+.+...  +..+...|.|+-.    
T Consensus       110 ~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~----  185 (289)
T KOG0567|consen  110 KDPCKEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT----  185 (289)
T ss_pred             cCCccccchHHHHHHHHHHHhhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc----
Confidence            67777788877777776643211100    000        01122334443333332222  4455556666521    


Q ss_pred             chHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcC--CChhHHHHHHHHHHHcc
Q 005282          311 SKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDS--KNGSLQHNAAFALYGLA  388 (704)
Q Consensus       311 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~--~~~~v~~~a~~~L~~l~  388 (704)
                             ...+..|+.-+..++.-.|..++.+++.|-...          .++.|.+.|.+  .++.||..|+.+|+.++
T Consensus       186 -------EeaI~al~~~l~~~SalfrhEvAfVfGQl~s~~----------ai~~L~k~L~d~~E~pMVRhEaAeALGaIa  248 (289)
T KOG0567|consen  186 -------EEAINALIDGLADDSALFRHEVAFVFGQLQSPA----------AIPSLIKVLLDETEHPMVRHEAAEALGAIA  248 (289)
T ss_pred             -------HHHHHHHHHhcccchHHHHHHHHHHHhhccchh----------hhHHHHHHHHhhhcchHHHHHHHHHHHhhc
Confidence                   124677777788888888999999998876543          56777777744  57899999999999986


Q ss_pred             c
Q 005282          389 D  389 (704)
Q Consensus       389 ~  389 (704)
                      .
T Consensus       249 ~  249 (289)
T KOG0567|consen  249 D  249 (289)
T ss_pred             C
Confidence            4

>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.21  E-value=0.00014  Score=73.24  Aligned_cols=131  Identities=22%  Similarity=0.198  Sum_probs=111.9

Q ss_pred             CeEeehhHHHHhhcCHHHHHhhcCCCCCCCCCceEcCCCCHHHHHHHHHHHhcCccccChhhHH---HHHHHHhhhChHh
Q 005282          544 GKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFIYTGNVDVSVDIAQ---DLLRAADQYLLEG  620 (704)
Q Consensus       544 ~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~~~---~ll~~A~~~~~~~  620 (704)
                      ++.+.+|+.++++++++|+.|+..+..+.....+.+.+.+++.++.+..|.|...-.-..+...   .++..+.+++...
T Consensus       109 ~g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~d~~~~~~~~~~~F~~~~s~~~~~~~~~~~~~~~a~~f~~~~~~  188 (297)
T KOG1987|consen  109 NGFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITLLEEKPEVLEALNGFQVLPSQVSSVERIFEKHPDLAAAFKYKNRH  188 (297)
T ss_pred             CcEEEcCceEEEeeecceeeecccccchhccccccccccchhhHhhhceEEEeccchHHHHHhhcCChhhhhccccccHH
Confidence            5669999999999999999999987766666677888999999999999999976655555554   7888999999999


Q ss_pred             HHHHHHHHHHhhCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH--HHHHhhCChhh
Q 005282          621 LKRLCEYSIAQIISVENIMLMYELSEAYNATTLKQSCILFILE--KFDKMRNKPWF  674 (704)
Q Consensus       621 l~~~c~~~l~~~~~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~--~~~~~~~~~~f  674 (704)
                      ++..|...+...+...++...+..+..++...+...+..++..  +++.+....++
T Consensus       189 lk~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ld~l~~~~~~  244 (297)
T KOG1987|consen  189 LKLACMPVLLSLIETLNVSQSLQEASNYDLKEAKSALTYVIAAGFKLDWLEKKLNE  244 (297)
T ss_pred             HHHHHHHHHHHHHHhhhhcccHHHhchhHHHHHHHHHHHHHhccchHhHHHHHHHH
Confidence            9999999999989888888899999999999999999999987  77777654444

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=97.20  E-value=0.00064  Score=48.26  Aligned_cols=55  Identities=29%  Similarity=0.372  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHc
Q 005282          333 SQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGL  387 (704)
Q Consensus       333 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l  387 (704)
                      +.+|..|+++|++++........-.....++.|+.+|.++++.||..|+++|++|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            4689999999999988877766667778889999999999999999999999875

...

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=97.08  E-value=0.61  Score=51.54  Aligned_cols=161  Identities=12%  Similarity=0.065  Sum_probs=117.6

Q ss_pred             HHHHHHH-HHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCc
Q 005282          117 EVEKECA-FALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGI  195 (704)
Q Consensus       117 ~v~~~a~-~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i  195 (704)
                      ..+..|+ .++..+..+.+..      ...+-+++.+.+.+.        ++++-+-..|-+.+...|+..-     -.+
T Consensus        34 ~~kidAmK~iIa~M~~G~dms------sLf~dViK~~~trd~--------ElKrL~ylYl~~yak~~P~~~l-----Lav   94 (757)
T COG5096          34 YKKIDAMKKIIAQMSLGEDMS------SLFPDVIKNVATRDV--------ELKRLLYLYLERYAKLKPELAL-----LAV   94 (757)
T ss_pred             HHHHHHHHHHHHHHhcCCChH------HHHHHHHHHHHhcCH--------HHHHHHHHHHHHHhccCHHHHH-----HHH
Confidence            4455555 4667777444422      224555565553333        8888888888888876663211     235


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHH
Q 005282          196 PPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVIL  275 (704)
Q Consensus       196 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~  275 (704)
                      ..+.+=++++|+.+|..|++++..+-.  ++...     .+++.+.+++.++++.||+.|+-++.++-+-++.   ...+
T Consensus        95 Nti~kDl~d~N~~iR~~AlR~ls~l~~--~el~~-----~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~---l~~~  164 (757)
T COG5096          95 NTIQKDLQDPNEEIRGFALRTLSLLRV--KELLG-----NIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKD---LYHE  164 (757)
T ss_pred             HHHHhhccCCCHHHHHHHHHHHHhcCh--HHHHH-----HHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHh---hhhc
Confidence            677778889999999999999988853  22222     2478899999999999999999999999866543   4456


Q ss_pred             cCCHHHHHHHhcCCChhHHHHHHHHHHHHhc
Q 005282          276 AGALQPVIGLLSSSCSESKREAALLLGQFAA  306 (704)
Q Consensus       276 ~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~  306 (704)
                      .|.+..+..++.+.++.+..+|..+|..+..
T Consensus       165 ~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~  195 (757)
T COG5096         165 LGLIDILKELVADSDPIVIANALASLAEIDP  195 (757)
T ss_pred             ccHHHHHHHHhhCCCchHHHHHHHHHHHhch
Confidence            7889999999999999999999999998853

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=97.07  E-value=0.11  Score=53.40  Aligned_cols=168  Identities=10%  Similarity=0.098  Sum_probs=117.2

Q ss_pred             HHHHHHHhhc-CChhhHHHHHHcCCcHHHHHHHhhcc----C-------CCCC-------cc--------hhHHHHHHHH
Q 005282          121 ECAFALGLLA-VKPEHQQIIVDTGALPHLVSLLKQYK----N-------GGNS-------RA--------LSGVIRRAAD  173 (704)
Q Consensus       121 ~a~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~----~-------~~~~-------~~--------~~~~~~~a~~  173 (704)
                      .|+.+|-.+. ..+..-..+.+.+|+..+++.+...-    .       ....       ..        ...++...+.
T Consensus         3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~r~~llK~lLk   82 (379)
T PF06025_consen    3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEENKNEEAGSGIPPEYKESSVDGYSISYQRQQLLKSLLK   82 (379)
T ss_pred             HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcccccCCCCCCCCCcccccccccccCHHHHHHHHHHHH
Confidence            4677777777 66677778889999999988875421    0       0000       00        0144455555


Q ss_pred             HHHHhhh---cChhhhhhhhc-cCCcHHHHHHhcCC---CHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhc-
Q 005282          174 AITNLAH---ENANIKTRVRV-EDGIPPLVELLKFV---DVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLR-  245 (704)
Q Consensus       174 ~L~~l~~---~~~~~~~~~~~-~~~i~~L~~ll~~~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~-  245 (704)
                      ++..+..   .....-.-+.+ ...+..|..++++.   .+.+...|+..+..+..+.|..-..+.+.|.++.+++.+. 
T Consensus        83 ~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~  162 (379)
T PF06025_consen   83 FLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITA  162 (379)
T ss_pred             HHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhc
Confidence            5655554   11111122344 34455666667654   4788899999999999888888999999999999999887 


Q ss_pred             C---CCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCC
Q 005282          246 S---EDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSS  289 (704)
Q Consensus       246 ~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~  289 (704)
                      .   ++.++....-.+|+-||-+ ....+.+.+.+.++.+++++.++
T Consensus       163 ~~i~~s~e~l~~lP~~l~AicLN-~~Gl~~~~~~~~l~~~f~if~s~  208 (379)
T PF06025_consen  163 KGILPSSEVLTSLPNVLSAICLN-NRGLEKVKSSNPLDKLFEIFTSP  208 (379)
T ss_pred             cCCCCcHHHHHHHHHHHhHHhcC-HHHHHHHHhcChHHHHHHHhCCH
Confidence            3   4678888888899999876 56667788889999999988764

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=97.06  E-value=0.045  Score=50.46  Aligned_cols=181  Identities=14%  Similarity=0.151  Sum_probs=123.9

Q ss_pred             HHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc--CChhhHHHHHHcCCc
Q 005282           68 AKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA--VKPEHQQIIVDTGAL  145 (704)
Q Consensus        68 ~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~--~~~~~~~~~~~~g~l  145 (704)
                      ...++..|.-++++|+.+..+.++.+--.+-.+|.....    ..+| +..|..+..+++.+.  ++.+....+...+++
T Consensus        96 VcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~----~r~f-EyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIV  170 (293)
T KOG3036|consen   96 VCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSK----SRPF-EYLRLTSLGVIGALVKNDDQEVIRFLLTTEIV  170 (293)
T ss_pred             HHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhcccc----CCch-HHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhH
Confidence            466677777778899999999999988888888877654    3333 379999999999999  666777888899999


Q ss_pred             HHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhh------hhhc-cCCcH-HHHHHhcCCCHHHHHHHHHHH
Q 005282          146 PHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKT------RVRV-EDGIP-PLVELLKFVDVKVQRAAAGAL  217 (704)
Q Consensus       146 ~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~------~~~~-~~~i~-~L~~ll~~~~~~~~~~a~~~L  217 (704)
                      |..++.+...+.        ..+..|..++..+..++....-      .+.. ...+. .+.++.+.+++.+.++++++.
T Consensus       171 PlCLrime~GSe--------lSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcY  242 (293)
T KOG3036|consen  171 PLCLRIMESGSE--------LSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCY  242 (293)
T ss_pred             HHHHHHHhcccH--------HHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence            999999998875        6677788888877654433211      1111 11222 334555678999999999999


Q ss_pred             HHhccCCchhhHHhHhc--CCh-H-HHHHhhcCCCHHHHHHHHHHHHHHh
Q 005282          218 RTLAFKNDENKKLIVEC--NAL-P-TLVLMLRSEDASVHFEAVGVIGNLV  263 (704)
Q Consensus       218 ~~l~~~~~~~~~~~~~~--~~i-~-~L~~lL~~~~~~v~~~a~~~L~~l~  263 (704)
                      ..|+. ++..+..+...  +.+ . .+..++ .+|+..+.+-...+.|++
T Consensus       243 lrLsd-nprar~aL~~clPd~Lrd~tfs~~l-~~D~~~k~~l~~ll~~l~  290 (293)
T KOG3036|consen  243 LRLSD-NPRARAALRSCLPDQLRDGTFSLLL-KDDPETKQWLQQLLKNLC  290 (293)
T ss_pred             HHhcC-CHHHHHHHHhhCcchhccchHHHHH-hcChhHHHHHHHHHHHhc
Confidence            99995 77776665432  110 0 111122 345555666555555554

>smart00875 BACK BTB And C-terminal Kelch

Probab=97.03  E-value=0.001  Score=54.45  Aligned_cols=50  Identities=20%  Similarity=0.282  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCChhhhccchhcHHHHHH
Q 005282          638 IMLMYELSEAYNATTLKQSCILFILEKFDKMRNKPWFFRLIRCVLPEIRN  687 (704)
Q Consensus       638 ~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~L~~~~~~~l~~  687 (704)
                      |+.++.+|..|+++.|.+.|..|+.+||..+.++++|..||.+.+.++++
T Consensus         1 c~~i~~~a~~~~~~~L~~~~~~~i~~nf~~~~~~~~f~~L~~~~l~~iL~   50 (101)
T smart00875        1 CLGIRRFAELYGLEELLEKALRFILKNFLEVAQSEEFLELSLEQLLSLLS   50 (101)
T ss_pred             CHhHHHHHHHhChHHHHHHHHHHHHHHHHHHhcCcHHhcCCHHHHHHHhC
Confidence            56788999999999999999999999999999999999999886666554

The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=97.02  E-value=0.001  Score=47.21  Aligned_cols=55  Identities=38%  Similarity=0.370  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHH
Q 005282          207 VKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNL  262 (704)
Q Consensus       207 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l  262 (704)
                      |.+|..|+++|++++...+..... ....+++.|+.+|.++++.||..|+++|++|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            578999999999998644444333 4556899999999999999999999999875

...

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.00  E-value=0.0017  Score=42.62  Aligned_cols=39  Identities=44%  Similarity=0.602  Sum_probs=35.8

Q ss_pred             chhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 005282          225 DENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLV  263 (704)
Q Consensus       225 ~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~  263 (704)
                      ++++..+.+.|+++.|++++.++++.++..++++|.|++
T Consensus         2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~   40 (41)
T smart00185        2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS   40 (41)
T ss_pred             cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence            347778889999999999999999999999999999996

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=96.99  E-value=0.042  Score=55.56  Aligned_cols=268  Identities=18%  Similarity=0.186  Sum_probs=134.7

Q ss_pred             hcCCCHHHHHHHHHHHHHhcc-----CCchhhHHhHhcCChHHHHH------hh-cCCCHHHHHHHHHHHHHHhcCChhh
Q 005282          202 LKFVDVKVQRAAAGALRTLAF-----KNDENKKLIVECNALPTLVL------ML-RSEDASVHFEAVGVIGNLVHSSPSI  269 (704)
Q Consensus       202 l~~~~~~~~~~a~~~L~~l~~-----~~~~~~~~~~~~~~i~~L~~------lL-~~~~~~v~~~a~~~L~~l~~~~~~~  269 (704)
                      +...++.++.++..++..+..     ..|+..+.-...+.+..++-      .. .+..+..+...|.++.++.......
T Consensus       304 ~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~  383 (728)
T KOG4535|consen  304 MGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSN  383 (728)
T ss_pred             CCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcC
Confidence            336788999999998888754     22222222222222221111      00 0122345667777777776331110


Q ss_pred             HHHHHHcCCHHHHHHHhc----CCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHH
Q 005282          270 KKEVILAGALQPVIGLLS----SSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGR  345 (704)
Q Consensus       270 ~~~~~~~~~l~~L~~ll~----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~  345 (704)
                      .    ..|--.....++.    +.+.-++..|.+++.-+.-+.........-......+...+.+.....|..++|+++|
T Consensus       384 l----pn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~Kaawtlgn  459 (728)
T KOG4535|consen  384 L----PNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGN  459 (728)
T ss_pred             C----CCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhh
Confidence            0    0111111222222    1222245566666655554332222223334456666667777778899999999999


Q ss_pred             hhc----CCch-hhhHHhh-C-ChHHHHHhh---cCCChhHHHHHHHHHHHcccCCchhhHHHhhCCccccccccccccc
Q 005282          346 LAQ----DTHN-QAGIAQD-G-GILPLLKLL---DSKNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQP  415 (704)
Q Consensus       346 l~~----~~~~-~~~~~~~-~-~~~~L~~ll---~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~  415 (704)
                      ++.    +.++ +..--.. | .+..+++.-   ...+..|+.++..+|.|+.+       +++     ++.+       
T Consensus       460 ITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQ-------vlq-----~i~~-------  520 (728)
T KOG4535|consen  460 ITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQ-------FLQ-----PIEK-------  520 (728)
T ss_pred             hHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHH-------HHH-----Hhhh-------
Confidence            983    2222 1111111 1 122222222   22456799999999999853       111     0000       


Q ss_pred             chHHHHHHHHHHHHHhhcchhHHHHH-HHhhccHHHHHHHHHHHHhccCCCccc--eeeecCCcHHHHHHHHhh-cchhh
Q 005282          416 TKDCVARTLKRLEEKVHGRVLNHLLY-LLRVADRAVKRRVTLALAHLCAPDDCK--TIFIDNNGLELLLGLLES-TSVKQ  491 (704)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~L~~-ll~~~~~~v~~~a~~~L~~l~~~~~~~--~~l~~~~~i~~L~~ll~~-~~~~~  491 (704)
                         |.-..+      +.+. +..++. ........|+=++|.+++||-.++..+  ..-......+.|..++.+ .|-.+
T Consensus       521 ---~~~~e~------~~~~-~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKV  590 (728)
T KOG4535|consen  521 ---PTFAEI------IEES-IQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKV  590 (728)
T ss_pred             ---ccHHHH------HHHH-HHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceE
Confidence               000000      0000 001111 112345678889999999996665432  221223456778888765 88899


Q ss_pred             hhhHHHHHHHH
Q 005282          492 REESSVALYKL  502 (704)
Q Consensus       492 ~~~a~~~L~~L  502 (704)
                      |..|+.+|..-
T Consensus       591 Ri~AA~aL~vp  601 (728)
T KOG4535|consen  591 RIRAAAALSVP  601 (728)
T ss_pred             eehhhhhhcCC
Confidence            99999888653

>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]

Probab=96.97  E-value=0.0094  Score=52.23  Aligned_cols=90  Identities=19%  Similarity=0.245  Sum_probs=69.6

Q ss_pred             cCeEeehhHHHHhhcCHHHHHhhcCCCCCCCCCceEcCCCCHHHHHHHHHHHhcCccc----------------------
Q 005282          543 EGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFIYTGNVD----------------------  600 (704)
Q Consensus       543 ~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~----------------------  600 (704)
                      +|+.|.+-..+.. .|..++.++...--..+...|+++.++...|..+++|+|..+-.                      
T Consensus        13 DG~~f~ve~~~a~-~s~~i~~~~~~~~~~~~~~~IPl~nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~WD~~   91 (162)
T KOG1724|consen   13 DGEIFEVEEEVAR-QSQTISAHMIEDGCADENDPIPLPNVTSKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEWDAE   91 (162)
T ss_pred             CCceeehhHHHHH-HhHHHHHHHHHcCCCccCCccccCccCHHHHHHHHHHHHHcccccccccccccccccCCccHHHHH
Confidence            7889999887766 78888888864322222258999999999999999999884321                      


Q ss_pred             ---cChhhHHHHHHHHhhhChHhHHHHHHHHHHhhC
Q 005282          601 ---VSVDIAQDLLRAADQYLLEGLKRLCEYSIAQII  633 (704)
Q Consensus       601 ---~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~  633 (704)
                         ++..++++++.+|+|+.+++|.+.|.+.+...+
T Consensus        92 Flk~d~~tLfdli~AAnyLdi~gLl~~~ck~va~mi  127 (162)
T KOG1724|consen   92 FLKVDQGTLFDLILAANYLDIKGLLDLTCKTVANMI  127 (162)
T ss_pred             HHhcCHHHHHHHHHHhhhcccHHHHHHHHHHHHHHH
Confidence               233578999999999999999999988776555

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=96.95  E-value=0.081  Score=53.12  Aligned_cols=201  Identities=14%  Similarity=0.159  Sum_probs=143.0

Q ss_pred             HHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhH-----HHHHHcCCcHHHHHHHhhccCCC
Q 005282           86 SLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQ-----QIIVDTGALPHLVSLLKQYKNGG  159 (704)
Q Consensus        86 ~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~-----~~~~~~g~l~~L~~lL~~~~~~~  159 (704)
                      ..+...|.+..|+..|..-+-          +.+..++.+.+++. ...+.+     +.+. ...-..+..++.....  
T Consensus        70 ~Ei~~~dll~~Li~~L~~L~f----------EsrKdv~~if~~llr~~~~~~~~p~v~yl~-~~~peil~~L~~gy~~--  136 (335)
T PF08569_consen   70 QEIYRSDLLYLLIRNLPKLDF----------ESRKDVAQIFSNLLRRQIGSRSPPTVDYLE-RHRPEILDILLRGYEN--  136 (335)
T ss_dssp             HHHHHHTHHHHHHHTGGGS-H----------HHHHHHHHHHHHHHT--BTTB--HHHHHHH-T--THHHHHHHHGGGS--
T ss_pred             HHHHHhCHHHHHHHHhhhCCC----------cccccHHHHHHHHHhhccCCCCCchHHHHH-hCCHHHHHHHHHHhcC--
Confidence            556677889999999988754          89999999999998 433332     2222 2222333333444332  


Q ss_pred             CCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcC---C
Q 005282          160 NSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECN---A  236 (704)
Q Consensus       160 ~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~---~  236 (704)
                           +++...+...|...+. .+.....+.....+..+.+..+.++=++..-|..++..+-..++.....+...+   +
T Consensus       137 -----~dial~~g~mlRec~k-~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~f  210 (335)
T PF08569_consen  137 -----PDIALNCGDMLRECIK-HESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRF  210 (335)
T ss_dssp             -----TTTHHHHHHHHHHHTT-SHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHH
T ss_pred             -----ccccchHHHHHHHHHh-hHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence                 2666677777777775 566667788888899999999999999999999999997665565555555443   4


Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHH----HHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhc
Q 005282          237 LPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKK----EVILAGALQPVIGLLSSSCSESKREAALLLGQFAA  306 (704)
Q Consensus       237 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~----~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~  306 (704)
                      +.....+|.+++--+++.++..|+.+..+. .+..    .+.+..-+..++.+|++.+..++.+|..++--...
T Consensus       211 f~~~~~Ll~s~NYvtkrqslkLL~ellldr-~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVA  283 (335)
T PF08569_consen  211 FQKYNKLLESSNYVTKRQSLKLLGELLLDR-SNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVA  283 (335)
T ss_dssp             HHHHHHHCT-SSHHHHHHHHHHHHHHHHSG-GGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHccCCCeEeehhhHHHHHHHHHch-hHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHh
Confidence            667788999999999999999999998663 3333    22345678899999999999999999988887765

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.94  E-value=0.005  Score=66.22  Aligned_cols=225  Identities=18%  Similarity=0.149  Sum_probs=160.1

Q ss_pred             ChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHH-hhcCChhhHHHHHHcCCcHHHHHHHhhccCCC
Q 005282           81 NEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALG-LLAVKPEHQQIIVDTGALPHLVSLLKQYKNGG  159 (704)
Q Consensus        81 ~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~-~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~  159 (704)
                      ...-+...++.|+...|+.+......          ..+..+..+|. .+. -+..+    ....++.+.+.+...... 
T Consensus       493 ~K~~~~~~Ik~~~~~aLlrl~~~q~e----------~akl~~~~aL~~~i~-f~~~~----~~~v~~~~~s~~~~d~~~-  556 (748)
T KOG4151|consen  493 EKYERAKKIKPGGYEALLRLGQQQFE----------EAKLKWYHALAGKID-FPGER----SYEVVKPLDSALHNDEKG-  556 (748)
T ss_pred             hHHhcCccccccHHHHHHHHHHHhch----------HHHHHHHHHHhhhcC-CCCCc----hhhhhhhhcchhhhhHHH-
Confidence            34445566788999999999888875          77778888887 333 22221    124556666666554321 


Q ss_pred             CCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHh-cCChH
Q 005282          160 NSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVE-CNALP  238 (704)
Q Consensus       160 ~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~  238 (704)
                            --....+.++.||+..+...+..+.+..+++.+-.++..+++..+..++..+.||..+..-....+.+ ...++
T Consensus       557 ------~en~E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~  630 (748)
T KOG4151|consen  557 ------LENFEALEALTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLK  630 (748)
T ss_pred             ------HHHHHHHHHhhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCch
Confidence                  22345778899999888888888999999999888999999999999999999999844444444455 34567


Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHH-HHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHh
Q 005282          239 TLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKK-EVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQ  317 (704)
Q Consensus       239 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~-~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~  317 (704)
                      .....+...+......++.++..|+......+. ..........+..++.+.+.++++..+..+.|+.....+....+..
T Consensus       631 ~w~~~~e~~~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~  710 (748)
T KOG4151|consen  631 LWNLNLEVADEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFE  710 (748)
T ss_pred             HHHHHHHhhhhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhcc
Confidence            777777777778888888888877766565555 4445678888999999999999999998888866544444444544


Q ss_pred             cCChHHHHHh
Q 005282          318 RGAVRPLIEM  327 (704)
Q Consensus       318 ~~~i~~L~~l  327 (704)
                      ...++.+..+
T Consensus       711 ~~~~~~l~~~  720 (748)
T KOG4151|consen  711 TEVMELLSGL  720 (748)
T ss_pred             chHHHHHHHH
Confidence            5555554444

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.92  E-value=0.25  Score=53.16  Aligned_cols=233  Identities=18%  Similarity=0.184  Sum_probs=103.9

Q ss_pred             HHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhh
Q 005282          249 ASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEML  328 (704)
Q Consensus       249 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll  328 (704)
                      +..+...+..+...+..++..+     ...+..+..+|.+.++.++-+|+.+|-+++. ++.... .    +...++.++
T Consensus       220 ~~LqlViVE~Irkv~~~~p~~~-----~~~i~~i~~lL~stssaV~fEaa~tlv~lS~-~p~alk-~----Aa~~~i~l~  288 (948)
T KOG1058|consen  220 DSLQLVIVELIRKVCLANPAEK-----ARYIRCIYNLLSSTSSAVIFEAAGTLVTLSN-DPTALK-A----AASTYIDLL  288 (948)
T ss_pred             HHHHHHHHHHHHHHHhcCHHHh-----hHHHHHHHHHHhcCCchhhhhhcceEEEccC-CHHHHH-H----HHHHHHHHH
Confidence            4444444444444443333222     2345566666666666666666666665542 222111 1    122233333


Q ss_pred             C-CCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcccCCc--hhhHHHhhCCccc
Q 005282          329 Q-SPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNED--NVADLVRVGGVQK  405 (704)
Q Consensus       329 ~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~--~~~~l~~~g~i~~  405 (704)
                      - .++-.++-....-|..+....   . -+-.|.+-.+++.|.+.+-+++..++.....|+.+.+  ..-.+.+......
T Consensus       289 ~kesdnnvklIvldrl~~l~~~~---~-~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT  364 (948)
T KOG1058|consen  289 VKESDNNVKLIVLDRLSELKALH---E-KILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKT  364 (948)
T ss_pred             HhccCcchhhhhHHHHHHHhhhh---H-HHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhc
Confidence            2 223333333333333333111   1 1123444557788899999999999998888875332  2222332222111


Q ss_pred             ccccccccccchHHHHHHHHHHHH---HhhcchhHHHHHHHhhccHHHHHHHHHHHHhccC-CCccceeeecCCcHHHHH
Q 005282          406 LQDGEFTVQPTKDCVARTLKRLEE---KVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCA-PDDCKTIFIDNNGLELLL  481 (704)
Q Consensus       406 l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~l~~~~~i~~L~  481 (704)
                      --........-.+.+...+..-+.   .+...+++.++..+.+.++..-......+..... .+.     ++...+..|+
T Consensus       365 ~~~e~d~~~~yRqlLiktih~cav~Fp~~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~-----Lr~~ii~~l~  439 (948)
T KOG1058|consen  365 HNEESDDNGKYRQLLIKTIHACAVKFPEVAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPN-----LRASIIEKLL  439 (948)
T ss_pred             cccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCch-----HHHHHHHHHH
Confidence            000000000001112222222221   2255678888888888876533322222222211 111     1223445555


Q ss_pred             HHHhh-cchhhhhhHHHHHHH
Q 005282          482 GLLES-TSVKQREESSVALYK  501 (704)
Q Consensus       482 ~ll~~-~~~~~~~~a~~~L~~  501 (704)
                      +-+.. ..+.+.+.|+|.++.
T Consensus       440 ~~~~~irS~ki~rgalwi~Ge  460 (948)
T KOG1058|consen  440 ETFPQIRSSKICRGALWILGE  460 (948)
T ss_pred             HhhhhhcccccchhHHHHHHH
Confidence            44432 445555666665553

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=96.86  E-value=0.039  Score=48.00  Aligned_cols=131  Identities=12%  Similarity=0.174  Sum_probs=102.3

Q ss_pred             hHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCC--CHHHHHH
Q 005282          135 HQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFV--DVKVQRA  212 (704)
Q Consensus       135 ~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~~~~~  212 (704)
                      +...++..||+..|++++.+.....+.  ..+...+++.++..|..++--..+ .....++..++.+.+..  ++.+...
T Consensus         3 FA~EFI~~~Gl~~L~~~iE~g~~~~~~--~~~~La~~L~af~eLMeHg~vsWd-~l~~~FI~Kia~~Vn~~~~d~~i~q~   79 (160)
T PF11841_consen    3 FAQEFISRDGLTLLIKMIEEGTEIQPC--KGEILAYALTAFVELMEHGIVSWD-TLSDSFIKKIASYVNSSAMDASILQR   79 (160)
T ss_pred             hHHHHHhccCHHHHHHHHHcCCccCcc--hHHHHHHHHHHHHHHHhcCcCchh-hccHHHHHHHHHHHccccccchHHHH
Confidence            456789999999999999987742111  127888999999999875443333 56667788888888843  6899999


Q ss_pred             HHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh
Q 005282          213 AAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPS  268 (704)
Q Consensus       213 a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~  268 (704)
                      ++..|-++...++.....+.+.=.++.|+..|+.++++++..++..+..+....++
T Consensus        80 sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~  135 (160)
T PF11841_consen   80 SLAILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADD  135 (160)
T ss_pred             HHHHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCh
Confidence            99999999986666666666666799999999999999999999999888765443

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=96.86  E-value=0.027  Score=56.50  Aligned_cols=208  Identities=13%  Similarity=0.157  Sum_probs=151.6

Q ss_pred             hhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhH-----HhHh--cCChHHHHHhhcCCCHHHHHHHHHHHHH
Q 005282          189 VRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKK-----LIVE--CNALPTLVLMLRSEDASVHFEAVGVIGN  261 (704)
Q Consensus       189 ~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~-----~~~~--~~~i~~L~~lL~~~~~~v~~~a~~~L~~  261 (704)
                      +...+.+..|+..|..-+-+.++.+..+..++.......+.     .+..  ..++..|+..-  +++++...+...|..
T Consensus        72 i~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy--~~~dial~~g~mlRe  149 (335)
T PF08569_consen   72 IYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGY--ENPDIALNCGDMLRE  149 (335)
T ss_dssp             HHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGG--GSTTTHHHHHHHHHH
T ss_pred             HHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHh--cCccccchHHHHHHH
Confidence            44557788899999988999999999999999764443322     2322  22344444333  456677777778888


Q ss_pred             HhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhc---CChHHHHHhhCCCCHHHHHH
Q 005282          262 LVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQR---GAVRPLIEMLQSPDSQLKEM  338 (704)
Q Consensus       262 l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~---~~i~~L~~ll~~~~~~v~~~  338 (704)
                      ++.. +...+.+.....+..+...+..++-++...|..++..+...++......+..   ..+.....++.+++.-++..
T Consensus       150 c~k~-e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrq  228 (335)
T PF08569_consen  150 CIKH-ESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQ  228 (335)
T ss_dssp             HTTS-HHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHH
T ss_pred             HHhh-HHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehh
Confidence            8766 6667777778888889999999999999999999998776666555555544   45678888899999999999


Q ss_pred             HHHHHHHhhcCCchhhhH----HhhCChHHHHHhhcCCChhHHHHHHHHHHHcccCCchhhHHHh
Q 005282          339 SAFALGRLAQDTHNQAGI----AQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADLVR  399 (704)
Q Consensus       339 a~~~L~~l~~~~~~~~~~----~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~  399 (704)
                      ++..|+.+.....+...+    ....-+..++.+|.+.+..+|..|..+..-+..+|..-+.+.+
T Consensus       229 slkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~  293 (335)
T PF08569_consen  229 SLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVD  293 (335)
T ss_dssp             HHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHH
T ss_pred             hHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHH
Confidence            999999999888776543    2335577788999999999999999999999988776655543

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=96.80  E-value=0.0026  Score=41.75  Aligned_cols=37  Identities=46%  Similarity=0.499  Sum_probs=34.4

Q ss_pred             hhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 005282          185 IKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLA  221 (704)
Q Consensus       185 ~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~  221 (704)
                      .+..+.+.|+++.|++++.++++.++..++++|+|++
T Consensus         4 ~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~   40 (41)
T smart00185        4 QKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS   40 (41)
T ss_pred             HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence            5667889999999999999999999999999999997

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.77  E-value=0.14  Score=52.38  Aligned_cols=140  Identities=19%  Similarity=0.180  Sum_probs=86.1

Q ss_pred             cCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHH-HHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHH
Q 005282          245 RSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVI-GLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRP  323 (704)
Q Consensus       245 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~-~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~  323 (704)
                      .+++..++..|++.|+|.+...|......... .+..++ .+....+.++..++..+|..+...-......-+=-++.-.
T Consensus       268 ~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~-~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialr  346 (533)
T KOG2032|consen  268 TDPSAKSRGMACRGLGNTASGAPDKVRTHKTT-QLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALR  346 (533)
T ss_pred             cCchhHHHHHHHHHHHHHhccCcHHHHHhHHH-HHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHH
Confidence            36788999999999999998755544333332 334444 4555667888999998888776321111111111244556


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHhhcCCc--hhhhHHh--hCChHHHHHhhcCCChhHHHHHHHHHH
Q 005282          324 LIEMLQSPDSQLKEMSAFALGRLAQDTH--NQAGIAQ--DGGILPLLKLLDSKNGSLQHNAAFALY  385 (704)
Q Consensus       324 L~~ll~~~~~~v~~~a~~~L~~l~~~~~--~~~~~~~--~~~~~~L~~ll~~~~~~v~~~a~~~L~  385 (704)
                      +..+..+.+++++..+....+.|+....  .+..+.+  .+...+++-.+.+.++.+-.++-..+.
T Consensus       347 lR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~  412 (533)
T KOG2032|consen  347 LRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRSELR  412 (533)
T ss_pred             HHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHHHHHH
Confidence            7777888999999999999988885432  2233332  234445555566677766544444443

>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised

Probab=96.76  E-value=0.002  Score=62.29  Aligned_cols=87  Identities=15%  Similarity=0.265  Sum_probs=74.2

Q ss_pred             eEeehhHHHHhhcCHHHHHhhcC---CCCCCCCCceEcC-CCCHHHHHHHHHHHhcCccccChhhHHHHHHHHhhhChHh
Q 005282          545 KQFYAHRICLLASSDAFRAMFDG---GYKEKNAKDVEIP-NIRWNVFELMMRFIYTGNVDVSVDIAQDLLRAADQYLLEG  620 (704)
Q Consensus       545 ~~~~~hk~iL~~~s~~f~~~f~~---~~~e~~~~~i~l~-~~~~~~~~~~l~~~Y~~~~~~~~~~~~~ll~~A~~~~~~~  620 (704)
                      +.|.|.+.+|...=.||+..+..   +..+  ..+|++. .-+...|+=+++|++.....++++++..++.-|++++|++
T Consensus        14 rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~--~~~idisVhCDv~iF~WLm~yv~~~~p~l~~~NvvsIliSS~FL~M~~   91 (317)
T PF11822_consen   14 RDFTCPRDLLVSEMRYFAEYLSRYINDSQR--WEEIDISVHCDVHIFEWLMRYVKGEPPSLTPSNVVSILISSEFLQMES   91 (317)
T ss_pred             eeeeccHHHHHHhhHHHHHHHhhcccccCc--CCCcceEEecChhHHHHHHHHhhcCCCcCCcCcEEEeEehhhhhccHH
Confidence            68999999999999999999965   2222  2345554 5778899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhC
Q 005282          621 LKRLCEYSIAQII  633 (704)
Q Consensus       621 l~~~c~~~l~~~~  633 (704)
                      |.+.|..|+..++
T Consensus        92 Lve~cl~y~~~~~  104 (317)
T PF11822_consen   92 LVEECLQYCHDHM  104 (317)
T ss_pred             HHHHHHHHHHHhH
Confidence            9999999986644

This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=96.75  E-value=0.43  Score=50.36  Aligned_cols=339  Identities=18%  Similarity=0.137  Sum_probs=181.4

Q ss_pred             HHHHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhh-----HHHH
Q 005282           66 AAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEH-----QQII  139 (704)
Q Consensus        66 ~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~-----~~~~  139 (704)
                      ......+.+|..++.++...+.+.. .++..+-...+....         .+....++.+|.++. ...+.     ....
T Consensus        17 ~~~~~~L~~l~~ls~~~~i~~~~~~-~ll~kl~~~~~~~~~---------~~~~~~il~tl~~~~~~~~~~~~~~~~~~y   86 (415)
T PF12460_consen   17 SNYERILEALAALSTSPQILETLSI-RLLNKLSIVCQSESS---------SDYCHAILSTLQSLLEKKQEDKQFEDNSWY   86 (415)
T ss_pred             hHHHHHHHHHHHHHCChhHHHHHHH-HHHHHHHHHhcCCCC---------hHHHHHHHHHHHHHHHhcccccccchHHHH
Confidence            4567788999999988777666633 444444444443322         356667777777776 22222     2334


Q ss_pred             HHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhc----------C-----
Q 005282          140 VDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLK----------F-----  204 (704)
Q Consensus       140 ~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~----------~-----  204 (704)
                      .+...++.+.+........... .++.+...+...+..+...-+..+..-.    +..+..+.-          .     
T Consensus        87 ~~~~lv~~l~~~~~~~~~~~~~-~~~~~L~~~~~l~~~iv~~l~~~~q~~~----~~~~~~lf~~~~~~~~~~~~~~~~~  161 (415)
T PF12460_consen   87 FHRILVPRLFELALQASDQSSD-LDDRVLELLSRLINLIVRSLSPEKQQEI----LDELYSLFLSPKSFSPFQPSSSTIS  161 (415)
T ss_pred             HHhHHHHHHHHHHHhhcccccc-cchHHHHHHHHHHHHHHHhCCHHHHHHH----HHHHHHHHccccccCCCCccccccc
Confidence            4445788888877665433322 1236666666666666643333222111    223333222          1     


Q ss_pred             -CCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhc-CCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHH
Q 005282          205 -VDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLR-SEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPV  282 (704)
Q Consensus       205 -~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L  282 (704)
                       .......-...++..+-.+..-.    .....+..++.+.. ..++..+..++.+++.++-.-+.  .. .-.+++..+
T Consensus       162 ~~~~~~~~l~~~il~~l~~~~~~~----~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~--~~-~l~~~l~~~  234 (415)
T PF12460_consen  162 EQQSRLVILFSAILCSLRKDVSLP----DLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPD--DD-DLDEFLDSL  234 (415)
T ss_pred             cccccHHHHHHHHHHcCCcccCcc----CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCC--hh-hHHHHHHHH
Confidence             11122222233333332211100    11124566666654 45688889999999888733111  11 111233333


Q ss_pred             HHHh-cCCChhHHHHHH----HHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCc------
Q 005282          283 IGLL-SSSCSESKREAA----LLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTH------  351 (704)
Q Consensus       283 ~~ll-~~~~~~~~~~a~----~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~------  351 (704)
                      ..-+ ...+...+..+.    |....+...+....     ...+..|+.++.+  +++...++.++.-+....+      
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~-----~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~  307 (415)
T PF12460_consen  235 LQSISSSEDSELRPQALEILIWITKALVMRGHPLA-----TELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKE  307 (415)
T ss_pred             HhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchH-----HHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCcc
Confidence            3333 222333333333    33333332222211     1246677777766  6677888899988886621      


Q ss_pred             ---hhhhHHhhC----ChHHHHHhhcCCChhHHHHHHHHHHHcccCCchhhHHHhhCCcccccccccccccchHHHHHHH
Q 005282          352 ---NQAGIAQDG----GILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTL  424 (704)
Q Consensus       352 ---~~~~~~~~~----~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~  424 (704)
                         +-..+.+..    .++.+++-.+..+.+.+.....+|.++..+-...-.+-+                         
T Consensus       308 ~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~-------------------------  362 (415)
T PF12460_consen  308 NHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPE-------------------------  362 (415)
T ss_pred             ccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHH-------------------------
Confidence               112233333    345566666666666788888888888653221111111                         


Q ss_pred             HHHHHHhhcchhHHHHHHHhhccHHHHHHHHHHHHhccCCC
Q 005282          425 KRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPD  465 (704)
Q Consensus       425 ~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  465 (704)
                             .+.++|.+++-+..++++++..+..+|..+..+.
T Consensus       363 -------l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~  396 (415)
T PF12460_consen  363 -------LPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA  396 (415)
T ss_pred             -------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence                   1236777888888899999999999998885544

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.73  E-value=0.0055  Score=59.48  Aligned_cols=100  Identities=19%  Similarity=0.205  Sum_probs=72.5

Q ss_pred             chHHhhhcCCC--cccEEEEE-cCeEeehhHHHHhhcCHHHHHhhcCCCCCCCCCceEcCCCCHHHHHHHHHHHhcCccc
Q 005282          524 YLGEQFVNNPT--LSDVTFVV-EGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFIYTGNVD  600 (704)
Q Consensus       524 ~l~~~~~~~~~--~~d~~~~~-~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~  600 (704)
                      ++...+.+...  ..|+.+.. +|..|.|||..|+++|++|..-+..-|..+  .+|.-..+-+..|..|++|+|-..-.
T Consensus       136 hi~s~l~dt~l~~~~di~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~~~~--heI~~~~v~~~~f~~flk~lyl~~na  213 (516)
T KOG0511|consen  136 HIQSSLRDTFLGCCHDIDFLQQEGANFDAHKFLLEARSSNYFPKDVMFYVQG--HEIEAHRVILSAFSPFLKQLYLNTNA  213 (516)
T ss_pred             HHHHHhhccccccccchHHHhhccccccHHHHHHHhhhcccCchhhhhcccc--CchhhhhhhHhhhhHHHHHHHHhhhh
Confidence            34444444443  34666665 688899999999999999987666544322  35555567789999999999987444


Q ss_pred             cChhhHHHHHHHHhhhChHhHHHHH
Q 005282          601 VSVDIAQDLLRAADQYLLEGLKRLC  625 (704)
Q Consensus       601 ~~~~~~~~ll~~A~~~~~~~l~~~c  625 (704)
                      .-.+....++.+..+|+.+.+....
T Consensus       214 ~~~~qynallsi~~kF~~e~l~~~~  238 (516)
T KOG0511|consen  214 EWKDQYNALLSIEVKFSKEKLSLEI  238 (516)
T ss_pred             hhhhHHHHHHhhhhhccHHHhHHHH
Confidence            4556668999999999988776554

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=96.72  E-value=0.014  Score=54.95  Aligned_cols=179  Identities=16%  Similarity=0.160  Sum_probs=117.9

Q ss_pred             HHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc--CChhhHHHHHHcCCc
Q 005282           68 AKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA--VKPEHQQIIVDTGAL  145 (704)
Q Consensus        68 ~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~--~~~~~~~~~~~~g~l  145 (704)
                      ...|+..|..++.+|+.+..++++.+.-.|..+|...+.    ..+| +.+|..+.++++.+.  ++++....+.+.+.+
T Consensus        67 VcnaLaLlQ~vAshpetr~~Fl~a~iplyLyPfL~tt~k----~r~~-E~LRLtsLGVIgaLvK~d~~evi~fLl~tEii  141 (262)
T PF04078_consen   67 VCNALALLQCVASHPETRMPFLKAHIPLYLYPFLNTTSK----TRPF-EYLRLTSLGVIGALVKTDDPEVISFLLQTEII  141 (262)
T ss_dssp             HHHHHHHHHHHHH-TTTHHHHHHTTGGGGGHHHHH--------SHHH-HHHHHHHHHHHHHHHTT--HHHHHHHHCTTHH
T ss_pred             HHHHHHHHHHHHcChHHHHHHHHcCchhhehhhhhcccc----cccc-chhhHhHHHHHHHHHcCCcHHHHHHHHhhchH
Confidence            456666677778899999999999999999999987764    2222 378999999999999  577888899999999


Q ss_pred             HHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhh------h-hccCCcHHHH-HHhcCCCHHHHHHHHHHH
Q 005282          146 PHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTR------V-RVEDGIPPLV-ELLKFVDVKVQRAAAGAL  217 (704)
Q Consensus       146 ~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~------~-~~~~~i~~L~-~ll~~~~~~~~~~a~~~L  217 (704)
                      |..++.+...+.        -.+..|..++..+..++......      + .-..++..++ .+.+.+++.+.++.+++-
T Consensus       142 plcLr~me~Gse--------lSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCY  213 (262)
T PF04078_consen  142 PLCLRIMEFGSE--------LSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCY  213 (262)
T ss_dssp             HHHHHHHHHS-H--------HHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHH
T ss_pred             HHHHHHHHhccH--------HHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHH
Confidence            999999998764        55667777777776533222111      1 1112233333 344578999999999999


Q ss_pred             HHhccCCchhhHHhHhcCChHHHHH-----hhcCCCHHHHHHHHHHHHHH
Q 005282          218 RTLAFKNDENKKLIVECNALPTLVL-----MLRSEDASVHFEAVGVIGNL  262 (704)
Q Consensus       218 ~~l~~~~~~~~~~~~~~~~i~~L~~-----lL~~~~~~v~~~a~~~L~~l  262 (704)
                      ..|+. ++..++.+...  +|..++     -+-.+|+.++.+--..+.|+
T Consensus       214 lRLsd-nprar~aL~~~--LP~~Lrd~~f~~~l~~D~~~k~~l~qLl~nl  260 (262)
T PF04078_consen  214 LRLSD-NPRAREALRQC--LPDQLRDGTFSNILKDDPSTKRWLQQLLSNL  260 (262)
T ss_dssp             HHHTT-STTHHHHHHHH--S-GGGTSSTTTTGGCS-HHHHHHHHHHHHHT
T ss_pred             HHHcc-CHHHHHHHHHh--CcHHHhcHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            99995 78777776542  222111     11134777888777777766

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []

Probab=96.70  E-value=0.0087  Score=43.44  Aligned_cols=56  Identities=18%  Similarity=0.365  Sum_probs=45.3

Q ss_pred             EEEEE-cCeEeehhHHHHhhcCHHHHHhhcCCCCCCCCCceEcCCCCHHHHHHHHHHHhc
Q 005282          538 VTFVV-EGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFIYT  596 (704)
Q Consensus       538 ~~~~~-~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~  596 (704)
                      +.++. ||..|.+.+.+.. .|..++.|+.+...+..  .|++++++...++.+++|++.
T Consensus         3 v~L~SsDg~~f~V~~~~a~-~S~~i~~ml~~~~~~~~--~Ipl~~v~~~~L~kViewc~~   59 (62)
T PF03931_consen    3 VKLVSSDGQEFEVSREAAK-QSKTIKNMLEDLGDEDE--PIPLPNVSSRILKKVIEWCEH   59 (62)
T ss_dssp             EEEEETTSEEEEEEHHHHT-TSHHHHHHHHCTCCCGT--EEEETTS-HHHHHHHHHHHHH
T ss_pred             EEEEcCCCCEEEeeHHHHH-HhHHHHHHHhhhccccc--ccccCccCHHHHHHHHHHHHh
Confidence            44554 7899999998887 89999999986444333  799999999999999999974

It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=96.70  E-value=0.11  Score=53.36  Aligned_cols=289  Identities=15%  Similarity=0.117  Sum_probs=158.5

Q ss_pred             hhhHHHHHHHHHHHHhhhccCCchhhHHHHHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHH
Q 005282           39 TQQDLVQDIRAQIDILNSKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEV  118 (704)
Q Consensus        39 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v  118 (704)
                      +++++.+.+..+++-|..     ......++.++--|.....++.++..+...|.++.++..+.....        |+ +
T Consensus        15 en~rf~Dev~ylld~l~~-----~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~--------d~-~   80 (361)
T PF07814_consen   15 ENQRFADEVEYLLDGLES-----SSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPD--------DD-I   80 (361)
T ss_pred             hhhhHHHHHHHHHhhccc-----CCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccc--------hH-H
Confidence            467788888888887752     233456888888888888899999999999999999999977664        22 4


Q ss_pred             HHHHHHH-HHhhcCChhhHHHHHHcCCcHHHHHHHh--hccCCCCCcc--hhHHHHHHHHHHHHhhhcChhhhhhhhccC
Q 005282          119 EKECAFA-LGLLAVKPEHQQIIVDTGALPHLVSLLK--QYKNGGNSRA--LSGVIRRAADAITNLAHENANIKTRVRVED  193 (704)
Q Consensus       119 ~~~a~~~-L~~l~~~~~~~~~~~~~g~l~~L~~lL~--~~~~~~~~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~  193 (704)
                      ...++.+ +.-++.+...-..+.+.+....++.++.  ...+.....+  ...-.......+...+...       ...+
T Consensus        81 ~~l~~a~i~~~l~~d~~~~~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~lsk~~~~~~~~~~~~-------~~~~  153 (361)
T PF07814_consen   81 LALATAAILYVLSRDGLNMHLLLDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNLSKVQQKSRSLCKEL-------LSSG  153 (361)
T ss_pred             HHHHHHHHHHHHccCCcchhhhhchhHHHHHHHHhccccccccccchhhhhhhhhhHHHHHHHHHHHHH-------Hhcc
Confidence            4444444 4444455444455556667777788888  2111000000  0011111111122211100       0000


Q ss_pred             CcHHHHHHhcCCCHHHHHHHHHHHHHhc--------------cCCchhhHHhHhcCChHHHHHhhcC----C--------
Q 005282          194 GIPPLVELLKFVDVKVQRAAAGALRTLA--------------FKNDENKKLIVECNALPTLVLMLRS----E--------  247 (704)
Q Consensus       194 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~--------------~~~~~~~~~~~~~~~i~~L~~lL~~----~--------  247 (704)
                      ...   .--......-+..|+.++..++              ...+..++.+...|++..++..+.+    .        
T Consensus       154 ~~~---~~~~~~~lsp~~lall~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~  230 (361)
T PF07814_consen  154 SSW---KSPKPPELSPQTLALLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDD  230 (361)
T ss_pred             ccc---cccCCcccccccHHHHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccc
Confidence            000   0000111223334444444442              1112345667777888888888751    1        


Q ss_pred             ----CHHHHHHHHHHHHHHhcCChhhHHHHHHc--CCHHHHH-HHhcC---CChhHHHHHHHHHHHHhccCCcchHHHHh
Q 005282          248 ----DASVHFEAVGVIGNLVHSSPSIKKEVILA--GALQPVI-GLLSS---SCSESKREAALLLGQFAAADSNSKVHIVQ  317 (704)
Q Consensus       248 ----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--~~l~~L~-~ll~~---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~  317 (704)
                          +......++++|-+.+..++.....+...  +.+..+. .++..   ........+++.+.|++.+++.....+..
T Consensus       231 ~~~~~l~~l~~cl~ILEs~T~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s  310 (361)
T PF07814_consen  231 PSLQSLIDLERCLSILESVTFLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFAS  310 (361)
T ss_pred             cchHHHHHHHHHHHHHHHHHhcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhh
Confidence                12355678889988887766666655542  3333333 33322   22334567888999998777666666555


Q ss_pred             cCChHHHHHhh-------C-------CCCHHHHHHHHHHHHHhhcCCc
Q 005282          318 RGAVRPLIEML-------Q-------SPDSQLKEMSAFALGRLAQDTH  351 (704)
Q Consensus       318 ~~~i~~L~~ll-------~-------~~~~~v~~~a~~~L~~l~~~~~  351 (704)
                      .++...+..+.       .       ....+...-++.+|.|++.+.+
T Consensus       311 ~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~D~~IL~Lg~LINL~E~s~  358 (361)
T PF07814_consen  311 PKLGQQLGLIVTSFFCVLSLPNYVPEESSFDILILALGLLINLVEHSE  358 (361)
T ss_pred             hHhccchHHHHHhhcccccccccccccccchHHHHHHHhHHHheeeCc
Confidence            43332222111       1       1124667778888888887654

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>PRK14707 hypothetical protein; Provisional

Probab=96.65  E-value=1.3  Score=53.66  Aligned_cols=413  Identities=16%  Similarity=0.147  Sum_probs=206.3

Q ss_pred             HHHHHHHHHHHH-hhcChhHHHHHHhCCChHHHHhhcc-CCCcCCCCCCCCchHHHHHHHHHH-HhhcCChhhHHHHHHc
Q 005282           66 AAAKTASHALVE-FAKNEEIVSLIVDNGAVPALVEHLQ-TPPQLTNAQIPYEHEVEKECAFAL-GLLAVKPEHQQIIVDT  142 (704)
Q Consensus        66 ~~~~~a~~~L~~-l~~~~~~~~~l~~~g~i~~L~~lL~-~~~~~~~~~~~~d~~v~~~a~~~L-~~l~~~~~~~~~~~~~  142 (704)
                      .++..|...|.. +..+++.++.+ +.-.+...+..|. -++.          .+...|+..| ..++.+++.+..+- .
T Consensus       305 ~vc~~Aa~~la~rl~~d~~l~~~~-~~~~~~~~LNalsKWpd~----------~~C~~Aa~~LA~rl~~d~~l~~~l~-~  372 (2710)
T PRK14707        305 PVCAEAAIALAERLADDPELCKAL-NARGLSTALNALSKWPDN----------PVCAAAVSALAERLVADPELRKDLE-P  372 (2710)
T ss_pred             hHHHHHHHHHHHHHhccHhhhhcc-chHHHHHHHHHhhcCCCc----------hhHHHHHHHHHHHhccCHhhhcccc-h
Confidence            344555554444 55577777665 3333444444444 4433          4444454444 45558888777665 3


Q ss_pred             CCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhcc
Q 005282          143 GALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAF  222 (704)
Q Consensus       143 g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~  222 (704)
                      -++..+++.+++..++       .....++..|..-..++++.+..+-..|+-..|-.+-+-++..+...+...|..-..
T Consensus       373 q~~a~~lNalsKWp~~-------~~c~~aa~~LA~~l~~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la  445 (2710)
T PRK14707        373 QGVSSVLNALSKWPDT-------PVCAAAASALAEHVVDDLELRKGLDPQGVSNALNALAKWPDLPICGQAVSALAGRLA  445 (2710)
T ss_pred             hHHHHHHhhhhcCCCc-------hHHHHHHHHHHHHhccChhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHh
Confidence            4567777888887653       667777777777666788888877777777777777777777777777777766555


Q ss_pred             CCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHH-HHHHHH
Q 005282          223 KNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKR-EAALLL  301 (704)
Q Consensus       223 ~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~-~a~~~L  301 (704)
                      ++.+.++.+--.++...|-.+-+=+|..+...++..|..=...++...+.+--.++...|-.+-+-++...-. .+.+.-
T Consensus       446 ~d~~l~~~~~p~~va~~LnalSKWPd~p~c~~aa~~La~~l~~~~~l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~lA  525 (2710)
T PRK14707        446 HDTELCKALDPINVTQALDALSKWPDTPICGQTASALAARLAHERRLRKALKPQEVVIALHSLSKWPDTPICAEAASALA  525 (2710)
T ss_pred             ccHHHHhhcChHHHHHHHHHhhcCCCChhHHHHHHHHHHHhcccHHHHhhcCHHHHHHHHHHhhcCCCcHHHHHHHHHHH
Confidence            5667666655444444443333446666666666666554444455555444444444444444444444333 333333


Q ss_pred             HHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhc-CCChhHHHHH
Q 005282          302 GQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLD-SKNGSLQHNA  380 (704)
Q Consensus       302 ~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~-~~~~~v~~~a  380 (704)
                      +.+.. .......+...++...+-.+-+.++...-+.+...|..+.........-.....+..+++-|+ -.+......+
T Consensus       526 ~rl~~-~~~l~~~~~~~~~~~~lnalSKwp~s~~C~~A~~~iA~~l~~~~~~~~~L~aq~Vs~llNaLSKWP~~~aC~~A  604 (2710)
T PRK14707        526 ERVVD-ELQLRKAFDAHQVVNTLKALSKWPDKQLCAVAASGLAERLADEPQLPKDLHRQGVVIVLNALSKWPDTAVCAEA  604 (2710)
T ss_pred             HHhcc-chhhhhhhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHhhcchhhHHhhhhhHHHHHHHhhccCCCcHHHHHH
Confidence            33331 222222223333333444444555555445555566555433333333333445556666653 3444444444


Q ss_pred             HHHHHHcccCCchhhHHHhhCCcccccccccccccchHHHHHHHHHHH----------HHhhcchhHHHHHHH-hhccHH
Q 005282          381 AFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLE----------EKVHGRVLNHLLYLL-RVADRA  449 (704)
Q Consensus       381 ~~~L~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~L~~ll-~~~~~~  449 (704)
                      +..|......+.....-.....+..+++...+......|.. ....+.          ..+...-+.-+++-+ +-.+.+
T Consensus       605 a~~LA~~l~~~~~lr~~l~~q~lan~lNALSKWP~s~~C~~-Aa~rLA~rl~~~~~l~~~fnaQ~vAn~LNALSKWPe~e  683 (2710)
T PRK14707        605 VNALAERLVDEPDLRKELDPVDVTNVLNALSKWPGTEVCAE-VARLLAGRLVGDRLLRKTFNSLDVANALNALSKWPDTP  683 (2710)
T ss_pred             HHHHHHHhccChhhhhhccHHHHHHHHhhhhcCCCchHHHH-HHHHHHHHhhhchhhHhhcchHHHHHHHHhhhcCCCch
Confidence            44444333333332111222223333333333333323311 111111          111111122223333 334555


Q ss_pred             HHHHHHHHHH-hccCCCccceeeecCCcHHHHHHHHhh-cchhhhhhHHHHHH
Q 005282          450 VKRRVTLALA-HLCAPDDCKTIFIDNNGLELLLGLLES-TSVKQREESSVALY  500 (704)
Q Consensus       450 v~~~a~~~L~-~l~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~  500 (704)
                      ....|+..|. .|+.++.-+..+ ..-++..++.-+.. +.......|+..|.
T Consensus       684 ~Cr~Aa~~LA~rLa~~~~Lr~al-~pQ~vAN~LNALSKWP~~~~Cr~AA~~LA  735 (2710)
T PRK14707        684 VCAAAAGGMAERLAADPGLRKEL-NPVDVANALNALSKWPRTPVCAAVASALA  735 (2710)
T ss_pred             HHHHHHHHHHHHHhcChhhHhhc-CHHHHHHHHhhhhcCCCcHHHHHHHHHHH
Confidence            5555555554 446666555543 44566666666654 33333344444333

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=96.65  E-value=0.36  Score=54.14  Aligned_cols=199  Identities=16%  Similarity=0.210  Sum_probs=121.7

Q ss_pred             HHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchh
Q 005282           86 SLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALS  165 (704)
Q Consensus        86 ~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~  165 (704)
                      ..+.+.|++..++.++..-..     ..-+.+.....+.+|..++.-+.+|+.+++.|+++.|+..+...-.........
T Consensus       111 ~v~~~~gGL~~ll~~l~~~~~-----~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~  185 (802)
T PF13764_consen  111 SVLAECGGLEVLLSRLDSIRD-----FSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQA  185 (802)
T ss_pred             HHhhcCCCHHHHHHHHHhhcc-----ccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccc
Confidence            445578999999999888543     001235667778888888888999999999999999999996433221111112


Q ss_pred             HHHHHHHHHHHHhhhcChhh----hhhhhcc--------CCcHHHHHHhcC----CCHHHHHHHHHHHHHhccCCchhhH
Q 005282          166 GVIRRAADAITNLAHENANI----KTRVRVE--------DGIPPLVELLKF----VDVKVQRAAAGALRTLAFKNDENKK  229 (704)
Q Consensus       166 ~~~~~a~~~L~~l~~~~~~~----~~~~~~~--------~~i~~L~~ll~~----~~~~~~~~a~~~L~~l~~~~~~~~~  229 (704)
                      ++.+..+.++-.+..+....    .......        .-+..+++.+.+    .++.+....+++|-.|+.++++.-+
T Consensus       186 ~i~E~LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~  265 (802)
T PF13764_consen  186 EIAEQLLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMD  265 (802)
T ss_pred             hHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHH
Confidence            56666666666554321110    0011111        126667776664    4689999999999999998877777


Q ss_pred             HhHhcCChHHHHHhhc--CCCHHHHHHHHHHHHHHhcCC------hhhHHHHHHcCCHHHHHHHhcCCCh
Q 005282          230 LIVECNALPTLVLMLR--SEDASVHFEAVGVIGNLVHSS------PSIKKEVILAGALQPVIGLLSSSCS  291 (704)
Q Consensus       230 ~~~~~~~i~~L~~lL~--~~~~~v~~~a~~~L~~l~~~~------~~~~~~~~~~~~l~~L~~ll~~~~~  291 (704)
                      .+++.  +...+++=.  .....--...+.+++.++.+-      ...++.+++.|++...+.+|...-+
T Consensus       266 ~Lv~~--F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P  333 (802)
T PF13764_consen  266 ALVEH--FKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFP  333 (802)
T ss_pred             HHHHH--HHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCc
Confidence            66654  222222211  111111123355666665432      2456777788888888877765434

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=96.64  E-value=0.21  Score=54.45  Aligned_cols=346  Identities=14%  Similarity=0.146  Sum_probs=181.9

Q ss_pred             HHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhh------hhh
Q 005282          117 EVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKT------RVR  190 (704)
Q Consensus       117 ~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~------~~~  190 (704)
                      -+.-.++..|+.|+-...+...+++.|++..|+..=+-+.          .......+|+.+.. +...-+      ..+
T Consensus       368 ~l~~~~~k~~~~l~~h~kfa~~fv~~~gi~kll~vpr~s~----------~~~g~s~cly~~~~-~q~~mervc~~p~~v  436 (1516)
T KOG1832|consen  368 PLLPDVMKLICALAAHRKFAAMFVERRGILKLLAVPRVSE----------TFYGLSSCLYTIGS-LQGIMERVCALPLVV  436 (1516)
T ss_pred             cccHHHHHHHHHHHHhhHHHHHHHHhhhhHHHhcCCCchh----------hhhhHHHHHHHHhh-hhhHHHHHhhccHHH
Confidence            3555788888899977788889999999888776544322          12222334444432 111111      122


Q ss_pred             ccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcC--------CC-----------HHH
Q 005282          191 VEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRS--------ED-----------ASV  251 (704)
Q Consensus       191 ~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~--------~~-----------~~v  251 (704)
                      -..++..-+.++..+...-+.++...+...-. ....-+.+-...+++.|+.++++        .+           ...
T Consensus       437 ~~~vv~~~~~l~~cs~~~~~~~~~~ff~~~f~-frail~~fd~~d~l~~l~~~~~~~~~~~~~n~d~~l~e~~i~ss~Q~  515 (1516)
T KOG1832|consen  437 IHQVVKLAIELLDCSQDQARKNSALFFAAAFV-FRAILDAFDAQDSLQKLLAILKDAASVTGANTDRSLPEVMISSSKQM  515 (1516)
T ss_pred             HHHHHHHHHHHHhcchhhccchHHHHHHHHHH-HHHHHHHHhhhhHHHHHHHHHHHHHHHhccCcCccccHHHhhhhhhh
Confidence            33445555666664433333333222221110 11112223334455666655541        11           122


Q ss_pred             HHHHHHHHHHHhcCC-----hhhHHHHHHcCCHHHHHHHhcCCC------hhHHHHHHHHHHHHhccCC-------cchH
Q 005282          252 HFEAVGVIGNLVHSS-----PSIKKEVILAGALQPVIGLLSSSC------SESKREAALLLGQFAAADS-------NSKV  313 (704)
Q Consensus       252 ~~~a~~~L~~l~~~~-----~~~~~~~~~~~~l~~L~~ll~~~~------~~~~~~a~~~L~~l~~~~~-------~~~~  313 (704)
                      -...|.+|..-....     +..+..-+..+.....+.-+..+.      ....+..++-+..+....+       ....
T Consensus       516 ~~htC~alR~Yf~AHl~Ikve~~~k~~~~r~~~g~~~~~i~~~~~P~~~s~~~~e~I~~q~e~~~~~gp~f~~~~w~~ae  595 (1516)
T KOG1832|consen  516 AFHTCFALRQYFRAHLLIKVESIRKSRISRGGVGSSMKNIRAAYKPLDISNEAVEAIFLQLEKDRRLGPTFVKAQWPAAE  595 (1516)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCccccccccCCCcchhhhhHHHHHHHHHHHHHHhChhhhhhcchHHH
Confidence            334555554433221     222333334445555554443221      1223333443333322222       2233


Q ss_pred             HHHhcCChHHHHHhhCC--------CCHHHHHHHHHHHHHhhcCCchhhhHHhh--------CChHHHHHhhc----CCC
Q 005282          314 HIVQRGAVRPLIEMLQS--------PDSQLKEMSAFALGRLAQDTHNQAGIAQD--------GGILPLLKLLD----SKN  373 (704)
Q Consensus       314 ~~~~~~~i~~L~~ll~~--------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--------~~~~~L~~ll~----~~~  373 (704)
                      .+.+.+.+..++.+..-        +..++...|+.+|+-+..-+..+..+...        .|+..++..-.    ..+
T Consensus       596 nflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~D  675 (1516)
T KOG1832|consen  596 NFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGSNSIVD  675 (1516)
T ss_pred             HHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeecccccccccC
Confidence            45666777777777653        23467778888888888888877665432        24444444332    238


Q ss_pred             hhHHHHHHHHHHHcccCC-chhhHHHhhCCcccc-cccccccccchHHHHHHHHHHHHHh-hcchhHHHHHHHhhcc---
Q 005282          374 GSLQHNAAFALYGLADNE-DNVADLVRVGGVQKL-QDGEFTVQPTKDCVARTLKRLEEKV-HGRVLNHLLYLLRVAD---  447 (704)
Q Consensus       374 ~~v~~~a~~~L~~l~~~~-~~~~~l~~~g~i~~l-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~~ll~~~~---  447 (704)
                      ++++..|+.++.|+...| +++......=+-+.= .+.-...++...-+-..+.+..+.+ ..+-+..|+.++.-..   
T Consensus       676 pei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P~t  755 (1516)
T KOG1832|consen  676 PEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNPPT  755 (1516)
T ss_pred             HHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCC
Confidence            999999999999999855 666544332111000 0000011112223344555555555 3356788888887654   


Q ss_pred             --HHHHHHHHHHHHhccCCCccceeeecC
Q 005282          448 --RAVKRRVTLALAHLCAPDDCKTIFIDN  474 (704)
Q Consensus       448 --~~v~~~a~~~L~~l~~~~~~~~~l~~~  474 (704)
                        ..++.-||.+|.-|++++..++++.+.
T Consensus       756 ~aD~IRalAc~~L~GLaR~~tVrQIltKL  784 (1516)
T KOG1832|consen  756 TADCIRALACRVLLGLARDDTVRQILTKL  784 (1516)
T ss_pred             cHHHHHHHHHHHHhccccCcHHHHHHHhC
Confidence              568889999999999999888665443

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=96.62  E-value=0.18  Score=46.60  Aligned_cols=150  Identities=10%  Similarity=0.105  Sum_probs=110.0

Q ss_pred             HHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhh-cChhhhhhhhccCCcHHH
Q 005282          120 KECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAH-ENANIKTRVRVEDGIPPL  198 (704)
Q Consensus       120 ~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~~~~i~~L  198 (704)
                      ..|...|--++..|+.|..+.++..--.+-.+|.....+.+   ..-++..+++.++.+.. ++.+.-..+...+++|..
T Consensus        97 cnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~---fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlC  173 (293)
T KOG3036|consen   97 CNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRP---FEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLC  173 (293)
T ss_pred             HHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCc---hHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHH
Confidence            35556666666999999999999887788888876654333   34788999999999984 344556677889999999


Q ss_pred             HHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhc--------CCh-HHHHHhhcCCCHHHHHHHHHHHHHHhcCChhh
Q 005282          199 VELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVEC--------NAL-PTLVLMLRSEDASVHFEAVGVIGNLVHSSPSI  269 (704)
Q Consensus       199 ~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~--------~~i-~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~  269 (704)
                      ++.+..++...+..|..++..+.. ++..-..+...        ..+ ..+.++.+.+++.....++++..+++.+ +..
T Consensus       174 Lrime~GSelSKtvA~fIlqKIll-dD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdn-pra  251 (293)
T KOG3036|consen  174 LRIMESGSELSKTVATFILQKILL-DDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDN-PRA  251 (293)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHhh-ccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC-HHH
Confidence            999999999999999999998875 44333222211        112 2334455678899999999999999854 666


Q ss_pred             HHHHH
Q 005282          270 KKEVI  274 (704)
Q Consensus       270 ~~~~~  274 (704)
                      +.++.
T Consensus       252 r~aL~  256 (293)
T KOG3036|consen  252 RAALR  256 (293)
T ss_pred             HHHHH
Confidence            65544

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.56  E-value=0.4  Score=51.64  Aligned_cols=215  Identities=14%  Similarity=0.162  Sum_probs=133.2

Q ss_pred             ChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHH
Q 005282           93 AVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAA  172 (704)
Q Consensus        93 ~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~  172 (704)
                      .|.-+..+|.+.++          .++.+|+..|..++.+|..-...     ...+++++.+..++       .+....+
T Consensus       244 ~i~~i~~lL~stss----------aV~fEaa~tlv~lS~~p~alk~A-----a~~~i~l~~kesdn-------nvklIvl  301 (948)
T KOG1058|consen  244 YIRCIYNLLSSTSS----------AVIFEAAGTLVTLSNDPTALKAA-----ASTYIDLLVKESDN-------NVKLIVL  301 (948)
T ss_pred             HHHHHHHHHhcCCc----------hhhhhhcceEEEccCCHHHHHHH-----HHHHHHHHHhccCc-------chhhhhH
Confidence            35667777777765          77888888888888666644332     35666666554443       2333333


Q ss_pred             HHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhh-c------
Q 005282          173 DAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLML-R------  245 (704)
Q Consensus       173 ~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL-~------  245 (704)
                      .-|..+...+.     -+-.|.+--++++|.++|-+++..++.....|+...  +...+     +..|-+-+ .      
T Consensus       302 drl~~l~~~~~-----~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssr--Nvedi-----v~~Lkke~~kT~~~e~  369 (948)
T KOG1058|consen  302 DRLSELKALHE-----KILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSR--NVEDI-----VQFLKKEVMKTHNEES  369 (948)
T ss_pred             HHHHHHhhhhH-----HHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhc--cHHHH-----HHHHHHHHHhcccccc
Confidence            33333332111     112345555778888999999999999888887521  11111     11121111 1      


Q ss_pred             CCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHH
Q 005282          246 SEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLI  325 (704)
Q Consensus       246 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~  325 (704)
                      ..+..-|..-+.++...+...++..     +.+++.++..+.+.++......+..+.......+..+.     .++..|+
T Consensus       370 d~~~~yRqlLiktih~cav~Fp~~a-----atvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr~-----~ii~~l~  439 (948)
T KOG1058|consen  370 DDNGKYRQLLIKTIHACAVKFPEVA-----ATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLRA-----SIIEKLL  439 (948)
T ss_pred             ccchHHHHHHHHHHHHHhhcChHHH-----HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHHH-----HHHHHHH
Confidence            2344668888899988887666543     35788999999998887776666666666554444333     3455666


Q ss_pred             HhhCC-CCHHHHHHHHHHHHHhhcCCc
Q 005282          326 EMLQS-PDSQLKEMSAFALGRLAQDTH  351 (704)
Q Consensus       326 ~ll~~-~~~~v~~~a~~~L~~l~~~~~  351 (704)
                      ..+.. .+.++-..|+|.++.-|....
T Consensus       440 ~~~~~irS~ki~rgalwi~GeYce~~~  466 (948)
T KOG1058|consen  440 ETFPQIRSSKICRGALWILGEYCEGLS  466 (948)
T ss_pred             HhhhhhcccccchhHHHHHHHHHhhhH
Confidence            55543 456777889999999887765

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=96.55  E-value=0.039  Score=48.00  Aligned_cols=136  Identities=13%  Similarity=0.180  Sum_probs=101.0

Q ss_pred             HHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcc
Q 005282           84 IVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRA  163 (704)
Q Consensus        84 ~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~  163 (704)
                      +...++..||+..|+++++++..    .-++..++...++.++..|-+....--...+...+..++.++.....      
T Consensus         3 FA~EFI~~~Gl~~L~~~iE~g~~----~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~------   72 (160)
T PF11841_consen    3 FAQEFISRDGLTLLIKMIEEGTE----IQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAM------   72 (160)
T ss_pred             hHHHHHhccCHHHHHHHHHcCCc----cCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccc------
Confidence            34667889999999999999863    11122367778888888877432222234455567778888875543      


Q ss_pred             hhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhH
Q 005282          164 LSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKK  229 (704)
Q Consensus       164 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~  229 (704)
                      +..+...++..|-++...++.....+.+.--++.|+..|+.++++++..++..+-.|-.+.++.+.
T Consensus        73 d~~i~q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r  138 (160)
T PF11841_consen   73 DASILQRSLAILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKR  138 (160)
T ss_pred             cchHHHHHHHHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHH
Confidence            238999999999999987777777777777799999999999999999999999888765554433

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=96.52  E-value=0.015  Score=46.53  Aligned_cols=91  Identities=14%  Similarity=0.097  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCC
Q 005282          294 KREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKN  373 (704)
Q Consensus       294 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~  373 (704)
                      |.-++.+|...+..-+...... -..++++++..+.+++..+|..||++|.|++..........-...+..|.+++.+.+
T Consensus         3 R~ggli~Laa~ai~l~~~~~~~-l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d   81 (97)
T PF12755_consen    3 RKGGLIGLAAVAIALGKDISKY-LDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD   81 (97)
T ss_pred             hhHHHHHHHHHHHHchHhHHHH-HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence            3445555665554333332222 245799999999999999999999999999976544333333466777889999999


Q ss_pred             hhHHHHHHHHHHH
Q 005282          374 GSLQHNAAFALYG  386 (704)
Q Consensus       374 ~~v~~~a~~~L~~  386 (704)
                      +.|+..| ..|-+
T Consensus        82 ~~Vr~~a-~~Ld~   93 (97)
T PF12755_consen   82 ENVRSAA-ELLDR   93 (97)
T ss_pred             hhHHHHH-HHHHH
Confidence            9998777 44443

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=96.51  E-value=0.021  Score=57.60  Aligned_cols=184  Identities=17%  Similarity=0.160  Sum_probs=106.9

Q ss_pred             CCHHHHHHHHHHHHHhccCCchhhHH-hHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcC----ChhhHHHHHH--cC
Q 005282          205 VDVKVQRAAAGALRTLAFKNDENKKL-IVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHS----SPSIKKEVIL--AG  277 (704)
Q Consensus       205 ~~~~~~~~a~~~L~~l~~~~~~~~~~-~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~----~~~~~~~~~~--~~  277 (704)
                      .+.-++..|++++.-+.- .+..+.. ..-.+....++..+.+..-..|..++|+++||+..    -|.....--.  .-
T Consensus       403 ~~~lv~~aA~Ra~~VyVL-Hp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~  481 (728)
T KOG4535|consen  403 KNRLVKAAASRALGVYVL-HPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGL  481 (728)
T ss_pred             HHHHHHHHHHhhceeEEe-ccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHH
Confidence            344566677777776665 3333332 23344566677777777788999999999999842    1221111111  11


Q ss_pred             CHHHHHHHhc---CCChhHHHHHHHHHHHHhccCC---cchHHHHhcCChHHHH-HhhCCCCHHHHHHHHHHHHHhhcCC
Q 005282          278 ALQPVIGLLS---SSCSESKREAALLLGQFAAADS---NSKVHIVQRGAVRPLI-EMLQSPDSQLKEMSAFALGRLAQDT  350 (704)
Q Consensus       278 ~l~~L~~ll~---~~~~~~~~~a~~~L~~l~~~~~---~~~~~~~~~~~i~~L~-~ll~~~~~~v~~~a~~~L~~l~~~~  350 (704)
                      .+..++....   -.+..++.++..+|+|+..--.   +........+.+..+. ........+|+.++|.+++||..++
T Consensus       482 ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~  561 (728)
T KOG4535|consen  482 LLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNP  561 (728)
T ss_pred             HHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCc
Confidence            2233333322   2345678899999999864211   1111111122222222 2223456789999999999999886


Q ss_pred             chh--hhHHhhCChHHHHHhh-cCCChhHHHHHHHHHHHccc
Q 005282          351 HNQ--AGIAQDGGILPLLKLL-DSKNGSLQHNAAFALYGLAD  389 (704)
Q Consensus       351 ~~~--~~~~~~~~~~~L~~ll-~~~~~~v~~~a~~~L~~l~~  389 (704)
                      .-.  ..-+....++.|..++ +..|-.+|-.|+.+|..-..
T Consensus       562 a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~  603 (728)
T KOG4535|consen  562 ALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGK  603 (728)
T ss_pred             cccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCC
Confidence            542  2223334456677776 44788999999999887654

>PRK14707 hypothetical protein; Provisional

Probab=96.50  E-value=1.8  Score=52.60  Aligned_cols=334  Identities=18%  Similarity=0.138  Sum_probs=179.2

Q ss_pred             HHHHHHHHHHH-hhcChhHHHHHHhCCChHHHHhhccC-CCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHHHHHcC
Q 005282           67 AAKTASHALVE-FAKNEEIVSLIVDNGAVPALVEHLQT-PPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQIIVDTG  143 (704)
Q Consensus        67 ~~~~a~~~L~~-l~~~~~~~~~l~~~g~i~~L~~lL~~-~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~~~~g  143 (704)
                      .+..+...+.. ++.++..++.+ +.--+...+..|.. ++.          .+...|+..|..=. ++++.+..+- .-
T Consensus       264 ~C~~a~~~lA~rl~~~~~l~~al-~~q~vanalNalSKwpd~----------~vc~~Aa~~la~rl~~d~~l~~~~~-~~  331 (2710)
T PRK14707        264 VCAAAASALAERLVDDPGLRKAL-DPINVTQALNALSKWADL----------PVCAEAAIALAERLADDPELCKALN-AR  331 (2710)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHhc-CHHHHHHHHhhhhcCCCc----------hHHHHHHHHHHHHHhccHhhhhccc-hH
Confidence            34444444444 34456665555 33233333444433 333          56666666555544 8877765443 34


Q ss_pred             CcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccC
Q 005282          144 ALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFK  223 (704)
Q Consensus       144 ~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~  223 (704)
                      .+...++.|++..+.       .+...++.+|..-...+++.+..+-..|+-..|-.+-+-++......+...|..-..+
T Consensus       332 ~~~~~LNalsKWpd~-------~~C~~Aa~~LA~rl~~d~~l~~~l~~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~  404 (2710)
T PRK14707        332 GLSTALNALSKWPDN-------PVCAAAVSALAERLVADPELRKDLEPQGVSSVLNALSKWPDTPVCAAAASALAEHVVD  404 (2710)
T ss_pred             HHHHHHHHhhcCCCc-------hhHHHHHHHHHHHhccCHhhhcccchhHHHHHHhhhhcCCCchHHHHHHHHHHHHhcc
Confidence            556677777777653       5556666666554445676666555444444444444445555555555555554445


Q ss_pred             CchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHH
Q 005282          224 NDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQ  303 (704)
Q Consensus       224 ~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~  303 (704)
                      +++.++.+-..|+-..|-.+-+=++..+...++..|..-..++.+.++.+--.++...|-.+-+=++..+-..++..|..
T Consensus       405 d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~~~~p~~va~~LnalSKWPd~p~c~~aa~~La~  484 (2710)
T PRK14707        405 DLELRKGLDPQGVSNALNALAKWPDLPICGQAVSALAGRLAHDTELCKALDPINVTQALDALSKWPDTPICGQTASALAA  484 (2710)
T ss_pred             ChhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhccHHHHhhcChHHHHHHHHHhhcCCCChhHHHHHHHHHH
Confidence            77888777666665555555556788888888888877666666766655544544444344444566666677777766


Q ss_pred             HhccCCcchHHHHhcCChHHHHHhhCCCCH-HHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHH-hhcCCChhHHHHHH
Q 005282          304 FAAADSNSKVHIVQRGAVRPLIEMLQSPDS-QLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLK-LLDSKNGSLQHNAA  381 (704)
Q Consensus       304 l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~-ll~~~~~~v~~~a~  381 (704)
                      -...+++.++.+--.++...|-.+-+-++. ...+.+.+.-+.+.....-...+...+ +..+++ +-+..+....+.+.
T Consensus       485 ~l~~~~~l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~lA~rl~~~~~l~~~~~~~~-~~~~lnalSKwp~s~~C~~A~  563 (2710)
T PRK14707        485 RLAHERRLRKALKPQEVVIALHSLSKWPDTPICAEAASALAERVVDELQLRKAFDAHQ-VVNTLKALSKWPDKQLCAVAA  563 (2710)
T ss_pred             HhcccHHHHhhcCHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHhccchhhhhhhhhHH-HHHHHHhhhcCCchhHHHHHH
Confidence            555455544444333444444444444543 344445555555554333322222222 222333 33445556666666


Q ss_pred             HHHHHcccCCchhhHHHhhCCcccccccccccccchHHH
Q 005282          382 FALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCV  420 (704)
Q Consensus       382 ~~L~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~  420 (704)
                      ..|..+.........-.....+..+++...+......|.
T Consensus       564 ~~iA~~l~~~~~~~~~L~aq~Vs~llNaLSKWP~~~aC~  602 (2710)
T PRK14707        564 SGLAERLADEPQLPKDLHRQGVVIVLNALSKWPDTAVCA  602 (2710)
T ss_pred             HHHHHHhhcchhhHHhhhhhHHHHHHHhhccCCCcHHHH
Confidence            666655433333333333444555555555554444443

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.48  E-value=1.2  Score=49.90  Aligned_cols=313  Identities=14%  Similarity=0.115  Sum_probs=155.1

Q ss_pred             CchhhHHHHHHHHHHHHHhhc----ChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhh
Q 005282           60 SDETDRAAAKTASHALVEFAK----NEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEH  135 (704)
Q Consensus        60 ~~~~~~~~~~~a~~~L~~l~~----~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~  135 (704)
                      .+..+.....-|++.++++++    .+..+.. .+.=+++.+...++++-.          -.|.+|||+++.+++- ++
T Consensus       427 ~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~-mE~flv~hVfP~f~s~~g----------~Lrarac~vl~~~~~~-df  494 (1010)
T KOG1991|consen  427 PPNKNPRQKDGALRMVGSLASILLKKSPYKSQ-MEYFLVNHVFPEFQSPYG----------YLRARACWVLSQFSSI-DF  494 (1010)
T ss_pred             CCccChhhhhhHHHHHHHHHHHHccCCchHHH-HHHHHHHHhhHhhcCchh----------HHHHHHHHHHHHHHhc-cC
Confidence            555666677778888888774    2333222 244457778888888876          8999999999999911 11


Q ss_pred             HHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhh--ccCCcHHHHHHhcCC--------
Q 005282          136 QQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVR--VEDGIPPLVELLKFV--------  205 (704)
Q Consensus       136 ~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~--~~~~i~~L~~ll~~~--------  205 (704)
                      .+...-..++....+.|.++..       -.++..|+.+|..+..+.+.....+.  -.+.++.|+.+.+.-        
T Consensus       495 ~d~~~l~~ale~t~~~l~~d~~-------lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~v  567 (1010)
T KOG1991|consen  495 KDPNNLSEALELTHNCLLNDNE-------LPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTNV  567 (1010)
T ss_pred             CChHHHHHHHHHHHHHhccCCc-------CchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHHH
Confidence            1111222344555566663222       27888899999988865544322221  123333444443321        


Q ss_pred             --------C-------HHHHHHHHHHHHHhccC-----CchhhHHhHhcCChHHHHHhhcC--CCHHHH-----------
Q 005282          206 --------D-------VKVQRAAAGALRTLAFK-----NDENKKLIVECNALPTLVLMLRS--EDASVH-----------  252 (704)
Q Consensus       206 --------~-------~~~~~~a~~~L~~l~~~-----~~~~~~~~~~~~~i~~L~~lL~~--~~~~v~-----------  252 (704)
                              .       .++..+...+.+.+...     ....-+.+...|++..+-.++.+  ..+.+.           
T Consensus       568 me~iV~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~vi  647 (1010)
T KOG1991|consen  568 MEKIVCKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIVLPVI  647 (1010)
T ss_pred             HHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence                    1       12233333333333331     11233445566766666665542  233332           


Q ss_pred             ------------HHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcC-
Q 005282          253 ------------FEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRG-  319 (704)
Q Consensus       253 ------------~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~-  319 (704)
                                  +.++..+.+++...++....+  -|.++.+.+.+.....+--....-+|.|....+..   .+...+ 
T Consensus       648 ~~iL~~~i~dfyeE~~ei~~~~t~~~~~Isp~m--W~ll~li~e~~~~~~~dyf~d~~~~l~N~vt~g~~---~~~s~~~  722 (1010)
T KOG1991|consen  648 GFILKNDITDFYEELLEIVSSLTFLSKEISPIM--WGLLELILEVFQDDGIDYFTDMMPALHNYVTYGTP---SLLSNPD  722 (1010)
T ss_pred             HHHHHHhhHHHHHHHHHHHhhhhhhhcccCHHH--HHHHHHHHHHHhhhhHHHHHHHHHHHhhheeeCch---hhhccch
Confidence                        222222222221111111111  13455555666665555566777778877643332   222222 


Q ss_pred             ChH----HHHHhhCC--CCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhh----c--CCChhHHHHHHHHH-HH
Q 005282          320 AVR----PLIEMLQS--PDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLL----D--SKNGSLQHNAAFAL-YG  386 (704)
Q Consensus       320 ~i~----~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll----~--~~~~~v~~~a~~~L-~~  386 (704)
                      ..+    ....++.+  ....=.+.|+..+..+..+-.+...    ..++.++++.    .  ..+...+..++... .+
T Consensus       723 y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~iiL~~kg~~d----q~iplf~~~a~~~l~~~~e~s~~~~~~leVvina  798 (1010)
T KOG1991|consen  723 YLQILLEIIKKVLTSENGEDSDCESACKLLEVIILNCKGLLD----QYIPLFLELALSRLTREVETSELRVMLLEVVINA  798 (1010)
T ss_pred             HHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcCcHh----hHhHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence            222    33333433  2222334566666665543322111    1244444332    2  25667777777744 44


Q ss_pred             cccCCchhhHHHhh
Q 005282          387 LADNEDNVADLVRV  400 (704)
Q Consensus       387 l~~~~~~~~~l~~~  400 (704)
                      +-.+|.-.-.+.+.
T Consensus       799 lyynP~ltL~iLe~  812 (1010)
T KOG1991|consen  799 LYYNPKLTLGILEN  812 (1010)
T ss_pred             HHcCcHHHHHHHHH
Confidence            44566655444443

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=96.47  E-value=0.19  Score=45.92  Aligned_cols=92  Identities=24%  Similarity=0.265  Sum_probs=72.6

Q ss_pred             CHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcC-CHHHHHH
Q 005282          206 DVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAG-ALQPVIG  284 (704)
Q Consensus       206 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~-~l~~L~~  284 (704)
                      ++.+|..++.+++.|+...+...+     ..++.+...|+++++.||+.|+.+|.+|...+-.     .-.| .+..++.
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~i-----k~k~~l~~~~l~   70 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMI-----KVKGQLFSRILK   70 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCce-----eehhhhhHHHHH
Confidence            578999999999999874443332     2478899999999999999999999999865321     1123 3477888


Q ss_pred             HhcCCChhHHHHHHHHHHHHhcc
Q 005282          285 LLSSSCSESKREAALLLGQFAAA  307 (704)
Q Consensus       285 ll~~~~~~~~~~a~~~L~~l~~~  307 (704)
                      ++.+++++++..|..++..+...
T Consensus        71 ~l~D~~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   71 LLVDENPEIRSLARSFFSELLKK   93 (178)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHh
Confidence            88999999999999999998754

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.47  E-value=0.035  Score=59.99  Aligned_cols=205  Identities=15%  Similarity=0.108  Sum_probs=144.7

Q ss_pred             CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHH-HhhhcChhhhhhhhccCCcHHHHHHhcCCCHH-
Q 005282          131 VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAIT-NLAHENANIKTRVRVEDGIPPLVELLKFVDVK-  208 (704)
Q Consensus       131 ~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~-~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~-  208 (704)
                      ....-+...++.|+...|+.+......        ........+|. .+......      ....++++...+...... 
T Consensus       492 ~~K~~~~~~Ik~~~~~aLlrl~~~q~e--------~akl~~~~aL~~~i~f~~~~------~~~v~~~~~s~~~~d~~~~  557 (748)
T KOG4151|consen  492 KEKYERAKKIKPGGYEALLRLGQQQFE--------EAKLKWYHALAGKIDFPGER------SYEVVKPLDSALHNDEKGL  557 (748)
T ss_pred             hhHHhcCccccccHHHHHHHHHHHhch--------HHHHHHHHHHhhhcCCCCCc------hhhhhhhhcchhhhhHHHH
Confidence            566667778888999999999887765        55555556666 33221111      123455555555433322 


Q ss_pred             HHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHH-cCCHHHHHHHhc
Q 005282          209 VQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVIL-AGALQPVIGLLS  287 (704)
Q Consensus       209 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~ll~  287 (704)
                      -...++.++.||+..+...++.+...-+++.+-.++..+++..++.++..+.||..+..-....+++ ...++.....+.
T Consensus       558 en~E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e  637 (748)
T KOG4151|consen  558 ENFEALEALTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLE  637 (748)
T ss_pred             HHHHHHHHhhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHH
Confidence            2356888999999878888888888777777777888899999999999999999875555555555 456666666666


Q ss_pred             CCChhHHHHHHHHHHHHhccCCcchH-HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcC
Q 005282          288 SSCSESKREAALLLGQFAAADSNSKV-HIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQD  349 (704)
Q Consensus       288 ~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~  349 (704)
                      .........++.++..++...+..+. ..........+..++.+++.+++......+.|+...
T Consensus       638 ~~~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~  700 (748)
T KOG4151|consen  638 VADEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEA  700 (748)
T ss_pred             hhhhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHH
Confidence            66666677777777766655555555 333357788999999999999999988888885543

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.44  E-value=1.9  Score=47.08  Aligned_cols=272  Identities=17%  Similarity=0.137  Sum_probs=145.8

Q ss_pred             HHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhc
Q 005282          166 GVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLR  245 (704)
Q Consensus       166 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~  245 (704)
                      -+...++.++.++...++..    . ...+..|-.++.++...+|..|.++|..+++..|.... ..    =.-|-.++.
T Consensus       260 mV~~EaArai~~l~~~~~r~----l-~pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~-~c----N~elE~lIt  329 (865)
T KOG1078|consen  260 MVIYEAARAIVSLPNTNSRE----L-APAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVT-VC----NLDLESLIT  329 (865)
T ss_pred             HHHHHHHHHHhhccccCHhh----c-chHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcccc-cc----chhHHhhhc
Confidence            56667777777776433321    1 12677777888888888999999999998874432111 00    112334444


Q ss_pred             CCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHH
Q 005282          246 SEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLI  325 (704)
Q Consensus       246 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~  325 (704)
                      +.+-.+-..|..+|..-  +++.....+++  -+...+.=++++..-+...|..+|+..   .+..     ..+.+..|.
T Consensus       330 d~NrsIat~AITtLLKT--G~e~sv~rLm~--qI~~fv~disDeFKivvvdai~sLc~~---fp~k-----~~~~m~FL~  397 (865)
T KOG1078|consen  330 DSNRSIATLAITTLLKT--GTESSVDRLMK--QISSFVSDISDEFKIVVVDAIRSLCLK---FPRK-----HTVMMNFLS  397 (865)
T ss_pred             ccccchhHHHHHHHHHh--cchhHHHHHHH--HHHHHHHhccccceEEeHHHHHHHHhh---ccHH-----HHHHHHHHH
Confidence            55544544444444332  22222222221  122222222232222334444444432   2222     124567777


Q ss_pred             HhhCC-CCHHHHHHHHHHHHHhhc-CCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcccCCchhhHHHhhCCc
Q 005282          326 EMLQS-PDSQLKEMSAFALGRLAQ-DTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADLVRVGGV  403 (704)
Q Consensus       326 ~ll~~-~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~g~i  403 (704)
                      ++|+. +..+-+.....++..+.. +++.+.     .++..|+..+.+.  +...-+...|.-+..          +|..
T Consensus       398 ~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe-----~~L~~LCefIEDc--e~~~i~~rILhlLG~----------EgP~  460 (865)
T KOG1078|consen  398 NMLREEGGFEFKRAIVDAIIDIIEENPDSKE-----RGLEHLCEFIEDC--EFTQIAVRILHLLGK----------EGPK  460 (865)
T ss_pred             HHHHhccCchHHHHHHHHHHHHHHhCcchhh-----HHHHHHHHHHHhc--cchHHHHHHHHHHhc----------cCCC
Confidence            77764 566777888888887776 333332     3445566665432  222233333333321          1111


Q ss_pred             ccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHHHHHHHHhccC-CCccceeeecCCcHHHHHH
Q 005282          404 QKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCA-PDDCKTIFIDNNGLELLLG  482 (704)
Q Consensus       404 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~l~~~~~i~~L~~  482 (704)
                      ..-                         .+..+..+...+.-.+..++.+|..+|.++.. .+.     ......-.|.+
T Consensus       461 a~~-------------------------Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~-----l~~sI~vllkR  510 (865)
T KOG1078|consen  461 APN-------------------------PSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVV-----LLPSILVLLKR  510 (865)
T ss_pred             CCC-------------------------cchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCC-----ccccHHHHHHH
Confidence            100                         01122233444455778899999999999952 221     22345566778


Q ss_pred             HHhhcchhhhhhHHHHHHHHhhhc
Q 005282          483 LLESTSVKQREESSVALYKLATKA  506 (704)
Q Consensus       483 ll~~~~~~~~~~a~~~L~~L~~~~  506 (704)
                      .+.+.+..+|.+|..+|..+-...
T Consensus       511 c~~D~DdevRdrAtf~l~~l~~~~  534 (865)
T KOG1078|consen  511 CLNDSDDEVRDRATFYLKNLEEKD  534 (865)
T ss_pred             HhcCchHHHHHHHHHHHHHhhhhh
Confidence            888899999999999999887433

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=96.43  E-value=0.67  Score=49.93  Aligned_cols=129  Identities=19%  Similarity=0.222  Sum_probs=87.2

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHH-hcCCChhHHHHHHHHHHHHhccCCcchHHHH
Q 005282          238 PTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGL-LSSSCSESKREAALLLGQFAAADSNSKVHIV  316 (704)
Q Consensus       238 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~l-l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~  316 (704)
                      +.+-+++.+.|+-+|.....+++.--.+.       .+.+++..|+.+ .++.+.++++.|+-+|+-++..+++.     
T Consensus       522 ~lI~el~~dkdpilR~~Gm~t~alAy~GT-------gnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~-----  589 (929)
T KOG2062|consen  522 PLIKELLRDKDPILRYGGMYTLALAYVGT-------GNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ-----  589 (929)
T ss_pred             HHHHHHhcCCchhhhhhhHHHHHHHHhcc-------CchhhHHHhhcccccccchHHHHHHHHHheeeEecChhh-----
Confidence            34455666777777776666554322221       123467777776 56778899999999999888766553     


Q ss_pred             hcCChHHHHHhhC-CCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcc
Q 005282          317 QRGAVRPLIEMLQ-SPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLA  388 (704)
Q Consensus       317 ~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~  388 (704)
                          .+..+.+|. +-++.||..++.+|+-.|.+..++..+      ..|-.+..+...-||..|+-++.-+.
T Consensus       590 ----~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eAi------~lLepl~~D~~~fVRQgAlIa~amIm  652 (929)
T KOG2062|consen  590 ----LPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEAI------NLLEPLTSDPVDFVRQGALIALAMIM  652 (929)
T ss_pred             ----chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHHH------HHHhhhhcChHHHHHHHHHHHHHHHH
Confidence                455666665 568899999999999988887665533      23334455666678888888777664

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.33  E-value=1.5  Score=50.07  Aligned_cols=220  Identities=14%  Similarity=0.093  Sum_probs=131.7

Q ss_pred             HHHHHHHHHHHHhhhcChhhhhhhhc--cCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCc-hhhHHhHhcCChHHHHH
Q 005282          166 GVIRRAADAITNLAHENANIKTRVRV--EDGIPPLVELLKFVDVKVQRAAAGALRTLAFKND-ENKKLIVECNALPTLVL  242 (704)
Q Consensus       166 ~~~~~a~~~L~~l~~~~~~~~~~~~~--~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~~i~~L~~  242 (704)
                      .++..+...|..++.. +........  ..+...|.+-+++.+...+...+.+|..+....+ +....+..  .++-++-
T Consensus       669 ~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k--~I~EvIL  745 (1176)
T KOG1248|consen  669 KVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPK--LIPEVIL  745 (1176)
T ss_pred             HHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHH--HHHHHHH
Confidence            7888888888888864 322221111  1223445555556667788888888888765444 22222222  2444444


Q ss_pred             hhcCCCHHHHHHHHHHHHHHhc--CC--hh-hHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHh
Q 005282          243 MLRSEDASVHFEAVGVIGNLVH--SS--PS-IKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQ  317 (704)
Q Consensus       243 lL~~~~~~v~~~a~~~L~~l~~--~~--~~-~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~  317 (704)
                      .++..+...++.+..+|..+..  ..  +. ......-..++..+...+-..........+.++..+..........-.-
T Consensus       746 ~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l  825 (1176)
T KOG1248|consen  746 SLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETL  825 (1176)
T ss_pred             hcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHH
Confidence            5588889999999999988873  10  00 0001111123333333333333333322245555555433333332333


Q ss_pred             cCChHHHHHhhCCCCHHHHHHHHHHHHHhhcC-CchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcc
Q 005282          318 RGAVRPLIEMLQSPDSQLKEMSAFALGRLAQD-THNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLA  388 (704)
Q Consensus       318 ~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~  388 (704)
                      .++++.+..++.+..++++..|...+..++.. ++..........++.+..++++....++..+...|..|.
T Consensus       826 ~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLi  897 (1176)
T KOG1248|consen  826 EKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLI  897 (1176)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            45677777788899999999999999999865 444444444556788888888888888888888887775

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=96.32  E-value=0.56  Score=51.72  Aligned_cols=319  Identities=13%  Similarity=0.153  Sum_probs=183.6

Q ss_pred             HHHHHHHHhhhccCCchhhHHHHHHHHHHHHHhhcC----hhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHH
Q 005282           46 DIRAQIDILNSKFSSDETDRAAAKTASHALVEFAKN----EEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKE  121 (704)
Q Consensus        46 ~~~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~----~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~  121 (704)
                      ....+..++...+..++...... ++++.+...+..    +.....+     +...+..+..+.+         +-++..
T Consensus       446 ~l~~l~~~~~~~l~~~e~P~Ll~-Ra~~~i~~fs~~~~~~~~~~~~f-----l~~~v~~l~~~~~---------~~~ki~  510 (1005)
T KOG2274|consen  446 KLIELTIMIDNGLVYQESPFLLL-RAFLTISKFSSSTVINPQLLQHF-----LNATVNALTMDVP---------PPVKIS  510 (1005)
T ss_pred             HHHHHHHHHHhhcccccCHHHHH-HHHHHHHHHHhhhccchhHHHHH-----HHHHHHhhccCCC---------CchhHH
Confidence            34444444444444444444444 888888876652    3333332     4555666655544         257888


Q ss_pred             HHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHH
Q 005282          122 CAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVEL  201 (704)
Q Consensus       122 a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l  201 (704)
                      |+++++-.++..-+..  ...+.+..|.++..+..+        ++..-.+.+|+..+.-+++... ..+..+.|..+.+
T Consensus       511 a~~~~~~~~~~~vl~~--~~p~ild~L~qlas~~s~--------evl~llmE~Ls~vv~~dpef~a-s~~skI~P~~i~l  579 (1005)
T KOG2274|consen  511 AVRAFCGYCKVKVLLS--LQPMILDGLLQLASKSSD--------EVLVLLMEALSSVVKLDPEFAA-SMESKICPLTINL  579 (1005)
T ss_pred             HHHHHHhccCceeccc--cchHHHHHHHHHcccccH--------HHHHHHHHHHHHHhccChhhhh-hhhcchhHHHHHH
Confidence            8888877773222111  123455667777766665        8888889999999987776433 5556677776666


Q ss_pred             hc--CCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCC----HHHHHHHHHHHHHHhcCChhhHHHHHH
Q 005282          202 LK--FVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSED----ASVHFEAVGVIGNLVHSSPSIKKEVIL  275 (704)
Q Consensus       202 l~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~----~~v~~~a~~~L~~l~~~~~~~~~~~~~  275 (704)
                      ..  +++|.+...+-.++..++. ...+..-+ ....+|.++..+..++    +.....++..|..+.+..+.-......
T Consensus       580 F~k~s~DP~V~~~~qd~f~el~q-~~~~~g~m-~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~  657 (1005)
T KOG2274|consen  580 FLKYSEDPQVASLAQDLFEELLQ-IAANYGPM-QERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLI  657 (1005)
T ss_pred             HHHhcCCchHHHHHHHHHHHHHH-HHHhhcch-HHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHH
Confidence            54  6788888888888888885 33333323 3346899999998765    567777888888777665443333333


Q ss_pred             cCCHHHHHHHh-cCCChhHHHHHHHHHHHHhccCCcchHHHHhcCC------hHHHHHhhCCCCHHHHHHHHHHHHHhh-
Q 005282          276 AGALQPVIGLL-SSSCSESKREAALLLGQFAAADSNSKVHIVQRGA------VRPLIEMLQSPDSQLKEMSAFALGRLA-  347 (704)
Q Consensus       276 ~~~l~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~------i~~L~~ll~~~~~~v~~~a~~~L~~l~-  347 (704)
                      .-++|++.+.. .+++......+-.+|+.+...+.+....-...++      ++.+-.+|.-   +.-..++..++.+. 
T Consensus       658 ~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLdp---~~sds~a~~VG~lV~  734 (1005)
T KOG2274|consen  658 CYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLDP---ETSDSAAAFVGPLVL  734 (1005)
T ss_pred             HHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcCC---ccchhHHHHHhHHHH
Confidence            34566666554 5667778888888888877644433333322222      3344444432   22222333333332 


Q ss_pred             ---cCCchhhhHHhh--CChHH-HHHhhcCCChhHHHHHHHHHHHccc-CCchhhHH
Q 005282          348 ---QDTHNQAGIAQD--GGILP-LLKLLDSKNGSLQHNAAFALYGLAD-NEDNVADL  397 (704)
Q Consensus       348 ---~~~~~~~~~~~~--~~~~~-L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~l  397 (704)
                         .+..  ..+...  ..+.. +.++.......+......+++.|.. +.+..-.+
T Consensus       735 tLit~a~--~el~~n~d~IL~Avisrmq~ae~lsviQsLi~VfahL~~t~~~~~l~F  789 (1005)
T KOG2274|consen  735 TLITHAS--SELGPNLDQILRAVISRLQQAETLSVIQSLIMVFAHLVHTDLDQLLNF  789 (1005)
T ss_pred             HHHHHHH--HHhchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhCCHHHHHHH
Confidence               2111  011100  11222 3345555677777888888888875 34433333

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.29  E-value=2  Score=48.12  Aligned_cols=260  Identities=13%  Similarity=0.075  Sum_probs=137.3

Q ss_pred             HHHHHHHhhc-C-ChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhh---cChhhhhhhhccCCc
Q 005282          121 ECAFALGLLA-V-KPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAH---ENANIKTRVRVEDGI  195 (704)
Q Consensus       121 ~a~~~L~~l~-~-~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~---~~~~~~~~~~~~~~i  195 (704)
                      .|..++..++ . .++.-     .|.++.+++.+.+....+...+.+.-...|+.++++++.   .....+. ..+.=.+
T Consensus       391 Aa~~~l~~~~~KR~ke~l-----~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~-~mE~flv  464 (1010)
T KOG1991|consen  391 AALDFLTTLVSKRGKETL-----PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKS-QMEYFLV  464 (1010)
T ss_pred             HHHHHHHHHHHhcchhhh-----hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHH-HHHHHHH
Confidence            4555666555 2 23322     356678888887655443333334666778888888872   1222222 3334446


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhc-CCCHHHHHHHHHHHHHHhcCChhhHHHHH
Q 005282          196 PPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLR-SEDASVHFEAVGVIGNLVHSSPSIKKEVI  274 (704)
Q Consensus       196 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  274 (704)
                      +.+...++++.-.+|..|||.+..++.-+=.....+  ..++......|. +.+-.|+..|+-+|..+..+.+.....+.
T Consensus       465 ~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l--~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~  542 (1010)
T KOG1991|consen  465 NHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNL--SEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVS  542 (1010)
T ss_pred             HHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHH--HHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHh
Confidence            677778888989999999999999994121122212  223566677776 77788999999999998877554433222


Q ss_pred             H--cCCHHHHHHHhcCCChhHHHHHHHHH-HHHhccCCcchHHHHhcCChHHHHHhhCC---C---CHHHHHHHHHHHHH
Q 005282          275 L--AGALQPVIGLLSSSCSESKREAALLL-GQFAAADSNSKVHIVQRGAVRPLIEMLQS---P---DSQLKEMSAFALGR  345 (704)
Q Consensus       275 ~--~~~l~~L~~ll~~~~~~~~~~a~~~L-~~l~~~~~~~~~~~~~~~~i~~L~~ll~~---~---~~~v~~~a~~~L~~  345 (704)
                      .  .+.++.|+++.+.-+.+....+...+ ...+..-......+. .++.....+++..   .   +.+=.-.|.+.|..
T Consensus       543 ~hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~-q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~T  621 (1010)
T KOG1991|consen  543 AHVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELC-QNLAETFLKVLQTSEDEDESDDDKAIAASGILRT  621 (1010)
T ss_pred             hhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHH-HHHHHHHHHHHhccCCCCccchHHHHHHHHHHHH
Confidence            2  23455556666555555444444322 222211111111111 2344555555542   1   11222233344433


Q ss_pred             hh---cCCchhhhHH---hhCChHHHHHhhcCCChhHHHHHHHHHHHccc
Q 005282          346 LA---QDTHNQAGIA---QDGGILPLLKLLDSKNGSLQHNAAFALYGLAD  389 (704)
Q Consensus       346 l~---~~~~~~~~~~---~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~  389 (704)
                      +.   ..-++...+.   +...++.+-.++.+.-.++-+.++..+.+++.
T Consensus       622 i~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~  671 (1010)
T KOG1991|consen  622 ISTILLSLENHPEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVSSLTF  671 (1010)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhh
Confidence            33   2222222222   12223333445555556666677766666653

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=96.27  E-value=0.27  Score=46.54  Aligned_cols=228  Identities=11%  Similarity=0.092  Sum_probs=139.4

Q ss_pred             chHHHHHHHHHHHhhc-CChhhHHHHHHc-CCcHHHHHHHhhccCCCCC----cchhHHHHHHHHHHHHhhhcChhhhhh
Q 005282          115 EHEVEKECAFALGLLA-VKPEHQQIIVDT-GALPHLVSLLKQYKNGGNS----RALSGVIRRAADAITNLAHENANIKTR  188 (704)
Q Consensus       115 d~~v~~~a~~~L~~l~-~~~~~~~~~~~~-g~l~~L~~lL~~~~~~~~~----~~~~~~~~~a~~~L~~l~~~~~~~~~~  188 (704)
                      +++.|+.|+.-|+.-- ..++....+... |.+..|++-+-+..+.-..    .....-.-+++..|..++. +++.+..
T Consensus         8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAs-hpetr~~   86 (262)
T PF04078_consen    8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVAS-HPETRMP   86 (262)
T ss_dssp             SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTHHH
T ss_pred             CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHc-ChHHHHH
Confidence            3578888888887777 566666666655 5556666555443211110    0001222334444445554 8889999


Q ss_pred             hhccCCcHHHHHHhcCC-----CHHHHHHHHHHHHHhcc-CCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHH
Q 005282          189 VRVEDGIPPLVELLKFV-----DVKVQRAAAGALRTLAF-KNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNL  262 (704)
Q Consensus       189 ~~~~~~i~~L~~ll~~~-----~~~~~~~a~~~L~~l~~-~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l  262 (704)
                      +.+..+.-.|..+|+..     -+.+|..++++++.+.. ++++....+.+.+++|..++.+..+++-.+..|..++..+
T Consensus        87 Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKI  166 (262)
T PF04078_consen   87 FLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKI  166 (262)
T ss_dssp             HHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred             HHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            99999988899998843     26789999999999986 3446667778899999999999999988899999998888


Q ss_pred             hcCChhhHHHHH--------HcCCHHHHH-HHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHh----hC
Q 005282          263 VHSSPSIKKEVI--------LAGALQPVI-GLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEM----LQ  329 (704)
Q Consensus       263 ~~~~~~~~~~~~--------~~~~l~~L~-~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l----l~  329 (704)
                      ..++.. ...+.        -..++..++ .+...+++.+.+..+++-..++. ++..+..+.. ...+.|-+-    +-
T Consensus       167 L~dd~G-L~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsd-nprar~aL~~-~LP~~Lrd~~f~~~l  243 (262)
T PF04078_consen  167 LLDDVG-LNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSD-NPRAREALRQ-CLPDQLRDGTFSNIL  243 (262)
T ss_dssp             HHSHHH-HHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTT-STTHHHHHHH-HS-GGGTSSTTTTGG
T ss_pred             HcchhH-HHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHcc-CHHHHHHHHH-hCcHHHhcHHHHHHH
Confidence            765322 21111        122344444 34467788888999999888874 5444443322 111111111    11


Q ss_pred             CCCHHHHHHHHHHHHHh
Q 005282          330 SPDSQLKEMSAFALGRL  346 (704)
Q Consensus       330 ~~~~~v~~~a~~~L~~l  346 (704)
                      .+|+.++..-...+.|+
T Consensus       244 ~~D~~~k~~l~qLl~nl  260 (262)
T PF04078_consen  244 KDDPSTKRWLQQLLSNL  260 (262)
T ss_dssp             CS-HHHHHHHHHHHHHT
T ss_pred             hcCHHHHHHHHHHHHHh
Confidence            24677777776666665

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=96.19  E-value=0.036  Score=44.35  Aligned_cols=90  Identities=14%  Similarity=0.216  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHH--cCCHHHHHHHhc
Q 005282          210 QRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVIL--AGALQPVIGLLS  287 (704)
Q Consensus       210 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~l~~L~~ll~  287 (704)
                      |..++.+|...+..-+...... -..+++.++..+.++++.||..|+.+|.|++...   +..+..  ..+++.|.+++.
T Consensus         3 R~ggli~Laa~ai~l~~~~~~~-l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~---~~~~l~~f~~IF~~L~kl~~   78 (97)
T PF12755_consen    3 RKGGLIGLAAVAIALGKDISKY-LDEILPPVLKCFDDQDSRVRYYACEALYNISKVA---RGEILPYFNEIFDALCKLSA   78 (97)
T ss_pred             hhHHHHHHHHHHHHchHhHHHH-HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHc
Confidence            4556777777765433332222 2346889999999999999999999999998542   333332  467788888888


Q ss_pred             CCChhHHHHHHHHHHHH
Q 005282          288 SSCSESKREAALLLGQF  304 (704)
Q Consensus       288 ~~~~~~~~~a~~~L~~l  304 (704)
                      ++++.++..| ..|.++
T Consensus        79 D~d~~Vr~~a-~~Ld~l   94 (97)
T PF12755_consen   79 DPDENVRSAA-ELLDRL   94 (97)
T ss_pred             CCchhHHHHH-HHHHHH
Confidence            8888876554 555554

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=96.16  E-value=0.44  Score=43.53  Aligned_cols=93  Identities=16%  Similarity=0.240  Sum_probs=73.7

Q ss_pred             CHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHh
Q 005282          248 DASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEM  327 (704)
Q Consensus       248 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l  327 (704)
                      ++.+|..++.+++-++...+...+     ..++.+...|.++++.+|..|+.+|..+...+--...    ..++..++..
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k----~~l~~~~l~~   71 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVK----GQLFSRILKL   71 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeeh----hhhhHHHHHH
Confidence            578999999999999866554332     4678999999999999999999999999864321111    1234777888


Q ss_pred             hCCCCHHHHHHHHHHHHHhhcC
Q 005282          328 LQSPDSQLKEMSAFALGRLAQD  349 (704)
Q Consensus       328 l~~~~~~v~~~a~~~L~~l~~~  349 (704)
                      +.+++++++..|...+..+...
T Consensus        72 l~D~~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   72 LVDENPEIRSLARSFFSELLKK   93 (178)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHh
Confidence            8999999999999999999876

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=96.14  E-value=3.1  Score=48.95  Aligned_cols=147  Identities=13%  Similarity=0.170  Sum_probs=94.8

Q ss_pred             HHHHHHHHHHHHhhhccCCchhhHHHHHHHHHHHHHhhc-ChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHH
Q 005282           42 DLVQDIRAQIDILNSKFSSDETDRAAAKTASHALVEFAK-NEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEK  120 (704)
Q Consensus        42 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~  120 (704)
                      .+.......+..++..+.  +....++.+|+++|..+.. +|.+...   ...-..+-.=+.+...          .||+
T Consensus       809 ~f~~sfD~yLk~Il~~l~--e~~ialRtkAlKclS~ive~Dp~vL~~---~dvq~~Vh~R~~Dssa----------sVRE  873 (1692)
T KOG1020|consen  809 SFSQSFDPYLKLILSVLG--ENAIALRTKALKCLSMIVEADPSVLSR---PDVQEAVHGRLNDSSA----------SVRE  873 (1692)
T ss_pred             HHHHhhHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhcChHhhcC---HHHHHHHHHhhccchh----------HHHH
Confidence            344455555666666555  5666789999999999987 4433211   1111222222334433          7999


Q ss_pred             HHHHHHHhhc-CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHH
Q 005282          121 ECAFALGLLA-VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLV  199 (704)
Q Consensus       121 ~a~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~  199 (704)
                      .|+..++... ..++...+..     ..+..-+.+...        .||..+...+..+|...|....      .+..+.
T Consensus       874 AaldLvGrfvl~~~e~~~qyY-----~~i~erIlDtgv--------sVRKRvIKIlrdic~e~pdf~~------i~~~ca  934 (1692)
T KOG1020|consen  874 AALDLVGRFVLSIPELIFQYY-----DQIIERILDTGV--------SVRKRVIKILRDICEETPDFSK------IVDMCA  934 (1692)
T ss_pred             HHHHHHhhhhhccHHHHHHHH-----HHHHhhcCCCch--------hHHHHHHHHHHHHHHhCCChhh------HHHHHH
Confidence            9999999888 7776654443     334444444443        8999999999999987776533      244555


Q ss_pred             HHhc--CCCH-HHHHHHHHHHHHhcc
Q 005282          200 ELLK--FVDV-KVQRAAAGALRTLAF  222 (704)
Q Consensus       200 ~ll~--~~~~-~~~~~a~~~L~~l~~  222 (704)
                      ++++  ++.. .++.-+..++.++..
T Consensus       935 kmlrRv~DEEg~I~kLv~etf~klWF  960 (1692)
T KOG1020|consen  935 KMLRRVNDEEGNIKKLVRETFLKLWF  960 (1692)
T ss_pred             HHHHHhccchhHHHHHHHHHHHHHhc
Confidence            6665  3334 489999999999876

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=96.12  E-value=3  Score=46.30  Aligned_cols=102  Identities=25%  Similarity=0.181  Sum_probs=79.9

Q ss_pred             hHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHH
Q 005282           94 VPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAAD  173 (704)
Q Consensus        94 i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~  173 (704)
                      ++.+..=++++++          .+|..|+++++.+-.. +.-     ..+++++.+++.+.+.        .++..|+.
T Consensus        94 vNti~kDl~d~N~----------~iR~~AlR~ls~l~~~-el~-----~~~~~~ik~~l~d~~a--------yVRk~Aal  149 (757)
T COG5096          94 VNTIQKDLQDPNE----------EIRGFALRTLSLLRVK-ELL-----GNIIDPIKKLLTDPHA--------YVRKTAAL  149 (757)
T ss_pred             HHHHHhhccCCCH----------HHHHHHHHHHHhcChH-HHH-----HHHHHHHHHHccCCcH--------HHHHHHHH
Confidence            5666666777765          9999999998877632 221     2345788888887776        99999999


Q ss_pred             HHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhcc
Q 005282          174 AITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAF  222 (704)
Q Consensus       174 ~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~  222 (704)
                      ++.++..-++   ..+.+.|.+..+..++.+.+|.+..+|+.++..+..
T Consensus       150 av~kly~ld~---~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~  195 (757)
T COG5096         150 AVAKLYRLDK---DLYHELGLIDILKELVADSDPIVIANALASLAEIDP  195 (757)
T ss_pred             HHHHHHhcCH---hhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhch
Confidence            9999986444   346677888999999999999999999999999974

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=96.04  E-value=0.012  Score=48.33  Aligned_cols=71  Identities=18%  Similarity=0.251  Sum_probs=60.9

Q ss_pred             CcHHHHHHhc-CCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhc
Q 005282          194 GIPPLVELLK-FVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVH  264 (704)
Q Consensus       194 ~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~  264 (704)
                      .+..|+.+|. +.++.+...||.=|+.++...|..+..+-+.|+=..++.++.++|++|+..|+.++..+..
T Consensus        44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~  115 (119)
T PF11698_consen   44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV  115 (119)
T ss_dssp             HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            3677889994 5688889999999999999889999999899999999999999999999999999987753

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=96.02  E-value=0.48  Score=48.73  Aligned_cols=272  Identities=15%  Similarity=0.148  Sum_probs=145.2

Q ss_pred             hHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHH
Q 005282           94 VPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAAD  173 (704)
Q Consensus        94 i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~  173 (704)
                      |..+++-+.+..+         ..+|..++--|+.-+.++++|..+..+|.+..+++.+.+..+.       .+...+..
T Consensus        23 v~ylld~l~~~~~---------~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d-------~~~~l~~a   86 (361)
T PF07814_consen   23 VEYLLDGLESSSS---------SSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDD-------DILALATA   86 (361)
T ss_pred             HHHHHhhcccCCC---------ccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccch-------HHHHHHHH
Confidence            4777777774433         3789999888988889999999999999999999999766551       24444444


Q ss_pred             HHHHhhhcChhhhhhhhccCCcHHHHHHhcCC-CHHHHHHH-HHHHHHhccCCchhhHHhHhcCChHHHHHhhc------
Q 005282          174 AITNLAHENANIKTRVRVEDGIPPLVELLKFV-DVKVQRAA-AGALRTLAFKNDENKKLIVECNALPTLVLMLR------  245 (704)
Q Consensus       174 ~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~a-~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~------  245 (704)
                      ++..+...+......+...+....++.++... ...+.... ..-=.+++        .. ....+..+...+.      
T Consensus        87 ~i~~~l~~d~~~~~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~ls--------k~-~~~~~~~~~~~~~~~~~~~  157 (361)
T PF07814_consen   87 AILYVLSRDGLNMHLLLDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNLS--------KV-QQKSRSLCKELLSSGSSWK  157 (361)
T ss_pred             HHHHHHccCCcchhhhhchhHHHHHHHHhccccccccccchhhhhhhhhh--------HH-HHHHHHHHHHHHhcccccc
Confidence            44443322333333344555566667777611 00000000 00000000        00 0001111111110      


Q ss_pred             ---CCCHHHHHHHHHHHHHHh--------------cCChhhHHHHHHcCCHHHHHHHhcC----C-------C-----hh
Q 005282          246 ---SEDASVHFEAVGVIGNLV--------------HSSPSIKKEVILAGALQPVIGLLSS----S-------C-----SE  292 (704)
Q Consensus       246 ---~~~~~v~~~a~~~L~~l~--------------~~~~~~~~~~~~~~~l~~L~~ll~~----~-------~-----~~  292 (704)
                         .....-+..|+.++..++              ...+..++.+...|+++.++.++.+    .       .     ..
T Consensus       158 ~~~~~~lsp~~lall~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~  237 (361)
T PF07814_consen  158 SPKPPELSPQTLALLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLI  237 (361)
T ss_pred             ccCCcccccccHHHHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHH
Confidence               122233445555555442              1223445666777889999988752    1       0     11


Q ss_pred             HHHHHHHHHHHHhccCCcchHHHHhc--CCh-HHHHHhhCC---CCHHHHHHHHHHHHHhhcCC-chhhhHHhhCChH--
Q 005282          293 SKREAALLLGQFAAADSNSKVHIVQR--GAV-RPLIEMLQS---PDSQLKEMSAFALGRLAQDT-HNQAGIAQDGGIL--  363 (704)
Q Consensus       293 ~~~~a~~~L~~l~~~~~~~~~~~~~~--~~i-~~L~~ll~~---~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~--  363 (704)
                      ....+..+|-+.+..+++++..+...  +.+ ..+..++..   ........+++.+.|++-++ ..+..+...+...  
T Consensus       238 ~l~~cl~ILEs~T~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~~  317 (361)
T PF07814_consen  238 DLERCLSILESVTFLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQL  317 (361)
T ss_pred             HHHHHHHHHHHHHhcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccch
Confidence            24457778888887777777766654  223 333333332   23344567888888988664 3333333321111  


Q ss_pred             -HHHHh----hc-------CCChhHHHHHHHHHHHcccC
Q 005282          364 -PLLKL----LD-------SKNGSLQHNAAFALYGLADN  390 (704)
Q Consensus       364 -~L~~l----l~-------~~~~~v~~~a~~~L~~l~~~  390 (704)
                       .+...    ..       ...-+..--++++|.||+..
T Consensus       318 ~~i~~~~~~~~~~~~~~~~~~~~D~~IL~Lg~LINL~E~  356 (361)
T PF07814_consen  318 GLIVTSFFCVLSLPNYVPEESSFDILILALGLLINLVEH  356 (361)
T ss_pred             HHHHHhhcccccccccccccccchHHHHHHHhHHHheee
Confidence             11111    11       12335677888889998863

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=95.96  E-value=0.92  Score=48.96  Aligned_cols=162  Identities=22%  Similarity=0.207  Sum_probs=103.7

Q ss_pred             CCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHh-hcCCCHHHHHHHHHHHHHHhcCChhhHH
Q 005282          193 DGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLM-LRSEDASVHFEAVGVIGNLVHSSPSIKK  271 (704)
Q Consensus       193 ~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l-L~~~~~~v~~~a~~~L~~l~~~~~~~~~  271 (704)
                      ++=+.+-+++.+.+|-+|.....++..--.+..       ..+++..|++. ..+.+.+||+.|+-+|+-++..+++.  
T Consensus       519 ~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTg-------nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~--  589 (929)
T KOG2062|consen  519 DADPLIKELLRDKDPILRYGGMYTLALAYVGTG-------NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ--  589 (929)
T ss_pred             hhHHHHHHHhcCCchhhhhhhHHHHHHHHhccC-------chhhHHHhhcccccccchHHHHHHHHHheeeEecChhh--
Confidence            444566677788888888776655443221111       22356667766 56789999999999999998776653  


Q ss_pred             HHHHcCCHHHHHHHhc-CCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC
Q 005282          272 EVILAGALQPVIGLLS-SSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDT  350 (704)
Q Consensus       272 ~~~~~~~l~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  350 (704)
                             ++..+++|. +-++.+|.-++.+|+-.|.+. ..+.      ++..|-.+..++..-||..|+-+++.+..-.
T Consensus       590 -------~~s~V~lLses~N~HVRyGaA~ALGIaCAGt-G~~e------Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~  655 (929)
T KOG2062|consen  590 -------LPSTVSLLSESYNPHVRYGAAMALGIACAGT-GLKE------AINLLEPLTSDPVDFVRQGALIALAMIMIQQ  655 (929)
T ss_pred             -------chHHHHHHhhhcChhhhhhHHHHHhhhhcCC-CcHH------HHHHHhhhhcChHHHHHHHHHHHHHHHHHhc
Confidence                   556666775 557889999999999877643 3322      3455555556677779998888888766322


Q ss_pred             chhhhHHhhCChHHHHHhhcCCChhHH
Q 005282          351 HNQAGIAQDGGILPLLKLLDSKNGSLQ  377 (704)
Q Consensus       351 ~~~~~~~~~~~~~~L~~ll~~~~~~v~  377 (704)
                      ..+..-.-.++.+.+.+.+.+++.+..
T Consensus       656 t~~~~pkv~~frk~l~kvI~dKhEd~~  682 (929)
T KOG2062|consen  656 TEQLCPKVNGFRKQLEKVINDKHEDGM  682 (929)
T ss_pred             ccccCchHHHHHHHHHHHhhhhhhHHH
Confidence            111111112344556777766555443

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=95.82  E-value=2.8  Score=45.49  Aligned_cols=322  Identities=13%  Similarity=0.082  Sum_probs=167.5

Q ss_pred             HHHHHHHHHHHHhhhcc--CCchhhHHHHHHHHHHHHHhhc--C-hhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCch
Q 005282           42 DLVQDIRAQIDILNSKF--SSDETDRAAAKTASHALVEFAK--N-EEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEH  116 (704)
Q Consensus        42 ~~~~~~~~l~~~l~~~~--~~~~~~~~~~~~a~~~L~~l~~--~-~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~  116 (704)
                      .+...++-++++|.+.-  .++.++.....-|++.+.++..  + +.....+.+.=+++.++..++++-.          
T Consensus       405 TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~yg----------  474 (970)
T COG5656         405 TFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYG----------  474 (970)
T ss_pred             hhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCccc----------
Confidence            34555666677774433  2334667777788888888765  2 2333344455678888888888876          


Q ss_pred             HHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhc--cCC
Q 005282          117 EVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRV--EDG  194 (704)
Q Consensus       117 ~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~~~  194 (704)
                      -++.+||..+..+.  .++.+..+-..+.......+++.+-        .++-.|+.++.-+..+. .....+.+  .+.
T Consensus       475 fL~Srace~is~~e--eDfkd~~ill~aye~t~ncl~nn~l--------pv~ieAalAlq~fi~~~-q~h~k~sahVp~t  543 (970)
T COG5656         475 FLKSRACEFISTIE--EDFKDNGILLEAYENTHNCLKNNHL--------PVMIEAALALQFFIFNE-QSHEKFSAHVPET  543 (970)
T ss_pred             chHHHHHHHHHHHH--HhcccchHHHHHHHHHHHHHhcCCc--------chhhhHHHHHHHHHhch-hhhHHHHhhhhHH
Confidence            79999999999995  3344444444556667777777444        67788888888877533 22222221  233


Q ss_pred             cHHHHHHhcCCCHHHHHHHHHHHH-HhccCCchhhHHhHhcCChHHHH----HhhcCC-C-----HHHHHHHHHHHHHHh
Q 005282          195 IPPLVELLKFVDVKVQRAAAGALR-TLAFKNDENKKLIVECNALPTLV----LMLRSE-D-----ASVHFEAVGVIGNLV  263 (704)
Q Consensus       195 i~~L~~ll~~~~~~~~~~a~~~L~-~l~~~~~~~~~~~~~~~~i~~L~----~lL~~~-~-----~~v~~~a~~~L~~l~  263 (704)
                      ++.|+.+-+.-+.+....+...+. ..+..-......++. ..+..++    .++..+ +     ++-+..|.+.|..+.
T Consensus       544 mekLLsLSn~feiD~LS~vMe~fVe~fseELspfa~eLa~-~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~  622 (970)
T COG5656         544 MEKLLSLSNTFEIDPLSMVMESFVEYFSEELSPFAPELAG-SLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIE  622 (970)
T ss_pred             HHHHHHhcccccchHHHHHHHHHHHHhHHhhchhHHHHHH-HHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHH
Confidence            344444444333333333222221 111100011111111 1122222    233222 1     122334444444332


Q ss_pred             c---C---ChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCH-HHH
Q 005282          264 H---S---SPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDS-QLK  336 (704)
Q Consensus       264 ~---~---~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~-~v~  336 (704)
                      .   +   .+...+ -......|.+--++.+...+...+|+..+.+.+....+--  -+.-|+.+.+.+++.++.. .-.
T Consensus       623 smiLSlen~p~vLk-~le~slypvi~Filkn~i~dfy~Ea~dildg~tf~skeI~--pimwgi~Ell~~~l~~~~t~~y~  699 (970)
T COG5656         623 SMILSLENRPLVLK-YLEVSLYPVISFILKNEISDFYQEALDILDGYTFMSKEIE--PIMWGIFELLLNLLIDEITAVYS  699 (970)
T ss_pred             HHHHhcccchHHHH-HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHHHHhh--hhhhHHHHHHHhcccccchhhhH
Confidence            1   1   111111 1223456666667777777888888888877654222111  2224667777777776653 566


Q ss_pred             HHHHHHHHHhhcCCch---hhhHHhhCChHHHHHhhcCCCh--hHHHHHHHHHHHcc
Q 005282          337 EMSAFALGRLAQDTHN---QAGIAQDGGILPLLKLLDSKNG--SLQHNAAFALYGLA  388 (704)
Q Consensus       337 ~~a~~~L~~l~~~~~~---~~~~~~~~~~~~L~~ll~~~~~--~v~~~a~~~L~~l~  388 (704)
                      +.+.-++.|+.....+   ...+...-........+.+.+.  +-...++..+..+.
T Consensus       700 ee~~~al~nfityG~~ef~~~~~y~~i~~eI~~~~l~sE~n~l~D~~~vc~i~e~l~  756 (970)
T COG5656         700 EEVADALDNFITYGKTEFMDAGIYGSICSEISKLCLCSEENFLEDFIGVCRIIESLI  756 (970)
T ss_pred             HHHHHHHHHHHHhCccccccccchhHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHH
Confidence            7888899998754321   1111111122333344444333  44556666665554

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=95.69  E-value=0.2  Score=47.67  Aligned_cols=98  Identities=19%  Similarity=0.254  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhc-CCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhh
Q 005282          166 GVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLK-FVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLML  244 (704)
Q Consensus       166 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL  244 (704)
                      .....|+..|.-+|--+|+.+..+.....+..++.+|. ...+.++.+++.+|..+..+++.+...+-+.+|+..++.++
T Consensus       106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll  185 (257)
T PF08045_consen  106 SLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL  185 (257)
T ss_pred             HHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence            55677888999999889999999999999999999995 56789999999999999888999999999999999999999


Q ss_pred             cC--CCHHHHHHHHHHHHHHh
Q 005282          245 RS--EDASVHFEAVGVIGNLV  263 (704)
Q Consensus       245 ~~--~~~~v~~~a~~~L~~l~  263 (704)
                      ++  .+.+++..++..|.-..
T Consensus       186 k~~~~~~~~r~K~~EFL~fyl  206 (257)
T PF08045_consen  186 KSKSTDRELRLKCIEFLYFYL  206 (257)
T ss_pred             ccccccHHHhHHHHHHHHHHH
Confidence            85  46678777777765544

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.65  E-value=2.1  Score=46.79  Aligned_cols=236  Identities=15%  Similarity=0.138  Sum_probs=117.6

Q ss_pred             HHHHHHHHHHHhhc-CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCc
Q 005282          117 EVEKECAFALGLLA-VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGI  195 (704)
Q Consensus       117 ~v~~~a~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i  195 (704)
                      -+..+|+.++.++. .++....     .++..|-.+++++..        .++..|...|..++...|..-.     -.=
T Consensus       260 mV~~EaArai~~l~~~~~r~l~-----pavs~Lq~flssp~~--------~lRfaAvRtLnkvAm~~P~~v~-----~cN  321 (865)
T KOG1078|consen  260 MVIYEAARAIVSLPNTNSRELA-----PAVSVLQLFLSSPKV--------ALRFAAVRTLNKVAMKHPQAVT-----VCN  321 (865)
T ss_pred             HHHHHHHHHHhhccccCHhhcc-----hHHHHHHHHhcCcHH--------HHHHHHHHHHHHHHHhCCcccc-----ccc
Confidence            68889999999888 3332211     156677777777765        8999999999999865554211     111


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCH--------------------------
Q 005282          196 PPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDA--------------------------  249 (704)
Q Consensus       196 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~--------------------------  249 (704)
                      .-|-.+..+.+..+-..|...|..-.  ...+...+...  +..++.=+.++..                          
T Consensus       322 ~elE~lItd~NrsIat~AITtLLKTG--~e~sv~rLm~q--I~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~  397 (865)
T KOG1078|consen  322 LDLESLITDSNRSIATLAITTLLKTG--TESSVDRLMKQ--ISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLS  397 (865)
T ss_pred             hhHHhhhcccccchhHHHHHHHHHhc--chhHHHHHHHH--HHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHH
Confidence            22333444444444444444333322  33333333322  2222222222222                          


Q ss_pred             ---------HHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCC
Q 005282          250 ---------SVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGA  320 (704)
Q Consensus       250 ---------~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~  320 (704)
                               +.+.....++..+...++..+.     .++..|...+.+.  +....+.+.|.-+-...+..   ..-.+.
T Consensus       398 ~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe-----~~L~~LCefIEDc--e~~~i~~rILhlLG~EgP~a---~~Psky  467 (865)
T KOG1078|consen  398 NMLREEGGFEFKRAIVDAIIDIIEENPDSKE-----RGLEHLCEFIEDC--EFTQIAVRILHLLGKEGPKA---PNPSKY  467 (865)
T ss_pred             HHHHhccCchHHHHHHHHHHHHHHhCcchhh-----HHHHHHHHHHHhc--cchHHHHHHHHHHhccCCCC---CCcchh
Confidence                     2333333333333322222111     2233333333221  11122222222222111110   001122


Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcc
Q 005282          321 VRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLA  388 (704)
Q Consensus       321 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~  388 (704)
                      +..+...+--.+..++..|..+|.++....+..    .......+.+++.+.+.++|..|...|.++-
T Consensus       468 ir~iyNRviLEn~ivRaaAv~alaKfg~~~~~l----~~sI~vllkRc~~D~DdevRdrAtf~l~~l~  531 (865)
T KOG1078|consen  468 IRFIYNRVILENAIVRAAAVSALAKFGAQDVVL----LPSILVLLKRCLNDSDDEVRDRATFYLKNLE  531 (865)
T ss_pred             hHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCCc----cccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence            333333333455688999999999998443321    1223345678889999999999999999986

>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]

Probab=95.62  E-value=0.042  Score=49.42  Aligned_cols=91  Identities=21%  Similarity=0.264  Sum_probs=69.2

Q ss_pred             cEEEEEcCeEeehhHHHHhhcC--HHHHHhhcCC-C-CCCCCCceEcCCCCHHHHHHHHHHHhcCccc-cChhhHHHHHH
Q 005282          537 DVTFVVEGKQFYAHRICLLASS--DAFRAMFDGG-Y-KEKNAKDVEIPNIRWNVFELMMRFIYTGNVD-VSVDIAQDLLR  611 (704)
Q Consensus       537 d~~~~~~~~~~~~hk~iL~~~s--~~f~~~f~~~-~-~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~-~~~~~~~~ll~  611 (704)
                      =|.+.++|+.|.....-|..+-  +.+.+||.+. | .+.+.+--.+-|-++..|+.+|.|+-.|.+. .+.-++..+++
T Consensus        10 ~vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lIDRsp~yFepIlNyLr~Gq~~~~s~i~~lgvLe   89 (302)
T KOG1665|consen   10 MVRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLIDRSPKYFEPILNYLRDGQIPSLSDIDCLGVLE   89 (302)
T ss_pred             hheeecCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEEccCchhhHHHHHHHhcCceeecCCccHHHHHH
Confidence            4677788888877666666554  3567888763 2 2222333444467899999999999999987 56678999999


Q ss_pred             HHhhhChHhHHHHHHH
Q 005282          612 AADQYLLEGLKRLCEY  627 (704)
Q Consensus       612 ~A~~~~~~~l~~~c~~  627 (704)
                      .|++|++-+|+++.+.
T Consensus        90 eArff~i~sL~~hle~  105 (302)
T KOG1665|consen   90 EARFFQILSLKDHLED  105 (302)
T ss_pred             HhhHHhhHhHHhHHhh
Confidence            9999999999999887

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.45  E-value=0.33  Score=53.14  Aligned_cols=212  Identities=17%  Similarity=0.158  Sum_probs=130.7

Q ss_pred             HHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcH
Q 005282          117 EVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIP  196 (704)
Q Consensus       117 ~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~  196 (704)
                      -++.++++.|..+....+....+...+++...+..|++.+.        -+-.+|...+..+|.-        ....++|
T Consensus       742 pik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~Lkdeds--------yvyLnaI~gv~~Lcev--------y~e~il~  805 (982)
T KOG4653|consen  742 PIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDS--------YVYLNAIRGVVSLCEV--------YPEDILP  805 (982)
T ss_pred             cchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCc--------eeeHHHHHHHHHHHHh--------cchhhHH
Confidence            57888889999998544666667778899999999998776        6777888888888863        3346677


Q ss_pred             HHHH-HhcCC---CHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHH
Q 005282          197 PLVE-LLKFV---DVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKE  272 (704)
Q Consensus       197 ~L~~-ll~~~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~  272 (704)
                      .+.. +.+..   .++.+.....++.++...-.+......+ -.+..++...++++...|..++..++++++........
T Consensus       806 dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd  884 (982)
T KOG4653|consen  806 DLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSD  884 (982)
T ss_pred             HHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhH
Confidence            7777 34321   1344444556666665422222121111 34667778888888888999999999999654322222


Q ss_pred             HHHcCCHHHHHHHhc-CCChhHHHHHHHHHHHHhccCCcchHHHHh---cCChHHHHHhhCC-CCHHHHHHHHHHHHHh
Q 005282          273 VILAGALQPVIGLLS-SSCSESKREAALLLGQFAAADSNSKVHIVQ---RGAVRPLIEMLQS-PDSQLKEMSAFALGRL  346 (704)
Q Consensus       273 ~~~~~~l~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~---~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l  346 (704)
                      .. ..++..++.+.. ++...+|+.|+..+..+..+.......+..   ......+....+. ++..++..++.++-.+
T Consensus       885 ~~-~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei  962 (982)
T KOG4653|consen  885 FF-HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEI  962 (982)
T ss_pred             HH-HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence            11 123444444443 556677999999988887544332222221   1333444444443 4455666666666443

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=95.44  E-value=0.28  Score=46.77  Aligned_cols=99  Identities=15%  Similarity=0.147  Sum_probs=82.4

Q ss_pred             HHHHHHHHHHHhhc-ChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHHHHHcCC
Q 005282           67 AAKTASHALVEFAK-NEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQIIVDTGA  144 (704)
Q Consensus        67 ~~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~~~~g~  144 (704)
                      ...-|+++|.-+.- +|..+..+.+...+..++.+|.....         +.++..++.+|..+. ++|.+.+.+-+.+|
T Consensus       107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~---------~~i~~a~L~tLv~iLld~p~N~r~FE~~~G  177 (257)
T PF08045_consen  107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNP---------PAIQSACLDTLVCILLDSPENQRDFEELNG  177 (257)
T ss_pred             HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCC---------chHHHHHHHHHHHHHHcChHHHHHHHHhCC
Confidence            44556777777666 78998999999999999999955432         489999999998888 99999999999999


Q ss_pred             cHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhh
Q 005282          145 LPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAH  180 (704)
Q Consensus       145 l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~  180 (704)
                      +..++.++++...+      .+++..++..|.-...
T Consensus       178 l~~v~~llk~~~~~------~~~r~K~~EFL~fyl~  207 (257)
T PF08045_consen  178 LSTVCSLLKSKSTD------RELRLKCIEFLYFYLM  207 (257)
T ss_pred             HHHHHHHHcccccc------HHHhHHHHHHHHHHHc
Confidence            99999999987763      3888888888777664

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=95.43  E-value=0.043  Score=45.18  Aligned_cols=71  Identities=25%  Similarity=0.316  Sum_probs=60.7

Q ss_pred             ChHHHHHhhc-CCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhc
Q 005282          236 ALPTLVLMLR-SEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAA  306 (704)
Q Consensus       236 ~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~  306 (704)
                      .+..|+++|. +.|+.+...||.=|+.++...|..+..+-+.|+=..++.++.+++++++.+|+.++..+..
T Consensus        44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~  115 (119)
T PF11698_consen   44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV  115 (119)
T ss_dssp             HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            5788999994 5688889999999999999989988888788999999999999999999999999987753

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=95.27  E-value=2  Score=44.39  Aligned_cols=108  Identities=13%  Similarity=0.192  Sum_probs=85.8

Q ss_pred             HHHHh-CCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcc
Q 005282           86 SLIVD-NGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRA  163 (704)
Q Consensus        86 ~~l~~-~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~  163 (704)
                      +.+++ ......|..+++....       |-+.+...|+.++..+. ..|..-..+.+.|.++.+++.+....-.++   
T Consensus        99 rnl~D~s~L~~sL~~Il~n~~~-------FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s---  168 (379)
T PF06025_consen   99 RNLIDSSSLLSSLKHILENPEV-------FGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPS---  168 (379)
T ss_pred             ccccchhhHHHHHHHHHhCccc-------cchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCc---
Confidence            34456 5556777788888765       66789999999999999 899999999999999999999982222222   


Q ss_pred             hhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCC
Q 005282          164 LSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFV  205 (704)
Q Consensus       164 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~  205 (704)
                       .++....-.+|..+|- |....+.+.+.+.++.+++++.++
T Consensus       169 -~e~l~~lP~~l~AicL-N~~Gl~~~~~~~~l~~~f~if~s~  208 (379)
T PF06025_consen  169 -SEVLTSLPNVLSAICL-NNRGLEKVKSSNPLDKLFEIFTSP  208 (379)
T ss_pred             -HHHHHHHHHHHhHHhc-CHHHHHHHHhcChHHHHHHHhCCH
Confidence             2888888899999996 677778888899999999888753

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=95.22  E-value=5.2  Score=44.61  Aligned_cols=222  Identities=14%  Similarity=0.050  Sum_probs=136.8

Q ss_pred             HHHHHHHHHHHhhcCC-hhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCc
Q 005282          117 EVEKECAFALGLLAVK-PEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGI  195 (704)
Q Consensus       117 ~v~~~a~~~L~~l~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i  195 (704)
                      ....++.+++...+.. +.+.. +.. ..+...+..+.....       +.++..++.+++..|. ...+  .-...+++
T Consensus       465 ~Ll~Ra~~~i~~fs~~~~~~~~-~~~-~fl~~~v~~l~~~~~-------~~~ki~a~~~~~~~~~-~~vl--~~~~p~il  532 (1005)
T KOG2274|consen  465 FLLLRAFLTISKFSSSTVINPQ-LLQ-HFLNATVNALTMDVP-------PPVKISAVRAFCGYCK-VKVL--LSLQPMIL  532 (1005)
T ss_pred             HHHHHHHHHHHHHHhhhccchh-HHH-HHHHHHHHhhccCCC-------CchhHHHHHHHHhccC-ceec--cccchHHH
Confidence            5555888888877722 22111 110 011222222222222       2567777787777773 1111  12345677


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhc--CCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 005282          196 PPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLR--SEDASVHFEAVGVIGNLVHSSPSIKKEV  273 (704)
Q Consensus       196 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~  273 (704)
                      ..|.++....+.++......+|...+.-+++... ..+..+.|.++.+..  +.||.+...+-.++..+++. ..+.. -
T Consensus       533 d~L~qlas~~s~evl~llmE~Ls~vv~~dpef~a-s~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~-~~~~g-~  609 (1005)
T KOG2274|consen  533 DGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAA-SMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQI-AANYG-P  609 (1005)
T ss_pred             HHHHHHcccccHHHHHHHHHHHHHHhccChhhhh-hhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHH-HHhhc-c
Confidence            8888888888889999999999999875554333 334456676666543  67888887787787777752 11111 1


Q ss_pred             HHcCCHHHHHHHhcCCC----hhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhh-CCCCHHHHHHHHHHHHHhhc
Q 005282          274 ILAGALQPVIGLLSSSC----SESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEML-QSPDSQLKEMSAFALGRLAQ  348 (704)
Q Consensus       274 ~~~~~l~~L~~ll~~~~----~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~  348 (704)
                      .....+|.++..+..+.    ......++..|..+....+.-....+-.-++|++.+.. .++|..+...+..+|..+..
T Consensus       610 m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is  689 (1005)
T KOG2274|consen  610 MQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALIS  689 (1005)
T ss_pred             hHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHh
Confidence            23457899999998765    44566666777766665554433333344677777765 45778888889999998887


Q ss_pred             CCchh
Q 005282          349 DTHNQ  353 (704)
Q Consensus       349 ~~~~~  353 (704)
                      ....+
T Consensus       690 ~~~eq  694 (1005)
T KOG2274|consen  690 VTLEQ  694 (1005)
T ss_pred             cCHHH
Confidence            65443

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.18  E-value=2.5  Score=48.47  Aligned_cols=221  Identities=13%  Similarity=0.115  Sum_probs=131.8

Q ss_pred             hHHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCc
Q 005282          116 HEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGI  195 (704)
Q Consensus       116 ~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i  195 (704)
                      ..+|..+.++|..++..+.......+  -+..+.+.|.++......    ..+...+.+|..+....+.--..++...+.
T Consensus       668 ~~vQkK~yrlL~~l~~~~s~~~~~~q--~i~~I~n~L~ds~qs~~~----~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~  741 (1176)
T KOG1248|consen  668 TKVQKKAYRLLEELSSSPSGEGLVEQ--RIDDIFNSLLDSFQSSSS----PAQASRLKCLKRLLKLLSAEHCDLIPKLIP  741 (1176)
T ss_pred             HHHHHHHHHHHHHHhcCCchhhHHHH--HHHHHHHHHHHHHhccch----HHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            48999999999999955544333222  233444444443322211    566777777777765444111122222333


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcC------ChHHHHHhhc----CCCHHHHHHHHHHHHHHhcC
Q 005282          196 PPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECN------ALPTLVLMLR----SEDASVHFEAVGVIGNLVHS  265 (704)
Q Consensus       196 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~------~i~~L~~lL~----~~~~~v~~~a~~~L~~l~~~  265 (704)
                      ..++.+ +..+...++.+..+|..++.     .....+.|      .+..++..+.    .+...+....+-++..+...
T Consensus       742 EvIL~~-Ke~n~~aR~~Af~lL~~i~~-----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e  815 (1176)
T KOG1248|consen  742 EVILSL-KEVNVKARRNAFALLVFIGA-----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQE  815 (1176)
T ss_pred             HHHHhc-ccccHHHHhhHHHHHHHHHH-----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHH
Confidence            344444 77888899999999988872     11111111      2333333333    22333333335555666543


Q ss_pred             ChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHH
Q 005282          266 SPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGR  345 (704)
Q Consensus       266 ~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~  345 (704)
                      .........-.+.+..+..+|.+.+.+++..|+..+..++...++....-....+++.+..+.+.....++..+-..|-.
T Consensus       816 ~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~Llek  895 (1176)
T KOG1248|consen  816 FKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEK  895 (1176)
T ss_pred             HhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            32222222334566677778889999999999999999987777655544445578888888887788888887777776


Q ss_pred             hhc
Q 005282          346 LAQ  348 (704)
Q Consensus       346 l~~  348 (704)
                      |+.
T Consensus       896 Lir  898 (1176)
T KOG1248|consen  896 LIR  898 (1176)
T ss_pred             HHH
Confidence            664

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=95.16  E-value=0.77  Score=50.40  Aligned_cols=159  Identities=18%  Similarity=0.203  Sum_probs=93.1

Q ss_pred             hHhcCChHHHHHhhcC--------CCHHHHHHHHHHHHHHhcCChhhHHHHHHc--------CCHHHHHHHhcC----CC
Q 005282          231 IVECNALPTLVLMLRS--------EDASVHFEAVGVIGNLVHSSPSIKKEVILA--------GALQPVIGLLSS----SC  290 (704)
Q Consensus       231 ~~~~~~i~~L~~lL~~--------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--------~~l~~L~~ll~~----~~  290 (704)
                      +...+++..++.+...        +.-+....|+..|+-+..- |..+..+...        .++..++.....    -+
T Consensus       597 flkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~i-P~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~D  675 (1516)
T KOG1832|consen  597 FLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSI-PDIQKALAHATLSNNRAYDGIAIILDAANGSNSIVD  675 (1516)
T ss_pred             HHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEec-chHHHHHHHHHhhcccccCceEEEeecccccccccC
Confidence            4444556666665542        2245666777777666544 4444444321        134444433321    26


Q ss_pred             hhHHHHHHHHHHHHhccCCcchHHHHhc-C---ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHH
Q 005282          291 SESKREAALLLGQFAAADSNSKVHIVQR-G---AVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLL  366 (704)
Q Consensus       291 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~-~---~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~  366 (704)
                      ++++..|+.+|.|+....++++...+.. |   .-+.. .+=..+.....++...-.|+-..+         +.||..|+
T Consensus       676 pei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~-~l~~~~ks~~le~~l~~mw~~Vr~---------ndGIkiLl  745 (1516)
T KOG1832|consen  676 PEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRI-FLGAGTKSAKLEQVLRQMWEAVRG---------NDGIKILL  745 (1516)
T ss_pred             HHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccc-cccCCCchHHHHHHHHHHHHHHhc---------CccHHHHH
Confidence            8899999999999987666665433211 0   00000 000112233444555555554443         46888999


Q ss_pred             HhhcCCCh-----hHHHHHHHHHHHcccCCchhhHHHhh
Q 005282          367 KLLDSKNG-----SLQHNAAFALYGLADNEDNVADLVRV  400 (704)
Q Consensus       367 ~ll~~~~~-----~v~~~a~~~L~~l~~~~~~~~~l~~~  400 (704)
                      ++++-.+|     .+|.-|+.+|.-|+++++.++.+.+-
T Consensus       746 ~Ll~~k~P~t~aD~IRalAc~~L~GLaR~~tVrQIltKL  784 (1516)
T KOG1832|consen  746 KLLQYKNPPTTADCIRALACRVLLGLARDDTVRQILTKL  784 (1516)
T ss_pred             HHHhccCCCCcHHHHHHHHHHHHhccccCcHHHHHHHhC
Confidence            99976543     58999999999999999988877763

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=95.10  E-value=0.23  Score=44.13  Aligned_cols=148  Identities=20%  Similarity=0.175  Sum_probs=96.3

Q ss_pred             CChHHHHhhccC-CCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHH
Q 005282           92 GAVPALVEHLQT-PPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRR  170 (704)
Q Consensus        92 g~i~~L~~lL~~-~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~  170 (704)
                      ..+..++..|.. ..         ++++|..+.-++..+-  +..++... .-.-..+-..+.....        +-...
T Consensus         3 ~~l~~lL~~L~~~~~---------~~~~r~~a~v~l~k~l--~~~~~~~~-~~~~~~i~~~~~~~~~--------d~~i~   62 (157)
T PF11701_consen    3 DELDTLLTSLDMLRQ---------PEEVRSHALVILSKLL--DAAREEFK-EKISDFIESLLDEGEM--------DSLII   62 (157)
T ss_dssp             CCCCHHHHHHHCTTT---------SCCHHHHHHHHHHHHH--HHHHHHHH-HHHHHHHHHHHCCHHC--------CHHHH
T ss_pred             HHHHHHHHHhcccCC---------CHhHHHHHHHHHHHHH--HHhHHHHH-HHHHHHHHHHHccccc--------hhHHH
Confidence            345556666654 22         2389999999999995  22222221 1122334444444443        45567


Q ss_pred             HHHHHHHhhhcChhhhhhhh-ccCCcHHHHHHhc--CCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhc-C
Q 005282          171 AADAITNLAHENANIKTRVR-VEDGIPPLVELLK--FVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLR-S  246 (704)
Q Consensus       171 a~~~L~~l~~~~~~~~~~~~-~~~~i~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~-~  246 (704)
                      ++.++..+....++....+. ..|.++.++.++.  +.+..++..++.+|..-|. +...|. .+...+++.|-+..+ +
T Consensus        63 ~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~-d~~~r~-~I~~~~~~~L~~~~~~~  140 (157)
T PF11701_consen   63 AFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACI-DKSCRT-FISKNYVSWLKELYKNS  140 (157)
T ss_dssp             HHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTT-SHHHHH-CCHHHCHHHHHHHTTTC
T ss_pred             HHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHc-cHHHHH-HHHHHHHHHHHHHHccc
Confidence            77788888766666655544 5677889999999  8889999999999998884 444444 455557899999995 5


Q ss_pred             CCHH-HHHHHHHHHHH
Q 005282          247 EDAS-VHFEAVGVIGN  261 (704)
Q Consensus       247 ~~~~-v~~~a~~~L~~  261 (704)
                      +++. ++..|+-+|+.
T Consensus       141 ~~~~~ir~~A~v~L~K  156 (157)
T PF11701_consen  141 KDDSEIRVLAAVGLCK  156 (157)
T ss_dssp             C-HH-CHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHhc
Confidence            5566 78888777764

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=95.10  E-value=0.46  Score=52.46  Aligned_cols=185  Identities=15%  Similarity=0.147  Sum_probs=125.2

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHhccCCchh-------------hHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 005282          197 PLVELLKFVDVKVQRAAAGALRTLAFKNDEN-------------KKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLV  263 (704)
Q Consensus       197 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~-------------~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~  263 (704)
                      .++.+|+.  +++-..+..++.-+..+.+..             ++.+. ..++|.++....+.+..++..-+.+|.++.
T Consensus       819 klld~Ls~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF-~~ivP~l~~~~~t~~~~~K~~yl~~LshVl  895 (1030)
T KOG1967|consen  819 KLLDLLSG--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFF-CDIVPILVSKFETAPGSQKHNYLEALSHVL  895 (1030)
T ss_pred             HHHHhcCC--ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHH-HhhHHHHHHHhccCCccchhHHHHHHHHHH
Confidence            45555553  344445555555554433321             22222 246888998888777788888888999888


Q ss_pred             cCChhhHHHHHH--cCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCC---HHHHHH
Q 005282          264 HSSPSIKKEVIL--AGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPD---SQLKEM  338 (704)
Q Consensus       264 ~~~~~~~~~~~~--~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~---~~v~~~  338 (704)
                      .+-|.  +.+..  ...+|.|++.|.-++..++..+..++..+....+.....-+ .-+++.++.+=.+.+   ..+|..
T Consensus       896 ~~vP~--~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~-~Tlvp~lLsls~~~~n~~~~VR~~  972 (1030)
T KOG1967|consen  896 TNVPK--QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHL-STLVPYLLSLSSDNDNNMMVVRED  972 (1030)
T ss_pred             hcCCH--HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHH-hHHHHHHHhcCCCCCcchhHHHHH
Confidence            66554  22332  45788888999999999999999998887754444333221 235677777666544   678999


Q ss_pred             HHHHHHHhhc-CCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHc
Q 005282          339 SAFALGRLAQ-DTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGL  387 (704)
Q Consensus       339 a~~~L~~l~~-~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l  387 (704)
                      |..+|..|.+ -+...-.......+..|.+.|.++..-+|+.|..+=.+.
T Consensus       973 ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W 1022 (1030)
T KOG1967|consen  973 ALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNW 1022 (1030)
T ss_pred             HHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhh
Confidence            9999999998 455444455566778888999988888999998875443

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=95.08  E-value=1.2  Score=44.71  Aligned_cols=182  Identities=21%  Similarity=0.194  Sum_probs=108.8

Q ss_pred             HHHHHHHHHHHHHhhcChhHHHHHH--hCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-C--ChhhHHHH
Q 005282           65 RAAAKTASHALVEFAKNEEIVSLIV--DNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-V--KPEHQQII  139 (704)
Q Consensus        65 ~~~~~~a~~~L~~l~~~~~~~~~l~--~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~--~~~~~~~~  139 (704)
                      ...+..++..+.++....-..+.+.  ...++..+...++.+..          +-+..|+.+++-++ .  .......+
T Consensus        57 ~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~----------~E~~lA~~~l~Ll~ltlg~g~~~~ei  126 (309)
T PF05004_consen   57 SSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKS----------EEQALAARALALLALTLGAGEDSEEI  126 (309)
T ss_pred             HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCH----------HHHHHHHHHHHHHhhhcCCCccHHHH
Confidence            4567888888888765322222222  22457788888888765          55667878777777 2  22333444


Q ss_pred             HHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhh---cChhhhhhhhccCCcHHHHH--Hhc----------C
Q 005282          140 VDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAH---ENANIKTRVRVEDGIPPLVE--LLK----------F  204 (704)
Q Consensus       140 ~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~---~~~~~~~~~~~~~~i~~L~~--ll~----------~  204 (704)
                      + ....|.|.+.+.+....      ...+..|+.+|+-++.   ..+....  .-...+..+..  ..+          .
T Consensus       127 ~-~~~~~~L~~~l~d~s~~------~~~R~~~~~aLai~~fv~~~d~~~~~--~~~~~le~if~~~~~~~~~~~~~~~~~  197 (309)
T PF05004_consen  127 F-EELKPVLKRILTDSSAS------PKARAACLEALAICTFVGGSDEEETE--ELMESLESIFLLSILKSDGNAPVVAAE  197 (309)
T ss_pred             H-HHHHHHHHHHHhCCccc------hHHHHHHHHHHHHHHHhhcCChhHHH--HHHHHHHHHHHHHhcCcCCCcccccCC
Confidence            4 24678888888876542      2566777777777653   1111111  00011221111  111          1


Q ss_pred             CCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcC
Q 005282          205 VDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHS  265 (704)
Q Consensus       205 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~  265 (704)
                      +++.+...|+.+-+-|...-+...-.-.-...++.|..+|.+++.+||..|..+|+-|.+.
T Consensus       198 ~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~  258 (309)
T PF05004_consen  198 DDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYEL  258 (309)
T ss_pred             CccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            2457888888877777654444222222234589999999999999999999999888643

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=95.00  E-value=0.038  Score=33.51  Aligned_cols=29  Identities=24%  Similarity=0.445  Sum_probs=25.6

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhcC
Q 005282          237 LPTLVLMLRSEDASVHFEAVGVIGNLVHS  265 (704)
Q Consensus       237 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~  265 (704)
                      +|.+++++++++++||..|+.+|+.+++.
T Consensus         2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~   30 (31)
T PF02985_consen    2 LPILLQLLNDPSPEVRQAAAECLGAIAEH   30 (31)
T ss_dssp             HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence            68899999999999999999999999753

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=94.90  E-value=1.4  Score=47.52  Aligned_cols=198  Identities=18%  Similarity=0.199  Sum_probs=122.1

Q ss_pred             cCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhh
Q 005282          276 AGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAG  355 (704)
Q Consensus       276 ~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~  355 (704)
                      .+.+..++.-..+++..+|..++..|..+.. ....+...+-.++...+..-+.+..+.||..|..+|+.+-..+.+.. 
T Consensus        84 ~~~f~hlLRg~Eskdk~VRfrvlqila~l~d-~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee-  161 (892)
T KOG2025|consen   84 AGTFYHLLRGTESKDKKVRFRVLQILALLSD-ENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEE-  161 (892)
T ss_pred             HHHHHHHHhcccCcchhHHHHHHHHHHHHhc-cccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCc-
Confidence            3566677777778888999999999998875 33444444456778888888889999999999999999985432211 


Q ss_pred             HHhhCChHHHHHhh-cCCChhHHHHHHHHHHHcccCCchhhHHHhh-----CCcccccccccccccchHHHHHHHHHHHH
Q 005282          356 IAQDGGILPLLKLL-DSKNGSLQHNAAFALYGLADNEDNVADLVRV-----GGVQKLQDGEFTVQPTKDCVARTLKRLEE  429 (704)
Q Consensus       356 ~~~~~~~~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~-----g~i~~l~~~~~~~~~~~~~~~~~~~~~~~  429 (704)
                         ...+..+..++ .+++++||+.|   |.+++-++...+.+++.     |+...++            -...+.+.+.
T Consensus       162 ---~~v~n~l~~liqnDpS~EVRRaa---LsnI~vdnsTlp~IveRarDV~~anRrlv------------Y~r~lpkid~  223 (892)
T KOG2025|consen  162 ---CPVVNLLKDLIQNDPSDEVRRAA---LSNISVDNSTLPCIVERARDVSGANRRLV------------YERCLPKIDL  223 (892)
T ss_pred             ---ccHHHHHHHHHhcCCcHHHHHHH---HHhhccCcccchhHHHHhhhhhHHHHHHH------------HHHhhhhhhh
Confidence               12334556666 45788999876   55666667777666662     2222211            0011111111


Q ss_pred             Hhhc--chhHHHHHHHhhccHHHHHHHHHHHHh--ccCCCccceeeecCCcHHHHHHHHh-hcchhhhhhHHHHHHHH
Q 005282          430 KVHG--RVLNHLLYLLRVADRAVKRRVTLALAH--LCAPDDCKTIFIDNNGLELLLGLLE-STSVKQREESSVALYKL  502 (704)
Q Consensus       430 ~~~~--~~~~~L~~ll~~~~~~v~~~a~~~L~~--l~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~L  502 (704)
                      ...+  ..+..+-.-+.+.+..++.++..+|.+  |        .+. .|-+.-+++-+. +.+.+++..|..+|...
T Consensus       224 r~lsi~krv~LlewgLnDRe~sVk~A~~d~il~~Wl--------~~~-dgni~ElL~~ldvsnss~vavk~lealf~~  292 (892)
T KOG2025|consen  224 RSLSIDKRVLLLEWGLNDREFSVKGALVDAILSGWL--------RFS-DGNILELLERLDVSNSSEVAVKALEALFSG  292 (892)
T ss_pred             hhhhHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHh--------hhc-cccHHHHHHHhccccchHHHHHHHHHHHHH
Confidence            1100  111222333455677888888887764  2        111 345555666665 45568999999999884

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=94.84  E-value=0.86  Score=45.65  Aligned_cols=170  Identities=16%  Similarity=0.154  Sum_probs=114.6

Q ss_pred             CCcHHHH-HHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCh-hhH
Q 005282          193 DGIPPLV-ELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSP-SIK  270 (704)
Q Consensus       193 ~~i~~L~-~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~  270 (704)
                      +.+..|+ ..+++.++.+|+.|+.+|+-+|.-+.+...     ..++.+...+..+++.++..|+.++..+..... ...
T Consensus        26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~  100 (298)
T PF12719_consen   26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIF  100 (298)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhc
Confidence            3344333 677899999999999999999874443222     236677888877899999999999998874322 111


Q ss_pred             HH-------HHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCC----CCHHHHHHH
Q 005282          271 KE-------VILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQS----PDSQLKEMS  339 (704)
Q Consensus       271 ~~-------~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~----~~~~v~~~a  339 (704)
                      ..       ......++.+.+.+.+.+++++..++..++.+.-.+.-.-    ...++..|+-+.-+    ++..++..-
T Consensus       101 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~----~~~vL~~Lll~yF~p~t~~~~~LrQ~L  176 (298)
T PF12719_consen  101 DSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD----PPKVLSRLLLLYFNPSTEDNQRLRQCL  176 (298)
T ss_pred             cchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcCcccCCcHHHHHHH
Confidence            11       1123567788888888899999999999999875443222    12234444444322    356777777


Q ss_pred             HHHHHHhhcCCchhhhHHhhCChHHHHHhhcC
Q 005282          340 AFALGRLAQDTHNQAGIAQDGGILPLLKLLDS  371 (704)
Q Consensus       340 ~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~  371 (704)
                      ...+-..+.........+....++.+..+...
T Consensus       177 ~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~  208 (298)
T PF12719_consen  177 SVFFPVYASSSPENQERLAEAFLPTLRTLSNA  208 (298)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhC
Confidence            77788888776655666667777777666644

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=94.82  E-value=3.6  Score=44.46  Aligned_cols=143  Identities=15%  Similarity=0.077  Sum_probs=88.0

Q ss_pred             HHHHHhhhccCCchhhHHHHHHHHHHHHHhhc-ChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHH
Q 005282           49 AQIDILNSKFSSDETDRAAAKTASHALVEFAK-NEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALG  127 (704)
Q Consensus        49 ~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~  127 (704)
                      ..+..++.+.+..+....+..-..+.+..+-. +++. +  +-.|.+..++....+.+.          .||..++.+|+
T Consensus        44 r~vn~il~vkKresi~dRIl~fla~fv~sl~q~d~e~-D--lV~~~f~hlLRg~Eskdk----------~VRfrvlqila  110 (892)
T KOG2025|consen   44 RVVNYILLVKKRESIPDRILSFLARFVESLPQLDKEE-D--LVAGTFYHLLRGTESKDK----------KVRFRVLQILA  110 (892)
T ss_pred             HHHHHheeeccCCCcHHHHHHHHHHHHHhhhccCchh-h--HHHHHHHHHHhcccCcch----------hHHHHHHHHHH
Confidence            34443333444444444344444444444443 2221 2  234567777777777765          89999999999


Q ss_pred             hhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhc-CCC
Q 005282          128 LLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLK-FVD  206 (704)
Q Consensus       128 ~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~  206 (704)
                      .+.+....++..+-.+....+..-+.+..+        .++.+|+.+|..+-.+ +..    -+..++..+..+++ +++
T Consensus       111 ~l~d~~~eidd~vfn~l~e~l~~Rl~Drep--------~VRiqAv~aLsrlQ~d-~~d----ee~~v~n~l~~liqnDpS  177 (892)
T KOG2025|consen  111 LLSDENAEIDDDVFNKLNEKLLIRLKDREP--------NVRIQAVLALSRLQGD-PKD----EECPVVNLLKDLIQNDPS  177 (892)
T ss_pred             HHhccccccCHHHHHHHHHHHHHHHhccCc--------hHHHHHHHHHHHHhcC-CCC----CcccHHHHHHHHHhcCCc
Confidence            999644333433434555666666666554        8999999999999732 211    11244667778887 678


Q ss_pred             HHHHHHHHHHH
Q 005282          207 VKVQRAAAGAL  217 (704)
Q Consensus       207 ~~~~~~a~~~L  217 (704)
                      +++|+.|+..+
T Consensus       178 ~EVRRaaLsnI  188 (892)
T KOG2025|consen  178 DEVRRAALSNI  188 (892)
T ss_pred             HHHHHHHHHhh
Confidence            99998876644

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=94.82  E-value=0.25  Score=54.49  Aligned_cols=150  Identities=16%  Similarity=0.162  Sum_probs=107.1

Q ss_pred             CCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhH--hcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhH
Q 005282          193 DGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIV--ECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIK  270 (704)
Q Consensus       193 ~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~--~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~  270 (704)
                      .++|.|++.........+..-+.+|.++..+-|.  +.+.  -...+|.|++.|.-+|..++..++.++.-+....+...
T Consensus       867 ~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~--~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~  944 (1030)
T KOG1967|consen  867 DIVPILVSKFETAPGSQKHNYLEALSHVLTNVPK--QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQ  944 (1030)
T ss_pred             hhHHHHHHHhccCCccchhHHHHHHHHHHhcCCH--HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccc
Confidence            5678888888766666777777888888754443  2222  23468888999999999999999999988775543332


Q ss_pred             HHHHHcCCHHHHHHHhcCCC---hhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHH
Q 005282          271 KEVILAGALQPVIGLLSSSC---SESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGR  345 (704)
Q Consensus       271 ~~~~~~~~l~~L~~ll~~~~---~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~  345 (704)
                      ..-+ .-++|.++.+-.+.+   ..+|..|+.+|..+...-|...-......++..|++.|.++...+|+.|..+=.+
T Consensus       945 t~~~-~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~ 1021 (1030)
T KOG1967|consen  945 TEHL-STLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQN 1021 (1030)
T ss_pred             hHHH-hHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhh
Confidence            2111 235677776666555   4568899999999987556555555666789999999999988999998876543

>KOG1566 consensus Conserved protein Mo25 [Function unknown]

Probab=94.82  E-value=3  Score=40.55  Aligned_cols=207  Identities=13%  Similarity=0.137  Sum_probs=146.5

Q ss_pred             hhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchh----hHHhH-hcCChHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 005282          189 VRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDEN----KKLIV-ECNALPTLVLMLRSEDASVHFEAVGVIGNLV  263 (704)
Q Consensus       189 ~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~----~~~~~-~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~  263 (704)
                      +...|.+..++..+...+-+.+..++.+..++-...-..    .+.+. ....+..++.--.. .+++...+..-+....
T Consensus        75 f~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~mlrEci  153 (342)
T KOG1566|consen   75 FYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGNMLRECI  153 (342)
T ss_pred             HHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHHHHHH
Confidence            555788889999999888888888888888886422211    22222 23344444444211 3556555555565555


Q ss_pred             cCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCC----hHHHHHhhCCCCHHHHHHH
Q 005282          264 HSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGA----VRPLIEMLQSPDSQLKEMS  339 (704)
Q Consensus       264 ~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~----i~~L~~ll~~~~~~v~~~a  339 (704)
                      .. +...+.+....-......++..+.-++...|..+...+...+......+...+.    .+.--.++.+++.-++..+
T Consensus       154 rh-e~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs  232 (342)
T KOG1566|consen  154 RH-EFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQS  232 (342)
T ss_pred             hh-HHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHH
Confidence            44 566666777777888888888888899889998888877666555555554433    4446677889999999999


Q ss_pred             HHHHHHhhcCCchhhhHHh----hCChHHHHHhhcCCChhHHHHHHHHHHHcccCCchhhHH
Q 005282          340 AFALGRLAQDTHNQAGIAQ----DGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADL  397 (704)
Q Consensus       340 ~~~L~~l~~~~~~~~~~~~----~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l  397 (704)
                      ..+|+.+-.+.++...+..    ...+..++.+|+++...+|-.|.....-...+|..-+.+
T Consensus       233 ~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpnK~q~V  294 (342)
T KOG1566|consen  233 LKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPNKPQPV  294 (342)
T ss_pred             HHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCCCCchH
Confidence            9999999988777655433    356788899999999999999999998888766544333

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=94.81  E-value=0.11  Score=47.44  Aligned_cols=126  Identities=17%  Similarity=0.170  Sum_probs=86.8

Q ss_pred             CCCHHHHHHHHHHHHHhhcCCchhhhHHhh----------------CChHHHHHhhcC------CChhHHHHHHHHHHHc
Q 005282          330 SPDSQLKEMSAFALGRLAQDTHNQAGIAQD----------------GGILPLLKLLDS------KNGSLQHNAAFALYGL  387 (704)
Q Consensus       330 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~----------------~~~~~L~~ll~~------~~~~v~~~a~~~L~~l  387 (704)
                      ++.......++..|+|++........+.+.                ..+..|++++..      ....-....+.++.|+
T Consensus         6 ~~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~Nl   85 (192)
T PF04063_consen    6 DPKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANL   85 (192)
T ss_pred             CCCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHh
Confidence            344456677888999999877766544322                235566766643      2345667888999999


Q ss_pred             ccCCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHHHHHHHHhccCCCcc
Q 005282          388 ADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPDDC  467 (704)
Q Consensus       388 ~~~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~  467 (704)
                      ++.++.++.++...-...                             .+..|+......+..-+..++.+|.|+|-+...
T Consensus        86 S~~~~gR~~~l~~~~~~~-----------------------------~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~  136 (192)
T PF04063_consen   86 SQLPEGRQFFLDPQRYDG-----------------------------PLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDS  136 (192)
T ss_pred             cCCHHHHHHHhCchhhhh-----------------------------HHHHHHHHhccCcHHHHHHHHHHHHHhhccHhH
Confidence            999999999987432110                             245577777777777788899999999988888


Q ss_pred             ceeeecCCcHHHHHHHH
Q 005282          468 KTIFIDNNGLELLLGLL  484 (704)
Q Consensus       468 ~~~l~~~~~i~~L~~ll  484 (704)
                      +..++..+++..|-.++
T Consensus       137 H~~LL~~~~~~iLp~LL  153 (192)
T PF04063_consen  137 HEWLLSDDEVDILPYLL  153 (192)
T ss_pred             HHHhcCchhhhhHHHHH
Confidence            87777654444444443

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=94.77  E-value=1.4  Score=47.15  Aligned_cols=284  Identities=16%  Similarity=0.114  Sum_probs=139.4

Q ss_pred             HHHHHHHHHHHHhhcC-hhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHHHHHcC
Q 005282           66 AAAKTASHALVEFAKN-EEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQIIVDTG  143 (704)
Q Consensus        66 ~~~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~~~~g  143 (704)
                      ....-|+..+...... |+..+..     +..++.++++.+.          .||.+|++.|-.+| +++++...+.   
T Consensus        37 k~K~Laaq~I~kffk~FP~l~~~A-----i~a~~DLcEDed~----------~iR~~aik~lp~~ck~~~~~v~kva---   98 (556)
T PF05918_consen   37 KEKRLAAQFIPKFFKHFPDLQEEA-----INAQLDLCEDEDV----------QIRKQAIKGLPQLCKDNPEHVSKVA---   98 (556)
T ss_dssp             HHHHHHHHHHHHHHCC-GGGHHHH-----HHHHHHHHT-SSH----------HHHHHHHHHGGGG--T--T-HHHHH---
T ss_pred             HHHHHHHHHHHHHHhhChhhHHHH-----HHHHHHHHhcccH----------HHHHHHHHhHHHHHHhHHHHHhHHH---
Confidence            3566677777777775 7776655     8999999999866          99999999999999 7788877765   


Q ss_pred             CcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhc---CCCHHHHHHHHHHHHHh
Q 005282          144 ALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLK---FVDVKVQRAAAGALRTL  220 (704)
Q Consensus       144 ~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~---~~~~~~~~~a~~~L~~l  220 (704)
                        ..|+++|...+.        .-...+-.+|..+...++.        +.+..++..+.   +++..+|+.++..|..=
T Consensus        99 --DvL~QlL~tdd~--------~E~~~v~~sL~~ll~~d~k--------~tL~~lf~~i~~~~~~de~~Re~~lkFl~~k  160 (556)
T PF05918_consen   99 --DVLVQLLQTDDP--------VELDAVKNSLMSLLKQDPK--------GTLTGLFSQIESSKSGDEQVRERALKFLREK  160 (556)
T ss_dssp             --HHHHHHTT---H--------HHHHHHHHHHHHHHHH-HH--------HHHHHHHHHHH---HS-HHHHHHHHHHHHHH
T ss_pred             --HHHHHHHhcccH--------HHHHHHHHHHHHHHhcCcH--------HHHHHHHHHHHhcccCchHHHHHHHHHHHHH
Confidence              688999987654        4455555666666654443        33455555554   57788999988877644


Q ss_pred             ccCCc--hhh-HHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhc----CChhhHHHHHHcCCHHHHHHHh------c
Q 005282          221 AFKND--ENK-KLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVH----SSPSIKKEVILAGALQPVIGLL------S  287 (704)
Q Consensus       221 ~~~~~--~~~-~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~----~~~~~~~~~~~~~~l~~L~~ll------~  287 (704)
                      ...-+  ... ..=.+.-++..+-+.|.+-..+--.....+|..+-.    ......+.     +++.+....      .
T Consensus       161 l~~l~~~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qe-----Lv~ii~eQa~Ld~~f~  235 (556)
T PF05918_consen  161 LKPLKPELLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQE-----LVDIIEEQADLDQPFD  235 (556)
T ss_dssp             GGGS-TTTS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHH-----HHHHHHHHHTTTS---
T ss_pred             HhhCcHHHhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHH-----HHHHHHHHhccCCCCC
Confidence            32111  011 011112234455566666555555555566666543    11222221     233333322      1


Q ss_pred             CCChhHHHHHHHHHHH-H--hccCCcchH--HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCCh
Q 005282          288 SSCSESKREAALLLGQ-F--AAADSNSKV--HIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGI  362 (704)
Q Consensus       288 ~~~~~~~~~a~~~L~~-l--~~~~~~~~~--~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~  362 (704)
                      ..+++.....+.++.. +  .........  ..+...++|.+-.+    +...+-..+.+++.++.......   ....+
T Consensus       236 ~sD~e~Idrli~C~~~Alp~fs~~v~Sskfv~y~~~kvlP~l~~l----~e~~kl~lLk~lAE~s~~~~~~d---~~~~L  308 (556)
T PF05918_consen  236 PSDPESIDRLISCLRQALPFFSRGVSSSKFVNYMCEKVLPKLSDL----PEDRKLDLLKLLAELSPFCGAQD---ARQLL  308 (556)
T ss_dssp             SSSHHHHHHHHHHHHHHGGG-BTTB--HHHHHHHHHHTCCCTT---------HHHHHHHHHHHHHTT----T---HHHHH
T ss_pred             CcCHHHHHHHHHHHHHhhHHhcCCCChHHHHHHHHHHhcCChhhC----ChHHHHHHHHHHHHHcCCCCccc---HHHHH
Confidence            2233433333333322 1  111111111  12223455544433    44566677888888886543221   11223


Q ss_pred             HHHHHhhc----C--CCh----hHHHHHHHHHHHccc-CCchhhHH
Q 005282          363 LPLLKLLD----S--KNG----SLQHNAAFALYGLAD-NEDNVADL  397 (704)
Q Consensus       363 ~~L~~ll~----~--~~~----~v~~~a~~~L~~l~~-~~~~~~~l  397 (704)
                      +.+..+|.    .  ..+    ...+..+.++.+|+. .|+....+
T Consensus       309 ~~i~~~L~~ymP~~~~~~~l~fs~vEcLL~afh~La~k~p~~~~~l  354 (556)
T PF05918_consen  309 PSIFQLLKKYMPSKKTEPKLQFSYVECLLYAFHQLARKSPNSLNFL  354 (556)
T ss_dssp             HHHHHHHHTTS----------HHHHHHHHHHHHHHHTT-THHHH--
T ss_pred             HHHHHHHHHhCCCCCCCCcccchHhhHHHHHHHHHhhhCcchhhhH
Confidence            44444442    1  223    345566667777775 44434333

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=94.72  E-value=0.34  Score=48.56  Aligned_cols=150  Identities=17%  Similarity=0.146  Sum_probs=99.8

Q ss_pred             HHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCC-cchHH-----
Q 005282          241 VLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADS-NSKVH-----  314 (704)
Q Consensus       241 ~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~~-----  314 (704)
                      ...+++.++.+|+.++.+|+-.+--+.....     ..++.+...+..++.+++..|+.++..+...+. .....     
T Consensus        33 ~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~  107 (298)
T PF12719_consen   33 LPAVQSSDPAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDND  107 (298)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccC
Confidence            3677899999999999999998866543222     346777777777788899999999888764332 11111     


Q ss_pred             --HHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHH-Hhhc---CCChhHHHHHHHHHHHcc
Q 005282          315 --IVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLL-KLLD---SKNGSLQHNAAFALYGLA  388 (704)
Q Consensus       315 --~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~-~ll~---~~~~~v~~~a~~~L~~l~  388 (704)
                        .....+++.+.+.+.+.+++++..|+..++.|........   ....+..|+ ...+   ..+..++..-...+-..+
T Consensus       108 ~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~  184 (298)
T PF12719_consen  108 ESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYA  184 (298)
T ss_pred             ccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHH
Confidence              1224577888888988999999999999999875543222   112223322 2332   245667777777777777


Q ss_pred             cCC-chhhHHH
Q 005282          389 DNE-DNVADLV  398 (704)
Q Consensus       389 ~~~-~~~~~l~  398 (704)
                      ... ++...+.
T Consensus       185 ~s~~~~Q~~l~  195 (298)
T PF12719_consen  185 SSSPENQERLA  195 (298)
T ss_pred             cCCHHHHHHHH
Confidence            644 4444443

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=94.71  E-value=0.23  Score=45.49  Aligned_cols=113  Identities=12%  Similarity=0.107  Sum_probs=80.4

Q ss_pred             cCCCHHHHHHHHHHHHHHhcCChhhHHHHHH----------------cCCHHHHHHHhcC------CChhHHHHHHHHHH
Q 005282          245 RSEDASVHFEAVGVIGNLVHSSPSIKKEVIL----------------AGALQPVIGLLSS------SCSESKREAALLLG  302 (704)
Q Consensus       245 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~----------------~~~l~~L~~ll~~------~~~~~~~~a~~~L~  302 (704)
                      .+++......++.+|+|++..... ...+.+                ...+..|+..+..      ....-....+.++.
T Consensus         5 ~~~~~~~adl~~MLLsNlT~~~~~-~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~   83 (192)
T PF04063_consen    5 TDPKSPLADLACMLLSNLTRSDSG-CEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLA   83 (192)
T ss_pred             cCCCcchHHHHHHHHHHhccchHH-HHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHH
Confidence            345556677888999999876433 332332                1246677766654      23344778899999


Q ss_pred             HHhccCCcchHHHHhc--CC--hHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhh
Q 005282          303 QFAAADSNSKVHIVQR--GA--VRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQD  359 (704)
Q Consensus       303 ~l~~~~~~~~~~~~~~--~~--i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~  359 (704)
                      |++. .++.+..+.+.  +.  +..|+.++.+.+..-|..++.+|.|+|...+....+...
T Consensus        84 NlS~-~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~  143 (192)
T PF04063_consen   84 NLSQ-LPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSD  143 (192)
T ss_pred             HhcC-CHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCc
Confidence            9986 66777777765  34  778888888888878889999999999988877766654

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=94.70  E-value=0.88  Score=48.65  Aligned_cols=165  Identities=18%  Similarity=0.188  Sum_probs=99.2

Q ss_pred             HHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhc
Q 005282          166 GVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLR  245 (704)
Q Consensus       166 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~  245 (704)
                      ....-|+..+......-|...+     .++..+++++.+++..+|..|+..|..+|.++++....++     ..|+++|.
T Consensus        37 k~K~Laaq~I~kffk~FP~l~~-----~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kva-----DvL~QlL~  106 (556)
T PF05918_consen   37 KEKRLAAQFIPKFFKHFPDLQE-----EAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVA-----DVLVQLLQ  106 (556)
T ss_dssp             HHHHHHHHHHHHHHCC-GGGHH-----HHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHH-----HHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhhChhhHH-----HHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHH-----HHHHHHHh
Confidence            7788888888888877776655     5677899999999999999999999999987777766654     67999999


Q ss_pred             CCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhc---CCChhHHHHHHHHHHHHhccCC-cchH--HHHhcC
Q 005282          246 SEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLS---SSCSESKREAALLLGQFAAADS-NSKV--HIVQRG  319 (704)
Q Consensus       246 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~---~~~~~~~~~a~~~L~~l~~~~~-~~~~--~~~~~~  319 (704)
                      ++++.....+=.+|..+...++.        +.+..+...+.   +++..+|+.++..|..-...-+ +...  .=.+.-
T Consensus       107 tdd~~E~~~v~~sL~~ll~~d~k--------~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~  178 (556)
T PF05918_consen  107 TDDPVELDAVKNSLMSLLKQDPK--------GTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEF  178 (556)
T ss_dssp             ---HHHHHHHHHHHHHHHHH-HH--------HHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHhcCcH--------HHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHH
Confidence            99988888888888877755443        23444444443   5567788888877754332111 1111  112222


Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 005282          320 AVRPLIEMLQSPDSQLKEMSAFALGRLAQ  348 (704)
Q Consensus       320 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~  348 (704)
                      ++..+.++|.+-..+--......|..+-.
T Consensus       179 i~~~ikkvL~DVTaeEF~l~m~lL~~lk~  207 (556)
T PF05918_consen  179 IVDEIKKVLQDVTAEEFELFMSLLKSLKI  207 (556)
T ss_dssp             HHHHHHHHCTT--HHHHHHHHHHHHTSGG
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhCcc
Confidence            44555566655333323344555555544

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=94.69  E-value=0.1  Score=38.88  Aligned_cols=67  Identities=13%  Similarity=0.180  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhc-CCChhHHHHHHHHHHHcccCCchhhHHHhhCC
Q 005282          336 KEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLD-SKNGSLQHNAAFALYGLADNEDNVADLVRVGG  402 (704)
Q Consensus       336 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~g~  402 (704)
                      .+.++|++++++..+.....+.+.+.++.++++.. ++...+|..|..+|.-++...+..+.+.+.|.
T Consensus         4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~gW   71 (73)
T PF14668_consen    4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELGW   71 (73)
T ss_pred             HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcCC
Confidence            46789999999998887777777789999999985 56779999999999999999999988887764

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=94.68  E-value=0.72  Score=47.95  Aligned_cols=159  Identities=18%  Similarity=0.219  Sum_probs=120.3

Q ss_pred             HHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHH
Q 005282           95 PALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADA  174 (704)
Q Consensus        95 ~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~  174 (704)
                      ..+.+++.+++.          ..+..|..-|..++.++.+...++...++..|.+++.+......    .++...++.+
T Consensus        86 ~~i~e~l~~~~~----------~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~----~~~L~~~L~a  151 (713)
T KOG2999|consen   86 KRIMEILTEGNN----------ISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMS----SELLSTSLRA  151 (713)
T ss_pred             HHHHHHHhCCCc----------HHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchH----HHHHHHHHHH
Confidence            567888888876          77888999999999999999999999999999999998765322    1777788888


Q ss_pred             HHHhhhcChhhhhhhhccCCcHHHHHHhc--CCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHH
Q 005282          175 ITNLAHENANIKTRVRVEDGIPPLVELLK--FVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVH  252 (704)
Q Consensus       175 L~~l~~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~  252 (704)
                      +..+..+.-.... .+...++.....+.+  ..+..+...|+..|-++..+++..+..+.+.--+..|+..+...+..+.
T Consensus       152 f~elmehgvvsW~-~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~  230 (713)
T KOG2999|consen  152 FSELMEHGVVSWE-SVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQ  230 (713)
T ss_pred             HHHHHhhceeeee-ecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHH
Confidence            8777654332111 122233333334333  3456778899999999998788788888888889999999999999999


Q ss_pred             HHHHHHHHHHhcCChh
Q 005282          253 FEAVGVIGNLVHSSPS  268 (704)
Q Consensus       253 ~~a~~~L~~l~~~~~~  268 (704)
                      ..|...+..+....++
T Consensus       231 ~~aial~nal~~~a~~  246 (713)
T KOG2999|consen  231 TCAIALLNALFRKAPD  246 (713)
T ss_pred             HHHHHHHHHHHhhCCh
Confidence            9988888877755443

>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]

Probab=94.58  E-value=0.16  Score=43.46  Aligned_cols=96  Identities=15%  Similarity=0.183  Sum_probs=74.5

Q ss_pred             ccEEEEEcCeEeehhHHHHhhcCHHH-HHhhcCCCC---CCCCCceEcCCCCHHHHHHHHHHHhcCccccChhhHHHHHH
Q 005282          536 SDVTFVVEGKQFYAHRICLLASSDAF-RAMFDGGYK---EKNAKDVEIPNIRWNVFELMMRFIYTGNVDVSVDIAQDLLR  611 (704)
Q Consensus       536 ~d~~~~~~~~~~~~hk~iL~~~s~~f-~~~f~~~~~---e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~~~~ll~  611 (704)
                      .=|.+-|||+.|-.-|.-|+..+.-| ..+......   ..+..--.+-|=+|..|..+|.|+-.|++.++.-.=..+|+
T Consensus        21 ~wVRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYlIDRDP~~FgpvLNylRhgklvl~~l~eeGvL~  100 (210)
T KOG2715|consen   21 LWVRLNVGGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYLIDRDPFYFGPVLNYLRHGKLVLNKLSEEGVLE  100 (210)
T ss_pred             EEEEEecCCEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceEeccCcchHHHHHHHHhcchhhhhhhhhhccch
Confidence            44777889999999999999888444 555554321   22233445556788999999999999999988866678999


Q ss_pred             HHhhhChHhHHHHHHHHHHh
Q 005282          612 AADQYLLEGLKRLCEYSIAQ  631 (704)
Q Consensus       612 ~A~~~~~~~l~~~c~~~l~~  631 (704)
                      =|++|.++.|.....+.|.+
T Consensus       101 EAefyn~~~li~likd~i~d  120 (210)
T KOG2715|consen  101 EAEFYNDPSLIQLIKDRIQD  120 (210)
T ss_pred             hhhccCChHHHHHHHHHHHH
Confidence            99999999999998888864

>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]

Probab=94.51  E-value=0.15  Score=51.03  Aligned_cols=87  Identities=23%  Similarity=0.297  Sum_probs=68.9

Q ss_pred             cEEEEEcCeEeehhHHHHhhcC--HHHHHhhcCCCCCCCCCc-eEcCCCCHHHHHHHHHHHhcCccccChhhHHHHHH-H
Q 005282          537 DVTFVVEGKQFYAHRICLLASS--DAFRAMFDGGYKEKNAKD-VEIPNIRWNVFELMMRFIYTGNVDVSVDIAQDLLR-A  612 (704)
Q Consensus       537 d~~~~~~~~~~~~hk~iL~~~s--~~f~~~f~~~~~e~~~~~-i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~~~~ll~-~  612 (704)
                      -|.+-|+|+.|...+.-|+-..  .||-+++++.+.-...+. ..+-|=+|+.|..+|.|+-||+++++......++- =
T Consensus        12 ~V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFIDRDPdlFaviLn~LRTg~L~~~g~~~~~llhdE   91 (465)
T KOG2714|consen   12 RVKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFIDRDPDLFAVILNLLRTGDLDASGVFPERLLHDE   91 (465)
T ss_pred             eEEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEecCCchHHHHHHHHHhcCCCCCccCchhhhhhhh
Confidence            4778899999999999987554  699999998876433332 33345689999999999999999996666655555 8


Q ss_pred             HhhhChHhHHH
Q 005282          613 ADQYLLEGLKR  623 (704)
Q Consensus       613 A~~~~~~~l~~  623 (704)
                      |.||++..+.+
T Consensus        92 A~fYGl~~llr  102 (465)
T KOG2714|consen   92 AMFYGLTPLLR  102 (465)
T ss_pred             hhhcCcHHHHH
Confidence            99999998877

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=94.23  E-value=0.22  Score=44.26  Aligned_cols=146  Identities=19%  Similarity=0.226  Sum_probs=96.7

Q ss_pred             CcHHHHHHhc--CCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHH
Q 005282          194 GIPPLVELLK--FVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKK  271 (704)
Q Consensus       194 ~i~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~  271 (704)
                      .+..++..+.  ...+++|..+.-++..+-   +..++...+ -+-+.+-..+...+.+-...++.++..+....++...
T Consensus         4 ~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~~~~~-~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~   79 (157)
T PF11701_consen    4 ELDTLLTSLDMLRQPEEVRSHALVILSKLL---DAAREEFKE-KISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGS   79 (157)
T ss_dssp             CCCHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHHHHHH-HHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHH
T ss_pred             HHHHHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHHHHHH-HHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHH
Confidence            3445555555  356778888888888873   222332222 1223344445554555778888999999888777766


Q ss_pred             HHH-HcCCHHHHHHHhc--CCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCC-CCHH-HHHHHHHHHHH
Q 005282          272 EVI-LAGALQPVIGLLS--SSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQS-PDSQ-LKEMSAFALGR  345 (704)
Q Consensus       272 ~~~-~~~~l~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~-v~~~a~~~L~~  345 (704)
                      .+. ..|+++.++.++.  ..+...+..++.+|..-|.  .+.+...+...+++.|-...+. ++.. ++..|+-.|+.
T Consensus        80 ~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~--d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K  156 (157)
T PF11701_consen   80 ELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACI--DKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK  156 (157)
T ss_dssp             HHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTT--SHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred             HHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHc--cHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence            665 5788899999998  6777778888888877653  3444555666789999999964 5555 77777777664

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=94.22  E-value=0.074  Score=32.22  Aligned_cols=29  Identities=31%  Similarity=0.408  Sum_probs=25.9

Q ss_pred             HHHHHHHHhhcchhhhhhHHHHHHHHhhh
Q 005282          477 LELLLGLLESTSVKQREESSVALYKLATK  505 (704)
Q Consensus       477 i~~L~~ll~~~~~~~~~~a~~~L~~L~~~  505 (704)
                      +|.++++++++++.||..|+.+|..+++.
T Consensus         2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~   30 (31)
T PF02985_consen    2 LPILLQLLNDPSPEVRQAAAECLGAIAEH   30 (31)
T ss_dssp             HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence            68899999999999999999999999874

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=94.20  E-value=0.56  Score=46.95  Aligned_cols=171  Identities=20%  Similarity=0.189  Sum_probs=92.4

Q ss_pred             hhHHHHHHHHHHHHhhhccCCchhhHHHHHHHHHHHHHhhc--C--hhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCc
Q 005282           40 QQDLVQDIRAQIDILNSKFSSDETDRAAAKTASHALVEFAK--N--EEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYE  115 (704)
Q Consensus        40 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~--~--~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d  115 (704)
                      ...+.....++++.+...++....  ..+.-|++++.-++-  +  .+. ..++ ....|.|.+++.+...        .
T Consensus        77 ~d~v~~~~~tL~~~~~k~lkkg~~--~E~~lA~~~l~Ll~ltlg~g~~~-~ei~-~~~~~~L~~~l~d~s~--------~  144 (309)
T PF05004_consen   77 PDFVEDRRETLLDALLKSLKKGKS--EEQALAARALALLALTLGAGEDS-EEIF-EELKPVLKRILTDSSA--------S  144 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCCH--HHHHHHHHHHHHHhhhcCCCccH-HHHH-HHHHHHHHHHHhCCcc--------c
Confidence            344455566677777666643332  123344444443322  1  222 2221 2457899999988765        3


Q ss_pred             hHHHHHHHHHHHhhc--CChhhHHHHHHcCCcHHHHH--HHhhccCC--CCCcchhHHHHHHHHHHHHhhhcChhhhhhh
Q 005282          116 HEVEKECAFALGLLA--VKPEHQQIIVDTGALPHLVS--LLKQYKNG--GNSRALSGVIRRAADAITNLAHENANIKTRV  189 (704)
Q Consensus       116 ~~v~~~a~~~L~~l~--~~~~~~~~~~~~g~l~~L~~--lL~~~~~~--~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  189 (704)
                      +.+|..++.+|+-++  ...+.-...--...+..+..  ..+.....  ....+...+...|+.+.+-|...-+...-.-
T Consensus       145 ~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~  224 (309)
T PF05004_consen  145 PKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLED  224 (309)
T ss_pred             hHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            467777777777766  22221111101112232222  12222110  1112234677788777776664444422222


Q ss_pred             hccCCcHHHHHHhcCCCHHHHHHHHHHHHHhcc
Q 005282          190 RVEDGIPPLVELLKFVDVKVQRAAAGALRTLAF  222 (704)
Q Consensus       190 ~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~  222 (704)
                      .-...++.|..+|.+++.++|..|..+|+-|..
T Consensus       225 ~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E  257 (309)
T PF05004_consen  225 LLEEALPALSELLDSDDVDVRIAAGEAIALLYE  257 (309)
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            234568999999999999999999999988754

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.05  E-value=4.9  Score=41.60  Aligned_cols=232  Identities=16%  Similarity=0.075  Sum_probs=117.5

Q ss_pred             hhhhhhhhhhhhhhccCCC--cccccccCCchhh-HHHHHH-----HHHHHHhhhccCCchhhHHH-HHHHHHHHHHhhc
Q 005282           10 PARRSLKRKLEQDFEEKPD--RKVSIVESGATQQ-DLVQDI-----RAQIDILNSKFSSDETDRAA-AKTASHALVEFAK   80 (704)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~-----~~l~~~l~~~~~~~~~~~~~-~~~a~~~L~~l~~   80 (704)
                      +-+|+..+-+.+...++..  .++++...+.... +..+.+     ..+..++.+..++..+.... +..-...+..+..
T Consensus       167 l~lqsa~e~~~~~sde~~~~w~qls~~~~h~~g~trlqr~m~~~~~~~~~~il~q~~ss~ts~~~~~ritd~Af~ael~~  246 (533)
T KOG2032|consen  167 LILQSAEEAIQAVSDEVSRRWSQLSDNDIHRVGLTRLQRFMACVQDLEMGKILAQLLSSITSEKENGRITDIAFFAELKR  246 (533)
T ss_pred             HHHHHhHHHHHHhhhcccchhhhcccCcccHHHHHHHHHHHHhhCCccHHHHHhhcccccchhcccchHHHHHHHHHHhC
Confidence            4455554444444444433  5566655554332 122222     23445566665443333222 2222233333333


Q ss_pred             ChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHHHHHcCCcHHHHHHHhhccCCC
Q 005282           81 NEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQIIVDTGALPHLVSLLKQYKNGG  159 (704)
Q Consensus        81 ~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~  159 (704)
                      .+...    +.|.+..++..+.....++      +..++..|++.|++.+ .-|+-...-.. -.+..++.-|.++.+. 
T Consensus       247 ~~~l~----~~~lL~s~~~~la~ka~dp------~a~~r~~a~r~L~~~as~~P~kv~th~~-~~ldaii~gL~D~~~~-  314 (533)
T KOG2032|consen  247 PKELD----KTGLLGSVLLSLANKATDP------SAKSRGMACRGLGNTASGAPDKVRTHKT-TQLDAIIRGLYDDLNE-  314 (533)
T ss_pred             ccccc----ccccHHHHHHHHHHhccCc------hhHHHHHHHHHHHHHhccCcHHHHHhHH-HHHHHHHHHHhcCCcc-
Confidence            22221    3455555544443322200      3489999999999999 43543322221 2344555555554431 


Q ss_pred             CCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCc---HHHHHHhcCCCHHHHHHHHHHHHHhccCCchhh-HHhHh--
Q 005282          160 NSRALSGVIRRAADAITNLAHENANIKTRVRVEDGI---PPLVELLKFVDVKVQRAAAGALRTLAFKNDENK-KLIVE--  233 (704)
Q Consensus       160 ~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i---~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~--  233 (704)
                            +++..++.+|..+...-.   ..-+..+.+   -.+..+..+.+++++.++...+..|+.-..... ..+.+  
T Consensus       315 ------~V~leam~~Lt~v~~~~~---~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v  385 (533)
T KOG2032|consen  315 ------EVQLEAMKCLTMVLEKAS---NDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQV  385 (533)
T ss_pred             ------HHHHHHHHHHHHHHHhhh---hcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHH
Confidence                  888889988888874222   112223333   345566778999999999888888764222222 22221  


Q ss_pred             cCChHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 005282          234 CNALPTLVLMLRSEDASVHFEAVGVIGNLV  263 (704)
Q Consensus       234 ~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~  263 (704)
                      .+....++-.+.++++.+.. ||+.....+
T Consensus       386 ~k~~~~lllhl~d~~p~va~-ACr~~~~~c  414 (533)
T KOG2032|consen  386 KKRLAPLLLHLQDPNPYVAR-ACRSELRTC  414 (533)
T ss_pred             HhccccceeeeCCCChHHHH-HHHHHHHhc
Confidence            12233444556677776654 444444443

>KOG1788 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.00  E-value=14  Score=42.08  Aligned_cols=386  Identities=16%  Similarity=0.102  Sum_probs=193.1

Q ss_pred             HHHHHHHHHHHhhc-ChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc---CChhhHHHHHHc
Q 005282           67 AAKTASHALVEFAK-NEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA---VKPEHQQIIVDT  142 (704)
Q Consensus        67 ~~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~---~~~~~~~~~~~~  142 (704)
                      .+.+.+..+..+-. +|++-...-+.--+|.++.-+..-+.          .++...+.+|-.-.   +.-..++     
T Consensus       483 lqaeVlnrmfkIftshpeNYricqelytvpllvlnmegfPs----------slqvkiLkilEyAVtvvncvPeqE-----  547 (2799)
T KOG1788|consen  483 LQAEVLNRMFKIFTSHPENYRICQELYTVPLLVLNMEGFPS----------SLQVKILKILEYAVTVVNCVPEQE-----  547 (2799)
T ss_pred             hhhHHHHHHHHHhccChHHhhHHhhccccchhhhhhcCCCh----------HHHHHHHHHHHHHHhhhccCcHHH-----
Confidence            45667777777754 78886666666778888777777655          56655555543222   1111111     


Q ss_pred             CCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcC------------------
Q 005282          143 GALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKF------------------  204 (704)
Q Consensus       143 g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~------------------  204 (704)
                        +-.|+-+|+.+-.+       .+....+.....+..-+...+..+.+-|.+..|...++.                  
T Consensus       548 --LlSLCvLLqqpIss-------alkhtIlsffvKLIsfDqqyKkvlREVGvLevLqddlkqhkll~gpdqysgvsehyd  618 (2799)
T KOG1788|consen  548 --LLSLCVLLQQPISS-------ALKHTILSFFVKLISFDQQYKKVLREVGVLEVLQDDLKQHKLLRGPDQYSGVSEHYD  618 (2799)
T ss_pred             --HHHHHHHhcchhhH-------HHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhhhccCcchhhhHHHHhh
Confidence              11344444443321       333333344444443344455555556666555544321                  


Q ss_pred             ---------------------------C---CH--HHH---HHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCH
Q 005282          205 ---------------------------V---DV--KVQ---RAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDA  249 (704)
Q Consensus       205 ---------------------------~---~~--~~~---~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~  249 (704)
                                                 +   .+  ++.   ...-.+|..+..++.+++..+.+..++..++.++  -++
T Consensus       619 rnpss~sf~~~ld~~daiisspklmeSgsgklplfevlltitvgwDcLisllKnnteNqklFreanGvklilpfl--ind  696 (2799)
T KOG1788|consen  619 RNPSSPSFKQHLDSQDAIISSPKLMESGSGKLPLFEVLLTITVGWDCLISLLKNNTENQKLFREANGVKLILPFL--IND  696 (2799)
T ss_pred             cCCCCchhhhccccccceeecchhhcccCCccchhhhhhhhhchHHHHHHHHhccchhhHHHHhhcCceEEEEee--ech
Confidence                                       0   00  011   1224466677777888888888888888877777  456


Q ss_pred             HHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCC--------C----hhHHHHHHHHHHHHhccCCcchHHHHh
Q 005282          250 SVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSS--------C----SESKREAALLLGQFAAADSNSKVHIVQ  317 (704)
Q Consensus       250 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~--------~----~~~~~~a~~~L~~l~~~~~~~~~~~~~  317 (704)
                      +-|...++++..+...++...    ...-+-.++..|+++        +    .+.......+++.+..-+...+..+.+
T Consensus       697 ehRSslLrivscLitvdpkqv----hhqelmalVdtLksgmvt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFge  772 (2799)
T KOG1788|consen  697 EHRSSLLRIVSCLITVDPKQV----HHQELMALVDTLKSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGE  772 (2799)
T ss_pred             HHHHHHHHHHHHHhccCcccc----cHHHHHHHHHHHHhcceeccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhc
Confidence            667778888888776555421    112244555555542        1    122344555777776556666677888


Q ss_pred             cCChHHHHHhhCC----------CCHHHHHHHHHHHH-----HhhcCCchhhhHHhhCChHHHHHhhcCCC---hhHHHH
Q 005282          318 RGAVRPLIEMLQS----------PDSQLKEMSAFALG-----RLAQDTHNQAGIAQDGGILPLLKLLDSKN---GSLQHN  379 (704)
Q Consensus       318 ~~~i~~L~~ll~~----------~~~~v~~~a~~~L~-----~l~~~~~~~~~~~~~~~~~~L~~ll~~~~---~~v~~~  379 (704)
                      .++...|...|..          +|.-+-..-...|.     .++.++.++.++...-.-+.+..+|..+.   -+.-+.
T Consensus       773 atGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTlavcenasNrmklhtvITsqtftsLLresgllcvnler~  852 (2799)
T KOG1788|consen  773 ATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLAVCENASNRMKLHTVITSQTFTSLLRESGLLCVNLERH  852 (2799)
T ss_pred             cccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHHHhhcchhhhheeeeeeHHHHHHHHHHhccceecchHH
Confidence            8888777776631          12111111122222     23355666655443333344445543321   111112


Q ss_pred             HHHHHHHcc----cCCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHHHH
Q 005282          380 AAFALYGLA----DNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVT  455 (704)
Q Consensus       380 a~~~L~~l~----~~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~  455 (704)
                      ....|..++    ..+.-..+.....-+..+-+..+......   ......-+..+..+++..++..+-...+..+..-.
T Consensus       853 viqlllElalevlvppfLtSEsaAcaeVfelednifavntPs---Gqfnpdk~~iynagavRvlirslLlnypK~qlefl  929 (2799)
T KOG1788|consen  853 VIQLLLELALEVLVPPFLTSESAACAEVFELEDNIFAVNTPS---GQFNPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFL  929 (2799)
T ss_pred             HHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccceeeeccCC---CCcCchHhhhcccchhHHHHHHHHhhChHHHHHHH
Confidence            222222221    01111111111001111111100000000   00000011123445667777777777888888888


Q ss_pred             HHHHhccCC-CccceeeecCCcHHHHHHHHh
Q 005282          456 LALAHLCAP-DDCKTIFIDNNGLELLLGLLE  485 (704)
Q Consensus       456 ~~L~~l~~~-~~~~~~l~~~~~i~~L~~ll~  485 (704)
                      ..+..+++. +.++..+...|.++.|++.+.
T Consensus       930 ~lleSlaRaspfnaelltS~gcvellleIiy  960 (2799)
T KOG1788|consen  930 NLLESLARASPFNAELLTSAGCVELLLEIIY  960 (2799)
T ss_pred             HHHHHHhhcCCCchhhhhcccHHHHHHHHhh
Confidence            888888774 444444444577888777765

>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]

Probab=93.95  E-value=2.3  Score=42.67  Aligned_cols=106  Identities=10%  Similarity=-0.012  Sum_probs=67.3

Q ss_pred             chHHHHHHHHHHHhhc-CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhh-hhhcc
Q 005282          115 EHEVEKECAFALGLLA-VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKT-RVRVE  192 (704)
Q Consensus       115 d~~v~~~a~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~  192 (704)
                      |..+..+|..+|+|+. .++..++...+...+..+++.+..........   ++.-.-+..|.-+..-....|. .+...
T Consensus       110 d~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~---~~~~~dlrLLflltale~~~Rsql~~~l  186 (532)
T KOG4464|consen  110 DMHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPK---DSSIFDLRLLFLLTALETDHRSQLIAEL  186 (532)
T ss_pred             chHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCc---cchhhHHHHHHHHHHhhHHHHHHHHHHh
Confidence            4589999999999999 89999999999988888888876543211100   2222223333333322333343 45667


Q ss_pred             CCcHHHHHHhcCC---------C---H---HHHHHHHHHHHHhccC
Q 005282          193 DGIPPLVELLKFV---------D---V---KVQRAAAGALRTLAFK  223 (704)
Q Consensus       193 ~~i~~L~~ll~~~---------~---~---~~~~~a~~~L~~l~~~  223 (704)
                      +|++.+.+++.+.         .   |   .....++.++.|+..+
T Consensus       187 ~Gl~~lt~~led~lgidse~n~~~l~pqe~n~a~EaLK~~FNvt~~  232 (532)
T KOG4464|consen  187 LGLELLTNWLEDKLGIDSEINVPPLNPQETNRACEALKVFFNVTCD  232 (532)
T ss_pred             cccHHHHHHhhccccCCCCcCCCCCCHHHHHHHHHHHHHHhheeec
Confidence            8999999998731         1   1   3344566667777653

>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]

Probab=93.95  E-value=3.5  Score=41.52  Aligned_cols=143  Identities=14%  Similarity=0.068  Sum_probs=83.6

Q ss_pred             HHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHh--hccCCCCCcchhHHHHHHH
Q 005282           95 PALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLK--QYKNGGNSRALSGVIRRAA  172 (704)
Q Consensus        95 ~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~--~~~~~~~~~~~~~~~~~a~  172 (704)
                      ..++.+|..+.+         ...+..++..+.-|+.+...-+.+.....++.|+.+-+  ....+.+.-++.++...++
T Consensus        48 e~i~~Vle~~~p---------~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~Esl  118 (532)
T KOG4464|consen   48 ERIFEVLENGEP---------LTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESL  118 (532)
T ss_pred             HHHHHHHhcCCC---------chhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHH
Confidence            445555555542         13444556666666644433332222223344444332  2222233334568999999


Q ss_pred             HHHHHhhhcChhhhhhhhccCCcHHHHHHhcCC-----CHHHHHHHHHHHHHhccCCchhhHH-hHhcCChHHHHHhhcC
Q 005282          173 DAITNLAHENANIKTRVRVEDGIPPLVELLKFV-----DVKVQRAAAGALRTLAFKNDENKKL-IVECNALPTLVLMLRS  246 (704)
Q Consensus       173 ~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-----~~~~~~~a~~~L~~l~~~~~~~~~~-~~~~~~i~~L~~lL~~  246 (704)
                      .+|.|+...++.++....+......+++.+...     -..+...-++.|.-+..-....|.. +.+.++++.+.+.+.+
T Consensus       119 KCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led  198 (532)
T KOG4464|consen  119 KCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLED  198 (532)
T ss_pred             HHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhc
Confidence            999999999999999999988888777766521     1123333344444443333455544 4688899999998873

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=93.91  E-value=1.2  Score=50.11  Aligned_cols=214  Identities=15%  Similarity=0.151  Sum_probs=133.1

Q ss_pred             hhccCCcHHHHHHhcC-----CCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhc----CCC----HHHHHHH
Q 005282          189 VRVEDGIPPLVELLKF-----VDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLR----SED----ASVHFEA  255 (704)
Q Consensus       189 ~~~~~~i~~L~~ll~~-----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~----~~~----~~v~~~a  255 (704)
                      +.+.|++..++.++.+     ....+....+..|..++. -+.+|+.+.+.|+++.|+..+.    .+.    +.+.+..
T Consensus       113 ~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~K-v~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~L  191 (802)
T PF13764_consen  113 LAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCK-VKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQL  191 (802)
T ss_pred             hhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHh-hHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHH
Confidence            3456889999988874     445777788888888886 7999999999999999998775    334    6777777


Q ss_pred             HHHHHHHhcCChhhHH----HHHHc--------CCHHHHHHHhcCC----ChhHHHHHHHHHHHHhccCCcchHHHHhcC
Q 005282          256 VGVIGNLVHSSPSIKK----EVILA--------GALQPVIGLLSSS----CSESKREAALLLGQFAAADSNSKVHIVQRG  319 (704)
Q Consensus       256 ~~~L~~l~~~~~~~~~----~~~~~--------~~l~~L~~ll~~~----~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~  319 (704)
                      +.++..+.........    .....        .-+..++..+.++    ++.+....+++|.+++.++++....+++. 
T Consensus       192 L~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~-  270 (802)
T PF13764_consen  192 LEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH-  270 (802)
T ss_pred             HHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH-
Confidence            7777776643211100    00011        1255666666543    57778888999999998777665555432 


Q ss_pred             ChHHHHHhhC---CCCHHHHHHHHHHHHHhhcCC-------chhhhHHhhCChHHHHHhhcCC--------Chh------
Q 005282          320 AVRPLIEMLQ---SPDSQLKEMSAFALGRLAQDT-------HNQAGIAQDGGILPLLKLLDSK--------NGS------  375 (704)
Q Consensus       320 ~i~~L~~ll~---~~~~~v~~~a~~~L~~l~~~~-------~~~~~~~~~~~~~~L~~ll~~~--------~~~------  375 (704)
                       +.+.+++=+   ....+- ...+..++.++.+-       .-+..+++.|.+...++.+...        +++      
T Consensus       271 -F~p~l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~  348 (802)
T PF13764_consen  271 -FKPYLDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLS  348 (802)
T ss_pred             -HHHhcChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhc
Confidence             122222111   111111 22355666665431       2245678889988888777432        222      


Q ss_pred             --HHHHHHHHHHHcccCCchhhHHHhhCCcccc
Q 005282          376 --LQHNAAFALYGLADNEDNVADLVRVGGVQKL  406 (704)
Q Consensus       376 --v~~~a~~~L~~l~~~~~~~~~l~~~g~i~~l  406 (704)
                        -...++..|.-|+......+.++..++++.+
T Consensus       349 ~psLp~iL~lL~GLa~gh~~tQ~~~~~~~l~~l  381 (802)
T PF13764_consen  349 RPSLPYILRLLRGLARGHEPTQLLIAEQLLPLL  381 (802)
T ss_pred             CCcHHHHHHHHHHHHhcCHHHHHHHHhhHHHHH
Confidence              2346777888888766655566666666544

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.90  E-value=1.5  Score=48.38  Aligned_cols=178  Identities=13%  Similarity=0.115  Sum_probs=112.3

Q ss_pred             HHHHHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHHHHHcC
Q 005282           65 RAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQIIVDTG  143 (704)
Q Consensus        65 ~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~~~~g  143 (704)
                      ..++-.++..|..+....+....+...+++...+..|++.++          .|...|+..+..|| ..|        ..
T Consensus       741 vpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~Lkdeds----------yvyLnaI~gv~~Lcevy~--------e~  802 (982)
T KOG4653|consen  741 VPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDS----------YVYLNAIRGVVSLCEVYP--------ED  802 (982)
T ss_pred             ccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCc----------eeeHHHHHHHHHHHHhcc--------hh
Confidence            346777888888888765555566677899999999999987          78899999888888 333        34


Q ss_pred             CcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccC
Q 005282          144 ALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFK  223 (704)
Q Consensus       144 ~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~  223 (704)
                      .+|.+...-.+.......    +.+...-.++.++...-.+....... -.+...+...++++...|..++..++++|.-
T Consensus       803 il~dL~e~Y~s~k~k~~~----d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~  877 (982)
T KOG4653|consen  803 ILPDLSEEYLSEKKKLQT----DYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQLCQL  877 (982)
T ss_pred             hHHHHHHHHHhcccCCCc----cceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHHHHH
Confidence            667777744433322211    33333335555555322222111111 3345566667777888899999999999862


Q ss_pred             Cchh-hHHhHhcCChHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCh
Q 005282          224 NDEN-KKLIVECNALPTLVLMLR-SEDASVHFEAVGVIGNLVHSSP  267 (704)
Q Consensus       224 ~~~~-~~~~~~~~~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~  267 (704)
                      .... ...+.  .++..++.+.+ ++..-+|+.|+..+..+..+..
T Consensus       878 ~a~~vsd~~~--ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg  921 (982)
T KOG4653|consen  878 LAFQVSDFFH--EVLQLILSLETTDGSVLVRRAAVHLLAELLNGTG  921 (982)
T ss_pred             HhhhhhHHHH--HHHHHHHHHHccCCchhhHHHHHHHHHHHHhccc
Confidence            2211 11111  12444555554 5678899999999999886543

>KOG1778 consensus CREB binding protein/P300 and related TAZ Zn-finger proteins [Transcription]

Probab=93.86  E-value=0.049  Score=53.61  Aligned_cols=139  Identities=17%  Similarity=0.259  Sum_probs=109.6

Q ss_pred             cEEEEEcCeEeehhHHHHhhcCHHHHHhhcCCCCCCCCCceEcCCCCHHHHHHHHHHHhcCccccCh--hhHHHHHHHHh
Q 005282          537 DVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFIYTGNVDVSV--DIAQDLLRAAD  614 (704)
Q Consensus       537 d~~~~~~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~--~~~~~ll~~A~  614 (704)
                      +..+..+...+++|+.+|...|+.|..+....-..+..+.+....++...+..+.+|+|.. .+--+  .....++.+..
T Consensus        28 ~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~~-~ek~e~~~~~ihll~~~~  106 (319)
T KOG1778|consen   28 VEIVTDVKDLIPAHSLVLGPASPVFKKVLKQPCRKSLVKGNKILGVPCKAVNVFIRFLYSS-LEKHEMVFFDIHLLALSH  106 (319)
T ss_pred             hhhhhhhhhhhHHHHhcccccchHHHHHHhhhcchhhhhcceeecccccccchhhhhhccc-hhhhHHHHHHHHHHhhhh
Confidence            3444445678999999999999999887765533333456666778888999999999988 33222  24567778878


Q ss_pred             hhChHhHHHHHHHHHHh-hCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCChhhhc
Q 005282          615 QYLLEGLKRLCEYSIAQ-IISVENIMLMYELSEAYNATTLKQSCILFILEKFDKMRNKPWFFR  676 (704)
Q Consensus       615 ~~~~~~l~~~c~~~l~~-~~~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~  676 (704)
                      .|.++..+..|...+.. .++..+++..+..+..|..+.|...+.+.+...|...+.++.+..
T Consensus       107 ~~~v~~~~~d~~~~~~~~~~~~r~~flvl~~~~~~~~~~lr~a~hss~~~~~~~H~~t~~~~~  169 (319)
T KOG1778|consen  107 VYVVPQPKADCDPILECGLFDKRNVFLVLQLAEHCDFSDLRRAKHSSIMLLFDLHLQTEKWFA  169 (319)
T ss_pred             hhhccCccccCCccccchhhhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcccCcee
Confidence            99999999998877754 778889999999999999999999999999999999988665543

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=93.75  E-value=0.32  Score=36.28  Aligned_cols=67  Identities=21%  Similarity=0.361  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHcC
Q 005282           68 AKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTG  143 (704)
Q Consensus        68 ~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g  143 (704)
                      .+.++|++.+++..+.-...+-+.++++.++++....+.         ..+|-.|.++|+-++.+.+..+.+.+.|
T Consensus         4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v---------~siRGT~fy~Lglis~T~~G~~~L~~~g   70 (73)
T PF14668_consen    4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPV---------LSIRGTCFYVLGLISSTEEGAEILDELG   70 (73)
T ss_pred             HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCc---------cchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence            577899999999988777777778999999999998765         4799999999999999988888877665

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=93.65  E-value=0.61  Score=50.18  Aligned_cols=188  Identities=15%  Similarity=0.154  Sum_probs=130.5

Q ss_pred             hccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhh
Q 005282          190 RVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSI  269 (704)
Q Consensus       190 ~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~  269 (704)
                      ...+++|.|+++++..|..+|..-+.-+-+...   .....+.+..++|.+...+.+.++.+|+.++.++..++..   .
T Consensus       327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~---~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~k---L  400 (690)
T KOG1243|consen  327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYID---HLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPK---L  400 (690)
T ss_pred             cccchhhhHHHHhcCcchHHHHHHHHhHHHHhh---hcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhh---h
Confidence            566889999999999999999877776666553   3344566777899999999999999999999999998832   2


Q ss_pred             HHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcC
Q 005282          270 KKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQD  349 (704)
Q Consensus       270 ~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~  349 (704)
                      .........+..+-.+-.+.+..++.+..-+|+.++......   ..+.-.+..+.+.++++-...|..+.++++.....
T Consensus       401 ~~~~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~---~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~  477 (690)
T KOG1243|consen  401 SKRNLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAAS---VRKRVLASAFTRALKDPFVPARKAGVLALAATQEY  477 (690)
T ss_pred             chhhhcHHHHHHHHhhCccccCcccccceeeecccccccchh---hhccccchhhhhhhcCCCCCchhhhhHHHhhcccc
Confidence            222333344555555555666778888888888876432221   12223455566667777777888888888776654


Q ss_pred             CchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcc
Q 005282          350 THNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLA  388 (704)
Q Consensus       350 ~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~  388 (704)
                      .+..  -+....++.++-+.-+.+..++..|..++...-
T Consensus       478 ~~~~--~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl  514 (690)
T KOG1243|consen  478 FDQS--EVANKILPSLVPLTVDPEKTVRDTAEKAIRQFL  514 (690)
T ss_pred             cchh--hhhhhccccccccccCcccchhhHHHHHHHHHH
Confidence            4322  133345566777777778888888888776654

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=93.43  E-value=0.62  Score=52.97  Aligned_cols=162  Identities=17%  Similarity=0.138  Sum_probs=116.8

Q ss_pred             cHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhc-CCCHHHHHHHHHHHHHhccC
Q 005282          145 LPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLK-FVDVKVQRAAAGALRTLAFK  223 (704)
Q Consensus       145 l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~  223 (704)
                      .|.++...+.+...+    +++++..|.-+|+.++--+.+...     .-+|.|+..+. +++|.+|.++.-+++.++..
T Consensus       921 ~piv~e~c~n~~~~s----dp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp~p~IRsN~VvalgDlav~  991 (1251)
T KOG0414|consen  921 APIVVEGCRNPGLFS----DPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVR  991 (1251)
T ss_pred             HHHHHHHhcCCCcCC----CHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCCCceeeecchheccchhhh
Confidence            445555554433222    358999999999998754443322     45788999998 89999999999999999864


Q ss_pred             CchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHH
Q 005282          224 NDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQ  303 (704)
Q Consensus       224 ~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~  303 (704)
                      .|...+.     .-+.|..-|++.++.+|+.|+..|.+|...+     .+.-.|.+.-+..++.+++.+++..|=...-.
T Consensus       992 fpnlie~-----~T~~Ly~rL~D~~~~vRkta~lvlshLILnd-----miKVKGql~eMA~cl~D~~~~IsdlAk~FF~E 1061 (1251)
T KOG0414|consen  992 FPNLIEP-----WTEHLYRRLRDESPSVRKTALLVLSHLILND-----MIKVKGQLSEMALCLEDPNAEISDLAKSFFKE 1061 (1251)
T ss_pred             cccccch-----hhHHHHHHhcCccHHHHHHHHHHHHHHHHhh-----hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence            4433332     3456888889999999999999999997542     33447899999999999999988877777777


Q ss_pred             HhccCCcchHHHHhcCChHHHHHhhCCC
Q 005282          304 FAAADSNSKVHIVQRGAVRPLIEMLQSP  331 (704)
Q Consensus       304 l~~~~~~~~~~~~~~~~i~~L~~ll~~~  331 (704)
                      ++...  +.  +  .+++|-++.-|.++
T Consensus      1062 ls~k~--n~--i--ynlLPdil~~Ls~~ 1083 (1251)
T KOG0414|consen 1062 LSSKG--NT--I--YNLLPDILSRLSNG 1083 (1251)
T ss_pred             hhhcc--cc--h--hhhchHHHHhhccC
Confidence            76432  11  1  34667777777665

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=93.42  E-value=21  Score=42.55  Aligned_cols=140  Identities=16%  Similarity=0.222  Sum_probs=98.5

Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHH
Q 005282          236 ALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHI  315 (704)
Q Consensus       236 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  315 (704)
                      .+..++..++.+...+|..|++||.++.+.++...   ....+-..+-.-+.+....||..|+..++......++.....
T Consensus       817 yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL---~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~qy  893 (1692)
T KOG1020|consen  817 YLKLILSVLGENAIALRTKALKCLSMIVEADPSVL---SRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQY  893 (1692)
T ss_pred             HHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhh---cCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHHH
Confidence            57788888998899999999999999998766432   223334444555667778899999999998876666554433


Q ss_pred             HhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhh---cCCChhHHHHHHHHHHHcc
Q 005282          316 VQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLL---DSKNGSLQHNAAFALYGLA  388 (704)
Q Consensus       316 ~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll---~~~~~~v~~~a~~~L~~l~  388 (704)
                           ...+..-..+....||+.+...+..+|...++-..+.     ....+++   ++....+++-+..++.++=
T Consensus       894 -----Y~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~-----~~cakmlrRv~DEEg~I~kLv~etf~klW  959 (1692)
T KOG1020|consen  894 -----YDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIV-----DMCAKMLRRVNDEEGNIKKLVRETFLKLW  959 (1692)
T ss_pred             -----HHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHH-----HHHHHHHHHhccchhHHHHHHHHHHHHHh
Confidence                 4556666677888999999999999997766544333     2233333   3344447777777776663

>KOG1566 consensus Conserved protein Mo25 [Function unknown]

Probab=93.22  E-value=8.9  Score=37.42  Aligned_cols=204  Identities=14%  Similarity=0.192  Sum_probs=142.9

Q ss_pred             HHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhh----h-hhccCCcHHHHHHhcCCCHHHHH
Q 005282          137 QIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKT----R-VRVEDGIPPLVELLKFVDVKVQR  211 (704)
Q Consensus       137 ~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~----~-~~~~~~i~~L~~ll~~~~~~~~~  211 (704)
                      ..+.++|.++.+++.+.+-.-        +-+..++....++-.-....+.    . ......+..|+.--.. .+++..
T Consensus        73 qef~~~~~l~~lI~~l~~l~f--------E~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL  143 (342)
T KOG1566|consen   73 QEFYNADVLSLLIQHLPKLEF--------ESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIAL  143 (342)
T ss_pred             HHHHhCCchHHHHHhhhcccc--------hhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHH
Confidence            566778999999999987765        6677777777777532222221    1 1112333444443111 477777


Q ss_pred             HHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCC----HHHHHHHhc
Q 005282          212 AAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGA----LQPVIGLLS  287 (704)
Q Consensus       212 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~----l~~L~~ll~  287 (704)
                      ++...+..+.. .+...+.+....-......++..++-++...|..+...+..........+.....    .+.--.++.
T Consensus       144 ~cg~mlrEcir-he~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~  222 (342)
T KOG1566|consen  144 TCGNMLRECIR-HEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLR  222 (342)
T ss_pred             HHHHHHHHHHh-hHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhc
Confidence            77777777775 5666677777777888888888888899999999998887665555555554332    444667888


Q ss_pred             CCChhHHHHHHHHHHHHhccCCcchHHHHh----cCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCc
Q 005282          288 SSCSESKREAALLLGQFAAADSNSKVHIVQ----RGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTH  351 (704)
Q Consensus       288 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~----~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  351 (704)
                      +.+--+++.+..+++.+.. +..+...+..    ..-+..++.+|+.++..+|-.|....+-...++.
T Consensus       223 s~Nyvtkrqs~kllg~lll-dr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpn  289 (342)
T KOG1566|consen  223 SENYVTKRQSLKLLGELLL-DRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPN  289 (342)
T ss_pred             ccceehHHHHHHhHHHHHh-CCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCC
Confidence            9888899999999999875 3333333322    3568899999999999999999999888887654

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=93.09  E-value=6.8  Score=41.27  Aligned_cols=155  Identities=17%  Similarity=0.134  Sum_probs=99.8

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHh-hcCCCHHHHHHHHHHHHHHhcCChhhHHHHHH
Q 005282          197 PLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLM-LRSEDASVHFEAVGVIGNLVHSSPSIKKEVIL  275 (704)
Q Consensus       197 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l-L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~  275 (704)
                      .+-+++.+.++-+|.....+++.--.+.       -..+++..+++. ..+.+.+||+.|+-+|+-+|..++.       
T Consensus       520 ~I~ell~d~ds~lRy~G~fs~alAy~GT-------gn~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~-------  585 (926)
T COG5116         520 YINELLYDKDSILRYNGVFSLALAYVGT-------GNLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD-------  585 (926)
T ss_pred             HHHHHhcCchHHhhhccHHHHHHHHhcC-------CcchhHhhhheeecccCchHHHHHHHHheeeeEecCcc-------
Confidence            4566777778777776665544332111       134567777776 6688999999999999998866543       


Q ss_pred             cCCHHHHHHHhc-CCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhh
Q 005282          276 AGALQPVIGLLS-SSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQA  354 (704)
Q Consensus       276 ~~~l~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~  354 (704)
                        .+...+++|. +-+..+|.-.+.+|+-.|.+...+       -++..|-.++.+...-+|..|+-+++.+......+-
T Consensus       586 --~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~-------~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~L  656 (926)
T COG5116         586 --LLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK-------VATDILEALMYDTNDFVRQSAMIAVGMILMQCNPEL  656 (926)
T ss_pred             --hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH-------HHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCccc
Confidence              4556666665 456778888888888777643332       245667777788888899999999888763222111


Q ss_pred             hHHhhCChHHHHHhhcCCCh
Q 005282          355 GIAQDGGILPLLKLLDSKNG  374 (704)
Q Consensus       355 ~~~~~~~~~~L~~ll~~~~~  374 (704)
                      .---.+..+.+.+++.++..
T Consensus       657 np~v~~I~k~f~~vI~~Khe  676 (926)
T COG5116         657 NPNVKRIIKKFNRVIVDKHE  676 (926)
T ss_pred             ChhHHHHHHHHHHHHhhhhH
Confidence            11112344556666655443

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=93.06  E-value=1.4  Score=50.35  Aligned_cols=163  Identities=21%  Similarity=0.250  Sum_probs=120.8

Q ss_pred             ChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHH
Q 005282           93 AVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRA  171 (704)
Q Consensus        93 ~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a  171 (704)
                      +.|.++++...+..      +-||+++..|.-+|+.+. -+.++.     ...+|.|+..+...+.       +-++.++
T Consensus       920 f~piv~e~c~n~~~------~sdp~Lq~AAtLaL~klM~iSa~fc-----es~l~llftimeksp~-------p~IRsN~  981 (1251)
T KOG0414|consen  920 FAPIVVEGCRNPGL------FSDPELQAAATLALGKLMCISAEFC-----ESHLPLLFTIMEKSPS-------PRIRSNL  981 (1251)
T ss_pred             HHHHHHHHhcCCCc------CCCHHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhcCCC-------ceeeecc
Confidence            46777777766543      236799999999999998 554443     3356899999986654       3788899


Q ss_pred             HHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHH
Q 005282          172 ADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASV  251 (704)
Q Consensus       172 ~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v  251 (704)
                      +-+++.++..-|..-     ...-+.|...|.+.++.+|+.|+.+|..|..     ..++.-.|.++.+..++.++++.+
T Consensus       982 VvalgDlav~fpnli-----e~~T~~Ly~rL~D~~~~vRkta~lvlshLIL-----ndmiKVKGql~eMA~cl~D~~~~I 1051 (1251)
T KOG0414|consen  982 VVALGDLAVRFPNLI-----EPWTEHLYRRLRDESPSVRKTALLVLSHLIL-----NDMIKVKGQLSEMALCLEDPNAEI 1051 (1251)
T ss_pred             hheccchhhhccccc-----chhhHHHHHHhcCccHHHHHHHHHHHHHHHH-----hhhhHhcccHHHHHHHhcCCcHHH
Confidence            999999986444322     2345678888889999999999999999986     234555788999999999999999


Q ss_pred             HHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCC
Q 005282          252 HFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSS  289 (704)
Q Consensus       252 ~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~  289 (704)
                      +..|=..+..|+......      -+++|-++.-|.++
T Consensus      1052 sdlAk~FF~Els~k~n~i------ynlLPdil~~Ls~~ 1083 (1251)
T KOG0414|consen 1052 SDLAKSFFKELSSKGNTI------YNLLPDILSRLSNG 1083 (1251)
T ss_pred             HHHHHHHHHHhhhcccch------hhhchHHHHhhccC
Confidence            998888888887543211      13556666555554

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=92.89  E-value=1.2  Score=48.01  Aligned_cols=243  Identities=12%  Similarity=0.149  Sum_probs=152.9

Q ss_pred             HHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHcCCcHH
Q 005282           68 AKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALPH  147 (704)
Q Consensus        68 ~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~  147 (704)
                      +..-...|.+..  +...+.++..-.++.|+..+...+..        .++. ..+-.++...+.++     .+.+.+|.
T Consensus       271 K~~Ff~~L~~~l--~~~pe~i~~~kvlp~Ll~~~~~g~a~--------~~~l-tpl~k~~k~ld~~e-----yq~~i~p~  334 (690)
T KOG1243|consen  271 KQKFFSGLIDRL--DNFPEEIIASKVLPILLAALEFGDAA--------SDFL-TPLFKLGKDLDEEE-----YQVRIIPV  334 (690)
T ss_pred             HHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHhhccccc--------hhhh-hHHHHhhhhccccc-----cccchhhh
Confidence            344444444422  33334455556677777777766520        1222 22333333333333     56678899


Q ss_pred             HHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchh
Q 005282          148 LVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDEN  227 (704)
Q Consensus       148 L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~  227 (704)
                      |+++++..+.        .+|...+.-+-+..   +.....++..-++|.+..-+.+.++.+++.++.++..|+.  .-+
T Consensus       335 l~kLF~~~Dr--------~iR~~LL~~i~~~i---~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~--kL~  401 (690)
T KOG1243|consen  335 LLKLFKSPDR--------QIRLLLLQYIEKYI---DHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAP--KLS  401 (690)
T ss_pred             HHHHhcCcch--------HHHHHHHHhHHHHh---hhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHh--hhc
Confidence            9999999876        67766665555554   3344557788899999999999999999999999999874  111


Q ss_pred             hHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCC-HHHHHHHhcCCChhHHHHHHHHHHHHhc
Q 005282          228 KKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGA-LQPVIGLLSSSCSESKREAALLLGQFAA  306 (704)
Q Consensus       228 ~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~-l~~L~~ll~~~~~~~~~~a~~~L~~l~~  306 (704)
                      .. ......+..+-++-.+++..+|....-+|+.++.....    ....++ ...+..-+.++-...|..+..++.....
T Consensus       402 ~~-~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~----~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~  476 (690)
T KOG1243|consen  402 KR-NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAA----SVRKRVLASAFTRALKDPFVPARKAGVLALAATQE  476 (690)
T ss_pred             hh-hhcHHHHHHHHhhCccccCcccccceeeecccccccch----hhhccccchhhhhhhcCCCCCchhhhhHHHhhccc
Confidence            11 22222344555554567788999999999999755322    123333 3344455666666678888887776543


Q ss_pred             cCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 005282          307 ADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLA  347 (704)
Q Consensus       307 ~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~  347 (704)
                      .   .-..-+...+++.+..+..+++..++..|..++...-
T Consensus       477 ~---~~~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl  514 (690)
T KOG1243|consen  477 Y---FDQSEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFL  514 (690)
T ss_pred             c---cchhhhhhhccccccccccCcccchhhHHHHHHHHHH
Confidence            2   2222344568888888888888888888877776544

>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []

Probab=92.81  E-value=10  Score=38.57  Aligned_cols=164  Identities=15%  Similarity=0.154  Sum_probs=115.2

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhc-CChhhHHHHHHc-C-CHHHHHHHhcCC-----C--------hhHHHHHHHH
Q 005282          237 LPTLVLMLRSEDASVHFEAVGVIGNLVH-SSPSIKKEVILA-G-ALQPVIGLLSSS-----C--------SESKREAALL  300 (704)
Q Consensus       237 i~~L~~lL~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~-~-~l~~L~~ll~~~-----~--------~~~~~~a~~~  300 (704)
                      ++.+.+.|++....+...+++.|..++. ........+... + ..+.+..++...     .        +++|...+..
T Consensus        58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F  137 (330)
T PF11707_consen   58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF  137 (330)
T ss_pred             HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence            6788889988888899999999999998 554555555542 3 234555555321     1        2777777775


Q ss_pred             HHHHh-ccCCcchHHHHh-cCChHHHHHhhCCCCHHHHHHHHHHHHHhh-cCC----chhhhHHhhCChHHHHHhhcCCC
Q 005282          301 LGQFA-AADSNSKVHIVQ-RGAVRPLIEMLQSPDSQLKEMSAFALGRLA-QDT----HNQAGIAQDGGILPLLKLLDSKN  373 (704)
Q Consensus       301 L~~l~-~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~-~~~----~~~~~~~~~~~~~~L~~ll~~~~  373 (704)
                      +..+. ..++..+..++. .+.+..+.+-+..+++++....+.+|..-. ...    ..+..+.....+..|..+....+
T Consensus       138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~  217 (330)
T PF11707_consen  138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG  217 (330)
T ss_pred             HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence            54444 444455555554 467888999998888999999999998644 332    23445666777888888877766


Q ss_pred             h----hHHHHHHHHHHHcccCCchhhHHHhh
Q 005282          374 G----SLQHNAAFALYGLADNEDNVADLVRV  400 (704)
Q Consensus       374 ~----~v~~~a~~~L~~l~~~~~~~~~l~~~  400 (704)
                      +    .+...+-..|..++.++..--.+-..
T Consensus       218 ~~~~~~~~~~vh~fL~~lcT~p~~Gv~f~d~  248 (330)
T PF11707_consen  218 EDEKSSVADLVHEFLLALCTDPKHGVCFPDN  248 (330)
T ss_pred             CcccchHHHHHHHHHHHHhcCCCcccccCCC
Confidence            6    89999999999999877654444433

The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=92.75  E-value=0.42  Score=44.09  Aligned_cols=117  Identities=13%  Similarity=0.167  Sum_probs=78.5

Q ss_pred             ChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc--CChhhHHHHHHcCCcHHHHHHHhhccCCCCC-cchhHHHH
Q 005282           93 AVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA--VKPEHQQIIVDTGALPHLVSLLKQYKNGGNS-RALSGVIR  169 (704)
Q Consensus        93 ~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~--~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~-~~~~~~~~  169 (704)
                      ....++..+.+...          ..  ..+.-|....  ....+.+.+++.||+..|+.+|......... ..+.+...
T Consensus        67 ~p~~~i~~L~~~~~----------~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~  134 (187)
T PF06371_consen   67 SPEWYIKKLKSRPS----------TS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEH  134 (187)
T ss_dssp             HHHHHHHHHTTT------------HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHH
T ss_pred             hHHHHHHHHHccCc----------cH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHH
Confidence            34556777766653          11  2333333323  4556888999999999999999775432221 12347888


Q ss_pred             HHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 005282          170 RAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLA  221 (704)
Q Consensus       170 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~  221 (704)
                      .++.+|..+..........+...+++..|...+.+++..++..++..|..+|
T Consensus       135 ~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc  186 (187)
T PF06371_consen  135 ECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC  186 (187)
T ss_dssp             HHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence            8999999998644444555556788999999999999999999999998887

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=92.50  E-value=6.7  Score=40.43  Aligned_cols=170  Identities=13%  Similarity=0.092  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHH-HhhhcChhhhhhhhccCCcHHHHHHhcC-CCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHh
Q 005282          166 GVIRRAADAIT-NLAHENANIKTRVRVEDGIPPLVELLKF-VDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLM  243 (704)
Q Consensus       166 ~~~~~a~~~L~-~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l  243 (704)
                      +-+..|+.-|. .+|.++........ ..++..+++.|.+ .+...+..|++.|..++...+. +-.=-..-.+..+++.
T Consensus       302 ~~~k~alsel~~m~~e~sfsvWeq~f-~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~-~l~DstE~ai~K~Lea  379 (516)
T KOG2956|consen  302 SERKEALSELPKMLCEGSFSVWEQHF-AEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPA-RLFDSTEIAICKVLEA  379 (516)
T ss_pred             hHHHHHHHHHHHHHHccchhHHHHHH-HHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchH-hhhchHHHHHHHHHHH
Confidence            34445555333 34443322222111 2335567777776 7888999999999999963322 2111111134445555


Q ss_pred             hcCCCHHHHHHHHHH-HHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHH--hcCC
Q 005282          244 LRSEDASVHFEAVGV-IGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIV--QRGA  320 (704)
Q Consensus       244 L~~~~~~v~~~a~~~-L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~--~~~~  320 (704)
                      -.+.++++...|... +.-++...|..+        +..+..++...+......++..+-.++..-  .+..+.  -..+
T Consensus       380 a~ds~~~v~~~Aeed~~~~las~~P~~~--------I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l--~~EeL~~ll~di  449 (516)
T KOG2956|consen  380 AKDSQDEVMRVAEEDCLTTLASHLPLQC--------IVNISPLILTADEPRAVAVIKMLTKLFERL--SAEELLNLLPDI  449 (516)
T ss_pred             HhCCchhHHHHHHHHHHHHHHhhCchhH--------HHHHhhHHhcCcchHHHHHHHHHHHHHhhc--CHHHHHHhhhhh
Confidence            556666666665554 444555544432        334444554555555556665666665322  222222  2468


Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 005282          321 VRPLIEMLQSPDSQLKEMSAFALGRLA  347 (704)
Q Consensus       321 i~~L~~ll~~~~~~v~~~a~~~L~~l~  347 (704)
                      .|.++....+.+..+|+.|..+|..+.
T Consensus       450 aP~~iqay~S~SS~VRKtaVfCLVamv  476 (516)
T KOG2956|consen  450 APCVIQAYDSTSSTVRKTAVFCLVAMV  476 (516)
T ss_pred             hhHHHHHhcCchHHhhhhHHHhHHHHH
Confidence            899999999999999999999997765

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=92.43  E-value=2.9  Score=44.95  Aligned_cols=211  Identities=16%  Similarity=0.141  Sum_probs=130.0

Q ss_pred             hhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhc-CCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHH
Q 005282          164 LSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLK-FVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVL  242 (704)
Q Consensus       164 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~  242 (704)
                      ++.++..|..+|..+.--+.+..     ..-+|.++..+. +++|.+|.+|.-.++.+........+.     .-..|.+
T Consensus       909 d~~lq~aA~l~L~klMClS~~fc-----~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~de-----~t~yLyr  978 (1128)
T COG5098         909 DEELQVAAYLSLYKLMCLSFEFC-----SEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTADE-----HTHYLYR  978 (1128)
T ss_pred             CHHHHHHHHHHHHHHHHHhHHHH-----HHHHHHHHHHHhhCCCcceeccceeeccccceehhhhhHH-----HHHHHHH
Confidence            35888888888888753232222     245788888888 899999999999998876432222222     2345777


Q ss_pred             hhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChH
Q 005282          243 MLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVR  322 (704)
Q Consensus       243 lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~  322 (704)
                      -|.+.+..|++.++.++..+.-...     +--.|-++.+..+|.+++.++...|-..+..++..+..     +-.|.++
T Consensus       979 rL~De~~~V~rtclmti~fLilagq-----~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~KdNt-----~yn~fid 1048 (1128)
T COG5098         979 RLGDEDADVRRTCLMTIHFLILAGQ-----LKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKKDNT-----MYNGFID 1048 (1128)
T ss_pred             HhcchhhHHHHHHHHHHHHHHHccc-----eeeccchhhhHhhccCCcchHHHHHHHHHHHHHhcccc-----hhhhhHH
Confidence            7889999999999999999875431     22357889999999999999988888888888764332     2245555


Q ss_pred             HHHHhhCC---CCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcccCCchhhHHHh
Q 005282          323 PLIEMLQS---PDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADLVR  399 (704)
Q Consensus       323 ~L~~ll~~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~  399 (704)
                      ....+-++   ++.. -+.....|..+......+.++.+.    ...++.+.....--...+.++.||-...++...+++
T Consensus      1049 ifs~ls~~ae~g~e~-fk~II~FLt~fI~kerh~kql~E~----L~~rl~rc~tq~qwd~~~~~l~nLp~k~~~~~~Ll~ 1123 (1128)
T COG5098        1049 IFSTLSSDAENGQEP-FKLIIGFLTDFISKERHQKQLKES----LFLRLLRCNTQSQWDKLLCSLFNLPDKIAGSGGLLN 1123 (1128)
T ss_pred             HHHHcCchhhcCCCc-HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhhhhHHHHHHHHHHhcCCccccchhhHhh
Confidence            44443321   2222 234456666666554444433321    123444443333333445556666444444444443

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=92.39  E-value=2  Score=39.36  Aligned_cols=149  Identities=13%  Similarity=0.119  Sum_probs=96.0

Q ss_pred             HHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc--CChhhHHHHHHcCCc
Q 005282           68 AKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA--VKPEHQQIIVDTGAL  145 (704)
Q Consensus        68 ~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~--~~~~~~~~~~~~g~l  145 (704)
                      ...++..|.-++.+|+.+..+.++.+--.+..+|...+.    +.+|+ .+|..+..+++.+.  ++++....+....++
T Consensus       117 vcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~----~~~fE-yLRltsLGVIgaLvkNdsq~vi~fLltTeiv  191 (315)
T COG5209         117 VCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSS----NSKFE-YLRLTSLGVIGALVKNDSQYVIKFLLTTEIV  191 (315)
T ss_pred             HHHHHHHHHHHhcCcchheeeeecccceeeHhhhhcccc----CCccc-eeeehHHHHHHHHHhCCCHHHHHHHHhhhHH
Confidence            466777777788899999999888876666666665543    22232 68899999999999  566677788888999


Q ss_pred             HHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhh-------ccCCcHHHH-HHhcCCCHHHHHHHHHHH
Q 005282          146 PHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVR-------VEDGIPPLV-ELLKFVDVKVQRAAAGAL  217 (704)
Q Consensus       146 ~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-------~~~~i~~L~-~ll~~~~~~~~~~a~~~L  217 (704)
                      |..++.+...+.        --+..+..++..+..++....-...       ....+..++ ++...+...+.+.++++-
T Consensus       192 PLcLrIme~gSE--------lSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcY  263 (315)
T COG5209         192 PLCLRIMELGSE--------LSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCY  263 (315)
T ss_pred             HHHHHHHHhhhH--------HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHh
Confidence            999999988764        4455666666666543332211100       011112222 222345556667777777


Q ss_pred             HHhccCCchhhHH
Q 005282          218 RTLAFKNDENKKL  230 (704)
Q Consensus       218 ~~l~~~~~~~~~~  230 (704)
                      ..++. ++..|..
T Consensus       264 lRLsd-~p~aR~l  275 (315)
T COG5209         264 LRLSD-KPHARAL  275 (315)
T ss_pred             eeecC-CHhHHHH
Confidence            67763 5554443

>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]

Probab=92.22  E-value=1.4  Score=36.04  Aligned_cols=95  Identities=15%  Similarity=0.169  Sum_probs=66.3

Q ss_pred             cEEEEE-cCeEeehhHHHHhhcCHHHHHhhcCCCCCCCCCceEcCCCCHHHHHHHHHHHhcCcccc--------------
Q 005282          537 DVTFVV-EGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFIYTGNVDV--------------  601 (704)
Q Consensus       537 d~~~~~-~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~--------------  601 (704)
                      .+.+.. +|+.|.+.+.+ +-+|-..+.|+...- +. .-.|+.+.+...+|..+++|+-...-..              
T Consensus         3 ~i~l~s~dge~F~vd~~i-AerSiLikN~l~d~~-~~-n~p~p~pnVrSsvl~kv~ew~ehh~~s~sede~d~~~rks~p   79 (158)
T COG5201           3 MIELESIDGEIFRVDENI-AERSILIKNMLCDST-AC-NYPIPAPNVRSSVLMKVQEWMEHHTSSLSEDENDLEIRKSKP   79 (158)
T ss_pred             ceEEEecCCcEEEehHHH-HHHHHHHHHHhcccc-cc-CCCCcccchhHHHHHHHHHHHHhccccCCCccChHhhhccCC
Confidence            344544 67888887754 558888888876421 11 1246778999999999999996543221              


Q ss_pred             -----------ChhhHHHHHHHHhhhChHhHHHHHHHHHHhhCC
Q 005282          602 -----------SVDIAQDLLRAADQYLLEGLKRLCEYSIAQIIS  634 (704)
Q Consensus       602 -----------~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~  634 (704)
                                 +-+.+.++.-+|+|+.++.|.+.|...+...+.
T Consensus        80 ~D~wdr~Fm~vDqemL~eI~laaNYL~ikpLLd~gCKivaemir  123 (158)
T COG5201          80 SDFWDRFFMEVDQEMLLEICLAANYLEIKPLLDLGCKIVAEMIR  123 (158)
T ss_pred             ccHHHHHHHHhhHHHHHHHHHhhccccchHHHHHHHHHHHHHHc
Confidence                       223567888889999999999998877765444

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=92.19  E-value=9.3  Score=36.59  Aligned_cols=198  Identities=20%  Similarity=0.103  Sum_probs=114.0

Q ss_pred             hhhHHHHHHHHHHHHHhhcCh-hHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHHH
Q 005282           62 ETDRAAAKTASHALVEFAKNE-EIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQII  139 (704)
Q Consensus        62 ~~~~~~~~~a~~~L~~l~~~~-~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~  139 (704)
                      ..++..+...+..|..++.+. .....+     +..|..+...+..          +.+.-+.+.+..+. .++...   
T Consensus        12 ~~~~~~~~~~L~~L~~l~~~~~~~~~~v-----~~~L~~L~~~~~~----------~~~~~~~rLl~~lw~~~~r~f---   73 (234)
T PF12530_consen   12 ISDPELQLPLLEALPSLACHKNVCVPPV-----LQTLVSLVEQGSL----------ELRYVALRLLTLLWKANDRHF---   73 (234)
T ss_pred             CCChHHHHHHHHHHHHHhccCccchhHH-----HHHHHHHHcCCch----------hHHHHHHHHHHHHHHhCchHH---
Confidence            345556788888888888865 444444     6777777777765          56667788888888 443332   


Q ss_pred             HHcCCcHHHHHHHhh--ccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHh-cCCCHHHHHHHHHH
Q 005282          140 VDTGALPHLVSLLKQ--YKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELL-KFVDVKVQRAAAGA  216 (704)
Q Consensus       140 ~~~g~l~~L~~lL~~--~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~~~~~a~~~  216 (704)
                         +.+..++..+..  .....+....++........+..+|...|+     .-...++.+..++ ++.++..+..++.+
T Consensus        74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~-----~g~~ll~~ls~~L~~~~~~~~~alale~  145 (234)
T PF12530_consen   74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD-----HGVDLLPLLSGCLNQSCDEVAQALALEA  145 (234)
T ss_pred             ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh-----hHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence               223333333111  111111122346666667788899977776     2234578888999 78889999999999


Q ss_pred             HHHhccCCchhhHHhHh-cCChHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCh-hhHHHHHHcCCHHHHHHHhcCCCh
Q 005282          217 LRTLAFKNDENKKLIVE-CNALPTLVLMLR-SEDASVHFEAVGVIGNLVHSSP-SIKKEVILAGALQPVIGLLSSSCS  291 (704)
Q Consensus       217 L~~l~~~~~~~~~~~~~-~~~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~l~~L~~ll~~~~~  291 (704)
                      |..++..      .+++ ......+.+-+. ...+.+....+..+..+....- ..........++..+.++..+.+.
T Consensus       146 l~~Lc~~------~vvd~~s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~  217 (234)
T PF12530_consen  146 LAPLCEA------EVVDFYSAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSDV  217 (234)
T ss_pred             HHHHHHH------hhccHHHHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhcccccc
Confidence            9999931      1111 112333444443 3456666655555554443211 111222344556666666665554

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=92.17  E-value=7.8  Score=39.96  Aligned_cols=172  Identities=18%  Similarity=0.138  Sum_probs=101.8

Q ss_pred             hhHHHHHHHHHHHHHhhc-Ch-hHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHHH
Q 005282           63 TDRAAAKTASHALVEFAK-NE-EIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQII  139 (704)
Q Consensus        63 ~~~~~~~~a~~~L~~l~~-~~-~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~  139 (704)
                      +....+..|+.-|..+.+ +. .+.... -..++..+++.|.+..         ++..+..|.++|..++ ..+.-   +
T Consensus       299 e~a~~~k~alsel~~m~~e~sfsvWeq~-f~~iL~~l~EvL~d~~---------~~~~k~laLrvL~~ml~~Q~~~---l  365 (516)
T KOG2956|consen  299 ERASERKEALSELPKMLCEGSFSVWEQH-FAEILLLLLEVLSDSE---------DEIIKKLALRVLREMLTNQPAR---L  365 (516)
T ss_pred             cchhHHHHHHHHHHHHHHccchhHHHHH-HHHHHHHHHHHHccch---------hhHHHHHHHHHHHHHHHhchHh---h
Confidence            444456777776776665 31 111111 1234678889998843         2478999999999999 33321   1


Q ss_pred             HHc--CCcHHHHHHHhhccCCCCCcchhHHHHHHHHH-HHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHH
Q 005282          140 VDT--GALPHLVSLLKQYKNGGNSRALSGVIRRAADA-ITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGA  216 (704)
Q Consensus       140 ~~~--g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~-L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~  216 (704)
                      .+.  -++..+++.-++..+        ++...|... +.-++...|.. .       |..+..++...|......++..
T Consensus       366 ~DstE~ai~K~Leaa~ds~~--------~v~~~Aeed~~~~las~~P~~-~-------I~~i~~~Ilt~D~~~~~~~iKm  429 (516)
T KOG2956|consen  366 FDSTEIAICKVLEAAKDSQD--------EVMRVAEEDCLTTLASHLPLQ-C-------IVNISPLILTADEPRAVAVIKM  429 (516)
T ss_pred             hchHHHHHHHHHHHHhCCch--------hHHHHHHHHHHHHHHhhCchh-H-------HHHHhhHHhcCcchHHHHHHHH
Confidence            111  123344444444443        555555554 44444444432 2       3345555555666666667777


Q ss_pred             HHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 005282          217 LRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLV  263 (704)
Q Consensus       217 L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~  263 (704)
                      +-.++.+-+..--...-..+.|.+++.-.+....||+.|+.+|..+.
T Consensus       430 ~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv  476 (516)
T KOG2956|consen  430 LTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMV  476 (516)
T ss_pred             HHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHH
Confidence            77777422221112233567899999999999999999999998775

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=91.55  E-value=1.9  Score=48.43  Aligned_cols=176  Identities=17%  Similarity=0.159  Sum_probs=106.1

Q ss_pred             HHHHHhccCCcchHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCCchhhhHHhhCChH--HHHHhhcC-CChh
Q 005282          300 LLGQFAAADSNSKVHIVQRGAVRPLIEMLQS-PDSQLKEMSAFALGRLAQDTHNQAGIAQDGGIL--PLLKLLDS-KNGS  375 (704)
Q Consensus       300 ~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~--~L~~ll~~-~~~~  375 (704)
                      +|++.....++....+++.|++..+...++. ...+.+..+...+.|++...+.+........+.  .+..++.. .+.+
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e  573 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE  573 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence            7888888888999999999999999999985 566788899999999997665443322222222  33334444 4448


Q ss_pred             HHHHHHHHHHHcccCCch-hhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHH-HHHHHh-hccHHHHH
Q 005282          376 LQHNAAFALYGLADNEDN-VADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNH-LLYLLR-VADRAVKR  452 (704)
Q Consensus       376 v~~~a~~~L~~l~~~~~~-~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-L~~ll~-~~~~~v~~  452 (704)
                      .-..|+..|..+..+.+. ...-...-+-+.+.          +++.................+ +..++. +..+..+.
T Consensus       574 rsY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~----------e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~l  643 (699)
T KOG3665|consen  574 RSYNAASILALLLSDSEKTTECVFRNSVNELLV----------EAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQL  643 (699)
T ss_pred             HHHHHHHHHHHHHhCCCcCccccchHHHHHHHH----------HHhhccCccceeehhhhhcchhHHHHhcccCCCchHH
Confidence            888999999999865332 10000000000000          000000000000001111222 444443 45577889


Q ss_pred             HHHHHHHhccC-CCccceeeecCCcHHHHHHHHh
Q 005282          453 RVTLALAHLCA-PDDCKTIFIDNNGLELLLGLLE  485 (704)
Q Consensus       453 ~a~~~L~~l~~-~~~~~~~l~~~~~i~~L~~ll~  485 (704)
                      .|.|++.++.. .++......+.|+++.+...-.
T Consensus       644 Wal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~  677 (699)
T KOG3665|consen  644 WALWTIKNVLEQNKEYCKLVRESNGFELIENIRV  677 (699)
T ss_pred             HHHHHHHHHHHcChhhhhhhHhccchhhhhhcch
Confidence            99999999955 5556676778899988877654

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=91.54  E-value=21  Score=37.99  Aligned_cols=110  Identities=19%  Similarity=0.183  Sum_probs=74.9

Q ss_pred             hcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCC
Q 005282           79 AKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNG  158 (704)
Q Consensus        79 ~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~  158 (704)
                      ..+|+..+.+  +|.+..++..+.+.+.          .||..++++|+-+.+.-.--+...-.|.+..|..-+-+... 
T Consensus        80 ~~dpeg~~~V--~~~~~h~lRg~eskdk----------~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~-  146 (885)
T COG5218          80 PDDPEGEELV--AGTFYHLLRGTESKDK----------KVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREK-  146 (885)
T ss_pred             CCChhhhHHH--HHHHHHHHhcccCcch----------hHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchH-
Confidence            3456653333  5678888888888865          89999999999999443333444445666667666665554 


Q ss_pred             CCCcchhHHHHHHHHHHHHhhh--cChhhhhhhhccCCcHHHHHHhc-CCCHHHHHHHHH
Q 005282          159 GNSRALSGVIRRAADAITNLAH--ENANIKTRVRVEDGIPPLVELLK-FVDVKVQRAAAG  215 (704)
Q Consensus       159 ~~~~~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~  215 (704)
                             .++..|+.+|..+-.  ++++++       ....|+.+++ +++.++|..|+.
T Consensus       147 -------~VR~eAv~~L~~~Qe~~~neen~-------~~n~l~~~vqnDPS~EVRr~all  192 (885)
T COG5218         147 -------AVRREAVKVLCYYQEMELNEENR-------IVNLLKDIVQNDPSDEVRRLALL  192 (885)
T ss_pred             -------HHHHHHHHHHHHHHhccCChHHH-------HHHHHHHHHhcCcHHHHHHHHHH
Confidence                   899999999999863  233332       2345666666 567788876654

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=91.36  E-value=14  Score=35.41  Aligned_cols=126  Identities=23%  Similarity=0.143  Sum_probs=78.7

Q ss_pred             chHHHHHHHHHHHhhcCCh-hhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccC
Q 005282          115 EHEVEKECAFALGLLAVKP-EHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVED  193 (704)
Q Consensus       115 d~~v~~~a~~~L~~l~~~~-~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~  193 (704)
                      +++.+...+.+|..++.+. .+...+     ++.|..+......        +....+...+..+...++..-      +
T Consensus        14 ~~~~~~~~L~~L~~l~~~~~~~~~~v-----~~~L~~L~~~~~~--------~~~~~~~rLl~~lw~~~~r~f------~   74 (234)
T PF12530_consen   14 DPELQLPLLEALPSLACHKNVCVPPV-----LQTLVSLVEQGSL--------ELRYVALRLLTLLWKANDRHF------P   74 (234)
T ss_pred             ChHHHHHHHHHHHHHhccCccchhHH-----HHHHHHHHcCCch--------hHHHHHHHHHHHHHHhCchHH------H
Confidence            3589999999999999544 333222     2445555554433        444456666666665444321      3


Q ss_pred             CcHHHHHHh--------c--CCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhh-cCCCHHHHHHHHHHHHHH
Q 005282          194 GIPPLVELL--------K--FVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLML-RSEDASVHFEAVGVIGNL  262 (704)
Q Consensus       194 ~i~~L~~ll--------~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL-~~~~~~v~~~a~~~L~~l  262 (704)
                      .+..++..+        .  +...+.......++..+|...|+     .....++.+..++ ++.++.++..++.+|..+
T Consensus        75 ~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~-----~g~~ll~~ls~~L~~~~~~~~~alale~l~~L  149 (234)
T PF12530_consen   75 FLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD-----HGVDLLPLLSGCLNQSCDEVAQALALEALAPL  149 (234)
T ss_pred             HHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh-----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence            344344331        1  22345566666788888875555     2223577788888 788889999999999999


Q ss_pred             hc
Q 005282          263 VH  264 (704)
Q Consensus       263 ~~  264 (704)
                      +.
T Consensus       150 c~  151 (234)
T PF12530_consen  150 CE  151 (234)
T ss_pred             HH
Confidence            83

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=91.29  E-value=7.7  Score=40.79  Aligned_cols=153  Identities=12%  Similarity=0.180  Sum_probs=111.0

Q ss_pred             cHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCH----HHHHHHHHHHHHHhcCChhhH
Q 005282          195 IPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDA----SVHFEAVGVIGNLVHSSPSIK  270 (704)
Q Consensus       195 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~----~v~~~a~~~L~~l~~~~~~~~  270 (704)
                      ...++..+.+++...+..++.-+..++. ++.....++...++..|..++.+++.    .+....+.++..+-...- ..
T Consensus        85 a~~i~e~l~~~~~~~~~~a~k~l~sls~-d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv-vs  162 (713)
T KOG2999|consen   85 AKRIMEILTEGNNISKMEALKELDSLSL-DPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV-VS  162 (713)
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHhhccc-cHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce-ee
Confidence            3568888888888888889999999996 78888889999999999999987654    666677777777654321 00


Q ss_pred             HHHHHcCCHHHHHHHhc--CCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 005282          271 KEVILAGALQPVIGLLS--SSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQ  348 (704)
Q Consensus       271 ~~~~~~~~l~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~  348 (704)
                      =..+...++.....+..  ..+..+...|+..|-++..++......+.+.--++.|+..++..+..++..|...+..+..
T Consensus       163 W~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~  242 (713)
T KOG2999|consen  163 WESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFR  242 (713)
T ss_pred             eeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence            00111223334444432  2344567778888888887777777778888889999999999998888888777777764


Q ss_pred             C
Q 005282          349 D  349 (704)
Q Consensus       349 ~  349 (704)
                      .
T Consensus       243 ~  243 (713)
T KOG2999|consen  243 K  243 (713)
T ss_pred             h
Confidence            3

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=90.86  E-value=20  Score=36.94  Aligned_cols=240  Identities=17%  Similarity=0.136  Sum_probs=120.8

Q ss_pred             HHHHHHHHHHHhhc-CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCc
Q 005282          117 EVEKECAFALGLLA-VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGI  195 (704)
Q Consensus       117 ~v~~~a~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i  195 (704)
                      .++..++..+...+ ...+.-..+. ...+..+.++|.+......   .+.+...++..|..++. .+..+..+...+.+
T Consensus       111 kvK~~i~~~~~ly~~kY~e~f~~~l-~~fv~~vw~lL~~~~~~~~---~D~lv~~al~FL~~v~~-~~~~~~lf~~~~~L  185 (370)
T PF08506_consen  111 KVKAWICENLNLYAEKYEEEFEPFL-PTFVQAVWNLLTKISQQPK---YDILVSKALQFLSSVAE-SPHHKNLFENKPHL  185 (370)
T ss_dssp             HHHHHHHHHHHHHHHH-HHHHHHHH-HHHHHHHHHHHTC--SSGG---GHHHHHHHHHHHHHHHT-SHHHHTTT-SHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhccc---ccHHHHHHHHHHHHHHc-chhHHHHhCCHHHH
Confidence            55666666666655 3333222222 2345666677765433221   23666677777776654 33222211111112


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhc-CCCHHHHHHHHHHHHHHhcCChhhHHHHH
Q 005282          196 PPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLR-SEDASVHFEAVGVIGNLVHSSPSIKKEVI  274 (704)
Q Consensus       196 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  274 (704)
                      +.+++-             -++-+++. +++. ..+.+.+-.+-+-+-+. ++...-|..|+..|..++...+.....++
T Consensus       186 ~~Iie~-------------VI~Pnl~~-~e~D-~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~  250 (370)
T PF08506_consen  186 QQIIEK-------------VIFPNLCL-REED-EELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSIL  250 (370)
T ss_dssp             HHHHHH-------------THHHHHS---HHH-HHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHH-------------hccCccCC-CHHH-HHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHH
Confidence            222111             13445654 3333 33333334444444444 33345677888888888854222211111


Q ss_pred             HcCCHHHHHHHhc------CCChhHHHHHHHHHHHHhccCCc------------chHHHHhcCChHHHHHhhCCCCHHHH
Q 005282          275 LAGALQPVIGLLS------SSCSESKREAALLLGQFAAADSN------------SKVHIVQRGAVRPLIEMLQSPDSQLK  336 (704)
Q Consensus       275 ~~~~l~~L~~ll~------~~~~~~~~~a~~~L~~l~~~~~~------------~~~~~~~~~~i~~L~~ll~~~~~~v~  336 (704)
                          ...+..++.      +.++..+..|+..++.++.....            +...+....++|-|. --.+..+-++
T Consensus       251 ----~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLk  325 (370)
T PF08506_consen  251 ----MQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILK  325 (370)
T ss_dssp             ----HHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHH
T ss_pred             ----HHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchH
Confidence                122223332      34566677888888888754422            223344455566665 2224556788


Q ss_pred             HHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHH
Q 005282          337 EMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFAL  384 (704)
Q Consensus       337 ~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L  384 (704)
                      ..|++.+..+-..-+. .  .-.+.++.++++|.+++.-|+..|+.++
T Consensus       326 a~aik~~~~Fr~~l~~-~--~l~~~~~~l~~~L~~~~~vv~tyAA~~i  370 (370)
T PF08506_consen  326 ADAIKFLYTFRNQLPK-E--QLLQIFPLLVNHLQSSSYVVHTYAAIAI  370 (370)
T ss_dssp             HHHHHHHHHHGGGS-H-H--HHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhCCH-H--HHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence            8888888887764322 1  2234778899999999999999998775

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=90.47  E-value=5.7  Score=44.65  Aligned_cols=179  Identities=16%  Similarity=0.169  Sum_probs=111.2

Q ss_pred             HHHHhhc-ChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHcCCc--HHHHH
Q 005282           74 ALVEFAK-NEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGAL--PHLVS  150 (704)
Q Consensus        74 ~L~~l~~-~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l--~~L~~  150 (704)
                      +|.+... +++.++.+++.|++..+...++.-+.         .+++..++..+++++...+.+........+  ..+..
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~---------~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~  564 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDN---------EELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKV  564 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccc---------hhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH
Confidence            6667766 69999999999999999999997743         589999999999999444433322222222  24444


Q ss_pred             HHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHH
Q 005282          151 LLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKL  230 (704)
Q Consensus       151 lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~  230 (704)
                      ++...+.       .+.-..++..|+.+..+.+...                   ....+..+...+......-+.....
T Consensus       565 ~~~~w~~-------~ersY~~~siLa~ll~~~~~~~-------------------~~~~r~~~~~~l~e~i~~~~~~~~~  618 (699)
T KOG3665|consen  565 LLNKWDS-------IERSYNAASILALLLSDSEKTT-------------------ECVFRNSVNELLVEAISRWLTSEIR  618 (699)
T ss_pred             HHhhcch-------hhHHHHHHHHHHHHHhCCCcCc-------------------cccchHHHHHHHHHHhhccCcccee
Confidence            4444433       2566677888888876444310                   1112222222232222212222222


Q ss_pred             hHhcCChHH-HHHhhc-CCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhc
Q 005282          231 IVECNALPT-LVLMLR-SEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLS  287 (704)
Q Consensus       231 ~~~~~~i~~-L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~  287 (704)
                      +.....+.. +..++. +..+..+.+|+|++.++.+.+++..+.+...++++.+...-.
T Consensus       619 ~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~  677 (699)
T KOG3665|consen  619 VINDRSFFPRILRILRLSKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRV  677 (699)
T ss_pred             ehhhhhcchhHHHHhcccCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcch
Confidence            222222223 555555 557889999999999999998888887888888888776554

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=90.47  E-value=20  Score=37.19  Aligned_cols=187  Identities=12%  Similarity=0.101  Sum_probs=115.4

Q ss_pred             HHHHHHHHHHhhcC----hhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHH--HHHH
Q 005282           68 AKTASHALVEFAKN----EEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQ--IIVD  141 (704)
Q Consensus        68 ~~~a~~~L~~l~~~----~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~--~~~~  141 (704)
                      +..|+........+    ..+++.+.++=+.+.+-++|...+.+..++   |.-.+.-++.+|.-.|..|+...  .++ 
T Consensus        28 ~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcp---d~Vy~~i~itvLacFC~~pElAsh~~~v-  103 (698)
T KOG2611|consen   28 RFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCP---DDVYLQISITVLACFCRVPELASHEEMV-  103 (698)
T ss_pred             HHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCc---HHHHHHHHHHHHHHHhCChhhccCHHHH-
Confidence            55666666666652    566677888888899999998877644444   33456677888888888887543  444 


Q ss_pred             cCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCC-HHHHHHHHHHHHHh
Q 005282          142 TGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVD-VKVQRAAAGALRTL  220 (704)
Q Consensus       142 ~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~~~~~a~~~L~~l  220 (704)
                       +.||.|+.++....++... +.-.+.+.+..+|..++.. +.....++..|+++.+.++-.-++ ..-+.-++..+.-+
T Consensus       104 -~~IP~llev~~~~~d~d~e-~~~~m~~d~Y~cL~~Va~~-e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~alal~Vlll~  180 (698)
T KOG2611|consen  104 -SRIPLLLEVMSKGIDTDYE-DNLIMLEDCYECLYLVATA-EAGLMTLIASGGLRVIAQMYELPDGSHDMALALKVLLLL  180 (698)
T ss_pred             -HhhhHHHHHHHhcCCCchh-hhHHHHHHHHHHHHHHhcC-CchhHHHHhcCchHHHHHHHhCCCCchhHHHHHHHHHHH
Confidence             5799999999887653221 1125788899999999874 666777889999999997765322 11122222222222


Q ss_pred             cc---CCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 005282          221 AF---KNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLV  263 (704)
Q Consensus       221 ~~---~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~  263 (704)
                      ..   .-++....+...  +..+..-+...+...+...|..|..+.
T Consensus       181 ~~~~~cw~e~~~~flal--i~~va~df~~~~~a~KfElc~lL~~vl  224 (698)
T KOG2611|consen  181 VSKLDCWSETIERFLAL--IAAVARDFAVLHNALKFELCHLLSAVL  224 (698)
T ss_pred             HHhcccCcCCHHHHHHH--HHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            21   122222222211  233333333445566777888887554

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=90.08  E-value=8.2  Score=41.74  Aligned_cols=183  Identities=16%  Similarity=0.146  Sum_probs=116.3

Q ss_pred             HHHHHHhcC----CCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhc-CCCHHHHHHHHHHHHHHhcCChhhH
Q 005282          196 PPLVELLKF----VDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLR-SEDASVHFEAVGVIGNLVHSSPSIK  270 (704)
Q Consensus       196 ~~L~~ll~~----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~  270 (704)
                      |.......+    +|+.++.+|.-+|..+-.-+.+...     .-+|.++..+. +++|.+|..|+-.++.++-......
T Consensus       895 pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~-----ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~  969 (1128)
T COG5098         895 PVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCS-----EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTA  969 (1128)
T ss_pred             HHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHhhCCCcceeccceeeccccceehhhhh
Confidence            444455543    6889999988888877431222111     23688888887 8999999999999888764422211


Q ss_pred             HHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC
Q 005282          271 KEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDT  350 (704)
Q Consensus       271 ~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  350 (704)
                      .     ..-..|..-|.+.+..+++.|..++.++.-.+.     +--.|-++.+...|.+++..+...|-..+..++...
T Consensus       970 d-----e~t~yLyrrL~De~~~V~rtclmti~fLilagq-----~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~Kd 1039 (1128)
T COG5098         970 D-----EHTHYLYRRLGDEDADVRRTCLMTIHFLILAGQ-----LKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKKD 1039 (1128)
T ss_pred             H-----HHHHHHHHHhcchhhHHHHHHHHHHHHHHHccc-----eeeccchhhhHhhccCCcchHHHHHHHHHHHHHhcc
Confidence            1     223566677778889999999999998864321     222577888999999999999999888888888654


Q ss_pred             chhhhHHhhCChHHHHHhhcC----CChhHHHHHHHHHHHcccCCchhhHHHh
Q 005282          351 HNQAGIAQDGGILPLLKLLDS----KNGSLQHNAAFALYGLADNEDNVADLVR  399 (704)
Q Consensus       351 ~~~~~~~~~~~~~~L~~ll~~----~~~~v~~~a~~~L~~l~~~~~~~~~l~~  399 (704)
                      ..    +-+|.++. ...+.+    ++.+ -+...+.|..+...+.+.+++.+
T Consensus      1040 Nt----~yn~fidi-fs~ls~~ae~g~e~-fk~II~FLt~fI~kerh~kql~E 1086 (1128)
T COG5098        1040 NT----MYNGFIDI-FSTLSSDAENGQEP-FKLIIGFLTDFISKERHQKQLKE 1086 (1128)
T ss_pred             cc----hhhhhHHH-HHHcCchhhcCCCc-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            32    22344433 333332    2222 23444555555544444444433

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=89.39  E-value=26  Score=39.45  Aligned_cols=202  Identities=18%  Similarity=0.196  Sum_probs=110.3

Q ss_pred             ChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHH
Q 005282           93 AVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRA  171 (704)
Q Consensus        93 ~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a  171 (704)
                      ++..+.+++.....           .-..|...|..+. .......     ..+..+..+++......    ...+...|
T Consensus       396 av~~i~~~I~~~~~-----------~~~ea~~~l~~l~~~~~~Pt~-----e~l~~l~~L~~~~~~~~----~~~l~~ta  455 (618)
T PF01347_consen  396 AVKFIKDLIKSKKL-----------TDDEAAQLLASLPFHVRRPTE-----ELLKELFELAKSPKVKN----SPYLRETA  455 (618)
T ss_dssp             HHHHHHHHHHTT-S------------HHHHHHHHHHHHHT-----H-----HHHHHHHHHHT-HHHHT-----HHHHHHH
T ss_pred             HHHHHHHHHHcCCC-----------CHHHHHHHHHHHHhhcCCCCH-----HHHHHHHHHHhCccccC----ChhHHHHH
Confidence            45667777777543           2334555666655 2112111     23455666665432111    12677777


Q ss_pred             HHHHHHhhhcChh---------hhhhhhccCCcHHHHHHhc----CCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChH
Q 005282          172 ADAITNLAHENAN---------IKTRVRVEDGIPPLVELLK----FVDVKVQRAAAGALRTLAFKNDENKKLIVECNALP  238 (704)
Q Consensus       172 ~~~L~~l~~~~~~---------~~~~~~~~~~i~~L~~ll~----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~  238 (704)
                      +.+++.+....-.         ..........++.+...+.    ..+.+-+..++.+|+|+..           ...++
T Consensus       456 ~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~-----------~~~i~  524 (618)
T PF01347_consen  456 LLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH-----------PESIP  524 (618)
T ss_dssp             HHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT------------GGGHH
T ss_pred             HHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC-----------chhhH
Confidence            7777777632111         1122344456677776666    4567888899999999974           23567


Q ss_pred             HHHHhhcCC---CHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcC--CChhHHHHHHHHHHHHhccCCcchH
Q 005282          239 TLVLMLRSE---DASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSS--SCSESKREAALLLGQFAAADSNSKV  313 (704)
Q Consensus       239 ~L~~lL~~~---~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~~~~~  313 (704)
                      .+..++...   +..+|..|+++|..++...+..        +.+.++.++.+  .+.++|..|..+|...   +|..  
T Consensus       525 ~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~--------v~~~l~~I~~n~~e~~EvRiaA~~~lm~~---~P~~--  591 (618)
T PF01347_consen  525 VLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEK--------VREILLPIFMNTTEDPEVRIAAYLILMRC---NPSP--  591 (618)
T ss_dssp             HHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHH--------HHHHHHHHHH-TTS-HHHHHHHHHHHHHT------H--
T ss_pred             HHHhHhhhccccchHHHHHHHHHHHHHhhcCcHH--------HHHHHHHHhcCCCCChhHHHHHHHHHHhc---CCCH--
Confidence            777777755   6789999999999887655432        24566667654  3566777776666542   2332  


Q ss_pred             HHHhcCChHHHHHhhCC-CCHHHHHHHHHHH
Q 005282          314 HIVQRGAVRPLIEMLQS-PDSQLKEMSAFAL  343 (704)
Q Consensus       314 ~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L  343 (704)
                           ..+..+...+.. ++..|...+...|
T Consensus       592 -----~~l~~i~~~l~~E~~~QV~sfv~S~L  617 (618)
T PF01347_consen  592 -----SVLQRIAQSLWNEPSNQVASFVYSHL  617 (618)
T ss_dssp             -----HHHHHHHHHHTT-S-HHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHhhCchHHHHHHHHHhc
Confidence                 235666676754 4566665554443

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=89.38  E-value=11  Score=42.72  Aligned_cols=185  Identities=12%  Similarity=0.089  Sum_probs=122.4

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhh-cCCCHHHHHHHHHHHHHHhcCChhhHHHHH
Q 005282          196 PPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLML-RSEDASVHFEAVGVIGNLVHSSPSIKKEVI  274 (704)
Q Consensus       196 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  274 (704)
                      +.+..-+.+.++.-+..|+..+..... ++.........|.+..+++.. .+.+..+...++.+|..|+........ =.
T Consensus       256 ~~l~t~~~s~~WK~R~Eale~l~~~l~-e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~-~~  333 (815)
T KOG1820|consen  256 KNLETEMLSKKWKDRKEALEELVAILE-EAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFR-KY  333 (815)
T ss_pred             hHHHHhhhccchHHHHHHHHHHHHHHh-ccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhH-HH
Confidence            344445557889999999999998885 332111111223334444433 366888889999999999865433322 12


Q ss_pred             HcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCch--
Q 005282          275 LAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHN--  352 (704)
Q Consensus       275 ~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~--  352 (704)
                      ..++.+.++.-+......++..+..++..++....       .....+.+..++++.++.++..+...+.........  
T Consensus       334 ~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~-------l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~  406 (815)
T KOG1820|consen  334 AKNVFPSLLDRLKEKKSELRDALLKALDAILNSTP-------LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKT  406 (815)
T ss_pred             HHhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc-------HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcC
Confidence            34677888888887777777777666666553111       124578888999999999999987777777654432  


Q ss_pred             hhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHccc
Q 005282          353 QAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLAD  389 (704)
Q Consensus       353 ~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~  389 (704)
                      ...-.-.+.++.++....+.+.+||..|..++..+..
T Consensus       407 ~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k  443 (815)
T KOG1820|consen  407 VEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMK  443 (815)
T ss_pred             cchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHH
Confidence            1222223456667777888999999999998888753

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=89.35  E-value=3.8  Score=37.59  Aligned_cols=147  Identities=12%  Similarity=0.128  Sum_probs=100.7

Q ss_pred             HHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhh-cChhhhhhhhccCCcHHHH
Q 005282          121 ECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAH-ENANIKTRVRVEDGIPPLV  199 (704)
Q Consensus       121 ~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~~~~i~~L~  199 (704)
                      .|...|.-+++.|+.+..+.++..--.+..+|...+.+...   .-++..++..++.+.. +++.....+....++|.++
T Consensus       119 naL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~f---EyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcL  195 (315)
T COG5209         119 NALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKF---EYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCL  195 (315)
T ss_pred             HHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCcc---ceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHH
Confidence            45555555669999999999888766777777665543332   2678889999999884 4555666778889999999


Q ss_pred             HHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhc--------CChHHH-HHhhcCCCHHHHHHHHHHHHHHhcCChhhH
Q 005282          200 ELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVEC--------NALPTL-VLMLRSEDASVHFEAVGVIGNLVHSSPSIK  270 (704)
Q Consensus       200 ~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~--------~~i~~L-~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~  270 (704)
                      +++..++.-.+..|+.++..+.. ++..-+.+.+.        .++..+ .++...+.....+.++++-..++.. +..+
T Consensus       196 rIme~gSElSktvaifI~qkil~-dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~-p~aR  273 (315)
T COG5209         196 RIMELGSELSKTVAIFIFQKILG-DDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDK-PHAR  273 (315)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCC-HhHH
Confidence            99999998888888888888874 44443333221        112222 2233356677788888888888744 5555


Q ss_pred             HH
Q 005282          271 KE  272 (704)
Q Consensus       271 ~~  272 (704)
                      ..
T Consensus       274 ~l  275 (315)
T COG5209         274 AL  275 (315)
T ss_pred             HH
Confidence            43

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=89.28  E-value=22  Score=37.94  Aligned_cols=116  Identities=11%  Similarity=0.141  Sum_probs=82.1

Q ss_pred             cCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhh
Q 005282          276 AGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAG  355 (704)
Q Consensus       276 ~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~  355 (704)
                      .|.+.+++.-+.+++..++..++..|..+.. .-.-....+-++++..|.+-+-+..+.||..|..+|+.+-....+...
T Consensus        90 ~~~~~h~lRg~eskdk~VR~r~lqila~~~d-~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen  168 (885)
T COG5218          90 AGTFYHLLRGTESKDKKVRKRSLQILALLSD-VVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEEN  168 (885)
T ss_pred             HHHHHHHHhcccCcchhHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHH
Confidence            3567777777788899999999999888764 323344556678888888888888999999999999988755444332


Q ss_pred             HHhhCChHHHHHhh-cCCChhHHHHHHHHHHHcccCCchhhHHHh
Q 005282          356 IAQDGGILPLLKLL-DSKNGSLQHNAAFALYGLADNEDNVADLVR  399 (704)
Q Consensus       356 ~~~~~~~~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~  399 (704)
                      .+.    ..++.++ .+++.+||+.|   |.|+.-++.....+++
T Consensus       169 ~~~----n~l~~~vqnDPS~EVRr~a---llni~vdnsT~p~IlE  206 (885)
T COG5218         169 RIV----NLLKDIVQNDPSDEVRRLA---LLNISVDNSTYPCILE  206 (885)
T ss_pred             HHH----HHHHHHHhcCcHHHHHHHH---HHHeeeCCCcchhHHH
Confidence            221    2344555 45677888764   6677767777766665

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=89.19  E-value=11  Score=42.71  Aligned_cols=173  Identities=16%  Similarity=0.157  Sum_probs=116.5

Q ss_pred             hhHHHHHHHHHHHHhhhcChhhhhhhhccCCcH---HHHHHhc-CCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHH
Q 005282          164 LSGVIRRAADAITNLAHENANIKTRVRVEDGIP---PLVELLK-FVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPT  239 (704)
Q Consensus       164 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~---~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~  239 (704)
                      +|.-+..++..+...+....    .....+...   .++.... +.+..+...++.+|..++...... ..-...++.+.
T Consensus       266 ~WK~R~Eale~l~~~l~e~~----~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~-~~~~~~~v~p~  340 (815)
T KOG1820|consen  266 KWKDRKEALEELVAILEEAK----KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPL-FRKYAKNVFPS  340 (815)
T ss_pred             chHHHHHHHHHHHHHHhccc----cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchh-hHHHHHhhcch
Confidence            56667777777777775332    122233333   3333333 567788888999999998644433 22234457888


Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCC-cchHHHHhc
Q 005282          240 LVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADS-NSKVHIVQR  318 (704)
Q Consensus       240 L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~  318 (704)
                      +++-+....+.++..+..++-.++...+       .....+.+...+.+.++..+..+...+.......+ .....-.-.
T Consensus       341 lld~lkekk~~l~d~l~~~~d~~~ns~~-------l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~  413 (815)
T KOG1820|consen  341 LLDRLKEKKSELRDALLKALDAILNSTP-------LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVK  413 (815)
T ss_pred             HHHHhhhccHHHHHHHHHHHHHHHhccc-------HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHH
Confidence            9999988888888887777766654221       22356788889999999999998888777665444 222222224


Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 005282          319 GAVRPLIEMLQSPDSQLKEMSAFALGRLAQ  348 (704)
Q Consensus       319 ~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~  348 (704)
                      ++++.++....+.+.+||.+|..+++-+..
T Consensus       414 ~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k  443 (815)
T KOG1820|consen  414 TLVPHLIKHINDTDKDVRKAALEAVAAVMK  443 (815)
T ss_pred             HHhHHHhhhccCCcHHHHHHHHHHHHHHHH
Confidence            677888888888999999999999987764

>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []

Probab=88.98  E-value=1  Score=34.44  Aligned_cols=49  Identities=33%  Similarity=0.407  Sum_probs=33.2

Q ss_pred             cChhhHHHHHHHHhhhChHhHHHHHHHHHHhhCC---hhhHHHHHHHHHHcC
Q 005282          601 VSVDIAQDLLRAADQYLLEGLKRLCEYSIAQIIS---VENIMLMYELSEAYN  649 (704)
Q Consensus       601 ~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~---~~~~~~~~~~a~~~~  649 (704)
                      ++.+.+.+++.+|+|++++.|.+.|...+...+.   ++....++.+...+.
T Consensus        11 ~~~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~gks~eeir~~fgi~~d~t   62 (78)
T PF01466_consen   11 VDNDELFDLLNAANYLDIKGLLDLCCKYIANMIKGKSPEEIRKYFGIENDLT   62 (78)
T ss_dssp             S-HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-HHHHHHHHT---TSS
T ss_pred             cCHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhcCCCHHHHHHHcCCCCCCC
Confidence            4667899999999999999999999988866554   444445554444443

It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=88.28  E-value=8.4  Score=40.64  Aligned_cols=98  Identities=20%  Similarity=0.266  Sum_probs=66.3

Q ss_pred             cCCHHHHHHH-hcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhC-CCCHHHHHHHHHHHHHhhcCCchh
Q 005282          276 AGALQPVIGL-LSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQ-SPDSQLKEMSAFALGRLAQDTHNQ  353 (704)
Q Consensus       276 ~~~l~~L~~l-l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~  353 (704)
                      .|++..++.. .++.+.++++.|+.+|+-+|..+++         .+...+.+|. +.++.+|...+-+|+-.|.+...+
T Consensus       550 ~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~---------~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~  620 (926)
T COG5116         550 LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD---------LLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK  620 (926)
T ss_pred             chhHhhhheeecccCchHHHHHHHHheeeeEecCcc---------hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH
Confidence            3456666666 5677888888888888888764433         3445555554 567888888888888877765443


Q ss_pred             hhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcc
Q 005282          354 AGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLA  388 (704)
Q Consensus       354 ~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~  388 (704)
                      .      ++..|-.++.+.+.-||..|+-++.-+.
T Consensus       621 ~------a~diL~~L~~D~~dfVRQ~AmIa~~mIl  649 (926)
T COG5116         621 V------ATDILEALMYDTNDFVRQSAMIAVGMIL  649 (926)
T ss_pred             H------HHHHHHHHhhCcHHHHHHHHHHHHHHHH
Confidence            3      2344555667777778888877776664

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=88.27  E-value=1.8  Score=34.20  Aligned_cols=72  Identities=19%  Similarity=0.161  Sum_probs=56.0

Q ss_pred             cHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh
Q 005282          195 IPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPS  268 (704)
Q Consensus       195 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~  268 (704)
                      +...+..+.++.+.+|.+++..|+.+.....  .......+++..+...|+++++-|-..|+.+|..++...+.
T Consensus         5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~   76 (92)
T PF10363_consen    5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD   76 (92)
T ss_pred             HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence            3446677788889999999999999987443  22222345678888899999999999999999999966543

>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=88.21  E-value=40  Score=37.71  Aligned_cols=171  Identities=16%  Similarity=0.153  Sum_probs=83.3

Q ss_pred             cHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhH-hcCChHH----HHHhh---cCC----CHHHHHHHHHHHHHH
Q 005282          195 IPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIV-ECNALPT----LVLML---RSE----DASVHFEAVGVIGNL  262 (704)
Q Consensus       195 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~~~i~~----L~~lL---~~~----~~~v~~~a~~~L~~l  262 (704)
                      +|.++..|+.++.-+-..|+.++-.+-.-.......+. ...+.|.    +..+.   ..+    ++-+.+...+.+.-+
T Consensus       500 ~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~  579 (960)
T KOG1992|consen  500 LPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISIL  579 (960)
T ss_pred             HHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHhC
Confidence            46677777888888888888888877542222222222 2223222    22222   222    333334444433322


Q ss_pred             hcCChhhHHHHHHcCCHHHHH----HHhcCCChhH----HHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHH
Q 005282          263 VHSSPSIKKEVILAGALQPVI----GLLSSSCSES----KREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQ  334 (704)
Q Consensus       263 ~~~~~~~~~~~~~~~~l~~L~----~ll~~~~~~~----~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~  334 (704)
                          +....... ...+..|.    ...++++...    .-++..++-+.++..........+...+|.+-..+..+-.+
T Consensus       580 ----~~~i~p~~-~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~eDI~E  654 (960)
T KOG1992|consen  580 ----QSAIIPHA-PELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSEDIQE  654 (960)
T ss_pred             ----HHhhhhhh-hHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence                22110000 11222333    3333443322    22333333333333333333445566778888888777677


Q ss_pred             HHHHHHHHHHHhhcCCch--------------hhhHH-hhCChHHHHHhhc
Q 005282          335 LKEMSAFALGRLAQDTHN--------------QAGIA-QDGGILPLLKLLD  370 (704)
Q Consensus       335 v~~~a~~~L~~l~~~~~~--------------~~~~~-~~~~~~~L~~ll~  370 (704)
                      ..-.+...++.+.....+              ...++ ..|-++.+++++.
T Consensus       655 fiPYvfQlla~lve~~~~~ip~~~~~l~~~lLsp~lW~r~gNipalvrLl~  705 (960)
T KOG1992|consen  655 FIPYVFQLLAVLVEHSSGTIPDSYSPLFPPLLSPNLWKRSGNIPALVRLLQ  705 (960)
T ss_pred             HHHHHHHHHHHHHHhcCCCCchhHHHHHHHhcCHHHHhhcCCcHHHHHHHH
Confidence            777777777777654332              11233 3466777777664

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=88.08  E-value=11  Score=41.28  Aligned_cols=134  Identities=13%  Similarity=0.079  Sum_probs=90.2

Q ss_pred             hcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHh-cCCChhHHHHHHHHHHHHhccCCcc
Q 005282          233 ECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLL-SSSCSESKREAALLLGQFAAADSNS  311 (704)
Q Consensus       233 ~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~  311 (704)
                      ...++|.|...+++.+..++..++..+..++..-+   -..+..-++|.+..+. .+.+..++..++.++..+..     
T Consensus       387 ~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q-----  458 (700)
T KOG2137|consen  387 KEKILPLLYRSLEDSDVQIQELALQILPTVAESID---VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQ-----  458 (700)
T ss_pred             HHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc---HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHH-----
Confidence            34578888888889999999999999999985433   3455666778877664 45567788999999988862     


Q ss_pred             hHHHHhcCChHHHHHh---hCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhH
Q 005282          312 KVHIVQRGAVRPLIEM---LQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSL  376 (704)
Q Consensus       312 ~~~~~~~~~i~~L~~l---l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v  376 (704)
                        .+-...+++.+..+   .+..++.+.-....+..++.........+.....++.++-+...+.-..
T Consensus       459 --~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~L~~  524 (700)
T KOG2137|consen  459 --RLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPSLNG  524 (700)
T ss_pred             --HHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhcccccH
Confidence              12223344444444   4567888877777777777755444344455566666666665444333

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=88.00  E-value=14  Score=33.53  Aligned_cols=158  Identities=17%  Similarity=0.145  Sum_probs=91.2

Q ss_pred             HHHHHHHHHHHhhcCCchhhh------HH------hhCChHHHHHh-hcCCChhHHHHHHHHHHHcccCCchhhHHHhhC
Q 005282          335 LKEMSAFALGRLAQDTHNQAG------IA------QDGGILPLLKL-LDSKNGSLQHNAAFALYGLADNEDNVADLVRVG  401 (704)
Q Consensus       335 v~~~a~~~L~~l~~~~~~~~~------~~------~~~~~~~L~~l-l~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~g  401 (704)
                      +|..|+.+|..++...+.+..      +.      ..+.-..|+.+ +.+.++.+|..|+.+|..+-....  ..+..+.
T Consensus         2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk--~~L~~Ae   79 (182)
T PF13251_consen    2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSK--PFLAQAE   79 (182)
T ss_pred             hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccH--HHHHHHH
Confidence            566777777777766332211      11      11233445554 578899999999999999976542  2222211


Q ss_pred             CcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhh-ccHHHHHHHHHHHHhccCCCccceeeecCCc----
Q 005282          402 GVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRV-ADRAVKRRVTLALAHLCAPDDCKTIFIDNNG----  476 (704)
Q Consensus       402 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~----  476 (704)
                      --.   ....+.-+....++..+..++.        .|+..+.. .+..+...++.++..|.......+.  ..|-    
T Consensus        80 ~~~---~~~~sFtslS~tLa~~i~~lH~--------~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL--~~~ll~~~  146 (182)
T PF13251_consen   80 ESK---GPSGSFTSLSSTLASMIMELHR--------GLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRL--PPGLLTEV  146 (182)
T ss_pred             hcC---CCCCCcccHHHHHHHHHHHHHH--------HHHHHHhcccccHHHHHHHHHHHHHHccCChhhc--CHhHHHHH
Confidence            100   0011111122233333333322        45555544 4677888899999998654443332  2343    


Q ss_pred             HHHHHHHHhhcchhhhhhHHHHHHHHhhhcC
Q 005282          477 LELLLGLLESTSVKQREESSVALYKLATKAT  507 (704)
Q Consensus       477 i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~  507 (704)
                      +..+..++.+.+++++..+..++..+..-.+
T Consensus       147 v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~~  177 (182)
T PF13251_consen  147 VTQVRPLLRHRDPNVRVAALSCLGALLSVQP  177 (182)
T ss_pred             HHHHHHHHhcCCCcHHHHHHHHHHHHHcCCC
Confidence            4455566677999999999999998877554

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.72  E-value=7.2  Score=37.97  Aligned_cols=141  Identities=15%  Similarity=0.165  Sum_probs=94.1

Q ss_pred             cHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHH
Q 005282          195 IPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVI  274 (704)
Q Consensus       195 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  274 (704)
                      +...+..|.+++++....++..+..|+...++....... .++-.+++-+++....|-+.|+.+++.+.+.-.....   
T Consensus        90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~---  165 (334)
T KOG2933|consen   90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSID---  165 (334)
T ss_pred             HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence            344666777888888888888888887644433322222 2566778888889999999999999999855322222   


Q ss_pred             HcCCHHHHHHHhc----CCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 005282          275 LAGALQPVIGLLS----SSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQ  348 (704)
Q Consensus       275 ~~~~l~~L~~ll~----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~  348 (704)
                      +  .++.++..|.    ..+.-++..|-.+|..+..+-..       ..+++.|+..+++..+.++..++....++..
T Consensus       166 ~--~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp-------~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~  234 (334)
T KOG2933|consen  166 Q--ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP-------QKLLRKLIPILQHSNPRVRAKAALCFSRCVI  234 (334)
T ss_pred             H--HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh-------HHHHHHHHHHHhhhchhhhhhhhccccccce
Confidence            1  3444443332    23344688888888888643222       2357888888888888888888777766653

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=87.66  E-value=38  Score=35.23  Aligned_cols=126  Identities=11%  Similarity=0.171  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHHhhcCChh----hHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhcc
Q 005282          117 EVEKECAFALGLLAVKPE----HQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVE  192 (704)
Q Consensus       117 ~v~~~a~~~L~~l~~~~~----~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~  192 (704)
                      +-+-.|.-...+++.+.+    +++.+.++-+.+.+-+++.+.+.+.. .++.-.+..++..|.-+|. .|+...-----
T Consensus        26 ~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~d-cpd~Vy~~i~itvLacFC~-~pElAsh~~~v  103 (698)
T KOG2611|consen   26 EERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGD-CPDDVYLQISITVLACFCR-VPELASHEEMV  103 (698)
T ss_pred             HHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCC-CcHHHHHHHHHHHHHHHhC-ChhhccCHHHH
Confidence            677788888888884433    56678999999999999987654332 2334567777888888886 44443322223


Q ss_pred             CCcHHHHHHhcCC-C------HHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhc
Q 005282          193 DGIPPLVELLKFV-D------VKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLR  245 (704)
Q Consensus       193 ~~i~~L~~ll~~~-~------~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~  245 (704)
                      +.||.|..++... +      ..+...+-.+|..++. .+.....++..|+++.+.+.-.
T Consensus       104 ~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~-~e~G~~~Lia~G~~~~~~Q~y~  162 (698)
T KOG2611|consen  104 SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVAT-AEAGLMTLIASGGLRVIAQMYE  162 (698)
T ss_pred             HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhc-CCchhHHHHhcCchHHHHHHHh
Confidence            5688899888732 2      2377888899999996 6888888999999999987654

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=86.96  E-value=2.6  Score=33.35  Aligned_cols=72  Identities=15%  Similarity=0.104  Sum_probs=57.1

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCc
Q 005282          237 LPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSN  310 (704)
Q Consensus       237 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~  310 (704)
                      ....+..+.++.+.+|..++..|..+.....  .......+++..+...+.++++-+--+|+.+|..++...++
T Consensus         5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~   76 (92)
T PF10363_consen    5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD   76 (92)
T ss_pred             HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence            4556777889999999999999999997755  12222356788888999999999999999999999864443

>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised

Probab=86.86  E-value=49  Score=35.59  Aligned_cols=276  Identities=14%  Similarity=0.117  Sum_probs=135.4

Q ss_pred             HHHHHHHHhhhccCCchhhHHHHHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHH
Q 005282           46 DIRAQIDILNSKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFA  125 (704)
Q Consensus        46 ~~~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~  125 (704)
                      .++.+......++.. +....++..++..|..+............    ..+...+.....         ++--..-+.+
T Consensus        25 ~i~~iW~~~~DLi~~-~~p~e~R~~~~~ll~~~i~~~~~~~~~~R----~~fF~~I~~~~~---------~~d~~~~l~a   90 (464)
T PF11864_consen   25 SIEEIWYAAKDLIDP-NQPSEARRAALELLIACIKRQDSSSGLMR----AEFFRDISDPSN---------DDDFDLRLEA   90 (464)
T ss_pred             HHHHHHHHHhhhcCC-CCCHHHHHHHHHHHHHHHHccccccHHHH----HHHHHHHhcCCC---------chhHHHHHHH
Confidence            455555555555533 33445677778888777664322111111    223333344332         1333355666


Q ss_pred             HHhhc-CChhhHHHHHHcCCcHHHHHHHhhccC-----------------CCCC--cchhHHHHHHHHHHHHhhhcChhh
Q 005282          126 LGLLA-VKPEHQQIIVDTGALPHLVSLLKQYKN-----------------GGNS--RALSGVIRRAADAITNLAHENANI  185 (704)
Q Consensus       126 L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~-----------------~~~~--~~~~~~~~~a~~~L~~l~~~~~~~  185 (704)
                      |..|+ ++.+.  ...+.+..+.|...+.....                 ....  ..+.......+..+.++...+...
T Consensus        91 L~~LT~~Grdi--~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~  168 (464)
T PF11864_consen   91 LIALTDNGRDI--DFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNY  168 (464)
T ss_pred             HHHHHcCCcCc--hhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCCC
Confidence            66667 44444  23567788888887754320                 0000  001133344444555555433332


Q ss_pred             hhhhhccCCcHHHHHHhc-CCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhc
Q 005282          186 KTRVRVEDGIPPLVELLK-FVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVH  264 (704)
Q Consensus       186 ~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~  264 (704)
                      -..-.-.+.+..++.+.. ..++...+.++..+-.+.....-....+.  .++..|.....  ..+....+-.++.||+.
T Consensus       169 l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~--~~i~vLCsi~~--~~~l~~~~w~~m~nL~~  244 (464)
T PF11864_consen  169 LDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLS--PCIEVLCSIVN--SVSLCKPSWRTMRNLLK  244 (464)
T ss_pred             CCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHH--HHHHHHhhHhc--ccccchhHHHHHHHHHc
Confidence            222222334444444443 23344445555555555432211111111  11233333322  22666677788888885


Q ss_pred             CChhhHHHHHHcCCHHHHHHHhcC------CChhHHHHHHHHHHHHhccCCcchHHHHh-c--CChHHHHHhhCCCCHHH
Q 005282          265 SSPSIKKEVILAGALQPVIGLLSS------SCSESKREAALLLGQFAAADSNSKVHIVQ-R--GAVRPLIEMLQSPDSQL  335 (704)
Q Consensus       265 ~~~~~~~~~~~~~~l~~L~~ll~~------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~--~~i~~L~~ll~~~~~~v  335 (704)
                      ..-.       ...+..|..+|.+      .+..+.+-|+..+..+..+..+....-+. .  -+++.+...++.+++.+
T Consensus       245 S~~g-------~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v  317 (464)
T PF11864_consen  245 SHLG-------HSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRV  317 (464)
T ss_pred             CccH-------HHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCee
Confidence            4321       1235677777732      23445667788888777655322221111 2  26788888888777666


Q ss_pred             HHHHHHHHHHhhc
Q 005282          336 KEMSAFALGRLAQ  348 (704)
Q Consensus       336 ~~~a~~~L~~l~~  348 (704)
                      -..+...+.++..
T Consensus       318 ~~eIl~~i~~ll~  330 (464)
T PF11864_consen  318 DYEILLLINRLLD  330 (464)
T ss_pred             hHHHHHHHHHHHh
Confidence            6666677766664

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=86.34  E-value=1.9  Score=39.78  Aligned_cols=78  Identities=14%  Similarity=0.208  Sum_probs=60.0

Q ss_pred             hhhhhhccCCcHHHHHHhc---------CCCHHHHHHHHHHHHHhccCCchhhHHhH-hcCChHHHHHhhcCCCHHHHHH
Q 005282          185 IKTRVRVEDGIPPLVELLK---------FVDVKVQRAAAGALRTLAFKNDENKKLIV-ECNALPTLVLMLRSEDASVHFE  254 (704)
Q Consensus       185 ~~~~~~~~~~i~~L~~ll~---------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~~~i~~L~~lL~~~~~~v~~~  254 (704)
                      .-..++..||+..|+.+|.         ..+......++.|+..+.. +......+. ..+++..|...|.+++..++..
T Consensus        99 Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n-~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~  177 (187)
T PF06371_consen   99 WVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMN-TKYGLEAVLSHPDSVNLIALSLDSPNIKTRKL  177 (187)
T ss_dssp             HHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTS-SHHHHHHHHCSSSHHHHHHHT--TTSHHHHHH
T ss_pred             HHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHc-cHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHH
Confidence            3445667788888888776         2456888999999999995 555555555 5788999999999999999999


Q ss_pred             HHHHHHHHh
Q 005282          255 AVGVIGNLV  263 (704)
Q Consensus       255 a~~~L~~l~  263 (704)
                      ++.+|..+|
T Consensus       178 ~leiL~~lc  186 (187)
T PF06371_consen  178 ALEILAALC  186 (187)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998876

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=85.42  E-value=8.6  Score=34.23  Aligned_cols=148  Identities=13%  Similarity=0.110  Sum_probs=84.6

Q ss_pred             HHHHHHHHhhhccCCchhhHHHHHHHHHHHHHhhc-ChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHH
Q 005282           46 DIRAQIDILNSKFSSDETDRAAAKTASHALVEFAK-NEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAF  124 (704)
Q Consensus        46 ~~~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~  124 (704)
                      .-|++++.|..++..+ .+..++++++++|+-+.. ||-..+.+...  .+   ..- ..+.        +........ 
T Consensus         7 ~yP~LL~~L~~iLk~e-~s~~iR~E~lr~lGilGALDP~~~k~~~~~--~~---~~~-~~~~--------~~~~~~~~l-   70 (160)
T PF11865_consen    7 DYPELLDILLNILKTE-QSQSIRREALRVLGILGALDPYKHKSIQKS--LD---SKS-SENS--------NDESTDISL-   70 (160)
T ss_pred             HhHHHHHHHHHHHHhC-CCHHHHHHHHHHhhhccccCcHHHhccccc--CC---ccc-cccc--------cccchhhHH-
Confidence            3578889998888766 447799999999999876 66544432111  11   000 0000        001121111 


Q ss_pred             HHHhhc-CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhc
Q 005282          125 ALGLLA-VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLK  203 (704)
Q Consensus       125 ~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~  203 (704)
                      ...... ..+++    .-..++..|++.|+++.-.       .-...++.++.++... ...+..-.-..++|.++..++
T Consensus        71 ~~~~~~~~~ee~----y~~vvi~~L~~iL~D~sLs-------~~h~~vv~ai~~If~~-l~~~cv~~L~~viP~~l~~i~  138 (160)
T PF11865_consen   71 PMMGISPSSEEY----YPTVVINALMRILRDPSLS-------SHHTAVVQAIMYIFKS-LGLKCVPYLPQVIPIFLRVIR  138 (160)
T ss_pred             hhccCCCchHHH----HHHHHHHHHHHHHHhhhhH-------HHHHHHHHHHHHHHHh-cCcCchhHHHHHhHHHHHHHH
Confidence            111222 23333    3334578889988887653       3344566666666632 323333444567888889898


Q ss_pred             CCCHHHHHHHHHHHHHhc
Q 005282          204 FVDVKVQRAAAGALRTLA  221 (704)
Q Consensus       204 ~~~~~~~~~a~~~L~~l~  221 (704)
                      ..++..++....-|..|.
T Consensus       139 ~~~~~~~e~~~~qL~~lv  156 (160)
T PF11865_consen  139 TCPDSLREFYFQQLADLV  156 (160)
T ss_pred             hCCHHHHHHHHHHHHHHH
Confidence            777778877766666654

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>KOG1788 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.20  E-value=59  Score=37.46  Aligned_cols=262  Identities=19%  Similarity=0.142  Sum_probs=154.8

Q ss_pred             HHHHHHhhc-ChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHHHHHcCCcHHHH
Q 005282           72 SHALVEFAK-NEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQIIVDTGALPHLV  149 (704)
Q Consensus        72 ~~~L~~l~~-~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~~~~g~l~~L~  149 (704)
                      ..+|..+.. +.++.+.+.+++++..+++++-++            +-|...++++..|. .+|....    +.-+-.++
T Consensus       663 wDcLisllKnnteNqklFreanGvklilpflind------------ehRSslLrivscLitvdpkqvh----hqelmalV  726 (2799)
T KOG1788|consen  663 WDCLISLLKNNTENQKLFREANGVKLILPFLIND------------EHRSSLLRIVSCLITVDPKQVH----HQELMALV  726 (2799)
T ss_pred             HHHHHHHHhccchhhHHHHhhcCceEEEEeeech------------HHHHHHHHHHHHHhccCccccc----HHHHHHHH
Confidence            345555555 578888888999999999998443            56777777777777 5554211    11234667


Q ss_pred             HHHhhccCCC---C-CcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhc----------CCCHHHHHHHHH
Q 005282          150 SLLKQYKNGG---N-SRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLK----------FVDVKVQRAAAG  215 (704)
Q Consensus       150 ~lL~~~~~~~---~-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~----------~~~~~~~~~a~~  215 (704)
                      ..|++.....   . .+....+....+.+++.+..-+...+..+.+.++...|...|-          .+|..+...-..
T Consensus       727 dtLksgmvt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfk  806 (2799)
T KOG1788|consen  727 DTLKSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFK  806 (2799)
T ss_pred             HHHHhcceeccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHH
Confidence            7777632210   0 0111255666777888888777778888999999888776653          122222222222


Q ss_pred             HHHH---hc-cCCchhhHHhHhcCChHHHHHhhcCC--------------------------CHHHHHHHHHHHHHHhcC
Q 005282          216 ALRT---LA-FKNDENKKLIVECNALPTLVLMLRSE--------------------------DASVHFEAVGVIGNLVHS  265 (704)
Q Consensus       216 ~L~~---l~-~~~~~~~~~~~~~~~i~~L~~lL~~~--------------------------~~~v~~~a~~~L~~l~~~  265 (704)
                      .|..   ++ ..++.++..+...=.-+.+..+|+..                          +-.--..||..+-.+-.+
T Consensus       807 ilFrlfTlavcenasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfeledn  886 (2799)
T KOG1788|consen  807 ILFRLFTLAVCENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDN  886 (2799)
T ss_pred             HHHHHHHHHHhhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccc
Confidence            2221   11 12555554443322233333333311                          111111222222221100


Q ss_pred             ----------ChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhC---CCC
Q 005282          266 ----------SPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQ---SPD  332 (704)
Q Consensus       266 ----------~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~---~~~  332 (704)
                                .....+.+...|++..++..+-...+..+.+-...+..++..++.+.......|.++.|+.+..   +++
T Consensus       887 ifavntPsGqfnpdk~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiypflsgs  966 (2799)
T KOG1788|consen  887 IFAVNTPSGQFNPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYPFLSGS  966 (2799)
T ss_pred             eeeeccCCCCcCchHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhhhhcCC
Confidence                      0112355677899999998887778888888889999999888888888888899999888764   445


Q ss_pred             HHHHHHHHHHHHHhhcC
Q 005282          333 SQLKEMSAFALGRLAQD  349 (704)
Q Consensus       333 ~~v~~~a~~~L~~l~~~  349 (704)
                      .....++...+..++..
T Consensus       967 spfLshalkIvemLgay  983 (2799)
T KOG1788|consen  967 SPFLSHALKIVEMLGAY  983 (2799)
T ss_pred             chHhhccHHHHHHHhhc
Confidence            55566666666666643

>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []

Probab=85.19  E-value=46  Score=33.82  Aligned_cols=158  Identities=13%  Similarity=0.151  Sum_probs=112.6

Q ss_pred             cHHHHHHhcCCCHHHHHHHHHHHHHhcc-CCchhhHHhHh-cC-ChHHHHHhhcCC-----C--------HHHHHHHHHH
Q 005282          195 IPPLVELLKFVDVKVQRAAAGALRTLAF-KNDENKKLIVE-CN-ALPTLVLMLRSE-----D--------ASVHFEAVGV  258 (704)
Q Consensus       195 i~~L~~ll~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~-~~-~i~~L~~lL~~~-----~--------~~v~~~a~~~  258 (704)
                      +..+.+.|.+..+.+...++..|..++. +.......+.. -+ ..+.+.+++...     +        +.+|...+..
T Consensus        58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F  137 (330)
T PF11707_consen   58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF  137 (330)
T ss_pred             HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence            6678888888888899999999999987 55455555443 23 245566666411     1        2888888876


Q ss_pred             HHHHhc-CChhhHHHHHH-cCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCC----cchHHHHhcCChHHHHHhhCCCC
Q 005282          259 IGNLVH-SSPSIKKEVIL-AGALQPVIGLLSSSCSESKREAALLLGQFAAADS----NSKVHIVQRGAVRPLIEMLQSPD  332 (704)
Q Consensus       259 L~~l~~-~~~~~~~~~~~-~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~----~~~~~~~~~~~i~~L~~ll~~~~  332 (704)
                      +..+.. .++..+..+.. .+.+..+.+-|..++.++....+.+|..-.-.++    ..+..+.....+..|..+....+
T Consensus       138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~  217 (330)
T PF11707_consen  138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG  217 (330)
T ss_pred             HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence            666554 45556666664 5678888888888888888888888885443333    33445666678899999887666


Q ss_pred             H----HHHHHHHHHHHHhhcCCch
Q 005282          333 S----QLKEMSAFALGRLAQDTHN  352 (704)
Q Consensus       333 ~----~v~~~a~~~L~~l~~~~~~  352 (704)
                      +    .+...+-..|..+|.++..
T Consensus       218 ~~~~~~~~~~vh~fL~~lcT~p~~  241 (330)
T PF11707_consen  218 EDEKSSVADLVHEFLLALCTDPKH  241 (330)
T ss_pred             CcccchHHHHHHHHHHHHhcCCCc
Confidence            6    8999999999999976543

The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=85.14  E-value=68  Score=35.68  Aligned_cols=164  Identities=17%  Similarity=0.159  Sum_probs=94.7

Q ss_pred             CcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhh----cChhhhhhhhccCCcHHHHHHhc----CCCHHHHHHHHH
Q 005282          144 ALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAH----ENANIKTRVRVEDGIPPLVELLK----FVDVKVQRAAAG  215 (704)
Q Consensus       144 ~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~----~~~~~~~~~~~~~~i~~L~~ll~----~~~~~~~~~a~~  215 (704)
                      .+..+..+++++.....    ..+...|+.+++.+..    ..+.+. .......++.+...|.    ..+.+-+...+.
T Consensus       394 ~l~~l~~l~~~~~~~~~----~~l~~sa~l~~~~lv~~~c~~~~~~~-~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Lk  468 (574)
T smart00638      394 ILKALFELAESPEVQKQ----PYLRESALLAYGSLVRRYCVNTPSCP-DFVLEELLKYLHELLQQAVSKGDEEEIQLYLK  468 (574)
T ss_pred             HHHHHHHHhcCcccccc----HHHHHHHHHHHHHHHHHHhcCCCCCC-hhhHHHHHHHHHHHHHHHHhcCCchheeeHHH
Confidence            35667777776533221    2667777777777653    222111 1222345566666554    345666777888


Q ss_pred             HHHHhccCCchhhHHhHhcCChHHHHHhhc---CCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcC--CC
Q 005282          216 ALRTLAFKNDENKKLIVECNALPTLVLMLR---SEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSS--SC  290 (704)
Q Consensus       216 ~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~---~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~--~~  290 (704)
                      +|+|+..  +         ..++.+..++.   .....+|..|+++|..++...+..        +-+.++.++.+  .+
T Consensus       469 aLGN~g~--~---------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~--------v~~~l~~i~~n~~e~  529 (574)
T smart00638      469 ALGNAGH--P---------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK--------VQEVLLPIYLNRAEP  529 (574)
T ss_pred             hhhccCC--h---------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH--------HHHHHHHHHcCCCCC
Confidence            8888874  1         23455555554   235689999999999987544432        23456666643  45


Q ss_pred             hhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCC-CCHHHHHHHHH
Q 005282          291 SESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQS-PDSQLKEMSAF  341 (704)
Q Consensus       291 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~  341 (704)
                      +++|..|..+|...   +|..       ..+..+...+.. ++..|...+..
T Consensus       530 ~EvRiaA~~~lm~t---~P~~-------~~l~~ia~~l~~E~~~QV~sfv~S  571 (574)
T smart00638      530 PEVRMAAVLVLMET---KPSV-------ALLQRIAELLNKEPNLQVASFVYS  571 (574)
T ss_pred             hHHHHHHHHHHHhc---CCCH-------HHHHHHHHHHhhcCcHHHHHHhHH
Confidence            67777777766543   2332       235666666654 45566554443

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.18  E-value=17  Score=35.53  Aligned_cols=139  Identities=16%  Similarity=0.229  Sum_probs=90.5

Q ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHh
Q 005282          279 LQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQ  358 (704)
Q Consensus       279 l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  358 (704)
                      +...+..|.+.++.....++..+..++..+++.....+ +.++-.+++-+++....|-..|+.++..+.+.-.+...-  
T Consensus        90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L-~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~--  166 (334)
T KOG2933|consen   90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPML-HEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQ--  166 (334)
T ss_pred             HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence            45566777888888888888888888865554333222 245666777778888889999999999988664433222  


Q ss_pred             hCChHH-HHHhhcC---CChhHHHHHHHHHHHcccCCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcc
Q 005282          359 DGGILP-LLKLLDS---KNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGR  434 (704)
Q Consensus       359 ~~~~~~-L~~ll~~---~~~~v~~~a~~~L~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (704)
                        .+.. +..+++.   ++.-+++.|-.+|..+..+..-..                                       
T Consensus       167 --~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~---------------------------------------  205 (334)
T KOG2933|consen  167 --ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQK---------------------------------------  205 (334)
T ss_pred             --HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHH---------------------------------------
Confidence              2233 3344433   344578888888888754322211                                       


Q ss_pred             hhHHHHHHHhhccHHHHHHHHHHHHhc
Q 005282          435 VLNHLLYLLRVADRAVKRRVTLALAHL  461 (704)
Q Consensus       435 ~~~~L~~ll~~~~~~v~~~a~~~L~~l  461 (704)
                      +++.|+..+...++.++..++....++
T Consensus       206 ~L~~L~~~~~~~n~r~r~~a~~~~~~~  232 (334)
T KOG2933|consen  206 LLRKLIPILQHSNPRVRAKAALCFSRC  232 (334)
T ss_pred             HHHHHHHHHhhhchhhhhhhhcccccc
Confidence            344566667777888887777666555

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]

Probab=83.31  E-value=80  Score=38.07  Aligned_cols=175  Identities=15%  Similarity=0.082  Sum_probs=96.2

Q ss_pred             cCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHccc-CCchhhH
Q 005282          318 RGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLAD-NEDNVAD  396 (704)
Q Consensus       318 ~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~  396 (704)
                      .+++|.|-.-|.+.+..+|..|...++.+......+..-.........+.-+.+.+.+||..++....++-. +|+....
T Consensus       258 ~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~~  337 (1266)
T KOG1525|consen  258 LAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAKA  337 (1266)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhhH
Confidence            478999999999999999999999999998776544331112334456666778889999998887766653 4443332


Q ss_pred             HHhhCCcc-cccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHHHHHHHHhccC------CCccce
Q 005282          397 LVRVGGVQ-KLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCA------PDDCKT  469 (704)
Q Consensus       397 l~~~g~i~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~------~~~~~~  469 (704)
                      ....-.+. ...+....+....-...-...+....+...++..+...+++....||..|...|..+-.      +...+.
T Consensus       338 ~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~~~~~~~~~~k~  417 (1266)
T KOG1525|consen  338 STILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYKNVYCLRSAGGKE  417 (1266)
T ss_pred             HHHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccCccc
Confidence            22211111 11111111111000000001111111111155666677788889999999999987722      333333


Q ss_pred             eeecCCcHH-HHHHHHhhcchhhh
Q 005282          470 IFIDNNGLE-LLLGLLESTSVKQR  492 (704)
Q Consensus       470 ~l~~~~~i~-~L~~ll~~~~~~~~  492 (704)
                      .-.....|+ .|+.++...+.+.+
T Consensus       418 ~t~~~swIp~kLL~~~y~~~~~~r  441 (1266)
T KOG1525|consen  418 ITPPFSWIPDKLLHLYYENDLDDR  441 (1266)
T ss_pred             ccccccccchhHHhhHhhccccHH
Confidence            322233333 45555554433333

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=83.27  E-value=48  Score=36.11  Aligned_cols=179  Identities=20%  Similarity=0.144  Sum_probs=99.6

Q ss_pred             HHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhc---CChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHc
Q 005282          200 ELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVEC---NALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILA  276 (704)
Q Consensus       200 ~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~---~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~  276 (704)
                      ..+..-.++++..|+.+|+.+..+...+-...-..   +.+..++..+. .++..+..++++|.|+..+ +..++.+...
T Consensus       551 ~~l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~-~~g~~~~~s~  628 (745)
T KOG0301|consen  551 AILLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSN-PAGRELFMSR  628 (745)
T ss_pred             HHHhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccC-HHHHHHHHHH
Confidence            33445567788889999998886433332222211   23444444444 5678888999999999866 6555544432


Q ss_pred             --CCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCC-----CCHHHHHHHHHHHHHhhcC
Q 005282          277 --GALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQS-----PDSQLKEMSAFALGRLAQD  349 (704)
Q Consensus       277 --~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-----~~~~v~~~a~~~L~~l~~~  349 (704)
                        ..+..+...=..++..++...+....|++..-   .+.-.+.+..+.+...+..     ++.+.....+.||++|+..
T Consensus       629 ~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l---~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~  705 (745)
T KOG0301|consen  629 LESILDPVIEASSLSNKNLQIALATLALNYSVLL---IQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTV  705 (745)
T ss_pred             HHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHH---HhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccc
Confidence              12222222222233344443333333433110   0000113445555554432     3445556678889999999


Q ss_pred             CchhhhHHhhCChHHHHHhhcC-CChhHHHHHHHH
Q 005282          350 THNQAGIAQDGGILPLLKLLDS-KNGSLQHNAAFA  383 (704)
Q Consensus       350 ~~~~~~~~~~~~~~~L~~ll~~-~~~~v~~~a~~~  383 (704)
                      +....++.+.-.+..+++-+++ .+.+..+..+..
T Consensus       706 ~~~~~~~A~~~~v~sia~~~~~~~~~~~~k~~a~~  740 (745)
T KOG0301|consen  706 DASVIQLAKNRSVDSIAKKLKEAVSNPSGKNIARD  740 (745)
T ss_pred             cHHHHHHHHhcCHHHHHHHHHHhccCchhhHHHHH
Confidence            9888888888888888877754 333444444443

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=83.11  E-value=14  Score=33.20  Aligned_cols=110  Identities=15%  Similarity=0.186  Sum_probs=71.5

Q ss_pred             ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHc--CCHHHHHHHhcCCChh-HHHHHHHHHHHHh---ccCC
Q 005282          236 ALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILA--GALQPVIGLLSSSCSE-SKREAALLLGQFA---AADS  309 (704)
Q Consensus       236 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--~~l~~L~~ll~~~~~~-~~~~a~~~L~~l~---~~~~  309 (704)
                      .+..+..+|++.++.-|..++..+.-+++.++.  +.+.+.  ..+..++.+++.+++. +...++.++..+.   .+.+
T Consensus        26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~--e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p  103 (165)
T PF08167_consen   26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSW--EILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKP  103 (165)
T ss_pred             HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence            356688899999999999999999988866422  333332  3678888888776554 5677777776664   3344


Q ss_pred             cchHHHHhc---CChHHHHHhhCCCCHHHHHHHHHHHHHhhcC
Q 005282          310 NSKVHIVQR---GAVRPLIEMLQSPDSQLKEMSAFALGRLAQD  349 (704)
Q Consensus       310 ~~~~~~~~~---~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~  349 (704)
                      +..+.+...   ++++.++.+++.  ......++.+|..+...
T Consensus       104 ~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~  144 (165)
T PF08167_consen  104 TLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPH  144 (165)
T ss_pred             chHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHH
Confidence            444444332   344555555544  45667778888777653

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=83.00  E-value=7.7  Score=38.15  Aligned_cols=150  Identities=19%  Similarity=0.160  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHHhhcCChhhHHHHHHcC--CcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccC-
Q 005282          117 EVEKECAFALGLLAVKPEHQQIIVDTG--ALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVED-  193 (704)
Q Consensus       117 ~v~~~a~~~L~~l~~~~~~~~~~~~~g--~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~-  193 (704)
                      +-+--++-.++-++-++.....+...+  ....+..++.......    .+..+..++++++|+.. ++..+..+.... 
T Consensus        78 ~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~ml~lR~l~NlF~-~~~~~~~~~~~~~  152 (268)
T PF08324_consen   78 ESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSS----PPANQMLALRLLANLFS-HPPGRQLLLSHFD  152 (268)
T ss_dssp             CC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTS----SHHHHHHHHHHHHHHTT-SCCCHHHHHCTHH
T ss_pred             ccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCC----cHHHHHHHHHHHHHhhC-CCccHHHHHhccc
Confidence            446667777777777777666655443  2455566665544321    23788899999999986 444555554433 


Q ss_pred             -CcHHHHHHhcCC----CHHHHHHHHHHHHHhccCCchhh-HHhHhcCChHHHHHhhc--CCCHHHHHHHHHHHHHHhcC
Q 005282          194 -GIPPLVELLKFV----DVKVQRAAAGALRTLAFKNDENK-KLIVECNALPTLVLMLR--SEDASVHFEAVGVIGNLVHS  265 (704)
Q Consensus       194 -~i~~L~~ll~~~----~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~~~i~~L~~lL~--~~~~~v~~~a~~~L~~l~~~  265 (704)
                       .+...+..+...    +..++..+...+.|++......+ ..-.....+..+...+.  ..+++....++-+++++...
T Consensus       153 ~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~  232 (268)
T PF08324_consen  153 SSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSS  232 (268)
T ss_dssp             TCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCC
T ss_pred             chHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhcc
Confidence             233333333333    78899999999999975211111 10011113455555332  26899999999999999966


Q ss_pred             ChhhHH
Q 005282          266 SPSIKK  271 (704)
Q Consensus       266 ~~~~~~  271 (704)
                      ++....
T Consensus       233 ~~~~~~  238 (268)
T PF08324_consen  233 SDSAKQ  238 (268)
T ss_dssp             SHHHHH
T ss_pred             ChhHHH
Confidence            544433

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=82.28  E-value=13  Score=41.76  Aligned_cols=198  Identities=17%  Similarity=0.156  Sum_probs=105.7

Q ss_pred             CcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcC-hhhhhhhhccCCcHHHHHHhcC----CCHHHHHHHHHHHH
Q 005282          144 ALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHEN-ANIKTRVRVEDGIPPLVELLKF----VDVKVQRAAAGALR  218 (704)
Q Consensus       144 ~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~ll~~----~~~~~~~~a~~~L~  218 (704)
                      ++..+.+++.+...+         -..+...|..+.... .+..      ..+..+..++.+    .++.++..|+-+++
T Consensus       396 av~~i~~~I~~~~~~---------~~ea~~~l~~l~~~~~~Pt~------e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~  460 (618)
T PF01347_consen  396 AVKFIKDLIKSKKLT---------DDEAAQLLASLPFHVRRPTE------ELLKELFELAKSPKVKNSPYLRETALLSLG  460 (618)
T ss_dssp             HHHHHHHHHHTT-S----------HHHHHHHHHHHHHT-----H------HHHHHHHHHHT-HHHHT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCC---------HHHHHHHHHHHHhhcCCCCH------HHHHHHHHHHhCccccCChhHHHHHHHHHH
Confidence            456677777764431         122444455544322 1111      234456666653    45778888888888


Q ss_pred             HhccC---Cc------hhhHHhHhcCChHHHHHhhc----CCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHH
Q 005282          219 TLAFK---ND------ENKKLIVECNALPTLVLMLR----SEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGL  285 (704)
Q Consensus       219 ~l~~~---~~------~~~~~~~~~~~i~~L~~lL~----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~l  285 (704)
                      .+...   ..      ..........+++.+...+.    ..+...+..++.+|+|+-.  +         ..++.+..+
T Consensus       461 ~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~--~---------~~i~~l~~~  529 (618)
T PF01347_consen  461 SLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH--P---------ESIPVLLPY  529 (618)
T ss_dssp             HHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT---G---------GGHHHHHTT
T ss_pred             HHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC--c---------hhhHHHHhH
Confidence            77531   10      01111222335666666665    4567888999999999952  2         246777777


Q ss_pred             hcCC---ChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCC--CCHHHHHHHHHHHHHhhcCCchhhhHHhhC
Q 005282          286 LSSS---CSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQS--PDSQLKEMSAFALGRLAQDTHNQAGIAQDG  360 (704)
Q Consensus       286 l~~~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~  360 (704)
                      +...   +..+|..|+++|..++...+.        .+.+.|+.++.+  .++++|..|..+|...  ++..       .
T Consensus       530 i~~~~~~~~~~R~~Ai~Alr~~~~~~~~--------~v~~~l~~I~~n~~e~~EvRiaA~~~lm~~--~P~~-------~  592 (618)
T PF01347_consen  530 IEGKEEVPHFIRVAAIQALRRLAKHCPE--------KVREILLPIFMNTTEDPEVRIAAYLILMRC--NPSP-------S  592 (618)
T ss_dssp             STTSS-S-HHHHHHHHHTTTTGGGT-HH--------HHHHHHHHHHH-TTS-HHHHHHHHHHHHHT-----H-------H
T ss_pred             hhhccccchHHHHHHHHHHHHHhhcCcH--------HHHHHHHHHhcCCCCChhHHHHHHHHHHhc--CCCH-------H
Confidence            7655   567789999999987643322        245677777754  5678888887666542  1111       1


Q ss_pred             ChHHHHHhhc-CCChhHHHHHHHHH
Q 005282          361 GILPLLKLLD-SKNGSLQHNAAFAL  384 (704)
Q Consensus       361 ~~~~L~~ll~-~~~~~v~~~a~~~L  384 (704)
                      .+..+...+. +.+..|...+...|
T Consensus       593 ~l~~i~~~l~~E~~~QV~sfv~S~L  617 (618)
T PF01347_consen  593 VLQRIAQSLWNEPSNQVASFVYSHL  617 (618)
T ss_dssp             HHHHHHHHHTT-S-HHHHHHHHHHH
T ss_pred             HHHHHHHHHhhCchHHHHHHHHHhc
Confidence            2344455553 34566665554443

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal

Probab=81.33  E-value=56  Score=31.85  Aligned_cols=174  Identities=13%  Similarity=0.102  Sum_probs=96.7

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHhcc-------CCchhhHHhHhcCChHHHHHhhcCCC----HHHHHHHHHHHHHHhcC
Q 005282          197 PLVELLKFVDVKVQRAAAGALRTLAF-------KNDENKKLIVECNALPTLVLMLRSED----ASVHFEAVGVIGNLVHS  265 (704)
Q Consensus       197 ~L~~ll~~~~~~~~~~a~~~L~~l~~-------~~~~~~~~~~~~~~i~~L~~lL~~~~----~~v~~~a~~~L~~l~~~  265 (704)
                      .+++=+.++  .....++..|..++.       +..+.+-.+.-...+|.++.-+.+++    ......++..|+.++..
T Consensus        68 Ll~KGL~Ss--~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~  145 (262)
T PF14225_consen   68 LLLKGLRSS--STYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEA  145 (262)
T ss_pred             HHhCccCCC--CcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHh
Confidence            333444433  344556666666653       12223333333445777777776666    24556677888888743


Q ss_pred             ChhhHHHHHHcCCHHHHHHHhcC-CC---hhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHH
Q 005282          266 SPSIKKEVILAGALQPVIGLLSS-SC---SESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAF  341 (704)
Q Consensus       266 ~~~~~~~~~~~~~l~~L~~ll~~-~~---~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~  341 (704)
                      ..        .+.+..++..... .-   .+-...++..|..-..  ++.     +...+..|+.++.++.+.++..+..
T Consensus       146 ~~--------~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~--P~~-----~~~~l~~Ll~lL~n~~~w~~~~~L~  210 (262)
T PF14225_consen  146 QG--------LPNLARILSSYAKGRFRDKDDFLSQVVSYLREAFF--PDH-----EFQILTFLLGLLENGPPWLRRKTLQ  210 (262)
T ss_pred             CC--------CccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhC--chh-----HHHHHHHHHHHHhCCcHHHHHHHHH
Confidence            21        1223334433322 21   2223344444443221  221     1245778999999999999999999


Q ss_pred             HHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcc
Q 005282          342 ALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLA  388 (704)
Q Consensus       342 ~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~  388 (704)
                      .|..+....+.+.. .....+.++.++++.....-.-.+.......+
T Consensus       211 iL~~ll~~~d~~~~-~~~dlispllrlL~t~~~~eAL~VLd~~v~~s  256 (262)
T PF14225_consen  211 ILKVLLPHVDMRSP-HGADLISPLLRLLQTDLWMEALEVLDEIVTRS  256 (262)
T ss_pred             HHHHHhccccCCCC-cchHHHHHHHHHhCCccHHHHHHHHHHHHhhc
Confidence            99999977665544 44456888999997655433333333333333

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=81.24  E-value=13  Score=33.12  Aligned_cols=143  Identities=19%  Similarity=0.116  Sum_probs=81.2

Q ss_pred             ChHHHHHhhcCC-CHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHH
Q 005282          236 ALPTLVLMLRSE-DASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVH  314 (704)
Q Consensus       236 ~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~  314 (704)
                      .++.|+.+|+.+ +..+|+.++++|+.|-.-+|...+.+....-  .-  .-...+........   .+.  +.......
T Consensus        11 LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~--~~--~~~~~~~~~~~~~l---~~~--~~~~~~ee   81 (160)
T PF11865_consen   11 LLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLD--SK--SSENSNDESTDISL---PMM--GISPSSEE   81 (160)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCC--cc--ccccccccchhhHH---hhc--cCCCchHH
Confidence            467788888754 6899999999999998777765542222111  00  00001111111111   111  11112223


Q ss_pred             HHhcCChHHHHHhhCCCCH-HHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHc
Q 005282          315 IVQRGAVRPLIEMLQSPDS-QLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGL  387 (704)
Q Consensus       315 ~~~~~~i~~L~~ll~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l  387 (704)
                      ..-.-++..|++.|++++- .-...+..++.++......+..-.-...++.+++.++..+...++....-|+.|
T Consensus        82 ~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~l  155 (160)
T PF11865_consen   82 YYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADL  155 (160)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            3334568888888887542 334467777777774433333333345678888888877778888877776665

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=80.55  E-value=16  Score=32.77  Aligned_cols=115  Identities=17%  Similarity=0.188  Sum_probs=74.5

Q ss_pred             CCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcC--ChHHHHHhhcCC-CHHHHHHHHHHHHHHhc---CC
Q 005282          193 DGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECN--ALPTLVLMLRSE-DASVHFEAVGVIGNLVH---SS  266 (704)
Q Consensus       193 ~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~--~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~---~~  266 (704)
                      ..+..+..++++++++-+..++..+...+..++  .+.+.+.+  .+..++..|+.+ .+.+.+.++.++..+..   +.
T Consensus        25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~  102 (165)
T PF08167_consen   25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK  102 (165)
T ss_pred             HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            345568888999999999999998888885322  34444433  477888888864 45678888888877763   33


Q ss_pred             hhhHHHHHHc---CCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcc
Q 005282          267 PSIKKEVILA---GALQPVIGLLSSSCSESKREAALLLGQFAAADSNS  311 (704)
Q Consensus       267 ~~~~~~~~~~---~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~  311 (704)
                      ++..+.+...   ++++.++.++.+  ......++.+|..+...++..
T Consensus       103 p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt  148 (165)
T PF08167_consen  103 PTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTT  148 (165)
T ss_pred             CchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCcc
Confidence            4444444432   345555555554  455667777777766555443

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=80.35  E-value=17  Score=35.78  Aligned_cols=162  Identities=18%  Similarity=0.185  Sum_probs=92.4

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcC--ChHHHHHhhc----CCCHHHHHHHHHHHHHHhcCChhh
Q 005282          196 PPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECN--ALPTLVLMLR----SEDASVHFEAVGVIGNLVHSSPSI  269 (704)
Q Consensus       196 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~--~i~~L~~lL~----~~~~~v~~~a~~~L~~l~~~~~~~  269 (704)
                      ..+...+.+=.++-+..++..++-++. ++.....+...+  +...+..++.    +..+..+..++++++|+..+ +..
T Consensus        66 ~~~~~~~~~Wp~~~~fP~lDLlRl~~l-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~-~~~  143 (268)
T PF08324_consen   66 ILLLKILLSWPPESRFPALDLLRLAAL-HPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSH-PPG  143 (268)
T ss_dssp             HHHHHHHCCS-CCC-HHHHHHHHHHCC-CHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTS-CCC
T ss_pred             HHHHHHHHhCCCccchhHHhHHHHHHh-CccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCC-Ccc
Confidence            334444443333456677888888775 555544444333  2444555444    34678889999999999876 444


Q ss_pred             HHHHHH-cC-CHHHHHHHhcCC----ChhHHHHHHHHHHHHhccCCcch-HHHHhcCChHHHHHhh-CC-CCHHHHHHHH
Q 005282          270 KKEVIL-AG-ALQPVIGLLSSS----CSESKREAALLLGQFAAADSNSK-VHIVQRGAVRPLIEML-QS-PDSQLKEMSA  340 (704)
Q Consensus       270 ~~~~~~-~~-~l~~L~~ll~~~----~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~~~i~~L~~ll-~~-~~~~v~~~a~  340 (704)
                      +..+.. .+ .+-..+..+...    +..++..++..+.|++....... ..-....++..+...+ .. .++++...++
T Consensus       144 ~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~L  223 (268)
T PF08324_consen  144 RQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLL  223 (268)
T ss_dssp             HHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHH
T ss_pred             HHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHH
Confidence            444443 22 233333333332    56678888888888873211110 0000112355666633 33 6899999999


Q ss_pred             HHHHHhhcCCchhhhHHhh
Q 005282          341 FALGRLAQDTHNQAGIAQD  359 (704)
Q Consensus       341 ~~L~~l~~~~~~~~~~~~~  359 (704)
                      -+|+++...+.........
T Consensus       224 vAlGtL~~~~~~~~~~~~~  242 (268)
T PF08324_consen  224 VALGTLLSSSDSAKQLAKS  242 (268)
T ss_dssp             HHHHHHHCCSHHHHHHCCC
T ss_pred             HHHHHHhccChhHHHHHHH
Confidence            9999999766655555543

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=80.31  E-value=6.5  Score=36.86  Aligned_cols=82  Identities=24%  Similarity=0.291  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHHhccCCchhhHHhHhcCC-------hHHHHHhhc-CCCHHHHHHHHHHHHHHhcCChhhHHHHH-HcCC
Q 005282          208 KVQRAAAGALRTLAFKNDENKKLIVECNA-------LPTLVLMLR-SEDASVHFEAVGVIGNLVHSSPSIKKEVI-LAGA  278 (704)
Q Consensus       208 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~-------i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~  278 (704)
                      .-|+.|+.+|+.|+. .+.|...+...+-       +..|++++. ..++-.|+-|+-.|.+++..+......+. +.+.
T Consensus       139 SPqrlaLEaLcKLsV-~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~  217 (257)
T PF12031_consen  139 SPQRLALEALCKLSV-IENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC  217 (257)
T ss_pred             CHHHHHHHHHHHhhe-eccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence            458899999999996 5666666655543       445566665 46788999999999999998777665444 5788


Q ss_pred             HHHHHHHhcCCC
Q 005282          279 LQPVIGLLSSSC  290 (704)
Q Consensus       279 l~~L~~ll~~~~  290 (704)
                      +..|+.++.+..
T Consensus       218 i~~Li~FiE~a~  229 (257)
T PF12031_consen  218 ISHLIAFIEDAE  229 (257)
T ss_pred             HHHHHHHHHHHH
Confidence            999999987543

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=80.18  E-value=1.4  Score=41.12  Aligned_cols=89  Identities=22%  Similarity=0.293  Sum_probs=67.7

Q ss_pred             hhHHHHHHHHHHHcccCCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhh-ccHHHHH
Q 005282          374 GSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRV-ADRAVKR  452 (704)
Q Consensus       374 ~~v~~~a~~~L~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~-~~~~v~~  452 (704)
                      -.-|+.|+.+|+.|+-.+.|...++..+-...+.+                          ++..|..++.. +++..++
T Consensus       138 lSPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~--------------------------l~~~L~r~l~~~e~~v~RE  191 (257)
T PF12031_consen  138 LSPQRLALEALCKLSVIENNVDLILATPPFSRLER--------------------------LFHTLVRLLGMREDQVCRE  191 (257)
T ss_pred             CCHHHHHHHHHHHhheeccCcceeeeCCCHHHHHH--------------------------HHHHHHHHhccccchhHHH
Confidence            35799999999999998888888887666554332                          45567777754 6778899


Q ss_pred             HHHHHHHhccCCC--ccceeeecCCcHHHHHHHHhhcc
Q 005282          453 RVTLALAHLCAPD--DCKTIFIDNNGLELLLGLLESTS  488 (704)
Q Consensus       453 ~a~~~L~~l~~~~--~~~~~l~~~~~i~~L~~ll~~~~  488 (704)
                      .|...|.+|+...  -++.+-.+.+.|..|+.++....
T Consensus       192 fAvvlL~~La~~~~~~~r~iA~q~~~i~~Li~FiE~a~  229 (257)
T PF12031_consen  192 FAVVLLSNLAQGDEAAARAIAMQKPCISHLIAFIEDAE  229 (257)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHhhchHHHHHHHHHHHH
Confidence            9999999997643  44455567789999999998643

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	704
4hxt_A	252	Crystal Structure Of Engineered Protein. Northeast		3e-18
4hxt_A	252	Crystal Structure Of Engineered Protein. Northeast		2e-12
3hqi_A	312	Structures Of Spop-Substrate Complexes: Insights In		6e-17
4eoz_A	145	Crystal Structure Of The Spop Btb Domain Complexed		1e-16
4db8_A	252	Designed Armadillo-Repeat Protein Length = 252		6e-14
4db8_A	252	Designed Armadillo-Repeat Protein Length = 252		5e-13
4b8j_A	528	Rimp_alpha1a Length = 528		6e-13
4b8j_A	528	Rimp_alpha1a Length = 528		2e-09
2yns_A	490	Rimp_alpha_b54nls Length = 490		7e-13
2yns_A	490	Rimp_alpha_b54nls Length = 490		3e-09
3tpo_A	529	Crystal Structure Of D192aE396A MUTANT OF MOUSE IMP		9e-13
3tpo_A	529	Crystal Structure Of D192aE396A MUTANT OF MOUSE IMP		5e-04
1ial_A	453	Importin Alpha, Mouse Length = 453		2e-12
1ial_A	453	Importin Alpha, Mouse Length = 453		4e-04
3rz9_A	510	Mouse Importin Alpha-Ku80 Nls Peptide Complex Lengt		2e-12
3rz9_A	510	Mouse Importin Alpha-Ku80 Nls Peptide Complex Lengt		5e-04
1ejl_I	460	Mouse Importin Alpha-Sv40 Large T Antigen Nls Pepti		2e-12
1ejl_I	460	Mouse Importin Alpha-Sv40 Large T Antigen Nls Pepti		4e-04
4ba3_A	496	Mimp_alphadibb_a89nls Length = 496		2e-12
4ba3_A	496	Mimp_alphadibb_a89nls Length = 496		5e-04
3tpm_A	422	Crystal Structure Of Mal Rpel Domain In Complex Wit		3e-12
3tpm_A	422	Crystal Structure Of Mal Rpel Domain In Complex Wit		5e-04
1q1s_C	466	Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptid		3e-12
1q1s_C	466	Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptid		4e-04
3ukw_B	510	Mouse Importin Alpha: Bimax1 Peptide Complex Length		3e-12
3ukw_B	510	Mouse Importin Alpha: Bimax1 Peptide Complex Length		6e-04
2c1m_A	424	Nup50:importin-Alpha Complex Length = 424		3e-12
2c1m_A	424	Nup50:importin-Alpha Complex Length = 424		5e-04
3ve6_A	426	Crystal Structure Analysis Of Venezuelan Equine Enc		3e-12
3ve6_A	426	Crystal Structure Analysis Of Venezuelan Equine Enc		6e-04
4htv_A	509	Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex		3e-12
4htv_A	509	Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex		7e-04
3btr_C	427	Ar-Nls:importin-Alpha Complex Length = 427		3e-12
3btr_C	427	Ar-Nls:importin-Alpha Complex Length = 427		7e-04
1y2a_C	428	Structure Of Mammalian Importin Bound To The Non-Cl		3e-12
1y2a_C	428	Structure Of Mammalian Importin Bound To The Non-Cl		7e-04
2ynr_A	461	Mimp_alphadibb_b54nls Length = 461		3e-12
2ynr_A	461	Mimp_alphadibb_b54nls Length = 461		9e-04
3l3q_A	427	Mouse Importin Alpha-Peptm Nls Peptide Complex Leng		3e-12
3l3q_A	427	Mouse Importin Alpha-Peptm Nls Peptide Complex Leng		7e-04
3fex_C	467	Crystal Structure Of The Cbc-Importin Alpha Complex		1e-11
3fex_C	467	Crystal Structure Of The Cbc-Importin Alpha Complex		3e-06
4db9_A	210	Designed Armadillo Repeat Protein (Yiiim3aiii) Leng		7e-11
4db6_A	210	Designed Armadillo Repeat Protein (Yiiim3aii) Lengt		1e-10
4dba_A	210	Designed Armadillo Repeat Protein (Yiim3aii) Length		2e-10
3htm_A	172	Structures Of Spop-Substrate Complexes: Insights In		4e-10
3l6x_A	584	Crystal Structure Of P120 Catenin In Complex With E		9e-09
1wa5_B	530	Crystal Structure Of The Exportin Cse1p Complexed W		9e-09
1ee4_A	423	Crystal Structure Of Yeast Karyopherin (Importin) A		1e-08
1un0_A	443	Crystal Structure Of Yeast Karyopherin (Importin) A		1e-08
1ee5_A	424	Yeast Karyopherin (Importin) Alpha In A Complex Wit		1e-08
2c1t_A	454	Structure Of The Kap60p:nup2 Complex Length = 454		1e-08
1bk6_A	422	Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Leng		1e-08
1bk5_A	422	Karyopherin Alpha From Saccharomyces Cerevisiae Len		1e-08
4ap2_A	297	Crystal Structure Of The Human Klhl11-cul3 Complex		1e-08
3i3n_A	279	Crystal Structure Of The Btb-Back Domains Of Human		7e-08
2gl7_A	550	Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX		2e-07
1i7x_A	538	Beta-CateninE-Cadherin Complex Length = 538		3e-07
3ouw_A	540	Structure Of Beta-Catenin With Lef-1 Length = 540		3e-07
1jpw_A	540	Crystal Structure Of A Human Tcf-4 BETA-Catenin Com		3e-07
2z6h_A	644	Crystal Structure Of Beta-Catenin Armadillo Repeat		3e-07
1g3j_A	532	Crystal Structure Of The Xtcf3-CbdBETA-Catenin Arma		3e-07
1qz7_A	533	Beta-Catenin Binding Domain Of Axin In Complex With		4e-07
3tx7_A	527	Crystal Structure Of Lrh-1BETA-Catenin Complex Leng		4e-07
1luj_A	514	Crystal Structure Of The Beta-CateninICAT COMPLEX L		4e-07
2bct_A	516	The Armadillo Repeat Region From Murine Beta-Cateni		4e-07
4djs_A	518	Structure Of Beta-Catenin In Complex With A Stapled		4e-07
1jdh_A	529	Crystal Structure Of Beta-Catenin And Htcf-4 Length		4e-07
1t08_A	519	Crystal Structure Of Beta-CateninICAT HELICAL Domai		4e-07
2jdq_A	450	C-Terminal Domain Of Influenza A Virus Polymerase P		1e-06
2jdq_A	450	C-Terminal Domain Of Influenza A Virus Polymerase P		5e-05
3tj3_A	447	Structure Of Importin A5 Bound To The N-Terminus Of		1e-06
3tj3_A	447	Structure Of Importin A5 Bound To The N-Terminus Of		5e-05
1xm9_A	457	Structure Of The Armadillo Repeat Domain Of Plakoph		9e-06
2if5_A	120	Structure Of The Poz Domain Of Human Lrf, A Master		2e-05
3ifq_A	553	Interction Of Plakoglobin And Beta-Catenin With Des		2e-05
2nn2_A	133	Crystal Structure Of The Btb Domain From The LrfZBT		2e-05
3ltm_A	211	Structure Of A New Family Of Artificial Alpha Helic		5e-05
3ltj_A	201	Structure Of A New Family Of Artificial Alpha Helic		7e-05
3ga1_A	129	Crystal Structure Of The Human Nac1 Poz Domain Leng		9e-05
3sla_A	168	X-Ray Structure Of First Four Repeats Of Human Beta		2e-04
3sl9_A	167	X-Ray Structure Of Beta Catenin In Complex With Bcl		2e-04
3tt9_A	233	Crystal Structure Of The Stable Degradation Fragmen		3e-04
2z6g_A	780	Crystal Structure Of A Full-Length Zebrafish Beta-C		3e-04
1cs3_A	116	Structure Of BtbPOZ TRANSCRIPTION REPRESSION DOMAIN		4e-04
1buo_A	121	Btb Domain From Plzf Length = 121		4e-04

>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or329 Length = 252

Iteration: 1
 Score = 90.1 bits (222), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 66/192 (34%), Positives = 101/192 (52%), Gaps = 1/192 (0%)
Query: 194 GIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHF 253
           G+  LV+LL   D +VQ+ AA AL  +A   DE  K IV+   +  LV +L S D+ V  
Sbjct: 45  GVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQK 104
Query: 254 EAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKV 313
           EA   + N+        K ++ AG ++ ++ LL+S+ SE ++EAA  L   A+    +  
Sbjct: 105 EAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK 164
Query: 314 HIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQD-THNQAGIAQDGGILPLLKLLDSK 372
            IV  G V  L+++L S DS++++ +A AL  +A   T     I   GG+  L KLL S 
Sbjct: 165 AIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTST 224
Query: 373 NGSLQHNAAFAL 384
           +  +Q  A  AL
Sbjct: 225 DSEVQKEAQRAL 236

>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or329 Length = 252

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/175 (32%), Positives = 92/175 (52%), Gaps = 4/175 (2%)
Query: 235 NALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESK 294
           N +  LV +L S D+    EA   +  +     S  K ++ AG ++ ++ LL+S+ SE +
Sbjct: 2   NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQ 61
Query: 295 REAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQ--DTHN 352
           +EAA  L   A+    +   IV  G V  L+++L S DS++++ +A AL  +A   D   
Sbjct: 62  KEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAI 121
Query: 353 QAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDN-VADLVRVGGVQKL 406
           +A I   GG+  L+KLL S +  +Q  AA AL  +A   D  +  +V  GGV+ L
Sbjct: 122 KA-IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVL 175

>pdb|3HQI|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases: SpopmathxBTB3-Box-Pucsbc1 Length = 312

Iteration: 1
 Score = 86.3 bits (212), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 51/130 (39%), Positives = 72/130 (55%)
Query: 532 NPTLSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMM 591
           N   +D    V G++F AH+  L A S  F AMF+   +E     VEI ++   VF+ MM
Sbjct: 171 NSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMM 230
Query: 592 RFIYTGNVDVSVDIAQDLLRAADQYLLEGLKRLCEYSIAQIISVENIMLMYELSEAYNAT 651
            FIYTG       +A DLL AAD+Y LE LK +CE ++   +SVEN   +  L++ ++A 
Sbjct: 231 CFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSAD 290
Query: 652 TLKQSCILFI 661
            LK   + FI
Sbjct: 291 QLKTQAVDFI 300

>pdb|4EOZ|A Chain A, Crystal Structure Of The Spop Btb Domain Complexed With The Cul3 N- Terminal Domain Length = 145

Iteration: 1
 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 49/123 (39%), Positives = 69/123 (56%)
Query: 532 NPTLSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMM 591
           N   +D    V G++F AH+  L A S  F AMF+   +E     VEI ++   VF+ MM
Sbjct: 22  NSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMM 81
Query: 592 RFIYTGNVDVSVDIAQDLLRAADQYLLEGLKRLCEYSIAQIISVENIMLMYELSEAYNAT 651
            FIYTG       +A DLL AAD+Y LE LK +CE ++   +SVEN   +  L++ ++A 
Sbjct: 82  CFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSAD 141
Query: 652 TLK 654
            LK
Sbjct: 142 QLK 144

>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein Length = 252

Iteration: 1
 Score = 76.3 bits (186), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 122/246 (49%), Gaps = 22/246 (8%)
Query: 54  LNSKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIP 113
           +  + +SD+     + T   + +    NE+I + ++D GA+PALV+ L +P         
Sbjct: 17  MTQQLNSDDMQEQLSATRKFSQILSDGNEQIQA-VIDAGALPALVQLLSSP--------- 66
Query: 114 YEHEVEKECAFALGLLAVKPEHQ-QIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAA 172
              ++ +E  +AL  +A     Q Q ++D GALP LV LL        S     +++ A 
Sbjct: 67  -NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL--------SSPNEQILQEAL 117
Query: 173 DAITNLAHENANIKTRVRVEDG-IPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLI 231
            A++N+A    N + +  ++ G +P LV+LL   + ++ + A  AL  +A   +E  + +
Sbjct: 118 WALSNIAS-GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 176
Query: 232 VECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCS 291
           ++  ALP LV +L S +  +  EA+  + N+       K+ V  AGAL+ +  L S    
Sbjct: 177 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENE 236
Query: 292 ESKREA 297
           + ++EA
Sbjct: 237 KIQKEA 242

>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein Length = 252

Iteration: 1
 Score = 73.2 bits (178), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 106/215 (49%), Gaps = 2/215 (0%)
Query: 195 IPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFE 254
           +P + + L   D++ Q +A      +    +E  + +++  ALP LV +L S +  +  E
Sbjct: 14  LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 255 AVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVH 314
           A+  + N+        + VI AGAL  ++ LLSS   +  +EA   L   A+  +     
Sbjct: 74  ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 133
Query: 315 IVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILP-LLKLLDSKN 373
           ++  GA+  L+++L SP+ Q+ + + +AL  +A   + Q     D G LP L++LL S N
Sbjct: 134 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN 193
Query: 374 GSLQHNAAFALYGLADNEDNVADLVR-VGGVQKLQ 407
             +   A +AL  +A   +     V+  G ++KL+
Sbjct: 194 EQILQEALWALSNIASGGNEQKQAVKEAGALEKLE 228

>pdb|4B8J|A Chain A, Rimp_alpha1a Length = 528

Iteration: 1
 Score = 72.8 bits (177), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 74/304 (24%), Positives = 143/304 (47%), Gaps = 23/304 (7%)
Query: 71  ASHALVEFAKN-EEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLL 129
           A+ AL   A    E   +++D+GAVP  V+ L +             +V ++  +ALG +
Sbjct: 138 AAWALTNIASGTSENTKVVIDHGAVPIFVKLLGS----------SSDDVREQAVWALGNV 187
Query: 130 AV-KPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTR 188
           A   P+ + +++  GAL  L++ L ++        LS ++R A   ++N         + 
Sbjct: 188 AGDSPKCRDLVLANGALLPLLAQLNEHTK------LS-MLRNATWTLSNFCRGKPQ-PSF 239
Query: 189 VRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSED 248
            +    +P L  L+   D +V   A  AL  L+   ++  + ++E    P LV +L    
Sbjct: 240 EQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPS 299
Query: 249 ASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSES-KREAALLLGQFAAA 307
            SV   A+  +GN+V    +  + +I   AL  ++ LL+ +  +S K+EA   +    A 
Sbjct: 300 PSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAG 359
Query: 308 DSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGR-LAQDTHNQAG-IAQDGGILPL 365
           + +    ++  G + PL+ +LQ+ +  +K+ +A+A+    +  +H+Q   +  +G I PL
Sbjct: 360 NKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPL 419
Query: 366 LKLL 369
             LL
Sbjct: 420 CDLL 423

>pdb|4B8J|A Chain A, Rimp_alpha1a Length = 528

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 84/178 (47%), Gaps = 4/178 (2%)
Query: 195 IPPLVELLKFVDV-KVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHF 253
           +P  V+ L   D  ++Q  AA AL  +A    EN K++++  A+P  V +L S    V  
Sbjct: 119 VPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVRE 178
Query: 254 EAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESK-REAALLLGQFAAADSNSK 312
           +AV  +GN+   SP  +  V+  GAL P++  L+     S  R A   L  F        
Sbjct: 179 QAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPS 238
Query: 313 VHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILP-LLKLL 369
                R A+  L  ++ S D ++   + +AL  L+  T+++     + G+ P L++LL
Sbjct: 239 FEQT-RPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL 295

>pdb|2YNS|A Chain A, Rimp_alpha_b54nls Length = 490

Iteration: 1
 Score = 72.4 bits (176), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 74/304 (24%), Positives = 143/304 (47%), Gaps = 23/304 (7%)
Query: 71  ASHALVEFAKN-EEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLL 129
           A+ AL   A    E   +++D+GAVP  V+ L +             +V ++  +ALG +
Sbjct: 100 AAWALTNIASGTSENTKVVIDHGAVPIFVKLLGS----------SSDDVREQAVWALGNV 149
Query: 130 AV-KPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTR 188
           A   P+ + +++  GAL  L++ L ++        LS ++R A   ++N         + 
Sbjct: 150 AGDSPKCRDLVLANGALLPLLAQLNEHTK------LS-MLRNATWTLSNFCRGKPQ-PSF 201
Query: 189 VRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSED 248
            +    +P L  L+   D +V   A  AL  L+   ++  + ++E    P LV +L    
Sbjct: 202 EQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPS 261
Query: 249 ASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSES-KREAALLLGQFAAA 307
            SV   A+  +GN+V    +  + +I   AL  ++ LL+ +  +S K+EA   +    A 
Sbjct: 262 PSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAG 321
Query: 308 DSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGR-LAQDTHNQAG-IAQDGGILPL 365
           + +    ++  G + PL+ +LQ+ +  +K+ +A+A+    +  +H+Q   +  +G I PL
Sbjct: 322 NKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPL 381
Query: 366 LKLL 369
             LL
Sbjct: 382 CDLL 385

>pdb|2YNS|A Chain A, Rimp_alpha_b54nls Length = 490

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 84/178 (47%), Gaps = 4/178 (2%)
Query: 195 IPPLVELLKFVDV-KVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHF 253
           +P  V+ L   D  ++Q  AA AL  +A    EN K++++  A+P  V +L S    V  
Sbjct: 81  VPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVRE 140
Query: 254 EAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESK-REAALLLGQFAAADSNSK 312
           +AV  +GN+   SP  +  V+  GAL P++  L+     S  R A   L  F        
Sbjct: 141 QAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPS 200
Query: 313 VHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILP-LLKLL 369
                R A+  L  ++ S D ++   + +AL  L+  T+++     + G+ P L++LL
Sbjct: 201 FEQT-RPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL 257

>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN ALPHA2 Length = 529

Iteration: 1
 Score = 72.4 bits (176), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 134/293 (45%), Gaps = 24/293 (8%)
Query: 88  IVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQIIVDTGALP 146
           +VD GA+PA +  L +P         + H + ++  +ALG +A      + +++  GA+ 
Sbjct: 158 VVDGGAIPAFISLLASP---------HAH-ISEQAVWALGNIAGAGSAFRDLVIKHGAID 207
Query: 147 HLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVD 206
            L++LL        S    G +R     ++NL            VE  +P LV LL   D
Sbjct: 208 PLLALLAVPDL---STLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHND 264
Query: 207 VKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSS 266
            +V   +  A+  L    +E  +++V+   +P LV +L + +  +   A+  IGN+V  +
Sbjct: 265 PEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT 324
Query: 267 PSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIE 326
               ++VI AGAL     LL++  +  ++EA   +    A   +    +V  G V  L+ 
Sbjct: 325 DEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVG 384
Query: 327 MLQSPDSQLKEMSAFAL------GRLAQDTHNQAGIAQDGGILPLLKLLDSKN 373
           +L   D + ++ +A+A+      G + Q  +    +   G I PL+ LL +K+
Sbjct: 385 VLSKADFKTQKAAAWAITNYTSGGTVEQIVY----LVHCGIIEPLMNLLSAKD 433

>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN ALPHA2 Length = 529

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 73/345 (21%), Positives = 142/345 (41%), Gaps = 34/345 (9%)
Query: 139 IVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDG-IPP 197
           I+  G +P  VS L +          S +   +A A+TN+A   +  +T+  V+ G IP 
Sbjct: 115 IIRAGLIPKFVSFLGKTD-------CSPIQFESAWALTNIASGTSE-QTKAVVDGGAIPA 166
Query: 198 LVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVG 257
            + LL      +   A  AL  +A      + L+++  A+  L+ +L   D S    A G
Sbjct: 167 FISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTL--ACG 224
Query: 258 VIGNLVHSSPSIKKEVILAGALQPV-------IGLLSSSCSESKREAALLLGQFAAADSN 310
            + NL  +  ++ +    A  L  V       + LL  +  E   ++   +       + 
Sbjct: 225 YLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNE 284
Query: 311 SKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLL-KLL 369
               +V++G V  L+++L + +  +   +  A+G +   T  Q     D G L +   LL
Sbjct: 285 RIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL 344
Query: 370 DSKNGSLQHNAAFALYGL-ADNEDNVADLVRVG------GVQKLQDGEFTVQP------T 416
            +   ++Q  A + +  + A  +D +  +V  G      GV  L   +F  Q       T
Sbjct: 345 TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGV--LSKADFKTQKAAAWAIT 402
Query: 417 KDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHL 461
                 T++++   VH  ++  L+ LL   D  + + +  A++++
Sbjct: 403 NYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNI 447

>pdb|1IAL|A Chain A, Importin Alpha, Mouse Length = 453

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 134/293 (45%), Gaps = 24/293 (8%)
Query: 88  IVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPE-HQQIIVDTGALP 146
           +VD GA+PA +  L +P         + H + ++  +ALG +A      + +++  GA+ 
Sbjct: 115 VVDGGAIPAFISLLASP---------HAH-ISEQAVWALGNIAGDGSAFRDLVIKHGAID 164
Query: 147 HLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVD 206
            L++LL        S    G +R     ++NL            VE  +P LV LL   D
Sbjct: 165 PLLALLAVPDL---STLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHND 221
Query: 207 VKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSS 266
            +V   +  A+  L    +E  +++V+   +P LV +L + +  +   A+  IGN+V  +
Sbjct: 222 PEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT 281
Query: 267 PSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIE 326
               ++VI AGAL     LL++  +  ++EA   +    A   +    +V  G V  L+ 
Sbjct: 282 DEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVG 341
Query: 327 MLQSPDSQLKEMSAFAL------GRLAQDTHNQAGIAQDGGILPLLKLLDSKN 373
           +L   D + ++ +A+A+      G + Q  +    +   G I PL+ LL +K+
Sbjct: 342 VLSKADFKTQKEAAWAITNYTSGGTVEQIVY----LVHCGIIEPLMNLLSAKD 390

>pdb|1IAL|A Chain A, Importin Alpha, Mouse Length = 453

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 72/343 (20%), Positives = 141/343 (41%), Gaps = 30/343 (8%)
Query: 139 IVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDG-IPP 197
           I+  G +P  VS L +          S +   +A A+TN+A   +  +T+  V+ G IP 
Sbjct: 72  IIRAGLIPKFVSFLGKTD-------CSPIQFESAWALTNIASGTSE-QTKAVVDGGAIPA 123
Query: 198 LVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVG 257
            + LL      +   A  AL  +A      + L+++  A+  L+ +L   D S    A G
Sbjct: 124 FISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTL--ACG 181
Query: 258 VIGNLVHSSPSIKKEVILAGALQPV-------IGLLSSSCSESKREAALLLGQFAAADSN 310
            + NL  +  ++ +    A  L  V       + LL  +  E   ++   +       + 
Sbjct: 182 YLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNE 241
Query: 311 SKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLL-KLL 369
               +V++G V  L+++L + +  +   +  A+G +   T  Q     D G L +   LL
Sbjct: 242 RIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL 301
Query: 370 DSKNGSLQHNAAFALYGL-ADNEDNVADLVRVGGVQ----KLQDGEFTVQP------TKD 418
            +   ++Q  A + +  + A  +D +  +V  G V      L   +F  Q       T  
Sbjct: 302 TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNY 361
Query: 419 CVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHL 461
               T++++   VH  ++  L+ LL   D  + + +  A++++
Sbjct: 362 TSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNI 404

>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex Length = 510

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 134/293 (45%), Gaps = 24/293 (8%)
Query: 88  IVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPE-HQQIIVDTGALP 146
           +VD GA+PA +  L +P         + H + ++  +ALG +A      + +++  GA+ 
Sbjct: 139 VVDGGAIPAFISLLASP---------HAH-ISEQAVWALGNIAGDGSAFRDLVIKHGAID 188
Query: 147 HLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVD 206
            L++LL        S    G +R     ++NL            VE  +P LV LL   D
Sbjct: 189 PLLALLAVPDL---STLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHND 245
Query: 207 VKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSS 266
            +V   +  A+  L    +E  +++V+   +P LV +L + +  +   A+  IGN+V  +
Sbjct: 246 PEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT 305
Query: 267 PSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIE 326
               ++VI AGAL     LL++  +  ++EA   +    A   +    +V  G V  L+ 
Sbjct: 306 DEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVG 365
Query: 327 MLQSPDSQLKEMSAFAL------GRLAQDTHNQAGIAQDGGILPLLKLLDSKN 373
           +L   D + ++ +A+A+      G + Q  +    +   G I PL+ LL +K+
Sbjct: 366 VLSKADFKTQKEAAWAITNYTSGGTVEQIVY----LVHCGIIEPLMNLLSAKD 414

>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex Length = 510

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 72/343 (20%), Positives = 141/343 (41%), Gaps = 30/343 (8%)
Query: 139 IVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDG-IPP 197
           I+  G +P  VS L +          S +   +A A+TN+A   +  +T+  V+ G IP 
Sbjct: 96  IIRAGLIPKFVSFLGKTD-------CSPIQFESAWALTNIASGTSE-QTKAVVDGGAIPA 147
Query: 198 LVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVG 257
            + LL      +   A  AL  +A      + L+++  A+  L+ +L   D S    A G
Sbjct: 148 FISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTL--ACG 205
Query: 258 VIGNLVHSSPSIKKEVILAGALQPV-------IGLLSSSCSESKREAALLLGQFAAADSN 310
            + NL  +  ++ +    A  L  V       + LL  +  E   ++   +       + 
Sbjct: 206 YLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNE 265
Query: 311 SKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLL-KLL 369
               +V++G V  L+++L + +  +   +  A+G +   T  Q     D G L +   LL
Sbjct: 266 RIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL 325
Query: 370 DSKNGSLQHNAAFALYGL-ADNEDNVADLVRVGGVQ----KLQDGEFTVQP------TKD 418
            +   ++Q  A + +  + A  +D +  +V  G V      L   +F  Q       T  
Sbjct: 326 TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNY 385
Query: 419 CVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHL 461
               T++++   VH  ++  L+ LL   D  + + +  A++++
Sbjct: 386 TSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNI 428

>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide Complex Length = 460

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 134/293 (45%), Gaps = 24/293 (8%)
Query: 88  IVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPE-HQQIIVDTGALP 146
           +VD GA+PA +  L +P         + H + ++  +ALG +A      + +++  GA+ 
Sbjct: 89  VVDGGAIPAFISLLASP---------HAH-ISEQAVWALGNIAGDGSAFRDLVIKHGAID 138
Query: 147 HLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVD 206
            L++LL        S    G +R     ++NL            VE  +P LV LL   D
Sbjct: 139 PLLALLAVPDL---STLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHND 195
Query: 207 VKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSS 266
            +V   +  A+  L    +E  +++V+   +P LV +L + +  +   A+  IGN+V  +
Sbjct: 196 PEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT 255
Query: 267 PSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIE 326
               ++VI AGAL     LL++  +  ++EA   +    A   +    +V  G V  L+ 
Sbjct: 256 DEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVG 315
Query: 327 MLQSPDSQLKEMSAFAL------GRLAQDTHNQAGIAQDGGILPLLKLLDSKN 373
           +L   D + ++ +A+A+      G + Q  +    +   G I PL+ LL +K+
Sbjct: 316 VLSKADFKTQKEAAWAITNYTSGGTVEQIVY----LVHCGIIEPLMNLLSAKD 364

>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide Complex Length = 460

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 72/343 (20%), Positives = 141/343 (41%), Gaps = 30/343 (8%)
Query: 139 IVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDG-IPP 197
           I+  G +P  VS L +          S +   +A A+TN+A   +  +T+  V+ G IP 
Sbjct: 46  IIRAGLIPKFVSFLGKTD-------CSPIQFESAWALTNIASGTSE-QTKAVVDGGAIPA 97
Query: 198 LVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVG 257
            + LL      +   A  AL  +A      + L+++  A+  L+ +L   D S    A G
Sbjct: 98  FISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTL--ACG 155
Query: 258 VIGNLVHSSPSIKKEVILAGALQPV-------IGLLSSSCSESKREAALLLGQFAAADSN 310
            + NL  +  ++ +    A  L  V       + LL  +  E   ++   +       + 
Sbjct: 156 YLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNE 215
Query: 311 SKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLL-KLL 369
               +V++G V  L+++L + +  +   +  A+G +   T  Q     D G L +   LL
Sbjct: 216 RIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL 275
Query: 370 DSKNGSLQHNAAFALYGL-ADNEDNVADLVRVGGVQ----KLQDGEFTVQP------TKD 418
            +   ++Q  A + +  + A  +D +  +V  G V      L   +F  Q       T  
Sbjct: 276 TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNY 335
Query: 419 CVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHL 461
               T++++   VH  ++  L+ LL   D  + + +  A++++
Sbjct: 336 TSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNI 378

>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls Length = 496

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 134/293 (45%), Gaps = 24/293 (8%)
Query: 88  IVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPE-HQQIIVDTGALP 146
           +VD GA+PA +  L +P         + H + ++  +ALG +A      + +++  GA+ 
Sbjct: 125 VVDGGAIPAFISLLASP---------HAH-ISEQAVWALGNIAGDGSAFRDLVIKHGAID 174
Query: 147 HLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVD 206
            L++LL        S    G +R     ++NL            VE  +P LV LL   D
Sbjct: 175 PLLALLAVPDL---STLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHND 231
Query: 207 VKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSS 266
            +V   +  A+  L    +E  +++V+   +P LV +L + +  +   A+  IGN+V  +
Sbjct: 232 PEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT 291
Query: 267 PSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIE 326
               ++VI AGAL     LL++  +  ++EA   +    A   +    +V  G V  L+ 
Sbjct: 292 DEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVG 351
Query: 327 MLQSPDSQLKEMSAFAL------GRLAQDTHNQAGIAQDGGILPLLKLLDSKN 373
           +L   D + ++ +A+A+      G + Q  +    +   G I PL+ LL +K+
Sbjct: 352 VLSKADFKTQKEAAWAITNYTSGGTVEQIVY----LVHCGIIEPLMNLLSAKD 400

>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls Length = 496

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 72/343 (20%), Positives = 141/343 (41%), Gaps = 30/343 (8%)
Query: 139 IVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDG-IPP 197
           I+  G +P  VS L +          S +   +A A+TN+A   +  +T+  V+ G IP 
Sbjct: 82  IIRAGLIPKFVSFLGKTD-------CSPIQFESAWALTNIASGTSE-QTKAVVDGGAIPA 133
Query: 198 LVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVG 257
            + LL      +   A  AL  +A      + L+++  A+  L+ +L   D S    A G
Sbjct: 134 FISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTL--ACG 191
Query: 258 VIGNLVHSSPSIKKEVILAGALQPV-------IGLLSSSCSESKREAALLLGQFAAADSN 310
            + NL  +  ++ +    A  L  V       + LL  +  E   ++   +       + 
Sbjct: 192 YLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNE 251
Query: 311 SKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLL-KLL 369
               +V++G V  L+++L + +  +   +  A+G +   T  Q     D G L +   LL
Sbjct: 252 RIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL 311
Query: 370 DSKNGSLQHNAAFALYGL-ADNEDNVADLVRVGGVQ----KLQDGEFTVQP------TKD 418
            +   ++Q  A + +  + A  +D +  +V  G V      L   +F  Q       T  
Sbjct: 312 TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNY 371
Query: 419 CVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHL 461
               T++++   VH  ++  L+ LL   D  + + +  A++++
Sbjct: 372 TSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNI 414

>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With Importin-Alpha Length = 422

Iteration: 1
 Score = 70.9 bits (172), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 134/293 (45%), Gaps = 24/293 (8%)
Query: 88  IVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPE-HQQIIVDTGALP 146
           +VD GA+PA +  L +P         + H + ++  +ALG +A      + +++  GA+ 
Sbjct: 84  VVDGGAIPAFISLLASP---------HAH-ISEQAVWALGNIAGDGSAFRDLVIKHGAID 133
Query: 147 HLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVD 206
            L++LL        S    G +R     ++NL            VE  +P LV LL   D
Sbjct: 134 PLLALLAVPDL---STLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHND 190
Query: 207 VKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSS 266
            +V   +  A+  L    +E  +++V+   +P LV +L + +  +   A+  IGN+V  +
Sbjct: 191 PEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT 250
Query: 267 PSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIE 326
               ++VI AGAL     LL++  +  ++EA   +    A   +    +V  G V  L+ 
Sbjct: 251 DEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVG 310
Query: 327 MLQSPDSQLKEMSAFAL------GRLAQDTHNQAGIAQDGGILPLLKLLDSKN 373
           +L   D + ++ +A+A+      G + Q  +    +   G I PL+ LL +K+
Sbjct: 311 VLSKADFKTQKEAAWAITNYTSGGTVEQIVY----LVHCGIIEPLMNLLSAKD 359

>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With Importin-Alpha Length = 422

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 72/343 (20%), Positives = 141/343 (41%), Gaps = 30/343 (8%)
Query: 139 IVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDG-IPP 197
           I+  G +P  VS L +          S +   +A A+TN+A   +  +T+  V+ G IP 
Sbjct: 41  IIRAGLIPKFVSFLGKTD-------CSPIQFESAWALTNIASGTSE-QTKAVVDGGAIPA 92
Query: 198 LVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVG 257
            + LL      +   A  AL  +A      + L+++  A+  L+ +L   D S    A G
Sbjct: 93  FISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTL--ACG 150
Query: 258 VIGNLVHSSPSIKKEVILAGALQPV-------IGLLSSSCSESKREAALLLGQFAAADSN 310
            + NL  +  ++ +    A  L  V       + LL  +  E   ++   +       + 
Sbjct: 151 YLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNE 210
Query: 311 SKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLL-KLL 369
               +V++G V  L+++L + +  +   +  A+G +   T  Q     D G L +   LL
Sbjct: 211 RIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL 270
Query: 370 DSKNGSLQHNAAFALYGL-ADNEDNVADLVRVGGVQ----KLQDGEFTVQP------TKD 418
            +   ++Q  A + +  + A  +D +  +V  G V      L   +F  Q       T  
Sbjct: 271 TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNY 330
Query: 419 CVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHL 461
               T++++   VH  ++  L+ LL   D  + + +  A++++
Sbjct: 331 TSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNI 373

>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide Complex Length = 466

Iteration: 1
 Score = 70.9 bits (172), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 134/293 (45%), Gaps = 24/293 (8%)
Query: 88  IVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPE-HQQIIVDTGALP 146
           +VD GA+PA +  L +P         + H + ++  +ALG +A      + +++  GA+ 
Sbjct: 95  VVDGGAIPAFISLLASP---------HAH-ISEQAVWALGNIAGDGSAFRDLVIKHGAID 144
Query: 147 HLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVD 206
            L++LL        S    G +R     ++NL            VE  +P LV LL   D
Sbjct: 145 PLLALLAVPDL---STLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHND 201
Query: 207 VKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSS 266
            +V   +  A+  L    +E  +++V+   +P LV +L + +  +   A+  IGN+V  +
Sbjct: 202 PEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT 261
Query: 267 PSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIE 326
               ++VI AGAL     LL++  +  ++EA   +    A   +    +V  G V  L+ 
Sbjct: 262 DEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVG 321
Query: 327 MLQSPDSQLKEMSAFAL------GRLAQDTHNQAGIAQDGGILPLLKLLDSKN 373
           +L   D + ++ +A+A+      G + Q  +    +   G I PL+ LL +K+
Sbjct: 322 VLSKADFKTQKEAAWAITNYTSGGTVEQIVY----LVHCGIIEPLMNLLSAKD 370

>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide Complex Length = 466

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 72/343 (20%), Positives = 141/343 (41%), Gaps = 30/343 (8%)
Query: 139 IVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDG-IPP 197
           I+  G +P  VS L +          S +   +A A+TN+A   +  +T+  V+ G IP 
Sbjct: 52  IIRAGLIPKFVSFLGKTD-------CSPIQFESAWALTNIASGTSE-QTKAVVDGGAIPA 103
Query: 198 LVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVG 257
            + LL      +   A  AL  +A      + L+++  A+  L+ +L   D S    A G
Sbjct: 104 FISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTL--ACG 161
Query: 258 VIGNLVHSSPSIKKEVILAGALQPV-------IGLLSSSCSESKREAALLLGQFAAADSN 310
            + NL  +  ++ +    A  L  V       + LL  +  E   ++   +       + 
Sbjct: 162 YLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNE 221
Query: 311 SKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLL-KLL 369
               +V++G V  L+++L + +  +   +  A+G +   T  Q     D G L +   LL
Sbjct: 222 RIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL 281
Query: 370 DSKNGSLQHNAAFALYGL-ADNEDNVADLVRVGGVQ----KLQDGEFTVQP------TKD 418
            +   ++Q  A + +  + A  +D +  +V  G V      L   +F  Q       T  
Sbjct: 282 TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNY 341
Query: 419 CVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHL 461
               T++++   VH  ++  L+ LL   D  + + +  A++++
Sbjct: 342 TSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNI 384

>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex Length = 510

Iteration: 1
 Score = 70.9 bits (172), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 134/293 (45%), Gaps = 24/293 (8%)
Query: 88  IVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPE-HQQIIVDTGALP 146
           +VD GA+PA +  L +P         + H + ++  +ALG +A      + +++  GA+ 
Sbjct: 139 VVDGGAIPAFISLLASP---------HAH-ISEQAVWALGNIAGDGSAFRDLVIKHGAID 188
Query: 147 HLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVD 206
            L++LL        S    G +R     ++NL            VE  +P LV LL   D
Sbjct: 189 PLLALLAVPDL---STLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHND 245
Query: 207 VKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSS 266
            +V   +  A+  L    +E  +++V+   +P LV +L + +  +   A+  IGN+V  +
Sbjct: 246 PEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT 305
Query: 267 PSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIE 326
               ++VI AGAL     LL++  +  ++EA   +    A   +    +V  G V  L+ 
Sbjct: 306 DEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVG 365
Query: 327 MLQSPDSQLKEMSAFAL------GRLAQDTHNQAGIAQDGGILPLLKLLDSKN 373
           +L   D + ++ +A+A+      G + Q  +    +   G I PL+ LL +K+
Sbjct: 366 VLSKADFKTQKEAAWAITNYTSGGTVEQIVY----LVHCGIIEPLMNLLSAKD 414

>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex Length = 510

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 72/343 (20%), Positives = 141/343 (41%), Gaps = 30/343 (8%)
Query: 139 IVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDG-IPP 197
           I+  G +P  VS L +          S +   +A A+TN+A   +  +T+  V+ G IP 
Sbjct: 96  IIRAGLIPKFVSFLGKTD-------CSPIQFESAWALTNIASGTSE-QTKAVVDGGAIPA 147
Query: 198 LVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVG 257
            + LL      +   A  AL  +A      + L+++  A+  L+ +L   D S    A G
Sbjct: 148 FISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTL--ACG 205
Query: 258 VIGNLVHSSPSIKKEVILAGALQPV-------IGLLSSSCSESKREAALLLGQFAAADSN 310
            + NL  +  ++ +    A  L  V       + LL  +  E   ++   +       + 
Sbjct: 206 YLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNE 265
Query: 311 SKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLL-KLL 369
               +V++G V  L+++L + +  +   +  A+G +   T  Q     D G L +   LL
Sbjct: 266 RIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL 325
Query: 370 DSKNGSLQHNAAFALYGL-ADNEDNVADLVRVGGVQ----KLQDGEFTVQP------TKD 418
            +   ++Q  A + +  + A  +D +  +V  G V      L   +F  Q       T  
Sbjct: 326 TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNY 385
Query: 419 CVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHL 461
               T++++   VH  ++  L+ LL   D  + + +  A++++
Sbjct: 386 TSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNI 428

>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex Length = 424

Iteration: 1
 Score = 70.9 bits (172), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 134/293 (45%), Gaps = 24/293 (8%)
Query: 88  IVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPE-HQQIIVDTGALP 146
           +VD GA+PA +  L +P         + H + ++  +ALG +A      + +++  GA+ 
Sbjct: 84  VVDGGAIPAFISLLASP---------HAH-ISEQAVWALGNIAGDGSAFRDLVIKHGAID 133
Query: 147 HLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVD 206
            L++LL        S    G +R     ++NL            VE  +P LV LL   D
Sbjct: 134 PLLALLAVPDL---STLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHND 190
Query: 207 VKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSS 266
            +V   +  A+  L    +E  +++V+   +P LV +L + +  +   A+  IGN+V  +
Sbjct: 191 PEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT 250
Query: 267 PSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIE 326
               ++VI AGAL     LL++  +  ++EA   +    A   +    +V  G V  L+ 
Sbjct: 251 DEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVG 310
Query: 327 MLQSPDSQLKEMSAFAL------GRLAQDTHNQAGIAQDGGILPLLKLLDSKN 373
           +L   D + ++ +A+A+      G + Q  +    +   G I PL+ LL +K+
Sbjct: 311 VLSKADFKTQKEAAWAITNYTSGGTVEQIVY----LVHCGIIEPLMNLLSAKD 359

>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex Length = 424

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 72/343 (20%), Positives = 141/343 (41%), Gaps = 30/343 (8%)
Query: 139 IVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDG-IPP 197
           I+  G +P  VS L +          S +   +A A+TN+A   +  +T+  V+ G IP 
Sbjct: 41  IIRAGLIPKFVSFLGKTD-------CSPIQFESAWALTNIASGTSE-QTKAVVDGGAIPA 92
Query: 198 LVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVG 257
            + LL      +   A  AL  +A      + L+++  A+  L+ +L   D S    A G
Sbjct: 93  FISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTL--ACG 150
Query: 258 VIGNLVHSSPSIKKEVILAGALQPV-------IGLLSSSCSESKREAALLLGQFAAADSN 310
            + NL  +  ++ +    A  L  V       + LL  +  E   ++   +       + 
Sbjct: 151 YLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNE 210
Query: 311 SKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLL-KLL 369
               +V++G V  L+++L + +  +   +  A+G +   T  Q     D G L +   LL
Sbjct: 211 RIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL 270
Query: 370 DSKNGSLQHNAAFALYGL-ADNEDNVADLVRVGGVQ----KLQDGEFTVQP------TKD 418
            +   ++Q  A + +  + A  +D +  +V  G V      L   +F  Q       T  
Sbjct: 271 TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNY 330
Query: 419 CVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHL 461
               T++++   VH  ++  L+ LL   D  + + +  A++++
Sbjct: 331 TSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNI 373

>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine Encephalitis Virus Capsid Protein Nls And Importin Alpha Length = 426

Iteration: 1
 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 134/293 (45%), Gaps = 24/293 (8%)
Query: 88  IVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPE-HQQIIVDTGALP 146
           +VD GA+PA +  L +P         + H + ++  +ALG +A      + +++  GA+ 
Sbjct: 88  VVDGGAIPAFISLLASP---------HAH-ISEQAVWALGNIAGDGSAFRDLVIKHGAID 137
Query: 147 HLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVD 206
            L++LL        S    G +R     ++NL            VE  +P LV LL   D
Sbjct: 138 PLLALLAVPDL---STLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHND 194
Query: 207 VKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSS 266
            +V   +  A+  L    +E  +++V+   +P LV +L + +  +   A+  IGN+V  +
Sbjct: 195 PEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT 254
Query: 267 PSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIE 326
               ++VI AGAL     LL++  +  ++EA   +    A   +    +V  G V  L+ 
Sbjct: 255 DEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVG 314
Query: 327 MLQSPDSQLKEMSAFAL------GRLAQDTHNQAGIAQDGGILPLLKLLDSKN 373
           +L   D + ++ +A+A+      G + Q  +    +   G I PL+ LL +K+
Sbjct: 315 VLSKADFKTQKEAAWAITNYTSGGTVEQIVY----LVHCGIIEPLMNLLSAKD 363

>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine Encephalitis Virus Capsid Protein Nls And Importin Alpha Length = 426

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 72/343 (20%), Positives = 141/343 (41%), Gaps = 30/343 (8%)
Query: 139 IVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDG-IPP 197
           I+  G +P  VS L +          S +   +A A+TN+A   +  +T+  V+ G IP 
Sbjct: 45  IIRAGLIPKFVSFLGKTD-------CSPIQFESAWALTNIASGTSE-QTKAVVDGGAIPA 96
Query: 198 LVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVG 257
            + LL      +   A  AL  +A      + L+++  A+  L+ +L   D S    A G
Sbjct: 97  FISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTL--ACG 154
Query: 258 VIGNLVHSSPSIKKEVILAGALQPV-------IGLLSSSCSESKREAALLLGQFAAADSN 310
            + NL  +  ++ +    A  L  V       + LL  +  E   ++   +       + 
Sbjct: 155 YLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNE 214
Query: 311 SKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLL-KLL 369
               +V++G V  L+++L + +  +   +  A+G +   T  Q     D G L +   LL
Sbjct: 215 RIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL 274
Query: 370 DSKNGSLQHNAAFALYGL-ADNEDNVADLVRVGGVQ----KLQDGEFTVQP------TKD 418
            +   ++Q  A + +  + A  +D +  +V  G V      L   +F  Q       T  
Sbjct: 275 TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNY 334
Query: 419 CVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHL 461
               T++++   VH  ++  L+ LL   D  + + +  A++++
Sbjct: 335 TSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNI 377

>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex Length = 509

Iteration: 1
 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 134/293 (45%), Gaps = 24/293 (8%)
Query: 88  IVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPE-HQQIIVDTGALP 146
           +VD GA+PA +  L +P         + H + ++  +ALG +A      + +++  GA+ 
Sbjct: 139 VVDGGAIPAFISLLASP---------HAH-ISEQAVWALGNIAGDGSAFRDLVIKHGAID 188
Query: 147 HLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVD 206
            L++LL        S    G +R     ++NL            VE  +P LV LL   D
Sbjct: 189 PLLALLAVPDL---STLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHND 245
Query: 207 VKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSS 266
            +V   +  A+  L    +E  +++V+   +P LV +L + +  +   A+  IGN+V  +
Sbjct: 246 PEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT 305
Query: 267 PSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIE 326
               ++VI AGAL     LL++  +  ++EA   +    A   +    +V  G V  L+ 
Sbjct: 306 DEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVG 365
Query: 327 MLQSPDSQLKEMSAFAL------GRLAQDTHNQAGIAQDGGILPLLKLLDSKN 373
           +L   D + ++ +A+A+      G + Q  +    +   G I PL+ LL +K+
Sbjct: 366 VLSKADFKTQKEAAWAITNYTSGGTVEQIVY----LVHCGIIEPLMNLLSAKD 414

>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex Length = 509

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 72/343 (20%), Positives = 141/343 (41%), Gaps = 30/343 (8%)
Query: 139 IVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDG-IPP 197
           I+  G +P  VS L +          S +   +A A+TN+A   +  +T+  V+ G IP 
Sbjct: 96  IIRAGLIPKFVSFLGKTD-------CSPIQFESAWALTNIASGTSE-QTKAVVDGGAIPA 147
Query: 198 LVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVG 257
            + LL      +   A  AL  +A      + L+++  A+  L+ +L   D S    A G
Sbjct: 148 FISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTL--ACG 205
Query: 258 VIGNLVHSSPSIKKEVILAGALQPV-------IGLLSSSCSESKREAALLLGQFAAADSN 310
            + NL  +  ++ +    A  L  V       + LL  +  E   ++   +       + 
Sbjct: 206 YLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNE 265
Query: 311 SKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLL-KLL 369
               +V++G V  L+++L + +  +   +  A+G +   T  Q     D G L +   LL
Sbjct: 266 RIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL 325
Query: 370 DSKNGSLQHNAAFALYGL-ADNEDNVADLVRVGGVQ----KLQDGEFTVQP------TKD 418
            +   ++Q  A + +  + A  +D +  +V  G V      L   +F  Q       T  
Sbjct: 326 TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNY 385
Query: 419 CVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHL 461
               T++++   VH  ++  L+ LL   D  + + +  A++++
Sbjct: 386 TSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNI 428

>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex Length = 427

Iteration: 1
 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 134/293 (45%), Gaps = 24/293 (8%)
Query: 88  IVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPE-HQQIIVDTGALP 146
           +VD GA+PA +  L +P         + H + ++  +ALG +A      + +++  GA+ 
Sbjct: 89  VVDGGAIPAFISLLASP---------HAH-ISEQAVWALGNIAGDGSAFRDLVIKHGAID 138
Query: 147 HLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVD 206
            L++LL        S    G +R     ++NL            VE  +P LV LL   D
Sbjct: 139 PLLALLAVPDL---STLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHND 195
Query: 207 VKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSS 266
            +V   +  A+  L    +E  +++V+   +P LV +L + +  +   A+  IGN+V  +
Sbjct: 196 PEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT 255
Query: 267 PSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIE 326
               ++VI AGAL     LL++  +  ++EA   +    A   +    +V  G V  L+ 
Sbjct: 256 DEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVG 315
Query: 327 MLQSPDSQLKEMSAFAL------GRLAQDTHNQAGIAQDGGILPLLKLLDSKN 373
           +L   D + ++ +A+A+      G + Q  +    +   G I PL+ LL +K+
Sbjct: 316 VLSKADFKTQKEAAWAITNYTSGGTVEQIVY----LVHCGIIEPLMNLLSAKD 364

>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex Length = 427

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 72/343 (20%), Positives = 141/343 (41%), Gaps = 30/343 (8%)
Query: 139 IVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDG-IPP 197
           I+  G +P  VS L +          S +   +A A+TN+A   +  +T+  V+ G IP 
Sbjct: 46  IIRAGLIPKFVSFLGKTD-------CSPIQFESAWALTNIASGTSE-QTKAVVDGGAIPA 97
Query: 198 LVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVG 257
            + LL      +   A  AL  +A      + L+++  A+  L+ +L   D S    A G
Sbjct: 98  FISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTL--ACG 155
Query: 258 VIGNLVHSSPSIKKEVILAGALQPV-------IGLLSSSCSESKREAALLLGQFAAADSN 310
            + NL  +  ++ +    A  L  V       + LL  +  E   ++   +       + 
Sbjct: 156 YLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNE 215
Query: 311 SKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLL-KLL 369
               +V++G V  L+++L + +  +   +  A+G +   T  Q     D G L +   LL
Sbjct: 216 RIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL 275
Query: 370 DSKNGSLQHNAAFALYGL-ADNEDNVADLVRVGGVQ----KLQDGEFTVQP------TKD 418
            +   ++Q  A + +  + A  +D +  +V  G V      L   +F  Q       T  
Sbjct: 276 TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNY 335
Query: 419 CVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHL 461
               T++++   VH  ++  L+ LL   D  + + +  A++++
Sbjct: 336 TSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNI 378

>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical Plscr1-Nls Length = 428

Iteration: 1
 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 134/293 (45%), Gaps = 24/293 (8%)
Query: 88  IVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPE-HQQIIVDTGALP 146
           +VD GA+PA +  L +P         + H + ++  +ALG +A      + +++  GA+ 
Sbjct: 89  VVDGGAIPAFISLLASP---------HAH-ISEQAVWALGNIAGDGSAFRDLVIKHGAID 138
Query: 147 HLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVD 206
            L++LL        S    G +R     ++NL            VE  +P LV LL   D
Sbjct: 139 PLLALLAVPDL---STLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHND 195
Query: 207 VKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSS 266
            +V   +  A+  L    +E  +++V+   +P LV +L + +  +   A+  IGN+V  +
Sbjct: 196 PEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT 255
Query: 267 PSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIE 326
               ++VI AGAL     LL++  +  ++EA   +    A   +    +V  G V  L+ 
Sbjct: 256 DEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVG 315
Query: 327 MLQSPDSQLKEMSAFAL------GRLAQDTHNQAGIAQDGGILPLLKLLDSKN 373
           +L   D + ++ +A+A+      G + Q  +    +   G I PL+ LL +K+
Sbjct: 316 VLSKADFKTQKEAAWAITNYTSGGTVEQIVY----LVHCGIIEPLMNLLSAKD 364

>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical Plscr1-Nls Length = 428

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 72/343 (20%), Positives = 141/343 (41%), Gaps = 30/343 (8%)
Query: 139 IVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDG-IPP 197
           I+  G +P  VS L +          S +   +A A+TN+A   +  +T+  V+ G IP 
Sbjct: 46  IIRAGLIPKFVSFLGKTD-------CSPIQFESAWALTNIASGTSE-QTKAVVDGGAIPA 97
Query: 198 LVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVG 257
            + LL      +   A  AL  +A      + L+++  A+  L+ +L   D S    A G
Sbjct: 98  FISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTL--ACG 155
Query: 258 VIGNLVHSSPSIKKEVILAGALQPV-------IGLLSSSCSESKREAALLLGQFAAADSN 310
            + NL  +  ++ +    A  L  V       + LL  +  E   ++   +       + 
Sbjct: 156 YLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNE 215
Query: 311 SKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLL-KLL 369
               +V++G V  L+++L + +  +   +  A+G +   T  Q     D G L +   LL
Sbjct: 216 RIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL 275
Query: 370 DSKNGSLQHNAAFALYGL-ADNEDNVADLVRVGGVQ----KLQDGEFTVQP------TKD 418
            +   ++Q  A + +  + A  +D +  +V  G V      L   +F  Q       T  
Sbjct: 276 TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNY 335
Query: 419 CVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHL 461
               T++++   VH  ++  L+ LL   D  + + +  A++++
Sbjct: 336 TSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNI 378

>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls Length = 461

Iteration: 1
 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 134/293 (45%), Gaps = 24/293 (8%)
Query: 88  IVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPE-HQQIIVDTGALP 146
           +VD GA+PA +  L +P         + H + ++  +ALG +A      + +++  GA+ 
Sbjct: 123 VVDGGAIPAFISLLASP---------HAH-ISEQAVWALGNIAGDGSAFRDLVIKHGAID 172
Query: 147 HLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVD 206
            L++LL        S    G +R     ++NL            VE  +P LV LL   D
Sbjct: 173 PLLALLAVPDL---STLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHND 229
Query: 207 VKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSS 266
            +V   +  A+  L    +E  +++V+   +P LV +L + +  +   A+  IGN+V  +
Sbjct: 230 PEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT 289
Query: 267 PSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIE 326
               ++VI AGAL     LL++  +  ++EA   +    A   +    +V  G V  L+ 
Sbjct: 290 DEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVG 349
Query: 327 MLQSPDSQLKEMSAFAL------GRLAQDTHNQAGIAQDGGILPLLKLLDSKN 373
           +L   D + ++ +A+A+      G + Q  +    +   G I PL+ LL +K+
Sbjct: 350 VLSKADFKTQKEAAWAITNYTSGGTVEQIVY----LVHCGIIEPLMNLLSAKD 398

>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls Length = 461

Iteration: 1
 Score = 42.4 bits (98), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 72/343 (20%), Positives = 141/343 (41%), Gaps = 30/343 (8%)
Query: 139 IVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDG-IPP 197
           I+  G +P  VS L +          S +   +A A+TN+A   +  +T+  V+ G IP 
Sbjct: 80  IIRAGLIPKFVSFLGKTD-------CSPIQFESAWALTNIASGTSE-QTKAVVDGGAIPA 131
Query: 198 LVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVG 257
            + LL      +   A  AL  +A      + L+++  A+  L+ +L   D S    A G
Sbjct: 132 FISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTL--ACG 189
Query: 258 VIGNLVHSSPSIKKEVILAGALQPV-------IGLLSSSCSESKREAALLLGQFAAADSN 310
            + NL  +  ++ +    A  L  V       + LL  +  E   ++   +       + 
Sbjct: 190 YLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNE 249
Query: 311 SKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLL-KLL 369
               +V++G V  L+++L + +  +   +  A+G +   T  Q     D G L +   LL
Sbjct: 250 RIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL 309
Query: 370 DSKNGSLQHNAAFALYGL-ADNEDNVADLVRVGGVQ----KLQDGEFTVQP------TKD 418
            +   ++Q  A + +  + A  +D +  +V  G V      L   +F  Q       T  
Sbjct: 310 TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNY 369
Query: 419 CVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHL 461
               T++++   VH  ++  L+ LL   D  + + +  A++++
Sbjct: 370 TSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNI 412

>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex Length = 427

Iteration: 1
 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 134/293 (45%), Gaps = 24/293 (8%)
Query: 88  IVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPE-HQQIIVDTGALP 146
           +VD GA+PA +  L +P         + H + ++  +ALG +A      + +++  GA+ 
Sbjct: 88  VVDGGAIPAFISLLASP---------HAH-ISEQAVWALGNIAGDGSAFRDLVIKHGAID 137
Query: 147 HLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVD 206
            L++LL        S    G +R     ++NL            VE  +P LV LL   D
Sbjct: 138 PLLALLAVPDL---STLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHND 194
Query: 207 VKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSS 266
            +V   +  A+  L    +E  +++V+   +P LV +L + +  +   A+  IGN+V  +
Sbjct: 195 PEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT 254
Query: 267 PSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIE 326
               ++VI AGAL     LL++  +  ++EA   +    A   +    +V  G V  L+ 
Sbjct: 255 DEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVG 314
Query: 327 MLQSPDSQLKEMSAFAL------GRLAQDTHNQAGIAQDGGILPLLKLLDSKN 373
           +L   D + ++ +A+A+      G + Q  +    +   G I PL+ LL +K+
Sbjct: 315 VLSKADFKTQKEAAWAITNYTSGGTVEQIVY----LVHCGIIEPLMNLLSAKD 363

>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex Length = 427

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 72/343 (20%), Positives = 141/343 (41%), Gaps = 30/343 (8%)
Query: 139 IVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDG-IPP 197
           I+  G +P  VS L +          S +   +A A+TN+A   +  +T+  V+ G IP 
Sbjct: 45  IIRAGLIPKFVSFLGKTD-------CSPIQFESAWALTNIASGTSE-QTKAVVDGGAIPA 96
Query: 198 LVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVG 257
            + LL      +   A  AL  +A      + L+++  A+  L+ +L   D S    A G
Sbjct: 97  FISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTL--ACG 154
Query: 258 VIGNLVHSSPSIKKEVILAGALQPV-------IGLLSSSCSESKREAALLLGQFAAADSN 310
            + NL  +  ++ +    A  L  V       + LL  +  E   ++   +       + 
Sbjct: 155 YLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNE 214
Query: 311 SKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLL-KLL 369
               +V++G V  L+++L + +  +   +  A+G +   T  Q     D G L +   LL
Sbjct: 215 RIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL 274
Query: 370 DSKNGSLQHNAAFALYGL-ADNEDNVADLVRVGGVQ----KLQDGEFTVQP------TKD 418
            +   ++Q  A + +  + A  +D +  +V  G V      L   +F  Q       T  
Sbjct: 275 TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNY 334
Query: 419 CVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHL 461
               T++++   VH  ++  L+ LL   D  + + +  A++++
Sbjct: 335 TSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNI 377

>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex. Length = 467

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 130/293 (44%), Gaps = 24/293 (8%)
Query: 88  IVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPE-HQQIIVDTGALP 146
           +VD GA+PA +  L +P         + H + ++  +ALG +A      + +++  GA+ 
Sbjct: 90  VVDGGAIPAFISLLASP---------HAH-ISEQAVWALGNIAGDGSVFRDLVIKYGAVD 139
Query: 147 HLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVD 206
            L++LL        S    G +R     ++NL            VE  +P LV LL   D
Sbjct: 140 PLLALLAVPDM---SSLACGYLRNLTWTLSNLCRNKNPAPPIDAVEQILPTLVRLLHHDD 196
Query: 207 VKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSS 266
            +V      A+  L    +E   ++V+   +P LV +L + +  +   A+  IGN+V  +
Sbjct: 197 PEVLADTCWAISYLTDGPNERIGMVVKTGVVPQLVKLLGASELPIVTPALRAIGNIVTGT 256
Query: 267 PSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIE 326
               + VI AGAL     LL++  +  ++EA   +    A   +    +V  G V  L+ 
Sbjct: 257 DEQTQVVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVS 316
Query: 327 MLQSPDSQLKEMSAFAL------GRLAQDTHNQAGIAQDGGILPLLKLLDSKN 373
           +L   D + ++ + +A+      G + Q  +    +   G I PL+ LL +K+
Sbjct: 317 VLSKADFKTQKEAVWAVTNYTSGGTVEQIVY----LVHCGIIEPLMNLLTAKD 365

>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex. Length = 467

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 82/185 (44%), Gaps = 9/185 (4%)
Query: 195 IPPLVELLKFVDVK-VQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHF 253
           IP  V  L   D   +Q  +A AL  +A    E  K +V+  A+P  + +L S  A +  
Sbjct: 53  IPKFVSFLGRTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISE 112
Query: 254 EAVGVIGNLVHSSPSIKKEVILAGALQPVIGLL------SSSCSESKREAALLLGQFAAA 307
           +AV  +GN+       +  VI  GA+ P++ LL      S +C   +     L       
Sbjct: 113 QAVWALGNIAGDGSVFRDLVIKYGAVDPLLALLAVPDMSSLACGYLRNLTWTLSNLCRNK 172
Query: 308 DSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILP-LL 366
           +    +  V++  +  L+ +L   D ++   + +A+  L    + + G+    G++P L+
Sbjct: 173 NPAPPIDAVEQ-ILPTLVRLLHHDDPEVLADTCWAISYLTDGPNERIGMVVKTGVVPQLV 231
Query: 367 KLLDS 371
           KLL +
Sbjct: 232 KLLGA 236

>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii) Length = 210

Iteration: 1
 Score = 65.9 bits (159), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 95/191 (49%), Gaps = 1/191 (0%)
Query: 195 IPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFE 254
           +P +V+ L   D +  ++A   L  +A   +E  + +++  ALP LV +L S +  +  E
Sbjct: 14  LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 255 AVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVH 314
           A+  + N+        + VI AGAL  ++ LLSS   +  +EA   L   A+  +     
Sbjct: 74  ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 133
Query: 315 IVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSK-N 373
           ++  GA+  L+++L SP+ Q+ + + +AL  +A   + Q    ++ G  P L+ L S  N
Sbjct: 134 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGAEPALEQLQSSPN 193
Query: 374 GSLQHNAAFAL 384
             +Q  A  AL
Sbjct: 194 EKIQKEAQEAL 204

>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii) Length = 210

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/194 (27%), Positives = 97/194 (50%), Gaps = 1/194 (0%)
Query: 195 IPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFE 254
           +P +V+ L   D +  ++A   L  +A   +E  + +++  ALP LV +L S +  +  E
Sbjct: 14  LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 255 AVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVH 314
           A+  + N+        + VI AGAL  ++ LLSS   +  +EA   L   A+  +     
Sbjct: 74  ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 133
Query: 315 IVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDS-KN 373
           ++  GA+  L+++L SP+ Q+ + + +AL  +A   + Q    ++ G L  L+ L S +N
Sbjct: 134 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHEN 193
Query: 374 GSLQHNAAFALYGL 387
             +Q  A  AL  L
Sbjct: 194 EKIQKEAQEALEKL 207

>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii) Length = 210

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 95/194 (48%), Gaps = 1/194 (0%)
Query: 195 IPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFE 254
           +P + + L   D++ Q +A      +    +E  + +++  ALP LV +L S +  +  E
Sbjct: 14  LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 255 AVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVH 314
           A+  + N+        + VI AGAL  ++ LLSS   +  +EA   L   A+  +     
Sbjct: 74  ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 133
Query: 315 IVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDS-KN 373
           ++  GA+  L+++L SP+ Q+ + + +AL  +A   + Q    ++ G L  L+ L S +N
Sbjct: 134 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHEN 193
Query: 374 GSLQHNAAFALYGL 387
             +Q  A  AL  L
Sbjct: 194 EKIQKEAQEALEKL 207

>pdb|3HTM|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases: Spopbtb3-Box Length = 172

Iteration: 1
 Score = 63.5 bits (153), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 48/130 (36%), Positives = 67/130 (51%)
Query: 532 NPTLSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMM 591
           N   +D    V G++F AH+  L A S  F A F+   +E     VEI ++   VF+   
Sbjct: 31  NSRFTDCCLCVAGQEFQAHKAILAARSPVFSAXFEHEXEESKKNRVEINDVEPEVFKEXX 90
Query: 592 RFIYTGNVDVSVDIAQDLLRAADQYLLEGLKRLCEYSIAQIISVENIMLMYELSEAYNAT 651
            FIYTG        A DLL AAD+Y LE LK  CE ++   +SVEN   +  L++ ++A 
Sbjct: 91  CFIYTGKAPNLDKXADDLLAAADKYALERLKVXCEDALCSNLSVENAAEILILADLHSAD 150
Query: 652 TLKQSCILFI 661
            LK   + FI
Sbjct: 151 QLKTQAVDFI 160

>pdb|3L6X|A Chain A, Crystal Structure Of P120 Catenin In Complex With E-Cadherin Length = 584

Iteration: 1
 Score = 58.9 bits (141), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 40/113 (35%), Positives = 61/113 (53%), Gaps = 3/113 (2%)
Query: 164 LSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFK 223
           L  V   AA  + +L + N  +KT VR   GIP LV LL     +V   A GAL+ ++F 
Sbjct: 61  LDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFG 120
Query: 224 NDENKKLIVE-CNALPTLVLMLR-SEDASVHFEAVGVIGNLVHSSPSIKKEVI 274
            D++ K+ ++ C+ +P LV +LR + D  +     G + NL  S  SIK E++
Sbjct: 121 RDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNL-SSHDSIKMEIV 172

>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 530

Iteration: 1
 Score = 55.8 bits (133), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 83/414 (20%), Positives = 161/414 (38%), Gaps = 30/414 (7%)
Query: 36  SGATQQDLVQDIRAQIDILNSKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVP 95
           S +  Q     ++ ++  +  + +SD+     + T     +   ++   + +++  G VP
Sbjct: 74  SVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVP 133
Query: 96  ALVEHL-QTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQ-QIIVDTGALPHLVSLLK 153
            LVE + +  P++          ++ E A+AL  +A     Q +++VD  A+P  + LL 
Sbjct: 134 RLVEFMRENQPEM----------LQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLL- 182
Query: 154 QYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAA 213
            Y           V  +A  A+ N+A ++ + +  V   + + P++ L       + R A
Sbjct: 183 -YTGSVE------VKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTA 235
Query: 214 AGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEV 273
              L  L           V   ALPTL  ++ S D     +A   I  L        + V
Sbjct: 236 TWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAV 295
Query: 274 ILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDS 333
           I     + ++ LLS   +  +  A   +G     +      ++  G +  L  +L SP  
Sbjct: 296 IDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKE 355
Query: 334 QLKEMSAFALGRLAQDTHNQAGIAQDGGIL-PLLKLLDSKNGSLQHNAAFALYGLADNED 392
            +K+ + + +  +      Q     D  ++ PL+KLL+      +  A +A+   +    
Sbjct: 356 NIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGL 415
Query: 393 NVADLVRV----GGVQKLQD-----GEFTVQPTKDCVARTLKRLEEKVHGRVLN 437
              D++R     G ++ L D         ++ T D +   LK  E     R LN
Sbjct: 416 QRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLN 469

>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In A Complex With A C-Myc Nls Peptide Length = 423

Iteration: 1
 Score = 55.8 bits (133), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 83/396 (20%), Positives = 154/396 (38%), Gaps = 30/396 (7%)
Query: 54  LNSKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHL-QTPPQLTNAQI 112
           +  + +SD+     + T     +   ++   + +++  G VP LVE + +  P++     
Sbjct: 6   MTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEM----- 60
Query: 113 PYEHEVEKECAFALGLLAVKPEHQ-QIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRA 171
                ++ E A+AL  +A     Q +++VD  A+P  + LL  Y           V  +A
Sbjct: 61  -----LQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLL--YTGSVE------VKEQA 107
Query: 172 ADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLI 231
             A+ N+A ++ + +  V   + + P++ L       + R A   L  L           
Sbjct: 108 IWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWS 167
Query: 232 VECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCS 291
           V   ALPTL  ++ S D     +A   I  L        + VI     + ++ LLS   +
Sbjct: 168 VVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHEST 227
Query: 292 ESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTH 351
             +  A   +G     +      ++  G +  L  +L SP   +K+ + + +  +     
Sbjct: 228 LVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNT 287
Query: 352 NQAGIAQDGGIL-PLLKLLDSKNGSLQHNAAFAL----YGLADNEDNVADLVRVGGVQKL 406
            Q     D  ++ PL+KLL+      +  A +A+     G     D +  LV  G ++ L
Sbjct: 288 EQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPL 347
Query: 407 QD-----GEFTVQPTKDCVARTLKRLEEKVHGRVLN 437
            D         ++ T D +   LK  E     R LN
Sbjct: 348 CDLLEIADNRIIEVTLDALENILKMGEADKEARGLN 383

>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In Complex With A Nup2p N-Terminal Fragment Length = 443

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 83/396 (20%), Positives = 154/396 (38%), Gaps = 30/396 (7%)
Query: 54  LNSKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHL-QTPPQLTNAQI 112
           +  + +SD+     + T     +   ++   + +++  G VP LVE + +  P++     
Sbjct: 5   MTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEM----- 59
Query: 113 PYEHEVEKECAFALGLLAVKPEHQ-QIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRA 171
                ++ E A+AL  +A     Q +++VD  A+P  + LL  Y           V  +A
Sbjct: 60  -----LQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLL--YTGSVE------VKEQA 106
Query: 172 ADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLI 231
             A+ N+A ++ + +  V   + + P++ L       + R A   L  L           
Sbjct: 107 IWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWS 166
Query: 232 VECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCS 291
           V   ALPTL  ++ S D     +A   I  L        + VI     + ++ LLS   +
Sbjct: 167 VVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHEST 226
Query: 292 ESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTH 351
             +  A   +G     +      ++  G +  L  +L SP   +K+ + + +  +     
Sbjct: 227 LVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNT 286
Query: 352 NQAGIAQDGGIL-PLLKLLDSKNGSLQHNAAFAL----YGLADNEDNVADLVRVGGVQKL 406
            Q     D  ++ PL+KLL+      +  A +A+     G     D +  LV  G ++ L
Sbjct: 287 EQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPL 346
Query: 407 QD-----GEFTVQPTKDCVARTLKRLEEKVHGRVLN 437
            D         ++ T D +   LK  E     R LN
Sbjct: 347 CDLLEIADNRIIEVTLDALENILKMGEADKEARGLN 382

>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A Nucleoplasmin Nls Peptide Length = 424

Iteration: 1
 Score = 55.5 bits (132), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 83/396 (20%), Positives = 154/396 (38%), Gaps = 30/396 (7%)
Query: 54  LNSKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHL-QTPPQLTNAQI 112
           +  + +SD+     + T     +   ++   + +++  G VP LVE + +  P++     
Sbjct: 6   MTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEM----- 60
Query: 113 PYEHEVEKECAFALGLLAVKPEHQ-QIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRA 171
                ++ E A+AL  +A     Q +++VD  A+P  + LL  Y           V  +A
Sbjct: 61  -----LQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLL--YTGSVE------VKEQA 107
Query: 172 ADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLI 231
             A+ N+A ++ + +  V   + + P++ L       + R A   L  L           
Sbjct: 108 IWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWS 167
Query: 232 VECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCS 291
           V   ALPTL  ++ S D     +A   I  L        + VI     + ++ LLS   +
Sbjct: 168 VVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHEST 227
Query: 292 ESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTH 351
             +  A   +G     +      ++  G +  L  +L SP   +K+ + + +  +     
Sbjct: 228 LVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNT 287
Query: 352 NQAGIAQDGGIL-PLLKLLDSKNGSLQHNAAFAL----YGLADNEDNVADLVRVGGVQKL 406
            Q     D  ++ PL+KLL+      +  A +A+     G     D +  LV  G ++ L
Sbjct: 288 EQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPL 347
Query: 407 QD-----GEFTVQPTKDCVARTLKRLEEKVHGRVLN 437
            D         ++ T D +   LK  E     R LN
Sbjct: 348 CDLLEIADNRIIEVTLDALENILKMGEADKEARGLN 383

>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex Length = 454

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 83/396 (20%), Positives = 154/396 (38%), Gaps = 30/396 (7%)
Query: 54  LNSKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHL-QTPPQLTNAQI 112
           +  + +SD+     + T     +   ++   + +++  G VP LVE + +  P++     
Sbjct: 5   MTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEM----- 59
Query: 113 PYEHEVEKECAFALGLLAVKPEHQ-QIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRA 171
                ++ E A+AL  +A     Q +++VD  A+P  + LL  Y           V  +A
Sbjct: 60  -----LQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLL--YTGSVE------VKEQA 106
Query: 172 ADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLI 231
             A+ N+A ++ + +  V   + + P++ L       + R A   L  L           
Sbjct: 107 IWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWS 166
Query: 232 VECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCS 291
           V   ALPTL  ++ S D     +A   I  L        + VI     + ++ LLS   +
Sbjct: 167 VVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHEST 226
Query: 292 ESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTH 351
             +  A   +G     +      ++  G +  L  +L SP   +K+ + + +  +     
Sbjct: 227 LVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNT 286
Query: 352 NQAGIAQDGGIL-PLLKLLDSKNGSLQHNAAFAL----YGLADNEDNVADLVRVGGVQKL 406
            Q     D  ++ PL+KLL+      +  A +A+     G     D +  LV  G ++ L
Sbjct: 287 EQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPL 346
Query: 407 QD-----GEFTVQPTKDCVARTLKRLEEKVHGRVLN 437
            D         ++ T D +   LK  E     R LN
Sbjct: 347 CDLLEIADNRIIEVTLDALENILKMGEADKEARGLN 382

>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Length = 422

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 79/354 (22%), Positives = 146/354 (41%), Gaps = 36/354 (10%)
Query: 71  ASHALVEFAKNEEI-VSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLL 129
           A+ AL   A        ++VD  AVP  ++ L T             EV+++  +ALG +
Sbjct: 63  AAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTG----------SVEVKEQAIWALGNV 112
Query: 130 AV-KPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTR 188
           A    +++  ++   A+  ++ L    K          +IR A   ++NL          
Sbjct: 113 AGDSTDYRDYVLQCNAMEPILGLFNSNK--------PSLIRTATWTLSNLCRGKKPQPDW 164
Query: 189 VRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSED 248
             V   +P L +L+  +D +    A  A+  L+    E  + +++      LV +L  E 
Sbjct: 165 SVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHES 224
Query: 249 ASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAAD 308
             V   A+  +GN+V  +    + VI AG L  +  LLSS     K+EA   +    A +
Sbjct: 225 TLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGN 284
Query: 309 SNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGI----AQDGGILP 364
           +     ++    + PL+++L+  + + K+ + +A+   +     +  I       G I P
Sbjct: 285 TEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKP 344
Query: 365 LLKLLDSKNGSLQHNAAFAL-----YGLADNE------DNVADLV-RVGGVQKL 406
           L  LL+  +  +      AL      G AD E      +  AD + + GG++K+
Sbjct: 345 LCDLLEIADNRIIEVTLDALENIIKMGEADKEARGLNINENADFIEKAGGMEKI 398

>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae Length = 422

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 83/396 (20%), Positives = 154/396 (38%), Gaps = 30/396 (7%)
Query: 54  LNSKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHL-QTPPQLTNAQI 112
           +  + +SD+     + T     +   ++   + +++  G VP LVE + +  P++     
Sbjct: 4   MTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEM----- 58
Query: 113 PYEHEVEKECAFALGLLAVKPEHQ-QIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRA 171
                ++ E A+AL  +A     Q +++VD  A+P  + LL  Y           V  +A
Sbjct: 59  -----LQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLL--YTGSVE------VKEQA 105
Query: 172 ADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLI 231
             A+ N+A ++ + +  V   + + P++ L       + R A   L  L           
Sbjct: 106 IWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWS 165
Query: 232 VECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCS 291
           V   ALPTL  ++ S D     +A   I  L        + VI     + ++ LLS   +
Sbjct: 166 VVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHEST 225
Query: 292 ESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTH 351
             +  A   +G     +      ++  G +  L  +L SP   +K+ + + +  +     
Sbjct: 226 LVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNT 285
Query: 352 NQAGIAQDGGIL-PLLKLLDSKNGSLQHNAAFAL----YGLADNEDNVADLVRVGGVQKL 406
            Q     D  ++ PL+KLL+      +  A +A+     G     D +  LV  G ++ L
Sbjct: 286 EQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPL 345
Query: 407 QD-----GEFTVQPTKDCVARTLKRLEEKVHGRVLN 437
            D         ++ T D +   LK  E     R LN
Sbjct: 346 CDLLEIADNRIIEVTLDALENILKMGEADKEARGLN 381

>pdb|4AP2|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At 2.8a Resolution Length = 297

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 10/152 (6%)
Query: 544 GKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEI------PNIRWNVFELMMRFIYTG 597
           G++F AHR  L A+++ F  +  G + E  +  VE+      P    +  E ++ ++YTG
Sbjct: 62  GREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPEPDTVEAVIEYMYTG 121
Query: 598 NVDVSVDIAQDLLRAADQYLLEGLKRLCEYSIAQIISVENIMLMYELSEAYNATTLKQSC 657
            + VS     ++L  AD++LL  LK  C   + + + + N + ++ L+  Y  + L    
Sbjct: 122 RIRVSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLHLSNCVAIHSLAHMYTLSQLALKA 181
Query: 658 ILFILEKFDKMRNKPWF----FRLIRCVLPEI 685
              I   F K+     F    F LIR  L ++
Sbjct: 182 ADMIRRNFHKVIQDEEFYTLPFHLIRDWLSDL 213

>pdb|3I3N|A Chain A, Crystal Structure Of The Btb-Back Domains Of Human Klhl11 Length = 279

Iteration: 1
 Score = 56.2 bits (134), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 69/152 (45%), Gaps = 10/152 (6%)
Query: 544 GKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEI------PNIRWNVFELMMRFIYTG 597
           G++F AHR  L A+++ F  +  G + E  +  VE       P    +  E ++ + YTG
Sbjct: 44  GREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEXRKWSSEPGPEPDTVEAVIEYXYTG 103
Query: 598 NVDVSVDIAQDLLRAADQYLLEGLKRLCEYSIAQIISVENIMLMYELSEAYNATTLKQSC 657
            + VS     ++L  AD++LL  LK  C   + + + + N + ++ L+  Y  + L    
Sbjct: 104 RIRVSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLHLSNCVAIHSLAHXYTLSQLALKA 163
Query: 658 ILFILEKFDKMRNKPWF----FRLIRCVLPEI 685
              I   F K+     F    F LIR  L ++
Sbjct: 164 ADXIRRNFHKVIQDEEFYTLPFHLIRDWLSDL 195

>pdb|2GL7|A Chain A, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX Length = 550

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 102/225 (45%), Gaps = 3/225 (1%)
Query: 167 VIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFV-DVKVQRAAAGALRTLAFKND 225
           V+ +AA  +  L+ + A+    +R    +  +V  ++   DV+  R  AG L  L+  + 
Sbjct: 31  VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HR 89
Query: 226 ENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGL 285
           E    I +   +P LV ML S   SV F A+  + NL+      K  V LAG LQ ++ L
Sbjct: 90  EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 149
Query: 286 LSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPD-SQLKEMSAFALG 344
           L+ +  +        L   A  +  SK+ I+  G  + L+ ++++    +L   ++  L 
Sbjct: 150 LNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK 209
Query: 345 RLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLAD 389
            L+  + N+  I + GG+  L   L   +  L  N  + L  L+D
Sbjct: 210 VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 254

>pdb|1I7X|A Chain A, Beta-CateninE-Cadherin Complex Length = 538

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 102/225 (45%), Gaps = 3/225 (1%)
Query: 167 VIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFV-DVKVQRAAAGALRTLAFKND 225
           V+ +AA  +  L+ + A+    +R    +  +V  ++   DV+  R  AG L  L+  + 
Sbjct: 34  VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HR 92
Query: 226 ENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGL 285
           E    I +   +P LV ML S   SV F A+  + NL+      K  V LAG LQ ++ L
Sbjct: 93  EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 152
Query: 286 LSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPD-SQLKEMSAFALG 344
           L+ +  +        L   A  +  SK+ I+  G  + L+ ++++    +L   ++  L 
Sbjct: 153 LNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK 212
Query: 345 RLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLAD 389
            L+  + N+  I + GG+  L   L   +  L  N  + L  L+D
Sbjct: 213 VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 257

>pdb|3OUW|A Chain A, Structure Of Beta-Catenin With Lef-1 Length = 540

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 102/225 (45%), Gaps = 3/225 (1%)
Query: 167 VIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFV-DVKVQRAAAGALRTLAFKND 225
           V+ +AA  +  L+ + A+    +R    +  +V  ++   DV+  R  AG L  L+  + 
Sbjct: 36  VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HR 94
Query: 226 ENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGL 285
           E    I +   +P LV ML S   SV F A+  + NL+      K  V LAG LQ ++ L
Sbjct: 95  EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 154
Query: 286 LSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPD-SQLKEMSAFALG 344
           L+ +  +        L   A  +  SK+ I+  G  + L+ ++++    +L   ++  L 
Sbjct: 155 LNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK 214
Query: 345 RLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLAD 389
            L+  + N+  I + GG+  L   L   +  L  N  + L  L+D
Sbjct: 215 VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 259

>pdb|1JPW|A Chain A, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex Length = 540

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 102/225 (45%), Gaps = 3/225 (1%)
Query: 167 VIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFV-DVKVQRAAAGALRTLAFKND 225
           V+ +AA  +  L+ + A+    +R    +  +V  ++   DV+  R  AG L  L+  + 
Sbjct: 37  VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HR 95
Query: 226 ENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGL 285
           E    I +   +P LV ML S   SV F A+  + NL+      K  V LAG LQ ++ L
Sbjct: 96  EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 155
Query: 286 LSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPD-SQLKEMSAFALG 344
           L+ +  +        L   A  +  SK+ I+  G  + L+ ++++    +L   ++  L 
Sbjct: 156 LNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK 215
Query: 345 RLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLAD 389
            L+  + N+  I + GG+  L   L   +  L  N  + L  L+D
Sbjct: 216 VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 260

>pdb|2Z6H|A Chain A, Crystal Structure Of Beta-Catenin Armadillo Repeat Region And Its C-Terminal Domain Length = 644

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 101/225 (44%), Gaps = 3/225 (1%)
Query: 167 VIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFV-DVKVQRAAAGALRTLAFKND 225
           V+ +AA  +  L+ + A+    +R    +  +V  ++   DV+  R  AG L  L+    
Sbjct: 30  VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR- 88
Query: 226 ENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGL 285
           E    I +   +P LV ML S   SV F A+  + NL+      K  V LAG LQ ++ L
Sbjct: 89  EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 148
Query: 286 LSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPD-SQLKEMSAFALG 344
           L+ +  +        L   A  +  SK+ I+  G  + L+ ++++    +L   ++  L 
Sbjct: 149 LNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK 208
Query: 345 RLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLAD 389
            L+  + N+  I + GG+  L   L   +  L  N  + L  L+D
Sbjct: 209 VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 253

>pdb|1G3J|A Chain A, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo Repeat Complex Length = 532

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 102/225 (45%), Gaps = 3/225 (1%)
Query: 167 VIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFV-DVKVQRAAAGALRTLAFKND 225
           V+ +AA  +  L+ + A+    +R    +  +V  ++   DV+  R  AG L  L+  + 
Sbjct: 35  VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HR 93
Query: 226 ENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGL 285
           E    I +   +P LV ML S   SV F A+  + NL+      K  V LAG LQ ++ L
Sbjct: 94  EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 153
Query: 286 LSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPD-SQLKEMSAFALG 344
           L+ +  +        L   A  +  SK+ I+  G  + L+ ++++    +L   ++  L 
Sbjct: 154 LNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK 213
Query: 345 RLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLAD 389
            L+  + N+  I + GG+  L   L   +  L  N  + L  L+D
Sbjct: 214 VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 258

>pdb|1QZ7|A Chain A, Beta-Catenin Binding Domain Of Axin In Complex With Beta- Catenin Length = 533

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 102/225 (45%), Gaps = 3/225 (1%)
Query: 167 VIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFV-DVKVQRAAAGALRTLAFKND 225
           V+ +AA  +  L+ + A+    +R    +  +V  ++   DV+  R  AG L  L+  + 
Sbjct: 35  VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HR 93
Query: 226 ENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGL 285
           E    I +   +P LV ML S   SV F A+  + NL+      K  V LAG LQ ++ L
Sbjct: 94  EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 153
Query: 286 LSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPD-SQLKEMSAFALG 344
           L+ +  +        L   A  +  SK+ I+  G  + L+ ++++    +L   ++  L 
Sbjct: 154 LNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK 213
Query: 345 RLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLAD 389
            L+  + N+  I + GG+  L   L   +  L  N  + L  L+D
Sbjct: 214 VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 258

>pdb|3TX7|A Chain A, Crystal Structure Of Lrh-1BETA-Catenin Complex Length = 527

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 102/225 (45%), Gaps = 3/225 (1%)
Query: 167 VIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFV-DVKVQRAAAGALRTLAFKND 225
           V+ +AA  +  L+ + A+    +R    +  +V  ++   DV+  R  AG L  L+  + 
Sbjct: 31  VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HR 89
Query: 226 ENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGL 285
           E    I +   +P LV ML S   SV F A+  + NL+      K  V LAG LQ ++ L
Sbjct: 90  EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 149
Query: 286 LSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPD-SQLKEMSAFALG 344
           L+ +  +        L   A  +  SK+ I+  G  + L+ ++++    +L   ++  L 
Sbjct: 150 LNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK 209
Query: 345 RLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLAD 389
            L+  + N+  I + GG+  L   L   +  L  N  + L  L+D
Sbjct: 210 VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 254

>pdb|1LUJ|A Chain A, Crystal Structure Of The Beta-CateninICAT COMPLEX Length = 514

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 102/225 (45%), Gaps = 3/225 (1%)
Query: 167 VIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFV-DVKVQRAAAGALRTLAFKND 225
           V+ +AA  +  L+ + A+    +R    +  +V  ++   DV+  R  AG L  L+  + 
Sbjct: 18  VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HR 76
Query: 226 ENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGL 285
           E    I +   +P LV ML S   SV F A+  + NL+      K  V LAG LQ ++ L
Sbjct: 77  EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 136
Query: 286 LSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPD-SQLKEMSAFALG 344
           L+ +  +        L   A  +  SK+ I+  G  + L+ ++++    +L   ++  L 
Sbjct: 137 LNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK 196
Query: 345 RLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLAD 389
            L+  + N+  I + GG+  L   L   +  L  N  + L  L+D
Sbjct: 197 VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 241

>pdb|2BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin Length = 516

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 102/225 (45%), Gaps = 3/225 (1%)
Query: 167 VIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFV-DVKVQRAAAGALRTLAFKND 225
           V+ +AA  +  L+ + A+    +R    +  +V  ++   DV+  R  AG L  L+  + 
Sbjct: 18  VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HR 76
Query: 226 ENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGL 285
           E    I +   +P LV ML S   SV F A+  + NL+      K  V LAG LQ ++ L
Sbjct: 77  EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 136
Query: 286 LSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPD-SQLKEMSAFALG 344
           L+ +  +        L   A  +  SK+ I+  G  + L+ ++++    +L   ++  L 
Sbjct: 137 LNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK 196
Query: 345 RLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLAD 389
            L+  + N+  I + GG+  L   L   +  L  N  + L  L+D
Sbjct: 197 VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 241

>pdb|4DJS|A Chain A, Structure Of Beta-Catenin In Complex With A Stapled Peptide Inhibitor Length = 518

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 102/225 (45%), Gaps = 3/225 (1%)
Query: 167 VIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFV-DVKVQRAAAGALRTLAFKND 225
           V+ +AA  +  L+ + A+    +R    +  +V  ++   DV+  R  AG L  L+  + 
Sbjct: 20  VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HR 78
Query: 226 ENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGL 285
           E    I +   +P LV ML S   SV F A+  + NL+      K  V LAG LQ ++ L
Sbjct: 79  EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 138
Query: 286 LSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPD-SQLKEMSAFALG 344
           L+ +  +        L   A  +  SK+ I+  G  + L+ ++++    +L   ++  L 
Sbjct: 139 LNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK 198
Query: 345 RLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLAD 389
            L+  + N+  I + GG+  L   L   +  L  N  + L  L+D
Sbjct: 199 VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 243

>pdb|1JDH|A Chain A, Crystal Structure Of Beta-Catenin And Htcf-4 Length = 529

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 102/225 (45%), Gaps = 3/225 (1%)
Query: 167 VIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFV-DVKVQRAAAGALRTLAFKND 225
           V+ +AA  +  L+ + A+    +R    +  +V  ++   DV+  R  AG L  L+  + 
Sbjct: 33  VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HR 91
Query: 226 ENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGL 285
           E    I +   +P LV ML S   SV F A+  + NL+      K  V LAG LQ ++ L
Sbjct: 92  EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 151
Query: 286 LSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPD-SQLKEMSAFALG 344
           L+ +  +        L   A  +  SK+ I+  G  + L+ ++++    +L   ++  L 
Sbjct: 152 LNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK 211
Query: 345 RLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLAD 389
            L+  + N+  I + GG+  L   L   +  L  N  + L  L+D
Sbjct: 212 VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 256

>pdb|1T08|A Chain A, Crystal Structure Of Beta-CateninICAT HELICAL DomainUNPHOSPHORYLATED APC R3 Length = 519

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 102/225 (45%), Gaps = 3/225 (1%)
Query: 167 VIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFV-DVKVQRAAAGALRTLAFKND 225
           V+ +AA  +  L+ + A+    +R    +  +V  ++   DV+  R  AG L  L+  + 
Sbjct: 22  VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HR 80
Query: 226 ENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGL 285
           E    I +   +P LV ML S   SV F A+  + NL+      K  V LAG LQ ++ L
Sbjct: 81  EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 140
Query: 286 LSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPD-SQLKEMSAFALG 344
           L+ +  +        L   A  +  SK+ I+  G  + L+ ++++    +L   ++  L 
Sbjct: 141 LNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK 200
Query: 345 RLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLAD 389
            L+  + N+  I + GG+  L   L   +  L  N  + L  L+D
Sbjct: 201 VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 245

>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2 Subunit In Complex With Human Importin Alpha5 Length = 450

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 77/328 (23%), Positives = 145/328 (44%), Gaps = 54/328 (16%)
Query: 87  LIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEH-QQIIVDTGAL 145
           +++  GAVP  +E L +          +E +V+++  +ALG +A      +  ++D   L
Sbjct: 102 IVIQAGAVPIFIELLSS---------EFE-DVQEQAVWALGNIAGDSTMCRDYVLDCNIL 151
Query: 146 PHLVSLLKQYKNGGNSR----ALSGVIRRA----------------------------AD 173
           P L+ L  +      +R    ALS + R                              AD
Sbjct: 152 PPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLAD 211
Query: 174 AITNLAH--ENANIKTRVRVEDGIP-PLVELLKFVDVKVQRAAAGALRTLAFKNDENKKL 230
           A   L++  +  N K +  ++ G+   LVELL   D KV   A  A+  +   +D   ++
Sbjct: 212 ACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQV 271
Query: 231 IVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSC 290
           I+ C+AL +L+ +L S   S+  EA   I N+   + +  + VI A     +I +L ++ 
Sbjct: 272 ILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAE 331
Query: 291 SESKREAALLLGQFAAADSNSKV-HIVQRGAVRPLIEMLQSPDSQLKEMSAFALG---RL 346
             +++EAA  +    +  S  ++ ++V+ G ++PL ++L   DS++ +++   L    RL
Sbjct: 332 FRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRL 391
Query: 347 AQDTHNQAGIAQDGGILPLLKLLDSKNG 374
            +    + G     GI P   L++   G
Sbjct: 392 GEQEAKRNGT----GINPYCALIEEAYG 415

>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2 Subunit In Complex With Human Importin Alpha5 Length = 450

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 76/165 (46%), Gaps = 3/165 (1%)
Query: 245 RSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQF 304
           R E+ ++ FE+  V+ N+   +    + VI AGA+   I LLSS   + + +A   LG  
Sbjct: 75  RKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNI 134
Query: 305 AAADSNSKVHIVQRGAVRPLIEMLQSPDS-QLKEMSAFALGRLAQDTHNQAGIAQDGGIL 363
           A   +  + +++    + PL+++    +   +   + +AL  L +        A+    L
Sbjct: 135 AGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCL 194
Query: 364 PLLK-LLDSKNGSLQHNAAFALYGLADN-EDNVADLVRVGGVQKL 406
            +L  LL   +  +  +A +AL  L+D   D +  ++  G  ++L
Sbjct: 195 NVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRL 239

>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50 Length = 447

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 77/328 (23%), Positives = 145/328 (44%), Gaps = 54/328 (16%)
Query: 87  LIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEH-QQIIVDTGAL 145
           +++  GAVP  +E L +          +E +V+++  +ALG +A      +  ++D   L
Sbjct: 99  IVIQAGAVPIFIELLSS---------EFE-DVQEQAVWALGNIAGDSTMCRDYVLDCNIL 148
Query: 146 PHLVSLLKQYKNGGNSR----ALSGVIRRA----------------------------AD 173
           P L+ L  +      +R    ALS + R                              AD
Sbjct: 149 PPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLAD 208
Query: 174 AITNLAH--ENANIKTRVRVEDGIP-PLVELLKFVDVKVQRAAAGALRTLAFKNDENKKL 230
           A   L++  +  N K +  ++ G+   LVELL   D KV   A  A+  +   +D   ++
Sbjct: 209 ACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQV 268
Query: 231 IVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSC 290
           I+ C+AL +L+ +L S   S+  EA   I N+   + +  + VI A     +I +L ++ 
Sbjct: 269 ILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAE 328
Query: 291 SESKREAALLLGQFAAADSNSKV-HIVQRGAVRPLIEMLQSPDSQLKEMSAFALG---RL 346
             +++EAA  +    +  S  ++ ++V+ G ++PL ++L   DS++ +++   L    RL
Sbjct: 329 FRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRL 388
Query: 347 AQDTHNQAGIAQDGGILPLLKLLDSKNG 374
            +    + G     GI P   L++   G
Sbjct: 389 GEQEAKRNGT----GINPYCALIEEAYG 412

>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50 Length = 447

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 76/165 (46%), Gaps = 3/165 (1%)
Query: 245 RSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQF 304
           R E+ ++ FE+  V+ N+   +    + VI AGA+   I LLSS   + + +A   LG  
Sbjct: 72  RKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNI 131
Query: 305 AAADSNSKVHIVQRGAVRPLIEMLQSPDS-QLKEMSAFALGRLAQDTHNQAGIAQDGGIL 363
           A   +  + +++    + PL+++    +   +   + +AL  L +        A+    L
Sbjct: 132 AGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCL 191
Query: 364 PLLK-LLDSKNGSLQHNAAFALYGLADN-EDNVADLVRVGGVQKL 406
            +L  LL   +  +  +A +AL  L+D   D +  ++  G  ++L
Sbjct: 192 NVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRL 236

>pdb|1XM9|A Chain A, Structure Of The Armadillo Repeat Domain Of Plakophilin 1 Length = 457

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 39/110 (35%), Positives = 61/110 (55%), Gaps = 4/110 (3%)
Query: 175 ITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVEC 234
           I +   ++ + K +V    GI  LV+LL+  +  VQ+AAAGALR L F++  NK      
Sbjct: 26  IQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQ 85
Query: 235 NALPTLV-LMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVI 283
           N +   V L+ R+ +A +  +  G++ NL  SS    KE ++A AL PV+
Sbjct: 86  NGIREAVSLLRRTGNAEIQKQLTGLLWNL--SSTDELKEELIADAL-PVL 132

>pdb|2IF5|A Chain A, Structure Of The Poz Domain Of Human Lrf, A Master Regulator Of Oncogenesis Length = 120

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 40/91 (43%)
Query: 535 LSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFI 594
           L DV  +VEG++F  HR  L A S  F+ +F  G         EI  +       +M F 
Sbjct: 25  LCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDFVSAEALTALMDFA 84
Query: 595 YTGNVDVSVDIAQDLLRAADQYLLEGLKRLC 625
           YT  + VS     D+L AA    +  +  +C
Sbjct: 85  YTATLTVSTANVGDILSAARLLEIPAVSHVC 115

>pdb|3IFQ|A Chain A, Interction Of Plakoglobin And Beta-Catenin With Desmosomal Cadherins Length = 553

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 62/250 (24%), Positives = 107/250 (42%), Gaps = 11/250 (4%)
Query: 142 TGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVEL 201
           T ALP L  LL              V+ +AA  +  L+ + A+ +  +     +  +V  
Sbjct: 18  TRALPELTKLLNDED--------PVVVTKAAMIVNQLSKKEASRRALMGSPQLVAAVVRT 69
Query: 202 LKFV-DVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIG 260
           ++   D+   R     L  L+  + E    I +   +P LV ML S   SV F A+  + 
Sbjct: 70  MQNTSDLDTARCTTSILHNLSH-HREGLLAIFKSGGIPALVRMLSSPVESVLFYAITTLH 128
Query: 261 NLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGA 320
           NL+      K  V LA  LQ ++ LL+ +  +        L   A  +  SK+ I+  G 
Sbjct: 129 NLLLYQEGAKMAVRLADGLQKMVPLLNKNNPKFLAITTDCLQLLAYGNQESKLIILANGG 188
Query: 321 VRPLIEMLQSPD-SQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHN 379
            + L++++++    +L   ++  L  L+    N+  I + GG+  L K L S +  L  N
Sbjct: 189 PQALVQIMRNYSYEKLLWTTSRVLKVLSVCPSNKPAIVEAGGMQALGKHLTSNSPRLVQN 248
Query: 380 AAFALYGLAD 389
             + L  L+D
Sbjct: 249 CLWTLRNLSD 258

>pdb|2NN2|A Chain A, Crystal Structure Of The Btb Domain From The LrfZBTB7 Transcriptional Regulator Length = 133

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 40/91 (43%)
Query: 535 LSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFI 594
           L DV  +VEG++F  HR  L A S  F+ +F  G         EI  +       +M F 
Sbjct: 35  LCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDFVSAEALTALMDFA 94
Query: 595 YTGNVDVSVDIAQDLLRAADQYLLEGLKRLC 625
           YT  + VS     D+L AA    +  +  +C
Sbjct: 95  YTATLTVSTANVGDILSAARLLEIPAVSHVC 125

>pdb|3LTM|A Chain A, Structure Of A New Family Of Artificial Alpha Helicoidal Repeat Proteins (Alpha-Rep) Based On Thermostable Heat-Like Repeats Length = 211

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 76/176 (43%), Gaps = 43/176 (24%)
Query: 209 VQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPS 268
           V+RAAA AL  +    DE         A+  L+  L+ EDA V   A   +G +      
Sbjct: 35  VRRAAAYALGKI---GDER--------AVEPLIKALKDEDAWVRRAAADALGQIGDER-- 81
Query: 269 IKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEML 328
                    A++P+I  L       ++ AA+ LGQ           I    AV PLI+ L
Sbjct: 82  ---------AVEPLIKALKDEDGWVRQSAAVALGQ-----------IGDERAVEPLIKAL 121
Query: 329 QSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFAL 384
           +  D  ++  +AFALG           I  +  + PL+K L  ++G ++ +AA AL
Sbjct: 122 KDEDWFVRIAAAFALGE----------IGDERAVEPLIKALKDEDGWVRQSAADAL 167

>pdb|3LTJ|A Chain A, Structure Of A New Family Of Artificial Alpha Helicoidal Repeat Proteins (Alpha-Rep) Based On Thermostable Heat-Like Repeats Length = 201

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 76/176 (43%), Gaps = 43/176 (24%)
Query: 209 VQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPS 268
           V+RAAA AL  +    DE         A+  L+  L+ EDA V   A   +G +      
Sbjct: 30  VRRAAAYALGKI---GDER--------AVEPLIKALKDEDAWVRRAAADALGQIGDER-- 76
Query: 269 IKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEML 328
                    A++P+I  L       ++ AA+ LGQ           I    AV PLI+ L
Sbjct: 77  ---------AVEPLIKALKDEDGWVRQSAAVALGQ-----------IGDERAVEPLIKAL 116
Query: 329 QSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFAL 384
           +  D  ++  +AFALG           I  +  + PL+K L  ++G ++ +AA AL
Sbjct: 117 KDEDWFVRIAAAFALGE----------IGDERAVEPLIKALKDEDGWVRQSAADAL 162

>pdb|3GA1|A Chain A, Crystal Structure Of The Human Nac1 Poz Domain Length = 129

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 6/82 (7%)
Query: 537 DVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIP-NIRWNVFELMMRFIY 595
           DV+ VV+G  F AHR  L ASS  FR +F+       +  VE+P  ++   F+ ++ F Y
Sbjct: 35  DVSVVVKGHAFKAHRAVLAASSSYFRDLFN----NSRSAVVELPAAVQPQSFQQILSFCY 90
Query: 596 TGNVDVSVDIAQDLLRAADQYL 617
           TG + ++V   QDLL     +L
Sbjct: 91  TGRLSMNVG-DQDLLMYTAGFL 111

>pdb|3SLA|A Chain A, X-Ray Structure Of First Four Repeats Of Human Beta-Catenin Length = 168

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 60/124 (48%), Gaps = 2/124 (1%)
Query: 167 VIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFV-DVKVQRAAAGALRTLAFKND 225
           V+ +AA  +  L+ + A+    +R    +  +V  ++   DV+  R  AG L  L+  + 
Sbjct: 29  VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HR 87
Query: 226 ENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGL 285
           E    I +   +P LV ML S   SV F A+  + NL+      K  V LAG LQ ++ L
Sbjct: 88  EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 147
Query: 286 LSSS 289
           L+ +
Sbjct: 148 LNKT 151

>pdb|3SL9|A Chain A, X-Ray Structure Of Beta Catenin In Complex With Bcl9 Length = 167

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 60/124 (48%), Gaps = 2/124 (1%)
Query: 167 VIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFV-DVKVQRAAAGALRTLAFKND 225
           V+ +AA  +  L+ + A+    +R    +  +V  ++   DV+  R  AG L  L+  + 
Sbjct: 29  VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HR 87
Query: 226 ENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGL 285
           E    I +   +P LV ML S   SV F A+  + NL+      K  V LAG LQ ++ L
Sbjct: 88  EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 147
Query: 286 LSSS 289
           L+ +
Sbjct: 148 LNKT 151

>pdb|3TT9|A Chain A, Crystal Structure Of The Stable Degradation Fragment Of Human Plakophilin 2 Isoform A (Pkp2a) C752r Variant Length = 233

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 61/113 (53%), Gaps = 3/113 (2%)
Query: 168 IRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDEN 227
           I  AA  I +   + +  + RV    GI  L++LLK  +  VQRA  GALR L F++++N
Sbjct: 27  ISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDN 86
Query: 228 KKLIVECNALPTLVLMLR-SEDASVHFEAVGVIGNLVHSSPSIKKEVILAGAL 279
           K  + E N +P L+ +L+ + D     +  G++ NL  SS    K +++  AL
Sbjct: 87  KLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNL--SSNDKLKNLMITEAL 137

>pdb|2Z6G|A Chain A, Crystal Structure Of A Full-Length Zebrafish Beta-Catenin Length = 780

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 54/230 (23%), Positives = 101/230 (43%), Gaps = 12/230 (5%)
Query: 139 IVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPL 198
           I  +G +P LV++L           +  V+  A   + NL       K  VR+  G+  +
Sbjct: 230 IFKSGGIPALVNML--------GSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKM 281
Query: 199 VELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGV 258
           V LL   +VK        L+ LA+ N E+K +I+       LV ++R+            
Sbjct: 282 VALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSR 341
Query: 259 IGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQR 318
           +  ++    S K  ++ AG +Q  +GL  +  S+   +  L   +   +D+ +K   ++ 
Sbjct: 342 VLKVLSVCSSNKPAIVEAGGMQ-ALGLHLTDPSQRLVQNCLWTLR-NLSDAATKQEGME- 398
Query: 319 GAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTH-NQAGIAQDGGILPLLK 367
           G +  L+++L S D  +   +A  L  L  + + N+  + Q GGI  L++
Sbjct: 399 GLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVR 448

>pdb|1CS3|A Chain A, Structure Of BtbPOZ TRANSCRIPTION REPRESSION DOMAIN FROM PROMELOCYTIC Leukemia Zinc Finger Oncoprotein Length = 116

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 5/98 (5%)
Query: 516 PPSPTQQVYLGEQFVNNPTLSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAK 575
           P  PT  +    Q     TL DV  +V+ ++F+AHR  L  +S  F  +F      +N++
Sbjct: 8   PSHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILF-----HRNSQ 62
Query: 576 DVEIPNIRWNVFELMMRFIYTGNVDVSVDIAQDLLRAA 613
              +  +    F+ ++ + YT  +    +   DLL AA
Sbjct: 63  HYTLDFLSPKTFQQILEYAYTATLQAKAEDLDDLLYAA 100

>pdb|1BUO|A Chain A, Btb Domain From Plzf Length = 121

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 5/98 (5%)
Query: 516 PPSPTQQVYLGEQFVNNPTLSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAK 575
           P  PT  +    Q     TL DV  +V+ ++F+AHR  L  +S  F  +F      +N++
Sbjct: 9   PSHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILF-----HRNSQ 63
Query: 576 DVEIPNIRWNVFELMMRFIYTGNVDVSVDIAQDLLRAA 613
              +  +    F+ ++ + YT  +    +   DLL AA
Sbjct: 64  HYTLDFLSPKTFQQILEYAYTATLQAKAEDLDDLLYAA 101

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	704
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	2e-72
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	2e-64
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	1e-63
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	9e-62
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	6e-60
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	7e-50
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	5e-42
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	6e-72
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	9e-65
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	2e-64
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	6e-63
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	8e-57
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	1e-51
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	2e-42
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	4e-29
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	4e-71
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	3e-64
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	6e-63
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-62
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-59
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-41
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	7e-32
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	7e-66
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	4e-58
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	4e-51
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	1e-65
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	1e-44
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	8e-42
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	2e-36
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	4e-16
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	5e-64
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	3e-45
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	4e-42
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	1e-35
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	6e-64
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	3e-50
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	6e-44
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	3e-12
3nmz_A	458	APC variant protein; protein-protein complex, arma	7e-64
3nmz_A	458	APC variant protein; protein-protein complex, arma	1e-45
3nmz_A	458	APC variant protein; protein-protein complex, arma	2e-43
3nmz_A	458	APC variant protein; protein-protein complex, arma	2e-28
3nmz_A	458	APC variant protein; protein-protein complex, arma	5e-16
3nmz_A	458	APC variant protein; protein-protein complex, arma	9e-07
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	8e-59
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	1e-58
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	5e-46
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	1e-40
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	1e-58
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	2e-42
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	2e-33
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	5e-33
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	9e-23
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	4e-20
3htm_A	172	Speckle-type POZ protein; BTB, SPOP, ubiquitin, li	4e-52
3hqi_A	312	Speckle-type POZ protein; SPOP, ubiquitin, puckere	5e-48
4eoz_A	145	Speckle-type POZ protein; E3 ubiquitin ligase, nuc	2e-47
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	2e-38
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	2e-33
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	8e-28
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	1e-23
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	7e-18
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	3e-17
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	8e-04
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	5e-36
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	4e-35
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	4e-35
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	2e-24
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	2e-09
2vkp_A	109	BTB/POZ domain-containing protein 6; protein-bindi	7e-36
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	4e-35
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	8e-34
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	7e-32
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	6e-24
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	7e-35
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	2e-23
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	9e-20
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	3e-18
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	5e-34
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	1e-27
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	2e-27
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	2e-16
3hve_A	256	Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis	1e-31
3i3n_A	279	Kelch-like protein 11; structural genomics, BTB, K	8e-29
2if5_A	120	Zinc finger and BTB domain-containing protein 7A;	3e-25
2ppi_A	144	Gigaxonin; BTB domain, protein degradation, struct	2e-24
1r29_A	127	B-cell lymphoma 6 protein; BTB domain, transcripti	3e-24
2ihc_A	124	Transcription regulator protein BACH1; BRIC-A-BRAC	1e-22
3ohu_A	125	Transcription regulator protein BACH2; BTB/POZ dom	1e-22
2z8h_A	138	Transcription regulator protein BACH1; BTB, POZ, d	3e-22
2vpk_A	116	Myoneurin; transcription regulation, transcription	4e-22
3b84_A	119	Zinc finger and BTB domain-containing protein 48;	4e-22
2yy9_A	135	Zinc finger and BTB domain-containing protein 48;	6e-22
1buo_A	121	POZ domain, protein (promyelocytic leukemia zinc f	2e-21
3ga1_A	129	Nucleus accumbens-associated protein 1; BTB/POZ do	7e-20
2q81_A	119	MIZ-1 protein; BTB/POZ domain, transcription; HET:	9e-20
3m5b_A	119	Zinc finger and BTB domain-containing protein 32;	3e-19
3fkc_A	116	Transcriptional regulator kaiso; zinc finger and B	4e-18
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	4e-15
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	3e-10
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	5e-08
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	2e-07
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	1e-14
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	1e-14
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	9e-09
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	4e-14
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	4e-14
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	1e-09
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	2e-08
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	2e-10
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	2e-07
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	4e-06
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	3e-10
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	7e-08
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	4e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-09
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	3e-08
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	2e-06
3grl_A	651	General vesicular transport factor P115; vesicle t	2e-06
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	8e-06
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	8e-04
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	8e-04

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  243 bits (623), Expect = 2e-72
 Identities = 84/386 (21%), Positives = 146/386 (37%), Gaps = 34/386 (8%)

Query: 134 EHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVED 193
                 + T A+P L  LL       +      V+ +AA  +  L+ + A+    +R   
Sbjct: 8   YQDDAELATRAIPELTKLLN----DEDQ----VVVNKAAVMVHQLSKKEASRHAIMRSPQ 59

Query: 194 GIPPLVELLKF-VDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVH 252
            +  +V  ++   DV+  R  AG L  L+  + E    I +   +P LV ML S   SV 
Sbjct: 60  MVSAIVRTMQNTNDVETARCTAGTLHNLS-HHREGLLAIFKSGGIPALVKMLGSPVDSVL 118

Query: 253 FEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSK 312
           F A+  + NL+      K  V LAG LQ ++ LL+ +  +        L   A  +  SK
Sbjct: 119 FYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESK 178

Query: 313 VHIVQRGAVRPLIEMLQSPD-SQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDS 371
           + I+  G  + L+ ++++    +L   ++  L  L+  + N+  I + GG+  L   L  
Sbjct: 179 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTD 238

Query: 372 KNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKL----QDGEFTVQPTKDCVARTLKRL 427
            +  L  N  + L  L+D           G +  L       +  V     C A  L  L
Sbjct: 239 PSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVV---TCAAGILSNL 293

Query: 428 --------EEKVHGRVLNHLLYLLRVA--DRAVKRRVTLALAHLCAPDDC----KTIFID 473
                           +  L+  +  A     +      AL HL +        +     
Sbjct: 294 TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRL 353

Query: 474 NNGLELLLGLLESTSVKQREESSVAL 499
           + GL +++ LL   S     +++V L
Sbjct: 354 HYGLPVVVKLLHPPSHWPLIKATVGL 379

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  222 bits (567), Expect = 2e-64
 Identities = 95/489 (19%), Positives = 166/489 (33%), Gaps = 55/489 (11%)

Query: 25  EKPDRKVSIVESGATQQDLVQDIRAQIDILNSKFSSDETDRAAAKTASHALVEFAKNEEI 84
           ++  R   +             + A +  + +       D   A+  +  L   + + E 
Sbjct: 47  KEASRHAIMRSPQM--------VSAIVRTMQN-----TNDVETARCTAGTLHNLSHHREG 93

Query: 85  VSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALG-LLAVKPEHQQIIVDTG 143
           +  I  +G +PALV+ L +P             V       L  LL  +   +  +   G
Sbjct: 94  LLAIFKSGGIPALVKMLGSPVD----------SVLFYAITTLHNLLLHQEGAKMAVRLAG 143

Query: 144 ALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLK 203
            L  +V+LL +     N + L        D +  LA+ N   K  +    G   LV +++
Sbjct: 144 GLQKMVALLNK----TNVKFL----AITTDCLQILAYGNQESKLIILASGGPQALVNIMR 195

Query: 204 FVDV-KVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNL 262
                K+    +  L+ L+     NK  IVE   +  L L L      +    +  + NL
Sbjct: 196 TYTYEKLLWTTSRVLKVLS-VCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 254

Query: 263 VHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVR 322
              S +  K+  + G L  ++ LL S        AA +L      +  +K+ + Q G + 
Sbjct: 255 ---SDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIE 311

Query: 323 PLIEMLQ--SPDSQLKEMSAFALGRLAQDTHN----QAGIAQDGGILPLLKLLDSKNGSL 376
            L+  +        + E +  AL  L          Q  +    G+  ++KLL   +   
Sbjct: 312 ALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWP 371

Query: 377 QHNAAFALYG-LADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRV 435
              A   L   LA    N A L   G + +L      VQ        T +R         
Sbjct: 372 LIKATVGLIRNLALCPANHAPLREQGAIPRL------VQLLVRAHQDTQRR-----TSMG 420

Query: 436 LNHLLYLLRVADRAVKRRVTLALAHLCAPDDCKTIFIDNNGLELLLGLLESTSVKQREES 495
                ++  V    +    T AL  L      + +    N + L + LL S     +  +
Sbjct: 421 GTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVA 480

Query: 496 SVALYKLAT 504
           +  L +LA 
Sbjct: 481 AGVLCELAQ 489

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  220 bits (561), Expect = 1e-63
 Identities = 75/434 (17%), Positives = 146/434 (33%), Gaps = 37/434 (8%)

Query: 88  IVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVK-PEHQQIIVDTGALP 146
            +   A+P L + L             +  V  + A  +  L+ K      I+     + 
Sbjct: 13  ELATRAIPELTKLLNDE----------DQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVS 62

Query: 147 HLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVD 206
            +V  ++       +       R  A  + NL+H        +    GIP LV++L    
Sbjct: 63  AIVRTMQ-------NTNDVETARCTAGTLHNLSHHREG-LLAIFKSGGIPALVKMLGSPV 114

Query: 207 VKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSS 266
             V   A   L  L    +  K  +     L  +V +L   +          +  L + +
Sbjct: 115 DSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 174

Query: 267 PSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIE 326
              K  ++ +G  Q ++ ++ +   E        + +  +  S++K  IV+ G ++ L  
Sbjct: 175 QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGL 234

Query: 327 MLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYG 386
            L  P  +L +   + L  L+     Q G+   G +  L++LL S + ++   AA  L  
Sbjct: 235 HLTDPSQRLVQNCLWTLRNLSDAATKQEGME--GLLGTLVQLLGSDDINVVTCAAGILSN 292

Query: 387 LA-DNEDNVADLVRVGGVQKLQDGEFTVQPTKDCV---ARTLKRL-----------EEKV 431
           L  +N  N   + +VGG++ L          +D        L+ L               
Sbjct: 293 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVR 352

Query: 432 HGRVLNHLLYLLRVADRAVKRRVTLALAHLCAP-DDCKTIFIDNNGLELLLGLLESTSVK 490
               L  ++ LL         + T+ L    A          +   +  L+ LL      
Sbjct: 353 LHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQD 412

Query: 491 QREESSVALYKLAT 504
            +  +S+   +   
Sbjct: 413 TQRRTSMGGTQQQF 426

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  214 bits (547), Expect = 9e-62
 Identities = 79/485 (16%), Positives = 158/485 (32%), Gaps = 54/485 (11%)

Query: 27  PDRKVSIVESGATQQDLVQDIRAQIDILNSKFSSDETDRAAAKTASHALVEFAK-NEEIV 85
            +  ++I +SG         I A + +L S         +    A   L       E   
Sbjct: 91  REGLLAIFKSGG--------IPALVKMLGS------PVDSVLFYAITTLHNLLLHQEGAK 136

Query: 86  SLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAV-KPEHQQIIVDTGA 144
             +   G +  +V  L               +        L +LA    E + II+ +G 
Sbjct: 137 MAVRLAGGLQKMVALLNKTNV----------KFLAITTDCLQILAYGNQESKLIILASGG 186

Query: 145 LPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKF 204
              LV++++       +     ++   +  +  L+  ++N K  +    G+  L   L  
Sbjct: 187 PQALVNIMR-------TYTYEKLLWTTSRVLKVLSVCSSN-KPAIVEAGGMQALGLHLTD 238

Query: 205 VDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVH 264
              ++ +     LR L+   D   K       L TLV +L S+D +V   A G++ NL  
Sbjct: 239 PSQRLVQNCLWTLRNLS---DAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTC 295

Query: 265 SSPSIKKEVILAGALQPVIGLLSSSCSES--KREAALLLGQFAAADSNSKV---HIVQRG 319
           ++   K  V   G ++ ++  +  +         A   L    +    +++    +    
Sbjct: 296 NNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHY 355

Query: 320 AVRPLIEMLQSPDSQLKEMSAFALGR-LAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQH 378
            +  ++++L  P       +   L R LA    N A + + G I  L++LL   +   Q 
Sbjct: 356 GLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQR 415

Query: 379 NAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNH 438
             +         E    + +  G    L             +AR +           +  
Sbjct: 416 RTSMGGTQQQFVEGVRMEEIVEGCTGALHI-----------LARDVHNRIVIRGLNTIPL 464

Query: 439 LLYLLRVADRAVKRRVTLALAHLCAPDDCKTIFIDNNGLELLLGLLESTSVKQREESSVA 498
            + LL      ++R     L  L    +             L  LL S +      ++  
Sbjct: 465 FVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAV 524

Query: 499 LYKLA 503
           L++++
Sbjct: 525 LFRMS 529

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  209 bits (534), Expect = 6e-60
 Identities = 78/411 (18%), Positives = 153/411 (37%), Gaps = 62/411 (15%)

Query: 26  KPDRKVSIVESGATQQDLVQDIRAQIDILNSKFSSDETDRAAAKTASHALVEFA-KNEEI 84
           +   K+++  +G         ++  + +LN   ++ +            L   A  N+E 
Sbjct: 132 QEGAKMAVRLAGG--------LQKMVALLNK--TNVKFLAITTD----CLQILAYGNQES 177

Query: 85  VSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGA 144
             +I+ +G   ALV  ++T             ++    +  L +L+V   ++  IV+ G 
Sbjct: 178 KLIILASGGPQALVNIMRTYT---------YEKLLWTTSRVLKVLSVCSSNKPAIVEAGG 228

Query: 145 LPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKF 204
           +  L   L       + R    +++     + NL+        +  +E  +  LV+LL  
Sbjct: 229 MQALGLHLT----DPSQR----LVQNCLWTLRNLSDAATK---QEGMEGLLGTLVQLLGS 277

Query: 205 VDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLR--SEDASVHFEAVGVIGNL 262
            D+ V   AAG L  L   N +NK ++ +   +  LV  +    +   +   A+  + +L
Sbjct: 278 DDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHL 337

Query: 263 V---HSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRG 319
                 +   +  V L   L  V+ LL         +A + L +  A    +   + ++G
Sbjct: 338 TSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQG 397

Query: 320 AVRPLIEMLQSPDSQLK----------------------EMSAFALGRLAQDTHNQAGIA 357
           A+  L+++L       +                      E    AL  LA+D HN+  I 
Sbjct: 398 AIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIR 457

Query: 358 QDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQD 408
               I   ++LL S   ++Q  AA  L  LA +++    +   G    L +
Sbjct: 458 GLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTE 508

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  181 bits (462), Expect = 7e-50
 Identities = 82/391 (20%), Positives = 142/391 (36%), Gaps = 59/391 (15%)

Query: 24  EEKPDRKVSIVESGATQQDLVQDIRAQIDILNSKFSSDETDRAAAKTASHALVEFAKNEE 83
               + K+ I+ SG          +A ++I+ +      T      T S  L   +    
Sbjct: 172 YGNQESKLIILASGG--------PQALVNIMRTY-----TYEKLLWTTSRVLKVLSVCSS 218

Query: 84  IVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTG 143
               IV+ G + AL  HL  P Q           + + C + L  L+     Q      G
Sbjct: 219 NKPAIVEAGGMQALGLHLTDPSQ----------RLVQNCLWTLRNLSDAATKQ--EGMEG 266

Query: 144 ALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLK 203
            L  LV LL       +      V+  AA  ++NL   N   K  V    GI  LV  + 
Sbjct: 267 LLGTLVQLL----GSDDIN----VVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVL 318

Query: 204 F--VDVKVQRAAAGALRTLAFKNDENKK---LIVECNALPTLVLMLRSEDASVHFEAVGV 258
                  +   A  ALR L  ++ E +     +     LP +V +L         +A   
Sbjct: 319 RAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVG 378

Query: 259 IGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFA------------- 305
           +   +   P+    +   GA+  ++ LL  +  +++R  ++   Q               
Sbjct: 379 LIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEG 438

Query: 306 --------AADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIA 357
                   A D ++++ I     +   +++L SP   ++ ++A  L  LAQD      I 
Sbjct: 439 CTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIE 498

Query: 358 QDGGILPLLKLLDSKNGSLQHNAAFALYGLA 388
            +G   PL +LL S+N  +   AA  L+ ++
Sbjct: 499 AEGATAPLTELLHSRNEGVATYAAAVLFRMS 529

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  159 bits (404), Expect = 5e-42
 Identities = 56/301 (18%), Positives = 104/301 (34%), Gaps = 18/301 (5%)

Query: 216 ALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVIL 275
           A+  L    +      +   A+P L  +L  ED  V  +A  ++  L     S    +  
Sbjct: 1   AVVNLI---NYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRS 57

Query: 276 AGALQPVIGLLSSSCS-ESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQ 334
              +  ++  + ++   E+ R  A  L   +       + I + G +  L++ML SP   
Sbjct: 58  PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREG-LLAIFKSGGIPALVKMLGSPVDS 116

Query: 335 LKEMSAFALGRLAQDT-HNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLA-DNED 392
           +   +   L  L       +  +   GG+  ++ LL+  N          L  LA  N++
Sbjct: 117 VLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQE 176

Query: 393 NVADLVRVGGVQKLQD--GEFTVQPTKDCVARTLKRL-------EEKVHGRVLNHLLYLL 443
           +   ++  GG Q L +    +T +      +R LK L          V    +  L   L
Sbjct: 177 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHL 236

Query: 444 RVADRAVKRRVTLALAHLCAPDDCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLA 503
               + + +     L +L   D           L  L+ LL S  +     ++  L  L 
Sbjct: 237 TDPSQRLVQNCLWTLRNLS--DAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLT 294

Query: 504 T 504
            
Sbjct: 295 C 295

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  248 bits (633), Expect = 6e-72
 Identities = 93/438 (21%), Positives = 164/438 (37%), Gaps = 33/438 (7%)

Query: 89  VDNGAVPALVEHLQTPPQLTNAQ-IPYEHEVEKECAFALGLLAVKPEHQQI--IVDTGAL 145
           V     P  ++     P        P   +   E +  L    V   + Q    + T A+
Sbjct: 93  VRAAMFPETLDEGMQIPSTQFDSAHPTNVQRLAEPSQMLKHAVVNLINYQDDAELATRAI 152

Query: 146 PHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKF- 204
           P L  LL       +      V+ +AA  +  L+ + A+    +R    +  +V  ++  
Sbjct: 153 PELTKLLN----DEDQV----VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT 204

Query: 205 VDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVH 264
            DV+  R  +G L  L+  + E    I +   +P LV ML S   SV F A+  + NL+ 
Sbjct: 205 NDVETARCTSGTLHNLS-HHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLL 263

Query: 265 SSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPL 324
                K  V LAG LQ ++ LL+ +  +        L   A  +  SK+ I+  G  + L
Sbjct: 264 HQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQAL 323

Query: 325 IEMLQSPD-SQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFA 383
           + ++++    +L   ++  L  L+  + N+  I + GG+  L   L   +  L  N  + 
Sbjct: 324 VNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWT 383

Query: 384 LYGLADNEDNVADLVRVGG--VQKLQDGEFTVQPTKDCVARTLKRL--------EEKVHG 433
           L  L+D       +  + G  VQ L   +  V     C A  L  L              
Sbjct: 384 LRNLSDAATKQEGMEGLLGTLVQLLGSDDINVV---TCAAGILSNLTCNNYKNKMMVCQV 440

Query: 434 RVLNHLLYLLRVA--DRAVKRRVTLALAHLCA----PDDCKTIFIDNNGLELLLGLLEST 487
             +  L+  +  A     +      AL HL +     +  +     + GL +++ LL   
Sbjct: 441 GGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPP 500

Query: 488 SVKQREESSVALYKLATK 505
           S     +++V L +    
Sbjct: 501 SHWPLIKATVGLIRNLAL 518

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  228 bits (582), Expect = 9e-65
 Identities = 93/454 (20%), Positives = 158/454 (34%), Gaps = 42/454 (9%)

Query: 60  SDETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVE 119
            +  D   A+  S  L   + + E +  I  +G +PALV  L +P             V 
Sbjct: 202 QNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVD----------SVL 251

Query: 120 KECAFALGLLAV-KPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNL 178
                 L  L + +   +  +   G L  +V+LL +     N + L        D +  L
Sbjct: 252 FHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK----TNVKFL----AITTDCLQIL 303

Query: 179 AHENANIKTRVRVEDGIPPLVELLKFVDV-KVQRAAAGALRTLAFKNDENKKLIVECNAL 237
           A+ N   K  +    G   LV +++     K+    +  L+ L+     NK  IVE   +
Sbjct: 304 AYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLS-VCSSNKPAIVEAGGM 362

Query: 238 PTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREA 297
             L L L      +    +  + NL   S +  K+  + G L  ++ LL S        A
Sbjct: 363 QALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTLVQLLGSDDINVVTCA 419

Query: 298 ALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQ--SPDSQLKEMSAFALGRLAQDTHN--- 352
           A +L      +  +K+ + Q G +  L+  +        + E +  AL  L     +   
Sbjct: 420 AGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEM 479

Query: 353 -QAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYG-LADNEDNVADLVRVGGVQKLQDGE 410
            Q  +    G+  ++KLL   +      A   L   LA    N A L   G + +L    
Sbjct: 480 AQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRL---- 535

Query: 411 FTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPDDCKTI 470
             VQ        T +R              ++  V    +    T AL  L      + +
Sbjct: 536 --VQLLVRAHQDTQRRT-----SMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIV 588

Query: 471 FIDNNGLELLLGLLESTSVKQREESSVALYKLAT 504
               N + L + LL S     +  ++  L +LA 
Sbjct: 589 IRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ 622

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  227 bits (579), Expect = 2e-64
 Identities = 79/492 (16%), Positives = 163/492 (33%), Gaps = 68/492 (13%)

Query: 27  PDRKVSIVESGATQQDLVQDIRAQIDILNSKFSSDETDRAAAKTASHALVEFAKNEE-IV 85
            +  ++I +SG         I A +++L S         +    A   L     ++E   
Sbjct: 224 REGLLAIFKSGG--------IPALVNMLGS------PVDSVLFHAITTLHNLLLHQEGAK 269

Query: 86  SLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAV-KPEHQQIIVDTGA 144
             +   G +  +V  L               +        L +LA    E + II+ +G 
Sbjct: 270 MAVRLAGGLQKMVALLNKT----------NVKFLAITTDCLQILAYGNQESKLIILASGG 319

Query: 145 LPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKF 204
              LV++++       +     ++   +  +  L+  ++N K  +    G+  L   L  
Sbjct: 320 PQALVNIMR-------TYTYEKLLWTTSRVLKVLSVCSSN-KPAIVEAGGMQALGLHLTD 371

Query: 205 VDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVH 264
              ++ +     LR L+   D   K       L TLV +L S+D +V   A G++ NL  
Sbjct: 372 PSQRLVQNCLWTLRNLS---DAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTC 428

Query: 265 SSPSIKKEVILAGALQPVIGLLSSSCS--ESKREAALLLGQFAAADSNSKVH---IVQRG 319
           ++   K  V   G ++ ++  +  +    +    A   L    +   ++++    +    
Sbjct: 429 NNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHY 488

Query: 320 AVRPLIEMLQSPDSQLKEMSAFALGR-LAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQH 378
            +  ++++L  P       +   L R LA    N A + + G I  L++LL   +   Q 
Sbjct: 489 GLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQR 548

Query: 379 NAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGR---- 434
             +         E                     ++   +     L  L   +H R    
Sbjct: 549 RTSMGGTQQQFVEG------------------VRMEEIVEACTGALHILARDIHNRIVIR 590

Query: 435 ---VLNHLLYLLRVADRAVKRRVTLALAHLCAPDDCKTIFIDNNGLELLLGLLESTSVKQ 491
               +   + LL      ++R     L  L    +             L  LL S +   
Sbjct: 591 GLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGV 650

Query: 492 REESSVALYKLA 503
              ++  L++++
Sbjct: 651 ATYAAAVLFRMS 662

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  223 bits (569), Expect = 6e-63
 Identities = 77/475 (16%), Positives = 158/475 (33%), Gaps = 39/475 (8%)

Query: 47  IRAQIDILNSKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQ 106
                   ++  ++ +     ++   HA+V     ++     +   A+P L + L    Q
Sbjct: 107 QIPSTQFDSAHPTNVQRLAEPSQMLKHAVVNLINYQDDA--ELATRAIPELTKLLNDEDQ 164

Query: 107 LTNAQIPYEHEVEKECAFALGLLAVK-PEHQQIIVDTGALPHLVSLLKQYKNGGNSRALS 165
                      V  + A  +  L+ K      I+     +  +V  ++   +        
Sbjct: 165 ----------VVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTND-------V 207

Query: 166 GVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKND 225
              R  +  + NL+H        +    GIP LV +L      V   A   L  L    +
Sbjct: 208 ETARCTSGTLHNLSHHREG-LLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQE 266

Query: 226 ENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGL 285
             K  +     L  +V +L   +          +  L + +   K  ++ +G  Q ++ +
Sbjct: 267 GAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNI 326

Query: 286 LSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGR 345
           + +   E        + +  +  S++K  IV+ G ++ L   L  P  +L +   + L  
Sbjct: 327 MRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRN 386

Query: 346 LAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLA-DNEDNVADLVRVGGVQ 404
           L+     Q G+   G +  L++LL S + ++   AA  L  L  +N  N   + +VGG++
Sbjct: 387 LSDAATKQEGME--GLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIE 444

Query: 405 KLQD---GEFTVQPTKDCVARTLKRL-----------EEKVHGRVLNHLLYLLRVADRAV 450
            L          +   +     L+ L                   L  ++ LL       
Sbjct: 445 ALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWP 504

Query: 451 KRRVTLALAHLCA-PDDCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLAT 504
             + T+ L    A          +   +  L+ LL       +  +S+   +   
Sbjct: 505 LIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQF 559

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  206 bits (524), Expect = 8e-57
 Identities = 88/502 (17%), Positives = 171/502 (34%), Gaps = 97/502 (19%)

Query: 26  KPDRKVSIVESGATQQDLVQDIRAQIDILNSKFSSDETDRAAAKTASHALVEFAK-NEEI 84
           +   K+++  +G         ++  + +LN   ++ +            L   A  N+E 
Sbjct: 265 QEGAKMAVRLAGG--------LQKMVALLNK--TNVKFLAITTD----CLQILAYGNQES 310

Query: 85  VSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGA 144
             +I+ +G   ALV  ++T             ++    +  L +L+V   ++  IV+ G 
Sbjct: 311 KLIILASGGPQALVNIMRTYT---------YEKLLWTTSRVLKVLSVCSSNKPAIVEAGG 361

Query: 145 LPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKF 204
           +  L   L       + R    +++     + NL+        +  +E  +  LV+LL  
Sbjct: 362 MQALGLHLT----DPSQR----LVQNCLWTLRNLSDAATK---QEGMEGLLGTLVQLLGS 410

Query: 205 VDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLR--SEDASVHFEAVGVIGNL 262
            D+ V   AAG L  L   N +NK ++ +   +  LV  +    +   +   A+  + +L
Sbjct: 411 DDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHL 470

Query: 263 V---HSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRG 319
                 +   +  V L   L  V+ LL         +A + L +  A    +   + ++G
Sbjct: 471 TSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQG 530

Query: 320 AVRPLIEMLQSPDSQLK----------------------EMSAFALGRLAQDTHNQAGIA 357
           A+  L+++L       +                      E    AL  LA+D HN+  I 
Sbjct: 531 AIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIR 590

Query: 358 QDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTK 417
               I   ++LL S   ++Q  AA  L  LA +++    +   G    L +         
Sbjct: 591 GLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTE--------- 641

Query: 418 DCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPDDCKTIFIDNNGL 477
                                   LL   +  V       L  +   +D    +     +
Sbjct: 642 ------------------------LLHSRNEGVATYAAAVLFRMS--EDKPQDYKKRLSV 675

Query: 478 ELLLGLLESTSVKQREESSVAL 499
           EL   L  +  +   E   + L
Sbjct: 676 ELTSSLFRTEPMTWNETGDLGL 697

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  191 bits (485), Expect = 1e-51
 Identities = 78/396 (19%), Positives = 143/396 (36%), Gaps = 59/396 (14%)

Query: 24  EEKPDRKVSIVESGATQQDLVQDIRAQIDILNSKFSSDETDRAAAKTASHALVEFAKNEE 83
               + K+ I+ SG          +A ++I+ +          +       L   +    
Sbjct: 305 YGNQESKLIILASGG--------PQALVNIMRTYTYEKLLWTTSR-----VLKVLSVCSS 351

Query: 84  IVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTG 143
               IV+ G + AL  HL  P Q           + + C + L  L+     Q      G
Sbjct: 352 NKPAIVEAGGMQALGLHLTDPSQ----------RLVQNCLWTLRNLSDAATKQ--EGMEG 399

Query: 144 ALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLK 203
            L  LV LL       +      V+  AA  ++NL   N   K  V    GI  LV  + 
Sbjct: 400 LLGTLVQLL----GSDDIN----VVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVL 451

Query: 204 F--VDVKVQRAAAGALRTLAFKNDENKKL---IVECNALPTLVLMLRSEDASVHFEAVGV 258
                  +   A  ALR L  ++ + +     +     LP +V +L         +A   
Sbjct: 452 RAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVG 511

Query: 259 IGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFA------------- 305
           +   +   P+    +   GA+  ++ LL  +  +++R  ++   Q               
Sbjct: 512 LIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEA 571

Query: 306 --------AADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIA 357
                   A D ++++ I     +   +++L SP   ++ ++A  L  LAQD      I 
Sbjct: 572 CTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIE 631

Query: 358 QDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDN 393
            +G   PL +LL S+N  +   AA  L+ +++++  
Sbjct: 632 AEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQ 667

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  163 bits (414), Expect = 2e-42
 Identities = 54/347 (15%), Positives = 103/347 (29%), Gaps = 37/347 (10%)

Query: 174 AITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAA--AGALRTLAFK-NDENKKL 230
           A+T      A +      E    P  +        VQR A  +  L+       +     
Sbjct: 86  AMTRAQRVRAAMFPETLDEGMQIPSTQFDSAHPTNVQRLAEPSQMLKHAVVNLINYQDDA 145

Query: 231 IVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSC 290
            +   A+P L  +L  ED  V  +A  ++  L     S    +     +  ++  + ++ 
Sbjct: 146 ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTN 205

Query: 291 SESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDT 350
                          +      + I + G +  L+ ML SP   +   +   L  L    
Sbjct: 206 DVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQ 265

Query: 351 -HNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLA-DNEDNVADLVRVGGVQKLQD 408
              +  +   GG+  ++ LL+  N          L  LA  N+++   ++  GG Q L  
Sbjct: 266 EGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQAL-- 323

Query: 409 GEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPDDCK 468
                                         +  +       +    +  L  L      K
Sbjct: 324 ------------------------------VNIMRTYTYEKLLWTTSRVLKVLSVCSSNK 353

Query: 469 TIFIDNNGLELLLGLLESTSVKQREESSVALYKLATKATSLSPMDAA 515
              ++  G++ L   L   S +  +     L  L+  AT    M+  
Sbjct: 354 PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGL 400

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  122 bits (308), Expect = 4e-29
 Identities = 63/323 (19%), Positives = 105/323 (32%), Gaps = 52/323 (16%)

Query: 27  PDRKVSIVESGATQQDLVQDIRAQIDILNSKFSSDETDRAAAKTASHALVEFAKNEEIVS 86
              K+ + + G         I A +  +      ++    A     H        E   +
Sbjct: 431 YKNKMMVCQVGG--------IEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQN 482

Query: 87  LIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALP 146
            +  +  +P +V+ L  P             + K     +  LA+ P +   + + GA+P
Sbjct: 483 AVRLHYGLPVVVKLLHPPSHW---------PLIKATVGLIRNLALCPANHAPLREQGAIP 533

Query: 147 HLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVD 206
            LV LL         RA     RR +   T            VR+E+             
Sbjct: 534 RLVQLL--------VRAHQDTQRRTSMGGTQQQFVEG-----VRMEE------------- 567

Query: 207 VKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSS 266
             +  A  GAL  LA ++  N+ +I   N +P  V +L S   ++   A GV+  L    
Sbjct: 568 --IVEACTGALHILA-RDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD- 623

Query: 267 PSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIE 326
               + +   GA  P+  LL S        AA +L + +      K    ++     L  
Sbjct: 624 KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSE----DKPQDYKKRLSVELTS 679

Query: 327 MLQSPDS-QLKEMSAFALGRLAQ 348
            L   +     E     L   AQ
Sbjct: 680 SLFRTEPMTWNETGDLGLDIGAQ 702

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  242 bits (620), Expect = 4e-71
 Identities = 84/386 (21%), Positives = 146/386 (37%), Gaps = 34/386 (8%)

Query: 134 EHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVED 193
                 + T A+P L  LL       +      V+ +AA  +  L+ + A+    +R   
Sbjct: 5   YQDDAELATRAIPELTKLLN----DEDQV----VVNKAAVMVHQLSKKEASRHAIMRSPQ 56

Query: 194 GIPPLVELLKF-VDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVH 252
            +  +V  ++   DV+  R  AG L  L+  + E    I +   +P LV ML S   SV 
Sbjct: 57  MVSAIVRTMQNTNDVETARCTAGTLHNLS-HHREGLLAIFKSGGIPALVKMLGSPVDSVL 115

Query: 253 FEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSK 312
           F A+  + NL+      K  V LAG LQ ++ LL+ +  +        L   A  +  SK
Sbjct: 116 FYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESK 175

Query: 313 VHIVQRGAVRPLIEMLQSPD-SQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDS 371
           + I+  G  + L+ ++++    +L   ++  L  L+  + N+  I + GG+  L   L  
Sbjct: 176 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTD 235

Query: 372 KNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKL----QDGEFTVQPTKDCVARTLKRL 427
            +  L  N  + L  L+D           G +  L       +  V     C A  L  L
Sbjct: 236 PSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVV---TCAAGILSNL 290

Query: 428 --------EEKVHGRVLNHLLYLLRVAD--RAVKRRVTLALAHLCAPDDC----KTIFID 473
                           +  L+  +  A     +      AL HL +        +     
Sbjct: 291 TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRL 350

Query: 474 NNGLELLLGLLESTSVKQREESSVAL 499
           + GL +++ LL   S     +++V L
Sbjct: 351 HYGLPVVVKLLHPPSHWPLIKATVGL 376

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  224 bits (572), Expect = 3e-64
 Identities = 92/454 (20%), Positives = 158/454 (34%), Gaps = 42/454 (9%)

Query: 60  SDETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVE 119
            +  D   A+  +  L   + + E +  I  +G +PALV+ L +P             V 
Sbjct: 66  QNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVD----------SVL 115

Query: 120 KECAFALGLLAV-KPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNL 178
                 L  L + +   +  +   G L  +V+LL +     N + L        D +  L
Sbjct: 116 FYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK----TNVKFL----AITTDCLQIL 167

Query: 179 AHENANIKTRVRVEDGIPPLVELLKFVDV-KVQRAAAGALRTLAFKNDENKKLIVECNAL 237
           A+ N   K  +    G   LV +++     K+    +  L+ L+     NK  IVE   +
Sbjct: 168 AYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLS-VCSSNKPAIVEAGGM 226

Query: 238 PTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREA 297
             L L L      +    +  + NL   S +  K+  + G L  ++ LL S        A
Sbjct: 227 QALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTLVQLLGSDDINVVTCA 283

Query: 298 ALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQ--SPDSQLKEMSAFALGRLAQDTHN--- 352
           A +L      +  +K+ + Q G +  L+  +        + E +  AL  L         
Sbjct: 284 AGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEM 343

Query: 353 -QAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYG-LADNEDNVADLVRVGGVQKLQDGE 410
            Q  +    G+  ++KLL   +      A   L   LA    N A L   G + +L    
Sbjct: 344 AQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRL---- 399

Query: 411 FTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPDDCKTI 470
             VQ        T +R              ++  V    +    T AL  L      + +
Sbjct: 400 --VQLLVRAHQDTQRR-----TSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIV 452

Query: 471 FIDNNGLELLLGLLESTSVKQREESSVALYKLAT 504
               N + L + LL S     +  ++  L +LA 
Sbjct: 453 IRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ 486

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  220 bits (562), Expect = 6e-63
 Identities = 79/485 (16%), Positives = 161/485 (33%), Gaps = 54/485 (11%)

Query: 27  PDRKVSIVESGATQQDLVQDIRAQIDILNSKFSSDETDRAAAKTASHALVEFAKNEE-IV 85
            +  ++I +SG         I A + +L S         +    A   L     ++E   
Sbjct: 88  REGLLAIFKSGG--------IPALVKMLGS------PVDSVLFYAITTLHNLLLHQEGAK 133

Query: 86  SLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVK-PEHQQIIVDTGA 144
             +   G +  +V  L               +        L +LA    E + II+ +G 
Sbjct: 134 MAVRLAGGLQKMVALLNKT----------NVKFLAITTDCLQILAYGNQESKLIILASGG 183

Query: 145 LPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKF 204
              LV++++       +     ++   +  +  L+  ++N K  +    G+  L   L  
Sbjct: 184 PQALVNIMR-------TYTYEKLLWTTSRVLKVLSVCSSN-KPAIVEAGGMQALGLHLTD 235

Query: 205 VDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVH 264
              ++ +     LR L+   D   K       L TLV +L S+D +V   A G++ NL  
Sbjct: 236 PSQRLVQNCLWTLRNLS---DAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTC 292

Query: 265 SSPSIKKEVILAGALQPVIGLLSSSCS--ESKREAALLLGQFAAADSNSKVH---IVQRG 319
           ++   K  V   G ++ ++  +  +    +    A   L    +    +++    +    
Sbjct: 293 NNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHY 352

Query: 320 AVRPLIEMLQSPDSQLKEMSAFALGR-LAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQH 378
            +  ++++L  P       +   L R LA    N A + + G I  L++LL   +   Q 
Sbjct: 353 GLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQR 412

Query: 379 NAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNH 438
             +         E    + +  G    L             +AR +           +  
Sbjct: 413 RTSMGGTQQQFVEGVRMEEIVEGCTGALHI-----------LARDVHNRIVIRGLNTIPL 461

Query: 439 LLYLLRVADRAVKRRVTLALAHLCAPDDCKTIFIDNNGLELLLGLLESTSVKQREESSVA 498
            + LL      ++R     L  L    +             L  LL S +      ++  
Sbjct: 462 FVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAV 521

Query: 499 LYKLA 503
           L++++
Sbjct: 522 LFRMS 526

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  219 bits (560), Expect = 1e-62
 Identities = 74/433 (17%), Positives = 146/433 (33%), Gaps = 37/433 (8%)

Query: 88  IVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQ-IIVDTGALP 146
            +   A+P L + L    Q           V  + A  +  L+ K   +  I+     + 
Sbjct: 10  ELATRAIPELTKLLNDEDQ----------VVVNKAAVMVHQLSKKEASRHAIMRSPQMVS 59

Query: 147 HLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVD 206
            +V  ++   +           R  A  + NL+H        +    GIP LV++L    
Sbjct: 60  AIVRTMQNTND-------VETARCTAGTLHNLSHHREG-LLAIFKSGGIPALVKMLGSPV 111

Query: 207 VKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSS 266
             V   A   L  L    +  K  +     L  +V +L   +          +  L + +
Sbjct: 112 DSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 171

Query: 267 PSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIE 326
              K  ++ +G  Q ++ ++ +   E        + +  +  S++K  IV+ G ++ L  
Sbjct: 172 QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGL 231

Query: 327 MLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYG 386
            L  P  +L +   + L  L+     Q     +G +  L++LL S + ++   AA  L  
Sbjct: 232 HLTDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSN 289

Query: 387 LA-DNEDNVADLVRVGGVQKL---QDGEFTVQPTKDCVARTLKRL-----------EEKV 431
           L  +N  N   + +VGG++ L          +   +     L+ L               
Sbjct: 290 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVR 349

Query: 432 HGRVLNHLLYLLRVADRAVKRRVTLALAHLCAP-DDCKTIFIDNNGLELLLGLLESTSVK 490
               L  ++ LL         + T+ L    A          +   +  L+ LL      
Sbjct: 350 LHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQD 409

Query: 491 QREESSVALYKLA 503
            +  +S+   +  
Sbjct: 410 TQRRTSMGGTQQQ 422

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  210 bits (536), Expect = 2e-59
 Identities = 90/506 (17%), Positives = 172/506 (33%), Gaps = 97/506 (19%)

Query: 26  KPDRKVSIVESGATQQDLVQDIRAQIDILNSKFSSDETDRAAAKTASHALVEFA-KNEEI 84
           +   K+++  +G         ++  + +LN       T+       +  L   A  N+E 
Sbjct: 129 QEGAKMAVRLAGG--------LQKMVALLNK------TNVKFLAITTDCLQILAYGNQES 174

Query: 85  VSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGA 144
             +I+ +G   ALV  ++T             ++    +  L +L+V   ++  IV+ G 
Sbjct: 175 KLIILASGGPQALVNIMRTYTYE---------KLLWTTSRVLKVLSVCSSNKPAIVEAGG 225

Query: 145 LPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKF 204
           +  L   L       + R    +++     + NL+        +  +E  +  LV+LL  
Sbjct: 226 MQALGLHLT----DPSQR----LVQNCLWTLRNLSDAATK---QEGMEGLLGTLVQLLGS 274

Query: 205 VDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLR--SEDASVHFEAVGVIGNL 262
            D+ V   AAG L  L   N +NK ++ +   +  LV  +    +   +   A+  + +L
Sbjct: 275 DDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHL 334

Query: 263 VHSSPS---IKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRG 319
                     +  V L   L  V+ LL         +A + L +  A    +   + ++G
Sbjct: 335 TSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQG 394

Query: 320 AVRPLIEMLQSPDSQLK----------------------EMSAFALGRLAQDTHNQAGIA 357
           A+  L+++L       +                      E    AL  LA+D HN+  I 
Sbjct: 395 AIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIR 454

Query: 358 QDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTK 417
               I   ++LL S   ++Q  AA  L  LA +++    +   G    L +         
Sbjct: 455 GLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTE--------- 505

Query: 418 DCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPDDCKTIFIDNNGL 477
                                   LL   +  V       L  +   +D    +     +
Sbjct: 506 ------------------------LLHSRNEGVATYAAAVLFRMS--EDKPQDYKKRLSV 539

Query: 478 ELLLGLLESTSVKQREESSVALYKLA 503
           EL   L  +  +   E + + L   A
Sbjct: 540 ELTSSLFRTEPMAWNETADLGLDIGA 565

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  160 bits (406), Expect = 1e-41
 Identities = 54/292 (18%), Positives = 101/292 (34%), Gaps = 15/292 (5%)

Query: 225 DENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIG 284
           +      +   A+P L  +L  ED  V  +A  ++  L     S    +     +  ++ 
Sbjct: 4   NYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVR 63

Query: 285 LLSSSCS-ESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFAL 343
            + ++   E+ R  A  L   +       + I + G +  L++ML SP   +   +   L
Sbjct: 64  TMQNTNDVETARCTAGTLHNLSHHREG-LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 122

Query: 344 GRLAQDT-HNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLA-DNEDNVADLVRVG 401
             L       +  +   GG+  ++ LL+  N          L  LA  N+++   ++  G
Sbjct: 123 HNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASG 182

Query: 402 GVQKLQD--GEFTVQPTKDCVARTLKRL-------EEKVHGRVLNHLLYLLRVADRAVKR 452
           G Q L +    +T +      +R LK L          V    +  L   L    + + +
Sbjct: 183 GPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQ 242

Query: 453 RVTLALAHLCAPDDCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLAT 504
                L +L   D           L  L+ LL S  +     ++  L  L  
Sbjct: 243 NCLWTLRNLS--DAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTC 292

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  130 bits (329), Expect = 7e-32
 Identities = 65/318 (20%), Positives = 105/318 (33%), Gaps = 49/318 (15%)

Query: 59  SSDETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEV 118
           S D      A      L     N +   ++   G + ALV  +               ++
Sbjct: 274 SDDINVVTCAAGILSNLT--CNNYKNKMMVCQVGGIEALVRTVLRAGD--------REDI 323

Query: 119 EKECAFALGLLAVKPEH----QQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADA 174
            +    AL  L  + +     Q  +     LP +V LL    +         +I+     
Sbjct: 324 TEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSH-------WPLIKATVGL 376

Query: 175 ITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQR----------------------A 212
           I NLA   AN    +R +  IP LV+LL       QR                       
Sbjct: 377 IRNLALCPANHA-PLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEG 435

Query: 213 AAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKE 272
             GAL  LA ++  N+ +I   N +P  V +L S   ++   A GV+  L        + 
Sbjct: 436 CTGALHILA-RDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD-KEAAEA 493

Query: 273 VILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPD 332
           +   GA  P+  LL S        AA +L + +    +      +R +V     + ++  
Sbjct: 494 IEAEGATAPLTELLHSRNEGVATYAAAVLFRMS---EDKPQDYKKRLSVELTSSLFRTEP 550

Query: 333 SQLKEMSAFALGRLAQDT 350
               E +   L   AQ  
Sbjct: 551 MAWNETADLGLDIGAQGE 568

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  223 bits (570), Expect = 7e-66
 Identities = 72/383 (18%), Positives = 145/383 (37%), Gaps = 35/383 (9%)

Query: 44  VQDIRAQIDILNS--KFSSDETDRAAAKTASHALVEFAK-NEEIVSLIVDNGAVPALVEH 100
           + ++ +   ++    +F   + +      ++  L   A  N     +++  GAVP  +E 
Sbjct: 56  IDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIEL 115

Query: 101 LQTPPQLTNAQIPYEHEVEKECAFALGLLAVK-PEHQQIIVDTGALPHLVSLLKQYKNGG 159
           L +             +V+++  +ALG +A      +  ++D   LP L+ L  +     
Sbjct: 116 LSSE----------FEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNR-- 163

Query: 160 NSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRT 219
                  + R A  A++NL    +      +V   +  L  LL   D  V   A  AL  
Sbjct: 164 -----LTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSY 218

Query: 220 LAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGAL 279
           L+   ++  + +++      LV +L   D  V   A+  +GN+V       + ++   AL
Sbjct: 219 LSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSAL 278

Query: 280 QPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMS 339
           Q ++ LLSS     K+EA   +    A +      ++       LI +LQ+ + + ++ +
Sbjct: 279 QSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEA 338

Query: 340 AFALGRLAQ--DTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVAD- 396
           A+A+              + + G I PL  LL   +  +   A   L  +    +  A  
Sbjct: 339 AWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKR 398

Query: 397 -----------LVRVGGVQKLQD 408
                      +    G+ K++ 
Sbjct: 399 NGTGINPYCALIEEAYGLDKIEF 421

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  202 bits (516), Expect = 4e-58
 Identities = 89/471 (18%), Positives = 169/471 (35%), Gaps = 53/471 (11%)

Query: 23  FEEKPDRKVSIVESGATQQDLVQDIRAQIDILNSKFSSDETDRAAAKTASHALVEFAKNE 82
           F E     + +   G    D+++ I           S     + +A      L+    N 
Sbjct: 5   FHEAQINNMEMAPGGVITSDMIEMIF----------SKSPEQQLSATQKFRKLLSKEPNP 54

Query: 83  EIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVK-PEHQQIIVD 141
            I  +I   G V   VE L+               ++ E A+ L  +A       +I++ 
Sbjct: 55  PIDEVISTPGVVARFVEFLKRKE---------NCTLQFESAWVLTNIASGNSLQTRIVIQ 105

Query: 142 TGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVEL 201
            GA+P  + LL        S     V  +A  A+ N+A ++   +  V   + +PPL++L
Sbjct: 106 AGAVPIFIELL--------SSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQL 157

Query: 202 LKFVD-VKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIG 260
               + + + R A  AL  L        +       L  L  +L   D  V  +A   + 
Sbjct: 158 FSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALS 217

Query: 261 NLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGA 320
            L        + VI AG  + ++ LL  +  +    A   +G     D      I+   A
Sbjct: 218 YLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSA 277

Query: 321 VRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAG-IAQDGGILPLLKLLDSKNGSLQHN 379
           ++ L+ +L SP   +K+ + + +  +      Q   +        L+ +L +     +  
Sbjct: 278 LQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKE 337

Query: 380 AAFALYGLA--DNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLN 437
           AA+A+       + + +  LV +G ++ L D               L  ++ K+    LN
Sbjct: 338 AAWAITNATSGGSAEQIKYLVELGCIKPLCD--------------LLTVMDSKIVQVALN 383

Query: 438 HLLYLLRVADRAVKRRVTLALAHLCAPDDCKTIFIDNNGLELLLGLLESTS 488
            L  +LR+ ++  KR  T         +    +  +  GL+ +  L    +
Sbjct: 384 GLENILRLGEQEAKRNGT-------GINPYCALIEEAYGLDKIEFLQSHEN 427

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  183 bits (466), Expect = 4e-51
 Identities = 64/389 (16%), Positives = 136/389 (34%), Gaps = 46/389 (11%)

Query: 125 ALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLA--HEN 182
           A+G    +  + ++         ++ ++       +          A      L     N
Sbjct: 2   AMGFHEAQINNMEMAPGGVITSDMIEMI----FSKSPE----QQLSATQKFRKLLSKEPN 53

Query: 183 ANIKTRVRVEDGIPPLVELLKFVD-VKVQRAAAGALRTLAFKNDENKKLIVECNALPTLV 241
             I   +     +   VE LK  +   +Q  +A  L  +A  N    +++++  A+P  +
Sbjct: 54  PPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFI 113

Query: 242 LMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSES-KREAALL 300
            +L SE   V  +AV  +GN+   S   +  V+    L P++ L S     +  R A   
Sbjct: 114 ELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWA 173

Query: 301 LGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDG 360
           L       S           +  L  +L   D+ +   + +AL  L+   +++     D 
Sbjct: 174 LSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDA 233

Query: 361 GILPLL-KLLDSKNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDC 419
           G+   L +LL   +  +   A  A+  +   +D    ++                     
Sbjct: 234 GVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVI--------------------- 272

Query: 420 VARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCA-PDDCKTIFIDNNGLE 478
                      ++   L  LL+LL     ++K+     ++++ A         ID N   
Sbjct: 273 -----------LNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFP 321

Query: 479 LLLGLLESTSVKQREESSVALYKLATKAT 507
            L+ +L++   + R+E++ A+    +  +
Sbjct: 322 ALISILQTAEFRTRKEAAWAITNATSGGS 350

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  220 bits (561), Expect = 1e-65
 Identities = 58/328 (17%), Positives = 116/328 (35%), Gaps = 25/328 (7%)

Query: 81  NEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIV 140
                        +      +  P                     L  L+   EH+  + 
Sbjct: 21  ETCWEWQEAHEPGMDQDKNPMPAP----------VEHQICPAVCVLMKLSFDEEHRHAMN 70

Query: 141 DTGALPHLVSLLK---QYKNGGNSRALSGVIRRAADAITNLAHENANIKTRV-RVEDGIP 196
           + G L  +  LL+   +     N      + R A  A+TNL   +   K  +  ++  + 
Sbjct: 71  ELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMR 130

Query: 197 PLVELLKFVDVKVQRAAAGALRTLAFK-NDENKKLIVECNALPTLV-LMLRSEDASVHFE 254
            LV  LK     +Q+  A  LR L+++ +  +KK + E  ++  L+   L  +  S    
Sbjct: 131 ALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKS 190

Query: 255 AVGVIGNLVHSSPSIKKEVILA-GALQPVIGLLSSSCSESKREAALL-------LGQFAA 306
            +  + NL       K ++    GAL  ++G L+     +              +    A
Sbjct: 191 VLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIA 250

Query: 307 ADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRL-AQDTHNQAGIAQDGGILPL 365
            + + +  + +   ++ L++ L+S    +   +   L  L A++  +Q  +   G +  L
Sbjct: 251 TNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSML 310

Query: 366 LKLLDSKNGSLQHNAAFALYGLADNEDN 393
             L+ SK+  +   +A AL  L  N   
Sbjct: 311 KNLIHSKHKMIAMGSAAALRNLMANRPA 338

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  162 bits (412), Expect = 1e-44
 Identities = 64/348 (18%), Positives = 119/348 (34%), Gaps = 26/348 (7%)

Query: 33  IVESGATQQDLVQDIRAQIDILNSKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDNG 92
           I     T  +  +     +D   +   +          A   L++ + +EE    + + G
Sbjct: 16  IRAYCETCWEWQEAHEPGMDQDKNPMPAPVEH--QICPAVCVLMKLSFDEEHRHAMNELG 73

Query: 93  AVPALVEHLQTPPQLTNAQIPYEHEVEKECA-FALGLLAVKPEH--QQIIVDTGALPHLV 149
            + A+ E LQ   ++      +     +  A  AL  L          +    G +  LV
Sbjct: 74  GLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALV 133

Query: 150 SLLKQYKNGGNSRALSGVIRRAADAITNLA-HENANIKTRVRVEDGIPPLVELLKFV-DV 207
           + L       +      + +  A  + NL+   + N K  +R    +  L+E    V   
Sbjct: 134 AQL----KSESE----DLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKE 185

Query: 208 KVQRAAAGALRTLAFKNDENKKLIV-ECNALPTLVLML----RSEDASVHFEAVGVIGNL 262
              ++   AL  L+    ENK  I     AL  LV  L    ++   ++     G++ N+
Sbjct: 186 STLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNV 245

Query: 263 VH---SSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRG 319
                ++   ++ +     LQ ++  L S        A   L   +A +   +  +   G
Sbjct: 246 SSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMG 305

Query: 320 AVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQ---DGGILP 364
           AV  L  ++ S    +   SA AL  L  +   +   A     G  LP
Sbjct: 306 AVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYKDANIMSPGSSLP 353

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  154 bits (391), Expect = 8e-42
 Identities = 61/351 (17%), Positives = 118/351 (33%), Gaps = 59/351 (16%)

Query: 178 LAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNAL 237
            A+     + +   E G+      +          A   L  L+F ++E++  + E   L
Sbjct: 17  RAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSF-DEEHRHAMNELGGL 75

Query: 238 PTLVLMLRSE-----------DASVHFEAVGVIGNLVHSSPSIKKEVI-LAGALQPVIGL 285
             +  +L+ +             ++   A   + NL     + K  +  + G ++ ++  
Sbjct: 76  QAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQ 135

Query: 286 LSSSCSESKREAALLLGQFAA-ADSNSKVHIVQRGAVRPLIEML-QSPDSQLKEMSAFAL 343
           L S   + ++  A +L   +  AD NSK  + + G+V+ L+E   +       +    AL
Sbjct: 136 LKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSAL 195

Query: 344 GRLAQD-THNQAGIAQDGGILP-LLKLLDSKNGS----LQHNAAFALYGL----ADNEDN 393
             L+   T N+A I    G L  L+  L  ++ +    +  +    L  +    A NED+
Sbjct: 196 WNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDH 255

Query: 394 VADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRR 453
              L     +Q                                  LL  L+     +   
Sbjct: 256 RQILRENNCLQ---------------------------------TLLQHLKSHSLTIVSN 282

Query: 454 VTLALAHLCAPD-DCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLA 503
               L +L A +   +    D   + +L  L+ S        S+ AL  L 
Sbjct: 283 ACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLM 333

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  139 bits (351), Expect = 2e-36
 Identities = 52/302 (17%), Positives = 113/302 (37%), Gaps = 42/302 (13%)

Query: 26  KPDRKVSIVESGATQQDLVQDIRAQIDILNS-----KFSSDETDRAAAKTASHALVEFAK 80
             + + ++ E G         ++A  ++L         ++D       + A  AL     
Sbjct: 62  DEEHRHAMNELGG--------LQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTF 113

Query: 81  NEE--IVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVK--PEHQ 136
            +     +L    G + ALV  L++             ++++  A  L  L+ +     +
Sbjct: 114 GDVANKATLCSMKGCMRALVAQLKSE----------SEDLQQVIASVLRNLSWRADVNSK 163

Query: 137 QIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLA-HENANIKTRVRVEDGI 195
           + + + G++  L+    + K           ++    A+ NL+ H   N      V+  +
Sbjct: 164 KTLREVGSVKALMECALEVKK-------ESTLKSVLSALWNLSAHCTENKADICAVDGAL 216

Query: 196 PPLVELL----KFVDVKVQRAAAGALRTL---AFKNDENKKLIVECNALPTLVLMLRSED 248
             LV  L    +   + +  +  G LR +      N+++++++ E N L TL+  L+S  
Sbjct: 217 AFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHS 276

Query: 249 ASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAAD 308
            ++   A G + NL   +P  ++ +   GA+  +  L+ S        +A  L    A  
Sbjct: 277 LTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 336

Query: 309 SN 310
             
Sbjct: 337 PA 338

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 79.5 bits (196), Expect = 4e-16
 Identities = 32/229 (13%), Positives = 70/229 (30%), Gaps = 50/229 (21%)

Query: 293 SKREAALL--LGQFAA-ADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQD 349
                 +L  L Q  A  ++  +        +      + +P       +   L +L+ D
Sbjct: 3   HHHHHHMLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD 62

Query: 350 THNQAGIAQDGGILPLLKLLDS-----------KNGSLQHNAAFALYGLA-DNEDNVADL 397
             ++  + + GG+  + +LL              + +L+  A  AL  L   +  N A L
Sbjct: 63  EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATL 122

Query: 398 VRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLA 457
             + G                                 +  L+  L+     +++ +   
Sbjct: 123 CSMKG--------------------------------CMRALVAQLKSESEDLQQVIASV 150

Query: 458 LAHLC--APDDCKTIFIDNNGLELLLGLL-ESTSVKQREESSVALYKLA 503
           L +L   A  + K    +   ++ L+    E       +    AL+ L+
Sbjct: 151 LRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLS 199

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  220 bits (561), Expect = 5e-64
 Identities = 76/349 (21%), Positives = 148/349 (42%), Gaps = 24/349 (6%)

Query: 71  ASHALVEFAK-NEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLL 129
           ++ AL   A    E    +VD GA+PA +  L +P             + ++  +ALG +
Sbjct: 121 SAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP----------HAHISEQAVWALGNI 170

Query: 130 AVK-PEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTR 188
           A      + +++  GA+  L++LL        +      +R     ++NL          
Sbjct: 171 AGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACG---YLRNLTWTLSNLCRNKNPAPPL 227

Query: 189 VRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSED 248
             VE  +P LV LL   D +V   +  A+  L    +E  +++V+   +P LV +L + +
Sbjct: 228 DAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATE 287

Query: 249 ASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAAD 308
             +   A+  IGN+V  +    ++VI AGAL     LL++  +  ++EA   +    A  
Sbjct: 288 LPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGR 347

Query: 309 SNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQ--AGIAQDGGILPLL 366
            +    +V  G V  L+ +L   D + ++ +A+A+         +    +   G I PL+
Sbjct: 348 QDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLM 407

Query: 367 KLLDSKNGSLQHNAAFALYGLADNEDNVAD-------LVRVGGVQKLQD 408
            LL +K+  +      A+  +    + + +       +   GG+ K++ 
Sbjct: 408 NLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEA 456

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  168 bits (426), Expect = 3e-45
 Identities = 68/383 (17%), Positives = 131/383 (34%), Gaps = 49/383 (12%)

Query: 134 EHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLA-HENANIKTRVRVE 192
                     ++  +V  +    N  N         +A  A   L   E       +   
Sbjct: 48  IGSNQGTVNWSVEDIVKGI----NSNNLE----SQLQATQAARKLLSREKQPPIDNIIRA 99

Query: 193 DGIPPLVELLKFVD-VKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASV 251
             IP  V  L   D   +Q  +A AL  +A    E  K +V+  A+P  + +L S  A +
Sbjct: 100 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHI 159

Query: 252 HFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSES-----KREAALLLGQFAA 306
             +AV  +GN+     + +  VI  GA+ P++ LL+     +      R     L     
Sbjct: 160 SEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCR 219

Query: 307 ADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILP-L 365
             + +         +  L+ +L   D ++   S +A+  L    + +  +    G++P L
Sbjct: 220 NKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQL 279

Query: 366 LKLLDSKNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLK 425
           +KLL +    +   A  A+  +    D     V   G                       
Sbjct: 280 VKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGA---------------------- 317

Query: 426 RLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCA-PDDCKTIFIDNNGLELLLGLL 484
                     L     LL      +++  T  ++++ A   D     +++  +  L+G+L
Sbjct: 318 ----------LAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVL 367

Query: 485 ESTSVKQREESSVALYKLATKAT 507
                K ++E++ A+    +  T
Sbjct: 368 SKADFKTQKEAAWAITNYTSGGT 390

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  159 bits (403), Expect = 4e-42
 Identities = 74/393 (18%), Positives = 145/393 (36%), Gaps = 29/393 (7%)

Query: 36  SGATQQDLVQDIRAQIDILNSKFSSDETDRAAAKTASHALVEFAK-NEEIVSLIVDNGAV 94
           SG ++Q         I    S  +S       ++ A  AL   A        L++ +GA+
Sbjct: 130 SGTSEQTKAVVDGGAIPAFISLLASPHAH--ISEQAVWALGNIAGDGSAFRDLVIKHGAI 187

Query: 95  PALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAV-KPEHQQIIVDTGALPHLVSLLK 153
             L+  L  P   T           +   + L  L   K     +      LP LV LL 
Sbjct: 188 DPLLALLAVPDLSTL-----ACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLH 242

Query: 154 QYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAA 213
                        V+  +  AI+ L          V  +  +P LV+LL   ++ +   A
Sbjct: 243 HND--------PEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPA 294

Query: 214 AGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEV 273
             A+  +    DE  + +++  AL     +L +   ++  EA   + N+        ++V
Sbjct: 295 LRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQV 354

Query: 274 ILAGALQPVIGLLSSSCSESKREAALLLGQFAA-ADSNSKVHIVQRGAVRPLIEMLQSPD 332
           +  G +  ++G+LS +  ++++EAA  +  + +       V++V  G + PL+ +L + D
Sbjct: 355 VNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKD 414

Query: 333 SQLKEMSAFALGRLAQDTHNQAG-------IAQDGGILPLLKLLDSKNGSLQHNAAFALY 385
           +++ ++   A+  + Q              I + GG+  +  L   +N S+   +   + 
Sbjct: 415 TKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIE 474

Query: 386 GLADNEDNVADLVRVGGVQKLQDGEFTVQPTKD 418
                E+     V    V +     F  Q    
Sbjct: 475 KYFSVEEEEDQNV----VPETTSEGFAFQVQDG 503

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  140 bits (354), Expect = 1e-35
 Identities = 58/345 (16%), Positives = 123/345 (35%), Gaps = 41/345 (11%)

Query: 169 RRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDE-N 227
                   +          +  V   +  +V+ +   +++ Q  A  A R L  +  +  
Sbjct: 33  SPDLGTDDDDKAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPP 92

Query: 228 KKLIVECNALPTLV-LMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLL 286
              I+    +P  V  + +++ + + FE+   + N+   +    K V+  GA+   I LL
Sbjct: 93  IDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLL 152

Query: 287 SSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFA---- 342
           +S  +    +A   LG  A   S  +  +++ GA+ PL+ +L  PD              
Sbjct: 153 ASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTW 212

Query: 343 -LGRLAQDTHNQAGIAQDGGILPLL-KLLDSKNGSLQHNAAFALYGLADNEDNVADLVRV 400
            L  L ++ +    +     ILP L +LL   +  +  ++ +A+  L D  +   ++V  
Sbjct: 213 TLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVK 272

Query: 401 GGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAH 460
            GV                                +  L+ LL   +  +      A+ +
Sbjct: 273 KGV--------------------------------VPQLVKLLGATELPIVTPALRAIGN 300

Query: 461 LCA-PDDCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLAT 504
           +    D+     ID   L +   LL +     ++E++  +  +  
Sbjct: 301 IVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITA 345

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  212 bits (541), Expect = 6e-64
 Identities = 59/257 (22%), Positives = 108/257 (42%), Gaps = 9/257 (3%)

Query: 135 HQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDG 194
                     LP +   L                  A    + +  +       V     
Sbjct: 4   SHHHHHHGSELPQMTQQLNSDDMQ--------EQLSATRKFSQILSDGNEQIQAVIDAGA 55

Query: 195 IPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFE 254
           +P LV+LL   + ++ + A  AL  +A   +E  + +++  ALP LV +L S +  +  E
Sbjct: 56  LPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 115

Query: 255 AVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVH 314
           A+  + N+        + VI AGAL  ++ LLSS   +  +EA   L   A+  +     
Sbjct: 116 ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 175

Query: 315 IVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAG-IAQDGGILPLLKLLDSKN 373
           ++  GA+  L+++L SP+ Q+ + + +AL  +A   + Q   + + G +  L +L   +N
Sbjct: 176 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHEN 235

Query: 374 GSLQHNAAFALYGLADN 390
             +Q  A  AL  L  +
Sbjct: 236 EKIQKEAQEALEKLQSH 252

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  175 bits (445), Expect = 3e-50
 Identities = 54/214 (25%), Positives = 103/214 (48%), Gaps = 2/214 (0%)

Query: 195 IPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFE 254
           +P + + L   D++ Q +A      +    +E  + +++  ALP LV +L S +  +  E
Sbjct: 14  LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73

Query: 255 AVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVH 314
           A+  + N+        + VI AGAL  ++ LLSS   +  +EA   L   A+  +     
Sbjct: 74  ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 133

Query: 315 IVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAG-IAQDGGILPLLKLLDSKN 373
           ++  GA+  L+++L SP+ Q+ + + +AL  +A   + Q   +   G +  L++LL S N
Sbjct: 134 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN 193

Query: 374 GSLQHNAAFALYGLAD-NEDNVADLVRVGGVQKL 406
             +   A +AL  +A    +    +   G ++KL
Sbjct: 194 EQILQEALWALSNIASGGNEQKQAVKEAGALEKL 227

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  157 bits (399), Expect = 6e-44
 Identities = 67/273 (24%), Positives = 119/273 (43%), Gaps = 26/273 (9%)

Query: 37  GATQQDLVQ--DIRAQIDILNSKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDNGAV 94
             +        ++      LNS     +   +A +  S  L +     E +  ++D GA+
Sbjct: 2   RGSHHHHHHGSELPQMTQQLNS--DDMQEQLSATRKFSQILSD---GNEQIQAVIDAGAL 56

Query: 95  PALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVK-PEHQQIIVDTGALPHLVSLLK 153
           PALV+ L +P            ++ +E  +AL  +A    E  Q ++D GALP LV LL 
Sbjct: 57  PALVQLLSSP----------NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS 106

Query: 154 QYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAA 213
                        +++ A  A++N+A         V     +P LV+LL   + ++ + A
Sbjct: 107 SPN--------EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEA 158

Query: 214 AGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEV 273
             AL  +A   +E  + +++  ALP LV +L S +  +  EA+  + N+       K+ V
Sbjct: 159 LWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAV 218

Query: 274 ILAGALQPVIGLLSSSCSESKREAALLLGQFAA 306
             AGAL+ +  L S    + ++EA   L +  +
Sbjct: 219 KEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 66.2 bits (162), Expect = 3e-12
 Identities = 25/166 (15%), Positives = 58/166 (34%), Gaps = 17/166 (10%)

Query: 352 NQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLAD-NEDNVADLVRVGGVQK----L 406
           +         +  + + L+S +   Q +A      +     + +  ++  G +      L
Sbjct: 4   SHHHHHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLL 63

Query: 407 QDGEFTVQPTKDCVARTLKRL----EEK----VHGRVLNHLLYLLRVADRAVKRRVTLAL 458
                 +          L  +     E+    +    L  L+ LL   +  + +    AL
Sbjct: 64  SSPNEQIL---QEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWAL 120

Query: 459 AHLCA-PDDCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLA 503
           +++ +  ++     ID   L  L+ LL S + +  +E+  AL  +A
Sbjct: 121 SNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 166

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  218 bits (557), Expect = 7e-64
 Identities = 72/397 (18%), Positives = 142/397 (35%), Gaps = 32/397 (8%)

Query: 27  PDRKVSIVESGATQQDLVQDIRAQIDILNSKFSSDETDRAAAKTASHALVEFAKNEEIVS 86
            D  +S+ +SG     L+Q +    D  +    +    + A   AS AL     ++    
Sbjct: 60  QDSCISMRQSGCLPL-LIQLLHGN-DKDSVLLGNSRGSKEARARASAALHNIIHSQPDDK 117

Query: 87  LIVDNGAVPALVEHLQTPPQLTNAQIPYEH---------------EVEKECAFALGLLAV 131
                  V  L+E ++   +                                  L  L+ 
Sbjct: 118 RGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSF 177

Query: 132 KPEHQQIIVDTGALPHLVSLLK---QYKNGGNSRALSGVIRRAADAITNLAHENANIKTR 188
             EH+  + + G L  +  LL+   +     N      + R A  A+TNL   +   K  
Sbjct: 178 DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKAT 237

Query: 189 V-RVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFK-NDENKKLIVECNALPTLV-LMLR 245
           +  ++  +  LV  LK     +Q+  A  LR L+++ +  +KK + E  ++  L+   L 
Sbjct: 238 LCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALE 297

Query: 246 SEDASVHFEAVGVIGNLVHSSPSIKKEVILA-GALQPVIGLLSSSCSESKREAALL---- 300
            +  S     +  + NL       K ++    GAL  ++G L+     +           
Sbjct: 298 VKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGI 357

Query: 301 ---LGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRL-AQDTHNQAGI 356
              +    A + + +  + +   ++ L++ L+S    +   +   L  L A++  +Q  +
Sbjct: 358 LRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEAL 417

Query: 357 AQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDN 393
              G +  L  L+ SK+  +   +A AL  L  N   
Sbjct: 418 WDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 454

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  168 bits (427), Expect = 1e-45
 Identities = 78/488 (15%), Positives = 159/488 (32%), Gaps = 83/488 (17%)

Query: 24  EEKPDRKVSIVESGATQQDLVQDIRAQIDILNSKFSSDETDRAAAKTASHALVEFAKNEE 83
                  V           L   +     +L+   + D+ D       S  L+  + +++
Sbjct: 8   HHHSSGLVPRGSHMRLTSHLGTKVEMVYSLLSMLGTHDKDD------MSRTLLAMSSSQD 61

Query: 84  IVSLIVDNGAVPALVEHLQTPPQ--LTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVD 141
               +  +G +P L++ L    +  +         E     + AL  +       +    
Sbjct: 62  SCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRR 121

Query: 142 TGALPHLVSLLKQYKNGGNSRALSG-----------------VIRRAADAITNLAHENAN 184
              + HL+  ++ Y         +                   I  A   +  L+ +  +
Sbjct: 122 EIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEH 181

Query: 185 IKTRVRVEDGIPPLVELLKF-----------VDVKVQRAAAGALRTLAFKNDENKKLIV- 232
            +  +    G+  + ELL+              + ++R A  AL  L F +  NK  +  
Sbjct: 182 -RHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS 240

Query: 233 ECNALPTLVLMLRSEDASVHFEAVGVIGNL-VHSSPSIKKEVILAGALQPVIGLLSSSCS 291
               +  LV  L+SE   +      V+ NL   +  + KK +   G+++ ++        
Sbjct: 241 MKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKK 300

Query: 292 ESKREAAL-LLGQFAAADSNSKVHIVQ-RGAVRPLIEML----QSPDSQLKEMSAFAL-- 343
           ES  ++ L  L   +A  + +K  I    GA+  L+  L    Q+    + E     L  
Sbjct: 301 ESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRN 360

Query: 344 --GRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGL-ADNEDNVADLVRV 400
               +A +  ++  + ++  +  LL+ L S + ++  NA   L+ L A N  +   L  +
Sbjct: 361 VSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDM 420

Query: 401 GGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAH 460
           G V  L++                                 L+    + +      AL +
Sbjct: 421 GAVSMLKN---------------------------------LIHSKHKMIAMGSAAALRN 447

Query: 461 LCAPDDCK 468
           L A    K
Sbjct: 448 LMANRPAK 455

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  162 bits (410), Expect = 2e-43
 Identities = 77/441 (17%), Positives = 146/441 (33%), Gaps = 87/441 (19%)

Query: 117 EVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLK----QYKNGGNSRALSGVIRRAA 172
             + + +  L  ++   +    +  +G LP L+ LL          GNSR       RA+
Sbjct: 44  HDKDDMSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARAS 103

Query: 173 DAITNLAHENANIKTRVRVEDGIPPLVELLKFVD------------------------VK 208
            A+ N+ H   + K   R    +  L ++  + +                          
Sbjct: 104 AALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEH 163

Query: 209 VQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSE-----------DASVHFEAVG 257
               A   L  L+F ++E++  + E   L  +  +L+ +             ++   A  
Sbjct: 164 QICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGM 222

Query: 258 VIGNLVHSSPSIKKEVI-LAGALQPVIGLLSSSCSESKREAALLLGQFAA-ADSNSKVHI 315
            + NL     + K  +  + G ++ ++  L S   + ++  A +L   +  AD NSK  +
Sbjct: 223 ALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTL 282

Query: 316 VQRGAVRPLIEML-QSPDSQLKEMSAFALGRLAQD-THNQAGIAQDGGILPLL-KLLDSK 372
            + G+V+ L+E   +       +    AL  L+   T N+A I    G L  L   L  +
Sbjct: 283 REVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYR 342

Query: 373 NGS----LQHNAAFALYGL----ADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTL 424
           + +    +  +    L  +    A NED+   L     +Q                    
Sbjct: 343 SQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQ-------------------- 382

Query: 425 KRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPD-DCKTIFIDNNGLELLLGL 483
                         LL  L+     +       L +L A +   +    D   + +L  L
Sbjct: 383 -------------TLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNL 429

Query: 484 LESTSVKQREESSVALYKLAT 504
           + S        S+ AL  L  
Sbjct: 430 IHSKHKMIAMGSAAALRNLMA 450

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  118 bits (296), Expect = 2e-28
 Identities = 41/231 (17%), Positives = 89/231 (38%), Gaps = 22/231 (9%)

Query: 47  IRAQIDILNSKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQ 106
           +RA +  L S   S++  +  A    +  + +  +      + + G+V AL+E       
Sbjct: 245 MRALVAQLKS--ESEDLQQVIASVLRN--LSWRADVNSKKTLREVGSVKALMECALEVK- 299

Query: 107 LTNAQIPYEHEVEKECAFALGLLAVKPE--HQQIIVDTGALPHLVSLLKQYKNGGNSRAL 164
                   +    K    AL  L+         I    GAL  LV  L       +    
Sbjct: 300 --------KESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTL----TYRSQTNT 347

Query: 165 SGVIRRAADAITNLAH---ENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLA 221
             +I      + N++     N + +  +R  + +  L++ LK   + +   A G L  L+
Sbjct: 348 LAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLS 407

Query: 222 FKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKE 272
            +N ++++ + +  A+  L  ++ S+   +   +   + NL+ + P+  K+
Sbjct: 408 ARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYKD 458

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 80.4 bits (198), Expect = 5e-16
 Identities = 43/340 (12%), Positives = 101/340 (29%), Gaps = 72/340 (21%)

Query: 169 RRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENK 228
                  + L    ++++    +   +  +  LL  +    +   +  L  ++  + ++ 
Sbjct: 5   HHHHHHSSGLVPRGSHMRLTSHLGTKVEMVYSLLSMLGTHDKDDMSRTLLAMS-SSQDSC 63

Query: 229 KLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSS 288
             + +   LP L+ +L   D                                 V+   S 
Sbjct: 64  ISMRQSGCLPLLIQLLHGNDKD------------------------------SVLLGNSR 93

Query: 289 SCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQ 348
              E++  A+  L     +  + K    +   +  L ++                 R   
Sbjct: 94  GSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQI-----------------RAYC 136

Query: 349 DTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQD 408
           +T  +   A + G+      + +        A   L  L+ +E++   +  +GG+Q +  
Sbjct: 137 ETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAI-- 194

Query: 409 GEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPDD-- 466
                       A  L+   E                    ++R   +AL +L   D   
Sbjct: 195 ------------AELLQVDCEMYGL--------TNDHYSITLRRYAGMALTNLTFGDVAN 234

Query: 467 CKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLATKA 506
             T+      +  L+  L+S S   ++  +  L  L+ +A
Sbjct: 235 KATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRA 274

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 51.1 bits (122), Expect = 9e-07
 Identities = 29/229 (12%), Positives = 67/229 (29%), Gaps = 23/229 (10%)

Query: 291 SESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDT 350
           S      +  L    +    +     +   V  L+ ML + D   K+  +  L  ++   
Sbjct: 4   SHHHHHHSSGLVPRGSHMRLTSHLGTKVEMVYSLLSMLGTHD---KDDMSRTLLAMSSSQ 60

Query: 351 HNQAGIAQDGGILPLLKLLDSK------------NGSLQHNAAFALYGLADNEDNVADLV 398
            +   + Q G +  L++LL               +   +  A+ AL+ +  ++ +     
Sbjct: 61  DSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGR 120

Query: 399 RVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLAL 458
           R   V  L +        +           ++ H   ++     +              L
Sbjct: 121 REIRVLHLLE--------QIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVL 172

Query: 459 AHLCAPDDCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLATKAT 507
             L   ++ +    +  GL+ +  LL+         +      L   A 
Sbjct: 173 MKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAG 221

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score =  206 bits (526), Expect = 8e-59
 Identities = 72/367 (19%), Positives = 144/367 (39%), Gaps = 36/367 (9%)

Query: 60  SDETDRAAAKTASHALVEFAK-NEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEV 118
            +         A+ AL   A        ++VD  AVP  ++ L T             EV
Sbjct: 140 RENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTG----------SVEV 189

Query: 119 EKECAFALGLLAVK-PEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITN 177
           +++  +ALG +A    +++  ++   A+  ++ L    K          +IR A   ++N
Sbjct: 190 KEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNK--------PSLIRTATWTLSN 241

Query: 178 LAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNAL 237
           L            V   +P L +L+  +D +    A  A+  L+    E  + +++    
Sbjct: 242 LCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIP 301

Query: 238 PTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREA 297
             LV +L  E   V   A+  +GN+V  +    + VI AG L  +  LLSS     K+EA
Sbjct: 302 KRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEA 361

Query: 298 ALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAG-- 355
              +    A ++     ++    + PL+++L+  + + K+ + +A+   +     +    
Sbjct: 362 CWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDII 421

Query: 356 --IAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVAD------------LVRVG 401
             +   G I PL  LL+  +  +      AL  +    +   +            + + G
Sbjct: 422 RYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAG 481

Query: 402 GVQKLQD 408
           G++K+ +
Sbjct: 482 GMEKIFN 488

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score =  206 bits (525), Expect = 1e-58
 Identities = 90/513 (17%), Positives = 182/513 (35%), Gaps = 52/513 (10%)

Query: 3   RRERQTSPARRS------LKRKLEQDFEEKPDRKVSIVESGATQQDLVQDIRAQI-DILN 55
           RR+ Q    R++       KR+      +  D       S +  Q     ++ ++  +  
Sbjct: 35  RRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVSADQQFYSQLQQELPQMTQ 94

Query: 56  SKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYE 115
              S D  ++ +A      ++       I  +++  G VP LVE ++             
Sbjct: 95  QLNSDDMQEQLSATVKFRQILSREHRPPI-DVVIQAGVVPRLVEFMRENQ---------P 144

Query: 116 HEVEKECAFALGLLAVK-PEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADA 174
             ++ E A+AL  +A       +++VD  A+P  + LL              V  +A  A
Sbjct: 145 EMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGS--------VEVKEQAIWA 196

Query: 175 ITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVEC 234
           + N+A ++ + +  V   + + P++ L       + R A   L  L           V  
Sbjct: 197 LGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVS 256

Query: 235 NALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESK 294
            ALPTL  ++ S D     +A   I  L        + VI     + ++ LLS   +  +
Sbjct: 257 QALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQ 316

Query: 295 REAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQA 354
             A   +G     +      ++  G +  L  +L SP   +K+ + + +  +      Q 
Sbjct: 317 TPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQI 376

Query: 355 G-IAQDGGILPLLKLLDSKNGSLQHNAAFALYGLA----DNEDNVADLVRVGGVQKLQDG 409
             +     I PL+KLL+      +  A +A+   +       D +  LV  G ++ L D 
Sbjct: 377 QAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCD- 435

Query: 410 EFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPDDCKT 469
                         L+  + ++    L+ L  +L++ +   + R      +         
Sbjct: 436 -------------LLEIADNRIIEVTLDALENILKMGEADKEARGLNINENA-------D 475

Query: 470 IFIDNNGLELLLGLLESTSVKQREESSVALYKL 502
                 G+E +    ++ + K  E++   +   
Sbjct: 476 FIEKAGGMEKIFNCQQNENDKIYEKAYKIIETY 508

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score =  170 bits (433), Expect = 5e-46
 Identities = 73/383 (19%), Positives = 138/383 (36%), Gaps = 44/383 (11%)

Query: 130 AVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLA-HENANIKTR 188
           +V  + Q        LP +   L    N  + +        A      +   E+      
Sbjct: 74  SVSADQQFYSQLQQELPQMTQQL----NSDDMQ----EQLSATVKFRQILSREHRPPIDV 125

Query: 189 VRVEDGIPPLVELLKFVD-VKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSE 247
           V     +P LVE ++      +Q  AA AL  +A       K++V+ +A+P  + +L + 
Sbjct: 126 VIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTG 185

Query: 248 DASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAA 307
              V  +A+  +GN+   S   +  V+   A++P++GL +S+     R A   L      
Sbjct: 186 SVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRG 245

Query: 308 DSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILP-LL 366
                   V   A+  L +++ S D++    + +A+  L+           D  I   L+
Sbjct: 246 KKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLV 305

Query: 367 KLLDSKNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKR 426
           +LL  ++  +Q  A  A+  +    D    +V   G                        
Sbjct: 306 ELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAG------------------------ 341

Query: 427 LEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCA-PDDCKTIFIDNNGLELLLGLLE 485
                   VL  L  LL      +K+     ++++ A   +     ID N +  L+ LLE
Sbjct: 342 --------VLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLE 393

Query: 486 STSVKQREESSVALYKLATKATS 508
               K ++E+  A+   ++    
Sbjct: 394 VAEYKTKKEACWAISNASSGGLQ 416

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score =  155 bits (393), Expect = 1e-40
 Identities = 68/387 (17%), Positives = 138/387 (35%), Gaps = 49/387 (12%)

Query: 27  PDRKVSIVESGATQQDLVQDIRAQIDILNSKFSSDETDRAAAKTASHALVEFAK-NEEIV 85
             +   +V++ A            + +      +   +    + A  AL   A  + +  
Sbjct: 163 SAQTKVVVDADA------------VPLFIQLLYTGSVE--VKEQAIWALGNVAGDSTDYR 208

Query: 86  SLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAV-KPEHQQIIVDTGA 144
             ++   A+  ++    +              + +   + L  L   K       V + A
Sbjct: 209 DYVLQCNAMEPILGLFNSNKP----------SLIRTATWTLSNLCRGKKPQPDWSVVSQA 258

Query: 145 LPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKF 204
           LP L  L+            +  +  A  AI+ L+         V        LVELL  
Sbjct: 259 LPTLAKLIYSMD--------TETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSH 310

Query: 205 VDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVH 264
               VQ  A  A+  +   ND   ++++    LP L L+L S   ++  EA   I N+  
Sbjct: 311 ESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITA 370

Query: 265 SSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHI---VQRGAV 321
            +    + VI A  + P++ LL  +  ++K+EA   +   ++        I   V +G +
Sbjct: 371 GNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCI 430

Query: 322 RPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAG------------IAQDGGILPLLKLL 369
           +PL ++L+  D+++ E++  AL  + +                   I + GG+  +    
Sbjct: 431 KPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQ 490

Query: 370 DSKNGSLQHNAAFALYGLADNEDNVAD 396
            ++N  +   A   +      E++  D
Sbjct: 491 QNENDKIYEKAYKIIETYFGEEEDAVD 517

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  196 bits (500), Expect = 1e-58
 Identities = 52/203 (25%), Positives = 97/203 (47%), Gaps = 1/203 (0%)

Query: 189 VRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSED 248
                 +P +V+ L   D +  ++A   L  +A   +E  + +++  ALP LV +L S +
Sbjct: 8   HHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPN 67

Query: 249 ASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAAD 308
             +  EA+  + N+        + VI AGAL  ++ LLSS   +  +EA   L   A+  
Sbjct: 68  EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 127

Query: 309 SNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQA-GIAQDGGILPLLK 367
           +     ++  GA+  L+++L SP+ Q+ + + +AL  +A   + Q   + + G +  L +
Sbjct: 128 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQ 187

Query: 368 LLDSKNGSLQHNAAFALYGLADN 390
           L   +N  +Q  A  AL  L  +
Sbjct: 188 LQSHENEKIQKEAQEALEKLQSH 210

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  151 bits (384), Expect = 2e-42
 Identities = 53/220 (24%), Positives = 95/220 (43%), Gaps = 19/220 (8%)

Query: 88  IVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVK-PEHQQIIVDTGALP 146
                 +P +V+ L +P          + +  +     L  +A    E  Q ++D GALP
Sbjct: 8   HHHGSELPQMVQQLNSP----------DQQELQSALRKLSQIASGGNEQIQAVIDAGALP 57

Query: 147 HLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVD 206
            LV LL              +++ A  A++N+A         V     +P LV+LL   +
Sbjct: 58  ALVQLLSSPN--------EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN 109

Query: 207 VKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSS 266
            ++ + A  AL  +A   +E  + +++  ALP LV +L S +  +  EA+  + N+    
Sbjct: 110 EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 169

Query: 267 PSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAA 306
              K+ V  AGAL+ +  L S    + ++EA   L +  +
Sbjct: 170 NEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  126 bits (319), Expect = 2e-33
 Identities = 45/183 (24%), Positives = 82/183 (44%), Gaps = 2/183 (1%)

Query: 226 ENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGL 285
            +       + LP +V  L S D      A+  +  +        + VI AGAL  ++ L
Sbjct: 3   GSHHHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQL 62

Query: 286 LSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGR 345
           LSS   +  +EA   L   A+  +     ++  GA+  L+++L SP+ Q+ + + +AL  
Sbjct: 63  LSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSN 122

Query: 346 LAQDTHNQA-GIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLA-DNEDNVADLVRVGGV 403
           +A   + Q   +   G +  L++LL S N  +   A +AL  +A    +    +   G +
Sbjct: 123 IASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGAL 182

Query: 404 QKL 406
           +KL
Sbjct: 183 EKL 185

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  125 bits (316), Expect = 5e-33
 Identities = 52/202 (25%), Positives = 90/202 (44%), Gaps = 20/202 (9%)

Query: 63  TDRAAAKTASHALVEFAK-NEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKE 121
            D+   ++A   L + A    E +  ++D GA+PALV+ L +P            ++ +E
Sbjct: 24  PDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSP----------NEQILQE 73

Query: 122 CAFALG-LLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAH 180
             +AL  + +   E  Q ++D GALP LV LL              +++ A  A++N+A 
Sbjct: 74  ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNE--------QILQEALWALSNIAS 125

Query: 181 ENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTL 240
                   V     +P LV+LL   + ++ + A  AL  +A   +E K+ + E  AL  L
Sbjct: 126 GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKL 185

Query: 241 VLMLRSEDASVHFEAVGVIGNL 262
             +   E+  +  EA   +  L
Sbjct: 186 EQLQSHENEKIQKEAQEALEKL 207

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 95.8 bits (239), Expect = 9e-23
 Identities = 48/196 (24%), Positives = 88/196 (44%), Gaps = 32/196 (16%)

Query: 27  PDRKVSIVESGATQQDLVQDIRAQIDILNSKFSSDETDRAAAKTASHALVEFAKNEEIVS 86
            ++  +++++GA        + A + +L+S    +E     A  A   +   +   E + 
Sbjct: 44  NEQIQAVIDAGA--------LPALVQLLSS---PNEQILQEALWALSNIA--SGGNEQIQ 90

Query: 87  LIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAV-KPEHQQIIVDTGAL 145
            ++D GA+PALV+ L +P            ++ +E  +AL  +A    E  Q ++D GAL
Sbjct: 91  AVIDAGALPALVQLLSSP----------NEQILQEALWALSNIASGGNEQIQAVIDAGAL 140

Query: 146 PHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFV 205
           P LV LL       N +    +++ A  A++N+A      K  V+    +  L +L    
Sbjct: 141 PALVQLLSS----PNEQ----ILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE 192

Query: 206 DVKVQRAAAGALRTLA 221
           + K+Q+ A  AL  L 
Sbjct: 193 NEKIQKEAQEALEKLQ 208

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 88.5 bits (220), Expect = 4e-20
 Identities = 38/204 (18%), Positives = 71/204 (34%), Gaps = 34/204 (16%)

Query: 311 SKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDT-HNQAGIAQDGGILPLLKLL 369
           S  H      +  +++ L SPD Q  + +   L ++A         +   G +  L++LL
Sbjct: 4   SHHHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLL 63

Query: 370 DSKNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEE 429
            S N  +   A +AL  +A   +     V   G                           
Sbjct: 64  SSPNEQILQEALWALSNIASGGNEQIQAVIDAGA-------------------------- 97

Query: 430 KVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCA-PDDCKTIFIDNNGLELLLGLLESTS 488
                 L  L+ LL   +  + +    AL+++ +  ++     ID   L  L+ LL S +
Sbjct: 98  ------LPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN 151

Query: 489 VKQREESSVALYKLATKATSLSPM 512
            +  +E+  AL  +A+        
Sbjct: 152 EQILQEALWALSNIASGGNEQKQA 175

>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Length = 172

 Score =  177 bits (450), Expect = 4e-52
 Identities = 54/169 (31%), Positives = 80/169 (47%), Gaps = 8/169 (4%)

Query: 503 ATKATSLSPMDAAPPSPTQQVYLGEQF---VNNPTLSDVTFVVEGKQFYAHRICLLASSD 559
            +   +   M   P        L ++      N   +D    V G++F AH+  L A S 
Sbjct: 4   GSGGQNTMNMVKVPEC-----RLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSP 58

Query: 560 AFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFIYTGNVDVSVDIAQDLLRAADQYLLE 619
            F AMF+   +E     VEI ++   VF+ MM FIYTG       +A DLL AAD+Y LE
Sbjct: 59  VFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALE 118

Query: 620 GLKRLCEYSIAQIISVENIMLMYELSEAYNATTLKQSCILFILEKFDKM 668
            LK +CE ++   +SVEN   +  L++ ++A  LK   + FI      +
Sbjct: 119 RLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHATDV 167

>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Length = 312

 Score =  170 bits (433), Expect = 5e-48
 Identities = 62/218 (28%), Positives = 91/218 (41%), Gaps = 23/218 (10%)

Query: 450 VKRRVTLALAHLCAPDDCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLATKATSL 509
           ++R   L  A+   PDD  T+F + +                     V    +     + 
Sbjct: 112 IRRGFLLDEANGLLPDDKLTLFCEVS---------------------VVQDSVNISGQNT 150

Query: 510 SPMDAAPPSPTQQVYLGEQFVNNPTLSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGY 569
             M   P               N   +D    V G++F AH+  L A S  F AMF+   
Sbjct: 151 MNMVKVPECRLADEL--GGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEM 208

Query: 570 KEKNAKDVEIPNIRWNVFELMMRFIYTGNVDVSVDIAQDLLRAADQYLLEGLKRLCEYSI 629
           +E     VEI ++   VF+ MM FIYTG       +A DLL AAD+Y LE LK +CE ++
Sbjct: 209 EESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDAL 268

Query: 630 AQIISVENIMLMYELSEAYNATTLKQSCILFILEKFDK 667
              +SVEN   +  L++ ++A  LK   + FI      
Sbjct: 269 CSNLSVENAAEILILADLHSADQLKTQAVDFINYHATD 306

>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Length = 145

 Score =  163 bits (415), Expect = 2e-47
 Identities = 53/148 (35%), Positives = 75/148 (50%), Gaps = 8/148 (5%)

Query: 510 SPMDAAPPSPTQQVYLGEQF---VNNPTLSDVTFVVEGKQFYAHRICLLASSDAFRAMFD 566
           S M   P        L ++      N   +D    V G++F AH+  L A S  F AMF+
Sbjct: 2   SNMVKVPEC-----RLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFE 56

Query: 567 GGYKEKNAKDVEIPNIRWNVFELMMRFIYTGNVDVSVDIAQDLLRAADQYLLEGLKRLCE 626
              +E     VEI ++   VF+ MM FIYTG       +A DLL AAD+Y LE LK +CE
Sbjct: 57  HEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCE 116

Query: 627 YSIAQIISVENIMLMYELSEAYNATTLK 654
            ++   +SVEN   +  L++ ++A  LK
Sbjct: 117 DALCSNLSVENAAEILILADLHSADQLK 144

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score =  148 bits (373), Expect = 2e-38
 Identities = 64/408 (15%), Positives = 128/408 (31%), Gaps = 59/408 (14%)

Query: 145 LPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKF 204
           +P  V  L                   A  I +   ++ + K +V    GI  LV+LL+ 
Sbjct: 4   IPKAVQYLS--------SQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRS 55

Query: 205 VDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLV-LMLRSEDASVHFEAVGVIGNLV 263
            +  VQ+AAAGALR L F++  NK      N +   V L+ R+ +A +  +  G++ NL 
Sbjct: 56  PNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNL- 114

Query: 264 HSSPSIKKEVILAGALQPVIGLLSSSCS----------------ESKREAALLLGQFAAA 307
            SS    KE ++A AL  +   +    S                E    A   L   ++A
Sbjct: 115 -SSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA 173

Query: 308 DSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLK 367
           D+  +      G +  L+  +Q+  +  +         +    +    +  +        
Sbjct: 174 DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQL 233

Query: 368 LLDSKNGSLQHNAAFALYGLADNEDNVADLVRVGG--------------------VQKLQ 407
             +++N   + ++       +D   N      +                      +  + 
Sbjct: 234 EYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMG 293

Query: 408 DGEFTVQP-----------TKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTL 456
             +                    +  +       +  + L  +  LL+  +  V R    
Sbjct: 294 KSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGAS 353

Query: 457 ALAHLCAPDDCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLAT 504
            L+++        + + N     +  LL S +        +      T
Sbjct: 354 LLSNMSRHPLLHRV-MGNQVFPEVTRLLTSHTGNTSNSEDILSSACYT 400

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score =  133 bits (335), Expect = 2e-33
 Identities = 57/369 (15%), Positives = 113/369 (30%), Gaps = 49/369 (13%)

Query: 195 IPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFE 254
           IP  V+ L   D K Q   A  ++   F+++  K+ + +   +  LV +LRS + +V   
Sbjct: 4   IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63

Query: 255 AVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVH 314
           A G + NLV  S + K E      ++  + LL  + +   ++    L    ++    K  
Sbjct: 64  AAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEE 123

Query: 315 IVQRGAVRPLIEMLQSP----------------DSQLKEMSAFALGRLAQDTHNQAGIAQ 358
           ++   A+  L + +  P                D ++   +   L  L+     +  +  
Sbjct: 124 LI-ADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRN 182

Query: 359 DGGILPLLKLLDSKNGSLQHNAAFALYGLA---DNEDNVADLVRVGGVQKLQDGEFTVQP 415
             G++  L        +       ++        N     D       ++L+        
Sbjct: 183 YSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYT 242

Query: 416 TKDCV----------------------ARTLKRLEEKVHGRVLNHLLYLLRVADR-AVKR 452
            K                             K      H   +   L L+  + + A   
Sbjct: 243 EKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLE 302

Query: 453 RVTLALAHLCAPD------DCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLATKA 506
               AL +L A          + I +   GL  +  LL+S +       +  L  ++   
Sbjct: 303 ACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP 362

Query: 507 TSLSPMDAA 515
                M   
Sbjct: 363 LLHRVMGNQ 371

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score =  116 bits (291), Expect = 8e-28
 Identities = 58/418 (13%), Positives = 131/418 (31%), Gaps = 61/418 (14%)

Query: 25  EKPDRKVSIVESGATQQDLVQDIRAQIDILNSKFSSDETDRAAAKTASHALVEFAKNEEI 84
           +    K  + + G         I   +D+L S   +    +AAA  A   LV   ++   
Sbjct: 32  QDESAKQQVYQLGG--------ICKLVDLLRS--PNQNVQQAAA-GALRNLV--FRSTTN 78

Query: 85  VSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGA 144
                    +   V  L+              E++K+    L  L+   E ++ ++   A
Sbjct: 79  KLETRRQNGIREAVSLLRRTG---------NAEIQKQLTGLLWNLSSTDELKEELI-ADA 128

Query: 145 LPHLVSLLKQYKNGGNSRALSG--------VIRRAADAITNLAHENANIKTRVRVEDGIP 196
           LP L   +    +G      +         V   A   + NL+  +A  +T       I 
Sbjct: 129 LPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLID 188

Query: 197 PLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAV 256
            L+  ++      +         +   ++ + +L  E        L   + +A     + 
Sbjct: 189 SLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQ-LEYNARNAYTEKSST 247

Query: 257 GVIGNLVH---------------SSPSIKKEVILAGALQPVIGLLSSSCSESKREAA--- 298
           G   N                  ++P     +  + A++  + L+  S  ++  EA    
Sbjct: 248 GCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGA 307

Query: 299 ---LLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAG 355
              L   +   +   S++  ++   +  +  +LQS +S +    A  L  +++       
Sbjct: 308 LQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRV 367

Query: 356 IAQDGGILPLLKLLDSKNGS------LQHNAAFALYGLA-DNEDNVADLVRVGGVQKL 406
           +  +     + +LL S  G+      +  +A + +  L                +  +
Sbjct: 368 MG-NQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNI 424

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score =  103 bits (257), Expect = 1e-23
 Identities = 39/281 (13%), Positives = 90/281 (32%), Gaps = 17/281 (6%)

Query: 27  PDRKVSIVESGATQQDLVQDIRAQIDILNSKFSSDETDRAAAKTASHALVEFAKNEEIVS 86
              + ++         L+         + +  ++   D  + +     L   +   +   
Sbjct: 174 DAGRQTMRNYSGLIDSLMA-------YVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEV 226

Query: 87  LIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALP 146
                                       +  +       L      P+    +  + A+ 
Sbjct: 227 PTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIR 286

Query: 147 HLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVD 206
             ++L+ + K      A +G ++    +   ++   + +      E G+P +  LL+  +
Sbjct: 287 TYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLI--GLKEKGLPQIARLLQSGN 344

Query: 207 VKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRS------EDASVHFEAVGVIG 260
             V R+ A  L  ++ ++    +++      P +  +L S          +   A   + 
Sbjct: 345 SDVVRSGASLLSNMS-RHPLLHRVMGNQ-VFPEVTRLLTSHTGNTSNSEDILSSACYTVR 402

Query: 261 NLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLL 301
           NL+ S P + K+   +  L  +I L  SS S    EAA LL
Sbjct: 403 NLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLL 443

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 86.0 bits (212), Expect = 7e-18
 Identities = 49/402 (12%), Positives = 110/402 (27%), Gaps = 61/402 (15%)

Query: 27  PDRKVSIVESGATQQDLVQDIRAQIDILNSKFSSDETDRAAAKTASHALVEFAKNEEIVS 86
              K+               IR  + +L         +    K  +  L   +  +E+  
Sbjct: 76  TTNKLETRRQNG--------IREAVSLLRR-----TGNAEIQKQLTGLLWNLSSTDELKE 122

Query: 87  LIVDNGAVPALVEHLQTP------PQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIV 140
            ++   A+P L + +  P           ++   + EV       L  L+     +Q + 
Sbjct: 123 ELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMR 181

Query: 141 DT-GALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLV 199
           +  G +  L++ ++               R    ++ N      N+  R+  E       
Sbjct: 182 NYSGLIDSLMAYVQNC---------VAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQ 232

Query: 200 ELLKFVDVKVQRAAAGALRTLAFKNDENKKL---------------IVECNALPTLVLML 244
                 +   ++++ G     + K   N                  +   +A+ T + ++
Sbjct: 233 LEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLM 292

Query: 245 RSEDASVHFEAVGVI------GNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAA 298
                    EA             + SS   +   +    L  +  LL S  S+  R  A
Sbjct: 293 GKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGA 352

Query: 299 LLLGQFAAADSNSKVHIVQRGAVRPLIEMLQS------PDSQLKEMSAFALGRLAQ-DTH 351
            LL   +         +        +  +L S          +   + + +  L      
Sbjct: 353 SLLSNMSRHPLL-HRVMG-NQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQ 410

Query: 352 NQAGIAQDGGILPLLKLLDSKNGSLQHNAAF-ALYGLADNED 392
                     +  ++ L  S        AA   L  +  +++
Sbjct: 411 LAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE 452

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 84.1 bits (207), Expect = 3e-17
 Identities = 48/328 (14%), Positives = 102/328 (31%), Gaps = 21/328 (6%)

Query: 42  DLVQDIRAQIDILNSKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVD-NGAVPALVEH 100
           D V    +     NS  S +  D      A+  L   +  +     + + +G + +L+ +
Sbjct: 134 DRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAY 193

Query: 101 LQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGN 160
           +Q       A    + +  + C   L  L+ + + +          +  +   +  + G 
Sbjct: 194 VQNCV----AASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGC 249

Query: 161 SRALSGVIR-RAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQR-AAAGALR 218
               S  +     D        N      +   D I   + L+          A AGAL+
Sbjct: 250 FSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQ 309

Query: 219 TLAFKN-----DENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEV 273
            L           ++ + ++   LP +  +L+S ++ V      ++ N+  S   +   V
Sbjct: 310 NLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNM--SRHPLLHRV 367

Query: 274 ILAGALQPVIGLLSSSCS------ESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEM 327
           +       V  LL+S         +    A   +    A+             +  +I +
Sbjct: 368 MGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINL 427

Query: 328 LQSPDSQ-LKEMSAFALGRLAQDTHNQA 354
            +S  S    E +   L  +      Q 
Sbjct: 428 CRSSASPKAAEAARLLLSDMWSSKELQG 455

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 41.4 bits (96), Expect = 8e-04
 Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 1/74 (1%)

Query: 433 GRVLNHLLYLLRVADRAVKRRVTLALAHLCAPDD-CKTIFIDNNGLELLLGLLESTSVKQ 491
           G  +   +  L   D   +      + H C  D+  K       G+  L+ LL S +   
Sbjct: 1   GLTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNV 60

Query: 492 REESSVALYKLATK 505
           ++ ++ AL  L  +
Sbjct: 61  QQAAAGALRNLVFR 74

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  144 bits (364), Expect = 5e-36
 Identities = 71/498 (14%), Positives = 154/498 (30%), Gaps = 55/498 (11%)

Query: 42  DLVQDIRAQIDILNSKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDN-GAVPALVEH 100
           D+         +  ++   +     A    +  + E+ K++ +   +        A+   
Sbjct: 215 DITGSSSTIASVCLARIYENMYYDEAKARFTDQIDEYIKDKLLAPDMESKVRVTVAITAL 274

Query: 101 LQTPPQLTNAQIPYE--------------HEVEKECAFALGLLAVKPEHQQIIVDTGALP 146
           L  P  + N  +  E                 ++     L   + K +  + + + G + 
Sbjct: 275 LNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKDKAKALCEQG-VD 333

Query: 147 HLVSLLKQYKNGGNSRALSGVIRRAADAITNLA-HENANIKTRVRVEDGIPPLVELLKFV 205
            L  L              G+  RA   +  L  +   +   R   +     L E  +  
Sbjct: 334 ILKRLYHSKN--------DGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRF 385

Query: 206 ------DVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVI 259
                 D  ++R AA  L  L    +  +KLI +  ++  L+ + R  + S  +  V   
Sbjct: 386 LIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTF 445

Query: 260 GNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRG 319
            NL ++    +    +    +     +         +            +     +   G
Sbjct: 446 VNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFI----------NKRITVLANEG 495

Query: 320 AVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHN 379
               L  + ++     +E+ A  L  +      +  + Q+GG+  LL++        + +
Sbjct: 496 ITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRH 555

Query: 380 AAFALYGLA---DNEDNVADLVRVGGVQKL-----QDGEFTVQPTKDCVARTLKRLEEKV 431
           A  AL  +    + E + +    +  ++ L     QD               L  + E V
Sbjct: 556 ATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESV 615

Query: 432 HGRVLNH-----LLYLLRVADRAVKRRVTLALAHLCAPDDCKTIFIDNNG-LELLLGLLE 485
             R++       + Y L      + R     L +L   +D   +F  NN  ++ L  L E
Sbjct: 616 RQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCE 675

Query: 486 STSVKQREESSVALYKLA 503
               +     + AL  + 
Sbjct: 676 DEDEETATACAGALAIIT 693

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  141 bits (357), Expect = 4e-35
 Identities = 49/309 (15%), Positives = 103/309 (33%), Gaps = 18/309 (5%)

Query: 59  SSDETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEV 118
           +     +       +A+      +E+   +V  G V AL+                  + 
Sbjct: 506 TESHNSQELIARVLNAV---CGLKELRGKVVQEGGVKALLRMALEGT----------EKG 552

Query: 119 EKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNL 178
           ++    AL  + +    +       +L  +  LL   +    +         +  A+TNL
Sbjct: 553 KRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALEN----FESLMALTNL 608

Query: 179 AHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALP 238
           A  N +++ R+  E G+  +   L    + + RAAA  L  L    D  K      + + 
Sbjct: 609 ASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVK 668

Query: 239 TLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVI-LAGALQPVIGLLSSSCSESKREA 297
            L L+   ED        G +  +   S    ++++ +A  L  +  L+++     +   
Sbjct: 669 FLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRG 728

Query: 298 ALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIA 357
            +++     A       + +   +  L  + Q PD    +    A   LA     +    
Sbjct: 729 IVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYRIIER 788

Query: 358 QDGGILPLL 366
            D   +P +
Sbjct: 789 SDNAEIPDV 797

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  141 bits (357), Expect = 4e-35
 Identities = 65/427 (15%), Positives = 137/427 (32%), Gaps = 43/427 (10%)

Query: 37  GATQQDLVQDIRAQIDILNSKFSSDETDRAAAKTASHALVEFAKNEEI-VSLIVDNGAVP 95
            A +           +           D+   + A+  L     + E    LI D  ++ 
Sbjct: 365 AAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIH 424

Query: 96  ALVEHLQTPPQ------------LTNAQIPYEHEVEKECAFALGLLAVKPEHQ------- 136
           AL++  +   Q            L NA    E   E           +  EH+       
Sbjct: 425 ALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFI 484

Query: 137 ----QIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVE 192
                ++ + G    L +L K                  A  +  +      ++ +V  E
Sbjct: 485 NKRITVLANEGITTALCALAK--------TESHNSQELIARVLNAVCG-LKELRGKVVQE 535

Query: 193 DGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKL--IVECNALPTLVLMLRSE-DA 249
            G+  L+ +      K +R A  AL  +    +           + +  L+ +L+ +  A
Sbjct: 536 GGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTA 595

Query: 250 SVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADS 309
             +FE++  + NL   + S+++ +I    +  +   L        R AA  L     ++ 
Sbjct: 596 LENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSED 655

Query: 310 NSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQ--DTHNQAGIAQDGGILPLLK 367
             K+       V+ L  + +  D +     A AL  +        +  +A    +  L  
Sbjct: 656 VIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHT 715

Query: 368 LLDSKNGSLQHNAAFALYGLADNEDNVAD-LVRVGGVQKL----QDGEFTVQPTKDCVAR 422
           L+ + + ++QH     +  + +  + +A  L     ++ L    Q  + T    ++   +
Sbjct: 716 LIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQ 775

Query: 423 TLKRLEE 429
            L   E 
Sbjct: 776 CLAAAER 782

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  108 bits (269), Expect = 2e-24
 Identities = 53/367 (14%), Positives = 119/367 (32%), Gaps = 12/367 (3%)

Query: 147 HLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLV-ELLKFV 205
            + S L+ YK              A+  +  +       + + R  D I   + + L   
Sbjct: 200 DVCSELEDYKYESAMDITGSSSTIASVCLARIYENMYYDEAKARFTDQIDEYIKDKLLAP 259

Query: 206 DVKVQRAAAGALRTLAFKN-DENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVH 264
           D++ +     A+  L     D   +++     L  ++ M  ++D      A   +     
Sbjct: 260 DMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASS 319

Query: 265 SSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAA-DSNSKVHIVQRGAVRP 323
                K + +    +  +  L  S     +  A + L +  +    ++ +     GA   
Sbjct: 320 KKD--KAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALK 377

Query: 324 LIEMLQ------SPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILP-LLKLLDSKNGSL 376
           L E  +        D  ++  +A  L  L  D   +  + +D   +  L+ L    N S 
Sbjct: 378 LAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSC 437

Query: 377 QHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVL 436
            +        L +  +    L  +  + K        +   D V    KR+    +  + 
Sbjct: 438 LYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGIT 497

Query: 437 NHLLYLLRVADRAVKRRVTLALAHLCAPDDCKTIFIDNNGLELLLGLLESTSVKQREESS 496
             L  L +      +  +   L  +C   + +   +   G++ LL +    + K +  ++
Sbjct: 498 TALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHAT 557

Query: 497 VALYKLA 503
            AL ++ 
Sbjct: 558 QALARIG 564

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 59.9 bits (144), Expect = 2e-09
 Identities = 53/351 (15%), Positives = 109/351 (31%), Gaps = 32/351 (9%)

Query: 169 RRAADAITNLAHENANIKTRVRVEDGIPPLVELLK-FVDVKVQRAAAGALRTLAFKNDEN 227
           R AA+ +  LA E       +  +  I  +  L K   D  +       +  L   + E 
Sbjct: 26  RAAANNLVVLAKEQTG-AELLYKDHCIAKVASLTKVEKDQDIYVNMVHLVAALCENSVER 84

Query: 228 KKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLS 287
            K ++    +P  + +L  +  +    A   +  ++++        +     +P      
Sbjct: 85  TKGVLTELGVPWFMRVLDQKHENCVSTAQFCLQTILNA--------LSGLKNKPDSKPDK 136

Query: 288 SSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLA 347
             C+ + RE   LL     + ++  +    R  V  LI       +         +  L 
Sbjct: 137 ELCTRNNREIDTLLTCLVYSITDRTISGAARDGVIELITRNVHYTALEWAERLVEIRGLC 196

Query: 348 Q--DTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADN------EDNVADLVR 399
           +  D  ++    +    + +        GS    A+  L  + +N      +    D + 
Sbjct: 197 RLLDVCSELEDYKYESAMDIT-------GSSSTIASVCLARIYENMYYDEAKARFTDQID 249

Query: 400 VGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGR------VLNHLLYLLRVADRAVKRR 453
                KL   +   +         L      V  +      +L  +L +    D   +R 
Sbjct: 250 EYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRV 309

Query: 454 VTLALAHLCAPDDCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLAT 504
               L    +  D     +   G+++L  L  S +   R  + V L KL +
Sbjct: 310 ACECLIAASSKKDKAK-ALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGS 359

>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Length = 109

 Score =  129 bits (328), Expect = 7e-36
 Identities = 29/100 (29%), Positives = 51/100 (51%), Gaps = 5/100 (5%)

Query: 531 NNPTLSDVTFVV----EGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNV 586
           NN  ++DV FVV      +   AH+  L   S  F AMF G   E  + ++ IP++    
Sbjct: 4   NNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVKS-EIHIPDVEPAA 62

Query: 587 FELMMRFIYTGNVDVSVDIAQDLLRAADQYLLEGLKRLCE 626
           F ++++++Y+  +D+  D     L AA +Y++  L + C 
Sbjct: 63  FLILLKYMYSDEIDLEADTVLATLYAAKKYIVPALAKACV 102

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score =  140 bits (352), Expect = 4e-35
 Identities = 88/461 (19%), Positives = 145/461 (31%), Gaps = 97/461 (21%)

Query: 92  GAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSL 151
           G+   ++   + P          +HE     + A      K            LP ++++
Sbjct: 1   GSPEFMIGE-EVPSDQYYWAPLAQHERG---SLASLDSLRKGGPPPPNWRQPELPEVIAM 56

Query: 152 LKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQR 211
           L           L  V   AA  + +L + N  +KT VR   GIP LV LL     +V  
Sbjct: 57  L--------GFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHL 108

Query: 212 AAAGALRTLAF-KNDENKKLIVECNALPTLVLMLR-SEDASVHFEAVGVIGNLVHSSPSI 269
            A GAL+ ++F ++ +NK  I  C+ +P LV +LR + D  +     G + NL  SS   
Sbjct: 109 GACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNL--SSHDS 166

Query: 270 KKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADS-------------------N 310
            K  I+  AL  +   +    S  +RE                                 
Sbjct: 167 IKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEA 226

Query: 311 SKVHIVQRGAVRPLIEMLQS------PDSQLKEMSAFALGRLAQDTH------------- 351
            +      G V  LI ++Q+       DS+L E     L  L+   H             
Sbjct: 227 RRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAA 286

Query: 352 -------------NQAGIAQDGGILPLLKLL-DSKNGSLQHNAAFALYGLADNEDNVADL 397
                            + Q   +   + LL +SK  ++   +A A+  L          
Sbjct: 287 PNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRY 346

Query: 398 VRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLA 457
           +R    Q+                            + L+ +  LL      V +  + A
Sbjct: 347 IRSALRQE----------------------------KALSAIADLLTNEHERVVKAASGA 378

Query: 458 LAHLCAPDDCKTIFIDNNGLELLLGLLESTSVKQREESSVA 498
           L +L      K + I  + +  L+  L           S  
Sbjct: 379 LRNLAVDARNKEL-IGKHAIPNLVKNLPGGQQNSSWNFSED 418

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score =  136 bits (342), Expect = 8e-34
 Identities = 62/388 (15%), Positives = 131/388 (33%), Gaps = 32/388 (8%)

Query: 143 GALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELL 202
           G+   ++           +        R + A  +   +        R +  +P ++ +L
Sbjct: 1   GSPEFMIGEEVPSDQYYWAPLAQ--HERGSLASLDSLRKGGPPPPNWR-QPELPEVIAML 57

Query: 203 KFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNL 262
            F    V+  AA  L+ L ++ND+ K  + +   +P LV +L      VH  A G + N+
Sbjct: 58  GFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNI 117

Query: 263 -VHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAV 321
                   K  +     +  ++ LL  +      E         ++  + K+ IV   A+
Sbjct: 118 SFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIV-DHAL 176

Query: 322 RPLIEMLQSPDS------------------QLKEMSAFALGRLAQDTHN--QAGIAQDGG 361
             L + +  P S                   +   +A  L  ++ +     +     DG 
Sbjct: 177 HALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGL 236

Query: 362 ILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVA 421
           +  L+ ++ ++ G    ++      +     N++  V     Q  +  E       +   
Sbjct: 237 VDALIFIVQAEIGQKDSDSKLVENCVCLLR-NLSYQVHREIPQAERYQEAAPNVANNTGT 295

Query: 422 RTLKRLEEKVHGRVLNHLLYLLRVADR-AVKRRVTLALAHLCA-----PDDCKTIFIDNN 475
              +  E      V+   + LL+ +   A+      A+ +LCA         ++      
Sbjct: 296 SPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEK 355

Query: 476 GLELLLGLLESTSVKQREESSVALYKLA 503
            L  +  LL +   +  + +S AL  LA
Sbjct: 356 ALSAIADLLTNEHERVVKAASGALRNLA 383

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score =  130 bits (327), Expect = 7e-32
 Identities = 71/427 (16%), Positives = 144/427 (33%), Gaps = 91/427 (21%)

Query: 46  DIRAQIDILNSKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPP 105
           ++   I +L      D     AA    H       N+++ + +     +P LV  L  P 
Sbjct: 49  ELPEVIAMLGF--RLDAVKSNAAAYLQHLCYR---NDKVKTDVRKLKGIPVLVGLLDHPK 103

Query: 106 QLTNAQIPYEHEVEKECAFALGLLAVK--PEHQQIIVDTGALPHLVSLLKQYKNGGNSRA 163
           +          EV      AL  ++     +++  I +   +P LV LL++ ++      
Sbjct: 104 K----------EVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARD------ 147

Query: 164 LSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELL------------------KFV 205
              +       + NL+  ++  K  + V+  +  L + +                     
Sbjct: 148 -MDLTEVITGTLWNLSSHDSI-KMEI-VDHALHALTDEVIIPHSGWEREPNEDCKPRHIE 204

Query: 206 DVKVQRAAAGALRTLAFKNDENKKLIVECNAL-PTLVLMLRSEDASVHFEAVGV------ 258
              V    AG LR ++ +  E ++ + EC+ L   L+ ++++E      ++  V      
Sbjct: 205 WESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCL 264

Query: 259 -------------------------IGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSES 293
                                      N   S     + +     ++  I LL  S + +
Sbjct: 265 LRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPA 324

Query: 294 KREAALLLGQFAAADS-----NSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQ 348
             EA+    Q   A         +  + Q  A+  + ++L +   ++ + ++ AL  LA 
Sbjct: 325 ILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAV 384

Query: 349 DTHNQAGIAQDGGILPLLKLLDSKNGSLQHN-----AAFALYGL----ADNEDNVADLVR 399
           D  N+  I +   I  L+K L     +   N         L  +    A+N +    L  
Sbjct: 385 DARNKELIGK-HAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRE 443

Query: 400 VGGVQKL 406
             G++KL
Sbjct: 444 TQGIEKL 450

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score =  105 bits (263), Expect = 6e-24
 Identities = 66/363 (18%), Positives = 130/363 (35%), Gaps = 28/363 (7%)

Query: 35  ESGATQQDLVQDIRAQIDILNSKFSSDETDRAAAKTASHALVE---FAKNEEIVSLIVDN 91
           E    +    + +           SS+ ++          LV+   F    EI     D+
Sbjct: 196 EDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDS 255

Query: 92  GAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQ-QIIVDTGALPHLVS 150
             V   V  L+      + +IP     ++            P    +++     +   +S
Sbjct: 256 KLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYIS 315

Query: 151 LLKQYKNGGNSRALSGVIRRAADAITNLAHENAN----IKTRVRVEDGIPPLVELLKFVD 206
           LLK+ K          ++  +A AI NL          I++ +R E  +  + +LL    
Sbjct: 316 LLKESKT-------PAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEH 368

Query: 207 VKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFE--------AVGV 258
            +V +AA+GALR LA  +  NK+LI   +A+P LV  L     +  +          +  
Sbjct: 369 ERVVKAASGALRNLA-VDARNKELIG-KHAIPNLVKNLPGGQQNSSWNFSEDTVISILNT 426

Query: 259 IGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESK--REAALLLGQFAAADSNSKVHIV 316
           I  ++  +    K++     ++ ++ +  S     K  R AAL+L          +  + 
Sbjct: 427 INEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTI-WGYKELRKPLE 485

Query: 317 QRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSL 376
           + G  +   ++  +  S+ +   ++    L     NQ    +       +  + S   SL
Sbjct: 486 KEGWKKSDFQVNLNNASRSQSSHSYDDSTLPLIDRNQKSDKKPDREEIQMSNMGSNTKSL 545

Query: 377 QHN 379
            +N
Sbjct: 546 DNN 548

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score =  131 bits (331), Expect = 7e-35
 Identities = 45/210 (21%), Positives = 87/210 (41%), Gaps = 26/210 (12%)

Query: 145 LPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKF 204
           L   VS+L+          L   I  AA  I +   + +  + RV    GI  L++LLK 
Sbjct: 10  LERAVSMLE------ADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKV 63

Query: 205 VDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLR-SEDASVHFEAVGVIGNLV 263
            +  VQRA  GALR L F++++NK  + E N +P L+ +L+ + D     +  G++ NL 
Sbjct: 64  QNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLS 123

Query: 264 HSSPSIKKEVILAGALQPVIGLL----------------SSSCSESKREAALLLGQFAAA 307
            +     K +++  AL  +   +                     +        L   ++A
Sbjct: 124 SNDK--LKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSA 181

Query: 308 DSNSKVHIVQ-RGAVRPLIEMLQSPDSQLK 336
            ++ +  + +  G +  L+  ++   +  +
Sbjct: 182 GADGRKAMRRCDGLIDSLVHYVRGTIADYQ 211

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 98.5 bits (245), Expect = 2e-23
 Identities = 35/245 (14%), Positives = 84/245 (34%), Gaps = 46/245 (18%)

Query: 42  DLVQDIRAQIDILNSKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHL 101
           D+   +   + +L +         AAA    H   +     E    +     +  L++ L
Sbjct: 5   DMEMTLERAVSMLEADHMLPSRISAAATFIQHECFQ---KSEARKRVNQLRGILKLLQLL 61

Query: 102 QTPPQLTNAQIPYEHEVEKECAFALGLLAVK-PEHQQIIVDTGALPHLVSLLKQYKNGGN 160
           +   +          +V++    AL  L  +  +++  + +   +P L+ +LKQ ++   
Sbjct: 62  KVQNE----------DVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRD--- 108

Query: 161 SRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELL----------------KF 204
                   ++    + NL+  +      + + + +  L E +                  
Sbjct: 109 ----LETKKQITGLLWNLSSNDKLK--NLMITEALLTLTENIIIPFSGWPEGDYPKANGL 162

Query: 205 VDVKVQRAAAGALRTLAFKNDENKKLIVEC-NALPTLVLMLRSEDASVHFE------AVG 257
           +D  +     G LR ++    + +K +  C   + +LV  +R   A    +       V 
Sbjct: 163 LDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVC 222

Query: 258 VIGNL 262
           ++ NL
Sbjct: 223 ILHNL 227

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 88.1 bits (218), Expect = 9e-20
 Identities = 31/229 (13%), Positives = 73/229 (31%), Gaps = 63/229 (27%)

Query: 195 IPPLVELLKFVD--VKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVH 252
           +   V +L+          AAA  ++   F+  E +K + +   +  L+ +L+ ++  V 
Sbjct: 10  LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQ 69

Query: 253 FEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSK 312
               G + NL                                             D+++K
Sbjct: 70  RAVCGALRNL------------------------------------------VFEDNDNK 87

Query: 313 VHIVQRGAVRPLIEML-QSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLL-- 369
           + + +   V  L+++L Q+ D + K+     L  L+ +   +  +     +L L + +  
Sbjct: 88  LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMIT-EALLTLTENIII 146

Query: 370 --------------DSKNGSLQHNAAFALYGL-ADNEDNVADLVRVGGV 403
                            +  + +N    L  + +   D    + R  G+
Sbjct: 147 PFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGL 195

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 83.5 bits (206), Expect = 3e-18
 Identities = 33/227 (14%), Positives = 80/227 (35%), Gaps = 24/227 (10%)

Query: 275 LAGALQPVIGLLSSS--CSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPD 332
           +   L+  + +L +          AA  +       S ++  + Q   +  L+++L+  +
Sbjct: 6   MEMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQN 65

Query: 333 SQLKEMSAFALGRLA-QDTHNQAGIAQDGGILPLLKLL-DSKNGSLQHNAAFALYGLADN 390
             ++     AL  L  +D  N+  +A+  G+  LL++L  +++   +      L+ L+ N
Sbjct: 66  EDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN 125

Query: 391 EDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAV 450
           +     ++    +  L                  + +     G           + D  +
Sbjct: 126 DKLKNLMIT-EALLTL-----------------TENIIIPFSGWPEGDYPKANGLLDFDI 167

Query: 451 KRRVTLALAHLC-APDDCKTIFIDNNGL-ELLLGLLESTSVKQREES 495
              VT  L ++  A  D +      +GL + L+  +  T    + + 
Sbjct: 168 FYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDD 214

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score =  131 bits (330), Expect = 5e-34
 Identities = 40/220 (18%), Positives = 82/220 (37%), Gaps = 8/220 (3%)

Query: 167 VIRRAADAITNLAH--ENANIKTRVRVEDGIPPLV-ELLKFVDVKVQRAAAGALRTLAFK 223
               A + + +L    +NA          G+  LV   L+     ++  AA  + T +  
Sbjct: 56  EREGALELLADLCENMDNAA---DFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQN 112

Query: 224 NDENKKLIVECNALPTLVLMLRSE-DASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPV 282
               ++ ++   AL  L+ +L  +   +V  +A+  I  LV    +   + +       +
Sbjct: 113 VAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVL 172

Query: 283 IGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFA 342
           +  +     + K ++A LL          K  +   G V+ L+ ++++  S   E    A
Sbjct: 173 MRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGA 232

Query: 343 LGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAF 382
           L  L  D        ++   L L +LL  +   LQ +  +
Sbjct: 233 LCSLVTDFPQGVRECREPE-LGLEELLRHRCQLLQQHEEY 271

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score =  112 bits (281), Expect = 1e-27
 Identities = 50/286 (17%), Positives = 101/286 (35%), Gaps = 30/286 (10%)

Query: 40  QQDLVQDIRAQIDILNS------KFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDNGA 93
           Q+  V+ +++ + +L+         +    D+   + A   L +  +N +  +       
Sbjct: 23  QRGEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSG 82

Query: 94  VPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVK-PEHQQIIVDTGALPHLVSLL 152
           +  LV                   +    A  +G  +      Q+ ++  GAL  L+ LL
Sbjct: 83  MHLLVGRYLEAG---------AAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLL 133

Query: 153 KQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRA 212
            +            V  +A  AI+ L  E      +    DG   L+  ++    K++  
Sbjct: 134 DRDAC-------DTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVK 186

Query: 213 AAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKE 272
           +A  L+ L   + E+K  +     +  LV ++R+E +  H   +G + +LV   P   +E
Sbjct: 187 SAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRE 246

Query: 273 VI-----LAGALQPVIGLLSSS--CSESKREAALLLGQFAAADSNS 311
                  L   L+    LL       E       LL    ++ ++ 
Sbjct: 247 CREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCFSSPADD 292

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score =  112 bits (280), Expect = 2e-27
 Identities = 46/248 (18%), Positives = 98/248 (39%), Gaps = 7/248 (2%)

Query: 165 SGVIRRAADAITNLAHENANIKTRVRVEDGIPP--LVELLKFVDVKVQRAAAGALRTLAF 222
           SG++ R +  +     E   +K+ +RV     P    E  +  D + +  A   L  L  
Sbjct: 11  SGLVPRGS-HMRGQRGEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLC- 68

Query: 223 KNDENKKLIVECNALPTLV-LMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQP 281
           +N +N     + + +  LV   L +  A + + A  +IG    +  +I+++V+  GAL+ 
Sbjct: 69  ENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRK 128

Query: 282 VIGLLSSSCSES-KREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSA 340
           ++ LL     ++ + +A   +           +  ++      L+  +Q    +LK  SA
Sbjct: 129 LLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSA 188

Query: 341 FALGRLA-QDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADLVR 399
           F L  L      ++  +   G +  L+ L+ +++     +   AL  L  +        R
Sbjct: 189 FLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECR 248

Query: 400 VGGVQKLQ 407
              +   +
Sbjct: 249 EPELGLEE 256

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 79.7 bits (196), Expect = 2e-16
 Identities = 41/236 (17%), Positives = 83/236 (35%), Gaps = 38/236 (16%)

Query: 274 ILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLI-EMLQSPD 332
           +L+  + P  G    +  + +RE AL L      + ++     Q   +  L+   L++  
Sbjct: 36  VLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGA 95

Query: 333 SQLKEMSAFALGRLAQDTH-NQAGIAQDGGILPLLKLLDS-KNGSLQHNAAFALYGLA-D 389
           + L+  +A  +G  +Q+    Q  +   G +  LL+LLD     +++  A FA+  L  +
Sbjct: 96  AGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVRE 155

Query: 390 NEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRA 449
            E  +   +R+ G   L                                    ++   + 
Sbjct: 156 QEAGLLQFLRLDGFSVLMR---------------------------------AMQQQVQK 182

Query: 450 VKRRVTLALAHLCAPD-DCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLAT 504
           +K +    L +L     + K        ++ L+ L+ +      E    AL  L T
Sbjct: 183 LKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVT 238

>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Length = 256

 Score =  122 bits (309), Expect = 1e-31
 Identities = 31/148 (20%), Positives = 64/148 (43%), Gaps = 2/148 (1%)

Query: 532 NPTLSDVTFVVEGKQFYAHRICLLASSDAFRAMF--DGGYKEKNAKDVEIPNIRWNVFEL 589
                D   V++G++    +  L A+S   R     +    + +   +E+  I   V   
Sbjct: 28  ESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMRE 87

Query: 590 MMRFIYTGNVDVSVDIAQDLLRAADQYLLEGLKRLCEYSIAQIISVENIMLMYELSEAYN 649
           ++ +I++G + ++ D  QD+++AAD  LL  LK LC   +   I+ EN + + + +  Y 
Sbjct: 88  ILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKTLCCEFLEGCIAAENCIGIRDFALHYC 147

Query: 650 ATTLKQSCILFILEKFDKMRNKPWFFRL 677
              +      ++   F  + +   F  L
Sbjct: 148 LHHVHYLATEYLETHFRDVSSTEEFLEL 175

>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} Length = 279

 Score =  115 bits (290), Expect = 8e-29
 Identities = 38/152 (25%), Positives = 69/152 (45%), Gaps = 9/152 (5%)

Query: 535 LSDVTFV---VEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEI------PNIRWN 585
             D+T       G++F AHR  L A+++ F  +  G + E  +  VE+      P    +
Sbjct: 32  FCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPEPD 91

Query: 586 VFELMMRFIYTGNVDVSVDIAQDLLRAADQYLLEGLKRLCEYSIAQIISVENIMLMYELS 645
             E ++ ++YTG + VS     ++L  AD++LL  LK  C   + + + + N + ++ L+
Sbjct: 92  TVEAVIEYMYTGRIRVSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLHLSNCVAIHSLA 151

Query: 646 EAYNATTLKQSCILFILEKFDKMRNKPWFFRL 677
             Y  + L       I   F K+     F+ L
Sbjct: 152 HMYTLSQLALKAADMIRRNFHKVIQDEEFYTL 183

>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Length = 120

 Score =  100 bits (251), Expect = 3e-25
 Identities = 28/91 (30%), Positives = 40/91 (43%)

Query: 535 LSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFI 594
           L DV  +VEG++F  HR  L A S  F+ +F  G         EI  +       +M F 
Sbjct: 25  LCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDFVSAEALTALMDFA 84

Query: 595 YTGNVDVSVDIAQDLLRAADQYLLEGLKRLC 625
           YT  + VS     D+L AA    +  +  +C
Sbjct: 85  YTATLTVSTANVGDILSAARLLEIPAVSHVC 115

>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Length = 144

 Score = 98.9 bits (247), Expect = 2e-24
 Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 2/97 (2%)

Query: 531 NNPTLSDVTFVVEGKQFYAHRICLLASSDAFRAMF--DGGYKEKNAKDVEIPNIRWNVFE 588
                 D   V++G++    +  L A+S   R     +    + +   +E+  I   V  
Sbjct: 43  EESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMR 102

Query: 589 LMMRFIYTGNVDVSVDIAQDLLRAADQYLLEGLKRLC 625
            ++ +I++G + ++ D  QD+++AAD  LL  LK LC
Sbjct: 103 EILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKTLC 139

>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Length = 127

 Score = 97.3 bits (243), Expect = 3e-24
 Identities = 24/91 (26%), Positives = 42/91 (46%)

Query: 535 LSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFI 594
           L+DV  VV  +QF AH+  L+A S  F ++F    K   +     P I    F +++ F+
Sbjct: 29  LTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPEINPEGFNILLDFM 88

Query: 595 YTGNVDVSVDIAQDLLRAADQYLLEGLKRLC 625
           YT  +++       ++  A    +E +   C
Sbjct: 89  YTSRLNLREGNIMAVMATAMYLQMEHVVDTC 119

>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Length = 124

 Score = 93.1 bits (232), Expect = 1e-22
 Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 1/91 (1%)

Query: 535 LSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFI 594
           L DVT  VEG++F AHR  L A S  F +    G  +          +    FE +++F 
Sbjct: 29  LCDVTIFVEGQRFRAHRSVLAACSSYFHSRI-VGQADGELNITLPEEVTVKGFEPLIQFA 87

Query: 595 YTGNVDVSVDIAQDLLRAADQYLLEGLKRLC 625
           YT  + +S +   ++ +  +   +  ++  C
Sbjct: 88  YTAKLILSKENVDEVCKCVEFLSVHNIEESC 118

>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} PDB: 3ohv_A Length = 125

 Score = 92.7 bits (231), Expect = 1e-22
 Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 1/91 (1%)

Query: 535 LSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFI 594
           L DVT +VE K+F AHR  L A S+ F     G  K           +    F  +++F 
Sbjct: 32  LCDVTLIVERKEFRAHRAVLAACSEYFWQALVGQTKNDLVV-SLPEEVTARGFGPLLQFA 90

Query: 595 YTGNVDVSVDIAQDLLRAADQYLLEGLKRLC 625
           YT  + +S +  ++++R A+   +  L+  C
Sbjct: 91  YTAKLLLSRENIREVIRCAEFLRMHNLEDSC 121

>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Length = 138

 Score = 92.3 bits (230), Expect = 3e-22
 Identities = 25/104 (24%), Positives = 47/104 (45%), Gaps = 2/104 (1%)

Query: 535 LSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFI 594
           L DVT +VEG++F AHR  L A S  F +    G  +          +    FE +++F 
Sbjct: 36  LCDVTVLVEGQRFRAHRSVLAACSSYFHSRI-VGQTDAELTVTLPEEVTVKGFEPLIQFA 94

Query: 595 YTGNVDVSVDIAQDLLRAADQYLLEGLKRLC-EYSIAQIISVEN 637
           YT  + +S D   ++ R  +   +  ++  C ++   + +   +
Sbjct: 95  YTAKLILSKDNVDEVCRCVEFLSVHNIEESCFQFLKFKFLDSTS 138

>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Length = 116

 Score = 91.1 bits (227), Expect = 4e-22
 Identities = 25/92 (27%), Positives = 49/92 (53%), Gaps = 2/92 (2%)

Query: 535 LSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFI 594
           L D T V+   QF AHR  L + S+ F A++      +N   ++   ++ + F+ ++ FI
Sbjct: 22  LCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRST--SENNVFLDQSQVKADGFQKLLEFI 79

Query: 595 YTGNVDVSVDIAQDLLRAADQYLLEGLKRLCE 626
           YTG +++     +++ +AAD   +E +   C+
Sbjct: 80  YTGTLNLDSWNVKEIHQAADYLKVEEVVTKCK 111

>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Length = 119

 Score = 91.1 bits (227), Expect = 4e-22
 Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 4/92 (4%)

Query: 535 LSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFI 594
             D T  V G  F AH   L   S  F++++  G        V +P     +F L++ F 
Sbjct: 24  YCDATLDVGGLVFKAHWSVLACCSHFFQSLYGDGSGGS----VVLPAGFAEIFGLLLDFF 79

Query: 595 YTGNVDVSVDIAQDLLRAADQYLLEGLKRLCE 626
           YTG++ ++      +L AA +  +     LC+
Sbjct: 80  YTGHLALTSGNRDQVLLAARELRVPEAVELCQ 111

>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Length = 135

 Score = 91.2 bits (227), Expect = 6e-22
 Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 4/92 (4%)

Query: 535 LSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFI 594
             D T  V G  F AH   L   S  F+ ++  G        V +P     +F L++ F 
Sbjct: 25  YCDATLDVGGLVFKAHWSVLACCSHFFQRIYGDGTGGS----VVLPAGFAEIFGLLLDFF 80

Query: 595 YTGNVDVSVDIAQDLLRAADQYLLEGLKRLCE 626
           YTG++ ++      +L AA +  +     LC+
Sbjct: 81  YTGHLALTSGNRDQVLLAAKELRVPEAVELCQ 112

>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Length = 121

 Score = 89.6 bits (223), Expect = 2e-21
 Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 5/91 (5%)

Query: 535 LSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFI 594
           L DV  +V+ ++F+AHR  L  +S  F  +F    +        +  +    F+ ++ + 
Sbjct: 28  LCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRNSQH-----YTLDFLSPKTFQQILEYA 82

Query: 595 YTGNVDVSVDIAQDLLRAADQYLLEGLKRLC 625
           YT  +    +   DLL AA+   +E L+  C
Sbjct: 83  YTATLQAKAEDLDDLLYAAEILEIEYLEEQC 113

>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Length = 129

 Score = 85.0 bits (211), Expect = 7e-20
 Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 5/92 (5%)

Query: 535 LSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPN-IRWNVFELMMRF 593
             DV+ VV+G  F AHR  L ASS  FR +F+          VE+P  ++   F+ ++ F
Sbjct: 33  YCDVSVVVKGHAFKAHRAVLAASSSYFRDLFNNSRSAV----VELPAAVQPQSFQQILSF 88

Query: 594 IYTGNVDVSVDIAQDLLRAADQYLLEGLKRLC 625
            YTG + ++V     L+  A    ++ +    
Sbjct: 89  CYTGRLSMNVGDQDLLMYTAGFLQIQEIMEKG 120

>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Length = 119

 Score = 84.6 bits (210), Expect = 9e-20
 Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 5/92 (5%)

Query: 535 LSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFI 594
           L D TFVV+G  F AH+  L A S+ F+ +F           V +          ++ F+
Sbjct: 27  LCDCTFVVDGVHFKAHKAVLAACSEYFKMLF-----VDQKDVVHLDISNAAGLGQVLEFM 81

Query: 595 YTGNVDVSVDIAQDLLRAADQYLLEGLKRLCE 626
           YT  + +S +   D+L  A    ++ +   C 
Sbjct: 82  YTAKLSLSPENVDDVLAVATFLQMQDIITACH 113

>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} Length = 119

 Score = 83.1 bits (206), Expect = 3e-19
 Identities = 26/122 (21%), Positives = 43/122 (35%), Gaps = 12/122 (9%)

Query: 506 ATSLSPMDAAPPSPTQQVYLGEQFV-NNPTLSDVTFVVEGKQFYAHRICLLASSDAFRAM 564
           + SL P+    PSP     L +      P L D    V  ++F AH + L   S      
Sbjct: 2   SMSLPPIRL--PSPYGSDRLVQLAARLRPALCDTLITVGSQEFPAHSLVLAGVSQQLGRR 59

Query: 565 FDGGYKEKNAKDVEIPNIRWNVFELMMRFIYTGNVDVSVDIAQDLLRAADQYLLEGLKRL 624
                            I  + F  ++ F+Y  +V++     + L  AA    ++ L+  
Sbjct: 60  GQW---------ALGEGISPSTFAQLLNFVYGESVELQPGELRPLQEAARALGVQSLEEA 110

Query: 625 CE 626
           C 
Sbjct: 111 CW 112

>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Length = 116

 Score = 79.6 bits (197), Expect = 4e-18
 Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 6/81 (7%)

Query: 535 LSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFI 594
             DVT +VE ++F AH+  L ASS  F  +F    +      VE+  IR  +F  ++ +I
Sbjct: 31  FCDVTVIVEDRKFRAHKNILSASSTYFHQLFSVAGQV-----VELSFIRAEIFAEILNYI 85

Query: 595 YTGN-VDVSVDIAQDLLRAAD 614
           Y+   V V  D+  +L+++  
Sbjct: 86  YSSKIVRVRSDLLDELIKSGQ 106

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 75.6 bits (186), Expect = 4e-15
 Identities = 42/343 (12%), Positives = 91/343 (26%), Gaps = 71/343 (20%)

Query: 117 EVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAIT 176
             +++ +   GL     +             L  LL       +  +L      +A  + 
Sbjct: 5   YQKRKASKEYGLYNQCKK--------LNDDELFRLLD------DHNSL--KRISSARVLQ 48

Query: 177 NLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNA 236
               ++A           +   +E     +   +   A  L  +         +      
Sbjct: 49  LRGGQDA-----------VRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFN---- 93

Query: 237 LPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKRE 296
                + L  + A V   A+         +P    +      ++          +  +R 
Sbjct: 94  -ILNNMALNDKSACVRATAIESTAQRCKKNPIYSPK-----IVEQSQITAFDKSTNVRRA 147

Query: 297 AALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGI 356
            A  +                   +  LI +L+ P+  ++  +AFA+     D       
Sbjct: 148 TAFAISVINDKA-----------TIPLLINLLKDPNGDVRNWAAFAININKYDN------ 190

Query: 357 AQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPT 416
                    +++L  KN  ++  A   L    D +  ++ L        L+         
Sbjct: 191 --SDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD-KRVLSVLCDE-----LKKNT-----V 237

Query: 417 KDCVARTLKRLEEKVHGRVLNHLLYLLR-VADRAVKRRVTLAL 458
            D +      L +K    +L  L  +L    D  +       L
Sbjct: 238 YDDIIEAAGELGDK---TLLPVLDTMLYKFDDNEIITSAIDKL 277

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 60.6 bits (147), Expect = 3e-10
 Identities = 33/233 (14%), Positives = 73/233 (31%), Gaps = 33/233 (14%)

Query: 276 AGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQL 335
                 +  LL    S  +  +A +L      D           AVR  IE     +   
Sbjct: 22  KLNDDELFRLLDDHNSLKRISSARVLQLRGGQD-----------AVRLAIEFCSDKNYIR 70

Query: 336 KEMSAFALGRLAQDTHNQAGIAQDGGILPLLK--LLDSKNGSLQHNAAFALYGLADNEDN 393
           +++ AF LG++            +  +  +L    L+ K+  ++  A  +          
Sbjct: 71  RDIGAFILGQIKICK------KCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPI 124

Query: 394 VADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRR 453
            +  +         D    V+      A  +  + +K     +  L+ LL+  +  V+  
Sbjct: 125 YSPKIVEQSQITAFDKSTNVRRA---TAFAISVINDK---ATIPLLINLLKDPNGDVRNW 178

Query: 454 VTLALAHLCAPDDCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLATKA 506
              A+      +         +  +  + +L+  + + R E+ + L     K 
Sbjct: 179 AAFAININKYDNS--------DIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKR 223

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 53.6 bits (129), Expect = 5e-08
 Identities = 28/209 (13%), Positives = 60/209 (28%), Gaps = 35/209 (16%)

Query: 294 KREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQ 353
           KR+A+   G +                   L  +L   +S  +  SA  L          
Sbjct: 7   KRKASKEYGLYNQCKK---------LNDDELFRLLDDHNSLKRISSARVLQL-------- 49

Query: 354 AGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTV 413
                   +   ++    KN   +   AF L  +   +    ++  +     L D    V
Sbjct: 50  --RGGQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALNDKSACV 107

Query: 414 QPTKDCVARTLKRL---EEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPDDCKTI 470
           + T      +  +          +++             V+R    A++ +         
Sbjct: 108 RAT---AIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKA----- 159

Query: 471 FIDNNGLELLLGLLESTSVKQREESSVAL 499
                 + LL+ LL+  +   R  ++ A+
Sbjct: 160 -----TIPLLINLLKDPNGDVRNWAAFAI 183

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 52.5 bits (126), Expect = 2e-07
 Identities = 40/283 (14%), Positives = 75/283 (26%), Gaps = 82/283 (28%)

Query: 90  DNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALPHLV 149
              AV   +E                +      AF LG + +  +      +      L 
Sbjct: 52  GQDAVRLAIEFCSDK----------NYIRRDIGAFILGQIKICKK-----CEDNVFNILN 96

Query: 150 SLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTR---------------VRV--- 191
           ++    K+       + V   A ++      +N     +               VR    
Sbjct: 97  NMALNDKS-------ACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATA 149

Query: 192 --------EDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLM 243
                   +  IP L+ LLK  +  V+  AA A+    + N +              V M
Sbjct: 150 FAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYDNSD---------IRDCFVEM 200

Query: 244 LRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQ 303
           L+ ++  V  EA+  +                   L  +   L    +    +     G+
Sbjct: 201 LQDKNEEVRIEAIIGLSYRKDKR-----------VLSVLCDELKK--NTVYDDIIEAAGE 247

Query: 304 FAAADSNSKVHIVQRGAVRPLIEMLQ-SPDSQLKEMSAFALGR 345
                            +  L  ML    D+++   +   L R
Sbjct: 248 LGDKT-----------LLPVLDTMLYKFDDNEIITSAIDKLKR 279

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 72.8 bits (179), Expect = 1e-14
 Identities = 51/269 (18%), Positives = 94/269 (34%), Gaps = 73/269 (27%)

Query: 87  LIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALP 146
           L  D   V   +++LQ             + V +  A+ALG +           D  A+ 
Sbjct: 14  LRADPEKVEMYIKNLQDD----------SYYVRRAAAYALGKIG----------DERAVE 53

Query: 147 HLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVD 206
            L+  LK           + V R AADA+  +  E A           + PL++ LK  D
Sbjct: 54  PLIKALKDED--------AWVRRAAADALGQIGDERA-----------VEPLIKALKDED 94

Query: 207 VKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSS 266
             V+++AA AL  +  +            A+  L+  L+ ED  V   A   +G +    
Sbjct: 95  GWVRQSAAVALGQIGDE-----------RAVEPLIKALKDEDWFVRIAAAFALGEIGDER 143

Query: 267 PSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIE 326
                      A++P+I  L       ++ AA  LG+                    + +
Sbjct: 144 -----------AVEPLIKALKDEDGWVRQSAADALGEIGGER-----------VRAAMEK 181

Query: 327 MLQSPDSQLKEMSAFALGRL-AQDTHNQA 354
           + ++     ++++   L    + + H+  
Sbjct: 182 LAETGTGFARKVAVNYLETHKSFNHHHHH 210

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 72.4 bits (178), Expect = 1e-14
 Identities = 54/248 (21%), Positives = 88/248 (35%), Gaps = 62/248 (25%)

Query: 137 QIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIP 196
            +  D   +   +  L+      +      V R AA A+  +  E A           + 
Sbjct: 13  PLRADPEKVEMYIKNLQ------DDSYY--VRRAAAYALGKIGDERA-----------VE 53

Query: 197 PLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAV 256
           PL++ LK  D  V+RAAA AL  +  +            A+  L+  L+ ED  V   A 
Sbjct: 54  PLIKALKDEDAWVRRAAADALGQIGDE-----------RAVEPLIKALKDEDGWVRQSAA 102

Query: 257 GVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIV 316
             +G +               A++P+I  L       +  AA  LG+             
Sbjct: 103 VALGQIGDER-----------AVEPLIKALKDEDWFVRIAAAFALGEIGDER-------- 143

Query: 317 QRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSL 376
              AV PLI+ L+  D  +++ +A ALG           I  +     + KL ++  G  
Sbjct: 144 ---AVEPLIKALKDEDGWVRQSAADALGE----------IGGERVRAAMEKLAETGTGFA 190

Query: 377 QHNAAFAL 384
           +  A   L
Sbjct: 191 RKVAVNYL 198

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 55.4 bits (134), Expect = 9e-09
 Identities = 39/187 (20%), Positives = 77/187 (41%), Gaps = 32/187 (17%)

Query: 320 AVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHN 379
            V   I+ LQ     ++  +A+ALG+          I  +  + PL+K L  ++  ++  
Sbjct: 20  KVEMYIKNLQDDSYYVRRAAAYALGK----------IGDERAVEPLIKALKDEDAWVRRA 69

Query: 380 AAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHL 439
           AA AL G   +E  V  L++      L+D +  V+ +    A  L ++ ++   R +  L
Sbjct: 70  AADAL-GQIGDERAVEPLIKA-----LKDEDGWVRQS---AAVALGQIGDE---RAVEPL 117

Query: 440 LYLLRVADRAVKRRVTLALAHLCAPDDCKTIFIDNNGLELLLGLLESTSVKQREESSVAL 499
           +  L+  D  V+     AL  +               +E L+  L+      R+ ++ AL
Sbjct: 118 IKALKDEDWFVRIAAAFALGEIGDER----------AVEPLIKALKDEDGWVRQSAADAL 167

Query: 500 YKLATKA 506
            ++  + 
Sbjct: 168 GEIGGER 174

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 72.0 bits (176), Expect = 4e-14
 Identities = 43/236 (18%), Positives = 88/236 (37%), Gaps = 22/236 (9%)

Query: 192 EDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASV 251
           E  +  L+ELL      V + A   +  +A   ++  + +++        L+ +SE   +
Sbjct: 31  ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLK----KLFSLLKKSEAIPL 86

Query: 252 HFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNS 311
             E     G +    P + K +I       +         ++K   +  L + A A+   
Sbjct: 87  TQEIAKAFGQMAKEKPELVKSMI-----PVLFANYRIGDEKTKINVSYALEEIAKANPML 141

Query: 312 KVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDS 371
              I     VR  + ML S + + K  +   +  + +++              ++ LL  
Sbjct: 142 MASI-----VRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVNPFLPR----IINLLHD 192

Query: 372 KNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRL 427
            +  ++ +A  AL  LA   D +  +V +  +++L D    V  T   V   + RL
Sbjct: 193 GDEIVRASAVEALVHLATLNDKLRKVV-IKRLEELNDTSSLVNKT---VKEGISRL 244

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 70.8 bits (174), Expect = 4e-14
 Identities = 54/246 (21%), Positives = 86/246 (34%), Gaps = 62/246 (25%)

Query: 139 IVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPL 198
             D   +   +  L+             V R AA A+  +  E A           + PL
Sbjct: 10  HTDPEKVEMYIKNLQD--------DSYYVRRAAAYALGKIGDERA-----------VEPL 50

Query: 199 VELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGV 258
           ++ LK  D  V+RAAA AL  +  +            A+  L+  L+ ED  V   A   
Sbjct: 51  IKALKDEDAWVRRAAADALGQIGDE-----------RAVEPLIKALKDEDGWVRQSAAVA 99

Query: 259 IGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQR 318
           +G +               A++P+I  L       +  AA  LG+               
Sbjct: 100 LGQIGDER-----------AVEPLIKALKDEDWFVRIAAAFALGEIGDER---------- 138

Query: 319 GAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQH 378
            AV PLI+ L+  D  +++ +A ALG           I  +     + KL ++  G  + 
Sbjct: 139 -AVEPLIKALKDEDGWVRQSAADALGE----------IGGERVRAAMEKLAETGTGFARK 187

Query: 379 NAAFAL 384
            A   L
Sbjct: 188 VAVNYL 193

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 57.7 bits (140), Expect = 1e-09
 Identities = 46/242 (19%), Positives = 79/242 (32%), Gaps = 70/242 (28%)

Query: 88  IVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALPH 147
             D   V   +++LQ             + V +  A+ALG +           D  A+  
Sbjct: 10  HTDPEKVEMYIKNLQDD----------SYYVRRAAAYALGKIG----------DERAVEP 49

Query: 148 LVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDV 207
           L+  LK           + V R AADA+  +  E A           + PL++ LK  D 
Sbjct: 50  LIKALKDED--------AWVRRAAADALGQIGDERA-----------VEPLIKALKDEDG 90

Query: 208 KVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGN------ 261
            V+++AA AL  +  +            A+  L+  L+ ED  V   A   +G       
Sbjct: 91  WVRQSAAVALGQIGDER-----------AVEPLIKALKDEDWFVRIAAAFALGEIGDERA 139

Query: 262 -------LVHSSPSIKKEVILA-------GALQPVIGLLSSSCSESKREAALLLGQFAAA 307
                  L      +++    A            +  L  +    +++ A   L    + 
Sbjct: 140 VEPLIKALKDEDGWVRQSAADALGEIGGERVRAAMEKLAETGTGFARKVAVNYLETHKSL 199

Query: 308 DS 309
            S
Sbjct: 200 IS 201

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 54.2 bits (131), Expect = 2e-08
 Identities = 39/187 (20%), Positives = 77/187 (41%), Gaps = 32/187 (17%)

Query: 320 AVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHN 379
            V   I+ LQ     ++  +A+ALG+          I  +  + PL+K L  ++  ++  
Sbjct: 15  KVEMYIKNLQDDSYYVRRAAAYALGK----------IGDERAVEPLIKALKDEDAWVRRA 64

Query: 380 AAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHL 439
           AA AL G   +E  V  L++      L+D +  V+ +    A  L ++ ++   R +  L
Sbjct: 65  AADAL-GQIGDERAVEPLIKA-----LKDEDGWVRQS---AAVALGQIGDE---RAVEPL 112

Query: 440 LYLLRVADRAVKRRVTLALAHLCAPDDCKTIFIDNNGLELLLGLLESTSVKQREESSVAL 499
           +  L+  D  V+     AL  +               +E L+  L+      R+ ++ AL
Sbjct: 113 IKALKDEDWFVRIAAAFALGEIGDER----------AVEPLIKALKDEDGWVRQSAADAL 162

Query: 500 YKLATKA 506
            ++  + 
Sbjct: 163 GEIGGER 169

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 63.3 bits (153), Expect = 2e-10
 Identities = 42/297 (14%), Positives = 92/297 (30%), Gaps = 49/297 (16%)

Query: 6   RQTSPARRSLKRKLEQDFEEKPDRKVSIVESGATQQDLVQDIRAQIDILNSKFSSDETDR 65
              SP  +    ++  +     +    + + GA        ++  ++ L +K    +   
Sbjct: 467 HNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGA--------VKIILEYLANK---QDIGE 515

Query: 66  AAAKTASHALVEFAK-----NEEIV-SLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVE 119
                   AL    +     N  ++        A+P L E L     + +  +  + +++
Sbjct: 516 PIRILGCRAL---TRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIK 572

Query: 120 K----ECAFALGLLAVKPEHQ------QIIVDTGALPHLVSLLKQYKNGGNSRALSGVIR 169
                E   AL  LA             I+        + +L+       N       ++
Sbjct: 573 LTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLML----DENVP-----LQ 623

Query: 170 RAA-DAITNLAHENANIKTRV------RVEDGIPPLVELLKFVDVKVQRAAAGALRTLAF 222
           R+  + I+N+      I  +       +       LV+LL+  DV+ QRA A     +A 
Sbjct: 624 RSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIAT 683

Query: 223 KNDENKKLIVECNALPTLVLML---RSEDASVHFEAVGVIGNLVHSSPSIKKEVILA 276
                 K ++    L    + +   + +D  +    + +   L    P      +  
Sbjct: 684 TIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIPDNGTNEVYP 740

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 53.6 bits (128), Expect = 2e-07
 Identities = 38/262 (14%), Positives = 82/262 (31%), Gaps = 44/262 (16%)

Query: 270 KKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQ 329
           +K ++    +  +   + +     K++   ++        N    + Q+GAV+ ++E L 
Sbjct: 450 EKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITR-SKNFIPQLAQQGAVKIILEYLA 508

Query: 330 SPDS---QLKEMSAFALGRLAQDT---HNQAGIAQDGGILPLLKLLDSKNGSLQHN---- 379
           +       ++ +   AL R+   T         +    I  L +LL        +     
Sbjct: 509 NKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHND 568

Query: 380 ----------AAFALYGLADNEDNVAD------LVRVGGVQKLQDGEFT----VQ----- 414
                     A  AL  LA +E +  +      +        +++        +Q     
Sbjct: 569 EQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLE 628

Query: 415 ------PTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPDD-- 466
                      +A     LE     R  N L+ LL+++D   +R V    A++       
Sbjct: 629 LISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLI 688

Query: 467 CKTIFIDNNGLELLLGLLESTS 488
            K +      +E  + +     
Sbjct: 689 AKELLTKKELIENAIQVFADQI 710

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 49.4 bits (117), Expect = 4e-06
 Identities = 30/245 (12%), Positives = 77/245 (31%), Gaps = 15/245 (6%)

Query: 146 PHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIK-TRVRVEDGIPPLVELLKF 204
            + + LL++  N  + +  S ++         L    +  K T + ++      +  +  
Sbjct: 295 ENYLQLLERSLNVEDVQIYSALV---------LVKTWSFTKLTCINLKQLSEIFINAISR 345

Query: 205 VDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDAS-VHFEAVGVIGNLV 263
             V     +  AL  L+ K      +    +    L+ M++S+  +   +  + ++ NL 
Sbjct: 346 RIVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLS 405

Query: 264 HSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRP 323
                  +                     + +  A    +      N K  I++   +  
Sbjct: 406 TLPE---EXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKY-ILRTELISF 461

Query: 324 LIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFA 383
           L   + +     K+     +  + +  +    +AQ G +  +L+ L +K    +      
Sbjct: 462 LKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILG 521

Query: 384 LYGLA 388
              L 
Sbjct: 522 CRALT 526

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 57.3 bits (139), Expect = 3e-10
 Identities = 27/153 (17%), Positives = 50/153 (32%), Gaps = 34/153 (22%)

Query: 192 EDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASV 251
             G+ P    +   +  V+R  + AL  +    DE         A   L+  L +ED  +
Sbjct: 11  SSGLVPRGSHMADENKWVRRDVSTALSRM---GDE---------AFEPLLESLSNEDWRI 58

Query: 252 HFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNS 311
              A  +IGN                A++P+I LL       +  AA  L Q        
Sbjct: 59  RGAAAWIIGNFQDER-----------AVEPLIKLLEDDSGFVRSGAARSLEQIGGER--- 104

Query: 312 KVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALG 344
                       + ++ ++     ++++   L 
Sbjct: 105 --------VRAAMEKLAETGTGFARKVAVNYLE 129

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 50.8 bits (122), Expect = 7e-08
 Identities = 25/139 (17%), Positives = 54/139 (38%), Gaps = 23/139 (16%)

Query: 320 AVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHN 379
            + P    +   +  ++   + AL R+            D    PLL+ L +++  ++  
Sbjct: 13  GLVPRGSHMADENKWVRRDVSTALSRMG-----------DEAFEPLLESLSNEDWRIRGA 61

Query: 380 AAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHL 439
           AA+ + G   +E  V  L+++     L+D    V+      AR+L+++  +   RV   +
Sbjct: 62  AAWII-GNFQDERAVEPLIKL-----LEDDSGFVRSG---AARSLEQIGGE---RVRAAM 109

Query: 440 LYLLRVADRAVKRRVTLAL 458
             L        ++     L
Sbjct: 110 EKLAETGTGFARKVAVNYL 128

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 43.1 bits (102), Expect = 4e-05
 Identities = 24/168 (14%), Positives = 43/168 (25%), Gaps = 51/168 (30%)

Query: 93  AVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLL 152
            +     H+                V ++ + AL  +              A   L+  L
Sbjct: 13  GLVPRGSHMADE----------NKWVRRDVSTALSRM-----------GDEAFEPLLESL 51

Query: 153 KQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRA 212
                         +   AA  I N   E A           + PL++LL+     V+  
Sbjct: 52  SNED--------WRIRGAAAWIIGNFQDERA-----------VEPLIKLLEDDSGFVRSG 92

Query: 213 AAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIG 260
           AA +L  +     E             +  +  +        AV  + 
Sbjct: 93  AARSLEQIG---GE--------RVRAAMEKLAETGTGFARKVAVNYLE 129

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.9 bits (139), Expect = 8e-09
 Identities = 80/545 (14%), Positives = 157/545 (28%), Gaps = 179/545 (32%)

Query: 17  RKLEQDFEEKPDRKVSIVESGATQQDL-VQDIRAQIDILNSKFSSDETDR----AAAKTA 71
           + +   FE+        V+      +   +D++   D+  S  S +E D       A + 
Sbjct: 19  KDILSVFEDA------FVD------NFDCKDVQ---DMPKSILSKEEIDHIIMSKDAVSG 63

Query: 72  SHALVEF--AKNEEIVSLIVDNGAVPA---LVEHLQTPP-QLTNAQIPYEHEVEK----- 120
           +  L     +K EE+V   V+         L+  ++T   Q +     Y  + ++     
Sbjct: 64  TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN 123

Query: 121 -----------ECAFAL--GLLAVKPEHQQIIVD--TGA----LPHLV----SLLKQYKN 157
                      +    L   LL ++P  + +++D   G+    +   V     +  +   
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLELRP-AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF 182

Query: 158 G------GNSRALSGVIRRAADAITNLAHE-NANIKTRVRVEDGIPPLVELLKFVDVKVQ 210
                   N  +   V+    + +  L ++ + N  +R      I   +  ++       
Sbjct: 183 KIFWLNLKNCNSPETVL----EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ------- 231

Query: 211 RAAAGALRTLAFKNDENKKLIV---------------ECNALPTLVLMLRSEDASVHFEA 255
                 LR L         L+V                C     L+    +    V  + 
Sbjct: 232 ----AELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC---KILLT---TRFKQV-TDF 280

Query: 256 VGVIG----NLVHSSPSI-KKEV--ILAGALQPVIGLLSSSCSESKREAA----LLLGQF 304
           +        +L H S ++   EV  +L          L     +  RE        L   
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKY-------LDCRPQDLPREVLTTNPRRLSII 333

Query: 305 AAADSNSKVHI-----VQRGAVRPLIEM---LQSPDSQLKEMSAFALGRLAQDTHNQAGI 356
           A +  +          V    +  +IE    +  P    K     ++       H     
Sbjct: 334 AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV--FPPSAH----- 386

Query: 357 AQDGGILP--LLKLL--DSKNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFT 412
                 +P  LL L+  D                 +D    V  L +   V+K Q  E T
Sbjct: 387 ------IPTILLSLIWFDVIK--------------SDVMVVVNKLHKYSLVEK-QPKEST 425

Query: 413 VQPTKDCVARTLKRLEEK--VHGRVLNHLLY-LLRVADRAVKRRVTLALAHLCAPDDCKT 469
           +            +LE +  +H  +++H  Y + +  D                 DD   
Sbjct: 426 IS-IPSIYLELKVKLENEYALHRSIVDH--YNIPKTFD----------------SDDLIP 466

Query: 470 IFIDN 474
            ++D 
Sbjct: 467 PYLDQ 471

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 55.8 bits (134), Expect = 3e-08
 Identities = 57/416 (13%), Positives = 133/416 (31%), Gaps = 48/416 (11%)

Query: 105 PQLTNAQIPYEHEVEKECAFALGLLA--VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSR 162
               N        V +  A  LG  A  ++ ++ +  +    +P   +L         S 
Sbjct: 167 QYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEI----IPMFSNLA--------SD 214

Query: 163 ALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLA- 221
               V   A +A  N+A     +         +P L +  +    +V+   A     L  
Sbjct: 215 EQDSVRLLAVEACVNIAQ---LLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQK 271

Query: 222 -FKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQ 280
               +  K  +V     P    +++  +A V   A   +     +  +  +E ++   + 
Sbjct: 272 AVGPEITKTDLV-----PAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQIL 326

Query: 281 PVIGLLSSSCSESKREAAL-LLGQFAAA--DSNSKVHIVQRGAVRPLIEMLQSPDSQLKE 337
           P I  L S  ++  + A   ++   +      N+  H++        +  L+    +++ 
Sbjct: 327 PCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLP-----LFLAQLKDECPEVRL 381

Query: 338 MSAFALGRLAQDTHNQAGIAQDGGILPLL-KLLDSKNGSLQHNAAFALYGLAD--NEDNV 394
                L  + +    +        +LP + +L +     ++      +  LA     +  
Sbjct: 382 NIISNLDCVNEVIGIRQLSQS---LLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFF 438

Query: 395 ADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRL-----EEKVHGRVLNHLLYLLRVADRA 449
            + +    +  L D  + +   ++     LK+L     +E  H  ++  +L +    D  
Sbjct: 439 DEKLNSLCMAWLVDHVYAI---REAATSNLKKLVEKFGKEWAHATIIPKVLAMSG--DPN 493

Query: 450 VKRRVTLALAHLCAPDDCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLATK 505
              R+T         + C       + L  +L +        R   + +L K+   
Sbjct: 494 YLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPI 549

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 50.5 bits (119), Expect = 2e-06
 Identities = 65/428 (15%), Positives = 136/428 (31%), Gaps = 26/428 (6%)

Query: 83   EIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDT 142
            + ++LI  +     L   L     +  + +       K    +   + +K     +    
Sbjct: 630  KALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAM 689

Query: 143  GALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELL 202
              +  ++  L    +  +      V + A   +T LA    +  +++     +  L+ L+
Sbjct: 690  --IDAVLDELPPLISESDMH----VSQMAISFLTTLAKVYPSSLSKI-SGSILNELIGLV 742

Query: 203  K--FVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIG 260
            +   +      A     + L      N   +     L   V       A  H ++   I 
Sbjct: 743  RSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVY--SQSTALTHKQSYYSIA 800

Query: 261  NLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALL-LGQFAAADSNSKVHIVQRG 319
              V +      +   A   Q +  + +S  ++S R  ALL LG+       S    ++  
Sbjct: 801  KCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKS- 859

Query: 320  AVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHN 379
                ++E   SP  ++K  +++ALG ++        +      LP +    +     Q+ 
Sbjct: 860  ---VILEAFSSPSEEVKSAASYALGSIS--------VGNLPEYLPFVLQEITSQPKRQYL 908

Query: 380  AAFALYGLADN--EDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLN 437
               +L  +  +     +   V       L+  E   + T++ VA  L +L       +L 
Sbjct: 909  LLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPETLLP 968

Query: 438  HLLYLLRVADRAVKRRVTLALAHLCAPDDCKTIFIDNNGLELLLGLLESTSVKQREESSV 497
             L   L       +  V  A+    +        +  N +   L  LE   +  R  + V
Sbjct: 969  RLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALV 1028

Query: 498  ALYKLATK 505
                 A  
Sbjct: 1029 TFNSAAHN 1036

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Length = 651

 Score = 49.7 bits (118), Expect = 2e-06
 Identities = 64/394 (16%), Positives = 123/394 (31%), Gaps = 64/394 (16%)

Query: 29  RKVSIVESGATQQDLVQDIRAQIDILNSKFSSDETDRAAAKTASHALVEFAKNEEIVSLI 88
           R V   +S   Q    + I+   D + S  S+   DR  A  A   L   +K   +    
Sbjct: 5   RGVMGGQSAGPQHTEAETIQKLCDRVAS--STLLDDRRNAVRA---LKSLSKKYRLE--- 56

Query: 89  VDNGAVPALVEHLQTPPQ-----------LTNAQIPYEHEVEKECAFALGLLAVKPEHQQ 137
           V   A+  L+  LQT              L N     E E  +E +            + 
Sbjct: 57  VGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEI 116

Query: 138 IIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANI--KTRVRVEDGI 195
            I     +  L+SLL+++           V       +T+L  +      +  +    G+
Sbjct: 117 FIKQQENVTLLLSLLEEFD--------FHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGV 168

Query: 196 PPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEA 255
             L++LL      ++      L+ L   N   +K++   NA   L+ ++  E  S     
Sbjct: 169 SRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIV 228

Query: 256 V----GVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNS 311
           V     ++ NL+ ++ S +        +Q +                       +A   +
Sbjct: 229 VEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDEN----------SGWSAQKVT 278

Query: 312 KVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDS 371
            +H      +  L+ +L SP+                 +  Q  + Q G +  L  +L +
Sbjct: 279 NLH-----LMLQLVRVLVSPN-----------NPPGATSSCQKAMFQCGLLQQLCTILMA 322

Query: 372 KNGSLQHNAAFALYGLAD----NEDNVADLVRVG 401
                       +  +++     + N      V 
Sbjct: 323 TGVPADILTE-TINTVSEVIRGCQVNQDYFASVN 355

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 48.3 bits (114), Expect = 8e-06
 Identities = 20/117 (17%), Positives = 42/117 (35%), Gaps = 1/117 (0%)

Query: 278 ALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKE 337
            + P++  L        +E+ +L+    A      +       +  LI+ L    + ++ 
Sbjct: 359 HILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRS 418

Query: 338 MSAFALGRLAQDTHNQAGIAQDGGILP-LLKLLDSKNGSLQHNAAFALYGLADNEDN 393
           ++ + L R A    +Q        ++  LLK +   N  +Q  A  A   L +    
Sbjct: 419 ITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACT 475

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861

 Score = 41.7 bits (97), Expect = 8e-04
 Identities = 50/359 (13%), Positives = 111/359 (30%), Gaps = 43/359 (11%)

Query: 35  ESGATQQDLVQDIRAQIDILNSKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDNGAV 94
            +    Q LV      +  +     S ET +A    A +AL +      I + +   G  
Sbjct: 165 SADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSL--IFIKNNMEREGER 222

Query: 95  PALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQIIVDTGALPHLVSLLK 153
             L++ +    + T A+   + EV+      L  +        +        P++   L 
Sbjct: 223 NYLMQVV---CEATQAE---DIEVQAAAFGCLCKIMSKYYTFMK--------PYMEQALY 268

Query: 154 QYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAA 213
                        V     +  + +  E  +I   +         ++   F    ++   
Sbjct: 269 ALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELA--QFPQSPLQSYNFALSSIKDVV 326

Query: 214 AGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEV 273
              L  L  +N++ +                  +D +V   A   +     +  +     
Sbjct: 327 PNLLNLLTRQNEDPE-----------------DDDWNVSMSAGACLQLFAQNCGNH---- 365

Query: 274 ILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDS 333
           IL   L+ V   +++    ++  A +  G         +       A+  ++ ++     
Sbjct: 366 ILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSL 425

Query: 334 QLKEMSAFALGRLAQDTHNQAGIAQ--DGGILPLLKLLDSKNGSLQHNAAFALYGLADN 390
           Q+KE +A+ +GR+A          Q   G +   L  L      +  N ++ +  L + 
Sbjct: 426 QVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHP-KVATNCSWTIINLVEQ 483

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Length = 591

 Score = 41.7 bits (98), Expect = 8e-04
 Identities = 54/341 (15%), Positives = 112/341 (32%), Gaps = 41/341 (12%)

Query: 183 ANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVL 242
             I+     E    PL + LK  D  V++ AA  +  L   N +   ++ +   L +L  
Sbjct: 111 GCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ---MVEDQGFLDSLRD 167

Query: 243 MLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAAL-LL 301
           ++   +  V   AV  +  +  S P+     +    +  ++  L + C+E  +   L  L
Sbjct: 168 LIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTAL-NECTEWGQIFILDCL 226

Query: 302 GQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSA----FALGRLAQDTHNQAGIA 357
             +   D      I +R     +   L   +S +  +SA         L     +   + 
Sbjct: 227 SNYNPKDDREAQSICER-----VTPRLSHANSAVV-LSAVKVLMKFLELLPKDSDYYNML 280

Query: 358 QDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTK 417
                 PL+ LL  +   +Q+ A   +  +      +        +++     F V+   
Sbjct: 281 LKKLAPPLVTLLSGEP-EVQYVALRNINLIVQKRPEI--------LKQEIKVFF-VKYND 330

Query: 418 DCVARTLKRLE-------EKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCA--PDDCK 468
               +  K L+       +    +VL  L       D    R+   A+           +
Sbjct: 331 PIYVKLEK-LDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAE 389

Query: 469 TIFIDNNGLELLLGLLESTSVKQREESSVALYKLATKATSL 509
                   +  LL L+++      +E+ V +  +  K  + 
Sbjct: 390 RC------VSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNK 424

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	704
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	100.0
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	100.0
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	100.0
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	100.0
3nmz_A	458	APC variant protein; protein-protein complex, arma	100.0
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	100.0
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	100.0
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	100.0
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	100.0
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	100.0
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	100.0
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	100.0
3nmz_A	458	APC variant protein; protein-protein complex, arma	100.0
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	100.0
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	100.0
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	100.0
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	100.0
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	100.0
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	100.0
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	100.0
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	100.0
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	100.0
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	100.0
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.98
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.97
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.97
3hve_A	256	Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis	99.96
3htm_A	172	Speckle-type POZ protein; BTB, SPOP, ubiquitin, li	99.95
3i3n_A	279	Kelch-like protein 11; structural genomics, BTB, K	99.95
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.94
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.93
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.93
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.93
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.93
3hqi_A	312	Speckle-type POZ protein; SPOP, ubiquitin, puckere	99.92
4eoz_A	145	Speckle-type POZ protein; E3 ubiquitin ligase, nuc	99.91
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.91
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.89
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.89
2vkp_A	109	BTB/POZ domain-containing protein 6; protein-bindi	99.88
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.88
2if5_A	120	Zinc finger and BTB domain-containing protein 7A;	99.88
1r29_A	127	B-cell lymphoma 6 protein; BTB domain, transcripti	99.87
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.86
2ppi_A	144	Gigaxonin; BTB domain, protein degradation, struct	99.86
2z8h_A	138	Transcription regulator protein BACH1; BTB, POZ, d	99.86
3b84_A	119	Zinc finger and BTB domain-containing protein 48;	99.85
1buo_A	121	POZ domain, protein (promyelocytic leukemia zinc f	99.85
2yy9_A	135	Zinc finger and BTB domain-containing protein 48;	99.85
2vpk_A	116	Myoneurin; transcription regulation, transcription	99.85
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.83
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.83
2q81_A	119	MIZ-1 protein; BTB/POZ domain, transcription; HET:	99.83
3ohu_A	125	Transcription regulator protein BACH2; BTB/POZ dom	99.82
3ga1_A	129	Nucleus accumbens-associated protein 1; BTB/POZ do	99.82
2ihc_A	124	Transcription regulator protein BACH1; BRIC-A-BRAC	99.82
3m5b_A	119	Zinc finger and BTB domain-containing protein 32;	99.79
3fkc_A	116	Transcriptional regulator kaiso; zinc finger and B	99.78
3grl_A	651	General vesicular transport factor P115; vesicle t	99.72
3grl_A	651	General vesicular transport factor P115; vesicle t	99.66
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.65
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.64
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.62
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.62
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.57
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.54
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.54
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.52
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.47
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.46
2ast_A	159	S-phase kinase-associated protein 1A; SCF-substrat	99.44
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.43
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.41
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.4
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.38
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.38
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.37
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.36
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.34
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.31
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.29
4ajy_C	97	Transcription elongation factor B polypeptide 1; E	99.25
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	99.19
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.15
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.11
1fs1_B	141	SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le	99.09
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	99.07
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	98.98
2p1m_A	160	SKP1-like protein 1A; F-BOX, leucine rich repeat,	98.96
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	98.89
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	98.74
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.71
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	98.66
1hv2_A	99	Elongin C, ELC1; protein-peptide complex, signalin	98.61
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.6
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	98.59
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	98.57
2fnj_C	96	Transcription elongation factor B polypeptide 1; b	98.56
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	98.55
3v7d_A	169	Suppressor of kinetochore protein 1; WD 40 domain,	98.53
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.49
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	98.45
2eqx_A	105	Kelch repeat and BTB domain-containing protein 4;	98.42
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.39
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.34
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	98.29
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	98.27
3drz_A	107	BTB/POZ domain-containing protein KCTD5; potassium	98.26
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.24
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.21
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.19
1vcb_B	112	Protein (elongin C); tumor suppressor, cancer, ubi	98.18
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	97.97
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	97.91
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	97.84
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	97.78
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	97.67
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	97.4
2x1g_F	971	Cadmus; transport protein, developmental protein,	97.26
2x19_B	963	Importin-13; nuclear transport, protein transport;	97.01
3drx_A	202	BTB/POZ domain-containing protein KCTD5; golgi, gr	96.99
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	96.98
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	96.92
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	96.9
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	96.87
2x19_B	963	Importin-13; nuclear transport, protein transport;	96.85
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	96.84
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	96.8
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	96.77
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	96.76
2x1g_F	971	Cadmus; transport protein, developmental protein,	96.74
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	96.73
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	96.53
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	96.53
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	96.47
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	96.33
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	96.3
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	96.2
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	96.17
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	95.93
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	95.88
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	95.87
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	95.67
3kvt_A	115	Potassium channel protein SHAW; tetramerization do	95.67
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	95.35
1s1g_A	124	Potassium voltage-gated channel subfamily D membe;	95.27
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	95.02
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	94.88
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	94.68
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	94.64
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	94.58
2nz0_B	140	Potassium voltage-gated channel subfamily D membe;	94.56
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	94.25
1nn7_A	105	Potassium channel KV4.2; teteramerization domain,	94.17
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	93.88
1t1d_A	100	Protein (potassium channel KV1.1); potassium chann	93.7
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	93.51
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	92.96
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	92.63
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	91.43
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	91.13
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	89.03
3qml_C	315	Protein SLS1, nucleotide exchange factor SIL1; arm	87.64
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	86.68
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	86.44
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	85.14
3qml_C	315	Protein SLS1, nucleotide exchange factor SIL1; arm	84.68

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=100.00  E-value=1.6e-38  Score=343.76  Aligned_cols=403  Identities=20%  Similarity=0.287  Sum_probs=340.3

Q ss_pred             HHHHHHHhhhccCCchhhHHHHHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHH
Q 005282           47 IRAQIDILNSKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFAL  126 (704)
Q Consensus        47 ~~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L  126 (704)
                      +++++..+   .+.+.+.+.....+++.|.+...+|.. +.+++.|+||.|+++|+..+.         ++++..|+|+|
T Consensus        59 i~~~v~~l---~s~d~~~q~~a~~~~rklls~e~~ppi-~~ii~~G~ip~LV~lL~~~~~---------~~lq~~Aa~aL  125 (510)
T 3ul1_B           59 VEDIVKGI---NSNNLESQLQATQAARKLLSREKQPPI-DNIIRAGLIPKFVSFLGKTDC---------SPIQFESAWAL  125 (510)
T ss_dssp             HHHHHHHH---TSSCHHHHHHHHHHHHHHHTCSSCCCH-HHHHHTTHHHHHHHHTTCTTC---------HHHHHHHHHHH
T ss_pred             HHHHHHHh---cCCCHHHHHHHHHHHHHHhcCCCCchH-HHHHHCCCHHHHHHHHCCCCC---------HHHHHHHHHHH
Confidence            56666554   344444444444444444333345555 677899999999999987653         58999999999


Q ss_pred             Hhhc-CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCC
Q 005282          127 GLLA-VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFV  205 (704)
Q Consensus       127 ~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~  205 (704)
                      +||+ ++++.+..+++.|++|.|+.+|++++.        ++++.|+|+|+|++.+++..+..+...|+++.|+.++.++
T Consensus       126 ~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~--------~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~  197 (510)
T 3ul1_B          126 TNIASGTSEQTKAVVDGGAIPAFISLLASPHA--------HISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVP  197 (510)
T ss_dssp             HHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCH--------HHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSS
T ss_pred             HHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCH--------HHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhc
Confidence            9999 899999999999999999999998765        9999999999999998999999999999999999999865


Q ss_pred             C-----HHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHH
Q 005282          206 D-----VKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQ  280 (704)
Q Consensus       206 ~-----~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~  280 (704)
                      +     ..+++.+++++.+++.+...........++++.|+.++.+++++++..++++|.+++..++.....+...|+++
T Consensus       198 ~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~  277 (510)
T 3ul1_B          198 DLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVP  277 (510)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHH
T ss_pred             cchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccch
Confidence            4     45788999999999975555444455567899999999999999999999999999988888888888999999


Q ss_pred             HHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchh-hhHHhh
Q 005282          281 PVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQ-AGIAQD  359 (704)
Q Consensus       281 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~-~~~~~~  359 (704)
                      .|+.++.+++..++..++++|+|++.+++.....+.+.|+++.|+.++++++..+++.|+|+|+|++.+.... ..+.+.
T Consensus       278 ~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~  357 (510)
T 3ul1_B          278 QLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNH  357 (510)
T ss_dssp             HHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred             hhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhc
Confidence            9999999999999999999999999888888888999999999999999999999999999999999876554 456778


Q ss_pred             CChHHHHHhhcCCChhHHHHHHHHHHHccc--CCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhH
Q 005282          360 GGILPLLKLLDSKNGSLQHNAAFALYGLAD--NEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLN  437 (704)
Q Consensus       360 ~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (704)
                      |+++.|+.++.+++..++..|+++|.|++.  +++.+..+++.|+++                                 
T Consensus       358 g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~---------------------------------  404 (510)
T 3ul1_B          358 GLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIE---------------------------------  404 (510)
T ss_dssp             THHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHH---------------------------------
T ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHH---------------------------------
Confidence            999999999999999999999999999985  566777888877754                                 


Q ss_pred             HHHHHHhhccHHHHHHHHHHHHhccC-------CCccceeeecCCcHHHHHHHHhhcchhhhhhHHHHHHHHh
Q 005282          438 HLLYLLRVADRAVKRRVTLALAHLCA-------PDDCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLA  503 (704)
Q Consensus       438 ~L~~ll~~~~~~v~~~a~~~L~~l~~-------~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~  503 (704)
                      +|+.++.+.++.++..++++|.++..       .+..+..+.+.||++.|..+..+++.++...|...|...-
T Consensus       405 ~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf  477 (510)
T 3ul1_B          405 PLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF  477 (510)
T ss_dssp             HHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHC
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence            47778899999999999999999842       1223355678899999999988999999999988887654

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=100.00  E-value=1.8e-37  Score=337.84  Aligned_cols=387  Identities=20%  Similarity=0.286  Sum_probs=334.7

Q ss_pred             HHHHHHHHHHHHhhc---ChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHHHHH
Q 005282           66 AAAKTASHALVEFAK---NEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQIIVD  141 (704)
Q Consensus        66 ~~~~~a~~~L~~l~~---~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~~~  141 (704)
                      ..+..|+..+..+..   +|. .+.+++.|+||.|+++|...+.         ++++..|+|+|+|++ ++++.+..+++
T Consensus        91 ~~q~~a~~~~rklLs~~~~~~-i~~ii~~G~ip~Lv~lL~~~~~---------~~~q~~Aa~aL~nia~~~~~~~~~vv~  160 (529)
T 3tpo_A           91 ESQLQATQAARKLLSREKQPP-IDNIIRAGLIPKFVSFLGKTDC---------SPIQFESAWALTNIASGTSEQTKAVVD  160 (529)
T ss_dssp             HHHHHHHHHHHHHHTSSSCCC-HHHHHHTTHHHHHHHHHTCTTC---------HHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCCch-HHHHHHCCCHHHHHHHHcCCCC---------HHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            345566666655432   344 4677899999999999987653         589999999999999 78889999999


Q ss_pred             cCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCC-----HHHHHHHHHH
Q 005282          142 TGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVD-----VKVQRAAAGA  216 (704)
Q Consensus       142 ~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~-----~~~~~~a~~~  216 (704)
                      .|++|.|+.+|.+++.        ++++.|+|+|+|++.+++..+..+...|++++|+.++..++     ..++..++++
T Consensus       161 ~Gaip~Lv~LL~s~~~--------~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~  232 (529)
T 3tpo_A          161 GGAIPAFISLLASPHA--------HISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWT  232 (529)
T ss_dssp             TTHHHHHHHHTTCSCH--------HHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHcCCCH--------HHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHH
Confidence            9999999999998776        99999999999999989999999999999999999998654     4678899999


Q ss_pred             HHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHH
Q 005282          217 LRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKRE  296 (704)
Q Consensus       217 L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~  296 (704)
                      +.+++.+...........+++|.|+.++.+++++++..++|+|.+++..++.....+...|+++.|+.+|.+++..++..
T Consensus       233 L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~  312 (529)
T 3tpo_A          233 LSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTP  312 (529)
T ss_dssp             HHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHH
T ss_pred             HHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHH
Confidence            99999755555555555678999999999999999999999999999988888888889999999999999999999999


Q ss_pred             HHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchh-hhHHhhCChHHHHHhhcCCChh
Q 005282          297 AALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQ-AGIAQDGGILPLLKLLDSKNGS  375 (704)
Q Consensus       297 a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~~~~~L~~ll~~~~~~  375 (704)
                      ++.+|+|++.+++.....+.+.|+++.|+.++.++++.++..|+|+|+|++.+.... ..+.+.|+++.|+.++.+++..
T Consensus       313 a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~  392 (529)
T 3tpo_A          313 ALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFK  392 (529)
T ss_dssp             HHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHH
T ss_pred             HHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHH
Confidence            999999999888888888999999999999999999999999999999999876654 4567789999999999999999


Q ss_pred             HHHHHHHHHHHccc--CCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHH
Q 005282          376 LQHNAAFALYGLAD--NEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRR  453 (704)
Q Consensus       376 v~~~a~~~L~~l~~--~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~  453 (704)
                      ++..|+++|+|++.  +++....+++.|+++                                 +|+.++.+.++.++..
T Consensus       393 v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~---------------------------------~L~~LL~~~d~~i~~~  439 (529)
T 3tpo_A          393 TQKAAAWAITNYTSGGTVEQIVYLVHCGIIE---------------------------------PLMNLLSAKDTKIIQV  439 (529)
T ss_dssp             HHHHHHHHHHHHHHHSCHHHHHHHHHTTCHH---------------------------------HHHHGGGCSCHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHCcCHH---------------------------------HHHHHhcCCCHHHHHH
Confidence            99999999999985  566778888877755                                 4677889999999999


Q ss_pred             HHHHHHhccC-------CCccceeeecCCcHHHHHHHHhhcchhhhhhHHHHHHHHh
Q 005282          454 VTLALAHLCA-------PDDCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLA  503 (704)
Q Consensus       454 a~~~L~~l~~-------~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~  503 (704)
                      ++++|.++..       .+..+..+.+.||++.|..|..+++.++...|...|...-
T Consensus       440 ~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf  496 (529)
T 3tpo_A          440 ILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF  496 (529)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence            9999999832       1223345678899999999999999999999988886653

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=100.00  E-value=1.1e-36  Score=334.57  Aligned_cols=417  Identities=17%  Similarity=0.209  Sum_probs=342.1

Q ss_pred             HHHHHHHHHHhhcC-hhHHHHHH-hCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHcCCc
Q 005282           68 AKTASHALVEFAKN-EEIVSLIV-DNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGAL  145 (704)
Q Consensus        68 ~~~a~~~L~~l~~~-~~~~~~l~-~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l  145 (704)
                      ...|++++.++... ++....++ ..|+++.|+.++.+++.          .++..|++++++++.++.+|+.+++.|+ 
T Consensus       264 ~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~----------~~q~~A~~al~~aa~~~~~R~~I~~~gv-  332 (810)
T 3now_A          264 KVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDE----------LQQRVACECLIAASSKKDKAKALCEQGV-  332 (810)
T ss_dssp             HHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSCH----------HHHHHHHHHHHHHTTSHHHHHTTHHHHH-
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCCH----------HHHHHHHHHHHHHcCCcHHHHHHHHcCc-
Confidence            57889999999884 67777776 77999999999999865          8999999999999988999999999986 


Q ss_pred             HHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcCh-hhhhhhhccCC----cHHHHHHhcCC--CHHHHHHHHHHHH
Q 005282          146 PHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENA-NIKTRVRVEDG----IPPLVELLKFV--DVKVQRAAAGALR  218 (704)
Q Consensus       146 ~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~~----i~~L~~ll~~~--~~~~~~~a~~~L~  218 (704)
                      +.|..++++.+.        .++..|+++|+++..... +.....+..|.    ++.++++|.++  +++++..|+++|.
T Consensus       333 ~~L~~Ll~s~~~--------~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLa  404 (810)
T 3now_A          333 DILKRLYHSKND--------GIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLA  404 (810)
T ss_dssp             HHHHHHTTCSCH--------HHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHH
T ss_pred             HHHHHHHcCCCH--------HHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence            999999986543        889999999999974221 22223444454    55677888877  8999999999999


Q ss_pred             HhccCCchhhHHhH-hcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCh-----------------------------h
Q 005282          219 TLAFKNDENKKLIV-ECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSP-----------------------------S  268 (704)
Q Consensus       219 ~l~~~~~~~~~~~~-~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-----------------------------~  268 (704)
                      +|+. .++.+..++ +.|++|.|+.+|+++++.++..++++|+||+.+.+                             .
T Consensus       405 yLS~-~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~  483 (810)
T 3now_A          405 YLTL-DAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDF  483 (810)
T ss_dssp             HHTT-SHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHH
T ss_pred             HHhC-CcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHH
Confidence            9997 677777766 67999999999999999999999999999997542                             1


Q ss_pred             hH---HHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHH
Q 005282          269 IK---KEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGR  345 (704)
Q Consensus       269 ~~---~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~  345 (704)
                      ..   +.+++.|+++.|+.++.++++.++..|+|+|+|++. +++++..+++.|++++|+.++.++++..++.|+++|+|
T Consensus       484 v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~n  562 (810)
T 3now_A          484 INKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALAR  562 (810)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHH
Confidence            22   678899999999999999999999999999999985 67789999999999999999999999999999999999


Q ss_pred             hhcCCchhhhH---HhhCChHHHHHhhcCC-ChhHHHHHHHHHHHcccC-CchhhHHHhhCCccccccccccccc-----
Q 005282          346 LAQDTHNQAGI---AQDGGILPLLKLLDSK-NGSLQHNAAFALYGLADN-EDNVADLVRVGGVQKLQDGEFTVQP-----  415 (704)
Q Consensus       346 l~~~~~~~~~~---~~~~~~~~L~~ll~~~-~~~v~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~l~~~~~~~~~-----  415 (704)
                      ++.+.+....+   ...+++++|+.+|+++ +...+..|+++|.||+.. ++++..++++|+++.|++.......     
T Consensus       563 L~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~  642 (810)
T 3now_A          563 IGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRA  642 (810)
T ss_dssp             HHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHH
T ss_pred             HhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHH
Confidence            99764433322   1246999999999865 334567899999999985 5778899999999998765443322     


Q ss_pred             chHHHHHHHHHHH--HH-hh-cchhHHHHHHHhhccHHHHHHHHHHHHhccC-CCccceeeec-CCcHHHHHHHHhhcch
Q 005282          416 TKDCVARTLKRLE--EK-VH-GRVLNHLLYLLRVADRAVKRRVTLALAHLCA-PDDCKTIFID-NNGLELLLGLLESTSV  489 (704)
Q Consensus       416 ~~~~~~~~~~~~~--~~-~~-~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~l~~-~~~i~~L~~ll~~~~~  489 (704)
                      ..+++++.....+  .. +. .+.++.|+.++.+++..++..|+|+|++++. ++.....+.+ .||++.|++++.+++.
T Consensus       643 A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~  722 (810)
T 3now_A          643 AAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSP  722 (810)
T ss_dssp             HHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSH
T ss_pred             HHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCH
Confidence            3344554432222  11 22 5789999999999999999999999999977 5555555666 8999999999999999


Q ss_pred             hhhhhHHHHHHHHhhh
Q 005282          490 KQREESSVALYKLATK  505 (704)
Q Consensus       490 ~~~~~a~~~L~~L~~~  505 (704)
                      .+|..|+++|.|++..
T Consensus       723 ~vq~~A~~aL~NL~~~  738 (810)
T 3now_A          723 AVQHRGIVIILNMINA  738 (810)
T ss_dssp             HHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhC
Confidence            9999999999999874

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=100.00  E-value=1.1e-35  Score=325.23  Aligned_cols=403  Identities=20%  Similarity=0.275  Sum_probs=347.4

Q ss_pred             HHHHHHHhhhccCCchhhHHHHHHHHHHHHHhhc-Ch-hHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHH
Q 005282           47 IRAQIDILNSKFSSDETDRAAAKTASHALVEFAK-NE-EIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAF  124 (704)
Q Consensus        47 ~~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~-~~-~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~  124 (704)
                      ++.++..|    .+  ++...+..|++.|.++.. ++ +....+++.|++|.|+++|.+++.         +.++..|++
T Consensus        76 l~~lv~~L----~s--~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~---------~~v~~~A~~  140 (528)
T 4b8j_A           76 LPAMIGGV----YS--DDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDF---------PQLQFEAAW  140 (528)
T ss_dssp             HHHHHHHH----TS--SCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTC---------HHHHHHHHH
T ss_pred             HHHHHHHH----cC--CCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCC---------HHHHHHHHH
Confidence            55555554    22  345578899999999865 33 566788899999999999998752         489999999


Q ss_pred             HHHhhc-CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHh-
Q 005282          125 ALGLLA-VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELL-  202 (704)
Q Consensus       125 ~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll-  202 (704)
                      +|++++ ++++.+..+.+.|+++.|+.+|.+.+.        .++..|+++|++++.+++..+..+...|+++.|+.++ 
T Consensus       141 ~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~--------~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~  212 (528)
T 4b8j_A          141 ALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSD--------DVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLN  212 (528)
T ss_dssp             HHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCH--------HHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCC
T ss_pred             HHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCH--------HHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHh
Confidence            999999 679999999999999999999998654        9999999999999988888899999999999999999 


Q ss_pred             cCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHH
Q 005282          203 KFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPV  282 (704)
Q Consensus       203 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L  282 (704)
                      .+.++.++..++++|.+++.+.+. .......++++.|+.++.++++.++..++++|++++...+...+.+...|+++.|
T Consensus       213 ~~~~~~v~~~a~~~L~~L~~~~~~-~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~L  291 (528)
T 4b8j_A          213 EHTKLSMLRNATWTLSNFCRGKPQ-PSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRL  291 (528)
T ss_dssp             TTCCHHHHHHHHHHHHHHHCSSSC-CCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHcCCCC-CcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHH
Confidence            578999999999999999975433 3344568899999999999999999999999999998877777888899999999


Q ss_pred             HHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCC-CHHHHHHHHHHHHHhhcCCch-hhhHHhhC
Q 005282          283 IGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSP-DSQLKEMSAFALGRLAQDTHN-QAGIAQDG  360 (704)
Q Consensus       283 ~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~  360 (704)
                      +.+|.++++.++..|+++|++++.+++.....+.+.|+++.|+.++.++ ++.++..|+++|+|++.+... ...+...|
T Consensus       292 v~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~  371 (528)
T 4b8j_A          292 VELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAG  371 (528)
T ss_dssp             HHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTT
T ss_pred             HHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCC
Confidence            9999999999999999999999987777788888999999999999998 999999999999999986544 45577789


Q ss_pred             ChHHHHHhhcCCChhHHHHHHHHHHHccc--CCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHH
Q 005282          361 GILPLLKLLDSKNGSLQHNAAFALYGLAD--NEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNH  438 (704)
Q Consensus       361 ~~~~L~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (704)
                      +++.|+.++.++++.++..|+++|.+++.  +++....+++.|++                                 +.
T Consensus       372 ~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i---------------------------------~~  418 (528)
T 4b8j_A          372 IIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCI---------------------------------KP  418 (528)
T ss_dssp             CHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCH---------------------------------HH
T ss_pred             CHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCH---------------------------------HH
Confidence            99999999999999999999999999986  46677777776654                                 45


Q ss_pred             HHHHHhhccHHHHHHHHHHHHhccCCC------------ccceeeecCCcHHHHHHHHhhcchhhhhhHHHHHHHHhhhc
Q 005282          439 LLYLLRVADRAVKRRVTLALAHLCAPD------------DCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLATKA  506 (704)
Q Consensus       439 L~~ll~~~~~~v~~~a~~~L~~l~~~~------------~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~  506 (704)
                      |+.++..+++.++..++++|.+++...            .....+.+.||++.|..+..+.+++++..|..+|.++....
T Consensus       419 L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~~e  498 (528)
T 4b8j_A          419 LCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWMDE  498 (528)
T ss_dssp             HHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC--
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc
Confidence            777888999999999999999995422            24566778899999999999999999999999999887643

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=100.00  E-value=8.3e-36  Score=310.75  Aligned_cols=362  Identities=18%  Similarity=0.229  Sum_probs=300.3

Q ss_pred             HHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCC--CCCCCchHHHHHHHHHHHhhc-CChhhHHHHHHcCCc-
Q 005282           70 TASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTN--AQIPYEHEVEKECAFALGLLA-VKPEHQQIIVDTGAL-  145 (704)
Q Consensus        70 ~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~--~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~~~~g~l-  145 (704)
                      +.++.|..++.+++.+..++++|++|.|+++|+..+....  .+-.-+++++.+|+|+|.||+ +.|+..+...+.|++ 
T Consensus        48 ~~~~~ll~~~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~  127 (458)
T 3nmz_A           48 DMSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLH  127 (458)
T ss_dssp             HHHHHHHHHHSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHH
Confidence            3789999999999999999999999999999997532000  000014699999999999999 888888888888888 


Q ss_pred             ---------HHHHHHHhhccCCCCC------cchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcC------
Q 005282          146 ---------PHLVSLLKQYKNGGNS------RALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKF------  204 (704)
Q Consensus       146 ---------~~L~~lL~~~~~~~~~------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~------  204 (704)
                               +.+++++.+...+...      .+....+-+|+|+|.|++. ++++|..+.+.|++++|+.++..      
T Consensus       128 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~-~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~  206 (458)
T 3nmz_A          128 LLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYG  206 (458)
T ss_dssp             HHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHHhhhhcccc
Confidence                     6677777765311110      0111233499999999986 58899999999999999999952      


Q ss_pred             -----CCHHHHHHHHHHHHHhccCCchhhHHhHh-cCChHHHHHhhcCCCHHHHHHHHHHHHHHhcC-ChhhHHHHHHcC
Q 005282          205 -----VDVKVQRAAAGALRTLAFKNDENKKLIVE-CNALPTLVLMLRSEDASVHFEAVGVIGNLVHS-SPSIKKEVILAG  277 (704)
Q Consensus       205 -----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~  277 (704)
                           .++.++..|+++|.||+.+++.++..+.. .|.+|.|+.+|.+++++++..|+++|.||+.. ++..+..+.+.|
T Consensus       207 ~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~G  286 (458)
T 3nmz_A          207 LTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVG  286 (458)
T ss_dssp             TCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTT
T ss_pred             cccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcC
Confidence                 34789999999999999877667777764 45599999999999999999999999999975 567888899999


Q ss_pred             CHHHHHHHh-cCCChhHHHHHHHHHHHHhccCCcchHHHH-hcCChHHHHHhhCCCCH----HHHHHHHHHHHHhhc---
Q 005282          278 ALQPVIGLL-SSSCSESKREAALLLGQFAAADSNSKVHIV-QRGAVRPLIEMLQSPDS----QLKEMSAFALGRLAQ---  348 (704)
Q Consensus       278 ~l~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~~~i~~L~~ll~~~~~----~v~~~a~~~L~~l~~---  348 (704)
                      +++.|+.+| .+.+..+++.++.+|+|++.+.++++..+. ..|+++.|+.++.+++.    ++++.|+++|.|++.   
T Consensus       287 aI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a  366 (458)
T 3nmz_A          287 SVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIA  366 (458)
T ss_dssp             HHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhccc
Confidence            999999975 566788999999999999975666666676 78999999999987643    589999999999995   


Q ss_pred             -CCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcc-cCCchhhHHHhhCCcccccccccccccchHHHHHHHHH
Q 005282          349 -DTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLA-DNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKR  426 (704)
Q Consensus       349 -~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~-~~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~  426 (704)
                       +++++..+.+.|+++.|+.+|.+++..+++.|+++|.|++ .+++++..+++.|+++.                     
T Consensus       367 ~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~---------------------  425 (458)
T 3nmz_A          367 TNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSM---------------------  425 (458)
T ss_dssp             TCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHH---------------------
T ss_pred             CCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHH---------------------
Confidence             6677778889999999999999999999999999999999 58889999999887655                     


Q ss_pred             HHHHhhcchhHHHHHHHhhccHHHHHHHHHHHHhccCCC
Q 005282          427 LEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPD  465 (704)
Q Consensus       427 ~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  465 (704)
                                  |+.++.++++.+++.|+++|.||+.+.
T Consensus       426 ------------Lv~LL~s~~~~v~~~Aa~AL~nL~~~~  452 (458)
T 3nmz_A          426 ------------LKNLIHSKHKMIAMGSAAALRNLMANR  452 (458)
T ss_dssp             ------------HHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred             ------------HHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence                        566788899999999999999996644

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=100.00  E-value=2.2e-34  Score=314.84  Aligned_cols=404  Identities=20%  Similarity=0.274  Sum_probs=345.8

Q ss_pred             HHHhhhccCCchhhHHHHHHHHHHHHHhhcC--hhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHh
Q 005282           51 IDILNSKFSSDETDRAAAKTASHALVEFAKN--EEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGL  128 (704)
Q Consensus        51 ~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~--~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~  128 (704)
                      ++.+...+.++  +...+..|++.|.++...  ......+++.|+++.|+++|.+++         ++.++..|+++|++
T Consensus        89 i~~lv~~L~s~--~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~---------~~~v~~~A~~~L~~  157 (530)
T 1wa5_B           89 LPQMTQQLNSD--DMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQ---------PEMLQLEAAWALTN  157 (530)
T ss_dssp             HHHHHHHHSCS--SHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTS---------CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCC--CHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCC---------CHHHHHHHHHHHHH
Confidence            34444444333  355788999999998652  344567789999999999999873         24899999999999


Q ss_pred             hc-CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCH
Q 005282          129 LA-VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDV  207 (704)
Q Consensus       129 l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~  207 (704)
                      ++ .+++.+..+.+.|+++.|+.+|.+.+.        .++..|+++|++++.+++..+..+...|+++.|+.++.+.++
T Consensus       158 l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~--------~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~  229 (530)
T 1wa5_B          158 IASGTSAQTKVVVDADAVPLFIQLLYTGSV--------EVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKP  229 (530)
T ss_dssp             HTTSCHHHHHHHHHTTCHHHHHHHHHHCCH--------HHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCH
T ss_pred             HhCCCHHHHHHHHHCCCHHHHHHHHcCCCH--------HHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCH
Confidence            99 678899999999999999999997654        999999999999998888889989999999999999999999


Q ss_pred             HHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhc
Q 005282          208 KVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLS  287 (704)
Q Consensus       208 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~  287 (704)
                      .++..++++|.+++.+...........++++.|+.++.++++.++..++++|++++...+.....+...|+++.|+.++.
T Consensus       230 ~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~  309 (530)
T 1wa5_B          230 SLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLS  309 (530)
T ss_dssp             HHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGG
T ss_pred             HHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHC
Confidence            99999999999999755344445566889999999999999999999999999999887777888888999999999999


Q ss_pred             CCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCch-hhhHHhhCChHHHH
Q 005282          288 SSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHN-QAGIAQDGGILPLL  366 (704)
Q Consensus       288 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~~~L~  366 (704)
                      ++++.++..|+++|++++.+++.....+.+.|+++.|+.++.++++.++..|+++|++++.+... ...++..|+++.|+
T Consensus       310 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~  389 (530)
T 1wa5_B          310 HESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLV  389 (530)
T ss_dssp             CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHH
T ss_pred             CCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHH
Confidence            99999999999999999987777777788899999999999999999999999999999976543 45567789999999


Q ss_pred             HhhcCCChhHHHHHHHHHHHccc--CC--chhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHH
Q 005282          367 KLLDSKNGSLQHNAAFALYGLAD--NE--DNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYL  442 (704)
Q Consensus       367 ~ll~~~~~~v~~~a~~~L~~l~~--~~--~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l  442 (704)
                      .++.++++.++..|+++|.+++.  .+  +....+++.|+                                 ++.|+.+
T Consensus       390 ~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~---------------------------------l~~L~~l  436 (530)
T 1wa5_B          390 KLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGC---------------------------------IKPLCDL  436 (530)
T ss_dssp             HHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTC---------------------------------HHHHHHH
T ss_pred             HHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCC---------------------------------HHHHHHH
Confidence            99999999999999999999985  33  56666666555                                 4557778


Q ss_pred             HhhccHHHHHHHHHHHHhccCC------------CccceeeecCCcHHHHHHHHhhcchhhhhhHHHHHHHHhhhc
Q 005282          443 LRVADRAVKRRVTLALAHLCAP------------DDCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLATKA  506 (704)
Q Consensus       443 l~~~~~~v~~~a~~~L~~l~~~------------~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~  506 (704)
                      +...++.++..++++|.+++..            ......+.+.||++.|..+..+++++++..|..+|.++....
T Consensus       437 l~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~~~  512 (530)
T 1wa5_B          437 LEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEE  512 (530)
T ss_dssp             TTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSSC
T ss_pred             HhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCcc
Confidence            8889999999999999999542            123455678899999999999999999999999999887643

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=100.00  E-value=1.9e-35  Score=324.75  Aligned_cols=436  Identities=16%  Similarity=0.168  Sum_probs=346.0

Q ss_pred             HHHHhhhccCCchhhHHHHHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhh
Q 005282           50 QIDILNSKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLL  129 (704)
Q Consensus        50 l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l  129 (704)
                      .++.+..++++  ++...+..|++++.+++.++..++.+++.|+ +.|+.++++.+.          .++..|+.+|+++
T Consensus       291 ~v~~li~Ll~s--~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv-~~L~~Ll~s~~~----------~vr~~Al~~L~kl  357 (810)
T 3now_A          291 ILQMILAMATT--DDELQQRVACECLIAASSKKDKAKALCEQGV-DILKRLYHSKND----------GIRVRALVGLCKL  357 (810)
T ss_dssp             HHHHHHHHHHS--SCHHHHHHHHHHHHHHTTSHHHHHTTHHHHH-HHHHHHTTCSCH----------HHHHHHHHHHHHH
T ss_pred             hHHHHHHHhCC--CCHHHHHHHHHHHHHHcCCcHHHHHHHHcCc-HHHHHHHcCCCH----------HHHHHHHHHHHHh
Confidence            33444444433  3455678999999999999999999999885 999999997654          8999999999999


Q ss_pred             cC-Ch-hhHHHHHHcCC----cHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhh-ccCCcHHHHHHh
Q 005282          130 AV-KP-EHQQIIVDTGA----LPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVR-VEDGIPPLVELL  202 (704)
Q Consensus       130 ~~-~~-~~~~~~~~~g~----l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~~~i~~L~~ll  202 (704)
                      +. .. +.....++.|.    ++.+.++|.++..+      .+++..++|+|++++. .+..+..++ +.|++|.|+.++
T Consensus       358 ~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d------~~v~~~AveaLayLS~-~~~vk~~lv~d~g~Ip~LV~LL  430 (810)
T 3now_A          358 GSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKD------KDIRRWAADGLAYLTL-DAECKEKLIEDKASIHALMDLA  430 (810)
T ss_dssp             HTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCC------SSHHHHHHHHHHHHTT-SHHHHHHHHHCHHHHHHHHHHH
T ss_pred             ccccccCccccchhhccHHHHHHHHHHHhcCCCCC------HHHHHHHHHHHHHHhC-CcHHHHHHHHccchHHHHHHHh
Confidence            83 21 22222233343    56677787776211      2899999999999997 455555555 579999999999


Q ss_pred             cCCCHHHHHHHHHHHHHhccCCch-----------------------------hh---HHhHhcCChHHHHHhhcCCCHH
Q 005282          203 KFVDVKVQRAAAGALRTLAFKNDE-----------------------------NK---KLIVECNALPTLVLMLRSEDAS  250 (704)
Q Consensus       203 ~~~~~~~~~~a~~~L~~l~~~~~~-----------------------------~~---~~~~~~~~i~~L~~lL~~~~~~  250 (704)
                      +++++.++..++++|.|++.+.+.                             .+   +.+++.|++|.|+.++.++++.
T Consensus       431 ~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~  510 (810)
T 3now_A          431 RGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHN  510 (810)
T ss_dssp             HTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHH
T ss_pred             CCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHH
Confidence            999999999999999999975421                             12   5678999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHH--HHhcCChHHHHHhh
Q 005282          251 VHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVH--IVQRGAVRPLIEML  328 (704)
Q Consensus       251 v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~--~~~~~~i~~L~~ll  328 (704)
                      +++.|+|+|+|++. ++..+..+++.|+++.|+.+|.++++..++.|+++|.|++...+.....  ....+++++|+.+|
T Consensus       511 vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL  589 (810)
T 3now_A          511 SQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLL  589 (810)
T ss_dssp             HHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTT
T ss_pred             HHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHh
Confidence            99999999999995 4778999999999999999999999999999999999998654332110  01146999999999


Q ss_pred             CCC-CHHHHHHHHHHHHHhhcCC-chhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcccCCchhhHHHh-hCCccc
Q 005282          329 QSP-DSQLKEMSAFALGRLAQDT-HNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADLVR-VGGVQK  405 (704)
Q Consensus       329 ~~~-~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~-~g~i~~  405 (704)
                      .++ +...+..|+++|.||+.++ +.+..+++.|+++.|+.++.++++.++..|+++|+|++.+++.+..++. .|+++.
T Consensus       590 ~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~  669 (810)
T 3now_A          590 QQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKF  669 (810)
T ss_dssp             STTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHH
Confidence            865 4445678999999999885 5677889999999999999999999999999999999999988888885 678887


Q ss_pred             cccccccccc-chHHHHHHHHHHH--------HHhh-cchhHHHHHHHhhccHHHHHHHHHHHHhccC-CCccceeeecC
Q 005282          406 LQDGEFTVQP-TKDCVARTLKRLE--------EKVH-GRVLNHLLYLLRVADRAVKRRVTLALAHLCA-PDDCKTIFIDN  474 (704)
Q Consensus       406 l~~~~~~~~~-~~~~~~~~~~~~~--------~~~~-~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~l~~~  474 (704)
                      |+........ .....+..+.++.        ..+. .+.+++|+.++.+++..++..|+|+|.|++. +++....+.+.
T Consensus       670 Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~e~~~~l~e~  749 (810)
T 3now_A          670 LALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFET  749 (810)
T ss_dssp             HHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHTS
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHC
Confidence            7654433322 1222223332222        2234 6899999999999999999999999999965 45667888899


Q ss_pred             CcHHHHHHHHhhc---chhhhhhHHHHHHHHhhhc
Q 005282          475 NGLELLLGLLEST---SVKQREESSVALYKLATKA  506 (704)
Q Consensus       475 ~~i~~L~~ll~~~---~~~~~~~a~~~L~~L~~~~  506 (704)
                      ||++.|+.+++.+   ++.+...|..+|.++....
T Consensus       750 G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g  784 (810)
T 3now_A          750 DIMELLSGLGQLPDDTRAKAREVATQCLAAAERYR  784 (810)
T ss_dssp             THHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCC
Confidence            9999999999654   7889999999999998766

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=100.00  E-value=2.5e-34  Score=311.04  Aligned_cols=365  Identities=22%  Similarity=0.307  Sum_probs=312.5

Q ss_pred             HHHhhhccCCchhhHHHHHHHHHHHHHhhc-ChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhh
Q 005282           51 IDILNSKFSSDETDRAAAKTASHALVEFAK-NEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLL  129 (704)
Q Consensus        51 ~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l  129 (704)
                      ++.|+.+++.. +++.++.+|+|+|.+++. ++++++.+++.|+||.|+.+|.+++.          ++++.|+|+|+||
T Consensus       102 ip~LV~lL~~~-~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~----------~v~e~A~~aL~nL  170 (510)
T 3ul1_B          102 IPKFVSFLGKT-DCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHA----------HISEQAVWALGNI  170 (510)
T ss_dssp             HHHHHHHTTCT-TCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCH----------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCC-CCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCH----------HHHHHHHHHHHHH
Confidence            45555655433 345578999999999987 68999999999999999999998865          9999999999999


Q ss_pred             c-CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHH
Q 005282          130 A-VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVK  208 (704)
Q Consensus       130 ~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~  208 (704)
                      + +++++|..+.+.|+++.|+.++...+....   ...+++.++|++.+++.............+++|.|+.++.+++++
T Consensus       171 a~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~---~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~  247 (510)
T 3ul1_B          171 AGDGSAFRDLVIKHGAIDPLLALLAVPDLSTL---ACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPE  247 (510)
T ss_dssp             HTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGS---CHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHH
T ss_pred             HhCCHHHHHHHHHcCChHHHHHHHHhccchhh---hHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHH
Confidence            9 789999999999999999999987543211   126788999999999976655556566678899999999999999


Q ss_pred             HHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcC
Q 005282          209 VQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSS  288 (704)
Q Consensus       209 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~  288 (704)
                      ++..++++|++|+.+.++....+.+.|+++.|+.+|.++++.++..++++|+|++..++.....+.+.|+++.|+.++.+
T Consensus       248 v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~  327 (510)
T 3ul1_B          248 VLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTN  327 (510)
T ss_dssp             HHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTC
T ss_pred             HHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcC
Confidence            99999999999998777777888899999999999999999999999999999999988999999999999999999999


Q ss_pred             CChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC--chhhhHHhhCChHHHH
Q 005282          289 SCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDT--HNQAGIAQDGGILPLL  366 (704)
Q Consensus       289 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~~~~~~L~  366 (704)
                      ++..++..|+++|+|++.+++..+..+.+.|+++.|+.++.+++.+++..|+++|+|++.+.  +....+++.|++++|+
T Consensus       328 ~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~  407 (510)
T 3ul1_B          328 PKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLM  407 (510)
T ss_dssp             SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHH
Confidence            99999999999999999888888889999999999999999999999999999999999743  4456688999999999


Q ss_pred             HhhcCCChhHHHHHHHHHHHcccCC-------chhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHH
Q 005282          367 KLLDSKNGSLQHNAAFALYGLADNE-------DNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHL  439 (704)
Q Consensus       367 ~ll~~~~~~v~~~a~~~L~~l~~~~-------~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  439 (704)
                      ++|.+.+++++..++.+|.++....       .....+.+.||+                                 +.+
T Consensus       408 ~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl---------------------------------~~i  454 (510)
T 3ul1_B          408 NLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGL---------------------------------DKI  454 (510)
T ss_dssp             HGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHH---------------------------------HHH
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcH---------------------------------HHH
Confidence            9999999999999999999986311       112233344443                                 445


Q ss_pred             HHHHhhccHHHHHHHHHHHHhcc
Q 005282          440 LYLLRVADRAVKRRVTLALAHLC  462 (704)
Q Consensus       440 ~~ll~~~~~~v~~~a~~~L~~l~  462 (704)
                      -.+..+++.++...|...|-.+-
T Consensus       455 e~Lq~~~n~~i~~~A~~iie~yf  477 (510)
T 3ul1_B          455 EALQRHENESVYKASLNLIEKYF  477 (510)
T ss_dssp             HHGGGCSSHHHHHHHHHHHHHHC
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHC
Confidence            55667788999999999997763

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=100.00  E-value=1.9e-34  Score=306.63  Aligned_cols=363  Identities=21%  Similarity=0.229  Sum_probs=305.3

Q ss_pred             hCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHH
Q 005282           90 DNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVI  168 (704)
Q Consensus        90 ~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~  168 (704)
                      ..+.++.|+++|.+.+.          +++..|+++|.+++ .+++++..+.+.|+||.|+++|++.+.        +++
T Consensus        46 ~~~~i~~LV~~L~s~~~----------~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~--------~vq  107 (584)
T 3l6x_A           46 RQPELPEVIAMLGFRLD----------AVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKK--------EVH  107 (584)
T ss_dssp             CCCCHHHHHHHTTCSCH----------HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSH--------HHH
T ss_pred             ccccHHHHHHHHCCCCH----------HHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCH--------HHH
Confidence            57889999999998754          99999999999999 799999999999999999999998765        999


Q ss_pred             HHHHHHHHHhhhc-ChhhhhhhhccCCcHHHHHHhcC-CCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhc-
Q 005282          169 RRAADAITNLAHE-NANIKTRVRVEDGIPPLVELLKF-VDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLR-  245 (704)
Q Consensus       169 ~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~-  245 (704)
                      +.|+++|.||+.. +++++..+.+.|+++.|+.+|++ .+.++++.++++|++|+. +++++..+++ ++++.|++++. 
T Consensus       108 ~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~-~~~~k~~I~~-~alp~Lv~LL~~  185 (584)
T 3l6x_A          108 LGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSS-HDSIKMEIVD-HALHALTDEVII  185 (584)
T ss_dssp             HHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTT-SGGGHHHHHH-HTHHHHHHHTHH
T ss_pred             HHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhhHHHHh-ccHHHHHHHHhc
Confidence            9999999999974 68899999999999999999997 688999999999999997 7888888885 57999999872 


Q ss_pred             -----------------CCCHHHHHHHHHHHHHHhcCChhhHHHHHHc-CCHHHHHHHhcC------CChhHHHHHHHHH
Q 005282          246 -----------------SEDASVHFEAVGVIGNLVHSSPSIKKEVILA-GALQPVIGLLSS------SCSESKREAALLL  301 (704)
Q Consensus       246 -----------------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~l~~L~~ll~~------~~~~~~~~a~~~L  301 (704)
                                       ..++.+++.|+++|.||+..+++.++.+.+. |+++.|+.++.+      .+....+.|+++|
T Consensus       186 p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL  265 (584)
T 3l6x_A          186 PHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLL  265 (584)
T ss_dssp             HHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHH
T ss_pred             ccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHH
Confidence                             2367999999999999998888878888875 556799999874      4567899999999


Q ss_pred             HHHhccCC-------------------------cchHHHHhcCChHHHHHhhC-CCCHHHHHHHHHHHHHhhcCCc----
Q 005282          302 GQFAAADS-------------------------NSKVHIVQRGAVRPLIEMLQ-SPDSQLKEMSAFALGRLAQDTH----  351 (704)
Q Consensus       302 ~~l~~~~~-------------------------~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~----  351 (704)
                      .|++....                         .....+.+.++++.|+.+++ +.++.+++.|+++|+||+.+..    
T Consensus       266 ~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~  345 (584)
T 3l6x_A          266 RNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGR  345 (584)
T ss_dssp             HHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHH
T ss_pred             HHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccH
Confidence            99985410                         11112223355678889996 5689999999999999997652    


Q ss_pred             -hhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcccCCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHH
Q 005282          352 -NQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEK  430 (704)
Q Consensus       352 -~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~  430 (704)
                       .+..+.+.++++.|+++|.+++..+++.|+++|+||+.++.++..| ..|+++                          
T Consensus       346 ~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I-~~g~ip--------------------------  398 (584)
T 3l6x_A          346 YIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELI-GKHAIP--------------------------  398 (584)
T ss_dssp             HHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHH-HHHHHH--------------------------
T ss_pred             HHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHH-HhCCHH--------------------------
Confidence             2334456789999999999999999999999999999988777655 555544                          


Q ss_pred             hhcchhHHHHHHHhhc--------cHHHHHHHHHHHHhcc-CCCccceeeecCCcHHHHHHHHhhc--chhhhhhHHHHH
Q 005282          431 VHGRVLNHLLYLLRVA--------DRAVKRRVTLALAHLC-APDDCKTIFIDNNGLELLLGLLEST--SVKQREESSVAL  499 (704)
Q Consensus       431 ~~~~~~~~L~~ll~~~--------~~~v~~~a~~~L~~l~-~~~~~~~~l~~~~~i~~L~~ll~~~--~~~~~~~a~~~L  499 (704)
                             .|+.+|..+        ..++...|+++|.|++ .++.++..+.+.|||+.|+.++.++  .+.+++.|+++|
T Consensus       399 -------~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL  471 (584)
T 3l6x_A          399 -------NLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVL  471 (584)
T ss_dssp             -------HHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHH
T ss_pred             -------HHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHH
Confidence                   456666554        4678899999999994 5778888889999999999999975  889999999999


Q ss_pred             HHHhhhc
Q 005282          500 YKLATKA  506 (704)
Q Consensus       500 ~~L~~~~  506 (704)
                      ++|..+.
T Consensus       472 ~nl~~~~  478 (584)
T 3l6x_A          472 QTIWGYK  478 (584)
T ss_dssp             HHHHTSH
T ss_pred             HHHHcCH
Confidence            9998766

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=100.00  E-value=7.7e-35  Score=319.40  Aligned_cols=418  Identities=20%  Similarity=0.223  Sum_probs=356.4

Q ss_pred             hHHHHHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHHHHHc
Q 005282           64 DRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQIIVDT  142 (704)
Q Consensus        64 ~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~~~~  142 (704)
                      +...+..++.+|.+++.+++++..+.+.|+++.|+++|++++.          +++..|+++|.+++ .++..+..+.+.
T Consensus        73 ~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~~~----------~v~~~a~~~L~~l~~~~~~~~~~i~~~  142 (529)
T 1jdh_A           73 DVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVD----------SVLFYAITTLHNLLLHQEGAKMAVRLA  142 (529)
T ss_dssp             CHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCH----------HHHHHHHHHHHHHHHHCTTHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHcCCCH----------HHHHHHHHHHHHHhcCCcchHHHHHHc
Confidence            4557899999999999998899999999999999999998765          99999999999999 667888899999


Q ss_pred             CCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCC-HHHHHHHHHHHHHhc
Q 005282          143 GALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVD-VKVQRAAAGALRTLA  221 (704)
Q Consensus       143 g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~~~~~a~~~L~~l~  221 (704)
                      |+++.|+.++.+.+.        .++..++.+|.+++..+++.+..+...|+++.|+.++++++ ...+..++.+|++++
T Consensus       143 g~i~~L~~ll~~~~~--------~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~  214 (529)
T 1jdh_A          143 GGLQKMVALLNKTNV--------KFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLS  214 (529)
T ss_dssp             THHHHHHHGGGCCCH--------HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHhcCCH--------HHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHh
Confidence            999999999987543        88999999999999888899999999999999999999654 567778899999999


Q ss_pred             cCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHH
Q 005282          222 FKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLL  301 (704)
Q Consensus       222 ~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L  301 (704)
                      . ++.++..+.+.|+++.|+.++.++++.++..++++|.+++...+...   ...++++.|+.++.+++++++..++++|
T Consensus       215 ~-~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~i~~L~~ll~~~~~~v~~~a~~~L  290 (529)
T 1jdh_A          215 V-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE---GMEGLLGTLVQLLGSDDINVVTCAAGIL  290 (529)
T ss_dssp             T-STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS---CCHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred             c-CcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhH---HHHhHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            6 78889999999999999999999999999999999999997643321   1236799999999999999999999999


Q ss_pred             HHHhccCCcchHHHHhcCChHHHHHhhCC--CCHHHHHHHHHHHHHhhcCCc----hhhhHHhhCChHHHHHhhcCCC-h
Q 005282          302 GQFAAADSNSKVHIVQRGAVRPLIEMLQS--PDSQLKEMSAFALGRLAQDTH----NQAGIAQDGGILPLLKLLDSKN-G  374 (704)
Q Consensus       302 ~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~----~~~~~~~~~~~~~L~~ll~~~~-~  374 (704)
                      ++++..+++.+..+.+.|+++.|+.++.+  .++.++..++++|+|++.+..    .+..+...|+++.|++++.+++ +
T Consensus       291 ~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~  370 (529)
T 1jdh_A          291 SNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHW  370 (529)
T ss_dssp             HHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCH
T ss_pred             HHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccch
Confidence            99998777788889999999999999975  347999999999999997643    3567888899999999998876 5


Q ss_pred             hHHHHHHHHHHHcccCCchhhHHHhhCCcccccccccccccc----h-------------------HHHHHHHHHH----
Q 005282          375 SLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPT----K-------------------DCVARTLKRL----  427 (704)
Q Consensus       375 ~v~~~a~~~L~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~~----~-------------------~~~~~~~~~~----  427 (704)
                      .++..++++|+|++.+++++..+.+.|+++.|++........    .                   ......+..+    
T Consensus       371 ~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~  450 (529)
T 1jdh_A          371 PLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDV  450 (529)
T ss_dssp             HHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSH
T ss_pred             HHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCc
Confidence            999999999999999888889999999998886532211100    0                   0111111111    


Q ss_pred             ---HHHhhcchhHHHHHHHhhccHHHHHHHHHHHHhccCCCccceeeecCCcHHHHHHHHhhcchhhhhhHHHHHHHHh
Q 005282          428 ---EEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPDDCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLA  503 (704)
Q Consensus       428 ---~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~  503 (704)
                         ......+.++.|+.++.++++.++..++++|.+++.++..+..+.+.||++.|.+++.+++++++..|.++|.+|+
T Consensus       451 ~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l~  529 (529)
T 1jdh_A          451 HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS  529 (529)
T ss_dssp             HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHC
T ss_pred             hHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhcC
Confidence               1123567889999999999999999999999999887777888889999999999999999999999999999874

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=100.00  E-value=5.5e-34  Score=310.29  Aligned_cols=364  Identities=23%  Similarity=0.314  Sum_probs=313.2

Q ss_pred             HHHhhhccCCchhhHHHHHHHHHHHHHhhc-ChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhh
Q 005282           51 IDILNSKFSSDETDRAAAKTASHALVEFAK-NEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLL  129 (704)
Q Consensus        51 ~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l  129 (704)
                      ++.|+.++... +++.++.+|+|+|.+++. +++.+..+++.|+||.|+.+|.+++.          +++..|+|+|+||
T Consensus       121 ip~Lv~lL~~~-~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~----------~v~e~A~~aL~nL  189 (529)
T 3tpo_A          121 IPKFVSFLGKT-DCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHA----------HISEQAVWALGNI  189 (529)
T ss_dssp             HHHHHHHHTCT-TCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCH----------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCH----------HHHHHHHHHHHHH
Confidence            34455555432 345688999999999988 57888999999999999999999876          9999999999999


Q ss_pred             c-CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHH
Q 005282          130 A-VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVK  208 (704)
Q Consensus       130 ~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~  208 (704)
                      + ++++++..+.+.|+++.|+.+|........   ...+++.++|++.+++.+...........+++|.|+.++.+++++
T Consensus       190 a~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~---~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~  266 (529)
T 3tpo_A          190 AGAGSAFRDLVIKHGAIDPLLALLAVPDLSTL---ACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPE  266 (529)
T ss_dssp             HTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGS---CHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHH
T ss_pred             hccCHHHHHHHHHcCCcHHHHHHHhccchhHh---HHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHH
Confidence            9 789999999999999999999987543211   126788999999999986666666666678999999999999999


Q ss_pred             HHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcC
Q 005282          209 VQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSS  288 (704)
Q Consensus       209 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~  288 (704)
                      ++..++++|.+++.+.++....+...|+++.|+.+|.++++.++..++++|+|++.+++.....+.+.|+++.|+.++.+
T Consensus       267 v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~  346 (529)
T 3tpo_A          267 VLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTN  346 (529)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTC
T ss_pred             HHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcC
Confidence            99999999999998777788888899999999999999999999999999999999888999999999999999999999


Q ss_pred             CChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC--chhhhHHhhCChHHHH
Q 005282          289 SCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDT--HNQAGIAQDGGILPLL  366 (704)
Q Consensus       289 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~~~~~~L~  366 (704)
                      +++.++..|+|+|+|++.+++.....+.+.|+++.|+.++.+++.+++..|+++|+|++.+.  +....+++.|++++|+
T Consensus       347 ~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~  426 (529)
T 3tpo_A          347 PKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLM  426 (529)
T ss_dssp             SSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHH
Confidence            99999999999999999888888888999999999999999999999999999999999643  4456688999999999


Q ss_pred             HhhcCCChhHHHHHHHHHHHcccC------C-chhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHH
Q 005282          367 KLLDSKNGSLQHNAAFALYGLADN------E-DNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHL  439 (704)
Q Consensus       367 ~ll~~~~~~v~~~a~~~L~~l~~~------~-~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  439 (704)
                      ++|.+.+++++..++.+|.++...      . .....+.+.||++.+                                 
T Consensus       427 ~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~i---------------------------------  473 (529)
T 3tpo_A          427 NLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKI---------------------------------  473 (529)
T ss_dssp             HGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHH---------------------------------
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHH---------------------------------
Confidence            999999999999999999998631      1 112345556665553                                 


Q ss_pred             HHHHhhccHHHHHHHHHHHHhc
Q 005282          440 LYLLRVADRAVKRRVTLALAHL  461 (704)
Q Consensus       440 ~~ll~~~~~~v~~~a~~~L~~l  461 (704)
                      -.+..+++.++...|...|-..
T Consensus       474 e~Lq~~~n~~i~~~A~~iie~y  495 (529)
T 3tpo_A          474 EALQRHENESVYKASLNLIEKY  495 (529)
T ss_dssp             TGGGGCSSHHHHHHHHHHHHHH
T ss_pred             HHHHcCCCHHHHHHHHHHHHHH
Confidence            3455678889999998888665

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=100.00  E-value=2.6e-34  Score=321.10  Aligned_cols=421  Identities=19%  Similarity=0.218  Sum_probs=359.3

Q ss_pred             hHHHHHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHHHHHc
Q 005282           64 DRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQIIVDT  142 (704)
Q Consensus        64 ~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~~~~  142 (704)
                      +...+..|+.+|.+++.+++.+..+.+.|+++.|+++|++++.          .++..|+++|.+++ ..+..+..+.+.
T Consensus        70 ~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~----------~v~~~A~~aL~nL~~~~~~~~~~v~~~  139 (644)
T 2z6h_A           70 DVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVD----------SVLFYAITTLHNLLLHQEGAKMAVRLA  139 (644)
T ss_dssp             CHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTCSSH----------HHHHHHHHHHHHHHHHSTTHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHhCCCH----------HHHHHHHHHHHHHHhCcchhHHHHHHC
Confidence            4557889999999999998899999999999999999998765          99999999999999 667888889999


Q ss_pred             CCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCC-HHHHHHHHHHHHHhc
Q 005282          143 GALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVD-VKVQRAAAGALRTLA  221 (704)
Q Consensus       143 g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~~~~~a~~~L~~l~  221 (704)
                      |+++.|+.+|++.+.        .++..++.+|.+++..+++.+..+...|+++.|+.++++.+ ..++..++.+|++++
T Consensus       140 g~i~~Lv~lL~~~~~--------~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs  211 (644)
T 2z6h_A          140 GGLQKMVALLNKTNV--------KFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLS  211 (644)
T ss_dssp             THHHHHHHGGGCCCH--------HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred             CChHHHHHHHCcCCH--------HHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHh
Confidence            999999999997643        78888889999999878889999999999999999999654 678899999999999


Q ss_pred             cCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHH
Q 005282          222 FKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLL  301 (704)
Q Consensus       222 ~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L  301 (704)
                      . ++.++..+++.|+++.|+.++.+++..++..++++|.+++...+..   ....++++.|+.++.+.+++++..++++|
T Consensus       212 ~-~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~---~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL  287 (644)
T 2z6h_A          212 V-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGIL  287 (644)
T ss_dssp             T-CTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC---CSCHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred             c-CcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            6 7889999999999999999999999999999999999999764331   11236799999999999999999999999


Q ss_pred             HHHhccCCcchHHHHhcCChHHHHHhhCCC--CHHHHHHHHHHHHHhhcCCc----hhhhHHhhCChHHHHHhhcCCC-h
Q 005282          302 GQFAAADSNSKVHIVQRGAVRPLIEMLQSP--DSQLKEMSAFALGRLAQDTH----NQAGIAQDGGILPLLKLLDSKN-G  374 (704)
Q Consensus       302 ~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~----~~~~~~~~~~~~~L~~ll~~~~-~  374 (704)
                      .+++..++.++..+.+.|+++.|+.++.+.  .+.++..|+++|+||+....    .+..+...|+++.|+++|.+.+ +
T Consensus       288 ~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~  367 (644)
T 2z6h_A          288 SNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHW  367 (644)
T ss_dssp             HHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCH
T ss_pred             HHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCch
Confidence            999987778888899999999999999863  37999999999999997532    3455778899999999998865 6


Q ss_pred             hHHHHHHHHHHHcccCCchhhHHHhhCCccccccccccccc-----------------------chHHHHHHHHHH----
Q 005282          375 SLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQP-----------------------TKDCVARTLKRL----  427 (704)
Q Consensus       375 ~v~~~a~~~L~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~-----------------------~~~~~~~~~~~~----  427 (704)
                      .+++.++++|.|++.+++++..+.+.|+++.|++.......                       ........+..+    
T Consensus       368 ~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~  447 (644)
T 2z6h_A          368 PLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDV  447 (644)
T ss_dssp             HHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCH
Confidence            99999999999999988888999999999988753322100                       011111222211    


Q ss_pred             ---HHHhhcchhHHHHHHHhhccHHHHHHHHHHHHhccCCCccceeeecCCcHHHHHHHHhhcchhhhhhHHHHHHHHhh
Q 005282          428 ---EEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPDDCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLAT  504 (704)
Q Consensus       428 ---~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~  504 (704)
                         ......+.++.|+.++.++++.++..|+++|.+++..++.+..+.+.||++.|.+++.+++++++..|+++|.+|+.
T Consensus       448 ~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~  527 (644)
T 2z6h_A          448 HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSE  527 (644)
T ss_dssp             HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence               12225678999999999999999999999999998877788888899999999999999999999999999999987


Q ss_pred             hc
Q 005282          505 KA  506 (704)
Q Consensus       505 ~~  506 (704)
                      +.
T Consensus       528 ~~  529 (644)
T 2z6h_A          528 DK  529 (644)
T ss_dssp             TS
T ss_pred             cC
Confidence            65

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=100.00  E-value=8.6e-35  Score=303.08  Aligned_cols=369  Identities=21%  Similarity=0.228  Sum_probs=299.1

Q ss_pred             CChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCC----CCcchhHH
Q 005282           92 GAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGG----NSRALSGV  167 (704)
Q Consensus        92 g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~----~~~~~~~~  167 (704)
                      ..++.|+..+.+.+.          +   ...+.|..+..+++.|..+++.|++|.|+++|+..+.+.    ....++++
T Consensus        32 ~~~~~l~~~~~~~~~----------~---~~~~~ll~~~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~   98 (458)
T 3nmz_A           32 EMVYSLLSMLGTHDK----------D---DMSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEA   98 (458)
T ss_dssp             -------------CC----------H---HHHHHHHHHHSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHH
T ss_pred             HHHHHHHHHhcCCCH----------H---HHHHHHHHHHcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHH
Confidence            346778888877654          3   378889999999999999999999999999999754310    01123499


Q ss_pred             HHHHHHHHHHhhhcChhhhhhhhccCCc----------HHHHHHhcCCC--HH-----HHH-------HHHHHHHHhccC
Q 005282          168 IRRAADAITNLAHENANIKTRVRVEDGI----------PPLVELLKFVD--VK-----VQR-------AAAGALRTLAFK  223 (704)
Q Consensus       168 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i----------~~L~~ll~~~~--~~-----~~~-------~a~~~L~~l~~~  223 (704)
                      +..|+|+|.|++.+.++......+.+++          +.+++++.+.+  .+     +++       .|+|+|.|++. 
T Consensus        99 ~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~-  177 (458)
T 3nmz_A           99 RARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSF-  177 (458)
T ss_dssp             HHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcC-
Confidence            9999999999998888887777777777          55666676542  12     444       89999999986 


Q ss_pred             CchhhHHhHhcCChHHHHHhhcC-----------CCHHHHHHHHHHHHHHhcCChhhHHHHHH-cCCHHHHHHHhcCCCh
Q 005282          224 NDENKKLIVECNALPTLVLMLRS-----------EDASVHFEAVGVIGNLVHSSPSIKKEVIL-AGALQPVIGLLSSSCS  291 (704)
Q Consensus       224 ~~~~~~~~~~~~~i~~L~~lL~~-----------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~ll~~~~~  291 (704)
                      ++++|..+.+.|+++.|+.+|..           .++.+++.|+|+|.||+.+++..+..+.. .|+++.|+.+|.+++.
T Consensus       178 ~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~  257 (458)
T 3nmz_A          178 DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESE  257 (458)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCH
T ss_pred             CHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCH
Confidence            69999999999999999999952           34678999999999999887766666655 4569999999999999


Q ss_pred             hHHHHHHHHHHHHhcc-CCcchHHHHhcCChHHHHHhh-CCCCHHHHHHHHHHHHHhhc-CCchhhhHH-hhCChHHHHH
Q 005282          292 ESKREAALLLGQFAAA-DSNSKVHIVQRGAVRPLIEML-QSPDSQLKEMSAFALGRLAQ-DTHNQAGIA-QDGGILPLLK  367 (704)
Q Consensus       292 ~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~-~~~~~~~L~~  367 (704)
                      +++..|+++|+|++.. ++.++..+.+.|+++.|+.+| .+++..+++.|+.+|+||+. ..+++..+. ..|+++.|++
T Consensus       258 ~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~  337 (458)
T 3nmz_A          258 DLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVG  337 (458)
T ss_dssp             HHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHH
Confidence            9999999999999874 456788899999999999975 56788999999999999998 667788887 6899999999


Q ss_pred             hhcCCCh----hHHHHHHHHHHHccc----CCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHH
Q 005282          368 LLDSKNG----SLQHNAAFALYGLAD----NEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHL  439 (704)
Q Consensus       368 ll~~~~~----~v~~~a~~~L~~l~~----~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  439 (704)
                      ++.+++.    ++++.|+++|.|++.    +++++..+.+.|+++                                 .|
T Consensus       338 LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~---------------------------------~L  384 (458)
T 3nmz_A          338 TLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQ---------------------------------TL  384 (458)
T ss_dssp             HTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHH---------------------------------HH
T ss_pred             HhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHH---------------------------------HH
Confidence            9987654    499999999999984    788888888877654                                 57


Q ss_pred             HHHHhhccHHHHHHHHHHHHhcc-CCCccceeeecCCcHHHHHHHHhhcchhhhhhHHHHHHHHhhhcC
Q 005282          440 LYLLRVADRAVKRRVTLALAHLC-APDDCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLATKAT  507 (704)
Q Consensus       440 ~~ll~~~~~~v~~~a~~~L~~l~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~  507 (704)
                      +.++.+++..+++.|+++|.|++ .+++++..+.+.|+++.|+.++.++++.++..|+++|.+|+.+.+
T Consensus       385 v~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p  453 (458)
T 3nmz_A          385 LQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP  453 (458)
T ss_dssp             HHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCS
T ss_pred             HHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence            77888999999999999999997 577888888999999999999999999999999999999998653

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=100.00  E-value=3e-34  Score=305.34  Aligned_cols=360  Identities=19%  Similarity=0.245  Sum_probs=302.5

Q ss_pred             ChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHH
Q 005282           93 AVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRA  171 (704)
Q Consensus        93 ~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a  171 (704)
                      .+|.|+.+|++++.          +++..|+++|.+++ .++..+..+.+.|++|.|+++|++++.        +++..|
T Consensus         3 ~l~~lv~~L~s~~~----------~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~--------~~~~~A   64 (457)
T 1xm9_A            3 TIPKAVQYLSSQDE----------KYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQ--------NVQQAA   64 (457)
T ss_dssp             CHHHHHHHHHSSCT----------HHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCH--------HHHHHH
T ss_pred             CHHHHHHHHCCCCH----------HHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCH--------HHHHHH
Confidence            47999999999865          99999999999999 777788899999999999999997654        899999


Q ss_pred             HHHHHHhhhcChhhhhhhhccCCcHHHHHHhc-CCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhh------
Q 005282          172 ADAITNLAHENANIKTRVRVEDGIPPLVELLK-FVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLML------  244 (704)
Q Consensus       172 ~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL------  244 (704)
                      +++|.|++.++++.+..+.+.|++|.|+++|+ ++++++++.++++|++|+.+ ++++..+++ |+++.|++++      
T Consensus        65 ~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~  142 (457)
T 1xm9_A           65 AGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSG  142 (457)
T ss_dssp             HHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHT
T ss_pred             HHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccc
Confidence            99999999877999999999999999999999 88999999999999999975 888998888 9999999999      


Q ss_pred             --cC--------CCHHHHHHHHHHHHHHhcCChhhHHHHHHc-CCHHHHHHHhcC------CChhHHHHHHHHHHHHhcc
Q 005282          245 --RS--------EDASVHFEAVGVIGNLVHSSPSIKKEVILA-GALQPVIGLLSS------SCSESKREAALLLGQFAAA  307 (704)
Q Consensus       245 --~~--------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~l~~L~~ll~~------~~~~~~~~a~~~L~~l~~~  307 (704)
                        .+        .++.+++.|+|+|.|++.+ ++.+..+.+. |+++.|+.++.+      .+..+...++.+|.|++..
T Consensus       143 ~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~  221 (457)
T 1xm9_A          143 WCDGNSNMSREVVDPEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYR  221 (457)
T ss_dssp             CC---------CCCHHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTT
T ss_pred             cccCccchhcccccHHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccc
Confidence              32        3567788999999999977 7888888887 999999999975      4566788899999988621


Q ss_pred             --------------------------------------------------CCcchHHHHhcCChHHHHHhhCC-CCHHHH
Q 005282          308 --------------------------------------------------DSNSKVHIVQRGAVRPLIEMLQS-PDSQLK  336 (704)
Q Consensus       308 --------------------------------------------------~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~  336 (704)
                                                                        .+.....+.+.|+++.|+.+|.+ .++.++
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~  301 (457)
T 1xm9_A          222 LDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATL  301 (457)
T ss_dssp             HHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHH
T ss_pred             hhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHH
Confidence                                                              11222344556778999999975 568999


Q ss_pred             HHHHHHHHHhhcCCchh------hhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcccCCchhhHHHhhCCcccccccc
Q 005282          337 EMSAFALGRLAQDTHNQ------AGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGE  410 (704)
Q Consensus       337 ~~a~~~L~~l~~~~~~~------~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~g~i~~l~~~~  410 (704)
                      +.|+|+|+|++.+....      ..+.+.|+++.|+++|.+++.++++.|+++|.|++.++++...+ ..|++       
T Consensus       302 e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i-~~~~i-------  373 (457)
T 1xm9_A          302 EACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVM-GNQVF-------  373 (457)
T ss_dssp             HHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHH-HHHTH-------
T ss_pred             HHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHH-HHhhh-------
Confidence            99999999999875432      22335799999999999999999999999999999877665544 33444       


Q ss_pred             cccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhcc------HHHHHHHHHHHHhccC-CCccceeeecCCcHHHHHHH
Q 005282          411 FTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVAD------RAVKRRVTLALAHLCA-PDDCKTIFIDNNGLELLLGL  483 (704)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~------~~v~~~a~~~L~~l~~-~~~~~~~l~~~~~i~~L~~l  483 (704)
                                                ++|+.++..++      +++...++++|.++.. +++....+.+.||++.|+++
T Consensus       374 --------------------------~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L  427 (457)
T 1xm9_A          374 --------------------------PEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINL  427 (457)
T ss_dssp             --------------------------HHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHH
T ss_pred             --------------------------HHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHH
Confidence                                      45666666543      4788899999999954 66677778889999999999


Q ss_pred             Hhhc-chhhhhhHHHHHHHHhhhcC
Q 005282          484 LEST-SVKQREESSVALYKLATKAT  507 (704)
Q Consensus       484 l~~~-~~~~~~~a~~~L~~L~~~~~  507 (704)
                      +.++ ++.+++.|.+.|.++..+.+
T Consensus       428 ~~~~~~~~i~~~A~~~L~~~~~~~~  452 (457)
T 1xm9_A          428 CRSSASPKAAEAARLLLSDMWSSKE  452 (457)
T ss_dssp             HHCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred             HcCCCcHHHHHHHHHHHHHHHcchh
Confidence            9998 99999999999999887653

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=100.00  E-value=6.6e-34  Score=302.51  Aligned_cols=371  Identities=18%  Similarity=0.238  Sum_probs=304.1

Q ss_pred             HHHHHHHHhhhccCCchhhHHHHHHHHHHHHHhhc-ChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHH
Q 005282           46 DIRAQIDILNSKFSSDETDRAAAKTASHALVEFAK-NEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAF  124 (704)
Q Consensus        46 ~~~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~  124 (704)
                      .++.++..|..      .+..++.+|++.|.+++. +++++..+++.|+||.|+++|.+++.          +++..|++
T Consensus        49 ~i~~LV~~L~s------~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~----------~vq~~Aa~  112 (584)
T 3l6x_A           49 ELPEVIAMLGF------RLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKK----------EVHLGACG  112 (584)
T ss_dssp             CHHHHHHHTTC------SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSH----------HHHHHHHH
T ss_pred             cHHHHHHHHCC------CCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCH----------HHHHHHHH
Confidence            36666666532      334578899999999997 78999999999999999999999865          99999999


Q ss_pred             HHHhhcC--ChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHh
Q 005282          125 ALGLLAV--KPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELL  202 (704)
Q Consensus       125 ~L~~l~~--~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll  202 (704)
                      +|.||+.  +++++..+.+.|+++.|+.+|++..+       .++++.++++|++|+. ++..+..+.. ++++.|++++
T Consensus       113 AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~-------~~~~e~aa~aL~nLS~-~~~~k~~I~~-~alp~Lv~LL  183 (584)
T 3l6x_A          113 ALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARD-------MDLTEVITGTLWNLSS-HDSIKMEIVD-HALHALTDEV  183 (584)
T ss_dssp             HHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCS-------HHHHHHHHHHHHHHTT-SGGGHHHHHH-HTHHHHHHHT
T ss_pred             HHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCC-------HHHHHHHHHHHHHHhC-CchhhHHHHh-ccHHHHHHHH
Confidence            9999994  59999999999999999999997533       2889999999999997 6778888885 6799999987


Q ss_pred             c------------------CCCHHHHHHHHHHHHHhccCCchhhHHhHhc-CChHHHHHhhcC------CCHHHHHHHHH
Q 005282          203 K------------------FVDVKVQRAAAGALRTLAFKNDENKKLIVEC-NALPTLVLMLRS------EDASVHFEAVG  257 (704)
Q Consensus       203 ~------------------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-~~i~~L~~lL~~------~~~~v~~~a~~  257 (704)
                      .                  ..++.+++.|+++|.||+..+++.+..+.+. |+++.|+.++++      .+...++.|++
T Consensus       184 ~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~  263 (584)
T 3l6x_A          184 IIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVC  263 (584)
T ss_dssp             HHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHH
T ss_pred             hcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHH
Confidence            2                  2367999999999999998777778888875 456799999874      56789999999


Q ss_pred             HHHHHhcCChh-------------------------hHHHHHHcCCHHHHHHHhc-CCChhHHHHHHHHHHHHhccCC--
Q 005282          258 VIGNLVHSSPS-------------------------IKKEVILAGALQPVIGLLS-SSCSESKREAALLLGQFAAADS--  309 (704)
Q Consensus       258 ~L~~l~~~~~~-------------------------~~~~~~~~~~l~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~--  309 (704)
                      +|.||+.....                         ....+...++++.++.+|. +.++.+++.|+++|.|++.+..  
T Consensus       264 aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~  343 (584)
T 3l6x_A          264 LLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTY  343 (584)
T ss_dssp             HHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHH
T ss_pred             HHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccc
Confidence            99999854210                         0111222345678888995 5678899999999999987542  


Q ss_pred             --cchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCC--------ChhHHHH
Q 005282          310 --NSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSK--------NGSLQHN  379 (704)
Q Consensus       310 --~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~--------~~~v~~~  379 (704)
                        ..+..+.+.++++.|+.+|.+++..+++.|+++|+||+.+..++..+ ..|+++.|+++|.++        +.++...
T Consensus       344 ~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I-~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~  422 (584)
T 3l6x_A          344 GRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELI-GKHAIPNLVKNLPGGQQNSSWNFSEDTVIS  422 (584)
T ss_dssp             HHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHH-HHHHHHHHHHTSSSSSCSGGGTCCHHHHHH
T ss_pred             cHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHH-HhCCHHHHHHHhcCCcccccccchHHHHHH
Confidence              22334556789999999999999999999999999999998887766 679999999999775        4678999


Q ss_pred             HHHHHHHcc-cCCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhc--cHHHHHHHHH
Q 005282          380 AAFALYGLA-DNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVA--DRAVKRRVTL  456 (704)
Q Consensus       380 a~~~L~~l~-~~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~--~~~v~~~a~~  456 (704)
                      |+++|.|++ .++++.+.+.+.|+++.                                 |+.+++++  .+.+++.|++
T Consensus       423 a~~tL~NL~a~~~~~~~~I~~~g~I~~---------------------------------Lv~LL~s~~~~~~v~k~Aa~  469 (584)
T 3l6x_A          423 ILNTINEVIAENLEAAKKLRETQGIEK---------------------------------LVLINKSGNRSEKEVRAAAL  469 (584)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTHHHH---------------------------------HHHHHTCSSSCHHHHHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHCCChHH---------------------------------HHHHHhCCCCChHHHHHHHH
Confidence            999999997 58889999999888655                                 66788775  7899999999


Q ss_pred             HHHhccCCCccceeeecCC
Q 005282          457 ALAHLCAPDDCKTIFIDNN  475 (704)
Q Consensus       457 ~L~~l~~~~~~~~~l~~~~  475 (704)
                      +|+++..+++.+..+.+.|
T Consensus       470 vL~nl~~~~elr~~~kk~G  488 (584)
T 3l6x_A          470 VLQTIWGYKELRKPLEKEG  488 (584)
T ss_dssp             HHHHHHTSHHHHHHHHTTT
T ss_pred             HHHHHHcCHHHHHHHHHcC
Confidence            9999988877777665543

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=100.00  E-value=2.2e-33  Score=301.21  Aligned_cols=390  Identities=19%  Similarity=0.243  Sum_probs=333.1

Q ss_pred             hHHHHHHHHHHHHHhhc---ChhHHHHHHhC-CChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHH
Q 005282           64 DRAAAKTASHALVEFAK---NEEIVSLIVDN-GAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQI  138 (704)
Q Consensus        64 ~~~~~~~a~~~L~~l~~---~~~~~~~l~~~-g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~  138 (704)
                      +..++..|+..|..+..   ++.. +.+++. |+++.|+++|++.+         +++++..|+++|.+++ .+++....
T Consensus        33 ~~~~r~~A~~~L~~l~~~~~~~~~-~~~~~~~~~i~~L~~~L~~~~---------~~~v~~~a~~~L~~l~~~~~~~~~~  102 (450)
T 2jdq_A           33 SPEQQLSATQKFRKLLSKEPNPPI-DEVISTPGVVARFVEFLKRKE---------NCTLQFESAWVLTNIASGNSLQTRI  102 (450)
T ss_dssp             CHHHHHHHHHHHHHHHHSSSSCCH-HHHHTSTTHHHHHHHHHTCTT---------CHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhcCCCCCcH-HHHHHcCCcHHHHHHHHCCCC---------CHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            44578889999988743   3444 446677 99999999999883         2489999999999999 67888888


Q ss_pred             HHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcC-CCHHHHHHHHHHH
Q 005282          139 IVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKF-VDVKVQRAAAGAL  217 (704)
Q Consensus       139 ~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L  217 (704)
                      +.+.|+++.|+++|++++.        +++..++++|++++.+++..+..+...|+++.|+.++.+ .++.++..++++|
T Consensus       103 ~~~~~~i~~L~~lL~~~~~--------~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L  174 (450)
T 2jdq_A          103 VIQAGAVPIFIELLSSEFE--------DVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWAL  174 (450)
T ss_dssp             HHHTTHHHHHHHHTTCSCH--------HHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHcCCCH--------HHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            8999999999999997654        999999999999998888888889999999999999995 7899999999999


Q ss_pred             HHhccCC-chhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHH
Q 005282          218 RTLAFKN-DENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKRE  296 (704)
Q Consensus       218 ~~l~~~~-~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~  296 (704)
                      ++++.+. +.....+. .++++.|+.++.++++.++..++++|.+++...+.....+...|+++.|+.++.++++.++..
T Consensus       175 ~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~  253 (450)
T 2jdq_A          175 SNLCRGKSPPPEFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSP  253 (450)
T ss_dssp             HHHHCCSSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHH
T ss_pred             HHHhCCCCCCCCHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHH
Confidence            9999754 44333333 789999999999999999999999999999877777778888999999999999999999999


Q ss_pred             HHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCc-hhhhHHhhCChHHHHHhhcCCChh
Q 005282          297 AALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTH-NQAGIAQDGGILPLLKLLDSKNGS  375 (704)
Q Consensus       297 a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~~~L~~ll~~~~~~  375 (704)
                      ++++|++++.+.+.....+.+.|+++.|+.++.++++.++..|+++|++++.+.. ....+.+.|+++.|++++.++++.
T Consensus       254 a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~  333 (450)
T 2jdq_A          254 ALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFR  333 (450)
T ss_dssp             HHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHH
T ss_pred             HHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHH
Confidence            9999999998766666778888999999999999999999999999999997654 445567789999999999999999


Q ss_pred             HHHHHHHHHHHccc--CCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHH
Q 005282          376 LQHNAAFALYGLAD--NEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRR  453 (704)
Q Consensus       376 v~~~a~~~L~~l~~--~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~  453 (704)
                      ++..|+++|.+++.  +++....+++.|+                                 ++.|+.++.++++.++..
T Consensus       334 v~~~a~~~L~~l~~~~~~~~~~~l~~~~~---------------------------------i~~L~~ll~~~~~~v~~~  380 (450)
T 2jdq_A          334 TRKEAAWAITNATSGGSAEQIKYLVELGC---------------------------------IKPLCDLLTVMDSKIVQV  380 (450)
T ss_dssp             HHHHHHHHHHHHHHHCCHHHHHHHHHHTC---------------------------------HHHHHHGGGSSCHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHCCC---------------------------------HHHHHHHhcCCCHHHHHH
Confidence            99999999999985  4566666666555                                 445777888889999999


Q ss_pred             HHHHHHhccCCC------------ccceeeecCCcHHHHHHHHhhcchhhhhhHHHHHHHHhhh
Q 005282          454 VTLALAHLCAPD------------DCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLATK  505 (704)
Q Consensus       454 a~~~L~~l~~~~------------~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~  505 (704)
                      |+++|.+++...            .....+.+.||++.|..+..+++++++..|..+|.++...
T Consensus       381 a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~  444 (450)
T 2jdq_A          381 ALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGT  444 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCc
Confidence            999999995422            1234566779999999999999999999999999988753

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=100.00  E-value=5e-34  Score=323.17  Aligned_cols=435  Identities=19%  Similarity=0.228  Sum_probs=364.9

Q ss_pred             HHHHhhhccCCchhhHHHHHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhh
Q 005282           50 QIDILNSKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLL  129 (704)
Q Consensus        50 l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l  129 (704)
                      .++.|...+..+ .+...+..|+.+|.+++.+++++..+.+.|+++.|+++|++.+.          .++..|+++|.+|
T Consensus       193 ~i~~Lv~~L~~~-~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~----------~v~~~A~~aL~nL  261 (780)
T 2z6g_A          193 MVSAIVRTMQNT-NDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVD----------SVLFHAITTLHNL  261 (780)
T ss_dssp             HHHHHHHHHHHC-CCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCH----------HHHHHHHHHHHHH
T ss_pred             hHHHHHHHHcCC-CCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCH----------HHHHHHHHHHHHH
Confidence            444444444322 25567899999999999988888899999999999999998865          9999999999999


Q ss_pred             c-CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCC-H
Q 005282          130 A-VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVD-V  207 (704)
Q Consensus       130 ~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~-~  207 (704)
                      + ..++.+..+.+.|+++.|+.+|.+.+.        .++..++.+|.+++..+++.+..+...|+++.|+.++++.+ .
T Consensus       262 a~~~~~~~~~v~~~g~v~~Lv~lL~~~~~--------~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~  333 (780)
T 2z6g_A          262 LLHQEGAKMAVRLAGGLQKMVALLNKTNV--------KFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYE  333 (780)
T ss_dssp             HHHSTTHHHHHHHTTHHHHHHHGGGCCCH--------HHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCH
T ss_pred             hCCChhhHHHHHHcCCHHHHHHHHhcCCH--------HHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHH
Confidence            9 667888899999999999999987543        88999999999999878889999999999999999999765 4


Q ss_pred             HHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhc
Q 005282          208 KVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLS  287 (704)
Q Consensus       208 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~  287 (704)
                      ..+..++.+|++++. .+.++..+++.|+++.|+.++.+.+..++..++++|.+++...+..   ....++++.|+.++.
T Consensus       334 ~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~~Lv~lL~  409 (780)
T 2z6g_A          334 KLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLG  409 (780)
T ss_dssp             HHHHHHHHHHHHHHT-STTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhhc-ChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhhhhHHHHHHHHHc
Confidence            566788999999996 7788999999999999999999999999999999999999765331   112467899999999


Q ss_pred             CCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCC-CC-HHHHHHHHHHHHHhhcCCch----hhhHHhhCC
Q 005282          288 SSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQS-PD-SQLKEMSAFALGRLAQDTHN----QAGIAQDGG  361 (704)
Q Consensus       288 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~-~~v~~~a~~~L~~l~~~~~~----~~~~~~~~~  361 (704)
                      +.++.++..|+++|++++..++..+..+.+.|+++.|+.++.+ ++ ..++..|+++|+||+.....    +..+...|+
T Consensus       410 ~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~  489 (780)
T 2z6g_A          410 SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYG  489 (780)
T ss_dssp             CSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTC
T ss_pred             CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCC
Confidence            9999999999999999998777788889999999999999975 33 48999999999999875432    456788899


Q ss_pred             hHHHHHhhcCCCh-hHHHHHHHHHHHcccCCchhhHHHhhCCccccccccccccc-----------------------ch
Q 005282          362 ILPLLKLLDSKNG-SLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQP-----------------------TK  417 (704)
Q Consensus       362 ~~~L~~ll~~~~~-~v~~~a~~~L~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~-----------------------~~  417 (704)
                      ++.|+++|.+.+. .++..++++|+|++.+++++..+.+.|+++.|++.......                       ..
T Consensus       490 l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~  569 (780)
T 2z6g_A          490 LPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIV  569 (780)
T ss_dssp             HHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHH
T ss_pred             HHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHH
Confidence            9999999988765 99999999999999988888889999998888653321100                       01


Q ss_pred             HHHHHHHHHHH-------HHhhcchhHHHHHHHhhccHHHHHHHHHHHHhccCCCccceeeecCCcHHHHHHHHhhcchh
Q 005282          418 DCVARTLKRLE-------EKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPDDCKTIFIDNNGLELLLGLLESTSVK  490 (704)
Q Consensus       418 ~~~~~~~~~~~-------~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~~  490 (704)
                      ...+..+..+.       .....+.++.|+.++.++++.++..|+.+|.+++.++..+..+.+.||++.|++++.+++++
T Consensus       570 ~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~i~~L~~Ll~~~~~~  649 (780)
T 2z6g_A          570 EACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEG  649 (780)
T ss_dssp             HHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHGGGCSCHH
T ss_pred             HHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHcCCCHH
Confidence            11222222221       12256789999999999999999999999999988888888889999999999999999999


Q ss_pred             hhhhHHHHHHHHhhhcC
Q 005282          491 QREESSVALYKLATKAT  507 (704)
Q Consensus       491 ~~~~a~~~L~~L~~~~~  507 (704)
                      +|..|+++|.+++.+.+
T Consensus       650 Vr~~A~~aL~~l~~~~~  666 (780)
T 2z6g_A          650 VATYAAAVLFRMSEDKP  666 (780)
T ss_dssp             HHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHcCCh
Confidence            99999999999998764

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=100.00  E-value=2.8e-33  Score=307.03  Aligned_cols=435  Identities=21%  Similarity=0.252  Sum_probs=354.4

Q ss_pred             HHHHHHHHHHhhhccCCchhhHHHHHHHHHHHHHhhcChhHHHHHHhC-CChHHHHhhccCCCcCCCCCCCCchHHHHHH
Q 005282           44 VQDIRAQIDILNSKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDN-GAVPALVEHLQTPPQLTNAQIPYEHEVEKEC  122 (704)
Q Consensus        44 ~~~~~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~-g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a  122 (704)
                      ...++.+++.|..      ++..++..|+..|.+++.+++.+..+... |+++.|+++|.+.+         |++++..|
T Consensus        16 ~~~i~~Lv~lL~~------~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~---------~~~~~~~a   80 (529)
T 1jdh_A           16 TRAIPELTKLLND------EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTN---------DVETARCT   80 (529)
T ss_dssp             -CHHHHHHHHHTC------SCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCC---------CHHHHHHH
T ss_pred             HhhHHHHHHHhCC------CCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCC---------CHHHHHHH
Confidence            3456666665532      45568899999999999988887777765 89999999997653         24899999


Q ss_pred             HHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHh
Q 005282          123 AFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELL  202 (704)
Q Consensus       123 ~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll  202 (704)
                      +++|.+++.+++++..+.+.|+++.|+.+|++++.        .++..++++|.+++.+++..+..+.+.|+++.|+.++
T Consensus        81 ~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~~~--------~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll  152 (529)
T 1jdh_A           81 AGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVD--------SVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL  152 (529)
T ss_dssp             HHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCH--------HHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGG
T ss_pred             HHHHHHHHcCchhHHHHHHcCCHHHHHHHHcCCCH--------HHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHH
Confidence            99999999888899999999999999999988654        8999999999999988777888888999999999999


Q ss_pred             cCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCC-HHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHH
Q 005282          203 KFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSED-ASVHFEAVGVIGNLVHSSPSIKKEVILAGALQP  281 (704)
Q Consensus       203 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~  281 (704)
                      .++++.++..++.+|.+++.++++.+..+.+.|+++.|+.++++++ ...+..++.+|.+++.. +..+..+.+.|+++.
T Consensus       153 ~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~~~~  231 (529)
T 1jdh_A          153 NKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQA  231 (529)
T ss_dssp             GCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-TTHHHHHHHTTHHHH
T ss_pred             hcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHH
Confidence            9999999999999999999878999999999999999999998654 56677789999999965 677888889999999


Q ss_pred             HHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC-chhhhHHhhC
Q 005282          282 VIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDT-HNQAGIAQDG  360 (704)
Q Consensus       282 L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~  360 (704)
                      |+.++.+++++++..++++|.+++...+...   ...++++.|+.++.+++++++..++++|++++.+. +++..+.+.|
T Consensus       232 L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~  308 (529)
T 1jdh_A          232 LGLHLTDPSQRLVQNCLWTLRNLSDAATKQE---GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVG  308 (529)
T ss_dssp             HHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS---CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTT
T ss_pred             HHHHHhCCChHHHHHHHHHHHHHhcCChhhH---HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcC
Confidence            9999999999999999999999997543321   22478999999999999999999999999999875 4777788899


Q ss_pred             ChHHHHHhhcC--CChhHHHHHHHHHHHcccC-Cc---hhhHHHhhCCccccccccccccc--chHHHHHHHHHHH----
Q 005282          361 GILPLLKLLDS--KNGSLQHNAAFALYGLADN-ED---NVADLVRVGGVQKLQDGEFTVQP--TKDCVARTLKRLE----  428 (704)
Q Consensus       361 ~~~~L~~ll~~--~~~~v~~~a~~~L~~l~~~-~~---~~~~l~~~g~i~~l~~~~~~~~~--~~~~~~~~~~~~~----  428 (704)
                      +++.|++++.+  .++.++..++.+|++++.. ++   .+..+.+.|+++.|++.......  .....+..+.++.    
T Consensus       309 ~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~  388 (529)
T 1jdh_A          309 GIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA  388 (529)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG
T ss_pred             ChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChh
Confidence            99999999965  3479999999999999974 33   36688899999988765443321  1222223333332    


Q ss_pred             ---HHhhcchhHHHHHHHhhccHHHHHHHHHHHHh----------------------ccCCCccceeeecCCcHHHHHHH
Q 005282          429 ---EKVHGRVLNHLLYLLRVADRAVKRRVTLALAH----------------------LCAPDDCKTIFIDNNGLELLLGL  483 (704)
Q Consensus       429 ---~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~----------------------l~~~~~~~~~l~~~~~i~~L~~l  483 (704)
                         .....++++.|+.++.++++.++..|+|++.|                      |+.+++++..+.+.|+++.|+.+
T Consensus       389 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~l  468 (529)
T 1jdh_A          389 NHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQL  468 (529)
T ss_dssp             GHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHG
T ss_pred             hhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHH
Confidence               22356789999999998888888766665554                      66666666777889999999999


Q ss_pred             HhhcchhhhhhHHHHHHHHhhh
Q 005282          484 LESTSVKQREESSVALYKLATK  505 (704)
Q Consensus       484 l~~~~~~~~~~a~~~L~~L~~~  505 (704)
                      +.++++.++..|+++|.+|+.+
T Consensus       469 l~~~~~~v~~~a~~~l~~l~~~  490 (529)
T 1jdh_A          469 LYSPIENIQRVAAGVLCELAQD  490 (529)
T ss_dssp             GGCSCHHHHHHHHHHHHHHTTS
T ss_pred             HcCCchHHHHHHHHHHHHHhcC
Confidence            9999999999999999999854

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=100.00  E-value=4e-33  Score=296.69  Aligned_cols=362  Identities=17%  Similarity=0.218  Sum_probs=295.6

Q ss_pred             HHHHHHHhhhccCCchhhHHHHHHHHHHHHHhhc-ChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHH
Q 005282           47 IRAQIDILNSKFSSDETDRAAAKTASHALVEFAK-NEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFA  125 (704)
Q Consensus        47 ~~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~  125 (704)
                      ++.++..|..      .+...+..|+++|.+++. ++..+..+++.|++|.|+++|.+++.          +++..|+++
T Consensus         4 l~~lv~~L~s------~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~----------~~~~~A~~a   67 (457)
T 1xm9_A            4 IPKAVQYLSS------QDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQ----------NVQQAAAGA   67 (457)
T ss_dssp             HHHHHHHHHS------SCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCH----------HHHHHHHHH
T ss_pred             HHHHHHHHCC------CCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCH----------HHHHHHHHH
Confidence            4555655543      233578999999999987 46677788999999999999998754          999999999


Q ss_pred             HHhhc-CChhhHHHHHHcCCcHHHHHHHh-hccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHh-
Q 005282          126 LGLLA-VKPEHQQIIVDTGALPHLVSLLK-QYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELL-  202 (704)
Q Consensus       126 L~~l~-~~~~~~~~~~~~g~l~~L~~lL~-~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll-  202 (704)
                      |.||+ .+++++..+.+.|++|.|+++|+ +.+.        ++++.++|+|+|++.+ +..+..+.+ |++|.|++++ 
T Consensus        68 L~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~--------~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~  137 (457)
T 1xm9_A           68 LRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNA--------EIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVI  137 (457)
T ss_dssp             HHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCH--------HHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTT
T ss_pred             HHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCH--------HHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHh
Confidence            99999 66999999999999999999998 4433        9999999999999986 778888888 9999999999 


Q ss_pred             -------cC--------CCHHHHHHHHHHHHHhccCCchhhHHhHhc-CChHHHHHhhcC------CCHHHHHHHHHHHH
Q 005282          203 -------KF--------VDVKVQRAAAGALRTLAFKNDENKKLIVEC-NALPTLVLMLRS------EDASVHFEAVGVIG  260 (704)
Q Consensus       203 -------~~--------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-~~i~~L~~lL~~------~~~~v~~~a~~~L~  260 (704)
                             .+        .++.+++.|+++|+||+.+ ++++..+.+. |+++.|+.+|++      .+..++..++++|.
T Consensus       138 ~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~  216 (457)
T 1xm9_A          138 IPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLH  216 (457)
T ss_dssp             HHHHTCC---------CCCHHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHH
T ss_pred             ccccccccCccchhcccccHHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHH
Confidence                   32        3567788999999999975 8899999997 999999999985      46678889999999


Q ss_pred             HHhcCC--------------------------------------------------hhhHHHHHHcCCHHHHHHHhcCC-
Q 005282          261 NLVHSS--------------------------------------------------PSIKKEVILAGALQPVIGLLSSS-  289 (704)
Q Consensus       261 ~l~~~~--------------------------------------------------~~~~~~~~~~~~l~~L~~ll~~~-  289 (704)
                      +++...                                                  +...+.+.+.|+++.++.+|.+. 
T Consensus       217 nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~  296 (457)
T 1xm9_A          217 NLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSK  296 (457)
T ss_dssp             HHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCC
T ss_pred             hcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcC
Confidence            986210                                                  11122334556788899999654 


Q ss_pred             ChhHHHHHHHHHHHHhccCCcc-----hHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHH
Q 005282          290 CSESKREAALLLGQFAAADSNS-----KVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILP  364 (704)
Q Consensus       290 ~~~~~~~a~~~L~~l~~~~~~~-----~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~  364 (704)
                      ++.+++.|+++|+|++.++...     +..+.+.|+++.|+.+|.+++.+++..|+++|.|++.+.+.+..+ ..|++++
T Consensus       297 ~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i-~~~~i~~  375 (457)
T 1xm9_A          297 KDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVM-GNQVFPE  375 (457)
T ss_dssp             CHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHH-HHHTHHH
T ss_pred             CHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHH-HHhhhHH
Confidence            6788999999999999765442     223346899999999999999999999999999999987666544 4689999


Q ss_pred             HHHhhcCCCh------hHHHHHHHHHHHccc-CCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhH
Q 005282          365 LLKLLDSKNG------SLQHNAAFALYGLAD-NEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLN  437 (704)
Q Consensus       365 L~~ll~~~~~------~v~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (704)
                      |+++|.++++      ++...++++|.++.. +++....+.+.|+++                                 
T Consensus       376 Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~---------------------------------  422 (457)
T 1xm9_A          376 VTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLN---------------------------------  422 (457)
T ss_dssp             HHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHH---------------------------------
T ss_pred             HHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHH---------------------------------
Confidence            9999987643      688899999999975 667777777766654                                 


Q ss_pred             HHHHHHhhc-cHHHHHHHHHHHHhccCCCccce
Q 005282          438 HLLYLLRVA-DRAVKRRVTLALAHLCAPDDCKT  469 (704)
Q Consensus       438 ~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~  469 (704)
                      .|..++.++ ++.+++.|+++|.++..+.+.|.
T Consensus       423 ~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~l~~  455 (457)
T 1xm9_A          423 NIINLCRSSASPKAAEAARLLLSDMWSSKELQG  455 (457)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHTTSSSTTCSS
T ss_pred             HHHHHHcCCCcHHHHHHHHHHHHHHHcchhhhc
Confidence            577788888 99999999999999987766554

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=100.00  E-value=2.8e-32  Score=298.25  Aligned_cols=364  Identities=18%  Similarity=0.256  Sum_probs=319.2

Q ss_pred             CChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CCh-hhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHH
Q 005282           92 GAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKP-EHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIR  169 (704)
Q Consensus        92 g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~-~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~  169 (704)
                      ..++.|++.|.+++.          +++..|+++|.+++ ..+ .....+++.|+++.|+.+|.+.+.       +.++.
T Consensus        74 ~~l~~lv~~L~s~~~----------~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~-------~~v~~  136 (528)
T 4b8j_A           74 ESLPAMIGGVYSDDN----------NLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDF-------PQLQF  136 (528)
T ss_dssp             -CHHHHHHHHTSSCH----------HHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTC-------HHHHH
T ss_pred             HHHHHHHHHHcCCCH----------HHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCC-------HHHHH
Confidence            458999999988754          89999999999997 443 677889999999999999987652       38999


Q ss_pred             HHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhh-cCCC
Q 005282          170 RAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLML-RSED  248 (704)
Q Consensus       170 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL-~~~~  248 (704)
                      .|+++|.+++.+++..+..+...|+++.|+.++.++++.++..|+++|++++.+.+..+..+...|+++.|+.++ .+.+
T Consensus       137 ~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~  216 (528)
T 4b8j_A          137 EAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTK  216 (528)
T ss_dssp             HHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCC
T ss_pred             HHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCC
Confidence            999999999988888999999999999999999999999999999999999987788899999999999999999 5789


Q ss_pred             HHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhh
Q 005282          249 ASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEML  328 (704)
Q Consensus       249 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll  328 (704)
                      +.++..++++|.+++...+... .....++++.|+.++.++++.++..++++|++++...+.....+.+.|+++.|+.++
T Consensus       217 ~~v~~~a~~~L~~L~~~~~~~~-~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL  295 (528)
T 4b8j_A          217 LSMLRNATWTLSNFCRGKPQPS-FEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL  295 (528)
T ss_dssp             HHHHHHHHHHHHHHHCSSSCCC-HHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHcCCCCCc-HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHH
Confidence            9999999999999998754333 344589999999999999999999999999999976666667788899999999999


Q ss_pred             CCCCHHHHHHHHHHHHHhhcCCch-hhhHHhhCChHHHHHhhcCC-ChhHHHHHHHHHHHccc-CCchhhHHHhhCCccc
Q 005282          329 QSPDSQLKEMSAFALGRLAQDTHN-QAGIAQDGGILPLLKLLDSK-NGSLQHNAAFALYGLAD-NEDNVADLVRVGGVQK  405 (704)
Q Consensus       329 ~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~~~L~~ll~~~-~~~v~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~  405 (704)
                      .++++.++..|+++|++++.+.+. ...+...|+++.|+.++.+. ++.++..|+++|.+++. +++....++..|+   
T Consensus       296 ~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~---  372 (528)
T 4b8j_A          296 LHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGI---  372 (528)
T ss_dssp             TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTC---
T ss_pred             cCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCC---
Confidence            999999999999999999986554 44567789999999999988 99999999999999986 4455566666555   


Q ss_pred             ccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHHHHHHHHhccCC--CccceeeecCCcHHHHHHH
Q 005282          406 LQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAP--DDCKTIFIDNNGLELLLGL  483 (704)
Q Consensus       406 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~~~l~~~~~i~~L~~l  483 (704)
                                                    ++.|+.++.++++.++..|+++|++++..  +.....+.+.|+++.|+.+
T Consensus       373 ------------------------------i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~l  422 (528)
T 4b8j_A          373 ------------------------------IGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDL  422 (528)
T ss_dssp             ------------------------------HHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHG
T ss_pred             ------------------------------HHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHH
Confidence                                          45677888899999999999999999653  5666677788999999999


Q ss_pred             HhhcchhhhhhHHHHHHHHhhhc
Q 005282          484 LESTSVKQREESSVALYKLATKA  506 (704)
Q Consensus       484 l~~~~~~~~~~a~~~L~~L~~~~  506 (704)
                      +.+.++.++..|+.+|.+|....
T Consensus       423 L~~~d~~v~~~al~~L~~l~~~~  445 (528)
T 4b8j_A          423 LICPDIRIVTVCLEGLENILKVG  445 (528)
T ss_dssp             GGCSCHHHHHHHHHHHHHHHHHH
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998765

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.1e-31  Score=299.97  Aligned_cols=433  Identities=21%  Similarity=0.246  Sum_probs=360.5

Q ss_pred             HHHHHHHHhhhccCCchhhHHHHHHHHHHHHHhhcChhHHHHHHhC-CChHHHHhhccCCCcCCCCCCCCchHHHHHHHH
Q 005282           46 DIRAQIDILNSKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDN-GAVPALVEHLQTPPQLTNAQIPYEHEVEKECAF  124 (704)
Q Consensus        46 ~~~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~-g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~  124 (704)
                      .++.+++.|..      ++..++..|+.+|.+++.+...+..++.. |+++.|+++|.+.+         +++++..|+.
T Consensus        15 ~i~~Lv~lL~~------~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~---------~~~~~~~A~~   79 (644)
T 2z6h_A           15 AIPELTKLLND------EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTN---------DVETARCTAG   79 (644)
T ss_dssp             THHHHHHHHTC------SCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCC---------CHHHHHHHHH
T ss_pred             hHHHHHHHHcC------CCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCC---------CHHHHHHHHH
Confidence            46666665532      45568999999999999987777777655 89999999998753         2589999999


Q ss_pred             HHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcC
Q 005282          125 ALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKF  204 (704)
Q Consensus       125 ~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~  204 (704)
                      +|.+++.+++.+..+.+.|+++.|+.+|++.+.        .++..++++|.+++...+..+..+.+.|+++.|+.++++
T Consensus        80 ~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~--------~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~  151 (644)
T 2z6h_A           80 TLHNLSHHREGLLAIFKSGGIPALVKMLGSPVD--------SVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK  151 (644)
T ss_dssp             HHHHHTTSHHHHHHHHTTTHHHHHHHHTTCSSH--------HHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGC
T ss_pred             HHHHHhcChhhHHHHHHcCCHHHHHHHHhCCCH--------HHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCc
Confidence            999999878899999999999999999988654        999999999999998777778888899999999999999


Q ss_pred             CCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCC-HHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHH
Q 005282          205 VDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSED-ASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVI  283 (704)
Q Consensus       205 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~  283 (704)
                      +++.++..++.+|.+++.++++++..+.+.|+++.|+.++++.+ ..++..++.+|.+++.. +..+..+.+.|+++.|+
T Consensus       152 ~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~-~~~~~~l~~~g~l~~L~  230 (644)
T 2z6h_A          152 TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALG  230 (644)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC-TTHHHHHHHTTHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHHHH
Confidence            99999999999999999878899999999999999999998654 67888999999999964 67788899999999999


Q ss_pred             HHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC-chhhhHHhhCCh
Q 005282          284 GLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDT-HNQAGIAQDGGI  362 (704)
Q Consensus       284 ~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~  362 (704)
                      .++.+.+..++..++++|.+++...+..   ....++++.|+.++.+++++++..++++|++|+.++ .++..+.+.|++
T Consensus       231 ~ll~~~~~~~~~~a~~~L~nL~~~~~~~---~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v  307 (644)
T 2z6h_A          231 LHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGI  307 (644)
T ss_dssp             TTTTCSCHHHHHHHHHHHHHHGGGCTTC---CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHH
T ss_pred             HHHhcCCHHHHHHHHHHHHHHhhcchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCH
Confidence            9999999999999999999998754332   122378999999999999999999999999999875 557778888999


Q ss_pred             HHHHHhhcCC--ChhHHHHHHHHHHHcccC-Cc---hhhHHHhhCCcccccccccccc--cchHHHHHHHHHHH------
Q 005282          363 LPLLKLLDSK--NGSLQHNAAFALYGLADN-ED---NVADLVRVGGVQKLQDGEFTVQ--PTKDCVARTLKRLE------  428 (704)
Q Consensus       363 ~~L~~ll~~~--~~~v~~~a~~~L~~l~~~-~~---~~~~l~~~g~i~~l~~~~~~~~--~~~~~~~~~~~~~~------  428 (704)
                      +.|++++.+.  .+.++..|+.+|.+++.. ++   .+..+...|+++.|++......  ......+..+.++.      
T Consensus       308 ~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~  387 (644)
T 2z6h_A          308 EALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH  387 (644)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGH
T ss_pred             HHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHH
Confidence            9999999763  379999999999999963 32   3455778899998876554332  12222333333332      


Q ss_pred             -HHhhcchhHHHHHHHhhcc----------------------HHHHHHHHHHHHhccCCCccceeeecCCcHHHHHHHHh
Q 005282          429 -EKVHGRVLNHLLYLLRVAD----------------------RAVKRRVTLALAHLCAPDDCKTIFIDNNGLELLLGLLE  485 (704)
Q Consensus       429 -~~~~~~~~~~L~~ll~~~~----------------------~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~ll~  485 (704)
                       .....++++.|+.++..++                      .+++..++.+|.+|+.+..++..+.+.|+++.|++++.
T Consensus       388 ~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~  467 (644)
T 2z6h_A          388 APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLY  467 (644)
T ss_dssp             HHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTT
T ss_pred             HHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHc
Confidence             2336688999999998754                      45667788888889888888888889999999999999


Q ss_pred             hcchhhhhhHHHHHHHHhhh
Q 005282          486 STSVKQREESSVALYKLATK  505 (704)
Q Consensus       486 ~~~~~~~~~a~~~L~~L~~~  505 (704)
                      ++++.++..|+++|.+++.+
T Consensus       468 ~~~~~v~~~a~~aL~~l~~~  487 (644)
T 2z6h_A          468 SPIENIQRVAAGVLCELAQD  487 (644)
T ss_dssp             CSCHHHHHHHHHHHHHHHTS
T ss_pred             CCCHHHHHHHHHHHHHHHcC
Confidence            99999999999999999864

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=100.00  E-value=2.2e-31  Score=291.04  Aligned_cols=368  Identities=18%  Similarity=0.260  Sum_probs=319.0

Q ss_pred             hCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-C-ChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHH
Q 005282           90 DNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-V-KPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGV  167 (704)
Q Consensus        90 ~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~-~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~  167 (704)
                      ..+.++.|++.|.+++.          +++..|+++|.++. . .......+++.|+++.|+.+|.+.++       +.+
T Consensus        85 ~~~~i~~lv~~L~s~~~----------~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~-------~~v  147 (530)
T 1wa5_B           85 LQQELPQMTQQLNSDDM----------QEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQP-------EML  147 (530)
T ss_dssp             --CCHHHHHHHHSCSSH----------HHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSC-------HHH
T ss_pred             hHHHHHHHHHHHcCCCH----------HHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCC-------HHH
Confidence            34679999999998755          89999999999997 3 24556778899999999999988632       389


Q ss_pred             HHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCC
Q 005282          168 IRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSE  247 (704)
Q Consensus       168 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~  247 (704)
                      +..|+++|++++.+++..+..+...|+++.|+.+|.++++.++..|+++|++++.+.+..+..+...|+++.|+.++.+.
T Consensus       148 ~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~  227 (530)
T 1wa5_B          148 QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSN  227 (530)
T ss_dssp             HHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSC
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccC
Confidence            99999999999988888888899999999999999999999999999999999987788899999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHh
Q 005282          248 DASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEM  327 (704)
Q Consensus       248 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l  327 (704)
                      ++.++..++++|++++.............++++.|+.++.++++.++..++++|.+++...+.....+.+.|+++.|+.+
T Consensus       228 ~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~l  307 (530)
T 1wa5_B          228 KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVEL  307 (530)
T ss_dssp             CHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHG
T ss_pred             CHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHH
Confidence            99999999999999997652333345568999999999999999999999999999997666777778888999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHhhcCCchh-hhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHccc-CCchhhHHHhhCCccc
Q 005282          328 LQSPDSQLKEMSAFALGRLAQDTHNQ-AGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLAD-NEDNVADLVRVGGVQK  405 (704)
Q Consensus       328 l~~~~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~  405 (704)
                      +.++++.++..|+++|++++.+.+.. ..+...|+++.|+.++.++++.++..|+++|.+++. +++....+++.|+   
T Consensus       308 L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~---  384 (530)
T 1wa5_B          308 LSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANL---  384 (530)
T ss_dssp             GGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTC---
T ss_pred             HCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCC---
Confidence            99999999999999999999876543 446777999999999999999999999999999996 5555666666555   


Q ss_pred             ccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHHHHHHHHhccCC--C--ccceeeecCCcHHHHH
Q 005282          406 LQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAP--D--DCKTIFIDNNGLELLL  481 (704)
Q Consensus       406 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~--~~~~~l~~~~~i~~L~  481 (704)
                                                    ++.|+.++.++++.++..|+++|++++..  +  .....+.+.|+++.|+
T Consensus       385 ------------------------------l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~  434 (530)
T 1wa5_B          385 ------------------------------IPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLC  434 (530)
T ss_dssp             ------------------------------HHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHH
T ss_pred             ------------------------------HHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHH
Confidence                                          45577788889999999999999999652  2  4455567889999999


Q ss_pred             HHHhhcchhhhhhHHHHHHHHhhhcC
Q 005282          482 GLLESTSVKQREESSVALYKLATKAT  507 (704)
Q Consensus       482 ~ll~~~~~~~~~~a~~~L~~L~~~~~  507 (704)
                      .++.+.++.++..|+++|.++....+
T Consensus       435 ~ll~~~~~~v~~~al~aL~~l~~~~~  460 (530)
T 1wa5_B          435 DLLEIADNRIIEVTLDALENILKMGE  460 (530)
T ss_dssp             HHTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHhhh
Confidence            99999999999999999999988663

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=100.00  E-value=5.1e-31  Score=298.53  Aligned_cols=432  Identities=21%  Similarity=0.237  Sum_probs=356.5

Q ss_pred             HHHhhhccCCchhhHHHHHHHHHHHHHhhcChhHHHHHHhC-CChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhh
Q 005282           51 IDILNSKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDN-GAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLL  129 (704)
Q Consensus        51 ~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~-g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l  129 (704)
                      ++.|..++.+  .+..++..|+.+|.+++.+...+..+.+. |+++.|+++|.+..         +++++..|+++|.+|
T Consensus       152 ip~Lv~lL~~--~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~---------d~~vr~~Aa~aL~~L  220 (780)
T 2z6g_A          152 IPELTKLLND--EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTN---------DVETARCTSGTLHNL  220 (780)
T ss_dssp             HHHHHHHHHC--SCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCC--CCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCC---------CHHHHHHHHHHHHHH
Confidence            4444444432  34568999999999999987777777655 89999999998653         248999999999999


Q ss_pred             cCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHH
Q 005282          130 AVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKV  209 (704)
Q Consensus       130 ~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~  209 (704)
                      +..++++..+.+.|+++.|+.+|++.+.        .++..|+++|.+++...+..+..+.+.|+++.|+.++.+++..+
T Consensus       221 s~~~~~~~~i~~~g~I~~Lv~lL~~~~~--------~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v  292 (780)
T 2z6g_A          221 SHHREGLLAIFKSGGIPALVNMLGSPVD--------SVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKF  292 (780)
T ss_dssp             HTSHHHHHHHHHTTHHHHHHHHTTCSCH--------HHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHH
T ss_pred             hCCchhHHHHHHcCCHHHHHHHHcCCCH--------HHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHH
Confidence            9878889999999999999999988754        89999999999999887888888889999999999999999999


Q ss_pred             HHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCH-HHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcC
Q 005282          210 QRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDA-SVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSS  288 (704)
Q Consensus       210 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~  288 (704)
                      +..++.+|.+++.++++.+..+.+.|+++.|+.++++.++ ..+..++.+|.+++.. +..+..++..|+++.|+.++.+
T Consensus       293 ~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~-~~~~~~i~~~g~l~~Ll~lL~~  371 (780)
T 2z6g_A          293 LAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHLTD  371 (780)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-TTHHHHHHHTTHHHHHGGGTTC
T ss_pred             HHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC-hHHHHHHHHhchHHHHHHHHcC
Confidence            9999999999998788999999999999999999997654 5666889999999964 6678888899999999999999


Q ss_pred             CChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC-chhhhHHhhCChHHHHH
Q 005282          289 SCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDT-HNQAGIAQDGGILPLLK  367 (704)
Q Consensus       289 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~L~~  367 (704)
                      .+..++..++++|.+++......   ....++++.|+.++.+.++.++..|+++|++|+.+. ..+..+.+.|+++.|++
T Consensus       372 ~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~  448 (780)
T 2z6g_A          372 PSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVR  448 (780)
T ss_dssp             SCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhccchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHH
Confidence            99999999999999998654332   122468999999999999999999999999999875 45667888899999999


Q ss_pred             hhcC-CC-hhHHHHHHHHHHHcccC-Cc---hhhHHHhhCCccccccccccccc--chHHHHHHHHHHH-------HHhh
Q 005282          368 LLDS-KN-GSLQHNAAFALYGLADN-ED---NVADLVRVGGVQKLQDGEFTVQP--TKDCVARTLKRLE-------EKVH  432 (704)
Q Consensus       368 ll~~-~~-~~v~~~a~~~L~~l~~~-~~---~~~~l~~~g~i~~l~~~~~~~~~--~~~~~~~~~~~~~-------~~~~  432 (704)
                      ++.+ ++ ..++..|+++|++|+.. ++   .+..+...|+++.|++.......  .....+..+.++.       ....
T Consensus       449 lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~  528 (780)
T 2z6g_A          449 TVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLRE  528 (780)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHHHHHHHH
T ss_pred             HHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            9965 33 48999999999999863 33   24578888999988765443322  1222333333332       2225


Q ss_pred             cchhHHHHHHHhhcc----------------------HHHHHHHHHHHHhccCCCccceeeecCCcHHHHHHHHhhcchh
Q 005282          433 GRVLNHLLYLLRVAD----------------------RAVKRRVTLALAHLCAPDDCKTIFIDNNGLELLLGLLESTSVK  490 (704)
Q Consensus       433 ~~~~~~L~~ll~~~~----------------------~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~~  490 (704)
                      .++++.|+.++.+++                      ++++..++.+|++|+.++.++..+.+.|+++.|+.++.++++.
T Consensus       529 ~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~  608 (780)
T 2z6g_A          529 QGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIEN  608 (780)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGCSCHH
T ss_pred             CCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcCCCHH
Confidence            678999999997754                      3466778889999988888888888899999999999999999


Q ss_pred             hhhhHHHHHHHHhhh
Q 005282          491 QREESSVALYKLATK  505 (704)
Q Consensus       491 ~~~~a~~~L~~L~~~  505 (704)
                      ++..|+.+|.+|+.+
T Consensus       609 v~~~a~~aL~~L~~~  623 (780)
T 2z6g_A          609 IQRVAAGVLCELAQD  623 (780)
T ss_dssp             HHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHhcC
Confidence            999999999999754

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.98  E-value=2.7e-30  Score=277.20  Aligned_cols=374  Identities=20%  Similarity=0.257  Sum_probs=308.6

Q ss_pred             HHHHhhhccCCchhhHHHHHHHHHHHHHhhc-ChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHh
Q 005282           50 QIDILNSKFSSDETDRAAAKTASHALVEFAK-NEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGL  128 (704)
Q Consensus        50 l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~  128 (704)
                      +++.|..++.++ .+..++..|+++|.+++. +++..+.+++.|+++.|+++|++++.          +++..|+++|++
T Consensus        65 ~i~~L~~~L~~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~----------~vr~~a~~~L~~  133 (450)
T 2jdq_A           65 VVARFVEFLKRK-ENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFE----------DVQEQAVWALGN  133 (450)
T ss_dssp             HHHHHHHHHTCT-TCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCH----------HHHHHHHHHHHH
T ss_pred             cHHHHHHHHCCC-CCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCH----------HHHHHHHHHHHH
Confidence            444444444433 245678999999999998 47788888899999999999998754          999999999999


Q ss_pred             hc-CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcC-hhhhhhhhccCCcHHHHHHhcCCC
Q 005282          129 LA-VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHEN-ANIKTRVRVEDGIPPLVELLKFVD  206 (704)
Q Consensus       129 l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~ll~~~~  206 (704)
                      ++ .+++.+..+.+.|+++.|+.++.+..+       +.++..++++|++++... +.....+ ..++++.|+.++.+++
T Consensus       134 l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~-------~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~~l~~~~  205 (450)
T 2jdq_A          134 IAGDSTMCRDYVLDCNILPPLLQLFSKQNR-------LTMTRNAVWALSNLCRGKSPPPEFAK-VSPCLNVLSWLLFVSD  205 (450)
T ss_dssp             HHTTCHHHHHHHHHTTCHHHHHHHTTSCCC-------HHHHHHHHHHHHHHHCCSSSCCCGGG-TGGGHHHHHHHTTCCC
T ss_pred             HccCCHHHHHHHHHCCCHHHHHHHhcCCCC-------HHHHHHHHHHHHHHhCCCCCCCCHHH-HHHHHHHHHHHHccCC
Confidence            99 678899999999999999999985322       399999999999999654 4333333 3889999999999999


Q ss_pred             HHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHh
Q 005282          207 VKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLL  286 (704)
Q Consensus       207 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll  286 (704)
                      +.++..++++|.+++.+.++....+...|+++.|+.++.++++.++..++++|++++..++...+.+.+.|+++.|+.++
T Consensus       206 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll  285 (450)
T 2jdq_A          206 TDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLL  285 (450)
T ss_dssp             HHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHH
Confidence            99999999999999987777888888999999999999999999999999999999988887777788889999999999


Q ss_pred             cCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcC--CchhhhHHhhCChHH
Q 005282          287 SSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQD--THNQAGIAQDGGILP  364 (704)
Q Consensus       287 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~~~~~  364 (704)
                      .++++.++..|+++|++++.+++.....+.+.|+++.|+.++.++++.++..|+++|++++.+  ++....+...|+++.
T Consensus       286 ~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~  365 (450)
T 2jdq_A          286 SSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKP  365 (450)
T ss_dssp             TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHH
Confidence            999999999999999999987777777788899999999999999999999999999999964  344556778899999


Q ss_pred             HHHhhcCCChhHHHHHHHHHHHcccCCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHh
Q 005282          365 LLKLLDSKNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLR  444 (704)
Q Consensus       365 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~  444 (704)
                      |++++.++++.++..++++|.+++...+..... ..+.+..+              ...+      ...+.++.|..+..
T Consensus       366 L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~-~~~~~~~~--------------~~~l------~~~g~~~~l~~l~~  424 (450)
T 2jdq_A          366 LCDLLTVMDSKIVQVALNGLENILRLGEQEAKR-NGTGINPY--------------CALI------EEAYGLDKIEFLQS  424 (450)
T ss_dssp             HHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHH-SCSCCCHH--------------HHHH------HHHHCHHHHHHHHC
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhc-cccchhHH--------------HHHH------HHcCcHHHHHHHHc
Confidence            999999999999999999999998643322111 01111110              0001      01234566777888


Q ss_pred             hccHHHHHHHHHHHHhccC
Q 005282          445 VADRAVKRRVTLALAHLCA  463 (704)
Q Consensus       445 ~~~~~v~~~a~~~L~~l~~  463 (704)
                      +++..++..|..+|.++-.
T Consensus       425 ~~~~~v~~~a~~~l~~~~~  443 (450)
T 2jdq_A          425 HENQEIYQKAFDLIEHYFG  443 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHHHHHCC
Confidence            8899999999999999854

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.97  E-value=2.7e-30  Score=261.69  Aligned_cols=280  Identities=21%  Similarity=0.252  Sum_probs=240.5

Q ss_pred             CCCchHHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhcc---CCCCCcchhHHHHHHHHHHHHhhhcChhhhhh
Q 005282          112 IPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYK---NGGNSRALSGVIRRAADAITNLAHENANIKTR  188 (704)
Q Consensus       112 ~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~---~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~  188 (704)
                      .++++.+. +|+++|+|++.++++|+.+.+.|+++.|+.+|....   ........+++++.|+|+|.|++.+++..+..
T Consensus        43 ~~~~~~~~-~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~  121 (354)
T 3nmw_A           43 APVEHQIC-PAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKAT  121 (354)
T ss_dssp             CGGGGTHH-HHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHH
T ss_pred             CcchHHHH-HHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            33344444 899999999988999999999999999999996431   00000112489999999999999877777777


Q ss_pred             hhcc-CCcHHHHHHhcCCCHHHHHHHHHHHHHhccC-CchhhHHhHhcCChHHHHHhh-cCCCHHHHHHHHHHHHHHhcC
Q 005282          189 VRVE-DGIPPLVELLKFVDVKVQRAAAGALRTLAFK-NDENKKLIVECNALPTLVLML-RSEDASVHFEAVGVIGNLVHS  265 (704)
Q Consensus       189 ~~~~-~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~  265 (704)
                      +... |++|.|+.+|++++++++..|+++|++|+.+ ++.++..+.+.|+++.|+++| +++++.+++.++++|+||+..
T Consensus       122 i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~  201 (354)
T 3nmw_A          122 LCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAH  201 (354)
T ss_dssp             HHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTT
T ss_pred             HHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHcc
Confidence            7554 5599999999999999999999999999974 567899999999999999975 678899999999999999986


Q ss_pred             ChhhHHHHH-HcCCHHHHHHHhcCCCh----hHHHHHHHHHHHHhc---cCCcchHHHHhcCChHHHHHhhCCCCHHHHH
Q 005282          266 SPSIKKEVI-LAGALQPVIGLLSSSCS----ESKREAALLLGQFAA---ADSNSKVHIVQRGAVRPLIEMLQSPDSQLKE  337 (704)
Q Consensus       266 ~~~~~~~~~-~~~~l~~L~~ll~~~~~----~~~~~a~~~L~~l~~---~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~  337 (704)
                      ++..+..+. ..|+++.|+.+|.+++.    +++..|+++|.|++.   .+++++..+.+.|+++.|+.+|++++..+++
T Consensus       202 ~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~  281 (354)
T 3nmw_A          202 CTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVS  281 (354)
T ss_dssp             CHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHH
T ss_pred             ChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHH
Confidence            666677777 68999999999987654    489999999999986   5778888999999999999999999999999


Q ss_pred             HHHHHHHHhhc-CCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcccCCc
Q 005282          338 MSAFALGRLAQ-DTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNED  392 (704)
Q Consensus       338 ~a~~~L~~l~~-~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  392 (704)
                      .|+++|+|++. +++.+..+.+.|++++|+++++++++.+++.|+++|.+|+.+..
T Consensus       282 ~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~  337 (354)
T 3nmw_A          282 NACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP  337 (354)
T ss_dssp             HHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence            99999999995 56677788999999999999999999999999999999997543

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.97  E-value=7.4e-30  Score=258.47  Aligned_cols=281  Identities=20%  Similarity=0.200  Sum_probs=242.2

Q ss_pred             HHHHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcC-CCCCCCCchHHHHHHHHHHHhhc-CChhhHHHHHHc-
Q 005282           66 AAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQL-TNAQIPYEHEVEKECAFALGLLA-VKPEHQQIIVDT-  142 (704)
Q Consensus        66 ~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~-~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~~~~-  142 (704)
                      .....|+++|.+++.++++++.+++.|+++.|+.+|..+... .......+++++..|+++|.||+ ++++.+..+... 
T Consensus        47 ~~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~  126 (354)
T 3nmw_A           47 HQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMK  126 (354)
T ss_dssp             GTHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcC
Confidence            345689999999999999999999999999999999632000 00000013579999999999999 666688777654 


Q ss_pred             CCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhc-ChhhhhhhhccCCcHHHHHHh-cCCCHHHHHHHHHHHHHh
Q 005282          143 GALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHE-NANIKTRVRVEDGIPPLVELL-KFVDVKVQRAAAGALRTL  220 (704)
Q Consensus       143 g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~ll-~~~~~~~~~~a~~~L~~l  220 (704)
                      |++|.|+++|++.+.        ++++.++++|+|++.. ++..+..+.+.|++|.|+++| +++++.+++.|+.+|++|
T Consensus       127 GaIp~LV~LL~s~~~--------~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nL  198 (354)
T 3nmw_A          127 GCMRALVAQLKSESE--------DLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNL  198 (354)
T ss_dssp             HHHHHHHHGGGCSCH--------HHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHCCCCH--------HHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            559999999997654        9999999999999974 677899999999999999975 578899999999999999


Q ss_pred             ccCCchhhHHhH-hcCChHHHHHhhcCCCH----HHHHHHHHHHHHHhc---CChhhHHHHHHcCCHHHHHHHhcCCChh
Q 005282          221 AFKNDENKKLIV-ECNALPTLVLMLRSEDA----SVHFEAVGVIGNLVH---SSPSIKKEVILAGALQPVIGLLSSSCSE  292 (704)
Q Consensus       221 ~~~~~~~~~~~~-~~~~i~~L~~lL~~~~~----~v~~~a~~~L~~l~~---~~~~~~~~~~~~~~l~~L~~ll~~~~~~  292 (704)
                      +.+.++++..+. ..|+++.|+++|.++++    .+++.|+++|.|++.   .+++.++.+.+.|+++.|+.+|.+++..
T Consensus       199 s~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~  278 (354)
T 3nmw_A          199 SAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLT  278 (354)
T ss_dssp             HTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHH
T ss_pred             HccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChH
Confidence            976778888887 78999999999987654    599999999999997   5788899999999999999999999999


Q ss_pred             HHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhh
Q 005282          293 SKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQA  354 (704)
Q Consensus       293 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~  354 (704)
                      ++..|+++|+|++..+++++..+.+.|+++.|+.++++++..+++.|+++|.||+.+.+.+.
T Consensus       279 v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~~  340 (354)
T 3nmw_A          279 IVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKY  340 (354)
T ss_dssp             HHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCGGG
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence            99999999999997788889999999999999999999999999999999999998866543

>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B

Probab=99.96  E-value=1.5e-28  Score=239.95  Aligned_cols=163  Identities=21%  Similarity=0.332  Sum_probs=145.8

Q ss_pred             hHHhhhcCCCcccEEEEEcCeEeehhHHHHhhcCHHHHHhhcCCCC--CCCCCceEcCCCCHHHHHHHHHHHhcCccccC
Q 005282          525 LGEQFVNNPTLSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYK--EKNAKDVEIPNIRWNVFELMMRFIYTGNVDVS  602 (704)
Q Consensus       525 l~~~~~~~~~~~d~~~~~~~~~~~~hk~iL~~~s~~f~~~f~~~~~--e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~  602 (704)
                      -.+.++.++.++||+|.++|+.|+|||.||+++|+||++||.+++.  |+....|.++++++++|+.+++|+|||.+.++
T Consensus        21 ~l~~l~~~~~~~Dv~l~v~~~~f~~Hr~vLaa~S~yF~~mf~~~~~~~e~~~~~i~l~~v~~~~f~~ll~~~Yt~~~~i~  100 (256)
T 3hve_A           21 ALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQIRLN  100 (256)
T ss_dssp             HHHTCCC--CCCCEEEEETTEEEEECHHHHHTTCHHHHHTC-----------CEEECSSCCHHHHHHHHHHHHHSCCCCC
T ss_pred             HHHHHHhcCCCcceEEEECCEEEechHHHHHHcCHHHHHHhCCCCCcccCCCCeEEeCCCCHHHHHHHHhhccCCCCccc
Confidence            3478899999999999999999999999999999999999999887  67778999999999999999999999999999


Q ss_pred             hhhHHHHHHHHhhhChHhHHHHHHHHHHhhCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCChhhhccchhcH
Q 005282          603 VDIAQDLLRAADQYLLEGLKRLCEYSIAQIISVENIMLMYELSEAYNATTLKQSCILFILEKFDKMRNKPWFFRLIRCVL  682 (704)
Q Consensus       603 ~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~L~~~~~  682 (704)
                      .+++.+++.+|++|+++.|++.|+++|.+.++++||+.++.+|..|+++.|.+.|.+|+.+||..+..+++|.+||.+.+
T Consensus       101 ~~~v~~ll~~A~~l~i~~l~~~c~~~L~~~l~~~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~~v~~~~~f~~L~~~~l  180 (256)
T 3hve_A          101 EDTIQDVVQAADLLLLTDLKTLCCEFLEGCIAAENCIGIRDFALHYCLHHVHYLATEYLETHFRDVSSTEEFLELSPQKL  180 (256)
T ss_dssp             -CCHHHHHHHHHHHTCHHHHHHHHHHHHHTCCSSTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTCHHHHSSCHHHH
T ss_pred             HhHHHHHHHHHHHHChHHHHHHHHHHHHhhCCHhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhCCcchhcCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998877


Q ss_pred             HHHHH
Q 005282          683 PEIRN  687 (704)
Q Consensus       683 ~~l~~  687 (704)
                      .++++
T Consensus       181 ~~lL~  185 (256)
T 3hve_A          181 KEVIS  185 (256)
T ss_dssp             HHHHH
T ss_pred             HHHHc
Confidence            77765

>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}

Probab=99.95  E-value=8.7e-28  Score=219.73  Aligned_cols=147  Identities=35%  Similarity=0.483  Sum_probs=136.6

Q ss_pred             HhhhcCCCcccEEEEEcCeEeehhHHHHhhcCHHHHHhhcCCCCCCCCCceEcCCCCHHHHHHHHHHHhcCccccChhhH
Q 005282          527 EQFVNNPTLSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFIYTGNVDVSVDIA  606 (704)
Q Consensus       527 ~~~~~~~~~~d~~~~~~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~~  606 (704)
                      ..+++++.++||+|.++|+.|+|||.||+++|+||++||.++|.|+....|.++++++++|+.+|+|+|+|++.++.+++
T Consensus        26 ~~l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~l~~~Yt~~~~~~~~~~  105 (172)
T 3htm_A           26 GGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMA  105 (172)
T ss_dssp             HHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSCCCGGGTTEEEECSSCHHHHHHHHHHHHHSCCTTGGGTH
T ss_pred             HHHHhCCCCcceEEEECCEEEEeeHHHHHHcCHHHHHHHccCccccCCCeEEecCCCHHHHHHHHHHHhCCCCCCcHHHH
Confidence            67889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhChHhHHHHHHHHHHhhCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCChh
Q 005282          607 QDLLRAADQYLLEGLKRLCEYSIAQIISVENIMLMYELSEAYNATTLKQSCILFILEKFDKMRNKPW  673 (704)
Q Consensus       607 ~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~  673 (704)
                      .+++.+|++|+++.|++.|+++|.+.++++||+.++.+|..|+++.|.+.|.+||.+||.++..+++
T Consensus       106 ~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n~~~~~~~A~~~~~~~L~~~~~~~i~~~~~~v~~s~~  172 (172)
T 3htm_A          106 DDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHATDVLETSG  172 (172)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC--------
T ss_pred             HHHHHHHHHhCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHcCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999987653

>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A

Probab=99.95  E-value=4.3e-28  Score=239.67  Aligned_cols=162  Identities=23%  Similarity=0.412  Sum_probs=146.5

Q ss_pred             HHhhhcCCCcccEEEEEc---CeEeehhHHHHhhcCHHHHHhhcCCCCCCCCCceEcC------CCCHHHHHHHHHHHhc
Q 005282          526 GEQFVNNPTLSDVTFVVE---GKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIP------NIRWNVFELMMRFIYT  596 (704)
Q Consensus       526 ~~~~~~~~~~~d~~~~~~---~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~l~------~~~~~~~~~~l~~~Y~  596 (704)
                      .+.++.++.+|||+|.++   |+.|+|||.||+++|+||++||.++|+|+....|.++      ++++++|..+++|+||
T Consensus        23 l~~l~~~~~~~Dv~l~v~~~~~~~f~~Hr~vLaa~S~yF~~mf~~~~~e~~~~~i~l~~~~~~~~v~~~~f~~ll~~~Yt  102 (279)
T 3i3n_A           23 QNEQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPEPDTVEAVIEYMYT  102 (279)
T ss_dssp             HHHHHHHTTTCCEEEECC----CEEEECHHHHHHHCTTSGGGCCC--------EEECCCCSSTTCSCHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCCCeEEEEcCCCCeEEehHHHHHHHcCHHHHHHhcCCCccccCCeEEeccccccCCCCHHHHHHHHHhhCc
Confidence            367889999999999998   9999999999999999999999999999999999998      8999999999999999


Q ss_pred             CccccChhhHHHHHHHHhhhChHhHHHHHHHHHHhhCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCChhhhc
Q 005282          597 GNVDVSVDIAQDLLRAADQYLLEGLKRLCEYSIAQIISVENIMLMYELSEAYNATTLKQSCILFILEKFDKMRNKPWFFR  676 (704)
Q Consensus       597 ~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~  676 (704)
                      |.+.++.+++.+++.+|++|+++.|++.|+++|.+.++++||+.++.+|..|+++.|.+.|.+||.+||..+..+++|.+
T Consensus       103 g~~~i~~~~v~~ll~~A~~l~i~~L~~~c~~~L~~~l~~~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~~v~~~~~f~~  182 (279)
T 3i3n_A          103 GRIRVSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLHLSNCVAIHSLAHMYTLSQLALKAADMIRRNFHKVIQDEEFYT  182 (279)
T ss_dssp             SEEEEETTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTHHHHTTSSGGGG
T ss_pred             CCcccCHHHHHHHHHHHHHHCcHHHHHHHHHHHHHcCCcchHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCcChhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhcHHHHHH
Q 005282          677 LIRCVLPEIRN  687 (704)
Q Consensus       677 L~~~~~~~l~~  687 (704)
                      ||.+.+.++++
T Consensus       183 L~~~~l~~lL~  193 (279)
T 3i3n_A          183 LPFHLIRDWLS  193 (279)
T ss_dssp             SCHHHHHHHHT
T ss_pred             CCHHHHHHHhc
Confidence            98886665543

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.94  E-value=1e-25  Score=221.12  Aligned_cols=243  Identities=31%  Similarity=0.376  Sum_probs=227.6

Q ss_pred             CChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHH
Q 005282           92 GAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRR  170 (704)
Q Consensus        92 g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~  170 (704)
                      |.++.|+++|.+++.          +++..|+++|.+++ .+++.+..+.+.|+++.|+++|++.+.        +++..
T Consensus         2 ~~i~~L~~~L~~~~~----------~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~--------~v~~~   63 (252)
T 4hxt_A            2 NDVEKLVKLLTSTDS----------ETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDS--------EVQKE   63 (252)
T ss_dssp             CHHHHHHHHTTCSCH----------HHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCH--------HHHHH
T ss_pred             CcHHHHHHHHcCCCH----------HHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCH--------HHHHH
Confidence            678999999998865          99999999999999 677799999999999999999998654        99999


Q ss_pred             HHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHH
Q 005282          171 AADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDAS  250 (704)
Q Consensus       171 a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~  250 (704)
                      ++++|++++.+++..+..+.+.|+++.|+.+++++++.++..++++|++++.++++.+..+.+.|+++.|++++.++++.
T Consensus        64 a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~  143 (252)
T 4hxt_A           64 AARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSE  143 (252)
T ss_dssp             HHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHH
T ss_pred             HHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHH
Confidence            99999999987799999999999999999999999999999999999999977889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCC
Q 005282          251 VHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQS  330 (704)
Q Consensus       251 v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~  330 (704)
                      ++..++++|++++..++.....+.+.|+++.|+.++.++++.++..++++|.+++..++.....+.+.|+++.|+.++.+
T Consensus       144 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~  223 (252)
T 4hxt_A          144 VQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTS  223 (252)
T ss_dssp             HHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCC
Confidence            99999999999998888888889999999999999999999999999999999998777888889999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhhcCCch
Q 005282          331 PDSQLKEMSAFALGRLAQDTHN  352 (704)
Q Consensus       331 ~~~~v~~~a~~~L~~l~~~~~~  352 (704)
                      +++.+++.|+++|+|++.....
T Consensus       224 ~~~~v~~~a~~~L~~l~~~~~~  245 (252)
T 4hxt_A          224 TDSEVQKEAQRALENIKSGGWL  245 (252)
T ss_dssp             SCHHHHHHHHHHHHHHHHTCBC
T ss_pred             CcHHHHHHHHHHHHHHHcCCCc
Confidence            9999999999999999976543

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.93  E-value=4.4e-25  Score=216.50  Aligned_cols=242  Identities=30%  Similarity=0.383  Sum_probs=224.0

Q ss_pred             CCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhcc
Q 005282          143 GALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAF  222 (704)
Q Consensus       143 g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~  222 (704)
                      |+++.|+++|.+++.        +++..++++|.+++..+++.+..+.+.|+++.|+.+++++++.++..++++|++++.
T Consensus         2 ~~i~~L~~~L~~~~~--------~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~   73 (252)
T 4hxt_A            2 NDVEKLVKLLTSTDS--------ETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS   73 (252)
T ss_dssp             CHHHHHHHHTTCSCH--------HHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred             CcHHHHHHHHcCCCH--------HHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence            578999999988764        999999999999998888888999999999999999999999999999999999998


Q ss_pred             CCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHH
Q 005282          223 KNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLG  302 (704)
Q Consensus       223 ~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~  302 (704)
                      ++++.+..+.+.|+++.++.++.++++.++..++++|++++..++.....+.+.|+++.|+.++.++++.++..++++|+
T Consensus        74 ~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~  153 (252)
T 4hxt_A           74 GPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALA  153 (252)
T ss_dssp             SCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            77999999999999999999999999999999999999999888888999999999999999999999999999999999


Q ss_pred             HHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC-chhhhHHhhCChHHHHHhhcCCChhHHHHHH
Q 005282          303 QFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDT-HNQAGIAQDGGILPLLKLLDSKNGSLQHNAA  381 (704)
Q Consensus       303 ~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~  381 (704)
                      +++..++.....+.+.|+++.|+.++.++++.++..++++|++++.+. ..+..+.+.|+++.|+++++++++.++..|+
T Consensus       154 ~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~  233 (252)
T 4hxt_A          154 NIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQ  233 (252)
T ss_dssp             HHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHH
Confidence            999877777788899999999999999999999999999999999854 4455678889999999999999999999999


Q ss_pred             HHHHHcccCCc
Q 005282          382 FALYGLADNED  392 (704)
Q Consensus       382 ~~L~~l~~~~~  392 (704)
                      ++|.+++....
T Consensus       234 ~~L~~l~~~~~  244 (252)
T 4hxt_A          234 RALENIKSGGW  244 (252)
T ss_dssp             HHHHHHHHTCB
T ss_pred             HHHHHHHcCCC
Confidence            99999986443

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.93  E-value=5.4e-25  Score=215.82  Aligned_cols=239  Identities=25%  Similarity=0.348  Sum_probs=220.2

Q ss_pred             CChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHH
Q 005282           92 GAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRR  170 (704)
Q Consensus        92 g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~  170 (704)
                      ...+.++..|++++.          +++..|+++|.++. .+++.+..+.+.|+++.|+++|++.+.        +++..
T Consensus        12 ~~~~~~~~~L~s~~~----------~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~--------~v~~~   73 (252)
T 4db8_A           12 SELPQMTQQLNSDDM----------QEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNE--------QILQE   73 (252)
T ss_dssp             CSHHHHHHHHHSSCS----------SHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCH--------HHHHH
T ss_pred             chHHHHHHHHcCCCH----------HHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCH--------HHHHH
Confidence            457899999999876          89999999998877 677788899999999999999998764        99999


Q ss_pred             HHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHH
Q 005282          171 AADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDAS  250 (704)
Q Consensus       171 a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~  250 (704)
                      ++++|++++.+++..+..+.+.|+++.|+.+++++++.++..|+++|++++.+.+.....+.+.|+++.|++++.++++.
T Consensus        74 a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~  153 (252)
T 4db8_A           74 ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ  153 (252)
T ss_dssp             HHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHH
Confidence            99999999988899999999999999999999999999999999999999974444338889999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCC
Q 005282          251 VHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQS  330 (704)
Q Consensus       251 v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~  330 (704)
                      ++..++++|++++..++.....+.+.|+++.|+.++.++++.++..|+++|++++..++..+..+.+.|+++.|+.++.+
T Consensus       154 v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~  233 (252)
T 4db8_A          154 ILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSH  233 (252)
T ss_dssp             HHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTC
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCC
Confidence            99999999999998888888888999999999999999999999999999999998777888889999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhhc
Q 005282          331 PDSQLKEMSAFALGRLAQ  348 (704)
Q Consensus       331 ~~~~v~~~a~~~L~~l~~  348 (704)
                      ++++++..|+++|+|++.
T Consensus       234 ~~~~v~~~A~~~L~~l~~  251 (252)
T 4db8_A          234 ENEKIQKEAQEALEKLQS  251 (252)
T ss_dssp             SSSHHHHTHHHHHHTTC-
T ss_pred             CCHHHHHHHHHHHHHHhc
Confidence            999999999999999975

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.93  E-value=1.6e-24  Score=212.44  Aligned_cols=239  Identities=24%  Similarity=0.342  Sum_probs=218.1

Q ss_pred             CCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhcc
Q 005282          143 GALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAF  222 (704)
Q Consensus       143 g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~  222 (704)
                      ...+.+...|.+.+.        +++..++++|.++...+++.+..+.+.|+++.|+.+++++++.++..|+++|.+++.
T Consensus        12 ~~~~~~~~~L~s~~~--------~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~   83 (252)
T 4db8_A           12 SELPQMTQQLNSDDM--------QEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS   83 (252)
T ss_dssp             CSHHHHHHHHHSSCS--------SHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred             chHHHHHHHHcCCCH--------HHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence            457889999998876        899999999988765567778889999999999999999999999999999999998


Q ss_pred             CCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHH
Q 005282          223 KNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLG  302 (704)
Q Consensus       223 ~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~  302 (704)
                      ++++.+..+.+.|+++.|+.+|.++++.++..|+++|++++...+.....+.+.|+++.|+.++.++++.++..++++|+
T Consensus        84 ~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~  163 (252)
T 4db8_A           84 GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS  163 (252)
T ss_dssp             SCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            88999999999999999999999999999999999999999886655578889999999999999999999999999999


Q ss_pred             HHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC-chhhhHHhhCChHHHHHhhcCCChhHHHHHH
Q 005282          303 QFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDT-HNQAGIAQDGGILPLLKLLDSKNGSLQHNAA  381 (704)
Q Consensus       303 ~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~  381 (704)
                      +++..++.....+.+.|+++.|+.++.++++.++..|+++|++++.+. ..+..+.+.|+++.|++++.++++.++..|+
T Consensus       164 ~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~  243 (252)
T 4db8_A          164 NIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQ  243 (252)
T ss_dssp             HHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHH
T ss_pred             HHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHH
Confidence            999877777888889999999999999999999999999999999654 4456678889999999999999999999999


Q ss_pred             HHHHHccc
Q 005282          382 FALYGLAD  389 (704)
Q Consensus       382 ~~L~~l~~  389 (704)
                      ++|.+++.
T Consensus       244 ~~L~~l~~  251 (252)
T 4db8_A          244 EALEKLQS  251 (252)
T ss_dssp             HHHHTTC-
T ss_pred             HHHHHHhc
Confidence            99999975

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.93  E-value=1.1e-24  Score=234.31  Aligned_cols=385  Identities=14%  Similarity=0.121  Sum_probs=294.1

Q ss_pred             HHHHHHHHHhhc-ChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHH-HHHHcCCcH
Q 005282           69 KTASHALVEFAK-NEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQ-IIVDTGALP  146 (704)
Q Consensus        69 ~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~-~~~~~g~l~  146 (704)
                      ..++.-+.+.++ +... +..+..+.++.|.+++++.            +++..|+-+|.++...+.... .+.  ...+
T Consensus       273 ~~a~L~lLsaACi~~~c-R~~I~~~~~~~L~~~l~~~------------~ir~lAavvL~KL~~~~~~~~~si~--~La~  337 (778)
T 3opb_A          273 TKELLRLLSSACIDETM-RTYITENYLQLLERSLNVE------------DVQIYSALVLVKTWSFTKLTCINLK--QLSE  337 (778)
T ss_dssp             HHHHHHHHHHHCCSHHH-HHHHHHHHHHHHHHHTTSG------------GGHHHHHHHHHHHTGGGTCTTCCHH--HHHH
T ss_pred             HHHHHHHHHHHhCCcHH-HHHHHHhHHHHHHHHhccH------------HHHHHHHHHHHHHhcCCCCCcCcHH--HHHH
Confidence            455666666666 5555 4445778889999999652            689999999999994332211 111  1334


Q ss_pred             HHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhcc-CCcHHHHHHhcC-CCHHHHHHHHHHHHHhccCC
Q 005282          147 HLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVE-DGIPPLVELLKF-VDVKVQRAAAGALRTLAFKN  224 (704)
Q Consensus       147 ~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~  224 (704)
                      .+.+.|.++..        +-+..|+..|+.++. .+..+..+... ++++.|+.+++. .+..+...++.++.|++...
T Consensus       338 ~~~~~L~~~~~--------~~~~~AvEgLaYLSl-~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~  408 (778)
T 3opb_A          338 IFINAISRRIV--------PKVEMSVEALAYLSL-KASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLP  408 (778)
T ss_dssp             HHHHHTTTCCH--------HHHHHHHHHHHHHTT-SSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHhcCCc--------cHHHHHHHHHHHHhC-CHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCC
Confidence            55555554432        459999999999997 56666666664 559999999994 78889999999999998733


Q ss_pred             ch--------------------------------------hhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCC
Q 005282          225 DE--------------------------------------NKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSS  266 (704)
Q Consensus       225 ~~--------------------------------------~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~  266 (704)
                      +.                                      ++..+.+.|+++.|+.++.++++.++..++++|.+++.. 
T Consensus       409 ~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d-  487 (778)
T 3opb_A          409 EEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS-  487 (778)
T ss_dssp             CCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS-
T ss_pred             cccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-
Confidence            31                                      345677889999999999999999999999999999965 


Q ss_pred             hhhHHHHHHcCCHHHHHHHhcCCChh---HHHHHHHHHHHHhccCCcchHHHHh---cCChHHHHHhhCC-CCH------
Q 005282          267 PSIKKEVILAGALQPVIGLLSSSCSE---SKREAALLLGQFAAADSNSKVHIVQ---RGAVRPLIEMLQS-PDS------  333 (704)
Q Consensus       267 ~~~~~~~~~~~~l~~L~~ll~~~~~~---~~~~a~~~L~~l~~~~~~~~~~~~~---~~~i~~L~~ll~~-~~~------  333 (704)
                      +..+..+++.|+++.|+.++.+....   .+..|+.+|.+++...+... .+..   .|++++|+.+|.. +..      
T Consensus       488 ~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~-~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~  566 (778)
T 3opb_A          488 KNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGL-IFKKYSALNAIPFLFELLPRSTPVDDNPLH  566 (778)
T ss_dssp             GGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHH-HSSSSCSTTHHHHHHHTSCCSSSCSSCC--
T ss_pred             HHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHH-HcCCCccccchHHHHHHcCCCCCccccccc
Confidence            88899999999999999999877544   78999999999985333221 1111   3889999999983 211      


Q ss_pred             -------HHHHHHHHHHHHhhcCCc-----hhhhHHhh-CChHHHHHhhcCCChhHHHHHHHHHHHcccCCchh-hHHHh
Q 005282          334 -------QLKEMSAFALGRLAQDTH-----NQAGIAQD-GGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNV-ADLVR  399 (704)
Q Consensus       334 -------~v~~~a~~~L~~l~~~~~-----~~~~~~~~-~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~-~~l~~  399 (704)
                             .-+..|+.+|.||+..++     .+..++.. |+++.|..++.+.+..+|++|+++++||+.+++.. ..+..
T Consensus       567 ~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~  646 (778)
T 3opb_A          567 NDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFN  646 (778)
T ss_dssp             -CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSC
T ss_pred             ccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHh
Confidence                   126689999999999873     36668874 99999999999999999999999999999988764 34432


Q ss_pred             hCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHHHHHHHHhcc-CCCccceeeecC-CcH
Q 005282          400 VGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLC-APDDCKTIFIDN-NGL  477 (704)
Q Consensus       400 ~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~-~~~~~~~~l~~~-~~i  477 (704)
                      .+. +.                          ..+-++.|+.++.+++..+|.+|+|+|++++ .++.....+++. +|+
T Consensus       647 ~~~-~~--------------------------~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi  699 (778)
T 3opb_A          647 LEN-PQ--------------------------SLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELI  699 (778)
T ss_dssp             CSS-HH--------------------------HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHH
T ss_pred             hcC-ch--------------------------hhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccH
Confidence            211 00                          0012567899999999999999999999995 466555555665 899


Q ss_pred             HHHHHHHhh--cchhhhhhHHHHHHHHhhhc
Q 005282          478 ELLLGLLES--TSVKQREESSVALYKLATKA  506 (704)
Q Consensus       478 ~~L~~ll~~--~~~~~~~~a~~~L~~L~~~~  506 (704)
                      +.++.++++  ++++++.+++.++.||+...
T Consensus       700 ~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~  730 (778)
T 3opb_A          700 ENAIQVFADQIDDIELRQRLLMLFFGLFEVI  730 (778)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhccCCCHHHHHHHHHHHHHHHHhh
Confidence            999999998  89999999999999999744

>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A

Probab=99.92  E-value=5.2e-25  Score=221.76  Aligned_cols=147  Identities=35%  Similarity=0.483  Sum_probs=131.3

Q ss_pred             HhhhcCCCcccEEEEEcCeEeehhHHHHhhcCHHHHHhhcCCCCCCCCCceEcCCCCHHHHHHHHHHHhcCccccChhhH
Q 005282          527 EQFVNNPTLSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFIYTGNVDVSVDIA  606 (704)
Q Consensus       527 ~~~~~~~~~~d~~~~~~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~~  606 (704)
                      ..++.++.++||+|.++|+.|+|||.||+++||||++||.+++.|+....|.++++++++|+.+|+|+|+|.++++.+++
T Consensus       166 ~~l~~~~~~~Dv~l~v~~~~f~~Hk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~L~~iYt~~~~~~~~~~  245 (312)
T 3hqi_A          166 GGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMA  245 (312)
T ss_dssp             HHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHTTC-----CCSEEEECSSCHHHHHHHHHHHHHSCCTTHHHHH
T ss_pred             HHHHhCCCCCceEEEECCEEEeHHHHHHHHcCHHHHHHhccCccccCCceEEecCCCHHHHHHHHHhhcCCCCCChHHHH
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhChHhHHHHHHHHHHhhCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCChh
Q 005282          607 QDLLRAADQYLLEGLKRLCEYSIAQIISVENIMLMYELSEAYNATTLKQSCILFILEKFDKMRNKPW  673 (704)
Q Consensus       607 ~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~  673 (704)
                      .+++.+|++|+++.|+..|+++|.+.++.+|+..++.+|..|++..|++.|++||..||.++..+++
T Consensus       246 ~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~v~~s~g  312 (312)
T 3hqi_A          246 DDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHATDVLETSG  312 (312)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC--------
T ss_pred             HHHHHHHHHhCHHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999987653

>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}

Probab=99.91  E-value=3e-25  Score=196.48  Aligned_cols=129  Identities=38%  Similarity=0.548  Sum_probs=99.3

Q ss_pred             HhhhcCCCcccEEEEEcCeEeehhHHHHhhcCHHHHHhhcCCCCCCCCCceEcCCCCHHHHHHHHHHHhcCccccChhhH
Q 005282          527 EQFVNNPTLSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFIYTGNVDVSVDIA  606 (704)
Q Consensus       527 ~~~~~~~~~~d~~~~~~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~~  606 (704)
                      ..+++++.++||++.++|+.|+|||.||+++|+||++||.+++.|+....|.+++++++.|+.+|+|+|+|.+.++.+++
T Consensus        17 ~~l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~~   96 (145)
T 4eoz_A           17 GGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMA   96 (145)
T ss_dssp             HHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSSSHHHHHTEEEECSSCHHHHHHHHHHHHHSCCTTGGGTH
T ss_pred             HHHHhCCCCcceEEEECCEEEEeehHHHHHcCHHHHHHHcCCCcCCCCceEEecCCCHHHHHHHHHhhccCccCCcHHHH
Confidence            67888999999999999999999999999999999999999999988889999999999999999999999999999999


Q ss_pred             HHHHHHHhhhChHhHHHHHHHHHHhhCChhhHHHHHHHHHHcCCHHHHH
Q 005282          607 QDLLRAADQYLLEGLKRLCEYSIAQIISVENIMLMYELSEAYNATTLKQ  655 (704)
Q Consensus       607 ~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~~~~~~~~~a~~~~~~~L~~  655 (704)
                      .+++.+|++|+++.|++.|+++|.+.++.+||+.++.+|..|++++|++
T Consensus        97 ~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n~~~~l~~A~~~~~~~Lk~  145 (145)
T 4eoz_A           97 DDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKT  145 (145)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHCC---------------------------
T ss_pred             HHHHHHHHHhCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHhcC
Confidence            9999999999999999999999999999999999999999999998863

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.91  E-value=2.3e-22  Score=216.40  Aligned_cols=380  Identities=15%  Similarity=0.127  Sum_probs=289.9

Q ss_pred             HHHHHHHHhhc-ChhHHHHHH-hCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHcCCcHH
Q 005282           70 TASHALVEFAK-NEEIVSLIV-DNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALPH  147 (704)
Q Consensus        70 ~a~~~L~~l~~-~~~~~~~l~-~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~  147 (704)
                      .++.++..+-. .|+.+..+. ..|.++.+.+.+.+...         ..+...++..|...|.++.+|..+. .++++.
T Consensus       231 ~~~~~l~~lfPi~p~~~s~lfl~e~~~~~l~~~~~~~~~---------~~~~~a~L~lLsaACi~~~cR~~I~-~~~~~~  300 (778)
T 3opb_A          231 IIVKTLSELYPSLTTLCSEIFLTKGLSKLFKKRVFEEQD---------LQFTKELLRLLSSACIDETMRTYIT-ENYLQL  300 (778)
T ss_dssp             HHHHHHHHHTTTTHHHHHHHHSTTTHHHHHHHHHHSSCC---------HHHHHHHHHHHHHHCCSHHHHHHHH-HHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHccccHHHHHHHHHhcccc---------hHHHHHHHHHHHHHhCCcHHHHHHH-HhHHHH
Confidence            34455555444 476666666 66888999988866543         4677777777777779999988885 567799


Q ss_pred             HHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchh
Q 005282          148 LVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDEN  227 (704)
Q Consensus       148 L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~  227 (704)
                      |.+.+++  .        .++..|+-+|..+.........  --....+.+.+++.+++.+-+..|+..|++++. .++.
T Consensus       301 L~~~l~~--~--------~ir~lAavvL~KL~~~~~~~~~--si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl-~~~V  367 (778)
T 3opb_A          301 LERSLNV--E--------DVQIYSALVLVKTWSFTKLTCI--NLKQLSEIFINAISRRIVPKVEMSVEALAYLSL-KASV  367 (778)
T ss_dssp             HHHHTTS--G--------GGHHHHHHHHHHHTGGGTCTTC--CHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTT-SSHH
T ss_pred             HHHHhcc--H--------HHHHHHHHHHHHHhcCCCCCcC--cHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhC-CHHH
Confidence            9988864  2        6788899999888753322111  112245667777877777779999999999997 7788


Q ss_pred             hHHhHh-cCChHHHHHhhcC-CCHHHHHHHHHHHHHHhcCChh-------------------------------------
Q 005282          228 KKLIVE-CNALPTLVLMLRS-EDASVHFEAVGVIGNLVHSSPS-------------------------------------  268 (704)
Q Consensus       228 ~~~~~~-~~~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~-------------------------------------  268 (704)
                      ++.+.+ .+.++.|++++++ .+..+...++.+|.|++...+.                                     
T Consensus       368 Ke~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~  447 (778)
T 3opb_A          368 KIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILL  447 (778)
T ss_dssp             HHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHH
Confidence            888775 5569999999995 7889999999999999974331                                     


Q ss_pred             -hHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHH---HHHHHHHHHH
Q 005282          269 -IKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQ---LKEMSAFALG  344 (704)
Q Consensus       269 -~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~---v~~~a~~~L~  344 (704)
                       .+..+.+.|+++.|+.++.++++.++..++++|.+++. +++++..+++.|+++.|+.++.+....   .+..|+.+|.
T Consensus       448 ~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~-d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALA  526 (778)
T 3opb_A          448 FNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITR-SKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALT  526 (778)
T ss_dssp             HHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHT-SGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHH
T ss_pred             HHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHH
Confidence             23455678999999999999999999999999999985 789999999999999999999887544   8999999999


Q ss_pred             HhhcCCchhhhHHh---hCChHHHHHhhcC-CCh-------------hHHHHHHHHHHHcccCCc-----hhhHHHhh-C
Q 005282          345 RLAQDTHNQAGIAQ---DGGILPLLKLLDS-KNG-------------SLQHNAAFALYGLADNED-----NVADLVRV-G  401 (704)
Q Consensus       345 ~l~~~~~~~~~~~~---~~~~~~L~~ll~~-~~~-------------~v~~~a~~~L~~l~~~~~-----~~~~l~~~-g  401 (704)
                      +++...+....+..   .|++++|+.+|.. ...             --+..|+.+|.||+..++     .+..++++ |
T Consensus       527 rLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~g  606 (778)
T 3opb_A          527 RMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKV  606 (778)
T ss_dssp             HHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHH
T ss_pred             HHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcC
Confidence            99966554433211   3889999999973 111             127799999999998763     35666663 4


Q ss_pred             CcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHHHHHHHHhccCCCccc-eeeecC------
Q 005282          402 GVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPDDCK-TIFIDN------  474 (704)
Q Consensus       402 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~-~~l~~~------  474 (704)
                      +                                 ++.|..++.++++.++.+|+++++||+.++... ..+...      
T Consensus       607 a---------------------------------~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~  653 (778)
T 3opb_A          607 Y---------------------------------WSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSL  653 (778)
T ss_dssp             H---------------------------------HHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHH
T ss_pred             H---------------------------------HHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhh
Confidence            4                                 456778888899999999999999998777653 222221      


Q ss_pred             CcHHHHHHHHhhcchhhhhhHHHHHHHHhhhc
Q 005282          475 NGLELLLGLLESTSVKQREESSVALYKLATKA  506 (704)
Q Consensus       475 ~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~  506 (704)
                      ++++.|+.++.+++.++|++|+++|.+++...
T Consensus       654 ~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~  685 (778)
T 3opb_A          654 RNFNILVKLLQLSDVESQRAVAAIFANIATTI  685 (778)
T ss_dssp             HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHC
T ss_pred             ccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCC
Confidence            24889999999999999999999999996533

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.89  E-value=3.9e-22  Score=189.40  Aligned_cols=200  Identities=26%  Similarity=0.372  Sum_probs=184.9

Q ss_pred             hccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhh
Q 005282          190 RVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSI  269 (704)
Q Consensus       190 ~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~  269 (704)
                      ...++.+.|..+++++++.++..|+++|.+++.++++.+..+.+.|+++.|+.+|.++++.++..|+++|++++..++..
T Consensus         9 ~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~   88 (210)
T 4db6_A            9 HHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ   88 (210)
T ss_dssp             ----CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             cccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHH
Confidence            34578899999999999999999999999999878899999999999999999999999999999999999999888888


Q ss_pred             HHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcC
Q 005282          270 KKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQD  349 (704)
Q Consensus       270 ~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~  349 (704)
                      +..+.+.|+++.|+.+|.++++.++..|+++|+|++..++.....+.+.|+++.|+.+++++++.++..|+++|++++..
T Consensus        89 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~  168 (210)
T 4db6_A           89 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG  168 (210)
T ss_dssp             HHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence            89999999999999999999999999999999999987777778888999999999999999999999999999999987


Q ss_pred             -CchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHccc
Q 005282          350 -THNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLAD  389 (704)
Q Consensus       350 -~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~  389 (704)
                       ++.+..+.+.|+++.|++++.++++.+++.|+++|.+++.
T Consensus       169 ~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          169 GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred             CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence             5566677888999999999999999999999999999975

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.89  E-value=7.5e-22  Score=187.43  Aligned_cols=200  Identities=24%  Similarity=0.332  Sum_probs=186.6

Q ss_pred             HcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHh
Q 005282          141 DTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTL  220 (704)
Q Consensus       141 ~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l  220 (704)
                      ..|..+.|..+|++.+.        +++..|+++|.+++..++..+..+.+.|+++.|+.+|+++++.++..|+++|+++
T Consensus        10 ~~~~~~~l~~LL~s~~~--------~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l   81 (210)
T 4db6_A           10 HGSELPQMVQQLNSPDQ--------QELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI   81 (210)
T ss_dssp             ---CHHHHHHHTTCSCH--------HHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             ccchhHHHHHHhcCCCH--------HHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            45788999999987765        9999999999999988888899999999999999999999999999999999999


Q ss_pred             ccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHH
Q 005282          221 AFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALL  300 (704)
Q Consensus       221 ~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~  300 (704)
                      +.+++..+..+.+.|+++.|+.+|.++++.++..|+++|++++..++.....+.+.|+++.|+.++.+++..++..|+++
T Consensus        82 ~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~a  161 (210)
T 4db6_A           82 ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWA  161 (210)
T ss_dssp             TTSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred             hcCCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHH
Confidence            98788999999999999999999999999999999999999998888888888999999999999999999999999999


Q ss_pred             HHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 005282          301 LGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQ  348 (704)
Q Consensus       301 L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~  348 (704)
                      |.+++..++..+..+.+.|+++.|+.++.++++.+++.|+++|.+++.
T Consensus       162 L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          162 LSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             HHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence            999998778888889999999999999999999999999999999985

>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}

Probab=99.88  E-value=1.2e-22  Score=169.59  Aligned_cols=104  Identities=28%  Similarity=0.546  Sum_probs=94.0

Q ss_pred             hhcCCCcccEEEEEcC----eEeehhHHHHhhcCHHHHHhhcCCCCCCCCCceEcCCCCHHHHHHHHHHHhcCccccChh
Q 005282          529 FVNNPTLSDVTFVVEG----KQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFIYTGNVDVSVD  604 (704)
Q Consensus       529 ~~~~~~~~d~~~~~~~----~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~  604 (704)
                      +++++.++||++.++|    +.|+|||.||+++|+||++||.++|.|+. ..|.++++++++|+.+|+|+|+|.+.++.+
T Consensus         2 l~~~~~~~Dv~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~-~~i~l~~~~~~~f~~~l~~iYt~~~~~~~~   80 (109)
T 2vkp_A            2 MFNNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVK-SEIHIPDVEPAAFLILLKYMYSDEIDLEAD   80 (109)
T ss_dssp             CTTCCTTCCEEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC------C-CEEEETTSCHHHHHHHHHHHHHCCCCCCTT
T ss_pred             cccCCCcccEEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccCC-CeEEeCCCCHHHHHHHHHHHcCCCccCCHH
Confidence            6788999999999988    89999999999999999999999999988 899999999999999999999999999999


Q ss_pred             hHHHHHHHHhhhChHhHHHHHHHHHHhhC
Q 005282          605 IAQDLLRAADQYLLEGLKRLCEYSIAQII  633 (704)
Q Consensus       605 ~~~~ll~~A~~~~~~~l~~~c~~~l~~~~  633 (704)
                      ++.+++.+|++|+++.|++.|+++|.+++
T Consensus        81 ~~~~ll~~A~~~~~~~L~~~c~~~l~~~l  109 (109)
T 2vkp_A           81 TVLATLYAAKKYIVPALAKACVNFLETSL  109 (109)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHhhC
Confidence            99999999999999999999999998753

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.88  E-value=2.6e-21  Score=190.42  Aligned_cols=227  Identities=21%  Similarity=0.193  Sum_probs=188.6

Q ss_pred             hhhHHHHHHHHHHHHHhhcChhHHHHHHhCCChHHHHh-hccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHHH
Q 005282           62 ETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVE-HLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQII  139 (704)
Q Consensus        62 ~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~-lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~  139 (704)
                      +.+...+..|+..|.++..+.++...+.+.|+++.|+. +|.+++.          +++..|+|+|++++ +++.+++.+
T Consensus        51 ~~~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~----------~vr~~Aa~~Lg~ia~~n~~~~~~v  120 (296)
T 1xqr_A           51 AADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAA----------GLRWRAAQLIGTCSQNVAAIQEQV  120 (296)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSH----------HHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCH----------HHHHHHHHHHHHHHhCCHHHHHHH
Confidence            34456788999999999999889899999999999999 9998765          99999999999999 789999999


Q ss_pred             HHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHH
Q 005282          140 VDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRT  219 (704)
Q Consensus       140 ~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~  219 (704)
                      ++.|+++.|+.+|++..+       ..+++.|+|+|++++.+++.....+...|+++.|+.+|+++++.++..|+|+|.+
T Consensus       121 v~~g~l~~Ll~LL~~~~~-------~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~  193 (296)
T 1xqr_A          121 LGLGALRKLLRLLDRDAC-------DTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQN  193 (296)
T ss_dssp             HHTTHHHHHHHHHHHCSC-------HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHccCCC-------HHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            999999999999987432       2899999999999998888888888889999999999999999999999999999


Q ss_pred             hccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHc-CCHHH----HHHHhc-CC-Chh
Q 005282          220 LAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILA-GALQP----VIGLLS-SS-CSE  292 (704)
Q Consensus       220 l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~l~~----L~~ll~-~~-~~~  292 (704)
                      ++.++++.+..+++.|+++.|+.+|.++++.++..++++|++|+...+......... ..+..    -.+-++ .. +.+
T Consensus       194 L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e  273 (296)
T 1xqr_A          194 LLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQE  273 (296)
T ss_dssp             HHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHH
T ss_pred             HHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHH
Confidence            998888999999999999999999999999999999999999998754433322221 11211    122333 22 345


Q ss_pred             HHHHHHHHHHHHh
Q 005282          293 SKREAALLLGQFA  305 (704)
Q Consensus       293 ~~~~a~~~L~~l~  305 (704)
                      +...+...+.++.
T Consensus       274 ~~~~~~~il~~~f  286 (296)
T 1xqr_A          274 ELEFCEKLLQTCF  286 (296)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHc
Confidence            5666666666554

>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A

Probab=99.88  E-value=2e-22  Score=171.25  Aligned_cols=104  Identities=27%  Similarity=0.395  Sum_probs=96.1

Q ss_pred             HHhhhcCCCcccEEEEEcCeEeehhHHHHhhcCHHHHHhhcCCCCCCCCCceEcCCCCHHHHHHHHHHHhcCccccChhh
Q 005282          526 GEQFVNNPTLSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFIYTGNVDVSVDI  605 (704)
Q Consensus       526 ~~~~~~~~~~~d~~~~~~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~  605 (704)
                      .+++++++.++||++.++|+.|+|||.||+++|+||++||.++|.|+....|.++++++++|+.+++|+|+|.+.++.++
T Consensus        16 l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~ll~~~Yt~~~~~~~~~   95 (120)
T 2if5_A           16 LNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDFVSAEALTALMDFAYTATLTVSTAN   95 (120)
T ss_dssp             HHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHC-----CCSEEECCSSCHHHHHHHHHHHHHSCCCCCGGG
T ss_pred             HHHHHhcCCCCCeEEEECCEEEeHHHHHHHHhCHHHHHHhcCCccccCCceEEeCCCCHHHHHHHHHHHcCCCCccCHHH
Confidence            36788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhChHhHHHHHHHHH
Q 005282          606 AQDLLRAADQYLLEGLKRLCEYSI  629 (704)
Q Consensus       606 ~~~ll~~A~~~~~~~l~~~c~~~l  629 (704)
                      +.+++.+|++|++++|++.|+++|
T Consensus        96 ~~~ll~~A~~~~i~~L~~~C~~~L  119 (120)
T 2if5_A           96 VGDILSAARLLEIPAVSHVCADLL  119 (120)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHh
Confidence            999999999999999999999987

>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A

Probab=99.87  E-value=6.4e-22  Score=169.92  Aligned_cols=105  Identities=25%  Similarity=0.411  Sum_probs=100.7

Q ss_pred             HHhhhcCCCcccEEEEEcCeEeehhHHHHhhcCHHHHHhhcCCCCCCCCCceEc-CCCCHHHHHHHHHHHhcCccccChh
Q 005282          526 GEQFVNNPTLSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEI-PNIRWNVFELMMRFIYTGNVDVSVD  604 (704)
Q Consensus       526 ~~~~~~~~~~~d~~~~~~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~l-~~~~~~~~~~~l~~~Y~~~~~~~~~  604 (704)
                      .++++.++.++||+|.++|+.|+|||.||+++|+||++||.+++.| ....|.+ +++++++|+.+|+|+|+|.+.++.+
T Consensus        20 l~~l~~~~~~~Dv~l~v~~~~~~aHk~iLaa~S~~F~~~f~~~~~e-~~~~i~l~~~~~~~~f~~ll~~~Ytg~~~~~~~   98 (127)
T 1r29_A           20 LNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKR-NLSVINLDPEINPEGFNILLDFMYTSRLNLREG   98 (127)
T ss_dssp             HHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTSTTTT-TCSEEECCTTSCHHHHHHHHHHHHHSCCCCCTT
T ss_pred             HHHHHhcCCCCCEEEEECCEEEehHHHHHHHhCHHHHHHhcCCccC-CCCEEEeCCCCCHHHHHHHHHHHcCCCcCcCHH
Confidence            3678899999999999999999999999999999999999999998 7789999 8999999999999999999999999


Q ss_pred             hHHHHHHHHhhhChHhHHHHHHHHHHh
Q 005282          605 IAQDLLRAADQYLLEGLKRLCEYSIAQ  631 (704)
Q Consensus       605 ~~~~ll~~A~~~~~~~l~~~c~~~l~~  631 (704)
                      ++.+++.+|++|+++.|++.|+++|.+
T Consensus        99 ~~~~ll~~A~~~~i~~L~~~c~~~l~~  125 (127)
T 1r29_A           99 NIMAVMATAMYLQMEHVVDTCRKFIKA  125 (127)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence            999999999999999999999999975

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.86  E-value=6.3e-21  Score=187.66  Aligned_cols=225  Identities=16%  Similarity=0.123  Sum_probs=188.5

Q ss_pred             hHHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHH-HHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCC
Q 005282          116 HEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVS-LLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDG  194 (704)
Q Consensus       116 ~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~-lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~  194 (704)
                      .+-+..|+..|.+++.+.++...+.+.|+++.|+. +|.+++.        +++..|+|+|++++.+++..+..+++.|+
T Consensus        54 ~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~--------~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~  125 (296)
T 1xqr_A           54 QQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAA--------GLRWRAAQLIGTCSQNVAAIQEQVLGLGA  125 (296)
T ss_dssp             HHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSH--------HHHHHHHHHHHHHHTTCHHHHHHHHHTTH
T ss_pred             HHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCH--------HHHHHHHHHHHHHHhCCHHHHHHHHHCCC
Confidence            36788999999999988889999999999999999 9987654        99999999999999999999999999999


Q ss_pred             cHHHHHHhcC-CCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 005282          195 IPPLVELLKF-VDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEV  273 (704)
Q Consensus       195 i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~  273 (704)
                      +++|+.+|++ +++.++..|+|+|.+++.+++...+.+.+.|+++.|+.+|++++..++..|+|+|.+++.++++.+..+
T Consensus       126 l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~v  205 (296)
T 1xqr_A          126 LRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTL  205 (296)
T ss_dssp             HHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred             HHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHH
Confidence            9999999995 589999999999999998888888889999999999999999999999999999999998888899999


Q ss_pred             HHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhc-CCh----HHHHHhhCC-C-CHHHHHHHHHHHHHh
Q 005282          274 ILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQR-GAV----RPLIEMLQS-P-DSQLKEMSAFALGRL  346 (704)
Q Consensus       274 ~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-~~i----~~L~~ll~~-~-~~~v~~~a~~~L~~l  346 (704)
                      ++.|+++.|+.+|.+++..++..++.+|++++...+......... ..+    +.-+.-++. . ..++.+.+...+-++
T Consensus       206 v~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~  285 (296)
T 1xqr_A          206 CSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTC  285 (296)
T ss_dssp             HHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999997533322222211 111    111223332 2 356666666666655


Q ss_pred             hc
Q 005282          347 AQ  348 (704)
Q Consensus       347 ~~  348 (704)
                      ..
T Consensus       286 f~  287 (296)
T 1xqr_A          286 FS  287 (296)
T ss_dssp             CC
T ss_pred             cC
Confidence            53

>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}

Probab=99.86  E-value=8e-22  Score=172.38  Aligned_cols=103  Identities=24%  Similarity=0.421  Sum_probs=94.7

Q ss_pred             HhhhcCCCcccEEEEEcCeEeehhHHHHhhcCHHHHHhhcCCCCC--CCCCceEcCCCCHHHHHHHHHHHhcCccccChh
Q 005282          527 EQFVNNPTLSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKE--KNAKDVEIPNIRWNVFELMMRFIYTGNVDVSVD  604 (704)
Q Consensus       527 ~~~~~~~~~~d~~~~~~~~~~~~hk~iL~~~s~~f~~~f~~~~~e--~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~  604 (704)
                      +.++.++.+|||+|.++|+.|+|||.||+++|+||++||.+++.+  +....|.++++++++|+.+|+|+|+|.+.++.+
T Consensus        39 ~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~~e~e~~~~~I~l~~v~~~~f~~lL~fiYtg~~~i~~~  118 (144)
T 2ppi_A           39 SSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQIRLNED  118 (144)
T ss_dssp             HHTTC--CCCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHCC-----CCCEEECCSSCHHHHHHHHHHHTTSCCCCCTT
T ss_pred             HHHHhcCCCcceEEEECCEEEehHHHHHHHcCHHHHHHHcCCCccccCCCcEEEeCCCCHHHHHHHHHHHhCCCCCCCHH
Confidence            678899999999999999999999999999999999999998875  667899999999999999999999999999999


Q ss_pred             hHHHHHHHHhhhChHhHHHHHHHHH
Q 005282          605 IAQDLLRAADQYLLEGLKRLCEYSI  629 (704)
Q Consensus       605 ~~~~ll~~A~~~~~~~l~~~c~~~l  629 (704)
                      ++.+++.+|++|++++|++.|+++|
T Consensus       119 ~v~~ll~~A~~l~i~~L~~~C~~~L  143 (144)
T 2ppi_A          119 TIQDVVQAADLLLLTDLKTLCCEFL  143 (144)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHh
Confidence            9999999999999999999999886

>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}

Probab=99.86  E-value=7.4e-22  Score=171.86  Aligned_cols=109  Identities=25%  Similarity=0.366  Sum_probs=103.1

Q ss_pred             HhhhcCCCcccEEEEEcCeEeehhHHHHhhcCHHHHHhhcCCCCCCCCCceEcC-CCCHHHHHHHHHHHhcCccccChhh
Q 005282          527 EQFVNNPTLSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIP-NIRWNVFELMMRFIYTGNVDVSVDI  605 (704)
Q Consensus       527 ~~~~~~~~~~d~~~~~~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~l~-~~~~~~~~~~l~~~Y~~~~~~~~~~  605 (704)
                      ++++.++.++||+|.++|+.|+|||.||+++|+||++||.+++.++  ..|.++ ++++++|+.+|+|+|+|.+.++.++
T Consensus        28 ~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e~--~~i~l~~~v~~~~~~~lL~~~Ytg~~~i~~~~  105 (138)
T 2z8h_A           28 NDQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYFHSRIVGQTDAE--LTVTLPEEVTVKGFEPLIQFAYTAKLILSKDN  105 (138)
T ss_dssp             HHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTCCCTT--EEEECCTTSCHHHHHHHHHHHHHSCCCCCTTT
T ss_pred             HHHHhhCCCcCeEEEECCEEEechHHHHHHcCHHHHHHHhcCCCCC--ceEEeCCCCCHHHHHHHHHHhcCCCcccCHHH
Confidence            6788999999999999999999999999999999999999988764  478895 8999999999999999999999999


Q ss_pred             HHHHHHHHhhhChHhHHHHHHHHHHhhCChhh
Q 005282          606 AQDLLRAADQYLLEGLKRLCEYSIAQIISVEN  637 (704)
Q Consensus       606 ~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~~  637 (704)
                      +.+++.+|++|+++.|++.|+++|.+.++.+|
T Consensus       106 v~~ll~~A~~~~i~~L~~~C~~~l~~~l~~sn  137 (138)
T 2z8h_A          106 VDEVCRCVEFLSVHNIEESCFQFLKFKFLDST  137 (138)
T ss_dssp             HHHHHHHHHHHTCGGGHHHHHHHTTCCCSCCC
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHhccccc
Confidence            99999999999999999999999999888776

>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}

Probab=99.85  E-value=9.5e-22  Score=166.28  Aligned_cols=101  Identities=24%  Similarity=0.371  Sum_probs=95.1

Q ss_pred             HhhhcCCCcccEEEEEcCeEeehhHHHHhhcCHHHHHhhcCCCCCCCCCceEcCCCCHHHHHHHHHHHhcCccccChhhH
Q 005282          527 EQFVNNPTLSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFIYTGNVDVSVDIA  606 (704)
Q Consensus       527 ~~~~~~~~~~d~~~~~~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~~  606 (704)
                      ++++.++.++||++.++|+.|+|||.||+++|+||++||.+++    ...|.++++++++|+.+|+|+|||++.++.+++
T Consensus        16 ~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~----~~~i~l~~~~~~~f~~ll~~iYtg~~~~~~~~v   91 (119)
T 3b84_A           16 NKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQSLYGDGS----GGSVVLPAGFAEIFGLLLDFFYTGHLALTSGNR   91 (119)
T ss_dssp             HHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTTT----CCCEEECGGGHHHHHHHHHHHHHSCCCCCTTTH
T ss_pred             HHHHhcCCCcceEEEECCEEEEeeHHHHhhcCHHHHHHHCCCC----CCeEEeCCCCHHHHHHHHHHHcCCCCccCHHHH
Confidence            6788899999999999999999999999999999999999876    468999999999999999999999999999999


Q ss_pred             HHHHHHHhhhChHhHHHHHHHHHHh
Q 005282          607 QDLLRAADQYLLEGLKRLCEYSIAQ  631 (704)
Q Consensus       607 ~~ll~~A~~~~~~~l~~~c~~~l~~  631 (704)
                      .+++.+|++|++++|++.|+++|.+
T Consensus        92 ~~ll~~A~~~~i~~L~~~C~~~l~~  116 (119)
T 3b84_A           92 DQVLLAARELRVPEAVELCQSFKPK  116 (119)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHCC--
T ss_pred             HHHHHHHHHhCcHHHHHHHHHHHHH
Confidence            9999999999999999999999865

>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A

Probab=99.85  E-value=2.4e-21  Score=164.45  Aligned_cols=103  Identities=25%  Similarity=0.407  Sum_probs=96.8

Q ss_pred             HHhhhcCCCcccEEEEEcCeEeehhHHHHhhcCHHHHHhhcCCCCCCCCCceEcCCCCHHHHHHHHHHHhcCccccChhh
Q 005282          526 GEQFVNNPTLSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFIYTGNVDVSVDI  605 (704)
Q Consensus       526 ~~~~~~~~~~~d~~~~~~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~  605 (704)
                      .++++.++.++||++.++|+.|+|||.||+++|+||++||.++     ...|.++++++++|+.+|+|+|+|+++++.++
T Consensus        19 l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~-----~~~i~l~~~~~~~f~~ll~~~Ytg~~~~~~~~   93 (121)
T 1buo_A           19 ANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRN-----SQHYTLDFLSPKTFQQILEYAYTATLQAKAED   93 (121)
T ss_dssp             HHHHHHHTTTCCEEEEESSCEEEECHHHHHHHCHHHHHHTTSC-----CSEEEECSSCHHHHHHHHHHHHHSCCCCCGGG
T ss_pred             HHHHHhcCCCCCEEEEECCEEEehhHHHHhhcCHHHHHHHcCC-----CcEEEeCCCCHHHHHHHHHhhcCCCcCCCHHH
Confidence            3678899999999999999999999999999999999999874     45899999999999999999999999999999


Q ss_pred             HHHHHHHHhhhChHhHHHHHHHHHHhhC
Q 005282          606 AQDLLRAADQYLLEGLKRLCEYSIAQII  633 (704)
Q Consensus       606 ~~~ll~~A~~~~~~~l~~~c~~~l~~~~  633 (704)
                      +.+++.+|++|++++|++.|+++|.+.|
T Consensus        94 ~~~ll~~A~~~~i~~L~~~c~~~l~~~I  121 (121)
T 1buo_A           94 LDDLLYAAEILEIEYLEEQCLKMLETIQ  121 (121)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHHHhC
Confidence            9999999999999999999999997643

>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}

Probab=99.85  E-value=1.5e-21  Score=168.89  Aligned_cols=107  Identities=23%  Similarity=0.321  Sum_probs=93.9

Q ss_pred             HHhhhcCCCcccEEEEEcCeEeehhHHHHhhcCHHHHHhhcCCCCCCCCCceEcCCCCHHHHHHHHHHHhcCccccChhh
Q 005282          526 GEQFVNNPTLSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFIYTGNVDVSVDI  605 (704)
Q Consensus       526 ~~~~~~~~~~~d~~~~~~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~  605 (704)
                      .+.++.++.++||+|.++|+.|+|||.||+++|+||++||.+++    ...|.++++++++|+.+|+|+|+|++.++.++
T Consensus        16 l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~----~~~i~l~~~~~~~f~~lL~fiYtg~~~i~~~~   91 (135)
T 2yy9_A           16 LNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQRIYGDGT----GGSVVLPAGFAEIFGLLLDFFYTGHLALTSGN   91 (135)
T ss_dssp             HHHHHHTTTTCCEEEEETTEEEEECHHHHHHHCHHHHHTCC--------CCEEECGGGHHHHHHHHHHHHHSCCCCCTTT
T ss_pred             HHHHHhcCCCcceEEEECCEEEehHHHHHHHhCHHHHHHHcCCC----CCeEEeCCCCHHHHHHHHHHHhCCCCCCCHHH
Confidence            36789999999999999999999999999999999999999877    45799999999999999999999999999999


Q ss_pred             HHHHHHHHhhhChHhHHHHHHHHHHhhCChh
Q 005282          606 AQDLLRAADQYLLEGLKRLCEYSIAQIISVE  636 (704)
Q Consensus       606 ~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~  636 (704)
                      +.+++.+|++|+++.|++.|+++|.+.+...
T Consensus        92 v~~ll~~A~~l~i~~L~~~C~~~l~~~l~~~  122 (135)
T 2yy9_A           92 RDQVLLAAKELRVPEAVELCQSFQPQTSVGQ  122 (135)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHCCC------
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHHhccCC
Confidence            9999999999999999999999998766543

>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}

Probab=99.85  E-value=4.4e-21  Score=161.73  Aligned_cols=100  Identities=25%  Similarity=0.402  Sum_probs=94.2

Q ss_pred             HhhhcCCCcccEEEEEcCeEeehhHHHHhhcCHHHHHhhcCCCCCCCCCceEcC--CCCHHHHHHHHHHHhcCccccChh
Q 005282          527 EQFVNNPTLSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIP--NIRWNVFELMMRFIYTGNVDVSVD  604 (704)
Q Consensus       527 ~~~~~~~~~~d~~~~~~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~l~--~~~~~~~~~~l~~~Y~~~~~~~~~  604 (704)
                      +.++.++.++||+|.++|+.|+|||.||+++|+||++||.++    ....|.++  ++++++|+.+|+|+|+|++.++.+
T Consensus        14 ~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~----~~~~i~l~~~~~~~~~f~~ll~~~Yt~~~~~~~~   89 (116)
T 2vpk_A           14 NKQREAGFLCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRST----SENNVFLDQSQVKADGFQKLLEFIYTGTLNLDSW   89 (116)
T ss_dssp             HHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTC----CCSCEECCTTTCCHHHHHHHHHHHHHSCCCCCTT
T ss_pred             HHHHhcCCCCcEEEEECCEEEeccHHHHhhcCHHHHHHHcCC----CCCeEEeecCCCCHHHHHHHHHHHcCCCcccCHH
Confidence            678889999999999999999999999999999999999986    34577777  999999999999999999999999


Q ss_pred             hHHHHHHHHhhhChHhHHHHHHHHHH
Q 005282          605 IAQDLLRAADQYLLEGLKRLCEYSIA  630 (704)
Q Consensus       605 ~~~~ll~~A~~~~~~~l~~~c~~~l~  630 (704)
                      ++.+++.+|++|+++.|++.|+++|.
T Consensus        90 ~v~~ll~~A~~~~i~~L~~~C~~~l~  115 (116)
T 2vpk_A           90 NVKEIHQAADYLKVEEVVTKCKIKME  115 (116)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence            99999999999999999999999985

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.83  E-value=3.2e-20  Score=174.13  Aligned_cols=196  Identities=20%  Similarity=0.278  Sum_probs=172.4

Q ss_pred             ChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHH
Q 005282           93 AVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRA  171 (704)
Q Consensus        93 ~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a  171 (704)
                      .+|.++++|.+++.        +.+++..|+++|.+++ .+++++..+.+.|++|.|+++|++.+.        ++++.|
T Consensus         9 ~i~~lV~lL~s~~~--------~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~--------~vq~~A   72 (233)
T 3tt9_A            9 TLERAVSMLEADHM--------LPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNE--------DVQRAV   72 (233)
T ss_dssp             CHHHHHHTCCSSCC--------CHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCH--------HHHHHH
T ss_pred             cHHHHHHHhCCCCc--------hHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCH--------HHHHHH
Confidence            57999999999864        4478999999999999 899999999999999999999998654        999999


Q ss_pred             HHHHHHhhhcChhhhhhhhccCCcHHHHHHhc-CCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhc-----
Q 005282          172 ADAITNLAHENANIKTRVRVEDGIPPLVELLK-FVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLR-----  245 (704)
Q Consensus       172 ~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~-----  245 (704)
                      +|+|.|++.++++++..+.+.|++|.|+++|+ +++.++++.++.+|++|+. .+.++..+.+. +++.|+.++.     
T Consensus        73 a~aL~nLa~~~~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~-~~~~k~~i~~~-~i~~Lv~ll~~p~sG  150 (233)
T 3tt9_A           73 CGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSS-NDKLKNLMITE-ALLTLTENIIIPFSG  150 (233)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT-SGGGHHHHHHH-HHHHHCCCCCHHHHC
T ss_pred             HHHHHHHHhCCHHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHc-ChhhHHHHHhc-cHHHHHHHHhccccC
Confidence            99999999888999999999999999999998 5799999999999999996 77888888764 6899988653     


Q ss_pred             -----------CCCHHHHHHHHHHHHHHhcCChhhHHHHHHc-CCHHHHHHHhcCC------ChhHHHHHHHHHHHHhc
Q 005282          246 -----------SEDASVHFEAVGVIGNLVHSSPSIKKEVILA-GALQPVIGLLSSS------CSESKREAALLLGQFAA  306 (704)
Q Consensus       246 -----------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~l~~L~~ll~~~------~~~~~~~a~~~L~~l~~  306 (704)
                                 ..++.+++.|..+|.|++..+++.++.+.+. |+++.|+.+++..      +...++.|+.+|.|++.
T Consensus       151 ~~~~~~~~~~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~  229 (233)
T 3tt9_A          151 WPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSY  229 (233)
T ss_dssp             CCGGGCCCCCTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCC
T ss_pred             CcccccccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHh
Confidence                       1367999999999999998878889989876 6689999999742      55679999999999974

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.83  E-value=5.4e-20  Score=172.55  Aligned_cols=195  Identities=17%  Similarity=0.204  Sum_probs=169.4

Q ss_pred             ChHHHHHhhcCCCH--HHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchH
Q 005282          236 ALPTLVLMLRSEDA--SVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKV  313 (704)
Q Consensus       236 ~i~~L~~lL~~~~~--~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~  313 (704)
                      .++.++++|+++++  .++..++++|.+++..++..+..+.+.|+++.|+.+|.+++++++..|+++|.|++..+++++.
T Consensus         9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~   88 (233)
T 3tt9_A            9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL   88 (233)
T ss_dssp             CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence            58999999999888  8999999999999988888999999999999999999999999999999999999987788999


Q ss_pred             HHHhcCChHHHHHhhC-CCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhc----------------CCChhH
Q 005282          314 HIVQRGAVRPLIEMLQ-SPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLD----------------SKNGSL  376 (704)
Q Consensus       314 ~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~----------------~~~~~v  376 (704)
                      .+.+.|+++.|+.+|+ +++.++++.|+.+|+||+..+.++..+.+. ++++|++++.                ..++++
T Consensus        89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v  167 (233)
T 3tt9_A           89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDFDI  167 (233)
T ss_dssp             HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHH
T ss_pred             HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchHHH
Confidence            9999999999999998 578999999999999999999988888864 6889887652                136689


Q ss_pred             HHHHHHHHHHccc-CCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhc------cHH
Q 005282          377 QHNAAFALYGLAD-NEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVA------DRA  449 (704)
Q Consensus       377 ~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~------~~~  449 (704)
                      +++|..+|+||+. ++++++.+.+.+|                                +++.|+.+++..      +..
T Consensus       168 ~~na~~~L~nLss~~~~~R~~~r~~~G--------------------------------li~~Lv~~l~~~~~~~~~~~k  215 (233)
T 3tt9_A          168 FYNVTGCLRNMSSAGADGRKAMRRCDG--------------------------------LIDSLVHYVRGTIADYQPDDK  215 (233)
T ss_dssp             HHHHHHHHHHHTTSCHHHHHHHHTSTT--------------------------------HHHHHHHHHHHHHHTTCTTCH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHCCC--------------------------------cHHHHHHHHHhhhhcccchhH
Confidence            9999999999997 6688888988654                                234455555542      457


Q ss_pred             HHHHHHHHHHhccC
Q 005282          450 VKRRVTLALAHLCA  463 (704)
Q Consensus       450 v~~~a~~~L~~l~~  463 (704)
                      .+++|+.+|.||+.
T Consensus       216 ~~En~v~~L~nLs~  229 (233)
T 3tt9_A          216 ATENCVCILHNLSY  229 (233)
T ss_dssp             HHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHh
Confidence            89999999999964

>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A

Probab=99.83  E-value=9.6e-21  Score=160.07  Aligned_cols=99  Identities=25%  Similarity=0.362  Sum_probs=93.6

Q ss_pred             HhhhcCCCcccEEEEEcCeEeehhHHHHhhcCHHHHHhhcCCCCCCCCCceEcCCCCHHHHHHHHHHHhcCccccChhhH
Q 005282          527 EQFVNNPTLSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFIYTGNVDVSVDIA  606 (704)
Q Consensus       527 ~~~~~~~~~~d~~~~~~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~~  606 (704)
                      ++++.++.++||++.++|+.|+|||.||+++|+||++||.++     ...|.++++++++|+.+|+|+|||++.++.+++
T Consensus        19 ~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~-----~~~i~l~~~~~~~f~~ll~~~Ytg~~~i~~~~~   93 (119)
T 2q81_A           19 NQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFVDQ-----KDVVHLDISNAAGLGQVLEFMYTAKLSLSPENV   93 (119)
T ss_dssp             HHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHC-----CSGGGGGGCCHHHHHHHHHHHHHSCCCCCTTTH
T ss_pred             HHHHhcCCCcceEEEECCEEEehhHHHHHHcCHHHHHHHcCC-----CCEEEeCCCCHHHHHHHHHHHcCCCCccCHHHH
Confidence            678889999999999999999999999999999999999873     457888999999999999999999999999999


Q ss_pred             HHHHHHHhhhChHhHHHHHHHHHH
Q 005282          607 QDLLRAADQYLLEGLKRLCEYSIA  630 (704)
Q Consensus       607 ~~ll~~A~~~~~~~l~~~c~~~l~  630 (704)
                      .+++.+|++|++++|++.|+++|.
T Consensus        94 ~~ll~~A~~l~i~~L~~~C~~~l~  117 (119)
T 2q81_A           94 DDVLAVATFLQMQDIITACHALKS  117 (119)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHh
Confidence            999999999999999999999984

>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A

Probab=99.82  E-value=2.6e-21  Score=165.56  Aligned_cols=101  Identities=28%  Similarity=0.414  Sum_probs=95.6

Q ss_pred             HhhhcCCCcccEEEEEcCeEeehhHHHHhhcCHHHHHhhcCCCCCCCCCceEcCC-CCHHHHHHHHHHHhcCccccChhh
Q 005282          527 EQFVNNPTLSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPN-IRWNVFELMMRFIYTGNVDVSVDI  605 (704)
Q Consensus       527 ~~~~~~~~~~d~~~~~~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~l~~-~~~~~~~~~l~~~Y~~~~~~~~~~  605 (704)
                      ++++.++.++||+|.++|+.|+|||.||+++|+||++||.+++.+  ...|.+++ +++++|+.+|+|+|+|++.++.++
T Consensus        24 ~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e--~~~i~l~~~~~~~~f~~~l~~iYtg~~~~~~~~  101 (125)
T 3ohu_A           24 NDQRKKDILCDVTLIVERKEFRAHRAVLAACSEYFWQALVGQTKN--DLVVSLPEEVTARGFGPLLQFAYTAKLLLSREN  101 (125)
T ss_dssp             HHHHHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTCCCS--SCEEECCTTCCHHHHHHHHHHHTTSEEEECTTT
T ss_pred             HHHHhcCCccceEEEECCEEEechHHHHHHcCHHHHHHhcCCCCC--CcEEEeCCCCCHHHHHHHHHhHcCCceEECHHH
Confidence            678899999999999999999999999999999999999999877  56899998 999999999999999999999999


Q ss_pred             HHHHHHHHhhhChHhHHHHHHHHH
Q 005282          606 AQDLLRAADQYLLEGLKRLCEYSI  629 (704)
Q Consensus       606 ~~~ll~~A~~~~~~~l~~~c~~~l  629 (704)
                      +.+++.+|++|+++.|++.|++||
T Consensus       102 v~~ll~~A~~l~i~~L~~~C~~~L  125 (125)
T 3ohu_A          102 IREVIRCAEFLRMHNLEDSCFSFL  125 (125)
T ss_dssp             HHHHHHHHHHHTBSSCTTSSCCCC
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHhC
Confidence            999999999999999999998754

>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}

Probab=99.82  E-value=7.7e-21  Score=163.38  Aligned_cols=102  Identities=26%  Similarity=0.400  Sum_probs=90.1

Q ss_pred             HhhhcCCCcccEEEEEcCeEeehhHHHHhhcCHHHHHhhcCCCCCCCCCceEcC-CCCHHHHHHHHHHHhcCccccChhh
Q 005282          527 EQFVNNPTLSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIP-NIRWNVFELMMRFIYTGNVDVSVDI  605 (704)
Q Consensus       527 ~~~~~~~~~~d~~~~~~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~l~-~~~~~~~~~~l~~~Y~~~~~~~~~~  605 (704)
                      +.++.++.++||++.++|+.|+|||.||+++|+||++||.++    ....|.++ ++++++|+.+|+|+|+|++.++.++
T Consensus        25 ~~l~~~~~~~Dv~l~v~~~~~~~Hk~vLaa~S~~F~~~f~~~----~~~~i~l~~~~~~~~f~~ll~~iYtg~~~i~~~~  100 (129)
T 3ga1_A           25 NEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDLFNNS----RSAVVELPAAVQPQSFQQILSFCYTGRLSMNVGD  100 (129)
T ss_dssp             HHHHHTTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHHHC----CCSEEECCTTCCHHHHHHHHHHHHHSEEECCTTT
T ss_pred             HHHHhcCCCcceEEEECCEEEEehHHHHHHcCHHHHHHHcCC----CCCEEEECCCCCHHHHHHHHHHHhCCccccCHHH
Confidence            678889999999999999999999999999999999999986    56789997 8999999999999999999999999


Q ss_pred             HHHHHHHHhhhChHhHHHHHHHHHHhh
Q 005282          606 AQDLLRAADQYLLEGLKRLCEYSIAQI  632 (704)
Q Consensus       606 ~~~ll~~A~~~~~~~l~~~c~~~l~~~  632 (704)
                      +.+++.+|++|+++.|++.|+++|.+.
T Consensus       101 ~~~ll~~A~~~~i~~l~~~C~~~L~~~  127 (129)
T 3ga1_A          101 QDLLMYTAGFLQIQEIMEKGTEFFLKV  127 (129)
T ss_dssp             HHHHHHHHHHTTBTTSSCC--------
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence            999999999999999999999999764

>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}

Probab=99.82  E-value=3.9e-21  Score=163.86  Aligned_cols=102  Identities=24%  Similarity=0.404  Sum_probs=93.3

Q ss_pred             HhhhcCCCcccEEEEEcCeEeehhHHHHhhcCHHHHHhhcCCCCCCCCCceEcC-CCCHHHHHHHHHHHhcCccccChhh
Q 005282          527 EQFVNNPTLSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIP-NIRWNVFELMMRFIYTGNVDVSVDI  605 (704)
Q Consensus       527 ~~~~~~~~~~d~~~~~~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~l~-~~~~~~~~~~l~~~Y~~~~~~~~~~  605 (704)
                      ++++.++.++||+|.++|+.|+|||.||+++|+||++||.+++.++  ..|.++ ++++++|+.+|+|+|+|.+.++.++
T Consensus        21 ~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~mf~~~~~e~--~~i~l~~~v~~~~f~~lL~~iYtg~~~i~~~~   98 (124)
T 2ihc_A           21 NDQRKKDVLCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVGQADGE--LNITLPEEVTVKGFEPLIQFAYTAKLILSKEN   98 (124)
T ss_dssp             HHHHHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTC---C--EEEECCTTSCHHHHHHHHHHHHHSEEEEETTT
T ss_pred             HHHHhcCCCcCEEEEECCEEEecHHHHHHHcCHHHHHHHcCCCCCC--ceEeecCCcCHHHHHHHHHHhcCCCcccCHHH
Confidence            6788999999999999999999999999999999999999998764  478885 8999999999999999999999999


Q ss_pred             HHHHHHHHhhhChHhHHHHHHHHHH
Q 005282          606 AQDLLRAADQYLLEGLKRLCEYSIA  630 (704)
Q Consensus       606 ~~~ll~~A~~~~~~~l~~~c~~~l~  630 (704)
                      +.+++.+|++|+++.|++.|+++|.
T Consensus        99 v~~ll~~A~~~~~~~L~~~C~~~l~  123 (124)
T 2ihc_A           99 VDEVCKCVEFLSVHNIEESCFQFLK  123 (124)
T ss_dssp             HHHHHHHHHHHTBSSCCGGGGGTC-
T ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHh
Confidence            9999999999999999999998874

>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0

Probab=99.79  E-value=1.4e-19  Score=151.96  Aligned_cols=94  Identities=20%  Similarity=0.264  Sum_probs=86.7

Q ss_pred             hhcCCCcccEEEEEcCeEeehhHHHHhhcCHHHHHhhcCCCCCCCCCceEcCCCCHHHHHHHHHHHhcCccccChhhHHH
Q 005282          529 FVNNPTLSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFIYTGNVDVSVDIAQD  608 (704)
Q Consensus       529 ~~~~~~~~d~~~~~~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~~~~  608 (704)
                      .+.++.+|||++.++|+.|+|||.||+++|+||++         ....|.++++++++|+.+|+|+|||++.++.+++.+
T Consensus        24 ~r~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~---------~~~~i~l~~v~~~~f~~ll~fiYtg~~~i~~~~v~~   94 (119)
T 3m5b_A           24 ARLRPALCDTLITVGSQEFPAHSLVLAGVSQQLGR---------RGQWALGEGISPSTFAQLLNFVYGESVELQPGELRP   94 (119)
T ss_dssp             HHHTTTTCCEEEEETTEEEEECHHHHHTTCGGGCC---------CEEEECCSSCCHHHHHHHHHHHTTCCEEECGGGHHH
T ss_pred             HHhcCCCcceEEEECCEEEeeEHHHHHHcCHHHhc---------CCCEEEeCCCCHHHHHHHHHHHcCCCcCcCHHHHHH
Confidence            36778999999999999999999999999999985         245789999999999999999999999999999999


Q ss_pred             HHHHHhhhChHhHHHHHHHHHHh
Q 005282          609 LLRAADQYLLEGLKRLCEYSIAQ  631 (704)
Q Consensus       609 ll~~A~~~~~~~l~~~c~~~l~~  631 (704)
                      ++.+|++|+++.|++.|++++.+
T Consensus        95 ll~aA~~l~i~~l~~~C~~~~~~  117 (119)
T 3m5b_A           95 LQEAARALGVQSLEEACWRARGD  117 (119)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHC--
T ss_pred             HHHHHHHhCCHHHHHHHHHHHhh
Confidence            99999999999999999998764

>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A

Probab=99.78  E-value=4.1e-19  Score=148.84  Aligned_cols=93  Identities=26%  Similarity=0.426  Sum_probs=87.4

Q ss_pred             HHhhhcCCCcccEEEEEcCeEeehhHHHHhhcCHHHHHhhcCCCCCCCCCceEcCCCCHHHHHHHHHHHhcCcc-ccChh
Q 005282          526 GEQFVNNPTLSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFIYTGNV-DVSVD  604 (704)
Q Consensus       526 ~~~~~~~~~~~d~~~~~~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~-~~~~~  604 (704)
                      .++++.++.+|||++.++|+.|+|||.||+++|+||++||.++     ...|.++++++++|+.+++|+|||++ .++.+
T Consensus        22 l~~~~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~~F~~~f~~~-----~~~i~l~~~~~~~f~~~l~~~Ytg~~~~~~~~   96 (116)
T 3fkc_A           22 LNEQRGHGLFCDVTVIVEDRKFRAHKNILSASSTYFHQLFSVA-----GQVVELSFIRAEIFAEILNYIYSSKIVRVRSD   96 (116)
T ss_dssp             HHHHHHHTTTCCEEEEETTEEEEECHHHHHHHCHHHHHHTTSC-----CSEEEECSSCHHHHHHHHHHHTTSCCCSCCHH
T ss_pred             HHHHHhcCCceeEEEEECCEEEehhHHHHHHcCHHHHHHHcCC-----CCEEEeCCCCHHHHHHHHHhhcCCCcCCCCHH
Confidence            3678899999999999999999999999999999999999875     46899999999999999999999999 79999


Q ss_pred             hHHHHHHHHhhhChHhHHH
Q 005282          605 IAQDLLRAADQYLLEGLKR  623 (704)
Q Consensus       605 ~~~~ll~~A~~~~~~~l~~  623 (704)
                      ++.+++.+|++|+++.|++
T Consensus        97 ~~~~ll~~A~~l~i~~L~~  115 (116)
T 3fkc_A           97 LLDELIKSGQLLGVKFIAA  115 (116)
T ss_dssp             HHHHHHHHHHHHTCHHHHT
T ss_pred             HHHHHHHHHHHhCccccCc
Confidence            9999999999999999874

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.72  E-value=1.7e-15  Score=158.83  Aligned_cols=337  Identities=16%  Similarity=0.165  Sum_probs=257.9

Q ss_pred             hhhHHHHHHHHHHHHhhhccCCchhhHHHHHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHH
Q 005282           39 TQQDLVQDIRAQIDILNSKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEV  118 (704)
Q Consensus        39 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v  118 (704)
                      +.+.....++.+++.+...     .....++.|+..|..++++-  +. -+.+++++.|+..|+....        |.++
T Consensus        15 ~~qs~~etI~~L~~Rl~~~-----tl~eDRR~Av~~Lk~~sk~y--~~-~Vg~~~l~~li~~L~~d~~--------D~e~   78 (651)
T 3grl_A           15 PQHTEAETIQKLCDRVASS-----TLLDDRRNAVRALKSLSKKY--RL-EVGIQAMEHLIHVLQTDRS--------DSEI   78 (651)
T ss_dssp             ---CHHHHHHHHHHHHHHC-----CSHHHHHHHHHHHHHTTTTT--TT-HHHHHTHHHHHHHHHSCTT--------CHHH
T ss_pred             CCCChhhHHHHHHHHHhhc-----cchhHHHHHHHHHHHHHHHh--HH-HhhhhhHHHHHHHHhcccc--------cHHH
Confidence            3455667788899998663     33446789999999998742  12 2356789999999999876        7899


Q ss_pred             HHHHHHHHHhhc-CChh-----------------hHHHH-HHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhh
Q 005282          119 EKECAFALGLLA-VKPE-----------------HQQII-VDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLA  179 (704)
Q Consensus       119 ~~~a~~~L~~l~-~~~~-----------------~~~~~-~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~  179 (704)
                      ...++.+|.++. .+++                 +.+.+ .+.+.++.|+.+|...+.        .++.+++.+|..++
T Consensus        79 v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df--------~vR~~alqlL~~L~  150 (651)
T 3grl_A           79 IGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDF--------HVRWPGVKLLTSLL  150 (651)
T ss_dssp             HHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCH--------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccH--------HHHHHHHHHHHHHH
Confidence            999999998876 3321                 22333 355789999999987654        89999999999999


Q ss_pred             hcChh-hhhhhh-ccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCC----HHHHH
Q 005282          180 HENAN-IKTRVR-VEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSED----ASVHF  253 (704)
Q Consensus       180 ~~~~~-~~~~~~-~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~----~~v~~  253 (704)
                      ..++. .++.+. ..++++.|+.+|.++...+|..++..|.+|+.++++.++.+.-.|+++.|+.++....    ..+..
T Consensus       151 ~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~  230 (651)
T 3grl_A          151 KQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVE  230 (651)
T ss_dssp             HHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHH
T ss_pred             hcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHH
Confidence            87877 677777 5699999999999999999999999999999988888888888999999999998644    47889


Q ss_pred             HHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChh------HHHH---HHHHHHHHhccCC------cchHHHHhc
Q 005282          254 EAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSE------SKRE---AALLLGQFAAADS------NSKVHIVQR  318 (704)
Q Consensus       254 ~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~------~~~~---a~~~L~~l~~~~~------~~~~~~~~~  318 (704)
                      .++.+|.||...++.++..+.+.|.++.|..++..+...      ...+   +..++.-++..+.      .++..+.+.
T Consensus       231 DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~  310 (651)
T 3grl_A          231 DCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQC  310 (651)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHC
Confidence            999999999999998999999999999999999754321      2223   4445566655422      456678889


Q ss_pred             CChHHHHHhhCCC--CHHHHHHHHHHHHHhhcCCc-hhhhHHhhC---------ChHHHHHhhcC-CChhHHHHHHHHHH
Q 005282          319 GAVRPLIEMLQSP--DSQLKEMSAFALGRLAQDTH-NQAGIAQDG---------GILPLLKLLDS-KNGSLQHNAAFALY  385 (704)
Q Consensus       319 ~~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~---------~~~~L~~ll~~-~~~~v~~~a~~~L~  385 (704)
                      |+++.|++++..+  +..++..|..+++.+..++. ++..+....         .+..++.++.+ ....+|.+|+.++.
T Consensus       311 g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~  390 (651)
T 3grl_A          311 GLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQ  390 (651)
T ss_dssp             THHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHH
Confidence            9999999998765  67899999999999997654 455554432         12224444544 45788999999999


Q ss_pred             HcccC-CchhhHHHh
Q 005282          386 GLADN-EDNVADLVR  399 (704)
Q Consensus       386 ~l~~~-~~~~~~l~~  399 (704)
                      .+..+ ++.+..++.
T Consensus       391 ay~~~N~~~Q~~i~~  405 (651)
T 3grl_A          391 CFLYKNQKGQGEIVS  405 (651)
T ss_dssp             HHHTTCHHHHHHHHH
T ss_pred             HHHhCCHHHHHHHHH
Confidence            88864 444555544

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.66  E-value=4.5e-14  Score=148.09  Aligned_cols=417  Identities=17%  Similarity=0.152  Sum_probs=283.7

Q ss_pred             HHHHHHHHHHhhhccCCchhhHHHHHHHHHHHHHhhc-Ch-----------------hHHHHHH-hCCChHHHHhhccCC
Q 005282           44 VQDIRAQIDILNSKFSSDETDRAAAKTASHALVEFAK-NE-----------------EIVSLIV-DNGAVPALVEHLQTP  104 (704)
Q Consensus        44 ~~~~~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~-~~-----------------~~~~~l~-~~g~i~~L~~lL~~~  104 (704)
                      ...++.+++.|..    +.++......++.+|.++.. ++                 .+.+.++ +.+.|+.|+.+|+..
T Consensus        59 ~~~l~~li~~L~~----d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~  134 (651)
T 3grl_A           59 IQAMEHLIHVLQT----DRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEF  134 (651)
T ss_dssp             HHTHHHHHHHHHS----CTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCC
T ss_pred             hhhHHHHHHHHhc----ccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCc
Confidence            3445555555544    34555566778888877644 21                 1334444 568999999999887


Q ss_pred             CcCCCCCCCCchHHHHHHHHHHHhhc-CChh-hHHHHHHc-CCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhc
Q 005282          105 PQLTNAQIPYEHEVEKECAFALGLLA-VKPE-HQQIIVDT-GALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHE  181 (704)
Q Consensus       105 ~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~-~~~~~~~~-g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~  181 (704)
                      +-          .+|..++++|..|+ ..++ .++.+... ++++.|+.+|.+...        .++..++..|.+++.+
T Consensus       135 df----------~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE--------~iRneallLL~~Lt~~  196 (651)
T 3grl_A          135 DF----------HVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSRE--------VIRNDGVLLLQALTRS  196 (651)
T ss_dssp             CH----------HHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSH--------HHHHHHHHHHHHHHTT
T ss_pred             cH----------HHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchH--------HHHHHHHHHHHHHhcC
Confidence            54          99999999999999 6666 78888855 999999999998765        8899999999999999


Q ss_pred             ChhhhhhhhccCCcHHHHHHhcCCC----HHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCH------HH
Q 005282          182 NANIKTRVRVEDGIPPLVELLKFVD----VKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDA------SV  251 (704)
Q Consensus       182 ~~~~~~~~~~~~~i~~L~~ll~~~~----~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~------~v  251 (704)
                      +++.++.+.-.|+++.|+.++..+.    ..+...++.++.+|..+++.++..+.+.|+++.|..++..++.      ..
T Consensus       197 n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk  276 (651)
T 3grl_A          197 NGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQK  276 (651)
T ss_dssp             CHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHH
T ss_pred             CHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHH
Confidence            9999999999999999999999544    4788999999999999999999999999999999999974432      12


Q ss_pred             HH---HHHHHHHHHhcC------ChhhHHHHHHcCCHHHHHHHhcCC--ChhHHHHHHHHHHHHhccCCcchHHHHhcC-
Q 005282          252 HF---EAVGVIGNLVHS------SPSIKKEVILAGALQPVIGLLSSS--CSESKREAALLLGQFAAADSNSKVHIVQRG-  319 (704)
Q Consensus       252 ~~---~a~~~L~~l~~~------~~~~~~~~~~~~~l~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~-  319 (704)
                      ..   .++.++.-+...      ...+...+.+.|+++.++.++...  ...++..|+.+++.+..+++.++..+.+.. 
T Consensus       277 ~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~v  356 (651)
T 3grl_A          277 VTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNA  356 (651)
T ss_dssp             HHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEE
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccC
Confidence            22   255666666544      234566788899999999998765  567889999999999998888888776542 


Q ss_pred             --------ChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCCc-hhhhHHhh----------CCh---HHHHHhhcCCChhH
Q 005282          320 --------AVRPLIEMLQS-PDSQLKEMSAFALGRLAQDTH-NQAGIAQD----------GGI---LPLLKLLDSKNGSL  376 (704)
Q Consensus       320 --------~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~----------~~~---~~L~~ll~~~~~~v  376 (704)
                              ++..|+.++.+ ....+|.+|+.++..+..+++ .+..+...          ..+   ..+..-+-+.++--
T Consensus       357 p~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~~~~~~~~~s~g~ll~~~l~s~d~~~  436 (651)
T 3grl_A          357 PSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATGNTVSAGQLLCGGLFSTDSLS  436 (651)
T ss_dssp             SSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCCCCCTTSSSCHHHHHHHHHTSSCHHH
T ss_pred             CCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCHHHHHHHHHhcCCcccccCCCCCCcchhhhhhhccCchHH
Confidence                    33334444544 568899999999999886654 33333322          011   12344444566654


Q ss_pred             HHHHHHHHHHccc-CCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHh-hccHHHHHHH
Q 005282          377 QHNAAFALYGLAD-NEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLR-VADRAVKRRV  454 (704)
Q Consensus       377 ~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~-~~~~~v~~~a  454 (704)
                      .-.|+.+|.++-. +++.+..+.+--.-..  .+...+                    ..++.+...+. ..++.++..-
T Consensus       437 ~wfAavil~hll~~n~~~K~~~l~v~l~~~--~ge~~v--------------------tliq~~~~~L~~~~~~ri~vgy  494 (651)
T 3grl_A          437 NWCAAVALAHALQENATQKEQLLRVQLATS--IGNPPV--------------------SLLQQCTNILSQGSKIQTRVGL  494 (651)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHTTCBCCCC--TTCCCC--------------------BHHHHHHHHTTTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhCccccc--CCCCcc--------------------cHHHHHHHHHhcCCchhHHHHH
Confidence            4567778888876 4455555554210000  000000                    11222233332 2344443332


Q ss_pred             HHH-HHhccCCCccceeeecCC-cHHHHHHHHhh----cchhhhhhHHHHHHHHhh
Q 005282          455 TLA-LAHLCAPDDCKTIFIDNN-GLELLLGLLES----TSVKQREESSVALYKLAT  504 (704)
Q Consensus       455 ~~~-L~~l~~~~~~~~~l~~~~-~i~~L~~ll~~----~~~~~~~~a~~~L~~L~~  504 (704)
                      +.. ...|..++..-..|+..+ .++.|+..+..    .++-+|-.++..|+-.-.
T Consensus       495 L~LL~~WL~e~p~AV~dFL~~~s~l~~L~~~i~~~~~~~~~lvqGL~a~LLGi~ye  550 (651)
T 3grl_A          495 LMLLCTWLSNCPIAVTHFLHNSANVPFLTGQIAENLGEEEQLVQGLCALLLGISIY  550 (651)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCChHHHHHHHcCCchHHHHHHHHHhccCcchHHHHHHHHHHHHHHhh
Confidence            222 244566666666666665 58999988753    234567767666664444

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.65  E-value=2.3e-15  Score=166.78  Aligned_cols=416  Identities=15%  Similarity=0.107  Sum_probs=279.8

Q ss_pred             HHHHHHhhhccCCchhhHHHHHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHH
Q 005282           48 RAQIDILNSKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALG  127 (704)
Q Consensus        48 ~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~  127 (704)
                      +.+++.+..++.+  ++..++..++..|..++..-...  .....++|.+..++.+++.          .+|..|+.+|+
T Consensus       163 ~~l~~~l~~l~~d--~~~~VR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~----------~vr~~a~~~l~  228 (588)
T 1b3u_A          163 AELRQYFRNLCSD--DTPMVRRAAASKLGEFAKVLELD--NVKSEIIPMFSNLASDEQD----------SVRLLAVEACV  228 (588)
T ss_dssp             HHHHHHHHHHHTC--SCHHHHHHHHHHHHHHHHTSCHH--HHHHTHHHHHHHHHTCSCH----------HHHTTHHHHHH
T ss_pred             HHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHhcHH--hHHHHHHHHHHHHhcCCcH----------HHHHHHHHHHH
Confidence            3455555555443  34557888888888887531110  1134567888888877654          89999999999


Q ss_pred             hhc-CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCC
Q 005282          128 LLA-VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVD  206 (704)
Q Consensus       128 ~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~  206 (704)
                      .++ ..+.   .......+|.+..++.+.+        |.++..++.+|+.++.....   .......++.+..++++++
T Consensus       229 ~l~~~~~~---~~~~~~~~~~l~~~~~d~~--------~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~  294 (588)
T 1b3u_A          229 NIAQLLPQ---EDLEALVMPTLRQAAEDKS--------WRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLMKDCE  294 (588)
T ss_dssp             HHHHHSCH---HHHHHHTHHHHHHHHTCSS--------HHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHHTCSS
T ss_pred             HHHHhCCH---HHHHHHHHHHHHHHccCCC--------HHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHhCCCc
Confidence            988 2221   1122346677777775433        48999999999999853211   1233466899999999999


Q ss_pred             HHHHHHHHHHHHHhccCCchh-hHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHH
Q 005282          207 VKVQRAAAGALRTLAFKNDEN-KKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGL  285 (704)
Q Consensus       207 ~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~l  285 (704)
                      +.++..++.++..++...+.. +.......+++.+..++.++++.+|..++++|+.++..-.   .......+++.+..+
T Consensus       295 ~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~---~~~~~~~l~p~l~~~  371 (588)
T 1b3u_A          295 AEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILG---KDNTIEHLLPLFLAQ  371 (588)
T ss_dssp             HHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHC---HHHHHHHTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh---HhHHHHHHHHHHHHH
Confidence            999999999999998633221 1112334568889999999999999999999999874311   112234578899999


Q ss_pred             hcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHH
Q 005282          286 LSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPL  365 (704)
Q Consensus       286 l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L  365 (704)
                      +.+++++++..++.++..++......   .....+++.+..++.+.+..++..++.+|..++..-...  ......++.+
T Consensus       372 l~d~~~~Vr~~a~~~l~~l~~~~~~~---~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l  446 (588)
T 1b3u_A          372 LKDECPEVRLNIISNLDCVNEVIGIR---QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE--FFDEKLNSLC  446 (588)
T ss_dssp             HTCSCHHHHHHHHTTCHHHHHHSCHH---HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG--GCCHHHHHHH
T ss_pred             hCCCchHHHHHHHHHHHHHHHhcCHH---HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHH--HHHHHHHHHH
Confidence            99999999999999988887532211   122356888889899999999999999999988532111  1122346778


Q ss_pred             HHhhcCCChhHHHHHHHHHHHcccCCchhhHHHhhCCccccccccccccc-chHHHHHHHHHHHH-----HhhcchhHHH
Q 005282          366 LKLLDSKNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQP-TKDCVARTLKRLEE-----KVHGRVLNHL  439 (704)
Q Consensus       366 ~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~-~~~~~~~~~~~~~~-----~~~~~~~~~L  439 (704)
                      +.++.+.+..+|..|+.++..++..-...  ......++.+.+....... ...+....+..+..     .+...+++.+
T Consensus       447 ~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~--~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l  524 (588)
T 1b3u_A          447 MAWLVDHVYAIREAATSNLKKLVEKFGKE--WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTV  524 (588)
T ss_dssp             HHGGGCSSHHHHHHHHHHHHHHHHHHCHH--HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred             HHHhcCCcHHHHHHHHHHHHHHHHHhCch--hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            88899999999999999999997521111  1122333333322111111 11122222322222     1244688889


Q ss_pred             HHHHhhccHHHHHHHHHHHHhccCCCccceeeecCCcHHHHHHHHhhcchhhhhhHHHHHHHHh
Q 005282          440 LYLLRVADRAVKRRVTLALAHLCAPDDCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLA  503 (704)
Q Consensus       440 ~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~  503 (704)
                      +..+.++++.++..++++|+.++..-+..  +.....++.|.+++.+.++++|..|..++..+.
T Consensus       525 ~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~--~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~  586 (588)
T 1b3u_A          525 LRMAGDPVANVRFNVAKSLQKIGPILDNS--TLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS  586 (588)
T ss_dssp             HHGGGCSCHHHHHHHHHHHHHHGGGSCHH--HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred             HhhCCCCCchHHHHHHHHHHHHHHHhchh--hhHHHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Confidence            99999999999999999999996532211  122345677778778899999999999998764

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.64  E-value=4.5e-15  Score=171.54  Aligned_cols=379  Identities=14%  Similarity=0.107  Sum_probs=261.1

Q ss_pred             hhhHHHHHHHHHHHHHhhcC------hhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChh
Q 005282           62 ETDRAAAKTASHALVEFAKN------EEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPE  134 (704)
Q Consensus        62 ~~~~~~~~~a~~~L~~l~~~------~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~  134 (704)
                      +.+..++..|+..|.+....      ++.+..+     -+.+++.|.+++.          .+|..++.+++.++ .+..
T Consensus        59 ~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~~i-----k~~ll~~l~~~~~----------~vr~~~a~~i~~ia~~~~~  123 (852)
T 4fdd_A           59 SEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFI-----KSECLNNIGDSSP----------LIRATVGILITTIASKGEL  123 (852)
T ss_dssp             TSCHHHHHHHHHHHHHHTTTSGGGCCHHHHHHH-----HHHHHTTTTCSSH----------HHHHHHHHHHHHHHHHTTT
T ss_pred             CCChHHHHHHHHHHHHHHHHccCCCCHHHHHHH-----HHHHHHHHcCCCH----------HHHHHHHHHHHHHHHhcCc
Confidence            34556788888888877542      3333333     5667777776544          89999999999999 2211


Q ss_pred             hHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhh----ccCCcHHHHHHhcCCCHHHH
Q 005282          135 HQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVR----VEDGIPPLVELLKFVDVKVQ  210 (704)
Q Consensus       135 ~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~----~~~~i~~L~~ll~~~~~~~~  210 (704)
                      .    .-.+.++.|++.+.+.+.        .+++.++.+|+.++...+.....-.    ....++.+++.++++++.+|
T Consensus       124 ~----~wp~ll~~L~~~l~~~~~--------~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR  191 (852)
T 4fdd_A          124 Q----NWPDLLPKLCSLLDSEDY--------NTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIR  191 (852)
T ss_dssp             T----TCTTHHHHHHHHHSCSSH--------HHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHH
T ss_pred             c----ccHHHHHHHHHHHcCCCH--------HHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHH
Confidence            0    013457788888876543        8899999999999965443211000    12356777788889999999


Q ss_pred             HHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCC
Q 005282          211 RAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSC  290 (704)
Q Consensus       211 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~  290 (704)
                      ..|+.++..+....+..... .-.+.++.+..++.++++.++..++++|..++...+....... .++++.++..+.+.+
T Consensus       192 ~~A~~aL~~~~~~~~~~~~~-~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l-~~l~~~l~~~~~~~~  269 (852)
T 4fdd_A          192 SHAVACVNQFIISRTQALML-HIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHM-HNIVEYMLQRTQDQD  269 (852)
T ss_dssp             HHHHHHHHTTTTTTCHHHHT-SHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGH-HHHHHHHHHHHTCSS
T ss_pred             HHHHHHHHHHHhcccHHHHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH-HHHHHHHHHHccCCc
Confidence            99999999887533321111 1124678888888899999999999999999976554322222 246788888888888


Q ss_pred             hhHHHHHHHHHHHHhccCCcchHHHHh---cCChHHHHHhh-----------CC-----------CCHHHHHHHHHHHHH
Q 005282          291 SESKREAALLLGQFAAADSNSKVHIVQ---RGAVRPLIEML-----------QS-----------PDSQLKEMSAFALGR  345 (704)
Q Consensus       291 ~~~~~~a~~~L~~l~~~~~~~~~~~~~---~~~i~~L~~ll-----------~~-----------~~~~v~~~a~~~L~~  345 (704)
                      +.++..|+..+..++.. +..+. ...   ..+++.++..+           .+           .+..++..++.+|..
T Consensus       270 ~~vr~~a~e~l~~l~~~-~~~~~-~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~  347 (852)
T 4fdd_A          270 ENVALEACEFWLTLAEQ-PICKD-VLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDV  347 (852)
T ss_dssp             HHHHHHHHHHHHHHTTS-TTHHH-HHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcc-hhHHH-HHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHH
Confidence            99999999999998753 22222 221   13456666666           22           123468889999999


Q ss_pred             hhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcccCCchhhHHHhhCCcccccccccccccchHHHHHHHH
Q 005282          346 LAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLK  425 (704)
Q Consensus       346 l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~  425 (704)
                      ++.....  .+ -...++.+..++.+.++.+|..|+.+|++++.....  .+ . ..                       
T Consensus       348 la~~~~~--~~-~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~--~~-~-~~-----------------------  397 (852)
T 4fdd_A          348 LANVYRD--EL-LPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQ--GM-I-PY-----------------------  397 (852)
T ss_dssp             HHHHHGG--GG-HHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHH--HH-G-GG-----------------------
T ss_pred             HHHhccH--HH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchH--HH-H-HH-----------------------
Confidence            8864321  11 123556677888889999999999999999864321  11 1 00                       


Q ss_pred             HHHHHhhcchhHHHHHHHhhccHHHHHHHHHHHHhccCCCcc-ceeeecCCcHHHHHHHHhhcchhhhhhHHHHHHHHhh
Q 005282          426 RLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPDDC-KTIFIDNNGLELLLGLLESTSVKQREESSVALYKLAT  504 (704)
Q Consensus       426 ~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~-~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~  504 (704)
                            ...+++.++..+.+.++.++..|+++|++++..-.. .....-.+.++.|++.+.++++.+|..|+++|.+++.
T Consensus       398 ------l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~  471 (852)
T 4fdd_A          398 ------LPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEE  471 (852)
T ss_dssp             ------HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             ------HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence                  123677888999999999999999999999652111 0001113568888888888899999999999999998


Q ss_pred             hcC
Q 005282          505 KAT  507 (704)
Q Consensus       505 ~~~  507 (704)
                      ...
T Consensus       472 ~~~  474 (852)
T 4fdd_A          472 EAC  474 (852)
T ss_dssp             HHG
T ss_pred             Hhh
Confidence            764

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.62  E-value=9.7e-15  Score=168.75  Aligned_cols=382  Identities=15%  Similarity=0.087  Sum_probs=258.2

Q ss_pred             hHHHHHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHHHH--
Q 005282           64 DRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQIIV--  140 (704)
Q Consensus        64 ~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~~--  140 (704)
                      +..++..++.++..++..... .  ...+.++.|++.+.+++.          .++..++.+|+.++ ..+.....-.  
T Consensus       103 ~~~vr~~~a~~i~~ia~~~~~-~--~wp~ll~~L~~~l~~~~~----------~~r~~al~~L~~i~~~~~~~~~~~~~~  169 (852)
T 4fdd_A          103 SPLIRATVGILITTIASKGEL-Q--NWPDLLPKLCSLLDSEDY----------NTCEGAFGALQKICEDSAEILDSDVLD  169 (852)
T ss_dssp             SHHHHHHHHHHHHHHHHHTTT-T--TCTTHHHHHHHHHSCSSH----------HHHHHHHHHHHHHHHHHTTHHHHCSSS
T ss_pred             CHHHHHHHHHHHHHHHHhcCc-c--ccHHHHHHHHHHHcCCCH----------HHHHHHHHHHHHHHHHhHHHhchhhhc
Confidence            345778888888888762100 0  124568999999988754          89999999999999 3332211000  


Q ss_pred             --HcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHH
Q 005282          141 --DTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALR  218 (704)
Q Consensus       141 --~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~  218 (704)
                        -.+.++.+++.+.+.+        +.++..|+++|.++....+.. ..-.-.+.++.+..++.++++.++..++++|.
T Consensus       170 ~~~~~il~~l~~~l~~~~--------~~vR~~A~~aL~~~~~~~~~~-~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~  240 (852)
T 4fdd_A          170 RPLNIMIPKFLQFFKHSS--------PKIRSHAVACVNQFIISRTQA-LMLHIDSFIENLFALAGDEEPEVRKNVCRALV  240 (852)
T ss_dssp             SCHHHHHHHHTTTTTCSS--------HHHHHHHHHHHHTTTTTTCHH-HHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHhcCCC--------HHHHHHHHHHHHHHHhcccHH-HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence              0123455555555433        389999999999887543321 11112356788888899999999999999999


Q ss_pred             HhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHH---cCCHHHHHHHh---------
Q 005282          219 TLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVIL---AGALQPVIGLL---------  286 (704)
Q Consensus       219 ~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~---~~~l~~L~~ll---------  286 (704)
                      .++...++.-.... .++++.++..+.+.++.++..|+..+..++... .... ...   ...++.++..+         
T Consensus       241 ~l~~~~~~~~~~~l-~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~-~~~~-~~~~~~~~l~p~ll~~l~~~e~d~~~  317 (852)
T 4fdd_A          241 MLLEVRMDRLLPHM-HNIVEYMLQRTQDQDENVALEACEFWLTLAEQP-ICKD-VLVRHLPKLIPVLVNGMKYSDIDIIL  317 (852)
T ss_dssp             HHHHHCHHHHGGGH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTST-THHH-HHTTTHHHHHHHHHHHTSCCHHHHHH
T ss_pred             HHHHhCHHHHHHHH-HHHHHHHHHHccCCcHHHHHHHHHHHHHHhcch-hHHH-HHHHHHHHHHHHHHHHcCCcHhHHHH
Confidence            99875544322222 246888888889999999999999999998652 2222 221   13456666665         


Q ss_pred             --cC-----------CChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchh
Q 005282          287 --SS-----------SCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQ  353 (704)
Q Consensus       287 --~~-----------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~  353 (704)
                        .+           .++.++..++.+|..++...++.   +. ..+++.+...+.++++.+|..|+++|++++.+....
T Consensus       318 ~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~---~~-~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~  393 (852)
T 4fdd_A          318 LKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDE---LL-PHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQG  393 (852)
T ss_dssp             HHC------------CCCCHHHHHHHHHHHHHHHHGGG---GH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHH
T ss_pred             hcCCcccccccccccccchHHHHHHHHHHHHHHhccHH---HH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHH
Confidence              22           23456888899998887543321   11 235778888888899999999999999999876543


Q ss_pred             hhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcccCCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhc
Q 005282          354 AGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHG  433 (704)
Q Consensus       354 ~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (704)
                      ..-.-.+.++.++.++.+.++.||..++++|++++..-.      . .....                         ...
T Consensus       394 ~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~------~-~~~~~-------------------------~~~  441 (852)
T 4fdd_A          394 MIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVV------S-QPPDT-------------------------YLK  441 (852)
T ss_dssp             HGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHH------H-SCTTT-------------------------THH
T ss_pred             HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc------c-chHHH-------------------------HHH
Confidence            333334667889999999999999999999999864210      0 00000                         012


Q ss_pred             chhHHHHHHHhhccHHHHHHHHHHHHhccCCCccceeeecCCcHHHHHHHHhhcchhhhhhHHHHHHHHhhhc
Q 005282          434 RVLNHLLYLLRVADRAVKRRVTLALAHLCAPDDCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLATKA  506 (704)
Q Consensus       434 ~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~  506 (704)
                      .+++.++..+.+.++.++..|+++|.+++........-.-.+.++.|+.++...+......+..++..++...
T Consensus       442 ~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~  514 (852)
T 4fdd_A          442 PLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSV  514 (852)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHh
Confidence            3667788888888999999999999999653222111112356777888887665555566777888877654

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.62  E-value=3.3e-14  Score=157.47  Aligned_cols=370  Identities=14%  Similarity=0.079  Sum_probs=264.2

Q ss_pred             hhHHHHHHHHHHHHHhhcC-hhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CCh-hhHHHH
Q 005282           63 TDRAAAKTASHALVEFAKN-EEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKP-EHQQII  139 (704)
Q Consensus        63 ~~~~~~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~-~~~~~~  139 (704)
                      ++..++..|..+|.+++.. +..  . ....+++.+..+.+++..          .+|..|+.+++.++ ..+ ..+   
T Consensus        99 ~~~~vR~~a~~~L~~l~~~~~~~--~-~~~~l~~~l~~l~~~~~~----------~~R~~a~~~l~~~~~~~~~~~~---  162 (588)
T 1b3u_A           99 EETVVRDKAVESLRAISHEHSPS--D-LEAHFVPLVKRLAGGDWF----------TSRTSACGLFSVCYPRVSSAVK---  162 (588)
T ss_dssp             SCHHHHHHHHHHHHHHHTTSCHH--H-HHHTHHHHHHHHHTCSSH----------HHHHHHGGGHHHHTTTSCHHHH---
T ss_pred             chHHHHHHHHHHHHHHHHHCCHH--H-HHHHHHHHHHHHhcCCCc----------HHHHHHHHHHHHHHHhcCHHHH---
Confidence            3455788888888888763 211  1 122346667677666543          88999999999988 322 222   


Q ss_pred             HHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHH
Q 005282          140 VDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRT  219 (704)
Q Consensus       140 ~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~  219 (704)
                        ...++.+..++.+.+.        .++..++.+|+.++...+.   .......+|.+..+++++++.++..|+.+|..
T Consensus       163 --~~l~~~l~~l~~d~~~--------~VR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~  229 (588)
T 1b3u_A          163 --AELRQYFRNLCSDDTP--------MVRRAAASKLGEFAKVLEL---DNVKSEIIPMFSNLASDEQDSVRLLAVEACVN  229 (588)
T ss_dssp             --HHHHHHHHHHHTCSCH--------HHHHHHHHHHHHHHHTSCH---HHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHH
T ss_pred             --HHHHHHHHHHhCCCCH--------HHHHHHHHHHHHHHHHhcH---HhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence              2345677777765543        9999999999999854332   12345678899999999999999999999999


Q ss_pred             hccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHH
Q 005282          220 LAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAAL  299 (704)
Q Consensus       220 l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~  299 (704)
                      ++...+..   .....+++.+..++.++++.+|..++.+|+.++...+   .......+++.+..++.++++.++..++.
T Consensus       230 l~~~~~~~---~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~  303 (588)
T 1b3u_A          230 IAQLLPQE---DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVG---PEITKTDLVPAFQNLMKDCEAEVRAAASH  303 (588)
T ss_dssp             HHHHSCHH---HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHC---HHHHHHTHHHHHHHHHTCSSHHHHHHHHH
T ss_pred             HHHhCCHH---HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhC---cccchhHHHHHHHHHhCCCcHHHHHHHHH
Confidence            98533221   1223468888899999999999999999999985321   12234567899999999999999999999


Q ss_pred             HHHHHhccCCcc-hHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHH
Q 005282          300 LLGQFAAADSNS-KVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQH  378 (704)
Q Consensus       300 ~L~~l~~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~  378 (704)
                      +|..++...... ........+++.+..++.++++.+|..++++|+.++..-...  ......++.+..++.+.++++|.
T Consensus       304 ~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~l~p~l~~~l~d~~~~Vr~  381 (588)
T 1b3u_A          304 KVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKD--NTIEHLLPLFLAQLKDECPEVRL  381 (588)
T ss_dssp             HHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHH--HHHHHTHHHHHHHHTCSCHHHHH
T ss_pred             HHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHh--HHHHHHHHHHHHHhCCCchHHHH
Confidence            999998644322 111233567888999999999999999999999998542221  12234677788999999999999


Q ss_pred             HHHHHHHHcccCCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHHHHHHH
Q 005282          379 NAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLAL  458 (704)
Q Consensus       379 ~a~~~L~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L  458 (704)
                      .++.+|..+...-...                                   .....+++.+..++.+.++.++..++.+|
T Consensus       382 ~a~~~l~~l~~~~~~~-----------------------------------~~~~~~lp~l~~~~~d~~~~vr~~~~~~l  426 (588)
T 1b3u_A          382 NIISNLDCVNEVIGIR-----------------------------------QLSQSLLPAIVELAEDAKWRVRLAIIEYM  426 (588)
T ss_dssp             HHHTTCHHHHHHSCHH-----------------------------------HHHHHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHH-----------------------------------HHHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence            9998888775311000                                   00112566777788888899999999999


Q ss_pred             HhccCCCccceeeecCCcHHHHHHHHhhcchhhhhhHHHHHHHHhhhc
Q 005282          459 AHLCAPDDCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLATKA  506 (704)
Q Consensus       459 ~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~  506 (704)
                      ..++..-...  +.....++.+..++.++++.+|..|+.++..++...
T Consensus       427 ~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~  472 (588)
T 1b3u_A          427 PLLAGQLGVE--FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKF  472 (588)
T ss_dssp             HHHHHHHCGG--GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCHH--HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHh
Confidence            9885421111  122346788888888888999999999999998754

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.57  E-value=2.2e-13  Score=145.88  Aligned_cols=391  Identities=14%  Similarity=0.072  Sum_probs=252.6

Q ss_pred             HHHHhhhccCCchhhHHHHHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhh
Q 005282           50 QIDILNSKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLL  129 (704)
Q Consensus        50 l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l  129 (704)
                      +...|..+++.+   ...+.+|-..|.++..+.       ..+.+..|+.++.+.+.        ++.+|..|+..|.++
T Consensus         3 l~~~L~~~~s~d---~~~r~~Ae~~L~~~~~~~-------~~~~~~~L~~il~~~~~--------~~~vR~~a~~~Lk~~   64 (462)
T 1ibr_B            3 LITILEKTVSPD---RLELEAAQKFLERAAVEN-------LPTFLVELSRVLANPGN--------SQVARVAAGLQIKNS   64 (462)
T ss_dssp             HHHHHHHTTCSC---HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHCTTS--------CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCC---HHHHHHHHHHHHHHHhhC-------hHHHHHHHHHHHHcCCC--------ChHHHHHHHHHHHHh
Confidence            344555555543   345677777777654320       12246778888877643        468999999999999


Q ss_pred             c-CChhhHHH-H----------HHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHH
Q 005282          130 A-VKPEHQQI-I----------VDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPP  197 (704)
Q Consensus       130 ~-~~~~~~~~-~----------~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~  197 (704)
                      . ........ +          ....+-..++..+.+.+.        .+ ..++.+++.++.......   .-.+.++.
T Consensus        65 i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~--------~v-~~~~~~i~~ia~~~~~~~---~w~~ll~~  132 (462)
T 1ibr_B           65 LTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETY--------RP-SSASQCVAGIACAEIPVN---QWPELIPQ  132 (462)
T ss_dssp             HCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCS--------SS-CSHHHHHHHHHHHHGGGT---CCTTHHHH
T ss_pred             ccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCCc--------hh-hHHHHHHHHHHHHhcccc---ccHHHHHH
Confidence            7 22111000 0          011123446666665543        55 678888888885321111   12567899


Q ss_pred             HHHHhcCC--CHHHHHHHHHHHHHhccCC-chhhHHhHhcCChHHHHHhhcCC--CHHHHHHHHHHHHHHhcCChhhHH-
Q 005282          198 LVELLKFV--DVKVQRAAAGALRTLAFKN-DENKKLIVECNALPTLVLMLRSE--DASVHFEAVGVIGNLVHSSPSIKK-  271 (704)
Q Consensus       198 L~~ll~~~--~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~-  271 (704)
                      |+..+.++  ++.++..++.+|..++... +...... -..+++.++..+.++  ++.+|..|+++++++...-..... 
T Consensus       133 L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~-~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~  211 (462)
T 1ibr_B          133 LVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDK-SNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDK  211 (462)
T ss_dssp             HHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGG-HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTS
T ss_pred             HHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            99999988  9999999999999998632 2211111 123678888889887  799999999999997643221110 


Q ss_pred             HHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCc
Q 005282          272 EVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTH  351 (704)
Q Consensus       272 ~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  351 (704)
                      .....-+++.+...+.+.+.+++..++.+|..++...+......+..++++.++..+++.++.++..++..+..++....
T Consensus       212 ~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~  291 (462)
T 1ibr_B          212 ESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEM  291 (462)
T ss_dssp             HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHH
Confidence            00111135666677788889999999999999986554322212222667788888888899999999999998885421


Q ss_pred             ------------------hhhhHHh---hCChHHHHHhhcC-------CChhHHHHHHHHHHHcccCCchhhHHHhhCCc
Q 005282          352 ------------------NQAGIAQ---DGGILPLLKLLDS-------KNGSLQHNAAFALYGLADNEDNVADLVRVGGV  403 (704)
Q Consensus       352 ------------------~~~~~~~---~~~~~~L~~ll~~-------~~~~v~~~a~~~L~~l~~~~~~~~~l~~~g~i  403 (704)
                                        ....+.+   ...++.+++.+..       .+..++..|+.+|..++..-.  ..+      
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~--~~~------  363 (462)
T 1ibr_B          292 DLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE--DDI------  363 (462)
T ss_dssp             HHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT--TTH------
T ss_pred             HHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc--HHH------
Confidence                              0011111   2334555555532       234678888888877754211  011      


Q ss_pred             ccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHHHHHHHHhccCCCccc-eeeecCCcHHHHHH
Q 005282          404 QKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPDDCK-TIFIDNNGLELLLG  482 (704)
Q Consensus       404 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~-~~l~~~~~i~~L~~  482 (704)
                                                  ...+++.+...+.+.++.++..|+.+|+.++...... ..-.-...++.|+.
T Consensus       364 ----------------------------~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~  415 (462)
T 1ibr_B          364 ----------------------------VPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIE  415 (462)
T ss_dssp             ----------------------------HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHH
T ss_pred             ----------------------------HHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH
Confidence                                        0124556677778899999999999999997643211 00011468999999


Q ss_pred             HHhhcchhhhhhHHHHHHHHhhhcC
Q 005282          483 LLESTSVKQREESSVALYKLATKAT  507 (704)
Q Consensus       483 ll~~~~~~~~~~a~~~L~~L~~~~~  507 (704)
                      ++.++++.+|..|+++|.+++...+
T Consensus       416 ~l~d~~~~Vr~~a~~~l~~~~~~~~  440 (462)
T 1ibr_B          416 LMKDPSVVVRDTAAWTVGRICELLP  440 (462)
T ss_dssp             GGGCSCHHHHHHHHHHHHHHHHHGG
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHhcc
Confidence            9999999999999999999998764

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.54  E-value=4.5e-13  Score=147.21  Aligned_cols=354  Identities=16%  Similarity=0.117  Sum_probs=249.5

Q ss_pred             hhhHHHHHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHHHH
Q 005282           62 ETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQIIV  140 (704)
Q Consensus        62 ~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~~  140 (704)
                      +.++.++.-|+++|.++. .++....+     ++.+.+++.+.++          .||..|+.++.++. .+|+...   
T Consensus        97 ~~n~~ir~~AL~~L~~i~-~~~~~~~l-----~~~l~~~L~d~~~----------~VRk~A~~al~~i~~~~p~~~~---  157 (591)
T 2vgl_B           97 DPNPLIRALAVRTMGCIR-VDKITEYL-----CEPLRKCLKDEDP----------YVRKTAAVCVAKLHDINAQMVE---  157 (591)
T ss_dssp             SSSHHHHHHHHHHHHTCC-SGGGHHHH-----HHHHHHHSSCSCH----------HHHHHHHHHHHHHHHSSCCCHH---
T ss_pred             CCCHHHHHHHHHHHHcCC-hHHHHHHH-----HHHHHHHcCCCCh----------HHHHHHHHHHHHHHhhChhhcc---
Confidence            456678888888888875 45555554     6889999987754          99999999999999 6666432   


Q ss_pred             HcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHh
Q 005282          141 DTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTL  220 (704)
Q Consensus       141 ~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l  220 (704)
                      +.+.++.+..+|.+.+.        .++..|+.+|..++..++.........+.++.|+..+.+.++..+...+.++..+
T Consensus       158 ~~~~~~~l~~lL~d~d~--------~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l  229 (591)
T 2vgl_B          158 DQGFLDSLRDLIADSNP--------MVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNY  229 (591)
T ss_dssp             HHHHHHHHHHTTSCSCH--------HHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTS
T ss_pred             cccHHHHHHHHhCCCCh--------hHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHh
Confidence            34677889999976554        9999999999999976654321112233466777888888899999999999888


Q ss_pred             ccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcC---ChhhHHHHHHcCCHHHHHHHhcCCChhHHHHH
Q 005282          221 AFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHS---SPSIKKEVILAGALQPVIGLLSSSCSESKREA  297 (704)
Q Consensus       221 ~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~---~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a  297 (704)
                      +...+...     ...++.+..++++.++.|+..|++++..+...   +++....+ -..+.+.|+.++. +++.++..+
T Consensus       230 ~~~~~~~~-----~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~-~~~~~~~L~~L~~-~d~~vr~~a  302 (591)
T 2vgl_B          230 NPKDDREA-----QSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNML-LKKLAPPLVTLLS-GEPEVQYVA  302 (591)
T ss_dssp             CCCSHHHH-----HHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHH-HHHTHHHHHHHTT-SCHHHHHHH
T ss_pred             CCCChHHH-----HHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHH-HHHHHHHHHHHhc-CCccHHHHH
Confidence            74332222     23467788888999999999999999998742   23333322 2345677777664 788999999


Q ss_pred             HHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHH
Q 005282          298 ALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQ  377 (704)
Q Consensus       298 ~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~  377 (704)
                      +.+|..++..+++....     .+..+. .+.+.+..++..++.+|.+++.... ..     ..++.|...+.+.+.+++
T Consensus       303 L~~l~~i~~~~p~~~~~-----~~~~~~-~~~~d~~~Ir~~al~~L~~l~~~~n-v~-----~iv~~L~~~l~~~d~~~r  370 (591)
T 2vgl_B          303 LRNINLIVQKRPEILKQ-----EIKVFF-VKYNDPIYVKLEKLDIMIRLASQAN-IA-----QVLAELKEYATEVDVDFV  370 (591)
T ss_dssp             HHHHHHHHHHCCSTTTT-----CTTTTS-CCTTSCHHHHHHHHHHHHHTCCSST-HH-----HHHHHHHHHTTSSCHHHH
T ss_pred             HHHHHHHHHhChHHHHH-----HHHhhe-eccCChHHHHHHHHHHHHHHCChhh-HH-----HHHHHHHHHHhcCCHHHH
Confidence            99999998765543211     122221 1224458899999999999885543 22     234567788888899999


Q ss_pred             HHHHHHHHHcccCC-chhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHHHHH
Q 005282          378 HNAAFALYGLADNE-DNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTL  456 (704)
Q Consensus       378 ~~a~~~L~~l~~~~-~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~  456 (704)
                      ..++++++.++..- ....                                      ..++.|+.++......+...+..
T Consensus       371 ~~~v~aI~~la~~~~~~~~--------------------------------------~~v~~Ll~ll~~~~~~v~~e~i~  412 (591)
T 2vgl_B          371 RKAVRAIGRCAIKVEQSAE--------------------------------------RCVSTLLDLIQTKVNYVVQEAIV  412 (591)
T ss_dssp             HHHHHHHHHHHTTCHHHHH--------------------------------------HHHHHHHHHHHTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhChhHHH--------------------------------------HHHHHHHHHHcccchHHHHHHHH
Confidence            99999999997532 1111                                      14556778888888888888888


Q ss_pred             HHHhccC-CCccceeeecCCcHHHHHHHHhh-cchhhhhhHHHHHHHHhh
Q 005282          457 ALAHLCA-PDDCKTIFIDNNGLELLLGLLES-TSVKQREESSVALYKLAT  504 (704)
Q Consensus       457 ~L~~l~~-~~~~~~~l~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~L~~  504 (704)
                      ++.++.. .+..     ...+++.|.+.+.+ ..+.++..++|+|+..+.
T Consensus       413 ~l~~ii~~~p~~-----~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~  457 (591)
T 2vgl_B          413 VIRDIFRKYPNK-----YESIIATLCENLDSLDEPDARAAMIWIVGEYAE  457 (591)
T ss_dssp             HHHHHHHHSCSS-----CCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCT
T ss_pred             HHHHHHHHCcch-----HHHHHHHHHHHHHhccCHHHHHHHHHHHHcccc
Confidence            8888743 2221     24678888888764 667777777777776544

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.54  E-value=3.8e-13  Score=147.80  Aligned_cols=356  Identities=17%  Similarity=0.142  Sum_probs=252.5

Q ss_pred             HHHHHHHHHHHHHhhc-ChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHcC
Q 005282           65 RAAAKTASHALVEFAK-NEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTG  143 (704)
Q Consensus        65 ~~~~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g  143 (704)
                      ...++-+.-.+..++. +++...     -+++.+.+-|.++++          .+|..|+.+|+++. .++....+    
T Consensus        63 ~~~Krl~yl~l~~~~~~~~e~~~-----l~~n~l~kdL~~~n~----------~ir~~AL~~L~~i~-~~~~~~~l----  122 (591)
T 2vgl_B           63 LELKKLVYLYLMNYAKSQPDMAI-----MAVNSFVKDCEDPNP----------LIRALAVRTMGCIR-VDKITEYL----  122 (591)
T ss_dssp             HHHHHHHHHHHHHHHHHSHHHHH-----TTHHHHGGGSSSSSH----------HHHHHHHHHHHTCC-SGGGHHHH----
T ss_pred             HHHHHHHHHHHHHHcccCchHHH-----HHHHHHHHHcCCCCH----------HHHHHHHHHHHcCC-hHHHHHHH----
Confidence            3445555555565555 444422     236778888887754          89999999999997 44444333    


Q ss_pred             CcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccC
Q 005282          144 ALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFK  223 (704)
Q Consensus       144 ~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~  223 (704)
                       ++.+.+++.+.+.        .++..|+.++.+++..+++.   +...+.++.+..+|.++++.++..|+.+|..++..
T Consensus       123 -~~~l~~~L~d~~~--------~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~  190 (591)
T 2vgl_B          123 -CEPLRKCLKDEDP--------YVRKTAAVCVAKLHDINAQM---VEDQGFLDSLRDLIADSNPMVVANAVAALSEISES  190 (591)
T ss_dssp             -HHHHHHHSSCSCH--------HHHHHHHHHHHHHHHSSCCC---HHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTS
T ss_pred             -HHHHHHHcCCCCh--------HHHHHHHHHHHHHHhhChhh---cccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhh
Confidence             4678888876544        99999999999999766542   23356789999999999999999999999999975


Q ss_pred             CchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHH
Q 005282          224 NDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQ  303 (704)
Q Consensus       224 ~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~  303 (704)
                      +++........+.+..|+..+.+.++..+...+.++..++..++...     ..+++.+..++++.++.++..|++++..
T Consensus       191 ~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~-----~~~l~~l~~~l~~~~~~V~~ea~~~i~~  265 (591)
T 2vgl_B          191 HPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREA-----QSICERVTPRLSHANSAVVLSAVKVLMK  265 (591)
T ss_dssp             CCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHH-----HHHHHHHTTCSCSSTTHHHHHHHHHHHH
T ss_pred             CCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHH-----HHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence            55332111122346677777778899999999999988875443322     2457778888899999999999999999


Q ss_pred             Hhcc---CCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHH
Q 005282          304 FAAA---DSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNA  380 (704)
Q Consensus       304 l~~~---~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a  380 (704)
                      +...   +++....+ -.++.+.|+.++ ++++.+|..|+.+|..++...+..   +.. .+..+. .+.+.+..++..+
T Consensus       266 l~~~~~~~~~~~~~~-~~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p~~---~~~-~~~~~~-~~~~d~~~Ir~~a  338 (591)
T 2vgl_B          266 FLELLPKDSDYYNML-LKKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRPEI---LKQ-EIKVFF-VKYNDPIYVKLEK  338 (591)
T ss_dssp             SCCSCCBTTBSHHHH-HHHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCCST---TTT-CTTTTS-CCTTSCHHHHHHH
T ss_pred             HhhccCCCHHHHHHH-HHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhChHH---HHH-HHHhhe-eccCChHHHHHHH
Confidence            8632   33333322 245667777665 488999999999999998643221   111 122222 2224458999999


Q ss_pred             HHHHHHcccCCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHHHHHHHHh
Q 005282          381 AFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAH  460 (704)
Q Consensus       381 ~~~L~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~  460 (704)
                      +.+|..++.. ++...+                                      ++.|..++.+.+.+++..++++|+.
T Consensus       339 l~~L~~l~~~-~nv~~i--------------------------------------v~~L~~~l~~~d~~~r~~~v~aI~~  379 (591)
T 2vgl_B          339 LDIMIRLASQ-ANIAQV--------------------------------------LAELKEYATEVDVDFVRKAVRAIGR  379 (591)
T ss_dssp             HHHHHHTCCS-STHHHH--------------------------------------HHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCh-hhHHHH--------------------------------------HHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            9999998743 333332                                      3356677788899999999999999


Q ss_pred             ccCCCccceeeecCCcHHHHHHHHhhcchhhhhhHHHHHHHHhhhcC
Q 005282          461 LCAPDDCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLATKAT  507 (704)
Q Consensus       461 l~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~  507 (704)
                      ++..-..    .....++.|++++......++..+..++.++.+..+
T Consensus       380 la~~~~~----~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p  422 (591)
T 2vgl_B          380 CAIKVEQ----SAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYP  422 (591)
T ss_dssp             HHTTCHH----HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHhChh----HHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCc
Confidence            9764321    123568899999998888888889999999987653

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.52  E-value=1.7e-12  Score=128.66  Aligned_cols=258  Identities=17%  Similarity=0.144  Sum_probs=197.9

Q ss_pred             HHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHH
Q 005282          139 IVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALR  218 (704)
Q Consensus       139 ~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~  218 (704)
                      ..+.+.++.|+..|.+++.        .++..++++|+++..           .+.++.|+.++.++++.++..|+++|.
T Consensus        19 ~~~~~~i~~L~~~L~~~~~--------~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~   79 (280)
T 1oyz_A           19 QCKKLNDDELFRLLDDHNS--------LKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILG   79 (280)
T ss_dssp             HHHTSCHHHHHHHTTCSSH--------HHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHcCCH--------HHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            3456789999999987654        899999999999862           235788999999999999999999999


Q ss_pred             HhccCCchhhHHhHhcCChHHHH-HhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHH
Q 005282          219 TLAFKNDENKKLIVECNALPTLV-LMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREA  297 (704)
Q Consensus       219 ~l~~~~~~~~~~~~~~~~i~~L~-~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a  297 (704)
                      .+.. .+....     ..++.+. .+++++++.++..++++|+++...++...     ..+++.|+..+.++++.++..+
T Consensus        80 ~l~~-~~~~~~-----~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~-----~~~~~~L~~~l~d~~~~vR~~a  148 (280)
T 1oyz_A           80 QIKI-CKKCED-----NVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYS-----PKIVEQSQITAFDKSTNVRRAT  148 (280)
T ss_dssp             HSCC-CTTTHH-----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHTTCSCHHHHHHH
T ss_pred             Hhcc-ccccch-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCccc-----HHHHHHHHHHhhCCCHHHHHHH
Confidence            9974 222111     1234444 34578899999999999999975433222     2357889999999999999999


Q ss_pred             HHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHH
Q 005282          298 ALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQ  377 (704)
Q Consensus       298 ~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~  377 (704)
                      +.+|+++..           .+.++.|+.++.++++.++..++++|+.+....        ...++.|+.++.+.++.++
T Consensus       149 ~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~--------~~~~~~L~~~l~d~~~~vR  209 (280)
T 1oyz_A          149 AFAISVIND-----------KATIPLLINLLKDPNGDVRNWAAFAININKYDN--------SDIRDCFVEMLQDKNEEVR  209 (280)
T ss_dssp             HHHHHTC--------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC--------HHHHHHHHHHTTCSCHHHH
T ss_pred             HHHHHhcCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc--------HHHHHHHHHHhcCCCHHHH
Confidence            999998742           247999999999999999999999999985332        1356788999999999999


Q ss_pred             HHHHHHHHHcccCCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHHHHHH
Q 005282          378 HNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLA  457 (704)
Q Consensus       378 ~~a~~~L~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~  457 (704)
                      ..|+.+|..+.. +                                          ..++.|+..+.+++  ++..++.+
T Consensus       210 ~~A~~aL~~~~~-~------------------------------------------~~~~~L~~~l~d~~--vr~~a~~a  244 (280)
T 1oyz_A          210 IEAIIGLSYRKD-K------------------------------------------RVLSVLCDELKKNT--VYDDIIEA  244 (280)
T ss_dssp             HHHHHHHHHTTC-G------------------------------------------GGHHHHHHHHTSSS--CCHHHHHH
T ss_pred             HHHHHHHHHhCC-H------------------------------------------hhHHHHHHHhcCcc--HHHHHHHH
Confidence            999999999841 1                                          13455667776544  88899999


Q ss_pred             HHhccCCCccceeeecCCcHHHHHHHHhh-cchhhhhhHHHHHH
Q 005282          458 LAHLCAPDDCKTIFIDNNGLELLLGLLES-TSVKQREESSVALY  500 (704)
Q Consensus       458 L~~l~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~  500 (704)
                      |+.+..          ...++.|.+++.+ .++++...+..+|.
T Consensus       245 L~~i~~----------~~~~~~L~~~l~~~~~~~~~~~~~~~l~  278 (280)
T 1oyz_A          245 AGELGD----------KTLLPVLDTMLYKFDDNEIITSAIDKLK  278 (280)
T ss_dssp             HHHHCC----------GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred             HHhcCc----------hhhhHHHHHHHhcCCCcHHHHHHHHHhh
Confidence            999843          2678999999975 66677777766654

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.47  E-value=6.3e-12  Score=124.54  Aligned_cols=229  Identities=14%  Similarity=0.091  Sum_probs=181.4

Q ss_pred             ccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhH
Q 005282          191 VEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIK  270 (704)
Q Consensus       191 ~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~  270 (704)
                      ..+.++.|+..|.++++.++..|+++|.++..           .+.++.|+.++.++++.++..++++|+.+....... 
T Consensus        21 ~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~-   88 (280)
T 1oyz_A           21 KKLNDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCE-   88 (280)
T ss_dssp             HTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTH-
T ss_pred             HHhhHHHHHHHHHcCCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccc-
Confidence            35678999999999999999999999999872           235788999999999999999999999986432211 


Q ss_pred             HHHHHcCCHHHHH-HHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcC
Q 005282          271 KEVILAGALQPVI-GLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQD  349 (704)
Q Consensus       271 ~~~~~~~~l~~L~-~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~  349 (704)
                      .     ..++.+. .++.++++.++..++++|+++...++...     ..+++.|...+.++++.++..++++|+++.. 
T Consensus        89 ~-----~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~-----~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~-  157 (280)
T 1oyz_A           89 D-----NVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYS-----PKIVEQSQITAFDKSTNVRRATAFAISVIND-  157 (280)
T ss_dssp             H-----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHTTCSCHHHHHHHHHHHHTC---
T ss_pred             h-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCccc-----HHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-
Confidence            1     1234444 34578889999999999999975333221     2458899999999999999999999998754 


Q ss_pred             CchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcccCCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHH
Q 005282          350 THNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEE  429 (704)
Q Consensus       350 ~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~  429 (704)
                               .+.++.|+.++.+.++.++..++++|..+....+                                     
T Consensus       158 ---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~-------------------------------------  191 (280)
T 1oyz_A          158 ---------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS-------------------------------------  191 (280)
T ss_dssp             ----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH-------------------------------------
T ss_pred             ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH-------------------------------------
Confidence                     2478899999999999999999999998742111                                     


Q ss_pred             HhhcchhHHHHHHHhhccHHHHHHHHHHHHhccCCCccceeeecCCcHHHHHHHHhhcchhhhhhHHHHHHHHhh
Q 005282          430 KVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPDDCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLAT  504 (704)
Q Consensus       430 ~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~  504 (704)
                          ..++.|+.++.++++.++..|+++|+++.          ....++.|+.++.+  ++++..|+.+|..+..
T Consensus       192 ----~~~~~L~~~l~d~~~~vR~~A~~aL~~~~----------~~~~~~~L~~~l~d--~~vr~~a~~aL~~i~~  250 (280)
T 1oyz_A          192 ----DIRDCFVEMLQDKNEEVRIEAIIGLSYRK----------DKRVLSVLCDELKK--NTVYDDIIEAAGELGD  250 (280)
T ss_dssp             ----HHHHHHHHHTTCSCHHHHHHHHHHHHHTT----------CGGGHHHHHHHHTS--SSCCHHHHHHHHHHCC
T ss_pred             ----HHHHHHHHHhcCCCHHHHHHHHHHHHHhC----------CHhhHHHHHHHhcC--ccHHHHHHHHHHhcCc
Confidence                13456788888999999999999999995          34689999999976  4499999999998854

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.46  E-value=8.5e-12  Score=137.50  Aligned_cols=133  Identities=20%  Similarity=0.241  Sum_probs=97.3

Q ss_pred             hhHHHHHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHHHHH
Q 005282           63 TDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQIIVD  141 (704)
Q Consensus        63 ~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~~~  141 (704)
                      .++.++..|+++|.++.. ++....+     ++.+..+|.+.++          .||..|+.++.++. .+|+...    
T Consensus       119 ~n~~vr~lAL~~L~~i~~-~~~~~~l-----~~~l~~~L~~~~~----------~VRk~A~~al~~l~~~~p~~v~----  178 (618)
T 1w63_A          119 STQFVQGLALCTLGCMGS-SEMCRDL-----AGEVEKLLKTSNS----------YLRKKAALCAVHVIRKVPELME----  178 (618)
T ss_dssp             SSSHHHHHHHHHHHHHCC-HHHHHHH-----HHHHHHHHHSCCH----------HHHHHHHHHHHHHHHHCGGGGG----
T ss_pred             CCHhHHHHHHHHHHhcCC-HHHHHHH-----HHHHHHHHcCCCH----------HHHHHHHHHHHHHHHHChHHHH----
Confidence            445677888888888874 4444433     7888999988765          99999999999999 6776532    


Q ss_pred             cCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcC---------------CC
Q 005282          142 TGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKF---------------VD  206 (704)
Q Consensus       142 ~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~---------------~~  206 (704)
                       +.++.+..++.+.+.        .++..|+.+|..++..+++....+  ...+|.++.+|.+               .+
T Consensus       179 -~~~~~l~~lL~D~d~--------~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~  247 (618)
T 1w63_A          179 -MFLPATKNLLNEKNH--------GVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISD  247 (618)
T ss_dssp             -GGGGGTTTSTTCCCH--------HHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSC
T ss_pred             -HHHHHHHHHhCCCCH--------hHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCC
Confidence             567777777776554        899999999999997555432222  3567777776652               47


Q ss_pred             HHHHHHHHHHHHHhccCCch
Q 005282          207 VKVQRAAAGALRTLAFKNDE  226 (704)
Q Consensus       207 ~~~~~~a~~~L~~l~~~~~~  226 (704)
                      +-.+..++.+|..++..++.
T Consensus       248 ~~~q~~il~~L~~l~~~~~~  267 (618)
T 1w63_A          248 PFLQVRILRLLRILGRNDDD  267 (618)
T ss_dssp             HHHHHHHHHHHHHHTTTCHH
T ss_pred             ChHHHHHHHHHHHhCCCCHH
Confidence            88888888888888865443

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.43  E-value=1.4e-10  Score=127.81  Aligned_cols=343  Identities=15%  Similarity=0.177  Sum_probs=249.4

Q ss_pred             HHHHHHHHHhhc-ChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHcCCcHH
Q 005282           69 KTASHALVEFAK-NEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALPH  147 (704)
Q Consensus        69 ~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~  147 (704)
                      +-+.-.+..++. +++....+     +..+.+-|.++++          .++..|+++|+++.. ++..     ...++.
T Consensus        88 rl~Yl~~~~~~~~~~e~~~l~-----in~l~kDL~~~n~----------~vr~lAL~~L~~i~~-~~~~-----~~l~~~  146 (618)
T 1w63_A           88 RIGYLGAMLLLDERQDVHLLM-----TNCIKNDLNHSTQ----------FVQGLALCTLGCMGS-SEMC-----RDLAGE  146 (618)
T ss_dssp             HHHHHHHHHHCCCCHHHHHHH-----HHHHHHHHSCSSS----------HHHHHHHHHHHHHCC-HHHH-----HHHHHH
T ss_pred             HHHHHHHHHHhCCCcHHHHHH-----HHHHHHhcCCCCH----------hHHHHHHHHHHhcCC-HHHH-----HHHHHH
Confidence            333334444444 34443333     6778888888765          899999999999984 3332     245678


Q ss_pred             HHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchh
Q 005282          148 LVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDEN  227 (704)
Q Consensus       148 L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~  227 (704)
                      +..++.+.+.        .++..|+.++.++...+++..     .++++.+..++.+.++.++..|+.+|..++..+++.
T Consensus       147 l~~~L~~~~~--------~VRk~A~~al~~l~~~~p~~v-----~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~  213 (618)
T 1w63_A          147 VEKLLKTSNS--------YLRKKAALCAVHVIRKVPELM-----EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDM  213 (618)
T ss_dssp             HHHHHHSCCH--------HHHHHHHHHHHHHHHHCGGGG-----GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHH
T ss_pred             HHHHHcCCCH--------HHHHHHHHHHHHHHHHChHHH-----HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHH
Confidence            8888887654        999999999999998776532     267888899999999999999999999999654443


Q ss_pred             hHHhHhcCChHHHHHhhcC---------------CCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhc-----
Q 005282          228 KKLIVECNALPTLVLMLRS---------------EDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLS-----  287 (704)
Q Consensus       228 ~~~~~~~~~i~~L~~lL~~---------------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~-----  287 (704)
                      ...+  ...++.++..|.+               .++..+..++.+|+.++..++...     ....+.|..++.     
T Consensus       214 ~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~-----~~~~~~L~~l~~~~~~~  286 (618)
T 1w63_A          214 LAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSS-----EAMNDILAQVATNTETS  286 (618)
T ss_dssp             HHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHH-----HTTHHHHHHHHHTSCCS
T ss_pred             HHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHH-----HHHHHHHHHHHhccccc
Confidence            2222  2467888877653               488999999999999987765432     245556666653     


Q ss_pred             -CCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHH
Q 005282          288 -SSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLL  366 (704)
Q Consensus       288 -~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~  366 (704)
                       +.+..+...|+.++..+.. .+    .+. ..+++.|..++.++++.++..|+.+|..++...+   ..+ ......++
T Consensus       287 ~~~~~aV~~ea~~~i~~l~~-~~----~l~-~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p---~~~-~~~~~~i~  356 (618)
T 1w63_A          287 KNVGNAILYETVLTIMDIKS-ES----GLR-VLAINILGRFLLNNDKNIRYVALTSLLKTVQTDH---NAV-QRHRSTIV  356 (618)
T ss_dssp             STHHHHHHHHHHHHHHHSCC-CH----HHH-HHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHH---HHH-GGGHHHHH
T ss_pred             cchHHHHHHHHHHHHHhcCC-CH----HHH-HHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCH---HHH-HHHHHHHH
Confidence             2234678888888888642 11    111 2467889999999999999999999999986432   122 23556788


Q ss_pred             HhhcCCChhHHHHHHHHHHHcccCCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhc
Q 005282          367 KLLDSKNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVA  446 (704)
Q Consensus       367 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~  446 (704)
                      .++.+.+..++..++.+|..++... +...+                                      ++.++..+...
T Consensus       357 ~~l~d~d~~Ir~~alelL~~l~~~~-nv~~i--------------------------------------v~eL~~~l~~~  397 (618)
T 1w63_A          357 DCLKDLDVSIKRRAMELSFALVNGN-NIRGM--------------------------------------MKELLYFLDSC  397 (618)
T ss_dssp             HGGGSSCHHHHHHHHHHHHHHCCSS-STHHH--------------------------------------HHHHHHHHHHC
T ss_pred             HHccCCChhHHHHHHHHHHHHcccc-cHHHH--------------------------------------HHHHHHHHHhC
Confidence            9999999999999999999997643 23332                                      33567777888


Q ss_pred             cHHHHHHHHHHHHhccCC-CccceeeecCCcHHHHHHHHhhcchhhhhhHHHHHHHHhhhc
Q 005282          447 DRAVKRRVTLALAHLCAP-DDCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLATKA  506 (704)
Q Consensus       447 ~~~v~~~a~~~L~~l~~~-~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~  506 (704)
                      +.+++..++.+|+.++.. +...     ...++.|++++......++..+...+..+..+.
T Consensus       398 d~e~r~~~v~~I~~la~k~~~~~-----~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~  453 (618)
T 1w63_A          398 EPEFKADCASGIFLAAEKYAPSK-----RWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNS  453 (618)
T ss_dssp             CHHHHHHHHHHHHHHHHSSCCCH-----HHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHHHHHHHhCccH-----HHHHHHHHHHHHhccchhHHHHHHHHHHHHhcC
Confidence            999999999999999653 2211     234788899998877788888888999888764

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.41  E-value=1.5e-12  Score=151.40  Aligned_cols=434  Identities=15%  Similarity=0.116  Sum_probs=261.8

Q ss_pred             HHHHHHHhhhccCCchhhHHHHHHHHHHHHHhhcC-hhH-HHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHH
Q 005282           47 IRAQIDILNSKFSSDETDRAAAKTASHALVEFAKN-EEI-VSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAF  124 (704)
Q Consensus        47 ~~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~-~~~-~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~  124 (704)
                      .+.+++.+...+..++.+..++..++.++.++... ... ........+++.+.+.+.+.+          ++++..++.
T Consensus       170 ~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~----------~~vr~~a~~  239 (876)
T 1qgr_A          170 SNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPD----------TRVRVAALQ  239 (876)
T ss_dssp             HHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSS----------HHHHHHHHH
T ss_pred             HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCC----------HHHHHHHHH
Confidence            45556666666654432455788899998887642 111 000111124677777776554          489999999


Q ss_pred             HHHhhc-CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChh------------------h
Q 005282          125 ALGLLA-VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENAN------------------I  185 (704)
Q Consensus       125 ~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~------------------~  185 (704)
                      +|..++ ..+..-...+....++.++..+.+.+.        .++..++..+..++.....                  .
T Consensus       240 ~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--------~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~  311 (876)
T 1qgr_A          240 NLVKIMSLYYQYMETYMGPALFAITIEAMKSDID--------EVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTS  311 (876)
T ss_dssp             HHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCC
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCch--------HHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchh
Confidence            999999 454433333333566777766654332        8899999999888753210                  0


Q ss_pred             hhhh--hccCCcHHHHHHhc-------CCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHH
Q 005282          186 KTRV--RVEDGIPPLVELLK-------FVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAV  256 (704)
Q Consensus       186 ~~~~--~~~~~i~~L~~ll~-------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~  256 (704)
                      ....  .-...++.++..+.       ++++.++..+..++..++...++   .+. ..+++.+...+.++++.+|..++
T Consensus       312 ~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~---~~~-~~~l~~l~~~l~~~~~~~r~~a~  387 (876)
T 1qgr_A          312 KFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIV-PHVLPFIKEHIKNPDWRYRDAAV  387 (876)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG---GGH-HHHHHHHHHHTTCSSHHHHHHHH
T ss_pred             HHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH---hhH-HHHHHHHHHHccCCChHHHHHHH
Confidence            0000  01234666777775       23568899999999999853221   122 23566777788889999999999


Q ss_pred             HHHHHHhcCCh-hhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcch-HHHHhcCChHHHHHhhCCCCHH
Q 005282          257 GVIGNLVHSSP-SIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSK-VHIVQRGAVRPLIEMLQSPDSQ  334 (704)
Q Consensus       257 ~~L~~l~~~~~-~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~~~i~~L~~ll~~~~~~  334 (704)
                      ++++.++.... ...... -..+++.++..+.++++.++..|+++|++++...+... ..-.-..+++.|+..+.++ +.
T Consensus       388 ~~l~~i~~~~~~~~~~~~-~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~  465 (876)
T 1qgr_A          388 MAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PR  465 (876)
T ss_dssp             HHHHHTSSSSCHHHHHHH-HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HH
T ss_pred             HHHHHHHcCCCHHHHHHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HH
Confidence            99999997643 222222 24578899999999999999999999999986533210 0001124577888888775 88


Q ss_pred             HHHHHHHHHHHhhcCCc--------------hhhhHHhhCChHHHHHhhcCC---ChhHHHHHHHHHHHcccC-CchhhH
Q 005282          335 LKEMSAFALGRLAQDTH--------------NQAGIAQDGGILPLLKLLDSK---NGSLQHNAAFALYGLADN-EDNVAD  396 (704)
Q Consensus       335 v~~~a~~~L~~l~~~~~--------------~~~~~~~~~~~~~L~~ll~~~---~~~v~~~a~~~L~~l~~~-~~~~~~  396 (704)
                      ++..++++|.+++....              ....-.-...++.|++++...   +..++..+..++..++.. +.....
T Consensus       466 v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~  545 (876)
T 1qgr_A          466 VASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYP  545 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHH
T ss_pred             HHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHH
Confidence            99999999999985421              000001123556677777553   457888888888888742 222211


Q ss_pred             HHhhCCccccccccc----------c-cc----cc-hHHHHHHHHHHHH--------HhhcchhHHHHHHHhhcc--HHH
Q 005282          397 LVRVGGVQKLQDGEF----------T-VQ----PT-KDCVARTLKRLEE--------KVHGRVLNHLLYLLRVAD--RAV  450 (704)
Q Consensus       397 l~~~g~i~~l~~~~~----------~-~~----~~-~~~~~~~~~~~~~--------~~~~~~~~~L~~ll~~~~--~~v  450 (704)
                      ++. ..++.+.+...          . ..    +. ...+...+..+..        .+...+++.++.++....  +.+
T Consensus       546 ~~~-~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v  624 (876)
T 1qgr_A          546 AVQ-KTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGV  624 (876)
T ss_dssp             HHH-HHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHH
T ss_pred             HHH-HHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCc
Confidence            111 11111110000          0 00    00 1112222222211        113346777777777654  378


Q ss_pred             HHHHHHHHHhccCC--CccceeeecCCcHHHHHHHHhhc-chhhhhhHHHHHHHHhhhcC
Q 005282          451 KRRVTLALAHLCAP--DDCKTIFIDNNGLELLLGLLEST-SVKQREESSVALYKLATKAT  507 (704)
Q Consensus       451 ~~~a~~~L~~l~~~--~~~~~~l~~~~~i~~L~~ll~~~-~~~~~~~a~~~L~~L~~~~~  507 (704)
                      +..++.++..++..  ......+  ...++.|...+.+. ++.++..|..++..++....
T Consensus       625 ~~~a~~~l~~l~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~  682 (876)
T 1qgr_A          625 QEDALMAVSTLVEVLGGEFLKYM--EAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQ  682 (876)
T ss_dssp             HHHHHHHHHHHHHHHGGGGGGGH--HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHG
T ss_pred             cHHHHHHHHHHHHHHHhhHHHHH--HHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHH
Confidence            89999999998542  2222221  24678888888875 88999999999999988653

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.40  E-value=6.5e-12  Score=145.74  Aligned_cols=433  Identities=15%  Similarity=0.107  Sum_probs=262.2

Q ss_pred             HHHHHHHhhhccCCchhhHHHHHHHHHHHHHhhcC-hhH-HHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHH
Q 005282           47 IRAQIDILNSKFSSDETDRAAAKTASHALVEFAKN-EEI-VSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAF  124 (704)
Q Consensus        47 ~~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~-~~~-~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~  124 (704)
                      .+.+++.+...+.+.+.+..++..++.++..+..- ... ........+++.+.+.+.+.+          ++++..++.
T Consensus       177 ~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~----------~~~r~~a~~  246 (861)
T 2bpt_A          177 SNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAED----------IEVQAAAFG  246 (861)
T ss_dssp             HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSC----------HHHHHHHHH
T ss_pred             HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCC----------HHHHHHHHH
Confidence            44456666555554433456788888888876431 110 000001124667777776654          499999999


Q ss_pred             HHHhhc-CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhh--------------hhh-
Q 005282          125 ALGLLA-VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANI--------------KTR-  188 (704)
Q Consensus       125 ~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~--------------~~~-  188 (704)
                      +|..++ ..+..-........++.+...+.+.+        ..++..++.++..++......              ... 
T Consensus       247 ~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~--------~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~  318 (861)
T 2bpt_A          247 CLCKIMSKYYTFMKPYMEQALYALTIATMKSPN--------DKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFA  318 (861)
T ss_dssp             HHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSS--------HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc--------HHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHH
Confidence            999999 43332222221244555555554433        389999999999887532110              000 


Q ss_pred             -hhccCCcHHHHHHhcC-------CCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHH
Q 005282          189 -VRVEDGIPPLVELLKF-------VDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIG  260 (704)
Q Consensus       189 -~~~~~~i~~L~~ll~~-------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~  260 (704)
                       -.-...+|.++..+..       +++.++..+..+|..++...+   ..+. ..+++.+...+.+.++.+|..++++++
T Consensus       319 ~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~---~~~~-~~l~~~l~~~l~~~~~~~r~~a~~~l~  394 (861)
T 2bpt_A          319 LSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG---NHIL-EPVLEFVEQNITADNWRNREAAVMAFG  394 (861)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG---GGGH-HHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHcc---HhHH-HHHHHHHHHHcCCCChhHHHHHHHHHH
Confidence             0113457777777764       235789999999999985222   1111 234666777778889999999999999


Q ss_pred             HHhcCCh-hhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcch-HHHHhcCChHHHHHhhCCCCHHHHHH
Q 005282          261 NLVHSSP-SIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSK-VHIVQRGAVRPLIEMLQSPDSQLKEM  338 (704)
Q Consensus       261 ~l~~~~~-~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~~~i~~L~~ll~~~~~~v~~~  338 (704)
                      .++.... ....... ..+++.++..+.++++.++..+++++++++....... ..-.-..+++.++..+.+. +.++..
T Consensus       395 ~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~  472 (861)
T 2bpt_A          395 SIMDGPDKVQRTYYV-HQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATN  472 (861)
T ss_dssp             HTSSSSCHHHHHHHH-HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHH
T ss_pred             HHHcCCCHHHHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHH
Confidence            9996642 2222222 2468888899999999999999999999875321100 0001124577888888776 899999


Q ss_pred             HHHHHHHhhcCCc----hhhhHHhhCChHHHHHhhcCC--ChhHHHHHHHHHHHccc-CCchhhHHHhhCCccccccccc
Q 005282          339 SAFALGRLAQDTH----NQAGIAQDGGILPLLKLLDSK--NGSLQHNAAFALYGLAD-NEDNVADLVRVGGVQKLQDGEF  411 (704)
Q Consensus       339 a~~~L~~l~~~~~----~~~~~~~~~~~~~L~~ll~~~--~~~v~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~l~~~~~  411 (704)
                      ++++|.+++....    ....-.-...++.+++++.+.  ++.++..++.++..++. .++....... ..++.+.+...
T Consensus       473 a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~  551 (861)
T 2bpt_A          473 CSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA-SISTFVMDKLG  551 (861)
T ss_dssp             HHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHH-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHH-HHHHHHHHHHH
Confidence            9999999986421    111111134466777888753  37899999999999985 3322221111 11111111000


Q ss_pred             c----------------cccchHHHHHHHHHHHHHh-------hcchhHHHHHHHhhccH-HHHHHHHHHHHhccCC--C
Q 005282          412 T----------------VQPTKDCVARTLKRLEEKV-------HGRVLNHLLYLLRVADR-AVKRRVTLALAHLCAP--D  465 (704)
Q Consensus       412 ~----------------~~~~~~~~~~~~~~~~~~~-------~~~~~~~L~~ll~~~~~-~v~~~a~~~L~~l~~~--~  465 (704)
                      .                .......+...+..+....       ...+++.++..+...+. .++..++.+++.++..  .
T Consensus       552 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~  631 (861)
T 2bpt_A          552 QTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGK  631 (861)
T ss_dssp             HHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGG
T ss_pred             HHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhh
Confidence            0                0000011122222222211       23466777788877766 8999999999988542  2


Q ss_pred             ccceeeecCCcHHHHHHHHhhcchhhhhhHHHHHHHHhhhc
Q 005282          466 DCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLATKA  506 (704)
Q Consensus       466 ~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~  506 (704)
                      +....+  ...++.|...+.+.++.++..|..++..+++..
T Consensus       632 ~~~~~l--~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~  670 (861)
T 2bpt_A          632 GFEKYL--ETFSPYLLKALNQVDSPVSITAVGFIADISNSL  670 (861)
T ss_dssp             GGHHHH--HHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHT
T ss_pred             hHHHHH--HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHh
Confidence            222211  246788888887788889999999999998765

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.38  E-value=1.5e-11  Score=116.01  Aligned_cols=190  Identities=24%  Similarity=0.289  Sum_probs=158.0

Q ss_pred             cCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchH
Q 005282          234 CNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKV  313 (704)
Q Consensus       234 ~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~  313 (704)
                      .+.++.|+..|.++++.++..++..|+.+..           .+.++.|+.++.++++.++..++.+|+.+..       
T Consensus        18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-------   79 (211)
T 3ltm_A           18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-------   79 (211)
T ss_dssp             GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-------
T ss_pred             HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence            4568999999999999999999999998752           2468899999999999999999999998742       


Q ss_pred             HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcccCCch
Q 005282          314 HIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDN  393 (704)
Q Consensus       314 ~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~  393 (704)
                          .+.++.|+.++.++++.++..++++|+.+..          .+.++.|+.++.+.++.++..|+.+|..+...   
T Consensus        80 ----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~---  142 (211)
T 3ltm_A           80 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGDE---  142 (211)
T ss_dssp             ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG---
T ss_pred             ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH---
Confidence                3468999999999999999999999998853          24678899999999999999999999998321   


Q ss_pred             hhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHHHHHHHHhccCCCccceeeec
Q 005282          394 VADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPDDCKTIFID  473 (704)
Q Consensus       394 ~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~  473 (704)
                                                              ..++.|..++.++++.++..|+.+|+.+.          .
T Consensus       143 ----------------------------------------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~----------~  172 (211)
T 3ltm_A          143 ----------------------------------------RAVEPLIKALKDEDGWVRQSAADALGEIG----------G  172 (211)
T ss_dssp             ----------------------------------------GGHHHHHHHTTCSSHHHHHHHHHHHHHHC----------S
T ss_pred             ----------------------------------------HHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------c
Confidence                                                    13456778888899999999999999993          2


Q ss_pred             CCcHHHHHHHHhhcchhhhhhHHHHHHHHhhhcCC
Q 005282          474 NNGLELLLGLLESTSVKQREESSVALYKLATKATS  508 (704)
Q Consensus       474 ~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~~  508 (704)
                      ..+++.|..++.++++.+|..|..+|.++..+...
T Consensus       173 ~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~~  207 (211)
T 3ltm_A          173 ERVRAAMEKLAETGTGFARKVAVNYLETHKSFNHH  207 (211)
T ss_dssp             HHHHHHHHHHHHHCCHHHHHHHHHHHHC-------
T ss_pred             hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCC
Confidence            46789999999999999999999999999887654

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.38  E-value=2e-11  Score=130.50  Aligned_cols=354  Identities=12%  Similarity=0.087  Sum_probs=232.7

Q ss_pred             HHHHHHhhhccCCchhhHHHHHHHHHHHHHhhcC-----------------hhHHHHHHhCCChHHHHhhccCCCcCCCC
Q 005282           48 RAQIDILNSKFSSDETDRAAAKTASHALVEFAKN-----------------EEIVSLIVDNGAVPALVEHLQTPPQLTNA  110 (704)
Q Consensus        48 ~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~-----------------~~~~~~l~~~g~i~~L~~lL~~~~~~~~~  110 (704)
                      +..+..|..++...+.+..++..|+..|.+....                 ++.+.     .+-..|++.|.+.+.    
T Consensus        34 ~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~-----~ik~~ll~~l~~~~~----  104 (462)
T 1ibr_B           34 PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARR-----EVKNYVLQTLGTETY----  104 (462)
T ss_dssp             HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHH-----HHHHHHHHHTTCCCS----
T ss_pred             HHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHH-----HHHHHHHHHhCCCCc----
Confidence            4444455555544444566788888888887542                 12212     234567788877765    


Q ss_pred             CCCCchHHHHHHHHHHHhhcC--ChhhHHHHHHcCCcHHHHHHHhhcc-CCCCCcchhHHHHHHHHHHHHhhhcC-hhhh
Q 005282          111 QIPYEHEVEKECAFALGLLAV--KPEHQQIIVDTGALPHLVSLLKQYK-NGGNSRALSGVIRRAADAITNLAHEN-ANIK  186 (704)
Q Consensus       111 ~~~~d~~v~~~a~~~L~~l~~--~~~~~~~~~~~g~l~~L~~lL~~~~-~~~~~~~~~~~~~~a~~~L~~l~~~~-~~~~  186 (704)
                            .+ ..++.+++.++.  .+...    -.+.++.|+..+.+.. +       +.++..++.+|..++... +..-
T Consensus       105 ------~v-~~~~~~i~~ia~~~~~~~~----w~~ll~~L~~~l~~~~~~-------~~~r~~al~~l~~l~~~~~~~~~  166 (462)
T 1ibr_B          105 ------RP-SSASQCVAGIACAEIPVNQ----WPELIPQLVANVTNPNST-------EHMKESTLEAIGYICQDIDPEQL  166 (462)
T ss_dssp             ------SS-CSHHHHHHHHHHHHGGGTC----CTTHHHHHHHHHHCTTCC-------HHHHHHHHHHHHHHHHHSCGGGT
T ss_pred             ------hh-hHHHHHHHHHHHHhccccc----cHHHHHHHHHHhccCCCC-------HHHHHHHHHHHHHHHHhCCchhh
Confidence                  56 789999999982  23210    1356788888887651 1       288999999999999643 2211


Q ss_pred             hhhhccCCcHHHHHHhcCC--CHHHHHHHHHHHHHhccCCchhhH-HhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 005282          187 TRVRVEDGIPPLVELLKFV--DVKVQRAAAGALRTLAFKNDENKK-LIVECNALPTLVLMLRSEDASVHFEAVGVIGNLV  263 (704)
Q Consensus       187 ~~~~~~~~i~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~  263 (704)
                      . -.....++.++..+.++  ++.+|..|+.++.++......... .....-+++.+...+.++++.++..++++|..++
T Consensus       167 ~-~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~  245 (462)
T 1ibr_B          167 Q-DKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIM  245 (462)
T ss_dssp             G-GGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred             H-hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence            1 11234677888888877  799999999999997642211110 0011113666667777889999999999999998


Q ss_pred             cCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccC------------------CcchHHH--HhcCChHH
Q 005282          264 HSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAAD------------------SNSKVHI--VQRGAVRP  323 (704)
Q Consensus       264 ~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~------------------~~~~~~~--~~~~~i~~  323 (704)
                      ...+.........++++.++..+.+.+++++..++..+..++...                  ......+  .-..+++.
T Consensus       246 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~  325 (462)
T 1ibr_B          246 SLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPI  325 (462)
T ss_dssp             HHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHH
Confidence            654432211111156777778888888999999999988887531                  0011111  01235666


Q ss_pred             HHHhhCC-------CCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcccCCchhhH
Q 005282          324 LIEMLQS-------PDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVAD  396 (704)
Q Consensus       324 L~~ll~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~  396 (704)
                      ++..+..       .+..++..|+.+|..++..-..  .+. ...++.+...+.+.++.+|..|+.+|+.++.....   
T Consensus       326 l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~--~~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~---  399 (462)
T 1ibr_B          326 LTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEP---  399 (462)
T ss_dssp             HHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT--THH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCT---
T ss_pred             HHHHHHhcccccccccchHHHHHHHHHHHHHHhccH--HHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcH---
Confidence            7777753       2357899999999999865431  122 24556677888899999999999999999863210   


Q ss_pred             HHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHHHHHHHHhccCC
Q 005282          397 LVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAP  464 (704)
Q Consensus       397 l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~  464 (704)
                          ..+...                         ...+++.++..+.++++.++..|+++|++++..
T Consensus       400 ----~~~~~~-------------------------l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~  438 (462)
T 1ibr_B          400 ----SQLKPL-------------------------VIQAMPTLIELMKDPSVVVRDTAAWTVGRICEL  438 (462)
T ss_dssp             ----TTTCTT-------------------------TTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             ----HHHHHH-------------------------HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence                001110                         123678899999999999999999999999653

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.37  E-value=5e-11  Score=138.53  Aligned_cols=396  Identities=12%  Similarity=0.060  Sum_probs=256.8

Q ss_pred             HHHHHHhhhccCCchhhHHHHHHHHHHHHHhhc-C----------------hhHHHHHHhCCChHHHHhhccCCCcCCCC
Q 005282           48 RAQIDILNSKFSSDETDRAAAKTASHALVEFAK-N----------------EEIVSLIVDNGAVPALVEHLQTPPQLTNA  110 (704)
Q Consensus        48 ~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~-~----------------~~~~~~l~~~g~i~~L~~lL~~~~~~~~~  110 (704)
                      +..+..|...+.+.+.+..++..|+..|.+... .                ++.+..     +.+.+++.|.+++.    
T Consensus        34 ~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~~l~~~~~~~-----ik~~ll~~l~~~~~----  104 (876)
T 1qgr_A           34 PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARRE-----VKNYVLHTLGTETY----  104 (876)
T ss_dssp             HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHH-----HHHHHHHHTTTCCS----
T ss_pred             hhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhhhccCCHHHHHH-----HHHHHHHHhCCCcH----
Confidence            445555555554443455678888888888543 1                122121     23447888877654    


Q ss_pred             CCCCchHHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcC-hhhhhhh
Q 005282          111 QIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHEN-ANIKTRV  189 (704)
Q Consensus       111 ~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~  189 (704)
                            .+ ..++.+++.++.......  .-...++.+...+.+...      ++.++..++.+|..++... ++. ..-
T Consensus       105 ------~~-~~~~~~l~~i~~~~~~~~--~w~~ll~~l~~~l~~~~~------~~~~r~~al~~l~~l~~~~~~~~-~~~  168 (876)
T 1qgr_A          105 ------RP-SSASQCVAGIACAEIPVN--QWPELIPQLVANVTNPNS------TEHMKESTLEAIGYICQDIDPEQ-LQD  168 (876)
T ss_dssp             ------SS-CHHHHHHHHHHHHHGGGT--CCTTHHHHHHHHHHCTTC------CHHHHHHHHHHHHHHHHHSCHHH-HGG
T ss_pred             ------HH-HHHHHHHHHHHHhhCccc--ccHHHHHHHHHHHhCCCC------CHHHHHHHHHHHHHHHHhcCHhh-HHh
Confidence                  56 788899998882211000  012456777777766510      1288999999999998642 211 111


Q ss_pred             hccCCcHHHHHHhcCC--CHHHHHHHHHHHHHhccCCchhhH-HhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCC
Q 005282          190 RVEDGIPPLVELLKFV--DVKVQRAAAGALRTLAFKNDENKK-LIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSS  266 (704)
Q Consensus       190 ~~~~~i~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~  266 (704)
                      .....++.+...+.++  ++.++..++.++..++..-..... ......+++.+...+.++++.++..++.+|..++...
T Consensus       169 ~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~  248 (876)
T 1qgr_A          169 KSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLY  248 (876)
T ss_dssp             GHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence            2234566777778776  689999999999998753221110 0111125677777788889999999999999998765


Q ss_pred             hhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCC------------------cchHHH--HhcCChHHHHH
Q 005282          267 PSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADS------------------NSKVHI--VQRGAVRPLIE  326 (704)
Q Consensus       267 ~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~------------------~~~~~~--~~~~~i~~L~~  326 (704)
                      +......+...+++.++..+.+.++.++..++..+..++....                  ......  .-..+++.++.
T Consensus       249 ~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~  328 (876)
T 1qgr_A          249 YQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQ  328 (876)
T ss_dssp             GGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHH
Confidence            5443333444678888888888888999999988888864310                  000000  01235667777


Q ss_pred             hhCC-------CCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcccCCc--hhhHH
Q 005282          327 MLQS-------PDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNED--NVADL  397 (704)
Q Consensus       327 ll~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~--~~~~l  397 (704)
                      .+..       .+..+|..+..+|..++.....  .+ -...++.+...+.+.++.+|..++.+|+.++....  .....
T Consensus       329 ~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~--~~-~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~  405 (876)
T 1qgr_A          329 TLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DI-VPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL  405 (876)
T ss_dssp             HTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--GG-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHH
T ss_pred             HhhcccccccccccHHHHHHHHHHHHHHHHCcH--hh-HHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence            7752       3457889999999998864321  11 12345566677788899999999999999986322  11111


Q ss_pred             HhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHHHHHHHHhccCCCccce--eeecCC
Q 005282          398 VRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPDDCKT--IFIDNN  475 (704)
Q Consensus       398 ~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~--~l~~~~  475 (704)
                                                        ...+++.++..+.++++.++..|+++|++++.......  .-.-..
T Consensus       406 ----------------------------------~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~  451 (876)
T 1qgr_A          406 ----------------------------------VIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAP  451 (876)
T ss_dssp             ----------------------------------HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHH
T ss_pred             ----------------------------------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHH
Confidence                                              11357778888899999999999999999965322110  001125


Q ss_pred             cHHHHHHHHhhcchhhhhhHHHHHHHHhhhc
Q 005282          476 GLELLLGLLESTSVKQREESSVALYKLATKA  506 (704)
Q Consensus       476 ~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~  506 (704)
                      .++.|+..+.+. +.++..|+++|.+++...
T Consensus       452 ~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~  481 (876)
T 1qgr_A          452 LLQCLIEGLSAE-PRVASNVCWAFSSLAEAA  481 (876)
T ss_dssp             HHHHHHHHTTSC-HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCC-HHHHHHHHHHHHHHHHHh
Confidence            677788877764 889999999999998764

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.36  E-value=8.2e-11  Score=136.45  Aligned_cols=394  Identities=13%  Similarity=0.071  Sum_probs=255.7

Q ss_pred             HHHHHHhhhccCCchhhHHHHHHHHHHHHHhhcC------------------hhHHHHHHhCCChHHHHhhccCCCcCCC
Q 005282           48 RAQIDILNSKFSSDETDRAAAKTASHALVEFAKN------------------EEIVSLIVDNGAVPALVEHLQTPPQLTN  109 (704)
Q Consensus        48 ~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~------------------~~~~~~l~~~g~i~~L~~lL~~~~~~~~  109 (704)
                      +..+..|..++.+.+.+..++..|+..|.+....                  ++.+.     .+-+.+++.|.+++.   
T Consensus        38 ~~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~~~~~~~~l~~~~~~-----~ik~~ll~~l~~~~~---  109 (861)
T 2bpt_A           38 LQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQRWITQVSPEAKN-----QIKTNALTALVSIEP---  109 (861)
T ss_dssp             HHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHSCHHHHH-----HHHHHHHHHHTCSSH---
T ss_pred             HHHHHHHHHHHhCCCCChHHHHHHHHHHHhhccCcChHHHHHHHHhHhhhCCHHHHH-----HHHHHHHHHHCCCch---
Confidence            4445555555544444566788888888887532                  11212     234677888877754   


Q ss_pred             CCCCCchHHHHHHHHHHHhhcC--ChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhh-h
Q 005282          110 AQIPYEHEVEKECAFALGLLAV--KPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANI-K  186 (704)
Q Consensus       110 ~~~~~d~~v~~~a~~~L~~l~~--~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~-~  186 (704)
                             .+|..++.+|+.++.  .|...    -.+.++.|++.+.+..+       +.++..++.++..++..-... +
T Consensus       110 -------~vr~~~~~~l~~i~~~~~p~~~----w~~ll~~L~~~l~~~~~-------~~~r~~al~~l~~l~~~~~~~~~  171 (861)
T 2bpt_A          110 -------RIANAAAQLIAAIADIELPHGA----WPELMKIMVDNTGAEQP-------ENVKRASLLALGYMCESADPQSQ  171 (861)
T ss_dssp             -------HHHHHHHHHHHHHHHHHGGGTC----CHHHHHHHHHHTSTTSC-------HHHHHHHHHHHHHHHHTSSTTSS
T ss_pred             -------HHHHHHHHHHHHHHHhhCcccc----cHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHHHHHcCChhhh
Confidence                   899999999999982  23100    01235666666655411       388999999999998642211 0


Q ss_pred             -hhhhccCCcHHHHHHhcCC--CHHHHHHHHHHHHHhccCCchhhH-HhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHH
Q 005282          187 -TRVRVEDGIPPLVELLKFV--DVKVQRAAAGALRTLAFKNDENKK-LIVECNALPTLVLMLRSEDASVHFEAVGVIGNL  262 (704)
Q Consensus       187 -~~~~~~~~i~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l  262 (704)
                       ..-.....++.+...+.++  ++.++..++.++..+...-...-. .......++.+...+.++++.++..++.+|..+
T Consensus       172 ~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l  251 (861)
T 2bpt_A          172 ALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKI  251 (861)
T ss_dssp             TTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence             0011223466677777776  899999999999987532111100 000112466777788889999999999999999


Q ss_pred             hcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCC-----------------cchHHHHhcCChHHHH
Q 005282          263 VHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADS-----------------NSKVHIVQRGAVRPLI  325 (704)
Q Consensus       263 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-----------------~~~~~~~~~~~i~~L~  325 (704)
                      +...+..........+++.+...+.+.+..++..++.++..++....                 ....... ..+++.++
T Consensus       252 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~il~~ll  330 (861)
T 2bpt_A          252 MSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSI-KDVVPNLL  330 (861)
T ss_dssp             HHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHH-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHH-HHHHHHHH
Confidence            86544332222322667777788888889999999999988875311                 0111111 34677888


Q ss_pred             HhhCC-------CCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcccCCchhhHHH
Q 005282          326 EMLQS-------PDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADLV  398 (704)
Q Consensus       326 ~ll~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~  398 (704)
                      ..+..       .+..++..+..+|..++.....  .+ -...++.+.+.+.+.++.+|..++.+++.++..... ..+.
T Consensus       331 ~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~--~~-~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~-~~~~  406 (861)
T 2bpt_A          331 NLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGN--HI-LEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDK-VQRT  406 (861)
T ss_dssp             HHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGG--GG-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCH-HHHH
T ss_pred             HHHHhcccccccccCcHHHHHHHHHHHHHHHccH--hH-HHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCH-HHHH
Confidence            77764       2357899999999998864321  11 123345566777888999999999999999853210 1110


Q ss_pred             hhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHHHHHHHHhccCCCcc----ceeeecC
Q 005282          399 RVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPDDC----KTIFIDN  474 (704)
Q Consensus       399 ~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~----~~~l~~~  474 (704)
                      .                               ....+++.++..+.+.++.++..++++|+.++..-..    ...  -.
T Consensus       407 ~-------------------------------~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~~  453 (861)
T 2bpt_A          407 Y-------------------------------YVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQH--LP  453 (861)
T ss_dssp             H-------------------------------HHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTT--HH
T ss_pred             H-------------------------------HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHH--HH
Confidence            0                               0012566778888888999999999999999643111    111  12


Q ss_pred             CcHHHHHHHHhhcchhhhhhHHHHHHHHhhhc
Q 005282          475 NGLELLLGLLESTSVKQREESSVALYKLATKA  506 (704)
Q Consensus       475 ~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~  506 (704)
                      ..++.|+..+.+. +.++..|+++|.+++...
T Consensus       454 ~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~  484 (861)
T 2bpt_A          454 GVVQACLIGLQDH-PKVATNCSWTIINLVEQL  484 (861)
T ss_dssp             HHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccC-hHHHHHHHHHHHHHHHhc
Confidence            4577888888665 899999999999998865

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.34  E-value=2.6e-11  Score=114.39  Aligned_cols=189  Identities=27%  Similarity=0.293  Sum_probs=156.9

Q ss_pred             cCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 005282          142 TGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLA  221 (704)
Q Consensus       142 ~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~  221 (704)
                      .+.++.|+..|.+.+.        .++..++.+|+.+..           .+.++.|+.++.++++.++..++.+|..+.
T Consensus        18 ~~~~~~L~~~L~~~~~--------~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~   78 (211)
T 3ltm_A           18 PEKVEMYIKNLQDDSY--------YVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIG   78 (211)
T ss_dssp             GGGHHHHHHHTTCSSH--------HHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHC
T ss_pred             HhHHHHHHHHHcCCCH--------HHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhC
Confidence            3468889999986554        999999999998753           256889999999999999999999999986


Q ss_pred             cCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHH
Q 005282          222 FKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLL  301 (704)
Q Consensus       222 ~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L  301 (704)
                      .           .+.++.|+.++.++++.++..++++|+.+..           .+.++.|+.++.++++.++..++.+|
T Consensus        79 ~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL  136 (211)
T 3ltm_A           79 D-----------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFAL  136 (211)
T ss_dssp             C-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred             C-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            3           3467899999999999999999999999852           24678899999999999999999999


Q ss_pred             HHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHH
Q 005282          302 GQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAA  381 (704)
Q Consensus       302 ~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~  381 (704)
                      +++..           ...++.|..++.++++.++..++.+|+.+..          ...++.|..++.+.++.++..|.
T Consensus       137 ~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~  195 (211)
T 3ltm_A          137 GEIGD-----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETGTGFARKVAV  195 (211)
T ss_dssp             HHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred             HHcCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCCCHHHHHHHH
Confidence            99842           2468899999999999999999999999843          33567788999999999999999


Q ss_pred             HHHHHcccCCc
Q 005282          382 FALYGLADNED  392 (704)
Q Consensus       382 ~~L~~l~~~~~  392 (704)
                      .+|.++.....
T Consensus       196 ~aL~~~~~~~~  206 (211)
T 3ltm_A          196 NYLETHKSFNH  206 (211)
T ss_dssp             HHHHC------
T ss_pred             HHHHhcCCCCC
Confidence            99999976443

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.31  E-value=9.4e-11  Score=109.58  Aligned_cols=186  Identities=25%  Similarity=0.307  Sum_probs=157.6

Q ss_pred             cCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchH
Q 005282          234 CNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKV  313 (704)
Q Consensus       234 ~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~  313 (704)
                      .+..+.++..|.++++.++..|+++|+.+..           .+.++.|+.++.++++.++..++.+|+.+..       
T Consensus        13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~-------   74 (201)
T 3ltj_A           13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-------   74 (201)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------
T ss_pred             CcchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence            3457889999999999999999999998752           2468899999999999999999999998742       


Q ss_pred             HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcccCCch
Q 005282          314 HIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDN  393 (704)
Q Consensus       314 ~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~  393 (704)
                          ...++.|+.++.++++.++..|+++|+++..          ...++.|+.++.+.++.++..|+.+|..+.. +  
T Consensus        75 ----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~--  137 (201)
T 3ltj_A           75 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-E--  137 (201)
T ss_dssp             ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-G--
T ss_pred             ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-H--
Confidence                2468999999999999999999999998753          2467889999999999999999999999842 0  


Q ss_pred             hhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHHHHHHHHhccCCCccceeeec
Q 005282          394 VADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPDDCKTIFID  473 (704)
Q Consensus       394 ~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~  473 (704)
                                                              ..++.|..++.++++.++..|+.+|+.+.          .
T Consensus       138 ----------------------------------------~~~~~L~~~l~d~~~~vr~~A~~aL~~~~----------~  167 (201)
T 3ltj_A          138 ----------------------------------------RAVEPLIKALKDEDGWVRQSAADALGEIG----------G  167 (201)
T ss_dssp             ----------------------------------------GGHHHHHHHTTCSSHHHHHHHHHHHHHHC----------S
T ss_pred             ----------------------------------------HHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------c
Confidence                                                    13556788888999999999999999993          2


Q ss_pred             CCcHHHHHHHHhhcchhhhhhHHHHHHHHhh
Q 005282          474 NNGLELLLGLLESTSVKQREESSVALYKLAT  504 (704)
Q Consensus       474 ~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~  504 (704)
                      ..+++.|..++.++++.+|..|..+|..+..
T Consensus       168 ~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~  198 (201)
T 3ltj_A          168 ERVRAAMEKLAETGTGFARKVAVNYLETHKS  198 (201)
T ss_dssp             HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC-
T ss_pred             hhHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence            4578999999999999999999999988653

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.29  E-value=6.6e-11  Score=110.66  Aligned_cols=184  Identities=28%  Similarity=0.303  Sum_probs=156.9

Q ss_pred             CCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhcc
Q 005282          143 GALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAF  222 (704)
Q Consensus       143 g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~  222 (704)
                      +..+.+++.|.+.+.        .++..++.+|+.+..           .+.++.|+.++.++++.++..++.+|..+..
T Consensus        14 ~~~~~~i~~L~~~~~--------~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~   74 (201)
T 3ltj_A           14 EKVEMYIKNLQDDSY--------YVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD   74 (201)
T ss_dssp             HHHHHHHHHTTCSCH--------HHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred             cchHHHHHHhcCCCH--------HHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC
Confidence            456788899988765        999999999998753           2457889999999999999999999999863


Q ss_pred             CCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHH
Q 005282          223 KNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLG  302 (704)
Q Consensus       223 ~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~  302 (704)
                                 .+.++.|+.++.++++.++..++++|+.+..           .+.++.|+.++.++++.++..++++|+
T Consensus        75 -----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~  132 (201)
T 3ltj_A           75 -----------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALG  132 (201)
T ss_dssp             -----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred             -----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence                       2468899999999999999999999999852           236788999999999999999999999


Q ss_pred             HHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHH
Q 005282          303 QFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAF  382 (704)
Q Consensus       303 ~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~  382 (704)
                      ++..           .+.++.|..++.++++.++..|+.+|+.+..          ...++.|..++.+.++.++..|..
T Consensus       133 ~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~  191 (201)
T 3ltj_A          133 EIGD-----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETGTGFARKVAVN  191 (201)
T ss_dssp             HHTC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             HhCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCCCHHHHHHHHH
Confidence            9842           3478899999999999999999999999832          235677888999999999999999


Q ss_pred             HHHHcc
Q 005282          383 ALYGLA  388 (704)
Q Consensus       383 ~L~~l~  388 (704)
                      +|..+.
T Consensus       192 aL~~l~  197 (201)
T 3ltj_A          192 YLETHK  197 (201)
T ss_dssp             HHHHCC
T ss_pred             HHHHHH
Confidence            999884

>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*

Probab=99.25  E-value=2e-11  Score=97.45  Aligned_cols=80  Identities=24%  Similarity=0.405  Sum_probs=65.6

Q ss_pred             EEEEE-cCeEeehhHHHHhhcCHHHHHhhcC--CCCCCCCCceEcCCCCHHHHHHHHHHHh-----c---Cccc---cCh
Q 005282          538 VTFVV-EGKQFYAHRICLLASSDAFRAMFDG--GYKEKNAKDVEIPNIRWNVFELMMRFIY-----T---GNVD---VSV  603 (704)
Q Consensus       538 ~~~~~-~~~~~~~hk~iL~~~s~~f~~~f~~--~~~e~~~~~i~l~~~~~~~~~~~l~~~Y-----~---~~~~---~~~  603 (704)
                      |+++. +|.+|.+||.+ +..|+||++||.+  ++.|+....|+++++++..++.+++|+|     +   +.++   ++.
T Consensus         4 v~L~SsDg~~F~v~r~v-A~~S~~ik~m~~~~~~~~E~~~~~I~l~~V~~~iL~kViey~~~h~~~~~~~~~i~~~~i~~   82 (97)
T 4ajy_C            4 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAP   82 (97)
T ss_dssp             EEEECTTCCEEEEEHHH-HTTSHHHHHHHCCC--------CEEECTTSCHHHHHHHHHHHHHHHHHTTCCSCCCCCCCCG
T ss_pred             EEEEecCCcEEEecHHH-HHHhHHHHHHHHhCCCccccCCCceECCCCCHHHHHHHHHHHHHhcccCCCcCCCCcCcCCH
Confidence            44554 78999999999 9999999999987  6778778899999999999999999999     4   6676   889


Q ss_pred             hhHHHHHHHHhhhCh
Q 005282          604 DIAQDLLRAADQYLL  618 (704)
Q Consensus       604 ~~~~~ll~~A~~~~~  618 (704)
                      +++++|+.+|+++++
T Consensus        83 ~~l~eLl~AAnyL~~   97 (97)
T 4ajy_C           83 EIALELLMAANFLDC   97 (97)
T ss_dssp             GGHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHhhhCC
Confidence            999999999999873

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=99.19  E-value=1.8e-08  Score=110.53  Aligned_cols=356  Identities=18%  Similarity=0.214  Sum_probs=240.4

Q ss_pred             hHHHHHHHHHHHHHhhc-ChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHc
Q 005282           64 DRAAAKTASHALVEFAK-NEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDT  142 (704)
Q Consensus        64 ~~~~~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~  142 (704)
                      +...++-+.-.+..++. +++....+     +..+.+=|.++++          .++..|+++|+++.. ++..+     
T Consensus        87 ~~~~Krl~YL~l~~~~~~~~e~~~L~-----iN~l~kDl~~~n~----------~ir~lALr~L~~i~~-~e~~~-----  145 (621)
T 2vgl_A           87 RYTEKQIGYLFISVLVNSNSELIRLI-----NNAIKNDLASRNP----------TFMGLALHCIANVGS-REMAE-----  145 (621)
T ss_dssp             CHHHHHHHHHHHHHSCCCCHHHHHHH-----HHHHHHHHHSCCH----------HHHHHHHHHHHHHCC-HHHHH-----
T ss_pred             CHHHHHHHHHHHHHHccCCcHHHHHH-----HHHHHHhcCCCCH----------HHHHHHHHHhhccCC-HHHHH-----
Confidence            33445555555666655 35544333     5667777777654          899999999999964 44333     


Q ss_pred             CCcHHHHHHH--hhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHh
Q 005282          143 GALPHLVSLL--KQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTL  220 (704)
Q Consensus       143 g~l~~L~~lL--~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l  220 (704)
                      ..++.+.+.+  .+.++        -++..|+.++.++...+|+.   +...+.++.+..+|.+.++.++..|+.++..+
T Consensus       146 ~l~~~v~~~l~~~d~~~--------~VRK~A~~al~kl~~~~p~~---~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i  214 (621)
T 2vgl_A          146 AFAGEIPKILVAGDTMD--------SVKQSAALCLLRLYRTSPDL---VPMGDWTSRVVHLLNDQHLGVVTAATSLITTL  214 (621)
T ss_dssp             HHTTHHHHHHHCSSSCH--------HHHHHHHHHHHHHHHHCGGG---CCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCH--------HHHHHHHHHHHHHHHhChhh---cCchhHHHHHHHHhCCCCccHHHHHHHHHHHH
Confidence            3568888888  44443        89999999999999866643   22258899999999999999999999999999


Q ss_pred             ccCCchhhHHhHhcCChHHHHHhhcCC-------------CHHHHHHHHHHHHHHhcC-ChhhHHHHHHcCCHHHHHHHh
Q 005282          221 AFKNDENKKLIVECNALPTLVLMLRSE-------------DASVHFEAVGVIGNLVHS-SPSIKKEVILAGALQPVIGLL  286 (704)
Q Consensus       221 ~~~~~~~~~~~~~~~~i~~L~~lL~~~-------------~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~l~~L~~ll  286 (704)
                      +..++..-...+ ...++.|.+++...             ++..+...+..|..++.. ++.....+.+  .++.++..+
T Consensus       215 ~~~~~~~~~~~~-~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~  291 (621)
T 2vgl_A          215 AQKNPEEFKTSV-SLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKA  291 (621)
T ss_dssp             HHHCHHHHTTHH-HHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHH
T ss_pred             HHhChHHHHHHH-HHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhh
Confidence            875544211111 11223333343221             688999999999988753 3343333222  233333322


Q ss_pred             c---------CCC--hhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhh
Q 005282          287 S---------SSC--SESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAG  355 (704)
Q Consensus       287 ~---------~~~--~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~  355 (704)
                      .         +.+  ..+..+|+.++..+.. .++    +. ..++..|..++.++++.++..++.+|..++...+... 
T Consensus       292 ~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~-~~~----~~-~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~-  364 (621)
T 2vgl_A          292 QEPPKSKKVQHSNAKNAVLFEAISLIIHHDS-EPN----LL-VRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHE-  364 (621)
T ss_dssp             HSCCSCSSHHHHHHHHHHHHHHHHHHHHHCC-CHH----HH-HHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHH-
T ss_pred             ccCcccccccccchHHHHHHHHHHHHHhcCC-cHH----HH-HHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHH-
Confidence            1         112  2667778888887742 111    11 2357788899999999999999999999997653222 


Q ss_pred             HHhhCChHHHHHhhc-CCChhHHHHHHHHHHHcccCCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcc
Q 005282          356 IAQDGGILPLLKLLD-SKNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGR  434 (704)
Q Consensus       356 ~~~~~~~~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (704)
                      .+ ......++.++. +.+..++..++.+|..++. +++...++                                    
T Consensus       365 ~~-~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~-~~Nv~~Iv------------------------------------  406 (621)
T 2vgl_A          365 AV-KTHIETVINALKTERDVSVRQRAVDLLYAMCD-RSNAQQIV------------------------------------  406 (621)
T ss_dssp             HH-HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCC-HHHHHHHH------------------------------------
T ss_pred             HH-HHHHHHHHHHhccCCCHhHHHHHHHHHHHHcC-hhhHHHHH------------------------------------
Confidence            22 345677888888 8999999999999999974 33444433                                    


Q ss_pred             hhHHHHHHHhhccHHHHHHHHHHHHhccCC-CccceeeecCCcHHHHHHHHhhcchhhhhhHHHHHHHHhhhc
Q 005282          435 VLNHLLYLLRVADRAVKRRVTLALAHLCAP-DDCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLATKA  506 (704)
Q Consensus       435 ~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~  506 (704)
                        ..|...+...+.+.+..++.+++.++.. +...     .--+..|++++......+...+...+.++....
T Consensus       407 --~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~-----~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~  472 (621)
T 2vgl_A          407 --AEMLSYLETADYSIREEIVLKVAILAEKYAVDY-----TWYVDTILNLIRIAGDYVSEEVWYRVIQIVINR  472 (621)
T ss_dssp             --HHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSST-----HHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGGG
T ss_pred             --HHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcH-----HHHHHHHHHHHHhhcccchHHHHHHHHHHHhCC
Confidence              3567777788899999999999998641 1111     234778889888766667777888888887654

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=99.15  E-value=2e-09  Score=129.38  Aligned_cols=405  Identities=14%  Similarity=0.083  Sum_probs=246.1

Q ss_pred             hHHHHHHHHHHHHHhhcCh------hHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChh-h
Q 005282           64 DRAAAKTASHALVEFAKNE------EIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPE-H  135 (704)
Q Consensus        64 ~~~~~~~a~~~L~~l~~~~------~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~-~  135 (704)
                      +...+..|...|.+....+      .....     +++.+++.|.+.+          +.+|..|+.+|++++ ..++ .
T Consensus        19 d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~-----il~~Ll~~L~d~~----------~~vR~~A~~~L~~l~~~~~~~~   83 (1230)
T 1u6g_C           19 DKDFRFMATNDLMTELQKDSIKLDDDSERK-----VVKMILKLLEDKN----------GEVQNLAVKCLGPLVSKVKEYQ   83 (1230)
T ss_dssp             SHHHHHHHHHHHHHHTSSSCCSCCTTHHHH-----HHHHHHHHTTCSS----------HHHHHHHHHHHHHHHTTSCHHH
T ss_pred             CHhHHHHHHHHHHHHHcccccCCChhHHHH-----HHHHHHHHhcCCC----------HHHHHHHHHHHHHHHHhCCHHH
Confidence            3446777877777665422      22222     3788999998654          499999999999999 3332 2


Q ss_pred             HHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhh-----hhhhccCCcHHHHHHhc-CCCHHH
Q 005282          136 QQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIK-----TRVRVEDGIPPLVELLK-FVDVKV  209 (704)
Q Consensus       136 ~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~-----~~~~~~~~i~~L~~ll~-~~~~~~  209 (704)
                      ..     ..++.++..+.+.+.        .++..++.+|+.++.......     ..-.....+|.|+..+. ++++.+
T Consensus        84 ~~-----~i~~~Ll~~l~d~~~--------~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~  150 (1230)
T 1u6g_C           84 VE-----TIVDTLCTNMLSDKE--------QLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSV  150 (1230)
T ss_dssp             HH-----HHHHHHHHHTTCSSS--------HHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHH
T ss_pred             HH-----HHHHHHHHHhcCCcH--------HHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHH
Confidence            11     245667777665554        889999999999885433210     11123456888999998 588999


Q ss_pred             HHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCC
Q 005282          210 QRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSS  289 (704)
Q Consensus       210 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~  289 (704)
                      +..|+.++..++...+..-.. .-...++.++..+.++++.+|..|+.+|+.++...+..   + -...++.++..+.+.
T Consensus       151 ~~~al~~l~~~~~~~~~~l~~-~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~---~-~~~~l~~l~~~L~~~  225 (1230)
T 1u6g_C          151 QLEALDIMADMLSRQGGLLVN-FHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI---V-FVDLIEHLLSELSKN  225 (1230)
T ss_dssp             HHHHHHHHHHHHHHTCSSCTT-THHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhHhHHHH-HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH---H-HHHHHHHHHHHhccC
Confidence            999999999998522211111 11235677778888899999999999999998654321   1 234577888777654


Q ss_pred             C-hhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHh
Q 005282          290 C-SESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKL  368 (704)
Q Consensus       290 ~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~l  368 (704)
                      + ..++..++.+++.++...+..... .-..+++.++..+.+.++++|..++.++..++........-.-...++.+++.
T Consensus       226 ~~~~~r~~a~~~l~~l~~~~~~~~~~-~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~  304 (1230)
T 1u6g_C          226 DSMSTTRTYIQCIAAISRQAGHRIGE-YLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKY  304 (1230)
T ss_dssp             CSSCSCTTHHHHHHHHHHHSSGGGTT-SCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTC
T ss_pred             CchhHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHH
Confidence            3 456777888888887644331111 11367899999999888999999999999988643221100111222333332


Q ss_pred             hc-------------------------------------CCChhHHHHHHHHHHHcccC-CchhhHHHhhCCcccccccc
Q 005282          369 LD-------------------------------------SKNGSLQHNAAFALYGLADN-EDNVADLVRVGGVQKLQDGE  410 (704)
Q Consensus       369 l~-------------------------------------~~~~~v~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~l~~~~  410 (704)
                      +.                                     +..+.+|..|+.+|..++.. ++....+.. ..++.+....
T Consensus       305 l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~-~l~~~l~~~l  383 (1230)
T 1u6g_C          305 LTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYK-TVSPALISRF  383 (1230)
T ss_dssp             CCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHT-TTHHHHHSTT
T ss_pred             hCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHH-HHHHHHHHHc
Confidence            21                                     11245788899999988762 222222221 2223332211


Q ss_pred             cccccc-----hHHHHHHHHHH----------------------HHHhhcchhHHHHHHHhhccHHHHHHHHHHHHhccC
Q 005282          411 FTVQPT-----KDCVARTLKRL----------------------EEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCA  463 (704)
Q Consensus       411 ~~~~~~-----~~~~~~~~~~~----------------------~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~  463 (704)
                      ......     ..++...+...                      -......+++.+...+.+.++.++..++.+|+.++.
T Consensus       384 ~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~  463 (1230)
T 1u6g_C          384 KEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVN  463 (1230)
T ss_dssp             SCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred             CCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence            111111     11222222211                      011233455566666888899999999999998854


Q ss_pred             C-CccceeeecCCcHHHHHHHHhhcch--hhhhhHHHHHHHHhh
Q 005282          464 P-DDCKTIFIDNNGLELLLGLLESTSV--KQREESSVALYKLAT  504 (704)
Q Consensus       464 ~-~~~~~~l~~~~~i~~L~~ll~~~~~--~~~~~a~~~L~~L~~  504 (704)
                      . +..-.. .-...++.+..++.+.++  .++..++..+..+..
T Consensus       464 ~~~~~l~~-~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~  506 (1230)
T 1u6g_C          464 VLPGALTQ-HIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILC  506 (1230)
T ss_dssp             HSTTTTGG-GHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHH
T ss_pred             HchhhhHH-HHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHH
Confidence            2 111111 112456777788876654  788888888888765

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=99.11  E-value=4.8e-09  Score=126.13  Aligned_cols=399  Identities=12%  Similarity=0.096  Sum_probs=252.8

Q ss_pred             HHHHHHHHhhhccCCchhhHHHHHHHHHHHHHhhc--Ch---hHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHH
Q 005282           46 DIRAQIDILNSKFSSDETDRAAAKTASHALVEFAK--NE---EIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEK  120 (704)
Q Consensus        46 ~~~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~--~~---~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~  120 (704)
                      ..+.+++.|...+.+ +.+...+..|+.+|..+..  .+   ....     .+++.+++.|.+++.          .+|.
T Consensus       130 ~~~~llp~L~~~l~~-~~~~~~~~~al~~l~~~~~~~~~~l~~~~~-----~ll~~l~~~L~~~~~----------~vR~  193 (1230)
T 1u6g_C          130 VCKKITGRLTSAIAK-QEDVSVQLEALDIMADMLSRQGGLLVNFHP-----SILTCLLPQLTSPRL----------AVRK  193 (1230)
T ss_dssp             HHHHHHHHHHHHHSC-CSCHHHHHHHHHHHHHHHHHTCSSCTTTHH-----HHHHHHGGGGGCSSH----------HHHH
T ss_pred             HHHHHHHHHHHHHcC-CCchHHHHHHHHHHHHHHHHhHhHHHHHHH-----HHHHHHHHHHcCCcH----------HHHH
Confidence            356677777666653 2334578888888888763  11   1222     247888888887654          8999


Q ss_pred             HHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHH
Q 005282          121 ECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVE  200 (704)
Q Consensus       121 ~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~  200 (704)
                      .|+.+|+.++.....  .+ -...++.++..|.+...       +.++..++.+++.++...+. .-.-.-...++.++.
T Consensus       194 ~a~~al~~l~~~~~~--~~-~~~~l~~l~~~L~~~~~-------~~~r~~a~~~l~~l~~~~~~-~~~~~l~~l~~~ll~  262 (1230)
T 1u6g_C          194 RTIIALGHLVMSCGN--IV-FVDLIEHLLSELSKNDS-------MSTTRTYIQCIAAISRQAGH-RIGEYLEKIIPLVVK  262 (1230)
T ss_dssp             HHHHHHHHHTTTC-------CTTHHHHHHHHHHHTCS-------SCSCTTHHHHHHHHHHHSSG-GGTTSCTTHHHHHHH
T ss_pred             HHHHHHHHHHHhcCH--HH-HHHHHHHHHHHhccCCc-------hhHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHH
Confidence            999999999932211  11 22457888888877542       14556678888888754332 111123467889999


Q ss_pred             HhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcC----------------------------------
Q 005282          201 LLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRS----------------------------------  246 (704)
Q Consensus       201 ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~----------------------------------  246 (704)
                      .+.+++++++..++.++..++...++...... ..+++.++..+..                                  
T Consensus       263 ~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l-~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  341 (1230)
T 1u6g_C          263 FCNVDDDELREYCIQAFESFVRRCPKEVYPHV-STIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSD  341 (1230)
T ss_dssp             HHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHH-HHHHHHHTTCCCCC---------------------------------
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHChHHHHHhH-HHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhccccccc
Confidence            99988999999999999988763332111111 1223344333321                                  


Q ss_pred             ---CCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCc-------------
Q 005282          247 ---EDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSN-------------  310 (704)
Q Consensus       247 ---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~-------------  310 (704)
                         ....+|..|+.++..++...+.....+ -...++.++..+.+.+..++..++.++..++.....             
T Consensus       342 ~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~-~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~  420 (1230)
T 1u6g_C          342 DDDMSWKVRRAAAKCLDAVVSTRHEMLPEF-YKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQ  420 (1230)
T ss_dssp             ---CTTHHHHHHHHHHHHHHTTCCTTHHHH-HTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------
T ss_pred             ccccCHHHHHHHHHHHHHHHHhchhHHHHH-HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCcccccc
Confidence               123578899999999986544322222 245778888888888899999999988877642111             


Q ss_pred             ---chHHH--HhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCCh--hHHHHHHHH
Q 005282          311 ---SKVHI--VQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNG--SLQHNAAFA  383 (704)
Q Consensus       311 ---~~~~~--~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~--~v~~~a~~~  383 (704)
                         ....+  .-..+++.+...++++++.++..++.+|+.++........-.-...++.++..+.+.++  .++..++..
T Consensus       421 ~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~  500 (1230)
T 1u6g_C          421 GETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSC  500 (1230)
T ss_dssp             CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred             ccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence               01111  11235566667788999999999999999988653221111123455677788877654  888899988


Q ss_pred             HHHcccC--CchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHHHHHHHHhc
Q 005282          384 LYGLADN--EDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHL  461 (704)
Q Consensus       384 L~~l~~~--~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l  461 (704)
                      +..+...  ++.....                                  ...+++.++..+.+.+..++..++.++..+
T Consensus       501 l~~~~~~~~~~~~~~~----------------------------------l~~llp~L~~~l~d~~~~v~~~al~~l~~l  546 (1230)
T 1u6g_C          501 LYVILCNHSPQVFHPH----------------------------------VQALVPPVVACVGDPFYKITSEALLVTQQL  546 (1230)
T ss_dssp             HHHHHHSSCGGGGHHH----------------------------------HTTTHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHhH----------------------------------HHHHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence            8887531  1111111                                  113567788888888888888888888887


Q ss_pred             cC--CC---ccceee--ecCCcHHHHHHHH--hhcchhhhhhHHHHHHHHhhhcC
Q 005282          462 CA--PD---DCKTIF--IDNNGLELLLGLL--ESTSVKQREESSVALYKLATKAT  507 (704)
Q Consensus       462 ~~--~~---~~~~~l--~~~~~i~~L~~ll--~~~~~~~~~~a~~~L~~L~~~~~  507 (704)
                      +.  .+   .....+  .-...++.++..+  .+.++.+|..|+.++..|+...+
T Consensus       547 ~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g  601 (1230)
T 1u6g_C          547 VKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLG  601 (1230)
T ss_dssp             HHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTG
T ss_pred             HHHhcCcccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhC
Confidence            52  11   000010  1124567777777  55778899999999999988764

>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D

Probab=99.09  E-value=3.1e-10  Score=97.48  Aligned_cols=98  Identities=15%  Similarity=0.212  Sum_probs=83.5

Q ss_pred             EEEEE-cCeEeehhHHHHhhcCHHHHHhhcCCCCCCCCCceEcCCCCHHHHHHHHHHHhcCc------------------
Q 005282          538 VTFVV-EGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFIYTGN------------------  598 (704)
Q Consensus       538 ~~~~~-~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~------------------  598 (704)
                      |+++. +|+.|.+|+.+ +..|++|+.||.+..    ...|++++++...++.+++|+|...                  
T Consensus         4 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~~----~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~   78 (141)
T 1fs1_B            4 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDLG----MDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDD   78 (141)
T ss_dssp             EEEECTTSCEEEEEGGG-GGTCHHHHHHHHHTC----CSSEECTTCCHHHHHHHHHHHHHHTTCC---------------
T ss_pred             EEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcC----CCceecCCcCHHHHHHHHHHHHHhccCCCccccccccccchhh
Confidence            66666 78999999998 789999999998631    4589999999999999999999865                  


Q ss_pred             --------cccChhhHHHHHHHHhhhChHhHHHHHHHHHHhhCChhhHHH
Q 005282          599 --------VDVSVDIAQDLLRAADQYLLEGLKRLCEYSIAQIISVENIML  640 (704)
Q Consensus       599 --------~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~~~~~  640 (704)
                              +.++.+++++|+.+|+|+++.+|.+.|.+++...+...+..+
T Consensus        79 i~~wD~~F~~vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ikgkt~ee  128 (141)
T 1fs1_B           79 IPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEE  128 (141)
T ss_dssp             --HHHHHHTCSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCHHH
T ss_pred             hhHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHH
Confidence                    557788999999999999999999999999977775555443

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=99.07  E-value=1.4e-07  Score=103.52  Aligned_cols=354  Identities=15%  Similarity=0.118  Sum_probs=234.2

Q ss_pred             HHHHHHHHHHHHHhhc-ChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHHHHHc
Q 005282           65 RAAAKTASHALVEFAK-NEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQIIVDT  142 (704)
Q Consensus        65 ~~~~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~~~~  142 (704)
                      ...+.+++..+..+.. +.+.      +.+....++++.+++.          +.+..+.-++..++ .+++....    
T Consensus        52 ~~~k~~~l~Kli~l~~~G~d~------s~~~~~vvkl~~s~~~----------~~Krl~YL~l~~~~~~~~e~~~L----  111 (621)
T 2vgl_A           52 GYSKKKYVCKLLFIFLLGHDI------DFGHMEAVNLLSSNRY----------TEKQIGYLFISVLVNSNSELIRL----  111 (621)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCC------CSCHHHHHHGGGCSCH----------HHHHHHHHHHHHSCCCCHHHHHH----
T ss_pred             HHHHHHHHHHHHHHHHcCCCC------chhHHHHHHHhcCCCH----------HHHHHHHHHHHHHccCCcHHHHH----
Confidence            3345555555554432 3221      3467788888888764          88988888999998 55554322    


Q ss_pred             CCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHh--cCCCHHHHHHHHHHHHHh
Q 005282          143 GALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELL--KFVDVKVQRAAAGALRTL  220 (704)
Q Consensus       143 g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll--~~~~~~~~~~a~~~L~~l  220 (704)
                       ++..+.+-+.++++        .++..|+.+|+++..  ++.     ....++.+.+.+  .+.++.+|+.|+.++..+
T Consensus       112 -~iN~l~kDl~~~n~--------~ir~lALr~L~~i~~--~e~-----~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl  175 (621)
T 2vgl_A          112 -INNAIKNDLASRNP--------TFMGLALHCIANVGS--REM-----AEAFAGEIPKILVAGDTMDSVKQSAALCLLRL  175 (621)
T ss_dssp             -HHHHHHHHHHSCCH--------HHHHHHHHHHHHHCC--HHH-----HHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHhcCCCCH--------HHHHHHHHHhhccCC--HHH-----HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence             23455555665543        789999999999963  332     235678899999  889999999999999999


Q ss_pred             ccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCC-----------
Q 005282          221 AFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSS-----------  289 (704)
Q Consensus       221 ~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~-----------  289 (704)
                      ...+|+..   ...+.++.+.++|.+.++.|+..|+.++..++..++....... ...+..|..++..+           
T Consensus       176 ~~~~p~~~---~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~-~~~~~~L~~ll~~~~~~~~~~~~~~  251 (621)
T 2vgl_A          176 YRTSPDLV---PMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSV-SLAVSRLSRIVTSASTDLQDYTYYF  251 (621)
T ss_dssp             HHHCGGGC---CCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHH-HHHHHHHHHHHHCCSSSCSTTEETT
T ss_pred             HHhChhhc---CchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHHH-HHHHHHHHHHHhCCCCCccchhhcC
Confidence            87444322   2257899999999999999999999999999976654211011 11233333444321           


Q ss_pred             --ChhHHHHHHHHHHHHhccCC-cchHHHHhcCChHHHHHhhC---------CC--CHHHHHHHHHHHHHhhcCCchhhh
Q 005282          290 --CSESKREAALLLGQFAAADS-NSKVHIVQRGAVRPLIEMLQ---------SP--DSQLKEMSAFALGRLAQDTHNQAG  355 (704)
Q Consensus       290 --~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~~i~~L~~ll~---------~~--~~~v~~~a~~~L~~l~~~~~~~~~  355 (704)
                        ++..+...+..|..++..++ +....+.  ..++.++..+.         +.  ...+...++.++..+...++.   
T Consensus       252 ~~~~w~qi~il~ll~~~~~~~d~~~~~~l~--~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~---  326 (621)
T 2vgl_A          252 VPAPWLSVKLLRLLQCYPPPEDPAVRGRLT--ECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNL---  326 (621)
T ss_dssp             EESHHHHHHHHHHGGGSSSCSSHHHHHHHH--HHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHH---
T ss_pred             CCCchHHHHHHHHHHHhCCCCCHHHHHHHH--HHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcHHH---
Confidence              46677778888877764222 2222221  13333333221         11  236777888888887632211   


Q ss_pred             HHhhCChHHHHHhhcCCChhHHHHHHHHHHHcccCCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcch
Q 005282          356 IAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRV  435 (704)
Q Consensus       356 ~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (704)
                        ...++..|..++.+.++++|..++.+|..++....... ++.                                  ..
T Consensus       327 --~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~-~~~----------------------------------~~  369 (621)
T 2vgl_A          327 --LVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHE-AVK----------------------------------TH  369 (621)
T ss_dssp             --HHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHH-HHH----------------------------------TT
T ss_pred             --HHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHH-HHH----------------------------------HH
Confidence              11345678888888999999999999999986432111 111                                  12


Q ss_pred             hHHHHHHHh-hccHHHHHHHHHHHHhccCCCccceeeecCCcHHHHHHHHhhcchhhhhhHHHHHHHHhhhc
Q 005282          436 LNHLLYLLR-VADRAVKRRVTLALAHLCAPDDCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLATKA  506 (704)
Q Consensus       436 ~~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~  506 (704)
                      ...++..+. +++..++..++..|..++.....      ...+..|...+.+.+.+.+..+..++..++.+-
T Consensus       370 ~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~Nv------~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~  435 (621)
T 2vgl_A          370 IETVINALKTERDVSVRQRAVDLLYAMCDRSNA------QQIVAEMLSYLETADYSIREEIVLKVAILAEKY  435 (621)
T ss_dssp             HHHHHHHHTTCCCHHHHHHHHHHHHHHCCHHHH------HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccCCCHhHHHHHHHHHHHHcChhhH------HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence            334666677 88999999999999999765321      134666778888888999999999999998754

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=98.98  E-value=2.8e-09  Score=118.53  Aligned_cols=193  Identities=13%  Similarity=0.141  Sum_probs=153.9

Q ss_pred             hHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHH-HHhhccCCCCCcchhHHHHHHH
Q 005282           94 VPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVS-LLKQYKNGGNSRALSGVIRRAA  172 (704)
Q Consensus        94 i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~-lL~~~~~~~~~~~~~~~~~~a~  172 (704)
                      +.++++.|+++++          +.|..|+++|++|+.++..+..+...|++..++. +|.+++.        +++..|+
T Consensus        36 i~Pll~~L~S~~~----------~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~--------~Vr~~A~   97 (684)
T 4gmo_A           36 ILPVLKDLKSPDA----------KSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNI--------DSRAAGW   97 (684)
T ss_dssp             THHHHHHHSSSCC----------SHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCH--------HHHHHHH
T ss_pred             HHHHHHHcCCCCH----------HHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCH--------HHHHHHH
Confidence            4556677888766          8999999999999999999999999999988665 5666554        9999999


Q ss_pred             HHHHHhhhc-ChhhhhhhhccCCcHHHHHHhcCCC---------------------HHHHHHHHHHHHHhccCCchhhHH
Q 005282          173 DAITNLAHE-NANIKTRVRVEDGIPPLVELLKFVD---------------------VKVQRAAAGALRTLAFKNDENKKL  230 (704)
Q Consensus       173 ~~L~~l~~~-~~~~~~~~~~~~~i~~L~~ll~~~~---------------------~~~~~~a~~~L~~l~~~~~~~~~~  230 (704)
                      ++|+||+.+ .++....++..|++++|..++++..                     ..+...++.+|++||.++.+....
T Consensus        98 gaLrnL~~~~g~d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~  177 (684)
T 4gmo_A           98 EILKVLAQEEEADFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEA  177 (684)
T ss_dssp             HHHHHHHHHSCHHHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             HHHHHHHhhcCchHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            999999964 5778888999999999999886211                     235567889999999878888888


Q ss_pred             hHhcCChHHHHHhhcC---CCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHH---HHHHHhcCCChhHHHHHHHHHHHH
Q 005282          231 IVECNALPTLVLMLRS---EDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQ---PVIGLLSSSCSESKREAALLLGQF  304 (704)
Q Consensus       231 ~~~~~~i~~L~~lL~~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~---~L~~ll~~~~~~~~~~a~~~L~~l  304 (704)
                      +...++++.|+.+|.+   ...+++..|+.+|..++.+++...+.+.+.+...   .+..+. ..+...+..++..|.|+
T Consensus       178 v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~-~~~~~~~~la~giL~Ni  256 (684)
T 4gmo_A          178 VATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLA-TGTDPRAVMACGVLHNV  256 (684)
T ss_dssp             HHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHH-HSSCTTHHHHHHHHHHH
T ss_pred             HHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHh-cCCcHHHHHHHHHHHhH
Confidence            8888999999998853   3468999999999999999988888888766433   333333 33445577888999987


Q ss_pred             h
Q 005282          305 A  305 (704)
Q Consensus       305 ~  305 (704)
                      .
T Consensus       257 ~  257 (684)
T 4gmo_A          257 F  257 (684)
T ss_dssp             H
T ss_pred             h
Confidence            5

>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*

Probab=98.96  E-value=7.9e-11  Score=103.60  Aligned_cols=108  Identities=15%  Similarity=0.294  Sum_probs=60.5

Q ss_pred             EEEEE-cCeEeehhHHHHhhcCHHHHHhhcCCCCCCCCCceEcCCCCHHHHHHHHHHHhcCc------------------
Q 005282          538 VTFVV-EGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFIYTGN------------------  598 (704)
Q Consensus       538 ~~~~~-~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~------------------  598 (704)
                      |+++. +|..|.+|+.+ +..|++|+.||.+..   ....|++++++...+..+++|+|...                  
T Consensus         6 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~~---~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~   81 (160)
T 2p1m_A            6 IVLKSSDGESFEVEEAV-ALESQTIAHMVEDDC---VDNGVPLPNVTSKILAKVIEYCKRHVEAAASKAEAVEGAATSDD   81 (160)
T ss_dssp             --CCC---------CHH-HHTCTTTC---------------CCTTSCHHHHHHHHHC-----------------------
T ss_pred             EEEEcCCCCEEEECHHH-HHHhHHHHHHHHccC---CCCceeCCcCcHHHHHHHHHHHHHcccCCCcccccccccccccc
Confidence            55554 79999999998 779999999998753   34489999999999999999999875                  


Q ss_pred             ---------cccChhhHHHHHHHHhhhChHhHHHHHHHHHHhhC---ChhhHHHHHHHHHHcC
Q 005282          599 ---------VDVSVDIAQDLLRAADQYLLEGLKRLCEYSIAQII---SVENIMLMYELSEAYN  649 (704)
Q Consensus       599 ---------~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~---~~~~~~~~~~~a~~~~  649 (704)
                               +.++.+++++|+.+|+|+++.+|.+.|..++...+   +++.+-.++.+...|.
T Consensus        82 ~i~~wD~~Fl~vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ikgkt~eeir~~f~I~nd~t  144 (160)
T 2p1m_A           82 DLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFNIKNDFT  144 (160)
T ss_dssp             -------------------CHHHHHHTTCHHHHHHHHHHHHHTTTTCCHHHHHHHTTCCCCCC
T ss_pred             hhhHHHHHHHcCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCC
Confidence                     34677789999999999999999999999998878   6666666555544443

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=98.89  E-value=1.2e-08  Score=113.56  Aligned_cols=201  Identities=17%  Similarity=0.120  Sum_probs=152.7

Q ss_pred             HHHHHhhhccCCchhhHHHHHHHHHHHHHhhcChhHHHHHHhCCChHHHH-hhccCCCcCCCCCCCCchHHHHHHHHHHH
Q 005282           49 AQIDILNSKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALV-EHLQTPPQLTNAQIPYEHEVEKECAFALG  127 (704)
Q Consensus        49 ~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~-~lL~~~~~~~~~~~~~d~~v~~~a~~~L~  127 (704)
                      .++++|..+-+   .++..+..|+++|.+++.++..++.+...|+|..++ .+|.+++.          +|+..|+++|+
T Consensus        35 ~i~Pll~~L~S---~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~----------~Vr~~A~gaLr  101 (684)
T 4gmo_A           35 KILPVLKDLKS---PDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNI----------DSRAAGWEILK  101 (684)
T ss_dssp             TTHHHHHHHSS---SCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCH----------HHHHHHHHHHH
T ss_pred             hHHHHHHHcCC---CCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCH----------HHHHHHHHHHH
Confidence            34444444333   233457899999999999999999999999988765 56777654          99999999999


Q ss_pred             hhc--CChhhHHHHHHcCCcHHHHHHHhhccCC-----CCCc--------chhHHHHHHHHHHHHhhhcChhhhhhhhcc
Q 005282          128 LLA--VKPEHQQIIVDTGALPHLVSLLKQYKNG-----GNSR--------ALSGVIRRAADAITNLAHENANIKTRVRVE  192 (704)
Q Consensus       128 ~l~--~~~~~~~~~~~~g~l~~L~~lL~~~~~~-----~~~~--------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~  192 (704)
                      ||+  .+++.+..+...|++++|..++++....     ....        -.+++...++.+|+++|..+......+...
T Consensus       102 nL~~~~g~d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~  181 (684)
T 4gmo_A          102 VLAQEEEADFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATK  181 (684)
T ss_dssp             HHHHHSCHHHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTC
T ss_pred             HHHhhcCchHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence            999  6789999999999999999999763211     0000        023566788899999998888888888889


Q ss_pred             CCcHHHHHHhcC---CCHHHHHHHHHHHHHhccCCchhhHHhHhcCChH---HHHHhhcCCCHHHHHHHHHHHHHHh
Q 005282          193 DGIPPLVELLKF---VDVKVQRAAAGALRTLAFKNDENKKLIVECNALP---TLVLMLRSEDASVHFEAVGVIGNLV  263 (704)
Q Consensus       193 ~~i~~L~~ll~~---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~---~L~~lL~~~~~~v~~~a~~~L~~l~  263 (704)
                      ++++.|+..|.+   ...+++..|+.+|+.++.++++..+.+.+.+...   .+..+. ..+...+..+++.|.|+.
T Consensus       182 ~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~-~~~~~~~~la~giL~Ni~  257 (684)
T 4gmo_A          182 QTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLA-TGTDPRAVMACGVLHNVF  257 (684)
T ss_dssp             HHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHH-HSSCTTHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHh-cCCcHHHHHHHHHHHhHh
Confidence            999999999863   3468999999999999998888888888766533   333333 334445778889999875

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=98.74  E-value=1.7e-06  Score=74.19  Aligned_cols=217  Identities=21%  Similarity=0.210  Sum_probs=171.5

Q ss_pred             HhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHH
Q 005282           89 VDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGV  167 (704)
Q Consensus        89 ~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~  167 (704)
                      .+..++..++.+|.++-.          .|+..|+.++..++ ..|+....+.     ..|+-+++.+..       ..+
T Consensus        29 ~d~~~l~~lI~~LDDDlw----------tV~kNAl~vi~~i~~~~~el~epl~-----~kL~vm~~ksEa-------Ipl   86 (253)
T 2db0_A           29 YDESVLKKLIELLDDDLW----------TVVKNAISIIMVIAKTREDLYEPML-----KKLFSLLKKSEA-------IPL   86 (253)
T ss_dssp             HCHHHHHHHHHHTTCSCH----------HHHHHHHHHHHHHHTTCGGGHHHHH-----HHHHHHHHHCCS-------HHH
T ss_pred             hhHHHHHHHHHHhccHHH----------HHHHhHHHHHHHHHHHhHHHHHHHH-----HHHHHHHhhccc-------Cch
Confidence            345668999999999876          89999999999999 7888766554     677888887764       366


Q ss_pred             HHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCC
Q 005282          168 IRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSE  247 (704)
Q Consensus       168 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~  247 (704)
                      ......+++.++..+|+.-.     +.+|.+..-.+-+++.++.....+|..++..+|..-..+     +.-+..++.++
T Consensus        87 tqeIa~a~G~la~i~Pe~v~-----~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~v-----~rdi~smltsk  156 (253)
T 2db0_A           87 TQEIAKAFGQMAKEKPELVK-----SMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASI-----VRDFMSMLSSK  156 (253)
T ss_dssp             HHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHH-----HHHHHHHTSCS
T ss_pred             HHHHHHHHhHHHHhCHHHHH-----hhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHHH-----HHHHHHHhcCC
Confidence            67788899999987876533     567888888888899999999999999998777655544     45688899999


Q ss_pred             CHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHh
Q 005282          248 DASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEM  327 (704)
Q Consensus       248 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l  327 (704)
                      |..-+..|+..++-+..+....     -.-++|.|..+|.+.+.-++..++.+|.+++..++..+.      ++..-+.-
T Consensus       157 d~~Dkl~aLnFi~alGen~~~y-----v~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRk------ii~~kl~e  225 (253)
T 2db0_A          157 NREDKLTALNFIEAMGENSFKY-----VNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRK------VVIKRLEE  225 (253)
T ss_dssp             SHHHHHHHHHHHHTCCTTTHHH-----HGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHH------HHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHhccCccc-----cCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHH------HHHHHHHH
Confidence            9889999999999887654332     235799999999999999999999999999976655433      23444555


Q ss_pred             hCCCCHHHHHHHHHHHHHhhc
Q 005282          328 LQSPDSQLKEMSAFALGRLAQ  348 (704)
Q Consensus       328 l~~~~~~v~~~a~~~L~~l~~  348 (704)
                      +.+.+..++...-.+|+.+..
T Consensus       226 ~~D~S~lv~~~V~egL~rl~l  246 (253)
T 2db0_A          226 LNDTSSLVNKTVKEGISRLLL  246 (253)
T ss_dssp             CCCSCHHHHHHHHHHHHHHHH
T ss_pred             hcCcHHHHHHHHHHHHHHHHH
Confidence            677788888888888888764

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.71  E-value=1.1e-06  Score=79.01  Aligned_cols=213  Identities=15%  Similarity=0.119  Sum_probs=159.7

Q ss_pred             CChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHH
Q 005282          235 NALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVH  314 (704)
Q Consensus       235 ~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~  314 (704)
                      +.+..|..+|++.|+.++..++.+|..+...-+.......-..+++.++.++.+.+..+...|+.+|..+..+.+-....
T Consensus        33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~  112 (265)
T 3b2a_A           33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKT  112 (265)
T ss_dssp             HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred             hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHH
Confidence            35788999999999999999999999998664444444555678999999999999999999999999998766644443


Q ss_pred             HHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcccC---C
Q 005282          315 IVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADN---E  391 (704)
Q Consensus       315 ~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~---~  391 (704)
                      +  ..+...|..+++++++-++.+++..++.+--....+      +.+..+.+++.|.+..++..+..+|.++++.   +
T Consensus       113 y--~Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~------~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~  184 (265)
T 3b2a_A          113 F--LKAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSK------LVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADS  184 (265)
T ss_dssp             H--HHHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCH------HHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSC
T ss_pred             H--HHHHHHHHHHhcCCCchHHHHHHHHhCcCCcccchH------HHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCH
Confidence            3  235788999999999999999999999993222111      2345678888999999999999999999862   2


Q ss_pred             chhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHHHHHHHHhccCCCccceee
Q 005282          392 DNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPDDCKTIF  471 (704)
Q Consensus       392 ~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l  471 (704)
                      +....                                      ++.-+-.++.+.|+.++..|..++-.+.+.+-.    
T Consensus       185 ~i~~~--------------------------------------I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~----  222 (265)
T 3b2a_A          185 GHLTL--------------------------------------ILDEIPSLLQNDNEFIVELALDVLEKALSFPLL----  222 (265)
T ss_dssp             CCGGG--------------------------------------TTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCC----
T ss_pred             HHHHH--------------------------------------HHHHHHHHHcCCCHHHHHHHHHHHHHHHcCccc----
Confidence            32322                                      223466788999999999999999999766432    


Q ss_pred             ecCCcHHHHHHHHh--------hcchhhhhhHHHHH
Q 005282          472 IDNNGLELLLGLLE--------STSVKQREESSVAL  499 (704)
Q Consensus       472 ~~~~~i~~L~~ll~--------~~~~~~~~~a~~~L  499 (704)
                        .+.++.+..++.        .+.|.++..|..+-
T Consensus       223 --~~~~~~~~~~~~~v~~l~~~~~~~~~~~ka~~v~  256 (265)
T 3b2a_A          223 --ENVKIELLKISRIVDGLVYREGAPIIRLKAKKVS  256 (265)
T ss_dssp             --SCCHHHHHHHHHHHHHGGGCSSCHHHHHHHHHHH
T ss_pred             --HhHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHH
Confidence              334444443332        35666776665443

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=98.66  E-value=5.2e-06  Score=84.33  Aligned_cols=343  Identities=13%  Similarity=0.149  Sum_probs=210.6

Q ss_pred             CCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcCh---hhhhhhhccCCc-HHHHH-HhcCCCHHHHHHHHHHH
Q 005282          143 GALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENA---NIKTRVRVEDGI-PPLVE-LLKFVDVKVQRAAAGAL  217 (704)
Q Consensus       143 g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~---~~~~~~~~~~~i-~~L~~-ll~~~~~~~~~~a~~~L  217 (704)
                      .++..++++|+....       .+++++.+..+..+...++   .....+...... ..+.. ++..+++-.+..+..++
T Consensus        77 ~~~~~~l~lL~~~~~-------~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~  149 (480)
T 1ho8_A           77 KTLIPLIHLLSTSDN-------EDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVV  149 (480)
T ss_dssp             TTHHHHHHHHHSCCC-------HHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHhhcCh-------HHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHH
Confidence            466788898887554       3899999999999987665   333333333222 22332 33445566667777776


Q ss_pred             HHhccCCchhhHHhHhcCChH--HHHHhhcC-CCHHHHHHHHHHHHHHhcCChhhHHHHHHcC--CHHHHHHHhcC----
Q 005282          218 RTLAFKNDENKKLIVECNALP--TLVLMLRS-EDASVHFEAVGVIGNLVHSSPSIKKEVILAG--ALQPVIGLLSS----  288 (704)
Q Consensus       218 ~~l~~~~~~~~~~~~~~~~i~--~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~--~l~~L~~ll~~----  288 (704)
                      ..++...+...+.+  ...+.  .+...|.. ++...+..++.+|..+... +..+..+.+.+  .++.++.++..    
T Consensus       150 ~ll~~~~~~~~~~l--~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~-~~~R~~f~~~~~~~~~~l~~il~~~~~~  226 (480)
T 1ho8_A          150 SLLVQNGLHNVKLV--EKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVI-PEYRDVIWLHEKKFMPTLFKILQRATDS  226 (480)
T ss_dssp             HHHTSTTTCCHHHH--HHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTS-HHHHHHHHTTHHHHHHHHHHHHHHHHC-
T ss_pred             HHHhccCCccHhHH--HHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcc-hhHHHHHHHcccchhHHHHHHHHHhhcc
Confidence            77653222211111  01122  34455554 3445566788899888866 67777776543  35666554431    


Q ss_pred             C-------------ChhHHHHHHHHHHHHhccCCcchHHHHhcCCh--HHHHHhhCC-CCHHHHHHHHHHHHHhhcCCc-
Q 005282          289 S-------------CSESKREAALLLGQFAAADSNSKVHIVQRGAV--RPLIEMLQS-PDSQLKEMSAFALGRLAQDTH-  351 (704)
Q Consensus       289 ~-------------~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i--~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~-  351 (704)
                      .             ...++.+++.+++-++. +++....+...++.  ..|+.+++. ...++.+.+..+|.|+..... 
T Consensus       227 ~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF-~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~  305 (480)
T 1ho8_A          227 QLATRIVATNSNHLGIQLQYHSLLLIWLLTF-NPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVK  305 (480)
T ss_dssp             ------------CCHHHHHHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSST
T ss_pred             ccccccccccCCCccHHHHHHHHHHHHHHHc-CHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccch
Confidence            1             23457888889998875 44455555555543  566676764 668899999999999997652 


Q ss_pred             hh----hhHHhhCChHHHHHhhcC---CChhHHHHHHHH-------HHHcccCCchhhHHHhhCCcccccccccccccch
Q 005282          352 NQ----AGIAQDGGILPLLKLLDS---KNGSLQHNAAFA-------LYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTK  417 (704)
Q Consensus       352 ~~----~~~~~~~~~~~L~~ll~~---~~~~v~~~a~~~-------L~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~~~  417 (704)
                      ..    ..++-.+...++++.|..   +|+++....-..       ...+++.++...++.. |-+.--    +.+... 
T Consensus       306 ~~~~~~~~~~~~~~~l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~s-G~L~WS----P~H~se-  379 (480)
T 1ho8_A          306 QHKKVIKQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDS-KLLCWS----PPHVDN-  379 (480)
T ss_dssp             THHHHHHHHHHHHCHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHH-TCCCCC----GGGGCH-
T ss_pred             hhhhHHHHHHHHccchHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhc-CCcccC----CCccch-
Confidence            11    222222333556666643   566655444332       2333444444444443 443321    111110 


Q ss_pred             HHHHHHHHHHHHHh---hcchhHHHHHHHhh----------ccHHHHHHHHHHHHhccC-CCccceeeecCCcHHHHHHH
Q 005282          418 DCVARTLKRLEEKV---HGRVLNHLLYLLRV----------ADRAVKRRVTLALAHLCA-PDDCKTIFIDNNGLELLLGL  483 (704)
Q Consensus       418 ~~~~~~~~~~~~~~---~~~~~~~L~~ll~~----------~~~~v~~~a~~~L~~l~~-~~~~~~~l~~~~~i~~L~~l  483 (704)
                          ........++   ...++..|+.++.+          .++.+..-||.-|+.+++ .|..+..+.+.||-..+.++
T Consensus       380 ----~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~L  455 (480)
T 1ho8_A          380 ----GFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMEL  455 (480)
T ss_dssp             ----HHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHH
T ss_pred             ----hHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHH
Confidence                1112222222   44678889999973          478888999999999976 77788887788999999999


Q ss_pred             HhhcchhhhhhHHHHHHHHhhhc
Q 005282          484 LESTSVKQREESSVALYKLATKA  506 (704)
Q Consensus       484 l~~~~~~~~~~a~~~L~~L~~~~  506 (704)
                      +.+++++|+..|..++..+..+.
T Consensus       456 m~h~d~~Vr~~AL~avQklm~~~  478 (480)
T 1ho8_A          456 LNHSDSRVKYEALKATQAIIGYT  478 (480)
T ss_dssp             TSCSSHHHHHHHHHHHHHHHHHS
T ss_pred             hcCCCHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999887654

>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1

Probab=98.61  E-value=1.4e-07  Score=74.91  Aligned_cols=80  Identities=20%  Similarity=0.371  Sum_probs=67.6

Q ss_pred             cEEEEE-cCeEeehhHHHHhhcCHHHHHhhcCCCCCCCCCceEcCCCCHHHHHHHHHHHhcCc--------------ccc
Q 005282          537 DVTFVV-EGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFIYTGN--------------VDV  601 (704)
Q Consensus       537 d~~~~~-~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~--------------~~~  601 (704)
                      -|+++. +|..|.+++.+ +..|.+++.|+.+++ +.....|++++++...++.+++|+|...              ..+
T Consensus         5 ~v~L~SsDg~~f~V~~~v-A~~S~~ik~ml~~~~-e~~~~~Iplp~V~~~iL~kVieyc~~h~~~~~~~~~~~~i~~w~v   82 (99)
T 1hv2_A            5 FVTLVSKDDKEYEISRSA-AMISPTLKAMIEGPF-RESKGRIELKQFDSHILEKAVEYLNYNLKYSGVSEDDDEIPEFEI   82 (99)
T ss_dssp             EEEEEETTTEEEEEEHHH-HTTCHHHHHHHHSST-TTCTTEEEETTSCHHHHHHHHHHHHHHHHHHHHCSSCSSCCCCCC
T ss_pred             EEEEEecCCCEEEECHHH-HHHhHHHHHHHhccc-ccCCCceecCCcCHHHHHHHHHHHHHhcccCCCccccccCCCccC
Confidence            366666 89999999997 779999999999866 5555789999999999999999998743              135


Q ss_pred             ChhhHHHHHHHHhhhCh
Q 005282          602 SVDIAQDLLRAADQYLL  618 (704)
Q Consensus       602 ~~~~~~~ll~~A~~~~~  618 (704)
                      +.+.+++|+.+|+|+++
T Consensus        83 d~~~lfeLi~AAnyLdI   99 (99)
T 1hv2_A           83 PTEMSLELLLAADYLSI   99 (99)
T ss_dssp             CHHHHHHHHHHHHHHCC
T ss_pred             CHHHHHHHHHHHHHhCc
Confidence            67889999999999874

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.60  E-value=1.5e-06  Score=78.10  Aligned_cols=188  Identities=19%  Similarity=0.160  Sum_probs=148.1

Q ss_pred             CCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHH
Q 005282          193 DGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKE  272 (704)
Q Consensus       193 ~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~  272 (704)
                      +.+..|..++.+.|+.++.+++.+|..+....+..-....-..+++.++.++.+.|..+...|+++|..+..+.|-....
T Consensus        33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~  112 (265)
T 3b2a_A           33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKT  112 (265)
T ss_dssp             HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred             hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHH
Confidence            34677999999999999999999999998754444444444557999999999999999999999999999876654444


Q ss_pred             HHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCch
Q 005282          273 VILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHN  352 (704)
Q Consensus       273 ~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~  352 (704)
                      +..  +...+..++.++++-.+.+++..++.+-..+ ..      .+++..+.+++.+.+..++..+..++.+++..+.+
T Consensus       113 y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~-~~------~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D  183 (265)
T 3b2a_A          113 FLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLE-DS------KLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSAD  183 (265)
T ss_dssp             HHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSC-CC------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSS
T ss_pred             HHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCccc-ch------HHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCC
Confidence            433  4678888999999999999999999883211 11      23578888999999999999999999999976543


Q ss_pred             hhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcccCC
Q 005282          353 QAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNE  391 (704)
Q Consensus       353 ~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  391 (704)
                      ...+  .+.+.-+-.++++.|+.+++.|+.+|..+.+.|
T Consensus       184 ~~i~--~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p  220 (265)
T 3b2a_A          184 SGHL--TLILDEIPSLLQNDNEFIVELALDVLEKALSFP  220 (265)
T ss_dssp             CCCG--GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred             HHHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc
Confidence            3211  234455677889999999999999999998643

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=98.59  E-value=6.3e-05  Score=83.56  Aligned_cols=266  Identities=15%  Similarity=0.120  Sum_probs=179.2

Q ss_pred             hhhHHHHHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHHHH
Q 005282           62 ETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQIIV  140 (704)
Q Consensus        62 ~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~~  140 (704)
                      +++..++.-|+.+|.-+..+... .      ++..|.+.|.+.+...+..  -.+.++..|+-.|+-+. ++. .     
T Consensus       406 s~~~~ik~GAllaLGli~ag~~~-~------~~~lL~~~L~~~~~~~~~~--~~~~ir~gAaLGLGla~~GS~-~-----  470 (963)
T 4ady_A          406 ASSRFIKGGSLYGLGLIYAGFGR-D------TTDYLKNIIVENSGTSGDE--DVDVLLHGASLGIGLAAMGSA-N-----  470 (963)
T ss_dssp             CSCHHHHHHHHHHHHHHTTTTTH-H------HHHHHHHHHHHHSSCCSCH--HHHHHHHHHHHHHHHHSTTCC-C-----
T ss_pred             CCcHHHHHHHHHHHHHhcCCCcH-H------HHHHHHHHHcCcccccccc--ccHHHHHHHHHHHHHHhcCCC-C-----
Confidence            34456677788888777664321 1      3677777777654100000  01368888999999986 321 1     


Q ss_pred             HcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhc-CCCHHHHHHHHHHHHH
Q 005282          141 DTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLK-FVDVKVQRAAAGALRT  219 (704)
Q Consensus       141 ~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~  219 (704)
                       ..++..|...+.+.+.        .+++.++.+|+.+..+....       .++..|+..+. ..+..+++.++.+|+.
T Consensus       471 -eev~e~L~~~L~dd~~--------~~~~~AalALGli~vGTgn~-------~ai~~LL~~~~e~~~e~vrR~aalgLGl  534 (963)
T 4ady_A          471 -IEVYEALKEVLYNDSA--------TSGEAAALGMGLCMLGTGKP-------EAIHDMFTYSQETQHGNITRGLAVGLAL  534 (963)
T ss_dssp             -HHHHHHHHHHHHTCCH--------HHHHHHHHHHHHHHTTCCCH-------HHHHHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHhcCCH--------HHHHHHHHHHhhhhcccCCH-------HHHHHHHHHHhccCcHHHHHHHHHHHHh
Confidence             1235667788876543        56678888888774322211       12445555543 5678899999999999


Q ss_pred             hccCCchhhHHhHhcCChHHHHHhhc-CCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHh-cCCChhHHHHH
Q 005282          220 LAFKNDENKKLIVECNALPTLVLMLR-SEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLL-SSSCSESKREA  297 (704)
Q Consensus       220 l~~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~~~~~a  297 (704)
                      +..+.++         .++.+++.|. +.++-+|..++.+++.-..+.....       .++.|+..+ .+.+..+++.|
T Consensus       535 l~~g~~e---------~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~-------aIq~LL~~~~~d~~d~VRraA  598 (963)
T 4ady_A          535 INYGRQE---------LADDLITKMLASDESLLRYGGAFTIALAYAGTGNNS-------AVKRLLHVAVSDSNDDVRRAA  598 (963)
T ss_dssp             HTTTCGG---------GGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHH-------HHHHHHHHHHHCSCHHHHHHH
T ss_pred             hhCCChH---------HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHH-------HHHHHHHHhccCCcHHHHHHH
Confidence            8765543         3556666665 6789999999888876554432221       255555554 46677899999


Q ss_pred             HHHHHHHhccCCcchHHHHhcCChHHHHHhh-CCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhH
Q 005282          298 ALLLGQFAAADSNSKVHIVQRGAVRPLIEML-QSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSL  376 (704)
Q Consensus       298 ~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v  376 (704)
                      +.+|+.+..++++         .++.++..+ .+.++.+|..++.+|+.++.+.....      .+..|..+.++.+..|
T Consensus       599 ViaLGlI~~g~~e---------~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~------aid~L~~L~~D~d~~V  663 (963)
T 4ady_A          599 VIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQS------AIDVLDPLTKDPVDFV  663 (963)
T ss_dssp             HHHHHHHTSSSCS---------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHH------HHHHHHHHHTCSSHHH
T ss_pred             HHHHHhhccCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHH------HHHHHHHHccCCCHHH
Confidence            9999998765543         355556544 57899999999999999997765422      4467788889999999


Q ss_pred             HHHHHHHHHHccc
Q 005282          377 QHNAAFALYGLAD  389 (704)
Q Consensus       377 ~~~a~~~L~~l~~  389 (704)
                      +..|+.+|+.+..
T Consensus       664 rq~Ai~ALG~Ig~  676 (963)
T 4ady_A          664 RQAAMIALSMILI  676 (963)
T ss_dssp             HHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999999975

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=98.57  E-value=4.2e-05  Score=84.89  Aligned_cols=319  Identities=14%  Similarity=0.094  Sum_probs=203.9

Q ss_pred             ChHHHHhhccCC-CcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHH
Q 005282           93 AVPALVEHLQTP-PQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRA  171 (704)
Q Consensus        93 ~i~~L~~lL~~~-~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a  171 (704)
                      ++..|-+.|... ..        ++.++.-|+.+|+-+..+...       .++..|...|.+.+......+.+.++..|
T Consensus       393 gl~~L~~yL~~~~s~--------~~~ik~GAllaLGli~ag~~~-------~~~~lL~~~L~~~~~~~~~~~~~~ir~gA  457 (963)
T 4ady_A          393 GKKVMAPYLPGSRAS--------SRFIKGGSLYGLGLIYAGFGR-------DTTDYLKNIIVENSGTSGDEDVDVLLHGA  457 (963)
T ss_dssp             HHHHHTTTSTTSCCS--------CHHHHHHHHHHHHHHTTTTTH-------HHHHHHHHHHHHHSSCCSCHHHHHHHHHH
T ss_pred             HHHHHHHhccccCCC--------cHHHHHHHHHHHHHhcCCCcH-------HHHHHHHHHHcCccccccccccHHHHHHH
Confidence            456666666532 11        458999999999999833221       13567788887665111111112678888


Q ss_pred             HHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhh-cCCCHH
Q 005282          172 ADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLML-RSEDAS  250 (704)
Q Consensus       172 ~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL-~~~~~~  250 (704)
                      +..|+-...++..       ..+++.|..++.+++..++..|..+|+.+-.+.. +..      ++..|++.+ .+.+..
T Consensus       458 aLGLGla~~GS~~-------eev~e~L~~~L~dd~~~~~~~AalALGli~vGTg-n~~------ai~~LL~~~~e~~~e~  523 (963)
T 4ady_A          458 SLGIGLAAMGSAN-------IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTG-KPE------AIHDMFTYSQETQHGN  523 (963)
T ss_dssp             HHHHHHHSTTCCC-------HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCC-CHH------HHHHHHHHHHHCSCHH
T ss_pred             HHHHHHHhcCCCC-------HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccC-CHH------HHHHHHHHHhccCcHH
Confidence            8889887643321       1346678888888887777788888887633211 111      234455543 356889


Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhc-CCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhC
Q 005282          251 VHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLS-SSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQ  329 (704)
Q Consensus       251 v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~  329 (704)
                      +++.++.+|+.+..+.++         .++.++..|. +.++-++..++.+++--..+. .+.      ..++.|++.+.
T Consensus       524 vrR~aalgLGll~~g~~e---------~~~~li~~L~~~~dp~vRygaa~alglAyaGT-Gn~------~aIq~LL~~~~  587 (963)
T 4ady_A          524 ITRGLAVGLALINYGRQE---------LADDLITKMLASDESLLRYGGAFTIALAYAGT-GNN------SAVKRLLHVAV  587 (963)
T ss_dssp             HHHHHHHHHHHHTTTCGG---------GGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTS-CCH------HHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhCCChH---------HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCC-CCH------HHHHHHHHHhc
Confidence            999999999998766554         3556666664 566777888888877544322 222      24666666654


Q ss_pred             -CCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHh-hcCCChhHHHHHHHHHHHcccCCchhhHHHhhCCccccc
Q 005282          330 -SPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKL-LDSKNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQ  407 (704)
Q Consensus       330 -~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~l-l~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~g~i~~l~  407 (704)
                       +.+..+|..|..+|+.+..+.+        ..++.++.+ +++.++.+|..++.+|+.++....+. .           
T Consensus       588 ~d~~d~VRraAViaLGlI~~g~~--------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~-~-----------  647 (963)
T 4ady_A          588 SDSNDDVRRAAVIALGFVLLRDY--------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ-S-----------  647 (963)
T ss_dssp             HCSCHHHHHHHHHHHHHHTSSSC--------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH-H-----------
T ss_pred             cCCcHHHHHHHHHHHHhhccCCH--------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH-H-----------
Confidence             5678899999999999876653        245666664 46789999999999999997533221 1           


Q ss_pred             ccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHHHHHHHHhccCCCccceeeecCCcHHHHHHHHhh-
Q 005282          408 DGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPDDCKTIFIDNNGLELLLGLLES-  486 (704)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~ll~~-  486 (704)
                                                 +++.|..++++.+..|+..|+.+|+.+.....+...-.-.+-++.|.....+ 
T Consensus       648 ---------------------------aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk  700 (963)
T 4ady_A          648 ---------------------------AIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNK  700 (963)
T ss_dssp             ---------------------------HHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCS
T ss_pred             ---------------------------HHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcc
Confidence                                       3445777888999999999999999994432222100001224445555543 


Q ss_pred             -cchhhhhhHHHHHHHHh
Q 005282          487 -TSVKQREESSVALYKLA  503 (704)
Q Consensus       487 -~~~~~~~~a~~~L~~L~  503 (704)
                       .++..+..+..+..-+.
T Consensus       701 ~~d~~~~fga~iAqGll~  718 (963)
T 4ady_A          701 HQEGLAKFGACVAQGIMN  718 (963)
T ss_dssp             SSCHHHHHHHHHHHHHHT
T ss_pred             cccHHHHHHHHHHHHHHh
Confidence             34557777777766653

>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B

Probab=98.56  E-value=1.3e-07  Score=74.67  Aligned_cols=80  Identities=23%  Similarity=0.362  Sum_probs=63.1

Q ss_pred             EEEEE-cCeEeehhHHHHhhcCHHHHHhhcC--CCCCCCCCceEcCCCCHHHHHHHHHHHhcCc-----------cccCh
Q 005282          538 VTFVV-EGKQFYAHRICLLASSDAFRAMFDG--GYKEKNAKDVEIPNIRWNVFELMMRFIYTGN-----------VDVSV  603 (704)
Q Consensus       538 ~~~~~-~~~~~~~hk~iL~~~s~~f~~~f~~--~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~-----------~~~~~  603 (704)
                      ++++. +|..|.+++.+ +..|++++.|+.+  .+.|+....|++++++...++.+++|+|...           ..++.
T Consensus         3 v~L~SsDg~~f~V~~~~-A~~S~~ik~ml~~~~~~~e~~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~i~~w~vd~   81 (96)
T 2fnj_C            3 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAP   81 (96)
T ss_dssp             EEEECTTSCEEEEEHHH-HTTSHHHHHHHHCC--------CEEECSSCCHHHHHHHHHHHHHHHHHHSCCSCCCCCCCCT
T ss_pred             EEEEecCCCEEEeCHHH-HHHhHHHHHHHHccCCcccccCCceeCCCCCHHHHHHHHHHHHHccccCCCcccCCCcccCH
Confidence            45555 89999999997 7799999999985  3356666799999999999999999998743           24677


Q ss_pred             hhHHHHHHHHhhhCh
Q 005282          604 DIAQDLLRAADQYLL  618 (704)
Q Consensus       604 ~~~~~ll~~A~~~~~  618 (704)
                      +.+++|+.+|+|+++
T Consensus        82 ~~l~eLi~AAnyLdI   96 (96)
T 2fnj_C           82 EIALELLMAANFLDC   96 (96)
T ss_dssp             TTHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHhCc
Confidence            899999999999874

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=98.55  E-value=1.3e-05  Score=68.78  Aligned_cols=215  Identities=20%  Similarity=0.239  Sum_probs=160.0

Q ss_pred             HcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhc-CCCHHHHHHHHHHHHH
Q 005282          141 DTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLK-FVDVKVQRAAAGALRT  219 (704)
Q Consensus       141 ~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~  219 (704)
                      +...+..++.+|.+.        .|.++.+|+..+..++..-++...-     .+..|+-+++ +.....-.....+++.
T Consensus        30 d~~~l~~lI~~LDDD--------lwtV~kNAl~vi~~i~~~~~el~ep-----l~~kL~vm~~ksEaIpltqeIa~a~G~   96 (253)
T 2db0_A           30 DESVLKKLIELLDDD--------LWTVVKNAISIIMVIAKTREDLYEP-----MLKKLFSLLKKSEAIPLTQEIAKAFGQ   96 (253)
T ss_dssp             CHHHHHHHHHHTTCS--------CHHHHHHHHHHHHHHHTTCGGGHHH-----HHHHHHHHHHHCCSHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHhccH--------HHHHHHhHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhhcccCchHHHHHHHHhH
Confidence            344566777777654        3799999999999999877765442     3445666655 6667777778889999


Q ss_pred             hccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHH
Q 005282          220 LAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAAL  299 (704)
Q Consensus       220 l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~  299 (704)
                      ++.-+|+....     .+|.+..-.+-+++.++.....+|..++..+|....     +++.-+..++.+++..-+..|+.
T Consensus        97 la~i~Pe~v~~-----vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltskd~~Dkl~aLn  166 (253)
T 2db0_A           97 MAKEKPELVKS-----MIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSKNREDKLTALN  166 (253)
T ss_dssp             HHHHCHHHHHH-----HHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCSSHHHHHHHHH
T ss_pred             HHHhCHHHHHh-----hHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCChHHHHHHHH
Confidence            98756654442     467788777888999999999999999998887654     34566888898888666766666


Q ss_pred             HHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHH
Q 005282          300 LLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHN  379 (704)
Q Consensus       300 ~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~  379 (704)
                      .++.+..   .....+  ...+|.|..+|.+.+.-+|..|..+|.+++...+.-..++     ...+.-+++.+..+++.
T Consensus       167 Fi~alGe---n~~~yv--~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii-----~~kl~e~~D~S~lv~~~  236 (253)
T 2db0_A          167 FIEAMGE---NSFKYV--NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVV-----IKRLEELNDTSSLVNKT  236 (253)
T ss_dssp             HHHTCCT---TTHHHH--GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHH-----HHHHHHCCCSCHHHHHH
T ss_pred             HHHHHhc---cCcccc--CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHH-----HHHHHHhcCcHHHHHHH
Confidence            6665532   222222  4679999999999999999999999999998766544333     33455667888889998


Q ss_pred             HHHHHHHcc
Q 005282          380 AAFALYGLA  388 (704)
Q Consensus       380 a~~~L~~l~  388 (704)
                      +...|..++
T Consensus       237 V~egL~rl~  245 (253)
T 2db0_A          237 VKEGISRLL  245 (253)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888888775

>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*

Probab=98.53  E-value=5.9e-07  Score=79.29  Aligned_cols=97  Identities=16%  Similarity=0.271  Sum_probs=74.8

Q ss_pred             cEEEEE-cCeEeehhHHHHhhcCHHHHHhhcCCCC----CCCCCceEcCCCCHHHHHHHHHHHhcCc-------------
Q 005282          537 DVTFVV-EGKQFYAHRICLLASSDAFRAMFDGGYK----EKNAKDVEIPNIRWNVFELMMRFIYTGN-------------  598 (704)
Q Consensus       537 d~~~~~-~~~~~~~hk~iL~~~s~~f~~~f~~~~~----e~~~~~i~l~~~~~~~~~~~l~~~Y~~~-------------  598 (704)
                      .|.++. +|..|.+++.+ +..|.+++.|+.....    +.....|++++++...+..+++|+|...             
T Consensus         8 ~i~L~SsDG~~F~V~~~v-A~~S~tIk~ml~~~~~~~~~~~~~~~IplpnV~s~iL~kVieyc~~h~~~~~~~~~~~~~~   86 (169)
T 3v7d_A            8 NVVLVSGEGERFTVDKKI-AERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSR   86 (169)
T ss_dssp             EEEEECTTCCEEEEEHHH-HTTSHHHHHHHHC-----------CEEECTTCCHHHHHHHHHHHHHTTTCCCCC-------
T ss_pred             eEEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcCcccccccCCCceeeCCCCHHHHHHHHHHHHHcccCCCccccccccc
Confidence            455655 78999999998 6689999999985332    2334689999999999999999997643             


Q ss_pred             ------------cccChhhHHHHHHHHhhhChHhHHHHHHHHHHhhCC
Q 005282          599 ------------VDVSVDIAQDLLRAADQYLLEGLKRLCEYSIAQIIS  634 (704)
Q Consensus       599 ------------~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~  634 (704)
                                  +.++.+.+++|+.+|+|+++.+|.+.|...+...+.
T Consensus        87 ~~~~i~~wD~~Fl~vd~~~LfeLi~AAnyLdIk~Lldl~c~~vA~~ik  134 (169)
T 3v7d_A           87 KSAPVDSWDREFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIR  134 (169)
T ss_dssp             -CCCCCHHHHHHTCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred             ccccccHHHHHHHcCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHc
Confidence                        134557789999999999999999999888855443

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.49  E-value=8.3e-07  Score=85.19  Aligned_cols=185  Identities=11%  Similarity=0.073  Sum_probs=138.9

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhc-CCCHHHHHHHHHHHHHHhcCChhhHHHHH
Q 005282          196 PPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLR-SEDASVHFEAVGVIGNLVHSSPSIKKEVI  274 (704)
Q Consensus       196 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  274 (704)
                      +.+.+.+.+.++..|..|+..|..++.+.+...... -..+++.|...+. +.+..++..|+.+++.++..-...... .
T Consensus        18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~-~   95 (242)
T 2qk2_A           18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSN-Y   95 (242)
T ss_dssp             TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHH-H
T ss_pred             HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHH-H
Confidence            458888899999999999999999986533211100 1234777888885 899999999999999998532111111 1


Q ss_pred             HcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCc-hh
Q 005282          275 LAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTH-NQ  353 (704)
Q Consensus       275 ~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~  353 (704)
                      -..+++.++..+.+.+..++..+..+|..++....  .     ..+++.+...+++.++.++..++..|..+..... ..
T Consensus        96 ~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~-----~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~  168 (242)
T 2qk2_A           96 ASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--L-----EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTA  168 (242)
T ss_dssp             HHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--H-----HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGG
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--H-----HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCC
Confidence            23478999999999999999999999999975322  1     2357888999999999999999999999765432 21


Q ss_pred             -hhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHccc
Q 005282          354 -AGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLAD  389 (704)
Q Consensus       354 -~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~  389 (704)
                       ..-.-...++.++.++.+.++++|..|..++..++.
T Consensus       169 ~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~  205 (242)
T 2qk2_A          169 LNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIK  205 (242)
T ss_dssp             CCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence             111223567889999999999999999999999874

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=98.45  E-value=4.2e-06  Score=83.29  Aligned_cols=244  Identities=11%  Similarity=0.038  Sum_probs=154.7

Q ss_pred             hHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHH
Q 005282           94 VPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAAD  173 (704)
Q Consensus        94 i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~  173 (704)
                      ...+++++++++.          ..+.-..-.+.+++..++-.  +   =++..+.+=+.++++        -++..|+.
T Consensus        70 f~~v~kl~~s~d~----------~lKrLvYLyl~~~~~~~~e~--i---Lv~Nsl~kDl~~~N~--------~iR~lALR  126 (355)
T 3tjz_B           70 FFAMTKLFQSNDP----------TLRRMCYLTIKEMSCIAEDV--I---IVTSSLTKDMTGKED--------SYRGPAVR  126 (355)
T ss_dssp             HHHHHGGGGCCCH----------HHHHHHHHHHHHHTTTSSCG--G---GGHHHHHHHHHSSCH--------HHHHHHHH
T ss_pred             HHHHHHHhcCCCH----------HHHHHHHHHHHHhCCCHHHH--H---HHHHHHHhhcCCCcH--------hHHHHHHH
Confidence            5777889999865          88888888888888443221  1   134556666665543        88999999


Q ss_pred             HHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHH
Q 005282          174 AITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHF  253 (704)
Q Consensus       174 ~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~  253 (704)
                      +|+++..  ++.-     ....+.+.+.+.+.++.++..|+-+...+....|+..+     +++..+-+++.+.++.|+.
T Consensus       127 tL~~I~~--~~m~-----~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~-----~~~~~l~~ll~d~n~~V~~  194 (355)
T 3tjz_B          127 ALCQITD--STML-----QAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVK-----RWVNEAQEAASSDNIMVQY  194 (355)
T ss_dssp             HHHHHCC--TTTH-----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHH-----TTHHHHHHHTTCSSHHHHH
T ss_pred             HHhcCCC--HHHH-----HHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHH-----HHHHHHHHHhcCCCccHHH
Confidence            9999974  2221     23456678888899999999999999999876666433     5788899999999999999


Q ss_pred             HHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCC---ChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCC
Q 005282          254 EAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSS---CSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQS  330 (704)
Q Consensus       254 ~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~  330 (704)
                      .|+.+|..+...+..         .+..++..+...   ++-.+...+..+..++..+++    -.....++.+..++++
T Consensus       195 ~Al~lL~ei~~~d~~---------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~----~~~~~~~~~l~~~L~~  261 (355)
T 3tjz_B          195 HALGLLYHVRKNDRL---------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDG----SRDSPLFDFIESCLRN  261 (355)
T ss_dssp             HHHHHHHHHHTTCHH---------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC---------------------CCCCC
T ss_pred             HHHHHHHHHHhhchH---------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccch----hhHHHHHHHHHHHHcC
Confidence            999999999876432         133344444332   233344444444444332211    1224578888888999


Q ss_pred             CCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHccc
Q 005282          331 PDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLAD  389 (704)
Q Consensus       331 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~  389 (704)
                      .++.|.-+|+.++..+...+..   . ...++..+..++.++++++|..|+..|..++.
T Consensus       262 ~~~aVvyEa~k~I~~l~~~~~~---~-~~~a~~~L~~fLss~d~niryvaLr~L~~l~~  316 (355)
T 3tjz_B          262 KHEMVVYEAASAIVNLPGCSAK---E-LAPAVSVLQLFCSSPKAALRYAAVRTLNKVAM  316 (355)
T ss_dssp             SSHHHHHHHHHHHTC---------------CCCTHHHHHHSSSSSSHHHHHHCC-----
T ss_pred             CChHHHHHHHHHHHhccCCCHH---H-HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence            9999999999999998653221   1 12345566777888999999999998888875

>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.42  E-value=2e-07  Score=75.53  Aligned_cols=60  Identities=15%  Similarity=0.143  Sum_probs=54.4

Q ss_pred             HHhhCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCChhhhccchhcHHHHHHH
Q 005282          629 IAQIISVENIMLMYELSEAYNATTLKQSCILFILEKFDKMRNKPWFFRLIRCVLPEIRNY  688 (704)
Q Consensus       629 l~~~~~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~L~~~~~~~l~~~  688 (704)
                      +.+.++++||+.++.+|+.|++++|.+.|.+||.+||.++.++++|.+||.+.+.+++..
T Consensus         4 ~~~~L~~~NCl~i~~~A~~~~~~~L~~~a~~fi~~nF~~v~~~~eFl~L~~~~L~~lL~s   63 (105)
T 2eqx_A            4 GSSGVQVGNCLQVMWLADRHSDPELYTAAKHCAKTHLAQLQNTEEFLHLPHRLLTDIISD   63 (105)
T ss_dssp             CCCCCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTCHHHHTSHHHHHSCHHHHHHHHHT
T ss_pred             hhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcccHhhCCHHHHHHHHcC
Confidence            345789999999999999999999999999999999999999999999988877766653

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.39  E-value=1.9e-06  Score=82.62  Aligned_cols=185  Identities=16%  Similarity=0.211  Sum_probs=136.4

Q ss_pred             HHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhc-CCCHHHHHHHHHHHHHhccCCc
Q 005282          147 HLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLK-FVDVKVQRAAAGALRTLAFKND  225 (704)
Q Consensus       147 ~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~  225 (704)
                      .+.+.+.+.        +|..+..++..|..+....+...... ....++.|...+. +.+..++..|+.++..++..-.
T Consensus        19 ~l~~~l~s~--------~w~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~   89 (242)
T 2qk2_A           19 DFYDKLEEK--------KWTLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLA   89 (242)
T ss_dssp             THHHHHTCS--------SHHHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHG
T ss_pred             HHHhhhccC--------CHHHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHh
Confidence            455666543        36999999999999987533321111 1244677888884 8999999999999999995221


Q ss_pred             hhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHh
Q 005282          226 ENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFA  305 (704)
Q Consensus       226 ~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~  305 (704)
                      ..- .-.-..+++.++..+.+.++.+|..+..+|..++...+ .      ..+++.+...+.+.++.++..++..|..+.
T Consensus        90 ~~~-~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~-~------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l  161 (242)
T 2qk2_A           90 KRF-SNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS-L------EAQQESIVESLSNKNPSVKSETALFIARAL  161 (242)
T ss_dssp             GGG-HHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-H------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred             hhH-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC-H------HHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence            111 11223468999999999999999999999999986532 1      135778888999999999999999999965


Q ss_pred             ccC-Ccc-hHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcC
Q 005282          306 AAD-SNS-KVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQD  349 (704)
Q Consensus       306 ~~~-~~~-~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~  349 (704)
                      ... +.. ....+ ..+++.|..++.+.++++|..|..+++.++..
T Consensus       162 ~~~~~~~~~~~~l-~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~  206 (242)
T 2qk2_A          162 TRTQPTALNKKLL-KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKL  206 (242)
T ss_dssp             TTCCGGGCCHHHH-HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHcCCCCccHHHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence            443 221 11222 35789999999999999999999999998854

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.34  E-value=3.1e-06  Score=81.03  Aligned_cols=191  Identities=7%  Similarity=0.017  Sum_probs=138.0

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHH-hccCCchhhHHhHh-cCChHHHHHhh-cCCCHHHHHHHHHHHHHHhcCCh--hhH-
Q 005282          197 PLVELLKFVDVKVQRAAAGALRT-LAFKNDENKKLIVE-CNALPTLVLML-RSEDASVHFEAVGVIGNLVHSSP--SIK-  270 (704)
Q Consensus       197 ~L~~ll~~~~~~~~~~a~~~L~~-l~~~~~~~~~~~~~-~~~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~--~~~-  270 (704)
                      .+.+.+.+.++.-|..|+..|.. ++.+.+.......+ ..++..|.+.+ ++.+..++..|+.+|+.++.+-.  ... 
T Consensus        20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~   99 (249)
T 2qk1_A           20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK   99 (249)
T ss_dssp             THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred             hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence            35667789999999999999999 87543332210001 13477788888 68899999999999999985321  221 


Q ss_pred             HHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC
Q 005282          271 KEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDT  350 (704)
Q Consensus       271 ~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  350 (704)
                      ..  ...+++.++..+.+....++..+..++..++...+.......-..+++.|...+++.++.++..++.+|..++...
T Consensus       100 ~y--~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~  177 (249)
T 2qk1_A          100 DY--VSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEE  177 (249)
T ss_dssp             HH--HHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHC
T ss_pred             HH--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHc
Confidence            11  1236889999999988999998888888887643221100000135788889999999999999999999998654


Q ss_pred             chh-hh--HHh-hCChHHHHHhhcCCChhHHHHHHHHHHHccc
Q 005282          351 HNQ-AG--IAQ-DGGILPLLKLLDSKNGSLQHNAAFALYGLAD  389 (704)
Q Consensus       351 ~~~-~~--~~~-~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~  389 (704)
                      ... ..  -.- ...++.+.+++.++++++|..|..++..++.
T Consensus       178 ~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~  220 (249)
T 2qk1_A          178 KDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK  220 (249)
T ss_dssp             CSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             CCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            421 11  122 5677889999999999999999999999874

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=98.29  E-value=1.5e-05  Score=79.34  Aligned_cols=246  Identities=11%  Similarity=0.067  Sum_probs=161.7

Q ss_pred             CcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 005282          194 GIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEV  273 (704)
Q Consensus       194 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~  273 (704)
                      ....+++++.++|..+++-.--.+.+++...++   .+.   ++..+.+=++++++-+|-.|+++|+++...  +..+  
T Consensus        69 lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e---~iL---v~Nsl~kDl~~~N~~iR~lALRtL~~I~~~--~m~~--  138 (355)
T 3tjz_B           69 AFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAED---VII---VTSSLTKDMTGKEDSYRGPAVRALCQITDS--TMLQ--  138 (355)
T ss_dssp             HHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSC---GGG---GHHHHHHHHHSSCHHHHHHHHHHHHHHCCT--TTHH--
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHH---HHH---HHHHHHhhcCCCcHhHHHHHHHHHhcCCCH--HHHH--
Confidence            345577889999999999999999998863222   121   367788888999999999999999999743  3333  


Q ss_pred             HHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchh
Q 005282          274 ILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQ  353 (704)
Q Consensus       274 ~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~  353 (704)
                         ...+.+...+.+.++-++..|+.+...+....++.    . .++++.+..++.+.++.++.+|..+|..+...+.. 
T Consensus       139 ---~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~----v-~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~-  209 (355)
T 3tjz_B          139 ---AIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDV----V-KRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRL-  209 (355)
T ss_dssp             ---HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHH----H-HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHH-
T ss_pred             ---HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHH----H-HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchH-
Confidence               24566788889999999999999999997654442    2 36899999999999999999999999999875421 


Q ss_pred             hhHHhhCChHHHHHhhcCC---ChhHHHHHHHHHHHcccCC--chhhHHHhhCCcccccccccccccchHHHHHHHHHHH
Q 005282          354 AGIAQDGGILPLLKLLDSK---NGSLQHNAAFALYGLADNE--DNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLE  428 (704)
Q Consensus       354 ~~~~~~~~~~~L~~ll~~~---~~~v~~~a~~~L~~l~~~~--~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~  428 (704)
                             .+..++..+..+   ++..+...+..+..+....  +....                                
T Consensus       210 -------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~~~--------------------------------  250 (355)
T 3tjz_B          210 -------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRDSP--------------------------------  250 (355)
T ss_dssp             -------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC-------------------------------------------
T ss_pred             -------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhhHHH--------------------------------
Confidence                   233444444332   4555555555555554321  11111                                


Q ss_pred             HHhhcchhHHHHHHHhhccHHHHHHHHHHHHhccCCCccceeeecCCcHHHHHHHHhhcchhhhhhHHHHHHHHhhhcC
Q 005282          429 EKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPDDCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLATKAT  507 (704)
Q Consensus       429 ~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~  507 (704)
                            +++.+..+++..++.|..+|+.+|..+...+..  .  ...++..|..++.++++.+|-.|...|..+....|
T Consensus       251 ------~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~--~--~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P  319 (355)
T 3tjz_B          251 ------LFDFIESCLRNKHEMVVYEAASAIVNLPGCSAK--E--LAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHP  319 (355)
T ss_dssp             ------------CCCCCSSHHHHHHHHHHHTC---------------CCCTHHHHHHSSSSSSHHHHHHCC--------
T ss_pred             ------HHHHHHHHHcCCChHHHHHHHHHHHhccCCCHH--H--HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCc
Confidence                  223344556778899999999999998542211  1  12456677888888999999999888888877654

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=98.27  E-value=0.00013  Score=74.17  Aligned_cols=261  Identities=15%  Similarity=0.190  Sum_probs=160.2

Q ss_pred             hHHHHHHHHHHHhhc-CChhhHHHHHHcCCcH--HHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhcc
Q 005282          116 HEVEKECAFALGLLA-VKPEHQQIIVDTGALP--HLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVE  192 (704)
Q Consensus       116 ~~v~~~a~~~L~~l~-~~~~~~~~~~~~g~l~--~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~  192 (704)
                      .-....+..++..++ .++...+.+-  ..+.  -++..|.+...       .+.+..++.+|..+.. .++.|..+...
T Consensus       139 ~~~ll~a~~l~~ll~~~~~~~~~~l~--~l~~~~~~~~~L~~~~~-------~~~~~i~v~~L~~Ll~-~~~~R~~f~~~  208 (480)
T 1ho8_A          139 QTVLISGFNVVSLLVQNGLHNVKLVE--KLLKNNNLINILQNIEQ-------MDTCYVCIRLLQELAV-IPEYRDVIWLH  208 (480)
T ss_dssp             HHHHHHHHHHHHHHTSTTTCCHHHHH--HHHHCHHHHHHHHCTTC-------HHHHHHHHHHHHHHHT-SHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHHhccCCccHhHHH--HHhhhHHHHHHhccccC-------CchHHHHHHHHHHHhc-chhHHHHHHHc
Confidence            355666666666665 2222111111  1112  35555554221       1445578888888886 67778877765


Q ss_pred             CC--cHHHHHHhcC-----------------CCHHHHHHHHHHHHHhccCCchhhHHhHhcCCh--HHHHHhhc-CCCHH
Q 005282          193 DG--IPPLVELLKF-----------------VDVKVQRAAAGALRTLAFKNDENKKLIVECNAL--PTLVLMLR-SEDAS  250 (704)
Q Consensus       193 ~~--i~~L~~ll~~-----------------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i--~~L~~lL~-~~~~~  250 (704)
                      ++  ++.++.+++.                 ....++..++-++|.++. .++..+.+...++.  +.|+..++ +..+.
T Consensus       209 ~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF-~~~~~~~l~~~~i~~~~~L~~i~k~s~KEK  287 (480)
T 1ho8_A          209 EKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTF-NPVFANELVQKYLSDFLDLLKLVKITIKEK  287 (480)
T ss_dssp             HHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHHHHCCSHH
T ss_pred             ccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHHHc-CHHHHHHHHhcchHHHHHHHHHHHhhccch
Confidence            43  6666554431                 135678999999999997 66677777666543  56666676 56799


Q ss_pred             HHHHHHHHHHHHhcCCh----hhHH-HHHHcCCHHHHHHHhcCC---ChhHHHHHHHHHHHH-------h----------
Q 005282          251 VHFEAVGVIGNLVHSSP----SIKK-EVILAGALQPVIGLLSSS---CSESKREAALLLGQF-------A----------  305 (704)
Q Consensus       251 v~~~a~~~L~~l~~~~~----~~~~-~~~~~~~l~~L~~ll~~~---~~~~~~~a~~~L~~l-------~----------  305 (704)
                      +.+.++.+|.|+....+    .... .+...++ ..++..|...   |+++....-.....+       +          
T Consensus       288 vvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~  366 (480)
T 1ho8_A          288 VSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELD  366 (480)
T ss_dssp             HHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHh
Confidence            99999999999997652    1112 2333344 4455556432   444433222211111       1          


Q ss_pred             ----ccCCcch---------HHHHh--cCChHHHHHhhCC----------CCHHHHHHHHHHHHHhhcCC-chhhhHHhh
Q 005282          306 ----AADSNSK---------VHIVQ--RGAVRPLIEMLQS----------PDSQLKEMSAFALGRLAQDT-HNQAGIAQD  359 (704)
Q Consensus       306 ----~~~~~~~---------~~~~~--~~~i~~L~~ll~~----------~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~  359 (704)
                          .-++..+         ..+.+  ..++..|+++|.+          .++.+...||.=|+.++.+. .++..+-+.
T Consensus       367 sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~l  446 (480)
T 1ho8_A          367 SKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKT  446 (480)
T ss_dssp             HTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHH
T ss_pred             cCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHc
Confidence                0011111         11112  2457889999973          36888899999999999764 455555556


Q ss_pred             CChHHHHHhhcCCChhHHHHHHHHHHHcc
Q 005282          360 GGILPLLKLLDSKNGSLQHNAAFALYGLA  388 (704)
Q Consensus       360 ~~~~~L~~ll~~~~~~v~~~a~~~L~~l~  388 (704)
                      |+-..+++++.+.|++|+.+|+.++..+.
T Consensus       447 g~K~~VM~Lm~h~d~~Vr~~AL~avQklm  475 (480)
T 1ho8_A          447 GGKADIMELLNHSDSRVKYEALKATQAII  475 (480)
T ss_dssp             SHHHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            88888999999999999999999998764

>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}

Probab=98.26  E-value=6.2e-06  Score=66.68  Aligned_cols=95  Identities=17%  Similarity=0.247  Sum_probs=76.6

Q ss_pred             ccEEEEEcCeEeehhHHHHhhcC-HHHHHhhcCCCC----CCCCCceEcCCCCHHHHHHHHHHHhcCccccChh-hHHHH
Q 005282          536 SDVTFVVEGKQFYAHRICLLASS-DAFRAMFDGGYK----EKNAKDVEIPNIRWNVFELMMRFIYTGNVDVSVD-IAQDL  609 (704)
Q Consensus       536 ~d~~~~~~~~~~~~hk~iL~~~s-~~f~~~f~~~~~----e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~-~~~~l  609 (704)
                      .-|.+-|||+.|...+..|+... .+|.+||.+.+.    .....++-+ |-++..|..+|.|+.+|++.++.+ ....+
T Consensus         6 ~~v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~d~~~~~fi-DRdp~~F~~IL~~lr~g~l~~p~~~~~~~l   84 (107)
T 3drz_A            6 KWVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLI-DRDPTYFGPVLNYLRHGKLVINKDLAEEGV   84 (107)
T ss_dssp             CEEEEEETTEEEEEEHHHHTSSTTSHHHHHHTTCGGGGGGBCTTSCEEE-CSCHHHHHHHHHHHHHSCCCCCTTSCHHHH
T ss_pred             CEEEEEECCEEEEECHHHHhcCCCcchhHHHhcCCCCCcCCCCCceEEe-cCChHHHHHHHHHhCCCeeCCCCCCCHHHH
Confidence            34778899999999999998775 578999986531    112345554 679999999999999999887654 35789


Q ss_pred             HHHHhhhChHhHHHHHHHHHHh
Q 005282          610 LRAADQYLLEGLKRLCEYSIAQ  631 (704)
Q Consensus       610 l~~A~~~~~~~l~~~c~~~l~~  631 (704)
                      ++-|.+|++++|++.|++.|.+
T Consensus        85 ~~Ea~fy~l~~L~~~l~~~i~~  106 (107)
T 3drz_A           85 LEEAEFYNITSLIKLVKDKIRE  106 (107)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHhc
Confidence            9999999999999999988754

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.24  E-value=1.2e-07  Score=81.17  Aligned_cols=122  Identities=20%  Similarity=0.218  Sum_probs=92.7

Q ss_pred             ccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhH
Q 005282          191 VEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIK  270 (704)
Q Consensus       191 ~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~  270 (704)
                      ....++.+..+|+++++.++..|+++|..+..  +          .++.|+.+|.++++.+|..++++|+++..  +   
T Consensus        10 ~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~--~----------~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--~---   72 (131)
T 1te4_A           10 HSSGLVPRGSHMADENKWVRRDVSTALSRMGD--E----------AFEPLLESLSNEDWRIRGAAAWIIGNFQD--E---   72 (131)
T ss_dssp             -----------CCSSCCCSSSSCCSSTTSCSS--T----------THHHHHHGGGCSCHHHHHHHHHHHGGGCS--H---
T ss_pred             ccccHHHHHHHhcCCCHHHHHHHHHHHHHhCc--h----------HHHHHHHHHcCCCHHHHHHHHHHHHhcCC--H---
Confidence            34667889999999999999999988887642  1          26889999999999999999999998852  1   


Q ss_pred             HHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHh
Q 005282          271 KEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRL  346 (704)
Q Consensus       271 ~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l  346 (704)
                            +.++.|+..+.++++.++..|+++|+++..           ...++.|..+++++++.++..|+.+|.++
T Consensus        73 ------~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~-----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i  131 (131)
T 1te4_A           73 ------RAVEPLIKLLEDDSGFVRSGAARSLEQIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETH  131 (131)
T ss_dssp             ------HHHHHHHHHHHHCCTHHHHHHHHHHHHHCS-----------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred             ------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence                  247888999999999999999999998841           23578899999999999999999998753

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.21  E-value=1.3e-07  Score=81.00  Aligned_cols=121  Identities=20%  Similarity=0.239  Sum_probs=93.7

Q ss_pred             cCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchH
Q 005282          234 CNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKV  313 (704)
Q Consensus       234 ~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~  313 (704)
                      ...++.+..+|.++++.+|..|+++|+.+...            .++.|+.++.++++.++..|+++|+++..       
T Consensus        11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~------------~~~~L~~~L~d~~~~vR~~A~~aL~~~~~-------   71 (131)
T 1te4_A           11 SSGLVPRGSHMADENKWVRRDVSTALSRMGDE------------AFEPLLESLSNEDWRIRGAAAWIIGNFQD-------   71 (131)
T ss_dssp             ----------CCSSCCCSSSSCCSSTTSCSST------------THHHHHHGGGCSCHHHHHHHHHHHGGGCS-------
T ss_pred             cccHHHHHHHhcCCCHHHHHHHHHHHHHhCch------------HHHHHHHHHcCCCHHHHHHHHHHHHhcCC-------
Confidence            44678899999999999999999999876421            26889999999999999999999998742       


Q ss_pred             HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHc
Q 005282          314 HIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGL  387 (704)
Q Consensus       314 ~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l  387 (704)
                          ...++.|+..+.++++.++..|+++|+++..          ...++.|..++++.++.++..|+.+|..+
T Consensus        72 ----~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i  131 (131)
T 1te4_A           72 ----ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETH  131 (131)
T ss_dssp             ----HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred             ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence                2358899999999999999999999999862          23567899999999999999999998754

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.19  E-value=3.7e-06  Score=80.44  Aligned_cols=193  Identities=11%  Similarity=0.061  Sum_probs=136.1

Q ss_pred             HHHHhcCCChhHHHHHHHHHHH-HhccCCcchHHHHh-cCChHHHHHhh-CCCCHHHHHHHHHHHHHhhcCCc-hhhh-H
Q 005282          282 VIGLLSSSCSESKREAALLLGQ-FAAADSNSKVHIVQ-RGAVRPLIEML-QSPDSQLKEMSAFALGRLAQDTH-NQAG-I  356 (704)
Q Consensus       282 L~~ll~~~~~~~~~~a~~~L~~-l~~~~~~~~~~~~~-~~~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~-~~~~-~  356 (704)
                      +...+.+.++..|..|+..|.. ++.+.+.....-.+ ..++..|...+ ++.+..++..|+.+|+.++.+-. .... -
T Consensus        21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~  100 (249)
T 2qk1_A           21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD  100 (249)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred             HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence            4556788999999999999999 87543332100001 13577788888 68899999999999999995433 2221 2


Q ss_pred             HhhCChHHHHHhhcCCChhHHHHHHHHHHHcccCC-chhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcch
Q 005282          357 AQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNE-DNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRV  435 (704)
Q Consensus       357 ~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (704)
                      .....++.++..+.+..+.|+..+..+|..++..- .....    +.++                             .+
T Consensus       101 y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~----~~l~-----------------------------~l  147 (249)
T 2qk1_A          101 YVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASS----GRNE-----------------------------DM  147 (249)
T ss_dssp             HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTT----CTTH-----------------------------HH
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccC----CcHH-----------------------------HH
Confidence            22335788899999999999999999998886411 10000    0011                             24


Q ss_pred             hHHHHHHHhhccHHHHHHHHHHHHhccCCCcc--ce--eeecCCcHHHHHHHHhhcchhhhhhHHHHHHHHhhhcC
Q 005282          436 LNHLLYLLRVADRAVKRRVTLALAHLCAPDDC--KT--IFIDNNGLELLLGLLESTSVKQREESSVALYKLATKAT  507 (704)
Q Consensus       436 ~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~--~~--~l~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~  507 (704)
                      ++.|+..+.++++.++..++.+|..+......  ..  ..+....++.|.+++.++++.+|..|..++..+++..+
T Consensus       148 l~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG  223 (249)
T 2qk1_A          148 LKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFG  223 (249)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC
Confidence            56788888889999999999999999543221  11  11114679999999999999999999999999987653

>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1

Probab=98.18  E-value=3.6e-06  Score=68.20  Aligned_cols=81  Identities=22%  Similarity=0.346  Sum_probs=62.7

Q ss_pred             cEEEEE-cCeEeehhHHHHhhcCHHHHHhhcC--CCCCCCCCceEcCCCCHHHHHHHHHHHhcCc-----------cccC
Q 005282          537 DVTFVV-EGKQFYAHRICLLASSDAFRAMFDG--GYKEKNAKDVEIPNIRWNVFELMMRFIYTGN-----------VDVS  602 (704)
Q Consensus       537 d~~~~~-~~~~~~~hk~iL~~~s~~f~~~f~~--~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~-----------~~~~  602 (704)
                      -|+++. +|..|.+++.+ +..|..++.|+.+  .+.|.....|++++++...++.+++|+|...           ..++
T Consensus        18 ~v~L~SsDG~~F~V~~~~-A~~S~tIk~ml~~~~~~~e~~~~~IplpnV~s~iL~kVieyc~~h~~~~~~~~~i~~w~vd   96 (112)
T 1vcb_B           18 YVKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIA   96 (112)
T ss_dssp             EEEEECTTSCEEEEEHHH-HHTSHHHHHHSSCC--------CEEECSSCCHHHHHHHHHHHHHHHHHSSCSSCCCCCCCC
T ss_pred             EEEEEcCCCCEEEECHHH-HHHhHHHHHHHHhcCCcccccCCceeCCCCCHHHHHHHHHHHHHhhhccCCcCCCCCcccC
Confidence            466664 78999999995 5699999999985  3446556789999999999999999997643           2467


Q ss_pred             hhhHHHHHHHHhhhCh
Q 005282          603 VDIAQDLLRAADQYLL  618 (704)
Q Consensus       603 ~~~~~~ll~~A~~~~~  618 (704)
                      .+.+++|+.+|+|+++
T Consensus        97 ~~~lfeLi~AAnyLdI  112 (112)
T 1vcb_B           97 PEIALELLMAANFLDC  112 (112)
T ss_dssp             HHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHhCc
Confidence            7899999999999874

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=97.97  E-value=0.0011  Score=77.07  Aligned_cols=413  Identities=10%  Similarity=0.035  Sum_probs=216.3

Q ss_pred             HHHHHHHhhhccCCchhhHHHHHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHH
Q 005282           47 IRAQIDILNSKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFAL  126 (704)
Q Consensus        47 ~~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L  126 (704)
                      ...+.+.|...++.+..   .+  |-..|..+...|         |....|++++.+.+.        +..+|..|+..|
T Consensus         4 ~~~l~~~L~~~~spd~~---~r--Ae~~L~~~~~~p---------~~~~~L~~il~~~~~--------~~~vR~~A~i~l   61 (960)
T 1wa5_C            4 LETVAKFLAESVIASTA---KT--SERNLRQLETQD---------GFGLTLLHVIASTNL--------PLSTRLAGALFF   61 (960)
T ss_dssp             HHHHHHHHHHTTSGGGH---HH--HHHHHHHHHTST---------THHHHHHHHHHCTTS--------CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCHH---HH--HHHHHHHhhcCC---------CHHHHHHHHHhcCCC--------CHHHHHHHHHHH
Confidence            34566666665543322   22  555555554333         446778888866544        468999999999


Q ss_pred             Hhhc-C-----------ChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCC
Q 005282          127 GLLA-V-----------KPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDG  194 (704)
Q Consensus       127 ~~l~-~-----------~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~  194 (704)
                      .|.. .           .++.+..+.     ..++..+.+...        .++..++.+++.++...-+ ..+   .+.
T Consensus        62 kn~i~~~w~~~~~~~~l~~~~k~~ik-----~~ll~~l~~~~~--------~ir~~l~~~ia~ia~~d~p-~~W---p~l  124 (960)
T 1wa5_C           62 KNFIKRKWVDENGNHLLPANNVELIK-----KEIVPLMISLPN--------NLQVQIGEAISSIADSDFP-DRW---PTL  124 (960)
T ss_dssp             HHHHHHHSBCSSSCBSSCHHHHHHHH-----HHHHHHHHHSCH--------HHHHHHHHHHHHHHHHHST-TTC---TTH
T ss_pred             HHHHHhcCCCcccCCCCCHHHHHHHH-----HHHHHHHHhCCH--------HHHHHHHHHHHHHHHhhCc-cch---hHH
Confidence            9987 2           112222222     234455544332        8899999999999853211 111   467


Q ss_pred             cHHHHHHhcCCCHHHHHHHHHHHHHhccCCc------hhhHHhH--hcCChHHHHH-------hhcCCCH---------H
Q 005282          195 IPPLVELLKFVDVKVQRAAAGALRTLAFKND------ENKKLIV--ECNALPTLVL-------MLRSEDA---------S  250 (704)
Q Consensus       195 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~------~~~~~~~--~~~~i~~L~~-------lL~~~~~---------~  250 (704)
                      ++.|++.++++++..+..++.++..++....      +.+..+.  -....+.++.       .+++...         .
T Consensus       125 l~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~  204 (960)
T 1wa5_C          125 LSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFD  204 (960)
T ss_dssp             HHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence            8889999988888889999999999986221      1111110  1112333333       2443321         2


Q ss_pred             HHHHHHHHHHHHhcC-ChhhHHHHHHcCCHHHHHHHhcCC------C---------hhHHHHHHHHHHHHhccCCcchHH
Q 005282          251 VHFEAVGVIGNLVHS-SPSIKKEVILAGALQPVIGLLSSS------C---------SESKREAALLLGQFAAADSNSKVH  314 (704)
Q Consensus       251 v~~~a~~~L~~l~~~-~~~~~~~~~~~~~l~~L~~ll~~~------~---------~~~~~~a~~~L~~l~~~~~~~~~~  314 (704)
                      +...++.+++++... .+....... ...++.+..++...      +         ..++..++.++..+.....+....
T Consensus       205 ~~~~~~k~~~~l~~~~~~~~~~~~~-~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~  283 (960)
T 1wa5_C          205 VLLVLIKLYYDFNCQDIPEFFEDNI-QVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGP  283 (960)
T ss_dssp             HHHHHHHHHHHHHSSCCCHHHHHTH-HHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             HHHHHHHHHHHHhhccchHHHHHHH-HHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334466677666532 122111000 12334555555321      1         134667777777776443332211


Q ss_pred             HHhcCChHHHHHhhC-----CCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHH-----Hhhc--------------
Q 005282          315 IVQRGAVRPLIEMLQ-----SPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLL-----KLLD--------------  370 (704)
Q Consensus       315 ~~~~~~i~~L~~ll~-----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~-----~ll~--------------  370 (704)
                      . -..+++..+..+.     ..+..++..++..+..++.....+..+...+.+..++     ..+.              
T Consensus       284 ~-~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~  362 (960)
T 1wa5_C          284 M-INEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPI  362 (960)
T ss_dssp             H-HHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHH
T ss_pred             H-HHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHH
Confidence            1 1234555555553     3456788889999988876543322211112222222     2221              


Q ss_pred             ---------CCChhHHHHHHHHHHHcccCCc--hhhHHHhhCCcccccc----cccccccchHHHHHHHHHHHHHh----
Q 005282          371 ---------SKNGSLQHNAAFALYGLADNED--NVADLVRVGGVQKLQD----GEFTVQPTKDCVARTLKRLEEKV----  431 (704)
Q Consensus       371 ---------~~~~~v~~~a~~~L~~l~~~~~--~~~~l~~~g~i~~l~~----~~~~~~~~~~~~~~~~~~~~~~~----  431 (704)
                               +.....|..|..+|..++..-.  ....+... ..+.+.+    ..... ..++.....+.......    
T Consensus       363 e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~~v~~~~l~~-i~~~l~~~~~~~~~~w-~~reaal~algaia~~~~~~~  440 (960)
T 1wa5_C          363 EYIRRDLEGSDTDTRRRACTDFLKELKEKNEVLVTNIFLAH-MKGFVDQYMSDPSKNW-KFKDLYIYLFTALAINGNITN  440 (960)
T ss_dssp             HHHHHHHHC----CHHHHHHHHHHHHHHHCHHHHHHHHHHH-HHHHHHHHHC----CH-HHHHHHHHHHHHHHBSSCCBT
T ss_pred             HHHHhccCcccccCcHHHHHHHHHHHHHHcchhHHHHHHHH-HHHHHHHhccCcchhH-HHHHHHHHHHHHHHHHhcccc
Confidence                     1112467788888888875322  11111110 0000000    00000 11122222222222110    


Q ss_pred             ---hc-----chhH----HHHHHHhhc---cHHHHHHHHHHHHhccCCCccceeeecCCcHHHHHHHHhhcchhhhhhHH
Q 005282          432 ---HG-----RVLN----HLLYLLRVA---DRAVKRRVTLALAHLCAPDDCKTIFIDNNGLELLLGLLESTSVKQREESS  496 (704)
Q Consensus       432 ---~~-----~~~~----~L~~ll~~~---~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~  496 (704)
                         ..     .+.+    .++..+.+.   ++.+|..|+|+|+.++..-. ...  -...++.+++.+.++++.|+..|+
T Consensus       441 ~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~-~~~--l~~~l~~l~~~L~d~~~~V~~~A~  517 (960)
T 1wa5_C          441 AGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT-KAQ--LIELMPILATFLQTDEYVVYTYAA  517 (960)
T ss_dssp             TBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC-HHH--HHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred             CCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC-HHH--HHHHHHHHHHHhCCCChhHHHHHH
Confidence               00     2222    344445666   89999999999999976431 111  124567777777778899999999


Q ss_pred             HHHHHHhhh
Q 005282          497 VALYKLATK  505 (704)
Q Consensus       497 ~~L~~L~~~  505 (704)
                      .+|.+++..
T Consensus       518 ~Al~~~~~~  526 (960)
T 1wa5_C          518 ITIEKILTI  526 (960)
T ss_dssp             HHHHHHTTC
T ss_pred             HHHHHHHhc
Confidence            999999874

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=97.91  E-value=0.00018  Score=69.42  Aligned_cols=177  Identities=17%  Similarity=0.137  Sum_probs=129.3

Q ss_pred             HHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHh-hcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHH
Q 005282           95 PALVEHLQTPPQLTNAQIPYEHEVEKECAFALGL-LAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAAD  173 (704)
Q Consensus        95 ~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~-l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~  173 (704)
                      ..+++-|.+.+.          ..+..++.-|.. +..++++...++..+|+..|+......+.        ..+.+++.
T Consensus       121 ~~iiekL~~~~~----------~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~g--------N~q~Y~L~  182 (339)
T 3dad_A          121 NAILEKLYSSSG----------PELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADH--------NYQSYILR  182 (339)
T ss_dssp             HHHHHHHHHCCH----------HHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCH--------HHHHHHHH
T ss_pred             HHHHHHHhcCCc----------HHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcCh--------HHHHHHHH
Confidence            344555555544          678899999999 44899999999999999999999988754        89999999


Q ss_pred             HHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhc----------CChHHHHHh
Q 005282          174 AITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVEC----------NALPTLVLM  243 (704)
Q Consensus       174 ~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~----------~~i~~L~~l  243 (704)
                      +|.++.......-..+.....|..+..++.+.+..+.+.|+..|..++..++.+...+.+.          .-++.|+.+
T Consensus       183 AL~~LM~~v~Gm~gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~  262 (339)
T 3dad_A          183 ALGQLMLFVDGMLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSI  262 (339)
T ss_dssp             HHHHHTTSHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHH
T ss_pred             HHHHHHhccccccchhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHH
Confidence            9999986433322333355678889999999999999999999999987666555544332          137889999


Q ss_pred             hc---CCCHHHHHHHHHHHHHHhcCChhh--HHH----HHHcCCHHHHHHHhcCC
Q 005282          244 LR---SEDASVHFEAVGVIGNLVHSSPSI--KKE----VILAGALQPVIGLLSSS  289 (704)
Q Consensus       244 L~---~~~~~v~~~a~~~L~~l~~~~~~~--~~~----~~~~~~l~~L~~ll~~~  289 (704)
                      |+   +.|.+++..+...|..+....+..  ...    +-..|.-..+...+...
T Consensus       263 L~~~~~~D~elq~~amtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~  317 (339)
T 3dad_A          263 LEEKNGADPELLVYTVTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTA  317 (339)
T ss_dssp             HTTTTSCCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCT
T ss_pred             HhccCCCCHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhcc
Confidence            97   789999999998887776543321  222    22334434555656544

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=97.84  E-value=0.00056  Score=66.03  Aligned_cols=183  Identities=16%  Similarity=0.127  Sum_probs=131.4

Q ss_pred             HHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCch
Q 005282          147 HLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDE  226 (704)
Q Consensus       147 ~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~  226 (704)
                      .++..|.+.+.        .-++.++.-|..+...+......++..+|+..|+......+...+..++.++.++-. ...
T Consensus       122 ~iiekL~~~~~--------~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~-~v~  192 (339)
T 3dad_A          122 AILEKLYSSSG--------PELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLML-FVD  192 (339)
T ss_dssp             HHHHHHHHCCH--------HHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTT-SHH
T ss_pred             HHHHHHhcCCc--------HHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHh-ccc
Confidence            44555665443        678888999998655677888889999999999999999999999999999999985 444


Q ss_pred             hhHHhH-hcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHc----------CCHHHHHHHhc---CCChh
Q 005282          227 NKKLIV-ECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILA----------GALQPVIGLLS---SSCSE  292 (704)
Q Consensus       227 ~~~~~~-~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~----------~~l~~L~~ll~---~~~~~  292 (704)
                      .-.-++ ....+..+..++.+.+..|.+.|+.+|..++..++.....+.++          .-+..++.+|.   +.+.+
T Consensus       193 Gm~gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~e  272 (339)
T 3dad_A          193 GMLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPE  272 (339)
T ss_dssp             HHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHH
T ss_pred             cccchhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHH
Confidence            443333 55678999999999999999999999999997765444333321          13788999997   67888


Q ss_pred             HHHHHHHHHHHHhccCCcc--hHH----HHhcCChHHHHHhhCCC--CHHHHHH
Q 005282          293 SKREAALLLGQFAAADSNS--KVH----IVQRGAVRPLIEMLQSP--DSQLKEM  338 (704)
Q Consensus       293 ~~~~a~~~L~~l~~~~~~~--~~~----~~~~~~i~~L~~ll~~~--~~~v~~~  338 (704)
                      ++..|...|-.+...-++.  ...    +-+.|+-..+.+.++..  ++++++.
T Consensus       273 lq~~amtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q  326 (339)
T 3dad_A          273 LLVYTVTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ  326 (339)
T ss_dssp             HHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence            8888887776665443322  122    22234445566656653  5555443

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=97.78  E-value=0.0031  Score=73.34  Aligned_cols=384  Identities=10%  Similarity=0.074  Sum_probs=198.9

Q ss_pred             HHHHHHHHHHHHHhhcC--hhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcC-Ch------hh
Q 005282           65 RAAAKTASHALVEFAKN--EEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAV-KP------EH  135 (704)
Q Consensus        65 ~~~~~~a~~~L~~l~~~--~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~-~~------~~  135 (704)
                      ..++.+.+.++..++..  |..     -.+.++.|++.+++++.          ..+..++.+|..++. ..      +.
T Consensus        99 ~~ir~~l~~~ia~ia~~d~p~~-----Wp~ll~~L~~~l~s~~~----------~~~~~aL~~l~~i~~~~~~~~~~~~~  163 (960)
T 1wa5_C           99 NNLQVQIGEAISSIADSDFPDR-----WPTLLSDLASRLSNDDM----------VTNKGVLTVAHSIFKRWRPLFRSDEL  163 (960)
T ss_dssp             HHHHHHHHHHHHHHHHHHSTTT-----CTTHHHHHHTTCCSSCT----------THHHHHHHHHHHHHGGGTTSCCCHHH
T ss_pred             HHHHHHHHHHHHHHHHhhCccc-----hhHHHHHHHHHhCCCCH----------HHHHHHHHHHHHHHHHHHHhhcChHH
Confidence            45667777777777652  211     24568999999987654          688889999999983 21      22


Q ss_pred             HHHHH--HcCCcHHHHHHHhhc----cCCCCC----cchhHHHHHHHHHHHHhhh-cChhhhhhhhccCCcHHHHHHhcC
Q 005282          136 QQIIV--DTGALPHLVSLLKQY----KNGGNS----RALSGVIRRAADAITNLAH-ENANIKTRVRVEDGIPPLVELLKF  204 (704)
Q Consensus       136 ~~~~~--~~g~l~~L~~lL~~~----~~~~~~----~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~~~~i~~L~~ll~~  204 (704)
                      +..+.  -....+.+++++...    ......    ....+++..++.+++++.. +.+..-.. .-...++.+..++..
T Consensus       164 ~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~-~~~~~~~~~~~~l~~  242 (960)
T 1wa5_C          164 FLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFED-NIQVGMGIFHKYLSY  242 (960)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH-THHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHH-HHHHHHHHHHHHHcC
Confidence            22111  112345555544321    110000    0001334446666666542 12211000 001223455555542


Q ss_pred             C------C---------HHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhc-----CCCHHHHHHHHHHHHHHhc
Q 005282          205 V------D---------VKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLR-----SEDASVHFEAVGVIGNLVH  264 (704)
Q Consensus       205 ~------~---------~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~-----~~~~~v~~~a~~~L~~l~~  264 (704)
                      .      +         ..++..++.++..+....++.-.. .-..+++..+..+.     ..++.++..++..+..++.
T Consensus       243 ~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~  321 (960)
T 1wa5_C          243 SNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGP-MINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTR  321 (960)
T ss_dssp             CSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHH-HHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHT
T ss_pred             CCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhC
Confidence            1      1         246778888888877533321111 11234555566554     3467889999999988875


Q ss_pred             CChhhHHHHHHcCCHHHHH-----HHhc-----------------------CCChhHHHHHHHHHHHHhccCCcchHHHH
Q 005282          265 SSPSIKKEVILAGALQPVI-----GLLS-----------------------SSCSESKREAALLLGQFAAADSNSKVHIV  316 (704)
Q Consensus       265 ~~~~~~~~~~~~~~l~~L~-----~ll~-----------------------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~  316 (704)
                      . +.....+...+.++.++     ..+.                       +.....+..|..+|..++...++   .+.
T Consensus       322 ~-~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~---~v~  397 (960)
T 1wa5_C          322 I-PKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEV---LVT  397 (960)
T ss_dssp             S-HHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHH---HHH
T ss_pred             c-HhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcch---hHH
Confidence            4 22111110012222222     2221                       00113466677777777754321   111


Q ss_pred             hcCChHHHHHhhC------CCCHHHHHHHHHHHHHhhcCCchhhhHHhh-----CChH----HHHHhhcCC---ChhHHH
Q 005282          317 QRGAVRPLIEMLQ------SPDSQLKEMSAFALGRLAQDTHNQAGIAQD-----GGIL----PLLKLLDSK---NGSLQH  378 (704)
Q Consensus       317 ~~~~i~~L~~ll~------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-----~~~~----~L~~ll~~~---~~~v~~  378 (704)
                       ..+++.+...+.      +.+...++.|..+++.++.+......-...     ...+    .++..+.+.   ++-+|.
T Consensus       398 -~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~  476 (960)
T 1wa5_C          398 -NIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRV  476 (960)
T ss_dssp             -HHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHH
T ss_pred             -HHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehH
Confidence             113344444444      456788999999999998642211100000     1111    233334555   889999


Q ss_pred             HHHHHHHHcccCCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHHHHHHH
Q 005282          379 NAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLAL  458 (704)
Q Consensus       379 ~a~~~L~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L  458 (704)
                      .++++++.++..-.  ...                                  ...+++.++..+.+.++.|+..|+++|
T Consensus       477 ~a~~~lg~~~~~~~--~~~----------------------------------l~~~l~~l~~~L~d~~~~V~~~A~~Al  520 (960)
T 1wa5_C          477 DAIKYIYTFRNQLT--KAQ----------------------------------LIELMPILATFLQTDEYVVYTYAAITI  520 (960)
T ss_dssp             HHHHHHHHTGGGSC--HHH----------------------------------HHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhCC--HHH----------------------------------HHHHHHHHHHHhCCCChhHHHHHHHHH
Confidence            99999999975210  000                                  112556677777788899999999999


Q ss_pred             HhccCCCc---------cceeeec--CCcHHHHHHHHhhcc---h--hhhhhHHHHHHHHhhhc
Q 005282          459 AHLCAPDD---------CKTIFID--NNGLELLLGLLESTS---V--KQREESSVALYKLATKA  506 (704)
Q Consensus       459 ~~l~~~~~---------~~~~l~~--~~~i~~L~~ll~~~~---~--~~~~~a~~~L~~L~~~~  506 (704)
                      .+++....         .+..+..  ...++.|..++....   +  .....+..+|..++...
T Consensus       521 ~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~  584 (960)
T 1wa5_C          521 EKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTS  584 (960)
T ss_dssp             HHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHH
T ss_pred             HHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHH
Confidence            99976321         1222211  134555666665531   1  13456677777765544

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=97.67  E-value=0.00031  Score=79.12  Aligned_cols=294  Identities=13%  Similarity=0.078  Sum_probs=180.7

Q ss_pred             HHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCh---hhHHHHHH
Q 005282          199 VELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSP---SIKKEVIL  275 (704)
Q Consensus       199 ~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~---~~~~~~~~  275 (704)
                      ++-+...+..-+..+...+..+..+....  .....+++..+.+.+.+....  +.|+.++..++....   .....+  
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~--   93 (986)
T 2iw3_A           20 FQKLSVATADNRHEIASEVASFLNGNIIE--HDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYI--   93 (986)
T ss_dssp             HHHHTTCCTTTHHHHHHHHHHHHTSSCSS--SSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHH--
T ss_pred             HhhccccchhHHHHHHHHHHHHHhccccc--cccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccch--
Confidence            33344333344456667777776432111  111235677777777665444  999999999995432   222222  


Q ss_pred             cCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCC-CHHHHHHHHHHHHHhhcCCchhh
Q 005282          276 AGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSP-DSQLKEMSAFALGRLAQDTHNQA  354 (704)
Q Consensus       276 ~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~  354 (704)
                      .+.++.++....+....++..|..++..+...-+....    ..+++.|+..+.+. ....+..|+.++..++.....+.
T Consensus        94 ~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~  169 (986)
T 2iw3_A           94 VQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQV  169 (986)
T ss_dssp             HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHH
T ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHH
Confidence            26789999999888888988888777777654444332    33689999998754 68899999999999997654444


Q ss_pred             hHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcccCCchhhHHHhhCCcccccccccccccchHHHHHHH-----HHHHH
Q 005282          355 GIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTL-----KRLEE  429 (704)
Q Consensus       355 ~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~-----~~~~~  429 (704)
                      ...-...+|.+-..+.+..++|...|..++..++..-.|...   ...++.|++....-....+|+-..-     +..+.
T Consensus       170 ~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~---~~~~~~~~~~~~~p~~~~~~~~~l~~~tfv~~v~~  246 (986)
T 2iw3_A          170 ALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI---ERFIPSLIQCIADPTEVPETVHLLGATTFVAEVTP  246 (986)
T ss_dssp             HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT---GGGHHHHHHHHHCTTHHHHHHHHHTTCCCCSCCCH
T ss_pred             HHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch---hhhHHHHHHHhcChhhhHHHHHHhhcCeeEeeecc
Confidence            444456788888999999999999999999988862222110   0111222211111111111111100     00000


Q ss_pred             HhhcchhHHHHHHHhhccHHHHHHHHHHHHhccC---CCccceeeecCCcHHHHHHHHhh-cchhhhhhHHHHHHHHhhh
Q 005282          430 KVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCA---PDDCKTIFIDNNGLELLLGLLES-TSVKQREESSVALYKLATK  505 (704)
Q Consensus       430 ~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~---~~~~~~~l~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~L~~~  505 (704)
                      -..+-++|.|..-|......+++.++.++-|+|.   ++.....|+ ..-+|.|.+.... ++|++|..|..++..|.+-
T Consensus       247 ~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~-~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~  325 (986)
T 2iw3_A          247 ATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFL-GKLLPGLKSNFATIADPEAREVTLRALKTLRRV  325 (986)
T ss_dssp             HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHH-TTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhh-hhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHh
Confidence            0012244555556666789999999999999976   222222222 2456666666654 8999999999999988654


Q ss_pred             c
Q 005282          506 A  506 (704)
Q Consensus       506 ~  506 (704)
                      .
T Consensus       326 ~  326 (986)
T 2iw3_A          326 G  326 (986)
T ss_dssp             H
T ss_pred             h
Confidence            4

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=97.40  E-value=0.032  Score=63.00  Aligned_cols=246  Identities=17%  Similarity=0.211  Sum_probs=165.4

Q ss_pred             HHHHHHHHHhhcC----hhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc--CChhhHHHHHHc
Q 005282           69 KTASHALVEFAKN----EEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA--VKPEHQQIIVDT  142 (704)
Q Consensus        69 ~~a~~~L~~l~~~----~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~--~~~~~~~~~~~~  142 (704)
                      ..|+.++..++..    +..--.++  +.++.++..+.+...          .|+..|..++..+.  -+|+...     
T Consensus        70 ~~a~~~~~~~~~~~~~~~~~e~~~~--~~~~~~~~~~~dk~~----------~v~~aa~~~~~~~~~~~~~~a~~-----  132 (986)
T 2iw3_A           70 ANAMQAVAHIANQSNLSPSVEPYIV--QLVPAICTNAGNKDK----------EIQSVASETLISIVNAVNPVAIK-----  132 (986)
T ss_dssp             HHHHHHHHHHTCTTTCCTTTHHHHH--TTHHHHHHHTTCSSH----------HHHHHHHHHHHHHHHHSCGGGHH-----
T ss_pred             HHHHHHHHHHHHhcCCCCCcccchH--HHHHHHHHHhcCCch----------HHHHHHHHHHHHHHHhCCHHHHH-----
Confidence            5566666666631    23322222  578999999888765          89999998998888  4555442     


Q ss_pred             CCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhcc
Q 005282          143 GALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAF  222 (704)
Q Consensus       143 g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~  222 (704)
                      .++|.|+..|.+...       |..+..|+.++..++...+. .-...-...+|.+...+-+..+++...|..++..+|.
T Consensus       133 ~~~~~~~~~~~~~~k-------w~~k~~~l~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~  204 (986)
T 2iw3_A          133 ALLPHLTNAIVETNK-------WQEKIAILAAFSAMVDAAKD-QVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATE  204 (986)
T ss_dssp             HHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHSHH-HHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHhccccc-------hHHHHHHHHHHHHHHHHhHH-HHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHh
Confidence            346899999976543       89999999999999975543 3334446778888898989999999999999999985


Q ss_pred             CCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHH
Q 005282          223 KNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLG  302 (704)
Q Consensus       223 ~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~  302 (704)
                       .-.|+..   ...+|.|++.+.+++.  ...++..|+.-+...+.....+  +=.+|.|..-|......+.+.++.++.
T Consensus       205 -~~~n~d~---~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~v~~~~l--~~~~p~l~r~l~~~~~~~~r~~~~~~~  276 (986)
T 2iw3_A          205 -TVDNKDI---ERFIPSLIQCIADPTE--VPETVHLLGATTFVAEVTPATL--SIMVPLLSRGLNERETGIKRKSAVIID  276 (986)
T ss_dssp             -GCCCTTT---GGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSCCCHHHH--HHHHHHHHHHHTSSSHHHHHHHHHHHH
T ss_pred             -cCCCcch---hhhHHHHHHHhcChhh--hHHHHHHhhcCeeEeeecchhH--HHHHHHHHhhhccCcchhheeeEEEEc
Confidence             2222221   2358999999987744  3444444444333221111111  113566677777888889999999999


Q ss_pred             HHhccCCcc-hHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhh
Q 005282          303 QFAAADSNS-KVHIVQRGAVRPLIEMLQS-PDSQLKEMSAFALGRLA  347 (704)
Q Consensus       303 ~l~~~~~~~-~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~  347 (704)
                      |+|.--++- ...-.-..++|.+-+.... .+|++|+.+..++..|.
T Consensus       277 n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~  323 (986)
T 2iw3_A          277 NMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLR  323 (986)
T ss_dssp             HHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHH
T ss_pred             chhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHH
Confidence            998532221 1122224567777776654 78999998888888774

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=97.26  E-value=0.016  Score=67.64  Aligned_cols=386  Identities=9%  Similarity=0.015  Sum_probs=190.5

Q ss_pred             HHHHHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCC-----hh-h---
Q 005282           65 RAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVK-----PE-H---  135 (704)
Q Consensus        65 ~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~-----~~-~---  135 (704)
                      ..++.+.+.++..++....-    .-.+.++.++..++++..+    .-.++.....++.+|..++..     +. -   
T Consensus        99 ~~vr~kl~~~la~i~~~~~p----~Wp~~l~~l~~~~~~~~~~----~~~~~~~~~~~l~iL~~l~EEi~~~~~~~~r~~  170 (971)
T 2x1g_F           99 KIVLNRLCISLGAYIVHMLG----EWPGAIEEVINTFQNQRMP----NVSADVQLWIMLEVLTAIPEEAQVIHTSVKRVV  170 (971)
T ss_dssp             HHHHHHHHHHHHHHHHHTTC----C------HHHHHHHHTC--------CHHHHHHHHHHHHHHHHHHHHHCCCSSCHHH
T ss_pred             HHHHHHHHHHHHHHHHHccc----cccHHHHHHHHHHhccccc----cCCCHHHHHHHHHHHHHhHHHHhccCcHHHHHH
Confidence            44566666666666552110    1235678888888764110    000125777888888877621     11 1   


Q ss_pred             -HHHHHHcCCcHHHHHHH----hhccCCCCCcchhHHHHHHHHHHHHhhh--cChhhhhhhhccCCcHHHHHHhc-----
Q 005282          136 -QQIIVDTGALPHLVSLL----KQYKNGGNSRALSGVIRRAADAITNLAH--ENANIKTRVRVEDGIPPLVELLK-----  203 (704)
Q Consensus       136 -~~~~~~~g~l~~L~~lL----~~~~~~~~~~~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~~~~i~~L~~ll~-----  203 (704)
                       ++.+.  ..++.++.++    ............+.++..++.++.....  .-+..    .....++.+.. +.     
T Consensus       171 ~~~~l~--~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~----~~~~ll~~l~~-L~~~~~~  243 (971)
T 2x1g_F          171 LRAEIA--KRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIE----GCVTITAVLLE-VVHKCYW  243 (971)
T ss_dssp             HHHHHH--TTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGG----GHHHHHHHHHH-HHHHHHS
T ss_pred             HHHHHH--HHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCcc----ccccHHHHHHh-hhhhhcc
Confidence             11222  2344444444    4332211111123678888888877554  22221    22344555555 31     


Q ss_pred             -----------CCCHHHHHHHHHHHHHhccCCch-hhHHhHhcCChHHHHHh-------hcCCC---HHHHHHHHHHHHH
Q 005282          204 -----------FVDVKVQRAAAGALRTLAFKNDE-NKKLIVECNALPTLVLM-------LRSED---ASVHFEAVGVIGN  261 (704)
Q Consensus       204 -----------~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~~i~~L~~l-------L~~~~---~~v~~~a~~~L~~  261 (704)
                                 .++++++..|+.++..+....+. ....... ..++.++.+       +.+.+   .......++.+..
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~  322 (971)
T 2x1g_F          244 PCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAF-VLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVS  322 (971)
T ss_dssp             SSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHH-HHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHH
T ss_pred             ccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHHH-HHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHH
Confidence                       14678999999999999863221 1111111 123333332       23344   3777777888777


Q ss_pred             HhcCChhhHH-H---------HHHcCCHHHHHHHhcC-----CChhHHHHHHHHHHHHhccC--------CcchHHHHh-
Q 005282          262 LVHSSPSIKK-E---------VILAGALQPVIGLLSS-----SCSESKREAALLLGQFAAAD--------SNSKVHIVQ-  317 (704)
Q Consensus       262 l~~~~~~~~~-~---------~~~~~~l~~L~~ll~~-----~~~~~~~~a~~~L~~l~~~~--------~~~~~~~~~-  317 (704)
                      +......... .         -.-...++.++.+...     .+.++...++..+..++...        ......... 
T Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~  402 (971)
T 2x1g_F          323 SVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKP  402 (971)
T ss_dssp             HHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence            7643322111 0         0001344555555433     46778888888877775411        111111111 


Q ss_pred             --cCChHHHHHhhCCCC---------------HHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcC-----CChh
Q 005282          318 --RGAVRPLIEMLQSPD---------------SQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDS-----KNGS  375 (704)
Q Consensus       318 --~~~i~~L~~ll~~~~---------------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~-----~~~~  375 (704)
                        ..+++.++..+..++               ...|..+..+|..++..-...  +. ...++.+-..+.+     .+..
T Consensus       403 ~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~~--~l-~~~~~~l~~~l~~~~~~~~~w~  479 (971)
T 2x1g_F          403 LYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLNDY--IL-EILAAMLDEAIADLQRHPTHWT  479 (971)
T ss_dssp             HHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCTTH--HH-HHHHHHHHHHHHHHHHCTTCCH
T ss_pred             HHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHhHH--HH-HHHHHHHHHHHHhccCCCCcHH
Confidence              134455555553221               135666777777776543211  11 0111222223322     5677


Q ss_pred             HHHHHHHHHHHcccCCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHH-hhccHHHHHHH
Q 005282          376 LQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLL-RVADRAVKRRV  454 (704)
Q Consensus       376 v~~~a~~~L~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll-~~~~~~v~~~a  454 (704)
                      .++.++.+++.++.......    ...++                             .+++.+..+. .+.++.++..+
T Consensus       480 ~~eaal~~l~~iae~~~~~~----~~~l~-----------------------------~l~~~l~~l~~~d~~~~vr~~a  526 (971)
T 2x1g_F          480 KLEACIYSFQSVAEHFGGEE----KRQIP-----------------------------RLMRVLAEIPYEKLNVKLLGTA  526 (971)
T ss_dssp             HHHHHHHHHHHTTTC----------CHHH-----------------------------HHHHHHHHSCTTTSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcChhh----hHHHH-----------------------------HHHHHHHhcCccccCHHHHHHH
Confidence            88999999999975322100    00000                             0222111221 13478999999


Q ss_pred             HHHHHhccCCCccceeeecCCcHHHHHHHHhhcchhhhhhHHHHHHHHhhhc
Q 005282          455 TLALAHLCAPDDCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLATKA  506 (704)
Q Consensus       455 ~~~L~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~  506 (704)
                      +++++.++..-....... ...++.|+..+ +  +.++..|+.++.++++..
T Consensus       527 ~~~l~~~~~~l~~~~~~l-~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~  574 (971)
T 2x1g_F          527 LETMGSYCNWLMENPAYI-PPAINLLVRGL-N--SSMSAQATLGLKELCRDC  574 (971)
T ss_dssp             HHHHHHTHHHHC----CH-HHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhcCHHHH-HHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHH
Confidence            999999964211111111 24566666666 2  889999999999999765

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=97.01  E-value=0.32  Score=56.42  Aligned_cols=334  Identities=12%  Similarity=0.083  Sum_probs=174.5

Q ss_pred             chHHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCC
Q 005282          115 EHEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDG  194 (704)
Q Consensus       115 d~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~  194 (704)
                      +...++.++++++.++......    ....++.++..+..-..+     .+.++..++++++.++..-....  -.-...
T Consensus       462 ~w~~~eaal~al~~i~~~~~~~----~~~~l~~l~~~l~~l~~~-----~~~vr~~~~~~l~~~~~~l~~~~--~~l~~v  530 (963)
T 2x19_B          462 SWQHTEALLYGFQSIAETIDVN----YSDVVPGLIGLIPRISIS-----NVQLADTVMFTIGALSEWLADHP--VMINSV  530 (963)
T ss_dssp             CHHHHHHHHHHHHHHTTSCCSS----CCSHHHHHHHHGGGSCCC-----SHHHHHHHHHHHHHTHHHHHHCH--HHHTTT
T ss_pred             chHHHHHHHHHHHHHHhhcCch----hhHHHHHHHHHHHhCCCC-----cHHHHHHHHHHHHHHHHHHHhCH--HHHHHH
Confidence            4578999999999999322110    012344555554332211     23799999999999985322111  223577


Q ss_pred             cHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhH--hcCChHHHHHhhcC--CCHHHHHHHHHHHHHHhcCCh-hh
Q 005282          195 IPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIV--ECNALPTLVLMLRS--EDASVHFEAVGVIGNLVHSSP-SI  269 (704)
Q Consensus       195 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~--~~~~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~-~~  269 (704)
                      ++.++..+.+  +.++..|+.++.+++....   ..+.  -..++..+..++..  .+...+..+..+++.++...+ +.
T Consensus       531 l~~l~~~l~~--~~V~~~A~~al~~l~~~~~---~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~  605 (963)
T 2x19_B          531 LPLVLHALGN--PELSVSSVSTLKKICRECK---YDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEE  605 (963)
T ss_dssp             HHHHHHHTTC--GGGHHHHHHHHHHHHHHTG---GGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHH
T ss_pred             HHHHHHHhCC--chHHHHHHHHHHHHHHHHH---HHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHH
Confidence            8888888854  7899999999999995322   2221  11234444555554  357889999999999886443 22


Q ss_pred             HHHHHHcCCHHHHHHHh----cCC-ChhHHH---HHHHHHHHHhccCCc---------------------chHHHHhcCC
Q 005282          270 KKEVILAGALQPVIGLL----SSS-CSESKR---EAALLLGQFAAADSN---------------------SKVHIVQRGA  320 (704)
Q Consensus       270 ~~~~~~~~~l~~L~~ll----~~~-~~~~~~---~a~~~L~~l~~~~~~---------------------~~~~~~~~~~  320 (704)
                      ..... ..+++.+...+    ... +++.+.   ....+|+.+...-..                     .........+
T Consensus       606 ~~~~~-~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  684 (963)
T 2x19_B          606 ILKNL-HSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQV  684 (963)
T ss_dssp             HHHHH-HHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHH
T ss_pred             HHHHH-HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHH
Confidence            22221 23344444333    222 344333   333344433321110                     0011122345


Q ss_pred             hHHHHHhhC--CCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhh----cC-CChhHHHHHHHHHHHccc----
Q 005282          321 VRPLIEMLQ--SPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLL----DS-KNGSLQHNAAFALYGLAD----  389 (704)
Q Consensus       321 i~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll----~~-~~~~v~~~a~~~L~~l~~----  389 (704)
                      ++.+..++.  ..+..+.+.++.++..++..-....    ...++.++..+    .. ..+.+    +.++..+..    
T Consensus       685 ~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~----~~~l~~~~~~l~~~~~~~~~~~~----l~l~~~li~~f~~  756 (963)
T 2x19_B          685 FQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDF----APMVPQLCEMLGRMYSTIPQASA----LDLTRQLVHIFAH  756 (963)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTT----GGGHHHHHHHHHHHHHHSCCHHH----HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhccCchHHHHHHHHHHHHHHHhhcccc----cccHHHHHHHHHHHHHcCCccHH----HHHHHHHHHHhCC
Confidence            566666654  3567888999999988764221110    11234433332    21 22222    222332211    


Q ss_pred             CCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhh---ccHHHHHHHHHHHHhccCCCc
Q 005282          390 NEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRV---ADRAVKRRVTLALAHLCAPDD  466 (704)
Q Consensus       390 ~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~---~~~~v~~~a~~~L~~l~~~~~  466 (704)
                      .+.....+                       ...+        ..++..++.++..   .+++++......+..+.....
T Consensus       757 ~~~~~~~~-----------------------~~~l--------~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~  805 (963)
T 2x19_B          757 EPAHFPPI-----------------------EALF--------LLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKP  805 (963)
T ss_dssp             CTTTCHHH-----------------------HHHH--------HHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCG
T ss_pred             CcchHHHH-----------------------HHHH--------HHHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCc
Confidence            11000000                       0000        0123333444432   358888888888887743211


Q ss_pred             cceeeecCC-----cHHHHHHHHhhcchhhhhhHHHHHHHHhhhc
Q 005282          467 CKTIFIDNN-----GLELLLGLLESTSVKQREESSVALYKLATKA  506 (704)
Q Consensus       467 ~~~~l~~~~-----~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~  506 (704)
                      ..  +....     .++.++..+...++.+...+...+..+....
T Consensus       806 ~~--~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~~  848 (963)
T 2x19_B          806 DL--FLCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPRC  848 (963)
T ss_dssp             GG--GGCTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGGGT
T ss_pred             HH--HcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcC
Confidence            11  11122     3444555666788888899999999988754

>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A

Probab=96.99  E-value=0.00098  Score=59.36  Aligned_cols=96  Identities=17%  Similarity=0.250  Sum_probs=75.4

Q ss_pred             cccEEEEEcCeEeehhHHHHhhcC-HHHHHhhcCCCC----CCCCCceEcCCCCHHHHHHHHHHHhcCccccChhh-HHH
Q 005282          535 LSDVTFVVEGKQFYAHRICLLASS-DAFRAMFDGGYK----EKNAKDVEIPNIRWNVFELMMRFIYTGNVDVSVDI-AQD  608 (704)
Q Consensus       535 ~~d~~~~~~~~~~~~hk~iL~~~s-~~f~~~f~~~~~----e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~-~~~  608 (704)
                      -.-|.+-|||..|...+..|.... .+|.+||.+...    ......+-+ |-++..|..+|.|+-+|.+.++.+. ...
T Consensus        11 ~~~V~LNVGG~~F~Tt~sTL~r~PdS~L~~lfs~~~~~~~~~De~geyFI-DRDP~~F~~ILnyLRtG~L~lP~~~~~~~   89 (202)
T 3drx_A           11 SKWVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLI-DRDPTYFGPVLNYLRHGKLVINKDLAEEG   89 (202)
T ss_dssp             CCEEEEEETTEEEEEETTGGGSCTTSSTHHHHSCCCC----BCTTCCEEE-CSCSTTHHHHHHHHHHSCCCCCTTSCHHH
T ss_pred             CCEEEEEECCEEEEEeHHHHhCCCcchHHHHhcCccccCcccCCCccEEe-cCChHHHHHHHHHhcCCccCCCCCCCHHH
Confidence            345778899999999999998654 488899876421    112334544 5689999999999999999876553 478


Q ss_pred             HHHHHhhhChHhHHHHHHHHHHh
Q 005282          609 LLRAADQYLLEGLKRLCEYSIAQ  631 (704)
Q Consensus       609 ll~~A~~~~~~~l~~~c~~~l~~  631 (704)
                      +++-|++|+++.|.+.|.+.|.+
T Consensus        90 l~eEA~FygL~~Lv~~l~~~i~e  112 (202)
T 3drx_A           90 VLEEAEFYNITSLIKLVKDKIRE  112 (202)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCcHHHHHHHHHHHHH
Confidence            99999999999999999988853

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=96.98  E-value=0.028  Score=54.54  Aligned_cols=188  Identities=13%  Similarity=0.093  Sum_probs=125.6

Q ss_pred             cHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhh--HH-hH-hcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh--
Q 005282          195 IPPLVELLKFVDVKVQRAAAGALRTLAFKNDENK--KL-IV-ECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPS--  268 (704)
Q Consensus       195 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~--~~-~~-~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~--  268 (704)
                      +| +-+-|.+.++..|..|+..+..+....+...  .. +. -....+.+-..+.+.+..++..++.++..++.....  
T Consensus        12 lp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~   90 (278)
T 4ffb_C           12 LP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSS   90 (278)
T ss_dssp             CC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---
T ss_pred             CC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhh
Confidence            44 6678889999999999999998875332211  11 11 123466777888899999999999999988753211  


Q ss_pred             ---hHHHHHHcCCHHHHHHH-hcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHH
Q 005282          269 ---IKKEVILAGALQPVIGL-LSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALG  344 (704)
Q Consensus       269 ---~~~~~~~~~~l~~L~~l-l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~  344 (704)
                         ......-..+++.|+.- +.+....++..+..++..++...... .     .+++.+...+.+.++.++..++..|.
T Consensus        91 ~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-~-----~~~e~l~~~l~~Knpkv~~~~l~~l~  164 (278)
T 4ffb_C           91 LKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-T-----QSVELVIPFFEKKLPKLIAAAANCVY  164 (278)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-H-----HHHHHHGGGGGCSCHHHHHHHHHHHH
T ss_pred             cccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-H-----HHHHHHHHHHhccCHHHHHHHHHHHH
Confidence               11111223456777754 77778888888888887776432221 1     13567778888999999999999998


Q ss_pred             HhhcC--Cchh-hhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHccc
Q 005282          345 RLAQD--THNQ-AGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLAD  389 (704)
Q Consensus       345 ~l~~~--~~~~-~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~  389 (704)
                      .+...  .... ....-...++.+..++.+.+++||..|..++..+-.
T Consensus       165 ~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~  212 (278)
T 4ffb_C          165 ELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYK  212 (278)
T ss_dssp             HHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence            87643  2111 111112344567788899999999999999988753

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=96.92  E-value=0.013  Score=53.91  Aligned_cols=176  Identities=14%  Similarity=0.149  Sum_probs=127.9

Q ss_pred             HHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc--CChhhHHHHHHcCCc
Q 005282           68 AKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA--VKPEHQQIIVDTGAL  145 (704)
Q Consensus        68 ~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~--~~~~~~~~~~~~g~l  145 (704)
                      ...|+..|..++.+|+.+..++++++.-.|..+|...+.    ..+| +.+|..+.++++.+.  ++++....+.+.+.+
T Consensus        73 VcnaLaLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk----~r~f-E~LRLtsLGVIgaLvK~dd~eVi~fLL~tEii  147 (268)
T 2fv2_A           73 VCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSK----TRPF-EYLRLTSLGVIGALVKTDEQEVINFLLTTEII  147 (268)
T ss_dssp             HHHHHHHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCC----SHHH-HHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHH
T ss_pred             HHHHHHHHHHHHcCcchhhHHHHccchHHhhhhhccccC----CCcc-hhhhhhHHHHHHHHhccCcHHHHHHHHhhhHH
Confidence            355666677778899999999999999999999988765    2222 368999999999999  788888899999999


Q ss_pred             HHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhc--------cCCcHHHH-HHhcCCCHHHHHHHHHH
Q 005282          146 PHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRV--------EDGIPPLV-ELLKFVDVKVQRAAAGA  216 (704)
Q Consensus       146 ~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--------~~~i~~L~-~ll~~~~~~~~~~a~~~  216 (704)
                      |..++.+...+.        -.+..|..++..+..++... ..+..        ..++..++ .+.+.+++.+.++.+++
T Consensus       148 plCLrime~Gse--------lSKtvAtfIlqKIL~dd~GL-~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiirc  218 (268)
T 2fv2_A          148 PLCLRIMESGSE--------LSKTVATFILQKILLDDTGL-AYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRC  218 (268)
T ss_dssp             HHHHHHHHHSCH--------HHHHHHHHHHHHHHHSHHHH-HHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHH
T ss_pred             HHHHHHHhhccH--------HHHHHHHHHHHHHhccchhH-HHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHH
Confidence            999999999875        56677777777776533222 21111        11222222 34457899999999999


Q ss_pred             HHHhccCCchhhHHhHhc-------CChHHHHHhhcCCCHHHHHHHHHHHHHH
Q 005282          217 LRTLAFKNDENKKLIVEC-------NALPTLVLMLRSEDASVHFEAVGVIGNL  262 (704)
Q Consensus       217 L~~l~~~~~~~~~~~~~~-------~~i~~L~~lL~~~~~~v~~~a~~~L~~l  262 (704)
                      -..|+. ++..++.+...       |.+.   .++ .+|+.++++-...+.|+
T Consensus       219 YlRLsd-n~rar~aL~~~LP~~Lrd~tf~---~~l-~~D~~~k~~l~qLl~n~  266 (268)
T 2fv2_A          219 YLRLSD-NPRAREALRQCLPDQLKDTTFA---QVL-KDDTTTKRWLAQLVKNL  266 (268)
T ss_dssp             HHHHTT-SHHHHHHHHHHSCGGGTSSTTH---HHH-TSCHHHHHHHHHHHHHS
T ss_pred             HHHHhc-CHHHHHHHHHhCcHHhhChHHH---HHH-hcCHHHHHHHHHHHHhc
Confidence            999995 88877776542       2222   222 35788888888777776

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=96.90  E-value=0.043  Score=64.38  Aligned_cols=184  Identities=14%  Similarity=0.127  Sum_probs=102.1

Q ss_pred             HHHHhhhccCCchhhHHHHHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhh
Q 005282           50 QIDILNSKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLL  129 (704)
Q Consensus        50 l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l  129 (704)
                      +...|..+.+.+.+   .+.+|-..|.++..+|         ++...+..+|....         +..+|..|+..|.+.
T Consensus        18 l~~~l~~~~~p~~~---~r~~Ae~~L~~~~~~p---------~~~~~l~~iL~~s~---------~~~vr~~aa~~Lk~~   76 (1049)
T 3m1i_C           18 LDQVVSTFYQGSGV---QQKQAQEILTKFQDNP---------DAWQKADQILQFST---------NPQSKFIALSILDKL   76 (1049)
T ss_dssp             HHHHHHHHHHCCHH---HHHHHHHHHHHHHHST---------TGGGGHHHHHHHCS---------CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCChH---HHHHHHHHHHHHHhCc---------hHHHHHHHHHhhCC---------CHHHHHHHHHHHHHH
Confidence            44444444443322   4666777776665444         34666777775543         358999999999998


Q ss_pred             c-C-----ChhhHHHHHHcCCcHHHHHHHhhccCCCC-CcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHh
Q 005282          130 A-V-----KPEHQQIIVDTGALPHLVSLLKQYKNGGN-SRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELL  202 (704)
Q Consensus       130 ~-~-----~~~~~~~~~~~g~l~~L~~lL~~~~~~~~-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll  202 (704)
                      . .     .++.+..+.     ..++..+.+....+. ......++...+.+++.++...-. ..+   .+.++.|+..+
T Consensus        77 i~~~W~~l~~~~~~~ir-----~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p-~~W---p~ll~~L~~~~  147 (1049)
T 3m1i_C           77 ITRKWKLLPNDHRIGIR-----NFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWP-QNW---PEFIPELIGSS  147 (1049)
T ss_dssp             HHHTGGGSCHHHHHHHH-----HHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTT-TTC---TTHHHHHHHHH
T ss_pred             HHhhCccCCHHHHHHHH-----HHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCc-ccc---hHHHHHHHHHH
Confidence            7 2     223333333     334444443221000 000026788888888888853211 111   45678888888


Q ss_pred             cCCCHHHHHHHHHHHHHhccCCc--------hhh-----HHhHhc--CChHHHHHhhc-CCCHHHHHHHHHHHHHHhc
Q 005282          203 KFVDVKVQRAAAGALRTLAFKND--------ENK-----KLIVEC--NALPTLVLMLR-SEDASVHFEAVGVIGNLVH  264 (704)
Q Consensus       203 ~~~~~~~~~~a~~~L~~l~~~~~--------~~~-----~~~~~~--~~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~  264 (704)
                      + .++..+..++.+|..++....        ..+     ..+...  .+++.+...+. ..++.++..++.++.+...
T Consensus       148 ~-~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~  224 (1049)
T 3m1i_C          148 S-SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLH  224 (1049)
T ss_dssp             T-TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT
T ss_pred             c-cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence            6 566667777888877763111        001     112221  12333444454 3467889999999987654

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=96.87  E-value=0.071  Score=61.46  Aligned_cols=303  Identities=13%  Similarity=0.099  Sum_probs=161.5

Q ss_pred             HHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCc--hhhHHhHhcCChHHHHHh
Q 005282          166 GVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKND--ENKKLIVECNALPTLVLM  243 (704)
Q Consensus       166 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~--~~~~~~~~~~~i~~L~~l  243 (704)
                      .++..++.++......-+  -..+...+.++.+..++..  ++++..|+.+|..+.....  +.+..++..=.+...+..
T Consensus       208 ~l~~~~L~~l~s~i~wi~--~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~  283 (980)
T 3ibv_A          208 GTVGLCLQVYAQWVSWIN--INLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSK  283 (980)
T ss_dssp             HHHHHHHHHHHHHTTTSC--HHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHhhcC--HHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHH
Confidence            788899999999886433  2345567778888888875  7999999999999976332  222222222001111222


Q ss_pred             hc--CCCHHHHHHHHHHHHHHhc------CCh-----hhHHHH--HHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcc-
Q 005282          244 LR--SEDASVHFEAVGVIGNLVH------SSP-----SIKKEV--ILAGALQPVIGLLSSSCSESKREAALLLGQFAAA-  307 (704)
Q Consensus       244 L~--~~~~~v~~~a~~~L~~l~~------~~~-----~~~~~~--~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~-  307 (704)
                      +.  ..|.++.+..++.+..+..      ..+     +.....  .-.+.++.++.++.+++.++...+...+..+... 
T Consensus       284 l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~  363 (980)
T 3ibv_A          284 SQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSL  363 (980)
T ss_dssp             -----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHH
T ss_pred             HhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHH
Confidence            22  4677776655555544432      111     111111  1136888888999888888877666665554421 


Q ss_pred             ---CC--cchHHH--HhcCChHHHHHhhCCC------C----------HHHHHHHHHHHHHhhcC-C-chhhhHHhhCCh
Q 005282          308 ---DS--NSKVHI--VQRGAVRPLIEMLQSP------D----------SQLKEMSAFALGRLAQD-T-HNQAGIAQDGGI  362 (704)
Q Consensus       308 ---~~--~~~~~~--~~~~~i~~L~~ll~~~------~----------~~v~~~a~~~L~~l~~~-~-~~~~~~~~~~~~  362 (704)
                         ..  ......  .-..+++.++.-++.+      +          .+.|+... ++...+.. . +...... ...+
T Consensus       364 ~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l~~~-~~~i  441 (980)
T 3ibv_A          364 RKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSLFSSYM-YSAI  441 (980)
T ss_dssp             HHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHHHHHHH-HHHH
T ss_pred             HhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHHHHHHhcChHHHHHHH-HHHH
Confidence               10  011111  0012344444444321      1          13454444 33333221 1 1111100 0112


Q ss_pred             HH-HHHhhc---CCChhHHHHHHHHHHHcccCCch-hhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhH
Q 005282          363 LP-LLKLLD---SKNGSLQHNAAFALYGLADNEDN-VADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLN  437 (704)
Q Consensus       363 ~~-L~~ll~---~~~~~v~~~a~~~L~~l~~~~~~-~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (704)
                      .. +-+.+.   +.++...+.++.+|+.++..-.+ ...+  .+.-+.+                          ..+++
T Consensus       442 ~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~--~~~~~~l--------------------------p~l~~  493 (980)
T 3ibv_A          442 TSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFF--NEVDKSP--------------------------TVLSQ  493 (980)
T ss_dssp             HHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTB--CSSSCCB--------------------------CHHHH
T ss_pred             HHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhcccccccc--Ccccchh--------------------------HHHHH
Confidence            22 223332   23567888999999998752111 1111  0100111                          01334


Q ss_pred             HHHHHHh-----hccHHHHHHHHHHHHhccCCCccceeeecCCcHHHHHHHHh------hcchhhhhhHHHHHHHHhhhc
Q 005282          438 HLLYLLR-----VADRAVKRRVTLALAHLCAPDDCKTIFIDNNGLELLLGLLE------STSVKQREESSVALYKLATKA  506 (704)
Q Consensus       438 ~L~~ll~-----~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~ll~------~~~~~~~~~a~~~L~~L~~~~  506 (704)
                      .+..++.     ..++.++..++++++..+..-....     .-++.++..+-      ++++.++.+|+.++.++++..
T Consensus       494 ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~-----~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~  568 (980)
T 3ibv_A          494 ILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYES-----AAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSI  568 (980)
T ss_dssp             HHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCC-----TTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCc-----hhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHh
Confidence            4555554     5789999999999999976533221     33555544443      467789999999999999987


Q ss_pred             C
Q 005282          507 T  507 (704)
Q Consensus       507 ~  507 (704)
                      .
T Consensus       569 ~  569 (980)
T 3ibv_A          569 K  569 (980)
T ss_dssp             T
T ss_pred             h
Confidence            5

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=96.85  E-value=0.19  Score=58.35  Aligned_cols=95  Identities=14%  Similarity=0.127  Sum_probs=65.2

Q ss_pred             cCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhh---CCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChH
Q 005282          287 SSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEML---QSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGIL  363 (704)
Q Consensus       287 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll---~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~  363 (704)
                      .+.++..++.++++++.++.+-....     ...++.++..+   .++++.++..++++++.++..-..... .-...++
T Consensus       459 ~~~~w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~-~l~~vl~  532 (963)
T 2x19_B          459 EPYSWQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPV-MINSVLP  532 (963)
T ss_dssp             CSCCHHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHH-HHTTTHH
T ss_pred             CCCchHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHH-HHHHHHH
Confidence            45677889999999999986543221     12334444433   335788999999999999854221112 2235677


Q ss_pred             HHHHhhcCCChhHHHHHHHHHHHccc
Q 005282          364 PLLKLLDSKNGSLQHNAAFALYGLAD  389 (704)
Q Consensus       364 ~L~~ll~~~~~~v~~~a~~~L~~l~~  389 (704)
                      .++..+++  +.++..|+.++.+++.
T Consensus       533 ~l~~~l~~--~~V~~~A~~al~~l~~  556 (963)
T 2x19_B          533 LVLHALGN--PELSVSSVSTLKKICR  556 (963)
T ss_dssp             HHHHHTTC--GGGHHHHHHHHHHHHH
T ss_pred             HHHHHhCC--chHHHHHHHHHHHHHH
Confidence            78877754  8899999999999974

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=96.84  E-value=0.0063  Score=62.32  Aligned_cols=250  Identities=16%  Similarity=0.102  Sum_probs=156.8

Q ss_pred             ChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChh--hHHHHHHcCCcHHHHHHHhh--ccCCCCCcchhHH
Q 005282           93 AVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPE--HQQIIVDTGALPHLVSLLKQ--YKNGGNSRALSGV  167 (704)
Q Consensus        93 ~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~--~~~~~~~~g~l~~L~~lL~~--~~~~~~~~~~~~~  167 (704)
                      ..+.|+.-|-++..          ++|.-|+-+|..+. ....  .+..-......-.++-++.-  ..+-.+....-.+
T Consensus       175 fcE~L~~DLFdp~W----------EiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPV  244 (800)
T 3oc3_A          175 FFEQISDNLLSYEW----------YKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPV  244 (800)
T ss_dssp             TTHHHHHHTTCSSH----------HHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHH
T ss_pred             HHHHHHHHhcCcch----------hhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeeh
Confidence            45666666777765          99999999999988 2211  11000000222223322221  1111111112389


Q ss_pred             HHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCC
Q 005282          168 IRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSE  247 (704)
Q Consensus       168 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~  247 (704)
                      |+.|+++|+.+ ..-+.-      ..++..++..+..+.++++..++-.|..+..   -.. .  -.++++.++..|.+.
T Consensus       245 RETaAQtLGaL-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~D---LL~-~--Ld~Vv~aVL~GL~D~  311 (800)
T 3oc3_A          245 RDAAAYLLSRI-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYLKE---FVE-D--KDGLCRKLVSLLSSP  311 (800)
T ss_dssp             HHHHHHHHHHH-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGG---GCC-C--HHHHHHHHHHHTTCS
T ss_pred             HHHHHHHHHHH-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHHHH---HHH-H--HHHHHHHHHhhcCCc
Confidence            99999999998 543322      2334444455578889999999999999921   111 1  245678888899999


Q ss_pred             CHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCC-h-hHHHHHHHHHHHHhccCCcchHHHHhcCChHHHH
Q 005282          248 DASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSC-S-ESKREAALLLGQFAAADSNSKVHIVQRGAVRPLI  325 (704)
Q Consensus       248 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~-~-~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~  325 (704)
                      +++|+..|+.+|.-++ . +....     .++..++..|.+-+ - .........|+.++.......   .....+|.|.
T Consensus       312 DDDVRAVAAetLiPIA-~-p~~l~-----~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~---~dp~LVPRL~  381 (800)
T 3oc3_A          312 DEDIKLLSAELLCHFP-I-TDSLD-----LVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELS---IPPERLKDIF  381 (800)
T ss_dssp             SHHHHHHHHHHHTTSC-C-SSTHH-----HHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCC---CCSGGGGGTG
T ss_pred             ccHHHHHHHHHhhhhc-c-hhhHH-----HHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcccc---cChHHHHHHH
Confidence            9999999999999988 2 22222     24556666665432 1 224455567777776443211   1236889999


Q ss_pred             HhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHH-HhhcCCChhHHHHHHHHHH
Q 005282          326 EMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLL-KLLDSKNGSLQHNAAFALY  385 (704)
Q Consensus       326 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~-~ll~~~~~~v~~~a~~~L~  385 (704)
                      .++++.-+.||..++.+|..+.          ....+..+. +++-+.+++++..+..+-.
T Consensus       382 PFLRHtITSVR~AVL~TL~tfL----------~~~~LRLIFQNILLE~neeIl~lS~~VWk  432 (800)
T 3oc3_A          382 PCFTSPVPEVRTSILNMVKNLS----------EESIDFLVAEVVLIEEKDEIREMAIKLLK  432 (800)
T ss_dssp             GGGTCSSHHHHHHHHHHTTTCC----------CHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred             hhhcCCcHHHHHHHHHHHHHHH----------hhhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence            9999999999999999998877          111233333 5567788999888887775

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=96.80  E-value=0.0013  Score=61.86  Aligned_cols=179  Identities=20%  Similarity=0.170  Sum_probs=109.7

Q ss_pred             ChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCC
Q 005282           81 NEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGN  160 (704)
Q Consensus        81 ~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~  160 (704)
                      ++..+......=....+..++++++.          .||..++..|   .              .+.|..++.+.+.   
T Consensus        63 ~~~VR~~AA~~l~~~~l~~L~~D~~~----------~VR~~aA~~L---~--------------~~~L~~ll~D~d~---  112 (244)
T 1lrv_A           63 FWERRAIAVRYSPVEALTPLIRDSDE----------VVRRAVAYRL---P--------------REQLSALMFDEDR---  112 (244)
T ss_dssp             SHHHHHHHHTTSCGGGGGGGTTCSSH----------HHHHHHHTTS---C--------------SGGGGGTTTCSCH---
T ss_pred             CHHHHHHHHHhCCHHHHHHHccCcCH----------HHHHHHHHHC---C--------------HHHHHHHHcCCCH---
Confidence            35666666554334445555555543          6776666532   1              1344455554443   


Q ss_pred             CcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHH
Q 005282          161 SRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTL  240 (704)
Q Consensus       161 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L  240 (704)
                           .++..++..+   .               .+.+..+++++++.++..+...   +.               .+.+
T Consensus       113 -----~VR~~aA~~l---~---------------~~~L~~L~~D~d~~VR~~aA~~---l~---------------~~~l  151 (244)
T 1lrv_A          113 -----EVRITVADRL---P---------------LEQLEQMAADRDYLVRAYVVQR---IP---------------PGRL  151 (244)
T ss_dssp             -----HHHHHHHHHS---C---------------TGGGGGGTTCSSHHHHHHHHHH---SC---------------GGGG
T ss_pred             -----HHHHHHHHhC---C---------------HHHHHHHHcCCCHHHHHHHHHh---cC---------------HHHH
Confidence                 7776666632   1               1235556677888888877762   21               1234


Q ss_pred             HHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCC
Q 005282          241 VLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGA  320 (704)
Q Consensus       241 ~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~  320 (704)
                      ..+++++++.||..++..+   .               .+.+..++.++++.++..++..+                  .
T Consensus       152 ~~l~~D~d~~VR~~aa~~l---~---------------~~ll~~ll~D~d~~VR~aaa~~l------------------~  195 (244)
T 1lrv_A          152 FRFMRDEDRQVRKLVAKRL---P---------------EESLGLMTQDPEPEVRRIVASRL------------------R  195 (244)
T ss_dssp             GGTTTCSCHHHHHHHHHHS---C---------------GGGGGGSTTCSSHHHHHHHHHHC------------------C
T ss_pred             HHHHcCCCHHHHHHHHHcC---C---------------HHHHHHHHcCCCHHHHHHHHHhC------------------C
Confidence            4567788888888887741   1               13444567788888888777642                  2


Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHH
Q 005282          321 VRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFAL  384 (704)
Q Consensus       321 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L  384 (704)
                      .+.|..++.+++..|+..++..+.                 .+.|..+ .+.++.|+..+...|
T Consensus       196 ~~~L~~Ll~D~d~~VR~~aa~~l~-----------------~~~L~~L-~D~~~~VR~aa~~~L  241 (244)
T 1lrv_A          196 GDDLLELLHDPDWTVRLAAVEHAS-----------------LEALREL-DEPDPEVRLAIAGRL  241 (244)
T ss_dssp             GGGGGGGGGCSSHHHHHHHHHHSC-----------------HHHHHHC-CCCCHHHHHHHHCCC
T ss_pred             HHHHHHHHcCCCHHHHHHHHHcCC-----------------HHHHHHc-cCCCHHHHHHHHHHh
Confidence            356777788888889888888753                 2445555 888888888887654

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=96.77  E-value=0.051  Score=52.41  Aligned_cols=208  Identities=14%  Similarity=0.169  Sum_probs=154.7

Q ss_pred             hhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhh----HHhHh-cCChHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 005282          189 VRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENK----KLIVE-CNALPTLVLMLRSEDASVHFEAVGVIGNLV  263 (704)
Q Consensus       189 ~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~----~~~~~-~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~  263 (704)
                      +...+.+..|+..|..=+-+.++.+..+..++.......+    +.+.. ..++..|+..-  +++++...+...|..+.
T Consensus        74 i~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY--e~~diAl~~G~mLReci  151 (341)
T 1upk_A           74 LYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGY--ESPEIALNCGIMLRECI  151 (341)
T ss_dssp             HHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGG--GSTTTHHHHHHHHHHHH
T ss_pred             HHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhh--ccchhHhHHHHHHHHHH
Confidence            4455778888888888889999999999999976443322    22222 22333333333  35566666777777777


Q ss_pred             cCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhc---CChHHHHHhhCCCCHHHHHHHH
Q 005282          264 HSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQR---GAVRPLIEMLQSPDSQLKEMSA  340 (704)
Q Consensus       264 ~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~---~~i~~L~~ll~~~~~~v~~~a~  340 (704)
                      .+ +.....+...+.+-.+...+..++-++...|..++..+...++.....++..   .+....-+++.+++.-++..++
T Consensus       152 r~-e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSl  230 (341)
T 1upk_A          152 RH-EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSL  230 (341)
T ss_dssp             TS-HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred             Hh-HHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHH
Confidence            65 6777777777788888999999999999999999988876665555555443   3567788889999999999999


Q ss_pred             HHHHHhhcCCchhhhHHh----hCChHHHHHhhcCCChhHHHHHHHHHHHcccCCchhhHHHh
Q 005282          341 FALGRLAQDTHNQAGIAQ----DGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADLVR  399 (704)
Q Consensus       341 ~~L~~l~~~~~~~~~~~~----~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~  399 (704)
                      ..|+.+.....+...+..    ..-+..++.+|++.+..+|..|..+..-+..+|..-+.+.+
T Consensus       231 KLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~  293 (341)
T 1upk_A          231 KLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILD  293 (341)
T ss_dssp             HHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHH
T ss_pred             HHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHH
Confidence            999999988777655433    34577789999999999999999999999887776555443

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=96.76  E-value=0.009  Score=61.19  Aligned_cols=203  Identities=18%  Similarity=0.097  Sum_probs=133.4

Q ss_pred             hhHHHHHHHHHHHHhhhcChhhhhhhhcc--CCcHHHHHHhc-------CC---CHHHHHHHHHHHHHhccCCchhhHHh
Q 005282          164 LSGVIRRAADAITNLAHENANIKTRVRVE--DGIPPLVELLK-------FV---DVKVQRAAAGALRTLAFKNDENKKLI  231 (704)
Q Consensus       164 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~--~~i~~L~~ll~-------~~---~~~~~~~a~~~L~~l~~~~~~~~~~~  231 (704)
                      .|++|.-|+.+|+.+..............  +..-.|+.++.       .+   -..||+.++.+|+.+ ..-+..    
T Consensus       187 ~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL-~hLp~e----  261 (800)
T 3oc3_A          187 EWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI-YPLIGP----  261 (800)
T ss_dssp             SHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH-TTTSCS----
T ss_pred             chhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHH-HhCChh----
Confidence            48999999999999885432211111111  22233333332       11   257999999999999 544443    


Q ss_pred             HhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcc
Q 005282          232 VECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNS  311 (704)
Q Consensus       232 ~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~  311 (704)
                        ..++..++..+..+..+++..++-.|..+.   +-...   -.++++.++..|.+.+.+++..|+.+|..++  .++.
T Consensus       262 --~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~---DLL~~---Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA--~p~~  331 (800)
T 3oc3_A          262 --NDIIEQLVGFLDSGDWQVQFSGLIALGYLK---EFVED---KDGLCRKLVSLLSSPDEDIKLLSAELLCHFP--ITDS  331 (800)
T ss_dssp             --CCHHHHHTTGGGCSCHHHHHHHHHHHHHTG---GGCCC---HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC--CSST
T ss_pred             --HHHHHHHHhhcCCCCeeehhhhHHHHHHHH---HHHHH---HHHHHHHHHhhcCCcccHHHHHHHHHhhhhc--chhh
Confidence              344555666667889999999999999982   21111   2456788888899999999999999999887  3332


Q ss_pred             hHHHHhcCChHHHHHhhCCCC--HHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcc
Q 005282          312 KVHIVQRGAVRPLIEMLQSPD--SQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLA  388 (704)
Q Consensus       312 ~~~~~~~~~i~~L~~ll~~~~--~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~  388 (704)
                      ..     .++..+...|.+.+  ..........|+.|+..+....  .....+|.|...+++.-++||..++.+|..+.
T Consensus       332 l~-----~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~--~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL  403 (800)
T 3oc3_A          332 LD-----LVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELS--IPPERLKDIFPCFTSPVPEVRTSILNMVKNLS  403 (800)
T ss_dssp             HH-----HHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCC--CCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC
T ss_pred             HH-----HHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcccc--cChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Confidence            22     23555555554422  1223455677777776553211  11266788889999999999999999998887

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=96.74  E-value=0.14  Score=59.42  Aligned_cols=217  Identities=12%  Similarity=0.102  Sum_probs=120.2

Q ss_pred             hHHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCc
Q 005282          116 HEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGI  195 (704)
Q Consensus       116 ~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i  195 (704)
                      ...++.|+.+++.++.......    ...++.++.++..-...   ++.+.++..++++++.++..-.....  .-...+
T Consensus       478 w~~~eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~l~~~---d~~~~vr~~a~~~l~~~~~~l~~~~~--~l~~vl  548 (971)
T 2x1g_F          478 WTKLEACIYSFQSVAEHFGGEE----KRQIPRLMRVLAEIPYE---KLNVKLLGTALETMGSYCNWLMENPA--YIPPAI  548 (971)
T ss_dssp             CHHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTT---TSCHHHHHHHHHHHHHTHHHHC------CHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHhcCcc---ccCHHHHHHHHHHHHHHHHHHhcCHH--HHHHHH
Confidence            3789999999999993322111    13445555554332210   01238999999999999843211111  112345


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhH--hcCChHHHHHhhcC--CCHHHHHHHHHHHHHHhcCCh-hhH
Q 005282          196 PPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIV--ECNALPTLVLMLRS--EDASVHFEAVGVIGNLVHSSP-SIK  270 (704)
Q Consensus       196 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~--~~~~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~-~~~  270 (704)
                      +.|+..+ +  +.++..|+.++.+++....   ..+.  -..++..+..++..  .+...+..+..+++.++..-+ +..
T Consensus       549 ~~l~~~l-~--~~v~~~A~~al~~l~~~~~---~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~  622 (971)
T 2x1g_F          549 NLLVRGL-N--SSMSAQATLGLKELCRDCQ---LQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEI  622 (971)
T ss_dssp             HHHHHHH-H--SSCHHHHHHHHHHHHHHCH---HHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHH
T ss_pred             HHHHHHh-C--hHHHHHHHHHHHHHHHHHH---HhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHH
Confidence            6666666 2  7799999999999996332   2222  12345566666766  357889999999999886432 211


Q ss_pred             HHHHHcCCHHHHHH----HhcCC--ChhHHHHHHHHHHHHh---ccCCc------------chHHHHhcCChHHHHHhhC
Q 005282          271 KEVILAGALQPVIG----LLSSS--CSESKREAALLLGQFA---AADSN------------SKVHIVQRGAVRPLIEMLQ  329 (704)
Q Consensus       271 ~~~~~~~~l~~L~~----ll~~~--~~~~~~~a~~~L~~l~---~~~~~------------~~~~~~~~~~i~~L~~ll~  329 (704)
                      .... ...++.++.    ++...  +.+.+.....++..++   ..-..            ....-....+++.+..++.
T Consensus       623 ~~~~-~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~  701 (971)
T 2x1g_F          623 PKYL-DIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAE  701 (971)
T ss_dssp             HHHH-HHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHH
T ss_pred             HHHH-HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHH
Confidence            1111 123333333    33332  2323333333333332   21000            0011223467787777775


Q ss_pred             C--CCHHHHHHHHHHHHHhhc
Q 005282          330 S--PDSQLKEMSAFALGRLAQ  348 (704)
Q Consensus       330 ~--~~~~v~~~a~~~L~~l~~  348 (704)
                      .  .+..+.+.++++++.++.
T Consensus       702 ~~~~~~~v~e~~~~~~~~~~~  722 (971)
T 2x1g_F          702 MWVEEIDVLEAACSAMKHAIT  722 (971)
T ss_dssp             HTTTCHHHHHHHHHHHHHHHH
T ss_pred             hccccHHHHHHHHHHHHHHHH
Confidence            3  467899999999999775

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=96.73  E-value=0.024  Score=53.57  Aligned_cols=174  Identities=10%  Similarity=0.077  Sum_probs=117.5

Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHh----hcCCCHHHHHHHHHHHHHHhcC----Chhh
Q 005282          198 LVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLM----LRSEDASVHFEAVGVIGNLVHS----SPSI  269 (704)
Q Consensus       198 L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l----L~~~~~~v~~~a~~~L~~l~~~----~~~~  269 (704)
                      +...+-+.|..-+..++..|......+++   .+..  .+..+++.    +.+.+..+...++.+|..+...    ....
T Consensus        51 ~~~~lfs~d~k~~~~ale~L~~~l~~~~~---~~~~--~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~  125 (266)
T 2of3_A           51 LMSQLFHKDFKQHLAALDSLVRLADTSPR---SLLS--NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPM  125 (266)
T ss_dssp             HHHHHTCSCHHHHHHHHHHHHHHHHHCHH---HHHH--THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHhhhChH---HHHH--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccc
Confidence            55555666777777777777776543322   2221  23334443    3378999999999888887521    1111


Q ss_pred             HHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcC
Q 005282          270 KKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQD  349 (704)
Q Consensus       270 ~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~  349 (704)
                      .. .-..-++|.|+.-+.++...+|..+-.++..++.-.+.       ..+.+.+...+++.+..++..++..+..+...
T Consensus       126 ~~-~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~-------~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~  197 (266)
T 2of3_A          126 SQ-EEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP-------LKMTPMLLDALKSKNARQRSECLLVIEYYITN  197 (266)
T ss_dssp             CH-HHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             hH-HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence            11 11123689999999888888888877777666532211       23577888888999999999999999998743


Q ss_pred             CchhhhHHhhCCh---HHHHHhhcCCChhHHHHHHHHHHHcc
Q 005282          350 THNQAGIAQDGGI---LPLLKLLDSKNGSLQHNAAFALYGLA  388 (704)
Q Consensus       350 ~~~~~~~~~~~~~---~~L~~ll~~~~~~v~~~a~~~L~~l~  388 (704)
                      ....    ...++   +.+.+++.+.|.+||..|..++..+-
T Consensus       198 ~G~~----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y  235 (266)
T 2of3_A          198 AGIS----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACF  235 (266)
T ss_dssp             HCSG----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHH
T ss_pred             cCCC----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            2211    23467   88999999999999999999998764

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=96.53  E-value=0.13  Score=59.54  Aligned_cols=317  Identities=9%  Similarity=0.084  Sum_probs=162.0

Q ss_pred             HHHHHHHHHHHhhhccCCchhhHHHHHHHHHHHHHhhcChhHHHHHHhCCChHHHH-hhccCCCcCCCCCCCCchHHHHH
Q 005282           43 LVQDIRAQIDILNSKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALV-EHLQTPPQLTNAQIPYEHEVEKE  121 (704)
Q Consensus        43 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~-~lL~~~~~~~~~~~~~d~~v~~~  121 (704)
                      +....+.+++.+..++..... ......++.++.....--.. ..+++.+.++.++ .+|..+            +++..
T Consensus       188 l~~~~~~I~~ll~~iL~~~~~-~~l~~~~L~~l~s~l~WI~i-~~i~~~~ll~~l~~~~L~~~------------~~r~~  253 (1023)
T 4hat_C          188 MSKEFEQIFKLCFQVLEQGAS-SSLIVATLESLLRYLHWIPY-RYIYETNILELLSTKFMTSP------------DTRAI  253 (1023)
T ss_dssp             HHHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTTSCT-HHHHSSSHHHHHHTHHHHSH------------HHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHhCCH-HHhcchhHHHHHHHHHcCCH------------HHHHH
Confidence            345566777777666643322 23456677888776653222 4456788999999 888543            79999


Q ss_pred             HHHHHHhhcC-C---h--hhHHHHHHc--CCcHH-----------HHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcC
Q 005282          122 CAFALGLLAV-K---P--EHQQIIVDT--GALPH-----------LVSLLKQYKNGGNSRALSGVIRRAADAITNLAHEN  182 (704)
Q Consensus       122 a~~~L~~l~~-~---~--~~~~~~~~~--g~l~~-----------L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~  182 (704)
                      |+.+|..+.+ .   +  .....+...  +.+..           +...+...+     ..+.+.....+..+..+....
T Consensus       254 A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~-----~~D~e~~~~l~~l~~~~~e~~  328 (1023)
T 4hat_C          254 TLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANAN-----GNDQSFLQDLAMFLTTYLARN  328 (1023)
T ss_dssp             HHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTC-----TTHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccc-----cchHHHHHHHHHHHHHHHHHH
Confidence            9999999984 2   2  121111100  11111           111122211     112366666676766665322


Q ss_pred             hhhhhhhhcc-C-------CcHHHHHHhcCCCHHHHHHHHHHHHHhccC---CchhhHHhH--hcCChHHHHHhhcCCC-
Q 005282          183 ANIKTRVRVE-D-------GIPPLVELLKFVDVKVQRAAAGALRTLAFK---NDENKKLIV--ECNALPTLVLMLRSED-  248 (704)
Q Consensus       183 ~~~~~~~~~~-~-------~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~---~~~~~~~~~--~~~~i~~L~~lL~~~~-  248 (704)
                      ..   .+... +       ++..|+.+-..++.++-..++..=..++.+   .+..+....  -...++.+++-+.-+. 
T Consensus       329 ~~---li~~~~~~~~~l~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e  405 (1023)
T 4hat_C          329 RA---LLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEE  405 (1023)
T ss_dssp             GG---GGTSCGGGHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTT
T ss_pred             HH---HHhCCcchhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence            11   11111 1       122344444456777766666543344320   111111110  0123444444443221 


Q ss_pred             -------------------HH-HH----HHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcC--CChhHHHHHHHHHH
Q 005282          249 -------------------AS-VH----FEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSS--SCSESKREAALLLG  302 (704)
Q Consensus       249 -------------------~~-v~----~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~--~~~~~~~~a~~~L~  302 (704)
                                         ++ ..    +.++..+.++..  +....     -.++.+...+.+  .++..++.++++++
T Consensus       406 ~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~l~~l~~--~~~~~-----~~~~~l~~~l~~~~~~W~~~EA~~~a~g  478 (1023)
T 4hat_C          406 VLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNV--IDTEE-----IMISKLARQIDGSEWSWHNINTLSWAIG  478 (1023)
T ss_dssp             CCEEECTTSCEEECSSCCGGGHHHHHHHHHHHHHHHHHCH--HHHHH-----HHHHHHHHHHSSTTCCHHHHHHHHHHHH
T ss_pred             cccCCCCCccHHHHhccchHHHHHHHHHHHHHHHHhccCH--HHHHH-----HHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence                               00 11    122222322221  11111     112333333433  57889999999999


Q ss_pred             HHhccCCcchHHHHhcCChHHHHHhhCC-----CCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHH
Q 005282          303 QFAAADSNSKVHIVQRGAVRPLIEMLQS-----PDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQ  377 (704)
Q Consensus       303 ~l~~~~~~~~~~~~~~~~i~~L~~ll~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~  377 (704)
                      .++.+..+....-.-..+++.|+.++.+     +...++..++++++..+..-...... -...+..++..+++.++.++
T Consensus       479 aIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~-L~~vl~~L~~~l~~~~~~v~  557 (1023)
T 4hat_C          479 SISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNF-LRTVILKLFEFMHETHEGVQ  557 (1023)
T ss_dssp             HTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHH-HHHHHHHHHHHTTCSCHHHH
T ss_pred             HHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHH-HHHHHHHHHHHhhcCCHHHH
Confidence            9986443322222223467778887753     22345567889999887543222222 11233445555666788999


Q ss_pred             HHHHHHHHHccc
Q 005282          378 HNAAFALYGLAD  389 (704)
Q Consensus       378 ~~a~~~L~~l~~  389 (704)
                      ..|++++.+++.
T Consensus       558 ~~A~~al~~l~~  569 (1023)
T 4hat_C          558 DMACDTFIKIVQ  569 (1023)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999999985

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=96.53  E-value=0.17  Score=48.88  Aligned_cols=204  Identities=13%  Similarity=0.151  Sum_probs=149.9

Q ss_pred             HHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhh----hhhhc-cCCcHHHHHHhcCCCHHHHH
Q 005282          137 QIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIK----TRVRV-EDGIPPLVELLKFVDVKVQR  211 (704)
Q Consensus       137 ~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~----~~~~~-~~~i~~L~~ll~~~~~~~~~  211 (704)
                      ..+...+.+..|+..|..-+-        +.+..+..++.++.......+    ..+.. ..++..|+..-  +++++-.
T Consensus        72 ~ei~~~dll~~Li~~l~~L~f--------E~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY--e~~diAl  141 (341)
T 1upk_A           72 QELYNSGLLSTLVADLQLIDF--------EGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGY--ESPEIAL  141 (341)
T ss_dssp             HHHHHHSHHHHHHHTGGGSCH--------HHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGG--GSTTTHH
T ss_pred             HHHHHhCHHHHHHHhcccCCc--------hhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhh--ccchhHh
Confidence            455667788888888887654        888999999988875433221    12221 12222222222  3556677


Q ss_pred             HHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcC---CHHHHHHHhcC
Q 005282          212 AAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAG---ALQPVIGLLSS  288 (704)
Q Consensus       212 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~---~l~~L~~ll~~  288 (704)
                      .+...|+.++. .+.....+...+.+..+.+.+..++=++...|..++..+...+......+...+   +....-.+|.+
T Consensus       142 ~~G~mLRecir-~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S  220 (341)
T 1upk_A          142 NCGIMLRECIR-HEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHS  220 (341)
T ss_dssp             HHHHHHHHHHT-SHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHH-hHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcC
Confidence            77788888886 666666677777788888999999999999999999998877676666666543   56777889999


Q ss_pred             CChhHHHHHHHHHHHHhccCCcchHHHHh----cCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCch
Q 005282          289 SCSESKREAALLLGQFAAADSNSKVHIVQ----RGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHN  352 (704)
Q Consensus       289 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~----~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~  352 (704)
                      ++--+++.++..|+.+.. ++.+...+..    ..-+..++.+|++.+..++-.|....--++.++..
T Consensus       221 ~NYVTkRQSlKLLgelLl-dr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K  287 (341)
T 1upk_A          221 ENYVTKRQSLKLLGELLL-DRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNK  287 (341)
T ss_dssp             SSHHHHHHHHHHHHHHHH-SGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSC
T ss_pred             CcchhHHHHHHHHHHHHh-CchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCC
Confidence            999999999999999986 5555444433    35688999999999999999999999888877543

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=96.47  E-value=0.059  Score=52.16  Aligned_cols=179  Identities=15%  Similarity=0.071  Sum_probs=117.3

Q ss_pred             hhHHHHHHHHHHHHhhhcChhhh--hh-hh-ccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCch-----hhHHhHhc
Q 005282          164 LSGVIRRAADAITNLAHENANIK--TR-VR-VEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDE-----NKKLIVEC  234 (704)
Q Consensus       164 ~~~~~~~a~~~L~~l~~~~~~~~--~~-~~-~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~-----~~~~~~~~  234 (704)
                      .|..|..++..|..+....+...  .. +. -....+.+...+.+.+..++..++.++..++.....     ......-.
T Consensus        22 ~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~  101 (278)
T 4ffb_C           22 LWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLIS  101 (278)
T ss_dssp             SHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHH
Confidence            37999999999988875433211  11 11 123456677888899999999999999988752211     11111223


Q ss_pred             CChHHHHH-hhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccC-Cc--
Q 005282          235 NALPTLVL-MLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAAD-SN--  310 (704)
Q Consensus       235 ~~i~~L~~-lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~--  310 (704)
                      .+++.|+. .+.+..+.++..+..++..++...... .     .+++.+...+.+.++.++..++..|..+.... ..  
T Consensus       102 ~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-~-----~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~  175 (278)
T 4ffb_C          102 TWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-T-----QSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNV  175 (278)
T ss_dssp             HHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-H-----HHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred             HHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-H-----HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcC
Confidence            35676765 478889999999998888776432111 1     12456667788999999999998888776431 11  


Q ss_pred             chHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcC
Q 005282          311 SKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQD  349 (704)
Q Consensus       311 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~  349 (704)
                      ..... -..+++.+..++.+.++.||..|..++..+-..
T Consensus       176 ~~k~~-l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~  213 (278)
T 4ffb_C          176 NVQTF-LPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV  213 (278)
T ss_dssp             CHHHH-HHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred             CchhH-HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence            11111 123566778888999999999999999887653

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=96.33  E-value=0.17  Score=59.22  Aligned_cols=297  Identities=12%  Similarity=0.060  Sum_probs=149.0

Q ss_pred             hHHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhh-----hhhhh
Q 005282          116 HEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANI-----KTRVR  190 (704)
Q Consensus       116 ~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~-----~~~~~  190 (704)
                      .+++..++.++.+....-.. ..+.+...++.+++.+.. +        ++++..++.+|..+.......     ...+.
T Consensus       209 ~~~~~~aL~~l~~~l~wi~~-~~~~~~~ll~~l~~~~l~-~--------~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~  278 (1049)
T 3m1i_C          209 SSLIVATLESLLRYLHWIPY-RYIYETNILELLSTKFMT-S--------PDTRAITLKCLTEVSNLKIPQDNDLIKRQTV  278 (1049)
T ss_dssp             HHHHHHHHHHHHHHTTTSCT-HHHHSSSHHHHHHTHHHH-S--------HHHHHHHHHHHHHHHHCCCCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhCCH-HHHhhhhHHHHHHHHhCC-C--------HhHHHHHHHHHHHHHhCCCCcchhhHHHHHH
Confidence            47899999999887632111 224445556666633222 2        288999999999988542111     11000


Q ss_pred             c--cCCcHHHHH-H-------------hcCCCHHHHHHHHHHHHHhcc-------CCchhhHHhHhcCChHHHHHhhcCC
Q 005282          191 V--EDGIPPLVE-L-------------LKFVDVKVQRAAAGALRTLAF-------KNDENKKLIVECNALPTLVLMLRSE  247 (704)
Q Consensus       191 ~--~~~i~~L~~-l-------------l~~~~~~~~~~a~~~L~~l~~-------~~~~~~~~~~~~~~i~~L~~lL~~~  247 (704)
                      .  .+.+..+.. +             ....+.+.....+..+..+..       ..+.....+  ..+++.++.....+
T Consensus       279 ~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l--~~~l~~ll~~~~~~  356 (1049)
T 3m1i_C          279 LFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELL--LNAHQYLIQLSKIE  356 (1049)
T ss_dssp             HHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHH--HHHHHHHHHHHTSS
T ss_pred             HHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHH--HHHHHHHHHHHcCC
Confidence            0  111221111 1             112244444455555544332       111111111  13466666666677


Q ss_pred             CHHHHHHHHHHHHHHhc----CC--hhhHHHHHHcCCHHHHHHHhcCC-------------------Ch---hHHHHHHH
Q 005282          248 DASVHFEAVGVIGNLVH----SS--PSIKKEVILAGALQPVIGLLSSS-------------------CS---ESKREAAL  299 (704)
Q Consensus       248 ~~~v~~~a~~~L~~l~~----~~--~~~~~~~~~~~~l~~L~~ll~~~-------------------~~---~~~~~a~~  299 (704)
                      +.++...++..+..++.    ..  ......+. ...++.++..+.-+                   +.   ..+..+..
T Consensus       357 d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l-~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~  435 (1049)
T 3m1i_C          357 ERELFKTTLDYWHNLVADLFYEPLKKHIYEEIC-SQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSERE  435 (1049)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHH-HHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHH-HHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHH
Confidence            88999989888877775    11  11111111 12334444444211                   00   11334555


Q ss_pred             HHHHHhccCCcchHHHHhcCChHHHHHhhC--CCCHHHHHHHHHHHHHhhcCCchh-hhHHhhCChHHHHHhhcC-----
Q 005282          300 LLGQFAAADSNSKVHIVQRGAVRPLIEMLQ--SPDSQLKEMSAFALGRLAQDTHNQ-AGIAQDGGILPLLKLLDS-----  371 (704)
Q Consensus       300 ~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~~~~~L~~ll~~-----  371 (704)
                      +|..++...+....    .-+.+.+-..+.  ..+...++.++++++.++..-... ..-.-...++.+..+...     
T Consensus       436 ~L~~l~~~~~~~~l----~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~  511 (1049)
T 3m1i_C          436 VLVYLTHLNVIDTE----EIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKD  511 (1049)
T ss_dssp             HHHHHHHHCHHHHH----HHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHH
T ss_pred             HHHHHHccCHHHHH----HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhcccc
Confidence            66666532211111    112344444444  356788999999999998653222 111111223333333221     


Q ss_pred             CChhHHHHHHHHHHHcccCCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHH
Q 005282          372 KNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVK  451 (704)
Q Consensus       372 ~~~~v~~~a~~~L~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~  451 (704)
                      ..+-++..++++++.++..      +...                            ......+++.++..+.+.++.++
T Consensus       512 ~~~~v~~~~~~~lgry~~~------~~~~----------------------------~~~l~~vl~~ll~~l~~~~~~V~  557 (1049)
T 3m1i_C          512 NKAVVASDIMYVVGQYPRF------LKAH----------------------------WNFLRTVILKLFEFMHETHEGVQ  557 (1049)
T ss_dssp             HHHHHHHHHHHHHHHCHHH------HHHC----------------------------HHHHHHHHHHHHHHTTSSCHHHH
T ss_pred             chHHHHHHHHHHHHHHHHH------HHhH----------------------------HHHHHHHHHHHHHHhcCCCHHHH
Confidence            2233444677888877531      0000                            00112255667777778889999


Q ss_pred             HHHHHHHHhccC
Q 005282          452 RRVTLALAHLCA  463 (704)
Q Consensus       452 ~~a~~~L~~l~~  463 (704)
                      ..||.++.+++.
T Consensus       558 ~~A~~al~~l~~  569 (1049)
T 3m1i_C          558 DMACDTFIKIVQ  569 (1049)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999999976

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=96.30  E-value=0.038  Score=63.78  Aligned_cols=141  Identities=11%  Similarity=0.018  Sum_probs=86.9

Q ss_pred             hhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcC-----CCHHHHHHHHHHHHHhccCCchhhHHhHhcCChH
Q 005282          164 LSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKF-----VDVKVQRAAAGALRTLAFKNDENKKLIVECNALP  238 (704)
Q Consensus       164 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~  238 (704)
                      +|..++.++++++.++..-.+....-.-..+++.|+.++..     ....++..++++++..+.--..+.+ .. ..++.
T Consensus       466 ~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~-~L-~~vl~  543 (1023)
T 4hat_C          466 SWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWN-FL-RTVIL  543 (1023)
T ss_dssp             CHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHH-HH-HHHHH
T ss_pred             CHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHH-HH-HHHHH
Confidence            58999999999999996433322333445567778887763     2234555677888877641111111 11 12355


Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHH------cCCHHHHH----HHhcCCChhHHHHHHHHHHHHhccC
Q 005282          239 TLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVIL------AGALQPVI----GLLSSSCSESKREAALLLGQFAAAD  308 (704)
Q Consensus       239 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~------~~~l~~L~----~ll~~~~~~~~~~a~~~L~~l~~~~  308 (704)
                      .|+..+.++++.++..|++++.+++..   +...+..      ...++.++    .....-+......+..+++.+....
T Consensus       544 ~L~~~l~~~~~~v~~~A~~al~~l~~~---c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~  620 (1023)
T 4hat_C          544 KLFEFMHETHEGVQDMACDTFIKIVQK---CKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEE  620 (1023)
T ss_dssp             HHHHHTTCSCHHHHHHHHHHHHHHHHH---HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHhhcCCHHHHHHHHHHHHHHHHH---HHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC
Confidence            566666677899999999999999953   4444432      11334333    3333445566677788888887654


Q ss_pred             C
Q 005282          309 S  309 (704)
Q Consensus       309 ~  309 (704)
                      +
T Consensus       621 ~  621 (1023)
T 4hat_C          621 R  621 (1023)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=96.20  E-value=0.15  Score=46.87  Aligned_cols=223  Identities=11%  Similarity=0.117  Sum_probs=140.0

Q ss_pred             HHHHHHHHHHHhhc-CChhhHHHHHHc-CCcHHHHHHHhhccCC--CC--CcchhHHHHHHHHHHHHhhhcChhhhhhhh
Q 005282          117 EVEKECAFALGLLA-VKPEHQQIIVDT-GALPHLVSLLKQYKNG--GN--SRALSGVIRRAADAITNLAHENANIKTRVR  190 (704)
Q Consensus       117 ~v~~~a~~~L~~l~-~~~~~~~~~~~~-g~l~~L~~lL~~~~~~--~~--~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~  190 (704)
                      +.|+.|+.-|+.=- ..++....+... |.+..|++-+-+..+.  ++  ......=.-+++..|..++ .+++.+..+.
T Consensus        16 ~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvA-shpetr~~Fl   94 (268)
T 2fv2_A           16 ETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVA-SHPETRSAFL   94 (268)
T ss_dssp             TTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHH-HCTTTHHHHH
T ss_pred             hhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHH-cCcchhhHHH
Confidence            56777777766655 455555556555 5555555544332211  00  0000112234444455555 4888999999


Q ss_pred             ccCCcHHHHHHhcCCC-----HHHHHHHHHHHHHhcc-CCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhc
Q 005282          191 VEDGIPPLVELLKFVD-----VKVQRAAAGALRTLAF-KNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVH  264 (704)
Q Consensus       191 ~~~~i~~L~~ll~~~~-----~~~~~~a~~~L~~l~~-~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~  264 (704)
                      +.++.-.|..+|...+     +.+|..++++++.+.. ++++....+.+.+++|..++.+..+++-.+..|..++..+..
T Consensus        95 ~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKIL~  174 (268)
T 2fv2_A           95 AAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILL  174 (268)
T ss_dssp             HTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             HccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHHhc
Confidence            9999889999998433     5889999999999986 345666667789999999999999999999999999988876


Q ss_pred             CChhhHHHHHH--------cCCHHHHH-HHhcCCChhHHHHHHHHHHHHhccCCcchHHHHh-------cCChHHHHHhh
Q 005282          265 SSPSIKKEVIL--------AGALQPVI-GLLSSSCSESKREAALLLGQFAAADSNSKVHIVQ-------RGAVRPLIEML  328 (704)
Q Consensus       265 ~~~~~~~~~~~--------~~~l~~L~-~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-------~~~i~~L~~ll  328 (704)
                      ++. ....+..        ..++..++ .+..++++++.+..+++-..++. ++..+..+..       .|.+..++   
T Consensus       175 dd~-GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsd-n~rar~aL~~~LP~~Lrd~tf~~~l---  249 (268)
T 2fv2_A          175 DDT-GLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSD-NPRAREALRQCLPDQLKDTTFAQVL---  249 (268)
T ss_dssp             SHH-HHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTT-SHHHHHHHHHHSCGGGTSSTTHHHH---
T ss_pred             cch-hHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhc-CHHHHHHHHHhCcHHhhChHHHHHH---
Confidence            532 2221111        12333333 33456778888888888888864 4433333321       12222222   


Q ss_pred             CCCCHHHHHHHHHHHHHh
Q 005282          329 QSPDSQLKEMSAFALGRL  346 (704)
Q Consensus       329 ~~~~~~v~~~a~~~L~~l  346 (704)
                       .+|+.++.+-...+.|+
T Consensus       250 -~~D~~~k~~l~qLl~n~  266 (268)
T 2fv2_A          250 -KDDTTTKRWLAQLVKNL  266 (268)
T ss_dssp             -TSCHHHHHHHHHHHHHS
T ss_pred             -hcCHHHHHHHHHHHHhc
Confidence             25677777776666665

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=96.17  E-value=0.043  Score=63.26  Aligned_cols=302  Identities=12%  Similarity=0.086  Sum_probs=158.0

Q ss_pred             hHHHHHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-C--ChhhHHHHH
Q 005282           64 DRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-V--KPEHQQIIV  140 (704)
Q Consensus        64 ~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~--~~~~~~~~~  140 (704)
                      +...+..++.++.....--.. ..+++.+.++.+..+|..+            +++..|+.+|..+. .  .++.+..++
T Consensus       206 ~~~l~~~~L~~l~s~i~wi~~-~~i~~~~ll~~l~~~L~~~------------~~r~~A~ecL~ei~~k~~~~~~k~~li  272 (980)
T 3ibv_A          206 NYGTVGLCLQVYAQWVSWINI-NLIVNEPCMNLLYSFLQIE------------ELRCAACETMTEIVNKKMKPLEKLNLL  272 (980)
T ss_dssp             CHHHHHHHHHHHHHHTTTSCH-HHHHCHHHHHHHHHHTTSH------------HHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhhcCH-HhhhcchHHHHHHHHcCCh------------HHHHHHHHHHHHHHHcCCChhhHHHHH
Confidence            334667888888887763222 3445667888899888763            79999999999999 2  344444444


Q ss_pred             HcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhh------cCh-----hh--hhhhhccCCcHHHHHHhcCCCH
Q 005282          141 DTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAH------ENA-----NI--KTRVRVEDGIPPLVELLKFVDV  207 (704)
Q Consensus       141 ~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~------~~~-----~~--~~~~~~~~~i~~L~~ll~~~~~  207 (704)
                      ..  + .+...+......   ..+.++.+..+..+..++.      ..+     +.  +..-.-.+.++.++.++.+++.
T Consensus       273 ~~--l-~L~~~~~~l~~~---~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~d  346 (980)
T 3ibv_A          273 NI--L-NLNLFFSKSQEQ---STDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYD  346 (980)
T ss_dssp             HH--H-HHHHHHCC--------CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSH
T ss_pred             HH--H-hHHHHHHHHhcc---cccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCch
Confidence            33  1 122222221100   1123555544444433321      111     00  0011223678888899998888


Q ss_pred             HHHHHHHHHHHHhccCCc--h----hhHHh--HhcCChHHHHHhhcCC------C----------HHHHHHHHHHHHHHh
Q 005282          208 KVQRAAAGALRTLAFKND--E----NKKLI--VECNALPTLVLMLRSE------D----------ASVHFEAVGVIGNLV  263 (704)
Q Consensus       208 ~~~~~a~~~L~~l~~~~~--~----~~~~~--~~~~~i~~L~~lL~~~------~----------~~v~~~a~~~L~~l~  263 (704)
                      ++-..++..+..+.....  .    .....  .-...++.+++-+.-+      +          .+.|+.....+..++
T Consensus       347 eVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~~l~d~~~  426 (980)
T 3ibv_A          347 ETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQDTIN  426 (980)
T ss_dssp             HHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHHHHHHHHH
Confidence            888777776665542100  0    00110  0011233344434311      1          134444442333332


Q ss_pred             cCChhhHHHHHHcCCHHHHHHHhc---CCChhHHHHHHHHHHHHhccCCcchHHH-Hhc----CChHHHHHhhC-----C
Q 005282          264 HSSPSIKKEVILAGALQPVIGLLS---SSCSESKREAALLLGQFAAADSNSKVHI-VQR----GAVRPLIEMLQ-----S  330 (704)
Q Consensus       264 ~~~~~~~~~~~~~~~l~~L~~ll~---~~~~~~~~~a~~~L~~l~~~~~~~~~~~-~~~----~~i~~L~~ll~-----~  330 (704)
                      .-.+...-...-.-+.+.+...+.   +.++...+.++.+|+.++.+-......+ -..    .+++.+..++.     .
T Consensus       427 ~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~  506 (980)
T 3ibv_A          427 SIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRH  506 (980)
T ss_dssp             HHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTC
T ss_pred             hcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCC
Confidence            222221111000011112223332   3457778999999999876543321111 001    13455555544     5


Q ss_pred             CCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhh------cCCChhHHHHHHHHHHHccc
Q 005282          331 PDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLL------DSKNGSLQHNAAFALYGLAD  389 (704)
Q Consensus       331 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll------~~~~~~v~~~a~~~L~~l~~  389 (704)
                      +.+.++..++++++..+..-...     ...+++++..+      ++.++.++..|+.++.+++.
T Consensus       507 ~hp~V~~~~~~~l~rys~~~~~~-----~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~  566 (980)
T 3ibv_A          507 PHPLVQLLYMEILVRYASFFDYE-----SAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVK  566 (980)
T ss_dssp             CCHHHHHHHHHHHHHTGGGGGTC-----CTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHhcC-----chhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHH
Confidence            67899999999999988653321     13445555443      35677899999999999985

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=95.93  E-value=0.28  Score=46.30  Aligned_cols=166  Identities=10%  Similarity=0.068  Sum_probs=108.7

Q ss_pred             HHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhc----CCCHHHHHHHHHHHHHhccCCch--hhHHhHh-cCChH
Q 005282          166 GVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLK----FVDVKVQRAAAGALRTLAFKNDE--NKKLIVE-CNALP  238 (704)
Q Consensus       166 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~----~~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~-~~~i~  238 (704)
                      .-+..++..|......++..  .+   ..+..+++.+.    +.+..+...++.+|..+...-.+  .+..-.+ .-++|
T Consensus        61 k~~~~ale~L~~~l~~~~~~--~~---~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP  135 (266)
T 2of3_A           61 KQHLAALDSLVRLADTSPRS--LL---SNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVP  135 (266)
T ss_dssp             HHHHHHHHHHHHHHHHCHHH--HH---HTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhChHH--HH---HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence            44455555555554333321  11   22333444333    67888888888888887431000  0000111 22589


Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhc
Q 005282          239 TLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQR  318 (704)
Q Consensus       239 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~  318 (704)
                      .|+.-+.++.+.+|..+-.++..+....+       ...+.+.++.-+.+.++..+..++..+..+...+...     ..
T Consensus       136 ~LveKlGd~k~~vR~~~r~il~~l~~v~~-------~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~-----~~  203 (266)
T 2of3_A          136 YLLLKTGEAKDNMRTSVRDIVNVLSDVVG-------PLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS-----PL  203 (266)
T ss_dssp             HHHHGGGCSSHHHHHHHHHHHHHHHHHHC-------HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG-----GG
T ss_pred             HHHHHhCCChHHHHHHHHHHHHHHHHHCC-------HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC-----cc
Confidence            99999999999999988888877653211       1235677888889999999999999888876433222     23


Q ss_pred             CCh---HHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 005282          319 GAV---RPLIEMLQSPDSQLKEMSAFALGRLAQ  348 (704)
Q Consensus       319 ~~i---~~L~~ll~~~~~~v~~~a~~~L~~l~~  348 (704)
                      +.+   +.+..++.+.+..||..|..++..+-.
T Consensus       204 ~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~  236 (266)
T 2of3_A          204 KSLSVEKTVAPFVGDKDVNVRNAAINVLVACFK  236 (266)
T ss_dssp             GGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHH
T ss_pred             ccccchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence            468   999999999999999999999986654

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=95.88  E-value=1.1  Score=51.62  Aligned_cols=353  Identities=11%  Similarity=0.073  Sum_probs=176.5

Q ss_pred             CChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-C--Ch-----------hhHHHHHHcCCcHHHHHHHhhccC
Q 005282           92 GAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-V--KP-----------EHQQIIVDTGALPHLVSLLKQYKN  157 (704)
Q Consensus        92 g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~--~~-----------~~~~~~~~~g~l~~L~~lL~~~~~  157 (704)
                      +.++.+++.+..+.           ......+.+|..|. .  +-           ..++.+...  ++.++.++...-.
T Consensus       150 ~fi~dLv~~~~~~~-----------~~~~~~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~--~~~Il~ll~~iL~  216 (1073)
T 3gjx_A          150 TFISDIVGASRTSE-----------SLCQNNMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCNE--FSQIFQLCQFVME  216 (1073)
T ss_dssp             THHHHHHHHHHHCH-----------HHHHHHHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHT--CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCH-----------HHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHH--HHHHHHHHHHHhc
Confidence            45666666665332           45566777777776 2  10           112233332  5556555533211


Q ss_pred             CCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHH-HHHhcCCCHHHHHHHHHHHHHhccCC-chhhHHhHh--
Q 005282          158 GGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPL-VELLKFVDVKVQRAAAGALRTLAFKN-DENKKLIVE--  233 (704)
Q Consensus       158 ~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L-~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~--  233 (704)
                      ...   ..++...++.+|..+...-+  -..+...+.++.+ ..++  +++.++..|+.||..+.... ++....+..  
T Consensus       217 ~~~---~~~lv~~~L~~L~~~~sWI~--i~~i~~~~ll~~L~~~~L--~~~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf  289 (1073)
T 3gjx_A          217 NSQ---NAPLVHATLETLLRFLNWIP--LGYIFETKLISTLIYKFL--NVPMFRNVSLKCLTEIAGVSVSQYEEQFETLF  289 (1073)
T ss_dssp             HCC---CHHHHHHHHHHHHHHTTTSC--THHHHSSSHHHHHHHHTS--SSHHHHHHHHHHHHHHHHSCSGGGHHHHHHHH
T ss_pred             ccC---CHHHHHHHHHHHHHHHHhcC--HHHhccchHHHHHHHHhc--CChHHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence            000   13778888899998875433  2346677777877 4665  46789999999999997532 221222211  


Q ss_pred             cCChHHHHHhh-------------cCCCHHHHHHHHHHHHHHhcCChhhHHHHHHc-C-------CHHHHHHHhcCCChh
Q 005282          234 CNALPTLVLML-------------RSEDASVHFEAVGVIGNLVHSSPSIKKEVILA-G-------ALQPVIGLLSSSCSE  292 (704)
Q Consensus       234 ~~~i~~L~~lL-------------~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~-------~l~~L~~ll~~~~~~  292 (704)
                      .+++..+..++             .+.+.+.....+..+..+...   ....+... +       ++..++.+-..++.+
T Consensus       290 ~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~---~~~lIe~~p~~~~~l~~~l~~ll~~s~~~d~e  366 (1073)
T 3gjx_A          290 TLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKE---HGQLLEKRLNLREALMEALHYMLLVSEVEETE  366 (1073)
T ss_dssp             HHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHH---HHHHHHHCGGGHHHHHHHHHHHHHHTTCSCHH
T ss_pred             HHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHH---HHHHHhcCccchHHHHHHHHHHHHHhCCCcHH
Confidence            01111111111             122345555566666665532   12222221 2       223344444566777


Q ss_pred             HHHHHHHHHHHHhc----cCC-----c------------chHHHHhcCCh----HHHHHhhCCCCH--------------
Q 005282          293 SKREAALLLGQFAA----ADS-----N------------SKVHIVQRGAV----RPLIEMLQSPDS--------------  333 (704)
Q Consensus       293 ~~~~a~~~L~~l~~----~~~-----~------------~~~~~~~~~~i----~~L~~ll~~~~~--------------  333 (704)
                      +...+...-..+..    ..+     .            .+..+. ..++    ..++.-+..++.              
T Consensus       367 i~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y-~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re  445 (1073)
T 3gjx_A          367 IFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLY-LTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVRE  445 (1073)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTT-HHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEE
T ss_pred             HHHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHH-HHHHHHHHHHHHHhcCCCccccccCcccchHHHH
Confidence            76666654333321    111     0            011000 1122    222222221110              


Q ss_pred             --------HHHHHHHHHHHHhhcC-CchhhhHHhhCChHHHHHhhcC--CChhHHHHHHHHHHHcccCCc---hhhHHHh
Q 005282          334 --------QLKEMSAFALGRLAQD-THNQAGIAQDGGILPLLKLLDS--KNGSLQHNAAFALYGLADNED---NVADLVR  399 (704)
Q Consensus       334 --------~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~---~~~~l~~  399 (704)
                              .+....-.+|..++.- ......+    ..+.+-+.+..  .++...+.++++++.+++.-.   ....+. 
T Consensus       446 ~~~d~~~~~ly~~mrd~L~~lt~l~~~~~~~i----~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp-  520 (1073)
T 3gjx_A          446 FMKDTDSINLYKNMRETLVYLTHLDYVDTEII----MTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLV-  520 (1073)
T ss_dssp             ECSSCHHHHHHHHHHHHHHHHHHHCHHHHHHH----HHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHH-
T ss_pred             HHhhcchHHHHHHHHHHHHHHhcCCHHHHHHH----HHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHH-
Confidence                    1111222222222210 1110000    11223333332  357788999999999975211   111121 


Q ss_pred             hCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhc-----cHHHHHHHHHHHHhccCCCccceeeecC
Q 005282          400 VGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVA-----DRAVKRRVTLALAHLCAPDDCKTIFIDN  474 (704)
Q Consensus       400 ~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~-----~~~v~~~a~~~L~~l~~~~~~~~~l~~~  474 (704)
                                                        .+++.|+.+....     ...+....+++++..++.-.....+++ 
T Consensus       521 ----------------------------------~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~-  565 (1073)
T 3gjx_A          521 ----------------------------------TVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLK-  565 (1073)
T ss_dssp             ----------------------------------HHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH-
T ss_pred             ----------------------------------HHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHH-
Confidence                                              2556677776544     234555677899888654322222222 


Q ss_pred             CcHHHHHHHHhhcchhhhhhHHHHHHHHhhhcCC
Q 005282          475 NGLELLLGLLESTSVKQREESSVALYKLATKATS  508 (704)
Q Consensus       475 ~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~~~  508 (704)
                      ..+..|++.+..+++.++.+|+.++..++.++..
T Consensus       566 ~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~  599 (1073)
T 3gjx_A          566 TVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRR  599 (1073)
T ss_dssp             HHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGG
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence            3567777777788999999999999999998863

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=95.87  E-value=0.014  Score=54.71  Aligned_cols=175  Identities=18%  Similarity=0.140  Sum_probs=117.6

Q ss_pred             hhhHHHHHHHHH-----HHHHhhc--ChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChh
Q 005282           62 ETDRAAAKTASH-----ALVEFAK--NEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPE  134 (704)
Q Consensus        62 ~~~~~~~~~a~~-----~L~~l~~--~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~  134 (704)
                      +.+..++..++.     .|..+..  ++.++......-..+.|..++.+++.          .||..++..+   .    
T Consensus        61 d~~~~VR~~AA~~l~~~~l~~L~~D~~~~VR~~aA~~L~~~~L~~ll~D~d~----------~VR~~aA~~l---~----  123 (244)
T 1lrv_A           61 DPFWERRAIAVRYSPVEALTPLIRDSDEVVRRAVAYRLPREQLSALMFDEDR----------EVRITVADRL---P----  123 (244)
T ss_dssp             CSSHHHHHHHHTTSCGGGGGGGTTCSSHHHHHHHHTTSCSGGGGGTTTCSCH----------HHHHHHHHHS---C----
T ss_pred             CCCHHHHHHHHHhCCHHHHHHHccCcCHHHHHHHHHHCCHHHHHHHHcCCCH----------HHHHHHHHhC---C----
Confidence            344667777774     3444544  46777777776556777888887754          8998888743   1    


Q ss_pred             hHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHH
Q 005282          135 HQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAA  214 (704)
Q Consensus       135 ~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~  214 (704)
                                .+.+..++++++        +.++..++..   +.               .+.+..+++++++.|+..++
T Consensus       124 ----------~~~L~~L~~D~d--------~~VR~~aA~~---l~---------------~~~l~~l~~D~d~~VR~~aa  167 (244)
T 1lrv_A          124 ----------LEQLEQMAADRD--------YLVRAYVVQR---IP---------------PGRLFRFMRDEDRQVRKLVA  167 (244)
T ss_dssp             ----------TGGGGGGTTCSS--------HHHHHHHHHH---SC---------------GGGGGGTTTCSCHHHHHHHH
T ss_pred             ----------HHHHHHHHcCCC--------HHHHHHHHHh---cC---------------HHHHHHHHcCCCHHHHHHHH
Confidence                      123444444443        3888877762   11               12455677789999999888


Q ss_pred             HHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHH
Q 005282          215 GALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESK  294 (704)
Q Consensus       215 ~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~  294 (704)
                      ..   +.               .+.+..+++++++.||..++..+                  ..+.|..++.++++.++
T Consensus       168 ~~---l~---------------~~ll~~ll~D~d~~VR~aaa~~l------------------~~~~L~~Ll~D~d~~VR  211 (244)
T 1lrv_A          168 KR---LP---------------EESLGLMTQDPEPEVRRIVASRL------------------RGDDLLELLHDPDWTVR  211 (244)
T ss_dssp             HH---SC---------------GGGGGGSTTCSSHHHHHHHHHHC------------------CGGGGGGGGGCSSHHHH
T ss_pred             Hc---CC---------------HHHHHHHHcCCCHHHHHHHHHhC------------------CHHHHHHHHcCCCHHHH
Confidence            75   21               13455678899999999988753                  13567778899999999


Q ss_pred             HHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHH
Q 005282          295 REAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALG  344 (704)
Q Consensus       295 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~  344 (704)
                      ..++..+.                  .+.|..+ ++++..|+..+...|+
T Consensus       212 ~~aa~~l~------------------~~~L~~L-~D~~~~VR~aa~~~L~  242 (244)
T 1lrv_A          212 LAAVEHAS------------------LEALREL-DEPDPEVRLAIAGRLG  242 (244)
T ss_dssp             HHHHHHSC------------------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred             HHHHHcCC------------------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence            98887743                  2455555 8889999988876543

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=95.67  E-value=0.11  Score=47.44  Aligned_cols=144  Identities=15%  Similarity=0.080  Sum_probs=103.1

Q ss_pred             hHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHH-HhcCCChhHHHHHHHHHHHHhc-cCCcchHH
Q 005282          237 LPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIG-LLSSSCSESKREAALLLGQFAA-ADSNSKVH  314 (704)
Q Consensus       237 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~-ll~~~~~~~~~~a~~~L~~l~~-~~~~~~~~  314 (704)
                      ++....+.+++..++|..|+.+|+.+ ...         ...++.+.. +..+++..++..++.++..++. .+++.   
T Consensus        73 ~~la~~L~~~~~deVR~~Av~lLg~~-~~~---------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~---  139 (240)
T 3l9t_A           73 KKLAFLAYQSDVYQVRMYAVFLFGYL-SKD---------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK---  139 (240)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHT-TTS---------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT---
T ss_pred             HHHHHHHHhCcchHHHHHHHHHHHhc-cCc---------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH---
Confidence            45566677788889999999999887 321         124566666 5567889999999999999884 34432   


Q ss_pred             HHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHccc-CCch
Q 005282          315 IVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLAD-NEDN  393 (704)
Q Consensus       315 ~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~  393 (704)
                           .++.+..+.++++..+|..|...+.-.+..+..  ..--.-.++.+-.+..+++.-||+.+++.|..++. +|+-
T Consensus       140 -----~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~--k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~  212 (240)
T 3l9t_A          140 -----ALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYF--KENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDL  212 (240)
T ss_dssp             -----THHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTT--TTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred             -----HHHHHHHHhcCCCHHHHHHHHHhhHHHhccchh--hcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHH
Confidence                 578889999999999999998887543432111  00001123444456677888999999999999996 7887


Q ss_pred             hhHHHhh
Q 005282          394 VADLVRV  400 (704)
Q Consensus       394 ~~~l~~~  400 (704)
                      ...+++.
T Consensus       213 V~~~~~~  219 (240)
T 3l9t_A          213 VKIELKN  219 (240)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHH
Confidence            7777774

>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2

Probab=95.67  E-value=0.0048  Score=50.02  Aligned_cols=96  Identities=11%  Similarity=0.144  Sum_probs=69.4

Q ss_pred             cEEEEEcCeEeehhHHHHhhcC-HHHHHhhcCCCC-CCCCCceEcCCCCHHHHHHHHHHHhcCccccChh-hHHHHHHHH
Q 005282          537 DVTFVVEGKQFYAHRICLLASS-DAFRAMFDGGYK-EKNAKDVEIPNIRWNVFELMMRFIYTGNVDVSVD-IAQDLLRAA  613 (704)
Q Consensus       537 d~~~~~~~~~~~~hk~iL~~~s-~~f~~~f~~~~~-e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~-~~~~ll~~A  613 (704)
                      -|.+-|||..|...+..|.... .++.+||.+... ....+.+-+ |=++..|..+|.|+-+|++.++.+ ....+++-|
T Consensus         6 ~V~LNVGG~~f~T~~~TL~~~P~s~L~~l~~~~~~~~~~~g~~Fi-DRdp~~F~~ILnylR~G~l~~p~~~~~~~~~~Ea   84 (115)
T 3kvt_A            6 RVIINVGGIRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFF-DRHPGVFAQIINYYRSGKLHYPTDVCGPLFEEEL   84 (115)
T ss_dssp             EEEEEETTEEEEEEHHHHTTSCSSTTTTCCTTSTTEETTTTEEEE-CSCTTTHHHHHHHHHHSCBCCCSSSCHHHHHHHH
T ss_pred             EEEEEECCEEEEecHHHHhcCCCccHHHHhcCCCCCCCCCCcEEE-ecChHHHHHHHHHhcCCCCCCCCcccHHHHHHHH
Confidence            4788899999999999998663 456667764321 123345554 568899999999999999887654 468899999


Q ss_pred             hhhChHhHH--HHHHHHHHhhC
Q 005282          614 DQYLLEGLK--RLCEYSIAQII  633 (704)
Q Consensus       614 ~~~~~~~l~--~~c~~~l~~~~  633 (704)
                      .+|+++...  ..|...+.+..
T Consensus        85 ~fy~i~~~~l~~CC~~~~~~~~  106 (115)
T 3kvt_A           85 EFWGLDSNQVEPCCWMTYTAHR  106 (115)
T ss_dssp             HHHTCCGGGBCGGGSHHHHSCC
T ss_pred             HHhCCChHHHHHHHHHHHHhcc
Confidence            999998643  34655554433

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=95.35  E-value=0.72  Score=54.60  Aligned_cols=260  Identities=13%  Similarity=0.087  Sum_probs=135.7

Q ss_pred             chhhHHHHHHHHHHHHHhhc------ChhHHHHHHhCCChHHHHhhccCC-CcCCCCCCCCchHHHHHHHHHHHhhc--C
Q 005282           61 DETDRAAAKTASHALVEFAK------NEEIVSLIVDNGAVPALVEHLQTP-PQLTNAQIPYEHEVEKECAFALGLLA--V  131 (704)
Q Consensus        61 ~~~~~~~~~~a~~~L~~l~~------~~~~~~~l~~~g~i~~L~~lL~~~-~~~~~~~~~~d~~v~~~a~~~L~~l~--~  131 (704)
                      .+.+..++..|+..|.+...      .++.+. .++..++..+...-... ..        +..++...+.++..++  +
T Consensus        57 ~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~-~Ir~~ll~~l~~~~~~~~~~--------~~~vr~kla~~la~Ia~~d  127 (1204)
T 3a6p_A           57 KTQVAIVRHFGLQILEHVVKFRWNGMSRLEKV-YLKNSVMELIANGTLNILEE--------ENHIKDALSRIVVEMIKRE  127 (1204)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHH-HHHHHHHHHHHHSSCCTTSS--------CHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHHHhcccCCHHHHH-HHHHHHHHHHHhhccccccc--------cHHHHHHHHHHHHHHHHHh
Confidence            34455678888888887643      233333 33444444444332111 01        2479999999999998  3


Q ss_pred             ChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChh------hhh-----hhhcc--CCcHHH
Q 005282          132 KPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENAN------IKT-----RVRVE--DGIPPL  198 (704)
Q Consensus       132 ~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~------~~~-----~~~~~--~~i~~L  198 (704)
                      .|+.-     .+.++.|++++.+..         ..++.++.+|..++.+...      .+.     .+...  .+++.+
T Consensus       128 ~p~~W-----p~ll~~L~~~~~~~~---------~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~  193 (1204)
T 3a6p_A          128 WPQHW-----PDMLIELDTLSKQGE---------TQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFL  193 (1204)
T ss_dssp             STTTC-----TTHHHHHHHHHHTCH---------HHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHH
T ss_pred             Ccccc-----hHHHHHHHHHhcCCH---------HHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33210     245677777776521         5577788888888743111      111     11111  112223


Q ss_pred             HHHhcC-------------------CCHHHHHHHHHHHHHhccCCchhhHHhHhcC--ChHHHHHhhcCCCHHHHHHHHH
Q 005282          199 VELLKF-------------------VDVKVQRAAAGALRTLAFKNDENKKLIVECN--ALPTLVLMLRSEDASVHFEAVG  257 (704)
Q Consensus       199 ~~ll~~-------------------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~--~i~~L~~lL~~~~~~v~~~a~~  257 (704)
                      ..+++.                   .+..+...++.++.+...--+  ...+.+..  .++.+..++.  ++.++..|+.
T Consensus       194 ~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~--~~~i~~~~~~ll~~l~~~l~--~~~lr~~A~e  269 (1204)
T 3a6p_A          194 LNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVS--MSHITAENCKLLEILCLLLN--EQELQLGAAE  269 (1204)
T ss_dssp             HHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSC--HHHHHTTTSHHHHHHHHGGG--CTTTHHHHHH
T ss_pred             HHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccC--HHHHHhccchHHHHHHHHcC--CHHHHHHHHH
Confidence            333322                   123466677777766543111  12222322  5677776664  5788999999


Q ss_pred             HHHHHhcCCh--hhHHHHHH---cCCHHHHHHHhc--C------CChhHHHHHHHHHHHHhccCCcchHHHH--------
Q 005282          258 VIGNLVHSSP--SIKKEVIL---AGALQPVIGLLS--S------SCSESKREAALLLGQFAAADSNSKVHIV--------  316 (704)
Q Consensus       258 ~L~~l~~~~~--~~~~~~~~---~~~l~~L~~ll~--~------~~~~~~~~a~~~L~~l~~~~~~~~~~~~--------  316 (704)
                      +|..+.....  .....++.   ..++..++..+.  +      .+.+..+..+..+..+...   ....+.        
T Consensus       270 cL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~~---l~~l~~~~~~~~~~  346 (1204)
T 3a6p_A          270 CLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQ---LCALLGADSDVETP  346 (1204)
T ss_dssp             HHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHH---HHHHHHTCSSCCCC
T ss_pred             HHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHH---HHHHHhccccccCh
Confidence            9999996532  21111111   011234444432  1      1234455555555555410   111000        


Q ss_pred             --hcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC
Q 005282          317 --QRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDT  350 (704)
Q Consensus       317 --~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  350 (704)
                        -.++++.++.+..+++..+...++.....+....
T Consensus       347 ~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~  382 (1204)
T 3a6p_A          347 SNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHE  382 (1204)
T ss_dssp             TTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCT
T ss_pred             hHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhcc
Confidence              0245777888888888888777777666566553

>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2

Probab=95.27  E-value=0.038  Score=45.39  Aligned_cols=91  Identities=15%  Similarity=0.188  Sum_probs=65.4

Q ss_pred             ccEEEEEcCeEeehhHHHHhhcCHHHHHhhcCC----CCCCCCCceEcCCCCHHHHHHHHHHHhcCccccChh-hHHHHH
Q 005282          536 SDVTFVVEGKQFYAHRICLLASSDAFRAMFDGG----YKEKNAKDVEIPNIRWNVFELMMRFIYTGNVDVSVD-IAQDLL  610 (704)
Q Consensus       536 ~d~~~~~~~~~~~~hk~iL~~~s~~f~~~f~~~----~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~-~~~~ll  610 (704)
                      .-|.+-|||..|...+..|...-.   ++|...    +.....+.+-+ |=++..|..+|.|+-+|++.++.+ .+..++
T Consensus        13 ~~V~LNVGG~~F~t~~~TL~~~p~---S~L~~~~~~~~~~~~~g~~Fi-DRdp~~F~~ILnflR~G~l~~p~~~~~~~l~   88 (124)
T 1s1g_A           13 ELIVLNVSGRRFQTWRTTLERYPD---TLLGSTEKEFFFNEDTKEYFF-DRDPEVFRCVLNFYRTGKLHYPRYECISAYD   88 (124)
T ss_dssp             CEEEEEETTEEEEEEHHHHTTSTT---SSTTSSGGGGTBCSSSCSEEE-CSCHHHHHHHHHHHHHSCBCCCTTSCHHHHH
T ss_pred             CEEEEEeCCEEEEEeHHHHhcCCC---ceecccCCcccccCCCCcEEE-cCChHHHHHHHHHHhcCCCCCCCCcCHHHHH
Confidence            457888999999999999975432   233221    11122345554 569999999999999999987655 478999


Q ss_pred             HHHhhhChHhH--HHHHHHHHH
Q 005282          611 RAADQYLLEGL--KRLCEYSIA  630 (704)
Q Consensus       611 ~~A~~~~~~~l--~~~c~~~l~  630 (704)
                      +-|++|+++.+  ...|.....
T Consensus        89 ~Ea~fy~i~~l~l~~cC~~~~~  110 (124)
T 1s1g_A           89 DELAFYGILPEIIGDCCYEEYK  110 (124)
T ss_dssp             HHHHHTTCCGGGBCHHHHHHHH
T ss_pred             HHHHHcCCChHHHHHHHHHHHH
Confidence            99999999986  355555543

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=95.02  E-value=2.1  Score=41.40  Aligned_cols=193  Identities=12%  Similarity=0.072  Sum_probs=111.3

Q ss_pred             hHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHH
Q 005282           94 VPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAAD  173 (704)
Q Consensus        94 i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~  173 (704)
                      +..+..+++-+.           +.+--++-+++-++-+|.....+.+.+.-..++..+...-.+..   .+..+..+++
T Consensus       105 l~~l~kil~WP~-----------~~~fPvLDLlRl~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~---~p~n~ml~lR  170 (304)
T 3ebb_A          105 LQILWKAINCPE-----------DIVFPALDILRLSIKHPSVNENFCNEKEGAQFSSHLINLLNPKG---KPANQLLALR  170 (304)
T ss_dssp             HHHHHHHHTSCT-----------TTCHHHHHHHHHHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTTS---CHHHHHHHHH
T ss_pred             HHHHHHHHcCCH-----------HhHHHHHHHHHHHHcCccHHHHhhccccchHHHHHHHHhcCCCC---ChHHHHHHHH
Confidence            456666664333           45666777777777777776666554443445533322211111   1256889999


Q ss_pred             HHHHhhhcChhhhhhhhcc--CCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhc-CCCHH
Q 005282          174 AITNLAHENANIKTRVRVE--DGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLR-SEDAS  250 (704)
Q Consensus       174 ~L~~l~~~~~~~~~~~~~~--~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~  250 (704)
                      +++|+.. ++..+..+...  .+++.+...+.+.+..++..+...+.|++......+..-.....+..+..+++ ..+.+
T Consensus       171 ~l~NlF~-~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~E  249 (304)
T 3ebb_A          171 TFCNCFV-GQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLE  249 (304)
T ss_dssp             HHHHGGG-SHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHH
T ss_pred             HHHHccC-CchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHH
Confidence            9999986 55566655432  23444555555678999999999999997521111100001113444555554 45889


Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHH
Q 005282          251 VHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLL  301 (704)
Q Consensus       251 v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L  301 (704)
                      ....++.+|+++...+.+..+.....|+-..+-++.....+.-...++..+
T Consensus       250 alyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~  300 (304)
T 3ebb_A          250 ATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFI  300 (304)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHH
Confidence            999999999999977555444333444444444555443333344444444

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=94.88  E-value=0.23  Score=45.33  Aligned_cols=133  Identities=17%  Similarity=0.146  Sum_probs=90.7

Q ss_pred             hHHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhh-cChhhhhhhhccCC
Q 005282          116 HEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAH-ENANIKTRVRVEDG  194 (704)
Q Consensus       116 ~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~~~~  194 (704)
                      .++|..|+.+|+.+ . + .      ...++.+...+....       .+.+++.+..++..++. ..++        ..
T Consensus        85 deVR~~Av~lLg~~-~-~-~------~~~L~~ir~~va~D~-------~WrVre~lA~a~~~~~~~~~pe--------~~  140 (240)
T 3l9t_A           85 YQVRMYAVFLFGYL-S-K-D------KEILIFMRDEVSKDN-------NWRVQEVLAKAFDEFCKKIEYK--------KA  140 (240)
T ss_dssp             HHHHHHHHHHHHHT-T-T-S------HHHHHHHHHTGGGCS-------CHHHHHHHHHHHHHHHHHHCTT--------TT
T ss_pred             hHHHHHHHHHHHhc-c-C-c------HHHHHHHHHHhCCCC-------CccHHHHHHHHHHHHHHhcCHH--------HH
Confidence            39999999998887 2 1 1      112233333233222       27999999999999985 4443        25


Q ss_pred             cHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHH
Q 005282          195 IPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVI  274 (704)
Q Consensus       195 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  274 (704)
                      ++.+...+.+++..+|+.|+..+.--+. .+..+.  .-.-+++.|-.+..+++.-|+....+.|..++..+|+....++
T Consensus       141 l~~~~~W~~d~n~~VRR~Ase~~rpW~~-~~~~k~--dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V~~~~  217 (240)
T 3l9t_A          141 LPIIDEWLKSSNLHTRRAATEGLRIWTN-RPYFKE--NPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLVKIEL  217 (240)
T ss_dssp             HHHHHHHHHCSSHHHHHHHHHHTCSGGG-STTTTT--CHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHhhHHHhc-cchhhc--CHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHHHHHH
Confidence            6788899999999999999988765332 111110  0011356666667788999999999999999999888666555


Q ss_pred             H
Q 005282          275 L  275 (704)
Q Consensus       275 ~  275 (704)
                      +
T Consensus       218 ~  218 (240)
T 3l9t_A          218 K  218 (240)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=94.68  E-value=3.9  Score=41.54  Aligned_cols=161  Identities=16%  Similarity=0.110  Sum_probs=103.6

Q ss_pred             HHHHHHHHHHHHHhhcC-hhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHcC
Q 005282           65 RAAAKTASHALVEFAKN-EEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTG  143 (704)
Q Consensus        65 ~~~~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g  143 (704)
                      ....+-|+..+...... |+..+..     +..++.++++.+.          .||.+|++.|..+|.+ ++...+.   
T Consensus        42 ~k~K~LaaQ~I~kffk~FP~l~~~A-----i~a~lDLcEDed~----------~IR~qaik~Lp~~ck~-~~i~kia---  102 (507)
T 3u0r_A           42 TKEKRLAAQFIPKFFKHFPELADSA-----INAQLDLCEDEDV----------SIRRQAIKELPQFATG-ENLPRVA---  102 (507)
T ss_dssp             HHHHHHHHHHHHHHGGGCGGGHHHH-----HHHHHHHHTCSSH----------HHHHHHHHHGGGGCCT-TCHHHHH---
T ss_pred             HHHHHHHHHHHHHHHhhChhhHHHH-----HHHHHHHHhcccH----------HHHHHHHHhhHHHhhh-hhhhhHH---
Confidence            34566677777777764 7776654     8999999999865          8999999999999955 5544444   


Q ss_pred             CcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccC
Q 005282          144 ALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFK  223 (704)
Q Consensus       144 ~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~  223 (704)
                        ..|.++|...+.        .-+...-.+|..+...++.        +.+..+...+..+++.+|+.++..|..-...
T Consensus       103 --DvL~QlLqtdd~--------~E~~~V~~sL~sllk~Dpk--------~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~  164 (507)
T 3u0r_A          103 --DILTQLLQTDDS--------AEFNLVNNALLSIFKMDAK--------GTLGGLFSQILQGEDIVRERAIKFLSTKLKT  164 (507)
T ss_dssp             --HHHHHHTTCCCH--------HHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHHHSCHHHHHHHHHHHHHHGGG
T ss_pred             --HHHHHHHhccch--------HHHHHHHHHHHHHHhcChH--------HHHHHHHHHHcccchHHHHHHHHHHHHHHhh
Confidence              688899986553        4455555666666654443        3455566666667889999988888665431


Q ss_pred             C-chhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHH
Q 005282          224 N-DENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNL  262 (704)
Q Consensus       224 ~-~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l  262 (704)
                      - ++....-.+.-++..+.+.|.+-...--.....+|..+
T Consensus       165 l~~~~l~~E~E~~i~~~ikK~L~DVT~~EF~L~m~lL~~l  204 (507)
T 3u0r_A          165 LPDEVLTKEVEELILTESKKVLEDVTGEEFVLFMKILSGL  204 (507)
T ss_dssp             SCTTTSCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHTS
T ss_pred             cchhhccHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhc
Confidence            1 11111112222455566667665555545555555444

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=94.64  E-value=0.71  Score=44.26  Aligned_cols=135  Identities=17%  Similarity=0.232  Sum_probs=99.3

Q ss_pred             HHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhc-
Q 005282          167 VIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLR-  245 (704)
Q Consensus       167 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~-  245 (704)
                      +...+...|.-+. ++...-+-+++.+|+..+....+-++.++.++.+..|...+. ..... ..--.+.+|.++..++ 
T Consensus       259 VvtR~FDLL~LLm-HdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSD-aksL~-~t~L~e~LPFi~~~i~~  335 (619)
T 3c2g_A          259 VIIRTFDLLGLLL-HDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSD-AKALA-KTPLENILPFLLRLIEI  335 (619)
T ss_dssp             HHHHHHHHHHHHC-CSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTT-CGGGG-TSCCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh-cccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecc-hHHHh-hccccccchHHHHHhcc
Confidence            3344444454444 466677789999999999999999999999999999999984 22211 1112346888888887 


Q ss_pred             CCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCC-------ChhHHHHHHHHHHHH
Q 005282          246 SEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSS-------CSESKREAALLLGQF  304 (704)
Q Consensus       246 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~-------~~~~~~~a~~~L~~l  304 (704)
                      ++++++.......|.|...+....++..+..|++..|-..+...       +...+..+|..++|.
T Consensus       336 h~eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~  401 (619)
T 3c2g_A          336 HPDDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNC  401 (619)
T ss_dssp             CCCHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHH
T ss_pred             CCCcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHH
Confidence            88999999999999999988877888888899999888777432       223355555555543

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=94.58  E-value=0.66  Score=44.47  Aligned_cols=136  Identities=19%  Similarity=0.257  Sum_probs=101.8

Q ss_pred             HHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHH
Q 005282          118 VEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPP  197 (704)
Q Consensus       118 v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~  197 (704)
                      |...+...|+-+-.+++.-+.+++.+++..+...+..++.        ++.+.++..|...+....  -...--...+|.
T Consensus       259 VvtR~FDLL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~--------~l~RaG~KLLLQVSDaks--L~~t~L~e~LPF  328 (619)
T 3c2g_A          259 VIIRTFDLLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNN--------DLIRAGCKLLLQVSDAKA--LAKTPLENILPF  328 (619)
T ss_dssp             HHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCH--------HHHHHHHHHHHHHTTCGG--GGTSCCTTHHHH
T ss_pred             HHHHHHHHHHHHhcccccccceeecccceeEEEEeecCCc--------HHHHhhhheeeeecchHH--HhhccccccchH
Confidence            3344555555555788888899999999999999988876        999999999998874221  112223456788


Q ss_pred             HHHHhc-CCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcC-------CCHHHHHHHHHHHHHHh
Q 005282          198 LVELLK-FVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRS-------EDASVHFEAVGVIGNLV  263 (704)
Q Consensus       198 L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~-------~~~~v~~~a~~~L~~l~  263 (704)
                      ++..++ +++.++.....+.|.|...+....++..+..|.++.|.+.+..       .+..-+..+|.+++|..
T Consensus       329 i~~~i~~h~eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~L  402 (619)
T 3c2g_A          329 LLRLIEIHPDDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCL  402 (619)
T ss_dssp             HHHHHHHCCCHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHH
T ss_pred             HHHHhccCCCcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHH
Confidence            888887 7899999999999999998777888888899999999887652       23445556666666544

>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A

Probab=94.56  E-value=0.051  Score=45.64  Aligned_cols=92  Identities=15%  Similarity=0.171  Sum_probs=65.4

Q ss_pred             cccEEEEEcCeEeehhHHHHhhcCHHHHHhhcCC----CCCCCCCceEcCCCCHHHHHHHHHHHhcCccccChh-hHHHH
Q 005282          535 LSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGG----YKEKNAKDVEIPNIRWNVFELMMRFIYTGNVDVSVD-IAQDL  609 (704)
Q Consensus       535 ~~d~~~~~~~~~~~~hk~iL~~~s~~f~~~f~~~----~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~-~~~~l  609 (704)
                      ..-|.+-|||..|...+..|...-.   ++|...    ......+.+-+ |=++..|..+|.|+-+|++.++.+ .+..+
T Consensus        34 ~~~V~LNVGG~~F~T~~~TL~~~P~---S~L~~~~~~~~~~~~~g~yFi-DRdp~~F~~ILnflR~G~l~~p~~~~~~~l  109 (140)
T 2nz0_B           34 DELIVLNVSGRRFQTWRTTLERYPD---TLLGSTEKEFFFNEDTKEYFF-DRDPEVFRCVLNFYRTGKLHYPRYECISAY  109 (140)
T ss_dssp             CCEEEEEETTEEEEEEHHHHHTCTT---STTTSGGGGGSEETTTTEEEE-CSCHHHHHHHHHHHHHSSBCCCTTSCHHHH
T ss_pred             CCEEEEEECCEEEEeeHHHHhcCCC---eeecccCCcccccCCCCeEEE-eCCcHHHHHHHHHHhcCCcCCCCCcCHHHH
Confidence            3558888999999999999985432   233321    11122344554 569999999999999999887654 47889


Q ss_pred             HHHHhhhChHhH--HHHHHHHHH
Q 005282          610 LRAADQYLLEGL--KRLCEYSIA  630 (704)
Q Consensus       610 l~~A~~~~~~~l--~~~c~~~l~  630 (704)
                      ++-|++|+++.+  ...|.....
T Consensus       110 ~eEa~fy~i~~l~l~~CC~~~~~  132 (140)
T 2nz0_B          110 DDELAFYGILPEIIGDCCYEEYK  132 (140)
T ss_dssp             HHHHHHHTCCGGGBCTTTHHHHH
T ss_pred             HHHHHHcCCChHHHHHHHHHHHH
Confidence            999999999886  334555443

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=94.25  E-value=1.2  Score=43.22  Aligned_cols=174  Identities=15%  Similarity=0.086  Sum_probs=100.4

Q ss_pred             cHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChH----HHHHhhc-CCCHHHHHHHHHHHHHHhcCChhh
Q 005282          195 IPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALP----TLVLMLR-SEDASVHFEAVGVIGNLVHSSPSI  269 (704)
Q Consensus       195 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~----~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~  269 (704)
                      +..+.+++.-+ .+.+..++..++-++. ++.....+.+.+.-.    .+...+. ...+..+..++++++|+..+ +..
T Consensus       105 l~~l~kil~WP-~~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~-~~g  181 (304)
T 3ebb_A          105 LQILWKAINCP-EDIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVG-QAG  181 (304)
T ss_dssp             HHHHHHHHTSC-TTTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGS-HHH
T ss_pred             HHHHHHHHcCC-HHhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCC-chh
Confidence            34555555322 2455566666666664 454444444332222    2333333 23567789999999999976 555


Q ss_pred             HHHHHH--cCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhC-CCCHHHHHHHHHHHHHh
Q 005282          270 KKEVIL--AGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQ-SPDSQLKEMSAFALGRL  346 (704)
Q Consensus       270 ~~~~~~--~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l  346 (704)
                      ++.+..  ..+++.+...+.+.+..++..++..+.|++.........-....++..+..++. ..+.+....++-+|+++
T Consensus       182 ~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL  261 (304)
T 3ebb_A          182 QKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTL  261 (304)
T ss_dssp             HHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence            555443  234455555555667788888898999987531110000001113445555554 36889999999999999


Q ss_pred             hcCCchhhhHHhhCChHHHH-HhhcC
Q 005282          347 AQDTHNQAGIAQDGGILPLL-KLLDS  371 (704)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~L~-~ll~~  371 (704)
                      ...+.....+.+.-++...+ +....
T Consensus       262 ~~~~~~~~~lak~l~~~~~v~~~~~~  287 (304)
T 3ebb_A          262 ISDDSNAVQLAKSLGVDSQIKKYSSV  287 (304)
T ss_dssp             HTTCHHHHHHHHHTTHHHHGGGGGGC
T ss_pred             HhCChhHHHHHHHcCHHHHHHHHHhC
Confidence            98765555555554444444 34433

>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2

Probab=94.17  E-value=0.036  Score=44.12  Aligned_cols=89  Identities=12%  Similarity=0.142  Sum_probs=62.9

Q ss_pred             EEEEEcCeEeehhHHHHhhcCHHHHHhhcCCC----CCCCCCceEcCCCCHHHHHHHHHHHhcCccccChh-hHHHHHHH
Q 005282          538 VTFVVEGKQFYAHRICLLASSDAFRAMFDGGY----KEKNAKDVEIPNIRWNVFELMMRFIYTGNVDVSVD-IAQDLLRA  612 (704)
Q Consensus       538 ~~~~~~~~~~~~hk~iL~~~s~~f~~~f~~~~----~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~-~~~~ll~~  612 (704)
                      |.+-|||+.|...+..|.....   ++|....    .....+.+-+ |=++..|..+|.|+-+|++.++.+ .+..+++-
T Consensus         2 V~LNVGG~~f~t~~~TL~~~p~---s~L~~~~~~~~~~~~~~~~Fi-DRdp~~F~~ILnflR~g~l~~p~~~~~~~l~~E   77 (105)
T 1nn7_A            2 IVLNVSGTRFQTWQDTLERYPD---TLLGSSERDFFYHPETQQYFF-DRDPDIFRHILNFYRTGKLHYPRHECISAYDEE   77 (105)
T ss_dssp             EEEEETTEEEEECHHHHHTSCS---SSTTSGGGGGGEEGGGTEEEE-CSCTTTHHHHHHHHHHSCBCCCTTSCHHHHHHH
T ss_pred             EEEEECCEEEEEeHHHHhcCCC---ccccccCCcccccCCCCcEEE-eCCcHHHHHHHHHHhcCCCCCCCCcCHHHHHHH
Confidence            6788999999999999975432   2332210    1112334444 458999999999999999887654 47889999


Q ss_pred             HhhhChHhH--HHHHHHHHH
Q 005282          613 ADQYLLEGL--KRLCEYSIA  630 (704)
Q Consensus       613 A~~~~~~~l--~~~c~~~l~  630 (704)
                      |++|+++.+  ...|.....
T Consensus        78 a~fy~i~~l~~~~cc~~~~~   97 (105)
T 1nn7_A           78 LAFFGLIPEIIGDCCYEEYK   97 (105)
T ss_dssp             HHHHTCCSCCBCHHHHHHHH
T ss_pred             HHHcCCCHHHHHHHHHHHHH
Confidence            999999876  345555443

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=93.88  E-value=3.4  Score=38.28  Aligned_cols=162  Identities=17%  Similarity=0.213  Sum_probs=102.6

Q ss_pred             CChhhHHHHHHcCCcHHHHHHHhhccCCCCC---cchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCH
Q 005282          131 VKPEHQQIIVDTGALPHLVSLLKQYKNGGNS---RALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDV  207 (704)
Q Consensus       131 ~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~---~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~  207 (704)
                      ...++.+.+ ..+|+..|+..|.........   ..+.+....++.+|..+..........+...+.+..|...+.++++
T Consensus        32 ~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~  110 (233)
T 2f31_A           32 NPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVP  110 (233)
T ss_dssp             SCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSH
T ss_pred             CCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCc
Confidence            455677777 578899999999775432211   1134778889999999985444444555556778999999999999


Q ss_pred             HHHHHHHHHHHHhccCCc-hh-hHHhH----------hcCChHHHHHhhc-CCCHHHHHHHHHHHHHHhcCChhh-----
Q 005282          208 KVQRAAAGALRTLAFKND-EN-KKLIV----------ECNALPTLVLMLR-SEDASVHFEAVGVIGNLVHSSPSI-----  269 (704)
Q Consensus       208 ~~~~~a~~~L~~l~~~~~-~~-~~~~~----------~~~~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~-----  269 (704)
                      .++..++..|..+|.... .. ...+.          +..-...++..+. +.+.+.+..++..+..+....+..     
T Consensus       111 ~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~  190 (233)
T 2f31_A          111 NMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVH  190 (233)
T ss_dssp             HHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHH
Confidence            999999999988886332 23 32222          2234666777776 455677777777777776554432     


Q ss_pred             -HHHHHHcCCHHHHHHHhcCCChhH
Q 005282          270 -KKEVILAGALQPVIGLLSSSCSES  293 (704)
Q Consensus       270 -~~~~~~~~~l~~L~~ll~~~~~~~  293 (704)
                       +..+...|..+.+-.+=...++++
T Consensus       191 lR~ef~~~Gl~~il~~l~~~~~~~L  215 (233)
T 2f31_A          191 IRSELMRLGLHQVLQELREIENEDM  215 (233)
T ss_dssp             HHHHHHHTTHHHHHHHHHHCCCHHH
T ss_pred             HHHHHHHCChHHHHHHHhccCCHHH
Confidence             233344454444443333344444

>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A

Probab=93.70  E-value=0.067  Score=41.97  Aligned_cols=84  Identities=14%  Similarity=0.130  Sum_probs=60.3

Q ss_pred             EEEEEcCeEeehhHHHHhhcC-HHHHHhhcCC-CCCCCCCceEcCCCCHHHHHHHHHHHhc-CccccChh-hHHHHHHHH
Q 005282          538 VTFVVEGKQFYAHRICLLASS-DAFRAMFDGG-YKEKNAKDVEIPNIRWNVFELMMRFIYT-GNVDVSVD-IAQDLLRAA  613 (704)
Q Consensus       538 ~~~~~~~~~~~~hk~iL~~~s-~~f~~~f~~~-~~e~~~~~i~l~~~~~~~~~~~l~~~Y~-~~~~~~~~-~~~~ll~~A  613 (704)
                      |.+-|||..|...+..|...- ..+.+|+... .-.....++-+ |=++..|+.+|.|+-+ |++..+.+ .+..+++-|
T Consensus         3 v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~~eyFi-DRdp~~F~~ILnflR~~G~l~~p~~~~~~~~~~Ea   81 (100)
T 1t1d_A            3 VVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFF-DRNRPSFDAILYFYQSGGRLRRPVNVPLDVFSEEI   81 (100)
T ss_dssp             EEEEETTEEEEEEHHHHHTSTTSTTTCHHHHGGGEETTTTEEEE-CSCSTTHHHHHHHHHTTSCCCCCTTSCHHHHHHHH
T ss_pred             EEEEECCEEEEeeHHHHhcCCCccccchhccccccCCCceeEEE-cCChHHHHHHHHHHhcCCcccCCCCCCHHHHHHHH
Confidence            678899999999999996542 2344444321 11123345555 5688999999999998 88876544 478899999


Q ss_pred             hhhChHhHH
Q 005282          614 DQYLLEGLK  622 (704)
Q Consensus       614 ~~~~~~~l~  622 (704)
                      ++|+++.+.
T Consensus        82 ~fy~i~~~~   90 (100)
T 1t1d_A           82 KFYELGENA   90 (100)
T ss_dssp             HHTTCCHHH
T ss_pred             HHcCCCHHH
Confidence            999998754

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=93.51  E-value=4.5  Score=46.66  Aligned_cols=100  Identities=9%  Similarity=0.123  Sum_probs=62.5

Q ss_pred             CChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCC---C--HHHHHHHHHHHHHhhcCCchhhhHHhhCChH
Q 005282          289 SCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSP---D--SQLKEMSAFALGRLAQDTHNQAGIAQDGGIL  363 (704)
Q Consensus       289 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~---~--~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~  363 (704)
                      .++.....++|+++.++..-.+....-.-..+++.|+.+....   +  ..++...+++++..+..-.....+. ...+.
T Consensus       491 ~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L-~~vl~  569 (1073)
T 3gjx_A          491 WSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFL-KTVVN  569 (1073)
T ss_dssp             CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHH-HHHHH
T ss_pred             CCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHH-HHHHH
Confidence            4578899999999999754332212111124566666666433   2  2345556678877765432222222 22345


Q ss_pred             HHHHhhcCCChhHHHHHHHHHHHccc
Q 005282          364 PLLKLLDSKNGSLQHNAAFALYGLAD  389 (704)
Q Consensus       364 ~L~~ll~~~~~~v~~~a~~~L~~l~~  389 (704)
                      .|++.++++++.++..|+.++..++.
T Consensus       570 ~L~~~m~~~~~~vq~aA~~af~~i~~  595 (1073)
T 3gjx_A          570 KLFEFMHETHDGVQDMACDTFIKIAQ  595 (1073)
T ss_dssp             HHHHHTTCCSTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            56677788899999999999999974

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=92.96  E-value=5.2  Score=40.20  Aligned_cols=156  Identities=19%  Similarity=0.226  Sum_probs=102.4

Q ss_pred             CChhhHHHHHHcCCcHHHHHHHhhccCCCCC---cchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCH
Q 005282          131 VKPEHQQIIVDTGALPHLVSLLKQYKNGGNS---RALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDV  207 (704)
Q Consensus       131 ~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~---~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~  207 (704)
                      ....+.+.+. .+|+..|+.+|..-......   ..+......++.||..+..........+.....+..|...+.+.++
T Consensus        98 ~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~  176 (383)
T 3eg5_B           98 HPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVP  176 (383)
T ss_dssp             SCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSH
T ss_pred             CccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCch
Confidence            4456777777 77899999999764322211   1234778888999999885444445555566779999999999999


Q ss_pred             HHHHHHHHHHHHhccCCc-hh-hHHhH----------hcCChHHHHHhhcC-CCHHHHHHHHHHHHHHhcCChhh-----
Q 005282          208 KVQRAAAGALRTLAFKND-EN-KKLIV----------ECNALPTLVLMLRS-EDASVHFEAVGVIGNLVHSSPSI-----  269 (704)
Q Consensus       208 ~~~~~a~~~L~~l~~~~~-~~-~~~~~----------~~~~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~-----  269 (704)
                      .++..++..|..+|.... .+ ...+.          +..-+..++..+.+ .+.+.+..++..+..+....+..     
T Consensus       177 ~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~  256 (383)
T 3eg5_B          177 NMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVH  256 (383)
T ss_dssp             HHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence            999999999999886442 22 22222          22346778888876 56777777777777777654432     


Q ss_pred             -HHHHHHcCCHHHHHHHhcC
Q 005282          270 -KKEVILAGALQPVIGLLSS  288 (704)
Q Consensus       270 -~~~~~~~~~l~~L~~ll~~  288 (704)
                       +..+...|..+.+-. ++.
T Consensus       257 lR~ef~~~Gl~~il~~-lr~  275 (383)
T 3eg5_B          257 IRSELMRLGLHQVLQE-LRE  275 (383)
T ss_dssp             HHHHHHHTTHHHHHHH-HTT
T ss_pred             HHHHHHHCChHHHHHH-Hhc
Confidence             233344555554444 544

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=92.63  E-value=4.2  Score=41.31  Aligned_cols=162  Identities=15%  Similarity=0.108  Sum_probs=108.5

Q ss_pred             HHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhc
Q 005282          166 GVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLR  245 (704)
Q Consensus       166 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~  245 (704)
                      ...+-|+..+......-|....     .++..+++++.+++..+|..|+..|..+|.+  +....     +...|+++|.
T Consensus        43 k~K~LaaQ~I~kffk~FP~l~~-----~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--~~i~k-----iaDvL~QlLq  110 (507)
T 3u0r_A           43 KEKRLAAQFIPKFFKHFPELAD-----SAINAQLDLCEDEDVSIRRQAIKELPQFATG--ENLPR-----VADILTQLLQ  110 (507)
T ss_dssp             HHHHHHHHHHHHHGGGCGGGHH-----HHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--TCHHH-----HHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhhChhhHH-----HHHHHHHHHHhcccHHHHHHHHHhhHHHhhh--hhhhh-----HHHHHHHHHh
Confidence            7888899999999887787655     4678899999999999999999999999974  44333     3577999999


Q ss_pred             CCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccC-CcchHHHHhcCChHHH
Q 005282          246 SEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAAD-SNSKVHIVQRGAVRPL  324 (704)
Q Consensus       246 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L  324 (704)
                      ++++.....+-.+|..+...++.        +.+..+...+..++..+|..++..|..-...- ++....-.+.-++..+
T Consensus       111 tdd~~E~~~V~~sL~sllk~Dpk--------~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~i  182 (507)
T 3u0r_A          111 TDDSAEFNLVNNALLSIFKMDAK--------GTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTES  182 (507)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHhcChH--------HHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHH
Confidence            99988888888888887765543        23455555555566788888888776544221 1211122223345556


Q ss_pred             HHhhCCCCHHHHHHHHHHHHHhh
Q 005282          325 IEMLQSPDSQLKEMSAFALGRLA  347 (704)
Q Consensus       325 ~~ll~~~~~~v~~~a~~~L~~l~  347 (704)
                      .+.|++-..+--......|..+-
T Consensus       183 kK~L~DVT~~EF~L~m~lL~~lk  205 (507)
T 3u0r_A          183 KKVLEDVTGEEFVLFMKILSGLK  205 (507)
T ss_dssp             HHHTTSCCHHHHHHHHHHHHTSG
T ss_pred             HHHhccccHHHHHHHHHHHHhcc
Confidence            66665443333333445554433

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=91.43  E-value=6.7  Score=45.51  Aligned_cols=167  Identities=14%  Similarity=0.101  Sum_probs=103.3

Q ss_pred             cHHHHHHhcC----CCHHHHHHHHHHHHHhcc----CCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCC
Q 005282          195 IPPLVELLKF----VDVKVQRAAAGALRTLAF----KNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSS  266 (704)
Q Consensus       195 i~~L~~ll~~----~~~~~~~~a~~~L~~l~~----~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~  266 (704)
                      +..+..++.+    .++.++..++-+++.+..    ..+.+....+ ..+...+.+.+...+..-+..++.+|+|+-.  
T Consensus       393 l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v-~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~--  469 (1056)
T 1lsh_A          393 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELL-QPLHDLLSQSSDRAKEEEIVLALKALGNAGQ--  469 (1056)
T ss_dssp             HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGT-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--
T ss_pred             HHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHH-HHHHHHHHHHHhcCChHHHHHHHHHhhccCC--
Confidence            4556677764    467788778777777753    1111111111 1123334445567788888999999999963  


Q ss_pred             hhhHHHHHHcCCHHHHHHHhcC-------CChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhh--CCCCHHHHH
Q 005282          267 PSIKKEVILAGALQPVIGLLSS-------SCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEML--QSPDSQLKE  337 (704)
Q Consensus       267 ~~~~~~~~~~~~l~~L~~ll~~-------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll--~~~~~~v~~  337 (704)
                      +         ..++.|..++..       ....++..|+++|.+++...+..        +-+.+..+.  ...++++|.
T Consensus       470 p---------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~--------v~~il~~i~~n~~e~~EvRi  532 (1056)
T 1lsh_A          470 P---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK--------VQEIVLPIFLNVAIKSELRI  532 (1056)
T ss_dssp             G---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH--------HHHHHHHHHHCTTSCHHHHH
T ss_pred             h---------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHH--------HHHHHHHHhcCCCCChHHHH
Confidence            3         246666666642       23467888999999987533221        345667777  457889998


Q ss_pred             HHHHHHHHhhcCCchhhhHHhhCChHHHHHhhc-CCChhHHHHHHHHHHHcccC
Q 005282          338 MSAFALGRLAQDTHNQAGIAQDGGILPLLKLLD-SKNGSLQHNAAFALYGLADN  390 (704)
Q Consensus       338 ~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~-~~~~~v~~~a~~~L~~l~~~  390 (704)
                      .|+..|....  +..       ..+..+...+. +.+..|.......|.+++.+
T Consensus       533 aA~~~Lm~t~--P~~-------~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s  577 (1056)
T 1lsh_A          533 RSCIVFFESK--PSV-------ALVSMVAVRLRREPNLQVASFVYSQMRSLSRS  577 (1056)
T ss_dssp             HHHHHHHHTC--CCH-------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHC--cCH-------HHHHHHHHHHhhCchHHHHHHHHHHHHHHHhc
Confidence            8888875422  211       12334454443 36778888888888888863

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=91.13  E-value=13  Score=37.23  Aligned_cols=162  Identities=18%  Similarity=0.208  Sum_probs=103.1

Q ss_pred             CChhhHHHHHHcCCcHHHHHHHhhccCCCCC---cchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCH
Q 005282          131 VKPEHQQIIVDTGALPHLVSLLKQYKNGGNS---RALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDV  207 (704)
Q Consensus       131 ~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~---~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~  207 (704)
                      ....+.+.+. .+|+..|+..|.........   ..+......++.||..++.........+...+++..+...+.+.++
T Consensus        36 ~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~  114 (386)
T 2bnx_A           36 NPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVP  114 (386)
T ss_dssp             SCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSH
T ss_pred             CCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCc
Confidence            4456777775 67888899988765332211   1234778889999999986444445555566778999999999999


Q ss_pred             HHHHHHHHHHHHhccCCc-hh-hHHhH----------hcCChHHHHHhhc-CCCHHHHHHHHHHHHHHhcCChh------
Q 005282          208 KVQRAAAGALRTLAFKND-EN-KKLIV----------ECNALPTLVLMLR-SEDASVHFEAVGVIGNLVHSSPS------  268 (704)
Q Consensus       208 ~~~~~a~~~L~~l~~~~~-~~-~~~~~----------~~~~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~------  268 (704)
                      .++..++..|..+|.... .. ...+.          +..-+..++..+. +.+.+.+..++..+..+....+.      
T Consensus       115 ~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~  194 (386)
T 2bnx_A          115 NMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVH  194 (386)
T ss_dssp             HHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHH
Confidence            999999998888886332 22 22221          2234566777776 45667777777777777765443      


Q ss_pred             hHHHHHHcCCHHHHHHHhcCCChhH
Q 005282          269 IKKEVILAGALQPVIGLLSSSCSES  293 (704)
Q Consensus       269 ~~~~~~~~~~l~~L~~ll~~~~~~~  293 (704)
                      .+..+...|..+.+-.+=...++.+
T Consensus       195 LR~Ef~~~GL~~il~~Lr~~~~~~L  219 (386)
T 2bnx_A          195 IRSELMRLGLHQVLQELREIENEDM  219 (386)
T ss_dssp             HHHHHHHTTHHHHHHHHTTCCCHHH
T ss_pred             HHHHHHHCChHHHHHHHhccCChhH
Confidence            2233444555454444333344444

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=89.03  E-value=21  Score=42.20  Aligned_cols=304  Identities=11%  Similarity=0.028  Sum_probs=155.4

Q ss_pred             HHHHHHhhhccCCchhhHHHHHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHH
Q 005282           48 RAQIDILNSKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALG  127 (704)
Q Consensus        48 ~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~  127 (704)
                      ..+...+..+.+.+ .+...+.+|-..|.++..+|         .+...+...|...+.        +..+|..|+..|.
T Consensus        11 ~~l~~~l~~~~~p~-~~~~~r~~Ae~~L~~~~~~p---------~~~~~~~~~L~~~s~--------~~~vR~~A~~~Lk   72 (1204)
T 3a6p_A           11 EQLVKAVTVMMDPN-STQRYRLEALKFCEEFKEKC---------PICVPCGLRLAEKTQ--------VAIVRHFGLQILE   72 (1204)
T ss_dssp             HHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHHC---------TTHHHHHHHHTSTTS--------CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCC-CChHHHHHHHHHHHHHHhCc---------hHHHHHHHHHHccCC--------CHHHHHHHHHHHH
Confidence            33444554444432 23335666777776664433         234444444432222        4589999999999


Q ss_pred             hhc-C-----ChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHH
Q 005282          128 LLA-V-----KPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVEL  201 (704)
Q Consensus       128 ~l~-~-----~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l  201 (704)
                      +.. .     .++.+..+.     ..++..+....... ......++...+.++..++...-. ..+   .+.++.|+.+
T Consensus        73 ~~I~~~W~~l~~e~k~~Ir-----~~ll~~l~~~~~~~-~~~~~~vr~kla~~la~Ia~~d~p-~~W---p~ll~~L~~~  142 (1204)
T 3a6p_A           73 HVVKFRWNGMSRLEKVYLK-----NSVMELIANGTLNI-LEEENHIKDALSRIVVEMIKREWP-QHW---PDMLIELDTL  142 (1204)
T ss_dssp             HHHHHSGGGSCHHHHHHHH-----HHHHHHHHHSSCCT-TSSCHHHHHHHHHHHHHHHHHHST-TTC---TTHHHHHHHH
T ss_pred             HHHHHhcccCCHHHHHHHH-----HHHHHHHHhhcccc-ccccHHHHHHHHHHHHHHHHHhCc-ccc---hHHHHHHHHH
Confidence            886 2     233333333     34555554432110 000137888889999998853211 111   4667888888


Q ss_pred             hcCCCHHHHHHHHHHHHHhccC---C---chhhH-----HhHhc--CChHHHHHhhcC-------------------CCH
Q 005282          202 LKFVDVKVQRAAAGALRTLAFK---N---DENKK-----LIVEC--NALPTLVLMLRS-------------------EDA  249 (704)
Q Consensus       202 l~~~~~~~~~~a~~~L~~l~~~---~---~~~~~-----~~~~~--~~i~~L~~lL~~-------------------~~~  249 (704)
                      +++ ++..+..++.+|..++.+   .   ...+.     .+.+.  .+++.+..++.+                   .+.
T Consensus       143 ~~~-~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~  221 (1204)
T 3a6p_A          143 SKQ-GETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANC  221 (1204)
T ss_dssp             HHT-CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHH
T ss_pred             hcC-CHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhH
Confidence            866 566678888888888642   0   01111     11111  122333333332                   123


Q ss_pred             HHHHHHHHHHHHHhcCChhhHHHHHHcC--CHHHHHHHhcCCChhHHHHHHHHHHHHhccCCc--chHHHHhc---CChH
Q 005282          250 SVHFEAVGVIGNLVHSSPSIKKEVILAG--ALQPVIGLLSSSCSESKREAALLLGQFAAADSN--SKVHIVQR---GAVR  322 (704)
Q Consensus       250 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~--~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~---~~i~  322 (704)
                      .++..++.++.+...--+  ...+.+..  .++.+..++.  +++++..|+.+|..++.....  .+..++..   ..+.
T Consensus       222 ~l~~~aL~~l~~~l~Wi~--~~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~  297 (1204)
T 3a6p_A          222 RVGVAALNTLAGYIDWVS--MSHITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMH  297 (1204)
T ss_dssp             HHHHHHHHHHHTTTTTSC--HHHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHH
T ss_pred             HHHHHHHHHHHHHHhccC--HHHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHH
Confidence            456667777765542211  12222322  5666666655  467889999999999864322  11111111   1123


Q ss_pred             HHHHhhC--------CCCHHHHHHHHHHHHHhhcCCchhhhHHh-----------hCChHHHHHhhcCCChhHHHHHHHH
Q 005282          323 PLIEMLQ--------SPDSQLKEMSAFALGRLAQDTHNQAGIAQ-----------DGGILPLLKLLDSKNGSLQHNAAFA  383 (704)
Q Consensus       323 ~L~~ll~--------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-----------~~~~~~L~~ll~~~~~~v~~~a~~~  383 (704)
                      .++..+.        ..+.+..+..+..+..++..   ...++.           .+.++.++.+..+.+..+...++..
T Consensus       298 ~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~~---l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~f  374 (1204)
T 3a6p_A          298 YILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQ---LCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMT  374 (1204)
T ss_dssp             HHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHH---HHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHH
T ss_pred             HHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHH---HHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHH
Confidence            3444431        12356666777777776621   111111           1334555666666666666555554


Q ss_pred             HHHc
Q 005282          384 LYGL  387 (704)
Q Consensus       384 L~~l  387 (704)
                      -..+
T Consensus       375 W~~l  378 (1204)
T 3a6p_A          375 WGAL  378 (1204)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4433

>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}

Probab=87.64  E-value=15  Score=34.97  Aligned_cols=168  Identities=11%  Similarity=0.119  Sum_probs=106.4

Q ss_pred             hhhHHHHHHHHHHHHhhhccCCchhhHHHHHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHH
Q 005282           39 TQQDLVQDIRAQIDILNSKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEV  118 (704)
Q Consensus        39 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v  118 (704)
                      ....+..+...+.+++..-=...+.+......|+..|..++.+-++--.++... ...|-.++.....        ++.+
T Consensus        16 ~~yeFs~~F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~e-f~lL~nL~~~~~~--------~~~~   86 (315)
T 3qml_C           16 GDYEFSSDFKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHE-FALLANLSLNENL--------PLTL   86 (315)
T ss_dssp             CCCTTHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHH-HHHHHHHHHCTTS--------CHHH
T ss_pred             cccchHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCc-HHHHHHHHhhccC--------ChhH
Confidence            334556667777777655311223344456889999999999866555555422 3444444432222        3589


Q ss_pred             HHHHHHHHHhhc-CChhhHHHHHHc--CCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCc
Q 005282          119 EKECAFALGLLA-VKPEHQQIIVDT--GALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGI  195 (704)
Q Consensus       119 ~~~a~~~L~~l~-~~~~~~~~~~~~--g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i  195 (704)
                      ++.|+++|+... .+|.....+.+.  +.+..++.-|.......... ...++..-+.+|.-|...+..    + ...++
T Consensus        87 rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~-~~~l~KR~LsII~~L~~~~~~----F-~~~~m  160 (315)
T 3qml_C           87 RELSTRVITSCLRNNPPVVEFINESFPNFKSKIMAALSNLNDSNHRS-SNILIKRYLSILNELPVTSED----L-PIYST  160 (315)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CC-CHHHHHHHHHHHHHSCCCSTT----C---CCH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHHHHHHHHhhcccch-hHHHHHHHHHHHHHHhcChHh----h-hhccH
Confidence            999999999999 899988877764  34555555444421111111 126777778888888864422    2 35677


Q ss_pred             HHHHHHhcCC--CHHHHHHHHHHHHHhc
Q 005282          196 PPLVELLKFV--DVKVQRAAAGALRTLA  221 (704)
Q Consensus       196 ~~L~~ll~~~--~~~~~~~a~~~L~~l~  221 (704)
                      ..|.+++...  ++.++..++..+..+-
T Consensus       161 ~~L~~ly~~~~~d~~~k~Kvl~li~d~f  188 (315)
T 3qml_C          161 VVLQNVYERNNKDKQLQIKVLELISKIL  188 (315)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHccCCCCHHHHHHHHHHHHHHc
Confidence            8888888877  8999998888887775

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=86.68  E-value=19  Score=41.69  Aligned_cols=170  Identities=15%  Similarity=0.122  Sum_probs=108.6

Q ss_pred             cHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhh----cChhhhhhhhccCCcHHHH----HHhcCCCHHHHHHHHHH
Q 005282          145 LPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAH----ENANIKTRVRVEDGIPPLV----ELLKFVDVKVQRAAAGA  216 (704)
Q Consensus       145 l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~----~~~~~~~~~~~~~~i~~L~----~ll~~~~~~~~~~a~~~  216 (704)
                      +..+..++.++....    .+.++..++.+++.+..    .++.+.     ...++.+.    +.+...+.+-+..++.+
T Consensus       393 l~~~~~l~~~~~~~~----~~~l~~ta~La~gslV~k~c~~~~~c~-----~~~v~~i~~~l~~~~~~~~~~~~~~~Lka  463 (1056)
T 1lsh_A          393 LSYARELLNTSFIRN----RPILRKTAVLGYGSLVFRYCANTVSCP-----DELLQPLHDLLSQSSDRAKEEEIVLALKA  463 (1056)
T ss_dssp             HHHHHHHHTCHHHHT----CHHHHHHHHHHHHHHHHHHHTTCSSCC-----GGGTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHhCccccc----CHHHHHHHHHHHHHHHHHHhccCCCCC-----HHHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence            345556665433100    12667777777777653    222211     12244444    44456778888999999


Q ss_pred             HHHhccCCchhhHHhHhcCChHHHHHhhc-------CCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHh--c
Q 005282          217 LRTLAFKNDENKKLIVECNALPTLVLMLR-------SEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLL--S  287 (704)
Q Consensus       217 L~~l~~~~~~~~~~~~~~~~i~~L~~lL~-------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll--~  287 (704)
                      |+|+..  +         ..++.|.+++.       +....++..|+++|..++...+...        -+.++.+.  .
T Consensus       464 LGN~g~--p---------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v--------~~il~~i~~n~  524 (1056)
T 1lsh_A          464 LGNAGQ--P---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKV--------QEIVLPIFLNV  524 (1056)
T ss_dssp             HHHHTC--G---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHH--------HHHHHHHHHCT
T ss_pred             hhccCC--h---------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHH--------HHHHHHHhcCC
Confidence            999984  2         24667777764       1245788999999999986544322        34566677  4


Q ss_pred             CCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCCch
Q 005282          288 SSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQS-PDSQLKEMSAFALGRLAQDTHN  352 (704)
Q Consensus       288 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~  352 (704)
                      ..++++|..|+..|...   ++..       ..+..+...+.. ++.+|...+...|.+++.....
T Consensus       525 ~e~~EvRiaA~~~Lm~t---~P~~-------~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P  580 (1056)
T 1lsh_A          525 AIKSELRIRSCIVFFES---KPSV-------ALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNP  580 (1056)
T ss_dssp             TSCHHHHHHHHHHHHHT---CCCH-------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred             CCChHHHHHHHHHHHHH---CcCH-------HHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCc
Confidence            56778888888877643   3332       236667777765 7889999999999999976543

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=86.44  E-value=13  Score=37.33  Aligned_cols=142  Identities=15%  Similarity=0.232  Sum_probs=91.4

Q ss_pred             cCChHHHHHhhc-----------CCCHHHHHHHHHHHHHHhcCChhhHHHHH-HcCCHHHHHHHhcCCChhHHHHHHHHH
Q 005282          234 CNALPTLVLMLR-----------SEDASVHFEAVGVIGNLVHSSPSIKKEVI-LAGALQPVIGLLSSSCSESKREAALLL  301 (704)
Q Consensus       234 ~~~i~~L~~lL~-----------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~ll~~~~~~~~~~a~~~L  301 (704)
                      .+|+..|+.+|.           ..+......++.||..+... ......+. ....+..+...+.+..+.++..++..|
T Consensus       108 ~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~-~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL  186 (383)
T 3eg5_B          108 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLL  186 (383)
T ss_dssp             HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSS-HHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHH
T ss_pred             HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcc-hhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            456677777664           12457778899999988754 43344444 467889999999999999999999999


Q ss_pred             HHHhccCC-cc-hHHHH----------hcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCCchh-------hhHHhhCC
Q 005282          302 GQFAAADS-NS-KVHIV----------QRGAVRPLIEMLQS-PDSQLKEMSAFALGRLAQDTHNQ-------AGIAQDGG  361 (704)
Q Consensus       302 ~~l~~~~~-~~-~~~~~----------~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~-------~~~~~~~~  361 (704)
                      ..+|.... .+ ...++          +..-+..++..+.+ .+.+.+..+...+..+...++..       ..+... |
T Consensus       187 ~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~-G  265 (383)
T 3eg5_B          187 SALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRL-G  265 (383)
T ss_dssp             HHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHT-T
T ss_pred             HHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC-C
Confidence            98886443 33 33332          23567888888886 56677777666666666655432       223344 4


Q ss_pred             hHHHHHhhcC-CChhHH
Q 005282          362 ILPLLKLLDS-KNGSLQ  377 (704)
Q Consensus       362 ~~~L~~ll~~-~~~~v~  377 (704)
                      +..++.-++. .++.+.
T Consensus       266 l~~il~~lr~~~~~~L~  282 (383)
T 3eg5_B          266 LHQVLQELREIENEDMK  282 (383)
T ss_dssp             HHHHHHHHTTSCCHHHH
T ss_pred             hHHHHHHHhcCCChhHH
Confidence            4455544544 454443

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=85.14  E-value=23  Score=32.54  Aligned_cols=145  Identities=17%  Similarity=0.220  Sum_probs=84.7

Q ss_pred             cCCcHHHHHHhcC-----------CCHHHHHHHHHHHHHhccCCchhhHHhH-hcCChHHHHHhhcCCCHHHHHHHHHHH
Q 005282          192 EDGIPPLVELLKF-----------VDVKVQRAAAGALRTLAFKNDENKKLIV-ECNALPTLVLMLRSEDASVHFEAVGVI  259 (704)
Q Consensus       192 ~~~i~~L~~ll~~-----------~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~~~i~~L~~lL~~~~~~v~~~a~~~L  259 (704)
                      .+|+..|+.+|..           .+...+..++.||..+.. +......+. ..+++..+...|.++++.++..++..|
T Consensus        42 ~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn-~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL  120 (233)
T 2f31_A           42 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLL  120 (233)
T ss_dssp             HHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTS-SHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhC-ChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHH
Confidence            4566666666541           145678889999999985 555555554 566889999999999999999999999


Q ss_pred             HHHhcCCh-hh-HHHHH----------HcCCHHHHHHHhcCC-ChhHHHHHHHHHHHHhccCCcchH-------HHHhcC
Q 005282          260 GNLVHSSP-SI-KKEVI----------LAGALQPVIGLLSSS-CSESKREAALLLGQFAAADSNSKV-------HIVQRG  319 (704)
Q Consensus       260 ~~l~~~~~-~~-~~~~~----------~~~~l~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~-------~~~~~~  319 (704)
                      .-+|..++ .. ...+.          +..-...++..+.+. +.+.+..+...+-.+.. .++...       .+...|
T Consensus       121 ~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~-~~~dl~~R~~lR~ef~~~G  199 (233)
T 2f31_A          121 SALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALIT-PAEELDFRVHIRSELMRLG  199 (233)
T ss_dssp             HHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHT-TCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHCC
Confidence            88886543 12 22221          122455677767643 33444444444444443 333321       233445


Q ss_pred             ChHHHHHhhCCCCHHHHHH
Q 005282          320 AVRPLIEMLQSPDSQLKEM  338 (704)
Q Consensus       320 ~i~~L~~ll~~~~~~v~~~  338 (704)
                      +.+.+-++=...++++..+
T Consensus       200 l~~il~~l~~~~~~~L~~Q  218 (233)
T 2f31_A          200 LHQVLQELREIENEDMKVQ  218 (233)
T ss_dssp             HHHHHHHHHHCCCHHHHHH
T ss_pred             hHHHHHHHhccCCHHHHHH
Confidence            5544444433345544433

>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}

Probab=84.68  E-value=5.2  Score=37.96  Aligned_cols=145  Identities=11%  Similarity=0.057  Sum_probs=92.1

Q ss_pred             HHHHHhhcCC------CHHHHHHHHHHHHHHhcCChhhHHHHHH--cCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCC
Q 005282          238 PTLVLMLRSE------DASVHFEAVGVIGNLVHSSPSIKKEVIL--AGALQPVIGLLSSSCSESKREAALLLGQFAAADS  309 (704)
Q Consensus       238 ~~L~~lL~~~------~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~  309 (704)
                      ..+..++.++      +......++..|..++.+ -..-..++.  ...+..|+ +.....+.+++.|+++|+...+.+|
T Consensus        25 ~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHD-i~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRNNP  102 (315)
T 3qml_C           25 KEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHD-YKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRNNP  102 (315)
T ss_dssp             HHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTS-HHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhh-HHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHccCH
Confidence            3445555554      445667888888888754 333333443  23344444 2234556789999999999988888


Q ss_pred             cchHHHHhc--CChHHHHHhhC----C---CCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCC--ChhHHH
Q 005282          310 NSKVHIVQR--GAVRPLIEMLQ----S---PDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSK--NGSLQH  378 (704)
Q Consensus       310 ~~~~~~~~~--~~i~~L~~ll~----~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~--~~~v~~  378 (704)
                      .....+.+.  ..+..++.-|.    .   ....+++.-+.+|..|...+..   + ...++..|.+++...  ++.++.
T Consensus       103 ~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~---F-~~~~m~~L~~ly~~~~~d~~~k~  178 (315)
T 3qml_C          103 PVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSED---L-PIYSTVVLQNVYERNNKDKQLQI  178 (315)
T ss_dssp             HHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTT---C---CCHHHHHHHHHHTTTCHHHHH
T ss_pred             HHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHh---h-hhccHHHHHHHHccCCCCHHHHH
Confidence            877766654  44444443332    2   2446777788888888887621   2 245667777777666  889999


Q ss_pred             HHHHHHHHcc
Q 005282          379 NAAFALYGLA  388 (704)
Q Consensus       379 ~a~~~L~~l~  388 (704)
                      .++..+..+-
T Consensus       179 Kvl~li~d~f  188 (315)
T 3qml_C          179 KVLELISKIL  188 (315)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHc
Confidence            8888877664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	704
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	6e-23
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	2e-18
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	1e-13
d1r29a_	122	d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB	2e-22
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	4e-22
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	5e-21
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	3e-20
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	2e-15
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	1e-11
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	5e-04
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	6e-22
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	1e-19
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	7e-17
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	1e-16
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	5e-16
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	2e-14
d1buoa_	121	d.42.1.1 (A:) Promyelocytic leukaemia zinc finger	1e-20
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	2e-19
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	4e-18
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	9e-18
d1xqra1	264	a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp	1e-06
d1xqra1	264	a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp	5e-05
d1xqra1	264	a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp	1e-04
d1ibrb_	458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	8e-06
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	2e-04
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	0.002
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	0.003
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	3e-04
d1lrva_	233	a.118.1.5 (A:) Leucine-rich repeat variant {Azotob	4e-04
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	0.002
d2vgla_	584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	0.002
d1oyza_	276	a.118.1.16 (A:) Hypothetical protein YibA {Escheri	0.004

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  100 bits (249), Expect = 6e-23
 Identities = 87/464 (18%), Positives = 170/464 (36%), Gaps = 68/464 (14%)

Query: 3   RRERQTSPARRS------LKRKLEQDFEEKPDRKVSIVESGATQQDLVQDIRAQI-DILN 55
           RR+ Q    R++       KR+      +  D       S +  Q     ++ ++  +  
Sbjct: 24  RRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVSADQQFYSQLQQELPQMTQ 83

Query: 56  SKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYE 115
              S D  ++ +A      ++       I  +++  G VP LVE ++             
Sbjct: 84  QLNSDDMQEQLSATVKFRQILSREHRPPI-DVVIQAGVVPRLVEFMRENQ---------P 133

Query: 116 HEVEKECAFALGLLAV-KPEHQQIIVDTGALPHLVSLLKQYKNGGNSRAL---------- 164
             ++ E A+AL  +A       +++VD  A+P  + LL         +A+          
Sbjct: 134 EMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDS 193

Query: 165 ------------------------SGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVE 200
                                     +IR A   ++NL            V   +P L +
Sbjct: 194 TDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAK 253

Query: 201 LLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIG 260
           L+  +D +    A  A+  L+    E  + +++      LV +L  E   V   A+  +G
Sbjct: 254 LIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVG 313

Query: 261 NLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGA 320
           N+V  +    + VI AG L  +  LLSS     K+EA   +    A ++     ++    
Sbjct: 314 NIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANL 373

Query: 321 VRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGI----AQDGGILPLLKLLDSKNGSL 376
           + PL+++L+  + + K+ + +A+   +     +  I       G I PL  LL+  +  +
Sbjct: 374 IPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRI 433

Query: 377 QHNAAFALYGLAD-----------NEDNVADLV-RVGGVQKLQD 408
                 AL  +             N +  AD + + GG++K+ +
Sbjct: 434 IEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFN 477

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 87.1 bits (214), Expect = 2e-18
 Identities = 62/331 (18%), Positives = 131/331 (39%), Gaps = 14/331 (4%)

Query: 191 VEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENK-KLIVECNALPTLV-LMLRSED 248
           ++  +P + + L   D++ Q +A    R +  +       ++++   +P LV  M  ++ 
Sbjct: 74  LQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQP 133

Query: 249 ASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAAD 308
             +  EA   + N+   + +  K V+ A A+   I LL +   E K +A   LG  A   
Sbjct: 134 EMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDS 193

Query: 309 SNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKL 368
           ++ + +++Q  A+ P++ +  S    L   + + L  L +    Q   +     LP L  
Sbjct: 194 TDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAK 253

Query: 369 LDSKNGS-LQHNAAFALYGLADNEDNVADLVRVGGVQKLQ----------DGEFTVQPTK 417
           L     +    +A +A+  L+D        V    + K                 ++   
Sbjct: 254 LIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVG 313

Query: 418 DCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPD-DCKTIFIDNNG 476
           + V     + +  ++  VL  L  LL      +K+     ++++ A + +     ID N 
Sbjct: 314 NIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANL 373

Query: 477 LELLLGLLESTSVKQREESSVALYKLATKAT 507
           +  L+ LLE    K ++E+  A+   ++   
Sbjct: 374 IPPLVKLLEVAEYKTKKEACWAISNASSGGL 404

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 71.7 bits (174), Expect = 1e-13
 Identities = 69/414 (16%), Positives = 147/414 (35%), Gaps = 78/414 (18%)

Query: 29  RKVSIVESGATQQDLVQDIRAQIDILNSKFSSDETDRAAAKTASHALVEFAKNEEIVSLI 88
           R++   E       ++Q       +   + +  E  +  A  A   +           ++
Sbjct: 101 RQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASG--TSAQTKVV 158

Query: 89  VDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVK-PEHQQIIVDTGALPH 147
           VD  AVP  ++ L T             EV+++  +ALG +A    +++  ++   A+  
Sbjct: 159 VDADAVPLFIQLLYTG----------SVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEP 208

Query: 148 LVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDV 207
           ++ L    K          +IR A   ++NL            V   +P L +L+  +D 
Sbjct: 209 ILGLFNSNK--------PSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDT 260

Query: 208 KVQRAAAGALRTLAFKNDEN---------------------------------------- 227
           +    A  A+  L+    E                                         
Sbjct: 261 ETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGND 320

Query: 228 --KKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGL 285
              ++++    LP L L+L S   ++  EA   I N+   +    + VI A  + P++ L
Sbjct: 321 LQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKL 380

Query: 286 LSSSCSESKREAALLLGQFAAADSNSK---VHIVQRGAVRPLIEMLQSPDSQLKEMSAFA 342
           L  +  ++K+EA   +   ++          ++V +G ++PL ++L+  D+++ E++  A
Sbjct: 381 LEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDA 440

Query: 343 LGRLAQDTHNQAG------------IAQDGGILPLLKLLDSKNGSLQHNAAFAL 384
           L  + +                   I + GG+  +     ++N  +   A   +
Sbjct: 441 LENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKII 494

>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.0 bits (225), Expect = 2e-22
 Identities = 24/100 (24%), Positives = 44/100 (44%)

Query: 527 EQFVNNPTLSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNV 586
            +  +   L+DV  VV  +QF AH+  L+A S  F ++F    K   +     P I    
Sbjct: 17  NRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPEINPEG 76

Query: 587 FELMMRFIYTGNVDVSVDIAQDLLRAADQYLLEGLKRLCE 626
           F +++ F+YT  +++       ++  A    +E +   C 
Sbjct: 77  FNILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDTCR 116

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.0 bits (242), Expect = 4e-22
 Identities = 42/336 (12%), Positives = 99/336 (29%), Gaps = 31/336 (9%)

Query: 195 IPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFE 254
           IP  V+ L   D K Q   A  ++   F+++  K+ + +   +  LV +LRS + +V   
Sbjct: 4   IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63

Query: 255 AVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVH 314
           A G + NLV  S + K E      ++  + LL  + +   ++    L    ++    K  
Sbjct: 64  AAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEE 123

Query: 315 IVQRG---------------AVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQD 359
           ++                           +  D ++   +   L  L+     +  +   
Sbjct: 124 LIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNY 183

Query: 360 GGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDC 419
            G++  L        +       ++        N++  +      + +  E         
Sbjct: 184 SGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLE--------- 234

Query: 420 VARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPDDCKTIFIDNNGLEL 479
                     +      +        +D+ +       L               ++ +  
Sbjct: 235 -------YNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRT 287

Query: 480 LLGLLESTSVKQREESSVALYKLATKATSLSPMDAA 515
            L L+  +      E+     +  T +  L     +
Sbjct: 288 YLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMS 323

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.5 bits (233), Expect = 5e-21
 Identities = 70/409 (17%), Positives = 128/409 (31%), Gaps = 61/409 (14%)

Query: 145 LPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKF 204
           +P  V  L        S          A  I +   ++ + K +V    GI  LV+LL+ 
Sbjct: 4   IPKAVQYL--------SSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRS 55

Query: 205 VDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLV-LMLRSEDASVHFEAVGVIGNLV 263
            +  VQ+AAAGALR L F++  NK      N +   V L+ R+ +A +  +  G++ NL 
Sbjct: 56  PNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNL- 114

Query: 264 HSSPSIKKEVILAGALQPVIGLLSSSCS----------------ESKREAALLLGQFAAA 307
            SS    KE ++A AL  +   +    S                E    A   L   ++A
Sbjct: 115 -SSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA 173

Query: 308 DSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLK 367
           D+  +      G +  L+  +Q+  +  +     ++       HN +            +
Sbjct: 174 DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDK-SVENCMCVLHNLSYRLDAEVPTRYRQ 232

Query: 368 LL-----------------DSKNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKL---- 406
           L                  +  +  + +N    L     N      L     ++      
Sbjct: 233 LEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLM 292

Query: 407 QDGEFTVQPTKDCVAR-----------TLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVT 455
              +          A            +       +  + L  +  LL+  +  V R   
Sbjct: 293 GKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGA 352

Query: 456 LALAHLCAPDDCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLAT 504
             L+++          + N     +  LL S +        +      T
Sbjct: 353 SLLSNMSRHPLLHR-VMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYT 400

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.8 bits (226), Expect = 3e-20
 Identities = 65/490 (13%), Positives = 145/490 (29%), Gaps = 74/490 (15%)

Query: 46  DIRAQIDILNSKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPP 105
            I   +  L+S    ++     A    H   +   +E     +   G +  LV+ L++P 
Sbjct: 3   TIPKAVQYLSS--QDEKYQAIGAYYIQHTCFQ---DESAKQQVYQLGGICKLVDLLRSP- 56

Query: 106 QLTNAQIPYEHEVEKECAFALGLLAVK-PEHQQIIVDTGALPHLVSLLKQYKNGGNSRAL 164
                       V++  A AL  L  +   ++        +   VSLL++  N    + L
Sbjct: 57  ---------NQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQL 107

Query: 165 SGVIRRAADAITNLAHENANIKTRVRVEDGIP-------PLVELLKFVDVKVQRAAAGAL 217
           +G++   +          A+    +     IP             + VD +V   A G L
Sbjct: 108 TGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCL 167

Query: 218 RTLAFKNDENKKLIVECNALPTLVLMLRSEDASV--------------HFEAVGVIGNLV 263
           R L+  +   + +      + +L+  +++  A+               H  +  +   + 
Sbjct: 168 RNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVP 227

Query: 264 HSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRP 323
                ++     A   +   G  S+   +               +      +    A+R 
Sbjct: 228 TRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRT 287

Query: 324 LIEMLQSPDSQ-LKEMSAFALGRLAQDTH------NQAGIAQDGGILPLLKLLDSKNGSL 376
            + ++         E  A AL  L           +Q    ++ G+  + +LL S N  +
Sbjct: 288 YLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDV 347

Query: 377 QHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVL 436
             + A  L  ++ +      +       ++                             L
Sbjct: 348 VRSGASLLSNMSRHPLLHRVMGN-QVFPEVTR---------------------------L 379

Query: 437 NHLLYLLRVADRAVKRRVTLALAHLCAPDDC-KTIFIDNNGLELLLGLLEST-SVKQREE 494
                        +       + +L A        +  ++ L  ++ L  S+ S K  E 
Sbjct: 380 LTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEA 439

Query: 495 SSVALYKLAT 504
           + + L  + +
Sbjct: 440 ARLLLSDMWS 449

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.8 bits (187), Expect = 2e-15
 Identities = 39/313 (12%), Positives = 85/313 (27%), Gaps = 19/313 (6%)

Query: 55  NSKFSSDETDRAAAKTASHALVEFAKNEE-IVSLIVDNGAVPALVEHLQTPPQLTNAQIP 113
           NS  S +  D      A+  L   +  +    ++   +G + +L+ ++Q       A   
Sbjct: 147 NSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVA---ASRC 203

Query: 114 YEHEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAAD 173
            +  VE        L                     +  ++   G  S     ++    D
Sbjct: 204 DDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYD 263

Query: 174 AITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRA------AAGALRTLAFKNDEN 227
                   N      +   D I   + L+                           +  +
Sbjct: 264 CPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMS 323

Query: 228 KKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLS 287
           + + ++   LP +  +L+S ++ V      ++ N+          V+       V  LL+
Sbjct: 324 QLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLL--HRVMGNQVFPEVTRLLT 381

Query: 288 SSCSESK------REAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQ-LKEMSA 340
           S    +         A   +    A+             +  +I + +S  S    E + 
Sbjct: 382 SHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAAR 441

Query: 341 FALGRLAQDTHNQ 353
             L  +      Q
Sbjct: 442 LLLSDMWSSKELQ 454

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.8 bits (156), Expect = 1e-11
 Identities = 29/220 (13%), Positives = 71/220 (32%), Gaps = 15/220 (6%)

Query: 4   RERQTSPARRSLKRKLEQDFEEKPDRKVSIVESGATQQDLVQDIRAQIDILNSKFSSDET 63
            E+ ++    +   K+  +  + P  +      G+        IR  ++++         
Sbjct: 242 TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATL 301

Query: 64  DRAAAKTASHALVEFAKNEEIVSLIV-DNGAVPALVEHLQTPPQLTNAQIPYEHEVEKEC 122
           +  A    +    +   +  +  LI      +P +   LQ+             +V +  
Sbjct: 302 EACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGN----------SDVVRSG 351

Query: 123 AFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHEN 182
           A  L  ++  P   +++ +    P +  LL    + GN+     ++  A   + NL    
Sbjct: 352 ASLLSNMSRHPLLHRVMGN-QVFPEVTRLLT--SHTGNTSNSEDILSSACYTVRNLMASQ 408

Query: 183 ANIKTRVRVEDGIPPLVELLKFVD-VKVQRAAAGALRTLA 221
             +  +      +  ++ L +     K   AA   L  + 
Sbjct: 409 PQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMW 448

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 5e-04
 Identities = 14/74 (18%), Positives = 27/74 (36%), Gaps = 1/74 (1%)

Query: 433 GRVLNHLLYLLRVADRAVKRRVTLALAHLCA-PDDCKTIFIDNNGLELLLGLLESTSVKQ 491
           G  +   +  L   D   +      + H C   +  K       G+  L+ LL S +   
Sbjct: 1   GLTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNV 60

Query: 492 REESSVALYKLATK 505
           ++ ++ AL  L  +
Sbjct: 61  QQAAAGALRNLVFR 74

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.7 bits (241), Expect = 6e-22
 Identities = 61/254 (24%), Positives = 108/254 (42%), Gaps = 11/254 (4%)

Query: 142 TGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVEL 201
           T A+P L  LL              V+ +AA  +  L+ + A+    +R    +  +V  
Sbjct: 16  TRAIPELTKLLN--------DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRT 67

Query: 202 LKF-VDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIG 260
           ++   DV+  R  AG L  L+  + E    I +   +P LV ML S   SV F A+  + 
Sbjct: 68  MQNTNDVETARCTAGTLHNLS-HHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLH 126

Query: 261 NLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGA 320
           NL+      K  V LAG LQ ++ LL+ +  +        L   A  +  SK+ I+  G 
Sbjct: 127 NLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGG 186

Query: 321 VRPLIEMLQSPDSQLKEMSAFALGRL-AQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHN 379
            + L+ ++++   +    +   + ++ +  + N+  I + GG+  L   L   +  L  N
Sbjct: 187 PQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQN 246

Query: 380 AAFALYGLADNEDN 393
             + L  L+D    
Sbjct: 247 CLWTLRNLSDAATK 260

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.7 bits (223), Expect = 1e-19
 Identities = 49/285 (17%), Positives = 92/285 (32%), Gaps = 24/285 (8%)

Query: 104 PPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRA 163
              +        + V         L     +++ ++   G +  LV  + +  +  +   
Sbjct: 269 GTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITE 328

Query: 164 LSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFK 223
            +    R    +T+   E    +  VR+  G+P +V+LL          A   L      
Sbjct: 329 PAICALRH---LTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL 385

Query: 224 NDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVI 283
              N   + E  A+P LV +L                                       
Sbjct: 386 CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQ-------------------- 425

Query: 284 GLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFAL 343
             +     E   E         A D ++++ I     +   +++L SP   ++ ++A  L
Sbjct: 426 -FVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVL 484

Query: 344 GRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLA 388
             LAQD      I  +G   PL +LL S+N  +   AA  L+ ++
Sbjct: 485 CELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 529

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.9 bits (200), Expect = 7e-17
 Identities = 76/483 (15%), Positives = 153/483 (31%), Gaps = 61/483 (12%)

Query: 60  SDETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTP--------------- 104
            +  D   A+  +  L   + + E +  I  +G +PALV+ L +P               
Sbjct: 69  QNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNL 128

Query: 105 -----------------PQLTNAQIPYEHEVEKECAFALGLL-AVKPEHQQIIVDTGALP 146
                             ++         +        L +L     E + II+ +G   
Sbjct: 129 LLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQ 188

Query: 147 HLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVD 206
            LV++++ Y            +      +  +    ++ K  +    G+  L   L    
Sbjct: 189 ALVNIMRTYTYEK--------LLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS 240

Query: 207 VKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSS 266
            ++ +     LR L+   D   K       L TLV +L S+D +V   A G++ NL  ++
Sbjct: 241 QRLVQNCLWTLRNLS---DAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN 297

Query: 267 PSIKKEVILAGALQPVIGLLSS-SCSESKREAALLLGQFAAADSNSKVHIV----QRGAV 321
              K  V   G ++ ++  +      E   E A+   +   +                 +
Sbjct: 298 YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGL 357

Query: 322 RPLIEMLQSPD-SQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNA 380
             ++++L  P    L + +   +  LA    N A + + G I  L++LL   +   Q   
Sbjct: 358 PVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRT 417

Query: 381 AFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLL 440
           +         E    + +  G    L             +AR +           +   +
Sbjct: 418 SMGGTQQQFVEGVRMEEIVEGCTGALHI-----------LARDVHNRIVIRGLNTIPLFV 466

Query: 441 YLLRVADRAVKRRVTLALAHLCAPDDCKTIFIDNNGLELLLGLLESTSVKQREESSVALY 500
            LL      ++R     L  L    +             L  LL S +      ++  L+
Sbjct: 467 QLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLF 526

Query: 501 KLA 503
           +++
Sbjct: 527 RMS 529

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.5 bits (199), Expect = 1e-16
 Identities = 85/497 (17%), Positives = 158/497 (31%), Gaps = 65/497 (13%)

Query: 47  IRAQIDILNSKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDN-GAVPALVEHLQTPP 105
           I     +LN +         AA      + + +K E     I+ +   V A+V  +Q   
Sbjct: 19  IPELTKLLNDE--DQVVVNKAAV----MVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTN 72

Query: 106 QLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALS 165
            +         E  +  A  L  L+   E    I  +G +P LV +L           + 
Sbjct: 73  DV---------ETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGS--------PVD 115

Query: 166 GVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKND 225
            V+  A   + NL       K  VR+  G+  +V LL   +VK        L+ LA+ N 
Sbjct: 116 SVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQ 175

Query: 226 ENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGL 285
           E+K +I+       LV ++R+            +  ++    S K  ++ AG +Q +   
Sbjct: 176 ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLH 235

Query: 286 LSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKE-MSAFALG 344
           L+       +               +       G +  L+++L S D  +    +     
Sbjct: 236 LTDPSQRLVQNCL---WTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSN 292

Query: 345 RLAQDTHNQAGIAQDGGILPLLKLLDS---------------KNGSLQHNAAFALYGLAD 389
               +  N+  + Q GGI  L++ +                 ++ + +H  A        
Sbjct: 293 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVR 352

Query: 390 NEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRA 449
               +  +V++                   +A              +  L+ LL  A + 
Sbjct: 353 LHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQD 412

Query: 450 VKRR----------------------VTLALAHLCAPDDCKTIFIDNNGLELLLGLLEST 487
            +RR                       T AL  L      + +    N + L + LL S 
Sbjct: 413 TQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSP 472

Query: 488 SVKQREESSVALYKLAT 504
               +  ++  L +LA 
Sbjct: 473 IENIQRVAAGVLCELAQ 489

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.2 bits (193), Expect = 5e-16
 Identities = 48/269 (17%), Positives = 94/269 (34%), Gaps = 19/269 (7%)

Query: 91  NGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVK-PEHQQIIVDTGALPHLV 149
             A+P L + L    Q           V  + A  +  L+ K      I+     +  +V
Sbjct: 16  TRAIPELTKLLNDEDQ----------VVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIV 65

Query: 150 SLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKV 209
             ++   +           R  A  + NL+H    +    +   GIP LV++L      V
Sbjct: 66  RTMQNTND-------VETARCTAGTLHNLSHHREGLLAIFK-SGGIPALVKMLGSPVDSV 117

Query: 210 QRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSI 269
              A   L  L    +  K  +     L  +V +L   +          +  L + +   
Sbjct: 118 LFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQES 177

Query: 270 KKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQ 329
           K  ++ +G  Q ++ ++ +   E        + +  +  S++K  IV+ G ++ L   L 
Sbjct: 178 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLT 237

Query: 330 SPDSQLKEMSAFALGRLAQDTHNQAGIAQ 358
            P  +L +   + L  L+     Q G+  
Sbjct: 238 DPSQRLVQNCLWTLRNLSDAATKQEGMEG 266

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.2 bits (180), Expect = 2e-14
 Identities = 46/269 (17%), Positives = 92/269 (34%), Gaps = 12/269 (4%)

Query: 274 ILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSP-D 332
           +   A+  +  LL+        +AA+++ Q +  +++    +     V  ++  +Q+  D
Sbjct: 14  LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTND 73

Query: 333 SQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNED 392
            +    +A  L  L+        I + GGI  L+K+L S   S+   A   L+ L  +++
Sbjct: 74  VETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQE 133

Query: 393 NVADLVRVGG-----VQKLQDGEFTVQPTKDCVARTLK------RLEEKVHGRVLNHLLY 441
                VR+ G     V  L               + L       +L     G     +  
Sbjct: 134 GAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNI 193

Query: 442 LLRVADRAVKRRVTLALAHLCAPDDCKTIFIDNNGLELLLGLLESTSVKQREESSVALYK 501
           +       +    +  L  L      K   ++  G++ L   L   S +  +     L  
Sbjct: 194 MRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRN 253

Query: 502 LATKATSLSPMDAAPPSPTQQVYLGEQFV 530
           L+  AT    M+    +  Q +   +  V
Sbjct: 254 LSDAATKQEGMEGLLGTLVQLLGSDDINV 282

>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 121

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.5 bits (211), Expect = 1e-20
 Identities = 25/100 (25%), Positives = 44/100 (44%), Gaps = 5/100 (5%)

Query: 527 EQFVNNPTLSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNV 586
            Q     TL DV  +V+ ++F+AHR  L  +S  F  +F    +        +  +    
Sbjct: 20  NQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRNSQ-----HYTLDFLSPKT 74

Query: 587 FELMMRFIYTGNVDVSVDIAQDLLRAADQYLLEGLKRLCE 626
           F+ ++ + YT  +    +   DLL AA+   +E L+  C 
Sbjct: 75  FQQILEYAYTATLQAKAEDLDDLLYAAEILEIEYLEEQCL 114

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 89.1 bits (219), Expect = 2e-19
 Identities = 79/400 (19%), Positives = 153/400 (38%), Gaps = 47/400 (11%)

Query: 52  DILNSKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTP------- 104
           DI+    S++   +  A  A+  L+   K   I   I+  G +P  V  L          
Sbjct: 17  DIVKGINSNNLESQLQATQAARKLLSREKQPPID-NIIRAGLIPKFVSFLGKTDCSPIQF 75

Query: 105 --------------------------PQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQ 137
                                     P   +        + ++  +ALG +A      + 
Sbjct: 76  ESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRD 135

Query: 138 IIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPP 197
           +++  GA+  L++LL        +    G +R     ++NL            VE  +P 
Sbjct: 136 LVIKHGAIDPLLALLAVPDLSTLA---CGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPT 192

Query: 198 LVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVG 257
           LV LL   D +V   +  A+  L    +E  +++V+   +P LV +L + +  +   A+ 
Sbjct: 193 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR 252

Query: 258 VIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQ 317
            IGN+V  +    ++VI AGAL     LL++  +  ++EA   +    A   +    +V 
Sbjct: 253 AIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVN 312

Query: 318 RGAVRPLIEMLQSPDSQLKEMSAFALGRLAQ--DTHNQAGIAQDGGILPLLKLLDSKNGS 375
            G V  L+ +L   D + ++ +A+A+              +   G I PL+ LL +K+  
Sbjct: 313 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 372

Query: 376 LQHNAAFALYGLADNEDNVAD-------LVRVGGVQKLQD 408
           +      A+  +    + + +       +   GG+ K++ 
Sbjct: 373 IIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEA 412

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 85.2 bits (209), Expect = 4e-18
 Identities = 62/337 (18%), Positives = 137/337 (40%), Gaps = 19/337 (5%)

Query: 191 VEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENK-KLIVECNALPTLV-LMLRSED 248
           V   +  +V+ +   +++ Q  A  A R L  +  +     I+    +P  V  + +++ 
Sbjct: 11  VNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDC 70

Query: 249 ASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAAD 308
           + + FE+   + N+   +    K V+  GA+   I LL+S  +    +A   LG  A   
Sbjct: 71  SPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDG 130

Query: 309 SNSKVHIVQRGAVRPLIEMLQSPDSQLKEMS-----AFALGRLAQDTHNQAGIAQDGGIL 363
           S  +  +++ GA+ PL+ +L  PD             + L  L ++ +    +     IL
Sbjct: 131 SAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQIL 190

Query: 364 PLL-KLLDSKNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEF----------T 412
           P L +LL   +  +  ++ +A+  L D  +   ++V   GV                   
Sbjct: 191 PTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPA 250

Query: 413 VQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPD-DCKTIF 471
           ++   + V  T ++ ++ +    L     LL      +++  T  ++++ A   D     
Sbjct: 251 LRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQV 310

Query: 472 IDNNGLELLLGLLESTSVKQREESSVALYKLATKATS 508
           +++  +  L+G+L     K ++E++ A+    +  T 
Sbjct: 311 VNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTV 347

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 84.1 bits (206), Expect = 9e-18
 Identities = 72/389 (18%), Positives = 139/389 (35%), Gaps = 28/389 (7%)

Query: 142 TGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLA-HENANIKTRVRVEDGIPPLVE 200
             ++  +V  +    N  N         +A  A   L   E       +     IP  V 
Sbjct: 12  NWSVEDIVKGI----NSNNLE----SQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVS 63

Query: 201 LLKFVD-VKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVI 259
            L   D   +Q  +A AL  +A    E  K +V+  A+P  + +L S  A +  +AV  +
Sbjct: 64  FLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWAL 123

Query: 260 GNLVHSSPSIKKEVILAGALQPVIGLL-----SSSCSESKREAALLLGQFAAADSNSKVH 314
           GN+     + +  VI  GA+ P++ LL     S+      R     L       + +   
Sbjct: 124 GNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPL 183

Query: 315 IVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPL-LKLLDSKN 373
                 +  L+ +L   D ++   S +A+  L    + +  +    G++P  +KLL +  
Sbjct: 184 DAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATE 243

Query: 374 GSLQHNAAFALYGLADNEDNVADLVRVGG-----VQKLQDGEFTVQPTKD-----CVART 423
             +   A  A+  +    D     V   G        L + +  +Q           A  
Sbjct: 244 LPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGR 303

Query: 424 LKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLC--APDDCKTIFIDNNGLELLL 481
             ++++ V+  ++  L+ +L  AD   ++    A+ +       +     +    +E L+
Sbjct: 304 QDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLM 363

Query: 482 GLLESTSVKQREESSVALYKLATKATSLS 510
            LL +   K  +    A+  +   A  L 
Sbjct: 364 NLLSAKDTKIIQVILDAISNIFQAAEKLG 392

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.1 bits (113), Expect = 1e-06
 Identities = 33/205 (16%), Positives = 69/205 (33%), Gaps = 13/205 (6%)

Query: 313 VHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLL-KLLDS 371
           + ++ +       E  Q+ D Q +E +   L  L ++  N A   Q  G+  L+ + L++
Sbjct: 11  LRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEA 70

Query: 372 KNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTL------- 424
               L+  AA  +   + N   + + V   G  +                + L       
Sbjct: 71  GAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLV 130

Query: 425 ----KRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPDDC-KTIFIDNNGLEL 479
                 L + +     + L+  ++   + +K +    L +L       K        ++ 
Sbjct: 131 REQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQ 190

Query: 480 LLGLLESTSVKQREESSVALYKLAT 504
           L+ L+ +      E    AL  L T
Sbjct: 191 LVALVRTEHSPFHEHVLGALCSLVT 215

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.5 bits (101), Expect = 5e-05
 Identities = 19/125 (15%), Positives = 51/125 (40%), Gaps = 3/125 (2%)

Query: 231 IVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIG-LLSSS 289
           ++     PT     ++ D      A+ ++ +L  +  +   +      +  ++G  L + 
Sbjct: 13  VLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDN-AADFCQLSGMHLLVGRYLEAG 71

Query: 290 CSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQS-PDSQLKEMSAFALGRLAQ 348
            +  +  AA L+G  +   +  +  ++  GA+R L+ +L       ++  + FA+  L +
Sbjct: 72  AAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVR 131

Query: 349 DTHNQ 353
           +    
Sbjct: 132 EQEAG 136

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (97), Expect = 1e-04
 Identities = 29/233 (12%), Positives = 58/233 (24%), Gaps = 50/233 (21%)

Query: 61  DETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEK 120
              D+   + A   L +  +N +  +       +  LV                   +  
Sbjct: 27  QAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAG---------AAGLRW 77

Query: 121 ECAFALG-LLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRAL--------------- 164
             A  +G         Q+ ++  GAL  L+ LL +                         
Sbjct: 78  RAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGL 137

Query: 165 --------------------SGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKF 204
                                 +  ++A  + NL   +   K  +     +  LV L++ 
Sbjct: 138 LQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRT 197

Query: 205 VDVKVQRAAAGALRTLAFKNDENKKLIVEC-----NALPTLVLMLRSEDASVH 252
                     GAL +L     +  +   E        L     +L+  +    
Sbjct: 198 EHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQE 250

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (108), Expect = 8e-06
 Identities = 23/153 (15%), Positives = 52/153 (33%), Gaps = 2/153 (1%)

Query: 217 LRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILA 276
                 K      L      L   +      D    +      G  +    +  ++ I+ 
Sbjct: 305 PPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVP 364

Query: 277 GALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLK 336
             L  +   + +     +  A +  G        S++  +   A+  LIE+++ P   ++
Sbjct: 365 HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVR 424

Query: 337 EMSAFALGRLAQDTHNQAGIAQDGGILPLLKLL 369
           + +A+ +GR+ +     A       + PLL+ L
Sbjct: 425 DTAAWTVGRICELLPEAAINDVY--LAPLLQCL 455

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (98), Expect = 2e-04
 Identities = 35/201 (17%), Positives = 72/201 (35%), Gaps = 15/201 (7%)

Query: 195 IPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFE 254
           +  +++LL+  + +VQ  A   L  L  K  E          + TL   + S+   +   
Sbjct: 47  VKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY----QVETIVDTLCTNMLSDKEQLRDI 102

Query: 255 AVGVIGNLVHSSPSIKKEVILAGALQPVI-GLLSSSCSES-----KREAALLLGQFAAAD 308
           +   +  ++   P       LA  +   I G L+S+ ++      + EA  ++    +  
Sbjct: 103 SSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQ 162

Query: 309 SNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLK- 367
               +       +  L+  L SP   +++ +  ALG L     N   +     I  LL  
Sbjct: 163 GGL-LVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDL---IEHLLSE 218

Query: 368 LLDSKNGSLQHNAAFALYGLA 388
           L  + + S        +  ++
Sbjct: 219 LSKNDSMSTTRTYIQCIAAIS 239

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 0.002
 Identities = 39/202 (19%), Positives = 71/202 (35%), Gaps = 13/202 (6%)

Query: 320 AVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILP-LLKLLDSKNGSLQH 378
            +  L+E + S D   + M+   L    Q    +     +  ++  +LKLL+ KNG +Q+
Sbjct: 4   HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQN 63

Query: 379 NAAFALYGLADN--EDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVL 436
            A   L  L     E  V  +V       L D E     +   +   +  L     G  L
Sbjct: 64  LAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSAL 123

Query: 437 NHLL----------YLLRVADRAVKRRVTLALAHLCAPDDCKTIFIDNNGLELLLGLLES 486
              +           + +  D +V+      +A + +      +    + L  LL  L S
Sbjct: 124 AANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTS 183

Query: 487 TSVKQREESSVALYKLATKATS 508
             +  R+ + +AL  L     +
Sbjct: 184 PRLAVRKRTIIALGHLVMSCGN 205

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (88), Expect = 0.003
 Identities = 29/195 (14%), Positives = 58/195 (29%), Gaps = 28/195 (14%)

Query: 27   PDRKVSIVESGATQQDLVQDIRAQIDILNSKFSSDETDRAAAKTASHALVEFAKNEEIVS 86
            P  +V    S A     V ++   +  +  + +S    +     +   ++  A    +  
Sbjct: 865  PSEEVKSAASYALGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKP 924

Query: 87   LIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALP 146
             +        L++H +            E       A  LG L +       I     LP
Sbjct: 925  YV--ENIWALLLKHCECA----------EEGTRNVVAECLGKLTL-------IDPETLLP 965

Query: 147  HLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVD 206
             L   L      G+S       R +          +        +++ I   ++ L+  D
Sbjct: 966  RLKGYLIS----GSSY-----ARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPD 1016

Query: 207  VKVQRAAAGALRTLA 221
            + V+R A     + A
Sbjct: 1017 LNVRRVALVTFNSAA 1031

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (97), Expect = 3e-04
 Identities = 31/161 (19%), Positives = 56/161 (34%), Gaps = 14/161 (8%)

Query: 192 EDGIPPLVELLKFV---DVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSED 248
           E G+  +++LLK     D  +QR     L  L    D N       N L  ++  L+SED
Sbjct: 7   EQGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFN-------NYLIFVLTKLKSED 59

Query: 249 ASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAAD 308
                 +  ++ N V +        +        +  +  S    +    +L+   A+  
Sbjct: 60  EPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKG 119

Query: 309 SNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQD 349
                       +  L  +L S D    E +  AL ++ +D
Sbjct: 120 ELQNWP----DLLPKLCSLLDSEDYNTCEGAFGALQKICED 156

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Length = 233

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

 Score = 40.1 bits (93), Expect = 4e-04
 Identities = 33/183 (18%), Positives = 57/183 (31%), Gaps = 17/183 (9%)

Query: 178 LAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGAL---RTLAFKNDENKKLIVEC 234
           LA      +        +  L  L++  D  V+RA A  L   +  A   DE++++ +  
Sbjct: 51  LADPFWERRAIAVRYSPVEALTPLIRDSDEVVRRAVAYRLPREQLSALMFDEDREVRITV 110

Query: 235 N---ALPTLVLMLRSEDASVHFEAVG------VIGNLVHSSPSIKKEVILAGALQPVIGL 285
                L  L  M    D  V    V       +   +      ++K V      + +  +
Sbjct: 111 ADRLPLEQLEQMAADRDYLVRAYVVQRIPPGRLFRFMRDEDRQVRKLVAKRLPEESLGLM 170

Query: 286 LSSSCSESKREAALLLGQ----FAAADSNSKV-HIVQRGAVRPLIEMLQSPDSQLKEMSA 340
                 E +R  A  L          D +  V       A    +  L  PD +++   A
Sbjct: 171 TQDPEPEVRRIVASRLRGDDLLELLHDPDWTVRLAAVEHASLEALRELDEPDPEVRLAIA 230

Query: 341 FAL 343
             L
Sbjct: 231 GRL 233

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 0.002
 Identities = 25/139 (17%), Positives = 48/139 (34%), Gaps = 11/139 (7%)

Query: 210 QRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSI 269
           + AA   L+ L  K  +          +P ++ M    +       +  I  L   S   
Sbjct: 458 REAATSNLKKLVEKFGKEW---AHATIIPKVLAMSGDPNYLHRMTTLFCINVL---SEVC 511

Query: 270 KKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQ 329
            +++     L  V+ +     +  +   A  L +      NS +       V+P++E L 
Sbjct: 512 GQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQ----SEVKPILEKLT 567

Query: 330 -SPDSQLKEMSAFALGRLA 347
              D  +K  +  AL  L+
Sbjct: 568 QDQDVDVKYFAQEALTVLS 586

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

 Score = 37.5 bits (85), Expect = 0.004
 Identities = 19/153 (12%), Positives = 41/153 (26%), Gaps = 10/153 (6%)

Query: 305 AAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILP 364
            A+      +  ++     L  +L   +S  +  SA  L                  +  
Sbjct: 5   KASKEYGLYNQCKKLNDDELFRLLDDHNSLKRISSARVLQL----------RGGQDAVRL 54

Query: 365 LLKLLDSKNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTL 424
            ++    KN   +   AF L  +   +    ++  +     L D    V+ T        
Sbjct: 55  AIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALNDKSACVRATAIESTAQR 114

Query: 425 KRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLA 457
            +       +++             V+R    A
Sbjct: 115 CKKNPIYSPKIVEQSQITAFDKSTNVRRATAFA 147

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	704
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	100.0
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	100.0
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.97
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.96
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1r29a_	122	B-cell lymphoma 6 (Bcl6) protein BTB domain {Human	99.87
d1buoa_	121	Promyelocytic leukaemia zinc finger (PLZF) protein	99.86
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.8
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.8
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.56
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.52
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.39
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.37
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.14
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.04
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.02
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.02
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.94
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	98.9
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	98.9
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	98.85
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.74
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.65
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	98.62
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	98.62
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	98.58
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.56
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	98.55
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.3
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.06
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.03
d2c9wc1	96	Elongin C {Human (Homo sapiens) [TaxId: 9606]}	97.95
d1hv2a_	99	Elongin C {Baker's yeast (Saccharomyces cerevisiae	97.88
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	97.01
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	96.95
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	96.84
d1nn7a_	105	Potassium channel kv4.2 {Rat (Rattus norvegicus) [	96.78
d3kvta_	103	akv3.1 voltage-gated potassium channel {California	96.61
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	96.51
d1t1da_	100	Shaker potassium channel {California sea hare (Apl	96.24
d1nexa2	72	Centromere DNA-binding protein complex Cbf3 subuni	95.64
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	95.57
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	95.47
d1fs1b2	61	Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa	94.9
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	93.37
d1fs1b1	55	Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa	92.31
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	91.77
d1nexa1	70	Centromere DNA-binding protein complex Cbf3 subuni	90.07
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	85.27

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.9e-34  Score=308.68  Aligned_cols=433  Identities=19%  Similarity=0.220  Sum_probs=362.0

Q ss_pred             HHHHHHhhhccCCchhhHHHHHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHH
Q 005282           48 RAQIDILNSKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALG  127 (704)
Q Consensus        48 ~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~  127 (704)
                      +.+++.|..++...+ +...+..++.+|.+++.+++.+..+++.|+++.|+.+|++++.          +++..|+++|+
T Consensus        58 ~~~v~~l~~~L~~~~-~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Li~lL~~~~~----------~v~~~a~~aL~  126 (529)
T d1jdha_          58 PQMVSAIVRTMQNTN-DVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVD----------SVLFYAITTLH  126 (529)
T ss_dssp             HHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCH----------HHHHHHHHHHH
T ss_pred             hhHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhCCchhHHHHHHCCCHHHHHHHhCCCCH----------HHHHHHHHHHH
Confidence            344555555553222 3346888999999999999999999999999999999998754          99999999999


Q ss_pred             hhc-CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcC-C
Q 005282          128 LLA-VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKF-V  205 (704)
Q Consensus       128 ~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~  205 (704)
                      +++ +++..+..+.+.|+++.|+.+|++.+.        +++..++++|.+++..++..+..+...|+++.|+.++.+ +
T Consensus       127 ~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~--------~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~  198 (529)
T d1jdha_         127 NLLLHQEGAKMAVRLAGGLQKMVALLNKTNV--------KFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT  198 (529)
T ss_dssp             HHHHHCTTHHHHHHHHTHHHHHHHGGGCCCH--------HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCC
T ss_pred             HhhcccchhhhHHHhcCCchHHHHHHHccCh--------HHHHHHHHHHHHHhhhhhHHHHHHHhcccchHHHHHHHhhh
Confidence            999 788889999999999999999987665        999999999999998888888999999999999999974 5


Q ss_pred             CHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHH
Q 005282          206 DVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGL  285 (704)
Q Consensus       206 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~l  285 (704)
                      +..++..+++++.+++. +++++..+.+.|+++.|+.++.+++..++..+++++.+++.....   .....|+++.|+.+
T Consensus       199 ~~~~~~~~~~~l~~ls~-~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~---~~~~~~~i~~Lv~l  274 (529)
T d1jdha_         199 YEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK---QEGMEGLLGTLVQL  274 (529)
T ss_dssp             CHHHHHHHHHHHHHHTT-STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTT---CSCCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhhhhc-cccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhccccccc---hhhhhhcchhhhhh
Confidence            57899999999999996 788999999999999999999999999999999999999855332   12234679999999


Q ss_pred             hcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhC--CCCHHHHHHHHHHHHHhhcCCch----hhhHHhh
Q 005282          286 LSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQ--SPDSQLKEMSAFALGRLAQDTHN----QAGIAQD  359 (704)
Q Consensus       286 l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~----~~~~~~~  359 (704)
                      +.+++..++..++.+|++++..++.++..+.+.++++.|+..+.  ++.+.+++.++++|++++.....    +..+...
T Consensus       275 l~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~  354 (529)
T d1jdha_         275 LGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLH  354 (529)
T ss_dssp             TTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHT
T ss_pred             cccccHHHHHHHHHHHHhhccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhhcccchhhcchhhhhhHHhc
Confidence            99999999999999999999877788888889999999999884  46688999999999999976543    3446678


Q ss_pred             CChHHHHHhhcCC-ChhHHHHHHHHHHHcccCCchhhHHHhhCCccccccccccccc-----------------------
Q 005282          360 GGILPLLKLLDSK-NGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQP-----------------------  415 (704)
Q Consensus       360 ~~~~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~-----------------------  415 (704)
                      ++++.++.++..+ +..++..++++|.+++.+++++..+.+.|+++.+++.......                       
T Consensus       355 ~~l~~L~~ll~~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (529)
T d1jdha_         355 YGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEE  434 (529)
T ss_dssp             TCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHH
T ss_pred             ccchhHHHHHhccchHHHHHHHHHHHhhcchhhhhhhhhhhcccHHHHHHHHhcCCHHHHHHHHhhhhhHHhhcccchHH
Confidence            9999999999764 4568889999999999999999999999999887643211100                       


Q ss_pred             chHHHHHHHHHHH-------HHhhcchhHHHHHHHhhccHHHHHHHHHHHHhccCCCccceeeecCCcHHHHHHHHhhcc
Q 005282          416 TKDCVARTLKRLE-------EKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPDDCKTIFIDNNGLELLLGLLESTS  488 (704)
Q Consensus       416 ~~~~~~~~~~~~~-------~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~  488 (704)
                      ........+....       .....+.++.|+.++.++++.++..++++|++|+.+++.+..+.+.||++.|++++.+++
T Consensus       435 ~~~~~~~al~~la~~~~~r~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~~~~L~~Ll~s~n  514 (529)
T d1jdha_         435 IVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRN  514 (529)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSS
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcChhhHHHHHHCCCHHHHHHHhCCCC
Confidence            0111111121111       111456789999999999999999999999999988888888899999999999999999


Q ss_pred             hhhhhhHHHHHHHHh
Q 005282          489 VKQREESSVALYKLA  503 (704)
Q Consensus       489 ~~~~~~a~~~L~~L~  503 (704)
                      +.++..|+.+|.+|+
T Consensus       515 ~~v~~~a~~aL~~ls  529 (529)
T d1jdha_         515 EGVATYAAAVLFRMS  529 (529)
T ss_dssp             HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhC
Confidence            999999999999874

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.5e-31  Score=288.49  Aligned_cols=388  Identities=20%  Similarity=0.272  Sum_probs=328.9

Q ss_pred             HHHHHHHHHHHHHhhc--ChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHHHHH
Q 005282           65 RAAAKTASHALVEFAK--NEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQIIVD  141 (704)
Q Consensus        65 ~~~~~~a~~~L~~l~~--~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~~~  141 (704)
                      ...+..++..+.++..  .....+.+++.|++|.|+++++.+.+         ++++..|+++|++++ .++.....+.+
T Consensus        90 ~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~---------~~iq~~a~~~L~ni~~~~~~~~~~~~~  160 (503)
T d1wa5b_          90 MQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQP---------EMLQLEAAWALTNIASGTSAQTKVVVD  160 (503)
T ss_dssp             HHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSC---------HHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCC---------HHHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence            3345678888877653  23344778899999999999987653         589999999999999 77888889999


Q ss_pred             cCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 005282          142 TGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLA  221 (704)
Q Consensus       142 ~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~  221 (704)
                      .|+++.++.+|.+.+.        +++..++|+|+|++.+++..+..+...|+++.|+.++.+.++.++..+++++.+++
T Consensus       161 ~g~i~~l~~lL~s~~~--------~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~  232 (503)
T d1wa5b_         161 ADAVPLFIQLLYTGSV--------EVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLC  232 (503)
T ss_dssp             TTCHHHHHHHHHHCCH--------HHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHH
T ss_pred             CCChHHHHHHhcCCCh--------hHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHh
Confidence            9999999999998765        99999999999999988999999999999999999999999999999999999999


Q ss_pred             cCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHH
Q 005282          222 FKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLL  301 (704)
Q Consensus       222 ~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L  301 (704)
                      .+.+.........++++.++.++.+++++++..++++|.+++..++.....+.+.|+++.++.++.+++..++..++.++
T Consensus       233 ~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l  312 (503)
T d1wa5b_         233 RGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAV  312 (503)
T ss_dssp             CCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred             cCCccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHH
Confidence            75555555556678899999999999999999999999999988888888899999999999999999999999999999


Q ss_pred             HHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCch-hhhHHhhCChHHHHHhhcCCChhHHHHH
Q 005282          302 GQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHN-QAGIAQDGGILPLLKLLDSKNGSLQHNA  380 (704)
Q Consensus       302 ~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~~~L~~ll~~~~~~v~~~a  380 (704)
                      ++++.+.+.....+.+.|+++.|..++.++++.++..++++|+|++.+.+. ...+.+.|+++.++.++.+.+..++..|
T Consensus       313 ~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a  392 (503)
T d1wa5b_         313 GNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEA  392 (503)
T ss_dssp             HHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhhccHHHHHHHHHccccchhHHhcccCChhHHHHH
Confidence            999987777777888899999999999999999999999999999987654 4556788999999999999999999999


Q ss_pred             HHHHHHcccC----CchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHHHHH
Q 005282          381 AFALYGLADN----EDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTL  456 (704)
Q Consensus       381 ~~~L~~l~~~----~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~  456 (704)
                      +++|.+++..    ++....+++.|++                                 +.++.++...++.+...++.
T Consensus       393 ~~~l~nl~~~~~~~~~~~~~l~~~~~l---------------------------------~~l~~~L~~~d~~~~~~~L~  439 (503)
T d1wa5b_         393 CWAISNASSGGLQRPDIIRYLVSQGCI---------------------------------KPLCDLLEIADNRIIEVTLD  439 (503)
T ss_dssp             HHHHHHHHHHTTTCTHHHHHHHHTTCH---------------------------------HHHHHHTTTCCHHHHHHHHH
T ss_pred             HHHHHHHHhcccccHHHHHHHHHCCcH---------------------------------HHHHHHhcCCCHHHHHHHHH
Confidence            9999999852    2344556666654                                 45667777788888888787


Q ss_pred             HHHhccC------------CCccceeeecCCcHHHHHHHHhhcchhhhhhHHHHHHHH
Q 005282          457 ALAHLCA------------PDDCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKL  502 (704)
Q Consensus       457 ~L~~l~~------------~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L  502 (704)
                      +|.++-.            .......+.+.||+..|..+..+++.+++..|...|...
T Consensus       440 ~l~~ll~~~~~~~~~~~~~~~~~~~~iee~g~~~~i~~Lq~~~~~~i~~~A~~il~~~  497 (503)
T d1wa5b_         440 ALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETY  497 (503)
T ss_dssp             HHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcccchHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            7777621            122334566789999988887789999998888877553

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.9e-31  Score=282.17  Aligned_cols=400  Identities=20%  Similarity=0.286  Sum_probs=335.8

Q ss_pred             HHHHHHHHhhhccCCchhhHHHHHHHHHHHHHhhc-C-hhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHH
Q 005282           46 DIRAQIDILNSKFSSDETDRAAAKTASHALVEFAK-N-EEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECA  123 (704)
Q Consensus        46 ~~~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~-~-~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~  123 (704)
                      .+++++..+.+      ++...+..|+..+.++.. + ......+++.|++|.|+++|++.+         +++++..|+
T Consensus        14 ~i~~lv~~l~s------~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~---------~~~v~~~a~   78 (434)
T d1q1sc_          14 SVEDIVKGINS------NNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTD---------CSPIQFESA   78 (434)
T ss_dssp             CHHHHHHHHTS------SCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGG---------GHHHHHHHH
T ss_pred             hHHHHHHHHcC------CCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCC---------CHHHHHHHH
Confidence            35566665433      445567788888887654 2 222467789999999999997654         358999999


Q ss_pred             HHHHhhc-CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHh
Q 005282          124 FALGLLA-VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELL  202 (704)
Q Consensus       124 ~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll  202 (704)
                      ++|.+++ .+++.+..+.+.|+++.++.+|.+++.        ++++.++++|++++.+++..+..+...|+++.++.++
T Consensus        79 ~~L~~la~~~~~~~~~i~~~~~i~~l~~~L~~~~~--------~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l  150 (434)
T d1q1sc_          79 WALTNIASGTSEQTKAVVDGGAIPAFISLLASPHA--------HISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL  150 (434)
T ss_dssp             HHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCH--------HHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHT
T ss_pred             HHHHHHhcCChhhhhHhhhccchhhhhhccccCCH--------HHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHH
Confidence            9999999 778889999999999999999988665        9999999999999998889999999999999999999


Q ss_pred             cCCC-----HHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcC
Q 005282          203 KFVD-----VKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAG  277 (704)
Q Consensus       203 ~~~~-----~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~  277 (704)
                      ...+     ......+.+++.+++.+...........++++.+..++.+++++++..++++|.+++..++.....+...|
T Consensus       151 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~  230 (434)
T d1q1sc_         151 AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKG  230 (434)
T ss_dssp             CSSCGGGSCHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTT
T ss_pred             HhcccccchHHHHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcc
Confidence            8543     35567788999999876555555555677899999999999999999999999999988777778788899


Q ss_pred             CHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCch-hhhH
Q 005282          278 ALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHN-QAGI  356 (704)
Q Consensus       278 ~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~-~~~~  356 (704)
                      +++.++.++.+++.+++..++.+|.+++..++.....+.+.|+++.|+.++.+++++++..++++|++++.+... ...+
T Consensus       231 ~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i  310 (434)
T d1q1sc_         231 VVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQV  310 (434)
T ss_dssp             CHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred             cchhcccccccchhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcccchhhhHHHHHHHhhhccccchhHHHH
Confidence            999999999999999999999999999987777788889999999999999999999999999999999987655 4456


Q ss_pred             HhhCChHHHHHhhcCCChhHHHHHHHHHHHccc--CCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcc
Q 005282          357 AQDGGILPLLKLLDSKNGSLQHNAAFALYGLAD--NEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGR  434 (704)
Q Consensus       357 ~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (704)
                      .+.|+++.+++++.+.+++++..|+++|.+++.  +++....+.+.|+++                              
T Consensus       311 ~~~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~------------------------------  360 (434)
T d1q1sc_         311 VNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIE------------------------------  360 (434)
T ss_dssp             HHTTCHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHH------------------------------
T ss_pred             hhhhhHHHHHHHHhccChHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHH------------------------------
Confidence            778999999999999999999999999999985  455666777766644                              


Q ss_pred             hhHHHHHHHhhccHHHHHHHHHHHHhccC-------CCccceeeecCCcHHHHHHHHhhcchhhhhhHHHHHHH
Q 005282          435 VLNHLLYLLRVADRAVKRRVTLALAHLCA-------PDDCKTIFIDNNGLELLLGLLESTSVKQREESSVALYK  501 (704)
Q Consensus       435 ~~~~L~~ll~~~~~~v~~~a~~~L~~l~~-------~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~  501 (704)
                         .|+.++.++++.+...++++|.++..       .+..+..+.+.||++.|..+..+++++++..|...|.+
T Consensus       361 ---~L~~ll~~~d~~~~~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~n~~i~~~a~~il~~  431 (434)
T d1q1sc_         361 ---PLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEK  431 (434)
T ss_dssp             ---HHHHHTTSSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTSHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred             ---HHHHHhcCCCHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence               46778888999999999999988832       12234566788999999888888999999999887754

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-31  Score=289.59  Aligned_cols=442  Identities=21%  Similarity=0.233  Sum_probs=359.6

Q ss_pred             chhhHHHHHHHHHHHHhhhccCCchhhHHHHHHHHHHHHHhhcChhHHHHHHhC-CChHHHHhhccCCCcCCCCCCCCch
Q 005282           38 ATQQDLVQDIRAQIDILNSKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDN-GAVPALVEHLQTPPQLTNAQIPYEH  116 (704)
Q Consensus        38 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~-g~i~~L~~lL~~~~~~~~~~~~~d~  116 (704)
                      ++..-..+.+|.++..|..      ++..++.+|+..+.+++.++..+..++.. |+++.|+.+|.+.+.         +
T Consensus        10 ~~~~~~~~aip~L~~lL~~------~~~~v~~~A~~~l~~l~~~~~~~~~~~~~~~~v~~l~~~L~~~~~---------~   74 (529)
T d1jdha_          10 DDAELATRAIPELTKLLND------EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTND---------V   74 (529)
T ss_dssp             -------CHHHHHHHHHTC------SCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCC---------H
T ss_pred             ccHHHHHHHHHHHHHHHcC------CCHHHHHHHHHHHHHHHhccHHHHHHHHhhhHHHHHHHHHcCCCC---------H
Confidence            3334445667877777643      44568999999999999987777777765 789999999987653         5


Q ss_pred             HHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcH
Q 005282          117 EVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIP  196 (704)
Q Consensus       117 ~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~  196 (704)
                      +++..|+.+|.+++.+++.+..+++.|+++.|+.+|++.+.        +++..|+++|++++.+++..+..+.+.|+++
T Consensus        75 ~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Li~lL~~~~~--------~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~  146 (529)
T d1jdha_          75 ETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVD--------SVLFYAITTLHNLLLHQEGAKMAVRLAGGLQ  146 (529)
T ss_dssp             HHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCH--------HHHHHHHHHHHHHHHHCTTHHHHHHHHTHHH
T ss_pred             HHHHHHHHHHHHHhCCchhHHHHHHCCCHHHHHHHhCCCCH--------HHHHHHHHHHHHhhcccchhhhHHHhcCCch
Confidence            89999999999999999999999999999999999987655        9999999999999998898899999999999


Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcC-CCHHHHHHHHHHHHHHhcCChhhHHHHHH
Q 005282          197 PLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRS-EDASVHFEAVGVIGNLVHSSPSIKKEVIL  275 (704)
Q Consensus       197 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~  275 (704)
                      .|+.+++++++.++..+++++.+++..+++.+..+...|+++.++.++.+ +...++..+++++.+++.. ++.+..+.+
T Consensus       147 ~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~-~~~~~~~~~  225 (529)
T d1jdha_         147 KMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVE  225 (529)
T ss_dssp             HHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-TTHHHHHHH
T ss_pred             HHHHHHHccChHHHHHHHHHHHHHhhhhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhcc-ccccchhhh
Confidence            99999999999999999999999998788888889999999999999974 5678999999999999865 677888999


Q ss_pred             cCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC-chhh
Q 005282          276 AGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDT-HNQA  354 (704)
Q Consensus       276 ~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~  354 (704)
                      .|+++.|+.++.+++.+++..+++++.+++......   ....|+++.|+.++.+++..++..++++|++++.++ .++.
T Consensus       226 ~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~~---~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~  302 (529)
T d1jdha_         226 AGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKM  302 (529)
T ss_dssp             TTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred             hhhhhhHHHHhcccchhhhhhhhhHHHhccccccch---hhhhhcchhhhhhcccccHHHHHHHHHHHHhhccchhHHHH
Confidence            999999999999999999999999999997533221   233578999999999999999999999999999765 4556


Q ss_pred             hHHhhCChHHHHHhh--cCCChhHHHHHHHHHHHcccCCc----hhhHHHhhCCccccccccccccc--chHHHHHHHHH
Q 005282          355 GIAQDGGILPLLKLL--DSKNGSLQHNAAFALYGLADNED----NVADLVRVGGVQKLQDGEFTVQP--TKDCVARTLKR  426 (704)
Q Consensus       355 ~~~~~~~~~~L~~ll--~~~~~~v~~~a~~~L~~l~~~~~----~~~~l~~~g~i~~l~~~~~~~~~--~~~~~~~~~~~  426 (704)
                      .+.+.++++.++.++  .+.+++++..++.+|.+++....    ....+...|+++.+++.......  ........+.+
T Consensus       303 ~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~~~~~~~~l~~  382 (529)
T d1jdha_         303 MVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRN  382 (529)
T ss_dssp             HHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHH
T ss_pred             HHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhhcccchhhcchhhhhhHHhcccchhHHHHHhccchHHHHHHHHHHHhh
Confidence            677889999999887  34677899999999999996543    34556678888888765433221  11222222222


Q ss_pred             H-------HHHhhcchhHHHHHHHhhccH----------------------HHHHHHHHHHHhccCCCccceeeecCCcH
Q 005282          427 L-------EEKVHGRVLNHLLYLLRVADR----------------------AVKRRVTLALAHLCAPDDCKTIFIDNNGL  477 (704)
Q Consensus       427 ~-------~~~~~~~~~~~L~~ll~~~~~----------------------~v~~~a~~~L~~l~~~~~~~~~l~~~~~i  477 (704)
                      +       ......+.++.++.++.+++.                      ++...++.++..++....++..+.+.|++
T Consensus       383 l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~la~~~~~r~~~~~~~~i  462 (529)
T d1jdha_         383 LALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTI  462 (529)
T ss_dssp             HTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCH
T ss_pred             cchhhhhhhhhhhcccHHHHHHHHhcCCHHHHHHHHhhhhhHHhhcccchHHHHHHHHHHHHHHccCHHHHHHHHHCCCH
Confidence            2       122255788999999876553                      45566778888888888888888889999


Q ss_pred             HHHHHHHhhcchhhhhhHHHHHHHHhhhc
Q 005282          478 ELLLGLLESTSVKQREESSVALYKLATKA  506 (704)
Q Consensus       478 ~~L~~ll~~~~~~~~~~a~~~L~~L~~~~  506 (704)
                      +.|++++.++++.++..|+.+|++|+.+.
T Consensus       463 ~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~  491 (529)
T d1jdha_         463 PLFVQLLYSPIENIQRVAAGVLCELAQDK  491 (529)
T ss_dssp             HHHHHGGGCSCHHHHHHHHHHHHHHTTSH
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHhcCh
Confidence            99999999999999999999999998754

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=6.1e-29  Score=262.72  Aligned_cols=367  Identities=18%  Similarity=0.239  Sum_probs=315.2

Q ss_pred             CCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CCh-hhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHH
Q 005282           91 NGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKP-EHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVI  168 (704)
Q Consensus        91 ~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~-~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~  168 (704)
                      .+.|+.+++.+++++.          +.+..|+.++.++. .++ ...+.+++.|++|.|+++|++.++       ++++
T Consensus        12 ~~~i~~lv~~l~s~~~----------~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~-------~~v~   74 (434)
T d1q1sc_          12 NWSVEDIVKGINSNNL----------ESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDC-------SPIQ   74 (434)
T ss_dssp             SCCHHHHHHHHTSSCH----------HHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGG-------HHHH
T ss_pred             hhhHHHHHHHHcCCCH----------HHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCC-------HHHH
Confidence            4679999999999976          99999999999987 332 235788999999999999976543       3899


Q ss_pred             HHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCC
Q 005282          169 RRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSED  248 (704)
Q Consensus       169 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~  248 (704)
                      ..++++|++++..+++.+..+.+.|+++.++.++.++++.+++.++++|++++.+++..+..+.+.|+++.++.++...+
T Consensus        75 ~~a~~~L~~la~~~~~~~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~  154 (434)
T d1q1sc_          75 FESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPD  154 (434)
T ss_dssp             HHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSC
T ss_pred             HHHHHHHHHHhcCChhhhhHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcc
Confidence            99999999999888888888999999999999999999999999999999999878888999999999999999998543


Q ss_pred             -----HHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHH
Q 005282          249 -----ASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRP  323 (704)
Q Consensus       249 -----~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~  323 (704)
                           ......+++++.+++...+.........++++.+..++.+++++++..++++|.+++..++.....+...|+++.
T Consensus       155 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~  234 (434)
T d1q1sc_         155 LSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQ  234 (434)
T ss_dssp             GGGSCHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHH
T ss_pred             cccchHHHHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchh
Confidence                 345677889999998776555555556778999999999999999999999999999766667777888899999


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHhhcCCch-hhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcccC-CchhhHHHhhC
Q 005282          324 LIEMLQSPDSQLKEMSAFALGRLAQDTHN-QAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADN-EDNVADLVRVG  401 (704)
Q Consensus       324 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~l~~~g  401 (704)
                      |+.++.++++.++..++.+|.+++.+.+. ...+.+.|+++.++.++.+.+++++..++++|.+++.. ++....+.+.|
T Consensus       235 Lv~ll~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~  314 (434)
T d1q1sc_         235 LVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHG  314 (434)
T ss_dssp             HHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred             cccccccchhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcccchhhhHHHHHHHhhhccccchhHHHHhhhh
Confidence            99999999999999999999999987654 45678889999999999999999999999999999974 44555666655


Q ss_pred             CcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHHHHHHHHhccC--CCccceeeecCCcHHH
Q 005282          402 GVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCA--PDDCKTIFIDNNGLEL  479 (704)
Q Consensus       402 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~l~~~~~i~~  479 (704)
                      +                                 ++.++.++.++++.++..|+++|++++.  +++....+.+.|+++.
T Consensus       315 ~---------------------------------i~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~  361 (434)
T d1q1sc_         315 L---------------------------------VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEP  361 (434)
T ss_dssp             C---------------------------------HHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHH
T ss_pred             h---------------------------------HHHHHHHHhccChHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHH
Confidence            5                                 4457788899999999999999999954  3344455778899999


Q ss_pred             HHHHHhhcchhhhhhHHHHHHHHhhhcC
Q 005282          480 LLGLLESTSVKQREESSVALYKLATKAT  507 (704)
Q Consensus       480 L~~ll~~~~~~~~~~a~~~L~~L~~~~~  507 (704)
                      |++++.+.+++++..+..+|.++.....
T Consensus       362 L~~ll~~~d~~~~~~~l~~l~~ll~~~~  389 (434)
T d1q1sc_         362 LMNLLSAKDTKIIQVILDAISNIFQAAE  389 (434)
T ss_dssp             HHHHTTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999987553

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=5.8e-28  Score=260.19  Aligned_cols=365  Identities=18%  Similarity=0.265  Sum_probs=315.3

Q ss_pred             CCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc--CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHH
Q 005282           91 NGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA--VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVI  168 (704)
Q Consensus        91 ~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~--~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~  168 (704)
                      ...++.+++.+.+.+.          +.+..|+..+.++.  ......+.+++.|++|.|+.++....+       .+++
T Consensus        75 ~~~l~~~~~~~~s~~~----------~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~-------~~iq  137 (503)
T d1wa5b_          75 QQELPQMTQQLNSDDM----------QEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQP-------EMLQ  137 (503)
T ss_dssp             -CCHHHHHHHHSCSSH----------HHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSC-------HHHH
T ss_pred             HHHHHHHHHHhcCCCH----------HHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCC-------HHHH
Confidence            4568889998888765          88899999999887  344456789999999999999986543       2789


Q ss_pred             HHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCC
Q 005282          169 RRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSED  248 (704)
Q Consensus       169 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~  248 (704)
                      ..|+++|.+++.+++.....+...|+++.++.++.+++.+++..++++|++++..++..+..+.+.|+++.++.++.+.+
T Consensus       138 ~~a~~~L~ni~~~~~~~~~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~  217 (503)
T d1wa5b_         138 LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNK  217 (503)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccCC
Confidence            99999999999888888888999999999999999999999999999999999878899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhh
Q 005282          249 ASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEML  328 (704)
Q Consensus       249 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll  328 (704)
                      +.++..++|+|.+++...+.........++++.++.++.+.+++++..++++|.+++...++....+.+.|+++.++.++
T Consensus       218 ~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll  297 (503)
T d1wa5b_         218 PSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELL  297 (503)
T ss_dssp             HHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGG
T ss_pred             HHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcc
Confidence            99999999999999977555444455678999999999999999999999999999987777778889999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHhhcCCchhh-hHHhhCChHHHHHhhcCCChhHHHHHHHHHHHccc-CCchhhHHHhhCCcccc
Q 005282          329 QSPDSQLKEMSAFALGRLAQDTHNQA-GIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLAD-NEDNVADLVRVGGVQKL  406 (704)
Q Consensus       329 ~~~~~~v~~~a~~~L~~l~~~~~~~~-~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~l  406 (704)
                      .+++..++..++.+|++++.+.+... .+...|+++.+..++.+.++.++..++++|.|++. +++....+.+.|+    
T Consensus       298 ~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~----  373 (503)
T d1wa5b_         298 SHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANL----  373 (503)
T ss_dssp             GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTC----
T ss_pred             cCCchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhhccHHHHHHHHHccc----
Confidence            99999999999999999998776654 45667889999999999999999999999999986 5555666666655    


Q ss_pred             cccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHHHHHHHHhccCCC----ccceeeecCCcHHHHHH
Q 005282          407 QDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPD----DCKTIFIDNNGLELLLG  482 (704)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~----~~~~~l~~~~~i~~L~~  482 (704)
                                                   ++.++.++.+++..++..|+|+|.+++...    +....+.+.|+++.|+.
T Consensus       374 -----------------------------l~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~l~~~~~l~~l~~  424 (503)
T d1wa5b_         374 -----------------------------IPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCD  424 (503)
T ss_dssp             -----------------------------HHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHH
T ss_pred             -----------------------------cchhHHhcccCChhHHHHHHHHHHHHHhcccccHHHHHHHHHCCcHHHHHH
Confidence                                         445778888999999999999999995422    23345668899999999


Q ss_pred             HHhhcchhhhhhHHHHHHHHhhh
Q 005282          483 LLESTSVKQREESSVALYKLATK  505 (704)
Q Consensus       483 ll~~~~~~~~~~a~~~L~~L~~~  505 (704)
                      ++.+.++++...+..+|.++...
T Consensus       425 ~L~~~d~~~~~~~L~~l~~ll~~  447 (503)
T d1wa5b_         425 LLEIADNRIIEVTLDALENILKM  447 (503)
T ss_dssp             HTTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHH
Confidence            99999999998999999888653

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=5.3e-25  Score=232.79  Aligned_cols=363  Identities=18%  Similarity=0.221  Sum_probs=275.3

Q ss_pred             CChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHH
Q 005282           92 GAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRR  170 (704)
Q Consensus        92 g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~  170 (704)
                      +.||.|+++|+++++          +++..|+++|+++| ++++++..+.+.|++|.|+++|++++.        +++..
T Consensus         2 ~~ip~lv~~L~~~~~----------~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~--------~v~~~   63 (457)
T d1xm9a1           2 LTIPKAVQYLSSQDE----------KYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQ--------NVQQA   63 (457)
T ss_dssp             CCHHHHHHHHHSSCT----------HHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCH--------HHHHH
T ss_pred             CCHHHHHHHhCCCCH----------HHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCH--------HHHHH
Confidence            468999999999876          99999999999999 889999999999999999999987665        99999


Q ss_pred             HHHHHHHhhhcChhhhhhhhccCCcHHHHHHhc-CCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhh-----
Q 005282          171 AADAITNLAHENANIKTRVRVEDGIPPLVELLK-FVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLML-----  244 (704)
Q Consensus       171 a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL-----  244 (704)
                      |+++|.+++.++++.+..+.+.|+++.++.++. ..++.++..+++++++++. .+..+......++.+.+..++     
T Consensus        64 a~~aL~~L~~~~~~~~~~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~-~~~~~~~~~~~~~~~l~~~~~~~~~~  142 (457)
T d1xm9a1          64 AAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSS-TDELKEELIADALPVLADRVIIPFSG  142 (457)
T ss_dssp             HHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHT-SSSTHHHHHHHHHHHHHHHTTHHHHT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHh-hhhhHHHHHhcccHHHHHHHHhhhhh
Confidence            999999999888999999999999999999887 5678999999999999996 455555555544433333322     


Q ss_pred             ----------cCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCC------ChhHHHHHHHHHHH-----
Q 005282          245 ----------RSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSS------CSESKREAALLLGQ-----  303 (704)
Q Consensus       245 ----------~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~------~~~~~~~a~~~L~~-----  303 (704)
                                ...+..++..+++++.+++..++.........|+++.++.++.+.      .......+...+.+     
T Consensus       143 ~~~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~  222 (457)
T d1xm9a1         143 WCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRL  222 (457)
T ss_dssp             CC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTH
T ss_pred             hhcchhhhhcccccHHHHHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhh
Confidence                      245788999999999999877444444344567788888887532      11111111111111     


Q ss_pred             ----------Hh-----------------------------------ccCCcchHHHHhcCChHHHHHhhC-CCCHHHHH
Q 005282          304 ----------FA-----------------------------------AADSNSKVHIVQRGAVRPLIEMLQ-SPDSQLKE  337 (704)
Q Consensus       304 ----------l~-----------------------------------~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~v~~  337 (704)
                                +.                                   .........+...++++.++.++. ..++.++.
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~  302 (457)
T d1xm9a1         223 DAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLE  302 (457)
T ss_dssp             HHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHH
T ss_pred             HHHHHHHHHHHHhhhhhhhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHH
Confidence                      00                                   001111222233456677777775 45788899


Q ss_pred             HHHHHHHHhhcCCch------hhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcccCCchhhHHHhhCCccccccccc
Q 005282          338 MSAFALGRLAQDTHN------QAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADLVRVGGVQKLQDGEF  411 (704)
Q Consensus       338 ~a~~~L~~l~~~~~~------~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~g~i~~l~~~~~  411 (704)
                      .+.+++.+++.....      +..+.+.|+++.|++++.++++.++..++.+|.+++.+++++..+.+ ++++.      
T Consensus       303 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~~~~~i~~-~~i~~------  375 (457)
T d1xm9a1         303 ACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGN-QVFPE------  375 (457)
T ss_dssp             HHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHH-HTHHH------
T ss_pred             HHHHHHHHHhhccccchHHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhChhHHHHHHH-hhHHH------
Confidence            999999999876442      33456679999999999999999999999999999999888777665 44443      


Q ss_pred             ccccchHHHHHHHHHHHHHhhcchhHHHHHHHh------hccHHHHHHHHHHHHhcc-CCCccceeeecCCcHHHHHHHH
Q 005282          412 TVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLR------VADRAVKRRVTLALAHLC-APDDCKTIFIDNNGLELLLGLL  484 (704)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~------~~~~~v~~~a~~~L~~l~-~~~~~~~~l~~~~~i~~L~~ll  484 (704)
                                                 ++.++.      ..+++++..++.+|.+++ .++..+..+.+.||++.|+.++
T Consensus       376 ---------------------------li~~L~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~L~~l~  428 (457)
T d1xm9a1         376 ---------------------------VTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLC  428 (457)
T ss_dssp             ---------------------------HHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHH
T ss_pred             ---------------------------HHHHHhccccCcCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHH
Confidence                                       333332      234689999999999995 4667788888999999999999


Q ss_pred             hh-cchhhhhhHHHHHHHHhhhcC
Q 005282          485 ES-TSVKQREESSVALYKLATKAT  507 (704)
Q Consensus       485 ~~-~~~~~~~~a~~~L~~L~~~~~  507 (704)
                      .+ +++.+++.|+.+|.+|..+..
T Consensus       429 ~~~~~~~~~~aA~~~L~~L~~~~~  452 (457)
T d1xm9a1         429 RSSASPKAAEAARLLLSDMWSSKE  452 (457)
T ss_dssp             HCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred             hCCCCHHHHHHHHHHHHHHHcCHh
Confidence            86 567899999999999987653

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=5.9e-23  Score=216.80  Aligned_cols=364  Identities=17%  Similarity=0.224  Sum_probs=268.1

Q ss_pred             HHHHHHHhhhccCCchhhHHHHHHHHHHHHHhhc-ChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHH
Q 005282           47 IRAQIDILNSKFSSDETDRAAAKTASHALVEFAK-NEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFA  125 (704)
Q Consensus        47 ~~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~  125 (704)
                      +|.+++.|..      +++.++..|+++|.+++. +++++..+++.|+||.|+++|++++.          +++..|+++
T Consensus         4 ip~lv~~L~~------~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~----------~v~~~a~~a   67 (457)
T d1xm9a1           4 IPKAVQYLSS------QDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQ----------NVQQAAAGA   67 (457)
T ss_dssp             HHHHHHHHHS------SCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCH----------HHHHHHHHH
T ss_pred             HHHHHHHhCC------CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCH----------HHHHHHHHH
Confidence            4556665533      445678999999999987 68999999999999999999998765          999999999


Q ss_pred             HHhhc-CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHh--
Q 005282          126 LGLLA-VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELL--  202 (704)
Q Consensus       126 L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll--  202 (704)
                      |.+|+ .+++++..+.+.|+++.++.++....+       ++++..++++|.+++.. +..+......+ ++.++..+  
T Consensus        68 L~~L~~~~~~~~~~i~~~g~v~~li~~l~~~~~-------~~~~~~a~~~l~~l~~~-~~~~~~~~~~~-~~~l~~~~~~  138 (457)
T d1xm9a1          68 LRNLVFRSTTNKLETRRQNGIREAVSLLRRTGN-------AEIQKQLTGLLWNLSST-DELKEELIADA-LPVLADRVII  138 (457)
T ss_dssp             HHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCC-------HHHHHHHHHHHHHHHTS-SSTHHHHHHHH-HHHHHHHTTH
T ss_pred             HHHHHcCCHHHHHHHHHCCChHHHHHHHhccCc-------HHHHHHHHHHHHHHHhh-hhhHHHHHhcc-cHHHHHHHHh
Confidence            99999 899999999999999999999987654       38999999999999964 33444444433 33333332  


Q ss_pred             --------------cCCCHHHHHHHHHHHHHhccCCchhhHHh-HhcCChHHHHHhhcCC------CHHHHHHHHHHHHH
Q 005282          203 --------------KFVDVKVQRAAAGALRTLAFKNDENKKLI-VECNALPTLVLMLRSE------DASVHFEAVGVIGN  261 (704)
Q Consensus       203 --------------~~~~~~~~~~a~~~L~~l~~~~~~~~~~~-~~~~~i~~L~~lL~~~------~~~v~~~a~~~L~~  261 (704)
                                    ...++.++..+++++.+++. .++++... ...|+++.++.++++.      .......+...+.+
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~v~~~a~~~l~~~~~-~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~  217 (457)
T d1xm9a1         139 PFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSS-ADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHN  217 (457)
T ss_dssp             HHHTCC---------CCCHHHHHHHHHHHHHHTT-SHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHH
T ss_pred             hhhhhhcchhhhhcccccHHHHHHHHHHHHHHhc-CchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhh
Confidence                          24578999999999999997 55555554 4567789998887632      11111111111111


Q ss_pred             H---------------hc-----------------------------------CChhhHHHHHHcCCHHHHHHHhcC-CC
Q 005282          262 L---------------VH-----------------------------------SSPSIKKEVILAGALQPVIGLLSS-SC  290 (704)
Q Consensus       262 l---------------~~-----------------------------------~~~~~~~~~~~~~~l~~L~~ll~~-~~  290 (704)
                      .               ..                                   ..+.....+...++++.++.++.. .+
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~  297 (457)
T d1xm9a1         218 LSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKK  297 (457)
T ss_dssp             HTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCC
T ss_pred             hhhhhHHHHHHHHHHHHhhhhhhhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccc
Confidence            1               00                                   001111112223456667776654 45


Q ss_pred             hhHHHHHHHHHHHHhccCCcc-----hHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHH
Q 005282          291 SESKREAALLLGQFAAADSNS-----KVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPL  365 (704)
Q Consensus       291 ~~~~~~a~~~L~~l~~~~~~~-----~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L  365 (704)
                      +.++..+.+++.+++......     +..+.+.|+++.|+.++.++++.++..++++|++++.++.++..+. .++++.+
T Consensus       298 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~~~~~i~-~~~i~~l  376 (457)
T d1xm9a1         298 DATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMG-NQVFPEV  376 (457)
T ss_dssp             HHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHH-HHTHHHH
T ss_pred             hHHHHHHHHHHHHHhhccccchHHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhChhHHHHHH-HhhHHHH
Confidence            677888999999998654432     3445567999999999999999999999999999999888876665 5788999


Q ss_pred             HHhhcC------CChhHHHHHHHHHHHccc-CCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHH
Q 005282          366 LKLLDS------KNGSLQHNAAFALYGLAD-NEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNH  438 (704)
Q Consensus       366 ~~ll~~------~~~~v~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (704)
                      +.++..      .+++++..++.+|.+++. ++++++.+++.|+++                                 .
T Consensus       377 i~~L~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~---------------------------------~  423 (457)
T d1xm9a1         377 TRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLN---------------------------------N  423 (457)
T ss_dssp             HHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHH---------------------------------H
T ss_pred             HHHHhccccCcCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHH---------------------------------H
Confidence            998854      235799999999999985 777888888877654                                 4


Q ss_pred             HHHHHhh-ccHHHHHHHHHHHHhccCCCcccee
Q 005282          439 LLYLLRV-ADRAVKRRVTLALAHLCAPDDCKTI  470 (704)
Q Consensus       439 L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~  470 (704)
                      |+.++.+ +++.+++.|+.+|.+|+.+++-|..
T Consensus       424 L~~l~~~~~~~~~~~aA~~~L~~L~~~~~~~~~  456 (457)
T d1xm9a1         424 IINLCRSSASPKAAEAARLLLSDMWSSKELQGV  456 (457)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHTTSSSTTCSSC
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHHHcCHhhHhh
Confidence            6777766 4678999999999999887776643

>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.6e-22  Score=169.16  Aligned_cols=106  Identities=24%  Similarity=0.338  Sum_probs=100.9

Q ss_pred             HHhhhcCCCcccEEEEEcCeEeehhHHHHhhcCHHHHHhhcCCCCCCCCCceEcCCCCHHHHHHHHHHHhcCccccChhh
Q 005282          526 GEQFVNNPTLSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFIYTGNVDVSVDI  605 (704)
Q Consensus       526 ~~~~~~~~~~~d~~~~~~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~  605 (704)
                      .+.++.++.+||+++.++|++|+|||.||+++|+||++||.+++.++....+.+++++++.|..+++|+|+|++.++.++
T Consensus        16 l~~l~~~~~~~Dv~l~v~~~~~~~Hk~vLa~~S~~F~~~f~~~~~e~~~~~~~~~~v~~~~f~~ll~~~Ytg~~~i~~~~   95 (122)
T d1r29a_          16 LNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPEINPEGFNILLDFMYTSRLNLREGN   95 (122)
T ss_dssp             HHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTSTTTTTCSEEECCTTSCHHHHHHHHHHHHHSCCCCCTTT
T ss_pred             HHHHHhcCCCeEEEEEECCEEEEEehHHhhhCCHHHHHHhccchhhhcceeeeecccCHHHHHHHHhhhcCCeecCchhh
Confidence            37788999999999999999999999999999999999999999998877777789999999999999999999999999


Q ss_pred             HHHHHHHHhhhChHhHHHHHHHHHHh
Q 005282          606 AQDLLRAADQYLLEGLKRLCEYSIAQ  631 (704)
Q Consensus       606 ~~~ll~~A~~~~~~~l~~~c~~~l~~  631 (704)
                      +.+++.+|++|++++|++.|++||..
T Consensus        96 v~~ll~~A~~l~i~~L~~~C~~~L~~  121 (122)
T d1r29a_          96 IMAVMATAMYLQMEHVVDTCRKFIKA  121 (122)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHCcHHHHHHHHHHHHh
Confidence            99999999999999999999999864

>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=3.1e-22  Score=166.02  Aligned_cols=109  Identities=25%  Similarity=0.398  Sum_probs=98.2

Q ss_pred             CCchhhchHHhhhcCCCcccEEEEEcCeEeehhHHHHhhcCHHHHHhhcCCCCCCCCCceEcCCCCHHHHHHHHHHHhcC
Q 005282          518 SPTQQVYLGEQFVNNPTLSDVTFVVEGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFIYTG  597 (704)
Q Consensus       518 ~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~  597 (704)
                      ++.....-.+.++.++.+||+++.++|++|+|||.||+++|+||+++|.++     ..++.++++++++|+.+|+|+|||
T Consensus        11 h~~~ll~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~~F~~lf~~~-----~~~i~~~~v~~~~f~~ll~~~Ytg   85 (121)
T d1buoa_          11 HPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRN-----SQHYTLDFLSPKTFQQILEYAYTA   85 (121)
T ss_dssp             HHHHHHHHHHHHHHHTTTCCEEEEESSCEEEECHHHHHHHCHHHHHHTTSC-----CSEEEECSSCHHHHHHHHHHHHHS
T ss_pred             hHHHHHHHHHHHHhcCCcEeEEEEECCEEEEEEHHHhcccChhhhhhccCc-----cceeecCCCCHHHHHHHHHheEcc
Confidence            333333334788999999999999999999999999999999999999764     357999999999999999999999


Q ss_pred             ccccChhhHHHHHHHHhhhChHhHHHHHHHHHHh
Q 005282          598 NVDVSVDIAQDLLRAADQYLLEGLKRLCEYSIAQ  631 (704)
Q Consensus       598 ~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~  631 (704)
                      ++.++.+++.+++.+|++|++++|++.|+++|..
T Consensus        86 ~i~l~~~~v~~ll~~A~~l~~~~L~~~C~~~L~~  119 (121)
T d1buoa_          86 TLQAKAEDLDDLLYAAEILEIEYLEEQCLKMLET  119 (121)
T ss_dssp             CCCCCGGGHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             ccCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999964

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=2.3e-18  Score=166.87  Aligned_cols=197  Identities=21%  Similarity=0.211  Sum_probs=177.7

Q ss_pred             hhhHHHHHHHHHHHHHhhcChhHHHHHHhCCChHHHHh-hccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhHHHH
Q 005282           62 ETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVE-HLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQQII  139 (704)
Q Consensus        62 ~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~-lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~~~~  139 (704)
                      ..+...+..|+..|.+++.+.+++..+...|+++.++. ++.+++          ++++..|+++|++++ +++.++..+
T Consensus        28 ~~~~~~~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~s~~----------~~vr~~A~~~L~~l~~~~~~~~~~~   97 (264)
T d1xqra1          28 AADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGA----------AGLRWRAAQLIGTCSQNVAAIQEQV   97 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSS----------HHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCCHHHHHHHHhCCCC----------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455678899999999999899999999999999986 666654          499999999999999 789999999


Q ss_pred             HHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHH
Q 005282          140 VDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRT  219 (704)
Q Consensus       140 ~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~  219 (704)
                      .+.|++|.|+.++.+..+       +.++..++++|++++.+++..+..+...|+++.|++++.++++.++..++++|++
T Consensus        98 ~~~~~i~~Lv~lL~~~~~-------~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~  170 (264)
T d1xqra1          98 LGLGALRKLLRLLDRDAC-------DTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQN  170 (264)
T ss_dssp             HHTTHHHHHHHHHHHCSC-------HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred             HHcCchHHHHHHhhcCCC-------HHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHH
Confidence            999999999999986543       3899999999999999899999999999999999999999999999999999999


Q ss_pred             hccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHH
Q 005282          220 LAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVIL  275 (704)
Q Consensus       220 l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~  275 (704)
                      ++.+++..+..+.+.|+++.|+.+++++++.++..++++|++++..++........
T Consensus       171 l~~~~~~~~~~~~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~  226 (264)
T d1xqra1         171 LLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECRE  226 (264)
T ss_dssp             HHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHC
T ss_pred             HHhccHHHHHHHHHhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            99888999999999999999999999999999999999999999888776665553

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.2e-18  Score=168.93  Aligned_cols=195  Identities=15%  Similarity=0.140  Sum_probs=176.6

Q ss_pred             chHHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHH-HHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccC
Q 005282          115 EHEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVS-LLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVED  193 (704)
Q Consensus       115 d~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~-lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~  193 (704)
                      |.+.+..|+.+|.+++.+.+++..+...|+++.++. ++.+.+.        +++..|+++|++++.+++..+..+...|
T Consensus        30 ~~~~~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~s~~~--------~vr~~A~~~L~~l~~~~~~~~~~~~~~~  101 (264)
T d1xqra1          30 DQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAA--------GLRWRAAQLIGTCSQNVAAIQEQVLGLG  101 (264)
T ss_dssp             HHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSH--------HHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHHcCHHHHHHHHHcCCHHHHHHHHhCCCCH--------HHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            358899999999999998999999999999999986 4554433        9999999999999998999999999999


Q ss_pred             CcHHHHHHhc-CCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHH
Q 005282          194 GIPPLVELLK-FVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKE  272 (704)
Q Consensus       194 ~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~  272 (704)
                      ++|.|+.++. ..++.++..++++|.+++.+++..+..+...|+++.|++++.++++.++..++++|++++..++.....
T Consensus       102 ~i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~  181 (264)
T d1xqra1         102 ALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGT  181 (264)
T ss_dssp             HHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred             chHHHHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHH
Confidence            9999999997 567899999999999999988999999999999999999999999999999999999999888899999


Q ss_pred             HHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHh
Q 005282          273 VILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQ  317 (704)
Q Consensus       273 ~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~  317 (704)
                      +.+.|+++.|+.++.+++++++..++++|.+++..++........
T Consensus       182 ~~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~  226 (264)
T d1xqra1         182 LCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECRE  226 (264)
T ss_dssp             HHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHC
T ss_pred             HHHhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            999999999999999999999999999999999766555544443

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=8.2e-14  Score=151.62  Aligned_cols=409  Identities=15%  Similarity=0.115  Sum_probs=273.7

Q ss_pred             HHHHhhhccCCchhhHHHHHHHHHHHHHhhcC--hhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHH
Q 005282           50 QIDILNSKFSSDETDRAAAKTASHALVEFAKN--EEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALG  127 (704)
Q Consensus        50 l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~--~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~  127 (704)
                      +.+.+..++.  +.++.++..++..+..++..  .+.    ....+++.+..++.+++.          .+|..|+.++.
T Consensus       165 l~~~~~~l~~--D~~~~VR~~a~~~l~~~~~~~~~~~----~~~~l~~~l~~l~~d~~~----------~vr~~a~~~l~  228 (588)
T d1b3ua_         165 LRQYFRNLCS--DDTPMVRRAAASKLGEFAKVLELDN----VKSEIIPMFSNLASDEQD----------SVRLLAVEACV  228 (588)
T ss_dssp             HHHHHHHHHT--CSCHHHHHHHHHHHHHHHHTSCHHH----HHHTHHHHHHHHHTCSCH----------HHHTTHHHHHH
T ss_pred             HHHHHHHHhc--cCCHHHHHHHHHHHHHHHHHhcHHH----HHHHHHHHHHHHhcCCch----------hhHHHHHHHHH
Confidence            3444444443  23455778888888877663  222    233457778888877754          89999999999


Q ss_pred             hhc--CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCC
Q 005282          128 LLA--VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFV  205 (704)
Q Consensus       128 ~l~--~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~  205 (704)
                      .++  ..++...    ...++.+..++.+.+        +.++..++.+|++++..-.   ........++.+..++.++
T Consensus       229 ~i~~~~~~~~~~----~~i~~~l~~~~~D~~--------~~Vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~ll~d~  293 (588)
T d1b3ua_         229 NIAQLLPQEDLE----ALVMPTLRQAAEDKS--------WRVRYMVADKFTELQKAVG---PEITKTDLVPAFQNLMKDC  293 (588)
T ss_dssp             HHHHHSCHHHHH----HHTHHHHHHHHTCSS--------HHHHHHHHHTHHHHHHHHC---HHHHHHTHHHHHHHHHTCS
T ss_pred             HhhccCCHHHHH----HHHHHHHHHhccccc--------HHHHHHHHHhHHHHHHHhh---hhhhhhhhhHHHHHHHhcc
Confidence            988  2332222    235677777776544        4899999999999874221   1233456789999999999


Q ss_pred             CHHHHHHHHHHHHHhccCCc-hhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHH
Q 005282          206 DVKVQRAAAGALRTLAFKND-ENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIG  284 (704)
Q Consensus       206 ~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~  284 (704)
                      +++++..++.++..++..-. ..........+++.+...+.+.++.++..++.++..++..   ..........++.+..
T Consensus       294 ~~~vr~~a~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~---~~~~~~~~~l~p~l~~  370 (588)
T d1b3ua_         294 EAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPI---LGKDNTIEHLLPLFLA  370 (588)
T ss_dssp             SHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHH---HCHHHHHHHTHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhcCCChHHHHHHHHHHhhhhhc---cchhHHHHHHHHHHHH
Confidence            99999999999999875322 2233333455788899999999999999999888877632   1112223457889999


Q ss_pred             HhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHH
Q 005282          285 LLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILP  364 (704)
Q Consensus       285 ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~  364 (704)
                      .+.+++++++..++..+..+......  . -....+++.+..++.+.++.+|..++.++..++..-..  ........+.
T Consensus       371 ~l~d~~~~v~~~~~~~l~~~~~~~~~--~-~~~~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~--~~~~~~l~~~  445 (588)
T d1b3ua_         371 QLKDECPEVRLNIISNLDCVNEVIGI--R-QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGV--EFFDEKLNSL  445 (588)
T ss_dssp             HHTCSCHHHHHHHHTTCHHHHHHSCH--H-HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCG--GGCCHHHHHH
T ss_pred             HHHhhhhhhhhHHHHHHHHHHhhcch--h-hhhhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCh--HhHHHHHHHH
Confidence            99999999999888887776532211  1 12234678888999999999999999999998743111  1122233456


Q ss_pred             HHHhhcCCChhHHHHHHHHHHHccc--CCchhhHHHhhCCcccccccccccccc-----hHHHHHHHHHHH-HHhhcchh
Q 005282          365 LLKLLDSKNGSLQHNAAFALYGLAD--NEDNVADLVRVGGVQKLQDGEFTVQPT-----KDCVARTLKRLE-EKVHGRVL  436 (704)
Q Consensus       365 L~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~l~~~g~i~~l~~~~~~~~~~-----~~~~~~~~~~~~-~~~~~~~~  436 (704)
                      +..++.+....+|..|+.+|..++.  .++.    .....++.+.+........     ..++........ ..+...++
T Consensus       446 l~~~l~D~~~~VR~~A~~~L~~l~~~~~~~~----~~~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~il  521 (588)
T d1b3ua_         446 CMAWLVDHVYAIREAATSNLKKLVEKFGKEW----AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHML  521 (588)
T ss_dssp             HHHGGGCSSHHHHHHHHHHHHHHHHHHCHHH----HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred             HHhhccCCchhHHHHHHHHHHHHHHHhCcHH----HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcChHHHHHHHH
Confidence            7788889999999999999999974  2211    1122333333221111111     112222222111 12245688


Q ss_pred             HHHHHHHhhccHHHHHHHHHHHHhccCCCccceeeecCCcHHHHHHHHhhcchhhhhhHHHHHHHHh
Q 005282          437 NHLLYLLRVADRAVKRRVTLALAHLCAPDDCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLA  503 (704)
Q Consensus       437 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~  503 (704)
                      +.++.++.+..+.||..++.+|..+...-+...  ......+.|.+++++++.+||..|..+|..|+
T Consensus       522 p~ll~~~~D~v~nVR~~a~~~l~~i~~~~~~~~--~~~~i~~~l~~L~~D~d~dVr~~A~~al~~l~  586 (588)
T d1b3ua_         522 PTVLRMAGDPVANVRFNVAKSLQKIGPILDNST--LQSEVKPILEKLTQDQDVDVKYFAQEALTVLS  586 (588)
T ss_dssp             HHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHH--HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcHh--HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence            999999999999999999999999965333221  22345677777888899999999999998775

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=4.3e-13  Score=145.80  Aligned_cols=411  Identities=15%  Similarity=0.114  Sum_probs=270.3

Q ss_pred             HHHHHHhhhccCCchhhHHHHHHHHHHHHHhhc---ChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHH
Q 005282           48 RAQIDILNSKFSSDETDRAAAKTASHALVEFAK---NEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAF  124 (704)
Q Consensus        48 ~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~---~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~  124 (704)
                      +.+++.|...+.++++   ++..++..|.++..   +++...     ..++.+..++..++.          .||..|+.
T Consensus        48 ~~lip~l~~~~~~~~e---v~~~~~~~l~~~~~~~~~~~~~~-----~ll~~l~~l~~~~~~----------~Vr~~a~~  109 (588)
T d1b3ua_          48 SELLPFLTDTIYDEDE---VLLALAEQLGTFTTLVGGPEYVH-----CLLPPLESLATVEET----------VVRDKAVE  109 (588)
T ss_dssp             HTHHHHHHHTCCCCHH---HHHHHHHHHTTCSGGGTSGGGGG-----GGHHHHHHHTTSSCH----------HHHHHHHH
T ss_pred             HHHHHHHHHHhcCcHH---HHHHHHHHHHHHHHHcCChhHHH-----HHHHHHHHHccCCCH----------HHHHHHHH
Confidence            5567777777655443   45566666766643   344433     346777777777654          89999999


Q ss_pred             HHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcC-hhhhhhhhccCCcHHHHHHhc
Q 005282          125 ALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHEN-ANIKTRVRVEDGIPPLVELLK  203 (704)
Q Consensus       125 ~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~ll~  203 (704)
                      ++..++......  -.....+|.+..+..+...        ..+..++..+..+.... +..+     ...++.+.++++
T Consensus       110 ~l~~i~~~~~~~--~~~~~l~p~i~~L~~~~~~--------~~r~~a~~ll~~~~~~~~~~~~-----~~l~~~~~~l~~  174 (588)
T d1b3ua_         110 SLRAISHEHSPS--DLEAHFVPLVKRLAGGDWF--------TSRTSACGLFSVCYPRVSSAVK-----AELRQYFRNLCS  174 (588)
T ss_dssp             HHHHHHTTSCHH--HHHHTHHHHHHHHHTCSSH--------HHHHHHGGGHHHHTTTSCHHHH-----HHHHHHHHHHHT
T ss_pred             HHHHHHHhCCHH--HHHHHHHHHHHHHhcccch--------HHHHHHHHHHHHHHHHhhHHHH-----HHHHHHHHHHhc
Confidence            999999322211  1222334545555554322        56777777777776422 2222     234678888999


Q ss_pred             CCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHH
Q 005282          204 FVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVI  283 (704)
Q Consensus       204 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~  283 (704)
                      +.++.+|..++.++..++.....   .......++.+..+++++++.+|..++.++..++...+.   .......++.+.
T Consensus       175 D~~~~VR~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~---~~~~~~i~~~l~  248 (588)
T d1b3ua_         175 DDTPMVRRAAASKLGEFAKVLEL---DNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ---EDLEALVMPTLR  248 (588)
T ss_dssp             CSCHHHHHHHHHHHHHHHHTSCH---HHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCH---HHHHHHTHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHHhcH---HHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhccCCH---HHHHHHHHHHHH
Confidence            99999999999999999863221   122345678888999999999999999999998754322   122334688888


Q ss_pred             HHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC--chhhhHHhhCC
Q 005282          284 GLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDT--HNQAGIAQDGG  361 (704)
Q Consensus       284 ~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~~~  361 (704)
                      .++.+.++.++..++.+|++++.....   ......+++.+..++.+++++++..++.++..++..-  ...........
T Consensus       249 ~~~~D~~~~Vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~~~~~~~i  325 (588)
T d1b3ua_         249 QAAEDKSWRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQI  325 (588)
T ss_dssp             HHHTCSSHHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTH
T ss_pred             HhcccccHHHHHHHHHhHHHHHHHhhh---hhhhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhhhHHHH
Confidence            999999999999999999998743221   2333567899999999999999999999999988643  23333344556


Q ss_pred             hHHHHHhhcCCChhHHHHHHHHHHHccc--CCchhhHHHhhCCccccccccccccc-chHHHHHHHHHHHH-----Hhhc
Q 005282          362 ILPLLKLLDSKNGSLQHNAAFALYGLAD--NEDNVADLVRVGGVQKLQDGEFTVQP-TKDCVARTLKRLEE-----KVHG  433 (704)
Q Consensus       362 ~~~L~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~l~~~g~i~~l~~~~~~~~~-~~~~~~~~~~~~~~-----~~~~  433 (704)
                      ++.+...+.+.++.++..++.++..++.  ..+..    ....++.+......... ....+...+.....     ....
T Consensus       326 ~~~l~~~~~d~~~~vr~~~~~~l~~~~~~~~~~~~----~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~~~~~~~  401 (588)
T d1b3ua_         326 LPCIKELVSDANQHVKSALASVIMGLSPILGKDNT----IEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQ  401 (588)
T ss_dssp             HHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHH----HHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHH
T ss_pred             HHHHHHhhcCCChHHHHHHHHHHhhhhhccchhHH----HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcchhhhhh
Confidence            7778888899999999999888877753  11111    01112221111100010 11111111221111     1234


Q ss_pred             chhHHHHHHHhhccHHHHHHHHHHHHhccCCCccceeeecCCcHHHHHHHHhhcchhhhhhHHHHHHHHhhhc
Q 005282          434 RVLNHLLYLLRVADRAVKRRVTLALAHLCAPDDCKTIFIDNNGLELLLGLLESTSVKQREESSVALYKLATKA  506 (704)
Q Consensus       434 ~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~L~~~~  506 (704)
                      .+++.+..++.+.++.++..++.++..++..-....  ......+.+..++.++...+|..|+.+|..|+...
T Consensus       402 ~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~D~~~~VR~~A~~~L~~l~~~~  472 (588)
T d1b3ua_         402 SLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEF--FDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKF  472 (588)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGG--CCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcChHh--HHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHh
Confidence            567788888899999999999999998854211111  22345667778888888999999999999998754

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=3.3e-09  Score=110.15  Aligned_cols=390  Identities=13%  Similarity=0.071  Sum_probs=231.6

Q ss_pred             HHHHhhhccCCchhhHHHHHHHHHHHHHhhcC--hhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHH
Q 005282           50 QIDILNSKFSSDETDRAAAKTASHALVEFAKN--EEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALG  127 (704)
Q Consensus        50 l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~--~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~  127 (704)
                      ++++|..+++.+.   ..+.+|-..|..+..+  |+         .+..|..++.+.+.        +..+|..|+..|.
T Consensus         2 l~~il~~~~s~d~---~~r~~A~~~L~~~~~~~~~~---------~~~~l~~il~~~~~--------~~~~R~~A~i~lk   61 (458)
T d1ibrb_           2 LITILEKTVSPDR---LELEAAQKFLERAAVENLPT---------FLVELSRVLANPGN--------SQVARVAAGLQIK   61 (458)
T ss_dssp             HHHHHHHTTCSCH---HHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHCTTS--------CHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCcCH---HHHHHHHHHHHHHHhcCchH---------HHHHHHHHHhcCCC--------CHHHHHHHHHHHH
Confidence            4566767766444   4567777777777653  23         26777888877654        4589999998888


Q ss_pred             hhc-C-ChhhHHHHH----------HcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCc
Q 005282          128 LLA-V-KPEHQQIIV----------DTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGI  195 (704)
Q Consensus       128 ~l~-~-~~~~~~~~~----------~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i  195 (704)
                      |.. . .+.......          .....+.+++.+.+...         .+..++.+++.++......   -.-.+.+
T Consensus        62 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~~~~~~~---------~~~~~~~~~~~i~~~~~~~---~~~~~~~  129 (458)
T d1ibrb_          62 NSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETY---------RPSSASQCVAGIACAEIPV---NQWPELI  129 (458)
T ss_dssp             HHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCS---------SSCSHHHHHHHHHHHHGGG---TCCTTHH
T ss_pred             HHhhccCchhhhHHhhhhccCCHHHHHHHHHHHHhccCCCcH---------HHHHHHHHHHHHHHHhCCc---ccCcchh
Confidence            877 3 222222111          11233345555544332         2233445555554311110   1124567


Q ss_pred             HHHHHHhcC--CCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcC--CCHHHHHHHHHHHHHHhcCChhhHH
Q 005282          196 PPLVELLKF--VDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRS--EDASVHFEAVGVIGNLVHSSPSIKK  271 (704)
Q Consensus       196 ~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~  271 (704)
                      +.++..+.+  .++..+..++.++..++..............+++.++..+.+  .+..++..++.++.++.........
T Consensus       130 ~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~  209 (458)
T d1ibrb_         130 PQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFD  209 (458)
T ss_dssp             HHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHT
T ss_pred             HHHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhh
Confidence            888888864  456788888999888875333222222223356777777764  4578999999999999865432211


Q ss_pred             -HHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC
Q 005282          272 -EVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDT  350 (704)
Q Consensus       272 -~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  350 (704)
                       ........+.+...+.+++++++..++.++..++...+......+.......+.....+.+..++..++..+..++...
T Consensus       210 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~  289 (458)
T d1ibrb_         210 KESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEE  289 (458)
T ss_dssp             SHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence             1222335667777888889999999999999988655433222222223344556667888899999999888886432


Q ss_pred             chhh---------------------hHHhhCChHHHHHhhc-------CCChhHHHHHHHHHHHcccCCchhhHHHhhCC
Q 005282          351 HNQA---------------------GIAQDGGILPLLKLLD-------SKNGSLQHNAAFALYGLADNEDNVADLVRVGG  402 (704)
Q Consensus       351 ~~~~---------------------~~~~~~~~~~L~~ll~-------~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~g~  402 (704)
                      ....                     ........+.+...+.       +.+..++..+..++..++....          
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~----------  359 (458)
T d1ibrb_         290 MDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE----------  359 (458)
T ss_dssp             HHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT----------
T ss_pred             HHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhcc----------
Confidence            1100                     0000111122222221       1122355555555555432100          


Q ss_pred             cccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHHHHHHHHhccCCCccce-eeecCCcHHHHH
Q 005282          403 VQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPDDCKT-IFIDNNGLELLL  481 (704)
Q Consensus       403 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~-~l~~~~~i~~L~  481 (704)
                                                ..+...+++.+...+.++++.++..|+.+|+.++....... .-.-...++.|+
T Consensus       360 --------------------------~~~~~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~i~~~l~  413 (458)
T d1ibrb_         360 --------------------------DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLI  413 (458)
T ss_dssp             --------------------------TTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHH
T ss_pred             --------------------------HhhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHH
Confidence                                      00011244556677788999999999999999975332111 111246789999


Q ss_pred             HHHhhcchhhhhhHHHHHHHHhhhcC
Q 005282          482 GLLESTSVKQREESSVALYKLATKAT  507 (704)
Q Consensus       482 ~ll~~~~~~~~~~a~~~L~~L~~~~~  507 (704)
                      .+++++++.+|..|+++|..++...+
T Consensus       414 ~~l~d~~~~VR~~a~~~l~~i~~~~~  439 (458)
T d1ibrb_         414 ELMKDPSVVVRDTAAWTVGRICELLP  439 (458)
T ss_dssp             HGGGCSCHHHHHHHHHHHHHHHHHGG
T ss_pred             HHhCCCCHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999987653

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=2.1e-09  Score=122.20  Aligned_cols=378  Identities=17%  Similarity=0.134  Sum_probs=219.1

Q ss_pred             HHHHHHHHHHhhcC--hhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcC-ChhhHHHHHHcCC
Q 005282           68 AKTASHALVEFAKN--EEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAV-KPEHQQIIVDTGA  144 (704)
Q Consensus        68 ~~~a~~~L~~l~~~--~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~-~~~~~~~~~~~g~  144 (704)
                      +..+..+|..++..  .+....+     ++.+.+.+.+++.          ..|+.|+.+++.++. ..+...... ...
T Consensus       374 r~~a~~~L~~l~~~~~~~il~~~-----l~~l~~~l~s~~~----------~~reaa~~alg~i~eg~~~~~~~~l-~~l  437 (888)
T d1qbkb_         374 RKCSAAALDVLANVYRDELLPHI-----LPLLKELLFHHEW----------VVKESGILVLGAIAEGCMQGMIPYL-PEL  437 (888)
T ss_dssp             HHHHHHHSTTTTTTCCSSSHHHH-----HHHHHHTTTSSSH----------HHHHHHHHHHHHHTTTSHHHHTTTH-HHH
T ss_pred             HHHHHHHHhhHhhhhHHHHHHHH-----HHHHHHhhccchh----------HHHHHHHHHhhhhhhhHHHHhcccc-hhh
Confidence            44455555555542  2222222     4555666666544          899999999999993 333211111 124


Q ss_pred             cHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCC
Q 005282          145 LPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKN  224 (704)
Q Consensus       145 l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~  224 (704)
                      ++.++..+++.+.        .++..++|+|+.++.........-.....++.++..+.++++.++..|+++|.+++...
T Consensus       438 i~~l~~~l~d~~~--------~Vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~  509 (888)
T d1qbkb_         438 IPHLIQCLSDKKA--------LVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEA  509 (888)
T ss_dssp             HHHHHHHTTSSCH--------HHHHHHHHHHHHTHHHHHSSCHHHHTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHhccCCCH--------HHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence            5666677765543        89999999999988532221111233567888889999999999999999999998522


Q ss_pred             chhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCh-hh-HHHHHHcCCHHHHHHHhcC--CChhHHHHHHHH
Q 005282          225 DENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSP-SI-KKEVILAGALQPVIGLLSS--SCSESKREAALL  300 (704)
Q Consensus       225 ~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~-~~~~~~~~~l~~L~~ll~~--~~~~~~~~a~~~  300 (704)
                      ...... .-..+++.++..+...+...+..+..++..++.... .. ...+. ..+++.+......  .+.........+
T Consensus       510 ~~~l~p-~~~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~-~~l~~~l~~~~~~~~~~~~~~~~~le~  587 (888)
T d1qbkb_         510 CTELVP-YLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYI-QMLMPPLIQKWNMLKDEDKDLFPLLEC  587 (888)
T ss_dssp             TTSSGG-GHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHGGGGCSHHHH-HHHHHHHHHHHTTSCTTCTTHHHHHHH
T ss_pred             hhhhhh-HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhccccchHHH-HHHHHHHHHHHHhcccchHHHHHHHHH
Confidence            111111 112356777777877777777777777777663211 10 11111 1233444443321  122233344555


Q ss_pred             HHHHhccCCcchHHHHh---cCChHHHH--------Hhh-----CCCCHHHHHHHHHHHHHhhcC--CchhhhHHhhCCh
Q 005282          301 LGQFAAADSNSKVHIVQ---RGAVRPLI--------EML-----QSPDSQLKEMSAFALGRLAQD--THNQAGIAQDGGI  362 (704)
Q Consensus       301 L~~l~~~~~~~~~~~~~---~~~i~~L~--------~ll-----~~~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~~~  362 (704)
                      +..++............   ..++..+.        ...     ...+......+..++..++..  ......+.....+
T Consensus       588 l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~  667 (888)
T d1qbkb_         588 LSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNIL  667 (888)
T ss_dssp             HHHHHHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHH
T ss_pred             HHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHH
Confidence            55554322222111110   00111111        111     123456667777777777743  2222223334456


Q ss_pred             HHHHHhhcCCChhHHHHHHHHHHHccc-CCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHH
Q 005282          363 LPLLKLLDSKNGSLQHNAAFALYGLAD-NEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLY  441 (704)
Q Consensus       363 ~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  441 (704)
                      +.+..++.+.+++++..|..+++.++. .+......+                                  ..+++.++.
T Consensus       668 ~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l----------------------------------~~~~~~l~~  713 (888)
T d1qbkb_         668 TLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCI----------------------------------ADFMPILGT  713 (888)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGH----------------------------------HHHHHHHHH
T ss_pred             HHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHH----------------------------------HHHHHHHHH
Confidence            667888999999999999999988864 222111110                                  124556667


Q ss_pred             HHhhccHHHHHHHHHHHHhccCC--CccceeeecCCcHHHHHHHHhhc--chhhhhhHHHHHHHHhhhcC
Q 005282          442 LLRVADRAVKRRVTLALAHLCAP--DDCKTIFIDNNGLELLLGLLEST--SVKQREESSVALYKLATKAT  507 (704)
Q Consensus       442 ll~~~~~~v~~~a~~~L~~l~~~--~~~~~~l~~~~~i~~L~~ll~~~--~~~~~~~a~~~L~~L~~~~~  507 (704)
                      .+..+...++.+|+|+++.++..  +..+..+  ...++.|++.++++  +..++..++.+|+.|+...+
T Consensus       714 ~L~~~~~~v~~~a~~~ig~ia~~~~~~~~py~--~~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~~p  781 (888)
T d1qbkb_         714 NLNPEFISVCNNATWAIGEISIQMGIEMQPYI--PMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCP  781 (888)
T ss_dssp             TCCGGGHHHHHHHHHHHHHHHHHTGGGGGGGS--HHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCH
T ss_pred             HhCcCCHHHHHHHHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHCH
Confidence            77778889999999999999543  2222221  35788899999763  34578889999999988653

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=3.9e-09  Score=119.92  Aligned_cols=400  Identities=13%  Similarity=0.088  Sum_probs=232.6

Q ss_pred             HHHHHHHhhhccCCchhhHHHHHHHHHHHHHhhcCh-hHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHH
Q 005282           47 IRAQIDILNSKFSSDETDRAAAKTASHALVEFAKNE-EIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFA  125 (704)
Q Consensus        47 ~~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~-~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~  125 (704)
                      ++.+++.+...+.++  +...+..|+.+|..++.+. +..... -..+++.++..+.++++          .+|..|+|+
T Consensus       393 l~~~l~~l~~~l~s~--~~~~reaa~~alg~i~eg~~~~~~~~-l~~li~~l~~~l~d~~~----------~Vr~~a~~~  459 (888)
T d1qbkb_         393 LPHILPLLKELLFHH--EWVVKESGILVLGAIAEGCMQGMIPY-LPELIPHLIQCLSDKKA----------LVRSITCWT  459 (888)
T ss_dssp             HHHHHHHHHHTTTSS--SHHHHHHHHHHHHHHTTTSHHHHTTT-HHHHHHHHHHHTTSSCH----------HHHHHHHHH
T ss_pred             HHHHHHHHHHhhccc--hhHHHHHHHHHhhhhhhhHHHHhccc-chhhhHHHHHhccCCCH----------HHHHHHHHH
Confidence            445666666655433  3456777888888887642 111111 02357888888987755          999999999


Q ss_pred             HHhhcC-C-hhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhc
Q 005282          126 LGLLAV-K-PEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLK  203 (704)
Q Consensus       126 L~~l~~-~-~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~  203 (704)
                      |+.++. . +..... .-...++.++..+.+.+.        .++..|+++|.+++......-. -.-...++.++..+.
T Consensus       460 l~~~~~~~~~~~~~~-~~~~~l~~ll~~l~d~~~--------~V~~~a~~al~~l~~~~~~~l~-p~~~~il~~l~~~l~  529 (888)
T d1qbkb_         460 LSRYAHWVVSQPPDT-YLKPLMTELLKRILDSNK--------RVQEAACSAFATLEEEACTELV-PYLAYILDTLVFAFS  529 (888)
T ss_dssp             HHHTHHHHHSSCHHH-HTTTHHHHHHHHHSSSCH--------HHHHHHHHHHHHHHHHHTTSSG-GGHHHHHHHHHHHTT
T ss_pred             HHHHHHHhhhhhhhh-hhhhhHHHHHHHhcCCCH--------HHHHHHHHHHHHHHHHhhhhhh-hHHHHHHHHHHHHHh
Confidence            999982 1 222222 223466777777766554        8999999999999843221111 112345667777777


Q ss_pred             CCCHHHHHHHHHHHHHhccC--CchhhHHhHhcCChHHHHHhhcC--CCHHHHHHHHHHHHHHhcCChh-hH---HHHHH
Q 005282          204 FVDVKVQRAAAGALRTLAFK--NDENKKLIVECNALPTLVLMLRS--EDASVHFEAVGVIGNLVHSSPS-IK---KEVIL  275 (704)
Q Consensus       204 ~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~~~~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~-~~---~~~~~  275 (704)
                      ..+...+..+..++..++..  .........+ ..++.+......  .+.......+.++..++..... ..   ..+..
T Consensus       530 ~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~-~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~  608 (888)
T d1qbkb_         530 KYQHKNLLILYDAIGTLADSVGHHLNKPEYIQ-MLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQ  608 (888)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHHGGGGCSHHHHH-HHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHhhhccccchHHHH-HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHHHHHH
Confidence            77777777777777776531  1111111111 134444444431  2222333445555555432111 11   11110


Q ss_pred             cCCHHHHHHH--------h-----cCCChhHHHHHHHHHHHHhccCCcc-hHHHHhcCChHHHHHhhCCCCHHHHHHHHH
Q 005282          276 AGALQPVIGL--------L-----SSSCSESKREAALLLGQFAAADSNS-KVHIVQRGAVRPLIEMLQSPDSQLKEMSAF  341 (704)
Q Consensus       276 ~~~l~~L~~l--------l-----~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~  341 (704)
                       ..+..+...        .     ...+.+....+..++..++..-... ...+....+++.+...+++.++.++..|..
T Consensus       609 -~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~  687 (888)
T d1qbkb_         609 -RCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFA  687 (888)
T ss_dssp             -HHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChHHHHHHHH
Confidence             011111111        1     1224455556666666665433333 333344567888889999999999999999


Q ss_pred             HHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcccC-CchhhHHHhhCCcccccccccccccchHHH
Q 005282          342 ALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADN-EDNVADLVRVGGVQKLQDGEFTVQPTKDCV  420 (704)
Q Consensus       342 ~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~  420 (704)
                      +++.++........-.-...++.+.+.+.+...+++.+++++++.++.. .+.         +.+.+             
T Consensus       688 llgdl~~~~~~~~~~~l~~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~~~~~---------~~py~-------------  745 (888)
T d1qbkb_         688 LLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIE---------MQPYI-------------  745 (888)
T ss_dssp             HHHHHHHHCGGGTGGGHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHTGGG---------GGGGS-------------
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHH---------hhhhH-------------
Confidence            9999986543332222233556677778888889999999999988641 111         11111             


Q ss_pred             HHHHHHHHHHhhcchhHHHHHHHhhc--cHHHHHHHHHHHHhccC-CCccceeeecCCcHHHHHHHHhh-cchhhhhhHH
Q 005282          421 ARTLKRLEEKVHGRVLNHLLYLLRVA--DRAVKRRVTLALAHLCA-PDDCKTIFIDNNGLELLLGLLES-TSVKQREESS  496 (704)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~L~~ll~~~--~~~v~~~a~~~L~~l~~-~~~~~~~l~~~~~i~~L~~ll~~-~~~~~~~~a~  496 (704)
                                  ..+++.|+.++..+  +..++++++.+|+.++. .++.-...+ ...++.++..+.. .+.+-+..|.
T Consensus       746 ------------~~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~~p~~~~~~l-~~~~~~~~~~l~~~~d~~ek~~~~  812 (888)
T d1qbkb_         746 ------------PMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPML-QQFIRPWCTSLRNIRDNEEKDSAF  812 (888)
T ss_dssp             ------------HHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCHHHHGGGG-GGTHHHHHHHHTTSCCSHHHHHHH
T ss_pred             ------------HHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHCHHHHHhhH-HHHHHHHHHHhccCCCcHHHHHHH
Confidence                        12566788888654  36689999999999954 222111111 2456777777765 5555677888


Q ss_pred             HHHHHHhhhc
Q 005282          497 VALYKLATKA  506 (704)
Q Consensus       497 ~~L~~L~~~~  506 (704)
                      ..++.+.+..
T Consensus       813 ~g~~~~i~~~  822 (888)
T d1qbkb_         813 RGICTMISVN  822 (888)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHHC
Confidence            8999888754

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.02  E-value=1.9e-08  Score=96.48  Aligned_cols=255  Identities=16%  Similarity=0.136  Sum_probs=182.2

Q ss_pred             cCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 005282          142 TGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLA  221 (704)
Q Consensus       142 ~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~  221 (704)
                      ......|+++|.++++        .++..|+.+|..+..  +         ..++.|+.+++++++.++..|+.+|..+.
T Consensus        18 ~~~~~~L~~~L~d~~~--------~vR~~A~~~L~~~~~--~---------~~~~~l~~~l~d~~~~vr~~a~~aL~~l~   78 (276)
T d1oyza_          18 KLNDDELFRLLDDHNS--------LKRISSARVLQLRGG--Q---------DAVRLAIEFCSDKNYIRRDIGAFILGQIK   78 (276)
T ss_dssp             TSCHHHHHHHTTCSSH--------HHHHHHHHHHHHHCC--H---------HHHHHHHHHHTCSSHHHHHHHHHHHHHSC
T ss_pred             cCCHHHHHHHhcCCCH--------HHHHHHHHHHHhhCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence            3456778888887665        899999999987742  2         34788999999999999999999999887


Q ss_pred             cCCchhhHHhHhcCChHH-HHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHH
Q 005282          222 FKNDENKKLIVECNALPT-LVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALL  300 (704)
Q Consensus       222 ~~~~~~~~~~~~~~~i~~-L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~  300 (704)
                      .. .......     ++. +..+++++++.++..++.+|+++....+....     ..++.+...+.+.++.++..++.+
T Consensus        79 ~~-~~~~~~~-----~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~-----~~~~~l~~~~~d~~~~vr~~a~~~  147 (276)
T d1oyza_          79 IC-KKCEDNV-----FNILNNMALNDKSACVRATAIESTAQRCKKNPIYSP-----KIVEQSQITAFDKSTNVRRATAFA  147 (276)
T ss_dssp             CC-TTTHHHH-----HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred             cc-cccccch-----HHHHHHHHhcCCChhHHHHHHHHHHHHccccchhhH-----HHHHHHHHHhcCcchHHHHHHHHH
Confidence            42 2221111     222 33456788999999999999998765433222     345677777888888888888877


Q ss_pred             HHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHH
Q 005282          301 LGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNA  380 (704)
Q Consensus       301 L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a  380 (704)
                      ++...           +...++.+..++...+..++..+..++..+......        ..+.+...+.+.+..++..+
T Consensus       148 l~~~~-----------~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~  208 (276)
T d1oyza_         148 ISVIN-----------DKATIPLLINLLKDPNGDVRNWAAFAININKYDNSD--------IRDCFVEMLQDKNEEVRIEA  208 (276)
T ss_dssp             HHTC--------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHH--------HHHHHHHHTTCSCHHHHHHH
T ss_pred             Hhhcc-----------hHHHHHHHHHhcccccchhhhhHHHHHHhhhccccc--------cchhhhhhhhhhhhhhhhhh
Confidence            76542           134678888888888888888888888776655432        33456677788888898888


Q ss_pred             HHHHHHcccCCchhhHHHhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHHHHHHHHh
Q 005282          381 AFALYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAH  460 (704)
Q Consensus       381 ~~~L~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~  460 (704)
                      ..++..+..                                           ...++.|+..+.+  +.++..++++|+.
T Consensus       209 ~~al~~~~~-------------------------------------------~~~~~~L~~~l~d--~~vr~~a~~aL~~  243 (276)
T d1oyza_         209 IIGLSYRKD-------------------------------------------KRVLSVLCDELKK--NTVYDDIIEAAGE  243 (276)
T ss_dssp             HHHHHHTTC-------------------------------------------GGGHHHHHHHHTS--SSCCHHHHHHHHH
T ss_pred             ccccchhhh-------------------------------------------hhhHHHHHHHhCC--hHHHHHHHHHHHH
Confidence            888877621                                           0134456666653  4588899999999


Q ss_pred             ccCCCccceeeecCCcHHHHHHHHhh-cchhhhhhHHHHHH
Q 005282          461 LCAPDDCKTIFIDNNGLELLLGLLES-TSVKQREESSVALY  500 (704)
Q Consensus       461 l~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~  500 (704)
                      +.          +.+.++.|..++.+ ++.+++..|..+|.
T Consensus       244 ig----------~~~~~~~L~~~l~~~~d~~vr~~A~~~L~  274 (276)
T d1oyza_         244 LG----------DKTLLPVLDTMLYKFDDNEIITSAIDKLK  274 (276)
T ss_dssp             HC----------CGGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred             cC----------CHHHHHHHHHHHccCCCHHHHHHHHHHHc
Confidence            84          34689999998876 57889988887763

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=2.7e-08  Score=103.07  Aligned_cols=360  Identities=11%  Similarity=0.079  Sum_probs=214.6

Q ss_pred             HHHHHHhhhccCCchhhHHHHHHHHHHHHHhhcC--hhHHHHH----------HhCCChHHHHhhccCCCcCCCCCCCCc
Q 005282           48 RAQIDILNSKFSSDETDRAAAKTASHALVEFAKN--EEIVSLI----------VDNGAVPALVEHLQTPPQLTNAQIPYE  115 (704)
Q Consensus        48 ~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~--~~~~~~l----------~~~g~i~~L~~lL~~~~~~~~~~~~~d  115 (704)
                      +..+..|..++.+.+.+..++..|+..|.+....  +......          ....+.+.+++.+.+.+.         
T Consensus        33 ~~~~~~l~~il~~~~~~~~~R~~A~i~lk~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~~~~~~~---------  103 (458)
T d1ibrb_          33 PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETY---------  103 (458)
T ss_dssp             HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCS---------
T ss_pred             hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccCchhhhHHhhhhccCCHHHHHHHHHHHHhccCCCcH---------
Confidence            4445555555544444555677777777765541  2111111          112345567777777653         


Q ss_pred             hHHHHHHHHHHHhhcC--ChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccC
Q 005282          116 HEVEKECAFALGLLAV--KPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVED  193 (704)
Q Consensus       116 ~~v~~~a~~~L~~l~~--~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~  193 (704)
                        .+..++.+++.++.  .+..    .-.+.++.+.+.+.+....      +..+..++.++..++.........-....
T Consensus       104 --~~~~~~~~~~~i~~~~~~~~----~~~~~~~~l~~~l~~~~~~------~~~~~~~l~~l~~~~~~~~~~~~~~~~~~  171 (458)
T d1ibrb_         104 --RPSSASQCVAGIACAEIPVN----QWPELIPQLVANVTNPNST------EHMKESTLEAIGYICQDIDPEQLQDKSNE  171 (458)
T ss_dssp             --SSCSHHHHHHHHHHHHGGGT----CCTTHHHHHHHHHHCTTCC------HHHHHHHHHHHHHHHHHSCGGGTGGGHHH
T ss_pred             --HHHHHHHHHHHHHHHhCCcc----cCcchhHHHHHHHHhhcch------HHHHHHHHHHHHHHHhhccchhhhhhHHH
Confidence              23345555555551  1110    0124567777777665442      36778888899888754433222223334


Q ss_pred             CcHHHHHHhcC--CCHHHHHHHHHHHHHhccCCchhhH-HhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhH
Q 005282          194 GIPPLVELLKF--VDVKVQRAAAGALRTLAFKNDENKK-LIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIK  270 (704)
Q Consensus       194 ~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~  270 (704)
                      .++.++..+.+  .+..++..++.++..+......... ........+.+...+.+++++++..++.++..++...+...
T Consensus       172 il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~  251 (458)
T d1ibrb_         172 ILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYM  251 (458)
T ss_dssp             HHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGC
T ss_pred             HHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHH
Confidence            56777777764  4678999999999999863332211 11222346677778889999999999999999986554432


Q ss_pred             HHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcc--------------------hHHHHhcCChHHHHHhhCC
Q 005282          271 KEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNS--------------------KVHIVQRGAVRPLIEMLQS  330 (704)
Q Consensus       271 ~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~--------------------~~~~~~~~~i~~L~~ll~~  330 (704)
                      ...+.......+...+.+.+.+++..++..+..++......                    ..........+.+...+..
T Consensus       252 ~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~  331 (458)
T d1ibrb_         252 ETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTK  331 (458)
T ss_dssp             TTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhc
Confidence            22222223344556667778888888888887775321000                    0001111233444444432


Q ss_pred             -------CCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcccCCchhhHHHhhCCc
Q 005282          331 -------PDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADLVRVGGV  403 (704)
Q Consensus       331 -------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~g~i  403 (704)
                             .+..++..+..++..++......  +. ...++.+.+.++++++.+|..++.+|+.++......       .+
T Consensus       332 ~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~--~~-~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~-------~~  401 (458)
T d1ibrb_         332 QDENDDDDDWNPCKAAGVCLMLLATCCEDD--IV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPS-------QL  401 (458)
T ss_dssp             CCSSCCTTCCSHHHHHHHHHHHHHHHTTTT--HH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTT-------TT
T ss_pred             chhhhccccccHHHHHHHHHHHHHHhccHh--hh-hHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHh-------HH
Confidence                   23357888888888887543221  11 223455667888999999999999999987532110       01


Q ss_pred             ccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHHHHHHHHhccC
Q 005282          404 QKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCA  463 (704)
Q Consensus       404 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~  463 (704)
                      ...+                         ..+++.++..+.++++.||..|+++|+.++.
T Consensus       402 ~~~l-------------------------~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~  436 (458)
T d1ibrb_         402 KPLV-------------------------IQAMPTLIELMKDPSVVVRDTAAWTVGRICE  436 (458)
T ss_dssp             CTTT-------------------------TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHH-------------------------HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            1111                         1266788899999999999999999999964

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=98.90  E-value=1.1e-07  Score=90.92  Aligned_cols=243  Identities=16%  Similarity=0.087  Sum_probs=177.8

Q ss_pred             hhHHHHHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHc
Q 005282           63 TDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDT  142 (704)
Q Consensus        63 ~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~  142 (704)
                      .++.++..|+..|..+.. +         .+++.|++++++++.          .++..|+.+|+.+..........   
T Consensus        31 ~~~~vR~~A~~~L~~~~~-~---------~~~~~l~~~l~d~~~----------~vr~~a~~aL~~l~~~~~~~~~~---   87 (276)
T d1oyza_          31 HNSLKRISSARVLQLRGG-Q---------DAVRLAIEFCSDKNY----------IRRDIGAFILGQIKICKKCEDNV---   87 (276)
T ss_dssp             SSHHHHHHHHHHHHHHCC-H---------HHHHHHHHHHTCSSH----------HHHHHHHHHHHHSCCCTTTHHHH---
T ss_pred             CCHHHHHHHHHHHHhhCC-H---------hHHHHHHHHHcCCCH----------HHHHHHHHHHHHhccccccccch---
Confidence            556789999999987653 2         237999999998765          99999999999998433332222   


Q ss_pred             CCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhcc
Q 005282          143 GALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAF  222 (704)
Q Consensus       143 g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~  222 (704)
                        ++.+...+.+..+       +.++..++.+|++++...+..     ....++.+...+.+.++.++..++.++.....
T Consensus        88 --~~~l~~~~l~d~~-------~~vr~~a~~aL~~~~~~~~~~-----~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~  153 (276)
T d1oyza_          88 --FNILNNMALNDKS-------ACVRATAIESTAQRCKKNPIY-----SPKIVEQSQITAFDKSTNVRRATAFAISVIND  153 (276)
T ss_dssp             --HHHHHHHHHHCSC-------HHHHHHHHHHHHHHHHHCGGG-----HHHHHHHHHHHTTCSCHHHHHHHHHHHHTC--
T ss_pred             --HHHHHHHHhcCCC-------hhHHHHHHHHHHHHccccchh-----hHHHHHHHHHHhcCcchHHHHHHHHHHhhcch
Confidence              2344554443332       389999999999998654432     22456778888889999999988888776542


Q ss_pred             CCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHH
Q 005282          223 KNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLG  302 (704)
Q Consensus       223 ~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~  302 (704)
                                 ...++.+..++.+.+..++..+..++..+......         ..+.+...+.+.+..++..+..++.
T Consensus       154 -----------~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~al~  213 (276)
T d1oyza_         154 -----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNSD---------IRDCFVEMLQDKNEEVRIEAIIGLS  213 (276)
T ss_dssp             ------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHH---------HHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             -----------HHHHHHHHHhcccccchhhhhHHHHHHhhhccccc---------cchhhhhhhhhhhhhhhhhhccccc
Confidence                       34678888999999999999999988887655432         2445667778888889999888887


Q ss_pred             HHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcC-CChhHHHHHH
Q 005282          303 QFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDS-KNGSLQHNAA  381 (704)
Q Consensus       303 ~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~-~~~~v~~~a~  381 (704)
                      .+.           ...+++.|+..+.++  .++..++++|+.+..          .+.++.|..++.+ ++.+++..|+
T Consensus       214 ~~~-----------~~~~~~~L~~~l~d~--~vr~~a~~aL~~ig~----------~~~~~~L~~~l~~~~d~~vr~~A~  270 (276)
T d1oyza_         214 YRK-----------DKRVLSVLCDELKKN--TVYDDIIEAAGELGD----------KTLLPVLDTMLYKFDDNEIITSAI  270 (276)
T ss_dssp             HTT-----------CGGGHHHHHHHHTSS--SCCHHHHHHHHHHCC----------GGGHHHHHHHHTTSSCCHHHHHHH
T ss_pred             hhh-----------hhhhHHHHHHHhCCh--HHHHHHHHHHHHcCC----------HHHHHHHHHHHccCCCHHHHHHHH
Confidence            753           134688888888754  478899999988752          3467888888865 5788999998


Q ss_pred             HHHH
Q 005282          382 FALY  385 (704)
Q Consensus       382 ~~L~  385 (704)
                      .+|.
T Consensus       271 ~~L~  274 (276)
T d1oyza_         271 DKLK  274 (276)
T ss_dssp             HHHT
T ss_pred             HHHc
Confidence            8874

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=1.1e-06  Score=98.89  Aligned_cols=400  Identities=13%  Similarity=0.086  Sum_probs=238.3

Q ss_pred             HHHHHHhhhccCCchhhHHHHHHHHHHHHHhhcC--hhHHHH----------HHhCCChHHHHhhccCCCcCCCCCCCCc
Q 005282           48 RAQIDILNSKFSSDETDRAAAKTASHALVEFAKN--EEIVSL----------IVDNGAVPALVEHLQTPPQLTNAQIPYE  115 (704)
Q Consensus        48 ~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~--~~~~~~----------l~~~g~i~~L~~lL~~~~~~~~~~~~~d  115 (704)
                      +..+..|..++.+.+.+..++..|+-.|.+....  +.....          -....+...+++.+.+++.         
T Consensus        34 ~~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~~~~~~~~~~~~~~~i~~~~k~~ik~~ll~~l~~~~~---------  104 (876)
T d1qgra_          34 PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGTETY---------  104 (876)
T ss_dssp             HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTTCCS---------
T ss_pred             hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccchhhhhhcccccCCHHHHHHHHHHHHHHhcCCcH---------
Confidence            4555566666655555666788888888876531  111110          0112235677888877553         


Q ss_pred             hHHHHHHHHHHHhhcC--ChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccC
Q 005282          116 HEVEKECAFALGLLAV--KPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVED  193 (704)
Q Consensus       116 ~~v~~~a~~~L~~l~~--~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~  193 (704)
                        ++..++.+++.++.  .|...    =.+.++.|.+.+.+++..      ..++..++.+|..++..-......-....
T Consensus       105 --~~~~~a~~i~~i~~~~~p~~~----Wpeli~~L~~~l~~~~~~------~~~~~~~l~~l~~i~~~~~~~~~~~~~~~  172 (876)
T d1qgra_         105 --RPSSASQCVAGIACAEIPVNQ----WPELIPQLVANVTNPNST------EHMKESTLEAIGYICQDIDPEQLQDKSNE  172 (876)
T ss_dssp             --SSCHHHHHHHHHHHHHGGGTC----CTTHHHHHHHHHHCTTCC------HHHHHHHHHHHHHHHHHSCHHHHGGGHHH
T ss_pred             --HHHHHHHHHHHHHHHHCCccc----cHHHHHHHHHHhcCCCCc------HHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence              45567888888872  22110    024577888888765442      26788899999999853322111122234


Q ss_pred             CcHHHHHHhcC--CCHHHHHHHHHHHHHhccCCchhhHH-hHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhH
Q 005282          194 GIPPLVELLKF--VDVKVQRAAAGALRTLAFKNDENKKL-IVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIK  270 (704)
Q Consensus       194 ~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~~~~~~-~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~  270 (704)
                      .++.++..+.+  .+..++..++.++.+........... ....-+++.+...+.++++.++..++.++..++...+...
T Consensus       173 il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~  252 (876)
T d1qgra_         173 ILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYM  252 (876)
T ss_dssp             HHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGC
T ss_pred             HHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHH
Confidence            57778887764  45789999999998876532221111 1111246667777888999999999999999987655544


Q ss_pred             HHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcc--------------------hHHHHhcCChHHHHHhhCC
Q 005282          271 KEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNS--------------------KVHIVQRGAVRPLIEMLQS  330 (704)
Q Consensus       271 ~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~--------------------~~~~~~~~~i~~L~~ll~~  330 (704)
                      .......+...+...+.+...+++..+...+..++......                    ........+++.+...+..
T Consensus       253 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~  332 (876)
T d1qgra_         253 ETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTK  332 (876)
T ss_dssp             HHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHh
Confidence            44444445556666777777888777777666665311100                    0111112233444444432


Q ss_pred             -------CCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcccCCc--hhhHHHhhC
Q 005282          331 -------PDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNED--NVADLVRVG  401 (704)
Q Consensus       331 -------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~--~~~~l~~~g  401 (704)
                             .+..++..+..++..++......  +. ...++.+.+.+.+.++..+..++.++..++....  ......   
T Consensus       333 ~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~--~~-~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~---  406 (876)
T d1qgra_         333 QDENDDDDDWNPCKAAGVCLMLLATCCEDD--IV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV---  406 (876)
T ss_dssp             CCSSCCTTCCCHHHHHHHHHHHHHHHHGGG--GH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH---
T ss_pred             cccccccccchHHHHHHHHHHHHHHHhhhh--hh-hhhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHH---
Confidence                   12346777777777776432211  11 1123445566678888999999888888764322  111111   


Q ss_pred             CcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHHHHHHHHhccCCCccceeeecCCcHHHHH
Q 005282          402 GVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPDDCKTIFIDNNGLELLL  481 (704)
Q Consensus       402 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~L~  481 (704)
                                                     ..+++.+...+.++++.++..++++++.++..-....  .....++.++
T Consensus       407 -------------------------------~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~--~~~~~~~~~~  453 (876)
T d1qgra_         407 -------------------------------IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAA--INDVYLAPLL  453 (876)
T ss_dssp             -------------------------------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGT--SSTTTHHHHH
T ss_pred             -------------------------------HHHHHHHHHhhcCCccHHHHHHHHHHHHHHHHcchhh--hhHHHhhhHH
Confidence                                           1256677888899999999999999999965322111  1122333333


Q ss_pred             HHHh---hcchhhhhhHHHHHHHHhhhcC
Q 005282          482 GLLE---STSVKQREESSVALYKLATKAT  507 (704)
Q Consensus       482 ~ll~---~~~~~~~~~a~~~L~~L~~~~~  507 (704)
                      ..+.   ++++.++..+++++.++.....
T Consensus       454 ~~l~~~l~~~~~v~~~~~~~l~~l~~~~~  482 (876)
T d1qgra_         454 QCLIEGLSAEPRVASNVCWAFSSLAEAAY  482 (876)
T ss_dssp             HHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence            3332   3578889999999998876543

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=1.5e-06  Score=97.67  Aligned_cols=392  Identities=14%  Similarity=0.073  Sum_probs=230.2

Q ss_pred             HHHHhhhccCCchhhHHHHHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhh
Q 005282           50 QIDILNSKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLL  129 (704)
Q Consensus        50 l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l  129 (704)
                      +++.|..+++.+   ...+..|-..|..+..+..       .|.+..|.+++.+.+.        +..+|..|+-.|.|.
T Consensus         3 l~~~L~~~~s~d---~~~r~~Ae~~L~~~~~~~~-------~~f~~~L~~i~~~~~~--------~~~iR~~A~i~lKn~   64 (876)
T d1qgra_           3 LITILEKTVSPD---RLELEAAQKFLERAAVENL-------PTFLVELSRVLANPGN--------SQVARVAAGLQIKNS   64 (876)
T ss_dssp             HHHHHHGGGCSC---HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHCTTS--------CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCcC---HHHHHHHHHHHHHHHhcCh-------hHHHHHHHHHHhcCCC--------CHHHHHHHHHHHHHH
Confidence            456666666543   3456777777776654200       1346788888877665        568999999999887


Q ss_pred             c-CC-hhhHHHH----------HHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHH
Q 005282          130 A-VK-PEHQQII----------VDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPP  197 (704)
Q Consensus       130 ~-~~-~~~~~~~----------~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~  197 (704)
                      . .. .......          .....-..+++.+.+.+         ..+..++.+++.++...-+...+   .+.++.
T Consensus        65 i~~~~~~~~~~~~~~~~~i~~~~k~~ik~~ll~~l~~~~---------~~~~~~a~~i~~i~~~~~p~~~W---peli~~  132 (876)
T d1qgra_          65 LTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGTET---------YRPSSASQCVAGIACAEIPVNQW---PELIPQ  132 (876)
T ss_dssp             HCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTTCC---------SSSCHHHHHHHHHHHHHGGGTCC---TTHHHH
T ss_pred             hhccccchhhhhhcccccCCHHHHHHHHHHHHHHhcCCc---------HHHHHHHHHHHHHHHHHCCcccc---HHHHHH
Confidence            7 22 2111110          11123345666666543         23345677777777421111111   356888


Q ss_pred             HHHHhcCC--CHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcC--CCHHHHHHHHHHHHHHhcCChhhHH-H
Q 005282          198 LVELLKFV--DVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRS--EDASVHFEAVGVIGNLVHSSPSIKK-E  272 (704)
Q Consensus       198 L~~ll~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~-~  272 (704)
                      |.+.+.++  +..++..++.++..++..-......-....+++.++..+.+  ++..++..++.++.+.......... .
T Consensus       133 L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~  212 (876)
T d1qgra_         133 LVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKE  212 (876)
T ss_dssp             HHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSH
T ss_pred             HHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence            88888754  46788899999999875222211111223357778887764  4568999999999887754322111 1


Q ss_pred             HHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCch
Q 005282          273 VILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHN  352 (704)
Q Consensus       273 ~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~  352 (704)
                      ....-.++.+...+.+++++++..++.++..++...++.........+.+.+.....+...+++..+...+..++.....
T Consensus       213 ~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  292 (876)
T d1qgra_         213 SERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMD  292 (876)
T ss_dssp             HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence            11122456677778888999999999999999876655544444445566677777888888888888877777642211


Q ss_pred             hhh---------------------HHhhCChHHHHHhhcC-------CChhHHHHHHHHHHHcccCCchhhHHHhhCCcc
Q 005282          353 QAG---------------------IAQDGGILPLLKLLDS-------KNGSLQHNAAFALYGLADNEDNVADLVRVGGVQ  404 (704)
Q Consensus       353 ~~~---------------------~~~~~~~~~L~~ll~~-------~~~~v~~~a~~~L~~l~~~~~~~~~l~~~g~i~  404 (704)
                      ...                     ......++.+...+..       .+..++..+..++..++..              
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~--------------  358 (876)
T d1qgra_         293 LAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATC--------------  358 (876)
T ss_dssp             HHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHH--------------
T ss_pred             HHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHH--------------
Confidence            000                     0000111111111111       1112333333333333210              


Q ss_pred             cccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHHHHHHHHhccCCCccce-eeecCCcHHHHHHH
Q 005282          405 KLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPDDCKT-IFIDNNGLELLLGL  483 (704)
Q Consensus       405 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~-~l~~~~~i~~L~~l  483 (704)
                                            ....+...+++.+...+.+.++..+..++.+++.+........ .-.-...++.+...
T Consensus       359 ----------------------~~~~~~~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~  416 (876)
T d1qgra_         359 ----------------------CEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIEL  416 (876)
T ss_dssp             ----------------------HGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHH
T ss_pred             ----------------------hhhhhhhhhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHh
Confidence                                  0000111233445555667889999999999998865432221 11123467888888


Q ss_pred             HhhcchhhhhhHHHHHHHHhhhcC
Q 005282          484 LESTSVKQREESSVALYKLATKAT  507 (704)
Q Consensus       484 l~~~~~~~~~~a~~~L~~L~~~~~  507 (704)
                      +.++++.++..|.+++..++...+
T Consensus       417 l~d~~~~vr~~a~~~l~~~~~~~~  440 (876)
T d1qgra_         417 MKDPSVVVRDTAAWTVGRICELLP  440 (876)
T ss_dssp             HTCSSHHHHHHHHHHHHHHHHHCG
T ss_pred             hcCCccHHHHHHHHHHHHHHHHcc
Confidence            999999999999999999988653

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.62  E-value=3.2e-06  Score=94.62  Aligned_cols=395  Identities=14%  Similarity=0.102  Sum_probs=226.2

Q ss_pred             HHHHHHhhhc-cCCchhhHHHHHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHH
Q 005282           48 RAQIDILNSK-FSSDETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFAL  126 (704)
Q Consensus        48 ~~l~~~l~~~-~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L  126 (704)
                      .++.+.|... ++.+   ..++.+|-..|..+..+..       .+.+..|.+++.+.+.        +..+|..|+..|
T Consensus         4 ~~~~~~L~~~~~s~d---~~~r~~Ae~~L~~~~~~~~-------~~~~~~l~~il~~~~~--------~~~~r~~A~i~l   65 (861)
T d2bpta1           4 AEFAQLLENSILSPD---QNIRLTSETQLKKLSNDNF-------LQFAGLSSQVLIDENT--------KLEGRILAALTL   65 (861)
T ss_dssp             HHHHHHHHHHHHCSS---HHHHHHHHHHHHHHHHHCH-------HHHHHHHHHHHTCTTS--------CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCC---HHHHHHHHHHHHHHHhcCc-------hHHHHHHHHHHHcCCC--------CHHHHHHHHHHH
Confidence            3455666553 3433   3456777777776654210       1236788888887765        568999999999


Q ss_pred             Hhhc-CChhhH-HHH----H-------HcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccC
Q 005282          127 GLLA-VKPEHQ-QII----V-------DTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVED  193 (704)
Q Consensus       127 ~~l~-~~~~~~-~~~----~-------~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~  193 (704)
                      .|.. ...... ...    .       ....-..+++.+.+++.        .++..++.+++.++...-+...+   ..
T Consensus        66 kn~i~~~~~~~~~~~~~~~~~~i~~~~~~~ik~~ll~~l~~~~~--------~vr~~~a~~i~~i~~~~~p~~~w---pe  134 (861)
T d2bpta1          66 KNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALVSIEP--------RIANAAAQLIAAIADIELPHGAW---PE  134 (861)
T ss_dssp             HTTTCCSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTCSSH--------HHHHHHHHHHHHHHHHHGGGTCC---HH
T ss_pred             HHHhhcccchhhhhHHhhhHhcCCHHHHHHHHHHHHHHHcCCCH--------HHHHHHHHHHHHHHHHhCCcCch---HH
Confidence            8887 222111 100    0       01122445556655433        88999999999987422111000   13


Q ss_pred             CcHHHHHHhcCC-CHHHHHHHHHHHHHhccCCchhhHHhHh--cCChHHHHHhhc--CCCHHHHHHHHHHHHHHhcCChh
Q 005282          194 GIPPLVELLKFV-DVKVQRAAAGALRTLAFKNDENKKLIVE--CNALPTLVLMLR--SEDASVHFEAVGVIGNLVHSSPS  268 (704)
Q Consensus       194 ~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~~~i~~L~~lL~--~~~~~v~~~a~~~L~~l~~~~~~  268 (704)
                      .++.|+..+.++ +..++..++.++..++...+.....+..  ...+..++..+.  ..+..++..++.++.++....+.
T Consensus       135 li~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~  214 (861)
T d2bpta1         135 LMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKN  214 (861)
T ss_dssp             HHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHH
T ss_pred             HHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhH
Confidence            466677777754 4567888999999998533222111111  112334444443  45688999999999998765432


Q ss_pred             hHH-HHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 005282          269 IKK-EVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLA  347 (704)
Q Consensus       269 ~~~-~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~  347 (704)
                      ... .......++.+...+.+++++++..++.++..++...+.........-+...+....++.++.++..+...+..++
T Consensus       215 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~v~~~~~~~l~~l~  294 (861)
T d2bpta1         215 NMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTIC  294 (861)
T ss_dssp             HHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred             hHHhhhhhhHHHHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH
Confidence            211 1112335667778888999999999999999988654443332222222333445556788899999998888876


Q ss_pred             cCCchhhhHH-----------------hhCChHHHHHhhcC-------CChhHHHHHHHHHHHcccCCchhhHHHhhCCc
Q 005282          348 QDTHNQAGIA-----------------QDGGILPLLKLLDS-------KNGSLQHNAAFALYGLADNEDNVADLVRVGGV  403 (704)
Q Consensus       348 ~~~~~~~~~~-----------------~~~~~~~L~~ll~~-------~~~~v~~~a~~~L~~l~~~~~~~~~l~~~g~i  403 (704)
                      ..........                 -...++.+...+..       .+...+..+..++..++.              
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~--------------  360 (861)
T d2bpta1         295 EEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQ--------------  360 (861)
T ss_dssp             HHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHH--------------
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHh--------------
Confidence            4321111000                 00111222222211       111233333333333321              


Q ss_pred             ccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHHHHHHHHhccCCCccce-eeecCCcHHHHHH
Q 005282          404 QKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPDDCKT-IFIDNNGLELLLG  482 (704)
Q Consensus       404 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~-~l~~~~~i~~L~~  482 (704)
                                            .....+...+.+.+.....+.++..+..++.+++.+........ ...-...++.++.
T Consensus       361 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~  418 (861)
T d2bpta1         361 ----------------------NCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILN  418 (861)
T ss_dssp             ----------------------HHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHH
T ss_pred             ----------------------hcchhhhhhhcchhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHH
Confidence                                  00011111123344455567888999999999999865432211 1011245778888


Q ss_pred             HHhhcchhhhhhHHHHHHHHhhhcC
Q 005282          483 LLESTSVKQREESSVALYKLATKAT  507 (704)
Q Consensus       483 ll~~~~~~~~~~a~~~L~~L~~~~~  507 (704)
                      .+.+.++.+|..|.+++..++...+
T Consensus       419 ~l~d~~~~vr~~a~~~l~~l~~~~~  443 (861)
T d2bpta1         419 LMNDQSLQVKETTAWCIGRIADSVA  443 (861)
T ss_dssp             GGGCSCHHHHHHHHHHHHHHHHHHG
T ss_pred             HhcCcchhhhhHHHHHHHHHHHHhc
Confidence            8888999999999999999987653

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=9.8e-07  Score=103.27  Aligned_cols=412  Identities=11%  Similarity=0.066  Sum_probs=235.6

Q ss_pred             HHHHhhhccCCchhhHHHHHHHHHHHHHhhcC--hhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHH
Q 005282           50 QIDILNSKFSSDETDRAAAKTASHALVEFAKN--EEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALG  127 (704)
Q Consensus        50 l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~--~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~  127 (704)
                      +++.|...+++  .+..++..|+.+|..++..  +.....     +++.|+..+.+.+.          +++..+..+|.
T Consensus        46 i~~~ll~~L~D--~~~~Vq~~A~k~l~~l~~~~~~~~~~~-----l~~~L~~~l~~~~~----------~~r~~~~~~L~  108 (1207)
T d1u6gc_          46 VVKMILKLLED--KNGEVQNLAVKCLGPLVSKVKEYQVET-----IVDTLCTNMLSDKE----------QLRDISSIGLK  108 (1207)
T ss_dssp             HHHHHHHHTTC--SSHHHHHHHHHHHHHHHTTSCHHHHHH-----HHHHHHHHTTCSSS----------HHHHHHHHHHH
T ss_pred             HHHHHHHHhCC--CCHHHHHHHHHHHHHHHHhCcHhhHHH-----HHHHHHHHhcCCch----------hhhHHHHHHHH
Confidence            45555555543  3455788888999888763  333333     37888888877765          78888888877


Q ss_pred             hhc-CChh-hHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCC
Q 005282          128 LLA-VKPE-HQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFV  205 (704)
Q Consensus       128 ~l~-~~~~-~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~  205 (704)
                      .+. .-+. ....-......+.++..+.+......   .+.++..++.++..+....+..-. -.....++.++..+.++
T Consensus       109 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~---~~~v~~~al~~l~~l~~~~g~~l~-~~~~~il~~l~~~l~~~  184 (1207)
T d1u6gc_         109 TVIGELPPASSGSALAANVCKKITGRLTSAIAKQE---DVSVQLEALDIMADMLSRQGGLLV-NFHPSILTCLLPQLTSP  184 (1207)
T ss_dssp             HHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCS---CHHHHHHHHHHHHHHHHHTCSSCT-TTHHHHHHHHGGGGGCS
T ss_pred             HHHHhcccccccchhHHHHHHHHHHHHHHhhcCCC---CHHHHHHHHHHHHHHHHHhhHhhH-HHHHHHHHHHHHHhCCC
Confidence            665 2111 10000001122333333333222111   237888888888888753332111 11123566777788899


Q ss_pred             CHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhc-CCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHH
Q 005282          206 DVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLR-SEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIG  284 (704)
Q Consensus       206 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~  284 (704)
                      ++.+|..|+.+|..++...+...    -...++.++..+. +.+..++..++.+++.++...+..... .-..+++.++.
T Consensus       185 ~~~vR~~A~~~l~~l~~~~~~~~----~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-~l~~i~~~l~~  259 (1207)
T d1u6gc_         185 RLAVRKRTIIALGHLVMSCGNIV----FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGE-YLEKIIPLVVK  259 (1207)
T ss_dssp             SHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTT-SCTTHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHCCHHH----HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcchhhHH-HHHHHHHHHHH
Confidence            99999999999999986333211    1224666666554 455667777888888887544332110 01356888889


Q ss_pred             HhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHh-------------------------------------
Q 005282          285 LLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEM-------------------------------------  327 (704)
Q Consensus       285 ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l-------------------------------------  327 (704)
                      .+.+.+.+++..++.++..++...+....... ..+++.+...                                     
T Consensus       260 ~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~-~~ii~~~l~~l~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (1207)
T d1u6gc_         260 FCNVDDDELREYCIQAFESFVRRCPKEVYPHV-STIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSD  338 (1207)
T ss_dssp             HHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHH-HHHHHHHTTCCCCC---------------------------------
T ss_pred             HhcCccHHHHHHHHHHHHHHHHhChhhhhhhH-HHHHHHHHHHHhcCcchhhhhHHHHHhhhhhhccchhhhhHHHHHhh
Confidence            99999999999999999888765443322110 0111111111                                     


Q ss_pred             hCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcccC-CchhhHHHhhCCcccc
Q 005282          328 LQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADN-EDNVADLVRVGGVQKL  406 (704)
Q Consensus       328 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~l~~~g~i~~l  406 (704)
                      ..+....++..++.+|..+.........-.-...++.++..+.+.++.++..+..++..+... ................
T Consensus       339 ~~d~s~~vR~~a~~~L~~l~~~~~~~l~~~~~~~~~~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~  418 (1207)
T d1u6gc_         339 DDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQG  418 (1207)
T ss_dssp             ---CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------C
T ss_pred             hhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhccchhhhhhchHHHHhh
Confidence            112345789999999999887654433334456788899999999999999999998887531 1111111111000000


Q ss_pred             cccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHHHHHHHHhccCC--CccceeeecCCcHHHHHHHH
Q 005282          407 QDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAP--DDCKTIFIDNNGLELLLGLL  484 (704)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~~~l~~~~~i~~L~~ll  484 (704)
                              ..   ....+    ......+++.+...+.+.++.++..+..++..+...  ......+  ...++.+...+
T Consensus       419 --------~~---~~~~l----~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l--~~~~~~i~~~l  481 (1207)
T d1u6gc_         419 --------ET---PLTML----QSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHI--PVLVPGIIFSL  481 (1207)
T ss_dssp             --------CC---HHHHH----HHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGH--HHHHHHHHHHT
T ss_pred             --------cc---hHHHH----HHHhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHcchHHHHhh--HhhHHHHHHHH
Confidence                    00   00000    111223566677788888999999999999888432  1111111  12344555555


Q ss_pred             hh--cchhhhhhHHHHHHHHhhh
Q 005282          485 ES--TSVKQREESSVALYKLATK  505 (704)
Q Consensus       485 ~~--~~~~~~~~a~~~L~~L~~~  505 (704)
                      ..  ....++..+...+..+...
T Consensus       482 ~~~~~~~~~~~~al~~l~~l~~~  504 (1207)
T d1u6gc_         482 NDKSSSSNLKIDALSCLYVILCN  504 (1207)
T ss_dssp             TCSSSCHHHHHHHHHHHHHHHHS
T ss_pred             hcccchhHHHHHHHHHHHHHHHh
Confidence            44  2334666777777777653

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.58  E-value=1.9e-05  Score=88.16  Aligned_cols=394  Identities=13%  Similarity=0.069  Sum_probs=229.8

Q ss_pred             HHHHHHhhhccCCchhhHHHHHHHHHHHHHhhcC------------------hhHHHHHHhCCChHHHHhhccCCCcCCC
Q 005282           48 RAQIDILNSKFSSDETDRAAAKTASHALVEFAKN------------------EEIVSLIVDNGAVPALVEHLQTPPQLTN  109 (704)
Q Consensus        48 ~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~------------------~~~~~~l~~~g~i~~L~~lL~~~~~~~~  109 (704)
                      +..+..|..++.+.+.+..++.-|+..|.+....                  ++.+..     +-..+++.+.+++.   
T Consensus        38 ~~~~~~l~~il~~~~~~~~~r~~A~i~lkn~i~~~~~~~~~~~~~~~~~~i~~~~~~~-----ik~~ll~~l~~~~~---  109 (861)
T d2bpta1          38 LQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQRWITQVSPEAKNQ-----IKTNALTALVSIEP---  109 (861)
T ss_dssp             HHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHSCHHHHHH-----HHHHHHHHHTCSSH---
T ss_pred             hHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcccchhhhhHHhhhHhcCCHHHHHH-----HHHHHHHHHcCCCH---
Confidence            3455556666655555666777788788776532                  122222     24556777776644   


Q ss_pred             CCCCCchHHHHHHHHHHHhhcC--ChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhh
Q 005282          110 AQIPYEHEVEKECAFALGLLAV--KPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKT  187 (704)
Q Consensus       110 ~~~~~d~~v~~~a~~~L~~l~~--~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~  187 (704)
                             .++..++.+++.++.  .|+..-    .+.++.|++.+.+...       ..++..++.+|..++........
T Consensus       110 -------~vr~~~a~~i~~i~~~~~p~~~w----peli~~L~~~~~s~~~-------~~~~~~al~~l~~i~e~~~~~~~  171 (861)
T d2bpta1         110 -------RIANAAAQLIAAIADIELPHGAW----PELMKIMVDNTGAEQP-------ENVKRASLLALGYMCESADPQSQ  171 (861)
T ss_dssp             -------HHHHHHHHHHHHHHHHHGGGTCC----HHHHHHHHHHTSTTSC-------HHHHHHHHHHHHHHHHTSSTTSS
T ss_pred             -------HHHHHHHHHHHHHHHHhCCcCch----HHHHHHHHHHhcCCCc-------HHHHHHHHHHHHHHHHHhhHHHH
Confidence                   899999999999982  222100    0123455555544332       26778889999999854332211


Q ss_pred             hhhc--cCCcHHHHHHhc--CCCHHHHHHHHHHHHHhccCCchhhHH-hHhcCChHHHHHhhcCCCHHHHHHHHHHHHHH
Q 005282          188 RVRV--EDGIPPLVELLK--FVDVKVQRAAAGALRTLAFKNDENKKL-IVECNALPTLVLMLRSEDASVHFEAVGVIGNL  262 (704)
Q Consensus       188 ~~~~--~~~i~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~~~~~~~-~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l  262 (704)
                      .+..  ...+..++..+.  ..+..++..++.++.++....+..... ......++.+...+.++++.++..++.++..+
T Consensus       172 ~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i  251 (861)
T d2bpta1         172 ALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKI  251 (861)
T ss_dssp             TTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHhcCCCHHHHHHHHHHHHHH
Confidence            1111  112233333333  456899999999999987633322111 11223467778888899999999999999999


Q ss_pred             hcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHH----------------HHhcCChHHHHH
Q 005282          263 VHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVH----------------IVQRGAVRPLIE  326 (704)
Q Consensus       263 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~----------------~~~~~~i~~L~~  326 (704)
                      +...+.........-+...+.....+.++.++..+...+..++.........                ..-...++.+..
T Consensus       252 ~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~  331 (861)
T d2bpta1         252 MSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLN  331 (861)
T ss_dssp             HHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            8654433222222222233345556777888888888777665321111000                011123455555


Q ss_pred             hhCC-------CCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHcccCCch--hhHH
Q 005282          327 MLQS-------PDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDN--VADL  397 (704)
Q Consensus       327 ll~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~--~~~l  397 (704)
                      .+..       .+...+..+..++..++.......  . ....+.+...+.+.++..+..+..++..++.....  ....
T Consensus       332 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~  408 (861)
T d2bpta1         332 LLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHI--L-EPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYY  408 (861)
T ss_dssp             HTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGG--H-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHH
T ss_pred             HHHHhhccccchhHHHHHHHHHHHHHHHhhcchhh--h-hhhcchhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhHHHH
Confidence            5542       233567777777777665332211  0 01123344556778889999999999988753321  1111


Q ss_pred             HhhCCcccccccccccccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHHHHHHHHhccCCCccceeeecCCcH
Q 005282          398 VRVGGVQKLQDGEFTVQPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPDDCKTIFIDNNGL  477 (704)
Q Consensus       398 ~~~g~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i  477 (704)
                      .                                  ..+++.++..+.+.++.++..++++++.++..-...  +.....+
T Consensus       409 l----------------------------------~~~l~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~  452 (861)
T d2bpta1         409 V----------------------------------HQALPSILNLMNDQSLQVKETTAWCIGRIADSVAES--IDPQQHL  452 (861)
T ss_dssp             H----------------------------------HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGG--SCTTTTH
T ss_pred             H----------------------------------HHHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhchh--hhhHHhh
Confidence            1                                  125667788888899999999999999985432111  1122334


Q ss_pred             HHHHHHHh---hcchhhhhhHHHHHHHHhhhc
Q 005282          478 ELLLGLLE---STSVKQREESSVALYKLATKA  506 (704)
Q Consensus       478 ~~L~~ll~---~~~~~~~~~a~~~L~~L~~~~  506 (704)
                      +.++..+.   ..++.++..+++++..+....
T Consensus       453 ~~ll~~l~~~~~~~~~~~~~~~~~~~~l~~~~  484 (861)
T d2bpta1         453 PGVVQACLIGLQDHPKVATNCSWTIINLVEQL  484 (861)
T ss_dssp             HHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHhccccChHHHHHHHHHHHHHHHHh
Confidence            44444332   356778888888888887654

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.56  E-value=4.9e-06  Score=82.06  Aligned_cols=343  Identities=12%  Similarity=0.113  Sum_probs=213.1

Q ss_pred             CcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhh---hhhccCC--cHHHHHHhcCCCHHHHHHHHHHHH
Q 005282          144 ALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKT---RVRVEDG--IPPLVELLKFVDVKVQRAAAGALR  218 (704)
Q Consensus       144 ~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~---~~~~~~~--i~~L~~ll~~~~~~~~~~a~~~L~  218 (704)
                      ++..++++|.....       +++.++.+..+..+..+++....   .+.+...  -+.+...+..++.-....+...+.
T Consensus        75 ~~~~~l~lL~~~sk-------~d~vqyvL~Li~dLL~~d~~~~~~~~~~~~~~~~~~~~f~~~l~~~d~~~~~~s~~i~~  147 (477)
T d1ho8a_          75 TLIPLIHLLSTSDN-------EDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVS  147 (477)
T ss_dssp             THHHHHHHHHSCCC-------HHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcCc-------HHHHHHHHHHHHHHHhcCcchhHHHHHHhhCccchhHHHHHhccCchhHHHHHHHHHHH
Confidence            56778888877554       37888888888877755443211   1111111  234555566677777788888888


Q ss_pred             HhccCCchhhHHhH-hcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHH--cCCHHHHHHHhcC-------
Q 005282          219 TLAFKNDENKKLIV-ECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVIL--AGALQPVIGLLSS-------  288 (704)
Q Consensus       219 ~l~~~~~~~~~~~~-~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~l~~L~~ll~~-------  288 (704)
                      .++..........- .......+-.+....+.+....++.++..+... +..+..+..  ...++.++..|..       
T Consensus       148 ll~~~~~~~~~~~e~l~~~~~~l~~l~~~~~~~~~~i~v~~lq~llr~-~~~R~~fw~~~~~~~~~l~~il~~a~~~~~~  226 (477)
T d1ho8a_         148 LLVQNGLHNVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVI-PEYRDVIWLHEKKFMPTLFKILQRATDSQLA  226 (477)
T ss_dssp             HHTSTTTCCHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTS-HHHHHHHHTTHHHHHHHHHHHHHHHHC----
T ss_pred             HHHhccccccchHHHHHHhhHHHHHhhcccccchHHHHHHHHHHHhcC-ccHHHHHHHcccchHHHHHHHHHHHhccccc
Confidence            88753333222111 111233334444677888888899999988866 666666643  3345555555532       


Q ss_pred             ----------CChhHHHHHHHHHHHHhccCCcchHHHHhc--CChHHHHHhhC-CCCHHHHHHHHHHHHHhhcCCch--h
Q 005282          289 ----------SCSESKREAALLLGQFAAADSNSKVHIVQR--GAVRPLIEMLQ-SPDSQLKEMSAFALGRLAQDTHN--Q  353 (704)
Q Consensus       289 ----------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~--~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~--~  353 (704)
                                ....++..++.+++-++. ++.....+...  +.++.|+.+++ +...++.+.++.+|.|+......  .
T Consensus       227 ~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF-~~~~~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~  305 (477)
T d1ho8a_         227 TRIVATNSNHLGIQLQYHSLLLIWLLTF-NPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHK  305 (477)
T ss_dssp             ---------CCHHHHHHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHH
T ss_pred             chhhcccCCCccHHHHHHHHHHHHHHHc-CHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhh
Confidence                      123557788889998875 45555555554  45888888886 56788999999999999865332  1


Q ss_pred             ----hhHHhhCChHHHHHhhcC---CChhHHHHHHHH-------HHHcccCCchhhHHHhhCCcccccccccccccchHH
Q 005282          354 ----AGIAQDGGILPLLKLLDS---KNGSLQHNAAFA-------LYGLADNEDNVADLVRVGGVQKLQDGEFTVQPTKDC  419 (704)
Q Consensus       354 ----~~~~~~~~~~~L~~ll~~---~~~~v~~~a~~~-------L~~l~~~~~~~~~l~~~g~i~~l~~~~~~~~~~~~~  419 (704)
                          ..++..+++ ++++.|..   +|+++....-..       +..+++.++...++-. |-+.--    +.+...   
T Consensus       306 ~~~~~~~v~~~~l-~~l~~L~~r~~~Dedl~edl~~L~~~L~~~~k~lTsfd~Y~~Ev~S-g~L~WS----P~H~se---  376 (477)
T d1ho8a_         306 KVIKQLLLLGNAL-PTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDS-KLLCWS----PPHVDN---  376 (477)
T ss_dssp             HHHHHHHHHHCHH-HHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHH-TCCCCC----GGGGCH---
T ss_pred             hHHHHHHHHcchh-HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhc-CCCCCC----CCcCCh---
Confidence                223444444 55555543   466654433322       2333333344444332 333220    000000   


Q ss_pred             HHHHHHHHHHHh---hcchhHHHHHHHh----------hccHHHHHHHHHHHHhccC-CCccceeeecCCcHHHHHHHHh
Q 005282          420 VARTLKRLEEKV---HGRVLNHLLYLLR----------VADRAVKRRVTLALAHLCA-PDDCKTIFIDNNGLELLLGLLE  485 (704)
Q Consensus       420 ~~~~~~~~~~~~---~~~~~~~L~~ll~----------~~~~~v~~~a~~~L~~l~~-~~~~~~~l~~~~~i~~L~~ll~  485 (704)
                        ....+...++   ...++..|+.++.          +.++.+..-||.=|+.+++ .|..+..+.+.||-..+.+++.
T Consensus       377 --~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr~il~~lg~K~~vM~Lm~  454 (477)
T d1ho8a_         377 --GFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLN  454 (477)
T ss_dssp             --HHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTS
T ss_pred             --hHHHHHHHhhcccchHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcchhHHHHHcCcHHHHHHHhc
Confidence              1111222222   3457888999986          4578888899999999987 6778888778899999999999


Q ss_pred             hcchhhhhhHHHHHHHHhhhc
Q 005282          486 STSVKQREESSVALYKLATKA  506 (704)
Q Consensus       486 ~~~~~~~~~a~~~L~~L~~~~  506 (704)
                      +++++||..|..++..+..+.
T Consensus       455 h~d~~Vr~eAL~avQklm~~n  475 (477)
T d1ho8a_         455 HSDSRVKYEALKATQAIIGYT  475 (477)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHS
T ss_pred             CCCHHHHHHHHHHHHHHHHhc
Confidence            999999999999999887654

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=7.8e-08  Score=112.86  Aligned_cols=385  Identities=11%  Similarity=0.052  Sum_probs=219.1

Q ss_pred             hHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhh-HHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHH
Q 005282           94 VPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEH-QQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAA  172 (704)
Q Consensus        94 i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~-~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~  172 (704)
                      |..|++-+.++          |+++|..|+.-|.+....+.. .+.-....+++.++++|.+.+.        +++..|+
T Consensus         5 ~~~ll~k~~~~----------D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~--------~Vq~~A~   66 (1207)
T d1u6gc_           5 ISNLLEKMTSS----------DKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNG--------EVQNLAV   66 (1207)
T ss_dssp             HHHHHHHTTCS----------SHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSH--------HHHHHHH
T ss_pred             HHHHHHhcCCC----------CHhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhCCCCH--------HHHHHHH
Confidence            34556666665          459999998877776521111 0000112256889999987665        9999999


Q ss_pred             HHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhh-----HHhHhcCChHHHHHhhc-C
Q 005282          173 DAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENK-----KLIVECNALPTLVLMLR-S  246 (704)
Q Consensus       173 ~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~-----~~~~~~~~i~~L~~lL~-~  246 (704)
                      .+|+.++...++.    .....++.|+..+.+++...+..+..+|..+...-+...     ........++.+...+. .
T Consensus        67 k~l~~l~~~~~~~----~~~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~  142 (1207)
T d1u6gc_          67 KCLGPLVSKVKEY----QVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQ  142 (1207)
T ss_dssp             HHHHHHHTTSCHH----HHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHhCcHh----hHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCC
Confidence            9999998543322    113456778887888888889888888887753211110     00111112344444443 4


Q ss_pred             CCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHH
Q 005282          247 EDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIE  326 (704)
Q Consensus       247 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~  326 (704)
                      .++.++..++.++..+....+...... ...+++.++..+.++++.++..|+.+|+.++...+...    -...++.++.
T Consensus       143 ~~~~v~~~al~~l~~l~~~~g~~l~~~-~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~~----~~~~~~~ll~  217 (1207)
T d1u6gc_         143 EDVSVQLEALDIMADMLSRQGGLLVNF-HPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIV----FVDLIEHLLS  217 (1207)
T ss_dssp             SCHHHHHHHHHHHHHHHHHTCSSCTTT-HHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHhhHhhHHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHHH----HHHHHHHHHH
Confidence            578899999999998875432211100 12356677778889999999999999999976433221    1235666666


Q ss_pred             hhC-CCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHHHccc-CCchhhHHHhhCCcc
Q 005282          327 MLQ-SPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALYGLAD-NEDNVADLVRVGGVQ  404 (704)
Q Consensus       327 ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~l~~~g~i~  404 (704)
                      .+. +.+...+..++.+++.++.....+..-.-...++.+++.+.+.+.+++..+..++..++. .++....... ..+.
T Consensus       218 ~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~ii~  296 (1207)
T d1u6gc_         218 ELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVS-TIIN  296 (1207)
T ss_dssp             HHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHH-HHHH
T ss_pred             HHccCCCHHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhChhhhhhhHH-HHHH
Confidence            554 445556667778888887644332211123456778889999999999999999998874 3322211111 1111


Q ss_pred             ccccccccc-----ccchHHHHHHHHHHHHHhhcchhHHHHHHHhhccHHHHHHHHHHHHhccCCCccceeeecCCcHHH
Q 005282          405 KLQDGEFTV-----QPTKDCVARTLKRLEEKVHGRVLNHLLYLLRVADRAVKRRVTLALAHLCAPDDCKTIFIDNNGLEL  479 (704)
Q Consensus       405 ~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~~~~~i~~  479 (704)
                      .+.+.....     .............. ........+....-.....+.++..++.+|..+.........-.-...++.
T Consensus       297 ~~l~~l~~dp~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~~l~~~~~~~~~~  375 (1207)
T d1u6gc_         297 ICLKYLTYDPNYNYDDEDEDENAMDADG-GDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPA  375 (1207)
T ss_dssp             HHTTCCCCC-------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHH
T ss_pred             HHHHHHhcCcchhhhhHHHHHhhhhhhc-cchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            111110000     00000000000000 000011112222223445678899999999998543322211112357888


Q ss_pred             HHHHHhhcchhhhhhHHHHHHHHhhhcC
Q 005282          480 LLGLLESTSVKQREESSVALYKLATKAT  507 (704)
Q Consensus       480 L~~ll~~~~~~~~~~a~~~L~~L~~~~~  507 (704)
                      |+..+.+.++.++..+..++..+.....
T Consensus       376 L~~~l~d~~~~vr~~~~~~l~~l~~~~~  403 (1207)
T d1u6gc_         376 LISRFKEREENVKADVFHAYLSLLKQTR  403 (1207)
T ss_dssp             HHSTTSCSSSHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHhcCCchHHHHHHHHHHHHHHHhcc
Confidence            8888888899999999999998877654

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.30  E-value=2.3e-05  Score=77.17  Aligned_cols=261  Identities=15%  Similarity=0.179  Sum_probs=165.0

Q ss_pred             HHHHHHHHHHHhhc-CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcChhhhhhhhc--cC
Q 005282          117 EVEKECAFALGLLA-VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHENANIKTRVRV--ED  193 (704)
Q Consensus       117 ~v~~~a~~~L~~l~-~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~~  193 (704)
                      -+...+..++..++ .++......-...-...+...+....+       .+....|+.++..+.. .++.|..+..  ..
T Consensus       137 ~~~~~s~~i~~ll~~~~~~~~~~~e~l~~~~~~l~~l~~~~~-------~~~~~i~v~~lq~llr-~~~~R~~fw~~~~~  208 (477)
T d1ho8a_         137 TVLISGFNVVSLLVQNGLHNVKLVEKLLKNNNLINILQNIEQ-------MDTCYVCIRLLQELAV-IPEYRDVIWLHEKK  208 (477)
T ss_dssp             HHHHHHHHHHHHHTSTTTCCHHHHHHHHHCHHHHHHHHCTTC-------HHHHHHHHHHHHHHHT-SHHHHHHHHTTHHH
T ss_pred             HHHHHHHHHHHHHHhccccccchHHHHHHhhHHHHHhhcccc-------cchHHHHHHHHHHHhc-CccHHHHHHHcccc
Confidence            67777778888887 333322211111111223333322222       2677778888888875 5667776644  34


Q ss_pred             CcHHHHHHhcC-----------------CCHHHHHHHHHHHHHhccCCchhhHHhHhc--CChHHHHHhhc-CCCHHHHH
Q 005282          194 GIPPLVELLKF-----------------VDVKVQRAAAGALRTLAFKNDENKKLIVEC--NALPTLVLMLR-SEDASVHF  253 (704)
Q Consensus       194 ~i~~L~~ll~~-----------------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~--~~i~~L~~lL~-~~~~~v~~  253 (704)
                      .++.++..++.                 .+..++..++-++|.|+. +++....+.+.  +.++.++++++ +..+.+.+
T Consensus       209 ~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF-~~~~~~~l~~~~~~~i~~l~~i~~~s~KEKvvR  287 (477)
T d1ho8a_         209 FMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTF-NPVFANELVQKYLSDFLDLLKLVKITIKEKVSR  287 (477)
T ss_dssp             HHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHH
T ss_pred             hHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHHHc-CHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHH
Confidence            46777776652                 125789999999999997 67777777665  34888888886 67889999


Q ss_pred             HHHHHHHHHhcCChh-----hHHHHHHcCCHHHHHHHhcCC---ChhHHHHHHHHHHHHhc-------------------
Q 005282          254 EAVGVIGNLVHSSPS-----IKKEVILAGALQPVIGLLSSS---CSESKREAALLLGQFAA-------------------  306 (704)
Q Consensus       254 ~a~~~L~~l~~~~~~-----~~~~~~~~~~l~~L~~ll~~~---~~~~~~~a~~~L~~l~~-------------------  306 (704)
                      .++.++.|+......     ....++..++++. +..|...   |+++... +..|.....                   
T Consensus       288 v~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l~~-l~~L~~r~~~Dedl~ed-l~~L~~~L~~~~k~lTsfd~Y~~Ev~Sg  365 (477)
T d1ho8a_         288 LCISIILQCCSTRVKQHKKVIKQLLLLGNALPT-VQSLSERKYSDEELRQD-ISNLKEILENEYQELTSFDEYVAELDSK  365 (477)
T ss_dssp             HHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHH-HHHHHSSCCSSHHHHHH-HHHHHHHHHHHHHTCCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhhhhhhhhhhHHHHHHHHcchhHH-HHHHhcCCCCCHHHHHH-HHHHHHHHHHHHHhcCcHHHHHHHHhcC
Confidence            999999999864321     2233444555554 4555432   4444322 222211110                   


Q ss_pred             ---cCCcch---------HHHHh--cCChHHHHHhhC----------CCCHHHHHHHHHHHHHhhcC-CchhhhHHhhCC
Q 005282          307 ---ADSNSK---------VHIVQ--RGAVRPLIEMLQ----------SPDSQLKEMSAFALGRLAQD-THNQAGIAQDGG  361 (704)
Q Consensus       307 ---~~~~~~---------~~~~~--~~~i~~L~~ll~----------~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~  361 (704)
                         -++..+         ..+-+  ..++..|+++|+          +.|+.+...||.=++.++.+ +.++..+-+.|+
T Consensus       366 ~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr~il~~lg~  445 (477)
T d1ho8a_         366 LLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGG  445 (477)
T ss_dssp             CCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSH
T ss_pred             CCCCCCCcCChhHHHHHHHhhcccchHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcchhHHHHHcCc
Confidence               011111         01111  245788999985          34678888999999999976 455555556688


Q ss_pred             hHHHHHhhcCCChhHHHHHHHHHHHcc
Q 005282          362 ILPLLKLLDSKNGSLQHNAAFALYGLA  388 (704)
Q Consensus       362 ~~~L~~ll~~~~~~v~~~a~~~L~~l~  388 (704)
                      =..+++++.+.|++|+.+|+.++..+.
T Consensus       446 K~~vM~Lm~h~d~~Vr~eAL~avQklm  472 (477)
T d1ho8a_         446 KADIMELLNHSDSRVKYEALKATQAII  472 (477)
T ss_dssp             HHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            788999999999999999999998764

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.06  E-value=1.9e-07  Score=75.17  Aligned_cols=109  Identities=21%  Similarity=0.285  Sum_probs=88.0

Q ss_pred             hcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHH
Q 005282          244 LRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRP  323 (704)
Q Consensus       244 L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~  323 (704)
                      |.++++.||..|+++|+.+.            ...++.|+..+.++++.++..++++|+++..           .+.++.
T Consensus         1 L~D~~~~VR~~A~~aL~~~~------------~~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~-----------~~~~~~   57 (111)
T d1te4a_           1 MADENKWVRRDVSTALSRMG------------DEAFEPLLESLSNEDWRIRGAAAWIIGNFQD-----------ERAVEP   57 (111)
T ss_dssp             CCSSCCCSSSSCCSSTTSCS------------STTHHHHHHGGGCSCHHHHHHHHHHHGGGCS-----------HHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHHhC------------HHHHHHHHHHHcCCCHHHHHHHHHHHHhcch-----------hhhHHH
Confidence            35677788888888887652            1357788999999999999999999987632           235789


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHHHHH
Q 005282          324 LIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAFALY  385 (704)
Q Consensus       324 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~L~  385 (704)
                      |..++.++++.++..|+++|+.+..          .+.++.|..++++.++.++..|+.+|.
T Consensus        58 L~~~l~d~~~~VR~~a~~aL~~i~~----------~~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          58 LIKLLEDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             HHHHHHHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             HHhhhccchhHHHHHHHHHHHHhCc----------cchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            9999999999999999999998742          235677888999999999999998874

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.03  E-value=2.9e-07  Score=74.06  Aligned_cols=108  Identities=21%  Similarity=0.222  Sum_probs=85.4

Q ss_pred             cCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHH
Q 005282          203 KFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPV  282 (704)
Q Consensus       203 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L  282 (704)
                      .++++.+|..|+++|..+.            ...++.|+..|.++++.+|..++++|+++..  +         +.++.|
T Consensus         2 ~D~~~~VR~~A~~aL~~~~------------~~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~--~---------~~~~~L   58 (111)
T d1te4a_           2 ADENKWVRRDVSTALSRMG------------DEAFEPLLESLSNEDWRIRGAAAWIIGNFQD--E---------RAVEPL   58 (111)
T ss_dssp             CSSCCCSSSSCCSSTTSCS------------STTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--H---------HHHHHH
T ss_pred             CCcCHHHHHHHHHHHHHhC------------HHHHHHHHHHHcCCCHHHHHHHHHHHHhcch--h---------hhHHHH
Confidence            4556666766666665543            1357889999999999999999999987742  1         247889


Q ss_pred             HHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHH
Q 005282          283 IGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALG  344 (704)
Q Consensus       283 ~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~  344 (704)
                      ..++.++++.++..++.+|+.+..           .+.++.|..++.++++.++..|+.+|.
T Consensus        59 ~~~l~d~~~~VR~~a~~aL~~i~~-----------~~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          59 IKLLEDDSGFVRSGAARSLEQIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             HHHHHHCCTHHHHHHHHHHHHHCS-----------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             HhhhccchhHHHHHHHHHHHHhCc-----------cchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            999999999999999999998732           235788889999999999999988874

>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Elongin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=1.5e-05  Score=60.91  Aligned_cols=79  Identities=22%  Similarity=0.371  Sum_probs=57.0

Q ss_pred             EEEE-cCeEeehhHHHHhhcCHHHHHhhcC--CCCCCCCCceEcCCCCHHHHHHHHHHHhc-----C------ccccChh
Q 005282          539 TFVV-EGKQFYAHRICLLASSDAFRAMFDG--GYKEKNAKDVEIPNIRWNVFELMMRFIYT-----G------NVDVSVD  604 (704)
Q Consensus       539 ~~~~-~~~~~~~hk~iL~~~s~~f~~~f~~--~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~-----~------~~~~~~~  604 (704)
                      +++. +|..|.+.+.+ +..|+.++.|+.+  .+.++....|++++++...++.+++|++.     +      ...++.+
T Consensus         4 ~L~SsDg~~f~V~~~~-A~~S~tI~~ml~~~~~~~e~~~~~IpL~nV~s~iL~kViey~~~h~~~~~~~~~~~~fdi~~~   82 (96)
T d2c9wc1           4 KLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPE   82 (96)
T ss_dssp             EEECTTCCEEEEEHHH-HTTSHHHHHC------------CEEECTTCCHHHHHHHHHHHHHHHHTC----CCCCCCCCHH
T ss_pred             EEEcCCCCEEEeeHHH-HHHhHHHHHHHhccCccccCCCCeeECCCCCHHHHHHHHHHHHhhccCcCCcCCCCCCcCCHH
Confidence            3444 78899999998 6699999999965  34566677999999999999999999952     1      1236778


Q ss_pred             hHHHHHHHHhhhCh
Q 005282          605 IAQDLLRAADQYLL  618 (704)
Q Consensus       605 ~~~~ll~~A~~~~~  618 (704)
                      .+++|+.+|+|+++
T Consensus        83 ~l~eLi~AAnyLd~   96 (96)
T d2c9wc1          83 IALELLMAANFLDC   96 (96)
T ss_dssp             HHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHhhhcC
Confidence            89999999999863

>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Elongin C
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.88  E-value=3.9e-05  Score=58.94  Aligned_cols=79  Identities=22%  Similarity=0.432  Sum_probs=63.8

Q ss_pred             EEEEE-cCeEeehhHHHHhhcCHHHHHhhcCCCCCCCCCceEcCCCCHHHHHHHHHHHhcC--------------ccccC
Q 005282          538 VTFVV-EGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFIYTG--------------NVDVS  602 (704)
Q Consensus       538 ~~~~~-~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~--------------~~~~~  602 (704)
                      |+++. +|..|.+.+.+ +..|..++.|+.+.+.+++ ..|++++++...+..+++|++..              ...++
T Consensus         6 v~L~SsDg~~f~V~~~~-A~~S~tI~~ml~~~~~e~~-~~Ipl~~V~s~iL~kViey~~~h~~~~~~~~~~~~~~efdvd   83 (99)
T d1hv2a_           6 VTLVSKDDKEYEISRSA-AMISPTLKAMIEGPFRESK-GRIELKQFDSHILEKAVEYLNYNLKYSGVSEDDDEIPEFEIP   83 (99)
T ss_dssp             EEEEETTTEEEEEEHHH-HTTCHHHHHHHHSSTTTCT-TEEEETTSCHHHHHHHHHHHHHHHHHHHHCSSCSSCCCCCCC
T ss_pred             EEEEcCCCCEEEeeHHH-HHHhHHHHHHHHccCCCCc-CccccCCCChHHHHHHHHHHHHhhhCcCcccccccCCCCCCC
Confidence            55555 78899999998 5589999999998766653 57999999999999999999641              12346


Q ss_pred             hhhHHHHHHHHhhhCh
Q 005282          603 VDIAQDLLRAADQYLL  618 (704)
Q Consensus       603 ~~~~~~ll~~A~~~~~  618 (704)
                      .+.+++|+.+|+|+++
T Consensus        84 ~~~l~eLi~AAnyLdI   99 (99)
T d1hv2a_          84 TEMSLELLLAADYLSI   99 (99)
T ss_dssp             HHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHhhhCC
Confidence            6779999999999874

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.01  E-value=0.013  Score=53.69  Aligned_cols=207  Identities=14%  Similarity=0.170  Sum_probs=157.1

Q ss_pred             hhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhh----HHhHh-cCChHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 005282          189 VRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENK----KLIVE-CNALPTLVLMLRSEDASVHFEAVGVIGNLV  263 (704)
Q Consensus       189 ~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~----~~~~~-~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~  263 (704)
                      +...+.+..|+..|..=+-+.++.+..+..++.......+    +.+.. ..++..|+..-  +++++-..+...|..+.
T Consensus        65 ~~~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gy--e~~eiAl~~G~mLREci  142 (330)
T d1upka_          65 LYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGY--ESPEIALNCGIMLRECI  142 (330)
T ss_dssp             HHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGG--GSTTTHHHHHHHHHHHH
T ss_pred             HHHhChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhc--CCcchhhhhhHHHHHHH
Confidence            3445677888888888899999999999999976444333    33332 22344444433  45666677777777777


Q ss_pred             cCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhc---CChHHHHHhhCCCCHHHHHHHH
Q 005282          264 HSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQR---GAVRPLIEMLQSPDSQLKEMSA  340 (704)
Q Consensus       264 ~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~---~~i~~L~~ll~~~~~~v~~~a~  340 (704)
                      .. +.....+.....+..+..++..++-++...|..++..+...++.....++..   ..+.....++.+++.-++..+.
T Consensus       143 k~-e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRqSl  221 (330)
T d1upka_         143 RH-EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSL  221 (330)
T ss_dssp             TS-HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred             hh-HHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHHHH
Confidence            65 6777778888888899999999999999999999998877666555555544   3567778889999999999999


Q ss_pred             HHHHHhhcCCchhhhHHh----hCChHHHHHhhcCCChhHHHHHHHHHHHcccCCchhhHHH
Q 005282          341 FALGRLAQDTHNQAGIAQ----DGGILPLLKLLDSKNGSLQHNAAFALYGLADNEDNVADLV  398 (704)
Q Consensus       341 ~~L~~l~~~~~~~~~~~~----~~~~~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~l~  398 (704)
                      ..|+.+.....+...+..    ..-+..++.+|++.+..+|-.|..+..-+..+|..-+.+.
T Consensus       222 KLLgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVANpnKp~~I~  283 (330)
T d1upka_         222 KLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPIL  283 (330)
T ss_dssp             HHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHH
T ss_pred             HHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcCCCCCHHHH
Confidence            999999988877765432    3457778999999999999999999999998777555444

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.95  E-value=0.00019  Score=64.78  Aligned_cols=175  Identities=20%  Similarity=0.182  Sum_probs=111.8

Q ss_pred             hHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhcCChhhHHHHHHcCCcHHHHHHHhhccCCCCCc
Q 005282           83 EIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLAVKPEHQQIIVDTGALPHLVSLLKQYKNGGNSR  162 (704)
Q Consensus        83 ~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~  162 (704)
                      +.+......-.+..|..+++++++          +||..|+..|.                 ...|..++.+.+.     
T Consensus        57 e~Ra~Aa~~a~~~~L~~Ll~D~d~----------~VR~~AA~~Lp-----------------~~~L~~L~~D~d~-----  104 (233)
T d1lrva_          57 ERRAIAVRYSPVEALTPLIRDSDE----------VVRRAVAYRLP-----------------REQLSALMFDEDR-----  104 (233)
T ss_dssp             HHHHHHHTTSCGGGGGGGTTCSSH----------HHHHHHHTTSC-----------------SGGGGGTTTCSCH-----
T ss_pred             HHHHHHHhcCCHHHHHHHhcCCCH----------HHHHHHHHHcC-----------------HHHHHHHhcCCCh-----
Confidence            333333344567888888888865          89988876431                 2345555555443     


Q ss_pred             chhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHH
Q 005282          163 ALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVL  242 (704)
Q Consensus       163 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~  242 (704)
                         .++..++..+   .               .+.|..++.++++.++..+...   +.               .+.|..
T Consensus       105 ---~VR~~aa~~l---~---------------~~~L~~Ll~D~d~~VR~~aa~~---~~---------------~~~L~~  145 (233)
T d1lrva_         105 ---EVRITVADRL---P---------------LEQLEQMAADRDYLVRAYVVQR---IP---------------PGRLFR  145 (233)
T ss_dssp             ---HHHHHHHHHS---C---------------TGGGGGGTTCSSHHHHHHHHHH---SC---------------GGGGGG
T ss_pred             ---hHHHHHHhcc---C---------------HHHHHHHhcCCCHHHHHHHHhc---cc---------------hhHHHH
Confidence               7776665432   1               3456677888888888877653   11               234556


Q ss_pred             hhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChH
Q 005282          243 MLRSEDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVR  322 (704)
Q Consensus       243 lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~  322 (704)
                      +++++++.|+..++..+                  ..+.|..++.++++.++..++..+.                  .+
T Consensus       146 L~~D~d~~VR~~aA~~~------------------~~~~L~~l~~D~d~~VR~~aa~~L~------------------~~  189 (233)
T d1lrva_         146 FMRDEDRQVRKLVAKRL------------------PEESLGLMTQDPEPEVRRIVASRLR------------------GD  189 (233)
T ss_dssp             TTTCSCHHHHHHHHHHS------------------CGGGGGGSTTCSSHHHHHHHHHHCC------------------GG
T ss_pred             HhcCCCHHHHHHHHHhc------------------CHHHHHHHccCCCHHHHHHHHHhcC------------------cH
Confidence            77788888888766421                  1345666777888888877765431                  24


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhhcCCChhHHHHHHH
Q 005282          323 PLIEMLQSPDSQLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLLDSKNGSLQHNAAF  382 (704)
Q Consensus       323 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~  382 (704)
                      .|..++.+++..|+..++..+                  .+.++..|.+.++.|+..++.
T Consensus       190 ~L~~l~~D~d~~VR~aaae~~------------------~~~ll~~L~D~d~~VR~aA~~  231 (233)
T d1lrva_         190 DLLELLHDPDWTVRLAAVEHA------------------SLEALRELDEPDPEVRLAIAG  231 (233)
T ss_dssp             GGGGGGGCSSHHHHHHHHHHS------------------CHHHHHHCCCCCHHHHHHHHC
T ss_pred             HHHHHHhCCCHHHHHHHHHhc------------------cHHHHHHhCCCCHHHHHHHHH
Confidence            566777888888887765321                  134667778888888887764

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.84  E-value=0.17  Score=46.13  Aligned_cols=200  Identities=15%  Similarity=0.164  Sum_probs=147.3

Q ss_pred             HHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc-CChhhH----HHHHHcCCcHHHHHHHhhccCCCC
Q 005282           86 SLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA-VKPEHQ----QIIVDTGALPHLVSLLKQYKNGGN  160 (704)
Q Consensus        86 ~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~-~~~~~~----~~~~~~g~l~~L~~lL~~~~~~~~  160 (704)
                      ..+...+.+..|+..|..=+-          +.|..+..+.+++. ...+.+    +.+..  --..+..+++....   
T Consensus        63 ~e~~~~d~l~~Li~~L~~L~f----------E~RKD~~~if~~llR~~~~~~~p~v~Yl~~--~~eil~~L~~gye~---  127 (330)
T d1upka_          63 QELYNSGLLSTLVADLQLIDF----------EGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYES---  127 (330)
T ss_dssp             HHHHHHSHHHHHHHTGGGSCH----------HHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGS---
T ss_pred             HHHHHhChHHHHHHhCCCCCC----------chhhhHHHHHHHHhhcCCCCCCccHHHHHc--CHHHHHHHHhhcCC---
Confidence            445567888999998888754          89999999999998 333333    33442  22444445554443   


Q ss_pred             CcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcC---Ch
Q 005282          161 SRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECN---AL  237 (704)
Q Consensus       161 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~---~i  237 (704)
                          +++...+...|..... .+.....+.....+..+.++.+.++=++..-|..++..+....+.....+...+   ++
T Consensus       128 ----~eiAl~~G~mLREcik-~e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff  202 (330)
T d1upka_         128 ----PEIALNCGIMLRECIR-HEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFF  202 (330)
T ss_dssp             ----TTTHHHHHHHHHHHHT-SHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHH
T ss_pred             ----cchhhhhhHHHHHHHh-hHHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHH
Confidence                2555566666666654 677777788888899999999999999999999999998765665555555444   46


Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHH----HcCCHHHHHHHhcCCChhHHHHHHHHHHHHhc
Q 005282          238 PTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKEVI----LAGALQPVIGLLSSSCSESKREAALLLGQFAA  306 (704)
Q Consensus       238 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~----~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~  306 (704)
                      ....++|.+++--+++.++..|+.+..+ ..+...+.    +..-+..++.+|++.+..++-+|..++--+..
T Consensus       203 ~~~~~LL~s~NYVtrRqSlKLLgelLld-r~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVA  274 (330)
T d1upka_         203 SEYEKLLHSENYVTKRQSLKLLGELLLD-RHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVA  274 (330)
T ss_dssp             HHHHHHTTCSSHHHHHHHHHHHHHHHHS-GGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCchHHHHHHHHHHHHHHhh-hhHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhc
Confidence            6677899999999999999999999865 33333222    34568899999999999999999988877765

>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: Tetramerization domain of potassium channels
domain: Potassium channel kv4.2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.78  E-value=0.0004  Score=53.55  Aligned_cols=92  Identities=11%  Similarity=0.111  Sum_probs=68.0

Q ss_pred             EEEEEcCeEeehhHHHHhhcC-HHHHHhhcCCCCCCCCCceEcCCCCHHHHHHHHHHHhcCccccChh-hHHHHHHHHhh
Q 005282          538 VTFVVEGKQFYAHRICLLASS-DAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFIYTGNVDVSVD-IAQDLLRAADQ  615 (704)
Q Consensus       538 ~~~~~~~~~~~~hk~iL~~~s-~~f~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~-~~~~ll~~A~~  615 (704)
                      |++-|||+.|...+..|.... .+|..++...+.....+.+-+ |=++..|+.+|.|+.+|.+.++++ ....++.=|++
T Consensus         2 I~LNVGG~~f~t~~~TL~~~p~s~l~~~~~~~~~~~~~~~~Fi-DRdp~~F~~IL~ylR~G~l~~p~~~~~~~l~~Ea~f   80 (105)
T d1nn7a_           2 IVLNVSGTRFQTWQDTLERYPDTLLGSSERDFFYHPETQQYFF-DRDPDIFRHILNFYRTGKLHYPRHECISAYDEELAF   80 (105)
T ss_dssp             EEEEETTEEEEECHHHHHTSCSSSTTSGGGGGGEEGGGTEEEE-CSCTTTHHHHHHHHHHSCBCCCTTSCHHHHHHHHHH
T ss_pred             EEEEECCEEEEEeHHHHhcCCCCCccccccccCcCCCCCcEEE-eCCHHHHHHHHHHHhcCccccCCCccHHHHHHHHHH
Confidence            678899999999999998653 345555555544444556555 458899999999999999876554 46788888999


Q ss_pred             hChHh--HHHHHHHHHH
Q 005282          616 YLLEG--LKRLCEYSIA  630 (704)
Q Consensus       616 ~~~~~--l~~~c~~~l~  630 (704)
                      |+++.  +...|.+.+.
T Consensus        81 ygi~~~~l~~cc~~~~~   97 (105)
T d1nn7a_          81 FGLIPEIIGDCCYEEYK   97 (105)
T ss_dssp             HTCCSCCBCHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHH
Confidence            99976  3355665553

>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: Tetramerization domain of potassium channels
domain: akv3.1 voltage-gated potassium channel
species: California sea hare (Aplysia californica) [TaxId: 6500]

Probab=96.61  E-value=0.00085  Score=51.47  Aligned_cols=87  Identities=13%  Similarity=0.167  Sum_probs=64.9

Q ss_pred             EEEEEcCeEeehhHHHHhhc-CHHHHHhhcCCCCC-CCCCceEcCCCCHHHHHHHHHHHhcCccccChh-hHHHHHHHHh
Q 005282          538 VTFVVEGKQFYAHRICLLAS-SDAFRAMFDGGYKE-KNAKDVEIPNIRWNVFELMMRFIYTGNVDVSVD-IAQDLLRAAD  614 (704)
Q Consensus       538 ~~~~~~~~~~~~hk~iL~~~-s~~f~~~f~~~~~e-~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~-~~~~ll~~A~  614 (704)
                      |.+-|||+.|...+..|... ..+|..++++.+.. ...+.+-+ |=+++.|+.+|.|+-+|.+.++.+ ....++.=|+
T Consensus         4 I~LNVGG~~F~t~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~fi-DRdp~~F~~IL~ylR~g~l~~p~~~~~~~l~~Ea~   82 (103)
T d3kvta_           4 VIINVGGIRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFF-DRHPGVFAQIINYYRSGKLHYPTDVCGPLFEEELE   82 (103)
T ss_dssp             EEEEETTEEEEEEHHHHTTSCSSTTTTCCTTSTTEETTTTEEEE-CSCTTTHHHHHHHHHHSCBCCCSSSCHHHHHHHHH
T ss_pred             EEEEECCEEEEEeHHHHhhCccchhHHHHcCCCccCCCCCcEEe-cCCHHHHHHHHHHHccCCcccccccCHHHHHHHHH
Confidence            67889999999999999865 34666666654432 23345555 678999999999999999887654 4677888899


Q ss_pred             hhChHh-HHHHH
Q 005282          615 QYLLEG-LKRLC  625 (704)
Q Consensus       615 ~~~~~~-l~~~c  625 (704)
                      +|+++. +.+.|
T Consensus        83 yygi~~~~l~~C   94 (103)
T d3kvta_          83 FWGLDSNQVEPC   94 (103)
T ss_dssp             HHTCCGGGBCGG
T ss_pred             HcCCCHHHHHHH
Confidence            999964 44444

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.51  E-value=0.00091  Score=60.11  Aligned_cols=120  Identities=17%  Similarity=0.144  Sum_probs=76.6

Q ss_pred             CCcHHHHHHhcCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHH
Q 005282          193 DGIPPLVELLKFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIKKE  272 (704)
Q Consensus       193 ~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~  272 (704)
                      -.+..|..+++++++.|+..++..|   .               .+.+..++++++..|+..++..+   .         
T Consensus        66 a~~~~L~~Ll~D~d~~VR~~AA~~L---p---------------~~~L~~L~~D~d~~VR~~aa~~l---~---------  115 (233)
T d1lrva_          66 SPVEALTPLIRDSDEVVRRAVAYRL---P---------------REQLSALMFDEDREVRITVADRL---P---------  115 (233)
T ss_dssp             SCGGGGGGGTTCSSHHHHHHHHTTS---C---------------SGGGGGTTTCSCHHHHHHHHHHS---C---------
T ss_pred             CCHHHHHHHhcCCCHHHHHHHHHHc---C---------------HHHHHHHhcCCChhHHHHHHhcc---C---------
Confidence            3466788889999999998887532   1               24466777788888888776542   1         


Q ss_pred             HHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCch
Q 005282          273 VILAGALQPVIGLLSSSCSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQSPDSQLKEMSAFALGRLAQDTHN  352 (704)
Q Consensus       273 ~~~~~~l~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~  352 (704)
                            .+.|..++.++++.++..++..   +               ..+.|..+++++++.++..++..+         
T Consensus       116 ------~~~L~~Ll~D~d~~VR~~aa~~---~---------------~~~~L~~L~~D~d~~VR~~aA~~~---------  162 (233)
T d1lrva_         116 ------LEQLEQMAADRDYLVRAYVVQR---I---------------PPGRLFRFMRDEDRQVRKLVAKRL---------  162 (233)
T ss_dssp             ------TGGGGGGTTCSSHHHHHHHHHH---S---------------CGGGGGGTTTCSCHHHHHHHHHHS---------
T ss_pred             ------HHHHHHHhcCCCHHHHHHHHhc---c---------------chhHHHHHhcCCCHHHHHHHHHhc---------
Confidence                  2345566778888887766542   1               123445566677777777655421         


Q ss_pred             hhhHHhhCChHHHHHhhcCCChhHHHHHHHH
Q 005282          353 QAGIAQDGGILPLLKLLDSKNGSLQHNAAFA  383 (704)
Q Consensus       353 ~~~~~~~~~~~~L~~ll~~~~~~v~~~a~~~  383 (704)
                              +.+.+..++++.++.|+..++..
T Consensus       163 --------~~~~L~~l~~D~d~~VR~~aa~~  185 (233)
T d1lrva_         163 --------PEESLGLMTQDPEPEVRRIVASR  185 (233)
T ss_dssp             --------CGGGGGGSTTCSSHHHHHHHHHH
T ss_pred             --------CHHHHHHHccCCCHHHHHHHHHh
Confidence                    12445566667777777766654

>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: Tetramerization domain of potassium channels
domain: Shaker potassium channel
species: California sea hare (Aplysia californica) [TaxId: 6500]

Probab=96.24  E-value=0.0028  Score=48.09  Aligned_cols=83  Identities=13%  Similarity=0.095  Sum_probs=62.6

Q ss_pred             EEEEEcCeEeehhHHHHhhc-CHHHHHhhcCCCC-CCCCCceEcCCCCHHHHHHHHHHHhcC-ccccChh-hHHHHHHHH
Q 005282          538 VTFVVEGKQFYAHRICLLAS-SDAFRAMFDGGYK-EKNAKDVEIPNIRWNVFELMMRFIYTG-NVDVSVD-IAQDLLRAA  613 (704)
Q Consensus       538 ~~~~~~~~~~~~hk~iL~~~-s~~f~~~f~~~~~-e~~~~~i~l~~~~~~~~~~~l~~~Y~~-~~~~~~~-~~~~ll~~A  613 (704)
                      |.+-|||+.|.+.+..|... +.+|..++...+. ......+-+ |=+++.|+.+|.|+-+| .+..+.+ ....+++-|
T Consensus         3 I~LNVGG~~f~t~~~tL~~~p~s~l~~l~~~~~~~~~~~g~~Fi-DRdp~~F~~IL~flR~~~~l~~~~~~~~~~l~~Ea   81 (100)
T d1t1da_           3 VVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFF-DRNRPSFDAILYFYQSGGRLRRPVNVPLDVFSEEI   81 (100)
T ss_dssp             EEEEETTEEEEEEHHHHHTSTTSTTTCHHHHGGGEETTTTEEEE-CSCSTTHHHHHHHHHTTSCCCCCTTSCHHHHHHHH
T ss_pred             EEEEECCEEEEEeHHHHhhCCCchhHHHHhCCCcCCCCCCeEEE-ecCHHHHHHHHHHHhcCCCcCCCCcccHHHHHHHH
Confidence            77889999999999999875 5677777764432 334456666 45889999999999874 5554433 467888999


Q ss_pred             hhhChHhH
Q 005282          614 DQYLLEGL  621 (704)
Q Consensus       614 ~~~~~~~l  621 (704)
                      ++|+++..
T Consensus        82 ~y~gi~~~   89 (100)
T d1t1da_          82 KFYELGEN   89 (100)
T ss_dssp             HHTTCCHH
T ss_pred             HHcCCCHH
Confidence            99999863

>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.64  E-value=0.014  Score=40.95  Aligned_cols=60  Identities=17%  Similarity=0.292  Sum_probs=43.5

Q ss_pred             cEEEEE-cCeEeehhHHHHhhcCHHHHHhhcCCC----CCCCCCceEcCCCCHHHHHHHHHHHhcC
Q 005282          537 DVTFVV-EGKQFYAHRICLLASSDAFRAMFDGGY----KEKNAKDVEIPNIRWNVFELMMRFIYTG  597 (704)
Q Consensus       537 d~~~~~-~~~~~~~hk~iL~~~s~~f~~~f~~~~----~e~~~~~i~l~~~~~~~~~~~l~~~Y~~  597 (704)
                      .|+++. +|..|.+.+.+.. .|...+.|+....    .+.....|++++++...++.+++|++..
T Consensus         2 ~I~L~SsDg~~F~v~~~~a~-~S~tIk~ml~~~~~~~~~~~~~~~Ipl~~V~s~iL~kVieyc~~H   66 (72)
T d1nexa2           2 NVVLVSGEGERFTVDKKIAE-RSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHH   66 (72)
T ss_dssp             EEEEECTTSCEEEEEHHHHT-TSHHHHHTC-------------CEEECTTCCHHHHHHHHHHHHHT
T ss_pred             eeEEEeCCCCEEEecHHHHH-HHHHHHHHHHhcCccccccCCCCcccCCCcCHHHHHHHHHHHHHc
Confidence            456665 7889999998665 8999999997432    2233457999999999999999999653

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.57  E-value=1  Score=49.11  Aligned_cols=137  Identities=14%  Similarity=0.174  Sum_probs=92.4

Q ss_pred             HHHHHHHHhhhccCCchhhHHHHHHHHHHHHHhhcChhHHHHHHhCCChHHHHhhccCCCcCCCCCCCCchHHHHHHHHH
Q 005282           46 DIRAQIDILNSKFSSDETDRAAAKTASHALVEFAKNEEIVSLIVDNGAVPALVEHLQTPPQLTNAQIPYEHEVEKECAFA  125 (704)
Q Consensus        46 ~~~~l~~~l~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~  125 (704)
                      .+..+..+|...++.  +   .+++|-..|..+..+|+         ....|++++.+++.        +..+|..|+-.
T Consensus         3 d~~~l~~ll~~s~~~--~---~~k~Ae~~L~~~~~~p~---------f~~~L~~i~~~~~~--------~~~iR~~A~i~   60 (959)
T d1wa5c_           3 DLETVAKFLAESVIA--S---TAKTSERNLRQLETQDG---------FGLTLLHVIASTNL--------PLSTRLAGALF   60 (959)
T ss_dssp             HHHHHHHHHHHTTSG--G---GHHHHHHHHHHHHTSTT---------HHHHHHHHHHCTTS--------CHHHHHHHHHH
T ss_pred             cHHHHHHHHHHCCCh--H---HHHHHHHHHHHHHcCCC---------HHHHHHHHHhcCCC--------CHHHHHHHHHH
Confidence            355666676664432  1   35667777777766554         46778888877665        56899999988


Q ss_pred             HHhhc-CC-----------hhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHHHHHHHHHhhhcC-hhhhhhhhcc
Q 005282          126 LGLLA-VK-----------PEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRRAADAITNLAHEN-ANIKTRVRVE  192 (704)
Q Consensus       126 L~~l~-~~-----------~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~  192 (704)
                      |.|.. ..           ++.+..+.     ..++..+.+++.        .++...+.+++.++..+ |.  .+   .
T Consensus        61 lKn~i~~~W~~~~~~~~i~~e~k~~Ik-----~~ll~~l~~~~~--------~ir~~l~~~i~~I~~~d~p~--~W---p  122 (959)
T d1wa5c_          61 FKNFIKRKWVDENGNHLLPANNVELIK-----KEIVPLMISLPN--------NLQVQIGEAISSIADSDFPD--RW---P  122 (959)
T ss_dssp             HHHHHHHHSBCSSSCBSSCHHHHHHHH-----HHHHHHHHHSCH--------HHHHHHHHHHHHHHHHHSTT--TC---T
T ss_pred             HHHHHHHhcccccccCCCCHHHHHHHH-----HHHHHHHhCCcH--------HHHHHHHHHHHHHHHHhCcc--cc---H
Confidence            87776 21           12222222     345566655443        78888999999988532 22  11   4


Q ss_pred             CCcHHHHHHhcCCCHHHHHHHHHHHHHhcc
Q 005282          193 DGIPPLVELLKFVDVKVQRAAAGALRTLAF  222 (704)
Q Consensus       193 ~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~  222 (704)
                      +.++.|.+.++++++..+..++.++..++.
T Consensus       123 ~ll~~l~~~l~s~~~~~~~~~L~~l~~i~k  152 (959)
T d1wa5c_         123 TLLSDLASRLSNDDMVTNKGVLTVAHSIFK  152 (959)
T ss_dssp             THHHHHHTTCCSSCTTHHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            678889999999999999999999999874

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=95.47  E-value=0.45  Score=44.69  Aligned_cols=163  Identities=15%  Similarity=0.123  Sum_probs=105.4

Q ss_pred             cHHHHHHhcC----CCHHHHHHHHHHHHHhcc----CCchhhHHhHhcCChHHHHH----hhcCCCHHHHHHHHHHHHHH
Q 005282          195 IPPLVELLKF----VDVKVQRAAAGALRTLAF----KNDENKKLIVECNALPTLVL----MLRSEDASVHFEAVGVIGNL  262 (704)
Q Consensus       195 i~~L~~ll~~----~~~~~~~~a~~~L~~l~~----~~~~~~~~~~~~~~i~~L~~----lL~~~~~~v~~~a~~~L~~l  262 (704)
                      +..+..++.+    .++.++..+.-+++++..    ..+....     ..++.+..    .....+.+.+..++.+|+|+
T Consensus       125 l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c~~~~~~~~-----~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~  199 (336)
T d1lsha1         125 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPD-----ELLQPLHDLLSQSSDRAKEEEIVLALKALGNA  199 (336)
T ss_dssp             HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCG-----GGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHhcCCCCCcH-----HHHHHHHHHHHHhhcccchHHHHHHHHHHhcc
Confidence            4556677764    578888888888887753    1112111     22344444    44467777788899999999


Q ss_pred             hcCChhhHHHHHHcCCHHHHHHHhcCC-------ChhHHHHHHHHHHHHhccCCcchHHHHhcCChHHHHHhhC--CCCH
Q 005282          263 VHSSPSIKKEVILAGALQPVIGLLSSS-------CSESKREAALLLGQFAAADSNSKVHIVQRGAVRPLIEMLQ--SPDS  333 (704)
Q Consensus       263 ~~~~~~~~~~~~~~~~l~~L~~ll~~~-------~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~--~~~~  333 (704)
                      -  .+.         .++.+..++.+.       +..++..|+++|.+++..++..        +.+.+..++.  ..++
T Consensus       200 g--~p~---------~i~~l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~p~~--------v~~~l~~i~~n~~e~~  260 (336)
T d1lsha1         200 G--QPN---------SIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK--------VQEIVLPIFLNVAIKS  260 (336)
T ss_dssp             T--CGG---------GHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH--------HHHHHHHHHHCTTSCH
T ss_pred             C--CHh---------HHHHHHHHhcccccccccccHHHHHHHHHHHHHhhhcCcHH--------HHHHHHHHHcCCCCCh
Confidence            5  232         466777777432       4568999999999987644322        2345566654  4578


Q ss_pred             HHHHHHHHHHHHhhcCCchhhhHHhhCChHHHHHhh-cCCChhHHHHHHHHHHHcccC
Q 005282          334 QLKEMSAFALGRLAQDTHNQAGIAQDGGILPLLKLL-DSKNGSLQHNAAFALYGLADN  390 (704)
Q Consensus       334 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll-~~~~~~v~~~a~~~L~~l~~~  390 (704)
                      ++|..|...|...  .+..       ..+..+...+ .+.+..|...+...|.+++.+
T Consensus       261 EvRiaA~~~lm~t--~P~~-------~~l~~i~~~l~~E~~~QV~sfv~S~l~~la~s  309 (336)
T d1lsha1         261 ELRIRSCIVFFES--KPSV-------ALVSMVAVRLRREPNLQVASFVYSQMRSLSRS  309 (336)
T ss_dssp             HHHHHHHHHHHHT--CCCH-------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhc--CCCH-------HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhC
Confidence            9998888887553  2221       1234555555 457888999999999999863

>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Cyclin A/CDK2-associated p45, Skp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.90  E-value=0.019  Score=38.58  Aligned_cols=54  Identities=13%  Similarity=0.246  Sum_probs=43.9

Q ss_pred             EEEEE-cCeEeehhHHHHhhcCHHHHHhhcCCCCCCCCCceEcCCCCHHHHHHHHHHHhc
Q 005282          538 VTFVV-EGKQFYAHRICLLASSDAFRAMFDGGYKEKNAKDVEIPNIRWNVFELMMRFIYT  596 (704)
Q Consensus       538 ~~~~~-~~~~~~~hk~iL~~~s~~f~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~  596 (704)
                      |.++. +|..|.+.+.+. ..|..++.|+.+..    ...|++++++...++.+++|+|.
T Consensus         3 I~L~SsDg~~f~v~~~~a-~~S~tI~~ml~~~~----~~~Ipl~~V~s~iL~kVieyc~~   57 (61)
T d1fs1b2           3 IKLQSSDGEIFEVDVEIA-KQSVTIKTMLEDLG----MDPVPLPNVNAAILKKVIQWCTH   57 (61)
T ss_dssp             EEEECTTSCEEEEEGGGG-GTCHHHHHHHHHTC----CSSEECTTCCHHHHHHHHHHHHH
T ss_pred             EEEEecCCCEEEecHHHH-HHhHHHHHHHhcCC----CCCcccCCcCHHHHHHHHHHHHH
Confidence            45555 788999988854 48999999997632    34799999999999999999974

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=93.37  E-value=2.7  Score=39.02  Aligned_cols=203  Identities=15%  Similarity=0.133  Sum_probs=123.0

Q ss_pred             ChHHHHhhccCCCcCCCCCCCCchHHHHHHHHHHHhhc--CChhhHHHHHHcCCcHHHHHHHhhccCCCCCcchhHHHHH
Q 005282           93 AVPALVEHLQTPPQLTNAQIPYEHEVEKECAFALGLLA--VKPEHQQIIVDTGALPHLVSLLKQYKNGGNSRALSGVIRR  170 (704)
Q Consensus        93 ~i~~L~~lL~~~~~~~~~~~~~d~~v~~~a~~~L~~l~--~~~~~~~~~~~~g~l~~L~~lL~~~~~~~~~~~~~~~~~~  170 (704)
                      ++..+.+++.+..-        ...   .|...+..++  ..|..       ..+..+..++.+.....    .+.+...
T Consensus        89 a~~~i~~~I~~~~l--------s~~---ea~~~l~~l~~~~~Pt~-------~~l~~~~~l~~~~~~~~----~~~l~~~  146 (336)
T d1lsha1          89 ALLFLKRTLASEQL--------TSA---EATQIVASTLSNQQATR-------ESLSYARELLNTSFIRN----RPILRKT  146 (336)
T ss_dssp             HHHHHHHHHHTTCS--------CHH---HHHHHHHHHHHTCCCCH-------HHHHHHHHHHTCHHHHT----CHHHHHH
T ss_pred             HHHHHHHHHHcCCC--------CHH---HHHHHHHHHhccCCCCH-------HHHHHHHHHHcCccccc----chhHHHH
Confidence            45667777777654        122   3444444454  22221       12345566665432100    1367777


Q ss_pred             HHHHHHHhhh----cChhhhhhhhccCCcHHHHHHh----cCCCHHHHHHHHHHHHHhccCCchhhHHhHhcCChHHHHH
Q 005282          171 AADAITNLAH----ENANIKTRVRVEDGIPPLVELL----KFVDVKVQRAAAGALRTLAFKNDENKKLIVECNALPTLVL  242 (704)
Q Consensus       171 a~~~L~~l~~----~~~~~~~~~~~~~~i~~L~~ll----~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~  242 (704)
                      +..+++++..    ..+.+.     ...++.+...+    ...+.+-+..++.+|+|+..  +         +.++.+..
T Consensus       147 a~La~gslv~~~c~~~~~~~-----~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~--p---------~~i~~l~~  210 (336)
T d1lsha1         147 AVLGYGSLVFRYCANTVSCP-----DELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ--P---------NSIKKIQR  210 (336)
T ss_dssp             HHHHHHHHHHHHHTTCSSCC-----GGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--G---------GGHHHHHT
T ss_pred             HHHHHHHHHHHHhcCCCCCc-----HHHHHHHHHHHHHhhcccchHHHHHHHHHHhccCC--H---------hHHHHHHH
Confidence            7777777763    222222     23344555444    46677777888999999973  2         34677777


Q ss_pred             hhcC-------CCHHHHHHHHHHHHHHhcCChhhHHHHHHcCCHHHHHHHhc--CCChhHHHHHHHHHHHHhccCCcchH
Q 005282          243 MLRS-------EDASVHFEAVGVIGNLVHSSPSIKKEVILAGALQPVIGLLS--SSCSESKREAALLLGQFAAADSNSKV  313 (704)
Q Consensus       243 lL~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~~~~~~  313 (704)
                      ++..       ....+|..|+++|.+++...+...        .+.++.++.  ..+.++|..|..+|...   .|..  
T Consensus       211 ~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~p~~v--------~~~l~~i~~n~~e~~EvRiaA~~~lm~t---~P~~--  277 (336)
T d1lsha1         211 FLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKV--------QEIVLPIFLNVAIKSELRIRSCIVFFES---KPSV--  277 (336)
T ss_dssp             TSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHH--------HHHHHHHHHCTTSCHHHHHHHHHHHHHT---CCCH--
T ss_pred             HhcccccccccccHHHHHHHHHHHHHhhhcCcHHH--------HHHHHHHHcCCCCChHHHHHHHHHHHhc---CCCH--
Confidence            7743       256899999999999986654322        244555554  34577887777777652   3332  


Q ss_pred             HHHhcCChHHHHHhhC-CCCHHHHHHHHHHHHHhhcCCc
Q 005282          314 HIVQRGAVRPLIEMLQ-SPDSQLKEMSAFALGRLAQDTH  351 (704)
Q Consensus       314 ~~~~~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~  351 (704)
                           ..+..+...+. .++..|...+...|.+++....
T Consensus       278 -----~~l~~i~~~l~~E~~~QV~sfv~S~l~~la~s~~  311 (336)
T d1lsha1         278 -----ALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSN  311 (336)
T ss_dssp             -----HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCS
T ss_pred             -----HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhCCC
Confidence                 23666777775 4788899999999999987644

>d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Skp1 dimerisation domain-like
superfamily: Skp1 dimerisation domain-like
family: Skp1 dimerisation domain-like
domain: Cyclin A/CDK2-associated p45, Skp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.31  E-value=0.12  Score=33.52  Aligned_cols=41  Identities=20%  Similarity=0.172  Sum_probs=33.0

Q ss_pred             ccChhhHHHHHHHHhhhChHhHHHHHHHHHHhhCChhhHHH
Q 005282          600 DVSVDIAQDLLRAADQYLLEGLKRLCEYSIAQIISVENIML  640 (704)
Q Consensus       600 ~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~~~~~  640 (704)
                      .+..+.+.+++.+|+|+++++|.+.|.+.+...+.-.+..+
T Consensus         9 ~~d~~~Lf~Li~AAnyL~I~~Lldl~c~~vA~~ikgKt~ee   49 (55)
T d1fs1b1           9 KVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEE   49 (55)
T ss_dssp             CSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCHHH
T ss_pred             HcCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHcCCCHHH
Confidence            45667899999999999999999999998876665444333

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.77  E-value=5.1  Score=37.21  Aligned_cols=161  Identities=18%  Similarity=0.215  Sum_probs=105.2

Q ss_pred             CChhhHHHHHHcCCcHHHHHHHhhccCCC---CCcchhHHHHHHHHHHHHhhhcChhhhhhhhccCCcHHHHHHhcCCCH
Q 005282          131 VKPEHQQIIVDTGALPHLVSLLKQYKNGG---NSRALSGVIRRAADAITNLAHENANIKTRVRVEDGIPPLVELLKFVDV  207 (704)
Q Consensus       131 ~~~~~~~~~~~~g~l~~L~~lL~~~~~~~---~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~  207 (704)
                      ....+.+.+ ..+|+..|+.+|..-....   ....+......++.||..+..........+...+++..+...+.++++
T Consensus        34 ~~~sWv~~F-~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~  112 (343)
T d2bnxa1          34 NPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVP  112 (343)
T ss_dssp             SCHHHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSH
T ss_pred             CCchHHHHH-HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhccHHHHHHHHcChHHHHHHHHccCCCch
Confidence            445677777 5678888888886543221   111234677889999999986555556666777889999999999999


Q ss_pred             HHHHHHHHHHHHhccCC--chhhH----------HhHhcCChHHHHHhhcCC-CHHHHHHHHHHHHHHhcCChhh-----
Q 005282          208 KVQRAAAGALRTLAFKN--DENKK----------LIVECNALPTLVLMLRSE-DASVHFEAVGVIGNLVHSSPSI-----  269 (704)
Q Consensus       208 ~~~~~a~~~L~~l~~~~--~~~~~----------~~~~~~~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~-----  269 (704)
                      .++..|...|..+|...  +....          ...+.+-...++..+.+. +.+.+..++..+..+..+.+..     
T Consensus       113 ~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~~~~~ey~~a~m~lIN~li~~~~dl~~R~~  192 (343)
T d2bnxa1         113 NMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVH  192 (343)
T ss_dssp             HHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhccccHHHHHHHHHHHHHHHcCcccHHHHHH
Confidence            99999999999988522  12222          222334567788777654 5677777777777777665432     


Q ss_pred             -HHHHHHcCCHHHHHHHhcC-CChhH
Q 005282          270 -KKEVILAGALQPVIGLLSS-SCSES  293 (704)
Q Consensus       270 -~~~~~~~~~l~~L~~ll~~-~~~~~  293 (704)
                       +..+...|..+ ++.-+.. .++.+
T Consensus       193 lR~E~~~~Gl~~-il~~l~~~~~~~L  217 (343)
T d2bnxa1         193 IRSELMRLGLHQ-VLQELREIENEDM  217 (343)
T ss_dssp             HHHHHHHTTHHH-HHHHHTTCCCHHH
T ss_pred             HHHHHHHCChHH-HHHHHHccCChHH
Confidence             23344555544 4544543 34433

>d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: Skp1 dimerisation domain-like
superfamily: Skp1 dimerisation domain-like
family: Skp1 dimerisation domain-like
domain: Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.07  E-value=0.23  Score=34.00  Aligned_cols=41  Identities=15%  Similarity=0.103  Sum_probs=32.8

Q ss_pred             ccChhhHHHHHHHHhhhChHhHHHHHHHHHHhhCChhhHHH
Q 005282          600 DVSVDIAQDLLRAADQYLLEGLKRLCEYSIAQIISVENIML  640 (704)
Q Consensus       600 ~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~~~~~  640 (704)
                      .++.+.+.+++.+|+|+++++|.+.|.+.+...+...+.-+
T Consensus        10 ~~d~~~L~~li~AAnyL~I~~Ll~l~c~~vA~~ikgkt~ee   50 (70)
T d1nexa1          10 KVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEE   50 (70)
T ss_dssp             CSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCHHH
T ss_pred             hcCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHccCCHHH
Confidence            35678899999999999999999999988866555444333

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.27  E-value=13  Score=39.60  Aligned_cols=219  Identities=12%  Similarity=0.075  Sum_probs=112.8

Q ss_pred             hHHHHHHHHHHHHhhhcChhhhhhhhc----cCCcHHHH----HHhc---CCCHHHHHHHHHHHHHhccCCchhhHHhHh
Q 005282          165 SGVIRRAADAITNLAHENANIKTRVRV----EDGIPPLV----ELLK---FVDVKVQRAAAGALRTLAFKNDENKKLIVE  233 (704)
Q Consensus       165 ~~~~~~a~~~L~~l~~~~~~~~~~~~~----~~~i~~L~----~ll~---~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~  233 (704)
                      |..++.++.+++.+.............    ....+.+.    ..+.   ...+.++..+++++...+....  ...+  
T Consensus       419 ~~~~e~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~~~lr~~~~~~i~~~~~~~~--~~~~--  494 (959)
T d1wa5c_         419 WKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT--KAQL--  494 (959)
T ss_dssp             HHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC--HHHH--
T ss_pred             hHHHHHHHHHHHHHHhhhhhhhhhhhcccchhhHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHhhcc--HHHH--
Confidence            577777888777775321111110000    11122222    2333   3457889999999999875322  1222  


Q ss_pred             cCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhH--------HHHH--HcCCHHHHHHHhcCCChhH-----HHHHH
Q 005282          234 CNALPTLVLMLRSEDASVHFEAVGVIGNLVHSSPSIK--------KEVI--LAGALQPVIGLLSSSCSES-----KREAA  298 (704)
Q Consensus       234 ~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~--------~~~~--~~~~l~~L~~ll~~~~~~~-----~~~a~  298 (704)
                      ..+++.++.+|.+++..++..|++++..++.......        ..+.  -...+..++..+.......     ...+.
T Consensus       495 ~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~~l~~~~~~~~~~~~~~~ll  574 (959)
T d1wa5c_         495 IELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLM  574 (959)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHH
T ss_pred             HHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhcccccchhhccHHHHHhhHHHHHHHHHHHHHhhcchhhhHHHHHHHH
Confidence            2468889999999999999999999999985321100        0000  0112344444443332211     12344


Q ss_pred             HHHHHHhccCCcchHHHHhcCChHHHHHhh----CC-CCHHHHHHHHHHHHHhhcCCc-hhhhHHhhCChHHHHHhhcCC
Q 005282          299 LLLGQFAAADSNSKVHIVQRGAVRPLIEML----QS-PDSQLKEMSAFALGRLAQDTH-NQAGIAQDGGILPLLKLLDSK  372 (704)
Q Consensus       299 ~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll----~~-~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~~~L~~ll~~~  372 (704)
                      .++..+.....+...... ..+++.|...+    ++ .++.....+..+|..+..... ..........++.+...+...
T Consensus       575 ~~l~~ii~~~~~~~~~~~-~~i~~~l~~~~~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~l~~~l~p~i~~~~~~~  653 (959)
T d1wa5c_         575 RSIFRVLQTSEDSIQPLF-PQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSED  653 (959)
T ss_dssp             HHHHHHHHHHTTTTGGGH-HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhcc
Confidence            555554422221111111 12234444433    32 356677777788888765322 112223344566666777666


Q ss_pred             ChhHHHHHHHHHHHcc
Q 005282          373 NGSLQHNAAFALYGLA  388 (704)
Q Consensus       373 ~~~v~~~a~~~L~~l~  388 (704)
                      .......+...+..+.
T Consensus       654 ~~~~~~~~~~l~~~~~  669 (959)
T d1wa5c_         654 IQEFIPYVFQIIAFVV  669 (959)
T ss_dssp             CTTTHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHH
Confidence            6566666666555554