Citrus Sinensis ID: 005323
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 702 | 2.2.26 [Sep-21-2011] | |||||||
| Q42560 | 898 | Aconitate hydratase 1 OS= | no | no | 0.994 | 0.777 | 0.895 | 0.0 | |
| Q6YZX6 | 898 | Putative aconitate hydrat | yes | no | 0.992 | 0.776 | 0.868 | 0.0 | |
| P49608 | 898 | Aconitate hydratase, cyto | N/A | no | 0.994 | 0.777 | 0.869 | 0.0 | |
| Q9SIB9 | 990 | Aconitate hydratase 2, mi | no | no | 0.992 | 0.704 | 0.862 | 0.0 | |
| Q42669 | 764 | Aconitate hydratase (Frag | N/A | no | 0.992 | 0.912 | 0.863 | 0.0 | |
| Q94A28 | 995 | Aconitate hydratase 3, mi | no | no | 0.992 | 0.700 | 0.810 | 0.0 | |
| O04916 | 616 | Aconitate hydratase, cyto | N/A | no | 0.873 | 0.995 | 0.846 | 0.0 | |
| Q54X73 | 894 | Probable cytoplasmic acon | yes | no | 0.992 | 0.779 | 0.628 | 0.0 | |
| P21399 | 889 | Cytoplasmic aconitate hyd | yes | no | 0.984 | 0.777 | 0.605 | 0.0 | |
| Q90875 | 889 | Cytoplasmic aconitate hyd | yes | no | 0.984 | 0.777 | 0.623 | 0.0 |
| >sp|Q42560|ACO1_ARATH Aconitate hydratase 1 OS=Arabidopsis thaliana GN=ACO1 PE=1 SV=2 | Back alignment and function desciption |
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Score = 1312 bits (3395), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 625/698 (89%), Positives = 663/698 (94%)
Query: 1 MLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDG 60
+LYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEA MLGQPMSMVLPGVVGFKL+GKLRDG
Sbjct: 199 LLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEATMLGQPMSMVLPGVVGFKLTGKLRDG 258
Query: 61 VTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDH 120
+TATDLVLTVTQMLRKHGVVG FVEF+GEGM ELSLADRATIANMSPEYGATMGFFPVDH
Sbjct: 259 MTATDLVLTVTQMLRKHGVVGKFVEFHGEGMRELSLADRATIANMSPEYGATMGFFPVDH 318
Query: 121 VTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPK 180
VTLQYL+LTGRSDDTVSMIE+YLRANKMFVDYSEP+S+ VYSS LELNLE+V PCVSGPK
Sbjct: 319 VTLQYLRLTGRSDDTVSMIEAYLRANKMFVDYSEPESKTVYSSCLELNLEDVEPCVSGPK 378
Query: 181 RPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAI 240
RPHDRVPL EMKADWH+CLDNRVGFKGFA+PKE QSK EFNF+GT AQLRHGDVVIAAI
Sbjct: 379 RPHDRVPLKEMKADWHSCLDNRVGFKGFAVPKEAQSKAVEFNFNGTTAQLRHGDVVIAAI 438
Query: 241 TSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHL 300
TSCTNTSNPSVMLGAALVAKKAC+LGLEVKPWIKTSLAPGSGVVTKYL SGLQKYLN L
Sbjct: 439 TSCTNTSNPSVMLGAALVAKKACDLGLEVKPWIKTSLAPGSGVVTKYLAKSGLQKYLNQL 498
Query: 301 GFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASP 360
GF IVGYGCTTCIGNSGDI +AVA+AI +ND+VA+AVLSGNRNFEGRVHPLTRANYLASP
Sbjct: 499 GFSIVGYGCTTCIGNSGDIHEAVASAIVDNDLVASAVLSGNRNFEGRVHPLTRANYLASP 558
Query: 361 PLVVAYALAGSVNIDFETEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYE 420
PLVVAYALAG+V+IDFET+P+G GKDGK+IF RDIWPS++EVA VVQ SVLPDMFKATYE
Sbjct: 559 PLVVAYALAGTVDIDFETQPIGTGKDGKQIFFRDIWPSNKEVAEVVQSSVLPDMFKATYE 618
Query: 421 AITKGNPMWNQLSVPSGTLYAWDPKSTYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDS 480
AITKGN MWNQLSV SGTLY WDPKSTYIHEPPYFK MTMSPPGPHGVK AYCLLNFGDS
Sbjct: 619 AITKGNSMWNQLSVASGTLYEWDPKSTYIHEPPYFKGMTMSPPGPHGVKDAYCLLNFGDS 678
Query: 481 ITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLL 540
ITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIR+VNK L
Sbjct: 679 ITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRIVNKHL 738
Query: 541 NGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVK 600
GEVGPKT+HIPTGEKLSVFDAAM+Y+NEG DT+ILAGAEYGSGSSRDWAAKGPMLLGVK
Sbjct: 739 KGEVGPKTVHIPTGEKLSVFDAAMKYRNEGRDTIILAGAEYGSGSSRDWAAKGPMLLGVK 798
Query: 601 AVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVR 660
AVI+KSFERIHRSNLVGMGIIPLCFK GEDAET GLTG E YTI+LP++VSEI+PGQDV
Sbjct: 799 AVISKSFERIHRSNLVGMGIIPLCFKAGEDAETLGLTGQELYTIELPNNVSEIKPGQDVT 858
Query: 661 VVTDSGKSFTCVIRFDTEVELAYFDHGGILQYVIRNLI 698
VVT++GKSFTC +RFDTEVELAYFDHGGILQYVIRNLI
Sbjct: 859 VVTNNGKSFTCTLRFDTEVELAYFDHGGILQYVIRNLI 896
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Catalyzes the isomerization of citrate to isocitrate via cis-aconitate. Arabidopsis thaliana (taxid: 3702) EC: 4EC: .EC: 2EC: .EC: 1EC: .EC: 3 |
| >sp|Q6YZX6|ACOC_ORYSJ Putative aconitate hydratase, cytoplasmic OS=Oryza sativa subsp. japonica GN=Os08g0191100 PE=3 SV=1 | Back alignment and function description |
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| >sp|P49608|ACOC_CUCMA Aconitate hydratase, cytoplasmic OS=Cucurbita maxima PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9SIB9|ACO2M_ARATH Aconitate hydratase 2, mitochondrial OS=Arabidopsis thaliana GN=ACO2 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q42669|ACOC_CUCMC Aconitate hydratase (Fragment) OS=Cucumis melo var. conomon GN=ACO PE=2 SV=1 | Back alignment and function description |
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| >sp|Q94A28|ACO3M_ARATH Aconitate hydratase 3, mitochondrial OS=Arabidopsis thaliana GN=ACO3 PE=1 SV=3 | Back alignment and function description |
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| >sp|O04916|ACOC_SOLTU Aconitate hydratase, cytoplasmic (Fragment) OS=Solanum tuberosum PE=2 SV=1 | Back alignment and function description |
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| >sp|Q54X73|ACOC_DICDI Probable cytoplasmic aconitate hydratase OS=Dictyostelium discoideum GN=aco1 PE=3 SV=1 | Back alignment and function description |
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| >sp|P21399|ACOC_HUMAN Cytoplasmic aconitate hydratase OS=Homo sapiens GN=ACO1 PE=1 SV=3 | Back alignment and function description |
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| >sp|Q90875|ACOC_CHICK Cytoplasmic aconitate hydratase OS=Gallus gallus GN=ACO1 PE=2 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 702 | ||||||
| 285309965 | 900 | aconitate hydratase 1 [Citrus clementina | 1.0 | 0.78 | 0.998 | 0.0 | |
| 255579588 | 900 | aconitase, putative [Ricinus communis] g | 1.0 | 0.78 | 0.925 | 0.0 | |
| 224117236 | 899 | predicted protein [Populus trichocarpa] | 1.0 | 0.780 | 0.911 | 0.0 | |
| 296084058 | 918 | unnamed protein product [Vitis vinifera] | 0.998 | 0.763 | 0.911 | 0.0 | |
| 225468576 | 900 | PREDICTED: aconitate hydratase 1-like [V | 0.998 | 0.778 | 0.911 | 0.0 | |
| 224133986 | 899 | predicted protein [Populus trichocarpa] | 1.0 | 0.780 | 0.918 | 0.0 | |
| 449434116 | 900 | PREDICTED: aconitate hydratase 1-like [C | 1.0 | 0.78 | 0.894 | 0.0 | |
| 356538327 | 901 | PREDICTED: aconitate hydratase 1-like [G | 1.0 | 0.779 | 0.891 | 0.0 | |
| 356496602 | 901 | PREDICTED: aconitate hydratase 1 [Glycin | 1.0 | 0.779 | 0.890 | 0.0 | |
| 357483921 | 901 | Aconitate hydratase [Medicago truncatula | 1.0 | 0.779 | 0.888 | 0.0 |
| >gi|285309965|emb|CBE71056.1| aconitate hydratase 1 [Citrus clementina] | Back alignment and taxonomy information |
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Score = 1453 bits (3761), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 701/702 (99%), Positives = 702/702 (100%)
Query: 1 MLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDG 60
MLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKL+DG
Sbjct: 199 MLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLQDG 258
Query: 61 VTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDH 120
VTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDH
Sbjct: 259 VTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDH 318
Query: 121 VTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPK 180
VTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPK
Sbjct: 319 VTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPK 378
Query: 181 RPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAI 240
RPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAI
Sbjct: 379 RPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAI 438
Query: 241 TSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHL 300
TSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHL
Sbjct: 439 TSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHL 498
Query: 301 GFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASP 360
GFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASP
Sbjct: 499 GFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASP 558
Query: 361 PLVVAYALAGSVNIDFETEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYE 420
PLVVAYALAGSVNIDFETEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYE
Sbjct: 559 PLVVAYALAGSVNIDFETEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYE 618
Query: 421 AITKGNPMWNQLSVPSGTLYAWDPKSTYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDS 480
AITKGNPMWNQLSVPSGTLYAWDPKSTYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDS
Sbjct: 619 AITKGNPMWNQLSVPSGTLYAWDPKSTYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDS 678
Query: 481 ITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLL 540
ITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLL
Sbjct: 679 ITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLL 738
Query: 541 NGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVK 600
NGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVK
Sbjct: 739 NGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVK 798
Query: 601 AVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVR 660
AVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVR
Sbjct: 799 AVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVR 858
Query: 661 VVTDSGKSFTCVIRFDTEVELAYFDHGGILQYVIRNLINVRQ 702
VVTDSGKSFTCVIRFDTEVELAYFDHGGILQYVIRNLINVRQ
Sbjct: 859 VVTDSGKSFTCVIRFDTEVELAYFDHGGILQYVIRNLINVRQ 900
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Source: Citrus clementina Species: Citrus clementina Genus: Citrus Family: Rutaceae Order: Sapindales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255579588|ref|XP_002530635.1| aconitase, putative [Ricinus communis] gi|223529808|gb|EEF31743.1| aconitase, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|224117236|ref|XP_002331755.1| predicted protein [Populus trichocarpa] gi|222874452|gb|EEF11583.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|296084058|emb|CBI24446.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|225468576|ref|XP_002263337.1| PREDICTED: aconitate hydratase 1-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|224133986|ref|XP_002327728.1| predicted protein [Populus trichocarpa] gi|222836813|gb|EEE75206.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|449434116|ref|XP_004134842.1| PREDICTED: aconitate hydratase 1-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|356538327|ref|XP_003537655.1| PREDICTED: aconitate hydratase 1-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356496602|ref|XP_003517155.1| PREDICTED: aconitate hydratase 1 [Glycine max] | Back alignment and taxonomy information |
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| >gi|357483921|ref|XP_003612247.1| Aconitate hydratase [Medicago truncatula] gi|355513582|gb|AES95205.1| Aconitate hydratase [Medicago truncatula] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q6YZX6 | ACOC_ORYSJ | 4, ., 2, ., 1, ., 3 | 0.8680 | 0.9928 | 0.7761 | yes | no |
| Q6G9K9 | ACON_STAAS | 4, ., 2, ., 1, ., 3 | 0.5479 | 0.9814 | 0.7647 | yes | no |
| P63433 | ACON_STAAM | 4, ., 2, ., 1, ., 3 | 0.5479 | 0.9814 | 0.7647 | yes | no |
| P09339 | ACON_BACSU | 4, ., 2, ., 1, ., 3 | 0.5558 | 0.9800 | 0.7568 | yes | no |
| Q90875 | ACOC_CHICK | 4, ., 2, ., 1, ., 3 | 0.6230 | 0.9843 | 0.7772 | yes | no |
| Q54X73 | ACOC_DICDI | 4, ., 2, ., 1, ., 3 | 0.6285 | 0.9928 | 0.7796 | yes | no |
| Q0VCU1 | ACOC_BOVIN | 4, ., 2, ., 1, ., 3 | 0.6115 | 0.9843 | 0.7772 | yes | no |
| Q68VV0 | ACON_RICTY | 4, ., 2, ., 1, ., 3 | 0.5436 | 0.9629 | 0.7699 | yes | no |
| Q92G90 | ACON_RICCN | 4, ., 2, ., 1, ., 3 | 0.5471 | 0.9643 | 0.7710 | yes | no |
| Q9RTN7 | ACON_DEIRA | 4, ., 2, ., 1, ., 3 | 0.5453 | 0.9900 | 0.7671 | yes | no |
| P99148 | ACON_STAAN | 4, ., 2, ., 1, ., 3 | 0.5479 | 0.9814 | 0.7647 | yes | no |
| P37032 | ACON_LEGPH | 4, ., 2, ., 1, ., 3 | 0.57 | 0.9672 | 0.7620 | yes | no |
| P28271 | ACOC_MOUSE | 4, ., 2, ., 1, ., 3 | 0.6172 | 0.9843 | 0.7772 | yes | no |
| Q9I3F5 | ACON1_PSEAE | 4, ., 2, ., 1, ., 3 | 0.5553 | 0.9829 | 0.7582 | yes | no |
| Q6GH55 | ACON_STAAR | 4, ., 2, ., 1, ., 3 | 0.5493 | 0.9814 | 0.7647 | yes | no |
| Q2A1K3 | ACON_FRATH | 4, ., 2, ., 1, ., 3 | 0.5391 | 0.9814 | 0.7353 | yes | no |
| Q42669 | ACOC_CUCMC | 4, ., 2, ., 1, ., 3 | 0.8638 | 0.9928 | 0.9123 | N/A | no |
| Q5HPJ0 | ACON_STAEQ | 4, ., 2, ., 1, ., 3 | 0.5507 | 0.9814 | 0.7647 | yes | no |
| Q01059 | ACOC_RABIT | 4, ., 2, ., 1, ., 3 | 0.6158 | 0.9843 | 0.7772 | yes | no |
| Q4UK20 | ACON_RICFE | 4, ., 2, ., 1, ., 3 | 0.5477 | 0.9658 | 0.7722 | yes | no |
| P63434 | ACON_STAAW | 4, ., 2, ., 1, ., 3 | 0.5479 | 0.9814 | 0.7647 | yes | no |
| Q9ZCF4 | ACON_RICPR | 4, ., 2, ., 1, ., 3 | 0.5398 | 0.9586 | 0.7665 | yes | no |
| P21399 | ACOC_HUMAN | 4, ., 2, ., 1, ., 3 | 0.6057 | 0.9843 | 0.7772 | yes | no |
| Q8CPC2 | ACON_STAES | 4, ., 2, ., 1, ., 3 | 0.5507 | 0.9814 | 0.7647 | yes | no |
| Q63270 | ACOC_RAT | 4, ., 2, ., 1, ., 3 | 0.6143 | 0.9843 | 0.7772 | yes | no |
| P49608 | ACOC_CUCMA | 4, ., 2, ., 1, ., 3 | 0.8696 | 0.9943 | 0.7772 | N/A | no |
| A0QX20 | ACON_MYCS2 | 4, ., 2, ., 1, ., 3 | 0.5147 | 0.9814 | 0.7306 | yes | no |
| Q1RKD5 | ACON_RICBR | 4, ., 2, ., 1, ., 3 | 0.5406 | 0.9729 | 0.7717 | yes | no |
| P70920 | ACON_BRAJA | 4, ., 2, ., 1, ., 3 | 0.5411 | 0.9729 | 0.7538 | yes | no |
| Q59938 | ACON_STRMU | 4, ., 2, ., 1, ., 3 | 0.5221 | 0.9857 | 0.7792 | yes | no |
| Q23500 | ACOC_CAEEL | 4, ., 2, ., 1, ., 3 | 0.6008 | 0.9886 | 0.7824 | yes | no |
| Q6NH63 | ACON_CORDI | 4, ., 2, ., 1, ., 3 | 0.5107 | 0.9857 | 0.7408 | yes | no |
| O04916 | ACOC_SOLTU | 4, ., 2, ., 1, ., 3 | 0.8466 | 0.8732 | 0.9951 | N/A | no |
| Q4JVM4 | ACON_CORJK | 4, ., 2, ., 1, ., 3 | 0.5080 | 0.9871 | 0.7403 | yes | no |
| Q5HG69 | ACON_STAAC | 4, ., 2, ., 1, ., 3 | 0.5479 | 0.9814 | 0.7647 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 4.2.1 | 0.976 |
| 3rd Layer | 4.2.1.3 | 0.991 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 702 | |||
| PLN00070 | 936 | PLN00070, PLN00070, aconitate hydratase | 0.0 | |
| PTZ00092 | 898 | PTZ00092, PTZ00092, aconitate hydratase-like prote | 0.0 | |
| PRK09277 | 888 | PRK09277, PRK09277, aconitate hydratase; Validated | 0.0 | |
| TIGR01341 | 876 | TIGR01341, aconitase_1, aconitate hydratase 1 | 0.0 | |
| PRK12881 | 889 | PRK12881, acnA, aconitate hydratase; Provisional | 0.0 | |
| COG1048 | 861 | COG1048, AcnA, Aconitase A [Energy production and | 0.0 | |
| TIGR02333 | 858 | TIGR02333, 2met_isocit_dHY, 2-methylisocitrate deh | 0.0 | |
| cd01586 | 404 | cd01586, AcnA_IRP, Aconitase A catalytic domain | 0.0 | |
| pfam00330 | 464 | pfam00330, Aconitase, Aconitase family (aconitate | 1e-126 | |
| cd01580 | 171 | cd01580, AcnA_IRP_Swivel, Aconitase A swivel domai | 1e-112 | |
| cd01351 | 389 | cd01351, Aconitase, Aconitase catalytic domain; Ac | 7e-77 | |
| TIGR01342 | 658 | TIGR01342, acon_putative, aconitate hydratase, put | 1e-62 | |
| TIGR01340 | 745 | TIGR01340, aconitase_mito, aconitate hydratase, mi | 6e-62 | |
| pfam00694 | 131 | pfam00694, Aconitase_C, Aconitase C-terminal domai | 3e-58 | |
| PRK07229 | 646 | PRK07229, PRK07229, aconitate hydratase; Validated | 8e-48 | |
| cd01584 | 412 | cd01584, AcnA_Mitochondrial, Aconitase catalyzes t | 2e-47 | |
| cd01585 | 380 | cd01585, AcnA_Bact, Aconitase catalyzes the revers | 2e-45 | |
| cd01583 | 382 | cd01583, IPMI, 3-isopropylmalate dehydratase catal | 2e-40 | |
| COG0065 | 423 | COG0065, LeuC, 3-isopropylmalate dehydratase large | 1e-35 | |
| TIGR02083 | 419 | TIGR02083, LEU2, 3-isopropylmalate dehydratase, la | 2e-30 | |
| PRK00402 | 418 | PRK00402, PRK00402, 3-isopropylmalate dehydratase | 2e-28 | |
| TIGR00170 | 465 | TIGR00170, leuC, 3-isopropylmalate dehydratase, la | 3e-28 | |
| TIGR02086 | 412 | TIGR02086, IPMI_arch, 3-isopropylmalate dehydratas | 2e-27 | |
| PRK12466 | 471 | PRK12466, PRK12466, isopropylmalate isomerase larg | 3e-26 | |
| PRK07229 | 646 | PRK07229, PRK07229, aconitate hydratase; Validated | 7e-24 | |
| TIGR01343 | 412 | TIGR01343, hacA_fam, homoaconitate hydratase famil | 9e-23 | |
| cd01582 | 363 | cd01582, Homoaconitase, Homoaconitase and other un | 2e-22 | |
| TIGR00139 | 712 | TIGR00139, h_aconitase, homoaconitase | 6e-22 | |
| cd01579 | 121 | cd01579, AcnA_Bact_Swivel, Bacterial Aconitase-lik | 3e-21 | |
| cd00404 | 88 | cd00404, Aconitase_swivel, Aconitase swivel domain | 2e-19 | |
| cd01578 | 149 | cd01578, AcnA_Mitochon_Swivel, Mitochondrial aconi | 3e-16 | |
| PRK05478 | 466 | PRK05478, PRK05478, isopropylmalate isomerase larg | 1e-14 | |
| cd01577 | 91 | cd01577, IPMI_Swivel, Aconatase-like swivel domain | 4e-12 | |
| COG0066 | 191 | COG0066, LeuD, 3-isopropylmalate dehydratase small | 3e-10 | |
| TIGR02087 | 154 | TIGR02087, LEUD_arch, 3-isopropylmalate dehydratas | 2e-09 | |
| PRK14023 | 166 | PRK14023, PRK14023, homoaconitate hydratase small | 5e-09 | |
| PRK11413 | 751 | PRK11413, PRK11413, putative hydratase; Provisiona | 8e-09 | |
| PRK00439 | 163 | PRK00439, leuD, 3-isopropylmalate dehydratase smal | 2e-07 | |
| cd01581 | 436 | cd01581, AcnB, Aconitate hydratase B catalyses the | 5e-07 | |
| TIGR00117 | 844 | TIGR00117, acnB, aconitate hydratase 2 | 3e-06 | |
| PRK01641 | 200 | PRK01641, leuD, isopropylmalate isomerase small su | 2e-05 | |
| COG1049 | 852 | COG1049, AcnB, Aconitase B [Energy production and | 2e-05 | |
| PRK05478 | 466 | PRK05478, PRK05478, isopropylmalate isomerase larg | 5e-05 | |
| PRK09238 | 835 | PRK09238, PRK09238, bifunctional aconitate hydrata | 2e-04 | |
| TIGR02084 | 156 | TIGR02084, leud, 3-isopropylmalate dehydratase, sm | 2e-04 | |
| PLN00072 | 246 | PLN00072, PLN00072, 3-isopropylmalate isomerase/de | 0.002 | |
| PLN00094 | 938 | PLN00094, PLN00094, aconitate hydratase 2; Provisi | 0.003 |
| >gnl|CDD|215047 PLN00070, PLN00070, aconitate hydratase | Back alignment and domain information |
|---|
Score = 1570 bits (4068), Expect = 0.0
Identities = 633/699 (90%), Positives = 672/699 (96%)
Query: 1 MLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDG 60
+LYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDG
Sbjct: 237 ILYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDG 296
Query: 61 VTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDH 120
VTATDLVLTVTQMLRKHGVVG FVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDH
Sbjct: 297 VTATDLVLTVTQMLRKHGVVGKFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDH 356
Query: 121 VTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPK 180
VTLQYLKLTGRSD+TV+MIE+YLRANKMFVDY+EPQ ERVYSSYLEL+LE+V PC+SGPK
Sbjct: 357 VTLQYLKLTGRSDETVAMIEAYLRANKMFVDYNEPQQERVYSSYLELDLEDVEPCISGPK 416
Query: 181 RPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAI 240
RPHDRVPL EMKADWH+CLDN+VGFKGFA+PKE QSKVA+F+FHG PA+LRHG VVIAAI
Sbjct: 417 RPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKEAQSKVAKFSFHGQPAELRHGSVVIAAI 476
Query: 241 TSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHL 300
TSCTNTSNPSVMLGA LVAKKACELGLEVKPWIKTSLAPGSGVVTKYL SGLQKYLN
Sbjct: 477 TSCTNTSNPSVMLGAGLVAKKACELGLEVKPWIKTSLAPGSGVVTKYLLKSGLQKYLNQQ 536
Query: 301 GFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASP 360
GFHIVGYGCTTCIGNSG++D++VA+AITENDIVAAAVLSGNRNFEGRVHPLTRANYLASP
Sbjct: 537 GFHIVGYGCTTCIGNSGELDESVASAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASP 596
Query: 361 PLVVAYALAGSVNIDFETEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYE 420
PLVVAYALAG+V+IDFE EP+G GKDGK +F RDIWPS+EEVA VVQ SVLPDMFK+TYE
Sbjct: 597 PLVVAYALAGTVDIDFEKEPIGTGKDGKDVFFRDIWPSNEEVAEVVQSSVLPDMFKSTYE 656
Query: 421 AITKGNPMWNQLSVPSGTLYAWDPKSTYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDS 480
AITKGNPMWNQLSVPSGTLY+WDPKSTYIHEPPYFK+MTMSPPGPHGVK AYCLLNFGDS
Sbjct: 657 AITKGNPMWNQLSVPSGTLYSWDPKSTYIHEPPYFKNMTMSPPGPHGVKDAYCLLNFGDS 716
Query: 481 ITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLL 540
ITTDHISPAGSIHKDSPAAKYLMERGVDR+DFNSYGSRRGNDEIMARGTFANIR+VNKLL
Sbjct: 717 ITTDHISPAGSIHKDSPAAKYLMERGVDRKDFNSYGSRRGNDEIMARGTFANIRIVNKLL 776
Query: 541 NGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVK 600
GEVGPKT+HIPTGEKLSVFDAAM+YK+EGHDT+ILAGAEYGSGSSRDWAAKGPMLLGVK
Sbjct: 777 KGEVGPKTVHIPTGEKLSVFDAAMKYKSEGHDTIILAGAEYGSGSSRDWAAKGPMLLGVK 836
Query: 601 AVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVR 660
AVIAKSFERIHRSNLVGMGIIPLCFK GEDA+T GLTGHERYTIDLPS++SEI+PGQDV
Sbjct: 837 AVIAKSFERIHRSNLVGMGIIPLCFKSGEDADTLGLTGHERYTIDLPSNISEIKPGQDVT 896
Query: 661 VVTDSGKSFTCVIRFDTEVELAYFDHGGILQYVIRNLIN 699
V TD+GKSFTC +RFDTEVELAYFDHGGIL YVIRNLI
Sbjct: 897 VTTDNGKSFTCTLRFDTEVELAYFDHGGILPYVIRNLIK 935
|
Length = 936 |
| >gnl|CDD|240263 PTZ00092, PTZ00092, aconitate hydratase-like protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|236445 PRK09277, PRK09277, aconitate hydratase; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|233363 TIGR01341, aconitase_1, aconitate hydratase 1 | Back alignment and domain information |
|---|
| >gnl|CDD|237246 PRK12881, acnA, aconitate hydratase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|223977 COG1048, AcnA, Aconitase A [Energy production and conversion] | Back alignment and domain information |
|---|
| >gnl|CDD|131386 TIGR02333, 2met_isocit_dHY, 2-methylisocitrate dehydratase, Fe/S-dependent | Back alignment and domain information |
|---|
| >gnl|CDD|153136 cd01586, AcnA_IRP, Aconitase A catalytic domain | Back alignment and domain information |
|---|
| >gnl|CDD|215861 pfam00330, Aconitase, Aconitase family (aconitate hydratase) | Back alignment and domain information |
|---|
| >gnl|CDD|238812 cd01580, AcnA_IRP_Swivel, Aconitase A swivel domain | Back alignment and domain information |
|---|
| >gnl|CDD|153129 cd01351, Aconitase, Aconitase catalytic domain; Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle | Back alignment and domain information |
|---|
| >gnl|CDD|130409 TIGR01342, acon_putative, aconitate hydratase, putative, Aquifex type | Back alignment and domain information |
|---|
| >gnl|CDD|233362 TIGR01340, aconitase_mito, aconitate hydratase, mitochondrial | Back alignment and domain information |
|---|
| >gnl|CDD|201399 pfam00694, Aconitase_C, Aconitase C-terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|235974 PRK07229, PRK07229, aconitate hydratase; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|153134 cd01584, AcnA_Mitochondrial, Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle | Back alignment and domain information |
|---|
| >gnl|CDD|153135 cd01585, AcnA_Bact, Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle | Back alignment and domain information |
|---|
| >gnl|CDD|153133 cd01583, IPMI, 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate | Back alignment and domain information |
|---|
| >gnl|CDD|223143 COG0065, LeuC, 3-isopropylmalate dehydratase large subunit [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >gnl|CDD|131138 TIGR02083, LEU2, 3-isopropylmalate dehydratase, large subunit | Back alignment and domain information |
|---|
| >gnl|CDD|234748 PRK00402, PRK00402, 3-isopropylmalate dehydratase large subunit; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|232854 TIGR00170, leuC, 3-isopropylmalate dehydratase, large subunit | Back alignment and domain information |
|---|
| >gnl|CDD|233715 TIGR02086, IPMI_arch, 3-isopropylmalate dehydratase, large subunit | Back alignment and domain information |
|---|
| >gnl|CDD|183543 PRK12466, PRK12466, isopropylmalate isomerase large subunit; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|235974 PRK07229, PRK07229, aconitate hydratase; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|130410 TIGR01343, hacA_fam, homoaconitate hydratase family protein | Back alignment and domain information |
|---|
| >gnl|CDD|153132 cd01582, Homoaconitase, Homoaconitase and other uncharacterized proteins of the Aconitase family | Back alignment and domain information |
|---|
| >gnl|CDD|129245 TIGR00139, h_aconitase, homoaconitase | Back alignment and domain information |
|---|
| >gnl|CDD|238811 cd01579, AcnA_Bact_Swivel, Bacterial Aconitase-like swivel domain | Back alignment and domain information |
|---|
| >gnl|CDD|238236 cd00404, Aconitase_swivel, Aconitase swivel domain | Back alignment and domain information |
|---|
| >gnl|CDD|238810 cd01578, AcnA_Mitochon_Swivel, Mitochondrial aconitase A swivel domain | Back alignment and domain information |
|---|
| >gnl|CDD|235490 PRK05478, PRK05478, isopropylmalate isomerase large subunit; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|238809 cd01577, IPMI_Swivel, Aconatase-like swivel domain of 3-isopropylmalate dehydratase and related uncharacterized proteins | Back alignment and domain information |
|---|
| >gnl|CDD|223144 COG0066, LeuD, 3-isopropylmalate dehydratase small subunit [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >gnl|CDD|233716 TIGR02087, LEUD_arch, 3-isopropylmalate dehydratase, small subunit | Back alignment and domain information |
|---|
| >gnl|CDD|184460 PRK14023, PRK14023, homoaconitate hydratase small subunit; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|183125 PRK11413, PRK11413, putative hydratase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|234762 PRK00439, leuD, 3-isopropylmalate dehydratase small subunit; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|153131 cd01581, AcnB, Aconitate hydratase B catalyses the formation of cis-aconitate from citrate as part of the TCA cycle | Back alignment and domain information |
|---|
| >gnl|CDD|129223 TIGR00117, acnB, aconitate hydratase 2 | Back alignment and domain information |
|---|
| >gnl|CDD|179314 PRK01641, leuD, isopropylmalate isomerase small subunit; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|223978 COG1049, AcnB, Aconitase B [Energy production and conversion] | Back alignment and domain information |
|---|
| >gnl|CDD|235490 PRK05478, PRK05478, isopropylmalate isomerase large subunit; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|236424 PRK09238, PRK09238, bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|131139 TIGR02084, leud, 3-isopropylmalate dehydratase, small subunit | Back alignment and domain information |
|---|
| >gnl|CDD|177701 PLN00072, PLN00072, 3-isopropylmalate isomerase/dehydratase small subunit; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|215053 PLN00094, PLN00094, aconitate hydratase 2; Provisional | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 702 | |||
| PLN00070 | 936 | aconitate hydratase | 100.0 | |
| PTZ00092 | 898 | aconitate hydratase-like protein; Provisional | 100.0 | |
| KOG0452 | 892 | consensus RNA-binding translational regulator IRP | 100.0 | |
| TIGR01341 | 876 | aconitase_1 aconitate hydratase 1. This model repr | 100.0 | |
| PRK12881 | 889 | acnA aconitate hydratase; Provisional | 100.0 | |
| PRK09277 | 888 | aconitate hydratase; Validated | 100.0 | |
| TIGR02333 | 858 | 2met_isocit_dHY 2-methylisocitrate dehydratase, Fe | 100.0 | |
| COG1048 | 861 | AcnA Aconitase A [Energy production and conversion | 100.0 | |
| TIGR01340 | 745 | aconitase_mito aconitate hydratase, mitochondrial. | 100.0 | |
| PRK07229 | 646 | aconitate hydratase; Validated | 100.0 | |
| TIGR01342 | 658 | acon_putative aconitate hydratase, putative, Aquif | 100.0 | |
| TIGR00139 | 712 | h_aconitase homoaconitase. Homoaconitase, aconitas | 100.0 | |
| PRK11413 | 751 | putative hydratase; Provisional | 100.0 | |
| KOG0453 | 778 | consensus Aconitase/homoaconitase (aconitase super | 100.0 | |
| TIGR00170 | 465 | leuC 3-isopropylmalate dehydratase, large subunit. | 100.0 | |
| PRK05478 | 466 | isopropylmalate isomerase large subunit; Validated | 100.0 | |
| PRK12466 | 471 | isopropylmalate isomerase large subunit; Provision | 100.0 | |
| cd01583 | 382 | IPMI 3-isopropylmalate dehydratase catalyzes the i | 100.0 | |
| cd01584 | 412 | AcnA_Mitochondrial Aconitase catalyzes the reversi | 100.0 | |
| cd01585 | 380 | AcnA_Bact Aconitase catalyzes the reversible isome | 100.0 | |
| PF00330 | 465 | Aconitase: Aconitase family (aconitate hydratase); | 100.0 | |
| TIGR01343 | 412 | hacA_fam homoaconitate hydratase family protein. T | 100.0 | |
| COG0065 | 423 | LeuC 3-isopropylmalate dehydratase large subunit [ | 100.0 | |
| PRK00402 | 418 | 3-isopropylmalate dehydratase large subunit; Revie | 100.0 | |
| TIGR02086 | 412 | IPMI_arch 3-isopropylmalate dehydratase, large sub | 100.0 | |
| TIGR02083 | 419 | LEU2 3-isopropylmalate dehydratase, large subunit. | 100.0 | |
| cd01586 | 404 | AcnA_IRP Aconitase A catalytic domain. Aconitase A | 100.0 | |
| cd01582 | 363 | Homoaconitase Homoaconitase and other uncharacteri | 100.0 | |
| cd01581 | 436 | AcnB Aconitate hydratase B catalyses the formation | 100.0 | |
| cd01351 | 389 | Aconitase Aconitase catalytic domain; Aconitase ca | 100.0 | |
| PRK09238 | 835 | bifunctional aconitate hydratase 2/2-methylisocitr | 100.0 | |
| TIGR00117 | 844 | acnB aconitate hydratase 2. Aconitate hydratase (a | 100.0 | |
| PLN00094 | 938 | aconitate hydratase 2; Provisional | 100.0 | |
| cd01580 | 171 | AcnA_IRP_Swivel Aconitase A swivel domain. This is | 100.0 | |
| KOG0454 | 502 | consensus 3-isopropylmalate dehydratase (aconitase | 100.0 | |
| COG1049 | 852 | AcnB Aconitase B [Energy production and conversion | 100.0 | |
| COG0066 | 191 | LeuD 3-isopropylmalate dehydratase small subunit [ | 100.0 | |
| cd01578 | 149 | AcnA_Mitochon_Swivel Mitochondrial aconitase A swi | 100.0 | |
| PRK14023 | 166 | homoaconitate hydratase small subunit; Provisional | 100.0 | |
| PRK00439 | 163 | leuD 3-isopropylmalate dehydratase small subunit; | 100.0 | |
| TIGR02087 | 154 | LEUD_arch 3-isopropylmalate dehydratase, small sub | 100.0 | |
| TIGR02084 | 156 | leud 3-isopropylmalate dehydratase, small subunit. | 100.0 | |
| PLN00072 | 246 | 3-isopropylmalate isomerase/dehydratase small subu | 100.0 | |
| TIGR00171 | 188 | leuD 3-isopropylmalate dehydratase, small subunit. | 100.0 | |
| PRK01641 | 200 | leuD isopropylmalate isomerase small subunit; Prov | 100.0 | |
| cd01579 | 121 | AcnA_Bact_Swivel Bacterial Aconitase-like swivel d | 100.0 | |
| PF00694 | 131 | Aconitase_C: Aconitase C-terminal domain CAUTION: | 100.0 | |
| cd01577 | 91 | IPMI_Swivel Aconatase-like swivel domain of 3-isop | 99.97 | |
| PRK09238 | 835 | bifunctional aconitate hydratase 2/2-methylisocitr | 99.96 | |
| cd01674 | 129 | Homoaconitase_Swivel Homoaconitase swivel domain. | 99.96 | |
| cd00404 | 88 | Aconitase_swivel Aconitase swivel domain. Aconitas | 99.96 | |
| TIGR00117 | 844 | acnB aconitate hydratase 2. Aconitate hydratase (a | 99.93 | |
| cd01576 | 131 | AcnB_Swivel Aconitase B swivel domain. Aconitate h | 99.92 | |
| PRK14812 | 119 | hypothetical protein; Provisional | 99.84 | |
| PLN00094 | 938 | aconitate hydratase 2; Provisional | 99.83 | |
| KOG0454 | 502 | consensus 3-isopropylmalate dehydratase (aconitase | 99.83 | |
| PF06434 | 204 | Aconitase_2_N: Aconitate hydratase 2 N-terminus; I | 98.69 | |
| COG1049 | 852 | AcnB Aconitase B [Energy production and conversion | 96.65 | |
| PF04412 | 400 | DUF521: Protein of unknown function (DUF521); Inte | 95.87 | |
| COG1679 | 403 | Predicted aconitase [General function prediction o | 93.9 | |
| cd01355 | 389 | AcnX Putative Aconitase X catalytic domain. Putati | 90.91 |
| >PLN00070 aconitate hydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-210 Score=1800.18 Aligned_cols=700 Identities=90% Similarity=1.433 Sum_probs=671.5
Q ss_pred CCCCCeEEeCCCCcccccccccccccccHHHHHHHHccCceeeecCcEEEEEEeccCCCCCchhhHHHHHHHHHHhcCcc
Q 005323 1 MLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVV 80 (702)
Q Consensus 1 ~~~pdtvvGtDSHT~~~GalG~la~GvGg~d~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtakDviL~i~~~l~~~g~~ 80 (702)
++|||++|||||||||+||||+|||||||+|++++|+|||+||++||||+|+|+|+|++|||||||||+|+++||++|++
T Consensus 237 ~~~PdtlVGtDSHT~~~GglG~lg~GVGg~EaeaaMlgqp~~~~vPevvgV~LtG~L~~GVtAKDliL~i~~~Lr~~Gvv 316 (936)
T PLN00070 237 ILYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVV 316 (936)
T ss_pred cccCCeEEeCCcccCCCCcccccEecccHHHHHHHHhCCeEEeeCCCEEEEEEEeecCCCCCHhHHHHHHHHHhCcCccc
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEecCccCccChhhhhhhhccCcccccccccccCChHHHHHHhhcCCChhHHHHHHHHHHHhhhcccCCCCCCCCc
Q 005323 81 GMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSERV 160 (702)
Q Consensus 81 g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GAt~~~fp~De~t~~YL~~~gr~~~~~~~~e~y~~~~~l~~~~~~~d~~a~ 160 (702)
||||||+|||+++||+++|||||||++|||||+||||+|++|++||+.|||.+++++++++|+|+++||++...+|++|.
T Consensus 317 Gk~VEF~G~Gv~~LSv~dRaTIaNMa~E~GAt~g~FP~De~T~~YL~~tgR~~~~~~~v~~y~k~~~l~~~~~~~D~da~ 396 (936)
T PLN00070 317 GKFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMIEAYLRANKMFVDYNEPQQERV 396 (936)
T ss_pred eEEEEEeCCccccCCHhHHhhHhhcchhhCceeeEecCChHHHHHHHhCCCCHHHHHHHHHHHHhccccccccCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999997556899999
Q ss_pred ccEEEEEecCCcccCccCCCCCCCcccCCccchhhHhhhcccccCCCccCccccccccceeccCCCcccccCCCEEEEEe
Q 005323 161 YSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAI 240 (702)
Q Consensus 161 Y~~vieiDLs~leP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~~~~g~v~ia~I 240 (702)
|+++++||||+|||+||||++|||++||+++.++|.+++..+.+.+|+..+.+++...++++++|++..+++|+|+||||
T Consensus 397 Y~~vieiDLs~veP~VAgP~~P~~~v~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~g~V~ia~I 476 (936)
T PLN00070 397 YSSYLELDLEDVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKEAQSKVAKFSFHGQPAELRHGSVVIAAI 476 (936)
T ss_pred eeEEEEEEcccceEecCCCcChhcCcCHHHhhhhHHHhhcccccccccccchhhhhhhhhhhccCCCCCcccCCEeEEEE
Confidence 99999999999999999999999999999999999988876555444433322223335667899999999999999999
Q ss_pred ecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEeccCCccccCCCCCCc
Q 005323 241 TSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDID 320 (702)
Q Consensus 241 gSCTN~~~~dl~~aA~lla~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gll~~l~~aG~~i~~~gCg~CiG~~g~l~ 320 (702)
||||||||||+|+||++|+|||+++|+||+||||++|+|||++|++||+++||+++|+++||+|++||||+||||++++.
T Consensus 477 gSCTNts~~dl~~aA~lLakkA~~~Glkv~p~Vk~~vaPGS~~V~~~l~~~Gl~~~L~~aGf~v~~~GCg~CIG~~g~l~ 556 (936)
T PLN00070 477 TSCTNTSNPSVMLGAGLVAKKACELGLEVKPWIKTSLAPGSGVVTKYLLKSGLQKYLNQQGFHIVGYGCTTCIGNSGELD 556 (936)
T ss_pred ECCCCCCcHHHHHHHHHHHHHHHhcCCccCCCccEEEeCCCHHHHHHHHHCCcHHHHHHcCCEEcCCccccccCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhhccCceEEEEeeecCCCCCCCCCCccCCccccCHHHHHHHHhcccccccccCCCcccCCCCcccccccCCCChH
Q 005323 321 DAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVNIDFETEPVGVGKDGKKIFLRDIWPSSE 400 (702)
Q Consensus 321 ~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I~~d~~~~pl~~~~~g~~v~l~diwP~~~ 400 (702)
++++++|.+|+++++||||+||||+||||+..+++|||||++||||||+|+|++|+++||+|+++||++|||+||||+.+
T Consensus 557 ~~~~~~i~~~~l~~~~VsS~NRNFeGR~gp~~~~~yLaSP~lVaA~AlaG~i~~d~~~dplg~~~~G~~v~l~diwP~~~ 636 (936)
T PLN00070 557 ESVASAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFEKEPIGTGKDGKDVFFRDIWPSNE 636 (936)
T ss_pred chhhhccccCCeeEEEEeccCCCCCCCCCCCCCceEEcCHHHHHHHHHcCCcccCCCCCCCccCCCCCEecccCCCCChH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhccCchhhHHhhhhccCCCcccccccCCCCCccccCCCcccccCCCCCCCCCCCCCCCCCccceeEEeecCCC
Q 005323 401 EVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPKSTYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDS 480 (702)
Q Consensus 401 ei~~~~~~~~~~~~~~~~y~~~~~~~~~w~~~~~~~~~~~~w~~~s~~i~~pp~~~~~~~~~~~~~~i~~a~~l~~~gdn 480 (702)
||++++.+.++|++|++.|++++.+++.|++++.|++..|+||++||||++||||++++..++.+++|+++|+|+++|||
T Consensus 637 ei~~~~~~~v~~~~f~~~y~~~~~g~~~w~~l~~p~~~~~~wd~~Styi~~pp~f~~~~~~~~~~~~i~~arvL~~lgD~ 716 (936)
T PLN00070 637 EVAEVVQSSVLPDMFKSTYEAITKGNPMWNQLSVPSGTLYSWDPKSTYIHEPPYFKNMTMSPPGPHGVKDAYCLLNFGDS 716 (936)
T ss_pred HHHHHHHccCCHHHhhhhhhhccCCccccccCCCCCCCcccCCCCcceeecCCCCCCcCCCCCCCcCccCcEEEEEECCC
Confidence 99999999999999999999999999999999999999999999999999999999999888888899999999999999
Q ss_pred CCcCccccCCCCCCCChhhhHHHHcCCCccCCccccccCCchhhhccccccchhhhhhhcCCCCCCceeccCCCcccccc
Q 005323 481 ITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPTGEKLSVF 560 (702)
Q Consensus 481 itTD~I~PaG~i~~~s~ag~~L~~~g~~~~~~~~yg~rr~n~evm~r~~F~~~r~~n~~~~g~~~~~t~~~p~g~~~~v~ 560 (702)
||||||||||+|+++||||+||+++|+.++|||||||||||||||+||+|+|+|++|+|++|.++++|+|+|+|+.++||
T Consensus 717 iTTDHISPAG~i~~~spag~yL~~~gv~~~dfnsygsrRgN~evm~rgtFaNir~~N~~~~g~~g~~t~~~p~g~~~~i~ 796 (936)
T PLN00070 717 ITTDHISPAGSIHKDSPAAKYLMERGVDRKDFNSYGSRRGNDEIMARGTFANIRIVNKLLKGEVGPKTVHIPTGEKLSVF 796 (936)
T ss_pred CcccccCCCCCCCCCChHHHHHHhcCCChhhccccccccCcchhhhceeccchhhhhhhcCCCcCCeeEecCCCceeeHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHhhCCceEEEeCCccCCCCCcccccchhhhcCccEEEecchhhHHhhhhccCcccceecCCccchhhccCCCCe
Q 005323 561 DAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHE 640 (702)
Q Consensus 561 ~~a~~y~~~~~~~iiVaG~nfG~GSSRE~Aa~a~~~lGv~aVIA~SFarIf~~Nlin~Gilpl~~~~~~~~~~l~~~~~e 640 (702)
|+|++|+++|+|+|||||+|||||||||||||++++||||||||+||+||||+||+|||||||+|.++++++++.+.+++
T Consensus 797 daA~~Y~~~g~p~iIvaG~nyG~GSSRe~AA~~~~~lGvkaVIA~SF~rIhrsNli~~GiLPL~f~~~~~~~~l~~~g~~ 876 (936)
T PLN00070 797 DAAMKYKSEGHDTIILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKSGEDADTLGLTGHE 876 (936)
T ss_pred HHHHHHHhcCCceEEEccCccCCCCcHHHHHHHHHHhCCcEEEEccHHHHHHhhhhhcCcceEEeCCcccHHHHhcCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988889
Q ss_pred eEEEecCCCcccCCCCceEEEEcCCCeEEEEEEecCCHHHHHHHHhcCHHHHHHHHhhhh
Q 005323 641 RYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHGGILQYVIRNLINV 700 (702)
Q Consensus 641 ~~~idl~~~~~~~~~g~~~~v~~~~g~~~~~~~~~~t~~e~~~~~aGGll~~v~~~~~~~ 700 (702)
.++|+++.....++||++++++..+|++|++.++++|+.|++|+++||+|||++++++++
T Consensus 877 ~~~i~l~~~~~~l~p~~~~~v~~~~g~~~~~~~r~dt~~E~~~~~~GGiL~~v~r~~~~~ 936 (936)
T PLN00070 877 RYTIDLPSNISEIKPGQDVTVTTDNGKSFTCTLRFDTEVELAYFDHGGILPYVIRNLIKQ 936 (936)
T ss_pred eEEEeccccccccCCCCEEEEEeCCCeEEEEEEeCCCHHHHHHHHcCCHHHHHHHHHhhC
Confidence 999998766667899998888777889999999999999999999999999999998753
|
|
| >PTZ00092 aconitate hydratase-like protein; Provisional | Back alignment and domain information |
|---|
| >KOG0452 consensus RNA-binding translational regulator IRP (aconitase superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >TIGR01341 aconitase_1 aconitate hydratase 1 | Back alignment and domain information |
|---|
| >PRK12881 acnA aconitate hydratase; Provisional | Back alignment and domain information |
|---|
| >PRK09277 aconitate hydratase; Validated | Back alignment and domain information |
|---|
| >TIGR02333 2met_isocit_dHY 2-methylisocitrate dehydratase, Fe/S-dependent | Back alignment and domain information |
|---|
| >COG1048 AcnA Aconitase A [Energy production and conversion] | Back alignment and domain information |
|---|
| >TIGR01340 aconitase_mito aconitate hydratase, mitochondrial | Back alignment and domain information |
|---|
| >PRK07229 aconitate hydratase; Validated | Back alignment and domain information |
|---|
| >TIGR01342 acon_putative aconitate hydratase, putative, Aquifex type | Back alignment and domain information |
|---|
| >TIGR00139 h_aconitase homoaconitase | Back alignment and domain information |
|---|
| >PRK11413 putative hydratase; Provisional | Back alignment and domain information |
|---|
| >KOG0453 consensus Aconitase/homoaconitase (aconitase superfamily) [Energy production and conversion; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >TIGR00170 leuC 3-isopropylmalate dehydratase, large subunit | Back alignment and domain information |
|---|
| >PRK05478 isopropylmalate isomerase large subunit; Validated | Back alignment and domain information |
|---|
| >PRK12466 isopropylmalate isomerase large subunit; Provisional | Back alignment and domain information |
|---|
| >cd01583 IPMI 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate | Back alignment and domain information |
|---|
| >cd01584 AcnA_Mitochondrial Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle | Back alignment and domain information |
|---|
| >cd01585 AcnA_Bact Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle | Back alignment and domain information |
|---|
| >PF00330 Aconitase: Aconitase family (aconitate hydratase); InterPro: IPR001030 Aconitase (aconitate hydratase; 4 | Back alignment and domain information |
|---|
| >TIGR01343 hacA_fam homoaconitate hydratase family protein | Back alignment and domain information |
|---|
| >COG0065 LeuC 3-isopropylmalate dehydratase large subunit [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >PRK00402 3-isopropylmalate dehydratase large subunit; Reviewed | Back alignment and domain information |
|---|
| >TIGR02086 IPMI_arch 3-isopropylmalate dehydratase, large subunit | Back alignment and domain information |
|---|
| >TIGR02083 LEU2 3-isopropylmalate dehydratase, large subunit | Back alignment and domain information |
|---|
| >cd01586 AcnA_IRP Aconitase A catalytic domain | Back alignment and domain information |
|---|
| >cd01582 Homoaconitase Homoaconitase and other uncharacterized proteins of the Aconitase family | Back alignment and domain information |
|---|
| >cd01581 AcnB Aconitate hydratase B catalyses the formation of cis-aconitate from citrate as part of the TCA cycle | Back alignment and domain information |
|---|
| >cd01351 Aconitase Aconitase catalytic domain; Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle | Back alignment and domain information |
|---|
| >PRK09238 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated | Back alignment and domain information |
|---|
| >TIGR00117 acnB aconitate hydratase 2 | Back alignment and domain information |
|---|
| >PLN00094 aconitate hydratase 2; Provisional | Back alignment and domain information |
|---|
| >cd01580 AcnA_IRP_Swivel Aconitase A swivel domain | Back alignment and domain information |
|---|
| >KOG0454 consensus 3-isopropylmalate dehydratase (aconitase superfamily) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >COG1049 AcnB Aconitase B [Energy production and conversion] | Back alignment and domain information |
|---|
| >COG0066 LeuD 3-isopropylmalate dehydratase small subunit [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >cd01578 AcnA_Mitochon_Swivel Mitochondrial aconitase A swivel domain | Back alignment and domain information |
|---|
| >PRK14023 homoaconitate hydratase small subunit; Provisional | Back alignment and domain information |
|---|
| >PRK00439 leuD 3-isopropylmalate dehydratase small subunit; Reviewed | Back alignment and domain information |
|---|
| >TIGR02087 LEUD_arch 3-isopropylmalate dehydratase, small subunit | Back alignment and domain information |
|---|
| >TIGR02084 leud 3-isopropylmalate dehydratase, small subunit | Back alignment and domain information |
|---|
| >PLN00072 3-isopropylmalate isomerase/dehydratase small subunit; Provisional | Back alignment and domain information |
|---|
| >TIGR00171 leuD 3-isopropylmalate dehydratase, small subunit | Back alignment and domain information |
|---|
| >PRK01641 leuD isopropylmalate isomerase small subunit; Provisional | Back alignment and domain information |
|---|
| >cd01579 AcnA_Bact_Swivel Bacterial Aconitase-like swivel domain | Back alignment and domain information |
|---|
| >PF00694 Aconitase_C: Aconitase C-terminal domain CAUTION: The Prosite patterns do not match this domain | Back alignment and domain information |
|---|
| >cd01577 IPMI_Swivel Aconatase-like swivel domain of 3-isopropylmalate dehydratase and related uncharacterized proteins | Back alignment and domain information |
|---|
| >PRK09238 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated | Back alignment and domain information |
|---|
| >cd01674 Homoaconitase_Swivel Homoaconitase swivel domain | Back alignment and domain information |
|---|
| >cd00404 Aconitase_swivel Aconitase swivel domain | Back alignment and domain information |
|---|
| >TIGR00117 acnB aconitate hydratase 2 | Back alignment and domain information |
|---|
| >cd01576 AcnB_Swivel Aconitase B swivel domain | Back alignment and domain information |
|---|
| >PRK14812 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PLN00094 aconitate hydratase 2; Provisional | Back alignment and domain information |
|---|
| >KOG0454 consensus 3-isopropylmalate dehydratase (aconitase superfamily) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >PF06434 Aconitase_2_N: Aconitate hydratase 2 N-terminus; InterPro: IPR015929 Aconitase (aconitate hydratase; 4 | Back alignment and domain information |
|---|
| >COG1049 AcnB Aconitase B [Energy production and conversion] | Back alignment and domain information |
|---|
| >PF04412 DUF521: Protein of unknown function (DUF521); InterPro: IPR007506 This is a group of hypothetical proteins | Back alignment and domain information |
|---|
| >COG1679 Predicted aconitase [General function prediction only] | Back alignment and domain information |
|---|
| >cd01355 AcnX Putative Aconitase X catalytic domain | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 702 | ||||
| 3snp_A | 908 | Crystal Structure Analysis Of Iron Regulatory Prote | 0.0 | ||
| 2b3x_A | 888 | Structure Of An Orthorhombic Crystal Form Of Human | 0.0 | ||
| 1aco_A | 754 | Crystal Structure Of Aconitase With Transaconitate | 1e-46 | ||
| 1ami_A | 754 | Steric And Conformational Features Of The Aconitase | 1e-46 | ||
| 1c96_A | 753 | S642a:citrate Complex Of Aconitase Length = 753 | 2e-46 | ||
| 1nis_A | 754 | Crystal Structure Of Aconitase With Trans-Aconitate | 3e-46 | ||
| 5acn_A | 754 | Structure Of Activated Aconitase. Formation Of The | 5e-46 | ||
| 1c97_A | 753 | S642a:isocitrate Complex Of Aconitase Length = 753 | 1e-45 | ||
| 1b0j_A | 754 | Crystal Structure Of Aconitase With Isocitrate Leng | 1e-45 | ||
| 1b0m_A | 753 | Aconitase R644q:fluorocitrate Complex Length = 753 | 2e-45 | ||
| 2pkp_A | 170 | Crystal Structure Of 3-Isopropylmalate Dehydratase | 5e-07 | ||
| 1v7l_A | 163 | Structure Of 3-Isopropylmalate Isomerase Small Subu | 5e-06 |
| >pdb|3SNP|A Chain A, Crystal Structure Analysis Of Iron Regulatory Protein 1 In Complex With Ferritin H Ire Rna Length = 908 | Back alignment and structure |
|
| >pdb|2B3X|A Chain A, Structure Of An Orthorhombic Crystal Form Of Human Cytosolic Aconitase (Irp1) Length = 888 | Back alignment and structure |
| >pdb|1ACO|A Chain A, Crystal Structure Of Aconitase With Transaconitate Bound Length = 754 | Back alignment and structure |
| >pdb|1AMI|A Chain A, Steric And Conformational Features Of The Aconitase Mechanism Length = 754 | Back alignment and structure |
| >pdb|1C96|A Chain A, S642a:citrate Complex Of Aconitase Length = 753 | Back alignment and structure |
| >pdb|1NIS|A Chain A, Crystal Structure Of Aconitase With Trans-Aconitate And Nitrocitrate Bound Length = 754 | Back alignment and structure |
| >pdb|5ACN|A Chain A, Structure Of Activated Aconitase. Formation Of The (4fe-4s) Cluster In The Crystal Length = 754 | Back alignment and structure |
| >pdb|1C97|A Chain A, S642a:isocitrate Complex Of Aconitase Length = 753 | Back alignment and structure |
| >pdb|1B0J|A Chain A, Crystal Structure Of Aconitase With Isocitrate Length = 754 | Back alignment and structure |
| >pdb|1B0M|A Chain A, Aconitase R644q:fluorocitrate Complex Length = 753 | Back alignment and structure |
| >pdb|2PKP|A Chain A, Crystal Structure Of 3-Isopropylmalate Dehydratase (Leud) From Methhanocaldococcus Jannaschii Dsm2661 (Mj1271) Length = 170 | Back alignment and structure |
| >pdb|1V7L|A Chain A, Structure Of 3-Isopropylmalate Isomerase Small Subunit From Pyrococcus Horikoshii Length = 163 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2b3y_A Iron-responsive element binding protein 1; IRP1 IRE-IRP1 aconitase activity, lyase; 1.85A {Homo sapiens} SCOP: c.8.2.1 c.83.1.1 PDB: 2b3x_A 3snp_A 3sn2_A 2ipy_A Length = 888 | Back alignment and structure |
|---|
Score = 1385 bits (3588), Expect = 0.0
Identities = 421/698 (60%), Positives = 537/698 (76%), Gaps = 4/698 (0%)
Query: 1 MLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDG 60
YPDS+VGTDSHTTMIDGLG+ GWGVGGIEAEA MLGQP+SMVLP V+G++L GK
Sbjct: 194 YYYPDSLVGTDSHTTMIDGLGILGWGVGGIEAEAVMLGQPISMVLPQVIGYRLMGKPHPL 253
Query: 61 VTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDH 120
VT+TD+VLT+T+ LR+ GVVG FVEF+G G+++LS+ADRATIANM PEYGAT FFPVD
Sbjct: 254 VTSTDIVLTITKHLRQVGVVGKFVEFFGPGVAQLSIADRATIANMCPEYGATAAFFPVDE 313
Query: 121 VTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPK 180
V++ YL TGR ++ + I+ YL+A MF D+++P + ++ +EL+L+ VVPC SGPK
Sbjct: 314 VSITYLVQTGRDEEKLKYIKKYLQAVGMFRDFNDPSQDPDFTQVVELDLKTVVPCCSGPK 373
Query: 181 RPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAI 240
RP D+V +++MK D+ +CL + GFKGF + E+ + F + T L HG VVIAAI
Sbjct: 374 RPQDKVAVSDMKKDFESCLGAKQGFKGFQVAPEHHNDHKTFIYDNTEFTLAHGSVVIAAI 433
Query: 241 TSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHL 300
TSCTNTSNPSVMLGA L+AKKA + GL V P+IKTSL+PGSGVVT YLQ SG+ YL+ L
Sbjct: 434 TSCTNTSNPSVMLGAGLLAKKAVDAGLNVMPYIKTSLSPGSGVVTYYLQESGVMPYLSQL 493
Query: 301 GFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASP 360
GF +VGYGC TCIGNSG + + V AIT+ D+VA VLSGNRNFEGRVHP TRANYLASP
Sbjct: 494 GFDVVGYGCMTCIGNSGPLPEPVVEAITQGDLVAVGVLSGNRNFEGRVHPNTRANYLASP 553
Query: 361 PLVVAYALAGSVNIDFETEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYE 420
PLV+AYA+AG++ IDFE EP+GV G+++FL+DIWP+ +E+ V ++ V+P MFK Y+
Sbjct: 554 PLVIAYAIAGTIRIDFEKEPLGVNAKGQQVFLKDIWPTRDEIQAVERQYVIPGMFKEVYQ 613
Query: 421 AITKGNPMWNQLSVPSGTLYAWDPKSTYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGDS 480
I N WN L+ PS L+ W+ KSTYI PP+F+++T+ P + AY LLN GDS
Sbjct: 614 KIETVNESWNALATPSDKLFFWNSKSTYIKSPPFFENLTLDLQPPKSIVDAYVLLNLGDS 673
Query: 481 ITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLL 540
+TTDHISPAG+I ++SPAA+YL RG+ R+FNSYGSRRGND +MARGTFANIRL+N+ L
Sbjct: 674 VTTDHISPAGNIARNSPAARYLTNRGLTPREFNSYGSRRGNDAVMARGTFANIRLLNRFL 733
Query: 541 NGEVGPKTIHIPTGEKLSVFDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVK 600
N + P+TIH+P+GE L VFDAA RY+ G ++LAG EYG+GSSRDWAAKGP LLG+K
Sbjct: 734 NKQ-APQTIHLPSGEILDVFDAAERYQQAGLPLIVLAGKEYGAGSSRDWAAKGPFLLGIK 792
Query: 601 AVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGHERYTIDLPSSVSEIRPGQDVR 660
AV+A+S+ERIHRSNLVGMG+IPL + PGE+A+ GLTG ERYTI +P ++P V+
Sbjct: 793 AVLAESYERIHRSNLVGMGVIPLEYLPGENADALGLTGQERYTIIIP---ENLKPQMKVQ 849
Query: 661 VVTDSGKSFTCVIRFDTEVELAYFDHGGILQYVIRNLI 698
V D+GK+F V+RFDT+VEL YF +GGIL Y+IR +
Sbjct: 850 VKLDTGKTFQAVMRFDTDVELTYFLNGGILNYMIRKMA 887
|
| >1c96_A Mitochondrial aconitase; lyase, tricarboxylic acid cycle, iron-sulfur, mitochondrion, transit peptide, 4Fe-4S, 3D-structure; HET: FLC; 1.81A {Bos taurus} SCOP: c.8.2.1 c.83.1.1 PDB: 1c97_A* 1b0k_A* 1b0j_A* 7acn_A* 6acn_A* 5acn_A* 1b0m_A* 1ami_A* 1amj_A 8acn_A* 1fgh_A* 1aco_A* 1nis_A* 1nit_A Length = 753 | Back alignment and structure |
|---|
| >1l5j_A Aconitate hydratase 2; molecular recognition, RNA binding, citric acid cycle, heat- like domain, lyase; HET: TRA; 2.40A {Escherichia coli} SCOP: a.118.15.1 c.8.2.1 c.83.1.1 Length = 865 | Back alignment and structure |
|---|
| >1v7l_A 3-isopropylmalate dehydratase small subunit; beta barrel, lyase; 1.98A {Pyrococcus horikoshii} SCOP: c.8.2.1 Length = 163 | Back alignment and structure |
|---|
| >2pkp_A Homoaconitase small subunit; beta barrel, amino-acid biosynthesis, leucine biosynthesis, structural genomics, NPPSFA; 2.10A {Methanocaldococcus jannaschii} Length = 170 | Back alignment and structure |
|---|
| >2hcu_A 3-isopropylmalate dehydratase small subunit; beta barrel, lyase; 2.10A {Streptococcus mutans} Length = 213 | Back alignment and structure |
|---|
| >3h5j_A 3-isopropylmalate dehydratase small subunit; leucine biosynthesis, isopropylmalate isomerase, LEUD, amino-acid biosynthesis; 1.20A {Mycobacterium tuberculosis} PDB: 3h5h_A 3h5e_A Length = 171 | Back alignment and structure |
|---|
| >3q3w_A 3-isopropylmalate dehydratase small subunit; structural genomics, center for structural genomics of infec diseases, csgid, isomerase; HET: MSE; 1.89A {Campylobacter jejuni} Length = 203 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 702 | |||
| 2b3y_A | 888 | Iron-responsive element binding protein 1; IRP1 IR | 100.0 | |
| 1c96_A | 753 | Mitochondrial aconitase; lyase, tricarboxylic acid | 100.0 | |
| 1l5j_A | 865 | Aconitate hydratase 2; molecular recognition, RNA | 100.0 | |
| 2pkp_A | 170 | Homoaconitase small subunit; beta barrel, amino-ac | 100.0 | |
| 1l5j_A | 865 | Aconitate hydratase 2; molecular recognition, RNA | 100.0 | |
| 1v7l_A | 163 | 3-isopropylmalate dehydratase small subunit; beta | 100.0 | |
| 2hcu_A | 213 | 3-isopropylmalate dehydratase small subunit; beta | 100.0 | |
| 3vba_A | 176 | Isopropylmalate/citramalate isomerase small subun; | 100.0 | |
| 3q3w_A | 203 | 3-isopropylmalate dehydratase small subunit; struc | 100.0 | |
| 3h5j_A | 171 | 3-isopropylmalate dehydratase small subunit; leuci | 100.0 |
| >2b3y_A Iron-responsive element binding protein 1; IRP1 IRE-IRP1 aconitase activity, lyase; 1.85A {Homo sapiens} SCOP: c.8.2.1 c.83.1.1 PDB: 2b3x_A 3snp_A 3sn2_A 2ipy_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-199 Score=1716.13 Aligned_cols=693 Identities=61% Similarity=1.063 Sum_probs=654.9
Q ss_pred CCCCCeEEeCCCCcccccccccccccccHHHHHHHHccCceeeecCcEEEEEEeccCCCCCchhhHHHHHHHHHHhcCcc
Q 005323 1 MLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVV 80 (702)
Q Consensus 1 ~~~pdtvvGtDSHT~~~GalG~la~GvGg~d~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtakDviL~i~~~l~~~g~~ 80 (702)
++||||||||||||||+||||+|||||||+|++++|+||++||++||+|+|+|+|+|++|||||||||+|+++|+++|++
T Consensus 194 ~~~P~tlVGtDSHT~t~GglG~la~GVGg~eae~~mag~~~~~~~PevvgV~ltG~L~~gVtakDviL~i~~~l~~~G~v 273 (888)
T 2b3y_A 194 YYYPDSLVGTDSHTTMIDGLGILGWGVGGIEAEAVMLGQPISMVLPQVIGYRLMGKPHPLVTSTDIVLTITKHLRQVGVV 273 (888)
T ss_dssp EEEECEEEESSGGGGGGGGGTCEEEECCHHHHHHHHTTCCEEEECCCEEEEEEESCCCTTCCHHHHHHHHHHHHHHHCCT
T ss_pred ccccCeEEecCCCccccCcceeEEEccCHHHHHHHHhcCcEeecCCCEEEEEEEccCCCCcchhHHHHHHHHHhccCCcc
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEecCccCccChhhhhhhhccCcccccccccccCChHHHHHHhhcCCChhHHHHHHHHHHHhhhcccCCCCC-CCC
Q 005323 81 GMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQ-SER 159 (702)
Q Consensus 81 g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GAt~~~fp~De~t~~YL~~~gr~~~~~~~~e~y~~~~~l~~~~~~~d-~~a 159 (702)
||+|||+||||++||+++|||||||++|+|||+|+||+|++|++||+.|||++++++++|+|.+++++|+++. +| ++|
T Consensus 274 Gk~vEF~G~gv~~LS~~~R~TI~NMa~E~GAt~g~fp~De~T~~YL~~~gr~~~~~~~~e~y~~a~~l~~~l~-~d~~dA 352 (888)
T 2b3y_A 274 GKFVEFFGPGVAQLSIADRATIANMCPEYGATAAFFPVDEVSITYLVQTGRDEEKLKYIKKYLQAVGMFRDFN-DPSQDP 352 (888)
T ss_dssp TCEEEEESGGGTTSCHHHHHHHHHTHHHHTCSEEECCCCHHHHHHHHHTTCCHHHHHHHHHHHHHHTCCCCTT-CGGGCC
T ss_pred ceEEEEecCccccccccchhhhhhcchhhCCeeEEecCcHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhccC-CCCCCC
Confidence 9999999999999999999999999999999999999999999999999999988999999999999998753 45 899
Q ss_pred cccEEEEEecCCcccCccCCCCCCCcccCCccchhhHhhhcccccCCCccCccccccccceeccCCCcccccCCCEEEEE
Q 005323 160 VYSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAA 239 (702)
Q Consensus 160 ~Y~~vieiDLs~leP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~~~~g~v~ia~ 239 (702)
.|+++++||||+|||+||||++|||++||+++.++|.+++.++.+++|+.-+.+.+.+.+.++|+|+++.|.||+|++||
T Consensus 353 ~Yd~~ieiDLs~leP~VAgP~~P~~~~plse~~~~~~~~l~~~~g~~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~ 432 (888)
T 2b3y_A 353 DFTQVVELDLKTVVPCCSGPKRPQDKVAVSDMKKDFESCLGAKQGFKGFQVAPEHHNDHKTFIYDNTEFTLAHGSVVIAA 432 (888)
T ss_dssp CCSEEEEEEGGGCCSEEECSSCTTCEEEGGGHHHHHHHHHHSCSBTTBCCCCGGGTTCEEEEEETTEEEEEETTBEEEEE
T ss_pred ceEEEEEEEhhheeEeecCCCCcccccChHHhhhhHHHhhhcccccccccccchhhcccceeecCCccccccCCcEEEEE
Confidence 99999999999999999999999999999999999887776544443332111111011346788999999999999999
Q ss_pred eecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEeccCCccccCCCCCC
Q 005323 240 ITSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDI 319 (702)
Q Consensus 240 IgSCTN~~~~dl~~aA~lla~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gll~~l~~aG~~i~~~gCg~CiG~~g~l 319 (702)
|||||||||+|+|+||++|||||+++|+||+||||++|+|||++|++||+++||+++|+++||.|++||||+||||++++
T Consensus 433 IgSCTN~s~~dl~~aA~lLak~A~~kG~kv~p~Vk~~v~PGS~~V~~~l~~~Gl~~~l~~aGf~i~~~GC~~CiG~~~~l 512 (888)
T 2b3y_A 433 ITSCTNTSNPSVMLGAGLLAKKAVDAGLNVMPYIKTSLSPGSGVVTYYLQESGVMPYLSQLGFDVVGYGCMTCIGNSGPL 512 (888)
T ss_dssp ECCHHHHTCHHHHHHHHHHHHHHHHTTCCCCTTSEEEECCSSHHHHHHHHHTSCHHHHHHTTCCBCCSSCGGGGTCCCCC
T ss_pred EecCCCCCcHHHHHHHHHHHHHHHhcCCCCCCCceEEEeCCCHHHHHHHHHcCcHHHHHHcCCEEeCCCCcceeCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHhhhccCceEEEEeeecCCCCCCCCCCccCCccccCHHHHHHHHhcccccccccCCCcccCCCCcccccccCCCCh
Q 005323 320 DDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVNIDFETEPVGVGKDGKKIFLRDIWPSS 399 (702)
Q Consensus 320 ~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I~~d~~~~pl~~~~~g~~v~l~diwP~~ 399 (702)
.++++.+|.+||++++||||+||||+||||+..+++|||||++||||||+|+|++|+++||++.++||++|||+||||+.
T Consensus 513 ~~~~~~~i~~ge~~~~~vsS~NRNFeGR~g~~~~~~yLaSP~lvaA~AiaG~i~~d~~~dpl~~~~~G~~v~l~diwP~~ 592 (888)
T 2b3y_A 513 PEPVVEAITQGDLVAVGVLSGNRNFEGRVHPNTRANYLASPPLVIAYAIAGTIRIDFEKEPLGVNAKGQQVFLKDIWPTR 592 (888)
T ss_dssp CHHHHHHHHHHTCCCEEEESSSCCCTTSSCTTCSEEEECCHHHHHHHHHHCBSCCCTTTSCSEEETTTEEECHHHHCCCH
T ss_pred CchhhhhhccCCeeEEEEeccCCCcCcCCCCCccccEecCHHHHHHHHhcCeeecccccCccccCCCCCcccccccCCch
Confidence 99999999999998889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhccCchhhHHhhhhccCCCcccccccCCCCCccccCCCcccccCCCCCCCCCCCCCCCCCccceeEEeecCC
Q 005323 400 EEVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPSGTLYAWDPKSTYIHEPPYFKDMTMSPPGPHGVKGAYCLLNFGD 479 (702)
Q Consensus 400 ~ei~~~~~~~~~~~~~~~~y~~~~~~~~~w~~~~~~~~~~~~w~~~s~~i~~pp~~~~~~~~~~~~~~i~~a~~l~~~gd 479 (702)
+|+++++.+.+++++|.+.|..++.+++.|+.++.|.++.|+|+++||||++||||++++..+++++++.++|+|+++||
T Consensus 593 ~ei~~~~~~~~~~~~f~~~y~~~~~~~~~~~~~~~~~~~~~~w~~~St~i~~~p~f~~~~~~~~~~~~~~~~~~l~~~gd 672 (888)
T 2b3y_A 593 DEIQAVERQYVIPGMFKEVYQKIETVNESWNALATPSDKLFFWNSKSTYIKSPPFFENLTLDLQPPKSIVDAYVLLNLGD 672 (888)
T ss_dssp HHHHHHHHHHCCHHHHHHHHTTTTTCCHHHHHCCCCCCSSCCCCTTCSSCCCCGGGTTCCSSCCCCCCEEEEEEEEEBCS
T ss_pred hhhHHHHHhcCCHHHhhhhhccccCCccccccCCCCCCCccccCCCcccccCCCCccccccCCCCcccccCcEEEEEecC
Confidence 99999999999999999999999999999999998988999999999999999999999888877889999999999999
Q ss_pred CCCcCccccCCCCCCCChhhhHHHHcCCCccCCccccccCCchhhhccccccchhhhhhhcCCCCCCceeccCCCccccc
Q 005323 480 SITTDHISPAGSIHKDSPAAKYLMERGVDRRDFNSYGSRRGNDEIMARGTFANIRLVNKLLNGEVGPKTIHIPTGEKLSV 559 (702)
Q Consensus 480 nitTD~I~PaG~i~~~s~ag~~L~~~g~~~~~~~~yg~rr~n~evm~r~~F~~~r~~n~~~~g~~~~~t~~~p~g~~~~v 559 (702)
|||||||||||+|+++||||+||+++|+++++|||||+||||||||+|++|+|+|+.|+|.+ .++++|+|+|+|+.+++
T Consensus 673 nitTDhIsPAg~i~~~s~ag~~L~~~gv~~~~f~syg~rRgn~~vm~rg~F~n~r~~n~l~~-~~g~~t~~~p~g~~~~~ 751 (888)
T 2b3y_A 673 SVTTDHISPAGNIARNSPAARYLTNRGLTPREFNSYGSRRGNDAVMARGTFANIRLLNRFLN-KQAPQTIHLPSGEILDV 751 (888)
T ss_dssp CCBHHHHSCCSCCCSSSHHHHHHHHTTCCGGGCCCTGGGTTCHHHHHHTTTCCTTCEETTTT-EECSEEEETTTTEEEEH
T ss_pred CccccccccCccccCCCHHHHHHHhcCCChHHhccccccccCHHHHhhhccccccccccccc-ccCCceeecCCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999986 78999999999999999
Q ss_pred ccHHHHHHhhCCceEEEeCCccCCCCCcccccchhhhcCccEEEecchhhHHhhhhccCcccceecCCccchhhccCCCC
Q 005323 560 FDAAMRYKNEGHDTVILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAETHGLTGH 639 (702)
Q Consensus 560 ~~~a~~y~~~~~~~iiVaG~nfG~GSSRE~Aa~a~~~lGv~aVIA~SFarIf~~Nlin~Gilpl~~~~~~~~~~l~~~~~ 639 (702)
||+|++|+++|.++|||||+|||||||||||+|+++++||+||||+||+||||+||+|||||||+|+++++++.+.+.++
T Consensus 752 ~d~a~~y~~~g~~~iivaG~nfG~GSSREhAa~a~~~~Gi~aVIA~SFarIf~~Nli~~Gllpl~~~~~~~~~~~~~~~~ 831 (888)
T 2b3y_A 752 FDAAERYQQAGLPLIVLAGKEYGAGSSRDWAAKGPFLLGIKAVLAESYERIHRSNLVGMGVIPLEYLPGENADALGLTGQ 831 (888)
T ss_dssp HHHHHHHHHTTCCEEEECCSSBTBSCCCTHHHHHHHHTTEEEEEESCBCHHHHHHHHHHTCEEEEECTTCCHHHHTCCSC
T ss_pred hhhHHHHHhcCCceEEECCCCCCCCccHHHHHHHHHHcCeeEEEEhhHHHHHHhhhhhcCCceEeecccccHHHhccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred eeEEEecCCCcccCCCCceEEEEcCCCeEEEEEEecCCHHHHHHHHhcCHHHHHHHHhh
Q 005323 640 ERYTIDLPSSVSEIRPGQDVRVVTDSGKSFTCVIRFDTEVELAYFDHGGILQYVIRNLI 698 (702)
Q Consensus 640 e~~~idl~~~~~~~~~g~~~~v~~~~g~~~~~~~~~~t~~e~~~~~aGGll~~v~~~~~ 698 (702)
+.++|+|.+ .++||+.+++...+|++|++.++++++.|++|+++||+|||++++++
T Consensus 832 ~~i~i~l~~---~~~~g~~v~v~~~~G~~~~~~~~~~t~~e~~~~~aGGiL~yv~~~~~ 887 (888)
T 2b3y_A 832 ERYTIIIPE---NLKPQMKVQVKLDTGKTFQAVMRFDTDVELTYFLNGGILNYMIRKMA 887 (888)
T ss_dssp SCEEECCCS---SCCTTCEEEEEETTSCEEEEEECCCSHHHHHHHHHTSHHHHHHHHHH
T ss_pred ceEEEEccc---ccCCCcEEEEEeCCCeEEEEEecCCCHHHHHHHHcCCHHHHHHHHhh
Confidence 899999753 48899877764467899999999899999999999999999999986
|
| >1c96_A Mitochondrial aconitase; lyase, tricarboxylic acid cycle, iron-sulfur, mitochondrion, transit peptide, 4Fe-4S, 3D-structure; HET: FLC; 1.81A {Bos taurus} SCOP: c.8.2.1 c.83.1.1 PDB: 1c97_A* 1b0k_A* 1b0j_A* 7acn_A* 6acn_A* 5acn_A* 1b0m_A* 1ami_A* 1amj_A 8acn_A* 1fgh_A* 1aco_A* 1nis_A* 1nit_A | Back alignment and structure |
|---|
| >1l5j_A Aconitate hydratase 2; molecular recognition, RNA binding, citric acid cycle, heat- like domain, lyase; HET: TRA; 2.40A {Escherichia coli} SCOP: a.118.15.1 c.8.2.1 c.83.1.1 | Back alignment and structure |
|---|
| >2pkp_A Homoaconitase small subunit; beta barrel, amino-acid biosynthesis, leucine biosynthesis, structural genomics, NPPSFA; 2.10A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
| >1l5j_A Aconitate hydratase 2; molecular recognition, RNA binding, citric acid cycle, heat- like domain, lyase; HET: TRA; 2.40A {Escherichia coli} SCOP: a.118.15.1 c.8.2.1 c.83.1.1 | Back alignment and structure |
|---|
| >1v7l_A 3-isopropylmalate dehydratase small subunit; beta barrel, lyase; 1.98A {Pyrococcus horikoshii} SCOP: c.8.2.1 | Back alignment and structure |
|---|
| >2hcu_A 3-isopropylmalate dehydratase small subunit; beta barrel, lyase; 2.10A {Streptococcus mutans} | Back alignment and structure |
|---|
| >3vba_A Isopropylmalate/citramalate isomerase small subun; lyase, LEUD, cytosol; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
| >3q3w_A 3-isopropylmalate dehydratase small subunit; structural genomics, center for structural genomics of infec diseases, csgid, isomerase; HET: MSE; 1.89A {Campylobacter jejuni} | Back alignment and structure |
|---|
| >3h5j_A 3-isopropylmalate dehydratase small subunit; leucine biosynthesis, isopropylmalate isomerase, LEUD, amino-acid biosynthesis; 1.20A {Mycobacterium tuberculosis} PDB: 3h5h_A 3h5e_A | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 702 | ||||
| d2b3ya2 | 629 | c.83.1.1 (A:2-630) Iron-responsive element binding | 1e-160 | |
| d2b3ya1 | 259 | c.8.2.1 (A:631-889) ron-responsive element binding | 8e-97 | |
| d1acoa2 | 527 | c.83.1.1 (A:2-528) Aconitase A, N-terminal domain | 3e-87 | |
| d1l5ja3 | 490 | c.83.1.1 (A:373-862) Aconitase B, C-terminal domai | 1e-58 | |
| d1acoa1 | 226 | c.8.2.1 (A:529-754) Aconitase A, C-terminal domain | 3e-54 | |
| d1v7la_ | 162 | c.8.2.1 (A:) Isopropylmalate isomerase LeuD {Pyroc | 2e-24 |
| >d2b3ya2 c.83.1.1 (A:2-630) Iron-responsive element binding protein 1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 629 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Aconitase iron-sulfur domain superfamily: Aconitase iron-sulfur domain family: Aconitase iron-sulfur domain domain: Iron-responsive element binding protein 1, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 474 bits (1222), Expect = e-160
Identities = 263/436 (60%), Positives = 334/436 (76%)
Query: 1 MLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDG 60
YPDS+VGTDSHTTMIDGLG+ GWGVGGIEAEA MLGQP+SMVLP V+G++L GK
Sbjct: 194 YYYPDSLVGTDSHTTMIDGLGILGWGVGGIEAEAVMLGQPISMVLPQVIGYRLMGKPHPL 253
Query: 61 VTATDLVLTVTQMLRKHGVVGMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDH 120
VT+TD+VLT+T+ LR+ GVVG FVEF+G G+++LS+ADRATIANM PEYGAT FFPVD
Sbjct: 254 VTSTDIVLTITKHLRQVGVVGKFVEFFGPGVAQLSIADRATIANMCPEYGATAAFFPVDE 313
Query: 121 VTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSERVYSSYLELNLEEVVPCVSGPK 180
V++ YL TGR ++ + I+ YL+A MF D+++P + ++ +EL+L+ VVPC SGPK
Sbjct: 314 VSITYLVQTGRDEEKLKYIKKYLQAVGMFRDFNDPSQDPDFTQVVELDLKTVVPCCSGPK 373
Query: 181 RPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAI 240
RP D+V +++MK D+ +CL + GFKGF + E+ + F + T L HG VVIAAI
Sbjct: 374 RPQDKVAVSDMKKDFESCLGAKQGFKGFQVAPEHHNDHKTFIYDNTEFTLAHGSVVIAAI 433
Query: 241 TSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHL 300
TSCTNTSNPSVMLGA L+AKKA + GL V P+IKTSL+PGSGVVT YLQ SG+ YL+ L
Sbjct: 434 TSCTNTSNPSVMLGAGLLAKKAVDAGLNVMPYIKTSLSPGSGVVTYYLQESGVMPYLSQL 493
Query: 301 GFHIVGYGCTTCIGNSGDIDDAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASP 360
GF +VGYGC TCIGNSG + + V AIT+ D+VA VLSGNRNFEGRVHP TRANYLASP
Sbjct: 494 GFDVVGYGCMTCIGNSGPLPEPVVEAITQGDLVAVGVLSGNRNFEGRVHPNTRANYLASP 553
Query: 361 PLVVAYALAGSVNIDFETEPVGVGKDGKKIFLRDIWPSSEEVAHVVQKSVLPDMFKATYE 420
PLV+AYA+AG++ IDFE EP+GV G+++FL+DIWP+ +E+ V ++ V+P MFK Y+
Sbjct: 554 PLVIAYAIAGTIRIDFEKEPLGVNAKGQQVFLKDIWPTRDEIQAVERQYVIPGMFKEVYQ 613
Query: 421 AITKGNPMWNQLSVPS 436
I N WN L+ PS
Sbjct: 614 KIETVNESWNALATPS 629
|
| >d2b3ya1 c.8.2.1 (A:631-889) ron-responsive element binding protein 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 259 | Back information, alignment and structure |
|---|
| >d1acoa2 c.83.1.1 (A:2-528) Aconitase A, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]} Length = 527 | Back information, alignment and structure |
|---|
| >d1l5ja3 c.83.1.1 (A:373-862) Aconitase B, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 490 | Back information, alignment and structure |
|---|
| >d1acoa1 c.8.2.1 (A:529-754) Aconitase A, C-terminal domain {Cow (Bos taurus) [TaxId: 9913]} Length = 226 | Back information, alignment and structure |
|---|
| >d1v7la_ c.8.2.1 (A:) Isopropylmalate isomerase LeuD {Pyrococcus horikoshii [TaxId: 53953]} Length = 162 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 702 | |||
| d2b3ya2 | 629 | Iron-responsive element binding protein 1, N-termi | 100.0 | |
| d1acoa2 | 527 | Aconitase A, N-terminal domain {Cow (Bos taurus) [ | 100.0 | |
| d1l5ja3 | 490 | Aconitase B, C-terminal domain {Escherichia coli [ | 100.0 | |
| d2b3ya1 | 259 | ron-responsive element binding protein 1, C-termin | 100.0 | |
| d1acoa1 | 226 | Aconitase A, C-terminal domain {Cow (Bos taurus) [ | 100.0 | |
| d1v7la_ | 162 | Isopropylmalate isomerase LeuD {Pyrococcus horikos | 100.0 | |
| d1l5ja2 | 212 | Aconitase B, second N-terminal domain {Escherichia | 97.62 |
| >d2b3ya2 c.83.1.1 (A:2-630) Iron-responsive element binding protein 1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Aconitase iron-sulfur domain superfamily: Aconitase iron-sulfur domain family: Aconitase iron-sulfur domain domain: Iron-responsive element binding protein 1, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.1e-133 Score=1130.78 Aligned_cols=436 Identities=60% Similarity=1.049 Sum_probs=421.6
Q ss_pred CCCCCeEEeCCCCcccccccccccccccHHHHHHHHccCceeeecCcEEEEEEeccCCCCCchhhHHHHHHHHHHhcCcc
Q 005323 1 MLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATDLVLTVTQMLRKHGVV 80 (702)
Q Consensus 1 ~~~pdtvvGtDSHT~~~GalG~la~GvGg~d~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtakDviL~i~~~l~~~g~~ 80 (702)
++|||+||||||||||+||||+|||||||+|++++|+||++||++||||+|+|+|+|++|||||||||+|+++||++|++
T Consensus 194 ~~~pdtlVGtDSHT~~~GalG~lg~GVGg~Eae~amlg~~~~~~vPevvgv~L~G~L~~gVtakDliL~i~~~L~~~G~v 273 (629)
T d2b3ya2 194 YYYPDSLVGTDSHTTMIDGLGILGWGVGGIEAEAVMLGQPISMVLPQVIGYRLMGKPHPLVTSTDIVLTITKHLRQVGVV 273 (629)
T ss_dssp EEEECEEEESSGGGGGGGGGTCEEEECCHHHHHHHHTTCCEEEECCCEEEEEEESCCCTTCCHHHHHHHHHHHHHHHCCT
T ss_pred eEEeeeEEecCCCccccccccceecCcchHHHHHHHhCCcEEEecCceEEEEEEeccCCCcchhHHHHHHHHHhccCCcc
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEecCccCccChhhhhhhhccCcccccccccccCChHHHHHHhhcCCChhHHHHHHHHHHHhhhcccCCCCCCCCc
Q 005323 81 GMFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVSMIESYLRANKMFVDYSEPQSERV 160 (702)
Q Consensus 81 g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GAt~~~fp~De~t~~YL~~~gr~~~~~~~~e~y~~~~~l~~~~~~~d~~a~ 160 (702)
||+|||+|+|+++||+++|||||||++|||||+||||+|++|++||+.+||++++++++++|.++|++|+++..+|++|.
T Consensus 274 gk~VEF~G~gi~~LS~~dRaTI~NMa~E~GAt~gifp~De~T~~YL~~tgR~~~~~~~ve~y~~a~~l~~~~~~~d~da~ 353 (629)
T d2b3ya2 274 GKFVEFFGPGVAQLSIADRATIANMCPEYGATAAFFPVDEVSITYLVQTGRDEEKLKYIKKYLQAVGMFRDFNDPSQDPD 353 (629)
T ss_dssp TCEEEEESGGGTTSCHHHHHHHHHTHHHHTCSEEECCCCHHHHHHHHHTTCCHHHHHHHHHHHHHHTCCCCTTCGGGCCC
T ss_pred eEEEEeccccccccCHHHhhhhhhcccccCceEEEEccccchhhhhhhhcccccccchhhHHHHHHHhhhhccccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998766788999
Q ss_pred ccEEEEEecCCcccCccCCCCCCCcccCCccchhhHhhhcccccCCCccCccccccccceeccCCCcccccCCCEEEEEe
Q 005323 161 YSSYLELNLEEVVPCVSGPKRPHDRVPLNEMKADWHACLDNRVGFKGFAIPKEYQSKVAEFNFHGTPAQLRHGDVVIAAI 240 (702)
Q Consensus 161 Y~~vieiDLs~leP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~g~~~~~~~g~v~ia~I 240 (702)
|+++++||||+|||+||+|++|||++||+++.++|.+++..+.++.++.++++.+.....+.+++.++.+.|++|++|||
T Consensus 354 Y~~vieiDLs~veP~VAgP~~P~d~v~l~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~V~ia~I 433 (629)
T d2b3ya2 354 FTQVVELDLKTVVPCCSGPKRPQDKVAVSDMKKDFESCLGAKQGFKGFQVAPEHHNDHKTFIYDNTEFTLAHGSVVIAAI 433 (629)
T ss_dssp CSEEEEEEGGGCCSEEECSSCTTCEEEGGGHHHHHHHHHHSCSBTTBCCCCGGGTTCEEEEEETTEEEEEETTBEEEEEE
T ss_pred cceEEEEehhHceeecCCCCCccceeECCccCcChhhhhhhhhhhcccchhhhhhhhhhhhhhccccccccCCcEEEEEE
Confidence 99999999999999999999999999999999999999988877777777655555555667788899999999999999
Q ss_pred ecCCCCCChHHHHHHHHHHHHHHhcCCccCCceeEEEecCCHHHHHHHHHcCcHHHHHhcCcEEeccCCccccCCCCCCc
Q 005323 241 TSCTNTSNPSVMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVTKYLQNSGLQKYLNHLGFHIVGYGCTTCIGNSGDID 320 (702)
Q Consensus 241 gSCTN~~~~dl~~aA~lla~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gll~~l~~aG~~i~~~gCg~CiG~~g~l~ 320 (702)
||||||||||+|+||++|+|||+++|++++||||++|+|||++|++||+++||+++|+++||+|++|||++|+||+|++.
T Consensus 434 gSCTN~s~~dl~~AA~lLa~kaV~~Gl~v~p~Vk~~v~PGS~~V~~~le~~Gl~~~L~~aGf~i~~~GC~~CiGnsGpl~ 513 (629)
T d2b3ya2 434 TSCTNTSNPSVMLGAGLLAKKAVDAGLNVMPYIKTSLSPGSGVVTYYLQESGVMPYLSQLGFDVVGYGCMTCIGNSGPLP 513 (629)
T ss_dssp CCHHHHTCHHHHHHHHHHHHHHHHTTCCCCTTSEEEECCSSHHHHHHHHHTSCHHHHHHTTCCBCCSSCGGGGTCCCCCC
T ss_pred ecCCCCCcHHHHHHHHHHhhhhhhcCCcccceeeEEEeccchhhhHHHHhCCchhhhhhceeEEecccccccCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhhccCceEEEEeeecCCCCCCCCCCccCCccccCHHHHHHHHhcccccccccCCCcccCCCCcccccccCCCChH
Q 005323 321 DAVAAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGSVNIDFETEPVGVGKDGKKIFLRDIWPSSE 400 (702)
Q Consensus 321 ~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I~~d~~~~pl~~~~~g~~v~l~diwP~~~ 400 (702)
++++++|.+|+++++||||+||||+||||+..+++|||||+|||||||+|+|++|+.+||+|+|++|++|||+||||+.+
T Consensus 514 ~~~~~~i~~gdl~~~~V~S~NRNFeGR~g~~~~~~yLaSP~lVaA~AiaG~I~id~~~eplg~~~~G~~V~L~diwPs~~ 593 (629)
T d2b3ya2 514 EPVVEAITQGDLVAVGVLSGNRNFEGRVHPNTRANYLASPPLVIAYAIAGTIRIDFEKEPLGVNAKGQQVFLKDIWPTRD 593 (629)
T ss_dssp HHHHHHHHHHTCCCEEEESSSCCCTTSSCTTCSEEEECCHHHHHHHHHHCBSCCCTTTSCSEEETTTEEECHHHHCCCHH
T ss_pred cchhhhcccCCeeEeeecccCCCCCcCCCCCCCCeEECCHHHHHHHHhceeeecCCCcCCCccCCCCCEEecCCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhccCchhhHHhhhhccCCCcccccccCCC
Q 005323 401 EVAHVVQKSVLPDMFKATYEAITKGNPMWNQLSVPS 436 (702)
Q Consensus 401 ei~~~~~~~~~~~~~~~~y~~~~~~~~~w~~~~~~~ 436 (702)
||++++.+.++|++|++.|+.++.++++|+++++|+
T Consensus 594 Ei~~~~~~~v~~~~f~~~y~~v~~g~~~W~~l~~p~ 629 (629)
T d2b3ya2 594 EIQAVERQYVIPGMFKEVYQKIETVNESWNALATPS 629 (629)
T ss_dssp HHHHHHHHHCCHHHHHHHHTTTTTCCHHHHHCCCCC
T ss_pred HHHHHHHhccChhhhHHHHHHhccCChhhccCCCCC
Confidence 999999999999999999999999999999998773
|
| >d1acoa2 c.83.1.1 (A:2-528) Aconitase A, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
| >d1l5ja3 c.83.1.1 (A:373-862) Aconitase B, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2b3ya1 c.8.2.1 (A:631-889) ron-responsive element binding protein 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1acoa1 c.8.2.1 (A:529-754) Aconitase A, C-terminal domain {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
| >d1v7la_ c.8.2.1 (A:) Isopropylmalate isomerase LeuD {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
| >d1l5ja2 c.8.2.1 (A:161-372) Aconitase B, second N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|