Citrus Sinensis ID: 005295

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700---

MAQDHDEVENGFNSSRNDDGHHHHDKKDKNEGEGGKEAEEFSVERAFDGKEVPSWRKQLTIRAFVVSFVLSVLFTFIVMKLNLTTGIIPSLNVSAGLLGFFFVKTWTKFLENSRILRQPFTRQENTVIQTCVVASSGIAFSGGFGSYLLGMSDRIALQSEDTNLGYKNLSLTWIIGFLFVVSFLGLFSVVPLRKVMIIDFKLTYPSGTATAYLINSFHTPEGARLAKKQVRTLGKFFSFSFLWGFFQWFFTAGDNCGFVSFPTFGLKAYEYRFYFDFSAIYVGVGMICPYIINISVLLGGILSWGLMWPLIEKRKGDWYSADLSPTSLQGLQGYKVFISIALILGDGLYNFCKVLSRTLVGLFYQVRTRNASSDLPVAENSSPETAKLSYDDQRRTRLFLKDQIPTWFAISGYVAIAIVSIIVLPHIFHQLKCYHVLVIYLFAPTLAFCNAYGCGLTDWSLASTYGKLAIFTIGAWAGSSHGGVLAGLAACGVMMNIVSTASDLTQDFKTGYLTLASPRSMFVSQVIGTAIGCIVSPCVFWLFYKAFDDLGVPGSEYAAPFAMVYRNMAKLGVEGFSALPKNCLLLCYVLFGAAIVINLIRDSIRKEWARFIPLPMAMAIPFYLGPYFAIDMCVGSLLLFIWEKIDKAKADAFGPAVASGLICGDGIWSLPSSILALAKVQPPMCMKFLSRRTNARVDKFLGF

cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHEEcccccccEEcccccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccEEEEEEEcccHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHcc

ccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccHcEEEEHHHHEHHHccccccHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcEEEEEEEEccccccHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHcEEEEccccHHEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHccHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHcccHHEEEEHccccHHHHHHHHHHHHHHHHHHHHcHHHHHccHHHHHHcHcccccHHHHHHHHHHHHcccccEEEEEccccccHHHHHHHcc

maqdhdevengfnssrnddghhhhdkkdknegeggkeaeEFSVerafdgkevpswrkqLTIRAFVVSFVLSVLFTFIVMKLNlttgiipslnvsagLLGFFFVKTWTKFLEnsrilrqpftrqentVIQTCvvassgiafsggfgsYLLGmsdrialqsedtnlgyknlSLTWIIGFLFVVSFLGLFSVVPLRKVMIIdfkltypsgtatAYLInsfhtpegaRLAKKQVRTLGKFFSFSFLWGFFQWFftagdncgfvsfptfglkayeYRFYFDFSAIYVGVGMICPYIINISVLLGGILswglmwpliekrkgdwysadlsptslqglqgYKVFISIALILGDGLYNFCKVLSRTLVGLFYQVrtrnassdlpvaensspetaklsyddqrRTRLFLKDQIPTWFAISGYVAIAIVSIIVLPHIFHQLKCYHVLVIYLFAPTLAFCNaygcgltdwslastyGKLAIFTIGawagsshggVLAGLAACGVMMNIVSTASdltqdfktgyltlasprsmFVSQVIGTAIGCIVSPCVFWLFYKAfddlgvpgseyaapFAMVYRNMAKLGVEGFSALPKNCLLLCYVLFGAAIVINLIRDSIRKEWARfiplpmamaipfylgpyfaidMCVGSLLLFIWEKIDKakadafgpavasglicgdgiwslpSSILALakvqppmcmkfLSRRTNARVDKFLGF

maqdhdevengfnssrnddghhhhdkkdknegeggkEAEEFsverafdgkevpswrkqLTIRAFVVSFVLSVLFTFIVMKLNLTTGIIPSLNVSAGLLGFFFVKTWTKFLENSRilrqpftrqeNTVIQTCVVASSGIAFSGGFGSYLLGMSDRIALQSEDTNLGYKNLSLTWIIGFLFVVSFLGLFSVVPLRKVMIIDFKLTYPSGTATAYLINSFHTPEGARLAKKQVRTLGKFFSFSFLWGFFQWFFTAGDNCGFVSFPTFGLKAYEYRFYFDFSAIYVGVGMICPYIINISVLLGGILSWGLMWPLIEKRKGDWYSADLSPTSLQGLQGYKVFISIALILGDGLYNFCKVLSRTLVGLFYQVRTrnassdlpvaensspetaklsyddqRRTRLFLKDQIPTWFAISGYVAIAIVSIIVLPHIFHQLKCYHVLVIYLFAPTLAFCNAYGCGLTDWSLASTYGKLAIFTIGAWAGSSHGGVLAGLAACGVMMNIVSTASDLTQDFKTGYLTLASPRSMFVSQVIGTAIGCIVSPCVFWLFYKAFDDLGVPGSEYAAPFAMVYRNMAKLGVEGFSALPKNCLLLCYVLFGAAIVINLIRDSIRKEWARFIPLPMAMAIPFYLGPYFAIDMCVGSLLLFIWEKIDKAKADAFGPAVASGLICGDGIWSLPSSILALAKVQPPMCMKFLSRRTNARVDKFLGF

MAQDHDEVENGFNSSRNddghhhhdkkdknegeggkeaeeFSVERAFDGKEVPSWRKQLTIRAfvvsfvlsvlftfIVMKLNLTTGIIPSLNVSAGLLGFFFVKTWTKFLENSRILRQPFTRQENTVIQTCVVassgiafsggfgsYLLGMSDRIALQSEDTNLGYKNLSLTWIIgflfvvsflglfsvvplRKVMIIDFKLTYPSGTATAYLINSFHTPEGARLAKKQVRTlgkffsfsflwgffqwffTAGDNCGFVSFPTFGLKAYEYRFYFDFSAIYVGVGMICPYIINISVLLGGILSWGLMWPLIEKRKGDWYSADLSPTSLQGLQGYKVFISIALILGDGLYNFCKVLSRTLVGLFYQVRTRNASSDLPVAENSSPETAKLSYDDQRRTRLFLKDQIPTWFAISGYVAIAIVSIIVLPHIFHQLKCYHVLVIYLFAPTLAFCNAYGCGLTDWSLASTYGKLAIFTIGAWAGSSHggvlaglaacgvMMNIVSTASDLTQDFKTGYLTLASPRSMFVSQVIGTAIGCIVSPCVFWLFYKAFDDLGVPGSEYAAPFAMVYRNMAKLGVEGFSALPKNCLLLCYVLFGAAIVINLIRDSIRKEWARFIPLPMAMAIPFYLGPYFAIDMCVGSLLLFIWEKIDKAKADAFGPAVASGLICGDGIWSLPSSILALAKVQPPMCMKFLSRRTNARVDKFLGF

**************************************************EVPSWRKQLTIRAFVVSFVLSVLFTFIVMKLNLTTGIIPSLNVSAGLLGFFFVKTWTKFLENSRILRQPFTRQENTVIQTCVVASSGIAFSGGFGSYLLGMSDRIALQSEDTNLGYKNLSLTWIIGFLFVVSFLGLFSVVPLRKVMIIDFKLTYPSGTATAYLINSFHTPEGARLAKKQVRTLGKFFSFSFLWGFFQWFFTAGDNCGFVSFPTFGLKAYEYRFYFDFSAIYVGVGMICPYIINISVLLGGILSWGLMWPLIEKRKGDWYSADLSPTSLQGLQGYKVFISIALILGDGLYNFCKVLSRTLVGLFYQVRT**************************RTRLFLKDQIPTWFAISGYVAIAIVSIIVLPHIFHQLKCYHVLVIYLFAPTLAFCNAYGCGLTDWSLASTYGKLAIFTIGAWAGSSHGGVLAGLAACGVMMNIVSTASDLTQDFKTGYLTLASPRSMFVSQVIGTAIGCIVSPCVFWLFYKAFDDLGVPGSEYAAPFAMVYRNMAKLGVEGFSALPKNCLLLCYVLFGAAIVINLIRDSIRKEWARFIPLPMAMAIPFYLGPYFAIDMCVGSLLLFIWEKIDKAKADAFGPAVASGLICGDGIWSLPSSILALAKVQPPMCMKFLSRR***********

*****************************************************SWRKQLTIRAFVVSFVLSVLFTFIVMKLNLTTGIIPSLNVSAGLLGFFFVKTWTKFLENSRILRQPFTRQENTVIQTCVVASSGIAFSGGFGSYLLGMSDRIALQSEDTNLGYKNLSLTWIIGFLFVVSFLGLFSVVPLRKVMIIDFKLTYPSGTATAYLINSFHTPEGARLAKKQVRTLGKFFSFSFLWGFFQWFFTAGDNCGFVSFPTFGLKAYEYRFYFDFSAIYVGVGMICPYIINISVLLGGILSWGLMWPLIEKRKGDWYSADLSPTSLQGLQGYKVFISIALILGDGLYNFCKVLSRTLVGLFYQVRTR*************************RTRLFLKDQIPTWFAISGYVAIAIVSIIVLPHIFHQLKCYHVLVIYLFAPTLAFCNAYGCGLTDWSLASTYGKLAIFTIGAWAGSSHGGVLAGLAACGVMMNIVSTASDLTQDFKTGYLTLASPRSMFVSQVIGTAIGCIVSPCVFWLFYKAFDDLGVPGSEYAAPFAMVYRNMAKLGVEGFSALPKNCLLLCYVLFGAAIVINLIRDSIRKEWARFIPLPMAMAIPFYLGPYFAIDMCVGSLLLFIWEKIDKAKADAFGPAVASGLICGDGIWSLPSSILALAKVQPPMCMKFLSRRTNARVDKFLGF

***********FNSSRN*********************EEFSVERAFDGKEVPSWRKQLTIRAFVVSFVLSVLFTFIVMKLNLTTGIIPSLNVSAGLLGFFFVKTWTKFLENSRILRQPFTRQENTVIQTCVVASSGIAFSGGFGSYLLGMSDRIALQSEDTNLGYKNLSLTWIIGFLFVVSFLGLFSVVPLRKVMIIDFKLTYPSGTATAYLINSFHTPEGARLAKKQVRTLGKFFSFSFLWGFFQWFFTAGDNCGFVSFPTFGLKAYEYRFYFDFSAIYVGVGMICPYIINISVLLGGILSWGLMWPLIEKRKGDWYSADLSPTSLQGLQGYKVFISIALILGDGLYNFCKVLSRTLVGLFYQVRTRNAS****************SYDDQRRTRLFLKDQIPTWFAISGYVAIAIVSIIVLPHIFHQLKCYHVLVIYLFAPTLAFCNAYGCGLTDWSLASTYGKLAIFTIGAWAGSSHGGVLAGLAACGVMMNIVSTASDLTQDFKTGYLTLASPRSMFVSQVIGTAIGCIVSPCVFWLFYKAFDDLGVPGSEYAAPFAMVYRNMAKLGVEGFSALPKNCLLLCYVLFGAAIVINLIRDSIRKEWARFIPLPMAMAIPFYLGPYFAIDMCVGSLLLFIWEKIDKAKADAFGPAVASGLICGDGIWSLPSSILALAKVQPPMCMKFLSRRTNARVDKFLGF

***********************************************DGKEVPSWRKQLTIRAFVVSFVLSVLFTFIVMKLNLTTGIIPSLNVSAGLLGFFFVKTWTKFLENSRILRQPFTRQENTVIQTCVVASSGIAFSGGFGSYLLGMSDRIALQSEDTNLGYKNLSLTWIIGFLFVVSFLGLFSVVPLRKVMIIDFKLTYPSGTATAYLINSFHTPEGARLAKKQVRTLGKFFSFSFLWGFFQWFFTAGDNCGFVSFPTFGLKAYEYRFYFDFSAIYVGVGMICPYIINISVLLGGILSWGLMWPLIEKRKGDWYSADLSPTSLQGLQGYKVFISIALILGDGLYNFCKVLSRTLVGLFYQVRTRN******************SYDDQRRTRLFLKDQIPTWFAISGYVAIAIVSIIVLPHIFHQLKCYHVLVIYLFAPTLAFCNAYGCGLTDWSLASTYGKLAIFTIGAWAGSSHGGVLAGLAACGVMMNIVSTASDLTQDFKTGYLTLASPRSMFVSQVIGTAIGCIVSPCVFWLFYKAFDDLGVPGSEYAAPFAMVYRNMAKLGVEGFSALPKNCLLLCYVLFGAAIVINLIRDSIRKEWARFIPLPMAMAIPFYLGPYFAIDMCVGSLLLFIWEKIDKAKADAFGPAVASGLICGDGIWSLPSSILALAKVQPPMCMKFLSRRTNARVDKFLGF

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		703	2.2.26 [Sep-21-2011]
Q9SHY2		688	Probable metal-nicotianam	yes	no	0.967	0.988	0.725	0.0
Q9LUN2		714	Probable metal-nicotianam	no	no	0.980	0.964	0.742	0.0
Q6R3K4		724	Probable metal-nicotianam	no	no	0.938	0.911	0.770	0.0
Q5JQD7		717	Probable metal-nicotianam	yes	no	0.964	0.945	0.708	0.0
Q0J932		686	Probable metal-nicotianam	yes	no	0.955	0.979	0.681	0.0
Q6H7J6		727	Probable metal-nicotianam	no	no	0.944	0.913	0.713	0.0
Q7XKF4		724	Probable metal-nicotianam	no	no	0.935	0.908	0.692	0.0
Q7X660		712	Probable metal-nicotianam	no	no	0.937	0.925	0.672	0.0
Q0E4J6		694	Probable metal-nicotianam	no	no	0.944	0.956	0.591	0.0
Q7XRV2		678	Probable metal-nicotianam	no	no	0.910	0.943	0.579	0.0

>sp\|Q9SHY2\|YSL7_ARATH Probable metal-nicotianamine transporter YSL7 OS=Arabidopsis thaliana GN=YSL7 PE=2 SV=1	Back alignment and function desciption

 Score = 1054 bits (2725), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 507/699 (72%), Positives = 592/699 (84%), Gaps = 19/699 (2%)

Query: 7   EVENGFNSSRNDDGHHHHDKKDKNEGEGGKEAEEFSVERAFD-GKEVPS-WRKQLTIRAF 64
           EVE     S+ DD        D N G    E EE SVER F+   E+P  W+KQLT RA 
Sbjct: 2   EVER----SKKDD--------DLNNGSKSNEEEEISVERIFEESNEIPPPWQKQLTFRAL 49

Query: 65  VVSFVLSVLFTFIVMKLNLTTGIIPSLNVSAGLLGFFFVKTWTKFLENSRILRQPFTRQE 124
           +VSF+L++LFTF+VMKLNLTTGIIPSLN+SAGLLGFFFVK+WTK L  +  L+QPFTRQE
Sbjct: 50  IVSFILAILFTFVVMKLNLTTGIIPSLNISAGLLGFFFVKSWTKILNKAGFLKQPFTRQE 109

Query: 125 NTVIQTCVVASSGIAFSGGFGSYLLGMSDRIALQSEDTN--LGYKNLSLTWIIGFLFVVS 182
           NTVIQTCVVASSGIAFSGGFGSYL GMSD +A QS + N  L  KN  L W+IGFLFVVS
Sbjct: 110 NTVIQTCVVASSGIAFSGGFGSYLFGMSDVVAKQSAEANTPLNIKNPHLGWMIGFLFVVS 169

Query: 183 FLGLFSVVPLRKVMIIDFKLTYPSGTATAYLINSFHTPEGARLAKKQVRTLGKFFSFSFL 242
           FLGLFSVVPLRK+MI+DFKLTYPSGTATA+LINSFHTP+GA+LAKKQVR LGKFFSFSFL
Sbjct: 170 FLGLFSVVPLRKIMIVDFKLTYPSGTATAHLINSFHTPQGAKLAKKQVRALGKFFSFSFL 229

Query: 243 WGFFQWFFTAGDNCGFVSFPTFGLKAYEYRFYFDFSAIYVGVGMICPYIINISVLLGGIL 302
           WGFFQWFF  GD CGF +FPTFGLKAYE +FYFDFSA YVGVGMICPY+IN+S+L+G IL
Sbjct: 230 WGFFQWFFATGDGCGFANFPTFGLKAYENKFYFDFSATYVGVGMICPYLINVSLLIGAIL 289

Query: 303 SWGLMWPLIEKRKGDWYSADLSPTSLQGLQGYKVFISIALILGDGLYNFCKVLSRTLVGL 362
           SWG+MWPLI  +KG WY+ADLS TSL GLQGY+VFI+IA+ILGDGLYNF KVL RT+ GL
Sbjct: 290 SWGVMWPLIGAQKGKWYAADLSSTSLHGLQGYRVFIAIAMILGDGLYNFIKVLGRTVFGL 349

Query: 363 FYQVRTRNASSDLPVAENSSPETAKLSYDDQRRTRLFLKDQIPTWFAISGYVAIAIVSII 422
           + Q + ++    LP+ +++S     +SYDD+RRT LFLKD+IP+WFA++GYV +AIVSII
Sbjct: 350 YKQFKNKDV---LPINDHTSTAPVTISYDDKRRTELFLKDRIPSWFAVTGYVVLAIVSII 406

Query: 423 VLPHIFHQLKCYHVLVIYLFAPTLAFCNAYGCGLTDWSLASTYGKLAIFTIGAWAGSSHG 482
            +PHIFHQLK YH+L++Y+ AP LAFCNAYGCGLTDWSLASTYGKLAIFTIGAWAG+S+G
Sbjct: 407 TVPHIFHQLKWYHILIMYIIAPVLAFCNAYGCGLTDWSLASTYGKLAIFTIGAWAGASNG 466

Query: 483 GVLAGLAACGVMMNIVSTASDLTQDFKTGYLTLASPRSMFVSQVIGTAIGCIVSPCVFWL 542
           GVLAGLAACGVMMNIVSTASDL QDFKTGY+TLASPRSMF+SQ IGTA+GC++SPCVFWL
Sbjct: 467 GVLAGLAACGVMMNIVSTASDLMQDFKTGYMTLASPRSMFLSQAIGTAMGCVISPCVFWL 526

Query: 543 FYKAFDDLGVPGSEYAAPFAMVYRNMAKLGVEGFSALPKNCLLLCYVLFGAAIVINLIRD 602
           FYKAF D G PG+ Y AP+A+VYRNM+ LGVEGFSALPK+CL+LCY+ F AA+++N IRD
Sbjct: 527 FYKAFPDFGQPGTAYPAPYALVYRNMSILGVEGFSALPKHCLMLCYIFFAAAVIVNGIRD 586

Query: 603 SIRKEWARFIPLPMAMAIPFYLGPYFAIDMCVGSLLLFIWEKIDKAKADAFGPAVASGLI 662
           ++  +WARFIPLPMAMAIPFYLG YF IDMC+GSL+LFIW K++K KADA+  AVASGLI
Sbjct: 587 ALGPKWARFIPLPMAMAIPFYLGGYFTIDMCLGSLILFIWRKLNKPKADAYSSAVASGLI 646

Query: 663 CGDGIWSLPSSILALAKVQPPMCMKFLSRRTNARVDKFL 701
           CG+GIW+LPSSILALA V+ P+CMKFLS  +N +VD FL
Sbjct: 647 CGEGIWTLPSSILALAGVKAPICMKFLSMASNNKVDAFL 685

May be involved in the transport of nicotianamine-chelated metals.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q9LUN2\|YSL5_ARATH Probable metal-nicotianamine transporter YSL5 OS=Arabidopsis thaliana GN=YSL5 PE=1 SV=1	Back alignment and function description

>sp\|Q6R3K4\|YSL8_ARATH Probable metal-nicotianamine transporter YSL8 OS=Arabidopsis thaliana GN=YSL8 PE=1 SV=2	Back alignment and function description

>sp\|Q5JQD7\|YSL12_ORYSJ Probable metal-nicotianamine transporter YSL12 OS=Oryza sativa subsp. japonica GN=YSL12 PE=2 SV=2	Back alignment and function description

>sp\|Q0J932\|YSL10_ORYSJ Probable metal-nicotianamine transporter YSL10 OS=Oryza sativa subsp. japonica GN=YSL10 PE=2 SV=2	Back alignment and function description

>sp\|Q6H7J6\|YSL14_ORYSJ Probable metal-nicotianamine transporter YSL14 OS=Oryza sativa subsp. japonica GN=YSL14 PE=2 SV=1	Back alignment and function description

>sp\|Q7XKF4\|YSL13_ORYSJ Probable metal-nicotianamine transporter YSL13 OS=Oryza sativa subsp. japonica GN=YSL13 PE=2 SV=2	Back alignment and function description

>sp\|Q7X660\|YSL11_ORYSJ Probable metal-nicotianamine transporter YSL11 OS=Oryza sativa subsp. japonica GN=YSL11 PE=2 SV=1	Back alignment and function description

>sp\|Q0E4J6\|YSL8_ORYSJ Probable metal-nicotianamine transporter YSL8 OS=Oryza sativa subsp. japonica GN=YSL8 PE=2 SV=1	Back alignment and function description

>sp\|Q7XRV2\|YSL6_ORYSJ Probable metal-nicotianamine transporter YSL6 OS=Oryza sativa subsp. japonica GN=YSL6 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		703
224116528		668	oligopeptide transporter OPT family [Pop	0.938	0.988	0.813	0.0
255558132		694	oligopeptide transporter, putative [Rici	0.948	0.961	0.797	0.0
356529418		703	PREDICTED: probable metal-nicotianamine	0.988	0.988	0.762	0.0
356560021		702	PREDICTED: probable metal-nicotianamine	0.991	0.992	0.752	0.0
357499731		712	Yellow stripe-like protein 2.1 [Medicago	0.992	0.980	0.743	0.0
350285877		733	yellow stripe-like protein 5 [Malus xiao	0.994	0.953	0.731	0.0
255538056		709	oligopeptide transporter, putative [Rici	0.990	0.981	0.756	0.0
225423773		713	PREDICTED: probable metal-nicotianamine	0.991	0.977	0.742	0.0
225457510		704	PREDICTED: probable metal-nicotianamine	0.997	0.995	0.757	0.0
224078942		689	oligopeptide transporter OPT family [Pop	0.965	0.985	0.776	0.0

>gi\|224116528\|ref\|XP_002331919.1\| oligopeptide transporter OPT family [Populus trichocarpa] gi\|222874591\|gb\|EEF11722.1\| oligopeptide transporter OPT family [Populus trichocarpa]	Back alignment and taxonomy information

 Score = 1123 bits (2905), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 537/660 (81%), Positives = 604/660 (91%)

Query: 42  SVERAFDGKEVPSWRKQLTIRAFVVSFVLSVLFTFIVMKLNLTTGIIPSLNVSAGLLGFF 101
           SVER F+ +EVPSWR QLT+RAFVVSFVLS+LF+ IVMKLNLTTGIIPSLNVSAGLLGFF
Sbjct: 9   SVERIFENQEVPSWRNQLTLRAFVVSFVLSILFSVIVMKLNLTTGIIPSLNVSAGLLGFF 68

Query: 102 FVKTWTKFLENSRILRQPFTRQENTVIQTCVVASSGIAFSGGFGSYLLGMSDRIALQSED 161
           F+KTWTKFLE S +L+QPFTRQENTVIQTCVVASSGIAFSGGFGSYL GMS  +A QS +
Sbjct: 69  FIKTWTKFLEKSGLLKQPFTRQENTVIQTCVVASSGIAFSGGFGSYLFGMSGTVAKQSTE 128

Query: 162 TNLGYKNLSLTWIIGFLFVVSFLGLFSVVPLRKVMIIDFKLTYPSGTATAYLINSFHTPE 221
            +  +KN SL+W+IGFLFVVSFLGLFSVVPLRKVMIIDFKLTYPSGTATAYLINSFHTP 
Sbjct: 129 DSDAFKNPSLSWMIGFLFVVSFLGLFSVVPLRKVMIIDFKLTYPSGTATAYLINSFHTPA 188

Query: 222 GARLAKKQVRTLGKFFSFSFLWGFFQWFFTAGDNCGFVSFPTFGLKAYEYRFYFDFSAIY 281
           GA+LAKKQV+ LGKFFSFSFLWGFFQWF+TAGD CGFV FP+ GLKAYE +F+FDFSA Y
Sbjct: 189 GAKLAKKQVKALGKFFSFSFLWGFFQWFYTAGDGCGFVEFPSLGLKAYENKFFFDFSATY 248

Query: 282 VGVGMICPYIINISVLLGGILSWGLMWPLIEKRKGDWYSADLSPTSLQGLQGYKVFISIA 341
           VGVGMICPYIINISVLLGGILSWGLMWPLI+ +KGDWYSADL  +SL GLQGYKVFI+IA
Sbjct: 249 VGVGMICPYIINISVLLGGILSWGLMWPLIDTKKGDWYSADLKSSSLHGLQGYKVFIAIA 308

Query: 342 LILGDGLYNFCKVLSRTLVGLFYQVRTRNASSDLPVAENSSPETAKLSYDDQRRTRLFLK 401
           +ILGDGLYNF KVLSRTL  LF+Q++ ++A+  LP+A  SSPET+++SY+DQRRT+LFLK
Sbjct: 309 MILGDGLYNFFKVLSRTLTVLFFQLQRKDATGALPIAGRSSPETSRISYNDQRRTQLFLK 368

Query: 402 DQIPTWFAISGYVAIAIVSIIVLPHIFHQLKCYHVLVIYLFAPTLAFCNAYGCGLTDWSL 461
           DQIPTWFA++GYVAIA +S   LPHIF +LK Y++LVIY+FAP LAFCNAYGCGLTDWSL
Sbjct: 369 DQIPTWFAVAGYVAIAAISTATLPHIFPELKWYYILVIYIFAPALAFCNAYGCGLTDWSL 428

Query: 462 ASTYGKLAIFTIGAWAGSSHGGVLAGLAACGVMMNIVSTASDLTQDFKTGYLTLASPRSM 521
           ASTYGKLAIF IGAWAG+SHGGVLAGLAACGVMMNIVSTASDL+QDFKTGYLTL+SPRSM
Sbjct: 429 ASTYGKLAIFVIGAWAGASHGGVLAGLAACGVMMNIVSTASDLSQDFKTGYLTLSSPRSM 488

Query: 522 FVSQVIGTAIGCIVSPCVFWLFYKAFDDLGVPGSEYAAPFAMVYRNMAKLGVEGFSALPK 581
           FVSQ+IGTA+GCI+SPCVFWLF+KAF DLG PGS+Y AP+A VYRNMA LGV+GFS+LPK
Sbjct: 489 FVSQLIGTAMGCIISPCVFWLFFKAFKDLGTPGSQYPAPYATVYRNMAILGVDGFSSLPK 548

Query: 582 NCLLLCYVLFGAAIVINLIRDSIRKEWARFIPLPMAMAIPFYLGPYFAIDMCVGSLLLFI 641
           NCL LCY  FGAAI+INLI+D++ K+WARFIP PMAMAIPFY+G YFAIDMCVGSL+LFI
Sbjct: 549 NCLYLCYGFFGAAILINLIKDALGKKWARFIPNPMAMAIPFYIGSYFAIDMCVGSLILFI 608

Query: 642 WEKIDKAKADAFGPAVASGLICGDGIWSLPSSILALAKVQPPMCMKFLSRRTNARVDKFL 701
           WEKIDKAKADAFGPAVASGLICGDGIW+LPS+ILAL  V+PP+CMKFLSRRTNA+VD FL
Sbjct: 609 WEKIDKAKADAFGPAVASGLICGDGIWTLPSAILALVGVKPPICMKFLSRRTNAKVDAFL 668

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255558132\|ref\|XP_002520094.1\| oligopeptide transporter, putative [Ricinus communis] gi\|223540722\|gb\|EEF42283.1\| oligopeptide transporter, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|356529418\|ref\|XP_003533289.1\| PREDICTED: probable metal-nicotianamine transporter YSL7-like [Glycine max]	Back alignment and taxonomy information

>gi\|356560021\|ref\|XP_003548294.1\| PREDICTED: probable metal-nicotianamine transporter YSL7-like [Glycine max]	Back alignment and taxonomy information

>gi\|357499731\|ref\|XP_003620154.1\| Yellow stripe-like protein 2.1 [Medicago truncatula] gi\|355495169\|gb\|AES76372.1\| Yellow stripe-like protein 2.1 [Medicago truncatula]	Back alignment and taxonomy information

>gi\|350285877\|gb\|AEQ28190.1\| yellow stripe-like protein 5 [Malus xiaojinensis]	Back alignment and taxonomy information

>gi\|255538056\|ref\|XP_002510093.1\| oligopeptide transporter, putative [Ricinus communis] gi\|223550794\|gb\|EEF52280.1\| oligopeptide transporter, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|225423773\|ref\|XP_002277292.1\| PREDICTED: probable metal-nicotianamine transporter YSL7 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|225457510\|ref\|XP_002269277.1\| PREDICTED: probable metal-nicotianamine transporter YSL7-like isoform 1 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224078942\|ref\|XP_002305689.1\| oligopeptide transporter OPT family [Populus trichocarpa] gi\|222848653\|gb\|EEE86200.1\| oligopeptide transporter OPT family [Populus trichocarpa]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		703
TAIR\|locus:2090502		714	YSL5 "AT3G17650" [Arabidopsis	0.938	0.924	0.673	1.1e-247
TAIR\|locus:2007715		724	YSL8 "AT1G48370" [Arabidopsis	0.938	0.911	0.674	4.3e-244
TAIR\|locus:2018491		688	YSL7 "AT1G65730" [Arabidopsis	0.934	0.954	0.643	3.4e-235
TAIR\|locus:2168656		675	YSL3 "YELLOW STRIPE like 3" [A	0.899	0.936	0.502	2.4e-170
TAIR\|locus:2152896		664	YSL2 "AT5G24380" [Arabidopsis	0.913	0.966	0.496	3.6e-169
TAIR\|locus:2091970		676	YSL6 "AT3G27020" [Arabidopsis	0.901	0.937	0.496	1.2e-168
TAIR\|locus:2163036		670	YSL4 "AT5G41000" [Arabidopsis	0.903	0.947	0.490	4.5e-162
TAIR\|locus:2134956		673	YSL1 "YELLOW STRIPE like 1" [A	0.903	0.943	0.476	1.5e-161
TAIR\|locus:2163508		216	AT5G45450 "AT5G45450" [Arabido	0.287	0.935	0.721	4.1e-81
DICTYBASE\|DDB_G0291554		777	DDB_G0291554 "Putative oligope	0.381	0.344	0.275	2.2e-32

TAIR\|locus:2090502 YSL5 "AT3G17650" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2386 (845.0 bits), Expect = 1.1e-247, P = 1.1e-247
 Identities = 448/665 (67%), Positives = 519/665 (78%)

Query:    42 SVERAFDGKEVPSWRKQLTIRAXXXXXXXXXXXXXIVMKLNLTTGIIPSLNVSAGLLGFF 101
             SVE+ F+ +EVPSW+KQLT+RA             IVMKLNLTTGIIPSLNVSAGLLGFF
Sbjct:    46 SVEKIFESREVPSWKKQLTVRAFVVSFMLSILFSFIVMKLNLTTGIIPSLNVSAGLLGFF 105

Query:   102 FVKTWTKFLENSRILRQPFTRQENTVIQTCVVXXXXXXXXXXXXXYLLGMSDRIALQSED 161
             FVKTWTK L  S +L+QPFTRQENTVIQTCVV             YL GMS+RIA QS D
Sbjct:   106 FVKTWTKMLHRSGLLKQPFTRQENTVIQTCVVASSGIAFSGGFGTYLFGMSERIATQSGD 165

Query:   162 TNLGYKNLSLTWIIXXXXXXXXXXXXXXXXXRKVMIIDFKLTYPSGTATAYLINSFHTPE 221
              + G K+ SL WII                 RK+M+IDFKLTYPSGTATA+LINSFHTP+
Sbjct:   166 VSRGVKDPSLGWIIGFLFVVSFLGLFSVVPLRKIMVIDFKLTYPSGTATAHLINSFHTPQ 225

Query:   222 GARLAKKQVRTXXXXXXXXXXXXXXXXXXTAGDNCGFVSFPTFGLKAYEYRFYFDFSAIY 281
             GA+LAKKQVR                   T G+NCGF +FPTFGLKAY+Y+FYFDFSA Y
Sbjct:   226 GAKLAKKQVRVLGKFFSLSFFWSFFQWFFTGGENCGFSNFPTFGLKAYQYKFYFDFSATY 285

Query:   282 VGVGMICPYIINISVLLGGILSWGLMWPLIEKRKGDWYSADLSPTSLQGLQGYKVFISIA 341
             VGVGMICPYIINISVLLGGILSWG+MWPLIE +KGDW+  ++  +S+ GLQ YKVFI++A
Sbjct:   286 VGVGMICPYIINISVLLGGILSWGIMWPLIETKKGDWFPDNVPSSSMHGLQAYKVFIAVA 345

Query:   342 LILGDGLYNFCKVLSRTLVGLFYQVR---TRNASSDLPVAEN--SSPETAKLSYDDQRRT 396
             +ILGDGLYNFCKVLSRTL GLF Q+R   T  + +   + E+  +SP + K SYDDQRRT
Sbjct:   346 IILGDGLYNFCKVLSRTLSGLFVQLRGPTTSISRTSFTLEEDPHASPLSPKQSYDDQRRT 405

Query:   397 RLFLKDQIPTWFAISGYVAIAIVSIIVLPHIFHQLKCYHVLVIYLFAPTLAFCNAYGCGL 456
             R FLKDQIPTWFA+ GY+ IA  S  +LPH+FHQL+ Y++LVIY+ AP LAFCNAYG GL
Sbjct:   406 RFFLKDQIPTWFAVGGYITIAATSTAILPHMFHQLRWYYILVIYICAPVLAFCNAYGAGL 465

Query:   457 TDWSLASTYGKLAIFTIGAWAGSSHXXXXXXXXXXXXMMNIVSTASDLTQDFKTGYLTLA 516
             TDWSLASTYGKLAIFTIGAWAGS H            MMNIVSTASDLTQDFKTGYLTL+
Sbjct:   466 TDWSLASTYGKLAIFTIGAWAGSEHGGMLAGLAACGVMMNIVSTASDLTQDFKTGYLTLS 525

Query:   517 SPRSMFVSQVIGTAIGCIVSPCVFWLFYKAFDDLGVPGSEYAAPFAMVYRNMAKLGVEGF 576
             SP+SMFVSQVIGTA+GC+VSPCVFWLFYKAFDDLG+P +EY APFA VYR+MAKLGVEG 
Sbjct:   526 SPKSMFVSQVIGTAMGCVVSPCVFWLFYKAFDDLGLPNTEYPAPFATVYRSMAKLGVEGV 585

Query:   577 SALPKNCLLLCYVLFGAAIVINLIRDSIRKEWARFIPLPMAMAIPFYLGPYFAIDMCVGS 636
             ++LP+ CL+LCY  FG AI++N+++DS+   W RFIPLPMAMAIPF+LGPYFAIDMCVGS
Sbjct:   586 ASLPRECLVLCYAFFGVAILVNIVKDSLHSNWGRFIPLPMAMAIPFFLGPYFAIDMCVGS 645

Query:   637 LLLFIWEKIDKAKADAFGPAVASGLICGDGIWSLPSSILALAKVQPPMCMKFLSRRTNAR 696
             L+LFIWE++D AKA+AFG AVASGLICGDGIWSLPSS+LA+A V PP+CMKFLS  TN++
Sbjct:   646 LILFIWERVDAAKAEAFGTAVASGLICGDGIWSLPSSVLAIAGVNPPVCMKFLSSATNSK 705

Query:   697 VDKFL 701
             VD FL
Sbjct:   706 VDNFL 710

GO:0006857 "oligopeptide transport" evidence=ISS

GO:0015198 "oligopeptide transporter activity" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR\|locus:2007715 YSL8 "AT1G48370" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2018491 YSL7 "AT1G65730" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2168656 YSL3 "YELLOW STRIPE like 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2152896 YSL2 "AT5G24380" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2091970 YSL6 "AT3G27020" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2163036 YSL4 "AT5G41000" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2134956 YSL1 "YELLOW STRIPE like 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2163508 AT5G45450 "AT5G45450" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0291554 DDB_G0291554 "Putative oligopeptide transporter YGL114W" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6R3K4	YSL8_ARATH	No assigned EC number	0.7702	0.9388	0.9116	no	no
Q9LUN2	YSL5_ARATH	No assigned EC number	0.7428	0.9800	0.9649	no	no
Q9SHY2	YSL7_ARATH	No assigned EC number	0.7253	0.9672	0.9883	yes	no
Q5JQD7	YSL12_ORYSJ	No assigned EC number	0.7087	0.9644	0.9456	yes	no
Q0J932	YSL10_ORYSJ	No assigned EC number	0.6813	0.9559	0.9795	yes	no
Q6H7J6	YSL14_ORYSJ	No assigned EC number	0.7130	0.9445	0.9133	no	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		703
pfam03169		619	pfam03169, OPT, OPT oligopeptide transporter prote	1e-154
TIGR00728		606	TIGR00728, OPT_sfam, oligopeptide transporter, OPT	1e-103
COG1297		624	COG1297, COG1297, Predicted membrane protein [Func	8e-34
TIGR00733		591	TIGR00733, TIGR00733, putative oligopeptide transp	4e-22
TIGR00727		681	TIGR00727, ISP4_OPT, small oligopeptide transporte	1e-04

>gnl\|CDD\|217401 pfam03169, OPT, OPT oligopeptide transporter protein	Back alignment and domain information

 Score =  460 bits (1186), Expect = e-154
 Identities = 185/643 (28%), Positives = 287/643 (44%), Gaps = 48/643 (7%)

Query: 58  QLTIRAFVVSFVLSVLFTFIVMKLNLTTGIIPSLNVSAGLLGFFFVKTWTKFLENSR--I 115
           +LT RA V+  +L++L   + M   L TG +   ++ A LL +   K   + L   R  +
Sbjct: 1   ELTFRAVVLGILLAILGAAVNMYFGLKTGSVSISSIPAALLAYPLGKALARILGGIRFSL 60

Query: 116 LRQPFTRQENTVIQTCVVASSGIAFSGGFGSYLLGMSDRIALQSEDTNLGYKNLSLTWII 175
              PFT +EN +IQT   A +  A++GGF   L  +               ++ S  + I
Sbjct: 61  NPGPFTIKENNLIQTMASAGASTAYAGGFIFVLPAL-----------LFYGQSFSFGYAI 109

Query: 176 GFLFVVSFLGLFSVVPLRKVMIIDFKLTYPSGTATAYLINSFHTPEGARLAKKQVRTLGK 235
             L     LG+    PLR+ ++   KL +PSG ATA L+ + HTP G + AK +++    
Sbjct: 110 LLLLSTQLLGVGFAGPLRRFLVYPPKLPFPSGLATAELLKALHTPGGWKEAKSRLKFFLI 169

Query: 236 FFSFSFLWGFF--QWFFTAGDN----CGFVSFPTFGLKAYEYRFYFDFSAIYVGVGMICP 289
            F  SF++ +F    F              S PTFGL      F FD+SAI +G G+I P
Sbjct: 170 GFVASFVYYWFPFYIFPALSSFSWVCWIAPSNPTFGLLFGGLGFTFDWSAILLGSGLIVP 229

Query: 290 YIINISVLLGGILSWGLMWPLIEKRKGDWYSADLSP---------TSLQGLQGYKVFISI 340
             + +++L+G +LSWG++ PL+      WY+A L            +  GL  Y  +I  
Sbjct: 230 LWVAVNMLIGAVLSWGIIIPLLYYSGNVWYTAYLPIMSNGLFDNTGTSDGLLDYARYIGY 289

Query: 341 ALILGDGLYN---FCKVLSRTLVGLFYQVRTRNASSDLPVAENSSPETAKLSYDDQRRTR 397
             +L  GLY    F  + +  +  + +  R    +         +    K SYDD  R  
Sbjct: 290 GPMLLSGLYALLFFAAITATIVHSILFHGRDIWQAL-------KASRGPKKSYDDPHRRL 342

Query: 398 LFLKDQIPTWFAISGYVAIAIVSIIVLPHIFH-QLKCYHVLVIYLFAPTLAFCNAYGCGL 456
           +    ++P W+ ++G V   ++ I ++  +F  QL  + +L+  L A   A  +AY  GL
Sbjct: 343 MRKYKEVPMWWYLAGLVLSLVLGIALVAALFPTQLPVWGLLLALLLAFVFAIPSAYIAGL 402

Query: 457 TDWSLASTYGKLAIFTIGAWAGSSHGGVLAGLAACGVMMNIVSTASDLTQDFKTGYLTLA 516
           T  S  S  G L     G          LA L   GV  N  + A D  QD KTG+ T A
Sbjct: 403 TGSSPVSGLGILTELIAGYVLPGR---PLANLIFGGVGYNAAAQAGDFMQDLKTGHYTGA 459

Query: 517 SPRSMFVSQVIGTAIGCIVSPCVFWLFYKAFDDLGVPG--SEYAAPFAMVYRNMAKLGVE 574
            PR+ FV+Q+IGT +G +V+P V  L  +A+   G  G      AP A     +A   + 
Sbjct: 460 PPRAQFVAQLIGTLVGSVVNPGVLNLLNQAYGCTGAQGDSWTCPAPQAFFSAAVAWGVIG 519

Query: 575 GFSA-LPKNCLLLCYVLFGAAIVINLIRDSIRKEWARFIPLPMAMAIPFYLGPYFAIDMC 633
           G    LP   LL  +++   A V++ +     K   R +    A  I  YL P     + 
Sbjct: 520 GKRFGLPYYALLWGFLVGAVAPVLDWLL---HKRLPRSLAFAGAGTIGPYLPPSLTSAIL 576

Query: 634 VGSLLLFIWEKIDKAKADAFGPAVASGLICGDGIWSLPSSILA 676
           VG L  +   +  KA    +   +A+GLI G+ +  +  + L 
Sbjct: 577 VGGLFNYYVRRRRKAWWRKYNYVLAAGLIAGEALMGVIIAFLV 619

The OPT family of oligopeptide transporters is distinct from the ABC pfam00005 and PTR pfam00854 transporter families. OPT transporters were first recognised in fungi (Candida albicans and Schizosaccharomyces pombe), but this alignment also includes orthologues from Arabidopsis thaliana. OPT transporters are thought to have 12-14 transmembrane domains and contain the following motif: SPYxEVRxxVxxxDDP. Length = 619

>gnl\|CDD\|233105 TIGR00728, OPT_sfam, oligopeptide transporter, OPT superfamily	Back alignment and domain information

>gnl\|CDD\|224216 COG1297, COG1297, Predicted membrane protein [Function unknown]	Back alignment and domain information

>gnl\|CDD\|129816 TIGR00733, TIGR00733, putative oligopeptide transporter, OPT family	Back alignment and domain information

>gnl\|CDD\|129810 TIGR00727, ISP4_OPT, small oligopeptide transporter, OPT family	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		703
TIGR00733		591	putative oligopeptide transporter, OPT family. Thi	100.0
PF03169		624	OPT: OPT oligopeptide transporter protein; InterPr	100.0
TIGR00728		654	OPT_sfam oligopeptide transporters, OPT superfamil	100.0
TIGR00727		681	ISP4_OPT small oligopeptide transporter, OPT famil	100.0
KOG2262		761	consensus Sexual differentiation process protein I	100.0
COG1297		624	Predicted membrane protein [Function unknown]	100.0
PF03169		624	OPT: OPT oligopeptide transporter protein; InterPr	96.16
TIGR00733		591	putative oligopeptide transporter, OPT family. Thi	94.13

>TIGR00733 putative oligopeptide transporter, OPT family	Back alignment and domain information

Probab=100.00  E-value=4.7e-100  Score=867.82  Aligned_cols=557  Identities=19%  Similarity=0.284  Sum_probs=437.4

Q ss_pred             cchHHHHHHHHHHHHHHHHhhhccceeeccccchHHHHHHHHHHHHHHHHHhhhhcccCCCCCCccchHHHHHHHhhccc
Q 005295           58 QLTIRAFVVSFVLSVLFTFIVMKLNLTTGIIPSLNVSAGLLGFFFVKTWTKFLENSRILRQPFTRQENTVIQTCVVASSG  137 (703)
Q Consensus        58 ~lT~RavvlG~llg~l~~~~N~y~gLk~G~t~~~si~aalls~~i~k~~~r~l~~~~~~~~pft~~EnnivQT~Asa~~~  137 (703)
                      |+|+|++++|+++|++++++|+|+|||+|||+++|||++++||+++|.++|           +|++|||++||+|||+++
T Consensus         1 elT~Ravi~G~~lg~l~~asn~YlgLk~G~t~~~sI~aAil~~~ilr~~~~-----------~t~~EnnivQT~asA~~~   69 (591)
T TIGR00733         1 EYTVRGFILGALITIIFTAANVYLGLYVGMTFAASIPAAVISMAVLMAFRD-----------RSILENNMVQTAASAAGT   69 (591)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHhcc-----------CChhHHHHHHHHHHHHHH
Confidence            799999999999999999999999999999999999999999999998765           599999999999999998


Q ss_pred             cccccchhhhHHHHHHHhhhhcccccCccccCchhHHHHHHHHHHHHHHhhhcccceeeeecccccccCcchhHHhhhhc
Q 005295          138 IAFSGGFGSYLLGMSDRIALQSEDTNLGYKNLSLTWIIGFLFVVSFLGLFSVVPLRKVMIIDFKLTYPSGTATAYLINSF  217 (703)
Q Consensus       138 ~~~~gg~~~~i~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lGv~faipLRr~lI~~~~L~fP~g~AtA~li~sl  217 (703)
                      ++   ++...+||++.+.         .+.++++++++.|++++|++|++|++||||+||+|+||+||||+||||+|++.
T Consensus        70 ~a---g~~~~lPAl~~lg---------~~~~~~~~~~~~~~~~gg~lGvlf~iPLRr~~I~~~~L~fP~G~A~Ae~l~~g  137 (591)
T TIGR00733        70 LS---SVIFVLPALLMLG---------YWTEFPYWITTVICALGGSLGVLFTIPLRRAFVVESKLPYPEGVACAEVLKAG  137 (591)
T ss_pred             HH---HHHHHHHHHHhcC---------ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHcc
Confidence            86   5778999988753         22346777888999999999999999999999999999999999999999975


Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCccccccccccccccceeeeeeecccccccceecchHHHHHHH
Q 005295          218 HTPEGARLAKKQVRTLGKFFSFSFLWGFFQWFFTAGDNCGFVSFPTFGLKAYEYRFYFDFSAIYVGVGMICPYIINISVL  297 (703)
Q Consensus       218 H~~~g~~~a~~~~~~l~~~f~~s~~~~~~~~~~~~~~~~~~~~~~~~Gl~~~~~~~~~d~Spa~~G~G~ivG~~~~~s~f  297 (703)
                      +  +++  .++|.|.++..+..+.+|.++.-+.....  ....+...|..  .++|++||||+|+|+|||+|++++++||
T Consensus       138 ~--~g~--~~~~~~~l~~g~~~s~~~~~~~~~~~~~~--~~~~~~~~g~~--~~~~~~~~SpalvG~G~ivG~~v~~s~~  209 (591)
T TIGR00733       138 D--KAR--NGTGAKPIAYGGILASIYAFLGSLRVWSG--TLSAAKLVGRR--ALYFGSDLSLALIGVGYLVGLNIGFAMF  209 (591)
T ss_pred             c--ccc--chhhHHHHHHHHHHHHHHHHHHHhccCCc--hHHHHHhcCCc--ceEEEecccHHHHcCceeeChHHHHHHH
Confidence            2  322  34567778888888888877731100000  00000011111  3578899999999999999999999999


Q ss_pred             HHHHHHHhhhhhhhhcccCcccCCCCCccc-hhhhhh-hhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 005295          298 LGGILSWGLMWPLIEKRKGDWYSADLSPTS-LQGLQG-YKVFISIALILGDGLYNFCKVLSRTLVGLFYQVRTRNASSDL  375 (703)
Q Consensus       298 ~G~vl~w~il~P~l~~~~~~w~~~~~~~~~-~~~~~~-y~~~igvg~m~~~g~~~l~~~i~~~~~~i~~~~~~~~~~~~~  375 (703)
                      +|++++|++++|++.++  .|+|++.++++ ...+|+ |.+|+|+++|+++|++++.++++++.+++++.++..+++   
T Consensus       210 ~G~vlaWgvl~P~l~~~--~~~~~~~~~~~~~~~vw~~~vR~iGvg~m~~~gl~~l~~~~~~~~~~~~~~~~~~~~~---  284 (591)
T TIGR00733       210 LGGAIAWGVAIPIYTAK--MGSPGDLSALDLAWTIWSTKVRYIGVGAIVVAALWTLLKLRGPIARGIKAGLEAARRR---  284 (591)
T ss_pred             HHHHHHHHHHHHHHHhc--CCCCCCccHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---
Confidence            99999999999999863  57666554432 134554 457899999999999999999988888888777654321   


Q ss_pred             CcccCCCccccccccchhhhhhhcccCCChhHHHHHHHHHHHHHHHHhhhhhhhhhh-----H----HHHHHHHHHHHHH
Q 005295          376 PVAENSSPETAKLSYDDQRRTRLFLKDQIPTWFAISGYVAIAIVSIIVLPHIFHQLK-----C----YHVLVIYLFAPTL  446 (703)
Q Consensus       376 ~~~~~~~~~~~~~~~d~~~r~~~~~~~~vP~w~~~~~~~~~~~l~~~~~~~~~~~l~-----~----~~~~lai~la~v~  446 (703)
                                  ++.++.+|+    ++|+|.|+...+.++ .++.  +..+.+ +.|     +    ...++++++++++
T Consensus       285 ------------~~~~~~~r~----~~dip~~~v~~~~~~-~~~~--~~~~~~-~~~~~~~~~~~~~~~~~la~vl~f~~  344 (591)
T TIGR00733       285 ------------QAGEAVLRT----EEDLPINIVLTLVAL-FVIP--LADFLL-YAPILHNIGMAIAVMAVLMLIIGFFV  344 (591)
T ss_pred             ------------ccccccccc----cccccHHHHHHHHHH-HHHH--HHHHhc-CCcccchhhHHHHHHHHHHHHHHHHH
Confidence                        011122344    358998875433322 1222  111122 222     2    3445566666666


Q ss_pred             hhcccccccc--ccCccchhhhHHHHHHHHHhc---c-----C-CCchhHHHHHHHHHHHHHHHHHHHhhhhcccchhcC
Q 005295          447 AFCNAYGCGL--TDWSLASTYGKLAIFTIGAWA---G-----S-SHGGVLAGLAACGVMMNIVSTASDLTQDFKTGYLTL  515 (703)
Q Consensus       447 ~~~~~~~~G~--T~~~p~~~~g~isqli~g~~~---g-----~-~~~~~~anL~~~~i~~~~a~qA~d~~qDLKtG~llg  515 (703)
                      +.+.+|++|+  ||.||.++++|++|++++.+.   |     + .++++.+||+.++++|.+++||+|+||||||||++|
T Consensus       345 a~v~g~~~G~iGts~nPvsg~~~~t~l~~a~~~~~~g~~~~~~~~~~~v~~~L~~g~vv~~aa~~AgD~mqDlKtG~LlG  424 (591)
T TIGR00733       345 AAIAGYMAGLVGSSNSPISGIGIMSVLFTALILKGLGLSGTGSQIPELMAATIFTAAVVCTAAAISNDNLQDLKTGYLVG  424 (591)
T ss_pred             HHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHHHHhcCcccCccccchhHHHHHHHHHHHHHHHHHHHHHhHhhHhhhhcC
Confidence            6666788889  888999999999999999997   2     1 157899999999999999999999999999999999


Q ss_pred             CChhhHHHHHHhhhhhhHhhHHHHHHHHHHhhccCCC-----CCCccCCchHHHHHHHHhhhccCCCCCchhhHHHHHHH
Q 005295          516 ASPRSMFVSQVIGTAIGCIVSPCVFWLFYKAFDDLGV-----PGSEYAAPFAMVYRNMAKLGVEGFSALPKNCLLLCYVL  590 (703)
Q Consensus       516 a~Pr~qf~aQiiGtivga~v~~~v~~l~~~ay~~i~~-----p~~~~~aP~a~~~~~~A~~g~~G~~~lp~~~~~~~~~~  590 (703)
                      +|||+||++|++|+++|+++++++|++++++| +++.     |+++|+||||.+|+++++-...  +.+|+.   +..++
T Consensus       425 atPr~Q~~aq~iG~~vg~~v~~~v~~ll~~ay-g~~~~~~~~~~~~l~APqA~l~~ava~gi~~--~~l~~~---~i~~g  498 (591)
T TIGR00733       425 ATPWRQQVALIIGTFVGALVMAPVLNLLIKAY-GIAGTPTAKGENALPAPQAFLMAAVTEGVFT--GTLEWT---MVFIG  498 (591)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccccccCCCccccCCCHHHHHHHHHhhhcC--CCccHH---HHHHH
Confidence            99999999999999999999999999999999 5532     5678999999999999832211  223322   23444


Q ss_pred             HHHHHHHHHHHhhhhhhhhhccchhhhhcccccccchhHHHHHHHHHHHHHHHhccccc------cccchhhhhhhhhhh
Q 005295          591 FGAAIVINLIRDSIRKEWARFIPLPMAMAIPFYLGPYFAIDMCVGSLLLFIWEKIDKAK------ADAFGPAVASGLICG  664 (703)
Q Consensus       591 ~~~~i~~~~l~~~~p~~~~~~ip~~~a~gig~~lp~~~~~~~~iG~l~~~~~~r~~~~~------~~~~g~~vAsGLIaG  664 (703)
                      .++++++.+++++++||++++-++++++|+|||+|++++++|++|++++|+|+|+++++      .+++++++|||||||
T Consensus       499 a~~g~~l~~~~~~~~~~~~~~~~p~lavgig~yLP~~~s~~~~iG~li~~~~~r~~~~~~~~~~~~~~~g~~vASGLIaG  578 (591)
T TIGR00733       499 AGIGIALIIIDEILAKRGSKFRTPVMAVGVGIYLPLSLGVPILLGAFLARILVSRGRKEGESFTDKKRLGVLGAAGLIVG  578 (591)
T ss_pred             HHHHHHHHHHHHHhhhcccccCCchhHHHHHhhcchhHHHHHHHHHHHHHHHHHhcccccchhhhhhceeeEEecHhhcc
Confidence            55677888899888876666644489999999999999999999999999999976532      247899999999999


Q ss_pred             hhhhHHHHHHHH
Q 005295          665 DGIWSLPSSILA  676 (703)
Q Consensus       665 e~l~Gvv~a~l~  676 (703)
                      |||+||++|++.
T Consensus       579 E~l~Gv~~A~~~  590 (591)
T TIGR00733       579 ESLTGVVFAAII  590 (591)
T ss_pred             hHHHHHHHHHHh
Confidence            999999999764

This protein represents a small family of integral membrane proteins from Gram-negative bacteria, a Gram-positive bacteria, and an archaeal species. Members of this family contain 15 to 18 GES predicted transmembrane regions, and this family has extensive homology to a family of yeast tetrapeptide transporters, including isp4 (Schizosaccharomyces pombe) and Opt1 (Candida albicans). EspB, an apparent equivalog from Myxococcus xanthus, shares an operon with a two component system regulatory protein, and is required for the normal timing of sporulation after the aggregation of cells. This is consistent with a role in transporting oligopeptides as signals across the membrane.

>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast	Back alignment and domain information

>TIGR00728 OPT_sfam oligopeptide transporters, OPT superfamily	Back alignment and domain information

>TIGR00727 ISP4_OPT small oligopeptide transporter, OPT family	Back alignment and domain information

>KOG2262 consensus Sexual differentiation process protein ISP4 [Signal transduction mechanisms]	Back alignment and domain information

>COG1297 Predicted membrane protein [Function unknown]	Back alignment and domain information

>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast	Back alignment and domain information

>TIGR00733 putative oligopeptide transporter, OPT family	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		703
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 43.7 bits (102), Expect = 2e-04
 Identities = 88/646 (13%), Positives = 171/646 (26%), Gaps = 212/646 (32%)

Query: 21  HHHHDKKDKNEGEGGKE------AEEFSVERAFDGKEVPSWRKQL--------------- 59
           HHHH   +  E +   +       + F     FD K+V    K +               
Sbjct: 3   HHHHMDFETGEHQYQYKDILSVFEDAF--VDNFDCKDVQDMPKSILSKEEIDHIIMSKDA 60

Query: 60  ---TIRAF----------VVSFVLSVL---FTFIVMKLNLTTGIIPSLNVSAGLLGFFFV 103
              T+R F          V  FV  VL   + F++  +  T    PS+          ++
Sbjct: 61  VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIK-TEQRQPSMMTRM------YI 113

Query: 104 KTWTKFLENSRILRQPF-TRQEN-TVIQTCVV---ASSGIAFSG--GFG-SYLLGMSDRI 155
           +   +   ++++  +   +R +    ++  ++    +  +   G  G G +++       
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALD---- 169

Query: 156 ALQSEDTNLGYKNLSLTWIIGFLFVVSFLGLFSVVPLRKVMIIDFKLTYP-SGTATAYLI 214
              S                   F + +L L +      V+ +  KL Y      T+   
Sbjct: 170 VCLSYKV-----------QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218

Query: 215 NSFHTPEGARLAKKQVRTLGKFFSFSFLWGFFQWFFTAG----DNCGFVSFPTFGLKAYE 270
           +S +        + ++R L                +        N   V        A  
Sbjct: 219 HSSNIKLRIHSIQAELRRL-----------LKSKPYENCLLVLLN---VQNAKA-WNA-- 261

Query: 271 YRFYFDFSAIYVGVGMICPYII---NISVL--LGGILSWGLMWPLIEKRKG--------- 316
               F+ S         C  ++      V   L    +  +   L               
Sbjct: 262 ----FNLS---------CKILLTTRFKQVTDFLSAATTTHI--SLDHHSMTLTPDEVKSL 306

Query: 317 --DWYSADLSPTSL--QGLQGYKVFIS-IALILGDGL-------YNFCKVLSRTLVGLFY 364
              +   D  P  L  + L      +S IA  + DGL       +  C  L+  +     
Sbjct: 307 LLKY--LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII----- 359

Query: 365 QVRTRNASSDLPVAENSSPETAKLSYDDQRRTRLFLKD-QIPT------WFAISGYVAIA 417
                   S L       P   +  +D      +F     IPT      WF +     + 
Sbjct: 360 -------ESSL---NVLEPAEYRKMFDR---LSVFPPSAHIPTILLSLIWFDVIKSDVMV 406

Query: 418 IV---------------SIIVLPHIFHQLKCY-------HVLVIYLFAPTLAFCNAYGCG 455
           +V               S I +P I+ +LK         H  ++  +     F +     
Sbjct: 407 VVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDS-DDLI 465

Query: 456 LTDW------------SLASTYGKLAIFTIG----AWAGSSHGGVLAGLAACGVMMNIVS 499
                                  ++ +F +      +       +   +       N   
Sbjct: 466 PPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRF-------LEQKIRHDSTAWNASG 518

Query: 500 TASDLTQDFKT--GYLTLASPR-SMFVSQVI----GTAIGCIVSPC 538
           +  +  Q  K    Y+    P+    V+ ++          I S  
Sbjct: 519 SILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKY 564

PyMOL of 1vt4

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00