Citrus Sinensis ID: 005352
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 701 | 2.2.26 [Sep-21-2011] | |||||||
| Q9XSC3 | 912 | WD repeat-containing prot | yes | no | 0.452 | 0.347 | 0.333 | 3e-45 | |
| Q6LA54 | 933 | Uncharacterized WD repeat | yes | no | 0.388 | 0.291 | 0.333 | 1e-44 | |
| Q498F0 | 912 | WD repeat-containing prot | N/A | no | 0.445 | 0.342 | 0.325 | 2e-44 | |
| Q6NVE8 | 915 | WD repeat-containing prot | yes | no | 0.339 | 0.260 | 0.361 | 4e-41 | |
| Q5JSH3 | 913 | WD repeat-containing prot | yes | no | 0.339 | 0.260 | 0.361 | 4e-41 | |
| Q9R037 | 908 | WD repeat-containing prot | yes | no | 0.339 | 0.262 | 0.361 | 8e-41 | |
| O60136 | 586 | Uncharacterized WD repeat | no | no | 0.383 | 0.459 | 0.301 | 2e-40 | |
| Q03177 | 834 | WD repeat-containing prot | yes | no | 0.459 | 0.386 | 0.297 | 2e-33 | |
| P32330 | 852 | 2-deoxy-glucose resistant | no | no | 0.516 | 0.424 | 0.263 | 6e-21 | |
| Q8YRI1 | 1526 | Uncharacterized WD repeat | no | no | 0.473 | 0.217 | 0.251 | 9e-18 |
| >sp|Q9XSC3|WDR44_BOVIN WD repeat-containing protein 44 OS=Bos taurus GN=WDR44 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 184 bits (466), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 121/363 (33%), Positives = 193/363 (53%), Gaps = 46/363 (12%)
Query: 249 HDGSILTMKFSPDGQYLASAGDDGVVRLWQV------VEDERLTEVDIPEIDPSCIYFTV 302
H G++ TMKFS G+ LASAG D VVR+W + + R+ + PS
Sbjct: 509 HMGAVWTMKFSHCGRLLASAGQDNVVRIWALKNAFDYFNNMRMKYNTEGRVSPSP----- 563
Query: 303 NHLSELKPLFMDKEKISILKSLRRTSESACVVFPP--KVFRILEKPLHEFHGHSGEILDL 360
+E ++ KS T + P K ++P ++ GH+ ++LDL
Sbjct: 564 -----------SQESLNSSKSDTDTGVCSGTDEDPDDKNAPFRQRPFCKYKGHTADLLDL 612
Query: 361 SWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVR 420
SWSKN +LLS+S+DKTVRLW + CL F H ++VT + F+P DD YF+SGS+DGK+R
Sbjct: 613 SWSKNYFLLSSSMDKTVRLWHISRRECLCCFQHIDFVTAIAFHPRDDRYFLSGSLDGKLR 672
Query: 421 IWAVLSCHVVDWVDI---RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEIC 477
+W + V W ++ +++TA + +G+ ++G+ G C FY+ HL+ +I
Sbjct: 673 LWNIPDKKVALWNEVDGQTKLITAANFCQNGKYAVIGTYDGRCIFYDT--EHLKYHTQIH 730
Query: 478 VHSK--KKAPCKRITGFQFLPQDSSKVMVSCADSQVRI--LQGPNVIGKYKGLRRSGNQL 533
V S + ++ITG + LP + +K++V+ DS++R+ L+ ++ KYKG S +Q+
Sbjct: 731 VRSTRGRNKVGRKITGIEPLPGE-NKILVTSNDSRIRLYDLRDLSLSMKYKGYVNSSSQI 789
Query: 534 SACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKC 593
A F+ D ++VS ED VY+W+ HD +K S+ R + W G+K
Sbjct: 790 KASFSHDFNYLVSGSEDKYVYIWSTY------HDLSK-FTSVRRDRNDF-----WEGIKA 837
Query: 594 GNA 596
NA
Sbjct: 838 HNA 840
|
Downstream effector for RAB11. May be involved in vesicle recycling. Bos taurus (taxid: 9913) |
| >sp|Q6LA54|YF48_SCHPO Uncharacterized WD repeat-containing protein C3H5.08c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC3H5.08c PE=1 SV=2 | Back alignment and function description |
|---|
Score = 182 bits (461), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 105/315 (33%), Positives = 163/315 (51%), Gaps = 43/315 (13%)
Query: 252 SILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELK-P 310
+I MKFS DG+YLA G D ++R+W V++ E V +C N LK P
Sbjct: 318 AIWAMKFSRDGRYLAVGGQDRILRIWAVLDSEHARSV----ASETCSSDPNNPKLNLKAP 373
Query: 311 LFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLS 370
+F E P+ E+ GH+ +ILDLSWS+NN+LLS
Sbjct: 374 VFS------------------------------EAPIREYAGHTADILDLSWSRNNFLLS 403
Query: 371 ASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV 430
+S+DKT RLW CL F HS++VT + F+P DD +F+SGS+D K+R+W++ V
Sbjct: 404 SSMDKTARLWHPVRKDCLCCFEHSDFVTSIAFHPKDDRFFLSGSLDCKLRLWSIKEKAVS 463
Query: 431 DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRIT 490
W ++ +++TAV + PDG I G+ +G C FY+ I K A ++T
Sbjct: 464 FWNELPELITAVAFSPDGGLAIAGTFVGLCLFYDTRGLRFRTQMSIRSSRGKNAKGSKVT 523
Query: 491 GFQFLPQ------DSSKVMVSCADSQVRI--LQGPNVIGKYKGLRRSGNQLSACFTSDGK 542
G Q Q ++++V+ DS++RI L+ ++ K+KG + +Q A F DG
Sbjct: 524 GIQTRTQMIDNIAGDTEMLVTTNDSRIRIYNLRDKSLELKFKGHANAQSQNRAYFDDDGN 583
Query: 543 HIVSAGEDSNVYMWN 557
+++ ED V++W+
Sbjct: 584 YVICGSEDHQVFIWD 598
|
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q498F0|WDR44_XENLA WD repeat-containing protein 44 OS=Xenopus laevis GN=wdr44 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 181 bits (459), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 120/369 (32%), Positives = 194/369 (52%), Gaps = 57/369 (15%)
Query: 249 HDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSEL 308
H G++ TMKFS G+ LASAG D VVR+W + ++ + +
Sbjct: 512 HVGAVWTMKFSHCGRLLASAGQDNVVRIW-------------------VLKNAFDYFNNM 552
Query: 309 KPLFMDKEKIS------ILKSLRRTSESACVVFPPKV--------FRILEKPLHEFHGHS 354
+ + + ++S L S + ++ V FR + P ++ GH+
Sbjct: 553 RIKYNTEGRVSPSPSQESLNSSKSDTDGGVFSGTDDVDPDDKNAPFR--QVPFCKYKGHT 610
Query: 355 GEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGS 414
++LDLSWSKN +LLS+S+DKTVRLW + CL F H ++VT + F+P DD YF+SGS
Sbjct: 611 ADLLDLSWSKNYFLLSSSMDKTVRLWHISRRECLCCFQHIDFVTAIAFHPRDDRYFLSGS 670
Query: 415 IDGKVRIWAVLSCHVVDWVDI---RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLE 471
+DGK+R+W + V W +I +++TA + +G+ ++G+ G C FY+ HL+
Sbjct: 671 LDGKLRLWNIPDKKVALWNEIDGQTKLITAANFCQNGKHAVIGTYDGRCIFYDT--EHLK 728
Query: 472 LDAEICVHSK--KKAPCKRITGFQFLPQDSSKVMVSCADSQVRI--LQGPNVIGKYKGLR 527
+I V S + ++ITG + LP + +K++V+ DS++R+ L+ ++ KYKG
Sbjct: 729 YHTQIHVRSTRGRNRVGRKITGIEPLPGE-NKILVTSNDSRIRLYDLRDLSLSMKYKGCV 787
Query: 528 RSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIP 587
S +Q+ A F+ D +IVS ED VY+W+ HD +K S+ R +
Sbjct: 788 NSSSQIKASFSHDFTYIVSGSEDKYVYIWSTY------HDLSK-FTSVRRDRNDF----- 835
Query: 588 WCGLKCGNA 596
W G+K NA
Sbjct: 836 WEGIKAHNA 844
|
Downstream effector for rab11. May be involved in vesicle recycling. Xenopus laevis (taxid: 8355) |
| >sp|Q6NVE8|WDR44_MOUSE WD repeat-containing protein 44 OS=Mus musculus GN=Wdr44 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 170 bits (430), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 94/260 (36%), Positives = 154/260 (59%), Gaps = 22/260 (8%)
Query: 344 EKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFN 403
++P ++ GH+ ++LDLSWSKN +LLS+S+DKTVRLW + CL F H ++VT + F+
Sbjct: 599 QRPFCKYKGHTADLLDLSWSKNYFLLSSSMDKTVRLWHISRRECLCCFQHIDFVTAIAFH 658
Query: 404 PVDDNYFISGSIDGKVRIWAVLSCHVVDWVDI---RQIVTAVCYRPDGQGGIVGSMMGDC 460
P DD YF+SGS+DGK+R+W + V W ++ +++TA + +G+ ++G+ G C
Sbjct: 659 PRDDRYFLSGSLDGKLRLWNIPDKKVALWNEVDGQTKLITAANFCQNGKYAVIGTYDGRC 718
Query: 461 RFYNVSDNHLELDAEICVHSK--KKAPCKRITGFQFLPQDSSKVMVSCADSQVRI--LQG 516
FY+ HL+ +I V S + ++ITG + LP + +K++V+ DS++R+ L+
Sbjct: 719 IFYDT--EHLKYHTQIHVRSTRGRNKVGRKITGIEPLPGE-NKILVTSNDSRIRLYDLRD 775
Query: 517 PNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLE 576
++ KYKG S +Q+ A F+ D ++VS ED VY+W+ HD +K S+
Sbjct: 776 LSLSMKYKGYVNSSSQIKASFSHDFTYLVSGSEDKYVYIWSTY------HDLSK-FTSVR 828
Query: 577 RFTTNASIAIPWCGLKCGNA 596
R + W G+K NA
Sbjct: 829 RDRNDF-----WEGIKAHNA 843
|
Downstream effector for RAB11. May be involved in vesicle recycling. Mus musculus (taxid: 10090) |
| >sp|Q5JSH3|WDR44_HUMAN WD repeat-containing protein 44 OS=Homo sapiens GN=WDR44 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 170 bits (430), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 94/260 (36%), Positives = 154/260 (59%), Gaps = 22/260 (8%)
Query: 344 EKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFN 403
++P ++ GH+ ++LDLSWSKN +LLS+S+DKTVRLW + CL F H ++VT + F+
Sbjct: 597 QRPFCKYKGHTADLLDLSWSKNYFLLSSSMDKTVRLWHISRRECLCCFQHIDFVTAIAFH 656
Query: 404 PVDDNYFISGSIDGKVRIWAVLSCHVVDWVDI---RQIVTAVCYRPDGQGGIVGSMMGDC 460
P DD YF+SGS+DGK+R+W + V W ++ +++TA + +G+ ++G+ G C
Sbjct: 657 PRDDRYFLSGSLDGKLRLWNIPDKKVALWNEVDGQTKLITAANFCQNGKYAVIGTYDGRC 716
Query: 461 RFYNVSDNHLELDAEICVHSK--KKAPCKRITGFQFLPQDSSKVMVSCADSQVRI--LQG 516
FY+ HL+ +I V S + ++ITG + LP + +K++V+ DS++R+ L+
Sbjct: 717 IFYDT--EHLKYHTQIHVRSTRGRNKVGRKITGIEPLPGE-NKILVTSNDSRIRLYDLRD 773
Query: 517 PNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLE 576
++ KYKG S +Q+ A F+ D ++VS ED VY+W+ HD +K S+
Sbjct: 774 LSLSMKYKGYVNSSSQIKASFSHDFTYLVSGSEDKYVYIWSTY------HDLSK-FTSVR 826
Query: 577 RFTTNASIAIPWCGLKCGNA 596
R + W G+K NA
Sbjct: 827 RDRNDF-----WEGIKAHNA 841
|
Downstream effector for RAB11. May be involved in vesicle recycling. Homo sapiens (taxid: 9606) |
| >sp|Q9R037|WDR44_RAT WD repeat-containing protein 44 OS=Rattus norvegicus GN=Wdr44 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 169 bits (427), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 94/260 (36%), Positives = 154/260 (59%), Gaps = 22/260 (8%)
Query: 344 EKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFN 403
++P ++ GH+ ++LDLSWSKN +LLS+S+DKTVRLW + CL F H ++VT + F+
Sbjct: 592 QRPFCKYKGHTADLLDLSWSKNYFLLSSSMDKTVRLWHISRRECLCCFQHIDFVTAIAFH 651
Query: 404 PVDDNYFISGSIDGKVRIWAVLSCHVVDWVDI---RQIVTAVCYRPDGQGGIVGSMMGDC 460
P DD YF+SGS+DGK+R+W + V W ++ +++TA + +G+ ++G+ G C
Sbjct: 652 PRDDRYFLSGSLDGKLRLWNIPDKKVALWNEVDGQTKLITAANFCQNGKYAVIGTYDGRC 711
Query: 461 RFYNVSDNHLELDAEICVHSK--KKAPCKRITGFQFLPQDSSKVMVSCADSQVRI--LQG 516
FY+ HL+ +I V S + ++ITG + LP + +K++V+ DS++R+ L+
Sbjct: 712 IFYDTE--HLKYHTQIHVRSTRGRNKVGRKITGIEPLPGE-NKILVTSNDSRIRLYDLRD 768
Query: 517 PNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLE 576
++ KYKG S +Q+ A F+ D ++VS ED VY+W+ HD +K S+
Sbjct: 769 LSLSMKYKGYVNSSSQIKASFSHDFTYLVSGSEDKYVYIWSTY------HDLSK-FTSVR 821
Query: 577 RFTTNASIAIPWCGLKCGNA 596
R + W G+K NA
Sbjct: 822 RDRNDF-----WEGIKAHNA 836
|
Downstream effector for RAB11. May be involved in vesicle recycling. Rattus norvegicus (taxid: 10116) |
| >sp|O60136|YNS5_SCHPO Uncharacterized WD repeat-containing protein C18H10.05 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC18H10.05 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 167 bits (423), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 95/315 (30%), Positives = 162/315 (51%), Gaps = 46/315 (14%)
Query: 252 SILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSC-IYFTVNHLSELKP 310
S+ + S G+YLA+AG D ++R+W+V+E E + E SC +FT + + E +P
Sbjct: 188 SVWASEISKSGKYLATAGKDAIIRVWKVIETPERRETLLKEGPQSCGRFFTPSSIFEPEP 247
Query: 311 LFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLS 370
+ CV GH+ E+L +SWSKN++LL+
Sbjct: 248 VL------------------ECV------------------GHNAEVLSISWSKNDFLLT 271
Query: 371 ASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV 430
+S D+TVRLW + L VF H+ VTCV F+P+DD YF+SGS+D K+++W++L ++
Sbjct: 272 SSADRTVRLWHPKSTKSLAVFRHNEIVTCVAFHPIDDRYFVSGSLDCKIQLWSILRHKIL 331
Query: 431 DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRIT 490
W ++ +V+ +C+ PDG+ +VG G C Y + N + + + HS + R+T
Sbjct: 332 HWTELEYVVSTICFYPDGESIVVGMFYGLCAIYE-TKNLQYVSSWLIHHSPSRNKKCRVT 390
Query: 491 GFQ---FLPQDSSK---VMVSCADSQVRILQGPN--VIGKYKGLRRSGNQLSACFTSDGK 542
G Q +P DS V+VS D+ +R+ ++ K R ++ + + D
Sbjct: 391 GLQCASIIPNDSKSDNVVLVSTNDNAIRLYNTVTHALVLKLSDAHRVNGRVLSRLSEDNS 450
Query: 543 HIVSAGEDSNVYMWN 557
+I+S + + V +W+
Sbjct: 451 YIISGSDTNEVVLWH 465
|
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q03177|YMZ2_YEAST WD repeat-containing protein YMR102C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YMR102C PE=1 SV=1 | Back alignment and function description |
|---|
Score = 144 bits (364), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 113/380 (29%), Positives = 192/380 (50%), Gaps = 58/380 (15%)
Query: 225 VKVYHCKKRSKELSALYKGQEIQAHDGSILT---------------MKFSPDGQYLASAG 269
+K+ +K K+ L+ QE+ A++G +T KFS DG+++A+
Sbjct: 133 IKMLKRRKNLKQFRRLFLAQELMAYEGETVTSTSKSSEPTSKAIWSTKFSRDGKFMATGS 192
Query: 270 DDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTS- 328
DG +R+W+V+ + V+ E+D S N + K + + K+++S L + +
Sbjct: 193 KDGKIRIWKVIG----SPVERAELDSSA---ESNKEARAKSMRI-KQQVSSLNNPKEKQF 244
Query: 329 -ESACVVFPPK---------VFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVR 378
+SA + K VF PL + H ++LD++WSKNN++LSAS+DKTV+
Sbjct: 245 LDSATEKYEEKEKLLNLYAPVFH--PTPLRLYKEHVQDVLDINWSKNNFILSASMDKTVK 302
Query: 379 LWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQI 438
LW + L+ F H ++VTCV F+P DD +FISG +D K R+W++L V D + +
Sbjct: 303 LWHPDRKNSLKTFIHPDFVTCVEFHPTDDRFFISGCLDHKCRLWSILDDEVSFEYDCQDL 362
Query: 439 VTAVCYRP-DGQGGIVGSMMGDCRF-----------YNVSDNHL-ELDAEICVHS--KKK 483
+T+V P +G+ I+G+ G ++V+D E +A + V K
Sbjct: 363 ITSVTLSPEEGKYTIIGTFNGYVHILMTRGLTPVSSFHVADRQTQEQNAHVMVTETDSKI 422
Query: 484 APCKRITGFQ-FLPQ--DSSKVMVSCADSQVRI--LQGPNVIGKYKGLRRSGNQLSACFT 538
R+TG Q F Q +S +++V+ DS++RI L+ ++ KG +Q A +
Sbjct: 423 RHGPRVTGLQAFRSQLDNSFRLVVTSNDSRIRIFDLEQRKLLEVLKGFHSGSSQHKAQLS 482
Query: 539 S-DGKHI-VSAGEDSNVYMW 556
G+ I V++ +D VY W
Sbjct: 483 IWHGQPIVVNSSDDHWVYGW 502
|
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|P32330|DGR2_YEAST 2-deoxy-glucose resistant protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DGR2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 103 bits (256), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 114/433 (26%), Positives = 190/433 (43%), Gaps = 71/433 (16%)
Query: 202 KQGEGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHD----GSILTMK 257
K+ EG L + D MF + Q +K+ K S Y+G+ A+ SI
Sbjct: 132 KKKEG----LEQFDRMFLA--QELKIPDVYK-----STTYQGEPAVANSELFKNSICCCT 180
Query: 258 FSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEK 317
FS DG+Y+ DG + LW+V+ + V E+ S + + + LK + +
Sbjct: 181 FSHDGKYMVIGCKDGSLHLWKVIN----SPVKRSEMGRSEKSVSASRANSLK---IQRHL 233
Query: 318 ISILKSLRRTSESACVVFPPKVFRILEKPLH------------EFHGHSGEILDLSWSKN 365
SI S S S+ + P F K LH F H+ +ILD +WSKN
Sbjct: 234 ASI--SSHNGSISSNDLKPSDQFEGPSKQLHLYAPVFYSDVFRVFMEHALDILDANWSKN 291
Query: 366 NYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVL 425
+L++AS+DKT +LW + L+ F H ++VT F P DD + I+G +D + R+W++L
Sbjct: 292 GFLITASMDKTAKLWHPERKYSLKTFVHPDFVTSAIFFPNDDRFIITGCLDHRCRLWSIL 351
Query: 426 SCHVVDWVDIRQIVTAVCYR-PDGQGGIVGSMMG--------DCRF---YNVSDNHLELD 473
V D + ++T++ P G+ I+G+ G +F ++VSD +
Sbjct: 352 DNEVSYAFDCKDLITSLTLSPPGGEYTIIGTFNGYIYVLLTHGLKFVSSFHVSDKSTQGT 411
Query: 474 AEICVHSK----KKAPCKRITGFQ--FLPQDSS-KVMVSCADSQVRI--LQGPNVIGKYK 524
+ H K RITG Q F D + +++V+ DS+++I L + +K
Sbjct: 412 TKNSFHPSSEYGKVQHGPRITGLQCFFSKVDKNLRLIVTTNDSKIQIFDLNEKKPLELFK 471
Query: 525 GLRRSGNQLSACF-TSDGKHIVSAGEDSN-VYMW-----------NCIG-HEEPAHDQAK 570
G + ++ F + +V G D + Y W NC H + +
Sbjct: 472 GFQSGSSRHRGQFLMMKNEPVVFTGSDDHWFYTWKMQSFNLSAEMNCTAPHRKKRLSGSM 531
Query: 571 TIRSLERFTTNAS 583
+++ L R +N S
Sbjct: 532 SLKGLLRIVSNKS 544
|
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 92.8 bits (229), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 100/397 (25%), Positives = 167/397 (42%), Gaps = 65/397 (16%)
Query: 178 AAGKAERVKKRWFSRLRSLACVVDKQGEGERVR---LNEEDAMFCSKV--QRVKVYHCKK 232
A G ++ + W + S C QG VR + + AM S Q V+++
Sbjct: 1006 ATGSGDQTVRLW--DISSSQCFYIFQGHTSCVRSVVFSSDGAMLASGSDDQTVRLWDISS 1063
Query: 233 RSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPE 292
+ LY +Q H + ++ FSPDG LAS GDD +VRLW +
Sbjct: 1064 GN----CLYT---LQGHTSCVRSVVFSPDGAMLASGGDDQIVRLWDISSG---------- 1106
Query: 293 IDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKP-LHEFH 351
+C+Y + S ++ L + +L S V +++ I K L+
Sbjct: 1107 ---NCLYTLQGYTSWVRFLVFSPNGV----TLANGSSDQIV----RLWDISSKKCLYTLQ 1155
Query: 352 GHSGEILDLSWSKNNYLL-SASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNY 409
GH+ + +++S + L S S D+TVRLW + + CL + H+++V V FNP D +
Sbjct: 1156 GHTNWVNAVAFSPDGATLASGSGDQTVRLWDISSSKCLYILQGHTSWVNSVVFNP-DGST 1214
Query: 410 FISGSIDGKVRIWAVLSCHVV-------DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRF 462
SGS D VR+W + S + WV+ +V + PDG GS R
Sbjct: 1215 LASGSSDQTVRLWEINSSKCLCTFQGHTSWVN------SVVFNPDGSMLASGSSDKTVRL 1268
Query: 463 YNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRI--LQGPNVI 520
+++S + C+H+ + + F P D S + D VR+ + +
Sbjct: 1269 WDISSSK-------CLHT-FQGHTNWVNSVAFNP-DGSMLASGSGDQTVRLWEISSSKCL 1319
Query: 521 GKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWN 557
++G + S F+ DG + S +D V +W+
Sbjct: 1320 HTFQG--HTSWVSSVTFSPDGTMLASGSDDQTVRLWS 1354
|
Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 701 | ||||||
| 225455320 | 731 | PREDICTED: uncharacterized protein LOC10 | 0.992 | 0.952 | 0.622 | 0.0 | |
| 255587633 | 714 | WD-repeat protein, putative [Ricinus com | 0.991 | 0.973 | 0.626 | 0.0 | |
| 224132702 | 726 | predicted protein [Populus trichocarpa] | 0.991 | 0.957 | 0.619 | 0.0 | |
| 302143934 | 674 | unnamed protein product [Vitis vinifera] | 0.944 | 0.982 | 0.621 | 0.0 | |
| 224120878 | 654 | predicted protein [Populus trichocarpa] | 0.904 | 0.969 | 0.602 | 0.0 | |
| 356518647 | 701 | PREDICTED: uncharacterized protein LOC10 | 0.977 | 0.977 | 0.591 | 0.0 | |
| 449456415 | 720 | PREDICTED: WD repeat-containing protein | 0.995 | 0.969 | 0.565 | 0.0 | |
| 356507576 | 703 | PREDICTED: uncharacterized protein LOC10 | 0.970 | 0.967 | 0.583 | 0.0 | |
| 357436423 | 784 | WD repeat-containing protein [Medicago t | 0.982 | 0.878 | 0.566 | 0.0 | |
| 225470952 | 753 | PREDICTED: uncharacterized protein LOC10 | 0.997 | 0.928 | 0.532 | 0.0 |
| >gi|225455320|ref|XP_002271917.1| PREDICTED: uncharacterized protein LOC100245187 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 889 bits (2297), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 452/726 (62%), Positives = 549/726 (75%), Gaps = 30/726 (4%)
Query: 5 SEDEECPFFDASEDIASISGATSDS--NDMFDSYYGFNS--------EVWVRTPKSVKER 54
+EDE+ +FDA +D+ + S + S S ND +S GFN+ +VW +P SVKER
Sbjct: 7 NEDEQYQYFDAHDDMDAASLSDSSSDCNDNPNSSSGFNNYASRAFQYDVWAGSPGSVKER 66
Query: 55 RSKFLDWMEAGLDGLSGNKPVDM--GSFGGEDDGLCKSSGAVLRIAGIEEEFRSIRSVRS 112
R+KFL+WM LD S + VD+ S GG D + +SSGAVLR G E+EF S RS S
Sbjct: 67 RNKFLNWMGLSLDRFSCDNSVDVCSDSLGGGVDRVRESSGAVLRTLGFEDEFCSSRSSMS 126
Query: 113 GRSNDNVELP-EENFPCKDGNYDREMACDVDQMGPDGQISNCREIYLEN----------- 160
SN+ E +E F C+ GN D DVD+MG ++S RE+ L+
Sbjct: 127 RWSNEQDESGLQEKFVCRIGNLDVGAEFDVDEMGEGSEVSEFREVGLDRLVTINECQNIS 186
Query: 161 ----TSELLPLMDEIVEKESSAAGKAERVKKRWFSRLRSLACVVDKQGEGERVRLNEEDA 216
+S + ++ +E+ S+ G A+RVKK W SRLRS++C++D+ GE + N+ +
Sbjct: 187 DSLLSSSVQQVIQREIEEASNPVGAAKRVKKGWLSRLRSMSCIMDRHGEIHNLTTNDTNP 246
Query: 217 MFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRL 276
+ +++QRV+V C+K+ KELSALYKGQ+IQAH+GSIL+MKFSPDG+YLASAG+DG+VR+
Sbjct: 247 IPGARIQRVRVRQCRKQMKELSALYKGQDIQAHEGSILSMKFSPDGKYLASAGEDGIVRI 306
Query: 277 WQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFP 336
WQVVEDER + DIPEIDP CIYFTVNHLSEL PLF +KEK+S L+SLR+TS+SACV+FP
Sbjct: 307 WQVVEDERSNDHDIPEIDPMCIYFTVNHLSELTPLFAEKEKLSKLRSLRKTSDSACVIFP 366
Query: 337 PKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNY 396
PKVFRILEKPLHEFHGHS EILDLSWS NNYLLS+SIDKTVRLWRVG DHCL++F H+NY
Sbjct: 367 PKVFRILEKPLHEFHGHSSEILDLSWSNNNYLLSSSIDKTVRLWRVGCDHCLKIFSHNNY 426
Query: 397 VTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSM 456
VTCV FNPVDDNYFISGSIDGKVRIWA+ C VVDW DIR++VTAVCYRPDGQGGIVGSM
Sbjct: 427 VTCVQFNPVDDNYFISGSIDGKVRIWAIPGCQVVDWTDIREMVTAVCYRPDGQGGIVGSM 486
Query: 457 MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQG 516
G CRFYNVSDNHL+L++++C+H KKK+ CKRITGFQF PQD S VMV+CADSQVRIL G
Sbjct: 487 TGTCRFYNVSDNHLQLESQMCLHGKKKSLCKRITGFQFSPQDPSTVMVTCADSQVRILHG 546
Query: 517 PNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLE 576
NVIGKYKGLR +GNQ+SA FTSDGKHIVSA +DSNVY+WNC EPA Q+K+IR+ E
Sbjct: 547 TNVIGKYKGLRNAGNQMSASFTSDGKHIVSACDDSNVYVWNCSNEGEPALSQSKSIRAFE 606
Query: 577 RFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAF-APARFSLGQEYVFESFPKGC 635
F TNAS+AIPWCG+K GN E Q H D+ SP L F +PA FSL QE+ ESFPKG
Sbjct: 607 HFLTNASVAIPWCGMKYGNPENGWQFHALDESSPNTLPFPSPASFSLSQEFFSESFPKGS 666
Query: 636 ATWPEEKLPALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFLNY 695
ATWPEEKLP S +S S +HKS++KFLK +C T+SSHAWGLVIVTAGWDGRIRSF NY
Sbjct: 667 ATWPEEKLPTSSLVSVPSKIHKSEHKFLK-ACQSTSSSHAWGLVIVTAGWDGRIRSFHNY 725
Query: 696 GLPIPV 701
GLP P+
Sbjct: 726 GLPAPL 731
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255587633|ref|XP_002534336.1| WD-repeat protein, putative [Ricinus communis] gi|223525468|gb|EEF28046.1| WD-repeat protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 888 bits (2295), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 449/717 (62%), Positives = 549/717 (76%), Gaps = 22/717 (3%)
Query: 3 GSSEDEECPFFDASEDIASISGA-----TSDSNDMFDSYYGFNS--EVWVRTPKSVKERR 55
GS +EE FFDA +DIAS+S A TSDS+ D+ + EVW ++P+SV+ERR
Sbjct: 2 GSLSEEEYHFFDAHDDIASVSDAKSDIETSDSHSCADNSIPSSPHFEVWTKSPRSVEERR 61
Query: 56 SKFLDWMEAGLDGLSGNKPVDMGSFGGEDDGLCKSSGAVLRIAGIEEEFRSIRSVRSGRS 115
S+FL+WM+ GLD + +++GS GE D + +SSGAVLR + EEEF S RS S S
Sbjct: 62 SRFLNWMQVGLDQRANGSSIEVGSMEGEIDRIRESSGAVLRKSIFEEEFCSTRSTMSCWS 121
Query: 116 NDNV-----EL-PEENFPCKDGNYDREMACDVDQMGPDGQISNCREIYLENTSELLPLMD 169
N++ EL +ENF C++G Y M + D++ + ++ + NT P
Sbjct: 122 NNDTSNLLEELGSKENFLCREGTYGGGMVFN-DEVNTEHSVTAEESV---NTYGSSPSFQ 177
Query: 170 EIVEKESSAAGK----AERVKKRWFSRLRSLACVVDKQGEGERVRLNEEDAMFCSKVQRV 225
+ +++E+ KK+W ++LRS+ACVVDKQ E E++R +++DA+ KVQRV
Sbjct: 178 QFIQRETDEPSNLMDIPRTAKKKWLNKLRSIACVVDKQREAEKLRHDDDDALLQYKVQRV 237
Query: 226 KVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERL 285
KV KR+KELSALYKGQ+IQAH+GSI TMKFSPDGQYLASAG+D VVRLW+V+EDER
Sbjct: 238 KVRQSGKRTKELSALYKGQDIQAHEGSIRTMKFSPDGQYLASAGEDRVVRLWRVLEDERS 297
Query: 286 TEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEK 345
E+DIPEIDPSC+YFTV+HLSELKPLF+DKEK + LKSLR+TS+SACVVFPPKVFRILEK
Sbjct: 298 NELDIPEIDPSCVYFTVDHLSELKPLFIDKEKTAKLKSLRKTSDSACVVFPPKVFRILEK 357
Query: 346 PLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPV 405
P+HEFHGH GEILDLSWSK+++LLSAS DKTVRLWRVG+DHCLRVF HSNYVTCV FNPV
Sbjct: 358 PVHEFHGHKGEILDLSWSKDHHLLSASEDKTVRLWRVGSDHCLRVFSHSNYVTCVQFNPV 417
Query: 406 DDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNV 465
D+NYF+SGSIDGKVRIWA+ C VVDW DI++IVTAVCY PDGQGGIVGS+ G+CRFYN+
Sbjct: 418 DNNYFMSGSIDGKVRIWAIPCCQVVDWTDIKEIVTAVCYHPDGQGGIVGSIEGNCRFYNM 477
Query: 466 SDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKG 525
SD+HL+LDAEIC+ SKKK+PCK ITGFQF PQDS+K+MV+ ADSQVRILQG NVIGKYKG
Sbjct: 478 SDSHLQLDAEICLRSKKKSPCKTITGFQFFPQDSTKLMVTSADSQVRILQGLNVIGKYKG 537
Query: 526 LRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIA 585
L+ + +Q+SA FTSDGKHI+SA EDSNVYMWNCI +E QAK IRS ERF+TNAS+A
Sbjct: 538 LKNASSQMSASFTSDGKHIISASEDSNVYMWNCINQQENVPVQAKKIRSCERFSTNASVA 597
Query: 586 IPWCGLKCGNAEKEPQLHVSDDDSPENLAF-APARFSLGQEYVFESFPKGCATWPEEKLP 644
IPW GL+ GN HVS+ SPE + F +PA F LGQEY ES+PKG ATWPEEKLP
Sbjct: 598 IPWSGLRHGNLRNGWGFHVSNGYSPEVMPFSSPASFFLGQEYFLESYPKGSATWPEEKLP 657
Query: 645 ALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFLNYGLPIPV 701
S S++S ++KS KFL++S T SHAWGLVIVTAGWDGRIRSF NYGLP+ V
Sbjct: 658 VSSPFSASSGMNKSHCKFLEASRQNTAISHAWGLVIVTAGWDGRIRSFHNYGLPVSV 714
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224132702|ref|XP_002321388.1| predicted protein [Populus trichocarpa] gi|222868384|gb|EEF05515.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 879 bits (2271), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 449/725 (61%), Positives = 553/725 (76%), Gaps = 30/725 (4%)
Query: 3 GSSEDEECPFFDASEDIASISGATSDSNDMFDSYYGFNS--------EVWVRTPKSVKER 54
GS +EE FFDA ED+ASIS A SDS ++FDS+ F++ E+W+++P SV+ER
Sbjct: 2 GSLSEEEYRFFDAYEDVASISDAKSDSIEIFDSHSSFDNSITRSPPYELWIKSPGSVQER 61
Query: 55 RSKFLDWMEAGLDGLSGNKPVDMGSFGGEDDGLCKSSGAVLRIAGIEEEFRSIRSVRS-- 112
RSKF DWM G+D +G + ++ S GE D + +SSGAVLR + E+EF S RS+ S
Sbjct: 62 RSKFFDWMGVGVD-QNGYRNLEEFSLEGESDRIRESSGAVLRKSCFEDEFCSTRSMMSCW 120
Query: 113 --GRSNDNVELPE-ENFPCKDGNYDREMACDVDQMGPDGQISNCREI---------YLEN 160
G SN EL ENF C+DG M C+VD++G G+ + E+ E
Sbjct: 121 SNGESNLLAELGSVENFVCRDGVSGSGMMCNVDELGQHGKANEGCEVGSEQSVTAEESEK 180
Query: 161 TSELLPLMDEIVEKE----SSAAGKAERVKKRWFSRLRSLACVVDKQGEGERVRLNEEDA 216
TSE P ++V+KE ++ R+KK W SR+RS+ C+VD+ E +++R +++DA
Sbjct: 181 TSESYPSFQQLVQKEVGEPNTLVDTPRRLKKGWLSRIRSITCIVDRPQEADKLRHDDDDA 240
Query: 217 MFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRL 276
+ +VQR+KV C KR+KELSALYKGQ+IQAH+GSILTMKFSPDGQYLASAG+DGVVR+
Sbjct: 241 LLRHRVQRIKVRRCGKRTKELSALYKGQDIQAHEGSILTMKFSPDGQYLASAGEDGVVRV 300
Query: 277 WQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFP 336
WQV+E ER E+DIPEIDPSC+YFTVN L ELKPLF DKEK + ++S+R+TS+SACV+FP
Sbjct: 301 WQVLEGERSNELDIPEIDPSCMYFTVNQLPELKPLFFDKEKTAKMRSMRKTSDSACVIFP 360
Query: 337 PKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNY 396
PKVFRILEKPLHEFHGHSGE+LDLSWSKNN+LLSAS D TVRLW+VG D CLRVFPHSNY
Sbjct: 361 PKVFRILEKPLHEFHGHSGEVLDLSWSKNNHLLSASEDTTVRLWQVGCDCCLRVFPHSNY 420
Query: 397 VTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSM 456
VTCV FNPVDDN+F+SGSIDGKVRIWAV S VVDW DI+ +VTAVCYRPDGQGGIVGSM
Sbjct: 421 VTCVQFNPVDDNHFMSGSIDGKVRIWAVNSRQVVDWTDIKDMVTAVCYRPDGQGGIVGSM 480
Query: 457 MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQG 516
G+CRFYN+SD+HL+LDA+IC+ KKK+PCKRITGFQF PQDSSKVMV+CADSQVRILQG
Sbjct: 481 TGNCRFYNMSDSHLQLDAQICLLGKKKSPCKRITGFQFSPQDSSKVMVTCADSQVRILQG 540
Query: 517 PNVIGKYKGLR-RSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSL 575
+VIGKYKG+ + NQ+SA FT DGKHIVS EDS+V++WN + E+P+ ++K RS
Sbjct: 541 LDVIGKYKGMHCNAANQISASFTLDGKHIVSTCEDSSVHLWNYVDQEQPSTPRSKNSRSY 600
Query: 576 ERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAF-APARFSLGQEYVFESFPKG 634
E FT NAS+AIPWCG+K G +E VSD+ S E L +PA FSL QEY ESFPKG
Sbjct: 601 EHFTANASVAIPWCGMKYGGSENGWGFRVSDNSSQEVLPLSSPASFSLSQEYFVESFPKG 660
Query: 635 CATWPEEKLPALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFLN 694
ATWPEEKLP+ +S++ +HKSQYKFLK+SC T +SHAWGLVIVTAGWDGRI+SF N
Sbjct: 661 SATWPEEKLPSSPLSASST-MHKSQYKFLKNSCQSTAASHAWGLVIVTAGWDGRIKSFHN 719
Query: 695 YGLPI 699
YGLP+
Sbjct: 720 YGLPV 724
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|302143934|emb|CBI23039.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 870 bits (2247), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 436/702 (62%), Positives = 530/702 (75%), Gaps = 40/702 (5%)
Query: 5 SEDEECPFFDASEDI--ASISGATSDSNDMFDSYYGFNSEVWVRTPKSVKERRSKFLDWM 62
+EDE+ +FDA +D+ AS+S +T F +VW +P SVKERR+KFL+WM
Sbjct: 8 NEDEQYQYFDAHDDMDAASLSDST------------FQYDVWAGSPGSVKERRNKFLNWM 55
Query: 63 EAGLDGLSGNKPVDM--GSFGGEDDGLCKSSGAVLRIAGIEEEFRSIRSVRSGRSNDNVE 120
LD S + VD+ S GG D + +SSGAVLR G E+EF S RS ++E
Sbjct: 56 GLSLDRFSCDNSVDVCSDSLGGGVDRVRESSGAVLRTLGFEDEFCSSRS--------SIE 107
Query: 121 LPEENFPCKDGNYDREMACDVDQMGPDGQISNCREIYLENTSELLPLMDEIVEKESSAAG 180
+ E ++ DR + + Q D +S S + ++ +E+ S+ G
Sbjct: 108 VSE----FREVGLDRLVTINECQNISDSLLS----------SSVQQVIQREIEEASNPVG 153
Query: 181 KAERVKKRWFSRLRSLACVVDKQGEGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSAL 240
A+RVKK W SRLRS++C++D+ GE + N+ + + +++QRV+V C+K+ KELSAL
Sbjct: 154 AAKRVKKGWLSRLRSMSCIMDRHGEIHNLTTNDTNPIPGARIQRVRVRQCRKQMKELSAL 213
Query: 241 YKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYF 300
YKGQ+IQAH+GSIL+MKFSPDG+YLASAG+DG+VR+WQVVEDER + DIPEIDP CIYF
Sbjct: 214 YKGQDIQAHEGSILSMKFSPDGKYLASAGEDGIVRIWQVVEDERSNDHDIPEIDPMCIYF 273
Query: 301 TVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDL 360
TVNHLSEL PLF +KEK+S L+SLR+TS+SACV+FPPKVFRILEKPLHEFHGHS EILDL
Sbjct: 274 TVNHLSELTPLFAEKEKLSKLRSLRKTSDSACVIFPPKVFRILEKPLHEFHGHSSEILDL 333
Query: 361 SWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVR 420
SWS NNYLLS+SIDKTVRLWRVG DHCL++F H+NYVTCV FNPVDDNYFISGSIDGKVR
Sbjct: 334 SWSNNNYLLSSSIDKTVRLWRVGCDHCLKIFSHNNYVTCVQFNPVDDNYFISGSIDGKVR 393
Query: 421 IWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHS 480
IWA+ C VVDW DIR++VTAVCYRPDGQGGIVGSM G CRFYNVSDNHL+L++++C+H
Sbjct: 394 IWAIPGCQVVDWTDIREMVTAVCYRPDGQGGIVGSMTGTCRFYNVSDNHLQLESQMCLHG 453
Query: 481 KKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSD 540
KKK+ CKRITGFQF PQD S VMV+CADSQVRIL G NVIGKYKGLR +GNQ+SA FTSD
Sbjct: 454 KKKSLCKRITGFQFSPQDPSTVMVTCADSQVRILHGTNVIGKYKGLRNAGNQMSASFTSD 513
Query: 541 GKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEP 600
GKHIVSA +DSNVY+WNC EPA Q+K+IR+ E F TNAS+AIPWCG+K GN E
Sbjct: 514 GKHIVSACDDSNVYVWNCSNEGEPALSQSKSIRAFEHFLTNASVAIPWCGMKYGNPENGW 573
Query: 601 QLHVSDDDSPENLAF-APARFSLGQEYVFESFPKGCATWPEEKLPALSQLSSASALHKSQ 659
Q H D+ SP L F +PA FSL QE+ ESFPKG ATWPEEKLP S +S S +HKS+
Sbjct: 574 QFHALDESSPNTLPFPSPASFSLSQEFFSESFPKGSATWPEEKLPTSSLVSVPSKIHKSE 633
Query: 660 YKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFLNYGLPIPV 701
+KFLK +C T+SSHAWGLVIVTAGWDGRIRSF NYGLP P+
Sbjct: 634 HKFLK-ACQSTSSSHAWGLVIVTAGWDGRIRSFHNYGLPAPL 674
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224120878|ref|XP_002318441.1| predicted protein [Populus trichocarpa] gi|222859114|gb|EEE96661.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 803 bits (2073), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 430/714 (60%), Positives = 522/714 (73%), Gaps = 80/714 (11%)
Query: 3 GSSEDEECPFFDASEDIASISGATSDSNDMFDSYYGFNS--------EVWVRTPKSVKER 54
GS +EE FFDA EDIASIS A SDS ++FDS+ F++ E+W+++ SV+E+
Sbjct: 2 GSLSEEEHRFFDAYEDIASISDAKSDSFEIFDSHSSFDNSVSISLHHELWIKSLGSVQEQ 61
Query: 55 RSKFLDWMEAGLDGLSGNKPVDMGSFGGEDDGLCKSSGAVLRIAGIEEEFRSIRSVRSGR 114
RSKF DWM G++ SSGAVLR + E+EF S RS+ S
Sbjct: 62 RSKFFDWM--GIE----------------------SSGAVLRKSCFEDEFCSTRSMMSCW 97
Query: 115 SNDNVELPEE-----NFPCKDGNYDREMACDVDQMGPDGQISNCREIYLENTSELLPLMD 169
SN L E NF C++G+ M C VD++G D P+ +
Sbjct: 98 SNGESSLSAELGLMGNFVCREGDSGGGMVCKVDELGQDK-----------------PMQN 140
Query: 170 EIVEKESSAAGKAERVKKRWFSRLRSLACVVDKQGEGERVR---LNEEDAMFCSKVQRVK 226
E+ E ++ R+KK W SR+RS++C+V E +++R +++DA+ +VQRVK
Sbjct: 141 EVGEP-NTLVDTPRRLKKGWLSRIRSISCIVYSLREADKLRHDDDDDDDALLRYRVQRVK 199
Query: 227 VYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLT 286
V+ KR KELSALYKGQ+IQAH+GSILTMKFSPDGQYLASAG+DGVVR+WQV+E ER
Sbjct: 200 VHRYGKRIKELSALYKGQDIQAHEGSILTMKFSPDGQYLASAGEDGVVRVWQVLESERSN 259
Query: 287 EVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKP 346
E+DIPEIDPSCIYFTVN LSELKPL ++KE+ + ++S+R+TS+SACV+FPPKVFRILEKP
Sbjct: 260 ELDIPEIDPSCIYFTVNQLSELKPLLVEKERTAKMRSMRKTSDSACVIFPPKVFRILEKP 319
Query: 347 LHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPV 405
LHEFHGH EILDLSWSKNN +LLSAS+DKTV LW+VG D CLRVF HSNYVTCV FNPV
Sbjct: 320 LHEFHGHREEILDLSWSKNNQHLLSASVDKTVCLWQVGRDSCLRVFLHSNYVTCVQFNPV 379
Query: 406 DDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNV 465
DDN+F+SGSIDGKVRIWAV SC VVDW DI+ IVTAVCYRPDGQGGIVGS+ G+CRFYN+
Sbjct: 380 DDNHFMSGSIDGKVRIWAVNSCQVVDWTDIKDIVTAVCYRPDGQGGIVGSLTGNCRFYNM 439
Query: 466 SDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKG 525
SD++L+LDA+IC+ KKK+PCKRITGFQF PQDS+KVMVSCADSQVRILQG +VIGKYK
Sbjct: 440 SDSYLQLDAQICLPGKKKSPCKRITGFQFSPQDSTKVMVSCADSQVRILQGLDVIGKYKS 499
Query: 526 LRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIA 585
+ NQ+SA FT DGKHI+SA EDSNV++WN I E+ A Q+K RS E F+ NAS+A
Sbjct: 500 --NTANQISASFTLDGKHIISACEDSNVHLWNYIDQEQHATPQSKNSRSYEHFSANASVA 557
Query: 586 IPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEKLPA 645
IPWCGLK L +S +PA FSL QEY ESFPKGCATWPEEKL +
Sbjct: 558 IPWCGLKF--------LPLS----------SPAHFSLSQEYFSESFPKGCATWPEEKL-S 598
Query: 646 LSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFLNYGLPI 699
S LS++SA+HKSQYKFLK+SC T SSHAWGLVIVTAGWDGRI+SF NYGLP+
Sbjct: 599 SSPLSTSSAMHKSQYKFLKTSCQSTDSSHAWGLVIVTAGWDGRIKSFHNYGLPV 652
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356518647|ref|XP_003527990.1| PREDICTED: uncharacterized protein LOC100817209 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 787 bits (2032), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 423/715 (59%), Positives = 514/715 (71%), Gaps = 30/715 (4%)
Query: 1 MAGSSEDEECPFFDASEDIA-SISGATSDSNDMFDSYYGFNSEVWVRTPKSVKERRSKFL 59
M SEDEEC FFDA ED+ SI+ SN GF+ E+W+R+P+SV ERR F+
Sbjct: 1 MGSFSEDEECRFFDAQEDVVVSIADDEGVSN-------GFDYEMWIRSPRSVSERRGTFM 53
Query: 60 DWM---EAGLDGLSGNKPVDMGSFGGED---DGLCKSSGAVLRIAGIEEEFRSIRSVRSG 113
M L L VD+ S ++ D + +SGAV R +EEEF S R+ S
Sbjct: 54 KRMGLSSVDLVALENENSVDVCSVECKEEVMDRVNVNSGAVTRNCVMEEEFCSSRTSMSC 113
Query: 114 RSNDNVELP---EENFPCKDGNYDREMACDVDQMGPDGQISNCREIYLENTSELLPLMDE 170
S +N +N PC+DGN D+E +M + + R + E E E
Sbjct: 114 WSRENSSGGFGIVDNSPCQDGNLDQE-GLQCREMSEGRDLDSDRSVVAEEHKE-----SE 167
Query: 171 IVEKESSA---AGKAERVKKRWFSRLRSLACVVDKQGEGERVRLNEEDAMFCS-KVQRVK 226
+E+ A GK + KK W RLRS+ C++++Q EG+ R M + ++Q+VK
Sbjct: 168 NAFRETDANVSVGKMNKYKKGWLRRLRSITCMLNRQDEGDNGREEGLGEMSGTCRLQKVK 227
Query: 227 VYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLT 286
V KK+ KELSALY Q+ QAH+GSILTMKFSPDGQYLAS G+DGVVRLWQVVE++R
Sbjct: 228 VRQSKKQMKELSALYIRQDFQAHEGSILTMKFSPDGQYLASGGEDGVVRLWQVVEEDRCN 287
Query: 287 EVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKP 346
EVDIPEIDPSCIYFTVN+LSEL PLFMDKEKIS LKSL++TS+SAC+VFPPK+FR+LEKP
Sbjct: 288 EVDIPEIDPSCIYFTVNNLSELTPLFMDKEKISKLKSLKKTSDSACIVFPPKIFRLLEKP 347
Query: 347 LHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVD 406
LHEF GH GE+LDLSWS NNYLLS+S+DKTVRLW+V +DHCL+VF HSNYVTC+ FNPVD
Sbjct: 348 LHEFRGHRGEVLDLSWSNNNYLLSSSVDKTVRLWQVNHDHCLKVFSHSNYVTCIQFNPVD 407
Query: 407 DNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVS 466
DNYFISGSIDGKVRIWA+ CHVVDW+DI+ IVTAVCYRPDGQGGI+GS+ G+CRFYNVS
Sbjct: 408 DNYFISGSIDGKVRIWAIPDCHVVDWIDIKDIVTAVCYRPDGQGGIIGSLTGNCRFYNVS 467
Query: 467 DNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGL 526
+N L+LD+++C+ KKK P + ITGFQFLPQDS+KVMVSCADSQVRIL G NVIGKYK L
Sbjct: 468 ENLLQLDSQLCLIGKKKLPGRGITGFQFLPQDSNKVMVSCADSQVRILDGLNVIGKYKSL 527
Query: 527 RRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAI 586
+G+ + A TSDGKHI+SA EDSNVY+WN + EE +AK I S ERF +NAS+A+
Sbjct: 528 -STGSPMCASMTSDGKHILSACEDSNVYLWN-VSQEESNPLKAKKITSCERFFSNASVAV 585
Query: 587 PWCGLKCGNAEKEPQLHVSDDDSPENLAFA-PARFSLGQEYVFESFPKGCATWPEEKLPA 645
PW GLK N E E QL D S + + + PA FSL QE+ ESFPKG ATWPEEKLP
Sbjct: 586 PWHGLKSQNIEIEHQLDALDKTSSQVIQLSPPASFSLSQEFFLESFPKGSATWPEEKLPV 645
Query: 646 LSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFLNYGLPIP 700
S + AS + KS+YKFLKSSC T+S+HAWG+VIVTAGWDGRI+SF NYGLPIP
Sbjct: 646 SSPKAKASVMRKSEYKFLKSSCKSTSSAHAWGMVIVTAGWDGRIKSFHNYGLPIP 700
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449456415|ref|XP_004145945.1| PREDICTED: WD repeat-containing protein 44-like [Cucumis sativus] gi|449528491|ref|XP_004171238.1| PREDICTED: WD repeat-containing protein 44-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 756 bits (1953), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/723 (56%), Positives = 505/723 (69%), Gaps = 25/723 (3%)
Query: 1 MAGSSEDEECPFFDASE-DIASISGATSDSNDM-FDSYYGFNS--------EVWVRTPKS 50
M S DEECPFFDA E + SIS D + FDS+ FN+ +VW R+PKS
Sbjct: 1 MGSVSGDEECPFFDAQEINAPSISEPNCDGIEAAFDSHPRFNNWVDGSLVYDVWNRSPKS 60
Query: 51 VKERRSKFLDWMEAGLDGLS----GNKPVDMGSFGGEDDGLCKSSGAVLRIAGIEEEFRS 106
V ERR KFL WM GLD GN + +G E D + + + E+ F S
Sbjct: 61 VHERRRKFLTWMGMGLDRTPPPCHGNS-LSLGCDWREGDVGRLRDNSGVESSDFEDVFCS 119
Query: 107 IRSVRSGRSNDNVELPE----ENFPCKDGNYDREMACDVDQMGPDGQ--ISNCREIYLEN 160
RS S S D++EL E +D E + P + ++ E +
Sbjct: 120 GRSSISCWSTDDIELAEMASTNTVLYRDDVIKGECGRKNGDLKPSVRFAMAEELEETSSS 179
Query: 161 TSELLPLMDEIVEKESSAAGKAERVKKRWFSRLRSLACVVDKQGEGERVRLNEEDAMFCS 220
+ +M E+ + + A RV KRW +LRS AC+ DK G+ R+ + ++D+ S
Sbjct: 180 SPSFQQMMQMEAERVNIPSRSARRVNKRWLKKLRSAACIFDKHGKSTRLVV-DDDSAAGS 238
Query: 221 KVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVV 280
+V+RVKV HCKK KELSA+Y GQ+I+AH+G+ILTMKFSP+GQYLA+ GDDG+V+LWQV+
Sbjct: 239 RVRRVKVRHCKKHLKELSAMYMGQDIKAHEGAILTMKFSPNGQYLATGGDDGIVKLWQVI 298
Query: 281 EDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVF 340
EDER E DIPEIDPSCIYFTVN LSELKPL ++KEK++ +LR+TSESAC++FPPK+F
Sbjct: 299 EDERSNESDIPEIDPSCIYFTVNRLSELKPLLVEKEKLANSMTLRKTSESACIIFPPKIF 358
Query: 341 RILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCV 400
RIL++PLHEFHGHSG+ILDLSWSKNNYLLS+SIDKTVRLWR+G+D CLRVF HSNYVTCV
Sbjct: 359 RILDRPLHEFHGHSGDILDLSWSKNNYLLSSSIDKTVRLWRLGSDDCLRVFSHSNYVTCV 418
Query: 401 HFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDC 460
HFNP+D+NYFISGSIDGK+RIW + SC VVDW+DIR+IVTAV Y PDG+GGIVGS+ G C
Sbjct: 419 HFNPMDENYFISGSIDGKIRIWGIPSCQVVDWIDIREIVTAVSYHPDGRGGIVGSINGTC 478
Query: 461 RFYNV-SDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV 519
RF+ V DN+LELD EIC+ SKKK+P K+ITGFQ+ +DSS++MVS ADS++RI+QG NV
Sbjct: 479 RFFKVIGDNNLELDGEICLSSKKKSPSKKITGFQYSAEDSSRIMVSSADSRIRIIQGLNV 538
Query: 520 IGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFT 579
I KYKG +GNQ SA FTSDGKHI+SA DSNVY+WNC E K I+S E F+
Sbjct: 539 IQKYKGPCNTGNQTSASFTSDGKHIISASGDSNVYVWNCSYKNEAVLSPVKKIKSYEYFS 598
Query: 580 TNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAF-APARFSLGQEYVFESFPKGCATW 638
+NASIA+PW GL+C E +S E +PA FSL QE + ESFPKG ATW
Sbjct: 599 SNASIAVPWYGLRCNTEAGERHFPGMQRNSSETFPLPSPAFFSLSQE-LLESFPKGSATW 657
Query: 639 PEEKLPALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFLNYGLP 698
PEEKLP S L S +HKS+YKFLK SC T+SSHAWGLVIVTAGWDGRIRSF NYGLP
Sbjct: 658 PEEKLPTSSLLPKPSMMHKSRYKFLKLSCQNTSSSHAWGLVIVTAGWDGRIRSFHNYGLP 717
Query: 699 IPV 701
+P+
Sbjct: 718 VPI 720
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356507576|ref|XP_003522540.1| PREDICTED: uncharacterized protein LOC100807177 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 753 bits (1943), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 420/720 (58%), Positives = 513/720 (71%), Gaps = 40/720 (5%)
Query: 1 MAGSSEDEECPFFDASEDIASISGATSDSNDMFDSYYGFNSEVWVRTPKSVKERRSKFLD 60
M SEDEEC FFDA ED+ SI + GF+ EVW+R+P+SV+ERR KF+
Sbjct: 1 MGSFSEDEECRFFDAQEDVVSIPDEGVSN--------GFDYEVWIRSPRSVRERRGKFMK 52
Query: 61 WM---EAGLDGLSGNKPVDMGSFGGED---DGLCKSSGAVLRIAGIEEEFRSIRSVRS-- 112
M L L VD+ S E+ D + +SGAV R +EEEF S R+ S
Sbjct: 53 RMGLSSVDLVALENENSVDVRSVECEEEVMDRVNVNSGAVTRNCVMEEEFCSSRTSMSCW 112
Query: 113 GRSNDNVELPE-ENFPCKDGNYDREMACDVDQMGPDGQISNCREIY--LENTSELLPLMD 169
R N + E ++ PC DGN + +VDQ G CRE+ + S+ + +
Sbjct: 113 HRENSSGEFGMVDSSPCHDGN----LEGNVDQEGL-----QCREMSEGRDLDSDRSVVAE 163
Query: 170 EIVEKESS--------AAGKAERVKKRWFSRLRSLACVVDKQGEGERVRLNEEDAMFCS- 220
E E E++ GK + +K W RLRS+ C+V++Q EG+ R M +
Sbjct: 164 EFKESENALRGTNGNVTVGKMNKYRKGWLRRLRSITCMVNRQEEGDNGREEGLGEMSGTC 223
Query: 221 KVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVV 280
++Q+VKV KK+ KELSALY Q+IQAH+GSILTMKFSPDGQYLAS G+DGVVRLWQVV
Sbjct: 224 RLQKVKVRQSKKQMKELSALYMRQDIQAHEGSILTMKFSPDGQYLASGGEDGVVRLWQVV 283
Query: 281 EDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVF 340
E++R EVDIPEID SCIYFTVN+LSEL PLF+DKEKIS LKSL++TS+SAC+VFPPK+F
Sbjct: 284 EEDRCNEVDIPEIDLSCIYFTVNNLSELTPLFIDKEKISKLKSLKKTSDSACIVFPPKIF 343
Query: 341 RILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCV 400
R+LEKPLHEF GH GE+LDLSWS NNYLLS+S+DKTVRLW+V +D CL+VF HSNYVTC+
Sbjct: 344 RLLEKPLHEFRGHRGEVLDLSWSSNNYLLSSSVDKTVRLWQVNHDRCLKVFSHSNYVTCI 403
Query: 401 HFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDC 460
FNPVDDNYFISGSIDGKVRIWA+ CHVVDW+DI+ IVTAVCYRPDGQGGI+GS+ G+C
Sbjct: 404 QFNPVDDNYFISGSIDGKVRIWAIPDCHVVDWIDIKDIVTAVCYRPDGQGGIIGSLAGNC 463
Query: 461 RFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVI 520
RFYNVS+N L+LD+++C+ KKK + ITGFQFLPQDS+KVMVSCADSQVRIL G NVI
Sbjct: 464 RFYNVSENRLQLDSQLCLIGKKKLSGRGITGFQFLPQDSNKVMVSCADSQVRILDGFNVI 523
Query: 521 GKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTT 580
GKYK L +G+ + A TSDGKHI+SA EDSNVY+WN + EE +AK I S ERF +
Sbjct: 524 GKYKNL-STGSPMCASLTSDGKHILSACEDSNVYLWN-VSQEESNPVKAKKITSCERFFS 581
Query: 581 NASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFA-PARFSLGQEYVFESFPKGCATWP 639
NASIA+ W GLK N E + QL D S + + + PA FSL QE+ ESFPKG ATWP
Sbjct: 582 NASIAVTWHGLKSQNIEIQHQLDALDKRSSQVIQLSPPASFSLSQEFFLESFPKGSATWP 641
Query: 640 EEKLPALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFLNYGLPI 699
EEKLP S + S + KS+YKFLKSSC T+S+HAWG+VIVTAGWDGRI+SF NYGLPI
Sbjct: 642 EEKLPVSSPKAKTSVMRKSEYKFLKSSCKSTSSAHAWGMVIVTAGWDGRIKSFHNYGLPI 701
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357436423|ref|XP_003588487.1| WD repeat-containing protein [Medicago truncatula] gi|358344639|ref|XP_003636395.1| WD repeat-containing protein [Medicago truncatula] gi|355477535|gb|AES58738.1| WD repeat-containing protein [Medicago truncatula] gi|355502330|gb|AES83533.1| WD repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 752 bits (1941), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 405/715 (56%), Positives = 504/715 (70%), Gaps = 26/715 (3%)
Query: 1 MAGSSEDEECPFFDASEDIASISGATSDS-NDMFDS--------YYGFNSEVWVRTPKSV 51
MA SE EE FFDA +DI SIS A + N DS F E W R+P SV
Sbjct: 1 MARFSE-EEFQFFDAQDDIVSISDANGVADNHEVDSGPPLGDGLLRDFGYEWWTRSPGSV 59
Query: 52 KERRSKFLDWMEAGLDGLSGNKPVDMGSFGGEDD-GLCKSSGA-VLRIAGIEEEFRSIR- 108
+ERRSKF+ WME LD + VD S+ ED+ K G+ V + G E+F S R
Sbjct: 60 RERRSKFIKWMELSLDQKNLENSVDGSSYEREDEINRMKDGGSSVTKSNGFMEDFFSSRL 119
Query: 109 --SVRSGRSNDNVELPEENFPCKDGNYDREMACDVDQMGPDGQISNCREIYLENTSELLP 166
S S ++ EN C+D N E+ +DQ+ + N E+ +++
Sbjct: 120 SMSCLSSMNSSEFGALVENSACQDRNDGGEVG--LDQLVVSDESVNAAEV---SSTSYQH 174
Query: 167 LMDEIVEKESSAAGKAERVKKRWFSRLRSLACVVDKQGEGERVRLNEEDAMFCS--KVQR 224
E E+ +RVKK W +LRS+ C++D Q +GE ED + S ++QR
Sbjct: 175 EFGEEFEETGVFEPWTKRVKKSWLRKLRSMTCMMDVQ-QGESDNRKHEDGVSFSDCRIQR 233
Query: 225 VKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDER 284
VKV CKK+ KELSALY GQ+IQAH+G I TMKFSPDGQYLASAG+DG+VRLWQVVEDER
Sbjct: 234 VKVRQCKKQRKELSALYMGQDIQAHEGPIFTMKFSPDGQYLASAGEDGIVRLWQVVEDER 293
Query: 285 LTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILE 344
E+DIPE+D SCIYFTVN LSEL PLFMDK+KI+ +K+L++TS+SAC++FPPKVFR++E
Sbjct: 294 HNEIDIPEVDTSCIYFTVNDLSELTPLFMDKDKITNVKTLKKTSDSACIIFPPKVFRLME 353
Query: 345 KPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNP 404
KPLHEFHGH GEILDLSWSKNNYLLS+S+DKTVRLW+VG+D CL+VF HSNYVTC+ FNP
Sbjct: 354 KPLHEFHGHGGEILDLSWSKNNYLLSSSVDKTVRLWQVGHDCCLKVFSHSNYVTCIQFNP 413
Query: 405 VDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYN 464
VDD+YFISGSIDGKVRIW + CHVVDW D+++IVTAVCYRPDGQ GI+GSM G+CRFYN
Sbjct: 414 VDDDYFISGSIDGKVRIWGIPDCHVVDWTDVKEIVTAVCYRPDGQVGIIGSMTGNCRFYN 473
Query: 465 VSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYK 524
VSDN L + +++C+ KKK+ + ITGFQFLPQD +KVMV+C DSQVRI++G NV+ K+K
Sbjct: 474 VSDNQLRMQSQLCLLGKKKSSGRGITGFQFLPQDFNKVMVTCDDSQVRIIEGLNVVEKFK 533
Query: 525 GLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASI 584
GL +G+ +SA FTSDGKHI+SA EDSNVY+WN + E +AK I+S ERF +NAS+
Sbjct: 534 GL-NAGSLMSASFTSDGKHILSACEDSNVYLWN-VSDNESRSTKAKKIKSCERFFSNASV 591
Query: 585 AIPWCGLKCGNAEKEPQLHVSDDDSPENLAF-APARFSLGQEYVFESFPKGCATWPEEKL 643
A+PW GLK N E +L V + P+ + P+ FSL Q++ S PKG AT+PEEKL
Sbjct: 592 AVPWGGLKSDNIENSKKLDVLNKRPPQAVCLDPPSSFSLSQDFYLNSIPKGSATYPEEKL 651
Query: 644 PALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFLNYGLP 698
P S S S+LHKS YKFLKSSC T++ HAWGLVIVTAGWDGRI+SF NYGLP
Sbjct: 652 PTSSPKSKKSSLHKSAYKFLKSSCKSTSNCHAWGLVIVTAGWDGRIKSFHNYGLP 706
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225470952|ref|XP_002264456.1| PREDICTED: uncharacterized protein LOC100241604 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 723 bits (1865), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 400/751 (53%), Positives = 499/751 (66%), Gaps = 52/751 (6%)
Query: 1 MAGSSEDEECPFFDASEDIASISGATSDSNDMFDSYY--------GFNSEVWVRTPKSVK 52
M GS +EE FFD EDI S+S + SD + DS + F EVW++ P+S++
Sbjct: 1 MMGSLSEEEDQFFDTREDITSVSDSGSDCQENLDSEWRNTDFVSGSFGCEVWIKNPESIR 60
Query: 53 ERRSKFLDWMEAGLDGLSGNKPVDM--GSFGGEDDGLCKSSGAVLRIAGIEEEFRSIRSV 110
ERR+KFL WM G+D + P ++ G GE D + ++SGAVL ++ ++ F S +S
Sbjct: 61 ERRTKFLKWMGLGVDHVVREVPEELVSGELKGEIDRITENSGAVLGMSSSDDGFSSSQSS 120
Query: 111 RSGRSNDNVELP---EENFPCKDGNYDREMACDVDQMGPDGQISNCREI---------YL 158
S+ L EEN C+ + D VD++G G +S RE+
Sbjct: 121 MCWPSDAQDFLGGSLEENLFCRIRSLDDGREFIVDELGQYGMLSRLREVGSNRVVTIEEF 180
Query: 159 ENTSELLPLMDEIVEKESSAAGK----AERVKKRWFSRLRSLACVVDKQGEGERVRLNEE 214
E T L PL+ +++ KE+ A A+R ++ W+ RL ++AC+ + E + + N
Sbjct: 181 ERTLGLSPLVQKMMRKEAEKACNPVEAAKRCRRGWWRRLGAVACIANCPIEVGKFKPNGP 240
Query: 215 DAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVV 274
+ +K Q VKV ++RSKELSALY GQ+ AH+GSILTMKFSPDGQYL SAG+D VV
Sbjct: 241 YPILGTKSQTVKVRPYRRRSKELSALYMGQDFVAHEGSILTMKFSPDGQYLGSAGEDRVV 300
Query: 275 RLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVV 334
R+W V E ER D P++D S YFTVNHLSEL P+ DKEK LK+LR++ ++ACV+
Sbjct: 301 RVWLVTESERSDGFDAPDVDCSYAYFTVNHLSELVPIHADKEKKGKLKTLRKSLDAACVI 360
Query: 335 FPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHS 394
FP KVF+ILEKPLHEFHGH GE+LD+SWSKN YLLS+S+DKTVRLW+VG + CL+VF H+
Sbjct: 361 FPQKVFQILEKPLHEFHGHCGEVLDISWSKNKYLLSSSVDKTVRLWQVGCNQCLKVFSHN 420
Query: 395 NYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVG 454
NYVTCV FNPVDDNYFISGSIDGKVRIW + VVDW DI +IVTAVCYRPDG+G IVG
Sbjct: 421 NYVTCVQFNPVDDNYFISGSIDGKVRIWEIPGGQVVDWTDITEIVTAVCYRPDGKGVIVG 480
Query: 455 SMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRIL 514
SM G+CRFY+ SD+ L+L A IC+ KKK+ KRITGFQF P D SK+MV+ ADSQVRIL
Sbjct: 481 SMTGNCRFYDASDDRLQLHALICLQGKKKSSFKRITGFQFSPSDPSKLMVTSADSQVRIL 540
Query: 515 QGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRS 574
G +VI KY+GLR +G+Q+SA FTSDG HIVSA EDSNVY+WNCI + P H QAK S
Sbjct: 541 DGVDVICKYRGLRNAGSQISASFTSDGMHIVSASEDSNVYVWNCISQDVPVHSQAKNNWS 600
Query: 575 LER-FTTNASIAIPWCGLKCGN--------AEKEPQLHVSDDDS-PEN------------ 612
ER F+ NAS+AIPWCG CGN A P+L V+ S PEN
Sbjct: 601 CERFFSNNASVAIPWCGATCGNSIFSNISGAFPSPKLSVNLPRSDPENKPHQCHLGESSS 660
Query: 613 --LAF-APARFSLGQEYVFESFPKGCATWPEEKLPALSQLSSASALHKSQYKFLKSSCLC 669
L F +P FS+G + ES PKG ATWPEEKL S L +SA+ KSQYKFLK+SC
Sbjct: 661 TILPFSSPDHFSVGHGFFSESLPKGSATWPEEKLLTPSSLVVSSAMCKSQYKFLKTSCQS 720
Query: 670 TTSS-HAWGLVIVTAGWDGRIRSFLNYGLPI 699
S HAWGLVIVTAGWDGRIRSF NYGLPI
Sbjct: 721 MFGSPHAWGLVIVTAGWDGRIRSFQNYGLPI 751
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 701 | ||||||
| TAIR|locus:2169769 | 698 | AT5G24320 "AT5G24320" [Arabido | 0.945 | 0.949 | 0.507 | 8.9e-173 | |
| TAIR|locus:2168606 | 654 | AT5G53500 "AT5G53500" [Arabido | 0.797 | 0.854 | 0.505 | 2.4e-166 | |
| TAIR|locus:2165700 | 709 | AT5G42010 "AT5G42010" [Arabido | 0.965 | 0.954 | 0.444 | 2.6e-134 | |
| TAIR|locus:2019494 | 647 | AT1G64610 "AT1G64610" [Arabido | 0.607 | 0.658 | 0.513 | 3.5e-131 | |
| TAIR|locus:2090146 | 883 | AT3G15470 "AT3G15470" [Arabido | 0.514 | 0.408 | 0.473 | 3.9e-104 | |
| TAIR|locus:2153443 | 825 | AT5G54200 "AT5G54200" [Arabido | 0.700 | 0.595 | 0.423 | 1.6e-100 | |
| TAIR|locus:2181733 | 905 | AT5G02430 "AT5G02430" [Arabido | 0.582 | 0.450 | 0.418 | 9.7e-100 | |
| TAIR|locus:2040731 | 903 | AT2G37670 "AT2G37670" [Arabido | 0.607 | 0.471 | 0.421 | 2.6e-93 | |
| TAIR|locus:2028539 | 593 | AT1G48870 [Arabidopsis thalian | 0.436 | 0.516 | 0.427 | 4.3e-74 | |
| UNIPROTKB|Q5JSH3 | 913 | WDR44 "WD repeat-containing pr | 0.582 | 0.446 | 0.307 | 7.8e-45 |
| TAIR|locus:2169769 AT5G24320 "AT5G24320" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1679 (596.1 bits), Expect = 8.9e-173, P = 8.9e-173
Identities = 368/725 (50%), Positives = 476/725 (65%)
Query: 6 EDEECPFFDASEDIASISGATSDSNDMFDSYYG-FNSEVWVRTPKSVKERRSKFLDWMEA 64
E+EE FFDA E+IAS S + S G F +VW+++P + +ERR KFL WM
Sbjct: 7 EEEESRFFDAHEEIASCSSPCKIESP--SSISGEFRYDVWIKSPGNTEERREKFLKWM-- 62
Query: 65 GLDGLSGNKPVDMGSFGG--EDDGLCKSSGAVLRIAGIEEEFRSIRSVRSGRSNDNVELP 122
GLS V+ G S ++ + ++EF S R S +++V+
Sbjct: 63 ---GLSST--VNESKSGNVYRLSSSVNESAVLMSLKSDDDEFSSSRC-DSFSPSESVDRV 116
Query: 123 EENFPCKD-GNYDREMACDVDQMGPDGQISN--CR--------EIYLENTS-ELLPLMDE 170
CK+ G D M DG IS+ C +I E+ +LLP D
Sbjct: 117 VNESLCKEEGEVDSGMVLRNLGFVDDGDISSSLCSLSSSPVSDKIVKEHGEPKLLP--DP 174
Query: 171 IV-EKESSAAGKAERVKKRWFSRLRSLACVVDKQGEGERVRLNEEDAMFCSKVQRVKVYH 229
+V E+E +G +RVK++W SRL V +K+ G E A+ S+++RVKV
Sbjct: 175 MVAEEEREVSGIMKRVKEKWLSRLYK---VRNKRSAGGDDN-GGEVAVCGSRIERVKVKE 230
Query: 230 CKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVD 289
KK +KELSAL+KGQEIQAH+G+IL MKFSPDG+YLASAG+DGV+R+W VVEDER E D
Sbjct: 231 YKKEAKELSALFKGQEIQAHEGAILAMKFSPDGRYLASAGEDGVLRVWSVVEDERCEEHD 290
Query: 290 IPEIDPSCIYFTVNHLSELKPLFMDKEKIS-ILKSLRRTSESACVVFPPKVFRILEKPLH 348
+P+IDPSCIYF V+ LSEL+P+ ++K+ I+ L S R+T+ESACV+ PPK+FR+L+KPLH
Sbjct: 291 VPKIDPSCIYFEVSKLSELRPVAVEKDGITGSLMSPRKTTESACVIIPPKIFRVLDKPLH 350
Query: 349 EFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDN 408
EF GHSG+ILD+SWSKNN LLSAS+D +VRLW++G + CL +F H+NYVT V FNPVDD+
Sbjct: 351 EFLGHSGDILDISWSKNNRLLSASVDNSVRLWQIGCEDCLGIFSHNNYVTSVQFNPVDDD 410
Query: 409 YFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDN 468
+FISGSIDGKVRIW+ C VVDW D R IVTAVCY+PDGQ I+G++ DCRFYNVS +
Sbjct: 411 HFISGSIDGKVRIWSASQCQVVDWADARGIVTAVCYQPDGQAVIIGTLTSDCRFYNVSGH 470
Query: 469 HLELDAEICVHSKKKAPCKRITGFQFLPQ----DSSKVMVSCADSQVRILQGPNVIGKYK 524
L+LD IC+H+KKK+ KRI GFQFL Q D S+VMV+ ADSQVRI+ G NV+ KYK
Sbjct: 471 CLQLDGHICLHNKKKSSNKRIIGFQFLLQFDSTDPSRVMVASADSQVRIISGRNVVHKYK 530
Query: 525 GLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE----EP---AHDQAKTIRSLER 577
G R +GNQ+SA FT+DGKHIVSA +DS+VY+WNC+GH+ P +H + IRS E+
Sbjct: 531 GSRNAGNQISASFTADGKHIVSACDDSSVYVWNCVGHDPEQSSPGFFSHTKRLKIRSFEK 590
Query: 578 FTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCAT 637
F+ + S+AIPWCG P L + +P+ FSLG+EYV +S PKG AT
Sbjct: 591 FSADVSVAIPWCGFT-------PVLSGGSE-------LSPSLFSLGREYVLDS-PKGSAT 635
Query: 638 WPEEKXXXXXXXXXXXXXHKSQYKFLKSSCLCTT-SSHAWGLVIVTAGWDGRIRSFLNYG 696
WPEEK +S YKFL+SSC T+ SSH WGLVIVT GWDGRI+ F NYG
Sbjct: 636 WPEEKLASSFSPVKAI--RRSHYKFLRSSCRRTSESSHLWGLVIVTGGWDGRIKLFHNYG 693
Query: 697 LPIPV 701
LP+PV
Sbjct: 694 LPVPV 698
|
|
| TAIR|locus:2168606 AT5G53500 "AT5G53500" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1401 (498.2 bits), Expect = 2.4e-166, Sum P(2) = 2.4e-166
Identities = 299/591 (50%), Positives = 388/591 (65%)
Query: 38 GFNSEVWVRTPKSVKERRSKFLDWMEAGLDGLSGNKPVDMGSFGGEDDGLCKSSGAVLRI 97
GF +VW +P SV ERR KFL+WM +G K S G C G +
Sbjct: 26 GFGFDVWNDSPGSVVERRRKFLEWMGVEEEGRVETKD----SVSGSSVESCFDGGEENSV 81
Query: 98 AGIEEEFR-SIRSVRSGRSNDNVELPEENFPCKDGNYDREMACDVDQMGPDGQISNCREI 156
E S S S +VE+ EE D N CDV + +++C
Sbjct: 82 EAEERSGECSSSSSEVSLSGSSVEVSEELSLRVDRNVG---GCDVTRR-QSSSMASC--- 134
Query: 157 YLENTSELLPLMDEIVEKESSAAGKAERVKKRWFSRLRSLACVVDKQGE-GERVRLNEED 215
++S + + EK+ + AG KK W SRLRS+ C D E G R+R +
Sbjct: 135 ---SSSRYCQVKE--TEKQRNIAGLVTSFKKGWLSRLRSMGCTADTNIESGGRMRASSG- 188
Query: 216 AMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVR 275
+ + RVKV HCKK++KELSALY+ Q+I+AHDG+IL MKFS DG++LAS+G+DG+VR
Sbjct: 189 --YGDVISRVKVKHCKKQAKELSALYQSQDIKAHDGAILAMKFSNDGKFLASSGEDGIVR 246
Query: 276 LWQVVEDE--RLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKIS-ILKSLRRTSESAC 332
+W+VVED+ RL + EIDPSC+YF VN LS+LKP+ +++EK +S R+TS+SAC
Sbjct: 247 VWKVVEDKKSRLRRDCLNEIDPSCMYFEVNDLSQLKPVLVNEEKPKKTTESFRKTSDSAC 306
Query: 333 VVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP 392
VVFPPKVFRI+EKPL+EF GH+GE+LD+SWSK+NYLLSAS+DKTVRLW+VG++ CL VF
Sbjct: 307 VVFPPKVFRIMEKPLYEFRGHTGEVLDISWSKDNYLLSASMDKTVRLWKVGSNDCLGVFA 366
Query: 393 HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGI 452
H++YVT V FNPV++NYF+SGSIDGKVRIW + C VVDW D++ I++AVCYRPDGQGGI
Sbjct: 367 HNSYVTSVQFNPVNENYFMSGSIDGKVRIWNISGCSVVDWADLKDIISAVCYRPDGQGGI 426
Query: 453 VGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVR 512
+GS+ G CRF+N+S LELD++I +H+KKK+ KRITGFQFLPQ+ +KV+V ADS+VR
Sbjct: 427 IGSLNGSCRFFNMSGEFLELDSQIHLHNKKKSSNKRITGFQFLPQEPTKVLVVSADSKVR 486
Query: 513 ILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTI 572
ILQG NV+ KYKG+ ++ + SA TSDGKHIVSA EDSNVY+W+ EE + K I
Sbjct: 487 ILQGNNVVRKYKGVCKTRSLTSASLTSDGKHIVSACEDSNVYIWS--NDEE---SETKKI 541
Query: 573 RSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLG 623
RS ERF+ NAS+A WCG N P S N F P S G
Sbjct: 542 RSFERFSANASVAATWCGFSDHNTTL-P--FSSPSCLSHNEGFVPGSISKG 589
|
|
| TAIR|locus:2165700 AT5G42010 "AT5G42010" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1316 (468.3 bits), Expect = 2.6e-134, P = 2.6e-134
Identities = 322/724 (44%), Positives = 416/724 (57%)
Query: 5 SEDEECPFFDASEDIASISGATSDSNDMFDSYYGFNSEVWVRTPKSVKERRSKFLDWMEA 64
+E+EE F DA E+++S+S S+ D F G + ++W P+SV RR KF M
Sbjct: 6 NEEEEDWFSDAREEVSSVSDCNSEVADDFVQATG-DLDLWTMNPESVTNRRQKFFQSMGF 64
Query: 65 GLDGLSGNKPVDM-GSFGGEDDGLCKSSGAVLRIAGIEEEFRS--IR--SVRSGRSNDNV 119
+ +D+ G + + K +V EEE +R S SG S +
Sbjct: 65 SFKKRDFDLDLDLLGDSSSDHIPVSKQLTSVSETDHEEEEKEEKLLRNESTSSGSSVSSF 124
Query: 120 ELPE--ENFPCKDGNYDREMACDVDQMGPDGQISNCREIYLENTSEL-LPLMDEIVEKES 176
E F + +R D DQ+ S+ E SE D + +
Sbjct: 125 STASLAEAFSFRGSFQNRAKNID-DQILLTRDYSSNSSSIAEGLSESDSSRFDSYGDLPN 183
Query: 177 SAAGKAERVKKR----WFSRLRSLACVVDKQGEGERVRLNEEDAMFCSKVQRVKVYHCKK 232
S + E K+ W +L L V+DK E + E + Q +V KK
Sbjct: 184 SPMSRYEESPKKGAKGWLKKLGVLTHVLDKTEECT----DGESTRSSIRRQLTRVQSFKK 239
Query: 233 RSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERL-TEVDIP 291
+ KELS+L GQE AHDGSI+ MKFS DG+YLASAG+D VVR+W ++EDER E ++
Sbjct: 240 QFKELSSLCVGQEFSAHDGSIVVMKFSHDGKYLASAGEDCVVRVWNIIEDERRDNEFEVA 299
Query: 292 EIDPSCIYFTVNHLSELKPLFMDKEKISILKSL-RRTSESACVVFPPKVFRILEKPLHEF 350
E D SC+YF +N S+++PL + EKI + L R+ SES C V P KVF I E P HEF
Sbjct: 300 ESDSSCVYFGMNDKSQIEPLKTENEKIEKSRGLLRKKSESTCAVLPSKVFSISETPQHEF 359
Query: 351 HGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGN-DHCLRVFPHSNYVTCVHFNPVDDNY 409
GH+GEILDLSWS+ +LLS+S+D+TVRLWRVG+ D C+RVF H ++VTCV FNPVDDNY
Sbjct: 360 RGHTGEILDLSWSEKGFLLSSSVDETVRLWRVGSSDECIRVFSHKSFVTCVAFNPVDDNY 419
Query: 410 FISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNH 469
FISGSIDGKVRIW V VVD+ DIRQIVTA+CYRPDG+G +VGSM G+CRFY+ +DN
Sbjct: 420 FISGSIDGKVRIWDVSQFRVVDYTDIRQIVTALCYRPDGKGAVVGSMTGECRFYHTTDNQ 479
Query: 470 LELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYK---GL 526
L+LD +I +H KKK P KRITGFQF P DS KVMV+ ADSQ+RI+ G + I K K L
Sbjct: 480 LQLDRDISLHGKKKVPNKRITGFQFFPGDSDKVMVTSADSQIRIICGVDTICKLKKASSL 539
Query: 527 RRS-GNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQA-KTIRSLERFTT-NAS 583
R + + A FTSDGKHIVS E+S +++W+ + A Q KTIRS E F + N S
Sbjct: 540 RTTLMSPTFASFTSDGKHIVSTIEESGIHVWDFSQPNKKASSQKPKTIRSYEGFLSRNVS 599
Query: 584 IAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEK- 642
+AIPW G G KE + ++D + +FA F + +Y F KG TWPEEK
Sbjct: 600 VAIPWLGQ--G---KEDSI-IADLEK----SFA--HFPVPLDY-FSPM-KGATTWPEEKL 645
Query: 643 ---XXXXXXXXXXXXXHKSQYKFLKSSCLCTTSS--HAWGLVIVTAGWDGRIRSFLNYGL 697
+S+ + LKS C S H WGLVIVTA WDG IR F NYGL
Sbjct: 646 GVVAGTAAAAVSATVSSRSKLRLLKSVCQNVHGSTPHLWGLVIVTATWDGSIRVFHNYGL 705
Query: 698 PIPV 701
PI V
Sbjct: 706 PIRV 709
|
|
| TAIR|locus:2019494 AT1G64610 "AT1G64610" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1111 (396.2 bits), Expect = 3.5e-131, Sum P(3) = 3.5e-131
Identities = 239/465 (51%), Positives = 310/465 (66%)
Query: 187 KRWFSRLRSLACVVDKQG-EGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQE 245
K W +L L V++ E R +L++ V RV+ + KK+ KELS++ QE
Sbjct: 164 KSWLKKLGVLTHVLESMDCESVRTQLHQ--------VARVQTH--KKQFKELSSMCIDQE 213
Query: 246 IQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHL 305
AHDGSIL MKFSPDG+Y+ASAG+D VVR+W + E+ER ++ E+D S +YF +N
Sbjct: 214 FSAHDGSILAMKFSPDGKYIASAGEDCVVRVWSITEEERTDTYEVAEVD-SGVYFGMNQR 272
Query: 306 SELKPLFMDKEKISILKS-LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK 364
S+++PL ++ EK S LR++S+S CVV PP +F I EKPLHEF GH GEILDLSWS+
Sbjct: 273 SQIEPLKINNEKTEKKSSFLRKSSDSTCVVLPPTIFSISEKPLHEFKGHIGEILDLSWSE 332
Query: 365 NNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAV 424
YLLS+S+D+TVRLWRVG D CLR F H+N+VTCV FNPVDDNYFISGSIDGKVRIW V
Sbjct: 333 KGYLLSSSVDETVRLWRVGCDECLRTFTHNNFVTCVAFNPVDDNYFISGSIDGKVRIWDV 392
Query: 425 LSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKA 484
C VVD+ DIR IVTAVCYRPD +G ++GSM G+CRFY++ +N L++D EI VH KKK
Sbjct: 393 TRCRVVDYTDIRDIVTAVCYRPDAKGAVIGSMTGNCRFYHIFENQLQMDQEINVHGKKKV 452
Query: 485 PCKRITGFQFLPQDSS--KVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGK 542
KRI+G Q+LP DS KVMV+ ADSQ+RI+ G +VI K K S SA F SDGK
Sbjct: 453 ASKRISGLQYLPSDSDSDKVMVTSADSQIRIICGEDVICKLKA--SSLRTTSASFISDGK 510
Query: 543 HIVSAGEDS--NVYMWNCIGHEEPAHDQAKTIRSLERFTT-NASIAIPWCGLKCGNAEKE 599
HI+S EDS NV+ ++ + ++P + K+IRS E F + NAS+AIPW L+ G +
Sbjct: 511 HIISTSEDSYINVWSYSQLPSKKPYSETPKSIRSYEGFLSHNASVAIPW--LRQGRRDGL 568
Query: 600 PQLHVSDDDS--PENLAFAPARFSLGQEYVFESFPKGCATWPEEK 642
+ ++D D P+ F+P KG TWPEEK
Sbjct: 569 SEC-ITDLDMKIPKVDCFSPM--------------KGSTTWPEEK 598
|
|
| TAIR|locus:2090146 AT3G15470 "AT3G15470" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 883 (315.9 bits), Expect = 3.9e-104, Sum P(3) = 3.9e-104
Identities = 180/380 (47%), Positives = 255/380 (67%)
Query: 223 QRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVED 282
+RV+V K SKEL+ALYK QEIQAH+GSI ++KFS DG+YLASAG+D ++ +WQVVE
Sbjct: 386 ERVRVRQYGKSSKELTALYKTQEIQAHNGSIWSIKFSLDGKYLASAGEDCIIHIWQVVEA 445
Query: 283 ERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVF-PPKVFR 341
E+ E+ + P + N E P M + S+ R S S +F P +F
Sbjct: 446 EKKGELLLDR--PELLLLATNGSPE--PTTMSPRRRG-RTSISRKSLSLENIFVPDSLFG 500
Query: 342 ILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVH 401
+ EKP F GH ++LDL+WSK+ +LLS+S+DKTVRLW + + CL+VF HS+YVTC+
Sbjct: 501 LSEKPFCSFQGHVDDVLDLAWSKSQHLLSSSMDKTVRLWNLSSQTCLKVFSHSDYVTCIQ 560
Query: 402 FNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCR 461
FNPVDD YFISGS+D KVR+W++ VVDW D+ ++VT+ CY PDGQG +VGS G CR
Sbjct: 561 FNPVDDRYFISGSLDAKVRVWSIPDRQVVDWYDLHEMVTSACYTPDGQGVLVGSYKGSCR 620
Query: 462 FYNVSDNHLELDAEICVHSKKK-APCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVI 520
Y+ SDN L+ ++I + +KKK A K+ITGFQF+P SS+V+V+ +DS++R++ G +++
Sbjct: 621 MYSASDNKLQQKSQINLQNKKKKAHQKKITGFQFVPGSSSEVLVTSSDSRIRVVDGTDLV 680
Query: 521 GKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAK-------TI- 572
K KG R + +Q+SA T+DGK++VSA EDS+VY+W +E PA ++ T+
Sbjct: 681 NKLKGFRNTSSQISASITADGKYVVSASEDSHVYIWK---YESPASRPSRSNNNKNVTVT 737
Query: 573 RSLERF-TTNASIAIPWCGL 591
S E F + + S AI W G+
Sbjct: 738 NSYEHFHSQDVSAAISWPGM 757
|
|
| TAIR|locus:2153443 AT5G54200 "AT5G54200" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 955 (341.2 bits), Expect = 1.6e-100, Sum P(2) = 1.6e-100
Identities = 216/510 (42%), Positives = 295/510 (57%)
Query: 206 GERVRLNEEDA--MFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQ 263
G+R +D+ M +RVKV K KEL+AL+K QEIQAH GSI ++KFS DG+
Sbjct: 317 GQRFSSATDDSRDMSFHDPERVKVRQYGKSCKELTALFKSQEIQAHKGSIWSIKFSLDGR 376
Query: 264 YLASAGDDGVVRLWQVVEDER---LTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISI 320
YLASAG+D V+++W+VVE ER L +D E D S F + + S +P+ M ++
Sbjct: 377 YLASAGEDCVIQIWKVVESERKGELLSMDKQE-DGSINLFLLANGSP-EPVSMSPKRRGR 434
Query: 321 LKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLW 380
R++ V+ P VF + EKP+ F GH ++LDLSWSK+ +LLS+S+DKTVRLW
Sbjct: 435 TSFSRKSVSLDNVLVPEAVFGLSEKPVCSFVGHLDDVLDLSWSKSQHLLSSSMDKTVRLW 494
Query: 381 RVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVT 440
+ + CL+VF HS+YVTC+ FNPVDDNYFISGS+D KVRIW++ VVDW D+ ++VT
Sbjct: 495 DLSSKTCLKVFSHSDYVTCIQFNPVDDNYFISGSLDAKVRIWSIPDHQVVDWNDLHEMVT 554
Query: 441 AVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHS-KKKAPCKRITGFQFLPQDS 499
A CY PDGQG +VGS G C YN DN L+ EI + + KKK K+ITGFQF+ S
Sbjct: 555 AACYTPDGQGALVGSYKGTCCLYNTHDNKLQQRREINLKNRKKKTHHKKITGFQFVAGSS 614
Query: 500 SKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCI 559
S+V+V+ ADS+ R++ G +++ K+KG R + +Q+SA TS+GK +VSA EDSNVY+WN
Sbjct: 615 SEVLVTSADSRTRVVDGVDLVHKFKGFRNTNSQISASLTSNGKFLVSASEDSNVYVWNYD 674
Query: 560 GHEEPAHDQAKTI-RSLERF-TTNASIAIPWCGLKCGN-AEKEP-QLHVSDDDSPENLAF 615
+ T+ S E F + S+A PW G N P Q + +++P
Sbjct: 675 SDSRAGRSKRVTVTNSYENFYCRDVSVAAPWPGKISNNHTNNSPEQSSFTANNNPPTPVN 734
Query: 616 APARFSLGQEYVFES------FPKGCATWPEEKXXXXXXXXXXXXXHKSQYKFLKSSCLC 669
P + S F + ATWPEEK S
Sbjct: 735 DPTNNKTVTNGIISSATNRYFFDRVSATWPEEKLLLAAKNRARTSPRVS-VDMSNIQVNT 793
Query: 670 TTSSHAWGLVIVTAGWDGRIRSFLNYGLPI 699
S+ AW +VIVT G IR F N+G P+
Sbjct: 794 KPSASAWSMVIVTGSLRGEIRIFQNFGFPV 823
|
|
| TAIR|locus:2181733 AT5G02430 "AT5G02430" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 839 (300.4 bits), Expect = 9.7e-100, Sum P(4) = 9.7e-100
Identities = 176/421 (41%), Positives = 251/421 (59%)
Query: 223 QRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVED 282
Q VKV H K K+LSAL+ QEIQAH G I TMKFSPD LASAG+D + +W+V E
Sbjct: 384 QWVKVRHSGKSHKDLSALHMCQEIQAHQGGIWTMKFSPDSHLLASAGEDCAIHVWEVQEC 443
Query: 283 E--RLTEVDIPEIDPSCIYFT-VNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPK- 338
E + E + I PS T + + + DK+K ++ ++ V P+
Sbjct: 444 EIMSMNEGSLTPIHPSMSGSTDKSSEGDAAEVSQDKKKKGKTSMSKKGNQIPDYVHAPET 503
Query: 339 VFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVT 398
VF + +KP+ F GH ++LDLSWS++ LLS+S+DKTVRLW + CL++F H++YVT
Sbjct: 504 VFSLSDKPICSFTGHLDDVLDLSWSRSQLLLSSSMDKTVRLWDIETQSCLKLFAHNDYVT 563
Query: 399 CVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMG 458
CV FNP+D++YFISGS+D K+RIW + + VV+W D++++VTAVCY PDGQ VGS+ G
Sbjct: 564 CVQFNPLDEDYFISGSLDAKIRIWNISNRQVVEWNDLKEMVTAVCYTPDGQAAFVGSING 623
Query: 459 DCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN 518
CR Y+ D LE +I + +KKKA K+IT FQF P + S+V+V+ ADS++R+L G
Sbjct: 624 HCRLYSAEDCKLEQTNQIDLQNKKKAQAKKITAFQFSPINPSEVLVTSADSRIRVLDGTE 683
Query: 519 VIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEP--AHDQAKTIR--- 573
++ K++G + +Q++A +T D KHIV A EDS VY+W HEEP KT+
Sbjct: 684 LVQKFRGFKNMNSQMTASYTVDAKHIVCASEDSQVYVWK---HEEPRLGITGRKTVTMCT 740
Query: 574 SLERFTT-NASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFP 632
S E F + S+A+PW G+ G + P P + G++ P
Sbjct: 741 SYETFPCKDVSVAVPWNGVVKGEPPSTQHQSKRNPKKPSTTTTTPENTTTGKKSGLPPLP 800
Query: 633 K 633
K
Sbjct: 801 K 801
|
|
| TAIR|locus:2040731 AT2G37670 "AT2G37670" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 804 (288.1 bits), Expect = 2.6e-93, Sum P(3) = 2.6e-93
Identities = 192/455 (42%), Positives = 268/455 (58%)
Query: 166 PLMDEIVEKESSAAGKAERVKKRWFSRL--------RSLAC-VVDKQ-GEGERVRLNE-E 214
PLMD + K +S K+ R+ KR + L S++ V DK +G + +
Sbjct: 311 PLMD--LRKFNSYLSKSVRLSKRRGAALLKNIKGVAHSMSLRVADKDVSDGSTDSPKKGK 368
Query: 215 DAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVV 274
D + VKV K KELSAL+ QEIQAH+G++ T+KFS D YLAS G D V+
Sbjct: 369 DHKHGKANEWVKVRPTGKSYKELSALHMCQEIQAHEGAVWTIKFSQDAHYLASGGADRVI 428
Query: 275 RLWQVVEDERLT--EVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESAC 332
+W+V E E ++ E + I PS + N ++ ++K+K S RR +
Sbjct: 429 HVWEVQECELMSMNEGSLTPIHPSLCDSSGNEIT-----VVEKKKKGKGSSGRRHNHIPD 483
Query: 333 VVFPPK-VFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVF 391
V P+ VF +KP+ GH ILDLSWSK+ LLS+S+DKTVRLW + CL++F
Sbjct: 484 YVHVPETVFSFSDKPVCSLKGHLDAILDLSWSKSQLLLSSSMDKTVRLWDIETKTCLKLF 543
Query: 392 PHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGG 451
H++YVTC+ F+PVD+NYF+SGS+D K+RIW++ HVV+W D+ ++VTA CY PDGQG
Sbjct: 544 AHNDYVTCIQFSPVDENYFLSGSLDAKIRIWSIQDRHVVEWSDLHEMVTAACYTPDGQGA 603
Query: 452 IVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKR-ITGFQFLPQDSSKVMVSCADSQ 510
++GS G CR Y+ D L +I V S KK+ KR IT FQF P + S+V+V+ ADS+
Sbjct: 604 LIGSHKGICRAYDTEDCKLSQTNQIDVQSNKKSQAKRKITSFQFSPVNPSEVLVTSADSR 663
Query: 511 VRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAK 570
+RIL G VI K+KG R + +QLSA ++ DGK+I+ A EDS VY+W H +
Sbjct: 664 IRILDGSEVIHKFKGFRNTCSQLSASYSQDGKYIICASEDSQVYLWKNDFHRTRS---TL 720
Query: 571 TIRSLERF-TTNASIAIPWCGLKCGNAEKEP-QLH 603
T +S E F + S A+PW G G E P Q+H
Sbjct: 721 TTQSHEHFHCKDVSAAVPWHGHVRG--EPPPVQIH 753
|
|
| TAIR|locus:2028539 AT1G48870 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 625 (225.1 bits), Expect = 4.3e-74, Sum P(3) = 4.3e-74
Identities = 142/332 (42%), Positives = 188/332 (56%)
Query: 319 SILKSLRRTSE-----SACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASI 373
S+L S R E +A V+FP K F I E P E +GH+G++LDL+WS +N LLSAS
Sbjct: 232 SLLASFLRQQEPINQQAALVLFPQKAFHIEETPFQELYGHTGDVLDLAWSDSNLLLSASK 291
Query: 374 DKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV 433
DKTVRLWR G D CL VF H+NYVTCV FNPV+ N F SGSIDGK RIW + VV W
Sbjct: 292 DKTVRLWRTGCDQCLHVFHHNNYVTCVEFNPVNKNNFASGSIDGKARIWGLSEERVVAWT 351
Query: 434 DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQ 493
D+R ++A+ Y+P+G G +VG + G+CRFY + DN + +D +I + + RIT +
Sbjct: 352 DVRDSISAISYQPNGNGFVVGCITGNCRFYQILDNDVIMDEQILIRGRN-----RITAVE 406
Query: 494 FLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSD-GKHIVSAGEDSN 552
F P S K++VS DS+VRI +I K+K G Q SA F S GKHI+S
Sbjct: 407 FCPGSSEKILVSSEDSKVRIFDKTQMIHKFKAPSNFGRQSSASFVSSTGKHILSVRRGVG 466
Query: 553 VYMWNCIGHEEPAHDQAKTIRSLERF-TTNASIAIPWCGLKCGNAEKEPQLH-VSDDDSP 610
VY+WN P+ AK+ RS E F + S W + E ++ V+ DD
Sbjct: 467 VYLWN--NDAFPSRKGAKSSRSFEYFHSPGVSAVAAW-------TQPETKVSKVAGDDEE 517
Query: 611 ENLAFAPARFSLGQEYVFESFPKGCATWPEEK 642
+ S G+ + S + ATWPEEK
Sbjct: 518 SRRVMRKIQSS-GR--LSRSC-RVTATWPEEK 545
|
|
| UNIPROTKB|Q5JSH3 WDR44 "WD repeat-containing protein 44" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 487 (176.5 bits), Expect = 7.8e-45, Sum P(2) = 7.8e-45
Identities = 138/449 (30%), Positives = 233/449 (51%)
Query: 159 ENTSELLPLMDEIVEKESSAAGKAERVKKRWFSRLRSLACVVDKQGEGERVRLNEEDAMF 218
+ T++L + + V++ A AE +R ++++S+ V + + ++E +
Sbjct: 423 QKTTQLKKFLGKSVKR---AKHLAEEYGERAINKVKSVRDEVFHTDQDDPSSSDDEGMPY 479
Query: 219 CSKVQRVKVYHCKKRSKELSALYKGQEIQA-HDGSILTMKFSPDGQYLASAGDDGVVRLW 277
V + K H K + + Q++ H G++ TMKFS G+ LASAG D VVR+W
Sbjct: 480 TRPV-KFKAAHGFKGPYDFDQIKVVQDLSGEHMGAVWTMKFSHCGRLLASAGQDNVVRIW 538
Query: 278 QVVED-ERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFP 336
+ + + + Y T +S P +E +S KS T +
Sbjct: 539 ALKNAFDYFNNMRMK-------YNTEGRVSP-SP---SQESLSSSKSDTDTGVCSGTDED 587
Query: 337 P--KVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHS 394
P K ++P ++ GH+ ++LDLSWSKN +LLS+S+DKTVRLW + CL F H
Sbjct: 588 PDDKNAPFRQRPFCKYKGHTADLLDLSWSKNYFLLSSSMDKTVRLWHISRRECLCCFQHI 647
Query: 395 NYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDI---RQIVTAVCYRPDGQGG 451
++VT + F+P DD YF+SGS+DGK+R+W + V W ++ +++TA + +G+
Sbjct: 648 DFVTAIAFHPRDDRYFLSGSLDGKLRLWNIPDKKVALWNEVDGQTKLITAANFCQNGKYA 707
Query: 452 IVGSMMGDCRFYNVSDNHLELDAEICVHSKK--KAPCKRITGFQFLPQDSSKVMVSCADS 509
++G+ G C FY+ HL+ +I V S + ++ITG + LP ++ K++V+ DS
Sbjct: 708 VIGTYDGRCIFYDTE--HLKYHTQIHVRSTRGRNKVGRKITGIEPLPGEN-KILVTSNDS 764
Query: 510 QVRI--LQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHD 567
++R+ L+ ++ KYKG S +Q+ A F+ D ++VS ED VY+W+ HD
Sbjct: 765 RIRLYDLRDLSLSMKYKGYVNSSSQIKASFSHDFTYLVSGSEDKYVYIWSTY------HD 818
Query: 568 QAKTIRSLERFTTNASIAIPWCGLKCGNA 596
+K S+ R + W G+K NA
Sbjct: 819 LSK-FTSVRRDRNDF-----WEGIKAHNA 841
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 701 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-30 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-24 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 3e-24 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 5e-19 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-17 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 9e-12 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 9e-10 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 4e-08 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 6e-08 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 2e-07 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 3e-07 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 6e-07 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 8e-07 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 1e-06 | |
| pfam04762 | 903 | pfam04762, IKI3, IKI3 family | 0.003 | |
| PLN00181 | 793 | PLN00181, PLN00181, protein SPA1-RELATED; Provisio | 0.003 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 2e-30
Identities = 65/327 (19%), Positives = 131/327 (40%), Gaps = 53/327 (16%)
Query: 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVN 303
+ ++ H G + + FSPDG+ LA+ DG +++W + E +
Sbjct: 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE-------------LLRTLKG 49
Query: 304 HLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRI-LEKPLHEFHGHSGEILDLSW 362
H ++ D + L S + +++ + + + GH+ + +++
Sbjct: 50 HTGPVR----DVAASADGTYLASGSSDKTI----RLWDLETGECVRTLTGHTSYVSSVAF 101
Query: 363 SKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVR 420
S + L S+S DKT+++W V CL H+++V V F+P D + S S DG ++
Sbjct: 102 SPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSP-DGTFVASSSQDGTIK 160
Query: 421 IWAVLSCHVV-------DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELD 473
+W + + V V +V + PDG+ + S G + +++S
Sbjct: 161 LWDLRTGKCVATLTGHTGEV------NSVAFSPDGEKLLSSSSDGTIKLWDLST-----G 209
Query: 474 AEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCA-DSQVRI--LQGPNVIGKYKGLRRSG 530
+ + + F P ++ S + D +R+ L+ + G S
Sbjct: 210 KCLGTLRGHENG---VNSVAFSP--DGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSV 264
Query: 531 NQLSACFTSDGKHIVSAGEDSNVYMWN 557
S ++ DGK + S D + +W+
Sbjct: 265 T--SLAWSPDGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 3e-24
Identities = 62/244 (25%), Positives = 101/244 (41%), Gaps = 40/244 (16%)
Query: 344 EKPLHEFHGHSGEILDLSWSKN-NYLLSASIDKTVRLWRVGNDHCLRVF-PHSNYVTCVH 401
+ L GH+G + D++ S + YL S S DKT+RLW + C+R H++YV+ V
Sbjct: 41 GELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVA 100
Query: 402 FNPVDDNYFISGSIDGKVRIW--------AVLSCHVVDWVDIRQIVTAVCYRPDGQGGIV 453
F+P D S S D +++W L H DW V +V + PDG
Sbjct: 101 FSP-DGRILSSSSRDKTIKVWDVETGKCLTTLRGH-TDW------VNSVAFSPDGTFVAS 152
Query: 454 GSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRI 513
S G + +++ + A + H+ + F P D K++ S +D +++
Sbjct: 153 SSQDGTIKLWDLRT--GKCVATLTGHT------GEVNSVAFSP-DGEKLLSSSSDGTIKL 203
Query: 514 --LQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWN---------CIGHE 562
L +G +G N S F+ DG + S ED + +W+ GH
Sbjct: 204 WDLSTGKCLGTLRGHENGVN--SVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHT 261
Query: 563 EPAH 566
Sbjct: 262 NSVT 265
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 106 bits (264), Expect = 3e-24
Identities = 78/382 (20%), Positives = 149/382 (39%), Gaps = 37/382 (9%)
Query: 241 YKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYF 300
++ H+ SI ++ FSPDG+ L S DG ++LW + E+L +
Sbjct: 56 LSSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKS-----------L 104
Query: 301 TVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDL 360
H S + L + + + + + ++ K + GHS + L
Sbjct: 105 EGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLS---TPGKLIRTLEGHSESVTSL 161
Query: 361 SWSKNNYLL--SASIDKTVRLWRVGNDHCLRVF-PHSNYVTCVHFNPVDDNYFISGSIDG 417
++S + LL +S+D T++LW + L H++ V+ + F+P SGS DG
Sbjct: 162 AFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDG 221
Query: 418 KVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEI 476
+R+W + + ++ + + PDG GS G R +++ + L +
Sbjct: 222 TIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLL-RTL 280
Query: 477 CVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRI--LQGPNVIGKYKGLRRSGNQLS 534
HS + F P D + +D VR+ L+ ++ G S
Sbjct: 281 SGHS------SSVLSVAFSP-DGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSS 333
Query: 535 ACFTSDGKHIVSAG-EDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKC 593
F+ DG +VS G +D + +W+ K +++LE + S++ G
Sbjct: 334 LSFSPDGSLLVSGGSDDGTIRLWDL--------RTGKPLKTLEGHSNVLSVSFSPDGRVV 385
Query: 594 GNAEKEPQLHVSDDDSPENLAF 615
+ + + + D + L
Sbjct: 386 SSGSTDGTVRLWDLSTGSLLRN 407
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 90.1 bits (222), Expect = 5e-19
Identities = 76/347 (21%), Positives = 130/347 (37%), Gaps = 44/347 (12%)
Query: 220 SKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGD-DGVVRLWQ 278
S VK++ K + ++ H S+ ++ FSPDG+ LAS DG ++LW
Sbjct: 131 SLDGTVKLWDLSTPGKLIR------TLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWD 184
Query: 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPK 338
+ + L+ + S + S L S S+
Sbjct: 185 LRTGKPLSTLAGHTDPVSSL------------------AFSPDGGLLIASGSSDGTIRLW 226
Query: 339 VFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCL--RVFPHSNY 396
+ GHS ++ + L S S D T+RLW + + L + HS+
Sbjct: 227 DLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSS 286
Query: 397 VTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQI---VTAVCYRPDGQGGIV 453
V V F+P D SGS DG VR+W + + ++ + ++ V+++ + PDG +
Sbjct: 287 VLSVAFSP-DGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVS 345
Query: 454 GSMM-GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSC-ADSQV 511
G G R +++ E HS + F P +V+ S D V
Sbjct: 346 GGSDDGTIRLWDLRTGKPLKTLEG--HS-------NVLSVSFSP--DGRVVSSGSTDGTV 394
Query: 512 RILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNC 558
R+ + S F+ DGK + S D+ + +W+
Sbjct: 395 RLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDL 441
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 82.8 bits (205), Expect = 2e-17
Identities = 50/235 (21%), Positives = 90/235 (38%), Gaps = 30/235 (12%)
Query: 346 PLHEFHGHSGEILDLSWS-KNNYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFN 403
GH+G + +++S L + S D T+++W + LR H+ V V +
Sbjct: 1 LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60
Query: 404 PVDDNYFISGSIDGKVRIWAVLSCHVVD-WVDIRQIVTAVCYRPDGQGGIV--GSMMGDC 460
D Y SGS D +R+W + + V V++V + PDG+ I+ S
Sbjct: 61 A-DGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGR--ILSSSSRDKTI 117
Query: 461 RFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRI--LQGPN 518
+ ++V + + F P D + V S D +++ L+
Sbjct: 118 KVWDVETG----KCLTTLRGHTDW----VNSVAFSP-DGTFVASSSQDGTIKLWDLRTGK 168
Query: 519 VIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWN---------CIGHEEP 564
+ G N S F+ DG+ ++S+ D + +W+ GHE
Sbjct: 169 CVATLTGHTGEVN--SVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENG 221
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 67.4 bits (163), Expect = 9e-12
Identities = 50/225 (22%), Positives = 86/225 (38%), Gaps = 28/225 (12%)
Query: 219 CSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQ 278
S ++++ + S L L H S+L++ FSPDG+ LAS DG VRLW
Sbjct: 259 GSSDGTIRLWDLRSSSSLLRTLSG------HSSSVLSVAFSPDGKLLASGSSDGTVRLW- 311
Query: 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPK 338
D+ H + +S +
Sbjct: 312 ----------DLETGKLLSSLTLKGHEGPVS-------SLSFSPDGSLLVSGGSDDGTIR 354
Query: 339 VFRILEKPLHEFHGHSGEILDLSWSKNNYLLS-ASIDKTVRLWRVGNDHCLRVFP-HSNY 396
++ + + +L +S+S + ++S S D TVRLW + LR H++
Sbjct: 355 LWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSR 414
Query: 397 VTCVHFNPVDDNYFISGSIDGKVRIWAVLSC-HVVDWVDIRQIVT 440
VT + F+P D SGS D +R+W + + V + +++
Sbjct: 415 VTSLDFSP-DGKSLASGSSDNTIRLWDLKTSLKSVSFSPDGKVLA 458
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 9e-10
Identities = 33/152 (21%), Positives = 57/152 (37%), Gaps = 31/152 (20%)
Query: 236 ELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDP 295
+L + H G + ++ FSPDG+ L S+ DG ++LW D+
Sbjct: 163 DLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLW-----------DLSTGKC 211
Query: 296 SCIYF----TVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRIL-EKPLHEF 350
VN ++ F + S T +V+ + + +
Sbjct: 212 LGTLRGHENGVNSVA-----FSPDGYLLASGSEDGTI---------RVWDLRTGECVQTL 257
Query: 351 HGHSGEILDLSWSKN-NYLLSASIDKTVRLWR 381
GH+ + L+WS + L S S D T+R+W
Sbjct: 258 SGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 4e-08
Identities = 16/34 (47%), Positives = 25/34 (73%)
Query: 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLW 277
+ ++ H G + ++ FSPDG+YLAS DDG ++LW
Sbjct: 6 KTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 6e-08
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLW 277
+ ++ H G + ++ FSPDG LAS DDG VR+W
Sbjct: 5 RTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38
|
Length = 39 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 2e-07
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 344 EKPLHEFHGHSGEILDLSWSKN-NYLLSASIDKTVRLW 380
K L GH+G + +++S + N L S S D TVR+W
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 3e-07
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 345 KPLHEFHGHSGEILDLSWSKN-NYLLSASIDKTVRLW 380
+ L GH+G + +++S + YL S S D T++LW
Sbjct: 3 ELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 6e-07
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 386 HCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIW 422
L+ H+ VT V F+P D Y SGS DG +++W
Sbjct: 3 ELLKTLKGHTGPVTSVAFSP-DGKYLASGSDDGTIKLW 39
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.6 bits (122), Expect = 8e-07
Identities = 44/214 (20%), Positives = 89/214 (41%), Gaps = 21/214 (9%)
Query: 353 HSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFIS 412
+S +L L S++ LL A + + L + + L + H + +T + F+P D +S
Sbjct: 26 NSLSLLSLGSSESGILLLALLSDS--LVSLPDLSSLLLRGHEDSITSIAFSP-DGELLLS 82
Query: 413 GSIDGKVRIWAVLS----CHVVDWVDIRQIVTAVCYRPDGQGGIV--GSMMGDCRFYNVS 466
GS DG +++W + + ++ + + PDG ++ S+ G + +++S
Sbjct: 83 GSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLS 142
Query: 467 DNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRI--LQGPNVIGKYK 524
+L + HS + +T F P S D +++ L+ +
Sbjct: 143 TP-GKLIRTLEGHS------ESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLA 195
Query: 525 GLRRSGNQLSACFTSDGK-HIVSAGEDSNVYMWN 557
G + L+ F+ DG I S D + +W+
Sbjct: 196 GHTDPVSSLA--FSPDGGLLIASGSSDGTIRLWD 227
|
Length = 466 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 1e-06
Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 387 CLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIW 422
LR H+ VT V F+P D N SGS DG VR+W
Sbjct: 3 LLRTLKGHTGPVTSVAFSP-DGNLLASGSDDGTVRVW 38
|
Length = 39 |
| >gnl|CDD|218251 pfam04762, IKI3, IKI3 family | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.003
Identities = 18/82 (21%), Positives = 36/82 (43%), Gaps = 12/82 (14%)
Query: 356 EILDLSWSKNNYLLSASIDKTVRLWRVGNDH----CLRVFPHSNYVTCVHFNPVDDNYFI 411
+++ L W+ ++ +L+ S++ V+LW GN H FP S V ++P
Sbjct: 291 KVISLEWNSDSEVLAVSLEDRVQLWTTGNYHWYLKQELRFPESAGVAFFKWDPEKPLTLH 350
Query: 412 SGSIDGKVRIWAVLSCHVVDWV 433
+ G++ +VD+
Sbjct: 351 VLTESGQI--------LIVDFA 364
|
Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation. This region contains WD40 like repeats. Length = 903 |
| >gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (94), Expect = 0.003
Identities = 56/229 (24%), Positives = 98/229 (42%), Gaps = 52/229 (22%)
Query: 265 LASAGDDGVVRLWQVVEDERLTE----------VDIPEIDPSCIYFTVNHLSELKPLFMD 314
+AS+ +GVV++W V + +TE +D DP+ + + S L+
Sbjct: 548 VASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSV--KLWSI 605
Query: 315 KEKISILKSLRRTSESACVVFPPKVFRIL-----------------EKPLHEFHGHSGEI 357
+ +SI +++ + CV FP + R L + PL GHS +
Sbjct: 606 NQGVSI-GTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTV 664
Query: 358 LDLSWSKNNYLLSASIDKTVRLWRVG------NDHCLRVFP-HSNYVTCVHFNPVDDNYF 410
+ + ++ L+S+S D T++LW + N+ L F H+N V + V D Y
Sbjct: 665 SYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLS-VSDGYI 723
Query: 411 ISGSIDGKVRIW------AVLS--CHVVDWV------DIRQIVTAVCYR 445
+GS +V ++ VLS +D V D Q +++VC+R
Sbjct: 724 ATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWR 772
|
Length = 793 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 701 | |||
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.98 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.98 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.98 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.97 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.97 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.97 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.97 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.97 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.97 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.97 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.97 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.97 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.97 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.97 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.97 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.97 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.97 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.97 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.97 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.97 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.97 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.97 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.96 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.96 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.96 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.96 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.96 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.96 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.96 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.96 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.95 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.95 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.95 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.95 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.95 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.95 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.95 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.95 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.95 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.95 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.95 | |
| PTZ00421 | 493 | coronin; Provisional | 99.95 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.95 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.94 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.94 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.94 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.94 | |
| PTZ00420 | 568 | coronin; Provisional | 99.94 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.94 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.94 | |
| PTZ00421 | 493 | coronin; Provisional | 99.94 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.94 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.94 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.94 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.93 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.93 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.93 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.93 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.93 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.93 | |
| PTZ00420 | 568 | coronin; Provisional | 99.93 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.93 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.93 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.93 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.92 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.92 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.92 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.92 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.92 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.92 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.92 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.92 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.92 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.91 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.91 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.91 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.91 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.91 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.91 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.91 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.91 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.91 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.9 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.9 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.9 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.89 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.89 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.89 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.89 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.89 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.89 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.89 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.89 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.88 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.88 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.88 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.88 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.88 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.88 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.88 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.88 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.87 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.87 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.87 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.86 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.85 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.85 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.85 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.85 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.85 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.85 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.84 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.84 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.84 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.84 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.84 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.83 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.83 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.83 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.83 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.82 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.82 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.82 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.81 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.81 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.8 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.79 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.79 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.78 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.78 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.78 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.78 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.77 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.77 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.77 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.76 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.74 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.74 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.74 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.74 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.73 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.73 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.72 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.72 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.71 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.71 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.71 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.7 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.7 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.7 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.7 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.7 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.68 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.68 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.67 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.67 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.66 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.66 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.65 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.65 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.65 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.64 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.64 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.64 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.63 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.61 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.61 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.6 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.58 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.57 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.57 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.57 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.56 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.54 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.54 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.52 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.5 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.5 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.48 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.48 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.48 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.46 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.45 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.45 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.45 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.43 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.43 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.42 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.41 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.4 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.38 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.38 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.36 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.36 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.36 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.35 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.35 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.34 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.32 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.31 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.31 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.29 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.29 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.29 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.27 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.27 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.24 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.23 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.23 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.22 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.2 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.19 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.18 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.17 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.17 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.16 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.15 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.11 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 99.11 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.1 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.09 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.05 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.05 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.02 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.01 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.98 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.98 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.97 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 98.97 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.96 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.95 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.95 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.91 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.91 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.9 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 98.89 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 98.88 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.84 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 98.84 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.8 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.78 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.77 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.76 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.76 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 98.71 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.71 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.7 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.69 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.65 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.63 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.63 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.61 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 98.61 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.61 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.6 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.58 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.55 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.54 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.52 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.47 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.47 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.44 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.42 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.4 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.39 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.38 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.38 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.37 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.34 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.24 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.24 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.24 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.2 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.16 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.16 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.14 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.11 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.11 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.1 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.06 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.02 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.0 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 98.0 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.99 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 97.96 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.96 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 97.96 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.96 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 97.92 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 97.92 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.91 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.9 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.88 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 97.87 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.84 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 97.84 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 97.83 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 97.83 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 97.8 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.66 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.63 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.63 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.5 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 97.5 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.41 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.37 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 97.35 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.29 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 97.26 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.18 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.15 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 97.13 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.1 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 97.05 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.03 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 96.98 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 96.95 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 96.89 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 96.88 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 96.87 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 96.86 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 96.79 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 96.76 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 96.72 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 96.71 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 96.7 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 96.67 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 96.66 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 96.57 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.54 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 96.52 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 96.49 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 96.48 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 96.35 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 96.29 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 96.29 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 96.26 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 96.21 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 95.98 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.94 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 95.9 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 95.89 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 95.88 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 95.68 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 95.65 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 95.49 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 95.45 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 95.43 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 95.35 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 95.3 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 95.27 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 95.22 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 95.05 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 95.01 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 94.95 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 94.93 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 94.81 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 94.69 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 94.67 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 94.59 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 94.54 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 94.53 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 94.53 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 94.51 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 94.46 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 94.4 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 94.38 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 94.33 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 94.29 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 94.25 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 94.14 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 93.43 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 93.42 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 93.33 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 93.32 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 93.26 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 93.16 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 92.9 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 92.39 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 92.35 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 92.31 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 92.25 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 92.24 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 91.74 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 91.58 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 91.17 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 91.13 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 90.56 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 90.16 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 90.0 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 89.62 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 89.57 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 89.16 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 88.89 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 88.45 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 88.42 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 88.34 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 87.59 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 87.56 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 87.52 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 87.3 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 86.97 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 86.72 | |
| PF11635 | 753 | Med16: Mediator complex subunit 16; InterPro: IPR0 | 86.62 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 86.54 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 86.09 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 86.04 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 85.8 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 84.67 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 84.21 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 83.98 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 83.93 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 83.54 | |
| PRK10115 | 686 | protease 2; Provisional | 83.5 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 83.5 | |
| KOG1898 | 1205 | consensus Splicing factor 3b, subunit 3 [RNA proce | 81.61 | |
| PLN02193 | 470 | nitrile-specifier protein | 80.28 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 80.19 |
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-74 Score=611.94 Aligned_cols=649 Identities=43% Similarity=0.725 Sum_probs=471.4
Q ss_pred CCCcccccccccccccCCCCCCCCCCcCCCCCCccccccccCCCcHHHHHHHHHhhhcCCC-CCCCCCCCCCC-CCCCCc
Q 005352 6 EDEECPFFDASEDIASISGATSDSNDMFDSYYGFNSEVWVRTPKSVKERRSKFLDWMEAGL-DGLSGNKPVDM-GSFGGE 83 (701)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~ 83 (701)
+||||+||||.|++++ . |+||+..|+||.|||+|||++|||+. +.+.+..+... .....+
T Consensus 6 ~ee~~~f~~~~~~~~~----------------~--~~~w~~~p~sv~err~~~l~~mgls~~~~~~~~~~~~~~~~~~~~ 67 (712)
T KOG0283|consen 6 EEEEDRFFDASERVSP----------------D--YDLWTSSPGSVSERRRKFLNGMGLSSKKTLSRSETVDRLSSSSVE 67 (712)
T ss_pred ccccccccccccccCc----------------c--hhhhhcCccchhHHHHHHhhhhccccccccccccccccccccccc
Confidence 3555999999999972 1 99999999999999999999999996 34444333211 000001
Q ss_pred cccccccccccccccccccccccccccccccCCCCCCCCCCCCCcccCcCCCcceEEeccCCC-Cc-----cccccceE-
Q 005352 84 DDGLCKSSGAVLRIAGIEEEFRSIRSVRSGRSNDNVELPEENFPCKDGNYDREMACDVDQMGP-DG-----QISNCREI- 156 (701)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~- 156 (701)
+... .++-.+.++...+ ++..++.++ ..+- ..-..+.. .+.+.+++|++..+ ++ +++++..+
T Consensus 68 ~~~~------~~~~~~v~~~~~~-~~~~~~~~s-~~~~-~~~~~~~~--~~~~~e~~v~e~~~~~~~~~~sd~~~~~~~~ 136 (712)
T KOG0283|consen 68 SNVD------ESNHNSVEDTDSE-QCRPSSSSS-KSRV-SQSSSSIE--LDTGDEFSVSENPEDGSVNRLSDVGTGASST 136 (712)
T ss_pred cccc------ccccccccccccc-cCCcccccc-cccc-ccccccee--ecccceeeEeeccCccccccccCCCcccccc
Confidence 1000 0000011111111 111110000 0000 00000111 35555666677644 22 45554444
Q ss_pred --EEEEecccchhhHHHHHhhccc-----------------hhhHHHHHHhHHhhhccceeeecccCcce--eeecCcc-
Q 005352 157 --YLENTSELLPLMDEIVEKESSA-----------------AGKAERVKKRWFSRLRSLACVVDKQGEGE--RVRLNEE- 214 (701)
Q Consensus 157 --~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~- 214 (701)
+++...+..+.++++++++... ..+-+|..+.|++.++.+++......+.. ....+..
T Consensus 137 ~e~~e~~~g~~~~v~~l~~~~~~~~~~~~~~~~~~~s~s~~~~~~~r~~~~~l~~~k~~~~~~s~~~~~~~~~~~~d~~~ 216 (712)
T KOG0283|consen 137 LEELESSPGESSRVKELGDRENADLDEMLTKYNDDVSGSVLLRKSKRYGKRWLKSLKVVAHSLSSLSENRRSRFDSDSSS 216 (712)
T ss_pred cccccCCcCcccchhhhhhhcccccchhhcccccccccccccchhhhhhhhhhhhccccccccccccccccccccccchh
Confidence 6777777788888887755432 12245556668899888777665331111 1000000
Q ss_pred ----cc--ccc--------cccceEEEEEccCccchhhhcccCceec-cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEe
Q 005352 215 ----DA--MFC--------SKVQRVKVYHCKKRSKELSALYKGQEIQ-AHDGSILTMKFSPDGQYLASAGDDGVVRLWQV 279 (701)
Q Consensus 215 ----~~--~~~--------~~d~~v~vw~~~~~~~~~~~~~~~~~l~-~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~ 279 (701)
++ ..+ .....+++....+..+++..++..|+++ +|++.|++|+||+||+|||+||+||.|+||.+
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~rvkv~~~~K~~kelsal~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkV 296 (712)
T KOG0283|consen 217 QFHNYLSEPKSSKDKEMKYNLPSRVKVRHYKKSPKELSALTVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKV 296 (712)
T ss_pred cccccccccccccccccccCCcceEEecccCCCcccceeeEEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEE
Confidence 00 111 1126789999999999999999999999 99999999999999999999999999999999
Q ss_pred ecCeeeeeecCCCCCCceeEEeeccCCCcceeeecc-ccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeE
Q 005352 280 VEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDK-EKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEIL 358 (701)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~ 358 (701)
...+. .........++++..+....+.++.... .........+......++.++.+.+.+.++|++.|.||.+.|+
T Consensus 297 ie~e~---~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DIL 373 (712)
T KOG0283|consen 297 IESER---MRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADIL 373 (712)
T ss_pred eccch---hcccccccchhhhhhhhccccCccccccccccccccccccccCCccccCCCccccccccchhhhhccchhhe
Confidence 88654 3344455566666655555555554444 2222333344455555589999999999999999999999999
Q ss_pred EEEEecCCeEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCc
Q 005352 359 DLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQI 438 (701)
Q Consensus 359 ~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~ 438 (701)
+|.|+.+++|+++|+|+||+||++...+|++.|.|.+.|+|++|+|.|++||++|+.||+||||++...+++.|.+.+..
T Consensus 374 DlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~l 453 (712)
T KOG0283|consen 374 DLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDL 453 (712)
T ss_pred ecccccCCeeEeccccccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeC--
Q 005352 439 VTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQG-- 516 (701)
Q Consensus 439 i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~-- 516 (701)
|+++||.|+|++.++|+.+|.|++|++...++.....+..+..++....+|++++|.|.+...+++.+.|.+|||||+
T Consensus 454 ITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~ 533 (712)
T KOG0283|consen 454 ITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRD 533 (712)
T ss_pred heeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccc
Confidence 999999999999999999999999999999999999999988887777799999999988888999999999999999
Q ss_pred CccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCC-CCccccccccccccccC-CceEEecCCCCCCC
Q 005352 517 PNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEE-PAHDQAKTIRSLERFTT-NASIAIPWCGLKCG 594 (701)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~-~~~~~~~~~~~~~~~~~-~~~~a~~~~~~~~~ 594 (701)
..+..+|++..........+|+.||++|++|++|..||||++..... ......+.+++++.|.+ ..+++++|.|....
T Consensus 534 ~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~~~~~~~~~~~~~s~e~f~s~~vs~a~~w~g~~~~ 613 (712)
T KOG0283|consen 534 KDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSFNSEASHKKTKSIRSYEHFSSVDVSVAIPWPGFHAH 613 (712)
T ss_pred hhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCCccccccccccccccccccccccccccccccccccc
Confidence 78899999988888899999999999999999999999999876543 23455778999999999 99999999998765
Q ss_pred CCCCCCccccCCCCCCCccccCCCccccCccccccC-----CCCcccCCCCccCCCCccccccccchhhhhhhhhccccc
Q 005352 595 NAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFES-----FPKGCATWPEEKLPALSQLSSASALHKSQYKFLKSSCLC 669 (701)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s-----~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 669 (701)
+............ ..| ...+...+ .++...+|+++++...... ......++++..+.+..
T Consensus 614 n~ss~~p~~~~~~-------~~~-----~~~~~~s~~~~~~~~~~s~t~~e~~~~~s~~~---~~~~~~~~~~~~S~~~~ 678 (712)
T KOG0283|consen 614 NPSSNLPPLIKAA-------LRP-----VNEFKLSSPMRSLNSRGSATWPEEKLLDSPGA---SASSRSSIKFLMSGCQR 678 (712)
T ss_pred cccccCCCCcccc-------cCc-----ccccccCCccccccccccccCcccccccccCc---ccccccccccccCCCcc
Confidence 4211111110000 111 11122111 2367789999988754321 12233334455555543
Q ss_pred cc--ccCCCccEEEEecCCCeEeEEeecCCCcCC
Q 005352 670 TT--SSHAWGLVIVTAGWDGRIRSFLNYGLPIPV 701 (701)
Q Consensus 670 ~~--~~~~~g~~ivTgg~DG~Irvw~~~g~p~~~ 701 (701)
.. .+++||++|+||+++|.||+|+|||||+++
T Consensus 679 ~~~~~~~~wg~vivTs~~~g~Ir~~~n~glp~~~ 712 (712)
T KOG0283|consen 679 SSSSSPHAWGMVIVTSTLDGQIRCFQNYGLPRRV 712 (712)
T ss_pred ccccccCCCcceeeeccccceEEEEEecCCCCCC
Confidence 32 257899999999999999999999999985
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-44 Score=349.71 Aligned_cols=351 Identities=20% Similarity=0.282 Sum_probs=288.2
Q ss_pred cccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeE
Q 005352 220 SKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIY 299 (701)
Q Consensus 220 ~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~ 299 (701)
..+....||.-..-.+......+...+.||.++|.|++|+|+|.+||||+.|.++|+||+.+.
T Consensus 85 te~~l~lvyqpqavfrvrpvtrCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~Te----------------- 147 (480)
T KOG0271|consen 85 TEDVLTLVYQPQAVFRVRPVTRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTE----------------- 147 (480)
T ss_pred hhheeeEEeccchhhcccccceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCC-----------------
Confidence 334445666543322223334556678999999999999999999999999999999999875
Q ss_pred EeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEE
Q 005352 300 FTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVR 378 (701)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~ 378 (701)
.|+++.++|...|.|++|+||+ .|++|+.||+|+
T Consensus 148 ---------------------------------------------Tp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~ 182 (480)
T KOG0271|consen 148 ---------------------------------------------TPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIR 182 (480)
T ss_pred ---------------------------------------------CcceeecCCccEEEEEEECCCcchhhccccCCeEE
Confidence 5778889999999999999999 999999999999
Q ss_pred EEECCCCeeeee-ec-CCCCeEEEEEeeC----CCCEEEEEEcCCcEEEEeCCCCcEE-EEecCCCcEEEEEEeeCCCeE
Q 005352 379 LWRVGNDHCLRV-FP-HSNYVTCVHFNPV----DDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGG 451 (701)
Q Consensus 379 iWd~~~~~~~~~-~~-h~~~V~~l~f~p~----~~~~l~sgs~dg~v~iwd~~~~~~~-~~~~~~~~i~~i~~sp~g~~l 451 (701)
+||..+++++.. +. |...|++++|.|. ...+|++++.||.|+|||+..++++ ...+|..+|+|++|--+| +|
T Consensus 183 lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-li 261 (480)
T KOG0271|consen 183 LWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LI 261 (480)
T ss_pred EecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eE
Confidence 999999987654 33 9999999999873 4568999999999999999998877 566899999999998655 89
Q ss_pred EEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEe-----------------------------------c
Q 005352 452 IVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFL-----------------------------------P 496 (701)
Q Consensus 452 ~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~-----------------------------------p 496 (701)
++|+.|++|++|+...+.+.. ....|...|+.++++ +
T Consensus 262 ySgS~DrtIkvw~a~dG~~~r--------~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~ 333 (480)
T KOG0271|consen 262 YSGSQDRTIKVWRALDGKLCR--------ELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLK 333 (480)
T ss_pred EecCCCceEEEEEccchhHHH--------hhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhc
Confidence 999999999999998865432 234566667776665 1
Q ss_pred CCCCEEEEEECCCcEEEEeCCccc-eeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCCCCcccccccccc
Q 005352 497 QDSSKVMVSCADSQVRILQGPNVI-GKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSL 575 (701)
Q Consensus 497 ~~~~~l~~~s~dg~I~iwd~~~~~-~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~ 575 (701)
+.+..+++|+.|.++.+|+..... ..-+..+|..-|+.+.||||++|||+++-|..|++|+-.+++.... +
T Consensus 334 ~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~las--------f 405 (480)
T KOG0271|consen 334 DSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLAS--------F 405 (480)
T ss_pred cCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhh--------h
Confidence 234569999999999999976544 3334456999999999999999999999999999999999883211 1
Q ss_pred ccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCCcccCCCCccCCCCccccccccc
Q 005352 576 ERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLSSASAL 655 (701)
Q Consensus 576 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~~~~~ 655 (701)
..+-..+..++|+.+ .+.++++|.|.++++|+..+......+++|
T Consensus 406 ----------------------------RGHv~~VYqvawsaD----sRLlVS~SkDsTLKvw~V~tkKl~~DLpGh--- 450 (480)
T KOG0271|consen 406 ----------------------------RGHVAAVYQVAWSAD----SRLLVSGSKDSTLKVWDVRTKKLKQDLPGH--- 450 (480)
T ss_pred ----------------------------hhccceeEEEEeccC----ccEEEEcCCCceEEEEEeeeeeecccCCCC---
Confidence 001224555667776 678899999999999999999988999988
Q ss_pred hhhhhhhhhcccccccccCCCccEEEEecCCCeEeEEe
Q 005352 656 HKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFL 693 (701)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~g~~ivTgg~DG~Irvw~ 693 (701)
..+|+++.++++ |..+++||.|..+|+|.
T Consensus 451 --------~DEVf~vDwspD-G~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 451 --------ADEVFAVDWSPD-GQRVASGGKDKVLRLWR 479 (480)
T ss_pred --------CceEEEEEecCC-CceeecCCCceEEEeec
Confidence 579999999999 99999999999999996
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-41 Score=324.61 Aligned_cols=322 Identities=20% Similarity=0.315 Sum_probs=268.5
Q ss_pred ecccCcceeeec--CccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEE
Q 005352 200 VDKQGEGERVRL--NEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLW 277 (701)
Q Consensus 200 ~~~~~~~~~~~~--~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iW 277 (701)
..|.+.+.++++ .+..+++|+.|.++|+||+..... ..+.++|...|.|++|+|||+.||+|+.||.|++|
T Consensus 112 ~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp-------~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lw 184 (480)
T KOG0271|consen 112 AGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETP-------LFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLW 184 (480)
T ss_pred CCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCc-------ceeecCCccEEEEEEECCCcchhhccccCCeEEEe
Confidence 356666666554 557899999999999999765432 23578899999999999999999999999999999
Q ss_pred EeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCe
Q 005352 278 QVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEI 357 (701)
Q Consensus 278 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I 357 (701)
|..+++. ....|.+|+..|
T Consensus 185 dpktg~~-------------------------------------------------------------~g~~l~gH~K~I 203 (480)
T KOG0271|consen 185 DPKTGQQ-------------------------------------------------------------IGRALRGHKKWI 203 (480)
T ss_pred cCCCCCc-------------------------------------------------------------ccccccCcccce
Confidence 9988862 234578999999
Q ss_pred EEEEEecC-----C-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEE
Q 005352 358 LDLSWSKN-----N-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV 430 (701)
Q Consensus 358 ~~l~~s~~-----~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~ 430 (701)
++|+|.|- . +|++++.||+|+|||+..+.++..+. |+.+|+|+.|- ...+|++|+.|++|++|+...+.+.
T Consensus 204 t~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwG--G~gliySgS~DrtIkvw~a~dG~~~ 281 (480)
T KOG0271|consen 204 TALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWG--GEGLIYSGSQDRTIKVWRALDGKLC 281 (480)
T ss_pred eEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEc--CCceEEecCCCceEEEEEccchhHH
Confidence 99999873 2 89999999999999999999998876 99999999996 4679999999999999999998877
Q ss_pred -EEecCCCcEEEEEEe-----------eCCC-------------------------eEEEEecCCcEEEEECCCCeeeee
Q 005352 431 -DWVDIRQIVTAVCYR-----------PDGQ-------------------------GGIVGSMMGDCRFYNVSDNHLELD 473 (701)
Q Consensus 431 -~~~~~~~~i~~i~~s-----------p~g~-------------------------~l~~gs~dg~v~i~d~~~~~~~~~ 473 (701)
.+.+|...|+.++.+ |.++ .|++|+.|.++.+|+....+.
T Consensus 282 r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kk--- 358 (480)
T KOG0271|consen 282 RELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKK--- 358 (480)
T ss_pred HhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccccccc---
Confidence 566788888888776 3333 499999999999999865542
Q ss_pred eeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcE
Q 005352 474 AEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNV 553 (701)
Q Consensus 474 ~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I 553 (701)
.......|..-|+.+.|+| ++.++++++.|..|++||.++........+|-..|+.++|+.|.++|++|+.|.++
T Consensus 359 ----pi~rmtgHq~lVn~V~fSP-d~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTL 433 (480)
T KOG0271|consen 359 ----PITRMTGHQALVNHVSFSP-DGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTL 433 (480)
T ss_pred ----chhhhhchhhheeeEEECC-CccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceE
Confidence 2233566778899999999 89999999999999999999887776666699999999999999999999999999
Q ss_pred EEEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCC
Q 005352 554 YMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPK 633 (701)
Q Consensus 554 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~ 633 (701)
++|++.+.+... .. ..+.+.+..+-|+|+ ++..++++.|+
T Consensus 434 Kvw~V~tkKl~~---------------------------------DL---pGh~DEVf~vDwspD----G~rV~sggkdk 473 (480)
T KOG0271|consen 434 KVWDVRTKKLKQ---------------------------------DL---PGHADEVFAVDWSPD----GQRVASGGKDK 473 (480)
T ss_pred EEEEeeeeeecc---------------------------------cC---CCCCceEEEEEecCC----CceeecCCCce
Confidence 999999887321 00 112445566667887 78889999999
Q ss_pred cccCCC
Q 005352 634 GCATWP 639 (701)
Q Consensus 634 ~~~~W~ 639 (701)
.+++|.
T Consensus 474 v~~lw~ 479 (480)
T KOG0271|consen 474 VLRLWR 479 (480)
T ss_pred EEEeec
Confidence 999995
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-40 Score=320.52 Aligned_cols=278 Identities=21% Similarity=0.349 Sum_probs=248.2
Q ss_pred ccCcceeeecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccC--CCEEEEEeCCCcEEEEEe
Q 005352 202 KQGEGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPD--GQYLASAGDDGVVRLWQV 279 (701)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd--g~~Lasgs~Dg~I~iWd~ 279 (701)
++-..+.++.++..+++|+-+|.++||.... ....+.|.+|.+.|.++.|+|. +..||||+.||++++|++
T Consensus 176 rPis~~~fS~ds~~laT~swsG~~kvW~~~~-------~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~ 248 (459)
T KOG0272|consen 176 RPISGCSFSRDSKHLATGSWSGLVKVWSVPQ-------CNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKL 248 (459)
T ss_pred CcceeeEeecCCCeEEEeecCCceeEeecCC-------cceeEEEeccccceeeEEEccCCCccceeeeccCCceeeecc
Confidence 3334567888889999999999999997543 2344679999999999999996 668999999999999998
Q ss_pred ecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEE
Q 005352 280 VEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILD 359 (701)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~ 359 (701)
.+. .++..+.+|...|..
T Consensus 249 ~~e--------------------------------------------------------------~~l~~l~gH~~RVs~ 266 (459)
T KOG0272|consen 249 SQE--------------------------------------------------------------TPLQDLEGHLARVSR 266 (459)
T ss_pred CCC--------------------------------------------------------------cchhhhhcchhhhee
Confidence 765 456778899999999
Q ss_pred EEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEE-EEecCC
Q 005352 360 LSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIR 436 (701)
Q Consensus 360 l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~-~~~~~~ 436 (701)
++|+|+| +|+|++.|.+-++||++++..+.... |...|.+++|+| +|.++++|+.|..-+|||+++++++ .+.+|.
T Consensus 267 VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~-DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~ 345 (459)
T KOG0272|consen 267 VAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQP-DGSLAATGGLDSLGRVWDLRTGRCIMFLAGHI 345 (459)
T ss_pred eeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecC-CCceeeccCccchhheeecccCcEEEEecccc
Confidence 9999999 99999999999999999987665554 999999999999 9999999999999999999999887 455789
Q ss_pred CcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeC
Q 005352 437 QIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQG 516 (701)
Q Consensus 437 ~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~ 516 (701)
.+|.+|.|+|+|..|++|+.|++++|||++...... ....|..-|+.+.|.|..+.+|++++.|++++||..
T Consensus 346 k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly--------~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~ 417 (459)
T KOG0272|consen 346 KEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELY--------TIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWST 417 (459)
T ss_pred cceeeEeECCCceEEeecCCCCcEEEeeecccccce--------ecccccchhhheEecccCCeEEEEcccCcceeeecC
Confidence 999999999999999999999999999999876532 245577889999999988999999999999999999
Q ss_pred CccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEe
Q 005352 517 PNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWN 557 (701)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd 557 (701)
.+....-...+|.+.|.++.+++|+++|+|++.|.++++|.
T Consensus 418 ~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 418 RTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred CCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 98887777778999999999999999999999999999996
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-39 Score=313.91 Aligned_cols=242 Identities=21% Similarity=0.336 Sum_probs=221.3
Q ss_pred cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeec
Q 005352 248 AHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRT 327 (701)
Q Consensus 248 ~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (701)
|-+.+|..+.|++|+..||||+.+|.++||+..+.
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~--------------------------------------------- 207 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQC--------------------------------------------- 207 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCc---------------------------------------------
Confidence 46789999999999999999999999999998765
Q ss_pred CCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecC--C-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEe
Q 005352 328 SESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN--N-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFN 403 (701)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~--~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~ 403 (701)
..+++|.||...|.++.|+|. + .++||+.||++++|++.+..++..+. |...|..++|+
T Consensus 208 -----------------~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafH 270 (459)
T KOG0272|consen 208 -----------------NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFH 270 (459)
T ss_pred -----------------ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeec
Confidence 346788999999999999997 4 99999999999999999998888886 89999999999
Q ss_pred eCCCCEEEEEEcCCcEEEEeCCCCcEE-EEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeeccc
Q 005352 404 PVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKK 482 (701)
Q Consensus 404 p~~~~~l~sgs~dg~v~iwd~~~~~~~-~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~ 482 (701)
| +|++|++++.|.+-++||++++..+ ...+|...|.+++|.|||..+++|+.|..-+|||++++..++. .
T Consensus 271 P-sG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~--------L 341 (459)
T KOG0272|consen 271 P-SGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMF--------L 341 (459)
T ss_pred C-CCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEE--------e
Confidence 9 9999999999999999999998755 6678999999999999999999999999999999999987643 2
Q ss_pred CCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEec-CCCEEEEEeCCCcEEEEeCCCC
Q 005352 483 KAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTS-DGKHIVSAGEDSNVYMWNCIGH 561 (701)
Q Consensus 483 ~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~-dg~~l~sgs~Dg~I~iWd~~~~ 561 (701)
..|...|.++.|+| ++..|++|+.|++++|||++.....+....|..-|+.++|+| .|.+|+|++.|++++||.-.+.
T Consensus 342 ~gH~k~I~~V~fsP-NGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~ 420 (459)
T KOG0272|consen 342 AGHIKEILSVAFSP-NGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTW 420 (459)
T ss_pred cccccceeeEeECC-CceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCc
Confidence 34778899999999 899999999999999999998888888888999999999998 7899999999999999985443
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=314.88 Aligned_cols=294 Identities=20% Similarity=0.329 Sum_probs=251.6
Q ss_pred EEEcCCccCeEEEEEecCCeEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCC
Q 005352 348 HEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSC 427 (701)
Q Consensus 348 ~~~~~h~~~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~ 427 (701)
..+.||...|..++++.+..++..+..+.|++|+..+.+|++++... ++.+..|.| .++++++|...|.+.+||+.+.
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~-y~l~~~Fvp-gd~~Iv~G~k~Gel~vfdlaS~ 444 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCG-YILASKFVP-GDRYIVLGTKNGELQVFDLASA 444 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEeccc-cEEEEEecC-CCceEEEeccCCceEEEEeehh
Confidence 45679999999999999996666666789999999999999999855 899999999 9999999999999999999998
Q ss_pred cEEE-EecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeee---eeeeEEeec-ccCCCCCCeeEEEEecCCCCEE
Q 005352 428 HVVD-WVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLE---LDAEICVHS-KKKAPCKRITGFQFLPQDSSKV 502 (701)
Q Consensus 428 ~~~~-~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~---~~~~~~~~~-~~~~~~~~i~~l~~~p~~~~~l 502 (701)
..+. ...|.+.|+.++.+||+..+++|+.|.+|++||+.--.-. ....+.+.. ..-.....|.++.++| ++.+|
T Consensus 445 ~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Sp-dgk~L 523 (888)
T KOG0306|consen 445 SLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSP-DGKLL 523 (888)
T ss_pred hhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcC-CCcEE
Confidence 8774 4468999999999999999999999999999997421110 000011111 1122346799999999 89999
Q ss_pred EEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCCCCccccccccccccccCCc
Q 005352 503 MVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNA 582 (701)
Q Consensus 503 ~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~ 582 (701)
+++--|++|+||-+.+........+|.-+|.++.++||+++|+|||.|.+|+||-++=|.
T Consensus 524 aVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGD-------------------- 583 (888)
T KOG0306|consen 524 AVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGD-------------------- 583 (888)
T ss_pred EEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccch--------------------
Confidence 999999999999999988888888899999999999999999999999999999876554
Q ss_pred eEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCCcccCCCCccCCCCccccccccchhhhhhh
Q 005352 583 SIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLSSASALHKSQYKF 662 (701)
Q Consensus 583 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~ 662 (701)
++++...| +++++.+.|.|. .+.|++++.|+.++.|+.++..+++.+.+|
T Consensus 584 -------------CHKS~fAH---dDSvm~V~F~P~----~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H---------- 633 (888)
T KOG0306|consen 584 -------------CHKSFFAH---DDSVMSVQFLPK----THLFFTCGKDGKVKQWDGEKFEEIQKLDGH---------- 633 (888)
T ss_pred -------------hhhhhhcc---cCceeEEEEccc----ceeEEEecCcceEEeechhhhhhheeeccc----------
Confidence 55554444 678899999996 889999999999999999999999999888
Q ss_pred hhcccccccccCCCccEEEEecCCCeEeEEeecC
Q 005352 663 LKSSCLCTTSSHAWGLVIVTAGWDGRIRSFLNYG 696 (701)
Q Consensus 663 ~~~~~~~~~~~~~~g~~ivTgg~DG~Irvw~~~g 696 (701)
..++||++.+++ |.++||++.|..||+|-...
T Consensus 634 -~~ev~cLav~~~-G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 634 -HSEVWCLAVSPN-GSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred -hheeeeeEEcCC-CCeEEeccCCceeEeeeccC
Confidence 579999999999 99999999999999997544
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=284.64 Aligned_cols=291 Identities=19% Similarity=0.309 Sum_probs=246.7
Q ss_pred ceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEE
Q 005352 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (701)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (701)
+.|+||.+.|.+|.|++|.++|++++.||.+.|||.-+..+.+.++++..-+....+.+.... .
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~----------------V 112 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNF----------------V 112 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCe----------------E
Confidence 568999999999999999999999999999999999998888877766544433344333221 1
Q ss_pred eeecCCccEEEcCCccc--cccCCCeEEEcCCccCeEEEEEecCCeEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEE
Q 005352 324 LRRTSESACVVFPPKVF--RILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCV 400 (701)
Q Consensus 324 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~h~~~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l 400 (701)
..+..+..+.+|+.+.- +..-+....+.+|++-+.|+.|-++++|+|+|.|.+..+||+++++.+..|. |.+.|.++
T Consensus 113 AcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~sl 192 (343)
T KOG0286|consen 113 ACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSL 192 (343)
T ss_pred EecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEE
Confidence 12334455555555533 2222455678999999999999998899999999999999999999999997 99999999
Q ss_pred EEeeCCCCEEEEEEcCCcEEEEeCCCCcEE-EEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEee
Q 005352 401 HFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVH 479 (701)
Q Consensus 401 ~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~-~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~ 479 (701)
.+.|.+++.|++|+-|++.++||++.+.++ .+.+|...|++++|.|+|..|++|+.|+++++||++..+......
T Consensus 193 sl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys---- 268 (343)
T KOG0286|consen 193 SLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYS---- 268 (343)
T ss_pred ecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeec----
Confidence 999989999999999999999999999888 456789999999999999999999999999999999876543322
Q ss_pred cccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEe
Q 005352 480 SKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWN 557 (701)
Q Consensus 480 ~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd 557 (701)
......+|++++|+. .+.+|++|..|..+.+||.-.....-...+|...|.++..+|||..++||+.|..++||.
T Consensus 269 --~~~~~~gitSv~FS~-SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 269 --HDSIICGITSVAFSK-SGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred --cCcccCCceeEEEcc-cccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 334457899999999 899999999999999999887777777778999999999999999999999999999994
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=313.85 Aligned_cols=410 Identities=18% Similarity=0.211 Sum_probs=308.8
Q ss_pred eeeecCccccccccccceEEEEEccCccchhhhcccCceecc-CCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeee
Q 005352 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQA-HDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERL 285 (701)
Q Consensus 207 ~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~-H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~ 285 (701)
.++.+++..+++++..+.+++|++... . ..+..++ |++||..|+|+|.|.+|++||.|+.|+|||+..+.+.
T Consensus 68 ~~l~~d~~~L~~a~rs~llrv~~L~tg--k-----~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~t 140 (775)
T KOG0319|consen 68 LALTPDEEVLVTASRSQLLRVWSLPTG--K-----LIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCT 140 (775)
T ss_pred eeecCCccEEEEeeccceEEEEEcccc--h-----HhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEE
Confidence 456677888899999999999988654 2 2234555 9999999999999999999999999999999999999
Q ss_pred eeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecC
Q 005352 286 TEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN 365 (701)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~ 365 (701)
+.+..+...+..+.|.++....+... +..+....+|+...-. ..++.+..|...|++++++++
T Consensus 141 h~fkG~gGvVssl~F~~~~~~~lL~s--------------g~~D~~v~vwnl~~~~---tcl~~~~~H~S~vtsL~~~~d 203 (775)
T KOG0319|consen 141 HSFKGHGGVVSSLLFHPHWNRWLLAS--------------GATDGTVRVWNLNDKR---TCLHTMILHKSAVTSLAFSED 203 (775)
T ss_pred EEecCCCceEEEEEeCCccchhheee--------------cCCCceEEEEEcccCc---hHHHHHHhhhhheeeeeeccC
Confidence 99998888777777766654422111 1122222222221111 135566778888888888887
Q ss_pred C-eEEEEECCCcEEEEECC-------------------------------------------------------------
Q 005352 366 N-YLLSASIDKTVRLWRVG------------------------------------------------------------- 383 (701)
Q Consensus 366 ~-~l~s~s~dg~I~iWd~~------------------------------------------------------------- 383 (701)
+ .+++++.|..+.|||+.
T Consensus 204 ~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e 283 (775)
T KOG0319|consen 204 SLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEE 283 (775)
T ss_pred CceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchh
Confidence 7 77788888888888761
Q ss_pred -----------------------------------------------------------------------CCeeeeeec
Q 005352 384 -----------------------------------------------------------------------NDHCLRVFP 392 (701)
Q Consensus 384 -----------------------------------------------------------------------~~~~~~~~~ 392 (701)
+..|.-.-.
T Consensus 284 ~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~G 363 (775)
T KOG0319|consen 284 IDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPG 363 (775)
T ss_pred hhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeC
Confidence 001110112
Q ss_pred CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEE-----EEecCCCcEEEEEEeeCC-CeEEEEecCCcEEEEECC
Q 005352 393 HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-----DWVDIRQIVTAVCYRPDG-QGGIVGSMMGDCRFYNVS 466 (701)
Q Consensus 393 h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~-----~~~~~~~~i~~i~~sp~g-~~l~~gs~dg~v~i~d~~ 466 (701)
|...|.++.... .+.+|++|+.|.++++|.++++... ...+|...|.+++++..+ .+|++++.|+++++|++.
T Consensus 364 H~e~vlSL~~~~-~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~ 442 (775)
T KOG0319|consen 364 HTEAVLSLDVWS-SGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLP 442 (775)
T ss_pred chhheeeeeecc-cCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCC
Confidence 556666666333 5679999999999999988544322 456789999999997754 588999999999999998
Q ss_pred CCeeeee-eeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEE
Q 005352 467 DNHLELD-AEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIV 545 (701)
Q Consensus 467 ~~~~~~~-~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~ 545 (701)
..+.... ..+........|...|++++++| +..++++||.|.+.+||++.+....-...+|...|.++.|+|..+.++
T Consensus 443 ~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~-ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~la 521 (775)
T KOG0319|consen 443 KSKETAFPIVLTCRYTERAHDKDINCVAIAP-NDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLA 521 (775)
T ss_pred CcccccccceehhhHHHHhhcccccceEecC-CCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeE
Confidence 7332211 11222334567889999999999 789999999999999999997776666677999999999999999999
Q ss_pred EEeCCCcEEEEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCcc
Q 005352 546 SAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQE 625 (701)
Q Consensus 546 sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~ 625 (701)
|+|.|++|+||.+.+.. .++.++.+.+ .+....|-. .+..
T Consensus 522 T~SgD~TvKIW~is~fS--------ClkT~eGH~~----------------------------aVlra~F~~----~~~q 561 (775)
T KOG0319|consen 522 TCSGDKTVKIWSISTFS--------CLKTFEGHTS----------------------------AVLRASFIR----NGKQ 561 (775)
T ss_pred eccCCceEEEEEeccce--------eeeeecCccc----------------------------eeEeeeeee----CCcE
Confidence 99999999999999886 2222222211 122223333 3678
Q ss_pred ccccCCCCcccCCCCccCCCCccccccccchhhhhhhhhcccccccccCCCccEEEEecCCCeEeEEee
Q 005352 626 YVFESFPKGCATWPEEKLPALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFLN 694 (701)
Q Consensus 626 ~~~~s~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivTgg~DG~Irvw~~ 694 (701)
+++++.||.+++|+..+.+++.++.+| .+.+|+++.++. +.+++|||.||.|-+|.-
T Consensus 562 liS~~adGliKlWnikt~eC~~tlD~H-----------~DrvWaL~~~~~-~~~~~tgg~Dg~i~~wkD 618 (775)
T KOG0319|consen 562 LISAGADGLIKLWNIKTNECEMTLDAH-----------NDRVWALSVSPL-LDMFVTGGGDGRIIFWKD 618 (775)
T ss_pred EEeccCCCcEEEEeccchhhhhhhhhc-----------cceeEEEeecCc-cceeEecCCCeEEEEeec
Confidence 899999999999999999999999888 689999999999 889999999999999963
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=271.42 Aligned_cols=278 Identities=20% Similarity=0.358 Sum_probs=240.8
Q ss_pred ccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCC
Q 005352 215 DAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEID 294 (701)
Q Consensus 215 ~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~ 294 (701)
.|++++.|.+||+|+.. .-.+..+++...+.|+.+...|++++||+|+. ..||+||+.++..
T Consensus 12 iLvsA~YDhTIRfWqa~-------tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np---------- 73 (311)
T KOG0315|consen 12 ILVSAGYDHTIRFWQAL-------TGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNP---------- 73 (311)
T ss_pred EEEeccCcceeeeeehh-------cCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCC----------
Confidence 56779999999999643 33445678878899999999999999999997 5799999988741
Q ss_pred CceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEEC
Q 005352 295 PSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASI 373 (701)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~ 373 (701)
.|+.+|.+|+..|+.+.|..+| .++||+.
T Consensus 74 --------------------------------------------------~Pv~t~e~h~kNVtaVgF~~dgrWMyTgse 103 (311)
T KOG0315|consen 74 --------------------------------------------------NPVATFEGHTKNVTAVGFQCDGRWMYTGSE 103 (311)
T ss_pred --------------------------------------------------CceeEEeccCCceEEEEEeecCeEEEecCC
Confidence 5788999999999999999999 9999999
Q ss_pred CCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEE--ecCCCcEEEEEEeeCCCeE
Q 005352 374 DKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDW--VDIRQIVTAVCYRPDGQGG 451 (701)
Q Consensus 374 dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~--~~~~~~i~~i~~sp~g~~l 451 (701)
||+++|||++...+.+.|.|..+|+++..+| +...|++|..+|.|++||+....+... ......|.++...|+|.++
T Consensus 104 Dgt~kIWdlR~~~~qR~~~~~spVn~vvlhp-nQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml 182 (311)
T KOG0315|consen 104 DGTVKIWDLRSLSCQRNYQHNSPVNTVVLHP-NQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSML 182 (311)
T ss_pred CceEEEEeccCcccchhccCCCCcceEEecC-CcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEE
Confidence 9999999999999999999999999999999 888999999999999999988755532 2345689999999999999
Q ss_pred EEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCcc-ceeeecccCCC
Q 005352 452 IVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV-IGKYKGLRRSG 530 (701)
Q Consensus 452 ~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~-~~~~~~~~~~~ 530 (701)
+.+...|++++|++-.... ..++....+...|...|..+.++| +.++|++++.|.+++||+..+. ........|..
T Consensus 183 ~a~nnkG~cyvW~l~~~~~--~s~l~P~~k~~ah~~~il~C~lSP-d~k~lat~ssdktv~iwn~~~~~kle~~l~gh~r 259 (311)
T KOG0315|consen 183 AAANNKGNCYVWRLLNHQT--ASELEPVHKFQAHNGHILRCLLSP-DVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQR 259 (311)
T ss_pred EEecCCccEEEEEccCCCc--cccceEhhheecccceEEEEEECC-CCcEEEeecCCceEEEEecCCceeeEEEeecCCc
Confidence 9999999999999987432 223344455677888999999999 8999999999999999999877 33344455889
Q ss_pred CeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCCC
Q 005352 531 NQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEP 564 (701)
Q Consensus 531 ~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~ 564 (701)
.+..++||.||.||+||+.|+.+++|++..+++.
T Consensus 260 WvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v 293 (311)
T KOG0315|consen 260 WVWDCAFSADGEYLVTASSDHTARLWDLSAGKEV 293 (311)
T ss_pred eEEeeeeccCccEEEecCCCCceeecccccCcee
Confidence 9999999999999999999999999999998853
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-34 Score=265.72 Aligned_cols=250 Identities=21% Similarity=0.343 Sum_probs=217.0
Q ss_pred ceeccCCCcEEEEEEccC-CCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeE
Q 005352 244 QEIQAHDGSILTMKFSPD-GQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (701)
Q Consensus 244 ~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (701)
..+.+|++.|+.++..+. ...|++++.|.++.+|++.....
T Consensus 9 ~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~-------------------------------------- 50 (315)
T KOG0279|consen 9 GTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDI-------------------------------------- 50 (315)
T ss_pred eeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCcc--------------------------------------
Confidence 468899999999999886 56899999999999999876420
Q ss_pred EeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEE
Q 005352 323 SLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCV 400 (701)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l 400 (701)
..+.+++.|.||...|..+..++++ +.++++.|+++++||+.+++..+.|. |...|.++
T Consensus 51 -------------------~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsv 111 (315)
T KOG0279|consen 51 -------------------KYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSV 111 (315)
T ss_pred -------------------ccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEE
Confidence 1126788899999999999999999 99999999999999999998888876 99999999
Q ss_pred EEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecC--CCcEEEEEEeeC--CCeEEEEecCCcEEEEECCCCeeeeeeeE
Q 005352 401 HFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDI--RQIVTAVCYRPD--GQGGIVGSMMGDCRFYNVSDNHLELDAEI 476 (701)
Q Consensus 401 ~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~--~~~i~~i~~sp~--g~~l~~gs~dg~v~i~d~~~~~~~~~~~~ 476 (701)
+|+| ++..+++|+.|.+|++|++........... ++.|++++|+|+ ..+|+.++.|++|++||+++.++..
T Consensus 112 a~s~-dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~---- 186 (315)
T KOG0279|consen 112 AFST-DNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRT---- 186 (315)
T ss_pred EecC-CCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhh----
Confidence 9999 999999999999999999988776665554 789999999998 6799999999999999999866432
Q ss_pred EeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 005352 477 CVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMW 556 (701)
Q Consensus 477 ~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iW 556 (701)
....|...++.++++| |+.+.++|+.||.+.+||++.....+.. .+...|.+++|+|+.-.|+.+. +..|+||
T Consensus 187 ----~~~gh~~~v~t~~vSp-DGslcasGgkdg~~~LwdL~~~k~lysl-~a~~~v~sl~fspnrywL~~at-~~sIkIw 259 (315)
T KOG0279|consen 187 ----TFIGHSGYVNTVTVSP-DGSLCASGGKDGEAMLWDLNEGKNLYSL-EAFDIVNSLCFSPNRYWLCAAT-ATSIKIW 259 (315)
T ss_pred ----ccccccccEEEEEECC-CCCEEecCCCCceEEEEEccCCceeEec-cCCCeEeeEEecCCceeEeecc-CCceEEE
Confidence 3456778899999999 8999999999999999999988775554 4889999999999976666554 5569999
Q ss_pred eCCCCC
Q 005352 557 NCIGHE 562 (701)
Q Consensus 557 d~~~~~ 562 (701)
|+.++.
T Consensus 260 dl~~~~ 265 (315)
T KOG0279|consen 260 DLESKA 265 (315)
T ss_pred eccchh
Confidence 998876
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=266.99 Aligned_cols=284 Identities=20% Similarity=0.391 Sum_probs=230.8
Q ss_pred cccCcceeeec---CccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEE
Q 005352 201 DKQGEGERVRL---NEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLW 277 (701)
Q Consensus 201 ~~~~~~~~~~~---~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iW 277 (701)
.|.+++..++. +.+.++.+++|..+.+|++......+- ...+.+.||.-.|..+..++||++.++++.|+++++|
T Consensus 13 gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G--~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlW 90 (315)
T KOG0279|consen 13 GHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYG--VPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLW 90 (315)
T ss_pred CCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccC--ceeeeeeccceEecceEEccCCceEEeccccceEEEE
Confidence 45666655433 345667799999999999977644332 3335688999999999999999999999999999999
Q ss_pred EeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCe
Q 005352 278 QVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEI 357 (701)
Q Consensus 278 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I 357 (701)
|+.+++ +.+.|.||...|
T Consensus 91 Dl~~g~--------------------------------------------------------------~t~~f~GH~~dV 108 (315)
T KOG0279|consen 91 DLATGE--------------------------------------------------------------STRRFVGHTKDV 108 (315)
T ss_pred EecCCc--------------------------------------------------------------EEEEEEecCCce
Confidence 999874 456778999999
Q ss_pred EEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec--CCCCeEEEEEeeCC-CCEEEEEEcCCcEEEEeCCCCcEE-EE
Q 005352 358 LDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVD-DNYFISGSIDGKVRIWAVLSCHVV-DW 432 (701)
Q Consensus 358 ~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~~-~~~l~sgs~dg~v~iwd~~~~~~~-~~ 432 (701)
++++|++++ ++++|+.|++|++||+.......... +.+.|+|+.|+|.. +.+|++++.|++|++||+++.+.. ..
T Consensus 109 lsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~ 188 (315)
T KOG0279|consen 109 LSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTF 188 (315)
T ss_pred EEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhcc
Confidence 999999999 99999999999999987665544444 37899999999932 789999999999999999999877 56
Q ss_pred ecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEE
Q 005352 433 VDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVR 512 (701)
Q Consensus 433 ~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~ 512 (701)
.+|.+.++.++++|||...++|+.||.+.+||++.++..+ ...+...|.+++|+| + .+.++...+..|+
T Consensus 189 ~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~ly---------sl~a~~~v~sl~fsp-n-rywL~~at~~sIk 257 (315)
T KOG0279|consen 189 IGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLY---------SLEAFDIVNSLCFSP-N-RYWLCAATATSIK 257 (315)
T ss_pred ccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeE---------eccCCCeEeeEEecC-C-ceeEeeccCCceE
Confidence 7899999999999999999999999999999999887643 234557899999999 3 5555556666799
Q ss_pred EEeCCccceee------ecc---cCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 005352 513 ILQGPNVIGKY------KGL---RRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCI 559 (701)
Q Consensus 513 iwd~~~~~~~~------~~~---~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~ 559 (701)
|||+....... .+. .......+++|++||..|++|-.|+.|++|.+.
T Consensus 258 Iwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 258 IWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred EEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 99987433222 111 123345788999999999999999999999874
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=282.58 Aligned_cols=412 Identities=16% Similarity=0.216 Sum_probs=294.2
Q ss_pred cCcceeeecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeC--C--CcEEEEE
Q 005352 203 QGEGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGD--D--GVVRLWQ 278 (701)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~--D--g~I~iWd 278 (701)
+..+.++++++.+++.|...|.||||+....... ...+++.-.++|..|+|++++++|+..|+ + |.+.+||
T Consensus 61 ~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hi-----LKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~D 135 (603)
T KOG0318|consen 61 QVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHI-----LKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWD 135 (603)
T ss_pred eeEEEEeCCCceEEeecCCcCcEEEEeccCccee-----eeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEec
Confidence 3345678889899999999999999997543322 23567778999999999999999988876 3 3455555
Q ss_pred eecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeE
Q 005352 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEIL 358 (701)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~ 358 (701)
++..+-++..+... +....+.+.....+ ...+.+..+..|...-| +...++..|...|.
T Consensus 136 --SG~SvGei~GhSr~-------------ins~~~KpsRPfRi--~T~sdDn~v~ffeGPPF----KFk~s~r~HskFV~ 194 (603)
T KOG0318|consen 136 --SGNSVGEITGHSRR-------------INSVDFKPSRPFRI--ATGSDDNTVAFFEGPPF----KFKSSFREHSKFVN 194 (603)
T ss_pred --CCCccceeecccee-------------EeeeeccCCCceEE--EeccCCCeEEEeeCCCe----eeeeccccccccee
Confidence 45444444433322 12222222222211 12222333333333222 33456678999999
Q ss_pred EEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec----CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEE---
Q 005352 359 DLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP----HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV--- 430 (701)
Q Consensus 359 ~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~----h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~--- 430 (701)
|+.|+|+| ++++++.||+|.+||-.+++.+..+. |.+.|.+++|+| |...|++++.|.+++|||+.+.+++
T Consensus 195 ~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsP-Ds~~~~T~SaDkt~KIWdVs~~slv~t~ 273 (603)
T KOG0318|consen 195 CVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSP-DSTQFLTVSADKTIKIWDVSTNSLVSTW 273 (603)
T ss_pred eEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECC-CCceEEEecCCceEEEEEeeccceEEEe
Confidence 99999999 99999999999999999999999986 999999999999 9999999999999999998664322
Q ss_pred -----------------------------------------EEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCe
Q 005352 431 -----------------------------------------DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNH 469 (701)
Q Consensus 431 -----------------------------------------~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~ 469 (701)
...+|...|++++.+|++++|++|+.||.|.-|+...+.
T Consensus 274 ~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~ 353 (603)
T KOG0318|consen 274 PMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGT 353 (603)
T ss_pred ecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCcc
Confidence 123467789999999999999999999999999986543
Q ss_pred eeee------e--------------------eEEe-------------------------------------------ec
Q 005352 470 LELD------A--------------------EICV-------------------------------------------HS 480 (701)
Q Consensus 470 ~~~~------~--------------------~~~~-------------------------------------------~~ 480 (701)
.-.. . .+.. +.
T Consensus 354 ~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~ 433 (603)
T KOG0318|consen 354 SDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQD 433 (603)
T ss_pred ccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEec
Confidence 2100 0 0000 00
Q ss_pred c----cCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCc--cceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEE
Q 005352 481 K----KKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN--VIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVY 554 (701)
Q Consensus 481 ~----~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~--~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~ 554 (701)
. .........+++++| ++..+++|+.|+.|+||.+.. .........|.+.|+++++|||+.|||++...+.|.
T Consensus 434 ~~~~~~~~~~y~~s~vAv~~-~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv 512 (603)
T KOG0318|consen 434 QTKVSSIPIGYESSAVAVSP-DGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVV 512 (603)
T ss_pred CCcceeeccccccceEEEcC-CCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEE
Confidence 0 001112446778888 789999999999999999874 334445566999999999999999999999999999
Q ss_pred EEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCCc
Q 005352 555 MWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKG 634 (701)
Q Consensus 555 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~ 634 (701)
+|++.+.+.. ...-.| +...+..++|+|+ ...++++|.|..
T Consensus 513 ~yd~~s~~~~--------~~~w~F---------------------------HtakI~~~aWsP~----n~~vATGSlDt~ 553 (603)
T KOG0318|consen 513 LYDVASREVK--------TNRWAF---------------------------HTAKINCVAWSPN----NKLVATGSLDTN 553 (603)
T ss_pred EEEcccCcee--------cceeee---------------------------eeeeEEEEEeCCC----ceEEEeccccce
Confidence 9999988731 111122 2334555666776 678899999999
Q ss_pred ccCCCCccCCCCcc-ccccccchhhhhhhhhcccccccccCCCccEEEEecCCCeEeEEee
Q 005352 635 CATWPEEKLPALSQ-LSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFLN 694 (701)
Q Consensus 635 ~~~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivTgg~DG~Irvw~~ 694 (701)
+-+|+.+++...-. ..+| ...++.+.+- + ...||++|.|..||+|+.
T Consensus 554 Viiysv~kP~~~i~iknAH-----------~~gVn~v~wl-d-e~tvvSsG~Da~iK~W~v 601 (603)
T KOG0318|consen 554 VIIYSVKKPAKHIIIKNAH-----------LGGVNSVAWL-D-ESTVVSSGQDANIKVWNV 601 (603)
T ss_pred EEEEEccChhhheEecccc-----------ccCceeEEEe-c-CceEEeccCcceeEEecc
Confidence 99999887765321 1223 2336655433 3 578999999999999974
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-34 Score=266.80 Aligned_cols=289 Identities=17% Similarity=0.296 Sum_probs=252.1
Q ss_pred CCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEE
Q 005352 345 KPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIW 422 (701)
Q Consensus 345 ~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iw 422 (701)
+...+++||.+.|.++.|+++. +++++|.||.+.|||.-+...+..++ ....|..++|+| .++++++|+.|+...||
T Consensus 46 ~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sP-Sg~~VAcGGLdN~Csiy 124 (343)
T KOG0286|consen 46 RTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSP-SGNFVACGGLDNKCSIY 124 (343)
T ss_pred eeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECC-CCCeEEecCcCceeEEE
Confidence 4557899999999999999999 99999999999999999988888887 567899999999 99999999999999999
Q ss_pred eCCCC--c----EE-EEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEe
Q 005352 423 AVLSC--H----VV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFL 495 (701)
Q Consensus 423 d~~~~--~----~~-~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~ 495 (701)
++.+. + +. .+.+|.+-+.++.|.+| ..|++++.|.++.+||+++++.... ...|...|.++.+.
T Consensus 125 ~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~~~~--------f~GH~gDV~slsl~ 195 (343)
T KOG0286|consen 125 PLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQTQV--------FHGHTGDVMSLSLS 195 (343)
T ss_pred ecccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceEEEE--------ecCCcccEEEEecC
Confidence 99865 2 22 46678999999999885 5789999999999999999876543 34688999999999
Q ss_pred cCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCCCCcccccccccc
Q 005352 496 PQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSL 575 (701)
Q Consensus 496 p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~ 575 (701)
|.+++.+++|+.|+..++||++.........+|...|++++|.|+|.-++||++|++.++||++...+... +
T Consensus 196 p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~--------y 267 (343)
T KOG0286|consen 196 PSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAV--------Y 267 (343)
T ss_pred CCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEee--------e
Confidence 98899999999999999999998877777777999999999999999999999999999999998764211 0
Q ss_pred ccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCCcccCCCCccCCCCccccccccc
Q 005352 576 ERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLSSASAL 655 (701)
Q Consensus 576 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~~~~~ 655 (701)
.+.....+++.+.||-. ++.++++..|.++.+|+.-+.+.+..+.+|
T Consensus 268 --------------------------s~~~~~~gitSv~FS~S----GRlLfagy~d~~c~vWDtlk~e~vg~L~GH--- 314 (343)
T KOG0286|consen 268 --------------------------SHDSIICGITSVAFSKS----GRLLFAGYDDFTCNVWDTLKGERVGVLAGH--- 314 (343)
T ss_pred --------------------------ccCcccCCceeEEEccc----ccEEEeeecCCceeEeeccccceEEEeecc---
Confidence 12223445777788775 788899999999999999999988888888
Q ss_pred hhhhhhhhhcccccccccCCCccEEEEecCCCeEeEEe
Q 005352 656 HKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFL 693 (701)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~g~~ivTgg~DG~Irvw~ 693 (701)
.+.|.++..+++ |..++||+||-++|||.
T Consensus 315 --------eNRvScl~~s~D-G~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 315 --------ENRVSCLGVSPD-GMAVATGSWDSTLRIWA 343 (343)
T ss_pred --------CCeeEEEEECCC-CcEEEecchhHheeecC
Confidence 578999999999 99999999999999994
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-32 Score=281.52 Aligned_cols=406 Identities=16% Similarity=0.239 Sum_probs=313.9
Q ss_pred cccCcceeeecCcc-ccccccccceEEEEEccCccc-hhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEE
Q 005352 201 DKQGEGERVRLNEE-DAMFCSKVQRVKVYHCKKRSK-ELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQ 278 (701)
Q Consensus 201 ~~~~~~~~~~~~~~-~~~~~~~d~~v~vw~~~~~~~-~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd 278 (701)
.-+..+.++.++++ .+++.+..+.+.||...+..+ ++......+++.+|-..|.++.|+.|.++|++|+.|.+++||.
T Consensus 94 ~fk~~v~~i~fSPng~~fav~~gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~ 173 (893)
T KOG0291|consen 94 NFKRGVGAIKFSPNGKFFAVGCGNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFG 173 (893)
T ss_pred eecCccceEEECCCCcEEEEEecceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEE
Confidence 33444555555554 334456678999999876655 5666677788999999999999999999999999999999999
Q ss_pred eecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeE
Q 005352 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEIL 358 (701)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~ 358 (701)
+...+.+ ..+.+.+|++.|.
T Consensus 174 v~~~k~~------------------------------------------------------------~~~~l~gHkd~Vv 193 (893)
T KOG0291|consen 174 VDGNKNL------------------------------------------------------------FTYALNGHKDYVV 193 (893)
T ss_pred ecccccc------------------------------------------------------------ceEeccCCCcceE
Confidence 9765421 2345689999999
Q ss_pred EEEEecCC-eEEEEECCCcEEEEECC------------------------CCeee------e--e--ec-CCCCeEEEEE
Q 005352 359 DLSWSKNN-YLLSASIDKTVRLWRVG------------------------NDHCL------R--V--FP-HSNYVTCVHF 402 (701)
Q Consensus 359 ~l~~s~~~-~l~s~s~dg~I~iWd~~------------------------~~~~~------~--~--~~-h~~~V~~l~f 402 (701)
.+-|..+. .+++.+.||.+.+|... ..+.. . . +. ....|++.+|
T Consensus 194 acfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~f 273 (893)
T KOG0291|consen 194 ACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAF 273 (893)
T ss_pred EEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeec
Confidence 99999988 99999999999999775 11100 0 0 11 3378999999
Q ss_pred eeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCC-CcEEEEEEeeCCCeEEEEecC-CcEEEEECCCCeeeeeeeEEeec
Q 005352 403 NPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIR-QIVTAVCYRPDGQGGIVGSMM-GDCRFYNVSDNHLELDAEICVHS 480 (701)
Q Consensus 403 ~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~-~~i~~i~~sp~g~~l~~gs~d-g~v~i~d~~~~~~~~~~~~~~~~ 480 (701)
++ ..+.|++|-..|...+|.+....++...... .+|..++|+..|.+|+.|+.. |.+-+|+.......+.
T Consensus 274 H~-~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlK------- 345 (893)
T KOG0291|consen 274 HK-GTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLK------- 345 (893)
T ss_pred cC-CceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeee-------
Confidence 99 8899999999999999999999988766654 789999999999999998774 8999999987765432
Q ss_pred ccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 005352 481 KKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIG 560 (701)
Q Consensus 481 ~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~ 560 (701)
...|...+++++++| |++++++|+.||+|+|||.....+......|...|+.+.|+..|+.|++++.||+|+.||+..
T Consensus 346 -QQgH~~~i~~l~YSp-Dgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkR 423 (893)
T KOG0291|consen 346 -QQGHSDRITSLAYSP-DGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKR 423 (893)
T ss_pred -ccccccceeeEEECC-CCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecc
Confidence 455778899999999 899999999999999999999888777777999999999999999999999999999999987
Q ss_pred CCCCCccccc---cccccccccC-CceEEecCCC--CCCCCCCCCCccccCCC--CCCCccccCCCccccCccccccCCC
Q 005352 561 HEEPAHDQAK---TIRSLERFTT-NASIAIPWCG--LKCGNAEKEPQLHVSDD--DSPENLAFAPARFSLGQEYVFESFP 632 (701)
Q Consensus 561 ~~~~~~~~~~---~~~~~~~~~~-~~~~a~~~~~--~~~~~~~~~~~~~~~~~--~~~~~l~~sp~~~~~~~~~~~~s~d 632 (701)
...-...... ....+..-++ ..+.|-+.+. +..|..+.+..+..+.+ .++..++|+|+ +..++++|+|
T Consensus 424 YrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~----~~~LaS~SWD 499 (893)
T KOG0291|consen 424 YRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPD----GSLLASGSWD 499 (893)
T ss_pred cceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccc----cCeEEecccc
Confidence 6643322211 1222233333 2223333322 24566666655555544 45666789997 7788999999
Q ss_pred CcccCCCCccCC-CCccccccccchhhhhhhhhcccccccccCCCccEEEEecCCCeEeEEe
Q 005352 633 KGCATWPEEKLP-ALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFL 693 (701)
Q Consensus 633 ~~~~~W~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivTgg~DG~Irvw~ 693 (701)
++|++|+.-... .+-+++. ...+..++++++ |.-|+.+..||.|.+|+
T Consensus 500 kTVRiW~if~s~~~vEtl~i------------~sdvl~vsfrPd-G~elaVaTldgqItf~d 548 (893)
T KOG0291|consen 500 KTVRIWDIFSSSGTVETLEI------------RSDVLAVSFRPD-GKELAVATLDGQITFFD 548 (893)
T ss_pred ceEEEEEeeccCceeeeEee------------ccceeEEEEcCC-CCeEEEEEecceEEEEE
Confidence 999999965442 1222221 246778899999 99999999999999997
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=285.75 Aligned_cols=289 Identities=22% Similarity=0.403 Sum_probs=242.3
Q ss_pred CceeccCCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceee
Q 005352 243 GQEIQAHDGSILTMKFSP-DGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISIL 321 (701)
Q Consensus 243 ~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (701)
...+.+|+..|.++.|.| .+.+|++||.|+.|+||++....
T Consensus 207 ~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~-------------------------------------- 248 (503)
T KOG0282|consen 207 SHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR-------------------------------------- 248 (503)
T ss_pred eeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCc--------------------------------------
Confidence 346889999999999999 89999999999999999997643
Q ss_pred EEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEE
Q 005352 322 KSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCV 400 (701)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l 400 (701)
+.+++|.||..+|.+++|+++| .|++++.|++|++||+++|+++..|.....++|+
T Consensus 249 -----------------------~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cv 305 (503)
T KOG0282|consen 249 -----------------------RCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCV 305 (503)
T ss_pred -----------------------ceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCceee
Confidence 5677889999999999999999 9999999999999999999999999999999999
Q ss_pred EEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEe-cCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEee
Q 005352 401 HFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV-DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVH 479 (701)
Q Consensus 401 ~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~-~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~ 479 (701)
.|+|.+.+.|++|+.|+.|+.||++++++++.+ .|-+.|..+.|-++|+.+++.+.|+.++||+.+..-...
T Consensus 306 kf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik------- 378 (503)
T KOG0282|consen 306 KFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIK------- 378 (503)
T ss_pred ecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccch-------
Confidence 999955599999999999999999999988555 466899999999999999999999999999998754321
Q ss_pred cccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCC-----ccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEE
Q 005352 480 SKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP-----NVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVY 554 (701)
Q Consensus 480 ~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~-----~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~ 554 (701)
...........++..+| ++.++++-+.|+.|.++.+. +....|.++.-.+.-..+.|||||.+|++|+.||.++
T Consensus 379 ~i~~~~~hsmP~~~~~P-~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~ 457 (503)
T KOG0282|consen 379 NIADPEMHTMPCLTLHP-NGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVN 457 (503)
T ss_pred hhcchhhccCcceecCC-CCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEE
Confidence 11222334577889999 78999999999999999865 4556677777778889999999999999999999999
Q ss_pred EEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCCc
Q 005352 555 MWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKG 634 (701)
Q Consensus 555 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~ 634 (701)
+||.++-+.... + ..+....+.+ .|.|. ....+++++++|.
T Consensus 458 ~wdwkt~kl~~~--------l-kah~~~ci~v---------------------------~wHP~---e~Skvat~~w~G~ 498 (503)
T KOG0282|consen 458 FWDWKTTKLVSK--------L-KAHDQPCIGV---------------------------DWHPV---EPSKVATCGWDGL 498 (503)
T ss_pred Eeechhhhhhhc--------c-ccCCcceEEE---------------------------EecCC---CcceeEecccCce
Confidence 999988763211 1 0112333334 44554 3567889999999
Q ss_pred ccCCC
Q 005352 635 CATWP 639 (701)
Q Consensus 635 ~~~W~ 639 (701)
|++|+
T Consensus 499 Ikiwd 503 (503)
T KOG0282|consen 499 IKIWD 503 (503)
T ss_pred eEecC
Confidence 99996
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-31 Score=266.42 Aligned_cols=423 Identities=17% Similarity=0.251 Sum_probs=299.8
Q ss_pred cceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeee--eeecCCCCCCceeE
Q 005352 222 VQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERL--TEVDIPEIDPSCIY 299 (701)
Q Consensus 222 d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~--~~~~~~~~~~~~~~ 299 (701)
.+.|.+.+++... ....+..|..+++-.+|+|.|-|+|+|...|+|||||....+.+ .+++....+
T Consensus 38 Gksv~ir~i~~~~-------~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~----- 105 (603)
T KOG0318|consen 38 GKSVIIRNIDNPA-------SVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGP----- 105 (603)
T ss_pred CCEEEEEECCCcc-------ceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccc-----
Confidence 4556677655432 23456679999999999999999999999999999998764432 233333322
Q ss_pred EeeccCCCcceeeeccccceeeEEeeecC-CccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC--eEEEEECCCc
Q 005352 300 FTVNHLSELKPLFMDKEKISILKSLRRTS-ESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLSASIDKT 376 (701)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~--~l~s~s~dg~ 376 (701)
+..+.|+.+...+.....+.. -+....++. +..+-++.||...|.++.|-|.. +++||+.|++
T Consensus 106 --------I~Di~Wd~ds~RI~avGEGrerfg~~F~~DS------G~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~ 171 (603)
T KOG0318|consen 106 --------IKDISWDFDSKRIAAVGEGRERFGHVFLWDS------GNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNT 171 (603)
T ss_pred --------cccceeCCCCcEEEEEecCccceeEEEEecC------CCccceeeccceeEeeeeccCCCceEEEeccCCCe
Confidence 333444444444333322211 112222222 25577889999999999999988 9999999999
Q ss_pred EEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEe----cCCCcEEEEEEeeCCCeE
Q 005352 377 VRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV----DIRQIVTAVCYRPDGQGG 451 (701)
Q Consensus 377 I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~----~~~~~i~~i~~sp~g~~l 451 (701)
|.+|+-.-.+....+. |...|+|+.|+| |+.+|++++.||++.+||=.+++.+..+ .|.+.|.+++|+||++.+
T Consensus 172 v~ffeGPPFKFk~s~r~HskFV~~VRysP-DG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~ 250 (603)
T KOG0318|consen 172 VAFFEGPPFKFKSSFREHSKFVNCVRYSP-DGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQF 250 (603)
T ss_pred EEEeeCCCeeeeecccccccceeeEEECC-CCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceE
Confidence 9999876666666665 899999999999 9999999999999999999999888544 588999999999999999
Q ss_pred EEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCC
Q 005352 452 IVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGN 531 (701)
Q Consensus 452 ~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~ 531 (701)
++++.|.+++|||+.+.++..+..+... -...-.++.|- ...|++.+.+|.|.+++...........+|...
T Consensus 251 ~T~SaDkt~KIWdVs~~slv~t~~~~~~-----v~dqqvG~lWq---kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ 322 (603)
T KOG0318|consen 251 LTVSADKTIKIWDVSTNSLVSTWPMGST-----VEDQQVGCLWQ---KDHLITVSLSGTINYLNPSDPSVLKVISGHNKS 322 (603)
T ss_pred EEecCCceEEEEEeeccceEEEeecCCc-----hhceEEEEEEe---CCeEEEEEcCcEEEEecccCCChhheecccccc
Confidence 9999999999999999876554332111 12233445553 578999999999999998877655566669999
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEeCCCCCCCCcc---ccccccccccccCCceEEecCCCCC----------------
Q 005352 532 QLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHD---QAKTIRSLERFTTNASIAIPWCGLK---------------- 592 (701)
Q Consensus 532 v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~~~~---~~~~~~~~~~~~~~~~~a~~~~~~~---------------- 592 (701)
|+++..+|++++|++|+.||.|.-|+..++...... +...+..+........+.+.|..+-
T Consensus 323 ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~ 402 (603)
T KOG0318|consen 323 ITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVV 402 (603)
T ss_pred eeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCccccccee
Confidence 999999999999999999999999999877643211 1111222111111122222221110
Q ss_pred -CCC--------------------------------------------------------CCCCCccc------------
Q 005352 593 -CGN--------------------------------------------------------AEKEPQLH------------ 603 (701)
Q Consensus 593 -~~~--------------------------------------------------------~~~~~~~~------------ 603 (701)
... ......+.
T Consensus 403 ~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~ 482 (603)
T KOG0318|consen 403 KLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAK 482 (603)
T ss_pred ecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceee
Confidence 000 00000000
Q ss_pred -cCCCCCCCccccCCCccccCccccccCCCCcccCCCCccCCCCccccccccchhhhhhhhhcccccccccCCCccEEEE
Q 005352 604 -VSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVT 682 (701)
Q Consensus 604 -~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivT 682 (701)
......++.+++||+ +.+|+++-..|.+.+|+.+...... ..+.||.+.+.+++++++ +.+++|
T Consensus 483 ~~~h~a~iT~vaySpd----~~yla~~Da~rkvv~yd~~s~~~~~----------~~w~FHtakI~~~aWsP~-n~~vAT 547 (603)
T KOG0318|consen 483 LLEHRAAITDVAYSPD----GAYLAAGDASRKVVLYDVASREVKT----------NRWAFHTAKINCVAWSPN-NKLVAT 547 (603)
T ss_pred eecccCCceEEEECCC----CcEEEEeccCCcEEEEEcccCceec----------ceeeeeeeeEEEEEeCCC-ceEEEe
Confidence 011223567778897 7788888888999999987766411 124455788999999999 999999
Q ss_pred ecCCCeEeEEee
Q 005352 683 AGWDGRIRSFLN 694 (701)
Q Consensus 683 gg~DG~Irvw~~ 694 (701)
|+-|-.|.||..
T Consensus 548 GSlDt~Viiysv 559 (603)
T KOG0318|consen 548 GSLDTNVIIYSV 559 (603)
T ss_pred ccccceEEEEEc
Confidence 999999999963
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=259.51 Aligned_cols=283 Identities=24% Similarity=0.416 Sum_probs=237.6
Q ss_pred ceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEE
Q 005352 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (701)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (701)
..+.+|++.|+.++|+|+|.+|||||.|..|.+|++....
T Consensus 41 m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc---------------------------------------- 80 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC---------------------------------------- 80 (338)
T ss_pred hhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc----------------------------------------
Confidence 3478999999999999999999999999999999976543
Q ss_pred eeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEE
Q 005352 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVH 401 (701)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~ 401 (701)
+...++++|++.|..+.|.+++ .+++++.|++|+.||++++++++.++ |...|+.+.
T Consensus 81 ---------------------eN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~ 139 (338)
T KOG0265|consen 81 ---------------------ENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLD 139 (338)
T ss_pred ---------------------cceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecC
Confidence 2344567999999999999999 99999999999999999999999988 999999998
Q ss_pred EeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecc
Q 005352 402 FNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSK 481 (701)
Q Consensus 402 f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~ 481 (701)
-+.....++.+++.|+++++||+++...++.+..+..+++++|...+..+++|+-|+.|++||++.+.....
T Consensus 140 p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~-------- 211 (338)
T KOG0265|consen 140 PSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYT-------- 211 (338)
T ss_pred ccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCceeeeccccCcceEE--------
Confidence 665556678889999999999999999999998899999999999999999999999999999988775432
Q ss_pred cCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCcc------ceeeecccCC--CCeEEEEEecCCCEEEEEeCCCcE
Q 005352 482 KKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV------IGKYKGLRRS--GNQLSACFTSDGKHIVSAGEDSNV 553 (701)
Q Consensus 482 ~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~------~~~~~~~~~~--~~v~~l~~s~dg~~l~sgs~Dg~I 553 (701)
...|...|+++..+| ++.++++-+.|.++++||++.. ...+.++.|. .....++|+|++.++..|+.|..+
T Consensus 212 lsGh~DtIt~lsls~-~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~v 290 (338)
T KOG0265|consen 212 LSGHADTITGLSLSR-YGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFV 290 (338)
T ss_pred eecccCceeeEEecc-CCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceE
Confidence 456778999999999 8999999999999999998732 4455554443 345678999999999999999999
Q ss_pred EEEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCC
Q 005352 554 YMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPK 633 (701)
Q Consensus 554 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~ 633 (701)
++||..... +..-|+| ....+..+.|.|. ...+.+++.|+
T Consensus 291 yvwd~~~r~---------------------~lyklpG---------------h~gsvn~~~Fhp~----e~iils~~sdk 330 (338)
T KOG0265|consen 291 YVWDTTSRR---------------------ILYKLPG---------------HYGSVNEVDFHPT----EPIILSCSSDK 330 (338)
T ss_pred EEeeccccc---------------------EEEEcCC---------------cceeEEEeeecCC----CcEEEEeccCc
Confidence 999976543 1112222 2345667788886 55667788888
Q ss_pred ccc
Q 005352 634 GCA 636 (701)
Q Consensus 634 ~~~ 636 (701)
++.
T Consensus 331 ~i~ 333 (338)
T KOG0265|consen 331 TIY 333 (338)
T ss_pred eeE
Confidence 775
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=275.97 Aligned_cols=276 Identities=21% Similarity=0.322 Sum_probs=233.6
Q ss_pred eeeecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeee
Q 005352 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLT 286 (701)
Q Consensus 207 ~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~ 286 (701)
.+..+.+..+++|+..|.+.+|+...- .-...+++|..+|.+|.|+++|.+++||+.+|.|++|+..-+.
T Consensus 102 v~WtPeGRRLltgs~SGEFtLWNg~~f-------nFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn--- 171 (464)
T KOG0284|consen 102 VRWTPEGRRLLTGSQSGEFTLWNGTSF-------NFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN--- 171 (464)
T ss_pred EEEcCCCceeEeecccccEEEecCcee-------eHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh---
Confidence 344567789999999999999974221 1122478899999999999999999999999999999975432
Q ss_pred eecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCC-ccCeEEEEEecC
Q 005352 287 EVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGH-SGEILDLSWSKN 365 (701)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~I~~l~~s~~ 365 (701)
++.+++| ...|++++|+|+
T Consensus 172 ------------------------------------------------------------Vk~~~ahh~eaIRdlafSpn 191 (464)
T KOG0284|consen 172 ------------------------------------------------------------VKIIQAHHAEAIRDLAFSPN 191 (464)
T ss_pred ------------------------------------------------------------hHHhhHhhhhhhheeccCCC
Confidence 2223444 489999999998
Q ss_pred C-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEE-EEecCCCcEEEE
Q 005352 366 N-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAV 442 (701)
Q Consensus 366 ~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~-~~~~~~~~i~~i 442 (701)
+ .|++++.||+|+|||....+....+. |.-.|.+++|+| ...++++|+.|..|++||.+++.++ ....|+..|+.+
T Consensus 192 DskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP-~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~ 270 (464)
T KOG0284|consen 192 DSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHP-TKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAV 270 (464)
T ss_pred CceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCC-ccceeEEccCCceeEeecCCCcchhhhhhhccceEEEE
Confidence 8 99999999999999998887766665 888999999999 8889999999999999999999988 566789999999
Q ss_pred EEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCC-ccce
Q 005352 443 CYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP-NVIG 521 (701)
Q Consensus 443 ~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~-~~~~ 521 (701)
.|+|++++|++++.|..+++||+++.+... ....|...++++.|+|-...+|.+|+.||.|..|.+. +...
T Consensus 271 ~f~~n~N~Llt~skD~~~kv~DiR~mkEl~--------~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~ 342 (464)
T KOG0284|consen 271 KFNPNGNWLLTGSKDQSCKVFDIRTMKELF--------TYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPL 342 (464)
T ss_pred EEcCCCCeeEEccCCceEEEEehhHhHHHH--------HhhcchhhheeeccccccccceeeccCCCceEEEeccccccc
Confidence 999999999999999999999999543221 2455778899999999999999999999999999987 3233
Q ss_pred eeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 005352 522 KYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGH 561 (701)
Q Consensus 522 ~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~ 561 (701)
......|...|.+++|+|-|..|++|+.|.++++|.-.-+
T Consensus 343 ~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~rp 382 (464)
T KOG0284|consen 343 GEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNRP 382 (464)
T ss_pred cCCCcccccceeeeeccccceeEeecCCCcceeeeccCCC
Confidence 3344569999999999999999999999999999975443
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-32 Score=256.44 Aligned_cols=287 Identities=18% Similarity=0.277 Sum_probs=243.5
Q ss_pred cccCccee--eecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEE
Q 005352 201 DKQGEGER--VRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQ 278 (701)
Q Consensus 201 ~~~~~~~~--~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd 278 (701)
.|.+++.. +.+++..+++|+.|..|.+|+.....+.+ ..+++|.++|..+.|.+|+..|+++|.|.+|+.||
T Consensus 45 gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~------~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD 118 (338)
T KOG0265|consen 45 GHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENF------WVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWD 118 (338)
T ss_pred CCcceEEEEEECCCCCeEeecCCcceEEEEeccccccce------eeeccccceeEeeeeccCCCEEEEecCCceEEEEe
Confidence 57778765 55666788999999999999965444333 34678999999999999999999999999999999
Q ss_pred eecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeE
Q 005352 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEIL 358 (701)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~ 358 (701)
++++++ +..+++|..-|.
T Consensus 119 ~~tG~~--------------------------------------------------------------~rk~k~h~~~vN 136 (338)
T KOG0265|consen 119 AETGKR--------------------------------------------------------------IRKHKGHTSFVN 136 (338)
T ss_pred ccccee--------------------------------------------------------------eehhccccceee
Confidence 999864 345578999999
Q ss_pred EEEEecCC--eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEE-EEecC
Q 005352 359 DLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDI 435 (701)
Q Consensus 359 ~l~~s~~~--~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~-~~~~~ 435 (701)
.+.-+.-| ++.+++.|++++|||+++..+++++.....++++.|.. ....+++|+.|+.|++||++..... ...+|
T Consensus 137 s~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d-~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh 215 (338)
T KOG0265|consen 137 SLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKD-TSDQVISGGIDNDIKVWDLRKNDGLYTLSGH 215 (338)
T ss_pred ecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecc-cccceeeccccCceeeeccccCcceEEeecc
Confidence 98855556 78899999999999999999999999899999999998 8899999999999999999988776 56689
Q ss_pred CCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEe
Q 005352 436 RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQ 515 (701)
Q Consensus 436 ~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd 515 (701)
.++|+.+..+|+|.++++-+.|.++++||++.........................+.|+| ++..+.+|+.|..+++||
T Consensus 216 ~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp-~~~~i~ags~dr~vyvwd 294 (338)
T KOG0265|consen 216 ADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSP-NGTKITAGSADRFVYVWD 294 (338)
T ss_pred cCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccC-CCCccccccccceEEEee
Confidence 9999999999999999999999999999998654332211112222233344566788999 789999999999999999
Q ss_pred CCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEe
Q 005352 516 GPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWN 557 (701)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd 557 (701)
.......++..+|.+.|+++.|+|...+|.+++.|.+|++=.
T Consensus 295 ~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 295 TTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred cccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence 998888899999999999999999999999999999998744
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=268.99 Aligned_cols=252 Identities=27% Similarity=0.472 Sum_probs=216.2
Q ss_pred ccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeecccccee
Q 005352 241 YKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISI 320 (701)
Q Consensus 241 ~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (701)
+..+.++.|+..|+-+.||++|+|||||+.|.+..||++.....+
T Consensus 215 qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~----------------------------------- 259 (519)
T KOG0293|consen 215 QTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHF----------------------------------- 259 (519)
T ss_pred hhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcce-----------------------------------
Confidence 344678899999999999999999999999999999998664311
Q ss_pred eEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeecCC--CCe
Q 005352 321 LKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHS--NYV 397 (701)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~h~--~~V 397 (701)
+..+++.+|..+|..|.|||+. +|++|+.|..+++||+.++.+...+.+. ..+
T Consensus 260 ------------------------kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~ 315 (519)
T KOG0293|consen 260 ------------------------KLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSV 315 (519)
T ss_pred ------------------------eeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCc
Confidence 4567889999999999999999 9999999999999999999999999855 889
Q ss_pred EEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCC-CcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeE
Q 005352 398 TCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIR-QIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEI 476 (701)
Q Consensus 398 ~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~-~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~ 476 (701)
.+++|.| |+..|++|+.|+.+..||+.....-.|.+.+ ..|.++++++||+++++.+.|..+++|+..+....
T Consensus 316 ~sc~W~p-Dg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr----- 389 (519)
T KOG0293|consen 316 SSCAWCP-DGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDR----- 389 (519)
T ss_pred ceeEEcc-CCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhh-----
Confidence 9999999 9999999999999999999877766666654 45999999999999999999999999998764321
Q ss_pred EeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCcc--ceeeecccCCCCeEEEEEec-CCCEEEEEeCCCcE
Q 005352 477 CVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV--IGKYKGLRRSGNQLSACFTS-DGKHIVSAGEDSNV 553 (701)
Q Consensus 477 ~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~--~~~~~~~~~~~~v~~l~~s~-dg~~l~sgs~Dg~I 553 (701)
.......+|++++++. ++.++++.-.+..|++||+... ..+|.++.....+..-||-- +..++++||+|+.|
T Consensus 390 ----~lise~~~its~~iS~-d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kv 464 (519)
T KOG0293|consen 390 ----GLISEEQPITSFSISK-DGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKV 464 (519)
T ss_pred ----ccccccCceeEEEEcC-CCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceE
Confidence 1333457899999999 7999999999999999999854 45566666666777778865 45899999999999
Q ss_pred EEEeCCCCC
Q 005352 554 YMWNCIGHE 562 (701)
Q Consensus 554 ~iWd~~~~~ 562 (701)
|||+..+++
T Consensus 465 yIWhr~sgk 473 (519)
T KOG0293|consen 465 YIWHRISGK 473 (519)
T ss_pred EEEEccCCc
Confidence 999988776
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-31 Score=274.46 Aligned_cols=427 Identities=15% Similarity=0.210 Sum_probs=298.8
Q ss_pred ccCcceeeecCc--cccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEe
Q 005352 202 KQGEGERVRLNE--EDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQV 279 (701)
Q Consensus 202 ~~~~~~~~~~~~--~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~ 279 (701)
+-.++.++...+ ..+++|+.|-.++||..+.... .....+.+|++.|.++-|..+..-|.|.+.||.+.+|..
T Consensus 144 ~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~-----~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~ 218 (893)
T KOG0291|consen 144 HFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKN-----LFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTC 218 (893)
T ss_pred CccceeEEEeccCCceEEeccccceEEEEEeccccc-----cceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEe
Confidence 344555555544 4677799999999999875443 223457789999999999999999999999999999998
Q ss_pred ecCee--eee---ecC---------CCCCCcee-------EEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCc
Q 005352 280 VEDER--LTE---VDI---------PEIDPSCI-------YFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPK 338 (701)
Q Consensus 280 ~~~~~--~~~---~~~---------~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (701)
..... ... ... .+...... .+.......+.+..+.+ ......+.|...
T Consensus 219 ~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~-----------~t~~lvvgFssG 287 (893)
T KOG0291|consen 219 DLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHK-----------GTNLLVVGFSSG 287 (893)
T ss_pred cCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccC-----------CceEEEEEecCC
Confidence 73210 000 000 00000000 00000101111111111 112222334444
Q ss_pred cccccC----CCeEEEcCCccCeEEEEEecCC-eEEEEEC-CCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEE
Q 005352 339 VFRILE----KPLHEFHGHSGEILDLSWSKNN-YLLSASI-DKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFI 411 (701)
Q Consensus 339 ~~~~~~----~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~-dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~ 411 (701)
.|.+.+ ..++.+.-....|..++|+..| .|+.|+. -|.+-||+..+...+...+ |...+++++++| |+.+++
T Consensus 288 ~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSp-Dgq~ia 366 (893)
T KOG0291|consen 288 EFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSP-DGQLIA 366 (893)
T ss_pred eeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECC-CCcEEE
Confidence 443332 3466666667889999999888 7766654 5899999999887766555 999999999999 999999
Q ss_pred EEEcCCcEEEEeCCCCcEE-EEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCee
Q 005352 412 SGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRIT 490 (701)
Q Consensus 412 sgs~dg~v~iwd~~~~~~~-~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~ 490 (701)
+|+.||+|+|||..++-+. .+..|...|+.++|+..|+.+++.+.||+|+.||+........ ...+......
T Consensus 367 TG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRT-------ft~P~p~Qfs 439 (893)
T KOG0291|consen 367 TGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRT-------FTSPEPIQFS 439 (893)
T ss_pred eccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeee-------ecCCCceeee
Confidence 9999999999999999877 5667999999999999999999999999999999986543221 1222334567
Q ss_pred EEEEecCCCCEEEEEECCC-cEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCCCCcccc
Q 005352 491 GFQFLPQDSSKVMVSCADS-QVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQA 569 (701)
Q Consensus 491 ~l~~~p~~~~~l~~~s~dg-~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~ 569 (701)
+++..| .+.++.+|+.|. .|.+|++.+....-...+|.++|.+++|+|++..|+++|.|.+|++||+-.....
T Consensus 440 cvavD~-sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~----- 513 (893)
T KOG0291|consen 440 CVAVDP-SGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGT----- 513 (893)
T ss_pred EEEEcC-CCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCce-----
Confidence 888888 688888888875 5999999988777667779999999999999999999999999999998765310
Q ss_pred ccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCCcccCCCCccCCCCccc
Q 005352 570 KTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQL 649 (701)
Q Consensus 570 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~ 649 (701)
...+ ...+.+..+.|.|+ +..++....||.+.+|+.+....+..+
T Consensus 514 --vEtl-----------------------------~i~sdvl~vsfrPd----G~elaVaTldgqItf~d~~~~~q~~~I 558 (893)
T KOG0291|consen 514 --VETL-----------------------------EIRSDVLAVSFRPD----GKELAVATLDGQITFFDIKEAVQVGSI 558 (893)
T ss_pred --eeeE-----------------------------eeccceeEEEEcCC----CCeEEEEEecceEEEEEhhhceeeccc
Confidence 0011 11234566788998 677778889999999998877655444
Q ss_pred cccccc---hhhhhhhh-----hcc-cccccccCCCccEEEEecCCCeEeEEee
Q 005352 650 SSASAL---HKSQYKFL-----KSS-CLCTTSSHAWGLVIVTAGWDGRIRSFLN 694 (701)
Q Consensus 650 ~~~~~~---~~~~~~~~-----~~~-~~~~~~~~~~g~~ivTgg~DG~Irvw~~ 694 (701)
.+-..+ +.....+. ++. ..+++.+.| |..|++||....|++|+.
T Consensus 559 dgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaD-G~~IlAgG~sn~iCiY~v 611 (893)
T KOG0291|consen 559 DGRKDLSGGRKETDRITAENSAKGKTFTTICYSAD-GKCILAGGESNSICIYDV 611 (893)
T ss_pred cchhhccccccccceeehhhcccCCceEEEEEcCC-CCEEEecCCcccEEEEEC
Confidence 321100 11000000 111 224566777 999999999999999873
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-32 Score=260.13 Aligned_cols=294 Identities=18% Similarity=0.314 Sum_probs=241.3
Q ss_pred ceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEE
Q 005352 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (701)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (701)
+.+++|.+.|.|+++.|.+++++||+.|++|+|||+.+++.
T Consensus 145 rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~L--------------------------------------- 185 (460)
T KOG0285|consen 145 RVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQL--------------------------------------- 185 (460)
T ss_pred hhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeE---------------------------------------
Confidence 45788999999999999999999999999999999999863
Q ss_pred eeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEE
Q 005352 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVH 401 (701)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~ 401 (701)
..++.||...|..+++|+-. ||++++.|+.|+.||++..+.++.+. |-..|.|++
T Consensus 186 -----------------------kltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~ 242 (460)
T KOG0285|consen 186 -----------------------KLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLD 242 (460)
T ss_pred -----------------------EEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEe
Confidence 34567899999999999998 99999999999999999999988875 999999999
Q ss_pred EeeCCCCEEEEEEcCCcEEEEeCCCCcEE-EEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeec
Q 005352 402 FNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHS 480 (701)
Q Consensus 402 f~p~~~~~l~sgs~dg~v~iwd~~~~~~~-~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~ 480 (701)
.+| .-+.|++|+.|.++||||+++...+ .+.+|..+|..+.+.|-...+++|+.|++|++||++.++-...
T Consensus 243 lhP-Tldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~t------- 314 (460)
T KOG0285|consen 243 LHP-TLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMIT------- 314 (460)
T ss_pred ccc-cceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEe-------
Confidence 999 8899999999999999999998777 4557999999999999888999999999999999998875432
Q ss_pred ccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 005352 481 KKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIG 560 (701)
Q Consensus 481 ~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~ 560 (701)
...|...+.+++.+| ....+++++.| .|+-|++...........|...|++++...|| ++++|+++|.+.+||.++
T Consensus 315 -lt~hkksvral~lhP-~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwks 390 (460)
T KOG0285|consen 315 -LTHHKKSVRALCLHP-KENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKS 390 (460)
T ss_pred -eecccceeeEEecCC-chhhhhccCCc-cceeccCCccchhhccccccceeeeeeeccCc-eEEEcCCceEEEEEecCc
Confidence 234557799999999 55666666655 78999998766655566688999999998775 789999999999999998
Q ss_pred CCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCCcccCCCC
Q 005352 561 HEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPE 640 (701)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~ 640 (701)
+..-...+.. .-. ........+...||.-. +..++++..|++|++|.+
T Consensus 391 g~nyQ~~~t~----------------vqp------------GSl~sEagI~as~fDkt----g~rlit~eadKtIk~~ke 438 (460)
T KOG0285|consen 391 GHNYQRGQTI----------------VQP------------GSLESEAGIFASCFDKT----GSRLITGEADKTIKMYKE 438 (460)
T ss_pred Cccccccccc----------------ccC------------CccccccceeEEeeccc----CceEEeccCCcceEEEec
Confidence 8632211100 000 00112334455566553 778999999999999987
Q ss_pred ccC
Q 005352 641 EKL 643 (701)
Q Consensus 641 ~~~ 643 (701)
+.-
T Consensus 439 De~ 441 (460)
T KOG0285|consen 439 DEH 441 (460)
T ss_pred ccc
Confidence 654
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-32 Score=284.68 Aligned_cols=240 Identities=27% Similarity=0.461 Sum_probs=206.3
Q ss_pred eecCccccccccccceEEEEEccCcc-------chh-----------------hhcccCceeccCCCcEEEEEEccCCCE
Q 005352 209 VRLNEEDAMFCSKVQRVKVYHCKKRS-------KEL-----------------SALYKGQEIQAHDGSILTMKFSPDGQY 264 (701)
Q Consensus 209 ~~~~~~~~~~~~~d~~v~vw~~~~~~-------~~~-----------------~~~~~~~~l~~H~~~I~~l~fspdg~~ 264 (701)
++.+...++.|-.|..|++|.+.... ..+ .......++.||.++|..+.|+|+.++
T Consensus 386 fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd~rf 465 (707)
T KOG0263|consen 386 FSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSPDRRF 465 (707)
T ss_pred ecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeecccccc
Confidence 44444567778899999999987311 011 111223458899999999999999999
Q ss_pred EEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccC
Q 005352 265 LASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILE 344 (701)
Q Consensus 265 Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (701)
|+++++|++||+|.+.+..
T Consensus 466 LlScSED~svRLWsl~t~s------------------------------------------------------------- 484 (707)
T KOG0263|consen 466 LLSCSEDSSVRLWSLDTWS------------------------------------------------------------- 484 (707)
T ss_pred eeeccCCcceeeeecccce-------------------------------------------------------------
Confidence 9999999999999998864
Q ss_pred CCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEE
Q 005352 345 KPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIW 422 (701)
Q Consensus 345 ~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iw 422 (701)
.+-.++||..+|.++.|+|.| ||+|+|.|++.++|.....++++.|. |-+.|.|++|+| +.+|+++|+.|.+||+|
T Consensus 485 -~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHP-Ns~Y~aTGSsD~tVRlW 562 (707)
T KOG0263|consen 485 -CLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHP-NSNYVATGSSDRTVRLW 562 (707)
T ss_pred -eEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECC-cccccccCCCCceEEEE
Confidence 234567999999999999999 99999999999999999999999987 999999999999 99999999999999999
Q ss_pred eCCCCcEEE-EecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCE
Q 005352 423 AVLSCHVVD-WVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSK 501 (701)
Q Consensus 423 d~~~~~~~~-~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~ 501 (701)
|+.++..+. +.+|.++|++++|+|+|++|++|+.||.|.+||+.++.+.. ....|...|.++.|+. ++..
T Consensus 563 Dv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~--------~l~~Ht~ti~SlsFS~-dg~v 633 (707)
T KOG0263|consen 563 DVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVK--------QLKGHTGTIYSLSFSR-DGNV 633 (707)
T ss_pred EcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchh--------hhhcccCceeEEEEec-CCCE
Confidence 999998885 45799999999999999999999999999999999876543 2345578899999999 8999
Q ss_pred EEEEECCCcEEEEeCCccc
Q 005352 502 VMVSCADSQVRILQGPNVI 520 (701)
Q Consensus 502 l~~~s~dg~I~iwd~~~~~ 520 (701)
|++|+.|++|++||+....
T Consensus 634 Lasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 634 LASGGADNSVRLWDLTKVI 652 (707)
T ss_pred EEecCCCCeEEEEEchhhc
Confidence 9999999999999976433
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-31 Score=262.46 Aligned_cols=289 Identities=19% Similarity=0.297 Sum_probs=235.2
Q ss_pred cccCcceeeecCc--c-ccccccccceEEEEEccCccch--hhh-cccCceecc----CCCcEEEEEEccCCCEEEEEeC
Q 005352 201 DKQGEGERVRLNE--E-DAMFCSKVQRVKVYHCKKRSKE--LSA-LYKGQEIQA----HDGSILTMKFSPDGQYLASAGD 270 (701)
Q Consensus 201 ~~~~~~~~~~~~~--~-~~~~~~~d~~v~vw~~~~~~~~--~~~-~~~~~~l~~----H~~~I~~l~fspdg~~Lasgs~ 270 (701)
.|..++.....++ + .++.++.+-..++|++...... ... +.....+-+ .+..|++++|+.+|..||+|+.
T Consensus 176 ~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~ 255 (524)
T KOG0273|consen 176 RHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSE 255 (524)
T ss_pred cCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeec
Confidence 4556665544444 4 5677899999999998641111 100 111101111 2357999999999999999999
Q ss_pred CCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEE
Q 005352 271 DGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEF 350 (701)
Q Consensus 271 Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (701)
||.++||+.... .+.+|
T Consensus 256 ~G~~riw~~~G~---------------------------------------------------------------l~~tl 272 (524)
T KOG0273|consen 256 DGEARIWNKDGN---------------------------------------------------------------LISTL 272 (524)
T ss_pred CcEEEEEecCch---------------------------------------------------------------hhhhh
Confidence 999999997543 24456
Q ss_pred cCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCc
Q 005352 351 HGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH 428 (701)
Q Consensus 351 ~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~ 428 (701)
..|+++|.+|+|+..| ||++++.|+++.+||..++...+.|. |..+-..+.|- +...|++.+.|+.|+|+.+....
T Consensus 273 ~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~--~~~~F~ts~td~~i~V~kv~~~~ 350 (524)
T KOG0273|consen 273 GQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQ--SNDEFATSSTDGCIHVCKVGEDR 350 (524)
T ss_pred hccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEe--cCceEeecCCCceEEEEEecCCC
Confidence 7799999999999999 99999999999999999999999998 66665788996 57789999999999999997665
Q ss_pred EE-EEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecC--------CC
Q 005352 429 VV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQ--------DS 499 (701)
Q Consensus 429 ~~-~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~--------~~ 499 (701)
++ .+.+|.+.|.++.|+|.|..|++++.|++++||.+....... ....|...|..+.|+|. .+
T Consensus 351 P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~--------~l~~Hskei~t~~wsp~g~v~~n~~~~ 422 (524)
T KOG0273|consen 351 PVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVH--------DLQAHSKEIYTIKWSPTGPVTSNPNMN 422 (524)
T ss_pred cceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchh--------hhhhhccceeeEeecCCCCccCCCcCC
Confidence 55 777899999999999999999999999999999987654321 13445567777888774 45
Q ss_pred CEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 500 SKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 500 ~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
..+++++.|++|++||+....+.+....|..+|++++|+|+|+|+|+|+.||.|.||+..+++
T Consensus 423 ~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~ 485 (524)
T KOG0273|consen 423 LMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGK 485 (524)
T ss_pred ceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchh
Confidence 689999999999999999999999998999999999999999999999999999999999887
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-31 Score=253.37 Aligned_cols=324 Identities=14% Similarity=0.163 Sum_probs=260.9
Q ss_pred eeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEe
Q 005352 245 EIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSL 324 (701)
Q Consensus 245 ~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (701)
.|..|+++|++++.+|+.+++||||.|....||++.++.
T Consensus 59 tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge----------------------------------------- 97 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGE----------------------------------------- 97 (399)
T ss_pred ehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCc-----------------------------------------
Confidence 466799999999999999999999999999999998874
Q ss_pred eecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEE
Q 005352 325 RRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHF 402 (701)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f 402 (701)
....+.+|++.|+++.|+.++ +|+||..+|.|+||...++.....+. .-..+.=+.|
T Consensus 98 ---------------------~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~W 156 (399)
T KOG0296|consen 98 ---------------------FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKW 156 (399)
T ss_pred ---------------------ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEe
Confidence 235668999999999999999 99999999999999999998888775 5566788999
Q ss_pred eeCCCCEEEEEEcCCcEEEEeCCCC-cEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecc
Q 005352 403 NPVDDNYFISGSIDGKVRIWAVLSC-HVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSK 481 (701)
Q Consensus 403 ~p~~~~~l~sgs~dg~v~iwd~~~~-~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~ 481 (701)
+| ...+|++|+.||.+-+|.+.++ .+..+.+|..++++=.|.|+|+.++++..||+|++|++.+++.....
T Consensus 157 Hp-~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~------- 228 (399)
T KOG0296|consen 157 HP-RAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKI------- 228 (399)
T ss_pred cc-cccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEe-------
Confidence 99 9999999999999999999995 44466789999999999999999999999999999999998764322
Q ss_pred cCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecc--------cCCC---CeEEEEEecCCCEEEEEeCC
Q 005352 482 KKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGL--------RRSG---NQLSACFTSDGKHIVSAGED 550 (701)
Q Consensus 482 ~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~--------~~~~---~v~~l~~s~dg~~l~sgs~D 550 (701)
........+++.++. .+..++.|+.++.+++.+....+...-.. .+.. .|-++.|+..-.+.|+|+-|
T Consensus 229 ~~~e~~~~~~~~~~~-~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vd 307 (399)
T KOG0296|consen 229 TQAEGLELPCISLNL-AGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVD 307 (399)
T ss_pred cccccCcCCcccccc-ccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhccccc
Confidence 111234456677766 67888888888888888765433322221 1333 34445555566788999999
Q ss_pred CcEEEEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccC
Q 005352 551 SNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFES 630 (701)
Q Consensus 551 g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s 630 (701)
|+|.|||+...... ....+..++..+.|.+ ...++++.
T Consensus 308 G~i~iyD~a~~~~R-------------------------------------~~c~he~~V~~l~w~~-----t~~l~t~c 345 (399)
T KOG0296|consen 308 GTIAIYDLAASTLR-------------------------------------HICEHEDGVTKLKWLN-----TDYLLTAC 345 (399)
T ss_pred ceEEEEecccchhh-------------------------------------eeccCCCceEEEEEcC-----cchheeec
Confidence 99999998766521 1111233455556655 35678889
Q ss_pred CCCcccCCCCccCCCCccccccccchhhhhhhhhcccccccccCCCccEEEEecCCCeEeEEe
Q 005352 631 FPKGCATWPEEKLPALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFL 693 (701)
Q Consensus 631 ~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivTgg~DG~Irvw~ 693 (701)
.++.++.|+.+.+.+.....+| +..|++++++++ .+.|||++.|++-+||.
T Consensus 346 ~~g~v~~wDaRtG~l~~~y~GH-----------~~~Il~f~ls~~-~~~vvT~s~D~~a~VF~ 396 (399)
T KOG0296|consen 346 ANGKVRQWDARTGQLKFTYTGH-----------QMGILDFALSPQ-KRLVVTVSDDNTALVFE 396 (399)
T ss_pred cCceEEeeeccccceEEEEecC-----------chheeEEEEcCC-CcEEEEecCCCeEEEEe
Confidence 9999999999999998888888 568899999999 99999999999999996
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-31 Score=257.26 Aligned_cols=298 Identities=21% Similarity=0.366 Sum_probs=253.3
Q ss_pred HHHHHhHHhhhccceeeecccCcceeeecCccc--cccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEcc
Q 005352 183 ERVKKRWFSRLRSLACVVDKQGEGERVRLNEED--AMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSP 260 (701)
Q Consensus 183 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp 260 (701)
++....|..+.....++..+...+..+-+.+.. .++++.|.+|++||+..... ...++||+..|..|.|+.
T Consensus 88 ~~~~~~wipRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~-------e~~LrGHt~sv~di~~~a 160 (406)
T KOG0295|consen 88 KRTPALWIPRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGEL-------ERSLRGHTDSVFDISFDA 160 (406)
T ss_pred ccChhhcCCCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhh-------hhhhhccccceeEEEEec
Confidence 444455666655455555566666665555544 44567799999999765433 245889999999999999
Q ss_pred CCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccc
Q 005352 261 DGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVF 340 (701)
Q Consensus 261 dg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (701)
.|++||+++.|=.+++||..+..
T Consensus 161 ~Gk~l~tcSsDl~~~LWd~~~~~--------------------------------------------------------- 183 (406)
T KOG0295|consen 161 SGKYLATCSSDLSAKLWDFDTFF--------------------------------------------------------- 183 (406)
T ss_pred CccEEEecCCccchhheeHHHHH---------------------------------------------------------
Confidence 99999999999999999987632
Q ss_pred cccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCc
Q 005352 341 RILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGK 418 (701)
Q Consensus 341 ~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~ 418 (701)
..+..+.+|...|.+++|-|.| ++++++.|.+|+.|++.++.|+.+|. |...|..++.+. |+.++++++.|.+
T Consensus 184 ----~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~-DGti~As~s~dqt 258 (406)
T KOG0295|consen 184 ----RCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQ-DGTIIASCSNDQT 258 (406)
T ss_pred ----HHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecC-CeeEEEecCCCce
Confidence 2344567899999999999999 99999999999999999999999998 889999999998 9999999999999
Q ss_pred EEEEeCCCCcEE-EEecCCCcEEEEEEeeC---------------CCeEEEEecCCcEEEEECCCCeeeeeeeEEeeccc
Q 005352 419 VRIWAVLSCHVV-DWVDIRQIVTAVCYRPD---------------GQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKK 482 (701)
Q Consensus 419 v~iwd~~~~~~~-~~~~~~~~i~~i~~sp~---------------g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~ 482 (701)
|++|-+.++++. ....|+.+|.+++|.|. ++++.+++.|++|++||+.++.+.+. .
T Consensus 259 l~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~t--------L 330 (406)
T KOG0295|consen 259 LRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFT--------L 330 (406)
T ss_pred EEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEE--------E
Confidence 999999998766 45678889999999773 35899999999999999999977653 4
Q ss_pred CCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 005352 483 KAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNC 558 (701)
Q Consensus 483 ~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~ 558 (701)
.+|...|.+++|+| .|++|+++..|+++++||+++..+......|..-++++.|+.+..|++||+-|..+++|..
T Consensus 331 ~ghdnwVr~~af~p-~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 331 VGHDNWVRGVAFSP-GGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred ecccceeeeeEEcC-CCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 56779999999999 8999999999999999999988887777789999999999999999999999999999974
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-30 Score=239.83 Aligned_cols=280 Identities=21% Similarity=0.295 Sum_probs=226.0
Q ss_pred CEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccc
Q 005352 263 QYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRI 342 (701)
Q Consensus 263 ~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (701)
-+|+|+|.|.+||+|...+|.+..++
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTi------------------------------------------------------ 36 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTI------------------------------------------------------ 36 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEE------------------------------------------------------
Confidence 48999999999999999999765544
Q ss_pred cCCCeEEEcCCccCeEEEEEecCCeEEEEECCCcEEEEECCCCe--eeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcE
Q 005352 343 LEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDH--CLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKV 419 (701)
Q Consensus 343 ~~~~~~~~~~h~~~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~--~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v 419 (701)
+...+.|..|...|++..+++.....||+||+++++ ++.+|. |...|+.+.|.. +++.+++|+.||++
T Consensus 37 --------qh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~-dgrWMyTgseDgt~ 107 (311)
T KOG0315|consen 37 --------QHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQC-DGRWMYTGSEDGTV 107 (311)
T ss_pred --------ecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCceEEEEEee-cCeEEEecCCCceE
Confidence 334567999999999944444445689999999875 466666 889999999999 99999999999999
Q ss_pred EEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCC
Q 005352 420 RIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDS 499 (701)
Q Consensus 420 ~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~ 499 (701)
+|||++...+...+.+..+|+++..+|+...|++|..+|.|++||+....+... ........|.++...| ++
T Consensus 108 kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~-------liPe~~~~i~sl~v~~-dg 179 (311)
T KOG0315|consen 108 KIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHE-------LIPEDDTSIQSLTVMP-DG 179 (311)
T ss_pred EEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccc-------cCCCCCcceeeEEEcC-CC
Confidence 999999988888889999999999999999999999999999999998754322 2233346799999999 89
Q ss_pred CEEEEEECCCcEEEEeCCc------cceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCCCCcccccccc
Q 005352 500 SKVMVSCADSQVRILQGPN------VIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIR 573 (701)
Q Consensus 500 ~~l~~~s~dg~I~iwd~~~------~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~ 573 (701)
.+++++...|..++|++-. .....+...|.+.+..+.+|||++||+++|.|.+++||+.++.- . ....+.
T Consensus 180 sml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~-k---le~~l~ 255 (311)
T KOG0315|consen 180 SMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFF-K---LELVLT 255 (311)
T ss_pred cEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCce-e---eEEEee
Confidence 9999999999999999753 22333344589999999999999999999999999999988761 1 111111
Q ss_pred ccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCCcccCCCCccCCCCcccccc
Q 005352 574 SLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLSSA 652 (701)
Q Consensus 574 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~~ 652 (701)
..+. =+-..+||.+ +.++++++.|..+++|+.+....+.+.++|
T Consensus 256 gh~r-------------------------------WvWdc~FS~d----g~YlvTassd~~~rlW~~~~~k~v~qy~gh 299 (311)
T KOG0315|consen 256 GHQR-------------------------------WVWDCAFSAD----GEYLVTASSDHTARLWDLSAGKEVRQYQGH 299 (311)
T ss_pred cCCc-------------------------------eEEeeeeccC----ccEEEecCCCCceeecccccCceeeecCCc
Confidence 1100 0112356665 889999999999999999999988888777
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.9e-30 Score=268.42 Aligned_cols=444 Identities=18% Similarity=0.250 Sum_probs=319.1
Q ss_pred eeeecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeee
Q 005352 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLT 286 (701)
Q Consensus 207 ~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~ 286 (701)
..++.+++.+++... ..|.+-+.......+.. .-..-...|++++.+||+.+|++++..+.+++|++.+++.+.
T Consensus 25 ~~~s~nG~~L~t~~~-d~Vi~idv~t~~~~l~s-----~~~ed~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~ir 98 (775)
T KOG0319|consen 25 VAWSSNGQHLYTACG-DRVIIIDVATGSIALPS-----GSNEDEDEITALALTPDEEVLVTASRSQLLRVWSLPTGKLIR 98 (775)
T ss_pred eeECCCCCEEEEecC-ceEEEEEccCCceeccc-----CCccchhhhheeeecCCccEEEEeeccceEEEEEcccchHhH
Confidence 556667776665443 44556555443321111 122356689999999999999999999999999999999888
Q ss_pred eecC-CCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecC
Q 005352 287 EVDI-PEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN 365 (701)
Q Consensus 287 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~ 365 (701)
.++. ++.|...+.+.+.. . .+ ..++.++...+++... +...+.|+||.+.|..+.|+|+
T Consensus 99 swKa~He~Pvi~ma~~~~g--~------------Ll--AtggaD~~v~VWdi~~----~~~th~fkG~gGvVssl~F~~~ 158 (775)
T KOG0319|consen 99 SWKAIHEAPVITMAFDPTG--T------------LL--ATGGADGRVKVWDIKN----GYCTHSFKGHGGVVSSLLFHPH 158 (775)
T ss_pred hHhhccCCCeEEEEEcCCC--c------------eE--EeccccceEEEEEeeC----CEEEEEecCCCceEEEEEeCCc
Confidence 8876 44444333333322 1 11 1122223333332221 2567899999999999999998
Q ss_pred C---eEEEEECCCcEEEEECCCCee-eeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcEE
Q 005352 366 N---YLLSASIDKTVRLWRVGNDHC-LRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVT 440 (701)
Q Consensus 366 ~---~l~s~s~dg~I~iWd~~~~~~-~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~ 440 (701)
- .|++|..|++|++||+++... +.+.. |.+.|++++|.+ ++..+++++.|..+.|||+.+.+..........+-
T Consensus 159 ~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~-d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E 237 (775)
T KOG0319|consen 159 WNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSE-DSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLE 237 (775)
T ss_pred cchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeecc-CCceEEEeccCcEEEEeehhhhhhhheechhhhee
Confidence 6 789999999999999986544 55554 999999999999 89999999999999999998888888888888899
Q ss_pred EEEEeeC-----CCeEEEEecCCcEEEEECCCCeeeeee-----------------------------------eEEeec
Q 005352 441 AVCYRPD-----GQGGIVGSMMGDCRFYNVSDNHLELDA-----------------------------------EICVHS 480 (701)
Q Consensus 441 ~i~~sp~-----g~~l~~gs~dg~v~i~d~~~~~~~~~~-----------------------------------~~~~~~ 480 (701)
++.+-++ +.++++++.+|.+++||..+.+..... .+.+..
T Consensus 238 ~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k 317 (775)
T KOG0319|consen 238 SVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVK 317 (775)
T ss_pred eEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEeh
Confidence 9999887 779999999999999998765432211 111222
Q ss_pred ccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 005352 481 KKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIG 560 (701)
Q Consensus 481 ~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~ 560 (701)
...+....|..++|.-.+.+++++++..+.+++|+..+.... -..+|...|.++....+|.+|+||+.|.++++|.+++
T Consensus 318 ~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~ 396 (775)
T KOG0319|consen 318 QIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNN 396 (775)
T ss_pred hhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEEEEEecC
Confidence 233455678888887668899999999999999998876655 3445999999999777889999999999999999955
Q ss_pred CCCCCc------cccccccccccccCCceE--EecCCCC-CCCCCCCC------Cc-----cccCCCCCCCccccCCCcc
Q 005352 561 HEEPAH------DQAKTIRSLERFTTNASI--AIPWCGL-KCGNAEKE------PQ-----LHVSDDDSPENLAFAPARF 620 (701)
Q Consensus 561 ~~~~~~------~~~~~~~~~~~~~~~~~~--a~~~~~~-~~~~~~~~------~~-----~~~~~~~~~~~l~~sp~~~ 620 (701)
+..... ....++..+....-.... .++-.++ +.|....+ .. ....+...++.++.+|.
T Consensus 397 ~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~n-- 474 (775)
T KOG0319|consen 397 NCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPN-- 474 (775)
T ss_pred CcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCC--
Confidence 442111 111222222221112211 1222221 45554431 10 11234556888899995
Q ss_pred ccCccccccCCCCcccCCCCccCCCCccccccccchhhhhhhhhcccccccccCCCccEEEEecCCCeEeEEee
Q 005352 621 SLGQEYVFESFPKGCATWPEEKLPALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFLN 694 (701)
Q Consensus 621 ~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivTgg~DG~Irvw~~ 694 (701)
...++++|.|++.++|+.+.+.....+.+| +..+|++.|++. .++++|++.|++||||..
T Consensus 475 --dkLiAT~SqDktaKiW~le~~~l~~vLsGH-----------~RGvw~V~Fs~~-dq~laT~SgD~TvKIW~i 534 (775)
T KOG0319|consen 475 --DKLIATGSQDKTAKIWDLEQLRLLGVLSGH-----------TRGVWCVSFSKN-DQLLATCSGDKTVKIWSI 534 (775)
T ss_pred --CceEEecccccceeeecccCceEEEEeeCC-----------ccceEEEEeccc-cceeEeccCCceEEEEEe
Confidence 677889999999999999988878888888 568999999999 999999999999999974
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.6e-31 Score=255.41 Aligned_cols=272 Identities=19% Similarity=0.394 Sum_probs=225.9
Q ss_pred ccCcceeeecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeec
Q 005352 202 KQGEGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVE 281 (701)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~ 281 (701)
....+-++.++++.++.|..|++|+|||.+. ......+.||+|.|.|+.|. .+.|++|+.|.+|+|||+++
T Consensus 196 ~skgVYClQYDD~kiVSGlrDnTikiWD~n~-------~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~t 266 (499)
T KOG0281|consen 196 NSKGVYCLQYDDEKIVSGLRDNTIKIWDKNS-------LECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNT 266 (499)
T ss_pred cCCceEEEEecchhhhcccccCceEEecccc-------HHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccC
Confidence 3345678999999999999999999998543 22334578999999999994 56999999999999999999
Q ss_pred CeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEE
Q 005352 282 DERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLS 361 (701)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~ 361 (701)
++ ++.++-+|...|..+.
T Consensus 267 ge--------------------------------------------------------------~l~tlihHceaVLhlr 284 (499)
T KOG0281|consen 267 GE--------------------------------------------------------------PLNTLIHHCEAVLHLR 284 (499)
T ss_pred Cc--------------------------------------------------------------hhhHHhhhcceeEEEE
Confidence 85 4556678999999999
Q ss_pred EecCCeEEEEECCCcEEEEECCCCeeeeee----cCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEE-ecCC
Q 005352 362 WSKNNYLLSASIDKTVRLWRVGNDHCLRVF----PHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDW-VDIR 436 (701)
Q Consensus 362 ~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~----~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~-~~~~ 436 (701)
|+ +|++++++.|.+|.+||+.+...+... .|...|+.+.|+ .+++++++.|.+|++|++.+++.+.. .+|.
T Consensus 285 f~-ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd---~kyIVsASgDRTikvW~~st~efvRtl~gHk 360 (499)
T KOG0281|consen 285 FS-NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD---DKYIVSASGDRTIKVWSTSTCEFVRTLNGHK 360 (499)
T ss_pred Ee-CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc---cceEEEecCCceEEEEeccceeeehhhhccc
Confidence 96 569999999999999999877533222 399999999994 57999999999999999999998854 4678
Q ss_pred CcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeC
Q 005352 437 QIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQG 516 (701)
Q Consensus 437 ~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~ 516 (701)
..|.|+.| .++++++|+.|.+|++||+..+.+.. ...+|..-|.++.| +.+.+++|+.||+|++||+
T Consensus 361 RGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLR--------vLeGHEeLvRciRF---d~krIVSGaYDGkikvWdl 427 (499)
T KOG0281|consen 361 RGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLR--------VLEGHEELVRCIRF---DNKRIVSGAYDGKIKVWDL 427 (499)
T ss_pred ccceehhc--cCeEEEecCCCceEEEEeccccHHHH--------HHhchHHhhhheee---cCceeeeccccceEEEEec
Confidence 88888877 58899999999999999999886532 24556677899999 5689999999999999998
Q ss_pred Cccce---------eeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCC
Q 005352 517 PNVIG---------KYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEE 563 (701)
Q Consensus 517 ~~~~~---------~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~ 563 (701)
..... ......|.+.|..+.| |...|++++.|.+|.|||+.++..
T Consensus 428 ~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 428 QAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNGPP 481 (499)
T ss_pred ccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCCCc
Confidence 74332 2334458889999999 566899999999999999988763
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.3e-29 Score=235.56 Aligned_cols=265 Identities=20% Similarity=0.350 Sum_probs=214.3
Q ss_pred ccccccccceEEEEEccC-ccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCC
Q 005352 215 DAMFCSKVQRVKVYHCKK-RSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEI 293 (701)
Q Consensus 215 ~~~~~~~d~~v~vw~~~~-~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~ 293 (701)
-+++|+.|+.|+||+... ........ .-.+|+..|.+++|+|.|+|||+|+.|.++.||.-..++.
T Consensus 29 ilAscg~Dk~vriw~~~~~~s~~ck~v----ld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~ef--------- 95 (312)
T KOG0645|consen 29 ILASCGTDKAVRIWSTSSGDSWTCKTV----LDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEF--------- 95 (312)
T ss_pred EEEeecCCceEEEEecCCCCcEEEEEe----ccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCce---------
Confidence 578899999999998763 11111111 1137999999999999999999999999999998654431
Q ss_pred CCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEE
Q 005352 294 DPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSAS 372 (701)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s 372 (701)
+.+..+.||..+|.+++|+++| +|++++
T Consensus 96 ---------------------------------------------------ecv~~lEGHEnEVK~Vaws~sG~~LATCS 124 (312)
T KOG0645|consen 96 ---------------------------------------------------ECVATLEGHENEVKCVAWSASGNYLATCS 124 (312)
T ss_pred ---------------------------------------------------eEEeeeeccccceeEEEEcCCCCEEEEee
Confidence 4466789999999999999999 999999
Q ss_pred CCCcEEEEECCCC---eeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCC---cEE-EEecCCCcEEEEEE
Q 005352 373 IDKTVRLWRVGND---HCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSC---HVV-DWVDIRQIVTAVCY 444 (701)
Q Consensus 373 ~dg~I~iWd~~~~---~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~---~~~-~~~~~~~~i~~i~~ 444 (701)
.|+.|-||.+..+ +|...++ |...|..+.|+| ...+|++++.|++|++|+-... .++ .+.+|...|.+++|
T Consensus 125 RDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHP-t~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F 203 (312)
T KOG0645|consen 125 RDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHP-TEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAF 203 (312)
T ss_pred CCCeEEEEEecCCCcEEEEeeeccccccccEEEEcC-CcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEe
Confidence 9999999998754 5666666 999999999999 8999999999999999987632 334 45567779999999
Q ss_pred eeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCcc-----
Q 005352 445 RPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV----- 519 (701)
Q Consensus 445 sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~----- 519 (701)
+|.|..|++++.|++++||-.... ....|...+..+.|. ...|++++.|+.|++|.....
T Consensus 204 ~~~G~rl~s~sdD~tv~Iw~~~~~------------~~~~~sr~~Y~v~W~---~~~IaS~ggD~~i~lf~~s~~~d~p~ 268 (312)
T KOG0645|consen 204 DNIGSRLVSCSDDGTVSIWRLYTD------------LSGMHSRALYDVPWD---NGVIASGGGDDAIRLFKESDSPDEPS 268 (312)
T ss_pred cCCCceEEEecCCcceEeeeeccC------------cchhcccceEeeeec---ccceEeccCCCEEEEEEecCCCCCch
Confidence 999999999999999999986532 123344678888886 478999999999999975421
Q ss_pred -ceee-ecccCCCCeEEEEEecC-CCEEEEEeCCCcEEEEeCC
Q 005352 520 -IGKY-KGLRRSGNQLSACFTSD-GKHIVSAGEDSNVYMWNCI 559 (701)
Q Consensus 520 -~~~~-~~~~~~~~v~~l~~s~d-g~~l~sgs~Dg~I~iWd~~ 559 (701)
.... ....|...|+++.|.|. ..+|++|+.||.|++|.+.
T Consensus 269 ~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 269 WNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred HHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 1111 22348889999999995 6899999999999999874
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.8e-30 Score=278.74 Aligned_cols=280 Identities=20% Similarity=0.335 Sum_probs=233.3
Q ss_pred eeeecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeee
Q 005352 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLT 286 (701)
Q Consensus 207 ~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~ 286 (701)
..+++++..++.++.++.+++|+...... ...+++.+|...|.+++|+|+|++|++|+.|++|+|||+....
T Consensus 165 ~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-----~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~--- 236 (456)
T KOG0266|consen 165 VDFSPDGRALAAASSDGLIRIWKLEGIKS-----NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDG--- 236 (456)
T ss_pred EEEcCCCCeEEEccCCCcEEEeecccccc-----hhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCC---
Confidence 56788888988899999999998733221 1224457899999999999999999999999999999994432
Q ss_pred eecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC
Q 005352 287 EVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN 366 (701)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~ 366 (701)
..++++.+|...|++++|+|++
T Consensus 237 ----------------------------------------------------------~~~~~l~gH~~~v~~~~f~p~g 258 (456)
T KOG0266|consen 237 ----------------------------------------------------------RNLKTLKGHSTYVTSVAFSPDG 258 (456)
T ss_pred ----------------------------------------------------------eEEEEecCCCCceEEEEecCCC
Confidence 3467788999999999999999
Q ss_pred -eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCc--EE-EEecCCC--cE
Q 005352 367 -YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH--VV-DWVDIRQ--IV 439 (701)
Q Consensus 367 -~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~--~~-~~~~~~~--~i 439 (701)
++++|+.|++|+|||+++++++..+. |.+.|++++|++ ++++|++++.|+.|+|||+.++. ++ ....+.. ++
T Consensus 259 ~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~-d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 337 (456)
T KOG0266|consen 259 NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSP-DGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPV 337 (456)
T ss_pred CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECC-CCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCce
Confidence 99999999999999999999999998 999999999999 99999999999999999999998 33 3333333 58
Q ss_pred EEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCcc
Q 005352 440 TAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV 519 (701)
Q Consensus 440 ~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~ 519 (701)
+.++|+|++.++++++.|+.+++||+............ ... ...+.+....+ .+.++++|+.|+.|++||..+.
T Consensus 338 ~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~----~~~-~~~~~~~~~~~-~~~~i~sg~~d~~v~~~~~~s~ 411 (456)
T KOG0266|consen 338 TSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGH----SNL-VRCIFSPTLST-GGKLIYSGSEDGSVYVWDSSSG 411 (456)
T ss_pred eEEEECCCCcEEEEecCCCeEEEEEccCCcceeeeccc----CCc-ceeEecccccC-CCCeEEEEeCCceEEEEeCCcc
Confidence 99999999999999999999999999987654322111 111 12344444455 7899999999999999999876
Q ss_pred ceeeecccC-CCCeEEEEEecCCCEEEEEe--CCCcEEEEeCC
Q 005352 520 IGKYKGLRR-SGNQLSACFTSDGKHIVSAG--EDSNVYMWNCI 559 (701)
Q Consensus 520 ~~~~~~~~~-~~~v~~l~~s~dg~~l~sgs--~Dg~I~iWd~~ 559 (701)
........| ...+..++++|...++++++ .|+.|++|..+
T Consensus 412 ~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 412 GILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred chhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 666666667 88999999999999999998 78999999864
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=251.75 Aligned_cols=248 Identities=19% Similarity=0.344 Sum_probs=219.7
Q ss_pred ceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEE
Q 005352 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (701)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (701)
+.+.+|..+|+.+.|+|+-..++++++|++|++||..+++.
T Consensus 102 ~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~--------------------------------------- 142 (406)
T KOG0295|consen 102 QKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGEL--------------------------------------- 142 (406)
T ss_pred hhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhh---------------------------------------
Confidence 45678999999999999999999999999999999998853
Q ss_pred eeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCC-Ceeeeee-cCCCCeEEE
Q 005352 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGN-DHCLRVF-PHSNYVTCV 400 (701)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~-~~~~~~~-~h~~~V~~l 400 (701)
...++||.+.|.+|+|+..| +|++++.|-.+++||..+ .+|++.. .|...|.++
T Consensus 143 -----------------------e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V 199 (406)
T KOG0295|consen 143 -----------------------ERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSV 199 (406)
T ss_pred -----------------------hhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeE
Confidence 34568999999999999999 999999999999999987 4555544 489999999
Q ss_pred EEeeCCCCEEEEEEcCCcEEEEeCCCCcEE-EEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEee
Q 005352 401 HFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVH 479 (701)
Q Consensus 401 ~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~-~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~ 479 (701)
+|-| .++++++++.|.+|+.|++.++-++ .+.+|...|..+..+.||..+++++.|.++++|-+.+.+....
T Consensus 200 ~f~P-~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~------ 272 (406)
T KOG0295|consen 200 FFLP-LGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAE------ 272 (406)
T ss_pred EEEe-cCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhh------
Confidence 9999 8899999999999999999999888 4567889999999999999999999999999999998754322
Q ss_pred cccCCCCCCeeEEEEecC--------------CCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEE
Q 005352 480 SKKKAPCKRITGFQFLPQ--------------DSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIV 545 (701)
Q Consensus 480 ~~~~~~~~~i~~l~~~p~--------------~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~ 545 (701)
...|..+|.+++|.|. .++++.+++.|++|++||+.+....+...+|...|..++|+|.|+||+
T Consensus 273 --lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ 350 (406)
T KOG0295|consen 273 --LREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYIL 350 (406)
T ss_pred --hhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEE
Confidence 2345566778887652 346899999999999999999999999999999999999999999999
Q ss_pred EEeCCCcEEEEeCCCCC
Q 005352 546 SAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 546 sgs~Dg~I~iWd~~~~~ 562 (701)
++.+|+++++||+++..
T Consensus 351 ScaDDktlrvwdl~~~~ 367 (406)
T KOG0295|consen 351 SCADDKTLRVWDLKNLQ 367 (406)
T ss_pred EEecCCcEEEEEeccce
Confidence 99999999999999886
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-30 Score=274.27 Aligned_cols=271 Identities=23% Similarity=0.332 Sum_probs=221.6
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCC
Q 005352 250 DGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSE 329 (701)
Q Consensus 250 ~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (701)
...++|..|++|+..||.|-.|..|++|.+...+ +..++....-. +... ...+
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~k-l~~lk~~~~l~-------~~d~-------------------~sad 430 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKK-LKKLKDASDLS-------NIDT-------------------ESAD 430 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchhh-hccccchhhhc-------cccc-------------------cccc
Confidence 4569999999999999999999999999987542 11111100000 0000 0000
Q ss_pred ccEEEcCCccccc-cCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCC
Q 005352 330 SACVVFPPKVFRI-LEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVD 406 (701)
Q Consensus 330 ~~~~~~~~~~~~~-~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~ 406 (701)
. .....+. ......++.||.++|..+.|+|+. +|+++|.|++||+|.+.+..++..++ |..+|.+++|+| .
T Consensus 431 ~-----~~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P-~ 504 (707)
T KOG0263|consen 431 V-----DVDMLDDDSSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAP-R 504 (707)
T ss_pred h-----hhhhccccCCceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecC-C
Confidence 0 0000111 113345689999999999999999 99999999999999999999998887 999999999999 9
Q ss_pred CCEEEEEEcCCcEEEEeCCCCcEEE-EecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCC
Q 005352 407 DNYFISGSIDGKVRIWAVLSCHVVD-WVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAP 485 (701)
Q Consensus 407 ~~~l~sgs~dg~v~iwd~~~~~~~~-~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~ 485 (701)
+-+|||++.|++.++|.....+... +.+|-..|.|+.|+|+..++++|+.|.+|++||+.++.... ...+|
T Consensus 505 GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VR--------iF~GH 576 (707)
T KOG0263|consen 505 GYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVR--------IFTGH 576 (707)
T ss_pred ceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEE--------EecCC
Confidence 9999999999999999998776664 55788999999999999999999999999999999987532 13558
Q ss_pred CCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 486 CKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 486 ~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
..+|++++|+| .+.+|++|+.|+.|.+||+..........+|.+.|.++.|+.+|..||+|+.|.+|++||+....
T Consensus 577 ~~~V~al~~Sp-~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 577 KGPVTALAFSP-CGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred CCceEEEEEcC-CCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhc
Confidence 89999999999 89999999999999999999877777777789999999999999999999999999999987655
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.7e-30 Score=232.10 Aligned_cols=243 Identities=27% Similarity=0.516 Sum_probs=212.9
Q ss_pred ceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEE
Q 005352 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (701)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (701)
..+..|+++|.++.|+-||+|.+|||.|.+|++|+...+.
T Consensus 11 ~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~---------------------------------------- 50 (307)
T KOG0316|consen 11 SILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGA---------------------------------------- 50 (307)
T ss_pred eeecccccceEEEEEccCCCEEEEcCCCceEEeecccccc----------------------------------------
Confidence 4577899999999999999999999999999999987763
Q ss_pred eeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEE
Q 005352 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVH 401 (701)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~ 401 (701)
.++++.+|..+|.+++.+.++ .|++|+.|+.|.+||+.+++.++.|. |...|+.++
T Consensus 51 ----------------------liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~ 108 (307)
T KOG0316|consen 51 ----------------------LIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVR 108 (307)
T ss_pred ----------------------eeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEE
Confidence 456778999999999999988 99999999999999999999999997 999999999
Q ss_pred EeeCCCCEEEEEEcCCcEEEEeCCCCc--EEEEe-cCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEe
Q 005352 402 FNPVDDNYFISGSIDGKVRIWAVLSCH--VVDWV-DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICV 478 (701)
Q Consensus 402 f~p~~~~~l~sgs~dg~v~iwd~~~~~--~~~~~-~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~ 478 (701)
|+. +...+++|+.|.++++||.++.. +++.+ .....|.+|... +..|++|+.||+++.||++.+.+..
T Consensus 109 fNe-esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~s------ 179 (307)
T KOG0316|consen 109 FNE-ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSS------ 179 (307)
T ss_pred ecC-cceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecceeeh------
Confidence 998 89999999999999999998764 34433 345678888775 5689999999999999999987642
Q ss_pred ecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCc--cceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 005352 479 HSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN--VIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMW 556 (701)
Q Consensus 479 ~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~--~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iW 556 (701)
.....+|+++.|++ +++..++++.|+++++.|-.+ ....++++.....-..++++....++++|++||.|++|
T Consensus 180 ----Dy~g~pit~vs~s~-d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~w 254 (307)
T KOG0316|consen 180 ----DYFGHPITSVSFSK-DGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFW 254 (307)
T ss_pred ----hhcCCcceeEEecC-CCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEE
Confidence 23447899999999 899999999999999999764 45667777666777788899999999999999999999
Q ss_pred eCCCCC
Q 005352 557 NCIGHE 562 (701)
Q Consensus 557 d~~~~~ 562 (701)
|+.+..
T Consensus 255 dLvd~~ 260 (307)
T KOG0316|consen 255 DLVDET 260 (307)
T ss_pred Eeccce
Confidence 998876
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-31 Score=257.71 Aligned_cols=283 Identities=16% Similarity=0.281 Sum_probs=232.0
Q ss_pred CCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecC
Q 005352 249 HDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTS 328 (701)
Q Consensus 249 H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (701)
-+-+|..|.|.|+|+.|++|+..|.+.+|+...-.
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fn--------------------------------------------- 129 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFN--------------------------------------------- 129 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCceee---------------------------------------------
Confidence 34589999999999999999999999999963211
Q ss_pred CccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCC
Q 005352 329 ESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVD 406 (701)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~ 406 (701)
.-..++.|...|+++.|++++ ++++|+.+|.|++|+..-........ |...|++++|+| +
T Consensus 130 -----------------FEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSp-n 191 (464)
T KOG0284|consen 130 -----------------FETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSP-N 191 (464)
T ss_pred -----------------HHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCC-C
Confidence 011246799999999999999 99999999999999986554443344 558999999999 8
Q ss_pred CCEEEEEEcCCcEEEEeCCCCcEE-EEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCC
Q 005352 407 DNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAP 485 (701)
Q Consensus 407 ~~~l~sgs~dg~v~iwd~~~~~~~-~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~ 485 (701)
+..|++++.||+|+|||....+.- .+.+|.-.|.++.|+|....+++|+.|..|++||.+++.+... ...|
T Consensus 192 DskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~t--------lh~H 263 (464)
T KOG0284|consen 192 DSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLAT--------LHGH 263 (464)
T ss_pred CceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhh--------hhhc
Confidence 899999999999999999876543 4567888999999999999999999999999999999887543 3446
Q ss_pred CCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecC-CCEEEEEeCCCcEEEEeCCCCCCC
Q 005352 486 CKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSD-GKHIVSAGEDSNVYMWNCIGHEEP 564 (701)
Q Consensus 486 ~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~d-g~~l~sgs~Dg~I~iWd~~~~~~~ 564 (701)
...|..+.|+| ++++|++++.|..++++|++.....+....|...|+++.|+|- ..+|.+|+.||.|..|.+...++
T Consensus 264 KntVl~~~f~~-n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p- 341 (464)
T KOG0284|consen 264 KNTVLAVKFNP-NGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEP- 341 (464)
T ss_pred cceEEEEEEcC-CCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEecccccc-
Confidence 68899999999 6799999999999999999977777777779999999999994 56888999999999999874331
Q ss_pred CccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCCcccCCCCcc
Q 005352 565 AHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEK 642 (701)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~~ 642 (701)
+..++. .+...+..++|.| +|+.|.+++.|+++++|....
T Consensus 342 -------~~~i~~---------------------------AHd~~iwsl~~hP----lGhil~tgsnd~t~rfw~r~r 381 (464)
T KOG0284|consen 342 -------LGEIPP---------------------------AHDGEIWSLAYHP----LGHILATGSNDRTVRFWTRNR 381 (464)
T ss_pred -------ccCCCc---------------------------ccccceeeeeccc----cceeEeecCCCcceeeeccCC
Confidence 111111 1234456677777 488888889999999987543
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-29 Score=271.31 Aligned_cols=248 Identities=30% Similarity=0.514 Sum_probs=207.8
Q ss_pred CCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecC
Q 005352 249 HDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTS 328 (701)
Q Consensus 249 H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (701)
|...|.++.|+++|++|++++.|+.+++|+......
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-------------------------------------------- 193 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-------------------------------------------- 193 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc--------------------------------------------
Confidence 478999999999999999999999999999855431
Q ss_pred CccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEEC-CCCeeeeeec-CCCCeEEEEEeeC
Q 005352 329 ESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRV-GNDHCLRVFP-HSNYVTCVHFNPV 405 (701)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~-~~~~~~~~~~-h~~~V~~l~f~p~ 405 (701)
...+.+.+|...|.+++|+|++ ++++++.|++|+|||+ ..+.+++++. |...|++++|+|
T Consensus 194 ----------------~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p- 256 (456)
T KOG0266|consen 194 ----------------NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSP- 256 (456)
T ss_pred ----------------hhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecC-
Confidence 1233447899999999999999 9999999999999999 5558888886 999999999999
Q ss_pred CCCEEEEEEcCCcEEEEeCCCCcEE-EEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCC
Q 005352 406 DDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKA 484 (701)
Q Consensus 406 ~~~~l~sgs~dg~v~iwd~~~~~~~-~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~ 484 (701)
.++++++|+.|++|+|||+++++++ .+..|.+.|++++|+++++.|++++.|+.|++||+.++.... .........
T Consensus 257 ~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~---~~~~~~~~~ 333 (456)
T KOG0266|consen 257 DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLC---LKLLSGAEN 333 (456)
T ss_pred CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceee---eecccCCCC
Confidence 7799999999999999999998887 556788999999999999999999999999999999987430 011111222
Q ss_pred CCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCC---CeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 005352 485 PCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSG---NQLSACFTSDGKHIVSAGEDSNVYMWNCIGH 561 (701)
Q Consensus 485 ~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~---~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~ 561 (701)
.. .++.++|+| ++.++++++.|+.+++||+...........|.. .+.+...++.+.++++|+.|+.|++|++.++
T Consensus 334 ~~-~~~~~~fsp-~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~ 411 (456)
T KOG0266|consen 334 SA-PVTSVQFSP-NGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSG 411 (456)
T ss_pred CC-ceeEEEECC-CCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCcc
Confidence 22 799999999 899999999999999999986554444333444 4445556789999999999999999999986
Q ss_pred C
Q 005352 562 E 562 (701)
Q Consensus 562 ~ 562 (701)
.
T Consensus 412 ~ 412 (456)
T KOG0266|consen 412 G 412 (456)
T ss_pred c
Confidence 5
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-30 Score=246.77 Aligned_cols=280 Identities=19% Similarity=0.318 Sum_probs=233.5
Q ss_pred cccCcce--eeecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEE
Q 005352 201 DKQGEGE--RVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQ 278 (701)
Q Consensus 201 ~~~~~~~--~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd 278 (701)
.|.+-+. ++.+.++.+++|+.|++++|||+...... ..+.||...|..+++|+-..||++++.|+.|+.||
T Consensus 149 gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lk-------ltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwD 221 (460)
T KOG0285|consen 149 GHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLK-------LTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWD 221 (460)
T ss_pred hccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEE-------EeecchhheeeeeeecccCceEEEecCCCeeEEEe
Confidence 3444443 45566788999999999999987654332 35788999999999999999999999999999999
Q ss_pred eecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeE
Q 005352 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEIL 358 (701)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~ 358 (701)
++.++ .++.+.||-..|.
T Consensus 222 Le~nk--------------------------------------------------------------vIR~YhGHlS~V~ 239 (460)
T KOG0285|consen 222 LEYNK--------------------------------------------------------------VIRHYHGHLSGVY 239 (460)
T ss_pred chhhh--------------------------------------------------------------hHHHhccccceeE
Confidence 98874 4556789999999
Q ss_pred EEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEE-EEecC
Q 005352 359 DLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDI 435 (701)
Q Consensus 359 ~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~-~~~~~ 435 (701)
|++.+|.- .|++|+.|.+++|||+++...+..+. |..+|..+.+.| .+..+++|+.|++|++||++.++.. ....|
T Consensus 240 ~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~-~dpqvit~S~D~tvrlWDl~agkt~~tlt~h 318 (460)
T KOG0285|consen 240 CLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQP-TDPQVITGSHDSTVRLWDLRAGKTMITLTHH 318 (460)
T ss_pred EEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeec-CCCceEEecCCceEEEeeeccCceeEeeecc
Confidence 99999987 99999999999999999999999987 999999999999 6678999999999999999998766 66678
Q ss_pred CCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEe
Q 005352 436 RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQ 515 (701)
Q Consensus 436 ~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd 515 (701)
...+.+++.+|....+++++.| .++-|++..+.+... ...|...|+.+..+. ..++++|+.+|.+.+||
T Consensus 319 kksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~n--------lsgh~~iintl~~ns--D~v~~~G~dng~~~fwd 387 (460)
T KOG0285|consen 319 KKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQN--------LSGHNAIINTLSVNS--DGVLVSGGDNGSIMFWD 387 (460)
T ss_pred cceeeEEecCCchhhhhccCCc-cceeccCCccchhhc--------cccccceeeeeeecc--CceEEEcCCceEEEEEe
Confidence 8999999999999888888875 589999988765432 344556788888876 57899999999999999
Q ss_pred CCccceeeec--------ccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 005352 516 GPNVIGKYKG--------LRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGH 561 (701)
Q Consensus 516 ~~~~~~~~~~--------~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~ 561 (701)
.+....-..+ ......|.+.+|...|..|+||..|.+|++|.-+..
T Consensus 388 wksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe~ 441 (460)
T KOG0285|consen 388 WKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDEH 441 (460)
T ss_pred cCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEecccc
Confidence 8753322111 124567899999999999999999999999985543
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-29 Score=256.40 Aligned_cols=385 Identities=18% Similarity=0.225 Sum_probs=279.5
Q ss_pred eeeecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeee
Q 005352 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLT 286 (701)
Q Consensus 207 ~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~ 286 (701)
.++++.+..++++-.+|.|.||++.+... .+.+.-..-+|.+.+|-+..+++++|+.|..|+||+..+.++
T Consensus 19 Vd~HPtePw~la~LynG~V~IWnyetqtm-------VksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ek-- 89 (794)
T KOG0276|consen 19 VDFHPTEPWILAALYNGDVQIWNYETQTM-------VKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEK-- 89 (794)
T ss_pred eecCCCCceEEEeeecCeeEEEeccccee-------eeeeeecccchhhheeeeccceEEEecCCceEEEEeccccee--
Confidence 34566677888899999999999875432 234555788999999999999999999999999999998853
Q ss_pred eecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC
Q 005352 287 EVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN 366 (701)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~ 366 (701)
++.|..|.+-|.+|+.+|..
T Consensus 90 ------------------------------------------------------------V~~FeAH~DyIR~iavHPt~ 109 (794)
T KOG0276|consen 90 ------------------------------------------------------------VKTFEAHSDYIRSIAVHPTL 109 (794)
T ss_pred ------------------------------------------------------------eEEeeccccceeeeeecCCC
Confidence 56678899999999999999
Q ss_pred -eEEEEECCCcEEEEECCCC-eeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEE-EEecCCCcEEEE
Q 005352 367 -YLLSASIDKTVRLWRVGND-HCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAV 442 (701)
Q Consensus 367 -~l~s~s~dg~I~iWd~~~~-~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~-~~~~~~~~i~~i 442 (701)
+++|+|.|-+|++||.+.. .|.++|. |..+|.+++|+|.|.+.|++++.|++|+||.+.+..+. .+.+|...|+++
T Consensus 110 P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~V 189 (794)
T KOG0276|consen 110 PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCV 189 (794)
T ss_pred CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceE
Confidence 9999999999999999865 6778886 99999999999999999999999999999999877655 666899999999
Q ss_pred EEeeCC--CeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccc
Q 005352 443 CYRPDG--QGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVI 520 (701)
Q Consensus 443 ~~sp~g--~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~ 520 (701)
+|-+-| .+|++|+.|..+++||..+..+... ...|...|..+.|+| .-.++++|+.||+++||+..+..
T Consensus 190 dyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~T--------LeGHt~Nvs~v~fhp-~lpiiisgsEDGTvriWhs~Ty~ 260 (794)
T KOG0276|consen 190 DYYTGGDKPYLISGADDLTIKVWDYQTKSCVQT--------LEGHTNNVSFVFFHP-ELPIIISGSEDGTVRIWNSKTYK 260 (794)
T ss_pred EeccCCCcceEEecCCCceEEEeecchHHHHHH--------hhcccccceEEEecC-CCcEEEEecCCccEEEecCccee
Confidence 998854 6999999999999999998765432 456778899999999 78899999999999999988766
Q ss_pred eeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCCCCccc--cccccccccccCCceEEecCCCCCCC-CCC
Q 005352 521 GKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQ--AKTIRSLERFTTNASIAIPWCGLKCG-NAE 597 (701)
Q Consensus 521 ~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~--~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~ 597 (701)
..-...-....+.+++-.+.++.++.|...|.|.+ ++...++..... .+.+.+. .+.+.++........ ...
T Consensus 261 lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v-~lgreeP~vsMd~~gKIiwa~----~~ei~~~~~ks~~~~~ev~ 335 (794)
T KOG0276|consen 261 LEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV-KLGREEPAVSMDSNGKIIWAV----HSEIQAVNLKSVGAQKEVT 335 (794)
T ss_pred hhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE-EccCCCCceeecCCccEEEEc----CceeeeeeceeccCccccc
Confidence 55555446788999999998888898887776544 444444221111 1111111 111111111111000 001
Q ss_pred CC--Ccccc----CCCCCCCccccCCCccccCccccccCCCCcccCCCCccCCCCccccccccchhhhhhhhhccccccc
Q 005352 598 KE--PQLHV----SDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLSSASALHKSQYKFLKSSCLCTT 671 (701)
Q Consensus 598 ~~--~~~~~----~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (701)
.+ ..+.. ...-.+..|+.+| +.+|++...||...++..-... .+. .+..+...
T Consensus 336 DgErL~LsvKeLgs~eiyPq~L~hsP-----NGrfV~VcgdGEyiIyTala~R-nK~---------------fG~~~eFv 394 (794)
T KOG0276|consen 336 DGERLPLSVKELGSVEIYPQTLAHSP-----NGRFVVVCGDGEYIIYTALALR-NKA---------------FGSGLEFV 394 (794)
T ss_pred CCccccchhhhccccccchHHhccCC-----CCcEEEEecCccEEEEEeeehh-hcc---------------cccceeEE
Confidence 01 11111 1122244566677 4567777788887665521111 011 12344445
Q ss_pred ccCCCccEEEEecCCCeEeEEeecC
Q 005352 672 SSHAWGLVIVTAGWDGRIRSFLNYG 696 (701)
Q Consensus 672 ~~~~~g~~ivTgg~DG~Irvw~~~g 696 (701)
+.++ ....+.--.+|.|++|+||-
T Consensus 395 w~~d-sne~avRes~~~vki~knfk 418 (794)
T KOG0276|consen 395 WAAD-SNEFAVRESNGNVKIFKNFK 418 (794)
T ss_pred EcCC-CCeEEEEecCCceEEEecce
Confidence 5555 66677777788888888874
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-28 Score=251.43 Aligned_cols=284 Identities=26% Similarity=0.485 Sum_probs=230.5
Q ss_pred ceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEE
Q 005352 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (701)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (701)
+.+++|.++|++++|+|++++|++++.||.|++|++.+++
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~---------------------------------------- 42 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE---------------------------------------- 42 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCC----------------------------------------
Confidence 3567899999999999999999999999999999987653
Q ss_pred eeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEE
Q 005352 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVH 401 (701)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~ 401 (701)
....+..|...+..+.|++++ ++++++.++.|++||+.+++.+..+. |...+.++.
T Consensus 43 ----------------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~ 100 (289)
T cd00200 43 ----------------------LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVA 100 (289)
T ss_pred ----------------------cEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEE
Confidence 233456788889999999998 99999999999999999887777665 777999999
Q ss_pred EeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEe-cCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeec
Q 005352 402 FNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV-DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHS 480 (701)
Q Consensus 402 f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~-~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~ 480 (701)
|+| ++.++++++.++.|++||+.+++..... .+...+.+++|+|++.++++++.++.+++||++..+.....
T Consensus 101 ~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~------ 173 (289)
T cd00200 101 FSP-DGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATL------ 173 (289)
T ss_pred EcC-CCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeE------
Confidence 999 7888888888999999999977766444 47788999999999999988888999999999866543221
Q ss_pred ccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 005352 481 KKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIG 560 (701)
Q Consensus 481 ~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~ 560 (701)
..+...+.++.|+| ++..+++++.++.|++||............+...+.+++|+|++.++++++.||.|++|++.+
T Consensus 174 --~~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~ 250 (289)
T cd00200 174 --TGHTGEVNSVAFSP-DGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRT 250 (289)
T ss_pred --ecCccccceEEECC-CcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCC
Confidence 13446799999999 677888888899999999986554444435778999999999999999998899999999886
Q ss_pred CCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCCcccCCC
Q 005352 561 HEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWP 639 (701)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~ 639 (701)
++... .+. .....+..++++|+ +..+++++.|+.+++|+
T Consensus 251 ~~~~~--------~~~----------------------------~~~~~i~~~~~~~~----~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 251 GECVQ--------TLS----------------------------GHTNSVTSLAWSPD----GKRLASGSADGTIRIWD 289 (289)
T ss_pred ceeEE--------Ecc----------------------------ccCCcEEEEEECCC----CCEEEEecCCCeEEecC
Confidence 54210 000 11223555677775 56788889999999995
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.8e-29 Score=289.78 Aligned_cols=326 Identities=16% Similarity=0.246 Sum_probs=240.3
Q ss_pred cceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEe
Q 005352 222 VQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFT 301 (701)
Q Consensus 222 d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~ 301 (701)
+|.+++|+...... ........+.+|.+.|.+++|+|+|++||||+.|+.|+||++....... ..
T Consensus 457 ~gl~~~~~~~~~~~--~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~-~~------------ 521 (793)
T PLN00181 457 EGLCKYLSFSKLRV--KADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDG-RD------------ 521 (793)
T ss_pred hhhhhhhcccceEE--EEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccc-cc------------
Confidence 56677777653322 2222334567799999999999999999999999999999975421000 00
Q ss_pred eccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecC-C-eEEEEECCCcEEE
Q 005352 302 VNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN-N-YLLSASIDKTVRL 379 (701)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~-~-~l~s~s~dg~I~i 379 (701)
...+...+. +...|.+++|++. + +|++++.||+|++
T Consensus 522 -----------------------------------------~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~l 559 (793)
T PLN00181 522 -----------------------------------------IHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQV 559 (793)
T ss_pred -----------------------------------------cccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeEEE
Confidence 001122223 3457899999885 4 9999999999999
Q ss_pred EECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEe-eCCCeEEEEecC
Q 005352 380 WRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYR-PDGQGGIVGSMM 457 (701)
Q Consensus 380 Wd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~s-p~g~~l~~gs~d 457 (701)
||+.+++.+..+. |...|++++|+|.++.+|++|+.|++|++||++++..+....+...+.++.|. +++..|++|+.|
T Consensus 560 Wd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~d 639 (793)
T PLN00181 560 WDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSAD 639 (793)
T ss_pred EECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCC
Confidence 9999998888875 99999999999757889999999999999999998888766667789999995 579999999999
Q ss_pred CcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCcc------ceeeecccCCCC
Q 005352 458 GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV------IGKYKGLRRSGN 531 (701)
Q Consensus 458 g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~------~~~~~~~~~~~~ 531 (701)
|.|++||++...... .....|...|.++.|. ++.++++++.|+.|++||+... ........|...
T Consensus 640 g~I~iwD~~~~~~~~-------~~~~~h~~~V~~v~f~--~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~ 710 (793)
T PLN00181 640 HKVYYYDLRNPKLPL-------CTMIGHSKTVSYVRFV--DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNV 710 (793)
T ss_pred CeEEEEECCCCCccc-------eEecCCCCCEEEEEEe--CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCC
Confidence 999999998754211 0123466789999996 4678999999999999998632 122233347888
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCC
Q 005352 532 QLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPE 611 (701)
Q Consensus 532 v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (701)
+..++|+|++.+|++|+.|+.|++|+........ ++...... .+.+. ........+.
T Consensus 711 i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~--------s~~~~~~~-----~~~~~----------~~~~~~~~V~ 767 (793)
T PLN00181 711 KNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVL--------SYKFKTID-----PVSGL----------EVDDASQFIS 767 (793)
T ss_pred eeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceE--------EEecccCC-----ccccc----------ccCCCCcEEE
Confidence 9999999999999999999999999976553110 00000000 00000 0001123466
Q ss_pred ccccCCCccccCccccccCCCCcccCCCC
Q 005352 612 NLAFAPARFSLGQEYVFESFPKGCATWPE 640 (701)
Q Consensus 612 ~l~~sp~~~~~~~~~~~~s~d~~~~~W~~ 640 (701)
.++|+|+ +..+++++.+|.+++|+.
T Consensus 768 ~v~ws~~----~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 768 SVCWRGQ----SSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEEEcCC----CCeEEEecCCCcEEEEec
Confidence 7888886 678899999999999973
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-28 Score=228.56 Aligned_cols=292 Identities=16% Similarity=0.246 Sum_probs=225.5
Q ss_pred CeEEEcCCccCeEEEEEecC-C-eEEEEECCCcEEEEECCC---Ceeeeeec--CCCCeEEEEEeeCCCCEEEEEEcCCc
Q 005352 346 PLHEFHGHSGEILDLSWSKN-N-YLLSASIDKTVRLWRVGN---DHCLRVFP--HSNYVTCVHFNPVDDNYFISGSIDGK 418 (701)
Q Consensus 346 ~~~~~~~h~~~I~~l~~s~~-~-~l~s~s~dg~I~iWd~~~---~~~~~~~~--h~~~V~~l~f~p~~~~~l~sgs~dg~ 418 (701)
.++.+.+|++.+..++|+|- | .|++++.|+.|++|+... -.|...+. |+..|+.++|+| .+++|++++.|.+
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp-~g~~La~aSFD~t 84 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSP-HGRYLASASFDAT 84 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecC-CCcEEEEeeccce
Confidence 45678899999999999998 6 899999999999999985 34554453 999999999999 9999999999999
Q ss_pred EEEEeCCCCc--EE-EEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEe
Q 005352 419 VRIWAVLSCH--VV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFL 495 (701)
Q Consensus 419 v~iwd~~~~~--~~-~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~ 495 (701)
+.||.-..+. ++ .+.+|...|.+++|+++|++||+++.|..|-||.+..... +........|...|..+.|+
T Consensus 85 ~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddE-----fec~aVL~~HtqDVK~V~WH 159 (312)
T KOG0645|consen 85 VVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDE-----FECIAVLQEHTQDVKHVIWH 159 (312)
T ss_pred EEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCc-----EEEEeeeccccccccEEEEc
Confidence 9999776553 34 5668999999999999999999999999999999984332 23344456677899999999
Q ss_pred cCCCCEEEEEECCCcEEEEeCC---ccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCCCCccccccc
Q 005352 496 PQDSSKVMVSCADSQVRILQGP---NVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTI 572 (701)
Q Consensus 496 p~~~~~l~~~s~dg~I~iwd~~---~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~ 572 (701)
| ...+|++++.|++|++|+-. ..........|...|.+++|++.|..|++++.|++|+||...+.
T Consensus 160 P-t~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~----------- 227 (312)
T KOG0645|consen 160 P-TEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD----------- 227 (312)
T ss_pred C-CcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC-----------
Confidence 9 78999999999999999754 33445555558889999999999999999999999999986532
Q ss_pred cccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCCcccCCCCccCCCCcccccc
Q 005352 573 RSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLSSA 652 (701)
Q Consensus 573 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~~ 652 (701)
+...++.....++|+ ...+++++.|..++++.....+.-..+
T Consensus 228 --~~~~~sr~~Y~v~W~---------------------------------~~~IaS~ggD~~i~lf~~s~~~d~p~~--- 269 (312)
T KOG0645|consen 228 --LSGMHSRALYDVPWD---------------------------------NGVIASGGGDDAIRLFKESDSPDEPSW--- 269 (312)
T ss_pred --cchhcccceEeeeec---------------------------------ccceEeccCCCEEEEEEecCCCCCchH---
Confidence 233344445555555 123445677888887776644321111
Q ss_pred ccchhhhhhhhhcccccccccCCCccEEEEecCCCeEeEEee
Q 005352 653 SALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFLN 694 (701)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~g~~ivTgg~DG~Irvw~~ 694 (701)
.......+.|...|+++...+.-...|++||.||.|++|..
T Consensus 270 -~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l 310 (312)
T KOG0645|consen 270 -NLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWEL 310 (312)
T ss_pred -HHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEe
Confidence 01111223345577777777744678999999999999975
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.2e-30 Score=250.39 Aligned_cols=288 Identities=17% Similarity=0.215 Sum_probs=234.6
Q ss_pred cccCcc--eeeecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEE
Q 005352 201 DKQGEG--ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQ 278 (701)
Q Consensus 201 ~~~~~~--~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd 278 (701)
+|..|+ ..++.++.+++++++|.+..||+...... +....++.+|..+|..+.||||.+||++|+.|..+++||
T Consensus 222 ~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~----~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwD 297 (519)
T KOG0293|consen 222 DHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVH----FKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWD 297 (519)
T ss_pred hCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcc----eeeeeeeecccCceEEEEECCCCCeEEecCchHheeecc
Confidence 344454 46788999999999999999999754332 223356889999999999999999999999999999999
Q ss_pred eecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeE
Q 005352 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEIL 358 (701)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~ 358 (701)
+.++.....+. .+|...+.
T Consensus 298 v~tgd~~~~y~-------------------------------------------------------------~~~~~S~~ 316 (519)
T KOG0293|consen 298 VDTGDLRHLYP-------------------------------------------------------------SGLGFSVS 316 (519)
T ss_pred CCcchhhhhcc-------------------------------------------------------------cCcCCCcc
Confidence 99987443321 23567899
Q ss_pred EEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec--CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecC
Q 005352 359 DLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDI 435 (701)
Q Consensus 359 ~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~ 435 (701)
+++|.|++ .+++|+.|++|..||+.... +.... ....|.+++..+ |++++++.+.|..|++|+..+.........
T Consensus 317 sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~dlait~-Dgk~vl~v~~d~~i~l~~~e~~~dr~lise 394 (519)
T KOG0293|consen 317 SCAWCPDGFRFVTGSPDRTIIMWDLDGNI-LGNWEGVRDPKVHDLAITY-DGKYVLLVTVDKKIRLYNREARVDRGLISE 394 (519)
T ss_pred eeEEccCCceeEecCCCCcEEEecCCcch-hhcccccccceeEEEEEcC-CCcEEEEEecccceeeechhhhhhhccccc
Confidence 99999999 99999999999999986553 22222 335699999999 999999999999999999988777767788
Q ss_pred CCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEe
Q 005352 436 RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQ 515 (701)
Q Consensus 436 ~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd 515 (701)
..+|++++++.+++++++.-.+..+++||+..+.+..... +++ ....+..-+|--.+..++++|+.|++|+||+
T Consensus 395 ~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~----Ghk--q~~fiIrSCFgg~~~~fiaSGSED~kvyIWh 468 (519)
T KOG0293|consen 395 EQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYF----GHK--QGHFIIRSCFGGGNDKFIASGSEDSKVYIWH 468 (519)
T ss_pred cCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhh----ccc--ccceEEEeccCCCCcceEEecCCCceEEEEE
Confidence 8999999999999999999999999999999765432211 111 1233455566555678999999999999999
Q ss_pred CCccceeeecccCCCCeEEEEEecCC-CEEEEEeCCCcEEEEeCCCC
Q 005352 516 GPNVIGKYKGLRRSGNQLSACFTSDG-KHIVSAGEDSNVYMWNCIGH 561 (701)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~l~~s~dg-~~l~sgs~Dg~I~iWd~~~~ 561 (701)
..+........+|...|++++|+|.. .++|+||.||+|+||.....
T Consensus 469 r~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 469 RISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred ccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 99888877777899999999999965 67899999999999987654
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6e-31 Score=262.51 Aligned_cols=295 Identities=20% Similarity=0.333 Sum_probs=243.0
Q ss_pred cCCCeEEEcCCccCeEEEEEec-CC-eEEEEECCCcEEEEECCC-Ceeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCc
Q 005352 343 LEKPLHEFHGHSGEILDLSWSK-NN-YLLSASIDKTVRLWRVGN-DHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGK 418 (701)
Q Consensus 343 ~~~~~~~~~~h~~~I~~l~~s~-~~-~l~s~s~dg~I~iWd~~~-~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~ 418 (701)
..+.++.+.||+..|+++.|.| .+ +|++++.|+.|+||++.. +.|+++|. |..+|..++|++ ++..|++++.|+.
T Consensus 203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~-~g~~fLS~sfD~~ 281 (503)
T KOG0282|consen 203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNN-CGTSFLSASFDRF 281 (503)
T ss_pred cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccc-cCCeeeeeeccee
Confidence 3467889999999999999999 55 999999999999999987 89999987 999999999999 9999999999999
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEEEeeCC-CeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecC
Q 005352 419 VRIWAVLSCHVVDWVDIRQIVTAVCYRPDG-QGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQ 497 (701)
Q Consensus 419 v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g-~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~ 497 (701)
|++||+.+|+++..+.....++++.|+|++ +.+++|+.|+.|+.||+++++...+ ...|...|..+.|.+
T Consensus 282 lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqe--------Yd~hLg~i~~i~F~~- 352 (503)
T KOG0282|consen 282 LKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQE--------YDRHLGAILDITFVD- 352 (503)
T ss_pred eeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHH--------HHhhhhheeeeEEcc-
Confidence 999999999999999999999999999998 8899999999999999999875432 345667899999999
Q ss_pred CCCEEEEEECCCcEEEEeCCcccee-eecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCCCCccccccccccc
Q 005352 498 DSSKVMVSCADSQVRILQGPNVIGK-YKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLE 576 (701)
Q Consensus 498 ~~~~l~~~s~dg~I~iwd~~~~~~~-~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~ 576 (701)
++..+++++.|+.++||+....... +....+.....++..+|++.+++.-+.|+.|.++.+...-... ..+....+
T Consensus 353 ~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~n--kkK~feGh- 429 (503)
T KOG0282|consen 353 EGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLN--KKKRFEGH- 429 (503)
T ss_pred CCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccC--Hhhhhcce-
Confidence 7999999999999999998754332 2223345567789999999999999999999999965543111 00000000
Q ss_pred cccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCCcccCCCCccCCCCccccccccch
Q 005352 577 RFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLSSASALH 656 (701)
Q Consensus 577 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~~~~~~ 656 (701)
....-...+.|||+ +..++++..+|.+.+|+-.+-..+..+.+|
T Consensus 430 ----------------------------~vaGys~~v~fSpD----G~~l~SGdsdG~v~~wdwkt~kl~~~lkah---- 473 (503)
T KOG0282|consen 430 ----------------------------SVAGYSCQVDFSPD----GRTLCSGDSDGKVNFWDWKTTKLVSKLKAH---- 473 (503)
T ss_pred ----------------------------eccCceeeEEEcCC----CCeEEeecCCccEEEeechhhhhhhccccC----
Confidence 00112334678998 788899999999999999988888888777
Q ss_pred hhhhhhhhcccccccccCCCccEEEEecCCCeEeEEe
Q 005352 657 KSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFL 693 (701)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~g~~ivTgg~DG~Irvw~ 693 (701)
...|..+.+.+--...++|+||||.|++|.
T Consensus 474 -------~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 474 -------DQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred -------CcceEEEEecCCCcceeEecccCceeEecC
Confidence 456777766555567899999999999995
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-29 Score=244.85 Aligned_cols=285 Identities=18% Similarity=0.248 Sum_probs=237.5
Q ss_pred cccCcceeeecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCC---CEEEEEeCCCcEEEE
Q 005352 201 DKQGEGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDG---QYLASAGDDGVVRLW 277 (701)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg---~~Lasgs~Dg~I~iW 277 (701)
-|+.-+.++...+..+++|+.||.++||+...+.. ..+.||.++|.+++|.-.. ..+++||.|.++++|
T Consensus 103 ~hdDWVSsv~~~~~~IltgsYDg~~riWd~~Gk~~--------~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw 174 (423)
T KOG0313|consen 103 LHDDWVSSVKGASKWILTGSYDGTSRIWDLKGKSI--------KTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLW 174 (423)
T ss_pred cchhhhhhhcccCceEEEeecCCeeEEEecCCceE--------EEEecCCcceeeeEEEecCCccceEEEecCCceEEEE
Confidence 45666667777788999999999999999754332 3577899999988885433 359999999999999
Q ss_pred EeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCe
Q 005352 278 QVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEI 357 (701)
Q Consensus 278 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I 357 (701)
.++.+.... +.++...||...|
T Consensus 175 ~~~~~~~~~----------------------------------------------------------~~~~~~~GHk~~V 196 (423)
T KOG0313|consen 175 KWNVGENKV----------------------------------------------------------KALKVCRGHKRSV 196 (423)
T ss_pred EecCchhhh----------------------------------------------------------hHHhHhcccccce
Confidence 998765221 2233345999999
Q ss_pred EEEEEecCC-eEEEEECCCcEEEEECCC-------------------------Ceeeeee-cCCCCeEEEEEeeCCCCEE
Q 005352 358 LDLSWSKNN-YLLSASIDKTVRLWRVGN-------------------------DHCLRVF-PHSNYVTCVHFNPVDDNYF 410 (701)
Q Consensus 358 ~~l~~s~~~-~l~s~s~dg~I~iWd~~~-------------------------~~~~~~~-~h~~~V~~l~f~p~~~~~l 410 (701)
-+++..+++ .+++|+.|.+|+||+..+ +.++.++ .|..+|.++.|++ ...+
T Consensus 197 ~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d--~~v~ 274 (423)
T KOG0313|consen 197 DSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD--ATVI 274 (423)
T ss_pred eEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC--CCce
Confidence 999999999 999999999999999321 1123333 3999999999985 6789
Q ss_pred EEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCee
Q 005352 411 ISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRIT 490 (701)
Q Consensus 411 ~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~ 490 (701)
++++.|.+|+.||+.++..+........++++.++|..++|++|+.|..+++||.+++.-.. +......|.+.|.
T Consensus 275 yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~-----v~~s~~gH~nwVs 349 (423)
T KOG0313|consen 275 YSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSV-----VSQSLIGHKNWVS 349 (423)
T ss_pred EeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCce-----eEEeeecchhhhh
Confidence 99999999999999999999888889999999999999999999999999999999875332 2222456778999
Q ss_pred EEEEecCCCCEEEEEECCCcEEEEeCCccc-eeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 005352 491 GFQFLPQDSSKVMVSCADSQVRILQGPNVI-GKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCI 559 (701)
Q Consensus 491 ~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~-~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~ 559 (701)
++.|+|.+...|++++.|+++++||++... ..|...+|...|.++.|. ++.+|++|+.|.+|+|+.-.
T Consensus 350 svkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 350 SVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred heecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEEeccc
Confidence 999999999999999999999999999777 778888899999999996 56799999999999999743
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-28 Score=245.52 Aligned_cols=275 Identities=20% Similarity=0.348 Sum_probs=233.6
Q ss_pred CcceeeecC--ccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeec
Q 005352 204 GEGERVRLN--EEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVE 281 (701)
Q Consensus 204 ~~~~~~~~~--~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~ 281 (701)
..++++..+ +..+++|..+|.++||+... .+. ..|..|+++|.+++|+..|.||++++.|+++.+||..+
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G---~l~-----~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~ 307 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDG---NLI-----STLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHT 307 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEecCc---hhh-----hhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccC
Confidence 456667666 77899999999999998543 222 23556999999999999999999999999999999988
Q ss_pred CeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEE
Q 005352 282 DERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLS 361 (701)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~ 361 (701)
+...+. +.-|..+-.++.
T Consensus 308 g~~~q~--------------------------------------------------------------f~~~s~~~lDVd 325 (524)
T KOG0273|consen 308 GTVKQQ--------------------------------------------------------------FEFHSAPALDVD 325 (524)
T ss_pred ceEEEe--------------------------------------------------------------eeeccCCccceE
Confidence 864433 334666667899
Q ss_pred EecCCeEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEE-EEecCCCcE
Q 005352 362 WSKNNYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIV 439 (701)
Q Consensus 362 ~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~-~~~~~~~~i 439 (701)
|..+..|++++.|+.|+|+.+....++.++. |.+.|.++.|+| .+.+|++++.|++++||++...... .+..|...|
T Consensus 326 W~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~-tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei 404 (524)
T KOG0273|consen 326 WQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNP-TGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEI 404 (524)
T ss_pred EecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECC-CCceEEEecCCCeeEeeecCCCcchhhhhhhccce
Confidence 9888899999999999999999999998887 999999999999 9999999999999999998766655 567788899
Q ss_pred EEEEEeeCC---------CeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCc
Q 005352 440 TAVCYRPDG---------QGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQ 510 (701)
Q Consensus 440 ~~i~~sp~g---------~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~ 510 (701)
..+.|+|.| ..+++++.|++|++||+..+.+... ...|..+|.+++|+| ++.++++|+.||.
T Consensus 405 ~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~--------f~kH~~pVysvafS~-~g~ylAsGs~dg~ 475 (524)
T KOG0273|consen 405 YTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHT--------LMKHQEPVYSVAFSP-NGRYLASGSLDGC 475 (524)
T ss_pred eeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEe--------eccCCCceEEEEecC-CCcEEEecCCCCe
Confidence 999999964 4689999999999999998876532 345778999999999 8999999999999
Q ss_pred EEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 005352 511 VRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCI 559 (701)
Q Consensus 511 I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~ 559 (701)
|.||+.+.... ++.....+.|..++|+.+|.+|..+-.|+.+++-|+.
T Consensus 476 V~iws~~~~~l-~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 476 VHIWSTKTGKL-VKSYQGTGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred eEeccccchhe-eEeecCCCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 99999886443 3334466779999999999999999999999998874
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.9e-28 Score=246.36 Aligned_cols=278 Identities=23% Similarity=0.420 Sum_probs=229.4
Q ss_pred cccCcceeeecCc--cccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEE
Q 005352 201 DKQGEGERVRLNE--EDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQ 278 (701)
Q Consensus 201 ~~~~~~~~~~~~~--~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd 278 (701)
.|...+.++.+++ +.+++++.++.+++|+..... ....+.+|...+..+.|+|++++|++++.||.|++|+
T Consensus 7 ~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~-------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~ 79 (289)
T cd00200 7 GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE-------LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWD 79 (289)
T ss_pred ccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCC-------cEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEE
Confidence 3555666655544 677788889999999986443 2235677999999999999999999999999999999
Q ss_pred eecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeE
Q 005352 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEIL 358 (701)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~ 358 (701)
+.+++ .+..+..|...|.
T Consensus 80 ~~~~~--------------------------------------------------------------~~~~~~~~~~~i~ 97 (289)
T cd00200 80 LETGE--------------------------------------------------------------CVRTLTGHTSYVS 97 (289)
T ss_pred cCccc--------------------------------------------------------------ceEEEeccCCcEE
Confidence 97652 2344567888999
Q ss_pred EEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEE-EecC
Q 005352 359 DLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD-WVDI 435 (701)
Q Consensus 359 ~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~-~~~~ 435 (701)
++.|++++ ++++++.++.|++||+.+++....+. |...+.+++|+| ++.++++++.++.|++||+++++.+. ...+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~ 176 (289)
T cd00200 98 SVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSP-DGTFVASSSQDGTIKLWDLRTGKCVATLTGH 176 (289)
T ss_pred EEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcC-cCCEEEEEcCCCcEEEEEccccccceeEecC
Confidence 99999998 77777779999999999888888877 888999999999 78888888889999999999777664 4456
Q ss_pred CCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEe
Q 005352 436 RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQ 515 (701)
Q Consensus 436 ~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd 515 (701)
...+.+++|+|+++.+++++.++.+++||++..+.... ...+...+.++.|+| ++.++++++.++.|++|+
T Consensus 177 ~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~--------~~~~~~~i~~~~~~~-~~~~~~~~~~~~~i~i~~ 247 (289)
T cd00200 177 TGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGT--------LRGHENGVNSVAFSP-DGYLLASGSEDGTIRVWD 247 (289)
T ss_pred ccccceEEECCCcCEEEEecCCCcEEEEECCCCceecc--------hhhcCCceEEEEEcC-CCcEEEEEcCCCcEEEEE
Confidence 67899999999999999999999999999987554321 123456899999999 477888887799999999
Q ss_pred CCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEe
Q 005352 516 GPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWN 557 (701)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd 557 (701)
............|...+.+++|+|++.+|++++.||.|++|+
T Consensus 248 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 248 LRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred cCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 986555555446788999999999999999999999999996
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.9e-28 Score=281.34 Aligned_cols=290 Identities=16% Similarity=0.231 Sum_probs=223.4
Q ss_pred ccCcceeee--cCccccccccccceEEEEEccCccchhhhc-ccCceeccCCCcEEEEEEcc-CCCEEEEEeCCCcEEEE
Q 005352 202 KQGEGERVR--LNEEDAMFCSKVQRVKVYHCKKRSKELSAL-YKGQEIQAHDGSILTMKFSP-DGQYLASAGDDGVVRLW 277 (701)
Q Consensus 202 ~~~~~~~~~--~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~-~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~I~iW 277 (701)
|...+.++. ++++.+++++.|+.|+||+........... .....+. +...|.+++|++ ++.+||+++.||+|+||
T Consensus 482 ~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~lW 560 (793)
T PLN00181 482 SSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQVW 560 (793)
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeEEEE
Confidence 444455544 456678899999999999975321111100 1111233 456899999987 47899999999999999
Q ss_pred EeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCe
Q 005352 278 QVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEI 357 (701)
Q Consensus 278 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I 357 (701)
|+.+++ .+..+.+|.+.|
T Consensus 561 d~~~~~--------------------------------------------------------------~~~~~~~H~~~V 578 (793)
T PLN00181 561 DVARSQ--------------------------------------------------------------LVTEMKEHEKRV 578 (793)
T ss_pred ECCCCe--------------------------------------------------------------EEEEecCCCCCE
Confidence 997764 234567899999
Q ss_pred EEEEEec-CC-eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCc--EEEEe
Q 005352 358 LDLSWSK-NN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH--VVDWV 433 (701)
Q Consensus 358 ~~l~~s~-~~-~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~--~~~~~ 433 (701)
++++|+| ++ +|++|+.|++|++||+.++.++..+.+...|.++.|++.++.+|++|+.||.|++||+++.+ .....
T Consensus 579 ~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~ 658 (793)
T PLN00181 579 WSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMI 658 (793)
T ss_pred EEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEec
Confidence 9999997 55 99999999999999999999998888778899999976579999999999999999998765 33566
Q ss_pred cCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEE
Q 005352 434 DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRI 513 (701)
Q Consensus 434 ~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~i 513 (701)
.|...|.++.|. ++..|++++.|+.|++||++........ ........|...+..+.|+| ++.+|++|+.|+.|++
T Consensus 659 ~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~--~~l~~~~gh~~~i~~v~~s~-~~~~lasgs~D~~v~i 734 (793)
T PLN00181 659 GHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINE--TPLHSFMGHTNVKNFVGLSV-SDGYIATGSETNEVFV 734 (793)
T ss_pred CCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCC--cceEEEcCCCCCeeEEEEcC-CCCEEEEEeCCCEEEE
Confidence 788999999997 7889999999999999999753210000 00111334567788999999 6789999999999999
Q ss_pred EeCCcccee--ee-----------cccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 005352 514 LQGPNVIGK--YK-----------GLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNC 558 (701)
Q Consensus 514 wd~~~~~~~--~~-----------~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~ 558 (701)
|+....... +. ...+...|.+++|+|++.+|++|+.||.|+||++
T Consensus 735 w~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 735 YHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 997543211 11 1224456999999999999999999999999986
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-28 Score=248.56 Aligned_cols=274 Identities=14% Similarity=0.268 Sum_probs=225.4
Q ss_pred eeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEe
Q 005352 245 EIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSL 324 (701)
Q Consensus 245 ~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (701)
.++.|...|.++.|+|....++++-..|.|.|||.++...+..+.
T Consensus 8 k~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfe----------------------------------- 52 (794)
T KOG0276|consen 8 KFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFE----------------------------------- 52 (794)
T ss_pred HhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeee-----------------------------------
Confidence 456699999999999999999999999999999999886554443
Q ss_pred eecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEE
Q 005352 325 RRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHF 402 (701)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f 402 (701)
-..-+|.+..|-... .+++|+.|..|+||+.++++.+..|. |.++|+|++.
T Consensus 53 ---------------------------V~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iav 105 (794)
T KOG0276|consen 53 ---------------------------VSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAV 105 (794)
T ss_pred ---------------------------ecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeee
Confidence 234467777777665 99999999999999999999999998 9999999999
Q ss_pred eeCCCCEEEEEEcCCcEEEEeCCCCcE--EEEecCCCcEEEEEEee-CCCeEEEEecCCcEEEEECCCCeeeeeeeEEee
Q 005352 403 NPVDDNYFISGSIDGKVRIWAVLSCHV--VDWVDIRQIVTAVCYRP-DGQGGIVGSMMGDCRFYNVSDNHLELDAEICVH 479 (701)
Q Consensus 403 ~p~~~~~l~sgs~dg~v~iwd~~~~~~--~~~~~~~~~i~~i~~sp-~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~ 479 (701)
+| ...++++++.|-+|++||....=. ..+.+|..-|++++|+| |.+.+++++-|++|++|.+........
T Consensus 106 HP-t~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfT------ 178 (794)
T KOG0276|consen 106 HP-TLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFT------ 178 (794)
T ss_pred cC-CCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCcee------
Confidence 99 888999999999999999987632 25668999999999999 678999999999999999987654332
Q ss_pred cccCCCCCCeeEEEEecC-CCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 005352 480 SKKKAPCKRITGFQFLPQ-DSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNC 558 (701)
Q Consensus 480 ~~~~~~~~~i~~l~~~p~-~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~ 558 (701)
...|...|+++.+-+. +..+|++|+.|..|+|||..+..+.....+|...|..++|+|.-..|+||++||+++||+-
T Consensus 179 --l~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs 256 (794)
T KOG0276|consen 179 --LEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNS 256 (794)
T ss_pred --eeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecC
Confidence 3357788999999883 3469999999999999999987777766779999999999999999999999999999998
Q ss_pred CCCCCCCc--cccccccccccccCCceEEecCC
Q 005352 559 IGHEEPAH--DQAKTIRSLERFTTNASIAIPWC 589 (701)
Q Consensus 559 ~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~~ 589 (701)
.+-+.... .....++.+.....+..+++...
T Consensus 257 ~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~D 289 (794)
T KOG0276|consen 257 KTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFD 289 (794)
T ss_pred cceehhhhhhcCCceEEEEeecCCCCeEEEecc
Confidence 87653221 12334444544444444554444
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-28 Score=258.61 Aligned_cols=278 Identities=17% Similarity=0.329 Sum_probs=233.5
Q ss_pred eeeecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeee
Q 005352 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLT 286 (701)
Q Consensus 207 ~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~ 286 (701)
.++++....++++-..|.|++||++-... ...+..|.|+|..+.|+|.+.+++|||.|-.|+||+..+.+
T Consensus 15 lsFHP~rPwILtslHsG~IQlWDYRM~tl-------i~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rr--- 84 (1202)
T KOG0292|consen 15 LSFHPKRPWILTSLHSGVIQLWDYRMGTL-------IDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRR--- 84 (1202)
T ss_pred eecCCCCCEEEEeecCceeeeehhhhhhH-------HhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccce---
Confidence 45666667888899999999999865321 23467799999999999999999999999999999998764
Q ss_pred eecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC
Q 005352 287 EVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN 366 (701)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~ 366 (701)
.+.++.||-+-|..+.|++.-
T Consensus 85 -----------------------------------------------------------clftL~GHlDYVRt~~FHhey 105 (1202)
T KOG0292|consen 85 -----------------------------------------------------------CLFTLLGHLDYVRTVFFHHEY 105 (1202)
T ss_pred -----------------------------------------------------------ehhhhccccceeEEeeccCCC
Confidence 455678999999999999998
Q ss_pred -eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCc----------------
Q 005352 367 -YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH---------------- 428 (701)
Q Consensus 367 -~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~---------------- 428 (701)
.++++|.|.+|+||+..+++|+..+. |+.+|.|.+|+| ...++++++.|.+|||||+..-+
T Consensus 106 PWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhp-tEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~ 184 (1202)
T KOG0292|consen 106 PWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHP-TEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQ 184 (1202)
T ss_pred ceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCC-ccceEEEecccceEEEEeecchhccCCCCCCchhhhhcc
Confidence 99999999999999999999999987 999999999999 89999999999999999984310
Q ss_pred ------------EE--EEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEE
Q 005352 429 ------------VV--DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQF 494 (701)
Q Consensus 429 ------------~~--~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 494 (701)
++ ...+|...|+.++|+|.-..+++|+.|..|++|.++..+.- .. .....|.+.|+++-|
T Consensus 185 ~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaW-----Ev-DtcrgH~nnVssvlf 258 (1202)
T KOG0292|consen 185 QGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAW-----EV-DTCRGHYNNVSSVLF 258 (1202)
T ss_pred ccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccce-----ee-hhhhcccCCcceEEe
Confidence 11 13357788999999999999999999999999999765421 11 124678899999999
Q ss_pred ecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 495 LPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 495 ~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
+| ..+++++.+.|+.|+|||+..........+.......++-+|..++++.| .|+-+.+|.++...
T Consensus 259 hp-~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAg-HDsGm~VFkleREr 324 (1202)
T KOG0292|consen 259 HP-HQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAG-HDSGMIVFKLERER 324 (1202)
T ss_pred cC-ccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeee-cCCceEEEEEcccC
Confidence 99 78999999999999999998766665555577889999999999877766 46667888887443
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-27 Score=249.91 Aligned_cols=424 Identities=16% Similarity=0.242 Sum_probs=297.9
Q ss_pred cccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCC
Q 005352 214 EDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEI 293 (701)
Q Consensus 214 ~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~ 293 (701)
.+.++++....|.+||++....+..-.. ..-+..|+|+.-+|+..+||.|-.||.|+||+..+...+..+..+..
T Consensus 34 Gr~va~~a~E~vn~WdlRtge~~~~l~~-----~~~k~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~ 108 (888)
T KOG0306|consen 34 GRAVAVSALEQVNIWDLRTGEIEKKLIL-----LKKKAEVTCLRSSDDILLLAVGYADGSVQIFSLESEEILITFNGHKA 108 (888)
T ss_pred CcEEEEeccccEeEEeeecchhhhhhhh-----hcccceEEEeeccCCcceEEEEecCceEEeeccCCCceeeeeccccc
Confidence 5566677888999999987743322111 12346899999999999999999999999999988766666655554
Q ss_pred CCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEE
Q 005352 294 DPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSAS 372 (701)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s 372 (701)
.+.++.| +..+..+. .++.+..+++++.- .+.-+..+.||++.|+..-|..+. .+++.+
T Consensus 109 AVt~l~f-------------d~~G~rla---SGskDt~IIvwDlV----~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~s 168 (888)
T KOG0306|consen 109 AVTTLKF-------------DKIGTRLA---SGSKDTDIIVWDLV----GEEGLFRLRGHKDSITQALFLNGDSFLVSVS 168 (888)
T ss_pred ceEEEEE-------------cccCceEe---ecCCCccEEEEEec----cceeeEEeecchHHHhHHhccCCCeEEEEec
Confidence 4444333 33322222 23334444444321 234567889999999999998855 999999
Q ss_pred CCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCC-------------------------
Q 005352 373 IDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS------------------------- 426 (701)
Q Consensus 373 ~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~------------------------- 426 (701)
.|+.|++||+.+..|..+.- |.+.|..+++.+ +.+++++.|+.+++|++..
T Consensus 169 KDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~---~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~ 245 (888)
T KOG0306|consen 169 KDSMIKFWDLETQHCFETHVDHRGEIWALVLDE---KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKG 245 (888)
T ss_pred cCceEEEEecccceeeeEEecccceEEEEEEec---ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCC
Confidence 99999999999999998764 999999999975 7899999999999998700
Q ss_pred --------------------------------------------------------------------------------
Q 005352 427 -------------------------------------------------------------------------------- 426 (701)
Q Consensus 427 -------------------------------------------------------------------------------- 426 (701)
T Consensus 246 R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks 325 (888)
T KOG0306|consen 246 REINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKS 325 (888)
T ss_pred ceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeE
Confidence
Q ss_pred -------CcE-------------------------------EEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCC
Q 005352 427 -------CHV-------------------------------VDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDN 468 (701)
Q Consensus 427 -------~~~-------------------------------~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~ 468 (701)
+.. +...+|+..|.+++++.+...+++|+ .+.+++|+..+.
T Consensus 326 ~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~ 404 (888)
T KOG0306|consen 326 FDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTL 404 (888)
T ss_pred EEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCc
Confidence 000 11223455577788887765555554 578999999987
Q ss_pred eeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEe
Q 005352 469 HLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAG 548 (701)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs 548 (701)
++... -.+..+.+..|.| ++.++++|...|.+.+||+......-....|.+.|.+++.+||+..++|||
T Consensus 405 kciRT----------i~~~y~l~~~Fvp-gd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~s 473 (888)
T KOG0306|consen 405 KCIRT----------ITCGYILASKFVP-GDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGS 473 (888)
T ss_pred ceeEE----------eccccEEEEEecC-CCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEec
Confidence 76532 2234688899999 789999999999999999876554444446999999999999999999999
Q ss_pred CCCcEEEEeCCCCCC-CCcc----ccccccccc---------cccCCceEEecCCCCC----CCCCCCCCccccCCCCCC
Q 005352 549 EDSNVYMWNCIGHEE-PAHD----QAKTIRSLE---------RFTTNASIAIPWCGLK----CGNAEKEPQLHVSDDDSP 610 (701)
Q Consensus 549 ~Dg~I~iWd~~~~~~-~~~~----~~~~~~~~~---------~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~~~~~ 610 (701)
.|.+|++|++.--.. +... ..+..+.++ ..+....+|+..-..+ +-+..+-....+.+.-++
T Consensus 474 aDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV 553 (888)
T KOG0306|consen 474 ADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPV 553 (888)
T ss_pred CCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccce
Confidence 999999999753221 1111 111112222 2222222222211110 001000000112233345
Q ss_pred CccccCCCccccCccccccCCCCcccCCCCccCCCCccccccccchhhhhhhhhcccccccccCCCccEEEEecCCCeEe
Q 005352 611 ENLAFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIR 690 (701)
Q Consensus 611 ~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivTgg~DG~Ir 690 (701)
.++..+|+ +..++++|.|+.+++|-.+-+.+-+.+-+| ...|-++.|-+. .+++.|+|.||.||
T Consensus 554 ~smDIS~D----SklivTgSADKnVKiWGLdFGDCHKS~fAH-----------dDSvm~V~F~P~-~~~FFt~gKD~kvK 617 (888)
T KOG0306|consen 554 LSMDISPD----SKLIVTGSADKNVKIWGLDFGDCHKSFFAH-----------DDSVMSVQFLPK-THLFFTCGKDGKVK 617 (888)
T ss_pred eEEeccCC----cCeEEeccCCCceEEeccccchhhhhhhcc-----------cCceeEEEEccc-ceeEEEecCcceEE
Confidence 56667997 788999999999999999999999988777 466777777787 89999999999999
Q ss_pred EEe
Q 005352 691 SFL 693 (701)
Q Consensus 691 vw~ 693 (701)
-|+
T Consensus 618 qWD 620 (888)
T KOG0306|consen 618 QWD 620 (888)
T ss_pred eec
Confidence 994
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-27 Score=230.66 Aligned_cols=319 Identities=15% Similarity=0.191 Sum_probs=247.3
Q ss_pred cccCcceeeecC--ccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEE
Q 005352 201 DKQGEGERVRLN--EEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQ 278 (701)
Q Consensus 201 ~~~~~~~~~~~~--~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd 278 (701)
.|...+-+++.+ ...+++|+.|..-.||+..... . .-++.+|+..|+++.|+.+|.|||||+.+|.|+||+
T Consensus 62 ~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge--~-----~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 62 KHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGE--F-----AGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFK 134 (399)
T ss_pred hcCCceEEEEeCCCCceEEecCCCceEEEEEccCCc--c-----eeEecCCCCceEEEEEccCceEEEecCCCccEEEEE
Confidence 466666655544 4567789999999999876554 1 236788999999999999999999999999999999
Q ss_pred eecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccC-CCeEEEcCCccCe
Q 005352 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILE-KPLHEFHGHSGEI 357 (701)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~h~~~I 357 (701)
..++.....+...-..... +.+.+....+ +.+..++.+..| ++.+ ...+.+.||..++
T Consensus 135 ~stg~~~~~~~~e~~dieW-------------l~WHp~a~il---lAG~~DGsvWmw-----~ip~~~~~kv~~Gh~~~c 193 (399)
T KOG0296|consen 135 VSTGGEQWKLDQEVEDIEW-------------LKWHPRAHIL---LAGSTDGSVWMW-----QIPSQALCKVMSGHNSPC 193 (399)
T ss_pred cccCceEEEeecccCceEE-------------EEecccccEE---EeecCCCcEEEE-----ECCCcceeeEecCCCCCc
Confidence 9998765555322222222 2222211111 112222222222 2222 5567889999999
Q ss_pred EEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec--CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEec
Q 005352 358 LDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVD 434 (701)
Q Consensus 358 ~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~ 434 (701)
++=.|.|+| .++++..||+|++||..+++++..+. ......++.++. .+..++.|..++.+++-+..+++++....
T Consensus 194 t~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~-~~~~~~~g~~e~~~~~~~~~sgKVv~~~n 272 (399)
T KOG0296|consen 194 TCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNL-AGSTLTKGNSEGVACGVNNGSGKVVNCNN 272 (399)
T ss_pred ccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCcccccc-ccceeEeccCCccEEEEccccceEEEecC
Confidence 999999999 99999999999999999999998886 345678899988 88999999999999999999998875544
Q ss_pred ---------CCCcEEEE---EEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEE
Q 005352 435 ---------IRQIVTAV---CYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKV 502 (701)
Q Consensus 435 ---------~~~~i~~i---~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l 502 (701)
+...+.++ .++..-...++|+.||+|.|||+....+.. .-.|...|+.+.|.+ ..+|
T Consensus 273 ~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~---------~c~he~~V~~l~w~~--t~~l 341 (399)
T KOG0296|consen 273 GTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRH---------ICEHEDGVTKLKWLN--TDYL 341 (399)
T ss_pred CCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhhe---------eccCCCceEEEEEcC--cchh
Confidence 22334444 444455688999999999999998765432 334557799999988 6899
Q ss_pred EEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 005352 503 MVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCI 559 (701)
Q Consensus 503 ~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~ 559 (701)
++++.+|.|+.||.++...++...+|...|.+++++|++++++|+|.|++.+|+++.
T Consensus 342 ~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 342 LTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred eeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 999999999999999999999888899999999999999999999999999999864
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.3e-29 Score=237.36 Aligned_cols=255 Identities=24% Similarity=0.447 Sum_probs=218.5
Q ss_pred cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeec
Q 005352 248 AHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRT 327 (701)
Q Consensus 248 ~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (701)
+.+.-+-|..|||||+||++|+.||.|.+||..+++....++..
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQ------------------------------------ 254 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQ------------------------------------ 254 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhh------------------------------------
Confidence 45677889999999999999999999999999998754433211
Q ss_pred CCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec--CCCCeEEEEEee
Q 005352 328 SESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP--HSNYVTCVHFNP 404 (701)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p 404 (701)
....|.-|...|.|+.|+.+. .|++|+.||.|++|.+.+|.|++.|. |...|+|+.|+.
T Consensus 255 ------------------Aqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSr 316 (508)
T KOG0275|consen 255 ------------------AQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSR 316 (508)
T ss_pred ------------------hhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEcc
Confidence 112344578899999999998 99999999999999999999999997 999999999999
Q ss_pred CCCCEEEEEEcCCcEEEEeCCCCcEE-EEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccC
Q 005352 405 VDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKK 483 (701)
Q Consensus 405 ~~~~~l~sgs~dg~v~iwd~~~~~~~-~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~ 483 (701)
++..+++++.|.+++|.-+.+++++ .+.+|..-|+...|.++|..+++++.||+|++|+..+..+..... ..
T Consensus 317 -D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk------~~ 389 (508)
T KOG0275|consen 317 -DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFK------PL 389 (508)
T ss_pred -CcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhcc------CC
Confidence 9999999999999999999999987 567899999999999999999999999999999999887654332 23
Q ss_pred CCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCcc-ceeee-cccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 005352 484 APCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV-IGKYK-GLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGH 561 (701)
Q Consensus 484 ~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~-~~~~~-~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~ 561 (701)
....+|..+...|.++..++++...++|+|.++... ...+. +.+..+...+++.+|.|.++.+.++|+.+|.+.+.++
T Consensus 390 ~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG 469 (508)
T KOG0275|consen 390 GTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSG 469 (508)
T ss_pred CCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecC
Confidence 355788999999989999999999999999998743 33332 3445677888999999999999999999999999988
Q ss_pred CC
Q 005352 562 EE 563 (701)
Q Consensus 562 ~~ 563 (701)
+.
T Consensus 470 ~L 471 (508)
T KOG0275|consen 470 KL 471 (508)
T ss_pred ce
Confidence 73
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9e-28 Score=222.69 Aligned_cols=233 Identities=18% Similarity=0.317 Sum_probs=200.6
Q ss_pred eeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEe
Q 005352 245 EIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSL 324 (701)
Q Consensus 245 ~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (701)
.++||+.+++.|+|+.+|.+|.||+.|.++.||--.++++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGer---------------------------------------- 44 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGER---------------------------------------- 44 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCce----------------------------------------
Confidence 4789999999999999999999999999999998877754
Q ss_pred eecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEe
Q 005352 325 RRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFN 403 (701)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~ 403 (701)
+-++.||++.|+|+....+. +++||+.|.++++||+.+|+++..++...+|..+.|+
T Consensus 45 ----------------------lGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~ 102 (327)
T KOG0643|consen 45 ----------------------LGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFS 102 (327)
T ss_pred ----------------------eeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeec
Confidence 45668999999999998888 9999999999999999999999999999999999999
Q ss_pred eCCCCEEEEEEc-----CCcEEEEeCCC-------Cc-EEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCee
Q 005352 404 PVDDNYFISGSI-----DGKVRIWAVLS-------CH-VVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHL 470 (701)
Q Consensus 404 p~~~~~l~sgs~-----dg~v~iwd~~~-------~~-~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~ 470 (701)
+ ++++++.... .+.|.++|++. .. ...+..+...++.+-|.|-+++|++|..+|.|.+||+++++.
T Consensus 103 ~-~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~ 181 (327)
T KOG0643|consen 103 F-GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKE 181 (327)
T ss_pred c-CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCce
Confidence 9 8888777653 36799999983 33 445666778999999999999999999999999999999865
Q ss_pred eeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeC
Q 005352 471 ELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGE 549 (701)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~ 549 (701)
... ....|...|+.+++++ +..++++++.|.+-++||..+....- ......+|++.+++|...+++.|+.
T Consensus 182 ~v~-------s~~~h~~~Ind~q~s~-d~T~FiT~s~Dttakl~D~~tl~v~K-ty~te~PvN~aaisP~~d~VilgGG 251 (327)
T KOG0643|consen 182 LVD-------SDEEHSSKINDLQFSR-DRTYFITGSKDTTAKLVDVRTLEVLK-TYTTERPVNTAAISPLLDHVILGGG 251 (327)
T ss_pred eee-------chhhhccccccccccC-CcceEEecccCccceeeeccceeeEE-EeeecccccceecccccceEEecCC
Confidence 432 2344667899999999 79999999999999999998654332 2336789999999999888888764
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-28 Score=241.68 Aligned_cols=281 Identities=21% Similarity=0.283 Sum_probs=238.2
Q ss_pred ccCcceeeecCc--cccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEe
Q 005352 202 KQGEGERVRLNE--EDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQV 279 (701)
Q Consensus 202 ~~~~~~~~~~~~--~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~ 279 (701)
|.++++.+.+.. +.+++|+.|..|++|+......++ ...|.|-.++|+.+.|.++++++++++.|+.+++|++
T Consensus 174 h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~-----~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnv 248 (459)
T KOG0288|consen 174 HEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSEL-----ISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNV 248 (459)
T ss_pred cccccceeEEccCcchhhhcchhhhhhhhhcccchhhh-----hhhhhccCCCcceeeecCCCceEEeecCCCceeeeec
Confidence 566777766544 578899999999999875543333 3457778899999999999999999999999999999
Q ss_pred ecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEE
Q 005352 280 VEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILD 359 (701)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~ 359 (701)
...+ ..+++.||++.|++
T Consensus 249 d~~r--------------------------------------------------------------~~~TLsGHtdkVt~ 266 (459)
T KOG0288|consen 249 DSLR--------------------------------------------------------------LRHTLSGHTDKVTA 266 (459)
T ss_pred cchh--------------------------------------------------------------hhhhhcccccceee
Confidence 8763 45677899999999
Q ss_pred EEEecCC-eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCc
Q 005352 360 LSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQI 438 (701)
Q Consensus 360 l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~ 438 (701)
+.|.... .+++|+.|.+|++||+....|.+++-....+..|..+ ...+++|..|++|++||+++..........+.
T Consensus 267 ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~---~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~ 343 (459)
T KOG0288|consen 267 AKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS---ISDVISGHFDKKVRFWDIRSADKTRSVPLGGR 343 (459)
T ss_pred ehhhccccceeeccccchhhhhhhhhhheeccccccccccceEec---ceeeeecccccceEEEeccCCceeeEeecCcc
Confidence 9998877 6999999999999999999999998877888888775 46799999999999999999999988888899
Q ss_pred EEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCc
Q 005352 439 VTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN 518 (701)
Q Consensus 439 i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~ 518 (701)
|+++..++++..+++.+.|.++.+.|+++........ ....+ -....+.+.|+| ++.|+++|+.||.|+||++.+
T Consensus 344 vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~s--A~g~k--~asDwtrvvfSp-d~~YvaAGS~dgsv~iW~v~t 418 (459)
T KOG0288|consen 344 VTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFS--AEGFK--CASDWTRVVFSP-DGSYVAAGSADGSVYIWSVFT 418 (459)
T ss_pred eeeEeeccCCeEEeeecCCCceeeeecccccEEEEee--ccccc--cccccceeEECC-CCceeeeccCCCcEEEEEccC
Confidence 9999999999999999999999999999887654322 11212 223488999999 899999999999999999987
Q ss_pred cceeeecccCCC--CeEEEEEecCCCEEEEEeCCCcEEEEe
Q 005352 519 VIGKYKGLRRSG--NQLSACFTSDGKHIVSAGEDSNVYMWN 557 (701)
Q Consensus 519 ~~~~~~~~~~~~--~v~~l~~s~dg~~l~sgs~Dg~I~iWd 557 (701)
.+..+.+..... .|++++|+|.|.+|++++.++.+.+|.
T Consensus 419 gKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 419 GKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred ceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 766665544333 599999999999999999999999993
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.4e-29 Score=234.62 Aligned_cols=285 Identities=22% Similarity=0.302 Sum_probs=237.6
Q ss_pred cCcceeeecCccccccccccceEEEEEccCc--cchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEee
Q 005352 203 QGEGERVRLNEEDAMFCSKVQRVKVYHCKKR--SKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVV 280 (701)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~--~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~ 280 (701)
..+...++++++++++|+.||.|.||++-.. .+++.- .....+--|..+|.||.||.|...||+|+.||.|+||.+.
T Consensus 215 h~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkY-QAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~ 293 (508)
T KOG0275|consen 215 HVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKY-QAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIE 293 (508)
T ss_pred chhheeeCCCCceEeeccccceeeeehhccchhhhhhhh-hhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEe
Confidence 4466778999999999999999999998533 223221 1112455589999999999999999999999999999999
Q ss_pred cCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEE
Q 005352 281 EDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDL 360 (701)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l 360 (701)
++.++..+. +.|+..|+|+
T Consensus 294 tG~ClRrFd-------------------------------------------------------------rAHtkGvt~l 312 (508)
T KOG0275|consen 294 TGQCLRRFD-------------------------------------------------------------RAHTKGVTCL 312 (508)
T ss_pred cchHHHHhh-------------------------------------------------------------hhhccCeeEE
Confidence 998776553 3699999999
Q ss_pred EEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEec---C
Q 005352 361 SWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVD---I 435 (701)
Q Consensus 361 ~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~---~ 435 (701)
.|+.++ .+++++.|.++++.-+.+|++++.|. |.++|+...|.+ +++.+++++.||+|++|+..+.+++..+. .
T Consensus 313 ~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~-dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~ 391 (508)
T KOG0275|consen 313 SFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTD-DGHHIISASSDGTVKVWHGKTTECLSTFKPLGT 391 (508)
T ss_pred EEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcC-CCCeEEEecCCccEEEecCcchhhhhhccCCCC
Confidence 999999 99999999999999999999999997 999999999999 99999999999999999999998875443 4
Q ss_pred CCcEEEEEEee-CCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEE
Q 005352 436 RQIVTAVCYRP-DGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRIL 514 (701)
Q Consensus 436 ~~~i~~i~~sp-~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iw 514 (701)
..+|+++-.-| +...++++...+++.+.++...-.. .....+...+...+...+| .+.++.+.+.|+.++.|
T Consensus 392 d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVr------sfsSGkREgGdFi~~~lSp-kGewiYcigED~vlYCF 464 (508)
T KOG0275|consen 392 DYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVR------SFSSGKREGGDFINAILSP-KGEWIYCIGEDGVLYCF 464 (508)
T ss_pred cccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEe------eeccCCccCCceEEEEecC-CCcEEEEEccCcEEEEE
Confidence 56788888877 4468889999999999998753221 1122233445667778899 79999999999999999
Q ss_pred eCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEe
Q 005352 515 QGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWN 557 (701)
Q Consensus 515 d~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd 557 (701)
.............|...+..++-+|..+.|++-++||.+++|.
T Consensus 465 ~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 465 SVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred EeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 9876666555566889999999999999999999999999996
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.4e-28 Score=218.55 Aligned_cols=276 Identities=18% Similarity=0.271 Sum_probs=222.4
Q ss_pred cccCcceeeecC--ccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEE
Q 005352 201 DKQGEGERVRLN--EEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQ 278 (701)
Q Consensus 201 ~~~~~~~~~~~~--~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd 278 (701)
.+++.+.+++++ +++.++++.|.+|++|+..+. ...+++.+|...|..++.+.|+..+++||.|..|.+||
T Consensus 15 ~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg-------~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwD 87 (307)
T KOG0316|consen 15 CAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRG-------ALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWD 87 (307)
T ss_pred ccccceEEEEEccCCCEEEEcCCCceEEeeccccc-------ceeeeecCCCceeeeccccccccccccCCCCceEEEEE
Confidence 356777777776 568889999999999974332 23356888999999999999999999999999999999
Q ss_pred eecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeE
Q 005352 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEIL 358 (701)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~ 358 (701)
+.+++ .++.|.+|.+.|.
T Consensus 88 V~TGk--------------------------------------------------------------v~Rr~rgH~aqVN 105 (307)
T KOG0316|consen 88 VNTGK--------------------------------------------------------------VDRRFRGHLAQVN 105 (307)
T ss_pred cccCe--------------------------------------------------------------eeeecccccceee
Confidence 99985 4556789999999
Q ss_pred EEEEecCC-eEEEEECCCcEEEEECCCC--eeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEec
Q 005352 359 DLSWSKNN-YLLSASIDKTVRLWRVGND--HCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVD 434 (701)
Q Consensus 359 ~l~~s~~~-~l~s~s~dg~I~iWd~~~~--~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~ 434 (701)
.++|+.+. .+++|+.|.++++||-++. ++++.+. ..+.|.++..+ +..|++|+.||++|.||++.++...- .
T Consensus 106 tV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~---~heIvaGS~DGtvRtydiR~G~l~sD-y 181 (307)
T KOG0316|consen 106 TVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA---EHEIVAGSVDGTVRTYDIRKGTLSSD-Y 181 (307)
T ss_pred EEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec---ccEEEeeccCCcEEEEEeecceeehh-h
Confidence 99999888 9999999999999998764 6777776 67889999884 57899999999999999999976632 2
Q ss_pred CCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEE
Q 005352 435 IRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRIL 514 (701)
Q Consensus 435 ~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iw 514 (701)
...+|++++|+++++..++++.++++++.|-.++++..... ..+.... -...+++. ...++++|+.||.|++|
T Consensus 182 ~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYk-----Ghkn~ey-kldc~l~q-sdthV~sgSEDG~Vy~w 254 (307)
T KOG0316|consen 182 FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYK-----GHKNMEY-KLDCCLNQ-SDTHVFSGSEDGKVYFW 254 (307)
T ss_pred cCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhc-----cccccee-eeeeeecc-cceeEEeccCCceEEEE
Confidence 35789999999999999999999999999999988653321 1111111 12344554 56899999999999999
Q ss_pred eCCccceeeecccCCCC-eEEEEEecCCCEEEEEeCCCcEEEEe
Q 005352 515 QGPNVIGKYKGLRRSGN-QLSACFTSDGKHIVSAGEDSNVYMWN 557 (701)
Q Consensus 515 d~~~~~~~~~~~~~~~~-v~~l~~s~dg~~l~sgs~Dg~I~iWd 557 (701)
|+.+.....+...+... +.+++++|.-..++++. ++.+..|-
T Consensus 255 dLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~-~~~~~~~~ 297 (307)
T KOG0316|consen 255 DLVDETQISKLSVVSTVIVTDLSCHPTMDDFITAT-GHGDLFWY 297 (307)
T ss_pred EeccceeeeeeccCCceeEEeeecccCccceeEec-CCceecee
Confidence 99877766666556665 89999999888788876 45566665
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-27 Score=218.96 Aligned_cols=267 Identities=19% Similarity=0.297 Sum_probs=230.4
Q ss_pred ceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEE
Q 005352 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (701)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (701)
+++++|.+.|.+++|+.+|..|++|+.|+++++|+++......
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~------------------------------------- 56 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRK------------------------------------- 56 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhh-------------------------------------
Confidence 6788999999999999999999999999999999997653211
Q ss_pred eeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC--eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEE
Q 005352 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVH 401 (701)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~--~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~ 401 (701)
-....+|.+.|-.++|+|.. .|++++.|++|++||++++++.........=.-+.
T Consensus 57 -----------------------~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~ 113 (313)
T KOG1407|consen 57 -----------------------ELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENINIT 113 (313)
T ss_pred -----------------------hhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcceEEE
Confidence 12347899999999999976 99999999999999999999999998777667789
Q ss_pred EeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecc
Q 005352 402 FNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSK 481 (701)
Q Consensus 402 f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~ 481 (701)
|+| ++.+++.+..|..|.+.|.++.+.+........+.-++|+-++.+++.....|.|.|.....-+.. ..
T Consensus 114 wsp-~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv--------~s 184 (313)
T KOG1407|consen 114 WSP-DGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPV--------QS 184 (313)
T ss_pred EcC-CCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccc--------cc
Confidence 999 999999999999999999999999988888888999999988888888888899999988754432 23
Q ss_pred cCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 005352 482 KKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGH 561 (701)
Q Consensus 482 ~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~ 561 (701)
.+.|.....||.|.| +++++++|+.|-.+.+||+..+...-...++.-+|..++|+.||++||+||+|-.|-|=++++|
T Consensus 185 i~AH~snCicI~f~p-~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetG 263 (313)
T KOG1407|consen 185 IKAHPSNCICIEFDP-DGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETG 263 (313)
T ss_pred cccCCcceEEEEECC-CCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccC
Confidence 456667888999999 8999999999999999999998888777779999999999999999999999999999998888
Q ss_pred CCCCccccccccccccccC-CceEEecCCCC
Q 005352 562 EEPAHDQAKTIRSLERFTT-NASIAIPWCGL 591 (701)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~-~~~~a~~~~~~ 591 (701)
.. +...++ .....++|++.
T Consensus 264 d~-----------~~eI~~~~~t~tVAWHPk 283 (313)
T KOG1407|consen 264 DR-----------VWEIPCEGPTFTVAWHPK 283 (313)
T ss_pred Ce-----------EEEeeccCCceeEEecCC
Confidence 72 223334 66666777765
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-28 Score=235.19 Aligned_cols=233 Identities=21% Similarity=0.326 Sum_probs=197.4
Q ss_pred CCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecC
Q 005352 249 HDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTS 328 (701)
Q Consensus 249 H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (701)
....|.|+.+ |...+++|..|++|+|||..+..
T Consensus 196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~--------------------------------------------- 228 (499)
T KOG0281|consen 196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLE--------------------------------------------- 228 (499)
T ss_pred cCCceEEEEe--cchhhhcccccCceEEeccccHH---------------------------------------------
Confidence 4567999999 45679999999999999987653
Q ss_pred CccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCCeEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCC
Q 005352 329 ESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDD 407 (701)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~ 407 (701)
.+..+.||++.|.|+.|... .+++|+.|.+|++||+++++++.++- |...|..+.|+ +
T Consensus 229 -----------------c~~~L~GHtGSVLCLqyd~r-viisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~---n 287 (499)
T KOG0281|consen 229 -----------------CLKILTGHTGSVLCLQYDER-VIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS---N 287 (499)
T ss_pred -----------------HHHhhhcCCCcEEeeeccce-EEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe---C
Confidence 34456899999999998533 89999999999999999999998875 88999999996 4
Q ss_pred CEEEEEEcCCcEEEEeCCCCcEE----EEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccC
Q 005352 408 NYFISGSIDGKVRIWAVLSCHVV----DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKK 483 (701)
Q Consensus 408 ~~l~sgs~dg~v~iwd~~~~~~~----~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~ 483 (701)
.++++++.|.++.+||+....-+ .+.+|...|+.+.|+ .+++++++.|.+|++|++.+.++.. ...
T Consensus 288 g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvR--------tl~ 357 (499)
T KOG0281|consen 288 GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVR--------TLN 357 (499)
T ss_pred CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeeh--------hhh
Confidence 79999999999999999876533 345789999999996 4599999999999999999887542 244
Q ss_pred CCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCC
Q 005352 484 APCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEE 563 (701)
Q Consensus 484 ~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~ 563 (701)
.|...|.|+++ .+.++++|+.|.+|++||+......-...+|..-|.++.| |.+.|++|+.||+|++||+..+..
T Consensus 358 gHkRGIAClQY---r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~krIVSGaYDGkikvWdl~aald 432 (499)
T KOG0281|consen 358 GHKRGIACLQY---RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALD 432 (499)
T ss_pred cccccceehhc---cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee--cCceeeeccccceEEEEecccccC
Confidence 56677888887 6789999999999999999876655555568999999999 567899999999999999998875
Q ss_pred C
Q 005352 564 P 564 (701)
Q Consensus 564 ~ 564 (701)
+
T Consensus 433 p 433 (499)
T KOG0281|consen 433 P 433 (499)
T ss_pred C
Confidence 4
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-27 Score=218.42 Aligned_cols=265 Identities=20% Similarity=0.329 Sum_probs=214.1
Q ss_pred ccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccC-CCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeE
Q 005352 221 KVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPD-GQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIY 299 (701)
Q Consensus 221 ~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~ 299 (701)
..|++.|-+.... ..+...+.+. -...+..++|+++ ...+++++.||.++|||+....
T Consensus 36 G~G~L~ile~~~~----~gi~e~~s~d-~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s---------------- 94 (311)
T KOG0277|consen 36 GNGRLFILEVTDP----KGIQECQSYD-TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPS---------------- 94 (311)
T ss_pred cCceEEEEecCCC----CCeEEEEeee-cccceeEeeecCCCcceEEEEecCceEEEeccCCCC----------------
Confidence 4677778776411 1111111121 3567999999996 5578899999999999954322
Q ss_pred EeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC--eEEEEECCCcE
Q 005352 300 FTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLSASIDKTV 377 (701)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~--~l~s~s~dg~I 377 (701)
+|++.++.|+.+|.++.|++-. .++++|.|++|
T Consensus 95 ---------------------------------------------~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~Ti 129 (311)
T KOG0277|consen 95 ---------------------------------------------KPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTI 129 (311)
T ss_pred ---------------------------------------------cchhHHHhhhhheEEeccccccceeEEeeccCCce
Confidence 6888999999999999999865 88889999999
Q ss_pred EEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCC-CcEEEEecCCCcEEEEEEee-CCCeEEEE
Q 005352 378 RLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS-CHVVDWVDIRQIVTAVCYRP-DGQGGIVG 454 (701)
Q Consensus 378 ~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~-~~~~~~~~~~~~i~~i~~sp-~g~~l~~g 454 (701)
++|+...++.+.+|. |...|...+|+|..+++|++++.|+++++||++. ++.+.+..|...|.++.|+. +...+++|
T Consensus 130 KLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg 209 (311)
T KOG0277|consen 130 KLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATG 209 (311)
T ss_pred EeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEec
Confidence 999999999999997 9999999999999999999999999999999985 45556777888999999997 56788999
Q ss_pred ecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceee-ecccCCCCeE
Q 005352 455 SMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKY-KGLRRSGNQL 533 (701)
Q Consensus 455 s~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~-~~~~~~~~v~ 533 (701)
+.|+.|+.||+++-+..+ .....|...|..+.|+|....+|++++.|-+++|||........ +...|..-+.
T Consensus 210 ~vd~~vr~wDir~~r~pl-------~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~ 282 (311)
T KOG0277|consen 210 GVDNLVRGWDIRNLRTPL-------FELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVC 282 (311)
T ss_pred CCCceEEEEehhhccccc-------eeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEe
Confidence 999999999999765321 12356778999999999888999999999999999976322221 2223778889
Q ss_pred EEEEec-CCCEEEEEeCCCcEEEEeC
Q 005352 534 SACFTS-DGKHIVSAGEDSNVYMWNC 558 (701)
Q Consensus 534 ~l~~s~-dg~~l~sgs~Dg~I~iWd~ 558 (701)
.+.|++ +..++|+++.|+.++||+.
T Consensus 283 g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 283 GLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ccccccccCceeeecccccceeeecc
Confidence 999987 5679999999999999983
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-26 Score=230.26 Aligned_cols=283 Identities=20% Similarity=0.327 Sum_probs=228.3
Q ss_pred ccCcceeeecCcc--ccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEe
Q 005352 202 KQGEGERVRLNEE--DAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQV 279 (701)
Q Consensus 202 ~~~~~~~~~~~~~--~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~ 279 (701)
....+..+++++. +..+.+..-++.||+..... .. +.+.-.+..|.++.|-.||++||.|+..|.|+|+|.
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~--~~-----k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~ 97 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRS--VR-----KTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDM 97 (487)
T ss_pred ccCcceeEecCCCCCCceEEecccEEEEEecchhh--hh-----hhHHhhccceeEEEeecCCeEEEccCCcCcEEEecc
Confidence 3445566666653 34445556678888754322 11 123335678999999999999999999999999995
Q ss_pred ecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEE
Q 005352 280 VEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILD 359 (701)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~ 359 (701)
.+. ..+..+.+|..+|..
T Consensus 98 k~r--------------------------------------------------------------~iLR~~~ah~apv~~ 115 (487)
T KOG0310|consen 98 KSR--------------------------------------------------------------VILRQLYAHQAPVHV 115 (487)
T ss_pred ccH--------------------------------------------------------------HHHHHHhhccCceeE
Confidence 442 234567889999999
Q ss_pred EEEecCC--eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCC-cEEEEecC
Q 005352 360 LSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSC-HVVDWVDI 435 (701)
Q Consensus 360 l~~s~~~--~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~-~~~~~~~~ 435 (701)
+.|+|.+ .|++|+.|+.+++||+.+......+. |+++|.|.+|+|.++.++++|+.||+|++||++.. ..+..++|
T Consensus 116 ~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnh 195 (487)
T KOG0310|consen 116 TKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNH 195 (487)
T ss_pred EEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecC
Confidence 9999987 89999999999999999988643443 99999999999988889999999999999999987 67788899
Q ss_pred CCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEe
Q 005352 436 RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQ 515 (701)
Q Consensus 436 ~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd 515 (701)
..+|..+.+-|.|..+++++. ..+++||+.++.... .....|...|+|+.+.. ++..|++++-|+.|++||
T Consensus 196 g~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll-------~~~~~H~KtVTcL~l~s-~~~rLlS~sLD~~VKVfd 266 (487)
T KOG0310|consen 196 GCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLL-------TSMFNHNKTVTCLRLAS-DSTRLLSGSLDRHVKVFD 266 (487)
T ss_pred CCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceeh-------hhhhcccceEEEEEeec-CCceEeecccccceEEEE
Confidence 999999999999999998875 679999999665432 12344778999999998 779999999999999999
Q ss_pred CCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCC
Q 005352 516 GPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEE 563 (701)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~ 563 (701)
..+.+..+. ....++|.+++.+|+++.++.|..||.+.+=+...+++
T Consensus 267 ~t~~Kvv~s-~~~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k~k 313 (487)
T KOG0310|consen 267 TTNYKVVHS-WKYPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREVKKK 313 (487)
T ss_pred ccceEEEEe-eecccceeeEEecCCCceEEEecccceeeeehhhcccC
Confidence 776555444 34779999999999999999999999998886655554
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-27 Score=219.57 Aligned_cols=245 Identities=22% Similarity=0.320 Sum_probs=208.7
Q ss_pred ceeccCCCcEEEEEEcc---CCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeecccccee
Q 005352 244 QEIQAHDGSILTMKFSP---DGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISI 320 (701)
Q Consensus 244 ~~l~~H~~~I~~l~fsp---dg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (701)
..-.||+.+|..++||| +|-+|++++.|+.-.+-+=+++
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tg-------------------------------------- 49 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTG-------------------------------------- 49 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCC--------------------------------------
Confidence 35678999999999986 7989999999998776665554
Q ss_pred eEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeecCCCCeEE
Q 005352 321 LKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTC 399 (701)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~ 399 (701)
.-+-+|.||++.|...+...+- ..++++.|-+-++||.-++..+..|.|...|..
T Consensus 50 ------------------------dwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~hkhivk~ 105 (334)
T KOG0278|consen 50 ------------------------DWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFEHKHIVKA 105 (334)
T ss_pred ------------------------CcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhhhhheeee
Confidence 2356788999999999998887 888999999999999999999999999999999
Q ss_pred EEEeeCCCCEEEEEEcCCcEEEEeCCCCc--EEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEE
Q 005352 400 VHFNPVDDNYFISGSIDGKVRIWAVLSCH--VVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEIC 477 (701)
Q Consensus 400 l~f~p~~~~~l~sgs~dg~v~iwd~~~~~--~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~ 477 (701)
++|+. +.++|++|+.+..+||||++..+ ...+.+|.+.|..+.|....+.|++.+.|++||+||.+++.......+
T Consensus 106 ~af~~-ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~- 183 (334)
T KOG0278|consen 106 VAFSQ-DSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEF- 183 (334)
T ss_pred EEecc-cchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEec-
Confidence 99998 99999999999999999998754 457778999999999999999999999999999999999876654332
Q ss_pred eecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEe
Q 005352 478 VHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWN 557 (701)
Q Consensus 478 ~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd 557 (701)
...++++.+++ ++ .+++....+.|.+||.+.... ++.......|.+.+++|+...+++|++|..++.||
T Consensus 184 --------~s~VtSlEvs~-dG-~ilTia~gssV~Fwdaksf~~-lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfD 252 (334)
T KOG0278|consen 184 --------NSPVTSLEVSQ-DG-RILTIAYGSSVKFWDAKSFGL-LKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFD 252 (334)
T ss_pred --------CCCCcceeecc-CC-CEEEEecCceeEEeccccccc-eeeccCccccccccccCCCceEEecCcceEEEEEe
Confidence 25688999998 44 456667788999999886433 22233557899999999999999999999999999
Q ss_pred CCCCCC
Q 005352 558 CIGHEE 563 (701)
Q Consensus 558 ~~~~~~ 563 (701)
+.++++
T Consensus 253 y~TgeE 258 (334)
T KOG0278|consen 253 YNTGEE 258 (334)
T ss_pred ccCCce
Confidence 999874
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.3e-27 Score=249.98 Aligned_cols=250 Identities=18% Similarity=0.338 Sum_probs=215.3
Q ss_pred CCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecC
Q 005352 249 HDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTS 328 (701)
Q Consensus 249 H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (701)
-...|..++|+|...+++++-..|.|++||..-+.
T Consensus 8 kSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~t--------------------------------------------- 42 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGT--------------------------------------------- 42 (1202)
T ss_pred ccccccceecCCCCCEEEEeecCceeeeehhhhhh---------------------------------------------
Confidence 46678999999999999999999999999987763
Q ss_pred CccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCC
Q 005352 329 ESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVD 406 (701)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~ 406 (701)
.+..|..|.++|..++|+|.+ +|++|+.|-.|++|+..+.+|+.++. |-++|..+.|++ .
T Consensus 43 -----------------li~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHh-e 104 (1202)
T KOG0292|consen 43 -----------------LIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHH-E 104 (1202)
T ss_pred -----------------HHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccC-C
Confidence 456678899999999999999 99999999999999999999998875 999999999999 8
Q ss_pred CCEEEEEEcCCcEEEEeCCCCcEE-EEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeee-----------
Q 005352 407 DNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDA----------- 474 (701)
Q Consensus 407 ~~~l~sgs~dg~v~iwd~~~~~~~-~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~----------- 474 (701)
-.++++++.|.+|+||+..+++++ ...+|..-|+|..|+|....+++++-|.+|++||+..-+.....
T Consensus 105 yPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~ 184 (1202)
T KOG0292|consen 105 YPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQ 184 (1202)
T ss_pred CceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhcc
Confidence 899999999999999999999988 56689999999999999999999999999999999743221110
Q ss_pred ----------eEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccce--eeecccCCCCeEEEEEecCCC
Q 005352 475 ----------EICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIG--KYKGLRRSGNQLSACFTSDGK 542 (701)
Q Consensus 475 ----------~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~--~~~~~~~~~~v~~l~~s~dg~ 542 (701)
...+.....+|...|+-++|+| .-.++++|+.|..|++|.+..... .-...+|...|.++-|+|...
T Consensus 185 ~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhp-TlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~ 263 (1202)
T KOG0292|consen 185 QGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHP-TLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQD 263 (1202)
T ss_pred ccchhhcCCcCeeeeeeecccccccceEEecC-CcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccc
Confidence 1112223456888999999999 678999999999999999874332 223345999999999999999
Q ss_pred EEEEEeCCCcEEEEeCCCCC
Q 005352 543 HIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 543 ~l~sgs~Dg~I~iWd~~~~~ 562 (701)
+|++.|+|++|+|||+....
T Consensus 264 lIlSnsEDksirVwDm~kRt 283 (1202)
T KOG0292|consen 264 LILSNSEDKSIRVWDMTKRT 283 (1202)
T ss_pred eeEecCCCccEEEEeccccc
Confidence 99999999999999998765
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-26 Score=228.54 Aligned_cols=281 Identities=22% Similarity=0.305 Sum_probs=222.3
Q ss_pred ccCcceee--ecCccccccccccceEEEEEccCccch---------hhhccc-Ccee-ccCCCcEEEEEEccCCCEEEEE
Q 005352 202 KQGEGERV--RLNEEDAMFCSKVQRVKVYHCKKRSKE---------LSALYK-GQEI-QAHDGSILTMKFSPDGQYLASA 268 (701)
Q Consensus 202 ~~~~~~~~--~~~~~~~~~~~~d~~v~vw~~~~~~~~---------~~~~~~-~~~l-~~H~~~I~~l~fspdg~~Lasg 268 (701)
|+-.+.++ ++++.+.+.++.+++|.-|+....... +...+. .+.- ++|...|.+++.|+||+|||||
T Consensus 141 H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatg 220 (479)
T KOG0299|consen 141 HQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATG 220 (479)
T ss_pred ccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEec
Confidence 34444443 455568888999999999987433211 110111 1111 4899999999999999999999
Q ss_pred eCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeE
Q 005352 269 GDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLH 348 (701)
Q Consensus 269 s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (701)
+.|..|.||+..+.+ +++
T Consensus 221 g~d~~v~Iw~~~t~e--------------------------------------------------------------hv~ 238 (479)
T KOG0299|consen 221 GRDRHVQIWDCDTLE--------------------------------------------------------------HVK 238 (479)
T ss_pred CCCceEEEecCcccc--------------------------------------------------------------hhh
Confidence 999999999998873 566
Q ss_pred EEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeee-cCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCC
Q 005352 349 EFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVF-PHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS 426 (701)
Q Consensus 349 ~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~-~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~ 426 (701)
.+.+|.+.|.+++|-... .|++++.|++|++|++.....+.++ .|++.|..|.... .++.+-+|+.|+++++|++..
T Consensus 239 ~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~-reR~vtVGgrDrT~rlwKi~e 317 (479)
T KOG0299|consen 239 VFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALS-RERCVTVGGRDRTVRLWKIPE 317 (479)
T ss_pred cccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhc-ccceEEeccccceeEEEeccc
Confidence 688999999999998776 9999999999999999988777665 5999999999886 777777788999999999987
Q ss_pred CcEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeeccc----CCCCCCeeEEEEecCCCCEE
Q 005352 427 CHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKK----KAPCKRITGFQFLPQDSSKV 502 (701)
Q Consensus 427 ~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~----~~~~~~i~~l~~~p~~~~~l 502 (701)
...+.+.++.+.+-|++|-.+ ..+++|+.+|.|.+|++...+............. ..+...|++++..| ..+++
T Consensus 318 esqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~-~sdL~ 395 (479)
T KOG0299|consen 318 ESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIP-GSDLL 395 (479)
T ss_pred cceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecc-cCceE
Confidence 777788888889999999754 5889999999999999998887665443322211 11224899999999 78999
Q ss_pred EEEECCCcEEEEeCCcc---ceeeecccCCCCeEEEEEecCCCEEEEE
Q 005352 503 MVSCADSQVRILQGPNV---IGKYKGLRRSGNQLSACFTSDGKHIVSA 547 (701)
Q Consensus 503 ~~~s~dg~I~iwd~~~~---~~~~~~~~~~~~v~~l~~s~dg~~l~sg 547 (701)
++|+.+|.|++|-+... ...+....-.+.|++++|+++|+.|++|
T Consensus 396 asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 396 ASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred EecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEe
Confidence 99999999999998765 3333334467889999999999977776
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.7e-26 Score=222.77 Aligned_cols=237 Identities=21% Similarity=0.340 Sum_probs=197.1
Q ss_pred CCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecC
Q 005352 249 HDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTS 328 (701)
Q Consensus 249 H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (701)
|...|.++... ++.++||+.||.++|||...
T Consensus 104 hdDWVSsv~~~--~~~IltgsYDg~~riWd~~G----------------------------------------------- 134 (423)
T KOG0313|consen 104 HDDWVSSVKGA--SKWILTGSYDGTSRIWDLKG----------------------------------------------- 134 (423)
T ss_pred chhhhhhhccc--CceEEEeecCCeeEEEecCC-----------------------------------------------
Confidence 89999999887 77999999999999999743
Q ss_pred CccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC----eEEEEECCCcEEEEECCCCeeeeee-----cCCCCeEE
Q 005352 329 ESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN----YLLSASIDKTVRLWRVGNDHCLRVF-----PHSNYVTC 399 (701)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~----~l~s~s~dg~I~iWd~~~~~~~~~~-----~h~~~V~~ 399 (701)
+..+.+.||.++|.+++|...+ .|++++.|.++++|.++.+...... .|...|.+
T Consensus 135 ----------------k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~s 198 (423)
T KOG0313|consen 135 ----------------KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDS 198 (423)
T ss_pred ----------------ceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeE
Confidence 3456678999999988886543 6999999999999998877543222 49999999
Q ss_pred EEEeeCCCCEEEEEEcCCcEEEEeCCC-------------------------C-cEEEEecCCCcEEEEEEeeCCCeEEE
Q 005352 400 VHFNPVDDNYFISGSIDGKVRIWAVLS-------------------------C-HVVDWVDIRQIVTAVCYRPDGQGGIV 453 (701)
Q Consensus 400 l~f~p~~~~~l~sgs~dg~v~iwd~~~-------------------------~-~~~~~~~~~~~i~~i~~sp~g~~l~~ 453 (701)
+...+ ++..|++|+.|..|.||+..+ + .++...+|..+|.++.|++ ...+++
T Consensus 199 Vsv~~-sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS 276 (423)
T KOG0313|consen 199 VSVDS-SGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYS 276 (423)
T ss_pred EEecC-CCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEe
Confidence 99999 999999999999999999321 0 1345678999999999998 678999
Q ss_pred EecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCcc---ceeeecccCCC
Q 005352 454 GSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV---IGKYKGLRRSG 530 (701)
Q Consensus 454 gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~---~~~~~~~~~~~ 530 (701)
++.|.+|+.||+.++...... .....++++.++| ...+|++|+.|..|++||.++. ...+...+|..
T Consensus 277 ~SwDHTIk~WDletg~~~~~~---------~~~ksl~~i~~~~-~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~n 346 (423)
T KOG0313|consen 277 VSWDHTIKVWDLETGGLKSTL---------TTNKSLNCISYSP-LSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKN 346 (423)
T ss_pred ecccceEEEEEeecccceeee---------ecCcceeEeeccc-ccceeeecCCCCceeecCCCCCCCceeEEeeecchh
Confidence 999999999999988765321 2236789999999 7899999999999999998753 23344556899
Q ss_pred CeEEEEEecCC-CEEEEEeCCCcEEEEeCCCCC
Q 005352 531 NQLSACFTSDG-KHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 531 ~v~~l~~s~dg-~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
.|.++.|+|.. .+|++|+.|+++++||+++.+
T Consensus 347 wVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k 379 (423)
T KOG0313|consen 347 WVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK 379 (423)
T ss_pred hhhheecCCCCceEEEEEecCCeEEEEEeccCC
Confidence 99999999965 567899999999999988765
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-26 Score=232.17 Aligned_cols=293 Identities=16% Similarity=0.188 Sum_probs=225.2
Q ss_pred eeeecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeee
Q 005352 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLT 286 (701)
Q Consensus 207 ~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~ 286 (701)
.++.+++..+++|+-|.+|+.||+..-...+......+ ......|.++.|++.|..|+..+....++|+|-...+.+.
T Consensus 173 l~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~--P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e 250 (641)
T KOG0772|consen 173 LAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQ--PCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVE 250 (641)
T ss_pred eeecCCCceeeeccccceEEEEecccccccchhhhccC--cccccccceeeecCCCCeEEEEecCcceeEEccCCceeee
Confidence 45667788999999999999999977655544433222 2344569999999999988888777899999965544332
Q ss_pred eecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC
Q 005352 287 EVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN 366 (701)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~ 366 (701)
..+... .+ .-+..-+||...++|.+|+|..
T Consensus 251 ~~KGDQ--------------------------------------YI------------~Dm~nTKGHia~lt~g~whP~~ 280 (641)
T KOG0772|consen 251 FSKGDQ--------------------------------------YI------------RDMYNTKGHIAELTCGCWHPDN 280 (641)
T ss_pred eeccch--------------------------------------hh------------hhhhccCCceeeeeccccccCc
Confidence 221110 00 1233457999999999999987
Q ss_pred --eEEEEECCCcEEEEECCCCe-eeeeec------CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEE----EEe
Q 005352 367 --YLLSASIDKTVRLWRVGNDH-CLRVFP------HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV----DWV 433 (701)
Q Consensus 367 --~l~s~s~dg~I~iWd~~~~~-~~~~~~------h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~----~~~ 433 (701)
.|+|++.||+++|||+...+ .+..+. ..-+++.++|+| ++++||+|+.||.|.+|+..+..+. ...
T Consensus 281 k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nr-dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~ 359 (641)
T KOG0772|consen 281 KEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNR-DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKD 359 (641)
T ss_pred ccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCC-CcchhhhcccCCceeeeecCCcccccceEeee
Confidence 99999999999999997653 444454 345799999999 9999999999999999998654322 122
Q ss_pred cCCC--cEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEEC----
Q 005352 434 DIRQ--IVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCA---- 507 (701)
Q Consensus 434 ~~~~--~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~---- 507 (701)
.|.. .|++|.|+++|++|++-+.|+++++||++..+..+..... .....+-+.++|+| +..+|++|..
T Consensus 360 AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tg-----L~t~~~~tdc~FSP-d~kli~TGtS~~~~ 433 (641)
T KOG0772|consen 360 AHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTG-----LPTPFPGTDCCFSP-DDKLILTGTSAPNG 433 (641)
T ss_pred ccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcC-----CCccCCCCccccCC-CceEEEecccccCC
Confidence 3444 7999999999999999999999999999986644322111 12234567899999 7788888865
Q ss_pred --CCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 005352 508 --DSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNC 558 (701)
Q Consensus 508 --dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~ 558 (701)
.+.+.+||..+...+++..-....|..+.|+|.-+.|+.|+.||.+++|==
T Consensus 434 ~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyYd 486 (641)
T KOG0772|consen 434 MTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYYD 486 (641)
T ss_pred CCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEEEC
Confidence 578999999988888887767889999999999999999999999999843
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-26 Score=217.51 Aligned_cols=295 Identities=19% Similarity=0.278 Sum_probs=218.8
Q ss_pred eEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCC------------------eeeeee-cCCCCeEEEEEeeCC
Q 005352 347 LHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGND------------------HCLRVF-PHSNYVTCVHFNPVD 406 (701)
Q Consensus 347 ~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~------------------~~~~~~-~h~~~V~~l~f~p~~ 406 (701)
...+..|+.++.+.+|+++| ++++|+.|..|+|.|++.. -.++++ .|...|+++.|+| .
T Consensus 105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP-r 183 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP-R 183 (430)
T ss_pred eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc-h
Confidence 44567899999999999999 9999999999999998611 123333 3999999999999 9
Q ss_pred CCEEEEEEcCCcEEEEeCCCCcEE---EEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccC
Q 005352 407 DNYFISGSIDGKVRIWAVLSCHVV---DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKK 483 (701)
Q Consensus 407 ~~~l~sgs~dg~v~iwd~~~~~~~---~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~ 483 (701)
..+|++|+.|++|++||+...... +.+....+|.+++|+|.|.+|++|+.-..+++||+++.++.... ....
T Consensus 184 e~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsa-----nPd~ 258 (430)
T KOG0640|consen 184 ETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSA-----NPDD 258 (430)
T ss_pred hheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeec-----Cccc
Confidence 999999999999999999765433 45566789999999999999999999999999999988765432 2345
Q ss_pred CCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccce--eeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 005352 484 APCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIG--KYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGH 561 (701)
Q Consensus 484 ~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~--~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~ 561 (701)
.|...|+++.+++ .+.+.++++.||.|+|||.-...+ .+........|.++.|+.+|+||++.+.|..+++|.+.++
T Consensus 259 qht~ai~~V~Ys~-t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~ 337 (430)
T KOG0640|consen 259 QHTGAITQVRYSS-TGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTG 337 (430)
T ss_pred ccccceeEEEecC-CccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCC
Confidence 6778999999999 799999999999999999864333 3333324567999999999999999999999999999998
Q ss_pred CCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCCcccCCCCc
Q 005352 562 EEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEE 641 (701)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~ 641 (701)
.... .+... |..- .........+.+ .....+.|+. ....+..|+..
T Consensus 338 R~l~--------~YtGA-----------g~tg--rq~~rtqAvFNh--tEdyVl~pDE-----------as~slcsWdaR 383 (430)
T KOG0640|consen 338 RMLK--------EYTGA-----------GTTG--RQKHRTQAVFNH--TEDYVLFPDE-----------ASNSLCSWDAR 383 (430)
T ss_pred ceEE--------EEecC-----------Cccc--chhhhhhhhhcC--ccceEEcccc-----------ccCceeecccc
Confidence 7321 11100 0000 000000001111 1222334541 23445678887
Q ss_pred cCCCCccccccccchhhhhhhhhcccccccccCCCccEEEEecCCCeEeEEe
Q 005352 642 KLPALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFL 693 (701)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivTgg~DG~Irvw~ 693 (701)
....+.-+... |++.|..+..++. +..++|++.|-++|.|-
T Consensus 384 tadr~~l~slg----------Hn~a~R~i~HSP~-~p~FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 384 TADRVALLSLG----------HNGAVRWIVHSPV-EPAFMTCSDDFRARFWY 424 (430)
T ss_pred chhhhhhcccC----------CCCCceEEEeCCC-CCceeeecccceeeeee
Confidence 76654333222 1567887777777 99999999999999994
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.3e-26 Score=247.68 Aligned_cols=303 Identities=19% Similarity=0.303 Sum_probs=226.8
Q ss_pred eeeecCcccccccc--ccceEEEEEccCccchhhh-----cccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEe
Q 005352 207 ERVRLNEEDAMFCS--KVQRVKVYHCKKRSKELSA-----LYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQV 279 (701)
Q Consensus 207 ~~~~~~~~~~~~~~--~d~~v~vw~~~~~~~~~~~-----~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~ 279 (701)
.++++++..+++|+ .|+.++||..+.-..+... .........|.+.|.|+.|+|||+|||+|+.|+.|.||..
T Consensus 19 Idv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~ 98 (942)
T KOG0973|consen 19 IDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWER 98 (942)
T ss_pred EEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeee
Confidence 35566777788888 8888999987532211111 1112245679999999999999999999999999999997
Q ss_pred ecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEE
Q 005352 280 VEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILD 359 (701)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~ 359 (701)
.... .... ..+.++...+. .-+.+..+.+|...|.+
T Consensus 99 ~~~~-~~~~-----------------------fgs~g~~~~vE--------------------~wk~~~~l~~H~~DV~D 134 (942)
T KOG0973|consen 99 AEIG-SGTV-----------------------FGSTGGAKNVE--------------------SWKVVSILRGHDSDVLD 134 (942)
T ss_pred cccC-Cccc-----------------------ccccccccccc--------------------eeeEEEEEecCCCccce
Confidence 6410 0000 00000000000 01556788999999999
Q ss_pred EEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEec---
Q 005352 360 LSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVD--- 434 (701)
Q Consensus 360 l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~--- 434 (701)
++|+|++ +|++++.|++|.|||..+.+++..+. |.+.|-.+.|.| -++||++-+.|++|+||++.+-.+.+.+.
T Consensus 135 v~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP-~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf 213 (942)
T KOG0973|consen 135 VNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDP-IGKYFASQSDDRTLKVWRTSDWGIEKSITKPF 213 (942)
T ss_pred eccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECC-ccCeeeeecCCceEEEEEcccceeeEeeccch
Confidence 9999999 99999999999999999999999887 999999999999 99999999999999999987755554332
Q ss_pred ----CCCcEEEEEEeeCCCeEEEEec----CCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecC----C----
Q 005352 435 ----IRQIVTAVCYRPDGQGGIVGSM----MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQ----D---- 498 (701)
Q Consensus 435 ----~~~~i~~i~~sp~g~~l~~gs~----dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~----~---- 498 (701)
....+..+.|+|||++|++... -..+.|.+-.+.+. .....+|..++.++.|+|. .
T Consensus 214 ~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~--------~~~LvGH~~p~evvrFnP~lfe~~~~ng 285 (942)
T KOG0973|consen 214 EESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKV--------DKDLVGHSAPVEVVRFNPKLFERNNKNG 285 (942)
T ss_pred hhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCcee--------eeeeecCCCceEEEEeChHHhccccccC
Confidence 2335788999999999998643 23355655443322 1124456789999999982 1
Q ss_pred ----CC----EEEEEECCCcEEEEeCCccceeeeccc-CCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 499 ----SS----KVMVSCADSQVRILQGPNVIGKYKGLR-RSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 499 ----~~----~l~~~s~dg~I~iwd~~~~~~~~~~~~-~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
+. .+++|+.|+.|.||........+..+. ....|..++|+|||..|+.+|.||+|.+..++..+
T Consensus 286 ~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 286 TSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred CccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence 11 678899999999999876665555433 56789999999999999999999999999987644
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-25 Score=211.21 Aligned_cols=271 Identities=14% Similarity=0.227 Sum_probs=217.4
Q ss_pred cceeeecCc--cccc-cccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeec
Q 005352 205 EGERVRLNE--EDAM-FCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVE 281 (701)
Q Consensus 205 ~~~~~~~~~--~~~~-~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~ 281 (701)
.+.++.+++ ..++ .++-|++||+|++..... +.....+.|.++|.+++|+.||..+++|+.|+.+++||+.+
T Consensus 29 sIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~-----~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S 103 (347)
T KOG0647|consen 29 SISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQ-----LVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLAS 103 (347)
T ss_pred chheeEeccccCceEEecccCCceEEEEEecCCc-----ccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccC
Confidence 344444443 4444 689999999999865422 22234566999999999999999999999999999999998
Q ss_pred CeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEE
Q 005352 282 DERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLS 361 (701)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~ 361 (701)
++ +..+..|.++|..+.
T Consensus 104 ~Q---------------------------------------------------------------~~~v~~Hd~pvkt~~ 120 (347)
T KOG0647|consen 104 GQ---------------------------------------------------------------VSQVAAHDAPVKTCH 120 (347)
T ss_pred CC---------------------------------------------------------------eeeeeecccceeEEE
Confidence 75 234456999999999
Q ss_pred EecCC---eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEE---EecC
Q 005352 362 WSKNN---YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD---WVDI 435 (701)
Q Consensus 362 ~s~~~---~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~---~~~~ 435 (701)
|-+.. .|+|||.|++|+.||.+...++.++..+..|+++.. ...+++.+..+..|.+|+++++.... ....
T Consensus 121 wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv---~~pm~vVata~r~i~vynL~n~~te~k~~~SpL 197 (347)
T KOG0647|consen 121 WVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADV---LYPMAVVATAERHIAVYNLENPPTEFKRIESPL 197 (347)
T ss_pred EecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhc---cCceeEEEecCCcEEEEEcCCCcchhhhhcCcc
Confidence 98764 899999999999999999999999999999999886 34688888899999999998765431 2234
Q ss_pred CCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccC---CCCCCeeEEEEecCCCCEEEEEECCCcEE
Q 005352 436 RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKK---APCKRITGFQFLPQDSSKVMVSCADSQVR 512 (701)
Q Consensus 436 ~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~---~~~~~i~~l~~~p~~~~~l~~~s~dg~I~ 512 (701)
+-.+.+|+..++....+.|+.+|.+.+..+..........+..+.... .....|++++|+| ....|++.+.||+..
T Consensus 198 k~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP-~hgtlvTaGsDGtf~ 276 (347)
T KOG0647|consen 198 KWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHP-VHGTLVTAGSDGTFS 276 (347)
T ss_pred cceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeec-ccceEEEecCCceEE
Confidence 567899999999999999999999999999886444444455544322 1246789999999 688999999999999
Q ss_pred EEeCCccceeeecccCCCCeEEEEEecCCCEEEEE
Q 005352 513 ILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSA 547 (701)
Q Consensus 513 iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sg 547 (701)
+||.....+......+..+|++++|+.+|.+++-+
T Consensus 277 FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 277 FWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred EecchhhhhhhccCcCCCccceeEecCCCCEEEEE
Confidence 99987665555556689999999999999988765
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-25 Score=212.86 Aligned_cols=269 Identities=21% Similarity=0.305 Sum_probs=216.2
Q ss_pred ccccccceEEEEEccCccch-----hhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCC
Q 005352 217 MFCSKVQRVKVYHCKKRSKE-----LSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIP 291 (701)
Q Consensus 217 ~~~~~d~~v~vw~~~~~~~~-----~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~ 291 (701)
++|+....|.=+.++...+. ...+...-.+++|.++|++++. +|.|+||||.|-+|+|||+....
T Consensus 5 IvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~-------- 74 (362)
T KOG0294|consen 5 IVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRK-------- 74 (362)
T ss_pred EEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchh--------
Confidence 44555555555555433211 1111222346889999999999 58999999999999999997753
Q ss_pred CCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC---eE
Q 005352 292 EIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN---YL 368 (701)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~---~l 368 (701)
.+..+..|.+.|+++.|.+.- .|
T Consensus 75 ------------------------------------------------------qlg~ll~HagsitaL~F~~~~S~shL 100 (362)
T KOG0294|consen 75 ------------------------------------------------------QLGILLSHAGSITALKFYPPLSKSHL 100 (362)
T ss_pred ------------------------------------------------------hhcceeccccceEEEEecCCcchhhe
Confidence 234456699999999999875 99
Q ss_pred EEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeC
Q 005352 369 LSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPD 447 (701)
Q Consensus 369 ~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~ 447 (701)
++|+.||.|.+|+.....++..++ |.+.|+.++.+| .+++-++.+.|+.++.||+-.++.-.........+.+.|+|.
T Consensus 101 lS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHP-S~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~ 179 (362)
T KOG0294|consen 101 LSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHP-SGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQ 179 (362)
T ss_pred eeecCCCcEEEEEcCCeEEeeeecccccccceeEecC-CCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCC
Confidence 999999999999999999999998 999999999999 999999999999999999999988777777777788999999
Q ss_pred CCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeeccc
Q 005352 448 GQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLR 527 (701)
Q Consensus 448 g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~ 527 (701)
|.+++++.. ..|-+|.+.+.++..... ...++.++.|. ++..+++|..|+.|.+||............
T Consensus 180 Gd~F~v~~~-~~i~i~q~d~A~v~~~i~---------~~~r~l~~~~l--~~~~L~vG~d~~~i~~~D~ds~~~~~~~~A 247 (362)
T KOG0294|consen 180 GDHFVVSGR-NKIDIYQLDNASVFREIE---------NPKRILCATFL--DGSELLVGGDNEWISLKDTDSDTPLTEFLA 247 (362)
T ss_pred CCEEEEEec-cEEEEEecccHhHhhhhh---------ccccceeeeec--CCceEEEecCCceEEEeccCCCccceeeec
Confidence 999988876 458899988765432211 11446666665 578999999999999999987777777777
Q ss_pred CCCCeEEEEE--ecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 528 RSGNQLSACF--TSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 528 ~~~~v~~l~~--s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
|...|-++.+ .|++.||+|+|.||.|+|||++...
T Consensus 248 H~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 248 HENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMET 284 (362)
T ss_pred chhheeeeEEEecCCceEEEEeccCceEEEEEccccc
Confidence 9999999884 4678999999999999999998774
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.9e-27 Score=216.23 Aligned_cols=280 Identities=16% Similarity=0.217 Sum_probs=226.2
Q ss_pred cccCcceeeec-----CccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEE
Q 005352 201 DKQGEGERVRL-----NEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVR 275 (701)
Q Consensus 201 ~~~~~~~~~~~-----~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~ 275 (701)
.|...+..+.+ .+-.++.++.|+.-.+.+-+.... . -++.||++.|++.....+....|+++.|-+.+
T Consensus 12 ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdw--i-----gtfeghkgavw~~~l~~na~~aasaaadftak 84 (334)
T KOG0278|consen 12 GHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDW--I-----GTFEGHKGAVWSATLNKNATRAASAAADFTAK 84 (334)
T ss_pred CCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCc--E-----EeeeccCcceeeeecCchhhhhhhhcccchhh
Confidence 34444544443 344566677777766664332211 1 25778999999999999999999999999999
Q ss_pred EEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCcc
Q 005352 276 LWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSG 355 (701)
Q Consensus 276 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 355 (701)
|||..++..+..+ .|+.
T Consensus 85 vw~a~tgdelhsf---------------------------------------------------------------~hkh 101 (334)
T KOG0278|consen 85 VWDAVTGDELHSF---------------------------------------------------------------EHKH 101 (334)
T ss_pred hhhhhhhhhhhhh---------------------------------------------------------------hhhh
Confidence 9999887544333 2778
Q ss_pred CeEEEEEecCC-eEEEEECCCcEEEEECCCCe-eeeee-cCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEE
Q 005352 356 EILDLSWSKNN-YLLSASIDKTVRLWRVGNDH-CLRVF-PHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDW 432 (701)
Q Consensus 356 ~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~-~~~~~-~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~ 432 (701)
-|..++|+.+. +|++|+.++.++|+|++..+ +...+ .|.+.|..+.|.. .++.|++...|++||+||.+++..++.
T Consensus 102 ivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~-eD~~iLSSadd~tVRLWD~rTgt~v~s 180 (334)
T KOG0278|consen 102 IVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCH-EDKCILSSADDKTVRLWDHRTGTEVQS 180 (334)
T ss_pred eeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEec-cCceEEeeccCCceEEEEeccCcEEEE
Confidence 89999999998 99999999999999998754 23333 4999999999998 888999999999999999999999999
Q ss_pred ecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEE
Q 005352 433 VDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVR 512 (701)
Q Consensus 433 ~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~ 512 (701)
+..+.+|+++.++++|++|.++. .+.|.+||..+-.+.... .....|.+..++| +...+++|+.|..++
T Consensus 181 L~~~s~VtSlEvs~dG~ilTia~-gssV~Fwdaksf~~lKs~---------k~P~nV~SASL~P-~k~~fVaGged~~~~ 249 (334)
T KOG0278|consen 181 LEFNSPVTSLEVSQDGRILTIAY-GSSVKFWDAKSFGLLKSY---------KMPCNVESASLHP-KKEFFVAGGEDFKVY 249 (334)
T ss_pred EecCCCCcceeeccCCCEEEEec-CceeEEeccccccceeec---------cCccccccccccC-CCceEEecCcceEEE
Confidence 99999999999999998776654 578999999876554322 1235688889999 569999999999999
Q ss_pred EEeCCccceeee-cccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 513 ILQGPNVIGKYK-GLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 513 iwd~~~~~~~~~-~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
.||..+....-. ..+|.++|.++.|+|+|...++||+||+|+||....++
T Consensus 250 kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 250 KFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred EEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence 999886655444 25589999999999999999999999999999987766
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-24 Score=207.40 Aligned_cols=292 Identities=20% Similarity=0.269 Sum_probs=222.7
Q ss_pred CceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeE
Q 005352 243 GQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (701)
Q Consensus 243 ~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (701)
.+.++.-.+.|.+|.|+++|.+|++++.|.+|+|||..+++++..+..+.-.+.++.|.......+..-.-....+..+.
T Consensus 7 ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLs 86 (311)
T KOG1446|consen 7 AKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLS 86 (311)
T ss_pred ccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEE
Confidence 34455567899999999999999999999999999999999998888776666666665544332221111111111111
Q ss_pred EeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEE
Q 005352 323 SLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVH 401 (701)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~ 401 (701)
.. .++.++.|.||...|..|+.+|-+ .+++++.|++|++||++..+|...+..... ..++
T Consensus 87 l~------------------dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~-pi~A 147 (311)
T KOG1446|consen 87 LH------------------DNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR-PIAA 147 (311)
T ss_pred ee------------------cCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC-ccee
Confidence 10 126788999999999999999988 999999999999999999998887764443 4578
Q ss_pred EeeCCCCEEEEEEcCCcEEEEeCCCCc---EEEE--e-cCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeee
Q 005352 402 FNPVDDNYFISGSIDGKVRIWAVLSCH---VVDW--V-DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAE 475 (701)
Q Consensus 402 f~p~~~~~l~sgs~dg~v~iwd~~~~~---~~~~--~-~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~ 475 (701)
|.| .|-+||++...+.|++||++.-. ...+ . ......+.+.|+|||+.++.++..+.+++.|.-++..+....
T Consensus 148 fDp-~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs 226 (311)
T KOG1446|consen 148 FDP-EGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFS 226 (311)
T ss_pred ECC-CCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEe
Confidence 999 99999999888899999998642 1111 1 235678999999999999999999999999999888654433
Q ss_pred EEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeeccc-CCCCeEEEEEecCCCEEEEEeCCCcEE
Q 005352 476 ICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLR-RSGNQLSACFTSDGKHIVSAGEDSNVY 554 (701)
Q Consensus 476 ~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~-~~~~v~~l~~s~dg~~l~sgs~Dg~I~ 554 (701)
..... . .--....|.| +++++++|+.||+|.+|++.+........+ +..++.++.|+|...+++|++ ..+.
T Consensus 227 ~~~~~----~-~~~~~a~ftP-ds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~--s~l~ 298 (311)
T KOG1446|consen 227 GYPNA----G-NLPLSATFTP-DSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSAS--SNLV 298 (311)
T ss_pred eccCC----C-CcceeEEECC-CCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecC--ceEE
Confidence 22211 1 1125678889 899999999999999999998777766655 688999999999987777764 5788
Q ss_pred EEeCCCCC
Q 005352 555 MWNCIGHE 562 (701)
Q Consensus 555 iWd~~~~~ 562 (701)
+|=....+
T Consensus 299 fw~p~~~~ 306 (311)
T KOG1446|consen 299 FWLPDEDA 306 (311)
T ss_pred EEeccccc
Confidence 88766444
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.4e-25 Score=238.19 Aligned_cols=251 Identities=16% Similarity=0.213 Sum_probs=187.5
Q ss_pred eeccCCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEE
Q 005352 245 EIQAHDGSILTMKFSP-DGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (701)
Q Consensus 245 ~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (701)
.+.+|.+.|++++|+| ++++||+|+.|++|+|||+.++.....
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~------------------------------------ 113 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQN------------------------------------ 113 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccc------------------------------------
Confidence 5789999999999999 889999999999999999976431100
Q ss_pred eeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC--eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEE
Q 005352 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCV 400 (701)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~--~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l 400 (701)
...++..+.+|...|.+++|+|++ +|++++.|++|+|||+.+++.+..+. |...|.++
T Consensus 114 -------------------~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sl 174 (493)
T PTZ00421 114 -------------------ISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSL 174 (493)
T ss_pred -------------------cCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEE
Confidence 014567788999999999999975 89999999999999999999888886 88999999
Q ss_pred EEeeCCCCEEEEEEcCCcEEEEeCCCCcEEE-EecCCCc-EEEEEEeeCCCeEEEEe----cCCcEEEEECCCCeeeeee
Q 005352 401 HFNPVDDNYFISGSIDGKVRIWAVLSCHVVD-WVDIRQI-VTAVCYRPDGQGGIVGS----MMGDCRFYNVSDNHLELDA 474 (701)
Q Consensus 401 ~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~-~~~~~~~-i~~i~~sp~g~~l~~gs----~dg~v~i~d~~~~~~~~~~ 474 (701)
+|+| ++.+|++++.|++|+|||+++++.+. ...|.+. +..+.|.+++..+++++ .|+.|++||+++......
T Consensus 175 a~sp-dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~- 252 (493)
T PTZ00421 175 EWNL-DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYS- 252 (493)
T ss_pred EEEC-CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCcee-
Confidence 9999 99999999999999999999988764 3445543 45678899888777654 478999999986543211
Q ss_pred eEEeecccCCCCCCeeEEEEecCCCCEEEEEE-CCCcEEEEeCCccceeeec-ccCCCCeEEEEEecCCCEEEEEeCCCc
Q 005352 475 EICVHSKKKAPCKRITGFQFLPQDSSKVMVSC-ADSQVRILQGPNVIGKYKG-LRRSGNQLSACFTSDGKHIVSAGEDSN 552 (701)
Q Consensus 475 ~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s-~dg~I~iwd~~~~~~~~~~-~~~~~~v~~l~~s~dg~~l~sgs~Dg~ 552 (701)
.. .......+....|++ ++.+|++++ .|+.|++||+.+....+.. ..+..++..++|.|.-..=+- .--.
T Consensus 253 ---~~--~~d~~~~~~~~~~d~-d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~~~dv~--~~Ei 324 (493)
T PTZ00421 253 ---TV--DLDQSSALFIPFFDE-DTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKWSLDTR--KCEI 324 (493)
T ss_pred ---Ee--ccCCCCceEEEEEcC-CCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccccccccc--ceee
Confidence 10 111223455556777 677787777 5999999999865544332 224556788888885321111 1123
Q ss_pred EEEEeCCC
Q 005352 553 VYMWNCIG 560 (701)
Q Consensus 553 I~iWd~~~ 560 (701)
.++|.+..
T Consensus 325 ~r~~~l~~ 332 (493)
T PTZ00421 325 ARFYALTY 332 (493)
T ss_pred eEEEEecC
Confidence 46666643
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-26 Score=222.33 Aligned_cols=284 Identities=17% Similarity=0.302 Sum_probs=226.5
Q ss_pred ceeeecccCcceeeecCccc---cccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCC
Q 005352 196 LACVVDKQGEGERVRLNEED---AMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDG 272 (701)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~---~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg 272 (701)
++.+..|...+.++.-.+.. +++|+.||.|+||++..+ .....+++|.|.|..|++.. ..++|+|.|.
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR-------~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDK 129 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQR-------ECIRTFKAHEGLVRGICVTQ--TSFFTVGDDK 129 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhh-------hhhheeecccCceeeEEecc--cceEEecCCc
Confidence 33444677777777766654 567999999999976533 23356889999999999987 6799999999
Q ss_pred cEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcC
Q 005352 273 VVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHG 352 (701)
Q Consensus 273 ~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (701)
+|+.|.+... +.+++.+
T Consensus 130 tvK~wk~~~~---------------------------------------------------------------p~~tilg 146 (433)
T KOG0268|consen 130 TVKQWKIDGP---------------------------------------------------------------PLHTILG 146 (433)
T ss_pred ceeeeeccCC---------------------------------------------------------------cceeeec
Confidence 9999997542 2222322
Q ss_pred CccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEE
Q 005352 353 HSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV 430 (701)
Q Consensus 353 h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~ 430 (701)
...++.|.-+..+ .++|++.+ |-|||.....++..+. ....|.++.|+|....+|++++.|+.|.+||++...++
T Consensus 147 -~s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl 223 (433)
T KOG0268|consen 147 -KSVYLGIDHHRKNSVFATCGEQ--IDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPL 223 (433)
T ss_pred -cccccccccccccccccccCce--eeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCcc
Confidence 2345566655555 78888764 9999999999999988 66789999999988888999999999999999999988
Q ss_pred EEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCc
Q 005352 431 DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQ 510 (701)
Q Consensus 431 ~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~ 510 (701)
......-..+.|+|+|.+-.+++|+.|..++.||++..+.. ......|...|.++.|+| .|+-+++|+.|.+
T Consensus 224 ~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p-------~~v~~dhvsAV~dVdfsp-tG~EfvsgsyDks 295 (433)
T KOG0268|consen 224 KKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRP-------LNVHKDHVSAVMDVDFSP-TGQEFVSGSYDKS 295 (433)
T ss_pred ceeeeeccccceecCccccceeeccccccceehhhhhhccc-------chhhcccceeEEEeccCC-Ccchhccccccce
Confidence 77777777889999999889999999999999999875432 223567888999999999 7999999999999
Q ss_pred EEEEeCCccceeeec-ccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 511 VRILQGPNVIGKYKG-LRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 511 I~iwd~~~~~~~~~~-~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
|+||..+.....-.- ..-...|.++.||.|.+||++||.|+.|++|.-...+
T Consensus 296 IRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Ase 348 (433)
T KOG0268|consen 296 IRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASE 348 (433)
T ss_pred EEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhh
Confidence 999998754322111 1134679999999999999999999999999876544
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.1e-27 Score=230.64 Aligned_cols=245 Identities=20% Similarity=0.424 Sum_probs=207.8
Q ss_pred eeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEe
Q 005352 245 EIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSL 324 (701)
Q Consensus 245 ~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (701)
.+.+|.+.|..+.|-++...|+|||.|..|++|++...+.
T Consensus 170 ~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~---------------------------------------- 209 (459)
T KOG0288|consen 170 VLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKS---------------------------------------- 209 (459)
T ss_pred hhhccccccceeEEccCcchhhhcchhhhhhhhhcccchh----------------------------------------
Confidence 4678999999999999988999999999999999866531
Q ss_pred eecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEE
Q 005352 325 RRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHF 402 (701)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f 402 (701)
..+.++.|..+.|+.+.|.+++ ++++++.|+.+++|++.+.+...++. |.+.|+++.|
T Consensus 210 --------------------~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~ 269 (459)
T KOG0288|consen 210 --------------------ELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKF 269 (459)
T ss_pred --------------------hhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehh
Confidence 2345667788899999999999 99999999999999999999988887 9999999999
Q ss_pred eeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeeccc
Q 005352 403 NPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKK 482 (701)
Q Consensus 403 ~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~ 482 (701)
.. ....+++|+.|.+|++||+....+....-....+..|+.+ ...+++|..|++|++||++........
T Consensus 270 ~~-~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv-------- 338 (459)
T KOG0288|consen 270 KL-SHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSV-------- 338 (459)
T ss_pred hc-cccceeeccccchhhhhhhhhhheeccccccccccceEec--ceeeeecccccceEEEeccCCceeeEe--------
Confidence 87 5556999999999999999998888776666777777776 557889999999999999988765432
Q ss_pred CCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccc--eeeec--ccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 005352 483 KAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVI--GKYKG--LRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNC 558 (701)
Q Consensus 483 ~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~--~~~~~--~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~ 558 (701)
...+.|+++..++ ++..+++++.|.++.+.|+++.. ..|.. .......+.+.|||++.|+++||.||.|+||++
T Consensus 339 -~~gg~vtSl~ls~-~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v 416 (459)
T KOG0288|consen 339 -PLGGRVTSLDLSM-DGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSV 416 (459)
T ss_pred -ecCcceeeEeecc-CCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEc
Confidence 2235799999999 78888888999999999998543 33322 224455899999999999999999999999999
Q ss_pred CCCC
Q 005352 559 IGHE 562 (701)
Q Consensus 559 ~~~~ 562 (701)
.+++
T Consensus 417 ~tgK 420 (459)
T KOG0288|consen 417 FTGK 420 (459)
T ss_pred cCce
Confidence 9987
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-25 Score=241.45 Aligned_cols=275 Identities=18% Similarity=0.306 Sum_probs=228.1
Q ss_pred cCcceeeecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecC
Q 005352 203 QGEGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVED 282 (701)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~ 282 (701)
...+.+..+.++.+++++.++++++|+..... .....+.||.+.|++++|..-+.+|++|+.|.+++|||..++
T Consensus 208 ~~~~~~~q~~~~~~~~~s~~~tl~~~~~~~~~------~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg 281 (537)
T KOG0274|consen 208 DHVVLCLQLHDGFFKSGSDDSTLHLWDLNNGY------LILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTG 281 (537)
T ss_pred cchhhhheeecCeEEecCCCceeEEeecccce------EEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCC
Confidence 44556667778899999999999999854332 222347899999999999877889999999999999999888
Q ss_pred eeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEE
Q 005352 283 ERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSW 362 (701)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~ 362 (701)
++ .+.+.+|...|.++..
T Consensus 282 ~C--------------------------------------------------------------~~~l~gh~stv~~~~~ 299 (537)
T KOG0274|consen 282 EC--------------------------------------------------------------THSLQGHTSSVRCLTI 299 (537)
T ss_pred cE--------------------------------------------------------------EEEecCCCceEEEEEc
Confidence 53 4667899999999875
Q ss_pred ecCCeEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEE-EEecCCCcEE
Q 005352 363 SKNNYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVT 440 (701)
Q Consensus 363 s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~-~~~~~~~~i~ 440 (701)
.+. ++++|+.|.+|++|++.++.++.++. |..+|+++..+ +.++++|+.|++|++||+.+++++ ...+|...|.
T Consensus 300 ~~~-~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~---~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~ 375 (537)
T KOG0274|consen 300 DPF-LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD---EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVY 375 (537)
T ss_pred cCc-eEeeccCCceEEEEeccCcceEEEeccccccEEEEEec---CCEEEEEecCceEEEEEhhhceeeeeecCCcceEE
Confidence 422 78889999999999999999999999 99999999984 789999999999999999999988 4567999999
Q ss_pred EEEEeeCCCeEEEEecCCcEEEEECCCC-eeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCcc
Q 005352 441 AVCYRPDGQGGIVGSMMGDCRFYNVSDN-HLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV 519 (701)
Q Consensus 441 ~i~~sp~g~~l~~gs~dg~v~i~d~~~~-~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~ 519 (701)
++.+.+. ..++.|+.|+.|++||+++. ++... ...|..-+.++.+ .+++|++++.|+.|++||..+.
T Consensus 376 sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~t--------l~~h~~~v~~l~~---~~~~Lvs~~aD~~Ik~WD~~~~ 443 (537)
T KOG0274|consen 376 SLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHT--------LQGHTSLVSSLLL---RDNFLVSSSADGTIKLWDAEEG 443 (537)
T ss_pred EEEecCc-ceEEeeeeccceEeecCCchhhhhhh--------hcCCccccccccc---ccceeEeccccccEEEeecccC
Confidence 9988765 89999999999999999987 43321 2334455555555 4689999999999999999877
Q ss_pred ceeeeccc-CCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCC
Q 005352 520 IGKYKGLR-RSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEE 563 (701)
Q Consensus 520 ~~~~~~~~-~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~ 563 (701)
........ |...|..+++. ...+++++.||.+++||+.+++.
T Consensus 444 ~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~ 486 (537)
T KOG0274|consen 444 ECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTL 486 (537)
T ss_pred ceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCch
Confidence 66665554 56888888876 56799999999999999999884
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.3e-25 Score=205.71 Aligned_cols=279 Identities=16% Similarity=0.208 Sum_probs=210.5
Q ss_pred cccCcceeeecC--ccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEE
Q 005352 201 DKQGEGERVRLN--EEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQ 278 (701)
Q Consensus 201 ~~~~~~~~~~~~--~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd 278 (701)
.|......+.++ ++.+.++++|..+.||-.... +. .-++.||++.|+|+....+.++|+||+.|.++++||
T Consensus 8 GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nG--er-----lGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWD 80 (327)
T KOG0643|consen 8 GHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNG--ER-----LGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWD 80 (327)
T ss_pred cCccccceEEecCCCcEEEEecCCCCceEEEecCC--ce-----eeeecCCCceEEEEEecCCcceeeeccccceeEEEE
Confidence 355555555554 566777999999999964222 11 135778999999999999999999999999999999
Q ss_pred eecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeE
Q 005352 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEIL 358 (701)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~ 358 (701)
+.+++.+..++ -..+|.
T Consensus 81 v~tGk~la~~k---------------------------------------------------------------~~~~Vk 97 (327)
T KOG0643|consen 81 VETGKQLATWK---------------------------------------------------------------TNSPVK 97 (327)
T ss_pred cCCCcEEEEee---------------------------------------------------------------cCCeeE
Confidence 99998765543 235788
Q ss_pred EEEEecCC-eEEEEEC-----CCcEEEEECC-------CCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeC
Q 005352 359 DLSWSKNN-YLLSASI-----DKTVRLWRVG-------NDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAV 424 (701)
Q Consensus 359 ~l~~s~~~-~l~s~s~-----dg~I~iWd~~-------~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~ 424 (701)
.+.|+.+| +++.+.. .+.|.++|++ ..++...+. +.+.++.+-|.| -+.+|++|..||.|.+||+
T Consensus 98 ~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~-l~~~ii~Ghe~G~is~~da 176 (327)
T KOG0643|consen 98 RVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGP-LGETIIAGHEDGSISIYDA 176 (327)
T ss_pred EEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecc-cCCEEEEecCCCcEEEEEc
Confidence 89999999 4444433 3579999998 445455444 778999999999 9999999999999999999
Q ss_pred CCCcEE-E-EecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEE
Q 005352 425 LSCHVV-D-WVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKV 502 (701)
Q Consensus 425 ~~~~~~-~-~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l 502 (701)
++++.. . ...|...|+.++++|+..++++++.|.+-++||+.+-..+.... ...++++.+++|. ..++
T Consensus 177 ~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~---------te~PvN~aaisP~-~d~V 246 (327)
T KOG0643|consen 177 RTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT---------TERPVNTAAISPL-LDHV 246 (327)
T ss_pred ccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEee---------ecccccceecccc-cceE
Confidence 998544 3 34678899999999999999999999999999999866543322 2357889999994 4555
Q ss_pred EEEECCCcEEEEeCCc--------------cceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 005352 503 MVSCADSQVRILQGPN--------------VIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIG 560 (701)
Q Consensus 503 ~~~s~dg~I~iwd~~~--------------~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~ 560 (701)
+.|+.....-+=-... ....-...+|-++|++++|+|+|+..++|++||.|++.-++.
T Consensus 247 ilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 247 ILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred EecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 5554432222211111 111112234899999999999999999999999999987654
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-26 Score=216.40 Aligned_cols=309 Identities=17% Similarity=0.286 Sum_probs=230.3
Q ss_pred ccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeecccccee
Q 005352 241 YKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISI 320 (701)
Q Consensus 241 ~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (701)
+....+..|++++.+.+|+|||.++|||+.|..|+|.|++..-..... . .+..+..
T Consensus 103 yEt~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~--~-------em~~~~~--------------- 158 (430)
T KOG0640|consen 103 YETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKP--K-------EMISGDT--------------- 158 (430)
T ss_pred cceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcch--h-------hhccCCc---------------
Confidence 334467789999999999999999999999999999998742100000 0 0000000
Q ss_pred eEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCee---eeeecCCCC
Q 005352 321 LKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHC---LRVFPHSNY 396 (701)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~---~~~~~h~~~ 396 (701)
+.....++++..|.++|+++.|+|.. .|++++.|++|+++|+..... .+.|+...+
T Consensus 159 --------------------qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~ 218 (430)
T KOG0640|consen 159 --------------------QARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEP 218 (430)
T ss_pred --------------------ccCCceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccce
Confidence 00013467889999999999999988 999999999999999976543 344557789
Q ss_pred eEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEE----EecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeee
Q 005352 397 VTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD----WVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLEL 472 (701)
Q Consensus 397 V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~----~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~ 472 (701)
|.++.|+| .+.+|+.|....++++||+.+-++.. ...|.+.|+++.|++.++..++|+.||.|++||--.+++..
T Consensus 219 vrsiSfHP-sGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~ 297 (430)
T KOG0640|consen 219 VRSISFHP-SGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVR 297 (430)
T ss_pred eeeEeecC-CCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHH
Confidence 99999999 99999999999999999999988763 33578899999999999999999999999999987766532
Q ss_pred eeeEEeecccCC-CCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCcc--ceeeecccCC---CCeEEEEEecCCCEEEE
Q 005352 473 DAEICVHSKKKA-PCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV--IGKYKGLRRS---GNQLSACFTSDGKHIVS 546 (701)
Q Consensus 473 ~~~~~~~~~~~~-~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~--~~~~~~~~~~---~~v~~l~~s~dg~~l~s 546 (701)
. .... ....|.+..|.. +++++++.+.|..+++|.+.+. ...+.+.+.. ..-+...|.....|++.
T Consensus 298 t-------~~~AH~gsevcSa~Ftk-n~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~ 369 (430)
T KOG0640|consen 298 T-------IGNAHGGSEVCSAVFTK-NGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLF 369 (430)
T ss_pred H-------HHhhcCCceeeeEEEcc-CCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEc
Confidence 2 1222 335688888888 8999999999999999998754 4455554322 23355678888888887
Q ss_pred EeC-CCcEEEEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCcc
Q 005352 547 AGE-DSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQE 625 (701)
Q Consensus 547 gs~-Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~ 625 (701)
-.+ .+.+.-||-++..... +. ..-+...++.+..+|. ...
T Consensus 370 pDEas~slcsWdaRtadr~~------l~-----------------------------slgHn~a~R~i~HSP~----~p~ 410 (430)
T KOG0640|consen 370 PDEASNSLCSWDARTADRVA------LL-----------------------------SLGHNGAVRWIVHSPV----EPA 410 (430)
T ss_pred cccccCceeeccccchhhhh------hc-----------------------------ccCCCCCceEEEeCCC----CCc
Confidence 653 4678999988765211 00 0111233455556775 678
Q ss_pred ccccCCCCcccCCCCc
Q 005352 626 YVFESFPKGCATWPEE 641 (701)
Q Consensus 626 ~~~~s~d~~~~~W~~~ 641 (701)
|++|+.|...++|-..
T Consensus 411 FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 411 FMTCSDDFRARFWYRR 426 (430)
T ss_pred eeeecccceeeeeeec
Confidence 9999999999999753
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-24 Score=235.72 Aligned_cols=254 Identities=14% Similarity=0.232 Sum_probs=189.8
Q ss_pred ccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccC-CCEEEEEeCCCcEEEEEeecCee-eeeecCCCCCCc
Q 005352 219 CSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPD-GQYLASAGDDGVVRLWQVVEDER-LTEVDIPEIDPS 296 (701)
Q Consensus 219 ~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~I~iWd~~~~~~-~~~~~~~~~~~~ 296 (701)
|+.++.|++|+..+.. ....+.+|.+.|.+++|+|+ +.+||||+.||+|+|||+.++.. ...
T Consensus 50 GG~~gvI~L~~~~r~~-------~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~--------- 113 (568)
T PTZ00420 50 GGLIGAIRLENQMRKP-------PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKE--------- 113 (568)
T ss_pred CCceeEEEeeecCCCc-------eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccc---------
Confidence 5667889999865421 22457899999999999997 78999999999999999976421 000
Q ss_pred eeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC--eEEEEECC
Q 005352 297 CIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLSASID 374 (701)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~--~l~s~s~d 374 (701)
...++..+.+|...|.+++|+|++ .|++++.|
T Consensus 114 ----------------------------------------------i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~D 147 (568)
T PTZ00420 114 ----------------------------------------------IKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFD 147 (568)
T ss_pred ----------------------------------------------cccceEEeecCCCcEEEEEECCCCCeEEEEEeCC
Confidence 003455678899999999999988 56799999
Q ss_pred CcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEE-EecCCCcEEE-----EEEeeCC
Q 005352 375 KTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD-WVDIRQIVTA-----VCYRPDG 448 (701)
Q Consensus 375 g~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~-~~~~~~~i~~-----i~~sp~g 448 (701)
++|+|||+++++.+..+.|...|.+++|+| ++.+|++++.|+.|+|||+++++.+. +..|.+.+.+ ..|++++
T Consensus 148 gtIrIWDl~tg~~~~~i~~~~~V~Slswsp-dG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~ 226 (568)
T PTZ00420 148 SFVNIWDIENEKRAFQINMPKKLSSLKWNI-KGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDD 226 (568)
T ss_pred CeEEEEECCCCcEEEEEecCCcEEEEEECC-CCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCC
Confidence 999999999998888887888999999999 99999999999999999999998774 4456655433 2345888
Q ss_pred CeEEEEecCC----cEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccc-eee
Q 005352 449 QGGIVGSMMG----DCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVI-GKY 523 (701)
Q Consensus 449 ~~l~~gs~dg----~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~-~~~ 523 (701)
.+|++++.++ .|+|||++....... ... .......+. ..+.++++.++++|+.|+.|++|++.... ..+
T Consensus 227 ~~IlTtG~d~~~~R~VkLWDlr~~~~pl~----~~~-ld~~~~~L~-p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l 300 (568)
T PTZ00420 227 NYILSTGFSKNNMREMKLWDLKNTTSALV----TMS-IDNASAPLI-PHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKV 300 (568)
T ss_pred CEEEEEEcCCCCccEEEEEECCCCCCceE----EEE-ecCCccceE-EeeeCCCCCEEEEEECCCeEEEEEccCCcEEee
Confidence 9999987764 799999986322111 101 111112222 23445578899999999999999986432 223
Q ss_pred ecccCCCCeEEEEEecCC
Q 005352 524 KGLRRSGNQLSACFTSDG 541 (701)
Q Consensus 524 ~~~~~~~~v~~l~~s~dg 541 (701)
....+..++.+++|.|..
T Consensus 301 ~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 301 NEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred cccccCCCccceEEcccc
Confidence 333466788899999974
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.9e-25 Score=231.37 Aligned_cols=273 Identities=21% Similarity=0.330 Sum_probs=221.8
Q ss_pred ecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeec
Q 005352 210 RLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVD 289 (701)
Q Consensus 210 ~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~ 289 (701)
..+....+..+-...|.+|+..... ...+ ..-+...|+++.|+++|.+||.|..+|.|.|||..+.+.
T Consensus 184 dWss~n~laValg~~vylW~~~s~~--v~~l-----~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~----- 251 (484)
T KOG0305|consen 184 DWSSANVLAVALGQSVYLWSASSGS--VTEL-----CSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKK----- 251 (484)
T ss_pred hcccCCeEEEEecceEEEEecCCCc--eEEe-----EecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccc-----
Confidence 3444556666777889999864432 1111 122488999999999999999999999999999987643
Q ss_pred CCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcC-CccCeEEEEEecCCeE
Q 005352 290 IPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHG-HSGEILDLSWSKNNYL 368 (701)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~I~~l~~s~~~~l 368 (701)
+..+.+ |...|-+++|. ...+
T Consensus 252 ---------------------------------------------------------~~~~~~~h~~rvg~laW~-~~~l 273 (484)
T KOG0305|consen 252 ---------------------------------------------------------TRTLRGSHASRVGSLAWN-SSVL 273 (484)
T ss_pred ---------------------------------------------------------cccccCCcCceeEEEecc-CceE
Confidence 334455 89999999998 4489
Q ss_pred EEEECCCcEEEEECCCCeeeee-ec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCc-EEEEecCCCcEEEEEEe
Q 005352 369 LSASIDKTVRLWRVGNDHCLRV-FP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH-VVDWVDIRQIVTAVCYR 445 (701)
Q Consensus 369 ~s~s~dg~I~iWd~~~~~~~~~-~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~-~~~~~~~~~~i~~i~~s 445 (701)
.+|+.|+.|..+|++..+.... +. |...|..++|++ ++++|++|+.|+.+.|||..... ...+..|...|.+++|+
T Consensus 274 ssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~-d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awc 352 (484)
T KOG0305|consen 274 SSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSP-DGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWC 352 (484)
T ss_pred EEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECC-CCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeC
Confidence 9999999999999998876555 44 999999999999 99999999999999999996554 44778899999999999
Q ss_pred e-CCCeEEEE--ecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEE-CCCcEEEEeCCccce
Q 005352 446 P-DGQGGIVG--SMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSC-ADSQVRILQGPNVIG 521 (701)
Q Consensus 446 p-~g~~l~~g--s~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s-~dg~I~iwd~~~~~~ 521 (701)
| ....||+| +.|+.|++||..++.... .......|..+.|++....++.+.+ .++.|.||+..+...
T Consensus 353 P~q~~lLAsGGGs~D~~i~fwn~~~g~~i~---------~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~ 423 (484)
T KOG0305|consen 353 PWQSGLLATGGGSADRCIKFWNTNTGARID---------SVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKL 423 (484)
T ss_pred CCccCceEEcCCCcccEEEEEEcCCCcEec---------ccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccce
Confidence 9 45577775 459999999999887643 2234478999999995444544433 378999999998888
Q ss_pred eeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 522 KYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 522 ~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
.....+|...|..++++|||..|++|+.|.++++|++-+..
T Consensus 424 ~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~~ 464 (484)
T KOG0305|consen 424 VAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDER 464 (484)
T ss_pred eeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCCC
Confidence 77788899999999999999999999999999999998854
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=9e-24 Score=191.22 Aligned_cols=285 Identities=17% Similarity=0.243 Sum_probs=224.1
Q ss_pred eeeecCccccccccccceEEEEEccCccch----hhh----cccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEE
Q 005352 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRSKE----LSA----LYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQ 278 (701)
Q Consensus 207 ~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~----~~~----~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd 278 (701)
.++.+.+...++|+...+.+|-.+..-... ... ......-+.|++.|.|.+|+|+|++||||+.|.+|++.-
T Consensus 38 v~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~ 117 (350)
T KOG0641|consen 38 VAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLP 117 (350)
T ss_pred EEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCceEEEEe
Confidence 456777788888999999999887532211 111 111223467999999999999999999999999999987
Q ss_pred eecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeE
Q 005352 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEIL 358 (701)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~ 358 (701)
++...+... .+-.+|.-|.+.|.
T Consensus 118 fn~dt~~~~---------------------------------------------------------g~dle~nmhdgtir 140 (350)
T KOG0641|consen 118 FNADTCNAT---------------------------------------------------------GHDLEFNMHDGTIR 140 (350)
T ss_pred ccccccccc---------------------------------------------------------CcceeeeecCCcee
Confidence 755431100 23345667999999
Q ss_pred EEEEecC---C--eEEEEE-CCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEE
Q 005352 359 DLSWSKN---N--YLLSAS-IDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD 431 (701)
Q Consensus 359 ~l~~s~~---~--~l~s~s-~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~ 431 (701)
+++|..+ + .|++++ .|..|++-|...++....+. |.+.|.++-- - ++-.|++|+.|.+|++||++-..++.
T Consensus 141 dl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilalys-w-n~~m~~sgsqdktirfwdlrv~~~v~ 218 (350)
T KOG0641|consen 141 DLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALYS-W-NGAMFASGSQDKTIRFWDLRVNSCVN 218 (350)
T ss_pred eeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEEE-e-cCcEEEccCCCceEEEEeeeccceee
Confidence 9999754 2 566554 46778888988998888776 8998888743 2 78899999999999999999888776
Q ss_pred EecC--------CCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEE
Q 005352 432 WVDI--------RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVM 503 (701)
Q Consensus 432 ~~~~--------~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~ 503 (701)
..+. ...|.+++..|.|+.|++|..|..+.+||++.+.+.+. ...|...|.++.|+| ...+++
T Consensus 219 ~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~--------f~phsadir~vrfsp-~a~yll 289 (350)
T KOG0641|consen 219 TLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQR--------FHPHSADIRCVRFSP-GAHYLL 289 (350)
T ss_pred eccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeee--------eCCCccceeEEEeCC-CceEEE
Confidence 5542 25699999999999999999999999999999886543 345668899999999 789999
Q ss_pred EEECCCcEEEEeCCc----cceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 005352 504 VSCADSQVRILQGPN----VIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCI 559 (701)
Q Consensus 504 ~~s~dg~I~iwd~~~----~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~ 559 (701)
+++.|..|++-|+.. .........|...+..+.|+|..--+++.+.|.++.+|-++
T Consensus 290 t~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 290 TCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred EecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 999999999999862 22233334588899999999999999999999999999864
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.9e-24 Score=230.77 Aligned_cols=256 Identities=15% Similarity=0.198 Sum_probs=190.3
Q ss_pred CCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecC
Q 005352 249 HDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTS 328 (701)
Q Consensus 249 H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (701)
|-..|.....++++..+++++.+..+..|+...+..+....
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~--------------------------------------- 59 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHT--------------------------------------- 59 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeecc---------------------------------------
Confidence 33456667778888888999999999999865543111100
Q ss_pred CccEEEcCCccccccCCCeEEEcCCccCeEEEEEec-CC-eEEEEECCCcEEEEECCCCe-------eeeeec-CCCCeE
Q 005352 329 ESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK-NN-YLLSASIDKTVRLWRVGNDH-------CLRVFP-HSNYVT 398 (701)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~-~~-~l~s~s~dg~I~iWd~~~~~-------~~~~~~-h~~~V~ 398 (701)
...++. .....+.+|.+.|++++|+| ++ +|++|+.|++|++||+.++. ++..+. |...|.
T Consensus 60 ---------~~G~~~-~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~ 129 (493)
T PTZ00421 60 ---------DYGKLA-SNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVG 129 (493)
T ss_pred ---------ccccCC-CCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEE
Confidence 000000 11234679999999999999 66 99999999999999997652 344444 899999
Q ss_pred EEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEE-ecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEE
Q 005352 399 CVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDW-VDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEIC 477 (701)
Q Consensus 399 ~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~-~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~ 477 (701)
+++|+|..+++|++++.|++|+|||+.+++.+.. ..|...|.+++|+|+|..|++++.|+.|++||+++++.....
T Consensus 130 ~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl--- 206 (493)
T PTZ00421 130 IVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSV--- 206 (493)
T ss_pred EEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEE---
Confidence 9999994457999999999999999999887644 457889999999999999999999999999999987654321
Q ss_pred eecccCCCC-CCeeEEEEecCCCCEEEEEE----CCCcEEEEeCCccceeeecc--cCCCCeEEEEEecCCCEEEEEe-C
Q 005352 478 VHSKKKAPC-KRITGFQFLPQDSSKVMVSC----ADSQVRILQGPNVIGKYKGL--RRSGNQLSACFTSDGKHIVSAG-E 549 (701)
Q Consensus 478 ~~~~~~~~~-~~i~~l~~~p~~~~~l~~~s----~dg~I~iwd~~~~~~~~~~~--~~~~~v~~l~~s~dg~~l~sgs-~ 549 (701)
..|. ..+..+.|.++ ...+++++ .|+.|++||+++....+... .....+....|++++++|++++ .
T Consensus 207 -----~~H~~~~~~~~~w~~~-~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkg 280 (493)
T PTZ00421 207 -----EAHASAKSQRCLWAKR-KDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKG 280 (493)
T ss_pred -----ecCCCCcceEEEEcCC-CCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeC
Confidence 1122 23456778884 45555543 47999999998655443322 2334566677999999999887 5
Q ss_pred CCcEEEEeCCCCC
Q 005352 550 DSNVYMWNCIGHE 562 (701)
Q Consensus 550 Dg~I~iWd~~~~~ 562 (701)
|+.|++|++.+++
T Consensus 281 Dg~Iriwdl~~~~ 293 (493)
T PTZ00421 281 EGNIRCFELMNER 293 (493)
T ss_pred CCeEEEEEeeCCc
Confidence 9999999998876
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.6e-26 Score=224.80 Aligned_cols=265 Identities=18% Similarity=0.295 Sum_probs=211.0
Q ss_pred eecccCcceeeecCccc---cccccccceEEEEEccCccchhh---hcccCceeccCCCcEEEEEEccC-CCEEEEEeCC
Q 005352 199 VVDKQGEGERVRLNEED---AMFCSKVQRVKVYHCKKRSKELS---ALYKGQEIQAHDGSILTMKFSPD-GQYLASAGDD 271 (701)
Q Consensus 199 ~~~~~~~~~~~~~~~~~---~~~~~~d~~v~vw~~~~~~~~~~---~~~~~~~l~~H~~~I~~l~fspd-g~~Lasgs~D 271 (701)
.+.|+++++++++.++. +++.+..+.|.|||+.+...... .....-.|.+|++.-++|+|++. .-+|++|+.|
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d 199 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDD 199 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCC
Confidence 46799999999987753 44568889999999976543332 23444578999998899999985 3479999999
Q ss_pred CcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEc
Q 005352 272 GVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFH 351 (701)
Q Consensus 272 g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (701)
++|++||+........ ...+...+.
T Consensus 200 ~~i~lwdi~~~~~~~~-------------------------------------------------------~~~p~~~~~ 224 (422)
T KOG0264|consen 200 HTICLWDINAESKEDK-------------------------------------------------------VVDPKTIFS 224 (422)
T ss_pred CcEEEEeccccccCCc-------------------------------------------------------cccceEEee
Confidence 9999999976532100 014667889
Q ss_pred CCccCeEEEEEecCC--eEEEEECCCcEEEEECCC--Ceeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCC
Q 005352 352 GHSGEILDLSWSKNN--YLLSASIDKTVRLWRVGN--DHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS 426 (701)
Q Consensus 352 ~h~~~I~~l~~s~~~--~l~s~s~dg~I~iWd~~~--~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~ 426 (701)
+|...|.+++|++.. .|++++.|+.+.|||+++ .++..... |...|.|++|+|.++.+||+|+.|++|.+||+|+
T Consensus 225 ~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRn 304 (422)
T KOG0264|consen 225 GHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRN 304 (422)
T ss_pred cCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechh
Confidence 999999999999976 999999999999999995 33433333 9999999999999999999999999999999997
Q ss_pred Cc--EEEEecCCCcEEEEEEeeCC-CeEEEEecCCcEEEEECCCCeeee------eeeEEeecccCCCCCCeeEEEEecC
Q 005352 427 CH--VVDWVDIRQIVTAVCYRPDG-QGGIVGSMMGDCRFYNVSDNHLEL------DAEICVHSKKKAPCKRITGFQFLPQ 497 (701)
Q Consensus 427 ~~--~~~~~~~~~~i~~i~~sp~g-~~l~~gs~dg~v~i~d~~~~~~~~------~~~~~~~~~~~~~~~~i~~l~~~p~ 497 (701)
-. +..+..|...|..|.|+|.. ..|++++.|+.+.+||+..-.... ..+..+.-...+|...|..+.|+|.
T Consensus 305 L~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ 384 (422)
T KOG0264|consen 305 LNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPN 384 (422)
T ss_pred cccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCC
Confidence 54 44677899999999999964 577888899999999997532221 1122333345678889999999999
Q ss_pred CCCEEEEEECCCcEEEEeCCc
Q 005352 498 DSSKVMVSCADSQVRILQGPN 518 (701)
Q Consensus 498 ~~~~l~~~s~dg~I~iwd~~~ 518 (701)
.+..|++.+.|+.+.||....
T Consensus 385 ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 385 EPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred CCeEEEEecCCceEEEeeccc
Confidence 899999999999999999764
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-25 Score=224.47 Aligned_cols=255 Identities=18% Similarity=0.308 Sum_probs=196.3
Q ss_pred eeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEe
Q 005352 245 EIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSL 324 (701)
Q Consensus 245 ~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (701)
.+++|+..|.++++.|.|-.|+|||.|..|++||+.........
T Consensus 162 ~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~------------------------------------ 205 (641)
T KOG0772|consen 162 QLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRS------------------------------------ 205 (641)
T ss_pred eccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchh------------------------------------
Confidence 46789999999999999999999999999999999764311000
Q ss_pred eecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeee------------
Q 005352 325 RRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVF------------ 391 (701)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~------------ 391 (701)
| +.+.- .....|.++.|++.+ .|+..+.....+|+|-...+.+...
T Consensus 206 ---------------f----r~l~P--~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nT 264 (641)
T KOG0772|consen 206 ---------------F----RQLQP--CETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNT 264 (641)
T ss_pred ---------------h----hccCc--ccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhcc
Confidence 0 11111 233478999999998 8888888889999997655544333
Q ss_pred -cCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCc-EEEEe------cCCCcEEEEEEeeCCCeEEEEecCCcEEEE
Q 005352 392 -PHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH-VVDWV------DIRQIVTAVCYRPDGQGGIVGSMMGDCRFY 463 (701)
Q Consensus 392 -~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~-~~~~~------~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~ 463 (701)
.|...++|.+|+|.+...|++++.||++||||+...+ ....+ +.+-+++.++|+|+|+.||+|..||.|.+|
T Consensus 265 KGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W 344 (641)
T KOG0772|consen 265 KGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIW 344 (641)
T ss_pred CCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeee
Confidence 2888899999999888899999999999999997643 22222 234568999999999999999999999999
Q ss_pred ECCCCeeeeeeeEEeecccCCCCC--CeeEEEEecCCCCEEEEEECCCcEEEEeCCccceee---ecccCCCCeEEEEEe
Q 005352 464 NVSDNHLELDAEICVHSKKKAPCK--RITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKY---KGLRRSGNQLSACFT 538 (701)
Q Consensus 464 d~~~~~~~~~~~~~~~~~~~~~~~--~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~---~~~~~~~~v~~l~~s 538 (701)
+........ .+. .+..|.. .|+++.|++ ++++|++-+.|+++++||+++....+ .+.....+-+.++||
T Consensus 345 ~~~~~~v~p--~~~---vk~AH~~g~~Itsi~FS~-dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FS 418 (641)
T KOG0772|consen 345 DKGSRTVRP--VMK---VKDAHLPGQDITSISFSY-DGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFS 418 (641)
T ss_pred ecCCccccc--ceE---eeeccCCCCceeEEEecc-ccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccC
Confidence 985433221 111 1334444 899999999 89999999999999999998655443 344455677899999
Q ss_pred cCCCEEEEEe------CCCcEEEEeCCCCC
Q 005352 539 SDGKHIVSAG------EDSNVYMWNCIGHE 562 (701)
Q Consensus 539 ~dg~~l~sgs------~Dg~I~iWd~~~~~ 562 (701)
|+.++|+||+ ..|.+++||-.+-+
T Consensus 419 Pd~kli~TGtS~~~~~~~g~L~f~d~~t~d 448 (641)
T KOG0772|consen 419 PDDKLILTGTSAPNGMTAGTLFFFDRMTLD 448 (641)
T ss_pred CCceEEEecccccCCCCCceEEEEecccee
Confidence 9999999985 34678999876655
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-24 Score=212.93 Aligned_cols=275 Identities=19% Similarity=0.234 Sum_probs=226.6
Q ss_pred ceeeecCc--cccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCe
Q 005352 206 GERVRLNE--EDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDE 283 (701)
Q Consensus 206 ~~~~~~~~--~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~ 283 (701)
+.++...+ ...++|+.|..+.++|..... +. ..++||...|+.+.|+|+...+++++.|-.|+||.+....
T Consensus 222 i~ald~~~s~~~ilTGG~d~~av~~d~~s~q--~l-----~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s 294 (506)
T KOG0289|consen 222 ITALDIIPSSSKILTGGEDKTAVLFDKPSNQ--IL-----ATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS 294 (506)
T ss_pred eeEEeecCCCCcceecCCCCceEEEecchhh--hh-----hhccCcceEEEEEEeccchhheeecCCcceEEeecccccc
Confidence 34454444 678889999999999865432 11 3578899999999999999999999999999999986543
Q ss_pred eeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEe
Q 005352 284 RLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS 363 (701)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s 363 (701)
.......|..+|+.+..+
T Consensus 295 --------------------------------------------------------------~~~~~~~h~~~V~~ls~h 312 (506)
T KOG0289|consen 295 --------------------------------------------------------------EPTSSRPHEEPVTGLSLH 312 (506)
T ss_pred --------------------------------------------------------------Cccccccccccceeeeec
Confidence 122345699999999999
Q ss_pred cCC-eEEEEECCCcEEEEECCCCeeeeeecCC---CCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEE-EEecCCCc
Q 005352 364 KNN-YLLSASIDKTVRLWRVGNDHCLRVFPHS---NYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQI 438 (701)
Q Consensus 364 ~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~h~---~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~-~~~~~~~~ 438 (701)
|+| ||++++.|++..+.|++++.++....+. -.+++.+|+| |+.+|.+|..||.|+|||+.++..+ .+.+|.++
T Consensus 313 ~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~ 391 (506)
T KOG0289|consen 313 PTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGP 391 (506)
T ss_pred cCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC-CceEEeccCCCceEEEEEcCCccccccCCCCCCc
Confidence 999 9999999999999999999999888764 3589999999 9999999999999999999988766 56679999
Q ss_pred EEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCC-
Q 005352 439 VTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP- 517 (701)
Q Consensus 439 i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~- 517 (701)
|..|+|+.+|-+|++++.|+.|++||++..+...... ......+..+.|.+ .+.+|++++.+=+|++++..
T Consensus 392 vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~-------l~~~~~v~s~~fD~-SGt~L~~~g~~l~Vy~~~k~~ 463 (506)
T KOG0289|consen 392 VKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQ-------LDEKKEVNSLSFDQ-SGTYLGIAGSDLQVYICKKKT 463 (506)
T ss_pred eeEEEeccCceEEEEEecCCeEEEEEehhhcccceee-------ccccccceeEEEcC-CCCeEEeecceeEEEEEeccc
Confidence 9999999999999999999999999999765332211 11223688999998 78999999888888888743
Q ss_pred -ccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 005352 518 -NVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNC 558 (701)
Q Consensus 518 -~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~ 558 (701)
..........|.+..+.+.|....++++++|.|..++++.+
T Consensus 464 k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 464 KSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 33444444557788999999999999999999999998864
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.3e-25 Score=203.82 Aligned_cols=276 Identities=18% Similarity=0.247 Sum_probs=225.5
Q ss_pred EEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec---CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEe
Q 005352 348 HEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP---HSNYVTCVHFNPVDDNYFISGSIDGKVRIWA 423 (701)
Q Consensus 348 ~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~---h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd 423 (701)
..+++|...|.+++|+-+| .|++|+.|+++.+|++.......... |.+.|-.++|+|...+.|++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 4567899999999999999 99999999999999998875554443 8889999999998999999999999999999
Q ss_pred CCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEE
Q 005352 424 VLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVM 503 (701)
Q Consensus 424 ~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~ 503 (701)
++.++++........-..++|+|+|++++++..|..|.+.|.++.+.....+ ....+.-+.|+. ++.+++
T Consensus 94 ~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~---------~~~e~ne~~w~~-~nd~Ff 163 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ---------FKFEVNEISWNN-SNDLFF 163 (313)
T ss_pred eccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc---------ccceeeeeeecC-CCCEEE
Confidence 9999999888877777889999999999999999999999999877654322 224466788884 678888
Q ss_pred EEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCCCCccccccccccccccCCce
Q 005352 504 VSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNAS 583 (701)
Q Consensus 504 ~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (701)
.....|.|.|.....++.......|.....|+.|+|+|+|+|+|+.|..+.+||++.-- ..+.+
T Consensus 164 lt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELi--------C~R~i-------- 227 (313)
T KOG1407|consen 164 LTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELI--------CERCI-------- 227 (313)
T ss_pred EecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhh--------hheee--------
Confidence 88888999999999888888888899999999999999999999999999999987543 11111
Q ss_pred EEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCCcccCCCCccCCCCccccccccchhhhhhhh
Q 005352 584 IAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLSSASALHKSQYKFL 663 (701)
Q Consensus 584 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~ 663 (701)
....-+++.+.|+-+ +++++++|.|.-|-|=..+++..+..++..
T Consensus 228 --------------------sRldwpVRTlSFS~d----g~~lASaSEDh~IDIA~vetGd~~~eI~~~----------- 272 (313)
T KOG1407|consen 228 --------------------SRLDWPVRTLSFSHD----GRMLASASEDHFIDIAEVETGDRVWEIPCE----------- 272 (313)
T ss_pred --------------------ccccCceEEEEeccC----cceeeccCccceEEeEecccCCeEEEeecc-----------
Confidence 001235667788886 788899999999988777888777766333
Q ss_pred hcccccccccCCCccEEEEecCC
Q 005352 664 KSSCLCTTSSHAWGLVIVTAGWD 686 (701)
Q Consensus 664 ~~~~~~~~~~~~~g~~ivTgg~D 686 (701)
++-+.+++.+. -.+|+=|+.|
T Consensus 273 -~~t~tVAWHPk-~~LLAyA~dd 293 (313)
T KOG1407|consen 273 -GPTFTVAWHPK-RPLLAYACDD 293 (313)
T ss_pred -CCceeEEecCC-CceeeEEecC
Confidence 45566677777 6677766655
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.3e-25 Score=217.75 Aligned_cols=381 Identities=15% Similarity=0.211 Sum_probs=258.4
Q ss_pred EEEEecccchhhHHHHHhhccchhhHHHHHHhHHhhhccceeeecccC--cceeeecCc-cccccccccceEE--EEEcc
Q 005352 157 YLENTSELLPLMDEIVEKESSAAGKAERVKKRWFSRLRSLACVVDKQG--EGERVRLNE-EDAMFCSKVQRVK--VYHCK 231 (701)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~d~~v~--vw~~~ 231 (701)
...+..+++++++.+.+......++..||+.++.+.++...|+....+ +.++-...+ +.++ -+.-+.|- --.+.
T Consensus 116 ~~~~~nr~rk~r~~e~e~~~~~~~Y~~RLr~~F~k~~~~PkWA~~~~~~~~~DDe~e~s~d~lL-~tt~~yi~s~s~~Lp 194 (514)
T KOG2055|consen 116 ADKMTNRLRKLRTTENEGLLSGKEYKGRLREQFQKRYPVPKWAKKASGKDSEDDEEEGSLDDLL-KTTVGYIDSRSKLLP 194 (514)
T ss_pred hhhhhhhhhhccccccccccchHHHHHHHHHHHHHhcCCCcccccccccccccccccccHHHHH-HhhhcccccccccCC
Confidence 346667788888887777788889999999999999987777654333 111111111 0011 11111111 00000
Q ss_pred CccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeec--CeeeeeecCCCCCCceeEEeeccCCCcc
Q 005352 232 KRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVE--DERLTEVDIPEIDPSCIYFTVNHLSELK 309 (701)
Q Consensus 232 ~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (701)
.....+..+.....-..-.+.|++|.|+|..+.|++||.||+++||.+.. +..++.+.+...+..+..|.+++...+.
T Consensus 195 ~~tl~~krlkDaNa~~ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~ 274 (514)
T KOG2055|consen 195 PGTLNIKRLKDANAAHPSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIF 274 (514)
T ss_pred CceeeeEeecccccCCcCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEE
Confidence 00111111111111122357899999999999999999999999999864 4567777777777777777775542221
Q ss_pred eeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCc-cCeEEEEEecCC-eEEEEECCCcEEEEECCCCee
Q 005352 310 PLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHS-GEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHC 387 (701)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~ 387 (701)
....+ ..+ ..|+..... ...+....|+. ..+....+++++ +|+..+..|.|.|....+++.
T Consensus 275 ---~s~rr-ky~-----------ysyDle~ak--~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~el 337 (514)
T KOG2055|consen 275 ---TSGRR-KYL-----------YSYDLETAK--VTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKEL 337 (514)
T ss_pred ---ecccc-eEE-----------EEeeccccc--cccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhh
Confidence 11111 111 111111110 02233334444 456777889998 999999999999999999999
Q ss_pred eeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcE--EEEEEeeCCCeEEEEecCCcEEEEEC
Q 005352 388 LRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIV--TAVCYRPDGQGGIVGSMMGDCRFYNV 465 (701)
Q Consensus 388 ~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i--~~i~~sp~g~~l~~gs~dg~v~i~d~ 465 (701)
+..++..+.|..++|+. +++.|++.+.+|.|.+||++...++......+.| +++|.++++.+||+|+..|.|.|||.
T Consensus 338 i~s~KieG~v~~~~fsS-dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~ 416 (514)
T KOG2055|consen 338 ITSFKIEGVVSDFTFSS-DSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDG 416 (514)
T ss_pred hheeeeccEEeeEEEec-CCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEecc
Confidence 99999999999999997 8999999999999999999999888666555554 56778899999999999999999997
Q ss_pred CCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEEC--CCcEEEEeCCccc--eeeec-ccCCCCeEEEEEecC
Q 005352 466 SDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCA--DSQVRILQGPNVI--GKYKG-LRRSGNQLSACFTSD 540 (701)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~--dg~I~iwd~~~~~--~~~~~-~~~~~~v~~l~~s~d 540 (701)
.+.... ....+..........|++++|+| +.++|+.++. +..+++..+.... ..+.. ...-+.|+|++|+|.
T Consensus 417 ~s~~~s--~~PkPik~~dNLtt~Itsl~Fn~-d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~ 493 (514)
T KOG2055|consen 417 NSCFAS--TNPKPIKTVDNLTTAITSLQFNH-DAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPN 493 (514)
T ss_pred chhhcc--CCCCchhhhhhhheeeeeeeeCc-chhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCC
Confidence 653211 11111111223446799999999 7888888776 7889998876432 22221 224568999999999
Q ss_pred CCEEEEEeCCCcEEEEeCC
Q 005352 541 GKHIVSAGEDSNVYMWNCI 559 (701)
Q Consensus 541 g~~l~sgs~Dg~I~iWd~~ 559 (701)
+.+|+.|.++|.+.+|.+.
T Consensus 494 sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 494 SGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred CceEEeecCCCceeeEeec
Confidence 9999999999999999875
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3e-24 Score=202.85 Aligned_cols=244 Identities=23% Similarity=0.366 Sum_probs=195.6
Q ss_pred CCCcEEEEEEccC-CCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeec
Q 005352 249 HDGSILTMKFSPD-GQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRT 327 (701)
Q Consensus 249 H~~~I~~l~fspd-g~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (701)
-...|.+|+|||. ..+|+.++.||+||+|+++.....
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~------------------------------------------ 63 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQL------------------------------------------ 63 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcc------------------------------------------
Confidence 5678999999994 556668999999999999874210
Q ss_pred CCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCC
Q 005352 328 SESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVD 406 (701)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~ 406 (701)
.+ .....|.++|.+++|+.+| .+++|+.|+.+++||+.+++....-.|..+|.++.|-+ .
T Consensus 64 -----------------~~-ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~-~ 124 (347)
T KOG0647|consen 64 -----------------VP-KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAAHDAPVKTCHWVP-G 124 (347)
T ss_pred -----------------cc-hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeeeeeecccceeEEEEec-C
Confidence 00 2235689999999999999 99999999999999999998887777999999999987 5
Q ss_pred CC--EEEEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCC
Q 005352 407 DN--YFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKA 484 (701)
Q Consensus 407 ~~--~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~ 484 (701)
.. .|++|+.|.+|+.||++....+..+...+.+.++..-. ..++++..+..|.+|++++....... ....
T Consensus 125 ~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~--pm~vVata~r~i~vynL~n~~te~k~------~~Sp 196 (347)
T KOG0647|consen 125 MNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLY--PMAVVATAERHIAVYNLENPPTEFKR------IESP 196 (347)
T ss_pred CCcceeEecccccceeecccCCCCeeeeeeccceeeehhccC--ceeEEEecCCcEEEEEcCCCcchhhh------hcCc
Confidence 55 89999999999999999999998888889888886643 48899999999999999876433211 1122
Q ss_pred CCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCcc--c--eeeecccC-------CCCeEEEEEecCCCEEEEEeCCCcE
Q 005352 485 PCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV--I--GKYKGLRR-------SGNQLSACFTSDGKHIVSAGEDSNV 553 (701)
Q Consensus 485 ~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~--~--~~~~~~~~-------~~~v~~l~~s~dg~~l~sgs~Dg~I 553 (701)
....+.+++..+ +....+.|+-+|.+-|..+... . ..|+.|+. --.|++++|+|....|+|++.||++
T Consensus 197 Lk~Q~R~va~f~-d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf 275 (347)
T KOG0647|consen 197 LKWQTRCVACFQ-DKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTF 275 (347)
T ss_pred ccceeeEEEEEe-cCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceE
Confidence 335678888888 5666699999999999877643 3 34444442 1257889999999999999999999
Q ss_pred EEEeCCCCC
Q 005352 554 YMWNCIGHE 562 (701)
Q Consensus 554 ~iWd~~~~~ 562 (701)
.+||-+...
T Consensus 276 ~FWDkdar~ 284 (347)
T KOG0647|consen 276 SFWDKDART 284 (347)
T ss_pred EEecchhhh
Confidence 999976554
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.1e-26 Score=218.01 Aligned_cols=287 Identities=13% Similarity=0.204 Sum_probs=228.9
Q ss_pred eeccCCCcEEEEEEccCC-CEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEE
Q 005352 245 EIQAHDGSILTMKFSPDG-QYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (701)
Q Consensus 245 ~l~~H~~~I~~l~fspdg-~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (701)
.|.||...|.|++=+|.. ..+|||+.||.|+|||+.+..
T Consensus 61 ~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~---------------------------------------- 100 (433)
T KOG0268|consen 61 SLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRE---------------------------------------- 100 (433)
T ss_pred hccccccccchhhcCcchhhhhhccccCceEEEEehhhhh----------------------------------------
Confidence 357899999999999976 679999999999999997753
Q ss_pred eeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCCeEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEe
Q 005352 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFN 403 (701)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~ 403 (701)
.+..|..|.+.|..|++.. +.+++++.|++|+.|-+.- .++.++.....+..|.-+
T Consensus 101 ----------------------~~~~f~AH~G~V~Gi~v~~-~~~~tvgdDKtvK~wk~~~-~p~~tilg~s~~~gIdh~ 156 (433)
T KOG0268|consen 101 ----------------------CIRTFKAHEGLVRGICVTQ-TSFFTVGDDKTVKQWKIDG-PPLHTILGKSVYLGIDHH 156 (433)
T ss_pred ----------------------hhheeecccCceeeEEecc-cceEEecCCcceeeeeccC-Ccceeeeccccccccccc
Confidence 3456778999999999976 6899999999999999866 477777778888888887
Q ss_pred eCCCCEEEEEEcCCcEEEEeCCCCcEEEEe-cCCCcEEEEEEeeCCC-eEEEEecCCcEEEEECCCCeeeeeeeEEeecc
Q 005352 404 PVDDNYFISGSIDGKVRIWAVLSCHVVDWV-DIRQIVTAVCYRPDGQ-GGIVGSMMGDCRFYNVSDNHLELDAEICVHSK 481 (701)
Q Consensus 404 p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~-~~~~~i~~i~~sp~g~-~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~ 481 (701)
. .++.|+|++.+ |.|||..-...+..+ -....|.++.|+|... .|+++..|+.|.+||+++........+.
T Consensus 157 ~-~~~~FaTcGe~--i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~---- 229 (433)
T KOG0268|consen 157 R-KNSVFATCGEQ--IDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILT---- 229 (433)
T ss_pred c-ccccccccCce--eeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeee----
Confidence 7 78889998754 999999766665433 3456799999999665 5566669999999999998765443332
Q ss_pred cCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecc-cCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 005352 482 KKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGL-RRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIG 560 (701)
Q Consensus 482 ~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~-~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~ 560 (701)
..-+.|+|+| ..-.++++..|..++.||++.+......+ .|.+.|.++.|+|.|+-+++||.|.+|+||.++.
T Consensus 230 -----mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~ 303 (433)
T KOG0268|consen 230 -----MRTNTICWNP-EAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNH 303 (433)
T ss_pred -----ccccceecCc-cccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCC
Confidence 3346799999 88899999999999999998665554432 3888999999999999999999999999999887
Q ss_pred CCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCCcccCCCC
Q 005352 561 HEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPE 640 (701)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~ 640 (701)
+.... ..+......+..+.||-+ ++.++++|.|+.+++|..
T Consensus 304 ~~SRd-----------------------------------iYhtkRMq~V~~Vk~S~D----skyi~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 304 GHSRD-----------------------------------IYHTKRMQHVFCVKYSMD----SKYIISGSDDGNVRLWKA 344 (433)
T ss_pred Ccchh-----------------------------------hhhHhhhheeeEEEEecc----ccEEEecCCCcceeeeec
Confidence 76211 122223344566677776 788899999999999997
Q ss_pred ccCCCCc
Q 005352 641 EKLPALS 647 (701)
Q Consensus 641 ~~~~~~~ 647 (701)
...+.+.
T Consensus 345 ~Aseklg 351 (433)
T KOG0268|consen 345 KASEKLG 351 (433)
T ss_pred chhhhcC
Confidence 6554443
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-24 Score=236.92 Aligned_cols=300 Identities=21% Similarity=0.274 Sum_probs=231.3
Q ss_pred cCCCcEEEEEEccCCCEEEEEe--CCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEee
Q 005352 248 AHDGSILTMKFSPDGQYLASAG--DDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLR 325 (701)
Q Consensus 248 ~H~~~I~~l~fspdg~~Lasgs--~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (701)
.++..|.++..+|||..+|||| .||.++||+.+.--. +..
T Consensus 11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~--~~~------------------------------------ 52 (942)
T KOG0973|consen 11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLD--EKE------------------------------------ 52 (942)
T ss_pred cCCeeEEEEEecCCceeEecCCccccccceeeccccccc--hhh------------------------------------
Confidence 3566799999999999999999 899999999754210 000
Q ss_pred ecCCccEEEcCCccccc-cCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCC------------------C
Q 005352 326 RTSESACVVFPPKVFRI-LEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGN------------------D 385 (701)
Q Consensus 326 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~------------------~ 385 (701)
.... ..+.+.....|.+.|.|+.|+||| +||+|+.|+.|.||.... .
T Consensus 53 -------------~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~w 119 (942)
T KOG0973|consen 53 -------------EKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESW 119 (942)
T ss_pred -------------hhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCccccccccccccccee
Confidence 0000 126778888999999999999999 999999999999998762 0
Q ss_pred eeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEE-EEecCCCcEEEEEEeeCCCeEEEEecCCcEEEE
Q 005352 386 HCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFY 463 (701)
Q Consensus 386 ~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~-~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~ 463 (701)
+++..+. |...|..++|+| ++.+|++++.|++|.|||..+.+.+ .+.+|.+.|..+.|.|-|++|++-+.|++|++|
T Consensus 120 k~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvw 198 (942)
T KOG0973|consen 120 KVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVW 198 (942)
T ss_pred eEEEEEecCCCccceeccCC-CccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEE
Confidence 2333333 999999999999 9999999999999999999998766 566799999999999999999999999999999
Q ss_pred ECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEEC----CCcEEEEeCCccceeeecccCCCCeEEEEEec
Q 005352 464 NVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCA----DSQVRILQGPNVIGKYKGLRRSGNQLSACFTS 539 (701)
Q Consensus 464 d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~----dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~ 539 (701)
.+.+.... ..+.-..........+..+.|+| ++++|++... -..+.|.+-.+........+|..++.++.|+|
T Consensus 199 rt~dw~i~--k~It~pf~~~~~~T~f~RlSWSP-DG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP 275 (942)
T KOG0973|consen 199 RTSDWGIE--KSITKPFEESPLTTFFLRLSWSP-DGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNP 275 (942)
T ss_pred Ecccceee--EeeccchhhCCCcceeeecccCC-CcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeCh
Confidence 97764332 22222222233445678899999 7899988654 45688888877777777778999999999998
Q ss_pred C-----CC------------EEEEEeCCCcEEEEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCcc
Q 005352 540 D-----GK------------HIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQL 602 (701)
Q Consensus 540 d-----g~------------~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 602 (701)
. .+ .+|+|+.|++|.||.....++. ...
T Consensus 276 ~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl-----------------------------------~vi 320 (942)
T KOG0973|consen 276 KLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPL-----------------------------------FVI 320 (942)
T ss_pred HHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCch-----------------------------------hhh
Confidence 2 11 5789999999999997555421 112
Q ss_pred ccCCCCCCCccccCCCccccCccccccCCCCcccCCCCc
Q 005352 603 HVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEE 641 (701)
Q Consensus 603 ~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~ 641 (701)
+..-..++..++|+|+ |-.++.+|.||++.+..++
T Consensus 321 ~~lf~~SI~DmsWspd----G~~LfacS~DGtV~~i~Fe 355 (942)
T KOG0973|consen 321 HNLFNKSIVDMSWSPD----GFSLFACSLDGTVALIHFE 355 (942)
T ss_pred hhhhcCceeeeeEcCC----CCeEEEEecCCeEEEEEcc
Confidence 3334556777888887 6667889999998764443
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.2e-24 Score=200.86 Aligned_cols=241 Identities=18% Similarity=0.291 Sum_probs=199.9
Q ss_pred CCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecC
Q 005352 249 HDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTS 328 (701)
Q Consensus 249 H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (701)
-+..|..|.|+|.+..|+.++.||.+++|++........
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~----------------------------------------- 50 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLK----------------------------------------- 50 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhh-----------------------------------------
Confidence 467899999999999999999999999999987642211
Q ss_pred CccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCCeEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCC
Q 005352 329 ESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDN 408 (701)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~ 408 (701)
..|..++++++|.++..+++|+.||.|+.+|+.+++....-.|..+|+||.+++ ..+
T Consensus 51 ----------------------~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~-~~~ 107 (323)
T KOG1036|consen 51 ----------------------FKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSY-EVG 107 (323)
T ss_pred ----------------------eecCCceeeeeccCCceEEEeccCceEEEEEecCCcceeeccCCCceEEEEeec-cCC
Confidence 237889999999998899999999999999999999988888999999999999 788
Q ss_pred EEEEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCC
Q 005352 409 YFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKR 488 (701)
Q Consensus 409 ~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 488 (701)
.+++|+.|++|++||.+....+........|.++.. .|+.|++|+.+..+.+||+++..... +.........
T Consensus 108 ~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~------q~reS~lkyq 179 (323)
T KOG1036|consen 108 CVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPF------QRRESSLKYQ 179 (323)
T ss_pred eEEEcccCccEEEEeccccccccccccCceEEEEec--cCCEEEEeecCceEEEEEcccccchh------hhccccceeE
Confidence 999999999999999998777766666778887766 46799999999999999999876432 2223334467
Q ss_pred eeEEEEecCCCCEEEEEECCCcEEEEeCC------ccceeeecccC-------CCCeEEEEEecCCCEEEEEeCCCcEEE
Q 005352 489 ITGFQFLPQDSSKVMVSCADSQVRILQGP------NVIGKYKGLRR-------SGNQLSACFTSDGKHIVSAGEDSNVYM 555 (701)
Q Consensus 489 i~~l~~~p~~~~~l~~~s~dg~I~iwd~~------~~~~~~~~~~~-------~~~v~~l~~s~dg~~l~sgs~Dg~I~i 555 (701)
+.++++.| ++.-+++++-||.|.+=... .....|+.|+. .-+|++++|+|-.+.|+||+.||.|.+
T Consensus 180 tR~v~~~p-n~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~ 258 (323)
T KOG1036|consen 180 TRCVALVP-NGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNI 258 (323)
T ss_pred EEEEEEec-CCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEE
Confidence 89999999 78888999999999884433 22334444332 237899999999999999999999999
Q ss_pred EeCCCCC
Q 005352 556 WNCIGHE 562 (701)
Q Consensus 556 Wd~~~~~ 562 (701)
||+.+.+
T Consensus 259 Wd~~~rK 265 (323)
T KOG1036|consen 259 WDLFNRK 265 (323)
T ss_pred ccCcchh
Confidence 9998876
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-23 Score=199.77 Aligned_cols=266 Identities=20% Similarity=0.263 Sum_probs=213.4
Q ss_pred eeecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeee
Q 005352 208 RVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTE 287 (701)
Q Consensus 208 ~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~ 287 (701)
++++..+.|++++.||.+++|+..... +.. .-.|..++.+++|.++ ..+++|+.||.|+.+|+.++.
T Consensus 20 ~f~~~~~~LLvssWDgslrlYdv~~~~--l~~------~~~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~---- 86 (323)
T KOG1036|consen 20 KFSPSSSDLLVSSWDGSLRLYDVPANS--LKL------KFKHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGN---- 86 (323)
T ss_pred EEcCcCCcEEEEeccCcEEEEeccchh--hhh------heecCCceeeeeccCC-ceEEEeccCceEEEEEecCCc----
Confidence 344556788999999999999987652 211 1238999999999874 578999999999999998864
Q ss_pred ecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-
Q 005352 288 VDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN- 366 (701)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~- 366 (701)
...+..|...|.||.+++..
T Consensus 87 -----------------------------------------------------------~~~igth~~~i~ci~~~~~~~ 107 (323)
T KOG1036|consen 87 -----------------------------------------------------------EDQIGTHDEGIRCIEYSYEVG 107 (323)
T ss_pred -----------------------------------------------------------ceeeccCCCceEEEEeeccCC
Confidence 12345699999999999865
Q ss_pred eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEE---EecCCCcEEEEE
Q 005352 367 YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD---WVDIRQIVTAVC 443 (701)
Q Consensus 367 ~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~---~~~~~~~i~~i~ 443 (701)
.+++||.|++|++||.+...+...+.....|.|+.. .++.|+.|+.+..|.+||+++..... ....+..+.+|+
T Consensus 108 ~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v---~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~ 184 (323)
T KOG1036|consen 108 CVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDV---SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVA 184 (323)
T ss_pred eEEEcccCccEEEEeccccccccccccCceEEEEec---cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEE
Confidence 999999999999999999888888887889999987 56889999999999999999875443 334567799999
Q ss_pred EeeCCCeEEEEecCCcEEEEECCCCeeeeeeeE--Eeeccc---CCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCc
Q 005352 444 YRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEI--CVHSKK---KAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN 518 (701)
Q Consensus 444 ~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~--~~~~~~---~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~ 518 (701)
+-|++..+++++-+|.|.+=.++........+. ..|... .....+|++++|+| -.+.|++|+.||.|.+||+.+
T Consensus 185 ~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp-~~~tfaTgGsDG~V~~Wd~~~ 263 (323)
T KOG1036|consen 185 LVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHP-IHGTFATGGSDGIVNIWDLFN 263 (323)
T ss_pred EecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEecc-ccceEEecCCCceEEEccCcc
Confidence 999999999999999998866665522222222 222221 12336899999999 588999999999999999998
Q ss_pred cceeeecccCCCCeEEEEEecCCCEEEEEeC
Q 005352 519 VIGKYKGLRRSGNQLSACFTSDGKHIVSAGE 549 (701)
Q Consensus 519 ~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~ 549 (701)
.+.....++....|.+++|+.+|..||+|+.
T Consensus 264 rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 264 RKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred hhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 7777777767788999999999999999973
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.4e-23 Score=225.04 Aligned_cols=207 Identities=14% Similarity=0.181 Sum_probs=157.3
Q ss_pred CeEEEcCCccCeEEEEEecC-C-eEEEEECCCcEEEEECCCCe--------eeeee-cCCCCeEEEEEeeCCCC-EEEEE
Q 005352 346 PLHEFHGHSGEILDLSWSKN-N-YLLSASIDKTVRLWRVGNDH--------CLRVF-PHSNYVTCVHFNPVDDN-YFISG 413 (701)
Q Consensus 346 ~~~~~~~h~~~I~~l~~s~~-~-~l~s~s~dg~I~iWd~~~~~--------~~~~~-~h~~~V~~l~f~p~~~~-~l~sg 413 (701)
++..+.+|.+.|.+++|+|+ + +|++|+.|++|+|||+.++. ++..+ .|...|.+++|+| ++. +|+++
T Consensus 66 ~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P-~g~~iLaSg 144 (568)
T PTZ00420 66 PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNP-MNYYIMCSS 144 (568)
T ss_pred eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECC-CCCeEEEEE
Confidence 45677899999999999997 4 99999999999999997642 22333 3889999999999 655 56789
Q ss_pred EcCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCee---
Q 005352 414 SIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRIT--- 490 (701)
Q Consensus 414 s~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~--- 490 (701)
+.|++|+|||+++++.+....+...|.+++|+|+|..|++++.|+.|++||++++...... ..|...+.
T Consensus 145 S~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl--------~gH~g~~~s~~ 216 (568)
T PTZ00420 145 GFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSF--------HIHDGGKNTKN 216 (568)
T ss_pred eCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEE--------ecccCCceeEE
Confidence 9999999999999987766667788999999999999999999999999999987654321 12222222
Q ss_pred --EEEEecCCCCEEEEEECCC----cEEEEeCCccceee---ecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 005352 491 --GFQFLPQDSSKVMVSCADS----QVRILQGPNVIGKY---KGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGH 561 (701)
Q Consensus 491 --~l~~~p~~~~~l~~~s~dg----~I~iwd~~~~~~~~---~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~ 561 (701)
...|++ ++.+|++++.++ +|+|||+++..... ....+.+.+......++|.++++|+.|+.|++|++..+
T Consensus 217 v~~~~fs~-d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 217 IWIDGLGG-DDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLG 295 (568)
T ss_pred EEeeeEcC-CCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCC
Confidence 223446 677888877764 79999998533322 22223333333434556899999999999999999765
Q ss_pred C
Q 005352 562 E 562 (701)
Q Consensus 562 ~ 562 (701)
.
T Consensus 296 ~ 296 (568)
T PTZ00420 296 S 296 (568)
T ss_pred c
Confidence 4
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.8e-24 Score=225.06 Aligned_cols=394 Identities=15% Similarity=0.188 Sum_probs=290.8
Q ss_pred cccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCC
Q 005352 214 EDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEI 293 (701)
Q Consensus 214 ~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~ 293 (701)
+.++.|+..|.+++|+++.+.. ..+++++...|+++.=+|--..+|.|..+|+|.|+++..++.+.++
T Consensus 173 NKIvvGs~~G~lql~Nvrt~K~-------v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sF----- 240 (910)
T KOG1539|consen 173 NKIVVGSSQGRLQLWNVRTGKV-------VYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSF----- 240 (910)
T ss_pred eeEEEeecCCcEEEEEeccCcE-------EEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEE-----
Confidence 3467799999999999865432 2467889999999999998889999999999999999988655444
Q ss_pred CCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC--eEEEE
Q 005352 294 DPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLSA 371 (701)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~--~l~s~ 371 (701)
+...+.|+.++|..|| .+++|
T Consensus 241 ---------------------------------------------------------k~d~g~VtslSFrtDG~p~las~ 263 (910)
T KOG1539|consen 241 ---------------------------------------------------------KQDWGRVTSLSFRTDGNPLLASG 263 (910)
T ss_pred ---------------------------------------------------------EccccceeEEEeccCCCeeEEec
Confidence 3234899999999999 88888
Q ss_pred ECCCcEEEEECCCCeeeeeec--CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCC----cEE-EEecCCCcEEEEEE
Q 005352 372 SIDKTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSC----HVV-DWVDIRQIVTAVCY 444 (701)
Q Consensus 372 s~dg~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~----~~~-~~~~~~~~i~~i~~ 444 (701)
+..|.+.+||++..+.+.... |.+.|+.+.|.| ....+++++.|+.+++|=..++ +.+ ...+|..+..+|.|
T Consensus 264 ~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~-~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irf 342 (910)
T KOG1539|consen 264 RSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLP-GEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRF 342 (910)
T ss_pred cCCceEEEEEcCCCeeeeeeeccccCCcccceecC-CCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheee
Confidence 899999999999998887776 889999999999 8899999999999988855433 233 34578899999998
Q ss_pred e-eCCCeEEEEecCCcEEEEECCCCeee----e------------e----------e--------------eEE------
Q 005352 445 R-PDGQGGIVGSMMGDCRFYNVSDNHLE----L------------D----------A--------------EIC------ 477 (701)
Q Consensus 445 s-p~g~~l~~gs~dg~v~i~d~~~~~~~----~------------~----------~--------------~~~------ 477 (701)
. .+|..+.+++.|++++.|++....+. . . . .+.
T Consensus 343 y~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~ 422 (910)
T KOG1539|consen 343 YGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKR 422 (910)
T ss_pred eccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcc
Confidence 8 68889999999998888876421100 0 0 0 000
Q ss_pred ------eec-----------ccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeec---ccCCCCeEEEEE
Q 005352 478 ------VHS-----------KKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKG---LRRSGNQLSACF 537 (701)
Q Consensus 478 ------~~~-----------~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~---~~~~~~v~~l~~ 537 (701)
... ..+.....+++++.++ -|++.+.|...|.|-+|++......-.. ..|..+|+.++.
T Consensus 423 ~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~-CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~ 501 (910)
T KOG1539|consen 423 SAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF-CGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAV 501 (910)
T ss_pred eEEEEeccCcccccEEecCccccccCcceEEEEEec-cCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEe
Confidence 000 0011224677888888 6899999999999999999877665544 459999999999
Q ss_pred ecCCCEEEEEeCCCcEEEEeCCCCCCCCccccc-cccccccccCCceEEecCCCC--CCCC--CCCCCccccCCCCCCCc
Q 005352 538 TSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAK-TIRSLERFTTNASIAIPWCGL--KCGN--AEKEPQLHVSDDDSPEN 612 (701)
Q Consensus 538 s~dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~--~~~~--~~~~~~~~~~~~~~~~~ 612 (701)
...++.+++++.+|.+++|+++........... .+...-.......+++..... ...+ .++-......+...++.
T Consensus 502 D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd 581 (910)
T KOG1539|consen 502 DGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITD 581 (910)
T ss_pred cCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceee
Confidence 999999999999999999999887632111111 111111111122222222211 1111 11122222335667899
Q ss_pred cccCCCccccCccccccCCCCcccCCCCccCCCCccccccccchhhhhhhhhcccccccccCCCccEEEEecCC-CeEeE
Q 005352 613 LAFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWD-GRIRS 691 (701)
Q Consensus 613 l~~sp~~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivTgg~D-G~Irv 691 (701)
++|||+ +.++++.+.|+++++||.-.+.++-.+... ..|.++.++++ |.+|+|+..| --|.+
T Consensus 582 ~~FS~D----grWlisasmD~tIr~wDlpt~~lID~~~vd------------~~~~sls~SPn-gD~LAT~Hvd~~gIyl 644 (910)
T KOG1539|consen 582 MTFSPD----GRWLISASMDSTIRTWDLPTGTLIDGLLVD------------SPCTSLSFSPN-GDFLATVHVDQNGIYL 644 (910)
T ss_pred eEeCCC----CcEEEEeecCCcEEEEeccCcceeeeEecC------------CcceeeEECCC-CCEEEEEEecCceEEE
Confidence 999998 899999999999999998888876655333 57888999999 9999999999 68999
Q ss_pred Eeec
Q 005352 692 FLNY 695 (701)
Q Consensus 692 w~~~ 695 (701)
|-|-
T Consensus 645 WsNk 648 (910)
T KOG1539|consen 645 WSNK 648 (910)
T ss_pred EEch
Confidence 9873
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.3e-25 Score=202.97 Aligned_cols=229 Identities=17% Similarity=0.308 Sum_probs=191.1
Q ss_pred ccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEeecCeeeeeecCC
Q 005352 213 EEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSP-DGQYLASAGDDGVVRLWQVVEDERLTEVDIP 291 (701)
Q Consensus 213 ~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~ 291 (701)
++.+++++.||.+++||.....+ +.+.++.|+..|.++.|++ +++.+++++.|++|++|+..-.
T Consensus 73 e~~~~~a~GDGSLrl~d~~~~s~------Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~--------- 137 (311)
T KOG0277|consen 73 ENQVIAASGDGSLRLFDLTMPSK------PIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRP--------- 137 (311)
T ss_pred cceEEEEecCceEEEeccCCCCc------chhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCC---------
Confidence 35667799999999999654433 3456788999999999998 4667888999999999997654
Q ss_pred CCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC--eEE
Q 005352 292 EIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLL 369 (701)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~--~l~ 369 (701)
+.+++|.||...|...+|+|.. .++
T Consensus 138 -----------------------------------------------------~Sv~Tf~gh~~~Iy~a~~sp~~~nlfa 164 (311)
T KOG0277|consen 138 -----------------------------------------------------NSVQTFNGHNSCIYQAAFSPHIPNLFA 164 (311)
T ss_pred -----------------------------------------------------cceEeecCCccEEEEEecCCCCCCeEE
Confidence 4567789999999999999975 999
Q ss_pred EEECCCcEEEEECCCC-eeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcE--EEEecCCCcEEEEEEee
Q 005352 370 SASIDKTVRLWRVGND-HCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHV--VDWVDIRQIVTAVCYRP 446 (701)
Q Consensus 370 s~s~dg~I~iWd~~~~-~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~--~~~~~~~~~i~~i~~sp 446 (701)
++|.|+++++||++.. +.+....|...+.|+.|+..+.+.+++|+.|+.|++||+++-+. ..+.+|.-.|..+.|+|
T Consensus 165 s~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sp 244 (311)
T KOG0277|consen 165 SASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSP 244 (311)
T ss_pred EccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCc
Confidence 9999999999999864 44444448899999999998999999999999999999997653 35678889999999999
Q ss_pred C-CCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeC
Q 005352 447 D-GQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQG 516 (701)
Q Consensus 447 ~-g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~ 516 (701)
. ...|++++.|-+++|||...+.-. ......|..-+.++.|++.++..++.++.|+.++||+.
T Consensus 245 h~~~lLaSasYDmT~riw~~~~~ds~-------~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 245 HHASLLASASYDMTVRIWDPERQDSA-------IETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred chhhHhhhccccceEEecccccchhh-------hhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 5 467889999999999999855432 22234566778999999999999999999999999983
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-23 Score=199.61 Aligned_cols=305 Identities=19% Similarity=0.287 Sum_probs=208.2
Q ss_pred ccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCee----eeeecCCCCCCceeEEeeccCCCcceeeeccc
Q 005352 241 YKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDER----LTEVDIPEIDPSCIYFTVNHLSELKPLFMDKE 316 (701)
Q Consensus 241 ~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (701)
.....|++|.+.|++|+|+.||++|||++.|++|+||++..-.. ......+...+..+.|.++-...+..+. ...
T Consensus 77 l~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~-~g~ 155 (420)
T KOG2096|consen 77 LNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVK-RGN 155 (420)
T ss_pred hhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEc-cCC
Confidence 33456889999999999999999999999999999999976321 1233445557777777776555444443 223
Q ss_pred cceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CC
Q 005352 317 KISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HS 394 (701)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~ 394 (701)
....+.............+ +....++.-..|.-.|..+-...++ +|++++.|.+|.+|++. |+.+..+. ..
T Consensus 156 ~l~vyk~~K~~dG~~~~~~------v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq 228 (420)
T KOG2096|consen 156 KLCVYKLVKKTDGSGSHHF------VHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQ 228 (420)
T ss_pred EEEEEEeeecccCCCCccc------ccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecccc
Confidence 3333333222211100000 0001111223466677777777667 99999999999999998 88887776 44
Q ss_pred CCeEEEEEeeCCCCEEEEEEcCCcEEEEeCC---CC------cEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEEC
Q 005352 395 NYVTCVHFNPVDDNYFISGSIDGKVRIWAVL---SC------HVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNV 465 (701)
Q Consensus 395 ~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~---~~------~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~ 465 (701)
..-+..+.+| +++++++++.---|++|.+- .+ ++..+.+|...|+.++|+++...+++.+.||++++||+
T Consensus 229 ~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdt 307 (420)
T KOG2096|consen 229 SSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDT 307 (420)
T ss_pred ccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeec
Confidence 4566788999 99999999999999999873 22 24467789999999999999999999999999999998
Q ss_pred CCCeeeeeeeEEeec---ccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeec-ccCCCCeEEEEEecCC
Q 005352 466 SDNHLELDAEICVHS---KKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKG-LRRSGNQLSACFTSDG 541 (701)
Q Consensus 466 ~~~~~~~~~~~~~~~---~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~-~~~~~~v~~l~~s~dg 541 (701)
+-....-+....+.. ...........+.++| +++.|++ +....+++|..++....-.. ..|...|.+++|+++|
T Consensus 308 dVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP-~g~~lA~-s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g 385 (420)
T KOG2096|consen 308 DVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSP-SGDSLAV-SFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDG 385 (420)
T ss_pred cceEecCCCchHhhcCCcchhhcCCCceEEEeCC-CCcEEEe-ecCCceEEEEcccCccchhHHHhhcCceeeEEecCCC
Confidence 643211100000000 0111223334799999 5665554 45568899887653322211 2288999999999999
Q ss_pred CEEEEEeCCCcEEEEe
Q 005352 542 KHIVSAGEDSNVYMWN 557 (701)
Q Consensus 542 ~~l~sgs~Dg~I~iWd 557 (701)
++++|++ |..+++..
T Consensus 386 ~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 386 KYIATCG-DRYVRVIR 400 (420)
T ss_pred cEEeeec-ceeeeeec
Confidence 9999997 67888876
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.1e-24 Score=222.61 Aligned_cols=249 Identities=20% Similarity=0.382 Sum_probs=206.9
Q ss_pred CCCcEE---EEEEc-cCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEe
Q 005352 249 HDGSIL---TMKFS-PDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSL 324 (701)
Q Consensus 249 H~~~I~---~l~fs-pdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (701)
|...|. .+..+ |.++||+|||.||.|++|++.......
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~-------------------------------------- 61 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEP-------------------------------------- 61 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCc--------------------------------------
Confidence 444444 44444 467899999999999999986643100
Q ss_pred eecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCC--eeeeeec-CCCCeEEE
Q 005352 325 RRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGND--HCLRVFP-HSNYVTCV 400 (701)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~--~~~~~~~-h~~~V~~l 400 (701)
.......+..|.+.|.++....++ .|+++|.|-+|++|+...+ -|+.++. |.++|.|+
T Consensus 62 ------------------s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcl 123 (735)
T KOG0308|consen 62 ------------------STPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCL 123 (735)
T ss_pred ------------------ccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheee
Confidence 001245567899999999998888 9999999999999999887 5666666 99999999
Q ss_pred EE-eeCCCCEEEEEEcCCcEEEEeCCCCcE--E---------EEe-cCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCC
Q 005352 401 HF-NPVDDNYFISGSIDGKVRIWAVLSCHV--V---------DWV-DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSD 467 (701)
Q Consensus 401 ~f-~p~~~~~l~sgs~dg~v~iwd~~~~~~--~---------~~~-~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~ 467 (701)
++ .+ +..++|+|+.|+.|.+||+.++.. + ... ++...|.+++.++.|..|+.|+..+.+++||.++
T Consensus 124 a~~ak-~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt 202 (735)
T KOG0308|consen 124 AYIAK-NNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRT 202 (735)
T ss_pred eeccc-CceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEecccc
Confidence 99 55 888999999999999999997722 1 122 5678899999999999999999999999999998
Q ss_pred CeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEE
Q 005352 468 NHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSA 547 (701)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sg 547 (701)
.+.... ..+|...|..+..++ ++..+++++.||+|++||+...........|...|.++..+|+-.++++|
T Consensus 203 ~~kimk--------LrGHTdNVr~ll~~d-DGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG 273 (735)
T KOG0308|consen 203 CKKIMK--------LRGHTDNVRVLLVND-DGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSG 273 (735)
T ss_pred ccceee--------eeccccceEEEEEcC-CCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEec
Confidence 775432 236778899999998 89999999999999999999888877777799999999999999999999
Q ss_pred eCCCcEEEEeCCCCCC
Q 005352 548 GEDSNVYMWNCIGHEE 563 (701)
Q Consensus 548 s~Dg~I~iWd~~~~~~ 563 (701)
+.||.|+.=|+.+...
T Consensus 274 ~rd~~i~~Tdl~n~~~ 289 (735)
T KOG0308|consen 274 GRDGNIYRTDLRNPAK 289 (735)
T ss_pred CCCCcEEecccCCchh
Confidence 9999999999998643
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.5e-24 Score=212.62 Aligned_cols=254 Identities=19% Similarity=0.317 Sum_probs=204.4
Q ss_pred cCCCcEEEEEEccCC-CEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeee
Q 005352 248 AHDGSILTMKFSPDG-QYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRR 326 (701)
Q Consensus 248 ~H~~~I~~l~fspdg-~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (701)
-|.+.|+.+.+.|.. .++||++..+.|.|||..+.........
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~------------------------------------ 165 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASG------------------------------------ 165 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccc------------------------------------
Confidence 399999999999965 5677888899999999876431111000
Q ss_pred cCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC--eEEEEECCCcEEEEECCCCee-------eeeec-CCCC
Q 005352 327 TSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHC-------LRVFP-HSNY 396 (701)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~--~l~s~s~dg~I~iWd~~~~~~-------~~~~~-h~~~ 396 (701)
.-.|-..+.||.+.-.+|+|++.. +|++++.|++|++||+..... ...+. |...
T Consensus 166 ----------------~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~ 229 (422)
T KOG0264|consen 166 ----------------ECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDV 229 (422)
T ss_pred ----------------cCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcc
Confidence 015566789999988999999976 999999999999999975433 22233 9999
Q ss_pred eEEEEEeeCCCCEEEEEEcCCcEEEEeCCCC--cEE-EEecCCCcEEEEEEee-CCCeEEEEecCCcEEEEECCCCeeee
Q 005352 397 VTCVHFNPVDDNYFISGSIDGKVRIWAVLSC--HVV-DWVDIRQIVTAVCYRP-DGQGGIVGSMMGDCRFYNVSDNHLEL 472 (701)
Q Consensus 397 V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~--~~~-~~~~~~~~i~~i~~sp-~g~~l~~gs~dg~v~i~d~~~~~~~~ 472 (701)
|..++|+|.+..+|++++.|+.+.|||+++. +.. ....|...|++++|+| ++..||+|+.|++|++||+++....
T Consensus 230 VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~- 308 (422)
T KOG0264|consen 230 VEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKP- 308 (422)
T ss_pred eehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccC-
Confidence 9999999999999999999999999999953 222 4557889999999999 5667888999999999999986542
Q ss_pred eeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccc--------------eeeecccCCCCeEEEEEe
Q 005352 473 DAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVI--------------GKYKGLRRSGNQLSACFT 538 (701)
Q Consensus 473 ~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~--------------~~~~~~~~~~~v~~l~~s 538 (701)
++ ....|...|..+.|+|.....|++++.|+.+.|||+.... ..|...+|...|..++|+
T Consensus 309 -----lh-~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWn 382 (422)
T KOG0264|consen 309 -----LH-TFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWN 382 (422)
T ss_pred -----ce-eccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCC
Confidence 22 2566788999999999999999999999999999986322 235555689999999999
Q ss_pred cCCC-EEEEEeCCCcEEEEeCCC
Q 005352 539 SDGK-HIVSAGEDSNVYMWNCIG 560 (701)
Q Consensus 539 ~dg~-~l~sgs~Dg~I~iWd~~~ 560 (701)
|+.. .|++.++|+.+.||.+..
T Consensus 383 p~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 383 PNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred CCCCeEEEEecCCceEEEeeccc
Confidence 9886 457889999999999873
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.7e-24 Score=202.76 Aligned_cols=295 Identities=16% Similarity=0.240 Sum_probs=236.3
Q ss_pred CceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeE
Q 005352 243 GQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (701)
Q Consensus 243 ~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (701)
.+++.||+..|+.++-......+.+++.|.+.+||.++++.+
T Consensus 141 vre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~C-------------------------------------- 182 (481)
T KOG0300|consen 141 VRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGAC-------------------------------------- 182 (481)
T ss_pred hhhhcccccceeeehhhcCCcceeecccccceeEEeeccccc--------------------------------------
Confidence 356788999999999988778999999999999999999854
Q ss_pred EeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEEC------CC-----------
Q 005352 323 SLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRV------GN----------- 384 (701)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~------~~----------- 384 (701)
+..+.||.+.|.+|+|++.+ ++++++.|++-.||.. ..
T Consensus 183 ------------------------L~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEe 238 (481)
T KOG0300|consen 183 ------------------------LATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEE 238 (481)
T ss_pred ------------------------eeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchh
Confidence 45568999999999999999 9999999999999972 11
Q ss_pred -------------------C----eeeeee-cCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEE-EecCCCcE
Q 005352 385 -------------------D----HCLRVF-PHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD-WVDIRQIV 439 (701)
Q Consensus 385 -------------------~----~~~~~~-~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~-~~~~~~~i 439 (701)
+ .++..+ .|...|.+..|.. .++.+++++.|.+..+||+.++.++. +.+|....
T Consensus 239 E~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~-gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~EL 317 (481)
T KOG0300|consen 239 EEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA-GGQQMVTASWDRTANLWDVETGEVVNILTGHDSEL 317 (481)
T ss_pred hhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc-CcceeeeeeccccceeeeeccCceeccccCcchhc
Confidence 0 012222 2888899999998 89999999999999999999999885 55788899
Q ss_pred EEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCcc
Q 005352 440 TAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV 519 (701)
Q Consensus 440 ~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~ 519 (701)
+.++-+|..+++++.+.|.+.++||++..- ........|...|++..|.. +..+++|+.|.+|++||++++
T Consensus 318 tHcstHptQrLVvTsSrDtTFRLWDFReaI-------~sV~VFQGHtdtVTS~vF~~--dd~vVSgSDDrTvKvWdLrNM 388 (481)
T KOG0300|consen 318 THCSTHPTQRLVVTSSRDTTFRLWDFREAI-------QSVAVFQGHTDTVTSVVFNT--DDRVVSGSDDRTVKVWDLRNM 388 (481)
T ss_pred cccccCCcceEEEEeccCceeEeccchhhc-------ceeeeecccccceeEEEEec--CCceeecCCCceEEEeeeccc
Confidence 999999999999999999999999998432 12233566788999999987 578999999999999999998
Q ss_pred ceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCC
Q 005352 520 IGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKE 599 (701)
Q Consensus 520 ~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 599 (701)
...+...+...+++.++.+..+..|+.--.+..|++||++....+.. .++.
T Consensus 389 RsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRl-----Prts------------------------ 439 (481)
T KOG0300|consen 389 RSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARL-----PRTS------------------------ 439 (481)
T ss_pred cCcceeeecCCccceeEeecCCceEEeccCCceEEEEecCCCccccC-----Cccc------------------------
Confidence 88887777889999999999988999999999999999988764221 0000
Q ss_pred CccccCCCCCCCccccCCCccccCccccccCCCCcccCCCCccC
Q 005352 600 PQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEKL 643 (701)
Q Consensus 600 ~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~~~ 643 (701)
.+. +...+.+.+|..+. ....+++++.|+.+.-|.....
T Consensus 440 Rqg---HrRMV~c~AW~eeh--p~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 440 RQG---HRRMVTCCAWLEEH--PACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred ccc---cceeeeeeeccccC--cccccccccccceeeeeEeccc
Confidence 000 11123333443321 2467889999999999987654
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-23 Score=227.06 Aligned_cols=280 Identities=19% Similarity=0.310 Sum_probs=227.2
Q ss_pred CCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecC
Q 005352 249 HDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTS 328 (701)
Q Consensus 249 H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (701)
|...|.+..|. ..++++++.|++|++|+..++..+
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i------------------------------------------- 241 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLI------------------------------------------- 241 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEE-------------------------------------------
Confidence 67788999998 558999999999999999877522
Q ss_pred CccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCC
Q 005352 329 ESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVD 406 (701)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~ 406 (701)
...+.||.+.|.++++..-+ +|++|+.|.++++||..+++|...+. |.+.|.++...
T Consensus 242 ------------------~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~--- 300 (537)
T KOG0274|consen 242 ------------------LTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID--- 300 (537)
T ss_pred ------------------EeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc---
Confidence 23378999999999998744 99999999999999999999999998 99999999874
Q ss_pred CCEEEEEEcCCcEEEEeCCCCcEEEEec-CCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCC
Q 005352 407 DNYFISGSIDGKVRIWAVLSCHVVDWVD-IRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAP 485 (701)
Q Consensus 407 ~~~l~sgs~dg~v~iwd~~~~~~~~~~~-~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~ 485 (701)
+.++++|+.|.+|++|++.+++.+.... |..+|.++.++ +.++++|+.|++|++||+.+.++... ...|
T Consensus 301 ~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~s--------l~gH 370 (537)
T KOG0274|consen 301 PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKS--------LSGH 370 (537)
T ss_pred CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeee--------ecCC
Confidence 4788899999999999999999998887 99999999998 78999999999999999997765432 3458
Q ss_pred CCCeeEEEEecCCCCEEEEEECCCcEEEEeCCcc-ceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCCC
Q 005352 486 CKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV-IGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEP 564 (701)
Q Consensus 486 ~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~-~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~ 564 (701)
...|.++.+.+ . ..+++|+.|+.|++||+.+. ........|..-+..+.+ .+++|++++.|+.|++||..+++..
T Consensus 371 ~~~V~sl~~~~-~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~ 446 (537)
T KOG0274|consen 371 TGRVYSLIVDS-E-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECL 446 (537)
T ss_pred cceEEEEEecC-c-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEeccccccEEEeecccCcee
Confidence 89999998865 2 89999999999999999988 666666667777755544 6789999999999999999888732
Q ss_pred CccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCCcccCCCCccCC
Q 005352 565 AHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEKLP 644 (701)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~~~~ 644 (701)
.. ++.- ....+..+++. ...+++.+.++.+++|+.+.+.
T Consensus 447 ~~--------~~~~---------------------------~~~~v~~l~~~------~~~il~s~~~~~~~l~dl~~~~ 485 (537)
T KOG0274|consen 447 RT--------LEGR---------------------------HVGGVSALALG------KEEILCSSDDGSVKLWDLRSGT 485 (537)
T ss_pred ee--------eccC---------------------------CcccEEEeecC------cceEEEEecCCeeEEEecccCc
Confidence 11 1000 11122222222 2456777899999999998888
Q ss_pred CCccc
Q 005352 645 ALSQL 649 (701)
Q Consensus 645 ~~~~~ 649 (701)
++..+
T Consensus 486 ~~~~l 490 (537)
T KOG0274|consen 486 LIRTL 490 (537)
T ss_pred hhhhh
Confidence 77665
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-23 Score=217.99 Aligned_cols=392 Identities=17% Similarity=0.199 Sum_probs=266.9
Q ss_pred ccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCC---EEEEEeCCCcEEEEEeecCeeeeeecCCCC
Q 005352 217 MFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQ---YLASAGDDGVVRLWQVVEDERLTEVDIPEI 293 (701)
Q Consensus 217 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~---~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~ 293 (701)
+.|+.+..|.++.-.. .......++.||.+.|.+|+|...+. +|||+|.|..||||.+.-+.......-...
T Consensus 163 a~Ggs~~~v~~~s~~~-----d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~ 237 (764)
T KOG1063|consen 163 ACGGSKFVVDLYSSSA-----DSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDS 237 (764)
T ss_pred EecCcceEEEEeccCC-----cceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccc
Confidence 3467777788875431 13334468899999999999987544 899999999999999865432111000000
Q ss_pred CCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEE
Q 005352 294 DPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSAS 372 (701)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s 372 (701)
. ....+ ... +... ..-.+++ ..-..+.||.+.|.++.|+|.+ .|+++|
T Consensus 238 ~----t~~~~-------------~~~-f~~l-----------~~i~~~i--s~eall~GHeDWV~sv~W~p~~~~LLSAS 286 (764)
T KOG1063|consen 238 L----TTLSN-------------LPV-FMIL-----------EEIQYRI--SFEALLMGHEDWVYSVWWHPEGLDLLSAS 286 (764)
T ss_pred c----ccccC-------------Cce-eeee-----------eeEEEEE--ehhhhhcCcccceEEEEEccchhhheecc
Confidence 0 00000 000 0000 0000000 0112346999999999999999 999999
Q ss_pred CCCcEEEEECCCCe--eeeee--c----CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCc----EEEEecCCCcEE
Q 005352 373 IDKTVRLWRVGNDH--CLRVF--P----HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH----VVDWVDIRQIVT 440 (701)
Q Consensus 373 ~dg~I~iWd~~~~~--~~~~~--~----h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~----~~~~~~~~~~i~ 440 (701)
.|+++.+|...+.. -+... . .........|+| +++.+++-+.-|..++|...... .....+|-..|+
T Consensus 287 aDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~-n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~ 365 (764)
T KOG1063|consen 287 ADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSP-NSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVK 365 (764)
T ss_pred cCcceEEEecCCccceEEEEEEeecccccccceeeEEEcC-CCCEEEEecccCcEEEEeccCccceeeccccccccccce
Confidence 99999999876552 22222 2 244578899999 99999999999999999843322 223457888999
Q ss_pred EEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCc--
Q 005352 441 AVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN-- 518 (701)
Q Consensus 441 ~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~-- 518 (701)
.++|+|.|.+|++.+.|.+-|+|---..+.. ..-......|...++|+++.+ ....+++|.....+|+|+...
T Consensus 366 dv~W~psGeflLsvs~DQTTRlFa~wg~q~~----wHEiaRPQiHGyDl~c~~~vn-~~~~FVSgAdEKVlRvF~aPk~f 440 (764)
T KOG1063|consen 366 DVDWDPSGEFLLSVSLDQTTRLFARWGRQQE----WHEIARPQIHGYDLTCLSFVN-EDLQFVSGADEKVLRVFEAPKSF 440 (764)
T ss_pred eeeecCCCCEEEEeccccceeeecccccccc----eeeecccccccccceeeehcc-CCceeeecccceeeeeecCcHHH
Confidence 9999999999999999999999876533322 222234566788999999998 467788888888999997321
Q ss_pred --------------------------------------------------------------------------cceeee
Q 005352 519 --------------------------------------------------------------------------VIGKYK 524 (701)
Q Consensus 519 --------------------------------------------------------------------------~~~~~~ 524 (701)
.....+
T Consensus 441 v~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~K 520 (764)
T KOG1063|consen 441 VKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHK 520 (764)
T ss_pred HHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHH
Confidence 000112
Q ss_pred cccCCCCeEEEEEecCCCEEEEEeCCC-----cEEEEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCC
Q 005352 525 GLRRSGNQLSACFTSDGKHIVSAGEDS-----NVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKE 599 (701)
Q Consensus 525 ~~~~~~~v~~l~~s~dg~~l~sgs~Dg-----~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 599 (701)
..+|...|++++.+|+|++|||++... .|++|+..+-.+.
T Consensus 521 LYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~----------------------------------- 565 (764)
T KOG1063|consen 521 LYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQV----------------------------------- 565 (764)
T ss_pred hccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhh-----------------------------------
Confidence 345788899999999999999997543 4889987664421
Q ss_pred CccccCCCCCCCccccCCCccccCccccccCCCCcccCCCCccCCCCccccccccchhhhhhhhhcccccccccCCCccE
Q 005352 600 PQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLV 679 (701)
Q Consensus 600 ~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 679 (701)
+....+.-.++.++|||+ +..+.+.+.|+++.+|...+... ..+. -.-.+.|..-||...++++ ++.
T Consensus 566 -~~L~~HsLTVT~l~FSpd----g~~LLsvsRDRt~sl~~~~~~~~-~e~~------fa~~k~HtRIIWdcsW~pd-e~~ 632 (764)
T KOG1063|consen 566 -QELEGHSLTVTRLAFSPD----GRYLLSVSRDRTVSLYEVQEDIK-DEFR------FACLKAHTRIIWDCSWSPD-EKY 632 (764)
T ss_pred -heecccceEEEEEEECCC----CcEEEEeecCceEEeeeeecccc-hhhh------hccccccceEEEEcccCcc-cce
Confidence 111122335778999998 88899999999999998633221 1111 0012333567888889999 999
Q ss_pred EEEecCCCeEeEEeecCCC
Q 005352 680 IVTAGWDGRIRSFLNYGLP 698 (701)
Q Consensus 680 ivTgg~DG~Irvw~~~g~p 698 (701)
+|||+.|..+++|..-..|
T Consensus 633 FaTaSRDK~VkVW~~~~~~ 651 (764)
T KOG1063|consen 633 FATASRDKKVKVWEEPDLR 651 (764)
T ss_pred eEEecCCceEEEEeccCch
Confidence 9999999999999754443
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-22 Score=202.87 Aligned_cols=376 Identities=16% Similarity=0.227 Sum_probs=261.5
Q ss_pred eeeecCccccccccccceEEEEEccCccchh-hhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeee
Q 005352 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRSKEL-SALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERL 285 (701)
Q Consensus 207 ~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~-~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~ 285 (701)
..+.+.+..++.....+.+..|+..+..... ..++.. ..+.-|.||+|.++|+ ++||..+|.|.||+..+.+..
T Consensus 206 a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek----~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~ 280 (626)
T KOG2106|consen 206 ATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEK----REKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRIS 280 (626)
T ss_pred EEeccCCCcEEEEeCCceEEEEEccCCceEEEeecccc----ccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEE
Confidence 4677888888887788999999876543211 112211 1236799999999995 689999999999998655322
Q ss_pred eeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecC
Q 005352 286 TEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN 365 (701)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~ 365 (701)
+....|.+.|.+++...+
T Consensus 281 --------------------------------------------------------------k~~~aH~ggv~~L~~lr~ 298 (626)
T KOG2106|consen 281 --------------------------------------------------------------KQVHAHDGGVFSLCMLRD 298 (626)
T ss_pred --------------------------------------------------------------eEeeecCCceEEEEEecC
Confidence 122268888888888888
Q ss_pred CeEEEEECCCcEEEEEC-----------------------------------------CCCeeeeeecCCCCeEEEEEee
Q 005352 366 NYLLSASIDKTVRLWRV-----------------------------------------GNDHCLRVFPHSNYVTCVHFNP 404 (701)
Q Consensus 366 ~~l~s~s~dg~I~iWd~-----------------------------------------~~~~~~~~~~h~~~V~~l~f~p 404 (701)
|.|++|+.|..|..||- +++-.+..+.|......++.+|
T Consensus 299 GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hp 378 (626)
T KOG2106|consen 299 GTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHP 378 (626)
T ss_pred ccEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCC
Confidence 87777888888888873 1111222233777788899999
Q ss_pred CCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCC
Q 005352 405 VDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKA 484 (701)
Q Consensus 405 ~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~ 484 (701)
+.+.|++++.|+.+++|+ ..++.-......+..++.|+|.| .+++|+..|...+.|.++..+... +..
T Consensus 379 -s~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~--------~~d 446 (626)
T KOG2106|consen 379 -SKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTI--------HTD 446 (626)
T ss_pred -ChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEE--------Eec
Confidence 889999999999999999 55566555667899999999999 999999999999999988554321 111
Q ss_pred CCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecc--cCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 485 PCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGL--RRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 485 ~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~--~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
..+++.+.|+| ++.+|++|+.|+.|+||.+......+... -+..+|+.+.|++|+++|.+-+.|-.|..|....-
T Consensus 447 -~~~ls~v~ysp-~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~- 523 (626)
T KOG2106|consen 447 -NEQLSVVRYSP-DGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSEC- 523 (626)
T ss_pred -CCceEEEEEcC-CCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccC-
Confidence 57899999999 89999999999999999887554444332 24489999999999999999999999999943222
Q ss_pred CCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCCcccCCCCcc
Q 005352 563 EPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEK 642 (701)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~~ 642 (701)
++....+.+++....+.+.+---|. .+...+..++.+.. ...++++-..+.++++.
T Consensus 524 ----~~~ts~kDvkW~t~~c~lGF~v~g~-------------s~~t~i~a~~rs~~----~~~lA~gdd~g~v~lf~--- 579 (626)
T KOG2106|consen 524 ----KQITSVKDVKWATYTCTLGFEVFGG-------------SDGTDINAVARSHC----EKLLASGDDFGKVHLFS--- 579 (626)
T ss_pred ----cccceecceeeeeeEEEEEEEEecc-------------cCCchHHHhhhhhh----hhhhhccccCceEEEEc---
Confidence 2223366666666666665443331 11222333333332 23334444455566543
Q ss_pred CCCCccccccccchhhhhhhhhcccccccccCCCccEEEEecCCCeEeEEee
Q 005352 643 LPALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFLN 694 (701)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivTgg~DG~Irvw~~ 694 (701)
.|+.+.- + ....|.-+.+.+.+++|... ..++.|.|.|-.|-.|+.
T Consensus 580 yPc~s~r-A----~~he~~ghs~~vt~V~Fl~~-d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 580 YPCSSPR-A----PSHEYGGHSSHVTNVAFLCK-DSHLISTGKDTSIMQWRL 625 (626)
T ss_pred cccCCCc-c----cceeeccccceeEEEEEeeC-CceEEecCCCceEEEEEe
Confidence 2322211 0 11133444667888899988 555556669999999974
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.9e-23 Score=209.52 Aligned_cols=228 Identities=21% Similarity=0.317 Sum_probs=191.2
Q ss_pred eeeecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccC-CCEEEEEeCCCcEEEEEeecCeee
Q 005352 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPD-GQYLASAGDDGVVRLWQVVEDERL 285 (701)
Q Consensus 207 ~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~I~iWd~~~~~~~ 285 (701)
.+++.++..+++|...|.|+|+|.+.+ ... +.+++|+.+|..+.|+|+ ++.|++|+.|+.+++||+.+..
T Consensus 74 ~~fR~DG~LlaaGD~sG~V~vfD~k~r--~iL-----R~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~-- 144 (487)
T KOG0310|consen 74 VDFRSDGRLLAAGDESGHVKVFDMKSR--VIL-----RQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY-- 144 (487)
T ss_pred EEeecCCeEEEccCCcCcEEEeccccH--HHH-----HHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE--
Confidence 456677888888999999999995431 111 347789999999999995 6678899999999999998753
Q ss_pred eeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecC
Q 005352 286 TEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN 365 (701)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~ 365 (701)
....+.+|++.|.|.+|+|.
T Consensus 145 ------------------------------------------------------------v~~~l~~htDYVR~g~~~~~ 164 (487)
T KOG0310|consen 145 ------------------------------------------------------------VQAELSGHTDYVRCGDISPA 164 (487)
T ss_pred ------------------------------------------------------------EEEEecCCcceeEeeccccC
Confidence 13356899999999999997
Q ss_pred C--eEEEEECCCcEEEEECCCC-eeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCC-cEE-EEecCCCcEE
Q 005352 366 N--YLLSASIDKTVRLWRVGND-HCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSC-HVV-DWVDIRQIVT 440 (701)
Q Consensus 366 ~--~l~s~s~dg~I~iWd~~~~-~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~-~~~-~~~~~~~~i~ 440 (701)
+ .++|||.||+|++||++.. ..+..+.|..+|..+.+-| .+..|++++ ...|++||+.++ +.+ ....|...|+
T Consensus 165 ~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lp-sgs~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVT 242 (487)
T KOG0310|consen 165 NDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALP-SGSLIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVT 242 (487)
T ss_pred CCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcC-CCCEEEEcC-CCeEEEEEecCCceehhhhhcccceEE
Confidence 6 8999999999999999987 7888899999999999999 889999987 568999999955 444 3445999999
Q ss_pred EEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEe
Q 005352 441 AVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQ 515 (701)
Q Consensus 441 ~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd 515 (701)
|+++..+++.|++|+-|+.+++||+.+.+...... ..++|.+++.+| +++.+++|..+|.+.+-+
T Consensus 243 cL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~---------~~~pvLsiavs~-dd~t~viGmsnGlv~~rr 307 (487)
T KOG0310|consen 243 CLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK---------YPGPVLSIAVSP-DDQTVVIGMSNGLVSIRR 307 (487)
T ss_pred EEEeecCCceEeecccccceEEEEccceEEEEeee---------cccceeeEEecC-CCceEEEecccceeeeeh
Confidence 99999999999999999999999987766543222 237899999999 789999999999988874
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.3e-23 Score=207.28 Aligned_cols=328 Identities=18% Similarity=0.239 Sum_probs=241.1
Q ss_pred HHHhhccchhhHHHHHHhHHhhhccceeeecccCcceeeecCcccccc------ccccceEEEEEccCccchhhhcccCc
Q 005352 171 IVEKESSAAGKAERVKKRWFSRLRSLACVVDKQGEGERVRLNEEDAMF------CSKVQRVKVYHCKKRSKELSALYKGQ 244 (701)
Q Consensus 171 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~d~~v~vw~~~~~~~~~~~~~~~~ 244 (701)
.....+++.+|++|+++.|+.+++...- ....+-.+.++.++. .-..|+++-.-..+-. .......+
T Consensus 64 ~e~~~Eta~ekr~RlA~e~L~~i~e~~E-----~~~d~~~~~~e~va~rLked~le~~Gr~~r~~a~~v~--~~~s~~~~ 136 (479)
T KOG0299|consen 64 DEFEEETAGEKRLRLAEEYLDEIREIEE-----DNFDADDLDDELVASRLKEDVLEQSGRVRRLVADKVQ--APESSDFR 136 (479)
T ss_pred ccchhcchhHHHHHHHHHHHHHHHhhhh-----cccccchhhHHHHHHHHHHHHHHhcceeehhhhhhcc--ccccccce
Confidence 3445678889999999999999962111 001111111111111 1122333332222111 11111135
Q ss_pred eeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEe
Q 005352 245 EIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSL 324 (701)
Q Consensus 245 ~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (701)
.+..|.-+|.+|+++|++.+.++++.||+|.-|++.+++...-+-... .+
T Consensus 137 ~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~--------------ev---------------- 186 (479)
T KOG0299|consen 137 VIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERD--------------EV---------------- 186 (479)
T ss_pred eeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccc--------------hh----------------
Confidence 677899999999999999999999999999999999886432111000 00
Q ss_pred eecCCccEEEcCCccccccCCCeEEE-cCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEE
Q 005352 325 RRTSESACVVFPPKVFRILEKPLHEF-HGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVH 401 (701)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~ 401 (701)
......+...- .+|...|.+++.++++ +|++|+.|..|.||+.++.+.++.+. |.+.|.+++
T Consensus 187 ---------------~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~ 251 (479)
T KOG0299|consen 187 ---------------LKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLA 251 (479)
T ss_pred ---------------hhhccCCCCcccccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeee
Confidence 00000111111 4899999999999999 99999999999999999999999987 999999999
Q ss_pred EeeCCCCEEEEEEcCCcEEEEeCCCCcEE-EEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeec
Q 005352 402 FNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHS 480 (701)
Q Consensus 402 f~p~~~~~l~sgs~dg~v~iwd~~~~~~~-~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~ 480 (701)
|-. ..+.+++++.|++|++|++.....+ ..++|+..|..|....-++.+-+|+.|.++++|++......
T Consensus 252 fr~-gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesql--------- 321 (479)
T KOG0299|consen 252 FRK-GTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQL--------- 321 (479)
T ss_pred eec-CccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEecccccee---------
Confidence 997 7788999999999999999877666 67899999999999888888889999999999999654322
Q ss_pred ccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecc------------cCCCCeEEEEEecCCCEEEEEe
Q 005352 481 KKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGL------------RRSGNQLSACFTSDGKHIVSAG 548 (701)
Q Consensus 481 ~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~------------~~~~~v~~l~~s~dg~~l~sgs 548 (701)
....+...+.|++|.. ..++++|+.+|.|.+|++.+....|... .+...|++++..|...++++|+
T Consensus 322 ifrg~~~sidcv~~In--~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS 399 (479)
T KOG0299|consen 322 IFRGGEGSIDCVAFIN--DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGS 399 (479)
T ss_pred eeeCCCCCeeeEEEec--ccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecC
Confidence 1334567899999986 6899999999999999987655544321 1223799999999999999999
Q ss_pred CCCcEEEEeCCCCC
Q 005352 549 EDSNVYMWNCIGHE 562 (701)
Q Consensus 549 ~Dg~I~iWd~~~~~ 562 (701)
.+|.|++|.+..+-
T Consensus 400 ~~G~vrLW~i~~g~ 413 (479)
T KOG0299|consen 400 WSGCVRLWKIEDGL 413 (479)
T ss_pred CCCceEEEEecCCc
Confidence 99999999998874
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-23 Score=224.20 Aligned_cols=245 Identities=20% Similarity=0.291 Sum_probs=193.8
Q ss_pred cccCcc--eeeecCccccccccccceEEEEEccCc----------------------------cc--------------h
Q 005352 201 DKQGEG--ERVRLNEEDAMFCSKVQRVKVYHCKKR----------------------------SK--------------E 236 (701)
Q Consensus 201 ~~~~~~--~~~~~~~~~~~~~~~d~~v~vw~~~~~----------------------------~~--------------~ 236 (701)
.|++.+ ..|+.++.++|+|+.|+.|+||.+... .. +
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 455555 567888999999999999999998540 00 0
Q ss_pred hhh-----------cccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccC
Q 005352 237 LSA-----------LYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHL 305 (701)
Q Consensus 237 ~~~-----------~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (701)
... -.+.+++.||.+.|..|.||.++ +|+|++.|.+||+|++...+++..|
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F----------------- 406 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVF----------------- 406 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEE-----------------
Confidence 000 01234678999999999999875 9999999999999999877655433
Q ss_pred CCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC--eEEEEECCCcEEEEECC
Q 005352 306 SELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLSASIDKTVRLWRVG 383 (701)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~--~l~s~s~dg~I~iWd~~ 383 (701)
.|.+-|+|++|+|-+ ||++|+-|+.||||++.
T Consensus 407 ----------------------------------------------~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~ 440 (712)
T KOG0283|consen 407 ----------------------------------------------SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSIS 440 (712)
T ss_pred ----------------------------------------------ecCCeeEEEEecccCCCcEeecccccceEEeecC
Confidence 399999999999965 99999999999999999
Q ss_pred CCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEec---C------CCcEEEEEEeeC-CCeEEE
Q 005352 384 NDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVD---I------RQIVTAVCYRPD-GQGGIV 453 (701)
Q Consensus 384 ~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~---~------~~~i~~i~~sp~-g~~l~~ 453 (701)
..+.+.-.....-|++++|.| +|++.+.|+.+|.+++|++...+...... + ...|+.+.|.|. ...+++
T Consensus 441 d~~Vv~W~Dl~~lITAvcy~P-dGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLV 519 (712)
T KOG0283|consen 441 DKKVVDWNDLRDLITAVCYSP-DGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLV 519 (712)
T ss_pred cCeeEeehhhhhhheeEEecc-CCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEE
Confidence 998887777779999999999 99999999999999999998877653221 1 236999999984 346999
Q ss_pred EecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCC
Q 005352 454 GSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP 517 (701)
Q Consensus 454 gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~ 517 (701)
.+.|..|+|||.++..+....+- ......-....|.. ++++|++++.|..|+||+..
T Consensus 520 TSnDSrIRI~d~~~~~lv~KfKG------~~n~~SQ~~Asfs~-Dgk~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 520 TSNDSRIRIYDGRDKDLVHKFKG------FRNTSSQISASFSS-DGKHIVSASEDSWVYIWKND 576 (712)
T ss_pred ecCCCceEEEeccchhhhhhhcc------cccCCcceeeeEcc-CCCEEEEeecCceEEEEeCC
Confidence 99999999999987665432211 11122334567888 89999999999999999975
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.8e-24 Score=211.76 Aligned_cols=282 Identities=17% Similarity=0.265 Sum_probs=225.2
Q ss_pred cCcceeeecCc-cccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeec
Q 005352 203 QGEGERVRLNE-EDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVE 281 (701)
Q Consensus 203 ~~~~~~~~~~~-~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~ 281 (701)
..-++++..+. ...+..+..|-|||||+........... -....-..-|.+++..|||+.|++||+-.++.|||+..
T Consensus 419 GEvVcAvtIS~~trhVyTgGkgcVKVWdis~pg~k~Pvsq--Ldcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAa 496 (705)
T KOG0639|consen 419 GEVVCAVTISNPTRHVYTGGKGCVKVWDISQPGNKSPVSQ--LDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAA 496 (705)
T ss_pred CcEEEEEEecCCcceeEecCCCeEEEeeccCCCCCCcccc--ccccCcccceeeeEecCCCceEEeccccceeeeeeccC
Confidence 33344444332 3445555678899999965432211110 01223467899999999999999999999999999977
Q ss_pred CeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEE
Q 005352 282 DERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLS 361 (701)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~ 361 (701)
....- ...+..-.....+++
T Consensus 497 pTpri------------------------------------------------------------kaeltssapaCyALa 516 (705)
T KOG0639|consen 497 PTPRI------------------------------------------------------------KAELTSSAPACYALA 516 (705)
T ss_pred CCcch------------------------------------------------------------hhhcCCcchhhhhhh
Confidence 53211 011222234567889
Q ss_pred EecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcE
Q 005352 362 WSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIV 439 (701)
Q Consensus 362 ~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i 439 (701)
.+||. ..+++..||.|.|||+.+...++.|+ |.+.+.||.+++ ++..|.+|+.|++||.||++.++.+...+....|
T Consensus 517 ~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~-dGtklWTGGlDntvRcWDlregrqlqqhdF~SQI 595 (705)
T KOG0639|consen 517 ISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISK-DGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQI 595 (705)
T ss_pred cCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecC-CCceeecCCCccceeehhhhhhhhhhhhhhhhhh
Confidence 99998 88899999999999999999999998 999999999999 9999999999999999999999988888888999
Q ss_pred EEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCcc
Q 005352 440 TAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV 519 (701)
Q Consensus 440 ~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~ 519 (701)
.++.++|++.++++|-.++.+.+......+... ...|..-|.++.|.+ -++++++.+.|+.+..|...-.
T Consensus 596 fSLg~cP~~dWlavGMens~vevlh~skp~kyq---------lhlheScVLSlKFa~-cGkwfvStGkDnlLnawrtPyG 665 (705)
T KOG0639|consen 596 FSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQ---------LHLHESCVLSLKFAY-CGKWFVSTGKDNLLNAWRTPYG 665 (705)
T ss_pred eecccCCCccceeeecccCcEEEEecCCcccee---------ecccccEEEEEEecc-cCceeeecCchhhhhhccCccc
Confidence 999999999999999999999998877543221 233557799999999 7999999999999999998877
Q ss_pred ceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 005352 520 IGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNC 558 (701)
Q Consensus 520 ~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~ 558 (701)
...|... ...+|.++.++.|.+||+||+.|....+|.+
T Consensus 666 asiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 666 ASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred cceeecc-ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 7777764 5688999999999999999999999888875
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.4e-24 Score=193.73 Aligned_cols=249 Identities=21% Similarity=0.327 Sum_probs=200.4
Q ss_pred ccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeee
Q 005352 247 QAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRR 326 (701)
Q Consensus 247 ~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (701)
..|+..|..+...-.|+.||||+.|++|+|+.+..+...
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s----------------------------------------- 46 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQS----------------------------------------- 46 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCc-----------------------------------------
Confidence 469999999988888999999999999999999876411
Q ss_pred cCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEec--CC-eEEEEECCCcEEEEECCCCeeeeeec---CCCCeEEE
Q 005352 327 TSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK--NN-YLLSASIDKTVRLWRVGNDHCLRVFP---HSNYVTCV 400 (701)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~--~~-~l~s~s~dg~I~iWd~~~~~~~~~~~---h~~~V~~l 400 (701)
+++.++.||.++|..++|.. -| +|++++.||.|.||.-.+++-.+... |...|+++
T Consensus 47 ------------------~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV 108 (299)
T KOG1332|consen 47 ------------------KLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSV 108 (299)
T ss_pred ------------------eeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceee
Confidence 45678899999999999976 45 99999999999999988885444433 89999999
Q ss_pred EEeeCC-CCEEEEEEcCCcEEEEeCCCC-c---EEEEecCCCcEEEEEEeeC---C-----------CeEEEEecCCcEE
Q 005352 401 HFNPVD-DNYFISGSIDGKVRIWAVLSC-H---VVDWVDIRQIVTAVCYRPD---G-----------QGGIVGSMMGDCR 461 (701)
Q Consensus 401 ~f~p~~-~~~l~sgs~dg~v~iwd~~~~-~---~~~~~~~~~~i~~i~~sp~---g-----------~~l~~gs~dg~v~ 461 (701)
+|.|.. +-.|++++.||.|.|.+.+.. . ......|.-.+++++|.|. | +.|++|+.|..|+
T Consensus 109 ~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~Vk 188 (299)
T KOG1332|consen 109 AWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVK 188 (299)
T ss_pred cccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCcccee
Confidence 999933 456889999999999988765 2 1234567888999999995 4 5699999999999
Q ss_pred EEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCC---CCEEEEEECCCcEEEEeCCccceeee---cccCCCCeEEE
Q 005352 462 FYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQD---SSKVMVSCADSQVRILQGPNVIGKYK---GLRRSGNQLSA 535 (701)
Q Consensus 462 i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~---~~~l~~~s~dg~I~iwd~~~~~~~~~---~~~~~~~v~~l 535 (701)
||+........+. ....|...+..++|+|.. ...|++++.||+|.||.........+ .......+..+
T Consensus 189 iW~~~~~~w~~e~------~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~v 262 (299)
T KOG1332|consen 189 IWKFDSDSWKLER------TLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRV 262 (299)
T ss_pred eeecCCcchhhhh------hhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEE
Confidence 9999987543322 245677889999999954 35899999999999998763222211 12245679999
Q ss_pred EEecCCCEEEEEeCCCcEEEEeCCC
Q 005352 536 CFTSDGKHIVSAGEDSNVYMWNCIG 560 (701)
Q Consensus 536 ~~s~dg~~l~sgs~Dg~I~iWd~~~ 560 (701)
+||..|+.|+.++.|+.|.+|.-+.
T Consensus 263 SWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 263 SWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred EEeccccEEEEecCCcEEEEEEeCC
Confidence 9999999999999999999997543
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.8e-24 Score=224.12 Aligned_cols=299 Identities=16% Similarity=0.223 Sum_probs=224.8
Q ss_pred cccCcceeeecCccc-cccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEcc-CCCEEEEEeCCCcEEEEE
Q 005352 201 DKQGEGERVRLNEED-AMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSP-DGQYLASAGDDGVVRLWQ 278 (701)
Q Consensus 201 ~~~~~~~~~~~~~~~-~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~I~iWd 278 (701)
+.+..+++++.+.+. -+........+||..........-......-+.-.-.+..++|.. +.++|||++..|.|.+||
T Consensus 37 ~~k~~~nAIs~nr~~~qiv~AGrs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWd 116 (839)
T KOG0269|consen 37 KLKAKANAISVNRDINQIVVAGRSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWD 116 (839)
T ss_pred ecccccceEeecCCcceeEEecccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEe
Confidence 344555666655442 233444566788877554433221111000011112455677864 467999999999999999
Q ss_pred eecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeE
Q 005352 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEIL 358 (701)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~ 358 (701)
+.... .++.+..|..|...|.
T Consensus 117 lnk~~-----------------------------------------------------------rnk~l~~f~EH~Rs~~ 137 (839)
T KOG0269|consen 117 LNKSI-----------------------------------------------------------RNKLLTVFNEHERSAN 137 (839)
T ss_pred cCccc-----------------------------------------------------------cchhhhHhhhhcccee
Confidence 96521 0145667788999999
Q ss_pred EEEEecCC--eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEE--EEe
Q 005352 359 DLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV--DWV 433 (701)
Q Consensus 359 ~l~~s~~~--~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~--~~~ 433 (701)
++.|++.. +|++||.||+|++||++..+...++. ....|..++|+|..+++|+++...|.+++||++..... ++.
T Consensus 138 ~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~ 217 (839)
T KOG0269|consen 138 KLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLT 217 (839)
T ss_pred eeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhh
Confidence 99999976 99999999999999999988887776 66789999999988999999999999999999976533 677
Q ss_pred cCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEEC--CCcE
Q 005352 434 DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCA--DSQV 511 (701)
Q Consensus 434 ~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~--dg~I 511 (701)
.|.++|.++.|+|++.+||+|+.|+.|+|||+.+........+ ....++..+.|-|....+|++++. |-.|
T Consensus 218 AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tI-------nTiapv~rVkWRP~~~~hLAtcsmv~dtsV 290 (839)
T KOG0269|consen 218 AHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTI-------NTIAPVGRVKWRPARSYHLATCSMVVDTSV 290 (839)
T ss_pred cccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEE-------eecceeeeeeeccCccchhhhhhccccceE
Confidence 8999999999999999999999999999999987654322211 123678999999987778888775 8899
Q ss_pred EEEeCCcccee-eecccCCCCeEEEEEec-CCCEEEEEeCCCcEEEEeCCCCCCCC
Q 005352 512 RILQGPNVIGK-YKGLRRSGNQLSACFTS-DGKHIVSAGEDSNVYMWNCIGHEEPA 565 (701)
Q Consensus 512 ~iwd~~~~~~~-~~~~~~~~~v~~l~~s~-dg~~l~sgs~Dg~I~iWd~~~~~~~~ 565 (701)
+|||++...-. .....|...++.++|.. |-..|.+++.||.|..-.+++...+.
T Consensus 291 ~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat~pi 346 (839)
T KOG0269|consen 291 HVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNATTPI 346 (839)
T ss_pred EEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhcccChh
Confidence 99999854433 34455899999999965 45678999999999888777765443
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.6e-24 Score=220.13 Aligned_cols=280 Identities=16% Similarity=0.258 Sum_probs=227.6
Q ss_pred cCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecC
Q 005352 211 LNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDI 290 (701)
Q Consensus 211 ~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~ 290 (701)
+++.++.+|++|+.|++|+......++...+ ...++.|...|..|....+|+.|++++.|-+|++|+...+..
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~-~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~------ 107 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPY-IASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNT------ 107 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccch-hhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcc------
Confidence 3455689999999999999876554433332 346788999999999999999999999999999999876520
Q ss_pred CCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEE-ecCC-eE
Q 005352 291 PEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSW-SKNN-YL 368 (701)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~-s~~~-~l 368 (701)
-.+.++..|++-|.|+++ .++. .+
T Consensus 108 ------------------------------------------------------~c~stir~H~DYVkcla~~ak~~~lv 133 (735)
T KOG0308|consen 108 ------------------------------------------------------FCMSTIRTHKDYVKCLAYIAKNNELV 133 (735)
T ss_pred ------------------------------------------------------hhHhhhhcccchheeeeecccCceeE
Confidence 123455679999999999 6666 99
Q ss_pred EEEECCCcEEEEECCCC--eeeeee----------cCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCc-EEEEecC
Q 005352 369 LSASIDKTVRLWRVGND--HCLRVF----------PHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH-VVDWVDI 435 (701)
Q Consensus 369 ~s~s~dg~I~iWd~~~~--~~~~~~----------~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~-~~~~~~~ 435 (701)
++|+-|+.|.+||++++ +.+..+ .+...|++++.++ ++..|++|+..+.+++||.++++ ++++.+|
T Consensus 134 aSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~-t~t~ivsGgtek~lr~wDprt~~kimkLrGH 212 (735)
T KOG0308|consen 134 ASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQ-TGTIIVSGGTEKDLRLWDPRTCKKIMKLRGH 212 (735)
T ss_pred EecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCC-cceEEEecCcccceEEeccccccceeeeecc
Confidence 99999999999999987 333333 2677899999999 88999999999999999999886 4578899
Q ss_pred CCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEe
Q 005352 436 RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQ 515 (701)
Q Consensus 436 ~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd 515 (701)
...|..+..++||+.+++++.||+|++||+...++... ...|...+.+++.+| +-.++++|+.|+.|..=|
T Consensus 213 TdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T--------~~vH~e~VWaL~~~~-sf~~vYsG~rd~~i~~Td 283 (735)
T KOG0308|consen 213 TDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLAT--------YIVHKEGVWALQSSP-SFTHVYSGGRDGNIYRTD 283 (735)
T ss_pred ccceEEEEEcCCCCeEeecCCCceEEeeeccccceeee--------EEeccCceEEEeeCC-CcceEEecCCCCcEEecc
Confidence 99999999999999999999999999999988776544 223446699999998 789999999999999999
Q ss_pred CCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 005352 516 GPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGH 561 (701)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~ 561 (701)
+++............+|..+..+...+-+-+++.|+.|+-|...-.
T Consensus 284 l~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~ 329 (735)
T KOG0308|consen 284 LRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPD 329 (735)
T ss_pred cCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCccc
Confidence 9875444444446677888877765555677788999999986543
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-22 Score=211.66 Aligned_cols=323 Identities=18% Similarity=0.254 Sum_probs=221.3
Q ss_pred cccccccccceEEEEEccCccch--------------hhhcccC----------ceeccCCCcEEEEEEccCCCEEEEEe
Q 005352 214 EDAMFCSKVQRVKVYHCKKRSKE--------------LSALYKG----------QEIQAHDGSILTMKFSPDGQYLASAG 269 (701)
Q Consensus 214 ~~~~~~~~d~~v~vw~~~~~~~~--------------~~~~~~~----------~~l~~H~~~I~~l~fspdg~~Lasgs 269 (701)
-.+++++.|..||||.+.....+ ....... ..+.||++.|.++.|+|.+..|++++
T Consensus 207 ~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSAS 286 (764)
T KOG1063|consen 207 LLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSAS 286 (764)
T ss_pred EEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecc
Confidence 35677999999999997432200 0000011 13459999999999999999999999
Q ss_pred CCCcEEEEEeecCee--eeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcC---CccccccC
Q 005352 270 DDGVVRLWQVVEDER--LTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFP---PKVFRILE 344 (701)
Q Consensus 270 ~Dg~I~iWd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 344 (701)
.|.++.+|...+..- +....+.+... .........+.+....++...+ .+..-.+. ...|
T Consensus 287 aDksmiiW~pd~~tGiWv~~vRlGe~gg--------~a~GF~g~lw~~n~~~ii~~g~---~Gg~hlWkt~d~~~w---- 351 (764)
T KOG1063|consen 287 ADKSMIIWKPDENTGIWVDVVRLGEVGG--------SAGGFWGGLWSPNSNVIIAHGR---TGGFHLWKTKDKTFW---- 351 (764)
T ss_pred cCcceEEEecCCccceEEEEEEeecccc--------cccceeeEEEcCCCCEEEEecc---cCcEEEEeccCccce----
Confidence 999999998766522 22222211110 0001111122222211111111 11111111 1111
Q ss_pred CCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECC-CCeeeeeec----CCCCeEEEEEeeCCCCEEEEEEcCCc
Q 005352 345 KPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVG-NDHCLRVFP----HSNYVTCVHFNPVDDNYFISGSIDGK 418 (701)
Q Consensus 345 ~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~-~~~~~~~~~----h~~~V~~l~f~p~~~~~l~sgs~dg~ 418 (701)
.+...+.||.+.|++++|.|.| +|++.|.|.+-|++-.- ....-..+. |....+|++|-+ ....|++|.....
T Consensus 352 ~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn-~~~~FVSgAdEKV 430 (764)
T KOG1063|consen 352 TQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVN-EDLQFVSGADEKV 430 (764)
T ss_pred eeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehcc-CCceeeeccccee
Confidence 2344568999999999999999 99999999999998654 222222332 888999999987 5788999998899
Q ss_pred EEEEeCCC-------------------------------------------C----------------------------
Q 005352 419 VRIWAVLS-------------------------------------------C---------------------------- 427 (701)
Q Consensus 419 v~iwd~~~-------------------------------------------~---------------------------- 427 (701)
+|+|+... +
T Consensus 431 lRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq 510 (764)
T KOG1063|consen 431 LRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQ 510 (764)
T ss_pred eeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHH
Confidence 99996521 0
Q ss_pred ------cEEEEecCCCcEEEEEEeeCCCeEEEEecCC-----cEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEec
Q 005352 428 ------HVVDWVDIRQIVTAVCYRPDGQGGIVGSMMG-----DCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLP 496 (701)
Q Consensus 428 ------~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg-----~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p 496 (701)
++.++++|...|++++.+|+++.+++++... .|++|+..+..... ....|...|+.++|+|
T Consensus 511 ~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~--------~L~~HsLTVT~l~FSp 582 (764)
T KOG1063|consen 511 QNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQ--------ELEGHSLTVTRLAFSP 582 (764)
T ss_pred HhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhh--------eecccceEEEEEEECC
Confidence 0112445677799999999999999987644 38899987654322 2445668899999999
Q ss_pred CCCCEEEEEECCCcEEEEeCCccc-eeee---cccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 005352 497 QDSSKVMVSCADSQVRILQGPNVI-GKYK---GLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGH 561 (701)
Q Consensus 497 ~~~~~l~~~s~dg~I~iwd~~~~~-~~~~---~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~ 561 (701)
++.+|++.+.|.++.+|...+.. ..+. ...|..-|.+++|+|++.+++|+|.|.+|++|.....
T Consensus 583 -dg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 583 -DGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred -CCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence 89999999999999999875322 1111 3458889999999999999999999999999998776
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.5e-22 Score=179.21 Aligned_cols=263 Identities=17% Similarity=0.163 Sum_probs=198.4
Q ss_pred CCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeec-CCCCCCceeEEeeccCCCcceeeeccccceeeEEeeec
Q 005352 249 HDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVD-IPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRT 327 (701)
Q Consensus 249 H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (701)
....|.+++|+|.|.+.|.|+...+++|-.......+..-. ....++.
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~------------------------------- 79 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPS------------------------------- 79 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCe-------------------------------
Confidence 56679999999999999999999999998764432111100 0000000
Q ss_pred CCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeee-----ec-CCCCeEEE
Q 005352 328 SESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRV-----FP-HSNYVTCV 400 (701)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~-----~~-h~~~V~~l 400 (701)
.....-+.|++.|.|.+|+|.| ++++|+.|++|++.-.+...+..+ |. |.+.|..+
T Consensus 80 -----------------v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl 142 (350)
T KOG0641|consen 80 -----------------VLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDL 142 (350)
T ss_pred -----------------EEeeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeee
Confidence 0112335689999999999999 999999999999987765544322 33 89999999
Q ss_pred EEee---CCCCEEEEEE-cCCcEEEEeCCCCcEE-EEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeee
Q 005352 401 HFNP---VDDNYFISGS-IDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAE 475 (701)
Q Consensus 401 ~f~p---~~~~~l~sgs-~dg~v~iwd~~~~~~~-~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~ 475 (701)
+|.. ..+.+|++++ .|..|++-|...++.. ...+|.+.|.++ |+-+|-.+++|+.|.+|++||++-+.......
T Consensus 143 ~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~ 221 (350)
T KOG0641|consen 143 AFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLD 221 (350)
T ss_pred EEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeecc
Confidence 9974 1245666654 4677888888888766 456788888776 44578899999999999999998765543221
Q ss_pred EEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEE
Q 005352 476 ICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYM 555 (701)
Q Consensus 476 ~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~i 555 (701)
...+. .......|..++..| .+.+|++|-.|....+||++........+.|...|.++.|+|...|+++++.|..|++
T Consensus 222 ~~~~~-~glessavaav~vdp-sgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikl 299 (350)
T KOG0641|consen 222 NDFHD-GGLESSAVAAVAVDP-SGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKL 299 (350)
T ss_pred CcccC-CCcccceeEEEEECC-CcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEE
Confidence 11111 112336789999999 7999999999999999999987777777789999999999999999999999999999
Q ss_pred EeCCCCC
Q 005352 556 WNCIGHE 562 (701)
Q Consensus 556 Wd~~~~~ 562 (701)
-|+...-
T Consensus 300 tdlqgdl 306 (350)
T KOG0641|consen 300 TDLQGDL 306 (350)
T ss_pred eecccch
Confidence 9988754
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-21 Score=195.72 Aligned_cols=312 Identities=21% Similarity=0.303 Sum_probs=231.8
Q ss_pred ceeeecCc-cccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCee
Q 005352 206 GERVRLNE-EDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDER 284 (701)
Q Consensus 206 ~~~~~~~~-~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~ 284 (701)
+.++.+.+ +..++|..+|.|.||+.... +..+...+|.+.|.+++...+|.+| +|+.|..|..|| ..-+.
T Consensus 249 Vl~v~F~engdviTgDS~G~i~Iw~~~~~-------~~~k~~~aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd-~~y~k 319 (626)
T KOG2106|consen 249 VLCVTFLENGDVITGDSGGNILIWSKGTN-------RISKQVHAHDGGVFSLCMLRDGTLL-SGGKDRKIILWD-DNYRK 319 (626)
T ss_pred EEEEEEcCCCCEEeecCCceEEEEeCCCc-------eEEeEeeecCCceEEEEEecCccEe-ecCccceEEecc-ccccc
Confidence 45666655 46778999999999975321 1122344899999999999999654 599999999999 55556
Q ss_pred eeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEec
Q 005352 285 LTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK 364 (701)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~ 364 (701)
+++.++++..........+... +........++.. .+.........+|......++.+|
T Consensus 320 ~r~~elPe~~G~iRtv~e~~~d----i~vGTtrN~iL~G-----------------t~~~~f~~~v~gh~delwgla~hp 378 (626)
T KOG2106|consen 320 LRETELPEQFGPIRTVAEGKGD----ILVGTTRNFILQG-----------------TLENGFTLTVQGHGDELWGLATHP 378 (626)
T ss_pred cccccCchhcCCeeEEecCCCc----EEEeeccceEEEe-----------------eecCCceEEEEecccceeeEEcCC
Confidence 6666666544333333333222 1111010000000 111233456678999999999999
Q ss_pred CC-eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEE
Q 005352 365 NN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVC 443 (701)
Q Consensus 365 ~~-~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~ 443 (701)
+. +++|++.|+.+++|+ ..+.+.......++.|+.|+| .+ .++.|...|...+.|+.+...+.......+++++.
T Consensus 379 s~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhp-sg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ 454 (626)
T KOG2106|consen 379 SKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHP-SG-VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVR 454 (626)
T ss_pred ChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccC-cc-eEEEeeccceEEEEecccceeEEEEecCCceEEEE
Confidence 98 999999999999999 667777777789999999999 77 99999999999999999988887776799999999
Q ss_pred EeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCc-----
Q 005352 444 YRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN----- 518 (701)
Q Consensus 444 ~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~----- 518 (701)
|+|+|.+||+|+.|+.|++|-+..+...+...- +.+..+|+.+.|++ +++++.+-+.|-.|..|....
T Consensus 455 ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~------k~~gs~ithLDwS~-Ds~~~~~~S~d~eiLyW~~~~~~~~t 527 (626)
T KOG2106|consen 455 YSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVG------KCSGSPITHLDWSS-DSQFLVSNSGDYEILYWKPSECKQIT 527 (626)
T ss_pred EcCCCCEEEEecCCCeEEEEEECCCCcEEEEee------eecCceeEEeeecC-CCceEEeccCceEEEEEccccCcccc
Confidence 999999999999999999999988766543221 22227899999999 789999999999999985210
Q ss_pred ----------------------------------------------cceee------------ecccCCCCeEEEEEecC
Q 005352 519 ----------------------------------------------VIGKY------------KGLRRSGNQLSACFTSD 540 (701)
Q Consensus 519 ----------------------------------------------~~~~~------------~~~~~~~~v~~l~~s~d 540 (701)
....| +...|.+.|++++|..+
T Consensus 528 s~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~ 607 (626)
T KOG2106|consen 528 SVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCK 607 (626)
T ss_pred eecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeC
Confidence 00011 11237788999999998
Q ss_pred CCEEEEEeCCCcEEEEeC
Q 005352 541 GKHIVSAGEDSNVYMWNC 558 (701)
Q Consensus 541 g~~l~sgs~Dg~I~iWd~ 558 (701)
..+|++.+.|..|..|++
T Consensus 608 d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 608 DSHLISTGKDTSIMQWRL 625 (626)
T ss_pred CceEEecCCCceEEEEEe
Confidence 888888889999999986
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-22 Score=199.35 Aligned_cols=238 Identities=19% Similarity=0.264 Sum_probs=201.2
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCC
Q 005352 250 DGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSE 329 (701)
Q Consensus 250 ~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (701)
...|.++...|....++|||.|..+.++|...++
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q---------------------------------------------- 252 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQ---------------------------------------------- 252 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchhh----------------------------------------------
Confidence 4568888888887889999999999999987764
Q ss_pred ccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCC
Q 005352 330 SACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDD 407 (701)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~ 407 (701)
.+..|.||...|+.+.++|+. .+++++.|..|+||......+..... |..+|+.+..+| ++
T Consensus 253 ----------------~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~-tg 315 (506)
T KOG0289|consen 253 ----------------ILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHP-TG 315 (506)
T ss_pred ----------------hhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeecc-CC
Confidence 455678999999999999998 99999999999999987766555444 999999999999 99
Q ss_pred CEEEEEEcCCcEEEEeCCCCcEEEEecCC---CcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCC
Q 005352 408 NYFISGSIDGKVRIWAVLSCHVVDWVDIR---QIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKA 484 (701)
Q Consensus 408 ~~l~sgs~dg~v~iwd~~~~~~~~~~~~~---~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~ 484 (701)
.||++++.|++..+.|++++..+....+. -.+++.+|+|||..|.+|+.||.++|||+...... .....
T Consensus 316 eYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~--------a~Fpg 387 (506)
T KOG0289|consen 316 EYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNV--------AKFPG 387 (506)
T ss_pred cEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCcccc--------ccCCC
Confidence 99999999999999999999888665553 35999999999999999999999999999876522 23455
Q ss_pred CCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccce--eeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 005352 485 PCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIG--KYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIG 560 (701)
Q Consensus 485 ~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~--~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~ 560 (701)
|..+|..++|+. +|.+|++++.|+.|++||+++... .+... ....+.+++|.+.|.||+.++.|=.|++++-.+
T Consensus 388 ht~~vk~i~FsE-NGY~Lat~add~~V~lwDLRKl~n~kt~~l~-~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~ 463 (506)
T KOG0289|consen 388 HTGPVKAISFSE-NGYWLATAADDGSVKLWDLRKLKNFKTIQLD-EKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKT 463 (506)
T ss_pred CCCceeEEEecc-CceEEEEEecCCeEEEEEehhhcccceeecc-ccccceeEEEcCCCCeEEeecceeEEEEEeccc
Confidence 889999999999 899999999999999999986542 23322 233799999999999999998887777776433
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-22 Score=211.50 Aligned_cols=371 Identities=12% Similarity=0.111 Sum_probs=263.5
Q ss_pred cceeeecCccccccccccceEEEEEccCccchhhhccc--------------C-cee----ccCCCcEEEEEEccCCCEE
Q 005352 205 EGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYK--------------G-QEI----QAHDGSILTMKFSPDGQYL 265 (701)
Q Consensus 205 ~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~--------------~-~~l----~~H~~~I~~l~fspdg~~L 265 (701)
..+++..+...++.|..++.|++++-.... +..... . ... ++---...++.|++....|
T Consensus 262 nAnCIcVs~r~I~cgCa~g~vrlFnp~tL~--y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~kl 339 (1080)
T KOG1408|consen 262 NANCICVSSRLIACGCAKGMVRLFNPETLD--YAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKL 339 (1080)
T ss_pred ccceeeeecceEEEeeccceeeecCcchhh--hccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceE
Confidence 456778888889999999999999753211 111000 0 000 1111234578899999999
Q ss_pred EEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCC
Q 005352 266 ASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEK 345 (701)
Q Consensus 266 asgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (701)
...-.|..+.|||+..-.++...
T Consensus 340 scVYndhSlYvWDvrD~~kvgk~--------------------------------------------------------- 362 (1080)
T KOG1408|consen 340 SCVYNDHSLYVWDVRDVNKVGKC--------------------------------------------------------- 362 (1080)
T ss_pred EEEEcCceEEEEeccccccccce---------------------------------------------------------
Confidence 99999999999999876533211
Q ss_pred CeEEEcCCccCeEEEEE------------ecCCeEEEEECCCcEEEEECCCCeeeee-----------------------
Q 005352 346 PLHEFHGHSGEILDLSW------------SKNNYLLSASIDKTVRLWRVGNDHCLRV----------------------- 390 (701)
Q Consensus 346 ~~~~~~~h~~~I~~l~~------------s~~~~l~s~s~dg~I~iWd~~~~~~~~~----------------------- 390 (701)
+.+..|...|+++.- -|.+.|+|++.|++|++||+.....-.+
T Consensus 363 --~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~ 440 (1080)
T KOG1408|consen 363 --SSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIM 440 (1080)
T ss_pred --eeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhh
Confidence 111123333333322 2455799999999999999865211000
Q ss_pred ---------------ecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEE-EEecCCCcEEEEEEee---CCCeE
Q 005352 391 ---------------FPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRP---DGQGG 451 (701)
Q Consensus 391 ---------------~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~-~~~~~~~~i~~i~~sp---~g~~l 451 (701)
+.....+.+++++| ++++|++|..-|.++||++..-+.. ....|...|.++.|+- ..++|
T Consensus 441 ~d~~~~~fdka~~s~~d~r~G~R~~~vSp-~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLL 519 (1080)
T KOG1408|consen 441 HDASAGIFDKALVSTCDSRFGFRALAVSP-DGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLL 519 (1080)
T ss_pred hhccCCcccccchhhcCcccceEEEEECC-CcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhh
Confidence 01344689999999 9999999999999999999887655 5667899999999985 45789
Q ss_pred EEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCC-CEEEEEECCCcEEEEeCCc--cceeeeccc-
Q 005352 452 IVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDS-SKVMVSCADSQVRILQGPN--VIGKYKGLR- 527 (701)
Q Consensus 452 ~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~-~~l~~~s~dg~I~iwd~~~--~~~~~~~~~- 527 (701)
++++.|.-|++||+..+.. +......|...|+++.|.-.+. ..+++++.|..|.+--..+ ....|..+.
T Consensus 520 ASasrdRlIHV~Dv~rny~-------l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~ 592 (1080)
T KOG1408|consen 520 ASASRDRLIHVYDVKRNYD-------LVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQ 592 (1080)
T ss_pred hhccCCceEEEEecccccc-------hhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceecccccc
Confidence 9999999999999976543 2333556778999999987443 5677888888876543221 122222221
Q ss_pred --CCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccC
Q 005352 528 --RSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVS 605 (701)
Q Consensus 528 --~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 605 (701)
....++.++..|..+++++++.|..|+||++.+++.... .+ ....
T Consensus 593 t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~-----FK----------------------------gs~~ 639 (1080)
T KOG1408|consen 593 TLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKS-----FK----------------------------GSRD 639 (1080)
T ss_pred ccccceEEEeeeCCCcceEEEEecccceEEEeccccceeee-----ec----------------------------cccc
Confidence 346789999999999999999999999999999984221 11 1111
Q ss_pred CCCCCCccccCCCccccCccccccCCCCcccCCCCccCCCCccccccccchhhhhhhhhcccccccccCCCccEEEEecC
Q 005352 606 DDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGW 685 (701)
Q Consensus 606 ~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivTgg~ 685 (701)
+....-.+...|. +-++++...|+++.+++.-..+++.++.+| ...|..+-|.+| =+.|++++-
T Consensus 640 ~eG~lIKv~lDPS----giY~atScsdktl~~~Df~sgEcvA~m~GH-----------sE~VTG~kF~nD-CkHlISvsg 703 (1080)
T KOG1408|consen 640 HEGDLIKVILDPS----GIYLATSCSDKTLCFVDFVSGECVAQMTGH-----------SEAVTGVKFLND-CKHLISVSG 703 (1080)
T ss_pred CCCceEEEEECCC----ccEEEEeecCCceEEEEeccchhhhhhcCc-----------chheeeeeeccc-chhheeecC
Confidence 1223334455775 677788889999999999999999999888 346778888888 778889999
Q ss_pred CCeEeEEe
Q 005352 686 DGRIRSFL 693 (701)
Q Consensus 686 DG~Irvw~ 693 (701)
||.|.||+
T Consensus 704 DgCIFvW~ 711 (1080)
T KOG1408|consen 704 DGCIFVWK 711 (1080)
T ss_pred CceEEEEE
Confidence 99999998
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-22 Score=211.36 Aligned_cols=273 Identities=19% Similarity=0.321 Sum_probs=216.7
Q ss_pred cccCcceeeecCc-cccccccccceEEEEEccCccchhhhcccCceeccCCCcEEE-EEEcc-CCCEEEEEeCCCcEEEE
Q 005352 201 DKQGEGERVRLNE-EDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILT-MKFSP-DGQYLASAGDDGVVRLW 277 (701)
Q Consensus 201 ~~~~~~~~~~~~~-~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~-l~fsp-dg~~Lasgs~Dg~I~iW 277 (701)
.|+..+..+...+ ..++.+++|++++||.-... + ......+++|.+-|.+ ++|-+ ++-.|++|+.|.+|.+|
T Consensus 12 gH~~DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~--~---~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~ 86 (745)
T KOG0301|consen 12 GHKSDVRAVAVTDGVCIISGSRDGTVKVWAKKGK--Q---YLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVF 86 (745)
T ss_pred cCccchheeEecCCeEEeecCCCCceeeeeccCc--c---cccceecccCcceeeccceeccccCcceEeecccceEEEE
Confidence 4555565544444 45777999999999974322 1 1222457779998888 88876 55579999999999999
Q ss_pred EeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCe
Q 005352 278 QVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEI 357 (701)
Q Consensus 278 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I 357 (701)
...+. .|+..++||...|
T Consensus 87 ~~~~~--------------------------------------------------------------~P~~~LkgH~snV 104 (745)
T KOG0301|consen 87 KLSQA--------------------------------------------------------------EPLYTLKGHKSNV 104 (745)
T ss_pred ecCCC--------------------------------------------------------------Cchhhhhccccce
Confidence 98665 5677889999999
Q ss_pred EEEEEecCCeEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEE-EEecC
Q 005352 358 LDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDI 435 (701)
Q Consensus 358 ~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~-~~~~~ 435 (701)
.+++...++.+++||.|.++++|-.. ++...+. |+..|.++++-| .+ .++||+.|.+|++|.- ++.+ .+.+|
T Consensus 105 C~ls~~~~~~~iSgSWD~TakvW~~~--~l~~~l~gH~asVWAv~~l~-e~-~~vTgsaDKtIklWk~--~~~l~tf~gH 178 (745)
T KOG0301|consen 105 CSLSIGEDGTLISGSWDSTAKVWRIG--ELVYSLQGHTASVWAVASLP-EN-TYVTGSADKTIKLWKG--GTLLKTFSGH 178 (745)
T ss_pred eeeecCCcCceEecccccceEEecch--hhhcccCCcchheeeeeecC-CC-cEEeccCcceeeeccC--Cchhhhhccc
Confidence 99998878899999999999999754 4444454 999999999998 44 8999999999999976 4444 56679
Q ss_pred CCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEe
Q 005352 436 RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQ 515 (701)
Q Consensus 436 ~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd 515 (701)
.+.|..+++-+++ .|++++.||.|++|++....+ . ....|...+.++...+ ++..+++++.|++++||+
T Consensus 179 tD~VRgL~vl~~~-~flScsNDg~Ir~w~~~ge~l-~--------~~~ghtn~vYsis~~~-~~~~Ivs~gEDrtlriW~ 247 (745)
T KOG0301|consen 179 TDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDGEVL-L--------EMHGHTNFVYSISMAL-SDGLIVSTGEDRTLRIWK 247 (745)
T ss_pred hhheeeeEEecCC-CeEeecCCceEEEEeccCcee-e--------eeeccceEEEEEEecC-CCCeEEEecCCceEEEee
Confidence 9999999999875 678999999999999954432 2 1445667888888666 688999999999999999
Q ss_pred CCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 005352 516 GPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIG 560 (701)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~ 560 (701)
.....+.... ....|.++.+-++|. |++|+.||.||||....
T Consensus 248 ~~e~~q~I~l--PttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 248 KDECVQVITL--PTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDK 289 (745)
T ss_pred cCceEEEEec--CccceEEEEEeeCCC-EEEeccCceEEEEEecc
Confidence 9866666665 556899999988887 78888999999998763
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.8e-23 Score=194.21 Aligned_cols=307 Identities=16% Similarity=0.262 Sum_probs=221.9
Q ss_pred cccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCC
Q 005352 216 AMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDP 295 (701)
Q Consensus 216 ~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~ 295 (701)
+.+++.|.+.+||.+... .+...+.||.+.|++|+|++.+.+++|++.|++.+||...-+-.+..-..+....
T Consensus 163 ~gtASADhTA~iWs~Esg-------~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hS 235 (481)
T KOG0300|consen 163 CGTASADHTARIWSLESG-------ACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHS 235 (481)
T ss_pred eeecccccceeEEeeccc-------cceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCC
Confidence 345788999999976533 2334688999999999999999999999999999999843211100000000000
Q ss_pred ceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECC
Q 005352 296 SCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASID 374 (701)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~d 374 (701)
.- .+.. ..+.. ..........++.. .-.|+..|.+|.+.|.+..|-..+ ++++++.|
T Consensus 236 sE--------eE~e--~sDe~--~~d~d~~~~sD~~t----------iRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWD 293 (481)
T KOG0300|consen 236 SE--------EEEE--HSDEH--NRDTDSSEKSDGHT----------IRVPLMRLTGHRAVVSACDWLAGGQQMVTASWD 293 (481)
T ss_pred ch--------hhhh--ccccc--ccccccccccCCce----------eeeeeeeeeccccceEehhhhcCcceeeeeecc
Confidence 00 0000 00000 00000000011111 115788999999999999999888 99999999
Q ss_pred CcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCC--cEEEEecCCCcEEEEEEeeCCCeE
Q 005352 375 KTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSC--HVVDWVDIRQIVTAVCYRPDGQGG 451 (701)
Q Consensus 375 g~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~--~~~~~~~~~~~i~~i~~sp~g~~l 451 (701)
.+..+||+++++.+..+. |....+.++-+| +.+++++.+.|-+.++||.+.. .+-.+.+|...|+++.|..+. .+
T Consensus 294 RTAnlwDVEtge~v~~LtGHd~ELtHcstHp-tQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~v 371 (481)
T KOG0300|consen 294 RTANLWDVETGEVVNILTGHDSELTHCSTHP-TQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RV 371 (481)
T ss_pred ccceeeeeccCceeccccCcchhccccccCC-cceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ce
Confidence 999999999999999887 999999999999 8999999999999999999843 233567899999999998764 68
Q ss_pred EEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccc-eee---eccc
Q 005352 452 IVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVI-GKY---KGLR 527 (701)
Q Consensus 452 ~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~-~~~---~~~~ 527 (701)
++|+.|.+|++||+++....+. ......+++.++.+. +..+|+.--.+.+|++||+.... ..+ ....
T Consensus 372 VSgSDDrTvKvWdLrNMRsplA--------TIRtdS~~NRvavs~-g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqg 442 (481)
T KOG0300|consen 372 VSGSDDRTVKVWDLRNMRSPLA--------TIRTDSPANRVAVSK-GHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQG 442 (481)
T ss_pred eecCCCceEEEeeeccccCcce--------eeecCCccceeEeec-CCceEEeccCCceEEEEecCCCccccCCcccccc
Confidence 8999999999999987653321 112235678888887 66788888889999999987321 111 2234
Q ss_pred CCCCeEEEEEecCC--CEEEEEeCCCcEEEEeCCCCC
Q 005352 528 RSGNQLSACFTSDG--KHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 528 ~~~~v~~l~~s~dg--~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
|...|+|++|..+. .-|++++.|..+.=|+++.+.
T Consensus 443 HrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p~ 479 (481)
T KOG0300|consen 443 HRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTPT 479 (481)
T ss_pred cceeeeeeeccccCcccccccccccceeeeeEecccC
Confidence 88899999997543 458899999999999998764
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-21 Score=208.08 Aligned_cols=406 Identities=13% Similarity=0.112 Sum_probs=287.8
Q ss_pred ccCcceeeecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccC--CCEEEEEeCCCcEEEEEe
Q 005352 202 KQGEGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPD--GQYLASAGDDGVVRLWQV 279 (701)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd--g~~Lasgs~Dg~I~iWd~ 279 (701)
|..++.-+.+-+++++.+..++.+.||+......+. .+. ..-++.-.+.|+++ ++|. =+.++.|+.+|.++||++
T Consensus 113 ~~a~v~~l~~fGe~lia~d~~~~l~vw~~s~~~~e~-~l~-~~~~~~~~~~Ital-~HP~TYLNKIvvGs~~G~lql~Nv 189 (910)
T KOG1539|consen 113 HGAKVHLLLPFGEHLIAVDISNILFVWKTSSIQEEL-YLQ-STFLKVEGDFITAL-LHPSTYLNKIVVGSSQGRLQLWNV 189 (910)
T ss_pred ccceEEEEeeecceEEEEEccCcEEEEEeccccccc-ccc-ceeeeccCCceeeE-ecchhheeeEEEeecCCcEEEEEe
Confidence 344677778889999999999999999976532221 111 11112222237776 4664 345889999999999999
Q ss_pred ecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEE
Q 005352 280 VEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILD 359 (701)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~ 359 (701)
.+++ .+++++++...|++
T Consensus 190 rt~K--------------------------------------------------------------~v~~f~~~~s~IT~ 207 (910)
T KOG1539|consen 190 RTGK--------------------------------------------------------------VVYTFQEFFSRITA 207 (910)
T ss_pred ccCc--------------------------------------------------------------EEEEecccccceeE
Confidence 9874 56677888899999
Q ss_pred EEEecCC-eEEEEECCCcEEEEECCCCeeeeeecCC-CCeEEEEEeeCCCC-EEEEEEcCCcEEEEeCCCCcEEEEe--c
Q 005352 360 LSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHS-NYVTCVHFNPVDDN-YFISGSIDGKVRIWAVLSCHVVDWV--D 434 (701)
Q Consensus 360 l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~h~-~~V~~l~f~p~~~~-~l~sgs~dg~v~iwd~~~~~~~~~~--~ 434 (701)
+.-+|-= .++.|..+|+|.+++++.++.+..|+|. +.|+.+.|.. ||+ .+++|+..|.+.+||+...+.+... .
T Consensus 208 ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrt-DG~p~las~~~~G~m~~wDLe~kkl~~v~~na 286 (910)
T KOG1539|consen 208 IEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRT-DGNPLLASGRSNGDMAFWDLEKKKLINVTRNA 286 (910)
T ss_pred eccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEecc-CCCeeEEeccCCceEEEEEcCCCeeeeeeecc
Confidence 9888865 8999999999999999999999999986 9999999998 555 5677777899999999998877433 4
Q ss_pred CCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEE
Q 005352 435 IRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRIL 514 (701)
Q Consensus 435 ~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iw 514 (701)
|.+.|+...|.|....+++++.|+.+++|-.+++.-. ........+|..+..++.|.-..+..+++++.|++.+.+
T Consensus 287 h~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~----pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~f 362 (910)
T KOG1539|consen 287 HYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGV----PRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSF 362 (910)
T ss_pred ccCCcccceecCCCceEeeccCCCceeEEEeeCCCCc----chheeeccCCCCCchheeeeccCcEEEEecccCcchhhh
Confidence 6789999999999999999999999988866644321 112223455666777777765566777777777766655
Q ss_pred e-----------------------------------------------------------------CCccce-eeecc--
Q 005352 515 Q-----------------------------------------------------------------GPNVIG-KYKGL-- 526 (701)
Q Consensus 515 d-----------------------------------------------------------------~~~~~~-~~~~~-- 526 (701)
+ .++... .+...
T Consensus 363 s~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~ 442 (910)
T KOG1539|consen 363 SVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPK 442 (910)
T ss_pred hhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCc
Confidence 4 221100 01000
Q ss_pred ---cCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCCCCcc-----ccccccccccccC-CceEEecCCCC-CCCCC
Q 005352 527 ---RRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHD-----QAKTIRSLERFTT-NASIAIPWCGL-KCGNA 596 (701)
Q Consensus 527 ---~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~~~~-----~~~~~~~~~~~~~-~~~~a~~~~~~-~~~~~ 596 (701)
.....+++++.++.|++.+.|...|.|-+||++++-..... ....+..+..-.. ...++..-.|. .+|+.
T Consensus 443 ~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f 522 (910)
T KOG1539|consen 443 RFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDF 522 (910)
T ss_pred cccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEec
Confidence 12367899999999999999999999999999988642211 1222333322222 22233333343 56776
Q ss_pred CCCCccccCC-CCCCCccccCCCccccCccccccCCCCcccCCCCccCCCCccccccccchhhhhhhhhcccccccccCC
Q 005352 597 EKEPQLHVSD-DDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLSSASALHKSQYKFLKSSCLCTTSSHA 675 (701)
Q Consensus 597 ~~~~~~~~~~-~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (701)
.+........ .+++..+.++-. ...++....|-.|.+.|......+..+.+| .+.+..++||++
T Consensus 523 ~~k~l~~~l~l~~~~~~iv~hr~----s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh-----------~nritd~~FS~D 587 (910)
T KOG1539|consen 523 KKKVLKKSLRLGSSITGIVYHRV----SDLLAIALDDFSIRVVDVVTRKVVREFWGH-----------GNRITDMTFSPD 587 (910)
T ss_pred CCcceeeeeccCCCcceeeeeeh----hhhhhhhcCceeEEEEEchhhhhhHHhhcc-----------ccceeeeEeCCC
Confidence 6655444332 333444443332 445666777888889998888878888777 578999999999
Q ss_pred CccEEEEecCCCeEeEEe
Q 005352 676 WGLVIVTAGWDGRIRSFL 693 (701)
Q Consensus 676 ~g~~ivTgg~DG~Irvw~ 693 (701)
|+.|++|+-|++||+|+
T Consensus 588 -grWlisasmD~tIr~wD 604 (910)
T KOG1539|consen 588 -GRWLISASMDSTIRTWD 604 (910)
T ss_pred -CcEEEEeecCCcEEEEe
Confidence 99999999999999997
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.9e-22 Score=203.95 Aligned_cols=302 Identities=18% Similarity=0.331 Sum_probs=225.3
Q ss_pred CceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeE
Q 005352 243 GQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (701)
Q Consensus 243 ~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (701)
...++||++.|.+|...|.|.+||+|+.||+|+||.+.++.++..+.+.. .+.|+.|.+.....+.++..... ..++.
T Consensus 393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~-~I~~vaw~P~~~~~vLAvA~~~~-~~ivn 470 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDS-EIRSVAWNPLSDLCVLAVAVGEC-VLIVN 470 (733)
T ss_pred eeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecc-eeEEEEecCCCCceeEEEEecCc-eEEeC
Confidence 34678999999999999999999999999999999999999999887765 46666776666655555544433 11111
Q ss_pred Eeee-------------------cCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECC---CcEEE
Q 005352 323 SLRR-------------------TSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASID---KTVRL 379 (701)
Q Consensus 323 ~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~d---g~I~i 379 (701)
..-+ ..+.+.+.|.....+-.++-++..-.|...|..+.|+..| ||++..-+ ..|.|
T Consensus 471 p~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vli 550 (733)
T KOG0650|consen 471 PIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLI 550 (733)
T ss_pred ccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEE
Confidence 1100 0111222222222222334456667799999999999999 98887654 56999
Q ss_pred EECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEE-EEecCCCcEEEEEEeeCCCeEEEEecC
Q 005352 380 WRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMM 457 (701)
Q Consensus 380 Wd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~-~~~~~~~~i~~i~~sp~g~~l~~gs~d 457 (701)
.++........|. ..+.|.++.|+| ...+|++++ ...|+|||+..+.++ ........|..++++|.|..|++|+.|
T Consensus 551 HQLSK~~sQ~PF~kskG~vq~v~FHP-s~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d 628 (733)
T KOG0650|consen 551 HQLSKRKSQSPFRKSKGLVQRVKFHP-SKPYLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYD 628 (733)
T ss_pred EecccccccCchhhcCCceeEEEecC-CCceEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCC
Confidence 9998887777774 678899999999 677777776 568999999887766 445556789999999999999999999
Q ss_pred CcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCc-----------cceeeecc
Q 005352 458 GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN-----------VIGKYKGL 526 (701)
Q Consensus 458 g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~-----------~~~~~~~~ 526 (701)
+.+..||+.-.... ......|...++.++|++ .-.++++|+.||.+.|+...- ....+.++
T Consensus 629 ~k~~WfDldlsskP-------yk~lr~H~~avr~Va~H~-ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH 700 (733)
T KOG0650|consen 629 KKMCWFDLDLSSKP-------YKTLRLHEKAVRSVAFHK-RYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGH 700 (733)
T ss_pred CeeEEEEcccCcch-------hHHhhhhhhhhhhhhhcc-ccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCc
Confidence 99999999765322 223455678899999999 678999999999999986431 11222232
Q ss_pred c--CCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 005352 527 R--RSGNQLSACFTSDGKHIVSAGEDSNVYMW 556 (701)
Q Consensus 527 ~--~~~~v~~l~~s~dg~~l~sgs~Dg~I~iW 556 (701)
. ....|..+.|+|...+|++++.||+|++|
T Consensus 701 ~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 701 EKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred eeecccceEeecccCCCceEEecCCCceEEee
Confidence 1 23458999999999999999999999998
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-21 Score=209.88 Aligned_cols=252 Identities=19% Similarity=0.283 Sum_probs=201.5
Q ss_pred ccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeee
Q 005352 247 QAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRR 326 (701)
Q Consensus 247 ~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (701)
.+|+..-+.|+|.|+|.+|.+++.||.|++|+......
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e------------------------------------------ 47 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEE------------------------------------------ 47 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCccc------------------------------------------
Confidence 36999999999999999999999999999999765420
Q ss_pred cCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCCeEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeC
Q 005352 327 TSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPV 405 (701)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~ 405 (701)
.| ..+..+...|.+++.. .++|++|+.+++|.+|.+.+++.-..+. ..-++++++|+-
T Consensus 48 ------------------~P-~ti~~~g~~v~~ia~~-s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g- 106 (933)
T KOG1274|consen 48 ------------------EP-ETIDISGELVSSIACY-SNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSG- 106 (933)
T ss_pred ------------------CC-chhhccCceeEEEeec-ccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEec-
Confidence 00 0111256677777653 2399999999999999998887654443 577899999998
Q ss_pred CCCEEEEEEcCCcEEEEeCCCCc-EEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCC
Q 005352 406 DDNYFISGSIDGKVRIWAVLSCH-VVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKA 484 (701)
Q Consensus 406 ~~~~l~sgs~dg~v~iwd~~~~~-~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~ 484 (701)
++++++.|+.|-.|++-++.+.. .....+|..+|.++.|+|++++|++.+.||.|++|++.++.+..............
T Consensus 107 ~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~ 186 (933)
T KOG1274|consen 107 SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFI 186 (933)
T ss_pred CCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCcccccc
Confidence 99999999999999999998765 44777899999999999999999999999999999999876543322111111112
Q ss_pred CCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeeccc--CCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 485 PCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLR--RSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 485 ~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~--~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
....++.++|+| ++..+++.+.|+.|++|+.......+.... +...+..+.|+|+|+|||+++.||.|.|||+++.+
T Consensus 187 ~s~i~~~~aW~P-k~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~ 265 (933)
T KOG1274|consen 187 LSRICTRLAWHP-KGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHE 265 (933)
T ss_pred ccceeeeeeecC-CCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccch
Confidence 245567899999 677888888999999999988777665533 44559999999999999999999999999999743
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.9e-22 Score=188.48 Aligned_cols=231 Identities=21% Similarity=0.342 Sum_probs=176.8
Q ss_pred ccCCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEee
Q 005352 247 QAHDGSILTMKFSP-DGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLR 325 (701)
Q Consensus 247 ~~H~~~I~~l~fsp-dg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (701)
+.|.+.|+++...+ .|+|+++|+.||.|.+||+++......-..- .
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li-----------------------------~---- 86 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLI-----------------------------A---- 86 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccce-----------------------------e----
Confidence 34999999999988 5999999999999999999875311100000 0
Q ss_pred ecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC--eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEe
Q 005352 326 RTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFN 403 (701)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~--~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~ 403 (701)
+..++ -....-.+|+-.|..+.|-|-. .|.+++.|.++++||..+.+....|+.++.|..-+++
T Consensus 87 ---k~~c~-----------v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamS 152 (397)
T KOG4283|consen 87 ---KHKCI-----------VAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMS 152 (397)
T ss_pred ---heeee-----------ccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEeecCceeehhhcC
Confidence 00000 0011225789999999999954 9999999999999999999999999999999999999
Q ss_pred eCC--CCEEEEEEcCCcEEEEeCCCCcEE-EEecCCCcEEEEEEeeCCCe-EEEEecCCcEEEEECCCCeeeeeeeEEee
Q 005352 404 PVD--DNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQG-GIVGSMMGDCRFYNVSDNHLELDAEICVH 479 (701)
Q Consensus 404 p~~--~~~l~sgs~dg~v~iwd~~~~~~~-~~~~~~~~i~~i~~sp~g~~-l~~gs~dg~v~i~d~~~~~~~~~~~~~~~ 479 (701)
|.. ..++++|..+-.|++.|+.++... .+.+|.+.|.++.|+|...+ |++|+.||.|++||++...-
T Consensus 153 p~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasg--------- 223 (397)
T KOG4283|consen 153 PMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASG--------- 223 (397)
T ss_pred hhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccc---------
Confidence 843 346778888889999999999877 56689999999999998775 67789999999999975311
Q ss_pred cccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCc--cceee-ecccCCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 005352 480 SKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN--VIGKY-KGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMW 556 (701)
Q Consensus 480 ~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~--~~~~~-~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iW 556 (701)
..++.|..+ ..+.. ....|.+.+..++|+.++.++++.+.|..+++|
T Consensus 224 ------------------------------cf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~w 273 (397)
T KOG4283|consen 224 ------------------------------CFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVW 273 (397)
T ss_pred ------------------------------eeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEe
Confidence 111111111 01111 123488999999999999999999999999999
Q ss_pred eCCCCCC
Q 005352 557 NCIGHEE 563 (701)
Q Consensus 557 d~~~~~~ 563 (701)
+..++..
T Consensus 274 n~~~G~n 280 (397)
T KOG4283|consen 274 NMESGRN 280 (397)
T ss_pred ecccCcc
Confidence 9998874
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.8e-22 Score=187.61 Aligned_cols=239 Identities=19% Similarity=0.283 Sum_probs=195.7
Q ss_pred cccCcceeeecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCC--EEEEEeCCCcEEEEE
Q 005352 201 DKQGEGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQ--YLASAGDDGVVRLWQ 278 (701)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~--~Lasgs~Dg~I~iWd 278 (701)
-|.+.+.++..++.++++|+.|.+|+|||..++.. ...+..|.+.|+++.|.++-. .|++|+.||.|.+|+
T Consensus 41 aH~~sitavAVs~~~~aSGssDetI~IYDm~k~~q-------lg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~ 113 (362)
T KOG0294|consen 41 AHAGSITALAVSGPYVASGSSDETIHIYDMRKRKQ-------LGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWR 113 (362)
T ss_pred ccccceeEEEecceeEeccCCCCcEEEEeccchhh-------hcceeccccceEEEEecCCcchhheeeecCCCcEEEEE
Confidence 36677889999999999999999999999865432 134566999999999998765 899999999999999
Q ss_pred eecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeE
Q 005352 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEIL 358 (701)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~ 358 (701)
+..- ..+..+++|.+.|+
T Consensus 114 ~~~W--------------------------------------------------------------~~~~slK~H~~~Vt 131 (362)
T KOG0294|consen 114 VGSW--------------------------------------------------------------ELLKSLKAHKGQVT 131 (362)
T ss_pred cCCe--------------------------------------------------------------EEeeeecccccccc
Confidence 8654 34567789999999
Q ss_pred EEEEecCC-eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCC
Q 005352 359 DLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQ 437 (701)
Q Consensus 359 ~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~ 437 (701)
.|+.+|.+ +-++.+.|+.+++||+-+++.-...+-....+.+.|+| .+.+|+.+..+ .|-||.+.+..+......+.
T Consensus 132 ~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~-~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~~ 209 (362)
T KOG0294|consen 132 DLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSP-QGDHFVVSGRN-KIDIYQLDNASVFREIENPK 209 (362)
T ss_pred eeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcC-CCCEEEEEecc-EEEEEecccHhHhhhhhccc
Confidence 99999999 77899999999999999998777777666666799999 88888888865 59999999887776666566
Q ss_pred cEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEe-cCCCCEEEEEECCCcEEEEeC
Q 005352 438 IVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFL-PQDSSKVMVSCADSQVRILQG 516 (701)
Q Consensus 438 ~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~-p~~~~~l~~~s~dg~I~iwd~ 516 (701)
.+.++.|. ++..|++|..++.|.+||....... .....|..+|.++.+. ...+.+|++++.||.|+|||+
T Consensus 210 r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~--------~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~ 280 (362)
T KOG0294|consen 210 RILCATFL-DGSELLVGGDNEWISLKDTDSDTPL--------TEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDI 280 (362)
T ss_pred cceeeeec-CCceEEEecCCceEEEeccCCCccc--------eeeecchhheeeeEEEecCCceEEEEeccCceEEEEEc
Confidence 67777765 5678999999999999999874332 2245677889998843 336789999999999999998
Q ss_pred Ccc
Q 005352 517 PNV 519 (701)
Q Consensus 517 ~~~ 519 (701)
...
T Consensus 281 ~~~ 283 (362)
T KOG0294|consen 281 DME 283 (362)
T ss_pred ccc
Confidence 743
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.7e-22 Score=184.22 Aligned_cols=239 Identities=19% Similarity=0.264 Sum_probs=189.4
Q ss_pred eecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEcc--CCCEEEEEeCCCcEEEEEeecCeeee
Q 005352 209 VRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSP--DGQYLASAGDDGVVRLWQVVEDERLT 286 (701)
Q Consensus 209 ~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp--dg~~Lasgs~Dg~I~iWd~~~~~~~~ 286 (701)
+.+.+..+++++.|++|||+....... .....+|.||.++|+.++|.. .|.+||+++.||.|.||.-+++.-
T Consensus 19 lDyygkrlATcsSD~tVkIf~v~~n~~----s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w-- 92 (299)
T KOG1332|consen 19 LDYYGKRLATCSSDGTVKIFEVRNNGQ----SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRW-- 92 (299)
T ss_pred hhhhcceeeeecCCccEEEEEEcCCCC----ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCch--
Confidence 457788999999999999999876543 233457999999999999965 699999999999999999777631
Q ss_pred eecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC
Q 005352 287 EVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN 366 (701)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~ 366 (701)
...+.+..|...|++++|.|.+
T Consensus 93 ----------------------------------------------------------~k~~e~~~h~~SVNsV~waphe 114 (299)
T KOG1332|consen 93 ----------------------------------------------------------TKAYEHAAHSASVNSVAWAPHE 114 (299)
T ss_pred ----------------------------------------------------------hhhhhhhhhcccceeecccccc
Confidence 2234557799999999999986
Q ss_pred ---eEEEEECCCcEEEEECCCC-e-ee--eeecCCCCeEEEEEeeCC--C-----------CEEEEEEcCCcEEEEeCCC
Q 005352 367 ---YLLSASIDKTVRLWRVGND-H-CL--RVFPHSNYVTCVHFNPVD--D-----------NYFISGSIDGKVRIWAVLS 426 (701)
Q Consensus 367 ---~l~s~s~dg~I~iWd~~~~-~-~~--~~~~h~~~V~~l~f~p~~--~-----------~~l~sgs~dg~v~iwd~~~ 426 (701)
.|++++.||.|.|.+.++. . .. ..+.|.-.|+++.|.|.. + +.|++|+.|..|+||+..+
T Consensus 115 ygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~ 194 (299)
T KOG1332|consen 115 YGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDS 194 (299)
T ss_pred cceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCC
Confidence 8899999999999988765 1 11 123399999999999831 2 5699999999999999988
Q ss_pred CcEE---EEecCCCcEEEEEEeeCC----CeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCC
Q 005352 427 CHVV---DWVDIRQIVTAVCYRPDG----QGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDS 499 (701)
Q Consensus 427 ~~~~---~~~~~~~~i~~i~~sp~g----~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~ 499 (701)
++-+ .+.+|.+.|..++|.|.- .+|++++.||+|.||..+.........+ .......+..+.|+. .+
T Consensus 195 ~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tl-----l~~f~~~~w~vSWS~-sG 268 (299)
T KOG1332|consen 195 DSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTL-----LEEFPDVVWRVSWSL-SG 268 (299)
T ss_pred cchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccc-----cccCCcceEEEEEec-cc
Confidence 6432 366799999999999954 5799999999999999874322211111 122446688999999 79
Q ss_pred CEEEEEECCCcEEEEeCC
Q 005352 500 SKVMVSCADSQVRILQGP 517 (701)
Q Consensus 500 ~~l~~~s~dg~I~iwd~~ 517 (701)
+.|++++.|+.|.+|.-.
T Consensus 269 n~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 269 NILAVSGGDNKVTLWKEN 286 (299)
T ss_pred cEEEEecCCcEEEEEEeC
Confidence 999999999999999643
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-20 Score=195.03 Aligned_cols=272 Identities=14% Similarity=0.140 Sum_probs=194.4
Q ss_pred cccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEE-EEEeCCCcEEEEEeecCeeeeeecCCCCC
Q 005352 216 AMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYL-ASAGDDGVVRLWQVVEDERLTEVDIPEID 294 (701)
Q Consensus 216 ~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~L-asgs~Dg~I~iWd~~~~~~~~~~~~~~~~ 294 (701)
+++++.|+.+++|+..... ..+.+..|.. +.+++|+|+|++| ++++.++.|++||+.+++.+..
T Consensus 4 ~~s~~~d~~v~~~d~~t~~-------~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~------- 68 (300)
T TIGR03866 4 YVSNEKDNTISVIDTATLE-------VTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGT------- 68 (300)
T ss_pred EEEecCCCEEEEEECCCCc-------eEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEe-------
Confidence 4567889999999975432 1123444443 6789999999976 5677899999999887653221
Q ss_pred CceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEE-EEE
Q 005352 295 PSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLL-SAS 372 (701)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~-s~s 372 (701)
+..+. .+..++|+|++ .++ +++
T Consensus 69 -------------------------------------------------------~~~~~-~~~~~~~~~~g~~l~~~~~ 92 (300)
T TIGR03866 69 -------------------------------------------------------LPSGP-DPELFALHPNGKILYIANE 92 (300)
T ss_pred -------------------------------------------------------ccCCC-CccEEEECCCCCEEEEEcC
Confidence 11222 24567899998 554 456
Q ss_pred CCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCC-cEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeE
Q 005352 373 IDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDG-KVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGG 451 (701)
Q Consensus 373 ~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg-~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l 451 (701)
.++.|++||+.+.+.+..+.+...+.+++|+| ++.+++++..++ .+.+||..+++..........+..++|+|+++.+
T Consensus 93 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l 171 (300)
T TIGR03866 93 DDNLVTVIDIETRKVLAEIPVGVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKEL 171 (300)
T ss_pred CCCeEEEEECCCCeEEeEeeCCCCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEE
Confidence 68999999999998888887666678999999 999999888765 4677899888776554455567889999999988
Q ss_pred EEEe-cCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEE-EEEECCCcEEEEeCCccceeeecccCC
Q 005352 452 IVGS-MMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKV-MVSCADSQVRILQGPNVIGKYKGLRRS 529 (701)
Q Consensus 452 ~~gs-~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l-~~~s~dg~I~iwd~~~~~~~~~~~~~~ 529 (701)
++++ .++.|++||+.+.+............ .........+.|+| ++.++ ++.+.++.|.+||..+....... .+.
T Consensus 172 ~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~s~-dg~~~~~~~~~~~~i~v~d~~~~~~~~~~-~~~ 248 (300)
T TIGR03866 172 WVSSEIGGTVSVIDVATRKVIKKITFEIPGV-HPEAVQPVGIKLTK-DGKTAFVALGPANRVAVVDAKTYEVLDYL-LVG 248 (300)
T ss_pred EEEcCCCCEEEEEEcCcceeeeeeeeccccc-ccccCCccceEECC-CCCEEEEEcCCCCeEEEEECCCCcEEEEE-EeC
Confidence 6654 58999999999876543222111110 01112345688999 55654 44456778999999765443222 244
Q ss_pred CCeEEEEEecCCCEEEEE-eCCCcEEEEeCCCCC
Q 005352 530 GNQLSACFTSDGKHIVSA-GEDSNVYMWNCIGHE 562 (701)
Q Consensus 530 ~~v~~l~~s~dg~~l~sg-s~Dg~I~iWd~~~~~ 562 (701)
..+.+++|+|+|++|+++ +.+|.|++||+.+++
T Consensus 249 ~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~ 282 (300)
T TIGR03866 249 QRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALK 282 (300)
T ss_pred CCcceEEECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence 578999999999999886 468999999999876
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.6e-22 Score=205.85 Aligned_cols=254 Identities=21% Similarity=0.350 Sum_probs=186.4
Q ss_pred EEEEEccC---CCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCc
Q 005352 254 LTMKFSPD---GQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSES 330 (701)
Q Consensus 254 ~~l~fspd---g~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (701)
.+..|++. ...||.+.+||.|.++|.....
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~----------------------------------------------- 85 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIV----------------------------------------------- 85 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhh-----------------------------------------------
Confidence 44677653 4579999999999999976532
Q ss_pred cEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeee---ecCCCCeEEEEEeeCC
Q 005352 331 ACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRV---FPHSNYVTCVHFNPVD 406 (701)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~---~~h~~~V~~l~f~p~~ 406 (701)
|++.+..+.....|.+.|.++.|.|.. .|++++.|.++++||+.+..++.. +.|...|.+++|.|.+
T Consensus 86 ---------fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n 156 (720)
T KOG0321|consen 86 ---------FRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTN 156 (720)
T ss_pred ---------cchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCC
Confidence 111123345567899999999999954 999999999999999999988876 4599999999999988
Q ss_pred CCEEEEEEcCCcEEEEeCCCCcE----------------------------EEEecCCCcEEE---EEEeeCCCeEEEEe
Q 005352 407 DNYFISGSIDGKVRIWAVLSCHV----------------------------VDWVDIRQIVTA---VCYRPDGQGGIVGS 455 (701)
Q Consensus 407 ~~~l~sgs~dg~v~iwd~~~~~~----------------------------~~~~~~~~~i~~---i~~sp~g~~l~~gs 455 (701)
...|++|+.||.|.|||++-... ..+..+...|.+ +.+..|...|++++
T Consensus 157 ~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSag 236 (720)
T KOG0321|consen 157 PAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAG 236 (720)
T ss_pred CcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeecc
Confidence 99999999999999999864320 011223333554 55666888888887
Q ss_pred c-CCcEEEEECCCCeeeeeeeEEeecccCCC---CCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccc----eeeeccc
Q 005352 456 M-MGDCRFYNVSDNHLELDAEICVHSKKKAP---CKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVI----GKYKGLR 527 (701)
Q Consensus 456 ~-dg~v~i~d~~~~~~~~~~~~~~~~~~~~~---~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~----~~~~~~~ 527 (701)
. |+.|++||++.+................+ ...++++.... .|.+|++.+.|+.|++|++.... ..+.+..
T Consensus 237 a~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDs-sGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~ 315 (720)
T KOG0321|consen 237 AADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDS-SGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKL 315 (720)
T ss_pred CCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecC-CCCeEEEEecCCcEEEEeccccCcCchhhccCcc
Confidence 7 99999999998766544332222112222 34566666665 57888888889999999987433 3333332
Q ss_pred CCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCCC
Q 005352 528 RSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEP 564 (701)
Q Consensus 528 ~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~ 564 (701)
....-..-..+|++.+|++|+.|...++|.+.+.+.+
T Consensus 316 ~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~ 352 (720)
T KOG0321|consen 316 NSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAP 352 (720)
T ss_pred cceeeeeeecCCCCceEeccCCCcceeeeeecCccCC
Confidence 2223334457899999999999999999999998754
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.89 E-value=8e-21 Score=181.62 Aligned_cols=294 Identities=15% Similarity=0.217 Sum_probs=218.8
Q ss_pred CCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEc--CCcEE
Q 005352 345 KPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSI--DGKVR 420 (701)
Q Consensus 345 ~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~--dg~v~ 420 (701)
++-+.|..-...|.++.|+++| +|++++.|.+++|||..++++++++. +.-.|..++|.. ..+.++.++. |.+||
T Consensus 5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth-~~~~~i~sStk~d~tIr 83 (311)
T KOG1446|consen 5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTH-HSNTVIHSSTKEDDTIR 83 (311)
T ss_pred ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEec-CCceEEEccCCCCCceE
Confidence 3444555567889999999999 99999999999999999999999998 455688888887 6667776666 88999
Q ss_pred EEeCCCCcEEE-EecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCC
Q 005352 421 IWAVLSCHVVD-WVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDS 499 (701)
Q Consensus 421 iwd~~~~~~~~-~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~ 499 (701)
..++.+.+.++ +.+|...|++++.+|-+..+++++.|++|++||++..+++-... ...-..++|.| .+
T Consensus 84 yLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~----------~~~~pi~AfDp-~G 152 (311)
T KOG1446|consen 84 YLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLN----------LSGRPIAAFDP-EG 152 (311)
T ss_pred EEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEe----------cCCCcceeECC-CC
Confidence 99999999885 55789999999999999999999999999999999765432111 12234578888 78
Q ss_pred CEEEEEECCCcEEEEeCCcc----ceeeecc-cCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCCCCccccccccc
Q 005352 500 SKVMVSCADSQVRILQGPNV----IGKYKGL-RRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRS 574 (701)
Q Consensus 500 ~~l~~~s~dg~I~iwd~~~~----~~~~~~~-~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~ 574 (701)
-++|++.....|++||++.. ...+... ......+.+.|+|||++|+.++..+.+++.|--+|.... +
T Consensus 153 LifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~--------t 224 (311)
T KOG1446|consen 153 LIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKS--------T 224 (311)
T ss_pred cEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEee--------e
Confidence 88888888889999999853 3333332 345678999999999999999999999999987776211 1
Q ss_pred cccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCCcccCCCCccCCCCcccccccc
Q 005352 575 LERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLSSASA 654 (701)
Q Consensus 575 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~~~~ 654 (701)
++... ....-.-..+|.|+ ++-+++++.||++.+|+.+....+..+.+.
T Consensus 225 fs~~~-------------------------~~~~~~~~a~ftPd----s~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~-- 273 (311)
T KOG1446|consen 225 FSGYP-------------------------NAGNLPLSATFTPD----SKFVLSGSDDGTIHVWNLETGKKVAVLRGP-- 273 (311)
T ss_pred Eeecc-------------------------CCCCcceeEEECCC----CcEEEEecCCCcEEEEEcCCCcEeeEecCC--
Confidence 10000 00001123467897 777788888999999999888876665442
Q ss_pred chhhhhhhhhcccccccccCCCccEEEEecCCCeEeEE--eecCCCcC
Q 005352 655 LHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSF--LNYGLPIP 700 (701)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~g~~ivTgg~DG~Irvw--~~~g~p~~ 700 (701)
+ .+.+.++.+.+- -.++|||+. .+-.| ...++|.+
T Consensus 274 -~-------~~~~~~~~fnP~-~~mf~sa~s--~l~fw~p~~~~~~~~ 310 (311)
T KOG1446|consen 274 -N-------GGPVSCVRFNPR-YAMFVSASS--NLVFWLPDEDALPAH 310 (311)
T ss_pred -C-------CCCccccccCCc-eeeeeecCc--eEEEEeccccccCCC
Confidence 1 346667766666 566777765 55555 34566543
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-21 Score=203.74 Aligned_cols=280 Identities=18% Similarity=0.216 Sum_probs=218.6
Q ss_pred CccccccccccceEEEEEccCcc-----------chhhhc-cc------------------CceeccCCCcEEEEEEccC
Q 005352 212 NEEDAMFCSKVQRVKVYHCKKRS-----------KELSAL-YK------------------GQEIQAHDGSILTMKFSPD 261 (701)
Q Consensus 212 ~~~~~~~~~~d~~v~vw~~~~~~-----------~~~~~~-~~------------------~~~l~~H~~~I~~l~fspd 261 (701)
-..-+++|+.|++|++|++.... .++... +. ....-...-.|.+++.+|+
T Consensus 391 p~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~ 470 (1080)
T KOG1408|consen 391 PRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPD 470 (1080)
T ss_pred CccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCC
Confidence 34457889999999999986411 011100 00 0011223457999999999
Q ss_pred CCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCcccc
Q 005352 262 GQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFR 341 (701)
Q Consensus 262 g~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (701)
|++||+|..-|+++||++.+.+
T Consensus 471 gqhLAsGDr~GnlrVy~Lq~l~---------------------------------------------------------- 492 (1080)
T KOG1408|consen 471 GQHLASGDRGGNLRVYDLQELE---------------------------------------------------------- 492 (1080)
T ss_pred cceecccCccCceEEEEehhhh----------------------------------------------------------
Confidence 9999999999999999998753
Q ss_pred ccCCCeEEEcCCccCeEEEEEecCC----eEEEEECCCcEEEEECCCC-eeeeeec-CCCCeEEEEEeeCCC--CEEEEE
Q 005352 342 ILEKPLHEFHGHSGEILDLSWSKNN----YLLSASIDKTVRLWRVGND-HCLRVFP-HSNYVTCVHFNPVDD--NYFISG 413 (701)
Q Consensus 342 ~~~~~~~~~~~h~~~I~~l~~s~~~----~l~s~s~dg~I~iWd~~~~-~~~~~~~-h~~~V~~l~f~p~~~--~~l~sg 413 (701)
.+..+..|..+|.|+.|+... +|++++.|..|.|+|+... .+++++. |...|+++.|.. ++ ..++++
T Consensus 493 ----~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~-~gln~~Misc 567 (1080)
T KOG1408|consen 493 ----YTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFAC-NGLNRKMISC 567 (1080)
T ss_pred ----hhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEee-cCCceEEEec
Confidence 234456799999999998743 8999999999999999765 3445554 899999999988 55 678999
Q ss_pred EcCCcEEEEeCCC---CcEEE---EecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCC
Q 005352 414 SIDGKVRIWAVLS---CHVVD---WVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCK 487 (701)
Q Consensus 414 s~dg~v~iwd~~~---~~~~~---~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~ 487 (701)
+.|..|.+--.+. +.+.. ..-.+..+..++..|..+++++++.|..|+||++..++.... ......+.+
T Consensus 568 GADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~-----FKgs~~~eG 642 (1080)
T KOG1408|consen 568 GADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKS-----FKGSRDHEG 642 (1080)
T ss_pred cCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeee-----ecccccCCC
Confidence 9998776433221 22111 111245689999999999999999999999999999886532 223445667
Q ss_pred CeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 005352 488 RITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIG 560 (701)
Q Consensus 488 ~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~ 560 (701)
....+...| .+.++++.+.|.++.++|...........+|...|+.+.|.+|.++|++.+.||.|.||.+..
T Consensus 643 ~lIKv~lDP-SgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 643 DLIKVILDP-SGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred ceEEEEECC-CccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence 788899999 799999999999999999998888888888999999999999999999999999999999854
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-21 Score=204.58 Aligned_cols=237 Identities=16% Similarity=0.276 Sum_probs=199.0
Q ss_pred cCcceeeec--CccccccccccceEEEEEccCccchhhhcccCceecc-CCCcEEEEEEccCCCEEEEEeCCCcEEEEEe
Q 005352 203 QGEGERVRL--NEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQA-HDGSILTMKFSPDGQYLASAGDDGVVRLWQV 279 (701)
Q Consensus 203 ~~~~~~~~~--~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~-H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~ 279 (701)
...+.++.+ ++.++++|..+|.|.|||.... .....+.+ |.+.|-+++|. +..|.+|+.|+.|..+|+
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~-------k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dv 287 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQ-------KKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDV 287 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhc-------cccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEE
Confidence 344555554 4788999999999999986432 22234556 99999999997 668999999999999999
Q ss_pred ecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEE
Q 005352 280 VEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILD 359 (701)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~ 359 (701)
...+.. ...+.+|...|..
T Consensus 288 R~~~~~-------------------------------------------------------------~~~~~~H~qeVCg 306 (484)
T KOG0305|consen 288 RISQHV-------------------------------------------------------------VSTLQGHRQEVCG 306 (484)
T ss_pred ecchhh-------------------------------------------------------------hhhhhcccceeee
Confidence 876521 1136789999999
Q ss_pred EEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEE--cCCcEEEEeCCCCcEEEEecC
Q 005352 360 LSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGS--IDGKVRIWAVLSCHVVDWVDI 435 (701)
Q Consensus 360 l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs--~dg~v~iwd~~~~~~~~~~~~ 435 (701)
++|++++ +|++|+.|+.+.|||....+++..+. |...|.+++|+|....+||+|+ .|+.|++||..++..+.....
T Consensus 307 Lkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt 386 (484)
T KOG0305|consen 307 LKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDT 386 (484)
T ss_pred eEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccccc
Confidence 9999999 99999999999999997777666665 9999999999998899999976 689999999999999999999
Q ss_pred CCcEEEEEEeeCCCeEEEE--ecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEE
Q 005352 436 RQIVTAVCYRPDGQGGIVG--SMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRI 513 (701)
Q Consensus 436 ~~~i~~i~~sp~g~~l~~g--s~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~i 513 (701)
...|.++.|++..+.|+++ ..++.|.||+..+.+.. .....|..+|..++++| ++..+++|+.|.++++
T Consensus 387 gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~--------~~l~gH~~RVl~la~SP-dg~~i~t~a~DETlrf 457 (484)
T KOG0305|consen 387 GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLV--------AELLGHTSRVLYLALSP-DGETIVTGAADETLRF 457 (484)
T ss_pred CCceeeEEEcCCCCEEEEecCCCCCcEEEEecccccee--------eeecCCcceeEEEEECC-CCCEEEEecccCcEEe
Confidence 9999999999999888774 45778999999874432 23566788999999999 7999999999999999
Q ss_pred EeCCc
Q 005352 514 LQGPN 518 (701)
Q Consensus 514 wd~~~ 518 (701)
|++-.
T Consensus 458 w~~f~ 462 (484)
T KOG0305|consen 458 WNLFD 462 (484)
T ss_pred ccccC
Confidence 99764
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-21 Score=185.24 Aligned_cols=297 Identities=19% Similarity=0.250 Sum_probs=203.1
Q ss_pred eEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCe-----eeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEE
Q 005352 347 LHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDH-----CLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVR 420 (701)
Q Consensus 347 ~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~-----~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~ 420 (701)
+..+++|.+.|++++|+.+| +|+|++.|++|+||+++... +++.--.-+..+.+.|.|....++++.-...+++
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 45678999999999999999 99999999999999987642 2222223346788999994445555666667899
Q ss_pred EEeCCCCc-------EEEE------ecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCC
Q 005352 421 IWAVLSCH-------VVDW------VDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCK 487 (701)
Q Consensus 421 iwd~~~~~-------~~~~------~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~ 487 (701)
+|.+...+ .+.+ ..|.-.+..+-...++.+|++++.|..|.+|++. ++.... ......
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~--------idtnq~ 229 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQS--------IDTNQS 229 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeee--------eccccc
Confidence 99775432 1111 1234456666677788999999999999999998 443221 111223
Q ss_pred CeeEEEEecCCCCEEEEEECCCcEEEEeC--------CccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 005352 488 RITGFQFLPQDSSKVMVSCADSQVRILQG--------PNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCI 559 (701)
Q Consensus 488 ~i~~l~~~p~~~~~l~~~s~dg~I~iwd~--------~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~ 559 (701)
.-+..+.+| ++.++++++..-.|++|.. ......|...+|...|..++|+++...++|.+.||+++|||.+
T Consensus 230 ~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 230 SNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTD 308 (420)
T ss_pred cccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeecc
Confidence 345678899 8999999999999999984 2455667777899999999999999999999999999999976
Q ss_pred CCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCCcccCCC
Q 005352 560 GHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWP 639 (701)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~ 639 (701)
-..+.. ..++.++.. +.+++ .....+..|.++|.+.. |+ .+....++.+.
T Consensus 309 VrY~~~-qDpk~Lk~g-----------------------~~pl~-aag~~p~RL~lsP~g~~----lA-~s~gs~l~~~~ 358 (420)
T KOG2096|consen 309 VRYEAG-QDPKILKEG-----------------------SAPLH-AAGSEPVRLELSPSGDS----LA-VSFGSDLKVFA 358 (420)
T ss_pred ceEecC-CCchHhhcC-----------------------Ccchh-hcCCCceEEEeCCCCcE----EE-eecCCceEEEE
Confidence 433210 011111111 01111 11222335677886333 22 23444566666
Q ss_pred CccCCCCccccccccchhhhhhhhhcccccccccCCCccEEEEecCCCeEeEEeec
Q 005352 640 EEKLPALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFLNY 695 (701)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivTgg~DG~Irvw~~~ 695 (701)
.+.....-.+ .+.+...+.+++++++ |++|+|+| |..+|+++|.
T Consensus 359 se~g~~~~~~----------e~~h~~~Is~is~~~~-g~~~atcG-dr~vrv~~nt 402 (420)
T KOG2096|consen 359 SEDGKDYPEL----------EDIHSTTISSISYSSD-GKYIATCG-DRYVRVIRNT 402 (420)
T ss_pred cccCccchhH----------HHhhcCceeeEEecCC-CcEEeeec-ceeeeeecCC
Confidence 5554432221 2233567888899999 99999999 6899999975
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.4e-22 Score=205.47 Aligned_cols=238 Identities=18% Similarity=0.306 Sum_probs=197.7
Q ss_pred ceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEE
Q 005352 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (701)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (701)
+++.||+..|..+++.+.. .++++|.||++++|+-...+.
T Consensus 8 ~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~--------------------------------------- 47 (745)
T KOG0301|consen 8 HELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQY--------------------------------------- 47 (745)
T ss_pred EEeccCccchheeEecCCe-EEeecCCCCceeeeeccCccc---------------------------------------
Confidence 5788999999999987554 899999999999999655432
Q ss_pred eeecCCccEEEcCCccccccCCCeEEEcCCccCeEE-EEEec-CC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEE
Q 005352 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILD-LSWSK-NN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTC 399 (701)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~-l~~s~-~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~ 399 (701)
...+.+.+|.+.|.. +++-+ ++ .+++|++|++|.+|.+.+..++.++. |...|.|
T Consensus 48 ---------------------l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ 106 (745)
T KOG0301|consen 48 ---------------------LETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCS 106 (745)
T ss_pred ---------------------ccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceee
Confidence 223456778777777 77765 33 89999999999999999999999887 9999999
Q ss_pred EEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEee
Q 005352 400 VHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVH 479 (701)
Q Consensus 400 l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~ 479 (701)
+.... ++. +++|+.|.++++|-+.... ..+.+|...|+++..-|.+ .+++|+.|.+|++|.-.+. .
T Consensus 107 ls~~~-~~~-~iSgSWD~TakvW~~~~l~-~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~~~----------l 172 (745)
T KOG0301|consen 107 LSIGE-DGT-LISGSWDSTAKVWRIGELV-YSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGGTL----------L 172 (745)
T ss_pred eecCC-cCc-eEecccccceEEecchhhh-cccCCcchheeeeeecCCC-cEEeccCcceeeeccCCch----------h
Confidence 99775 554 9999999999999764322 2477899999999999988 8899999999999987432 1
Q ss_pred cccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 005352 480 SKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCI 559 (701)
Q Consensus 480 ~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~ 559 (701)
.....|..-|.++++.+ ...+++++.||.|++|++ +....+..++|...|++++..+++..|+|+++|++++||+..
T Consensus 173 ~tf~gHtD~VRgL~vl~--~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 173 KTFSGHTDCVRGLAVLD--DSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred hhhccchhheeeeEEec--CCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC
Confidence 12456888999999998 468999999999999999 455566667799999999988889999999999999999966
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.5e-21 Score=183.87 Aligned_cols=242 Identities=17% Similarity=0.243 Sum_probs=188.8
Q ss_pred EEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccE
Q 005352 253 ILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESAC 332 (701)
Q Consensus 253 I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (701)
-.|+.|++.|.+||+|..||.|.|||+.+..
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~------------------------------------------------- 56 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR------------------------------------------------- 56 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccc-------------------------------------------------
Confidence 6899999999999999999999999997752
Q ss_pred EEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEE
Q 005352 333 VVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFI 411 (701)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~ 411 (701)
+-..+.+|..+|++++||++| .|+|+|.|..|++||+..+.+++.+....+|+.+.|+|.+.+.++
T Consensus 57 -------------iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~v 123 (405)
T KOG1273|consen 57 -------------IARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCV 123 (405)
T ss_pred -------------hhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccCccceeeeccccCCeEE
Confidence 223457899999999999999 999999999999999999999999999999999999997777777
Q ss_pred EEEcCCcEEEEeCCCCcEEEEe--c---CCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCC
Q 005352 412 SGSIDGKVRIWAVLSCHVVDWV--D---IRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPC 486 (701)
Q Consensus 412 sgs~dg~v~iwd~~~~~~~~~~--~---~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~ 486 (701)
+.-.+..-.+-++..+....+. . ......+..|.+.|+++++|+..|.+.+|+..+.++.....+.. .
T Consensus 124 a~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits-------~ 196 (405)
T KOG1273|consen 124 ATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITS-------V 196 (405)
T ss_pred EEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeech-------h
Confidence 7766666666666543222111 1 11223344689999999999999999999999887654433322 3
Q ss_pred CCeeEEEEecCCCCEEEEEECCCcEEEEeCCccce-----------eeecccCCCCeEEEEEecCCCEEEEEeC-CCcEE
Q 005352 487 KRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIG-----------KYKGLRRSGNQLSACFTSDGKHIVSAGE-DSNVY 554 (701)
Q Consensus 487 ~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~-----------~~~~~~~~~~v~~l~~s~dg~~l~sgs~-Dg~I~ 554 (701)
..|..+.++. .+..|++.+.|..||.|++..... +++-..+...=.+++|+.+|.|++.++. -..+|
T Consensus 197 ~~IK~I~~s~-~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLY 275 (405)
T KOG1273|consen 197 QAIKQIIVSR-KGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALY 275 (405)
T ss_pred eeeeEEEEec-cCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEE
Confidence 5577888887 789999999999999999763221 2222223444568899999999988863 35699
Q ss_pred EEeCCCCCCC
Q 005352 555 MWNCIGHEEP 564 (701)
Q Consensus 555 iWd~~~~~~~ 564 (701)
||.-..|...
T Consensus 276 IWE~~~GsLV 285 (405)
T KOG1273|consen 276 IWEKSIGSLV 285 (405)
T ss_pred EEecCCccee
Confidence 9998887743
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.7e-20 Score=190.77 Aligned_cols=249 Identities=16% Similarity=0.240 Sum_probs=204.8
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCC
Q 005352 250 DGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSE 329 (701)
Q Consensus 250 ~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (701)
..+|.+|+|+...+.||.+-.||.|.||++..+=..
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~-------------------------------------------- 60 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFL-------------------------------------------- 60 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCcee--------------------------------------------
Confidence 467999999999999999999999999999774211
Q ss_pred ccEEEcCCccccccCCCeEEEcCC-ccCeEEEEEecCCeEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCC
Q 005352 330 SACVVFPPKVFRILEKPLHEFHGH-SGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDD 407 (701)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~h-~~~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~ 407 (701)
...+.++ ...|.+|+|++.+.|++.+.+|.|.-||+.+.+.+..+. ..+.|.+++.+| .+
T Consensus 61 -----------------~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p-~~ 122 (691)
T KOG2048|consen 61 -----------------EPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINP-EN 122 (691)
T ss_pred -----------------eEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCC-cc
Confidence 1223333 457999999988899999999999999999999988887 678999999999 88
Q ss_pred CEEEEEEcCCcEEEEeCCCCcEEEE---ecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCC
Q 005352 408 NYFISGSIDGKVRIWAVLSCHVVDW---VDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKA 484 (701)
Q Consensus 408 ~~l~sgs~dg~v~iwd~~~~~~~~~---~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~ 484 (701)
..++.|+.||.+..+++..+.+... ....+.+.+++|+|++..++.|+.||.|++||...+.-.......+....+.
T Consensus 123 ~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~ 202 (691)
T KOG2048|consen 123 TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKR 202 (691)
T ss_pred ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccC
Confidence 9999999999888888887766532 2335789999999999999999999999999999887655333333333333
Q ss_pred CCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 485 PCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 485 ~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
...-|.++.|.. ...|++|..-|+|.+||.......-....|...|.+++.++++.++++++.|+.|..|...+.+
T Consensus 203 ~~~iVWSv~~Lr--d~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~ 278 (691)
T KOG2048|consen 203 EPTIVWSVLFLR--DSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNK 278 (691)
T ss_pred CceEEEEEEEee--cCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCc
Confidence 455678888885 5789999999999999987655544444489999999999999999999999999999987764
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3e-21 Score=192.72 Aligned_cols=254 Identities=15% Similarity=0.167 Sum_probs=199.0
Q ss_pred cceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEe
Q 005352 222 VQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFT 301 (701)
Q Consensus 222 d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~ 301 (701)
-..+.+|.+.+......... -.++|.|++-+|+|.+|+.|+..|.|.+|.+.+|..
T Consensus 60 rp~l~vw~i~k~~~~~q~~v-------~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~L----------------- 115 (476)
T KOG0646|consen 60 RPLLHVWEILKKDQVVQYIV-------LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGIL----------------- 115 (476)
T ss_pred CccccccccCchhhhhhhcc-------cccceeeeecCCCceEEEeecccCcEEEEEeccccH-----------------
Confidence 34788998876554432111 357899999999999999999999999999999853
Q ss_pred eccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEE
Q 005352 302 VNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLW 380 (701)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iW 380 (701)
+..+.+|-..|+||.|+.|+ +|+|||.||.|.+|
T Consensus 116 ---------------------------------------------L~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW 150 (476)
T KOG0646|consen 116 ---------------------------------------------LNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVW 150 (476)
T ss_pred ---------------------------------------------HHHHHhhccceeEEEEeCCCcEEEecCCCccEEEE
Confidence 34457799999999999999 99999999999999
Q ss_pred ECC---------CCeeeeeec-CCCCeEEEEEeeC-CCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCC
Q 005352 381 RVG---------NDHCLRVFP-HSNYVTCVHFNPV-DDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQ 449 (701)
Q Consensus 381 d~~---------~~~~~~~~~-h~~~V~~l~f~p~-~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~ 449 (701)
.+. +-+++..|. |.-+|+.+...+. ...++++++.|.++++||+..+.++.....+..+++++.+|-++
T Consensus 151 ~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~ 230 (476)
T KOG0646|consen 151 LLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAER 230 (476)
T ss_pred EEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEccccc
Confidence 863 234566665 8999999998762 35689999999999999999999999889999999999999999
Q ss_pred eEEEEecCCcEEEEECCCCeeeee--------eeEEeecccCCCCC--CeeEEEEecCCCCEEEEEECCCcEEEEeCCcc
Q 005352 450 GGIVGSMMGDCRFYNVSDNHLELD--------AEICVHSKKKAPCK--RITGFQFLPQDSSKVMVSCADSQVRILQGPNV 519 (701)
Q Consensus 450 ~l~~gs~dg~v~i~d~~~~~~~~~--------~~~~~~~~~~~~~~--~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~ 519 (701)
.+++|+.+|.|.+.++........ ...........|.+ .|+|++++- ++.+|++|+.||+|+|||+...
T Consensus 231 ~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~-DgtlLlSGd~dg~VcvWdi~S~ 309 (476)
T KOG0646|consen 231 VVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIST-DGTLLLSGDEDGKVCVWDIYSK 309 (476)
T ss_pred EEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEec-CccEEEeeCCCCCEEEEecchH
Confidence 999999999999988765431100 00001111233444 899999999 8999999999999999998765
Q ss_pred ceeeecccCCCCeEEEEEecCCCEEE
Q 005352 520 IGKYKGLRRSGNQLSACFTSDGKHIV 545 (701)
Q Consensus 520 ~~~~~~~~~~~~v~~l~~s~dg~~l~ 545 (701)
...-......++|+.+.+.|-.+-++
T Consensus 310 Q~iRtl~~~kgpVtnL~i~~~~~~~~ 335 (476)
T KOG0646|consen 310 QCIRTLQTSKGPVTNLQINPLERGII 335 (476)
T ss_pred HHHHHHhhhccccceeEeecccccee
Confidence 44433333678899999876543333
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-20 Score=178.60 Aligned_cols=252 Identities=20% Similarity=0.280 Sum_probs=188.0
Q ss_pred ccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeee
Q 005352 247 QAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRR 326 (701)
Q Consensus 247 ~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (701)
.+|+.-|.++.|.+.|+.+|||+.|++|+|||.......-
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W---------------------------------------- 49 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTW---------------------------------------- 49 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCce----------------------------------------
Confidence 4699999999999999999999999999999975442100
Q ss_pred cCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecC--C-eEEEEECCCcEEEEECCCC-------e--eeeee-cC
Q 005352 327 TSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN--N-YLLSASIDKTVRLWRVGND-------H--CLRVF-PH 393 (701)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~--~-~l~s~s~dg~I~iWd~~~~-------~--~~~~~-~h 393 (701)
......+.|.+.|..+.|.+. | .+++++.|+++.||.-... + ...++ ..
T Consensus 50 ------------------~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~Ds 111 (361)
T KOG2445|consen 50 ------------------SCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDS 111 (361)
T ss_pred ------------------EEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecC
Confidence 122345779999999999775 3 8999999999999965211 1 11222 26
Q ss_pred CCCeEEEEEeeC-CCCEEEEEEcCCcEEEEeCCCCcEE------EE--------ecCCCcEEEEEEeeC---CCeEEEEe
Q 005352 394 SNYVTCVHFNPV-DDNYFISGSIDGKVRIWAVLSCHVV------DW--------VDIRQIVTAVCYRPD---GQGGIVGS 455 (701)
Q Consensus 394 ~~~V~~l~f~p~-~~~~l~sgs~dg~v~iwd~~~~~~~------~~--------~~~~~~i~~i~~sp~---g~~l~~gs 455 (701)
...|+.++|.|. -+-.|++++.||.||||+....--+ .- -.+..+..|+.|+|. ...|++|+
T Consensus 112 rssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs 191 (361)
T KOG2445|consen 112 RSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGS 191 (361)
T ss_pred CcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEc
Confidence 788999999993 3567899999999999987543211 11 124566889999983 46788888
Q ss_pred cC-----CcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCC---CEEEEEECCCcEEEEeCCcc--------
Q 005352 456 MM-----GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDS---SKVMVSCADSQVRILQGPNV-------- 519 (701)
Q Consensus 456 ~d-----g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~---~~l~~~s~dg~I~iwd~~~~-------- 519 (701)
.+ +.+.||....+........ ....+..+|+.++|.|+-+ .+|++++.|| |+||.++..
T Consensus 192 ~e~a~~~~~~~Iye~~e~~rKw~kva----~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee 266 (361)
T KOG2445|consen 192 DEDAPHLNKVKIYEYNENGRKWLKVA----ELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEE 266 (361)
T ss_pred ccCCccccceEEEEecCCcceeeeeh----hcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhc
Confidence 76 5788998876653332211 2336778999999999643 5789999999 999997621
Q ss_pred ------------ceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 005352 520 ------------IGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGH 561 (701)
Q Consensus 520 ------------~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~ 561 (701)
...-....|.+.|..+.|+-.|..|++.|.||.|++|..+-.
T Consensus 267 ~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~ 320 (361)
T KOG2445|consen 267 VLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYN 320 (361)
T ss_pred ccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhh
Confidence 111123348899999999999999999999999999985543
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-20 Score=194.69 Aligned_cols=280 Identities=17% Similarity=0.223 Sum_probs=201.9
Q ss_pred ccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCC
Q 005352 215 DAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEID 294 (701)
Q Consensus 215 ~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~ 294 (701)
.|+.+..+|.|.+++.......+... ......+|.+.|..++|.|....|++++.|.++++||+.+.....
T Consensus 66 iLavadE~G~i~l~dt~~~~fr~ee~-~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G-------- 136 (720)
T KOG0321|consen 66 ILAVADEDGGIILFDTKSIVFRLEER-QLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVG-------- 136 (720)
T ss_pred eEEEecCCCceeeecchhhhcchhhh-hhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeec--------
Confidence 35558889999999976544332111 113467899999999999966789999999999999998875321
Q ss_pred CceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC--eEEEEE
Q 005352 295 PSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLSAS 372 (701)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~--~l~s~s 372 (701)
...+.||...|.+++|++.+ .|++|+
T Consensus 137 ----------------------------------------------------~~~~~GH~~SvkS~cf~~~n~~vF~tGg 164 (720)
T KOG0321|consen 137 ----------------------------------------------------GRLNLGHTGSVKSECFMPTNPAVFCTGG 164 (720)
T ss_pred ----------------------------------------------------ceeecccccccchhhhccCCCcceeecc
Confidence 12467899999999999988 999999
Q ss_pred CCCcEEEEECCCCe--------------------eeeee--------cCCC----CeEEEEEeeCCCCEEEEEEc-CCcE
Q 005352 373 IDKTVRLWRVGNDH--------------------CLRVF--------PHSN----YVTCVHFNPVDDNYFISGSI-DGKV 419 (701)
Q Consensus 373 ~dg~I~iWd~~~~~--------------------~~~~~--------~h~~----~V~~l~f~p~~~~~l~sgs~-dg~v 419 (701)
.||.|.|||++... ..+.. .+.. .|+.+.|- |+..||+++. |+.|
T Consensus 165 RDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fk--De~tlaSaga~D~~i 242 (720)
T KOG0321|consen 165 RDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFK--DESTLASAGAADSTI 242 (720)
T ss_pred CCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEe--ccceeeeccCCCcce
Confidence 99999999986432 00000 0222 35555554 8889999887 9999
Q ss_pred EEEeCCCCcEEE---------EecC---CCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCC
Q 005352 420 RIWAVLSCHVVD---------WVDI---RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCK 487 (701)
Q Consensus 420 ~iwd~~~~~~~~---------~~~~---~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~ 487 (701)
+|||+++..... +..+ ...+.+++....|.+|++.+.|+.|++|++..........+. .....
T Consensus 243 KVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~s-----g~~~~ 317 (720)
T KOG0321|consen 243 KVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFS-----GKLNS 317 (720)
T ss_pred EEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhcc-----Ccccc
Confidence 999998764331 1112 234778888888999999999999999999875432211110 00011
Q ss_pred C-eeEEEEecCCCCEEEEEECCCcEEEEeCCccceee-ecccCCCCeEEEEEecCC-CEEEEEeCCCcEEEEeCCCCCC
Q 005352 488 R-ITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKY-KGLRRSGNQLSACFTSDG-KHIVSAGEDSNVYMWNCIGHEE 563 (701)
Q Consensus 488 ~-i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~-~~~~~~~~v~~l~~s~dg-~~l~sgs~Dg~I~iWd~~~~~~ 563 (701)
. ...-..+| ++.++++|+.|...++|.+....... ...+|...|++++|.|.. .-++|+++|..++||++.++-+
T Consensus 318 sf~vks~lSp-d~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l~ 395 (720)
T KOG0321|consen 318 SFYVKSELSP-DDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGLE 395 (720)
T ss_pred eeeeeeecCC-CCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCchh
Confidence 1 12223466 78999999999999999998655433 234588999999998743 3577779999999999977654
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.9e-19 Score=187.34 Aligned_cols=279 Identities=16% Similarity=0.246 Sum_probs=216.8
Q ss_pred ccCcceeeecC--ccccccccccceEEEEEccCccchhhhcccCceeccC-CCcEEEEEEccCCCEEEEEeCCCcEEEEE
Q 005352 202 KQGEGERVRLN--EEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAH-DGSILTMKFSPDGQYLASAGDDGVVRLWQ 278 (701)
Q Consensus 202 ~~~~~~~~~~~--~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H-~~~I~~l~fspdg~~Lasgs~Dg~I~iWd 278 (701)
...++.+++++ ...++++..+|.|.||+... ..+....+.+| .+.|-+++|+ ++..|++.+.+|.|.-||
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~------~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwD 96 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSN------NWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWD 96 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCC------CceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEe
Confidence 44566665554 45788899999999998654 23334456666 4689999999 455889999999999999
Q ss_pred eecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeE
Q 005352 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEIL 358 (701)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~ 358 (701)
+.+.+. ...+....+.|.
T Consensus 97 l~~lk~--------------------------------------------------------------~~~~d~~gg~IW 114 (691)
T KOG2048|consen 97 LHTLKQ--------------------------------------------------------------KYNIDSNGGAIW 114 (691)
T ss_pred cccCce--------------------------------------------------------------eEEecCCCccee
Confidence 988753 334455668999
Q ss_pred EEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec---CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEe-
Q 005352 359 DLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP---HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV- 433 (701)
Q Consensus 359 ~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~---h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~- 433 (701)
+++.+|.+ .++.|+.||.+...+...++...... .++.|.++.|+| ++..+++|+.||.|++||..+++.+...
T Consensus 115 siai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~-~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~ 193 (691)
T KOG2048|consen 115 SIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNP-TGTKIAGGSIDGVIRIWDVKSGQTLHIIT 193 (691)
T ss_pred EEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecC-CccEEEecccCceEEEEEcCCCceEEEee
Confidence 99999998 99999999988888887776654432 668999999999 9999999999999999999998766522
Q ss_pred ----cC----CCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEE
Q 005352 434 ----DI----RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVS 505 (701)
Q Consensus 434 ----~~----~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~ 505 (701)
.. ...|+++.|-.+ ..|++|...|+|.+||...+.+.. ....|...|.+++..+ +++.++++
T Consensus 194 ~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiq--------S~~~h~adVl~Lav~~-~~d~vfsa 263 (691)
T KOG2048|consen 194 MQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQ--------SHSCHDADVLALAVAD-NEDRVFSA 263 (691)
T ss_pred ecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhh--------hhhhhhcceeEEEEcC-CCCeEEEc
Confidence 21 234778887755 478999999999999998876543 2445667899999998 78899999
Q ss_pred ECCCcEEEEeCCccce----eeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 506 CADSQVRILQGPNVIG----KYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 506 s~dg~I~iwd~~~~~~----~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
+.|+.|.-|....... ......|...|.+++..++ .|++|+.|..+.+=.....+
T Consensus 264 Gvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~ 322 (691)
T KOG2048|consen 264 GVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFK 322 (691)
T ss_pred cCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccccC
Confidence 9999998887664433 2222337788999998877 89999999999987766533
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-21 Score=196.55 Aligned_cols=244 Identities=17% Similarity=0.280 Sum_probs=201.4
Q ss_pred ccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeee
Q 005352 247 QAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRR 326 (701)
Q Consensus 247 ~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (701)
-+|..-|.++..|...+++.|||. |.|+|||+......
T Consensus 416 L~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k----------------------------------------- 453 (705)
T KOG0639|consen 416 LAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNK----------------------------------------- 453 (705)
T ss_pred hccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCC-----------------------------------------
Confidence 468899999999999999999997 78999999764210
Q ss_pred cCCccEEEcCCccccccCCCeEEEc--CCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec---CCCCeEEE
Q 005352 327 TSESACVVFPPKVFRILEKPLHEFH--GHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP---HSNYVTCV 400 (701)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~---h~~~V~~l 400 (701)
.|+..+. ....-|.++...|++ .|++|+.-.++.|||+.......... ..-.++++
T Consensus 454 ------------------~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyAL 515 (705)
T KOG0639|consen 454 ------------------SPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYAL 515 (705)
T ss_pred ------------------CccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhh
Confidence 1111111 234578899999999 99999999999999998765433332 23457889
Q ss_pred EEeeCCCCEEEEEEcCCcEEEEeCCCCcEE-EEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEee
Q 005352 401 HFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVH 479 (701)
Q Consensus 401 ~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~-~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~ 479 (701)
+.+| |.++.++++.||.|.|||+.+..++ .+.+|.+.+.||.++++|..|.+|+-|.+|+.||++++...+...
T Consensus 516 a~sp-DakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd---- 590 (705)
T KOG0639|consen 516 AISP-DAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD---- 590 (705)
T ss_pred hcCC-ccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh----
Confidence 9999 9999999999999999999998877 567899999999999999999999999999999999887554332
Q ss_pred cccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 005352 480 SKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCI 559 (701)
Q Consensus 480 ~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~ 559 (701)
....|.++.++| .+.++++|-.++.+.|..... ..++..+.|..-|.++.|.+.|+++++.+.|..+..|..-
T Consensus 591 -----F~SQIfSLg~cP-~~dWlavGMens~vevlh~sk-p~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtP 663 (705)
T KOG0639|consen 591 -----FSSQIFSLGYCP-TGDWLAVGMENSNVEVLHTSK-PEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTP 663 (705)
T ss_pred -----hhhhheecccCC-CccceeeecccCcEEEEecCC-ccceeecccccEEEEEEecccCceeeecCchhhhhhccCc
Confidence 235689999999 789999999999999988754 4456666799999999999999999999999999999866
Q ss_pred CCC
Q 005352 560 GHE 562 (701)
Q Consensus 560 ~~~ 562 (701)
-+.
T Consensus 664 yGa 666 (705)
T KOG0639|consen 664 YGA 666 (705)
T ss_pred ccc
Confidence 554
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.8e-21 Score=186.91 Aligned_cols=259 Identities=22% Similarity=0.275 Sum_probs=198.2
Q ss_pred eccCCCcEEEEEEccCC--CEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEE
Q 005352 246 IQAHDGSILTMKFSPDG--QYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (701)
Q Consensus 246 l~~H~~~I~~l~fspdg--~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (701)
..+|.+.|..+.-++-| .+.|+-+..|.|+||++...-. .+.-+.. .
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~--~l~~~~~--------------------------~--- 195 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLN--ALSEPGL--------------------------E--- 195 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhh--hhcCccc--------------------------c---
Confidence 45688888888887754 5677778899999999865311 0000000 0
Q ss_pred eeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecC--CeEEEEECCCcEEEEECCCCeeee----eecCCCCe
Q 005352 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN--NYLLSASIDKTVRLWRVGNDHCLR----VFPHSNYV 397 (701)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~--~~l~s~s~dg~I~iWd~~~~~~~~----~~~h~~~V 397 (701)
+-....+|+.++.+|...=+.|+|||- |.|++|..-+.|++|...++.-.. ...|+..|
T Consensus 196 ---------------~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SV 260 (440)
T KOG0302|consen 196 ---------------VKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSV 260 (440)
T ss_pred ---------------ccccccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccch
Confidence 000112789999999999999999994 489999999999999998875432 22399999
Q ss_pred EEEEEeeCCCCEEEEEEcCCcEEEEeCCCC---cEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeee
Q 005352 398 TCVHFNPVDDNYFISGSIDGKVRIWAVLSC---HVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDA 474 (701)
Q Consensus 398 ~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~---~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~ 474 (701)
-.++|+|.....|++|+.||+|+|||++.+ .++....|.+.|+.|.|+..-.+|++|+.||+++|||++.-+..
T Consensus 261 EDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~--- 337 (440)
T KOG0302|consen 261 EDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSG--- 337 (440)
T ss_pred hhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCC---
Confidence 999999988899999999999999999988 56667789999999999998889999999999999999975543
Q ss_pred eEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCcc------------------ceeeecccCCCCeEEEE
Q 005352 475 EICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV------------------IGKYKGLRRSGNQLSAC 536 (701)
Q Consensus 475 ~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~------------------~~~~~~~~~~~~v~~l~ 536 (701)
......+.|..+|+++.|+|.+...|++++.|.+|.|||+.-. .+.+..+.....+..+.
T Consensus 338 --~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~Kevh 415 (440)
T KOG0302|consen 338 --QPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVH 415 (440)
T ss_pred --CcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhhe
Confidence 1112245577899999999999999999999999999997411 11222222455677888
Q ss_pred EecCC-CEEEEEeCCCcEEEE
Q 005352 537 FTSDG-KHIVSAGEDSNVYMW 556 (701)
Q Consensus 537 ~s~dg-~~l~sgs~Dg~I~iW 556 (701)
|++.- .+|++.+.|| +.||
T Consensus 416 WH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 416 WHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred eccCCCCeEEEecccc-eeEE
Confidence 98854 5788888888 4444
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.6e-21 Score=190.27 Aligned_cols=205 Identities=21% Similarity=0.297 Sum_probs=166.0
Q ss_pred EcCCccCeEEEEEecCC--eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCC
Q 005352 350 FHGHSGEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS 426 (701)
Q Consensus 350 ~~~h~~~I~~l~~s~~~--~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~ 426 (701)
-.+|++.|.+|+|+..- .|++||.|.+|++||+.++++..++. |.+.|.+++|+|....+|++|+.|++|.+.|.+.
T Consensus 239 ~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~ 318 (463)
T KOG0270|consen 239 ASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRD 318 (463)
T ss_pred cccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccC
Confidence 35799999999998875 99999999999999999999999998 8899999999998899999999999999999995
Q ss_pred Cc-EEEEecCCCcEEEEEEeeCC-CeEEEEecCCcEEEEECCCCe-eeeeeeEEeecccCCCCCCeeEEEEecCCCCEEE
Q 005352 427 CH-VVDWVDIRQIVTAVCYRPDG-QGGIVGSMMGDCRFYNVSDNH-LELDAEICVHSKKKAPCKRITGFQFLPQDSSKVM 503 (701)
Q Consensus 427 ~~-~~~~~~~~~~i~~i~~sp~g-~~l~~gs~dg~v~i~d~~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~ 503 (701)
.. .-......+.|-.++|.|.. ..+++++.||+|+-+|++... ... ..+.|...|.++++++..+.+++
T Consensus 319 ~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vw--------t~~AHd~~ISgl~~n~~~p~~l~ 390 (463)
T KOG0270|consen 319 PSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVW--------TLKAHDDEISGLSVNIQTPGLLS 390 (463)
T ss_pred ccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCcee--------EEEeccCCcceEEecCCCCccee
Confidence 32 22344567789999999954 578888999999999999864 221 24557789999999998999999
Q ss_pred EEECCCcEEEEeCCccceeeec--ccCCCCeEEEEEecCC-CEEEEEeCCCcEEEEeCCCCC
Q 005352 504 VSCADSQVRILQGPNVIGKYKG--LRRSGNQLSACFTSDG-KHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 504 ~~s~dg~I~iwd~~~~~~~~~~--~~~~~~v~~l~~s~dg-~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
+++.|+.|++|++......... ...-+...|.++.|+- -+++.|+..+.++|||+.+..
T Consensus 391 t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~ 452 (463)
T KOG0270|consen 391 TASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNS 452 (463)
T ss_pred eccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccCh
Confidence 9999999999998643322211 1122345666777765 456778888899999998876
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-20 Score=177.10 Aligned_cols=292 Identities=15% Similarity=0.211 Sum_probs=211.3
Q ss_pred ecccCcceeeecC---ccccccccccceEEEEEccCcc-chhhhcc-------cCceeccCCCcEEEEEEcc-CCCEEEE
Q 005352 200 VDKQGEGERVRLN---EEDAMFCSKVQRVKVYHCKKRS-KELSALY-------KGQEIQAHDGSILTMKFSP-DGQYLAS 267 (701)
Q Consensus 200 ~~~~~~~~~~~~~---~~~~~~~~~d~~v~vw~~~~~~-~~~~~~~-------~~~~l~~H~~~I~~l~fsp-dg~~Las 267 (701)
-.|.+.+++++.+ +.+++.|+.|+.|.|||++... .+...+. ..+.-.+|+-.|.++.|-| |.-.+.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 3567788877654 4678889999999999996543 1211111 1223357888999999999 5557888
Q ss_pred EeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCe
Q 005352 268 AGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPL 347 (701)
Q Consensus 268 gs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (701)
++-|.+++|||..+.+....|+
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~---------------------------------------------------------- 141 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFK---------------------------------------------------------- 141 (397)
T ss_pred ccccceEEEeecccceeeEEee----------------------------------------------------------
Confidence 9999999999998876433332
Q ss_pred EEEcCCccCeEEEEEecC---C-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEE
Q 005352 348 HEFHGHSGEILDLSWSKN---N-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIW 422 (701)
Q Consensus 348 ~~~~~h~~~I~~l~~s~~---~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iw 422 (701)
-.+.|..-+|+|- . ++++|..+-.|++-|+.+|.+..++. |.+.|.++.|+|..+-.|++|+.||.|++|
T Consensus 142 -----me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlW 216 (397)
T KOG4283|consen 142 -----MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLW 216 (397)
T ss_pred -----cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEE
Confidence 2234555566663 2 78888899999999999999999987 999999999999777789999999999999
Q ss_pred eCCCCc-EE--------------E-EecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCC
Q 005352 423 AVLSCH-VV--------------D-WVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPC 486 (701)
Q Consensus 423 d~~~~~-~~--------------~-~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~ 486 (701)
|++... +. + -..|.+.+..++|..++.++++.+.|..+++|+...+...+............+
T Consensus 217 DiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~- 295 (397)
T KOG4283|consen 217 DIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTS- 295 (397)
T ss_pred EeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCccccccccccccccccc-
Confidence 997531 11 1 234667899999999999999999999999999988765432211111111111
Q ss_pred CCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 005352 487 KRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNC 558 (701)
Q Consensus 487 ~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~ 558 (701)
..+. +. +- +...++---.++.+.++.+-.....-....|...+.+..+.|+-+...+|..|+.|+.|-.
T Consensus 296 ~~~~-~~-~~-~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 296 FAVH-IQ-SM-DSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred ceEE-Ee-ec-ccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhccccCCccccccc
Confidence 1111 22 11 2334444444577777777655554444457788999999999999999999999999987
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-21 Score=205.54 Aligned_cols=234 Identities=18% Similarity=0.297 Sum_probs=185.2
Q ss_pred ecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccC-CCEEEEEeCCCcEEEEEeecCeeeeee
Q 005352 210 RLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPD-GQYLASAGDDGVVRLWQVVEDERLTEV 288 (701)
Q Consensus 210 ~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~I~iWd~~~~~~~~~~ 288 (701)
....+.+++++..|.|.+||+.+...+.. .+.+..|+..|.++.|++. ..+|+|||.||+|++||+...+
T Consensus 97 ~~~~NlIAT~s~nG~i~vWdlnk~~rnk~----l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~----- 167 (839)
T KOG0269|consen 97 QLYSNLIATCSTNGVISVWDLNKSIRNKL----LTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKK----- 167 (839)
T ss_pred cchhhhheeecCCCcEEEEecCccccchh----hhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccc-----
Confidence 34567788899999999999987322111 1245669999999999985 5689999999999999998753
Q ss_pred cCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC--
Q 005352 289 DIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-- 366 (701)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-- 366 (701)
...++.+....|.+++|+|..
T Consensus 168 ---------------------------------------------------------S~~t~~~nSESiRDV~fsp~~~~ 190 (839)
T KOG0269|consen 168 ---------------------------------------------------------SKSTFRSNSESIRDVKFSPGYGN 190 (839)
T ss_pred ---------------------------------------------------------ccccccccchhhhceeeccCCCc
Confidence 234455677889999999965
Q ss_pred eEEEEECCCcEEEEECCCC-eeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcE--EEEecCCCcEEEE
Q 005352 367 YLLSASIDKTVRLWRVGND-HCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHV--VDWVDIRQIVTAV 442 (701)
Q Consensus 367 ~l~s~s~dg~I~iWd~~~~-~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~--~~~~~~~~~i~~i 442 (701)
+|+++...|.+++||++.. ++...+. |.++|.|+.|+| +..+||+|+.|+.|+|||+.+.+. +..+....++..+
T Consensus 191 ~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhP-nr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rV 269 (839)
T KOG0269|consen 191 KFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHP-NREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRV 269 (839)
T ss_pred eEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecC-CCceeeecCCCccEEEEeccCCCccceeEEeecceeeee
Confidence 9999999999999999875 4555554 999999999999 999999999999999999986653 3556667899999
Q ss_pred EEeeCCCe-EEEEe--cCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCC
Q 005352 443 CYRPDGQG-GIVGS--MMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP 517 (701)
Q Consensus 443 ~~sp~g~~-l~~gs--~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~ 517 (701)
.|-|..++ |++++ .|-.|++||++...... .....|...++.++|-..+...+++++.|+.|..-..+
T Consensus 270 kWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~-------~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~k 340 (839)
T KOG0269|consen 270 KWRPARSYHLATCSMVVDTSVHVWDVRRPYIPY-------ATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFK 340 (839)
T ss_pred eeccCccchhhhhhccccceEEEEeeccccccc-------eeeeccCccccceeccCCCceeeEeecCccHHHHhhhh
Confidence 99997765 44443 37789999998765432 12345667889999988778899999999998765444
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.2e-21 Score=188.16 Aligned_cols=243 Identities=16% Similarity=0.200 Sum_probs=191.3
Q ss_pred CccccccccccceEEEEEccCccchhhhccc--------------CceeccCCCcEEEEEEccC-CCEEEEEeCCCcEEE
Q 005352 212 NEEDAMFCSKVQRVKVYHCKKRSKELSALYK--------------GQEIQAHDGSILTMKFSPD-GQYLASAGDDGVVRL 276 (701)
Q Consensus 212 ~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~--------------~~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~I~i 276 (701)
.++++++|+.+..|.|||++-...-+..+.. ...-++|+..|.+|.|+.+ ...|||||.|.+|++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 3467888999999999998754433222221 1223579999999999876 457999999999999
Q ss_pred EEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccC
Q 005352 277 WQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGE 356 (701)
Q Consensus 277 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 356 (701)
||+.+++ +...+..|.+.
T Consensus 271 WD~~~g~--------------------------------------------------------------p~~s~~~~~k~ 288 (463)
T KOG0270|consen 271 WDVDTGK--------------------------------------------------------------PKSSITHHGKK 288 (463)
T ss_pred EEcCCCC--------------------------------------------------------------cceehhhcCCc
Confidence 9999985 44455678999
Q ss_pred eEEEEEecCC--eEEEEECCCcEEEEECCCC-eeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCC-cEE-E
Q 005352 357 ILDLSWSKNN--YLLSASIDKTVRLWRVGND-HCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSC-HVV-D 431 (701)
Q Consensus 357 I~~l~~s~~~--~l~s~s~dg~I~iWd~~~~-~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~-~~~-~ 431 (701)
|.++.|+|.. .|++|+.|++|.+.|.+.. ..-..++..+.|-.++|+|.....|+++..||+|+-+|+|.. +.+ .
T Consensus 289 Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt 368 (463)
T KOG0270|consen 289 VQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWT 368 (463)
T ss_pred eeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeE
Confidence 9999999987 9999999999999999843 333445678899999999988899999999999999999976 444 6
Q ss_pred EecCCCcEEEEEEeeCC-CeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCc
Q 005352 432 WVDIRQIVTAVCYRPDG-QGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQ 510 (701)
Q Consensus 432 ~~~~~~~i~~i~~sp~g-~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~ 510 (701)
...|.+.|.++++++.- .++++++.++.|++|++.......... +.....+..|++++|.....++.|+..+.
T Consensus 369 ~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~------~~~~~~rl~c~~~~~~~a~~la~GG~k~~ 442 (463)
T KOG0270|consen 369 LKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKE------HSFKLGRLHCFALDPDVAFTLAFGGEKAV 442 (463)
T ss_pred EEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccccc------ccccccceeecccCCCcceEEEecCccce
Confidence 67899999999999854 468889999999999998655432111 11122447888999988888999999999
Q ss_pred EEEEeCCcccee
Q 005352 511 VRILQGPNVIGK 522 (701)
Q Consensus 511 I~iwd~~~~~~~ 522 (701)
++|||+.+....
T Consensus 443 ~~vwd~~~~~~V 454 (463)
T KOG0270|consen 443 LRVWDIFTNSPV 454 (463)
T ss_pred EEEeecccChhH
Confidence 999998754433
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-19 Score=194.42 Aligned_cols=268 Identities=15% Similarity=0.208 Sum_probs=208.7
Q ss_pred eeeecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeee
Q 005352 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLT 286 (701)
Q Consensus 207 ~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~ 286 (701)
.++..+++.+++++.|+.|++|+......+.. .+.-|...|.+++- ++.+|++|+.+++|.+|.+.+++.-
T Consensus 19 i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~------ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~~~- 89 (933)
T KOG1274|consen 19 ICYDPDGEFICTCGSDGDIRKWKTNSDEEEPE------TIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGEED- 89 (933)
T ss_pred EEEcCCCCEEEEecCCCceEEeecCCcccCCc------hhhccCceeEEEee--cccceEEeeccceEEEeeCCCCCcc-
Confidence 35566677888999999999998654422221 22237778888876 4559999999999999999876411
Q ss_pred eecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC
Q 005352 287 EVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN 366 (701)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~ 366 (701)
..+.-.+-++.+++++-+|
T Consensus 90 -------------------------------------------------------------~iL~Rftlp~r~~~v~g~g 108 (933)
T KOG1274|consen 90 -------------------------------------------------------------TILARFTLPIRDLAVSGSG 108 (933)
T ss_pred -------------------------------------------------------------ceeeeeeccceEEEEecCC
Confidence 0112234578999999999
Q ss_pred -eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEec---------C
Q 005352 367 -YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVD---------I 435 (701)
Q Consensus 367 -~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~---------~ 435 (701)
+++.||.|-.|++-++........+. |..+|.++.|+| .+++||+.+.||.|+|||+.++.+..... .
T Consensus 109 ~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p-~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~ 187 (933)
T KOG1274|consen 109 KMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDP-KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFIL 187 (933)
T ss_pred cEEEeecCceeEEEEeccccchheeecccCCceeeeeEcC-CCCEEEEEecCceEEEEEcccchhhhhcccCCccccccc
Confidence 99999999999999998887777765 999999999999 99999999999999999999887653322 1
Q ss_pred CCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEe
Q 005352 436 RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQ 515 (701)
Q Consensus 436 ~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd 515 (701)
...+..++|+|+|..+++...|+.|++|+..+......... ..+...+..++|+| .|.+|++++.||.|.|||
T Consensus 188 s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~------~~~ss~~~~~~wsP-nG~YiAAs~~~g~I~vWn 260 (933)
T KOG1274|consen 188 SRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRD------KLSSSKFSDLQWSP-NGKYIAASTLDGQILVWN 260 (933)
T ss_pred cceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecc------cccccceEEEEEcC-CCcEEeeeccCCcEEEEe
Confidence 34578899999999999999999999999988776543221 22224499999999 699999999999999999
Q ss_pred CCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 005352 516 GPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMW 556 (701)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iW 556 (701)
..+... +.....|.+++|.|++.-|-.-...|...+|
T Consensus 261 v~t~~~----~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 261 VDTHER----HEFKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred cccchh----ccccceeEEEecCCCCCeeEEEeeccccccC
Confidence 987222 4456789999999998866555555555554
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.4e-19 Score=183.62 Aligned_cols=244 Identities=15% Similarity=0.130 Sum_probs=171.5
Q ss_pred eEEEEEecCC-eE-EEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEE-EEcCCcEEEEeCCCCcEEEEe
Q 005352 357 ILDLSWSKNN-YL-LSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFIS-GSIDGKVRIWAVLSCHVVDWV 433 (701)
Q Consensus 357 I~~l~~s~~~-~l-~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~s-gs~dg~v~iwd~~~~~~~~~~ 433 (701)
+.+++|+|++ .+ ++++.++.|++||+.+++.+..+.....+..++|+| +++.+++ +..++.|++||+.+.+.+...
T Consensus 33 ~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~-~g~~l~~~~~~~~~l~~~d~~~~~~~~~~ 111 (300)
T TIGR03866 33 PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFALHP-NGKILYIANEDDNLVTVIDIETRKVLAEI 111 (300)
T ss_pred CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEECC-CCCEEEEEcCCCCeEEEEECCCCeEEeEe
Confidence 5679999998 55 567789999999999998887776444567889999 7776654 456899999999998877666
Q ss_pred cCCCcEEEEEEeeCCCeEEEEecCC-cEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEE-ECCCcE
Q 005352 434 DIRQIVTAVCYRPDGQGGIVGSMMG-DCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVS-CADSQV 511 (701)
Q Consensus 434 ~~~~~i~~i~~sp~g~~l~~gs~dg-~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~-s~dg~I 511 (701)
.....+..++|+|+|+.++++..++ .+.+||..+....... . ....+..+.|+| ++..++++ ..++.|
T Consensus 112 ~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~--~-------~~~~~~~~~~s~-dg~~l~~~~~~~~~v 181 (300)
T TIGR03866 112 PVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNV--L-------VDQRPRFAEFTA-DGKELWVSSEIGGTV 181 (300)
T ss_pred eCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEE--E-------cCCCccEEEECC-CCCEEEEEcCCCCEE
Confidence 6556678999999999999988765 4677898776543211 0 112356789999 56666544 469999
Q ss_pred EEEeCCccceee--eccc-----CCCCeEEEEEecCCCEEEEE-eCCCcEEEEeCCCCCCCCccccccccccccccCCce
Q 005352 512 RILQGPNVIGKY--KGLR-----RSGNQLSACFTSDGKHIVSA-GEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNAS 583 (701)
Q Consensus 512 ~iwd~~~~~~~~--~~~~-----~~~~v~~l~~s~dg~~l~sg-s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (701)
++||..+..... .... .......++|+|++++++.+ +.++.|.+||+.+++... ..
T Consensus 182 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~--------~~-------- 245 (300)
T TIGR03866 182 SVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLD--------YL-------- 245 (300)
T ss_pred EEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEE--------EE--------
Confidence 999998653322 1110 11124568899999986554 556789999987665210 00
Q ss_pred EEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccc-cCCCCcccCCCCccCCCCcccccc
Q 005352 584 IAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVF-ESFPKGCATWPEEKLPALSQLSSA 652 (701)
Q Consensus 584 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~-~s~d~~~~~W~~~~~~~~~~~~~~ 652 (701)
.....+..+.|+|+ +..+++ .+.++.+++|+.+....+.++...
T Consensus 246 ---------------------~~~~~~~~~~~~~~----g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~ 290 (300)
T TIGR03866 246 ---------------------LVGQRVWQLAFTPD----EKYLLTTNGVSNDVSVIDVAALKVIKSIKVG 290 (300)
T ss_pred ---------------------EeCCCcceEEECCC----CCEEEEEcCCCCeEEEEECCCCcEEEEEEcc
Confidence 00123445678887 555555 456899999999998887776444
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-19 Score=171.75 Aligned_cols=259 Identities=19% Similarity=0.235 Sum_probs=189.0
Q ss_pred cccCcceee--ecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEcc--CCCEEEEEeCCCcEEE
Q 005352 201 DKQGEGERV--RLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSP--DGQYLASAGDDGVVRL 276 (701)
Q Consensus 201 ~~~~~~~~~--~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp--dg~~Lasgs~Dg~I~i 276 (701)
+|+.-++++ .+.+.++++|+.|++|+||+.++... ........++|.+.|+.+.|.+ -|+.+|+++.|+++.|
T Consensus 11 ~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~---~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~i 87 (361)
T KOG2445|consen 11 GHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSG---TWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSI 87 (361)
T ss_pred CCcceeeeeeecccCceeeeccCCCcEEEEeccCCCC---ceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceee
Confidence 344445555 45678999999999999999754333 3334456789999999999965 4999999999999999
Q ss_pred EEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccC
Q 005352 277 WQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGE 356 (701)
Q Consensus 277 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 356 (701)
|.-.... ...+.. . -....++......
T Consensus 88 WEE~~~~----~~~~~~---------------------------------------------~----Wv~~ttl~Dsrss 114 (361)
T KOG2445|consen 88 WEEQEKS----EEAHGR---------------------------------------------R----WVRRTTLVDSRSS 114 (361)
T ss_pred eeecccc----cccccc---------------------------------------------e----eEEEEEeecCCcc
Confidence 9853211 000000 0 0234556667889
Q ss_pred eEEEEEecCC---eEEEEECCCcEEEEECCCCe------eeeeec--------CCCCeEEEEEeeC--CCCEEEEEEcC-
Q 005352 357 ILDLSWSKNN---YLLSASIDKTVRLWRVGNDH------CLRVFP--------HSNYVTCVHFNPV--DDNYFISGSID- 416 (701)
Q Consensus 357 I~~l~~s~~~---~l~s~s~dg~I~iWd~~~~~------~~~~~~--------h~~~V~~l~f~p~--~~~~l~sgs~d- 416 (701)
|++++|.|.. .|++++.||+||||+.-.-- ....++ +..+..|+.|+|. ...+|+.|+.+
T Consensus 115 V~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~ 194 (361)
T KOG2445|consen 115 VTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDED 194 (361)
T ss_pred eeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccC
Confidence 9999999975 89999999999999865432 222222 5677889999982 24678888755
Q ss_pred ----CcEEEEeCCCCc-----EEEEecCCCcEEEEEEeeC----CCeEEEEecCCcEEEEECCCCe------------ee
Q 005352 417 ----GKVRIWAVLSCH-----VVDWVDIRQIVTAVCYRPD----GQGGIVGSMMGDCRFYNVSDNH------------LE 471 (701)
Q Consensus 417 ----g~v~iwd~~~~~-----~~~~~~~~~~i~~i~~sp~----g~~l~~gs~dg~v~i~d~~~~~------------~~ 471 (701)
+.++||...... +-.+.++..+|+.|+|.|+ -..|++++.|| |+||.+.... ..
T Consensus 195 a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~ 273 (361)
T KOG2445|consen 195 APHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLM 273 (361)
T ss_pred CccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCc
Confidence 478898765432 2245688999999999995 35799999999 9999997421 22
Q ss_pred eeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCC
Q 005352 472 LDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP 517 (701)
Q Consensus 472 ~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~ 517 (701)
...++........|...+..+.|+- .+..|.+.+.||.||+|...
T Consensus 274 ~~l~v~~vs~~~~H~~~VWrv~wNm-tGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 274 TDLPVEKVSELDDHNGEVWRVRWNM-TGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred cccceEEeeeccCCCCceEEEEEee-eeeEEeecCCCceeeehhhh
Confidence 2333444445667888999999998 78999999999999999753
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.8e-21 Score=203.35 Aligned_cols=235 Identities=22% Similarity=0.397 Sum_probs=202.2
Q ss_pred eeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEe
Q 005352 245 EIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSL 324 (701)
Q Consensus 245 ~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (701)
++.+|...|.++..-..++.+++||.|..+-+|.+....
T Consensus 23 ~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~----------------------------------------- 61 (825)
T KOG0267|consen 23 EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPN----------------------------------------- 61 (825)
T ss_pred hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCc-----------------------------------------
Confidence 455699999999987788999999999999999986542
Q ss_pred eecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEE
Q 005352 325 RRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHF 402 (701)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f 402 (701)
.+..|.+|..+|.+|.|++.. +|++|+.+|+|++||++..+.++++. |...+..++|
T Consensus 62 ---------------------~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f 120 (825)
T KOG0267|consen 62 ---------------------AITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDF 120 (825)
T ss_pred ---------------------hhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeee
Confidence 233478999999999999988 99999999999999999999888775 9999999999
Q ss_pred eeCCCCEEEEEEcCCcEEEEeCCCCcEE-EEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecc
Q 005352 403 NPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSK 481 (701)
Q Consensus 403 ~p~~~~~l~sgs~dg~v~iwd~~~~~~~-~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~ 481 (701)
+| -+.++++|+.|+.+++||++..-+. ....|...+..+.|+|+|++++.|+.|..+++||+..+++..+
T Consensus 121 ~P-~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~e-------- 191 (825)
T KOG0267|consen 121 HP-YGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKE-------- 191 (825)
T ss_pred cc-ceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccc--------
Confidence 99 8899999999999999999965555 4445778899999999999999999999999999988876432
Q ss_pred cCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCC
Q 005352 482 KKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDS 551 (701)
Q Consensus 482 ~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg 551 (701)
...|...+..+.|+| ..-+++.|+.|.+|++||+++....-.+......|.+.+|+|++..+++|....
T Consensus 192 f~~~e~~v~sle~hp-~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 192 FKSHEGKVQSLEFHP-LEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred cccccccccccccCc-hhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchhh
Confidence 345667888899999 678889999999999999998776666666678999999999999998886554
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=5e-20 Score=179.15 Aligned_cols=237 Identities=18% Similarity=0.244 Sum_probs=176.2
Q ss_pred cccccccceEEEEEccCccch---------hhhcccCceeccCCCcEEEEEEccCC-CEEEEEeCCCcEEEEEeecCeee
Q 005352 216 AMFCSKVQRVKVYHCKKRSKE---------LSALYKGQEIQAHDGSILTMKFSPDG-QYLASAGDDGVVRLWQVVEDERL 285 (701)
Q Consensus 216 ~~~~~~d~~v~vw~~~~~~~~---------~~~~~~~~~l~~H~~~I~~l~fspdg-~~Lasgs~Dg~I~iWd~~~~~~~ 285 (701)
.++-+..|.|+||++...-.. .........+.+|.+.=++|+|||-. ..|+||..-+.|++|...++.-.
T Consensus 168 ~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~ 247 (440)
T KOG0302|consen 168 CASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWK 247 (440)
T ss_pred eeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeeccCcee
Confidence 344677899999997532211 12223334678999999999999932 25889888889999998876421
Q ss_pred eeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecC
Q 005352 286 TEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN 365 (701)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~ 365 (701)
. -...|.+|+..|-+|+|||.
T Consensus 248 v-----------------------------------------------------------d~~Pf~gH~~SVEDLqWSpt 268 (440)
T KOG0302|consen 248 V-----------------------------------------------------------DQRPFTGHTKSVEDLQWSPT 268 (440)
T ss_pred e-----------------------------------------------------------cCccccccccchhhhccCCc
Confidence 0 11234679999999999997
Q ss_pred C--eEEEEECCCcEEEEECCCC---eeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCc---EE-EEecCC
Q 005352 366 N--YLLSASIDKTVRLWRVGND---HCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH---VV-DWVDIR 436 (701)
Q Consensus 366 ~--~l~s~s~dg~I~iWd~~~~---~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~---~~-~~~~~~ 436 (701)
. .|++||.||+|+|||++.+ .++.+-.|.+.|+.|.|+. ...+|++|+.||+++|||++.-+ .+ .+..|.
T Consensus 269 E~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr-~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk 347 (440)
T KOG0302|consen 269 EDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNR-REPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHK 347 (440)
T ss_pred cCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccC-CcceeeecCCCceEEEEEhhhccCCCcceeEEecc
Confidence 5 9999999999999999998 5666656999999999998 77799999999999999998643 33 667799
Q ss_pred CcEEEEEEeeC-CCeEEEEecCCcEEEEECCCCee-----------eeeeeEEeecccCCCCCCeeEEEEecCCCCEEEE
Q 005352 437 QIVTAVCYRPD-GQGGIVGSMMGDCRFYNVSDNHL-----------ELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMV 504 (701)
Q Consensus 437 ~~i~~i~~sp~-g~~l~~gs~dg~v~i~d~~~~~~-----------~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~ 504 (701)
.+|++|.|+|. ...|++++.|..|.+||+....- ....+..+.- .......+..+.|+++.+.++++
T Consensus 348 ~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLF-VHqGQke~KevhWH~QiPG~lvs 426 (440)
T KOG0302|consen 348 APITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLF-VHQGQKEVKEVHWHRQIPGLLVS 426 (440)
T ss_pred CCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEE-EecchhHhhhheeccCCCCeEEE
Confidence 99999999994 56788889999999999964321 0000000100 01123457788999988899999
Q ss_pred EECCCcEEE
Q 005352 505 SCADSQVRI 513 (701)
Q Consensus 505 ~s~dg~I~i 513 (701)
.+.||.-.+
T Consensus 427 Ta~dGfnVf 435 (440)
T KOG0302|consen 427 TAIDGFNVF 435 (440)
T ss_pred ecccceeEE
Confidence 988875433
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=5e-20 Score=184.11 Aligned_cols=246 Identities=18% Similarity=0.246 Sum_probs=187.3
Q ss_pred cCcceeee--cCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEee
Q 005352 203 QGEGERVR--LNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVV 280 (701)
Q Consensus 203 ~~~~~~~~--~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~ 280 (701)
++.+.++. +.+.+++.|+..+.+.+|.+.... ....+.+|=..|+|+.|+-||.+|+|||.||.|.+|.+.
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~-------LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~ 153 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGI-------LLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLT 153 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEecccc-------HHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEE
Confidence 44455544 344455556699999999765442 223467799999999999999999999999999999985
Q ss_pred cCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEE
Q 005352 281 EDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDL 360 (701)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l 360 (701)
..-. .+. +..-+|++.|..|+-+|+++
T Consensus 154 ~lv~-----------------a~~------------------------------------~~~~~p~~~f~~HtlsITDl 180 (476)
T KOG0646|consen 154 DLVS-----------------ADN------------------------------------DHSVKPLHIFSDHTLSITDL 180 (476)
T ss_pred eecc-----------------ccc------------------------------------CCCccceeeeccCcceeEEE
Confidence 4210 000 00127899999999999999
Q ss_pred EEecCC---eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCc---------
Q 005352 361 SWSKNN---YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH--------- 428 (701)
Q Consensus 361 ~~s~~~---~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~--------- 428 (701)
...+.+ +|+|+|.|.++++||+..+..+..+..+..+.+++..| .+..++.|+.+|.|.+.++..-.
T Consensus 181 ~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDp-ae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k 259 (476)
T KOG0646|consen 181 QIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDP-AERVVYIGTEEGKIFQNLLFKLSGQSAGVNQK 259 (476)
T ss_pred EecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcc-cccEEEecCCcceEEeeehhcCCccccccccc
Confidence 988765 99999999999999999999999999999999999999 89999999999999988774321
Q ss_pred --------EEEEecCCC--cEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCC
Q 005352 429 --------VVDWVDIRQ--IVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQD 498 (701)
Q Consensus 429 --------~~~~~~~~~--~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~ 498 (701)
.....+|.. .|+|++++-||..|++|+.||.|++||+...++.... ....++|+.+++.|-.
T Consensus 260 ~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl--------~~~kgpVtnL~i~~~~ 331 (476)
T KOG0646|consen 260 GRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTL--------QTSKGPVTNLQINPLE 331 (476)
T ss_pred ccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHH--------hhhccccceeEeeccc
Confidence 223456666 8999999999999999999999999999877654221 1144778889887743
Q ss_pred CCEEEEEECCCcEEEEeCC
Q 005352 499 SSKVMVSCADSQVRILQGP 517 (701)
Q Consensus 499 ~~~l~~~s~dg~I~iwd~~ 517 (701)
...++.-.....+..|+.+
T Consensus 332 ~~~~l~~~~~ps~~~~~lk 350 (476)
T KOG0646|consen 332 RGIILFEHKQPSLPNPHLK 350 (476)
T ss_pred cceecccccCccCCchHhh
Confidence 3344333334444444443
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2e-19 Score=170.98 Aligned_cols=286 Identities=16% Similarity=0.192 Sum_probs=203.6
Q ss_pred CcceeeecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCe
Q 005352 204 GEGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDE 283 (701)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~ 283 (701)
.+...++..+.++++|..+|.|.|||+.... ..+.+.+|..+|++++||+||+.|+|++.|..|.+||+..+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~-------iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs 98 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR-------IARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGS 98 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccc-------hhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCC
Confidence 4456778888999999999999999876443 345678899999999999999999999999999999999887
Q ss_pred eeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEe
Q 005352 284 RLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS 363 (701)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s 363 (701)
.++++. ...+|+.+.|+
T Consensus 99 ~l~rir---------------------------------------------------------------f~spv~~~q~h 115 (405)
T KOG1273|consen 99 PLKRIR---------------------------------------------------------------FDSPVWGAQWH 115 (405)
T ss_pred ceeEEE---------------------------------------------------------------ccCccceeeec
Confidence 555443 23567777888
Q ss_pred cCC--eEEEEECCCcEEEEECCCCeeeeeec-----CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCC
Q 005352 364 KNN--YLLSASIDKTVRLWRVGNDHCLRVFP-----HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIR 436 (701)
Q Consensus 364 ~~~--~l~s~s~dg~I~iWd~~~~~~~~~~~-----h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~ 436 (701)
|.. .+++.-.+..-.+-++...+....-. .+....+..|.+ .++++++|...|.+.++|..+.+++......
T Consensus 116 p~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr-~g~yIitGtsKGkllv~~a~t~e~vas~rit 194 (405)
T KOG1273|consen 116 PRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDR-RGKYIITGTSKGKLLVYDAETLECVASFRIT 194 (405)
T ss_pred cccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccC-CCCEEEEecCcceEEEEecchheeeeeeeec
Confidence 755 44444455545555554422111111 112233346787 8999999999999999999999888655433
Q ss_pred --CcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeee-eeeeEEeecc--cCCCCCCeeEEEEecCCCCEEEEEEC-CCc
Q 005352 437 --QIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLE-LDAEICVHSK--KKAPCKRITGFQFLPQDSSKVMVSCA-DSQ 510 (701)
Q Consensus 437 --~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~-~~~~~~~~~~--~~~~~~~i~~l~~~p~~~~~l~~~s~-dg~ 510 (701)
..|..+.++-.|+.|++.+.|..|+.|+++.-... .........+ ..-....-.+++|+. ++.++++++. ...
T Consensus 195 s~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~-dgeYv~a~s~~aHa 273 (405)
T KOG1273|consen 195 SVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSG-DGEYVCAGSARAHA 273 (405)
T ss_pred hheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecC-CccEEEecccccee
Confidence 57899999999999999999999999998732110 0000000000 001123456788888 6777777664 678
Q ss_pred EEEEeCCccceeeecccCC-CCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 511 VRILQGPNVIGKYKGLRRS-GNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 511 I~iwd~~~~~~~~~~~~~~-~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
++||........-..++.. .....+.|+|-...|++- ..|.|+||.....+
T Consensus 274 LYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~~e 325 (405)
T KOG1273|consen 274 LYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQVE 325 (405)
T ss_pred EEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEeeccc
Confidence 9999976544443343344 567889999998888887 68999999987665
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.5e-19 Score=182.54 Aligned_cols=289 Identities=18% Similarity=0.197 Sum_probs=204.0
Q ss_pred eEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCC
Q 005352 347 LHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVL 425 (701)
Q Consensus 347 ~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~ 425 (701)
-..+.||++.|.+|...|.| .|++|+.||+|+||.+.++.|++++...+.|.||+|+|.....++++..+..+.|-+..
T Consensus 393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~ 472 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPI 472 (733)
T ss_pred eeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCcc
Confidence 45678999999999999999 99999999999999999999999999999999999999444444444444445444321
Q ss_pred CC--------------------------------------cEEEEecCCCcEEEEEEeeCCCeEEEEecC---CcEEEEE
Q 005352 426 SC--------------------------------------HVVDWVDIRQIVTAVCYRPDGQGGIVGSMM---GDCRFYN 464 (701)
Q Consensus 426 ~~--------------------------------------~~~~~~~~~~~i~~i~~sp~g~~l~~gs~d---g~v~i~d 464 (701)
-| .+...+.|...|..+.|+..|.+|++...+ ..|.|++
T Consensus 473 ~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQ 552 (733)
T KOG0650|consen 473 FGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQ 552 (733)
T ss_pred ccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEe
Confidence 10 122345677889999999999999997653 4588888
Q ss_pred CCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEE
Q 005352 465 VSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHI 544 (701)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l 544 (701)
+.....+. ......+.+.++.|+|. ..+|++++ ...|+|||+......-+.......|..++++|.|..|
T Consensus 553 LSK~~sQ~--------PF~kskG~vq~v~FHPs-~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnl 622 (733)
T KOG0650|consen 553 LSKRKSQS--------PFRKSKGLVQRVKFHPS-KPYLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNL 622 (733)
T ss_pred cccccccC--------chhhcCCceeEEEecCC-CceEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeE
Confidence 87654321 12223466899999994 44554444 4689999998766555666677889999999999999
Q ss_pred EEEeCCCcEEEEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCc
Q 005352 545 VSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQ 624 (701)
Q Consensus 545 ~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~ 624 (701)
+.|+.|+.+..+|++-...+.. ....+...++.++|.+. -.
T Consensus 623 i~gs~d~k~~WfDldlsskPyk-----------------------------------~lr~H~~avr~Va~H~r----yP 663 (733)
T KOG0650|consen 623 ILGSYDKKMCWFDLDLSSKPYK-----------------------------------TLRLHEKAVRSVAFHKR----YP 663 (733)
T ss_pred EEecCCCeeEEEEcccCcchhH-----------------------------------Hhhhhhhhhhhhhhccc----cc
Confidence 9999999999999876643210 11112334555666664 34
Q ss_pred cccccCCCCcccCCCCc------cCC---CCccccccccchhhhhhhhhcccccccccCCCccEEEEecCCCeEeEE
Q 005352 625 EYVFESFPKGCATWPEE------KLP---ALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSF 692 (701)
Q Consensus 625 ~~~~~s~d~~~~~W~~~------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivTgg~DG~Irvw 692 (701)
.|.+++.|+++.++-.. +.+ +++.+.+|...+ ...|..+.+.+. -..|+|||.||+||+|
T Consensus 664 Lfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~-------~~gVLd~~wHP~-qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 664 LFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTN-------DLGVLDTIWHPR-QPWLFSAGADGTIRLF 732 (733)
T ss_pred eeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeec-------ccceEeecccCC-CceEEecCCCceEEee
Confidence 56677777887543321 111 245565662211 112444446666 7889999999999998
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.9e-19 Score=179.42 Aligned_cols=299 Identities=17% Similarity=0.253 Sum_probs=213.2
Q ss_pred CeEEEcCCccCeEEEEEecCC---eEEEEECCCcEEEEECCCCe----eeeee-cCCCCeEEEEEeeCCCCEEEEEEcCC
Q 005352 346 PLHEFHGHSGEILDLSWSKNN---YLLSASIDKTVRLWRVGNDH----CLRVF-PHSNYVTCVHFNPVDDNYFISGSIDG 417 (701)
Q Consensus 346 ~~~~~~~h~~~I~~l~~s~~~---~l~s~s~dg~I~iWd~~~~~----~~~~~-~h~~~V~~l~f~p~~~~~l~sgs~dg 417 (701)
+..+.+-|...|++++|+|.. .+++|..-|.|-+||+.+.+ -+..+ .|..+|.+|.|+|.+...+++.+.||
T Consensus 178 ~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDG 257 (498)
T KOG4328|consen 178 ILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDG 257 (498)
T ss_pred ecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCc
Confidence 445667789999999999975 88899999999999996332 22233 39999999999999999999999999
Q ss_pred cEEEEeCCCCcEEEEe---cCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEE
Q 005352 418 KVRIWAVLSCHVVDWV---DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQF 494 (701)
Q Consensus 418 ~v~iwd~~~~~~~~~~---~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 494 (701)
+|++-|+.+...-.+. .....+..+.|+.+...++.+..=|...+||++++.-... ....|...|+++++
T Consensus 258 tiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~-------~~~lh~kKI~sv~~ 330 (498)
T KOG4328|consen 258 TIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYE-------NLRLHKKKITSVAL 330 (498)
T ss_pred eeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccch-------hhhhhhcccceeec
Confidence 9999999876533222 3345677888888888888888888999999998764322 12334568999999
Q ss_pred ecCCCCEEEEEECCCcEEEEeCCcccee----eecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC---CCCCCCcc
Q 005352 495 LPQDSSKVMVSCADSQVRILQGPNVIGK----YKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCI---GHEEPAHD 567 (701)
Q Consensus 495 ~p~~~~~l~~~s~dg~I~iwd~~~~~~~----~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~---~~~~~~~~ 567 (701)
+|..+.+|++++.|++.+|||++....+ +....|...|.++.|||.+..|+|.+.|..|+|||.. ..-++.
T Consensus 331 NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~-- 408 (498)
T KOG4328|consen 331 NPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPL-- 408 (498)
T ss_pred CCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCcc--
Confidence 9999999999999999999999854433 3445699999999999998889999999999999974 111111
Q ss_pred ccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCCcccCCCCccCCCCc
Q 005352 568 QAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEKLPALS 647 (701)
Q Consensus 568 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~~~~~~~ 647 (701)
..+.+- +.. ...-.+....|.|+ -..++.+...+.|-+++.+....+.
T Consensus 409 -----~~I~Hn----------~~t-------------~RwlT~fKA~W~P~----~~li~vg~~~r~IDv~~~~~~q~v~ 456 (498)
T KOG4328|consen 409 -----GTIPHN----------NRT-------------GRWLTPFKAAWDPD----YNLIVVGRYPRPIDVFDGNGGQMVC 456 (498)
T ss_pred -----ceeecc----------Ccc-------------cccccchhheeCCC----ccEEEEeccCcceeEEcCCCCEEee
Confidence 000000 000 01112334467775 4566677777778888888777555
Q ss_pred cccccccchhhhhhhhhcccccccccCCCcc-EEEEecCCCeEeEEeec
Q 005352 648 QLSSASALHKSQYKFLKSSCLCTTSSHAWGL-VIVTAGWDGRIRSFLNY 695 (701)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~ivTgg~DG~Irvw~~~ 695 (701)
.+.... ...|.++-.-|..+. +++-++..|.|.||-+-
T Consensus 457 el~~P~----------~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 457 ELHDPE----------SSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred eccCcc----------ccccccceeecccccceeccCCccceEEEEecC
Confidence 542220 112333322233366 44445677999999764
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.7e-19 Score=177.27 Aligned_cols=302 Identities=20% Similarity=0.283 Sum_probs=206.7
Q ss_pred eeecCcc-ccccccccceEEEEEccCccchh--hhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCee
Q 005352 208 RVRLNEE-DAMFCSKVQRVKVYHCKKRSKEL--SALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDER 284 (701)
Q Consensus 208 ~~~~~~~-~~~~~~~d~~v~vw~~~~~~~~~--~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~ 284 (701)
.++.+.. .+++|+.|..|+||.+......- ..+.-...|..|...|+++.|+|+|.+||||+.+|.|.+|....-.
T Consensus 20 dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~- 98 (434)
T KOG1009|consen 20 DFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVR- 98 (434)
T ss_pred EeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcC-
Confidence 3444444 77889999999999986544332 1233334678899999999999999999999999999999876411
Q ss_pred eeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEec
Q 005352 285 LTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK 364 (701)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~ 364 (701)
+. .... + . .... .. -.....+.+|...|..++|+|
T Consensus 99 ~~-----~~d~-e-------------~---~~~k-------------------e~----w~v~k~lr~h~~diydL~Ws~ 133 (434)
T KOG1009|consen 99 IF-----DADT-E-------------A---DLNK-------------------EK----WVVKKVLRGHRDDIYDLAWSP 133 (434)
T ss_pred Cc-----cccc-h-------------h---hhCc-------------------cc----eEEEEEecccccchhhhhccC
Confidence 00 0000 0 0 0000 00 023456778999999999999
Q ss_pred CC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEec--------
Q 005352 365 NN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVD-------- 434 (701)
Q Consensus 365 ~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~-------- 434 (701)
++ ++++++.|..+++||+..++.+..+. |..+|+.++|.| .++++++-+.|...+++.+...+.+....
T Consensus 134 d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDp-l~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~ 212 (434)
T KOG1009|consen 134 DSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDP-LNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKA 212 (434)
T ss_pred CCceeeeeeccceEEEEEeccceeEeeccccccccceeecch-hhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecc
Confidence 99 99999999999999999999998887 999999999999 89999999999888888776544332111
Q ss_pred ------------CC----CcEEEEEEeeCCCeEEEEec----CCcE-----EEEECCCCeeeeeeeEEeecccCCCCCCe
Q 005352 435 ------------IR----QIVTAVCYRPDGQGGIVGSM----MGDC-----RFYNVSDNHLELDAEICVHSKKKAPCKRI 489 (701)
Q Consensus 435 ------------~~----~~i~~i~~sp~g~~l~~gs~----dg~v-----~i~d~~~~~~~~~~~~~~~~~~~~~~~~i 489 (701)
|. .-...++|+|+|..+++... .+.+ ++|+-...+.. ... ........
T Consensus 213 ~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP---~~~----lp~~~k~~ 285 (434)
T KOG1009|consen 213 FNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRP---AAR----LPSPKKPA 285 (434)
T ss_pred cCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCc---eee----cCCCCcce
Confidence 11 11456789999999988643 2222 33332211110 001 11112223
Q ss_pred eEEEEec-------CC---------CCEEEEEECCCcEEEEeCCccceeeec-ccCCCCeEEEEEecCCCEEEEEeCCCc
Q 005352 490 TGFQFLP-------QD---------SSKVMVSCADSQVRILQGPNVIGKYKG-LRRSGNQLSACFTSDGKHIVSAGEDSN 552 (701)
Q Consensus 490 ~~l~~~p-------~~---------~~~l~~~s~dg~I~iwd~~~~~~~~~~-~~~~~~v~~l~~s~dg~~l~sgs~Dg~ 552 (701)
..+.++| -+ ..++++....+.|+|||.......+.. .-|-..++.++|++||.+|+..|.||.
T Consensus 286 lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGy 365 (434)
T KOG1009|consen 286 LAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGF 365 (434)
T ss_pred EEEEeeeeEEEeccccccccccccccceEEEEeecceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCc
Confidence 3333332 00 234445555678999999875554433 237889999999999999999999999
Q ss_pred EEEEeCCCCCC
Q 005352 553 VYMWNCIGHEE 563 (701)
Q Consensus 553 I~iWd~~~~~~ 563 (701)
..+-.++..+.
T Consensus 366 CS~vtfe~~el 376 (434)
T KOG1009|consen 366 CSLVTFEPWEL 376 (434)
T ss_pred eEEEEEcchhc
Confidence 99988887764
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.6e-19 Score=180.95 Aligned_cols=276 Identities=17% Similarity=0.228 Sum_probs=203.2
Q ss_pred cccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCC-EEEEEeCCCcEEEEEeecCeeeeeecCCCCC
Q 005352 216 AMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQ-YLASAGDDGVVRLWQVVEDERLTEVDIPEID 294 (701)
Q Consensus 216 ~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~-~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~ 294 (701)
+.+++....+++||+....... .+..+. ..-.|.+++|+.... .+|+.+.|..|++|.-... +.++
T Consensus 5 l~~aS~gd~~kl~D~s~~~~~~--~~~~~t---~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~--~~~V------ 71 (673)
T KOG4378|consen 5 LHVASTGDKTKLSDFSDLETKS--EYVHQT---AEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGK--TPEV------ 71 (673)
T ss_pred eeeeccCCceEEeecccccCcc--ccccCC---CCCcceeeeccccceEEEeecCCceeEEEecccCC--CCcc------
Confidence 5567778899999986433221 111110 122489999987663 2445566889999974321 1111
Q ss_pred CceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEEC
Q 005352 295 PSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASI 373 (701)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~ 373 (701)
..+....|. .-.|++..... |+++|+.
T Consensus 72 --------------------------------------------------p~~~k~~gd--~~~Cv~~~s~S~y~~sgG~ 99 (673)
T KOG4378|consen 72 --------------------------------------------------PRVRKLTGD--NAFCVACASQSLYEISGGQ 99 (673)
T ss_pred --------------------------------------------------ceeeccccc--hHHHHhhhhcceeeeccCc
Confidence 011111222 23344444445 9999999
Q ss_pred CCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCC--CcEEEEEEeeCCCe
Q 005352 374 DKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIR--QIVTAVCYRPDGQG 450 (701)
Q Consensus 374 dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~--~~i~~i~~sp~g~~ 450 (701)
.++|+|||++...+.+.++ |...|+++.++- .+.+|++++..|.|.|..+.+++....+.+. ..|.-+.|+|..+.
T Consensus 100 ~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~-~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~ 178 (673)
T KOG4378|consen 100 SGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNN-TDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRF 178 (673)
T ss_pred CceeeehhhHHHHHhhhccCCcceeEEEEecC-CcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccce
Confidence 9999999999777777666 999999999998 8899999999999999999998877655554 45668999997664
Q ss_pred -EEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCC
Q 005352 451 -GIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRS 529 (701)
Q Consensus 451 -l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~ 529 (701)
|.+++.+|.|.+||+...... ......|..+..+++|+|.+..+|++.+.|..|.+||.......- .....
T Consensus 179 lL~~asd~G~VtlwDv~g~sp~-------~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~-~l~y~ 250 (673)
T KOG4378|consen 179 LLSIASDKGAVTLWDVQGMSPI-------FHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTD-RLTYS 250 (673)
T ss_pred eeEeeccCCeEEEEeccCCCcc-------cchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccc-eeeec
Confidence 556889999999999876543 223456778889999999999999999999999999998433222 22356
Q ss_pred CCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCCCC
Q 005352 530 GNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPA 565 (701)
Q Consensus 530 ~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~~ 565 (701)
.+...++|.++|.+|+.|+..|.|+.||++..+.|.
T Consensus 251 ~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv 286 (673)
T KOG4378|consen 251 HPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPV 286 (673)
T ss_pred CCcceeeecCCceEEEeecCCceEEEEecccCCCCc
Confidence 788999999999999999999999999999887654
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.6e-21 Score=199.11 Aligned_cols=219 Identities=19% Similarity=0.375 Sum_probs=189.4
Q ss_pred cCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecC
Q 005352 211 LNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDI 290 (701)
Q Consensus 211 ~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~ 290 (701)
-....++.|+.+..+.+|.+.+..... .|.+|..+|.+|.|+++..+|++|+.+|+|++||+++.
T Consensus 38 ~s~r~~~~Gg~~~k~~L~~i~kp~~i~-------S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeA-------- 102 (825)
T KOG0267|consen 38 KSSRSLVTGGEDEKVNLWAIGKPNAIT-------SLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEA-------- 102 (825)
T ss_pred ccceeeccCCCceeeccccccCCchhh-------eeeccCCcceeeecCcchhhhcccccCCceeeeehhhh--------
Confidence 344567778999999999877655443 37889999999999999999999999999999999876
Q ss_pred CCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEE
Q 005352 291 PEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLL 369 (701)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~ 369 (701)
+.++++.||...+..+.|+|-+ +++
T Consensus 103 ------------------------------------------------------k~vrtLtgh~~~~~sv~f~P~~~~~a 128 (825)
T KOG0267|consen 103 ------------------------------------------------------KIVRTLTGHLLNITSVDFHPYGEFFA 128 (825)
T ss_pred ------------------------------------------------------hhhhhhhccccCcceeeeccceEEec
Confidence 4456788999999999999999 899
Q ss_pred EEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEe-cCCCcEEEEEEeeC
Q 005352 370 SASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV-DIRQIVTAVCYRPD 447 (701)
Q Consensus 370 s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~-~~~~~i~~i~~sp~ 447 (701)
+|+.|+.+++||++...|...++ |...|.++.|+| ++.++++|+.|.+++|||+..+++...+ .|.+.+.++.|+|.
T Consensus 129 ~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP-~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~ 207 (825)
T KOG0267|consen 129 SGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSP-DGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPL 207 (825)
T ss_pred cccccccceehhhhccCceeeecCCcceeEEEeecC-CCceeeccCCcceeeeecccccccccccccccccccccccCch
Confidence 99999999999999999999998 889999999999 9999999999999999999999988555 48999999999999
Q ss_pred CCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECC
Q 005352 448 GQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD 508 (701)
Q Consensus 448 g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~d 508 (701)
.-.++.|+.|+++++||+++-..+ .........|.+..|+| ++..+++|...
T Consensus 208 e~Lla~Gs~d~tv~f~dletfe~I--------~s~~~~~~~v~~~~fn~-~~~~~~~G~q~ 259 (825)
T KOG0267|consen 208 EVLLAPGSSDRTVRFWDLETFEVI--------SSGKPETDGVRSLAFNP-DGKIVLSGEQI 259 (825)
T ss_pred hhhhccCCCCceeeeeccceeEEe--------eccCCccCCceeeeecC-CceeeecCchh
Confidence 999999999999999999875433 22333467899999999 67777776554
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.7e-19 Score=176.67 Aligned_cols=275 Identities=15% Similarity=0.215 Sum_probs=199.9
Q ss_pred ccCeEEEEEecCC-eEEEEECCCcEEEEECCCC--eeeeeec-CCCCeEEEEEeeCCCC-EEEEEEcCCcEEEEeCCCCc
Q 005352 354 SGEILDLSWSKNN-YLLSASIDKTVRLWRVGND--HCLRVFP-HSNYVTCVHFNPVDDN-YFISGSIDGKVRIWAVLSCH 428 (701)
Q Consensus 354 ~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~--~~~~~~~-h~~~V~~l~f~p~~~~-~l~sgs~dg~v~iwd~~~~~ 428 (701)
.+.|+++.|+|.. .|++++.|++++||.+... ..++.+. ...+|.+.+|.| ++. .+++++....++.||+.+.+
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p-~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAP-NGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecC-CCceEEEecccceEEEEeeccccc
Confidence 4689999999998 9999999999999988644 3344443 578999999999 777 89999999999999999987
Q ss_pred EEEEec---C-CCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEE
Q 005352 429 VVDWVD---I-RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMV 504 (701)
Q Consensus 429 ~~~~~~---~-~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~ 504 (701)
+..+.. + ...+....++|++++|+..+..|.|.+....++.+.....+ .+.|..++|+. ++..|++
T Consensus 292 ~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Ki---------eG~v~~~~fsS-dsk~l~~ 361 (514)
T KOG2055|consen 292 VTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKI---------EGVVSDFTFSS-DSKELLA 361 (514)
T ss_pred cccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeee---------ccEEeeEEEec-CCcEEEE
Confidence 764432 2 23577888999999999999999999999988876544332 26689999998 7899999
Q ss_pred EECCCcEEEEeCCccceeeecccCCCC--eEEEEEecCCCEEEEEeCCCcEEEEeCCCCCCCCccccccccccccccCCc
Q 005352 505 SCADSQVRILQGPNVIGKYKGLRRSGN--QLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNA 582 (701)
Q Consensus 505 ~s~dg~I~iwd~~~~~~~~~~~~~~~~--v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~ 582 (701)
++.+|.|.+||++......... ..+. -+++|.+++|.|||+|+..|.|.|||.++--. ...++++..+..+.
T Consensus 362 ~~~~GeV~v~nl~~~~~~~rf~-D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~--s~~PkPik~~dNLt--- 435 (514)
T KOG2055|consen 362 SGGTGEVYVWNLRQNSCLHRFV-DDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFA--STNPKPIKTVDNLT--- 435 (514)
T ss_pred EcCCceEEEEecCCcceEEEEe-ecCccceeeeeecCCCceEEeccCcceEEEeccchhhc--cCCCCchhhhhhhh---
Confidence 9999999999999765554443 2233 36788889999999999999999999765431 11222222221111
Q ss_pred eEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccC-------------CCCcccCCCCccCCCCccc
Q 005352 583 SIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFES-------------FPKGCATWPEEKLPALSQL 649 (701)
Q Consensus 583 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s-------------~d~~~~~W~~~~~~~~~~~ 649 (701)
..+..+.|+|+ ++.++.+| .....+-||....+.
T Consensus 436 -------------------------t~Itsl~Fn~d----~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~v---- 482 (514)
T KOG2055|consen 436 -------------------------TAITSLQFNHD----AQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKV---- 482 (514)
T ss_pred -------------------------eeeeeeeeCcc----hhhhhhhhhccccceEEEeccceeeeccCCCCCCcc----
Confidence 12333444443 22222222 122233455432221
Q ss_pred cccccchhhhhhhhhcccccccccCCCccEEEEecCCCeEeEEee
Q 005352 650 SSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFLN 694 (701)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivTgg~DG~Irvw~~ 694 (701)
+.+.|++|++. |-+++-|..+|++++|..
T Consensus 483 ---------------g~vtc~aFSP~-sG~lAvGNe~grv~l~kL 511 (514)
T KOG2055|consen 483 ---------------GHVTCMAFSPN-SGYLAVGNEAGRVHLFKL 511 (514)
T ss_pred ---------------cceEEEEecCC-CceEEeecCCCceeeEee
Confidence 35789999999 999999999999999974
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.2e-19 Score=172.95 Aligned_cols=261 Identities=18% Similarity=0.172 Sum_probs=191.0
Q ss_pred cCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceee
Q 005352 242 KGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISIL 321 (701)
Q Consensus 242 ~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (701)
..+.+.+|.+.|.+|.|+.++++||+||.|..+++|++...-...
T Consensus 48 ~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k----------------------------------- 92 (609)
T KOG4227|consen 48 CQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRK----------------------------------- 92 (609)
T ss_pred hhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhc-----------------------------------
Confidence 335678999999999999999999999999999999987531000
Q ss_pred EEeeecCCccEEEcCCccccccCCCeEEEc-CCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeecCCC---C
Q 005352 322 KSLRRTSESACVVFPPKVFRILEKPLHEFH-GHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSN---Y 396 (701)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~h~~---~ 396 (701)
..||+.... .|...|.|++|...+ .+++|..+++|.+.|+++.+.+..+.|.. .
T Consensus 93 ---------------------~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~ 151 (609)
T KOG4227|consen 93 ---------------------TPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGD 151 (609)
T ss_pred ---------------------CCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccc
Confidence 013443332 466899999998877 99999999999999999999999998765 9
Q ss_pred eEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCc----EEEEecCCCcEEEEEEeeCC-CeEEEEecCCcEEEEECCCCeee
Q 005352 397 VTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH----VVDWVDIRQIVTAVCYRPDG-QGGIVGSMMGDCRFYNVSDNHLE 471 (701)
Q Consensus 397 V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~----~~~~~~~~~~i~~i~~sp~g-~~l~~gs~dg~v~i~d~~~~~~~ 471 (701)
|+.+..+| ..+.|++.+.++.|.+||++..+ .+-..........+.|+|.. .+|++.+..+-+.+||.+.....
T Consensus 152 VY~m~~~P-~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~ 230 (609)
T KOG4227|consen 152 VYHMDQHP-TDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARP 230 (609)
T ss_pred eeecccCC-CCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccch
Confidence 99999999 68899999999999999998765 23333456678889999954 57788888899999999876533
Q ss_pred eeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCc-cceeeecc------cCCCCeEEEEEecCCCEE
Q 005352 472 LDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN-VIGKYKGL------RRSGNQLSACFTSDGKHI 544 (701)
Q Consensus 472 ~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~-~~~~~~~~------~~~~~v~~l~~s~dg~~l 544 (701)
+...-... ..........+..|+| ++..+++--....-.+||+.. ....++.- -....+.+++|.-|. .+
T Consensus 231 ~~~~~~~~-~L~~~~~~~M~~~~~~-~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v 307 (609)
T KOG4227|consen 231 VYQRSMFK-GLPQENTEWMGSLWSP-SGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY-TV 307 (609)
T ss_pred HHhhhccc-cCcccchhhhheeeCC-CCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecce-ee
Confidence 21110000 0111123346788999 566666655555556677654 23333322 123456788887664 49
Q ss_pred EEEeCCCcEEEEeCCCCC
Q 005352 545 VSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 545 ~sgs~Dg~I~iWd~~~~~ 562 (701)
++|+.+-.|+||.+....
T Consensus 308 ~tGSD~~~i~~WklP~~~ 325 (609)
T KOG4227|consen 308 ATGSDHWGIHIWKLPRAN 325 (609)
T ss_pred eccCcccceEEEecCCCc
Confidence 999999999999976543
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.7e-19 Score=175.96 Aligned_cols=287 Identities=16% Similarity=0.220 Sum_probs=206.6
Q ss_pred eeeecCcc--ccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccC-CCEEEEEeCCCcEEEEEeecCe
Q 005352 207 ERVRLNEE--DAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPD-GQYLASAGDDGVVRLWQVVEDE 283 (701)
Q Consensus 207 ~~~~~~~~--~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~I~iWd~~~~~ 283 (701)
..+.+... .+++|...|+|-+|+++...++....+ .+..|.++|.+|.|+|. -..+++.+.||+|++-|++.+.
T Consensus 192 l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~---~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i 268 (498)
T KOG4328|consen 192 LAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVY---LFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNI 268 (498)
T ss_pred EEecccCcceEEEEccCCCcEEEEecCCCCCccCceE---EeccCCccccceEecCCChhheeeeccCceeeeeeecchh
Confidence 34444443 456689999999999975555444443 35679999999999995 4578999999999999998763
Q ss_pred eeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEe
Q 005352 284 RLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS 363 (701)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s 363 (701)
.- .+..+......+..+.|+
T Consensus 269 ~e------------------------------------------------------------~v~s~~~d~~~fs~~d~~ 288 (498)
T KOG4328|consen 269 SE------------------------------------------------------------EVLSLDTDNIWFSSLDFS 288 (498)
T ss_pred hH------------------------------------------------------------HHhhcCccceeeeecccc
Confidence 11 111112233456677787
Q ss_pred cCC-eEEEEECCCcEEEEECCCCee-eeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCc-----EEEEecC
Q 005352 364 KNN-YLLSASIDKTVRLWRVGNDHC-LRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH-----VVDWVDI 435 (701)
Q Consensus 364 ~~~-~l~s~s~dg~I~iWd~~~~~~-~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~-----~~~~~~~ 435 (701)
.+. .++.+..=|...+||++++.. ...+. |...|+.++++|....+|++++.|++++|||++.-. .+....|
T Consensus 289 ~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~H 368 (498)
T KOG4328|consen 289 AESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPH 368 (498)
T ss_pred CCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccc
Confidence 776 777788778999999998765 33333 788999999999999999999999999999997532 4677889
Q ss_pred CCcEEEEEEeeCCCeEEEEecCCcEEEEECC---CCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEE
Q 005352 436 RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVS---DNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVR 512 (701)
Q Consensus 436 ~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~---~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~ 512 (701)
...|.++.|+|.+-.|++.+.|..|+|||.. ...... . ...+......--......|.| +..++++|-.-..|-
T Consensus 369 rrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~-~-~I~Hn~~t~RwlT~fKA~W~P-~~~li~vg~~~r~ID 445 (498)
T KOG4328|consen 369 RRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPL-G-TIPHNNRTGRWLTPFKAAWDP-DYNLIVVGRYPRPID 445 (498)
T ss_pred cceeeeeEEcCCCCceEeeccCCceEEeecccccccCCcc-c-eeeccCcccccccchhheeCC-CccEEEEeccCccee
Confidence 9999999999988889999999999999984 111110 0 111222222222344567999 789999999999999
Q ss_pred EEeCCccceeeecccCC-CCeEE-EEEecCCCEEEEE-eCCCcEEEEeCC
Q 005352 513 ILQGPNVIGKYKGLRRS-GNQLS-ACFTSDGKHIVSA-GEDSNVYMWNCI 559 (701)
Q Consensus 513 iwd~~~~~~~~~~~~~~-~~v~~-l~~s~dg~~l~sg-s~Dg~I~iWd~~ 559 (701)
|+|..........+... ..|.+ ..|+|-+..+++| +.-|.|+||--+
T Consensus 446 v~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 446 VFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred EEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEecC
Confidence 99988766555543222 23433 4699988855554 567889998643
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-17 Score=179.15 Aligned_cols=456 Identities=15% Similarity=0.167 Sum_probs=272.4
Q ss_pred CccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCC---CEEEEEeCCCcEEEEEeecCeeeeee
Q 005352 212 NEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDG---QYLASAGDDGVVRLWQVVEDERLTEV 288 (701)
Q Consensus 212 ~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg---~~Lasgs~Dg~I~iWd~~~~~~~~~~ 288 (701)
++...+++..++.|+||..... .+...+.+|..+++.+.+.|.. .++.+++.||.|++||...+..+..+
T Consensus 26 nD~k~l~~~~~~~V~VyS~~Tg-------~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~ 98 (792)
T KOG1963|consen 26 NDAKFLFLCTGNFVKVYSTATG-------ECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTF 98 (792)
T ss_pred cCCcEEEEeeCCEEEEEecchH-------hhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEE
Confidence 3455566778899999964332 2334678899999999998854 47889999999999999999988887
Q ss_pred cCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCCeE
Q 005352 289 DIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYL 368 (701)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~l 368 (701)
..........+. +.....-..+.........+.............+.... ........+..|.. -.+|.+++.+.+
T Consensus 99 ~~~~~v~~~~~~-~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t--~~~~~~d~~~~~~~-~~~I~~~~~ge~ 174 (792)
T KOG1963|consen 99 DNNLPVHALVYK-PAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLAT--FDSAKGDFLKEHQE-PKSIVDNNSGEF 174 (792)
T ss_pred ecCCceeEEEec-hhHhCccceeEeecccceeeeecccccccceeeeEeee--ccccchhhhhhhcC-CccEEEcCCceE
Confidence 655433222221 11111001111111111111111111110000000000 00111222233322 356777888866
Q ss_pred EEEECCCcEEEEECCCCeeeee-----ecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCC-----CcEEEEecCCCc
Q 005352 369 LSASIDKTVRLWRVGNDHCLRV-----FPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS-----CHVVDWVDIRQI 438 (701)
Q Consensus 369 ~s~s~dg~I~iWd~~~~~~~~~-----~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~-----~~~~~~~~~~~~ 438 (701)
...-.+..+.+|+..++..... ..|...++|.+++| +++++++|..||.|.+|.--. .....+.-|...
T Consensus 175 ~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~sp-n~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~ 253 (792)
T KOG1963|consen 175 KGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSP-NERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDE 253 (792)
T ss_pred EEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEecc-ccceEEEeccCCcEEEEeccccccccccceEEEecccc
Confidence 6666677899999887651111 12777799999999 999999999999999995332 123334457889
Q ss_pred EEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCc
Q 005352 439 VTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN 518 (701)
Q Consensus 439 i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~ 518 (701)
|++++|+++|.+|++|+..|.+.+|.+.+++.++ ......+|..+.++| ++.+.+....|++|.+....+
T Consensus 254 V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqf---------LPRLgs~I~~i~vS~-ds~~~sl~~~DNqI~li~~~d 323 (792)
T KOG1963|consen 254 VNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQF---------LPRLGSPILHIVVSP-DSDLYSLVLEDNQIHLIKASD 323 (792)
T ss_pred cceeEEecCCceEeecccceEEEEEeecCCCccc---------ccccCCeeEEEEEcC-CCCeEEEEecCceEEEEeccc
Confidence 9999999999999999999999999999987443 222347899999999 788899999999999998754
Q ss_pred cceeeec-----------ccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCCCCcccccccccccc--ccCCceEE
Q 005352 519 VIGKYKG-----------LRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLER--FTTNASIA 585 (701)
Q Consensus 519 ~~~~~~~-----------~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~--~~~~~~~a 585 (701)
....... .+..+-.+.++++|.-+.++-.+..|.|.+||+-+.......+.-....... .....+++
T Consensus 324 l~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~ita 403 (792)
T KOG1963|consen 324 LEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITA 403 (792)
T ss_pred hhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeee
Confidence 3221111 1134556788999977778888899999999998766422111000000000 00001111
Q ss_pred ecCC--C---------------------CCCCCCCCCCcc-------ccCCCCCCCccccCCCccccCccccccCCCCcc
Q 005352 586 IPWC--G---------------------LKCGNAEKEPQL-------HVSDDDSPENLAFAPARFSLGQEYVFESFPKGC 635 (701)
Q Consensus 586 ~~~~--~---------------------~~~~~~~~~~~~-------~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~ 635 (701)
+... | .++|......+. ...+.......++.+...+ .++++.+.++.+
T Consensus 404 v~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs--~~~vta~~dg~~ 481 (792)
T KOG1963|consen 404 VARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRS--VRCVTASVDGDF 481 (792)
T ss_pred ehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCccc--ceeEEeccCCeE
Confidence 1111 1 012211111110 0112222233344332112 278889999999
Q ss_pred cCCCCccCCCCccccccccchhhhhhhhhcccccccccCCCccEEEEecCCCeEeEEee
Q 005352 636 ATWPEEKLPALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFLN 694 (701)
Q Consensus 636 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivTgg~DG~Irvw~~ 694 (701)
++|-+.....+.+.... -.......+++..+..++|+.+ |. +++.+.|+.|-+|+-
T Consensus 482 KiW~~~~~~n~~k~~s~-W~c~~i~sy~k~~i~a~~fs~d-Gs-lla~s~~~~Itiwd~ 537 (792)
T KOG1963|consen 482 KIWVFTDDSNIYKKSSN-WTCKAIGSYHKTPITALCFSQD-GS-LLAVSFDDTITIWDY 537 (792)
T ss_pred EEEEEecccccCcCccc-eEEeeeeccccCcccchhhcCC-Cc-EEEEecCCEEEEecC
Confidence 99998554444332110 0011111135667788888888 84 557788899999974
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.5e-18 Score=169.85 Aligned_cols=266 Identities=20% Similarity=0.257 Sum_probs=188.8
Q ss_pred cCcccccc---ccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEeecCeeee
Q 005352 211 LNEEDAMF---CSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSP-DGQYLASAGDDGVVRLWQVVEDERLT 286 (701)
Q Consensus 211 ~~~~~~~~---~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~I~iWd~~~~~~~~ 286 (701)
.++.++++ ++..|-..|--+.+..+-- ..+ ..+.||+++|..++|+| +...|||||+|.+|.||++..+....
T Consensus 42 vNPkfiAvi~easgGgaf~ViPl~k~Gr~d-~~~--P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~ 118 (472)
T KOG0303|consen 42 VNPKFVAVIIEASGGGAFLVIPLVKTGRMD-ASY--PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTR 118 (472)
T ss_pred cCCceEEEEEecCCCcceeecccccccccC-CCC--CCccCccccccccccCccCCceeecCCCCceEEEEECCCccccc
Confidence 34455444 3444455555444333211 111 23678999999999999 45689999999999999997764322
Q ss_pred eecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC
Q 005352 287 EVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN 366 (701)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~ 366 (701)
.+ ..|+..+.||...|--++|+|.-
T Consensus 119 ~l-------------------------------------------------------tepvv~L~gH~rrVg~V~wHPtA 143 (472)
T KOG0303|consen 119 DL-------------------------------------------------------TEPVVELYGHQRRVGLVQWHPTA 143 (472)
T ss_pred Cc-------------------------------------------------------ccceEEEeecceeEEEEeecccc
Confidence 21 16788999999999999999976
Q ss_pred --eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEe-cCCC-cEEEE
Q 005352 367 --YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV-DIRQ-IVTAV 442 (701)
Q Consensus 367 --~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~-~~~~-~i~~i 442 (701)
.|++++.|.+|.+||+.+++.+..+.|.+.|+++.|+. ++.+|++.+.|.+|||||.++++++... .|.+ ....+
T Consensus 144 ~NVLlsag~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~-dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Ra 222 (472)
T KOG0303|consen 144 PNVLLSAGSDNTVSIWNVGTGEALITLDHPDMVYSMSFNR-DGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARA 222 (472)
T ss_pred hhhHhhccCCceEEEEeccCCceeeecCCCCeEEEEEecc-CCceeeeecccceeEEEcCCCCcEeeecccccCCCccee
Confidence 89999999999999999999999999999999999998 9999999999999999999999988544 4543 35566
Q ss_pred EEeeCCCeEEEEe---cCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCcc
Q 005352 443 CYRPDGQGGIVGS---MMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV 519 (701)
Q Consensus 443 ~~sp~g~~l~~gs---~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~ 519 (701)
.|-.+|..+-+|. .+..+-+||..+-.... ..+.. ...+.|.---|.++..-..++|-.|+.||.|.+.+.
T Consensus 223 ifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~----~~~el--DtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 223 IFLASGKIFTTGFSRMSERQIALWDPNNLEEPI----ALQEL--DTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNE 296 (472)
T ss_pred EEeccCceeeeccccccccceeccCcccccCcc----eeEEe--ccCCceEEeeecCCCCEEEEEecCCcceEEEEecCC
Confidence 7778888555553 36778999976543221 11111 111334434456644445566667999999998753
Q ss_pred c---eeeecccCCCCeEEEEEecCC
Q 005352 520 I---GKYKGLRRSGNQLSACFTSDG 541 (701)
Q Consensus 520 ~---~~~~~~~~~~~v~~l~~s~dg 541 (701)
. .-+..+....+...+.|-|..
T Consensus 297 ~P~~hyln~f~S~epQRG~g~mPKR 321 (472)
T KOG0303|consen 297 PPFVHYLNTFSSKEPQRGMGFMPKR 321 (472)
T ss_pred CceeEEecccccCCccccccccccc
Confidence 3 222333345566667776653
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-18 Score=166.67 Aligned_cols=275 Identities=23% Similarity=0.334 Sum_probs=198.1
Q ss_pred cccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccC----CCEEEEEeCCCcEEEEEeecCeeeeeecCC
Q 005352 216 AMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPD----GQYLASAGDDGVVRLWQVVEDERLTEVDIP 291 (701)
Q Consensus 216 ~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd----g~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~ 291 (701)
+++....+++.+|.+..... ...+... .=..|...-..++|+-+ ..+||.||.-|.|+|.|+.+++
T Consensus 57 vfatvG~~rvtiy~c~~d~~-ir~lq~y-~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~-------- 126 (385)
T KOG1034|consen 57 VFATVGGNRVTIYECPGDGG-IRLLQSY-ADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQ-------- 126 (385)
T ss_pred eEEEeCCcEEEEEEECCccc-eeeeeec-cCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhh--------
Confidence 34445567888998765431 1111100 00147888899999764 4589999999999999998874
Q ss_pred CCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC--eEE
Q 005352 292 EIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLL 369 (701)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~--~l~ 369 (701)
....+.+|...|..|.++|.. +++
T Consensus 127 ------------------------------------------------------~~~~~~ghG~sINeik~~p~~~qlvl 152 (385)
T KOG1034|consen 127 ------------------------------------------------------CSKNYRGHGGSINEIKFHPDRPQLVL 152 (385)
T ss_pred ------------------------------------------------------hccceeccCccchhhhcCCCCCcEEE
Confidence 234567899999999999988 999
Q ss_pred EEECCCcEEEEECCCCeeeeeec----CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEE-------------
Q 005352 370 SASIDKTVRLWRVGNDHCLRVFP----HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDW------------- 432 (701)
Q Consensus 370 s~s~dg~I~iWd~~~~~~~~~~~----h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~------------- 432 (701)
++|.|.+|++|++++..|+..|. |.+.|.++.|++ ++.+|++++.|.+|++|++...+....
T Consensus 153 s~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~-~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~ 231 (385)
T KOG1034|consen 153 SASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSL-DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTT 231 (385)
T ss_pred EecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcC-CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCcc
Confidence 99999999999999999999997 999999999999 999999999999999999985432110
Q ss_pred ----------------ecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeee------eeeeEEeecccCCCCCCee
Q 005352 433 ----------------VDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLE------LDAEICVHSKKKAPCKRIT 490 (701)
Q Consensus 433 ----------------~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~------~~~~~~~~~~~~~~~~~i~ 490 (701)
-.|...|-|+.|- |.++++-+-++.|..|....-+.. .+...............|.
T Consensus 232 ~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iW 309 (385)
T KOG1034|consen 232 RPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIW 309 (385)
T ss_pred CcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceE
Confidence 0122333344443 568888888899999987321110 0111111112223334455
Q ss_pred EEE--EecCCCCEEEEEECCCcEEEEeCCccce----eeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 005352 491 GFQ--FLPQDSSKVMVSCADSQVRILQGPNVIG----KYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNC 558 (701)
Q Consensus 491 ~l~--~~p~~~~~l~~~s~dg~I~iwd~~~~~~----~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~ 558 (701)
-+. |.| -...|+.|...|.|++||+..... ++........|...+|+.||.+|+...+|++|.-||.
T Consensus 310 firf~~d~-~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 310 FIRFAFDP-WQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred EEEEeecH-HHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 444 455 467899999999999999985433 2222334567899999999999999999999999985
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.5e-18 Score=175.78 Aligned_cols=144 Identities=15% Similarity=0.209 Sum_probs=109.2
Q ss_pred ECCCcEEEEeCCcccee----eecccCCCCeEEEEEec-CCCEEEEEeCCCcEEEEeCCCCCCCCccccccccccccccC
Q 005352 506 CADSQVRILQGPNVIGK----YKGLRRSGNQLSACFTS-DGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTT 580 (701)
Q Consensus 506 s~dg~I~iwd~~~~~~~----~~~~~~~~~v~~l~~s~-dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~ 580 (701)
+..|.|-||+++..-.. +.+..+...|+.+.|.| |...|+.+++||.|++|.+..+..+..
T Consensus 600 g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~-------------- 665 (1012)
T KOG1445|consen 600 GSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPEN-------------- 665 (1012)
T ss_pred CCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcc--------------
Confidence 44678888888754332 23344667899999999 678999999999999999987653221
Q ss_pred CceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCCcccCCCCccCCCCccccccccchhhhh
Q 005352 581 NASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLSSASALHKSQY 660 (701)
Q Consensus 581 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~ 660 (701)
..........+...+..+.|.|- .+..+++.+.|-+|++|+...+..-.++.+|
T Consensus 666 ---------------~~tPe~~lt~h~eKI~slRfHPL---AadvLa~asyd~Ti~lWDl~~~~~~~~l~gH-------- 719 (1012)
T KOG1445|consen 666 ---------------EMTPEKILTIHGEKITSLRFHPL---AADVLAVASYDSTIELWDLANAKLYSRLVGH-------- 719 (1012)
T ss_pred ---------------cCCcceeeecccceEEEEEecch---hhhHhhhhhccceeeeeehhhhhhhheeccC--------
Confidence 00111122223445777788885 3566788899999999999999888888888
Q ss_pred hhhhcccccccccCCCccEEEEecCCCeEeEEe
Q 005352 661 KFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFL 693 (701)
Q Consensus 661 ~~~~~~~~~~~~~~~~g~~ivTgg~DG~Irvw~ 693 (701)
.+.++.++++++ |+.|+|-+.||+||||.
T Consensus 720 ---tdqIf~~AWSpd-Gr~~AtVcKDg~~rVy~ 748 (1012)
T KOG1445|consen 720 ---TDQIFGIAWSPD-GRRIATVCKDGTLRVYE 748 (1012)
T ss_pred ---cCceeEEEECCC-CcceeeeecCceEEEeC
Confidence 578999999999 99999999999999996
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1e-18 Score=168.27 Aligned_cols=281 Identities=17% Similarity=0.253 Sum_probs=195.9
Q ss_pred cccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEcc--CCCEEEEEeCCCcEEEEEeecCeeeeeecCC
Q 005352 214 EDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSP--DGQYLASAGDDGVVRLWQVVEDERLTEVDIP 291 (701)
Q Consensus 214 ~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp--dg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~ 291 (701)
..++++-..|.|++|+.... ...+++++|.+.+..|+|.. .+..+.+|+.||+|++||+........
T Consensus 41 ~~vav~lSngsv~lyd~~tg-------~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~---- 109 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTG-------QLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESAR---- 109 (376)
T ss_pred eeEEEEecCCeEEEEeccch-------hhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhh----
Confidence 34667888999999986541 12256888999999999976 466799999999999999988653322
Q ss_pred CCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCc-cCeEEEEEecCC-eEE
Q 005352 292 EIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHS-GEILDLSWSKNN-YLL 369 (701)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~I~~l~~s~~~-~l~ 369 (701)
..+..|. .+..+++..-.+ .++
T Consensus 110 --------------------------------------------------------~~~~~~~~~~f~~ld~nck~~ii~ 133 (376)
T KOG1188|consen 110 --------------------------------------------------------ISWTQQSGTPFICLDLNCKKNIIA 133 (376)
T ss_pred --------------------------------------------------------eeccCCCCCcceEeeccCcCCeEE
Confidence 2223333 345566655444 555
Q ss_pred EEE----CCCcEEEEECCCCee-eeeec--CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCC----cEEEEecCCCc
Q 005352 370 SAS----IDKTVRLWRVGNDHC-LRVFP--HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSC----HVVDWVDIRQI 438 (701)
Q Consensus 370 s~s----~dg~I~iWd~~~~~~-~~~~~--h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~----~~~~~~~~~~~ 438 (701)
+|. .+-.|.+||++..+. +..+. |.+.|+++.|+|.+.++|++|+.||.|.+||+... .++..+.+...
T Consensus 134 ~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sS 213 (376)
T KOG1188|consen 134 CGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSS 213 (376)
T ss_pred eccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccce
Confidence 554 356799999998876 66664 99999999999999999999999999999999764 24467778888
Q ss_pred EEEEEEeeCC-CeEEEEecCCcEEEEECCCCeeeeeeeEEee----cccCCCCCCeeEEEEecCCCCEEEEEEC-CCcEE
Q 005352 439 VTAVCYRPDG-QGGIVGSMMGDCRFYNVSDNHLELDAEICVH----SKKKAPCKRITGFQFLPQDSSKVMVSCA-DSQVR 512 (701)
Q Consensus 439 i~~i~~sp~g-~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~----~~~~~~~~~i~~l~~~p~~~~~l~~~s~-dg~I~ 512 (701)
|..+.|..++ +.|.+-+......+|+++.+........... .........+.. ..+|.+....+.++. -+...
T Consensus 214 I~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~-~~~~~~~~~~~l~g~~~n~~~ 292 (376)
T KOG1188|consen 214 IHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVIN-EHSPGDKDTCALAGTDSNKGT 292 (376)
T ss_pred eeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheee-cccCCCcceEEEeccccCcee
Confidence 9999999877 4688889999999999998764322211100 001111111111 234545566666555 56666
Q ss_pred EEeCCc------cceeeeccc-CCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 513 ILQGPN------VIGKYKGLR-RSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 513 iwd~~~------~~~~~~~~~-~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
++-+.. ........+ |..-|.++.|...+.++.||++||.+.+|......
T Consensus 293 ~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~da~ 349 (376)
T KOG1188|consen 293 IFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVEDAT 349 (376)
T ss_pred EEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecCCcc
Confidence 654331 111122222 56677888898899999999999999999975443
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.4e-19 Score=181.26 Aligned_cols=260 Identities=18% Similarity=0.272 Sum_probs=191.1
Q ss_pred eeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEe
Q 005352 245 EIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSL 324 (701)
Q Consensus 245 ~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (701)
++..|...|+.++|.|....|++|+.||+|++|+++......
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~-------------------------------------- 330 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSA-------------------------------------- 330 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCcc--------------------------------------
Confidence 567799999999999999999999999999999994311000
Q ss_pred eecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCC------e----eee-eec
Q 005352 325 RRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGND------H----CLR-VFP 392 (701)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~------~----~~~-~~~ 392 (701)
...-+++.+|.+|.++|.|+++.+++ ++++|+.||+|+.|++... . ... ...
T Consensus 331 ----------------~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~G 394 (577)
T KOG0642|consen 331 ----------------EKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLG 394 (577)
T ss_pred ----------------ccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceec
Confidence 00117889999999999999999999 9999999999999976421 1 111 224
Q ss_pred CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEE--ecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCee
Q 005352 393 HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDW--VDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHL 470 (701)
Q Consensus 393 h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~--~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~ 470 (701)
|.+.|+.+++++ ....|++++.||++++|+........+ ....+..+++.+.... ++....+.....+++.+...
T Consensus 395 htdavw~l~~s~-~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~--~a~~~~s~~~~~~~~~~~ev 471 (577)
T KOG0642|consen 395 HTDAVWLLALSS-TKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSR--PAHSLASFRFGYTSIDDMEV 471 (577)
T ss_pred cccceeeeeecc-cccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccch--hHhhhhhcccccccchhhhh
Confidence 999999999999 788899999999999999877666322 2223345555554332 12222233444444443322
Q ss_pred eeeeeEEeec--ccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEe
Q 005352 471 ELDAEICVHS--KKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAG 548 (701)
Q Consensus 471 ~~~~~~~~~~--~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs 548 (701)
.....+.... ........+..+.++| ...+.+++..|+.|+++|..+....+....|...++++++.|+|-+|++++
T Consensus 472 ~s~~~~~~s~~~~~~~~~~~in~vVs~~-~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s 550 (577)
T KOG0642|consen 472 VSDLLIFESSASPGPRRYPQINKVVSHP-TADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGS 550 (577)
T ss_pred hhheeeccccCCCcccccCccceEEecC-CCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeec
Confidence 2221111111 0112235677788888 678999999999999999998888877777999999999999999999999
Q ss_pred CCCcEEEEeCCCCC
Q 005352 549 EDSNVYMWNCIGHE 562 (701)
Q Consensus 549 ~Dg~I~iWd~~~~~ 562 (701)
.|+.+++|++....
T Consensus 551 ~d~sv~l~kld~k~ 564 (577)
T KOG0642|consen 551 HDGSVRLWKLDVKT 564 (577)
T ss_pred CCceeehhhccchh
Confidence 99999999987654
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=5e-18 Score=163.61 Aligned_cols=192 Identities=16% Similarity=0.205 Sum_probs=153.3
Q ss_pred CeEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeC-CCCEEEEEEcCCcEEEEeCCCCcEE---EEecCC-CcE
Q 005352 366 NYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPV-DDNYFISGSIDGKVRIWAVLSCHVV---DWVDIR-QIV 439 (701)
Q Consensus 366 ~~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~-~~~~l~sgs~dg~v~iwd~~~~~~~---~~~~~~-~~i 439 (701)
..++++-..|.|++||..+++.+..|+ ++..++.+.|... ....+.+++.||+|++||++..... .+..+. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 368888889999999999999999998 7788888888763 3678999999999999999987544 333333 456
Q ss_pred EEEEEeeCCCeEEEEec----CCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEe
Q 005352 440 TAVCYRPDGQGGIVGSM----MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQ 515 (701)
Q Consensus 440 ~~i~~sp~g~~l~~gs~----dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd 515 (701)
.+++..-.++.+++|+. +-.|.+||++..+.. +......|...|++++|+|.++++|++|+.||.|.+||
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~------l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD 194 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQL------LRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFD 194 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccch------hhhhhhhccCcceeEEecCCCCCeEEeecccceEEeee
Confidence 67776667788888765 567999999987653 23345678899999999999999999999999999999
Q ss_pred CCccc---eeeecccCCCCeEEEEEecCC-CEEEEEeCCCcEEEEeCCCCCC
Q 005352 516 GPNVI---GKYKGLRRSGNQLSACFTSDG-KHIVSAGEDSNVYMWNCIGHEE 563 (701)
Q Consensus 516 ~~~~~---~~~~~~~~~~~v~~l~~s~dg-~~l~sgs~Dg~I~iWd~~~~~~ 563 (701)
++... .......+...|..+.|..++ +.|.+-+.....++|+++.+.+
T Consensus 195 ~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~ 246 (376)
T KOG1188|consen 195 TKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSE 246 (376)
T ss_pred cCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCCh
Confidence 87432 222233467789999999877 5688889999999999998874
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3e-18 Score=171.94 Aligned_cols=208 Identities=19% Similarity=0.269 Sum_probs=175.3
Q ss_pred cccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCC
Q 005352 214 EDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEI 293 (701)
Q Consensus 214 ~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~ 293 (701)
-+++.|+..+.|+|||++ .....+.+++|+..|++|.+.....|||+++..|-|.|..+.++....++..
T Consensus 92 ~y~~sgG~~~~Vkiwdl~-------~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~--- 161 (673)
T KOG4378|consen 92 LYEISGGQSGCVKIWDLR-------AKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTI--- 161 (673)
T ss_pred eeeeccCcCceeeehhhH-------HHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceec---
Confidence 466779999999999765 2233456788999999999999999999999999999999988764433321
Q ss_pred CCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC--eEEEE
Q 005352 294 DPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLSA 371 (701)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~--~l~s~ 371 (701)
+....|.-+.|++.. +|.++
T Consensus 162 ----------------------------------------------------------~sgqsvRll~ys~skr~lL~~a 183 (673)
T KOG4378|consen 162 ----------------------------------------------------------DSGQSVRLLRYSPSKRFLLSIA 183 (673)
T ss_pred ----------------------------------------------------------CCCCeEEEeecccccceeeEee
Confidence 123456688999987 88899
Q ss_pred ECCCcEEEEECCCCeeeeeec--CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCC
Q 005352 372 SIDKTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQ 449 (701)
Q Consensus 372 s~dg~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~ 449 (701)
+.+|.|.+||+....++..+. |..+...|+|+|.+..+|++.+.|..|.+||++..+....+....+.+.++|.++|.
T Consensus 184 sd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~ 263 (673)
T KOG4378|consen 184 SDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGT 263 (673)
T ss_pred ccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCCcceeeecCCce
Confidence 999999999999888877665 999999999999999999999999999999999988888888889999999999999
Q ss_pred eEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEec
Q 005352 450 GGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLP 496 (701)
Q Consensus 450 ~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p 496 (701)
+|++|+..|.|..||++..+.... ....|...|++++|-|
T Consensus 264 ~L~aG~s~G~~i~YD~R~~k~Pv~-------v~sah~~sVt~vafq~ 303 (673)
T KOG4378|consen 264 YLCAGNSKGELIAYDMRSTKAPVA-------VRSAHDASVTRVAFQP 303 (673)
T ss_pred EEEeecCCceEEEEecccCCCCce-------EeeecccceeEEEeee
Confidence 999999999999999998764432 1334556799999988
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.2e-19 Score=192.81 Aligned_cols=276 Identities=14% Similarity=0.201 Sum_probs=209.8
Q ss_pred cccceEEEEEccCccchh--hhcccCceeccCCCcEEEEEEccCCCE----EEEEeCCCcEEEEEeecCeeeeeecCCCC
Q 005352 220 SKVQRVKVYHCKKRSKEL--SALYKGQEIQAHDGSILTMKFSPDGQY----LASAGDDGVVRLWQVVEDERLTEVDIPEI 293 (701)
Q Consensus 220 ~~d~~v~vw~~~~~~~~~--~~~~~~~~l~~H~~~I~~l~fspdg~~----Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~ 293 (701)
+.+.++-||.+.....+. .... .++ -...-+.++|.+.|.. ||.|.+||.|.+||...-..-
T Consensus 36 st~~slEifeld~~~~~~dlk~~~---s~~-s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~-------- 103 (1049)
T KOG0307|consen 36 STSASLEIFELDFSDESSDLKPVG---SLQ-SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIAN-------- 103 (1049)
T ss_pred ccccccceeeecccCccccccccc---ccc-ccccceeeeecccCCCccceeeccccCCceEEecchhhccC--------
Confidence 556667777665443321 1111 111 2345778999987765 899999999999997652100
Q ss_pred CCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC--eEEEE
Q 005352 294 DPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLSA 371 (701)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~--~l~s~ 371 (701)
.....+..+..|++.|..|.|++.. .|++|
T Consensus 104 ------------------------------------------------~~~~~la~~~~h~G~V~gLDfN~~q~nlLASG 135 (1049)
T KOG0307|consen 104 ------------------------------------------------ASEEVLATKSKHTGPVLGLDFNPFQGNLLASG 135 (1049)
T ss_pred ------------------------------------------------cchHHHhhhcccCCceeeeeccccCCceeecc
Confidence 0013445667899999999999976 99999
Q ss_pred ECCCcEEEEECCCCeeeeeec---CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEE-EEecCC--CcEEEEEEe
Q 005352 372 SIDKTVRLWRVGNDHCLRVFP---HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIR--QIVTAVCYR 445 (701)
Q Consensus 372 s~dg~I~iWd~~~~~~~~~~~---h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~-~~~~~~--~~i~~i~~s 445 (701)
+.||.|.|||+.+-+.-..+. ....|.+++|+......|++++.+|.+.|||++..+.+ .+..+. ..+..++|+
T Consensus 136 a~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~Wh 215 (1049)
T KOG0307|consen 136 ADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWH 215 (1049)
T ss_pred CCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeC
Confidence 999999999998865444442 56789999999877888999999999999999987655 433332 458899999
Q ss_pred eCC-CeEEEEecCC---cEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccce
Q 005352 446 PDG-QGGIVGSMMG---DCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIG 521 (701)
Q Consensus 446 p~g-~~l~~gs~dg---~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~ 521 (701)
|+. ..+++++.|. .|.+||++...-.. .....|...|.++.|++.|..++++++.|++|.+|+..+...
T Consensus 216 P~~aTql~~As~dd~~PviqlWDlR~assP~-------k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEv 288 (1049)
T KOG0307|consen 216 PDHATQLLVASGDDSAPVIQLWDLRFASSPL-------KILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEV 288 (1049)
T ss_pred CCCceeeeeecCCCCCceeEeecccccCCch-------hhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceE
Confidence 976 4666776654 48999988643221 123567789999999999889999999999999999998777
Q ss_pred eeecccCCCCeEEEEEecCCC-EEEEEeCCCcEEEEeCCCCC
Q 005352 522 KYKGLRRSGNQLSACFTSDGK-HIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 522 ~~~~~~~~~~v~~l~~s~dg~-~l~sgs~Dg~I~iWd~~~~~ 562 (701)
..........+..+.|.|... .++.++-||.|-||.+.+..
T Consensus 289 l~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 289 LGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred eeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 777766788999999999775 78889999999999998765
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.7e-18 Score=162.27 Aligned_cols=295 Identities=16% Similarity=0.270 Sum_probs=208.5
Q ss_pred eccCCCcEEEEEEcc-----CCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeecccccee
Q 005352 246 IQAHDGSILTMKFSP-----DGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISI 320 (701)
Q Consensus 246 l~~H~~~I~~l~fsp-----dg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (701)
...|+.+|..++|.+ .-+.+||+|. ..+.+|.......+..+
T Consensus 34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~l-------------------------------- 80 (385)
T KOG1034|consen 34 KEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLL-------------------------------- 80 (385)
T ss_pred hccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeee--------------------------------
Confidence 346889999999985 2457888887 46889987553211111
Q ss_pred eEEeeecCCccEEEcCCccccccCCCeEEE--cCCccCeEEEEEecC----C-eEEEEECCCcEEEEECCCCeeeeeec-
Q 005352 321 LKSLRRTSESACVVFPPKVFRILEKPLHEF--HGHSGEILDLSWSKN----N-YLLSASIDKTVRLWRVGNDHCLRVFP- 392 (701)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~I~~l~~s~~----~-~l~s~s~dg~I~iWd~~~~~~~~~~~- 392 (701)
+.+ ..|......++|+-+ + +++.++.-|.|+|.|+.++++...+.
T Consensus 81 ---------------------------q~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~g 133 (385)
T KOG1034|consen 81 ---------------------------QSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRG 133 (385)
T ss_pred ---------------------------eeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceec
Confidence 111 125566677777653 2 89999999999999999999988876
Q ss_pred CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEe----cCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCC
Q 005352 393 HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV----DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDN 468 (701)
Q Consensus 393 h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~----~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~ 468 (701)
|...|+.|.|+|.+.+++++++.|..||+|++++..++..+ +|++.|.++.|+++|.+|++++.|..+++|++...
T Consensus 134 hG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~ 213 (385)
T KOG1034|consen 134 HGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVK 213 (385)
T ss_pred cCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChh
Confidence 99999999999988899999999999999999999988655 58899999999999999999999999999999844
Q ss_pred eeeeeee--------------------EEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCcccee---ee-
Q 005352 469 HLELDAE--------------------ICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGK---YK- 524 (701)
Q Consensus 469 ~~~~~~~--------------------~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~---~~- 524 (701)
+.....+ +........|...|.|+.|. ++++++-+-++.|..|...+.... .+
T Consensus 214 ~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~---gd~ilSkscenaI~~w~pgkl~e~~~~vkp 290 (385)
T KOG1034|consen 214 EFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF---GDFILSKSCENAIVCWKPGKLEESIHNVKP 290 (385)
T ss_pred HHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH---hhheeecccCceEEEEecchhhhhhhccCC
Confidence 3211110 00111223344555666663 478999999999999986322111 10
Q ss_pred ----------cccCCCCeEE--EEEecCCCEEEEEeCCCcEEEEeCCCCCCCCccccccccccccccCCceEEecCCCCC
Q 005352 525 ----------GLRRSGNQLS--ACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLK 592 (701)
Q Consensus 525 ----------~~~~~~~v~~--l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 592 (701)
..-....|.- .+|.|-++.||.|...|.|++||+++.+++..
T Consensus 291 ~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~-------------------------- 344 (385)
T KOG1034|consen 291 PESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKC-------------------------- 344 (385)
T ss_pred CccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccC--------------------------
Confidence 0012333444 45567789999999999999999998874310
Q ss_pred CCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCCcccCCC
Q 005352 593 CGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWP 639 (701)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~ 639 (701)
....+......+++.+|+.+ +..++....|+.+--|+
T Consensus 345 ------ttl~~s~~~~tVRQ~sfS~d----gs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 345 ------TTLTHSKSGSTVRQTSFSRD----GSILVLVCDDGTVWRWD 381 (385)
T ss_pred ------ceEEeccccceeeeeeeccc----CcEEEEEeCCCcEEEEE
Confidence 11122223344566677776 56666777777776665
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.7e-17 Score=155.58 Aligned_cols=248 Identities=18% Similarity=0.276 Sum_probs=178.0
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEE
Q 005352 254 LTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACV 333 (701)
Q Consensus 254 ~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (701)
..+.|+|||..|++-+.|..+++|++...-....... . +.+
T Consensus 53 kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~------~-------------~~~-------------------- 93 (406)
T KOG2919|consen 53 KGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADG------P-------------LNF-------------------- 93 (406)
T ss_pred ccceeCCCCceEEeecccCeeeEEecChhhcccCCCC------c-------------ccc--------------------
Confidence 4689999999999999999999999854321000000 0 000
Q ss_pred EcCCccccccCCCeEEE-cCCccCeEEEEEe-------cCC-eEEEEECCCcEEEEECCCCeeeeeec---CCC---CeE
Q 005352 334 VFPPKVFRILEKPLHEF-HGHSGEILDLSWS-------KNN-YLLSASIDKTVRLWRVGNDHCLRVFP---HSN---YVT 398 (701)
Q Consensus 334 ~~~~~~~~~~~~~~~~~-~~h~~~I~~l~~s-------~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~---h~~---~V~ 398 (701)
+...++ ......|.+.+|- |+. ++++.+.+.-|++||.-+++....+. |.. ...
T Consensus 94 -----------~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAh 162 (406)
T KOG2919|consen 94 -----------SKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAH 162 (406)
T ss_pred -----------ccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhhe
Confidence 000011 1123457777775 344 89999999999999999999887775 433 456
Q ss_pred EEEEeeCCCCEEEEEEcCCcEEEEeC-CCCcEE---EE-----ecCCCcEEEEEEee-CCCeEEEEecCCcEEEEECCCC
Q 005352 399 CVHFNPVDDNYFISGSIDGKVRIWAV-LSCHVV---DW-----VDIRQIVTAVCYRP-DGQGGIVGSMMGDCRFYNVSDN 468 (701)
Q Consensus 399 ~l~f~p~~~~~l~sgs~dg~v~iwd~-~~~~~~---~~-----~~~~~~i~~i~~sp-~g~~l~~gs~dg~v~i~d~~~~ 468 (701)
+++|+| |+.+|++|. ...|++||+ +.++-. .. .+..+.|.+++|+| +...+++|+...++-||.-...
T Consensus 163 sL~Fs~-DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~ 240 (406)
T KOG2919|consen 163 SLQFSP-DGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR 240 (406)
T ss_pred eEEecC-CCCeEeecc-cceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCC
Confidence 899999 999999876 678999999 555322 22 23367799999999 4558999999999999987766
Q ss_pred eeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEEC-CCcEEEEeCCcccee-eecccCCC-CeE--EEEEecCCCE
Q 005352 469 HLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCA-DSQVRILQGPNVIGK-YKGLRRSG-NQL--SACFTSDGKH 543 (701)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~-dg~I~iwd~~~~~~~-~~~~~~~~-~v~--~l~~s~dg~~ 543 (701)
.... ....|.+.|+.++|++ +++.|++|+. +..|..||++..... +...+|.. .-. -....|++++
T Consensus 241 ~pl~--------llggh~gGvThL~~~e-dGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~ 311 (406)
T KOG2919|consen 241 RPLQ--------LLGGHGGGVTHLQWCE-DGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEI 311 (406)
T ss_pred Ccee--------eecccCCCeeeEEecc-CcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCce
Confidence 5432 1336778999999999 6788888876 889999999854433 33333433 222 3445689999
Q ss_pred EEEEeCCCcEEEEeCCCCC
Q 005352 544 IVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 544 l~sgs~Dg~I~iWd~~~~~ 562 (701)
|++|+.||.|++||+++.-
T Consensus 312 LasG~tdG~V~vwdlk~~g 330 (406)
T KOG2919|consen 312 LASGDTDGSVRVWDLKDLG 330 (406)
T ss_pred eeccCCCccEEEEecCCCC
Confidence 9999999999999998843
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.9e-17 Score=171.40 Aligned_cols=268 Identities=16% Similarity=0.253 Sum_probs=204.7
Q ss_pred eeeecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeee
Q 005352 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLT 286 (701)
Q Consensus 207 ~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~ 286 (701)
.++.+++..++.+ .+.++.|||.+.... .+.++||+..|.|++|+.||+.+|+|+.|..|.+|+-.-...+
T Consensus 18 ~afkPDGsqL~lA-Ag~rlliyD~ndG~l-------lqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L- 88 (1081)
T KOG1538|consen 18 IAFKPDGTQLILA-AGSRLLVYDTSDGTL-------LQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL- 88 (1081)
T ss_pred eEECCCCceEEEe-cCCEEEEEeCCCccc-------ccccccccceEEEEEEccCCceeccCCCceeEEEeccccccee-
Confidence 3556677676654 456788998654432 2578999999999999999999999999999999985432110
Q ss_pred eecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC
Q 005352 287 EVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN 366 (701)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~ 366 (701)
-..|.+.|.|+.|+|-.
T Consensus 89 ---------------------------------------------------------------kYSH~D~IQCMsFNP~~ 105 (1081)
T KOG1538|consen 89 ---------------------------------------------------------------KYSHNDAIQCMSFNPIT 105 (1081)
T ss_pred ---------------------------------------------------------------eeccCCeeeEeecCchH
Confidence 13599999999999988
Q ss_pred -eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEec---CCCcEEEE
Q 005352 367 -YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVD---IRQIVTAV 442 (701)
Q Consensus 367 -~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~---~~~~i~~i 442 (701)
.|++++-. ..-+|..... .+...+....|.+++|.. |+.+|+.|-.+|+|.|-+-...+.+.... ..++|.++
T Consensus 106 h~LasCsLs-dFglWS~~qK-~V~K~kss~R~~~CsWtn-DGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi 182 (1081)
T KOG1538|consen 106 HQLASCSLS-DFGLWSPEQK-SVSKHKSSSRIICCSWTN-DGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSI 182 (1081)
T ss_pred HHhhhcchh-hccccChhhh-hHHhhhhheeEEEeeecC-CCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEE
Confidence 88887754 4678876543 333444567889999998 99999999999999998765554444433 56889999
Q ss_pred EEeeCC-----CeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCC
Q 005352 443 CYRPDG-----QGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP 517 (701)
Q Consensus 443 ~~sp~g-----~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~ 517 (701)
+|+|.. ..+++.....++.+|.+....... .....-...|+++.+ ++.+++.|+.|+.+.+|.-.
T Consensus 183 ~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk---------~r~L~FdP~CisYf~-NGEy~LiGGsdk~L~~fTR~ 252 (1081)
T KOG1538|consen 183 CWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGK---------DRALNFDPCCISYFT-NGEYILLGGSDKQLSLFTRD 252 (1081)
T ss_pred EecCCCCCCccceEEEEeccceeEEEEecceeecc---------cccCCCCchhheecc-CCcEEEEccCCCceEEEeec
Confidence 999953 478888899999999987643321 222334457889999 89999999999999999754
Q ss_pred ccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 005352 518 NVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIG 560 (701)
Q Consensus 518 ~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~ 560 (701)
. ...-........|..++..|++++++.|+.||+|-.|++-.
T Consensus 253 G-vrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 253 G-VRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred C-eEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHH
Confidence 3 22222223678999999999999999999999999998743
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.6e-18 Score=156.41 Aligned_cols=245 Identities=18% Similarity=0.298 Sum_probs=177.4
Q ss_pred eeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEe
Q 005352 245 EIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSL 324 (701)
Q Consensus 245 ~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (701)
.+++|.+.|+++.|-.++ +|.+|..-|.|++|.+++...+..+..
T Consensus 9 vLRp~~~~v~s~~fqa~~-rL~sg~~~G~V~~w~lqt~r~~~~~r~---------------------------------- 53 (323)
T KOG0322|consen 9 VLRPHSSSVTSVLFQANE-RLMSGLSVGIVKMWVLQTERDLPLIRL---------------------------------- 53 (323)
T ss_pred Eeccccchheehhhccch-hhhcccccceEEEEEeecCccchhhhh----------------------------------
Confidence 467899999999998877 599999999999999988754333321
Q ss_pred eecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCCeEEEEECCCcEEEEECCCCe------------------
Q 005352 325 RRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDH------------------ 386 (701)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~------------------ 386 (701)
.|...|+.+..-|++.|.+-+.|..+.+|++.-..
T Consensus 54 ---------------------------~g~~~it~lq~~p~d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfS 106 (323)
T KOG0322|consen 54 ---------------------------FGRLFITNLQSIPNDSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFS 106 (323)
T ss_pred ---------------------------hccceeeceeecCCcchhhcCCCceEEEEEccCcceEEEeeeeccccccccce
Confidence 23445555555555555555555555555553311
Q ss_pred -------------------------------eeeeec-----CCCCeEEEEEeeCCCC--EEEEEEcCCcEEEEeCCCCc
Q 005352 387 -------------------------------CLRVFP-----HSNYVTCVHFNPVDDN--YFISGSIDGKVRIWAVLSCH 428 (701)
Q Consensus 387 -------------------------------~~~~~~-----h~~~V~~l~f~p~~~~--~l~sgs~dg~v~iwd~~~~~ 428 (701)
.+.... ..+.++|..+....+. ++++|..+|.|.+||+.++.
T Consensus 107 l~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~ 186 (323)
T KOG0322|consen 107 LVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGD 186 (323)
T ss_pred eccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCc
Confidence 111110 2345666664332333 46788899999999999863
Q ss_pred EE-----------EEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCC--eeeeeeeEEeecccCCCCCCeeEEEEe
Q 005352 429 VV-----------DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDN--HLELDAEICVHSKKKAPCKRITGFQFL 495 (701)
Q Consensus 429 ~~-----------~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~--~~~~~~~~~~~~~~~~~~~~i~~l~~~ 495 (701)
.+ ....|..+|.++.|.+.-..=++|+.+..+..|.+... .++....+++ ....+..+.+-
T Consensus 187 ~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~l------knpGv~gvrIR 260 (323)
T KOG0322|consen 187 KIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITL------KNPGVSGVRIR 260 (323)
T ss_pred eeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEe------cCCCccceEEc
Confidence 22 33457889999999987777788999999999998754 2322222222 23567888888
Q ss_pred cCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 005352 496 PQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNC 558 (701)
Q Consensus 496 p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~ 558 (701)
| |++.+++++.|+.||||..++........-|...|++++|+|+...+|.|+.|++|.+|++
T Consensus 261 p-D~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 261 P-DGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred c-CCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 9 8999999999999999999877666555558899999999999999999999999999986
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.3e-17 Score=160.55 Aligned_cols=225 Identities=18% Similarity=0.262 Sum_probs=171.0
Q ss_pred ccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC--eEEEEECCCcEEEEECCCCee-------eeee-cCCCCeEE
Q 005352 330 SACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHC-------LRVF-PHSNYVTC 399 (701)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~--~l~s~s~dg~I~iWd~~~~~~-------~~~~-~h~~~V~~ 399 (701)
+..++.+.....-..+..-.+.||+++|.+++|+|-+ .+++||.|.+|.||++..+.. +..+ .|...|.-
T Consensus 57 gaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~ 136 (472)
T KOG0303|consen 57 GAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGL 136 (472)
T ss_pred cceeecccccccccCCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEE
Confidence 3444444433332334555678999999999999966 899999999999999876533 2333 49999999
Q ss_pred EEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEee
Q 005352 400 VHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVH 479 (701)
Q Consensus 400 l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~ 479 (701)
++|+|.-.+.|++++.|.+|.+||+.+++.+..+.|...|.+++|+.+|.+|++++.|..|++||.++++...+.
T Consensus 137 V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~----- 211 (472)
T KOG0303|consen 137 VQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEG----- 211 (472)
T ss_pred EeecccchhhHhhccCCceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeec-----
Confidence 999998899999999999999999999998877889999999999999999999999999999999998875432
Q ss_pred cccCCCCCCeeEEEEecCCCCEEEEEEC---CCcEEEEeCCccceee--ecccCCCCeEEEEEecCCCEEEE-EeCCCcE
Q 005352 480 SKKKAPCKRITGFQFLPQDSSKVMVSCA---DSQVRILQGPNVIGKY--KGLRRSGNQLSACFTSDGKHIVS-AGEDSNV 553 (701)
Q Consensus 480 ~~~~~~~~~i~~l~~~p~~~~~l~~~s~---dg~I~iwd~~~~~~~~--~~~~~~~~v~~l~~s~dg~~l~s-gs~Dg~I 553 (701)
......+-....|.. ++.++.+|.. +.++-+||..+..... ........|.---|.+|...|.. |-.|+.|
T Consensus 212 --~~heG~k~~Raifl~-~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~I 288 (472)
T KOG0303|consen 212 --VAHEGAKPARAIFLA-SGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSI 288 (472)
T ss_pred --ccccCCCcceeEEec-cCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcce
Confidence 111223344555666 5665544433 7889999977554332 22234556666667888887754 5579999
Q ss_pred EEEeCCCCC
Q 005352 554 YMWNCIGHE 562 (701)
Q Consensus 554 ~iWd~~~~~ 562 (701)
+.|.+.+..
T Consensus 289 RYyEit~d~ 297 (472)
T KOG0303|consen 289 RYFEITNEP 297 (472)
T ss_pred EEEEecCCC
Confidence 999998766
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.2e-17 Score=156.68 Aligned_cols=276 Identities=19% Similarity=0.262 Sum_probs=197.8
Q ss_pred CeEEEEEecCC-eEEEEECCCcEEEEECCCC--------------eeeeeecCCCCeEEEEEe-------eCCCCEEEEE
Q 005352 356 EILDLSWSKNN-YLLSASIDKTVRLWRVGND--------------HCLRVFPHSNYVTCVHFN-------PVDDNYFISG 413 (701)
Q Consensus 356 ~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~--------------~~~~~~~h~~~V~~l~f~-------p~~~~~l~sg 413 (701)
-...+.|+|+| .|++-+.|..+.+|++... .....+.....|...+|- | +.+++++.
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP-~t~l~a~s 129 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQP-STNLFAVS 129 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCC-ccceeeec
Confidence 34567999999 9999999999999998432 111222245667777775 5 67899999
Q ss_pred EcCCcEEEEeCCCCcEEEE---ecCCC---cEEEEEEeeCCCeEEEEecCCcEEEEECC-CCeeeeeeeEEeecccCCCC
Q 005352 414 SIDGKVRIWAVLSCHVVDW---VDIRQ---IVTAVCYRPDGQGGIVGSMMGDCRFYNVS-DNHLELDAEICVHSKKKAPC 486 (701)
Q Consensus 414 s~dg~v~iwd~~~~~~~~~---~~~~~---~i~~i~~sp~g~~l~~gs~dg~v~i~d~~-~~~~~~~~~~~~~~~~~~~~ 486 (701)
+.+.-|++||.-+++.... .+|.. ...+++|+|||..|++|. ...|++||+. .+.. ..........+....
T Consensus 130 sr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~-c~vy~t~~~~k~gq~ 207 (406)
T KOG2919|consen 130 SRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRD-CPVYTTVTKGKFGQK 207 (406)
T ss_pred cccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCC-Ccchhhhhccccccc
Confidence 9999999999999986632 33333 356899999999998875 5889999994 3332 111112222244556
Q ss_pred CCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEe-CCCcEEEEeCCCCCCCC
Q 005352 487 KRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAG-EDSNVYMWNCIGHEEPA 565 (701)
Q Consensus 487 ~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs-~Dg~I~iWd~~~~~~~~ 565 (701)
+-|.+++|+|.+...+++++....+-||.-......+...+|.+.|+.++|.++|+.|++|+ .|-.|..||++.-..+.
T Consensus 208 giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv 287 (406)
T KOG2919|consen 208 GIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPV 287 (406)
T ss_pred ceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchh
Confidence 78899999998888999999999999988777677777778999999999999999999987 47789999998766432
Q ss_pred ccccccccccccccC--CceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCCcccCCCCccC
Q 005352 566 HDQAKTIRSLERFTT--NASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEKL 643 (701)
Q Consensus 566 ~~~~~~~~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~~~ 643 (701)
..++.... +..+ ..-..|. +..+++++.+|.|++|+..++
T Consensus 288 -------~~L~rhv~~TNQRI---------------------------~FDld~~----~~~LasG~tdG~V~vwdlk~~ 329 (406)
T KOG2919|consen 288 -------YALERHVGDTNQRI---------------------------LFDLDPK----GEILASGDTDGSVRVWDLKDL 329 (406)
T ss_pred -------hhhhhhccCccceE---------------------------EEecCCC----CceeeccCCCccEEEEecCCC
Confidence 22211111 0000 0122443 778888899999999998884
Q ss_pred CC-CccccccccchhhhhhhhhcccccccccCCCccEEEEec
Q 005352 644 PA-LSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAG 684 (701)
Q Consensus 644 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivTgg 684 (701)
-. +..+..+ ...|+.+++.+. ..+++|++
T Consensus 330 gn~~sv~~~~-----------sd~vNgvslnP~-mpilatss 359 (406)
T KOG2919|consen 330 GNEVSVTGNY-----------SDTVNGVSLNPI-MPILATSS 359 (406)
T ss_pred CCcccccccc-----------cccccceecCcc-cceeeecc
Confidence 43 4444333 356777777777 77777765
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.4e-15 Score=159.50 Aligned_cols=372 Identities=22% Similarity=0.342 Sum_probs=249.0
Q ss_pred eeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCe-eeeeecCCCC-CCceeEEeeccCCCcceeeeccccceeeE
Q 005352 245 EIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDE-RLTEVDIPEI-DPSCIYFTVNHLSELKPLFMDKEKISILK 322 (701)
Q Consensus 245 ~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (701)
.+..|...|.++.|.+.+..++.++.|+.+.+|+..... .+..+..... ....+... ..... ...
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~------------~~~ 126 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALS-SPDGN------------SIL 126 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEE-CCCcc------------eEE
Confidence 456799999999999999999999999999999998876 4444433221 11111111 11000 000
Q ss_pred EeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEEC-CCcEEEEECCCCeeeeeec-CCCCeEE
Q 005352 323 SLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASI-DKTVRLWRVGNDHCLRVFP-HSNYVTC 399 (701)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~-dg~I~iWd~~~~~~~~~~~-h~~~V~~ 399 (701)
......+..+..+.... .......+..|...|..++|+|++ .+++++. |+.+++|++..+..+..+. |...|.+
T Consensus 127 ~~~~~~d~~~~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 203 (466)
T COG2319 127 LASSSLDGTVKLWDLST---PGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSS 203 (466)
T ss_pred eccCCCCccEEEEEecC---CCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEE
Confidence 00011111121111111 125567788999999999999999 7888875 9999999999988877776 8999999
Q ss_pred EEEeeCCCC-EEEEEEcCCcEEEEeCCCCcEEE--EecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeE
Q 005352 400 VHFNPVDDN-YFISGSIDGKVRIWAVLSCHVVD--WVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEI 476 (701)
Q Consensus 400 l~f~p~~~~-~l~sgs~dg~v~iwd~~~~~~~~--~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~ 476 (701)
++|+| ++. ++++++.|+.|++||...+.... ...|.... ...|+|++..+++++.++.+++|++.......
T Consensus 204 ~~~~~-~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~---- 277 (466)
T COG2319 204 LAFSP-DGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLL---- 277 (466)
T ss_pred EEEcC-CcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEE----
Confidence 99998 776 55555899999999998777765 44455554 33899999899999999999999998765411
Q ss_pred EeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecc--cCCCCeEEEEEecCCCEEEEE-eCCCcE
Q 005352 477 CVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGL--RRSGNQLSACFTSDGKHIVSA-GEDSNV 553 (701)
Q Consensus 477 ~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~--~~~~~v~~l~~s~dg~~l~sg-s~Dg~I 553 (701)
... ..+...+.++.|.| ++..+++++.|+.+.+|+........... .|...+..+.|.+++..++.+ ..|+.+
T Consensus 278 ~~~---~~~~~~v~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 353 (466)
T COG2319 278 RTL---SGHSSSVLSVAFSP-DGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTI 353 (466)
T ss_pred EEE---ecCCccEEEEEECC-CCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcE
Confidence 111 33467899999999 67777778889899999887554443332 466678999994333566665 688999
Q ss_pred EEEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCcccc-ccCCC
Q 005352 554 YMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYV-FESFP 632 (701)
Q Consensus 554 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~-~~s~d 632 (701)
.+|++....... . .... . ....+.+.+ . . .++ .+..+
T Consensus 354 ~~~~~~~~~~~~--~------~~~~--~---------------------------~~~~~~~~~-~-~---~~~~~~~~~ 391 (466)
T COG2319 354 RLWDLRTGKPLK--T------LEGH--S---------------------------NVLSVSFSP-D-G---RVVSSGSTD 391 (466)
T ss_pred EeeecCCCceeE--E------ecCC--c---------------------------eEEEEEECC-C-C---CEEEEecCC
Confidence 999987764100 0 0000 0 011122222 1 0 111 24677
Q ss_pred CcccCCCCccCCCCccccccccchhhhhhhhhcccccccccCCCccEEEEecCCCeEeEEeecC
Q 005352 633 KGCATWPEEKLPALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFLNYG 696 (701)
Q Consensus 633 ~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivTgg~DG~Irvw~~~g 696 (701)
+.+.+|+.............. ..+....++.. +..+++++.++.+++|....
T Consensus 392 ~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 392 GTVRLWDLSTGSLLRNLDGHT-----------SRVTSLDFSPD-GKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred CceEEEecccCeeeeeccCCC-----------CcEEEEEECCC-CcEEEEecCCCcEEEEeccC
Confidence 888899988777655443220 23444456666 88899999999999998654
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.3e-16 Score=168.11 Aligned_cols=297 Identities=19% Similarity=0.311 Sum_probs=202.6
Q ss_pred eeeecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEcc--CCCEEEEEeCCCcEEEEEeecCee
Q 005352 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSP--DGQYLASAGDDGVVRLWQVVEDER 284 (701)
Q Consensus 207 ~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp--dg~~Lasgs~Dg~I~iWd~~~~~~ 284 (701)
..+++-...++++.....|+|||+.+... +.....+ ..-...|+.|++-. |..+|++|+.||.||||+-.....
T Consensus 1070 ~~~hpf~p~i~~ad~r~~i~vwd~e~~~~-l~~F~n~---~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1070 LKFHPFEPQIAAADDRERIRVWDWEKGRL-LNGFDNG---AFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW 1145 (1387)
T ss_pred eeecCCCceeEEcCCcceEEEEecccCce-eccccCC---CCCCCccceeeeecccchhheeeeccCceEEEeccccccc
Confidence 34555566677777778999999976543 2222111 02345789999865 456899999999999998533210
Q ss_pred eeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEec
Q 005352 285 LTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK 364 (701)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~ 364 (701)
.+..++..+..-. . .+.+..+.=.-+.|..
T Consensus 1146 -------------------------------~~~eLVTaw~~Ls----------------~---~~~~~r~~~~v~dWqQ 1175 (1387)
T KOG1517|consen 1146 -------------------------------KKPELVTAWSSLS----------------D---QLPGARGTGLVVDWQQ 1175 (1387)
T ss_pred -------------------------------CCceeEEeecccc----------------c---cCccCCCCCeeeehhh
Confidence 0000111100000 0 0011112224457877
Q ss_pred CC-eEEEEECCCcEEEEECCCCeeeeeec--CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcE----EEEecCCC
Q 005352 365 NN-YLLSASIDKTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHV----VDWVDIRQ 437 (701)
Q Consensus 365 ~~-~l~s~s~dg~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~----~~~~~~~~ 437 (701)
.. +|++++.-..|+|||.....++..+. ....|+++.-+-..++.|++|..||.|++||.+.... ..+..|..
T Consensus 1176 ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~ 1255 (1387)
T KOG1517|consen 1176 QSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHND 1255 (1387)
T ss_pred hCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCC
Confidence 65 88888889999999999998888776 5567888877665689999999999999999986532 35556666
Q ss_pred c--EEEEEEeeCCCe-EEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEE
Q 005352 438 I--VTAVCYRPDGQG-GIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRIL 514 (701)
Q Consensus 438 ~--i~~i~~sp~g~~-l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iw 514 (701)
. |..+.+.+.|-. |++|+.+|.|++||++.........+.. ........+++..++ ....+++|+. +.|.||
T Consensus 1256 ~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~---~~~yGs~lTal~VH~-hapiiAsGs~-q~ikIy 1330 (1387)
T KOG1517|consen 1256 VEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVA---HWEYGSALTALTVHE-HAPIIASGSA-QLIKIY 1330 (1387)
T ss_pred cccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeee---ccccCccceeeeecc-CCCeeeecCc-ceEEEE
Confidence 5 999999997755 9999999999999999852211111111 111123589999998 6888999888 999999
Q ss_pred eCCc-cceeeec-----ccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 515 QGPN-VIGKYKG-----LRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 515 d~~~-~~~~~~~-----~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
++.. ....++. ....+.+.+++|+|..-+||+|+.|..|.||....+.
T Consensus 1331 ~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1331 SLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred ecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 9762 1111111 1144678999999999999999999999999987654
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.4e-16 Score=168.60 Aligned_cols=269 Identities=17% Similarity=0.166 Sum_probs=195.1
Q ss_pred cceEEEEEccCccchhhhcccCceeccCCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEE
Q 005352 222 VQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSP-DGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYF 300 (701)
Q Consensus 222 d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~ 300 (701)
++.+.||+++... .....+ .-...|+|++|+| +..+||.|..+|.|.+||+..+.... +.
T Consensus 221 ~~~~~vW~~~~p~-~Pe~~~------~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~--------~s---- 281 (555)
T KOG1587|consen 221 DGVLLVWSLKNPN-TPELVL------ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTP--------PS---- 281 (555)
T ss_pred CceEEEEecCCCC-CceEEE------ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCC--------Cc----
Confidence 3479999987552 221111 2367899999999 46778888999999999998765211 00
Q ss_pred eeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC---eEEEEECCCcE
Q 005352 301 TVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN---YLLSASIDKTV 377 (701)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~---~l~s~s~dg~I 377 (701)
..-.....|..+++.+.|..+- -|++++.||.|
T Consensus 282 --------------------------------------------~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i 317 (555)
T KOG1587|consen 282 --------------------------------------------GLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSI 317 (555)
T ss_pred --------------------------------------------ccccccccCCcCeEEEEEeccCCCCceEEEecCCcE
Confidence 0111224699999999998764 59999999999
Q ss_pred EEEECCCCeee------ee-------ecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeC---CCCc------EEEEecC
Q 005352 378 RLWRVGNDHCL------RV-------FPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAV---LSCH------VVDWVDI 435 (701)
Q Consensus 378 ~iWd~~~~~~~------~~-------~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~---~~~~------~~~~~~~ 435 (701)
..|+++.-... .. +.....+++++|.+.+.+.|+.|+.+|.|.--+- .... ......|
T Consensus 318 ~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h 397 (555)
T KOG1587|consen 318 CSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITH 397 (555)
T ss_pred eeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccccccccccccccc
Confidence 99987644321 11 1134568999999989999999999999877332 2222 1244567
Q ss_pred CCcEEEEEEeeCCCeEEEEecCCcEEEEECC-CCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEE
Q 005352 436 RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVS-DNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRIL 514 (701)
Q Consensus 436 ~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~-~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iw 514 (701)
.++|+++.++|-+..++..+.|.+++||... ...... ....+...+++++|+|..+..++++..||.|.||
T Consensus 398 ~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~--------~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iW 469 (555)
T KOG1587|consen 398 IGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLL--------SLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIW 469 (555)
T ss_pred CcceEeeecCCCccceeeeeccceeEeccccCCCCcch--------hhhhccceeeeeEEcCcCceEEEEEcCCCceehh
Confidence 8999999999987766666669999999987 333221 1233445599999999989999999999999999
Q ss_pred eCCcc--ceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 005352 515 QGPNV--IGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGH 561 (701)
Q Consensus 515 d~~~~--~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~ 561 (701)
|+... .............+.+.|+++|+.|++|...|.+++|++...
T Consensus 470 DLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 470 DLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred hhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 98632 222222223556677888999999999999999999999654
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.2e-16 Score=147.69 Aligned_cols=274 Identities=16% Similarity=0.237 Sum_probs=194.9
Q ss_pred ccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccC-CCEEEEEeCC-------CcEEEEEeecCeeeeeecCCC
Q 005352 221 KVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPD-GQYLASAGDD-------GVVRLWQVVEDERLTEVDIPE 292 (701)
Q Consensus 221 ~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~Lasgs~D-------g~I~iWd~~~~~~~~~~~~~~ 292 (701)
.++.|.+-+++.....+. ...|..|.+.|+.|+-+|- .++|+|+-.+ -.+-||.+..........
T Consensus 38 ~dNqVhll~~d~e~s~l~----skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~--- 110 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELL----SKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSS--- 110 (370)
T ss_pred CcceeEEEEecCccchhh----hhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccc---
Confidence 357888888765544333 2346669999999999995 5567776442 236788876543110000
Q ss_pred CCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEc-CCccCeEEEEEecCC-eEEE
Q 005352 293 IDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFH-GHSGEILDLSWSKNN-YLLS 370 (701)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~I~~l~~s~~~-~l~s 370 (701)
. -..+..+. .+-+.|.|+.|.|++ .+++
T Consensus 111 --------------t------------------------------------lE~v~~Ldteavg~i~cvew~Pns~klas 140 (370)
T KOG1007|consen 111 --------------T------------------------------------LECVASLDTEAVGKINCVEWEPNSDKLAS 140 (370)
T ss_pred --------------h------------------------------------hhHhhcCCHHHhCceeeEEEcCCCCeeEE
Confidence 0 01122222 345689999999998 6655
Q ss_pred EECCCcEEEEECCCCee-eeeec------CCCCeEEEEEee-CCCCEEEEEEcCCcEEEEeCCCCcEEEEe--cCCCcEE
Q 005352 371 ASIDKTVRLWRVGNDHC-LRVFP------HSNYVTCVHFNP-VDDNYFISGSIDGKVRIWAVLSCHVVDWV--DIRQIVT 440 (701)
Q Consensus 371 ~s~dg~I~iWd~~~~~~-~~~~~------h~~~V~~l~f~p-~~~~~l~sgs~dg~v~iwd~~~~~~~~~~--~~~~~i~ 440 (701)
-. |..|.+|++..... +..+. +....++-+|+| .+++.+++.+ |+++..||+++......+ .|...+.
T Consensus 141 m~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vr 218 (370)
T KOG1007|consen 141 MD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIEDAHGQRVR 218 (370)
T ss_pred ec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEEEEEccchhhhcchhhhhcceee
Confidence 44 88999999988765 33332 566788889999 5677777665 899999999987665433 4677899
Q ss_pred EEEEeeCCC-eEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCcc
Q 005352 441 AVCYRPDGQ-GGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV 519 (701)
Q Consensus 441 ~i~~sp~g~-~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~ 519 (701)
.+.|+|+.+ +|++++.||.|+|||.+..+... .....|...+.++.|+|...+++++|+.|..|.+|.....
T Consensus 219 dlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv-------~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~sv 291 (370)
T KOG1007|consen 219 DLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPV-------QELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSV 291 (370)
T ss_pred eccCCCCceEEEEEcCCCccEEEEeccCCCccc-------cccCCCceEEEEEEecCccceEEEecCCCceeEEEecccc
Confidence 999999876 56778899999999999876432 1245677899999999988999999999999999964210
Q ss_pred c--------------------ee---------eecccCCCCeEEEEEecCCCE-EEEEeCCCcEEEEeCCC
Q 005352 520 I--------------------GK---------YKGLRRSGNQLSACFTSDGKH-IVSAGEDSNVYMWNCIG 560 (701)
Q Consensus 520 ~--------------------~~---------~~~~~~~~~v~~l~~s~dg~~-l~sgs~Dg~I~iWd~~~ 560 (701)
. .. .....|...|++++|+.-..+ +|+-+.||++.|=++..
T Consensus 292 SSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 292 SSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred ccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence 0 00 011237889999999986655 56779999999877643
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1e-16 Score=166.00 Aligned_cols=232 Identities=19% Similarity=0.308 Sum_probs=177.2
Q ss_pred cEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCcc
Q 005352 252 SILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESA 331 (701)
Q Consensus 252 ~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (701)
.|..++|.|||..|+.+.. ..+.+||...+.
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~------------------------------------------------ 44 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGT------------------------------------------------ 44 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCCcc------------------------------------------------
Confidence 7999999999998887764 468999998874
Q ss_pred EEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEE
Q 005352 332 CVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYF 410 (701)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l 410 (701)
.++++++|++.|.+++|+.+| .+++|+.|+.|.+|+-.- +-+-.+.|.+.|.|+.|+| -...|
T Consensus 45 --------------llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl-EG~LkYSH~D~IQCMsFNP-~~h~L 108 (1081)
T KOG1538|consen 45 --------------LLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL-EGILKYSHNDAIQCMSFNP-ITHQL 108 (1081)
T ss_pred --------------cccccccccceEEEEEEccCCceeccCCCceeEEEecccc-cceeeeccCCeeeEeecCc-hHHHh
Confidence 456778999999999999999 999999999999998533 3344567999999999999 77888
Q ss_pred EEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCee
Q 005352 411 ISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRIT 490 (701)
Q Consensus 411 ~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~ 490 (701)
++++.. ..-+|......+.+ ......+.+++|..||++++.|..+|+|.+-+-...... ..........+|.
T Consensus 109 asCsLs-dFglWS~~qK~V~K-~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~------~I~Rpgg~Nspiw 180 (1081)
T KOG1538|consen 109 ASCSLS-DFGLWSPEQKSVSK-HKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKV------KIERPGGSNSPIW 180 (1081)
T ss_pred hhcchh-hccccChhhhhHHh-hhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcce------EEeCCCCCCCCce
Confidence 888754 47789876544332 233456889999999999999999999998765432211 1223456778999
Q ss_pred EEEEecCCC----CEEEEEECCCcEEEEeCCc-cceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 005352 491 GFQFLPQDS----SKVMVSCADSQVRILQGPN-VIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNC 558 (701)
Q Consensus 491 ~l~~~p~~~----~~l~~~s~dg~I~iwd~~~-~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~ 558 (701)
+++|+|..+ ..+++.....++.+|.+.. .+.+-+ ...-...|+++.++|.|++.|+.|+.+++|.-
T Consensus 181 si~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r--~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR 251 (1081)
T KOG1538|consen 181 SICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDR--ALNFDPCCISYFTNGEYILLGGSDKQLSLFTR 251 (1081)
T ss_pred EEEecCCCCCCccceEEEEeccceeEEEEecceeecccc--cCCCCchhheeccCCcEEEEccCCCceEEEee
Confidence 999999543 4667777777777776542 111111 12334578889999999999999999999963
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.6e-17 Score=167.39 Aligned_cols=254 Identities=19% Similarity=0.212 Sum_probs=184.1
Q ss_pred eeecCccccccccccceEEEEEccCccc-hhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeee
Q 005352 208 RVRLNEEDAMFCSKVQRVKVYHCKKRSK-ELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLT 286 (701)
Q Consensus 208 ~~~~~~~~~~~~~~d~~v~vw~~~~~~~-~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~ 286 (701)
.+.+....+++++.++.+++|.+.+..+ ........-++++|.++|.|+++.+++.++.+||.||+|+.|++..+.-
T Consensus 301 ~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~d-- 378 (577)
T KOG0642|consen 301 AFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQD-- 378 (577)
T ss_pred hcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCC--
Confidence 4556677889999999999999944221 1223344567899999999999999999999999999999999863220
Q ss_pred eecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC
Q 005352 287 EVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN 366 (701)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~ 366 (701)
.+... ++ ......+.||.+.|+.+++|+..
T Consensus 379 p~ds~--------------------------------------------dp------~vl~~~l~Ghtdavw~l~~s~~~ 408 (577)
T KOG0642|consen 379 PDDSY--------------------------------------------DP------SVLSGTLLGHTDAVWLLALSSTK 408 (577)
T ss_pred ccccc--------------------------------------------Cc------chhccceeccccceeeeeecccc
Confidence 00000 00 02345678999999999999987
Q ss_pred -eEEEEECCCcEEEEECCCCeeeeeec---CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecC-------
Q 005352 367 -YLLSASIDKTVRLWRVGNDHCLRVFP---HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDI------- 435 (701)
Q Consensus 367 -~l~s~s~dg~I~iWd~~~~~~~~~~~---h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~------- 435 (701)
.|++++.||+|++|+...... .+|. ..+..+.+.+-.......++...-+.--++++...+.+.++..
T Consensus 409 ~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~ 487 (577)
T KOG0642|consen 409 DRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPR 487 (577)
T ss_pred cceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCccc
Confidence 999999999999999877766 4454 4456677777542223333333333334444444443333321
Q ss_pred -CCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEE
Q 005352 436 -RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRIL 514 (701)
Q Consensus 436 -~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iw 514 (701)
...+..+.++|.+...+++..|+.|+++|..++.+... ...|...++++++.| ++.+|++++.|+.+++|
T Consensus 488 ~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s--------~~a~~~svtslai~~-ng~~l~s~s~d~sv~l~ 558 (577)
T KOG0642|consen 488 RYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHS--------MVAHKDSVTSLAIDP-NGPYLMSGSHDGSVRLW 558 (577)
T ss_pred ccCccceEEecCCCCeeEecccCCceecccccccccchh--------eeeccceecceeecC-CCceEEeecCCceeehh
Confidence 13477889999999999999999999999998876543 344557799999999 89999999999999999
Q ss_pred eCCccceee
Q 005352 515 QGPNVIGKY 523 (701)
Q Consensus 515 d~~~~~~~~ 523 (701)
.+.......
T Consensus 559 kld~k~~~~ 567 (577)
T KOG0642|consen 559 KLDVKTCVL 567 (577)
T ss_pred hccchheee
Confidence 876544443
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.7e-17 Score=181.31 Aligned_cols=233 Identities=15% Similarity=0.203 Sum_probs=182.1
Q ss_pred ccccccccceEEEEEccCc--cchhhhcccCceeccCCCcEEEEEEccCCC-EEEEEeCCCcEEEEEeecCeeeeeecCC
Q 005352 215 DAMFCSKVQRVKVYHCKKR--SKELSALYKGQEIQAHDGSILTMKFSPDGQ-YLASAGDDGVVRLWQVVEDERLTEVDIP 291 (701)
Q Consensus 215 ~~~~~~~d~~v~vw~~~~~--~~~~~~~~~~~~l~~H~~~I~~l~fspdg~-~Lasgs~Dg~I~iWd~~~~~~~~~~~~~ 291 (701)
.++.|..||.|.+|+..+. ..+.. .......|++.|..+.|++... +||+|+.||.|.|||+.+.+......
T Consensus 82 lIaGG~edG~I~ly~p~~~~~~~~~~---~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~-- 156 (1049)
T KOG0307|consen 82 LIAGGLEDGNIVLYDPASIIANASEE---VLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG-- 156 (1049)
T ss_pred eeeccccCCceEEecchhhccCcchH---HHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC--
Confidence 3555889999999998653 22211 1234567999999999999755 99999999999999998754211110
Q ss_pred CCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC--eEE
Q 005352 292 EIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLL 369 (701)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~--~l~ 369 (701)
-....+.|.+|+|+..- .|+
T Consensus 157 ----------------------------------------------------------~~~~~~eI~~lsWNrkvqhILA 178 (1049)
T KOG0307|consen 157 ----------------------------------------------------------SQAPPSEIKCLSWNRKVSHILA 178 (1049)
T ss_pred ----------------------------------------------------------CCCCcccceEeccchhhhHHhh
Confidence 01245789999999865 889
Q ss_pred EEECCCcEEEEECCCCeeeeeecCC---CCeEEEEEeeCCCCEEEEEEcCC---cEEEEeCCCCc--EEEEecCCCcEEE
Q 005352 370 SASIDKTVRLWRVGNDHCLRVFPHS---NYVTCVHFNPVDDNYFISGSIDG---KVRIWAVLSCH--VVDWVDIRQIVTA 441 (701)
Q Consensus 370 s~s~dg~I~iWd~~~~~~~~~~~h~---~~V~~l~f~p~~~~~l~sgs~dg---~v~iwd~~~~~--~~~~~~~~~~i~~ 441 (701)
+++.+|.+.|||++..+.+..+... ..+..++|+|.+...+++++.|. .|.+||+|... ......|...|.+
T Consensus 179 S~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~Gils 258 (1049)
T KOG0307|consen 179 SGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILS 258 (1049)
T ss_pred ccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceee
Confidence 9999999999999999888777622 34889999997777888887664 59999998543 2234588999999
Q ss_pred EEEeeCC-CeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCc
Q 005352 442 VCYRPDG-QGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN 518 (701)
Q Consensus 442 i~~sp~g-~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~ 518 (701)
+.|++.+ .++++++.|+.|.+|+.++++.... .......+..+.|+|.+...+++++.||.|.||.+..
T Consensus 259 lsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~--------~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~ 328 (1049)
T KOG0307|consen 259 LSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGE--------LPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQG 328 (1049)
T ss_pred eccCCCCchhhhcccCCCCeeEecCCCceEeee--------cCCCCcceeeeeecCCCcchhhhheeccceeeeeeec
Confidence 9999966 8999999999999999999875432 2234578999999999889999999999999998763
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.5e-15 Score=155.98 Aligned_cols=275 Identities=14% Similarity=0.194 Sum_probs=175.3
Q ss_pred ccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEe-CCCcEEEEEeecCeeeeeecCCCCCCce
Q 005352 219 CSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAG-DDGVVRLWQVVEDERLTEVDIPEIDPSC 297 (701)
Q Consensus 219 ~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs-~Dg~I~iWd~~~~~~~~~~~~~~~~~~~ 297 (701)
...++.|.+|++... ..+. ..+.+. +.+....|.++|++++|+.++ .++.|.+|++.....+...
T Consensus 8 ~~~~~~I~~~~~~~~-g~l~---~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~--------- 73 (330)
T PRK11028 8 SPESQQIHVWNLNHE-GALT---LLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFA--------- 73 (330)
T ss_pred cCCCCCEEEEEECCC-Ccee---eeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEe---------
Confidence 456899999998532 1111 112232 345677899999999987664 4788999998632111100
Q ss_pred eEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEE-CCC
Q 005352 298 IYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSAS-IDK 375 (701)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s-~dg 375 (701)
.... .......++++|++ +|++++ .++
T Consensus 74 --------------------------------------------------~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~ 102 (330)
T PRK11028 74 --------------------------------------------------AESP-LPGSPTHISTDHQGRFLFSASYNAN 102 (330)
T ss_pred --------------------------------------------------eeec-CCCCceEEEECCCCCEEEEEEcCCC
Confidence 0000 11235679999999 666655 488
Q ss_pred cEEEEECCCC----eeeeeecCCCCeEEEEEeeCCCCEEEEE-EcCCcEEEEeCCCCcEEE-------EecCCCcEEEEE
Q 005352 376 TVRLWRVGND----HCLRVFPHSNYVTCVHFNPVDDNYFISG-SIDGKVRIWAVLSCHVVD-------WVDIRQIVTAVC 443 (701)
Q Consensus 376 ~I~iWd~~~~----~~~~~~~h~~~V~~l~f~p~~~~~l~sg-s~dg~v~iwd~~~~~~~~-------~~~~~~~i~~i~ 443 (701)
.|.+|++.+. +.+..+.+...+.+++++| ++++++++ ..++.|.+||+.+...+. ..........+.
T Consensus 103 ~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p-~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~ 181 (330)
T PRK11028 103 CVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDP-DNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMV 181 (330)
T ss_pred eEEEEEECCCCCCCCceeeccCCCcccEeEeCC-CCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEE
Confidence 9999999743 2333333445577889999 88777554 456999999997632221 112234567899
Q ss_pred EeeCCCeEEEEec-CCcEEEEECCC--CeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEE-CCCcEEEEeCCcc
Q 005352 444 YRPDGQGGIVGSM-MGDCRFYNVSD--NHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSC-ADSQVRILQGPNV 519 (701)
Q Consensus 444 ~sp~g~~l~~gs~-dg~v~i~d~~~--~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s-~dg~I~iwd~~~~ 519 (701)
|+|+|++++++.. ++.|.+|++.. +.......+...............+.++| ++++++++. .++.|.+|++...
T Consensus 182 ~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~p-dg~~lyv~~~~~~~I~v~~i~~~ 260 (330)
T PRK11028 182 FHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITP-DGRHLYACDRTASLISVFSVSED 260 (330)
T ss_pred ECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECC-CCCEEEEecCCCCeEEEEEEeCC
Confidence 9999999988876 89999999974 33322222211111111122334688999 677777775 4789999997532
Q ss_pred ce--eeecc-cCCCCeEEEEEecCCCEEEEEeC-CCcEEEEeCCC
Q 005352 520 IG--KYKGL-RRSGNQLSACFTSDGKHIVSAGE-DSNVYMWNCIG 560 (701)
Q Consensus 520 ~~--~~~~~-~~~~~v~~l~~s~dg~~l~sgs~-Dg~I~iWd~~~ 560 (701)
.. .+... ........+.|+|+|++|++++. ++.|.+|+++.
T Consensus 261 ~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 261 GSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred CCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence 21 11111 11124557899999999998775 89999998864
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.6e-17 Score=176.12 Aligned_cols=247 Identities=22% Similarity=0.312 Sum_probs=192.3
Q ss_pred hhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeecc
Q 005352 236 ELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDK 315 (701)
Q Consensus 236 ~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (701)
-.+.......|.+|..+|+|+.|...|.|++||+.|..++||..++..+
T Consensus 176 mvqkmk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~------------------------------- 224 (1113)
T KOG0644|consen 176 MVQKMKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARC------------------------------- 224 (1113)
T ss_pred HHHHHHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhh-------------------------------
Confidence 3344455567889999999999999999999999999999999877643
Q ss_pred ccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-C
Q 005352 316 EKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-H 393 (701)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h 393 (701)
+....||.+.|++++.+.++ +++++|.|..|++|.+.++.++..+. |
T Consensus 225 -------------------------------lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrgh 273 (1113)
T KOG0644|consen 225 -------------------------------LASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGH 273 (1113)
T ss_pred -------------------------------hccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhcc
Confidence 34557999999999999988 99999999999999999999998875 9
Q ss_pred CCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEE-----EecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCC
Q 005352 394 SNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD-----WVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDN 468 (701)
Q Consensus 394 ~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~-----~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~ 468 (701)
++.|++|+|+| +.+.+.||++++||.+-...+. .......+-++.|..++..+++|+.++.-..|.+...
T Consensus 274 tgavtaiafsP-----~~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l 348 (1113)
T KOG0644|consen 274 TGAVTAIAFSP-----RASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQL 348 (1113)
T ss_pred ccceeeeccCc-----cccCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHh
Confidence 99999999999 3377889999999998221111 1223455777888888999999999999988887543
Q ss_pred eeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCC-EEEEE
Q 005352 469 HLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGK-HIVSA 547 (701)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~-~l~sg 547 (701)
.... ..+.-+..+.+-..+.+++-.+-.+++|++.+.........|...+..+.++|-.. ...++
T Consensus 349 ~~~~--------------~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msa 414 (1113)
T KOG0644|consen 349 AWRS--------------NLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSA 414 (1113)
T ss_pred hhhc--------------cceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhc
Confidence 2111 11122222222335666677788899999987765555566889999999999654 45689
Q ss_pred eCCCcEEEEeCCCCCC
Q 005352 548 GEDSNVYMWNCIGHEE 563 (701)
Q Consensus 548 s~Dg~I~iWd~~~~~~ 563 (701)
+.||.+.|||+-.+..
T Consensus 415 g~dgst~iwdi~eg~p 430 (1113)
T KOG0644|consen 415 GYDGSTIIWDIWEGIP 430 (1113)
T ss_pred cCCCceEeeecccCCc
Confidence 9999999999988764
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.3e-16 Score=160.49 Aligned_cols=257 Identities=21% Similarity=0.293 Sum_probs=197.7
Q ss_pred ceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEE
Q 005352 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (701)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (701)
..|..|.|.|..|.|...|..|++|+.|..|.+||+..+.....+
T Consensus 136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f----------------------------------- 180 (559)
T KOG1334|consen 136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSF----------------------------------- 180 (559)
T ss_pred hcccCCCCccceeeecccCceeeccCccceEEeehhhccCccccc-----------------------------------
Confidence 457789999999999999999999999999999999887533222
Q ss_pred eeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC---eEEEEECCCcEEEEECCCC-eee---eeecCCCC
Q 005352 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN---YLLSASIDKTVRLWRVGND-HCL---RVFPHSNY 396 (701)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~---~l~s~s~dg~I~iWd~~~~-~~~---~~~~h~~~ 396 (701)
..||...|..-+|.|.. .+++++.||.|++=.+... .+. ...+|.++
T Consensus 181 --------------------------~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~ 234 (559)
T KOG1334|consen 181 --------------------------ESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGP 234 (559)
T ss_pred --------------------------ccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccccCc
Confidence 25788888888888864 8999999999999876543 332 22349999
Q ss_pred eEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEe----cCCC---cEEEEEEeeCCC-eEEEEecCCcEEEEECCCC
Q 005352 397 VTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV----DIRQ---IVTAVCYRPDGQ-GGIVGSMMGDCRFYNVSDN 468 (701)
Q Consensus 397 V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~----~~~~---~i~~i~~sp~g~-~l~~gs~dg~v~i~d~~~~ 468 (701)
|.-++.-|.....|.+++.|+.+.-+|++........ .... ....|+..|... .+++|+.|..+++||.+.-
T Consensus 235 vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~ 314 (559)
T KOG1334|consen 235 VHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRI 314 (559)
T ss_pred cceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccch
Confidence 9999999978888999999999999999876533211 1222 467889999654 8999999999999998754
Q ss_pred eee----eeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCC--------------c-cceeeecccCC
Q 005352 469 HLE----LDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP--------------N-VIGKYKGLRRS 529 (701)
Q Consensus 469 ~~~----~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~--------------~-~~~~~~~~~~~ 529 (701)
... ....++.+.........|++++|+. ++.-++++-.|-.|+++... . ..+.|+++...
T Consensus 315 ~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh-~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~ 393 (559)
T KOG1334|consen 315 DKEENNGVLDKFCPHHLVEDDPVNITGLVYSH-DGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNS 393 (559)
T ss_pred hhccccchhhhcCCccccccCcccceeEEecC-CccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccc
Confidence 322 1122333333334556799999998 67778888889999999532 1 12347888877
Q ss_pred CCeEEEEE-ecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 530 GNQLSACF-TSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 530 ~~v~~l~~-s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
..|..+-| -|...|+++|+.=|.|.||+-.+++
T Consensus 394 ~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~e 427 (559)
T KOG1334|consen 394 RTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGE 427 (559)
T ss_pred cccceeeeccCccceEEecCccceEEEEecchhH
Confidence 78888875 5788999999999999999988776
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.4e-15 Score=135.79 Aligned_cols=281 Identities=19% Similarity=0.243 Sum_probs=189.5
Q ss_pred eeecCccccccccccceEEEEEccCcc---chhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCee
Q 005352 208 RVRLNEEDAMFCSKVQRVKVYHCKKRS---KELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDER 284 (701)
Q Consensus 208 ~~~~~~~~~~~~~~d~~v~vw~~~~~~---~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~ 284 (701)
++++..+.+++|..+|+|.|..++... .+.......-..++|.++|+.|+|. ..+|++|+. |.|+-|...+...
T Consensus 17 a~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw~W~E~~e 93 (325)
T KOG0649|consen 17 AISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGD-GLVYGWEWNEEEE 93 (325)
T ss_pred hhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeeccC-ceEEEeeehhhhh
Confidence 566777888999999999999875322 1222222223458999999999998 347888875 9999998876432
Q ss_pred eeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEec
Q 005352 285 LTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK 364 (701)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~ 364 (701)
....+ ..|.+. .|.++-.-.-..|+++...|
T Consensus 94 s~~~K------------------------------------------------~lwe~~-~P~~~~~~evPeINam~ldP 124 (325)
T KOG0649|consen 94 SLATK------------------------------------------------RLWEVK-IPMQVDAVEVPEINAMWLDP 124 (325)
T ss_pred hccch------------------------------------------------hhhhhc-CccccCcccCCccceeEecc
Confidence 10000 000000 11111111234688888888
Q ss_pred CC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCC------
Q 005352 365 NN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIR------ 436 (701)
Q Consensus 365 ~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~------ 436 (701)
.. -++.++.|+.++-||+++++....+. |+++|.++.--. ....+++|+.||++|+||+++++.+..+...
T Consensus 125 ~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~-~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~l 203 (325)
T KOG0649|consen 125 SENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRN-ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLL 203 (325)
T ss_pred CCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecc-cCcceeecCCCccEEEEeccccceeEEeccccChhhc
Confidence 66 66777799999999999999999997 999999998854 5668999999999999999999888665421
Q ss_pred -----CcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcE
Q 005352 437 -----QIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQV 511 (701)
Q Consensus 437 -----~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I 511 (701)
..|.+++. +..++++|+. ..+.+|.++.........+. .++..+.|. ...+++++..+.|
T Consensus 204 Rp~~g~wigala~--~edWlvCGgG-p~lslwhLrsse~t~vfpip---------a~v~~v~F~---~d~vl~~G~g~~v 268 (325)
T KOG0649|consen 204 RPDWGKWIGALAV--NEDWLVCGGG-PKLSLWHLRSSESTCVFPIP---------ARVHLVDFV---DDCVLIGGEGNHV 268 (325)
T ss_pred CcccCceeEEEec--cCceEEecCC-CceeEEeccCCCceEEEecc---------cceeEeeee---cceEEEeccccce
Confidence 23555554 4558877764 67999999987765544332 345566664 4688888888899
Q ss_pred EEEeCCccceeeecccCCCCeEEEEEecC-CCEEEEEeCCCcEEEEe
Q 005352 512 RILQGPNVIGKYKGLRRSGNQLSACFTSD-GKHIVSAGEDSNVYMWN 557 (701)
Q Consensus 512 ~iwd~~~~~~~~~~~~~~~~v~~l~~s~d-g~~l~sgs~Dg~I~iWd 557 (701)
.-|.+.......... .....++.+|+.. -++|-.++....+.|+.
T Consensus 269 ~~~~l~Gvl~a~ip~-~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 269 QSYTLNGVLQANIPV-ESTACYSASWQTSPIKFISIAGFSNKLHILK 314 (325)
T ss_pred eeeeeccEEEEeccC-CccceeeecccCCceEEEEecccceeeeeee
Confidence 999876544333222 2233455555433 34565667777777764
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.1e-14 Score=157.09 Aligned_cols=333 Identities=16% Similarity=0.243 Sum_probs=230.1
Q ss_pred ccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCcee
Q 005352 219 CSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCI 298 (701)
Q Consensus 219 ~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~ 298 (701)
...+..+.+|...+..+..... ..-..|.-.++|.++||+++++|+|..||.|.+|.--..+.
T Consensus 177 i~~~~~~~~~~v~~~~~~~~~~---~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~-------------- 239 (792)
T KOG1963|consen 177 IVHMCKIHIYFVPKHTKHTSSR---DITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSD-------------- 239 (792)
T ss_pred EEEeeeEEEEEecccceeeccc---hhhhhhcccceeEEeccccceEEEeccCCcEEEEecccccc--------------
Confidence 4456667888876644221111 11234777899999999999999999999999997432110
Q ss_pred EEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcE
Q 005352 299 YFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTV 377 (701)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I 377 (701)
.....+.++-|...|.+++|+++| +|++|+..+.+
T Consensus 240 --------------------------------------------~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VL 275 (792)
T KOG1963|consen 240 --------------------------------------------DSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVL 275 (792)
T ss_pred --------------------------------------------ccccceEEEecccccceeEEecCCceEeecccceEE
Confidence 002345567799999999999999 99999999999
Q ss_pred EEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEe------------cCCCcEEEEEEe
Q 005352 378 RLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV------------DIRQIVTAVCYR 445 (701)
Q Consensus 378 ~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~------------~~~~~i~~i~~s 445 (701)
.+|.+.+++....-...++|..+.++| ++++.+....|+.|.+....+......+ ...+-.+.++++
T Consensus 276 v~Wq~~T~~kqfLPRLgs~I~~i~vS~-ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~id 354 (792)
T KOG1963|consen 276 VLWQLETGKKQFLPRLGSPILHIVVSP-DSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSID 354 (792)
T ss_pred EEEeecCCCcccccccCCeeEEEEEcC-CCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEc
Confidence 999999998433334789999999999 9999999999999999877554332211 123457789999
Q ss_pred eCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCC---CCCCeeEEEEecCCCCEEEEEEC--------C--CcEE
Q 005352 446 PDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKA---PCKRITGFQFLPQDSSKVMVSCA--------D--SQVR 512 (701)
Q Consensus 446 p~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~---~~~~i~~l~~~p~~~~~l~~~s~--------d--g~I~ 512 (701)
|.-+.++..+..|.|.+||+-+................. ..-.++.++.+- .+.++++.-. | -.++
T Consensus 355 pr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~-~gs~maT~E~~~d~~~~~~~e~~LK 433 (792)
T KOG1963|consen 355 PRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSR-FGSWMATLEARIDKFNFFDGEVSLK 433 (792)
T ss_pred CCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhc-cceEEEEeeeeehhhhccCceEEEE
Confidence 977788888999999999999888776665554443322 233456666666 3777777532 3 3467
Q ss_pred EEeCCccceeeec-----ccCCCCeEEEEEecC-C-CEEEEEeCCCcEEEEeCCCCCCCCccccccccccccccCCceEE
Q 005352 513 ILQGPNVIGKYKG-----LRRSGNQLSACFTSD-G-KHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIA 585 (701)
Q Consensus 513 iwd~~~~~~~~~~-----~~~~~~v~~l~~s~d-g-~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a 585 (701)
+|-.......+.. ..|...+...++.+. . ...+|++.||.++||-+.+.++..... .
T Consensus 434 FW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~--s-------------- 497 (792)
T KOG1963|consen 434 FWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKS--S-------------- 497 (792)
T ss_pred EEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCc--c--------------
Confidence 7876543333332 336666666666542 2 379999999999999997766422110 0
Q ss_pred ecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCCcccCCCCccCCC
Q 005352 586 IPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEKLPA 645 (701)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~~~~~ 645 (701)
.|. +.. ....+..++..++|+-++ .+++.+.+..+.+|+..+...
T Consensus 498 -~W~------c~~---i~sy~k~~i~a~~fs~dG-----slla~s~~~~Itiwd~~~~~~ 542 (792)
T KOG1963|consen 498 -NWT------CKA---IGSYHKTPITALCFSQDG-----SLLAVSFDDTITIWDYDTKNE 542 (792)
T ss_pred -ceE------Eee---eeccccCcccchhhcCCC-----cEEEEecCCEEEEecCCChhh
Confidence 111 110 011235567778888873 456678999999999887433
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.3e-15 Score=142.17 Aligned_cols=204 Identities=18% Similarity=0.301 Sum_probs=158.3
Q ss_pred CCccCeEEEEEecCC------eEEEEECCCcEEEEECCCCe--e--eeee------cCCCCeEEEEEeeCCCCEEEEEEc
Q 005352 352 GHSGEILDLSWSKNN------YLLSASIDKTVRLWRVGNDH--C--LRVF------PHSNYVTCVHFNPVDDNYFISGSI 415 (701)
Q Consensus 352 ~h~~~I~~l~~s~~~------~l~s~s~dg~I~iWd~~~~~--~--~~~~------~h~~~V~~l~f~p~~~~~l~sgs~ 415 (701)
.|.-+++.+.|.|+. +|+|++ -.+|+|.+.... . ...+ .+..++++..|+..+.+++.+.+.
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi 171 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI 171 (364)
T ss_pred CCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence 478899999999975 344433 479999987421 1 1111 267899999999999999999999
Q ss_pred CCcEEEEeCCCCcE----EEEecCCCcEEEEEEeeCC-CeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCee
Q 005352 416 DGKVRIWAVLSCHV----VDWVDIRQIVTAVCYRPDG-QGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRIT 490 (701)
Q Consensus 416 dg~v~iwd~~~~~~----~~~~~~~~~i~~i~~sp~g-~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~ 490 (701)
|-+..|||+.++.. .+++.|...|..|+|...+ +.|++.+.||.+++||++...... .+.. ......+..
T Consensus 172 DTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHST----IIYE-~p~~~~pLl 246 (364)
T KOG0290|consen 172 DTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHST----IIYE-DPSPSTPLL 246 (364)
T ss_pred cCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccce----EEec-CCCCCCcce
Confidence 99999999998733 3678899999999999855 478889999999999998754321 1111 122256788
Q ss_pred EEEEecCCCCEEEEEECC-CcEEEEeCCccc-eeeecccCCCCeEEEEEecC-CCEEEEEeCCCcEEEEeCCCCC
Q 005352 491 GFQFLPQDSSKVMVSCAD-SQVRILQGPNVI-GKYKGLRRSGNQLSACFTSD-GKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 491 ~l~~~p~~~~~l~~~s~d-g~I~iwd~~~~~-~~~~~~~~~~~v~~l~~s~d-g~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
.++|++++.+++++-..| ..|.|.|++... .......|.+.|+.++|.|. ..+|+|++.|..+.|||+...-
T Consensus 247 RLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~ 321 (364)
T KOG0290|consen 247 RLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMP 321 (364)
T ss_pred eeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccccc
Confidence 899999999999887664 579999998543 34455569999999999995 4799999999999999998754
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.6e-16 Score=160.34 Aligned_cols=253 Identities=17% Similarity=0.254 Sum_probs=181.7
Q ss_pred ccCcceeeecCcccccc--ccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEcc-CCCEEEEEeCCCcEEEEE
Q 005352 202 KQGEGERVRLNEEDAMF--CSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSP-DGQYLASAGDDGVVRLWQ 278 (701)
Q Consensus 202 ~~~~~~~~~~~~~~~~~--~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~I~iWd 278 (701)
..++.+.+..+....++ .+..|.|-||++++..+-......+ | -....|+.+.|.| |...||.|+.||.|++|.
T Consensus 580 ~PgEsnGfcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~--l-~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr 656 (1012)
T KOG1445|consen 580 LPGESNGFCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPG--L-FNGTLVTDLHWDPFDDERLAVATDDGQINLWR 656 (1012)
T ss_pred CCCccCceeeccceEEEEecCCCceEEEEEcCCCCCCCcccccc--c-ccCceeeecccCCCChHHeeecccCceEEEEE
Confidence 34667777778777765 6778999999998765443332222 1 1456799999999 678999999999999999
Q ss_pred eecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeE
Q 005352 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEIL 358 (701)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~ 358 (701)
+..+..... ...|-..+.+|...|+
T Consensus 657 ~~a~gl~e~-------------------------------------------------------~~tPe~~lt~h~eKI~ 681 (1012)
T KOG1445|consen 657 LTANGLPEN-------------------------------------------------------EMTPEKILTIHGEKIT 681 (1012)
T ss_pred eccCCCCcc-------------------------------------------------------cCCcceeeecccceEE
Confidence 987642110 1145567889999999
Q ss_pred EEEEecCC--eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEec-
Q 005352 359 DLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVD- 434 (701)
Q Consensus 359 ~l~~s~~~--~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~- 434 (701)
.|.|+|-- .|++++.|-+|++||+.+.+....+. |.+.|..++|+| +++.+++.+.||+|++|..++++.-...+
T Consensus 682 slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSp-dGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~ 760 (1012)
T KOG1445|consen 682 SLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSP-DGRRIATVCKDGTLRVYEPRSREQPVYEGK 760 (1012)
T ss_pred EEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECC-CCcceeeeecCceEEEeCCCCCCCccccCC
Confidence 99999965 99999999999999999988766665 999999999999 99999999999999999998875432211
Q ss_pred --CCCcEEEEEEeeCCCeEEEEecC----CcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECC
Q 005352 435 --IRQIVTAVCYRPDGQGGIVGSMM----GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD 508 (701)
Q Consensus 435 --~~~~i~~i~~sp~g~~l~~gs~d----g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~d 508 (701)
....-..|.|.-+|+++++.+.| ..|.+||..+-.... +......... .+.--.+.++.+-++++|-.|
T Consensus 761 gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~p---l~t~~lDvap--s~LvP~YD~Ds~~lfltGKGD 835 (1012)
T KOG1445|consen 761 GPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRP---LYTQVLDVAP--SPLVPHYDYDSNVLFLTGKGD 835 (1012)
T ss_pred CCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCc---ceeeeecccC--ccccccccCCCceEEEecCCC
Confidence 11233457788899999987765 458888876543211 0111100000 011112344456677888889
Q ss_pred CcEEEEeCCc
Q 005352 509 SQVRILQGPN 518 (701)
Q Consensus 509 g~I~iwd~~~ 518 (701)
..|++|.+-.
T Consensus 836 ~~v~~yEv~~ 845 (1012)
T KOG1445|consen 836 RFVNMYEVIY 845 (1012)
T ss_pred ceEEEEEecC
Confidence 9999998753
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.1e-14 Score=152.58 Aligned_cols=266 Identities=28% Similarity=0.476 Sum_probs=199.8
Q ss_pred ccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeC-CCcEEEEEeecCeeeeeecCCCCCCce
Q 005352 219 CSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGD-DGVVRLWQVVEDERLTEVDIPEIDPSC 297 (701)
Q Consensus 219 ~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~-Dg~I~iWd~~~~~~~~~~~~~~~~~~~ 297 (701)
...++.+++|+... .......+..|...|..++|+|++.++++++. |+.+++|++...
T Consensus 130 ~~~d~~~~~~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 188 (466)
T COG2319 130 SSLDGTVKLWDLST------PGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG--------------- 188 (466)
T ss_pred CCCCccEEEEEecC------CCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCC---------------
Confidence 34488999998764 11222457789999999999999999999986 999999998763
Q ss_pred eEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC--eEEEEECCC
Q 005352 298 IYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLSASIDK 375 (701)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~--~l~s~s~dg 375 (701)
+.+..+.+|...|.+++|+|++ .+++++.|+
T Consensus 189 -----------------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~ 221 (466)
T COG2319 189 -----------------------------------------------KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDG 221 (466)
T ss_pred -----------------------------------------------ceEEeeccCCCceEEEEEcCCcceEEEEecCCC
Confidence 3445566799999999999988 444449999
Q ss_pred cEEEEECCCCeeee-eec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcE-E-EEecCCCcEEEEEEeeCCCeE
Q 005352 376 TVRLWRVGNDHCLR-VFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHV-V-DWVDIRQIVTAVCYRPDGQGG 451 (701)
Q Consensus 376 ~I~iWd~~~~~~~~-~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~-~-~~~~~~~~i~~i~~sp~g~~l 451 (701)
.|++||...+..+. .+. |...+ ...|+| ++.++++++.|+.+++|++..... . ....|...+.++.|.|++..+
T Consensus 222 ~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 299 (466)
T COG2319 222 TIRLWDLSTGKLLRSTLSGHSDSV-VSSFSP-DGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLL 299 (466)
T ss_pred cEEEEECCCCcEEeeecCCCCcce-eEeECC-CCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEE
Confidence 99999998777777 344 66664 338998 778899999999999999987664 3 334678899999999988888
Q ss_pred EEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEE-ECCCcEEEEeCCccceeeecccCCC
Q 005352 452 IVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVS-CADSQVRILQGPNVIGKYKGLRRSG 530 (701)
Q Consensus 452 ~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~-s~dg~I~iwd~~~~~~~~~~~~~~~ 530 (701)
++++.++.+.+|++.......... ...+...+..+.+ +.++..++.+ ..|+.+.+|+..... .........
T Consensus 300 ~~~~~d~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~ 371 (466)
T COG2319 300 ASGSSDGTVRLWDLETGKLLSSLT------LKGHEGPVSSLSF-SPDGSLLVSGGSDDGTIRLWDLRTGK-PLKTLEGHS 371 (466)
T ss_pred EEeeCCCcEEEEEcCCCceEEEee------ecccCCceEEEEE-CCCCCEEEEeecCCCcEEeeecCCCc-eeEEecCCc
Confidence 889999889999888766543222 2234446888888 5333555555 678999999988666 222222222
Q ss_pred CeEEEEEecCCCEEEE-EeCCCcEEEEeCCCCCC
Q 005352 531 NQLSACFTSDGKHIVS-AGEDSNVYMWNCIGHEE 563 (701)
Q Consensus 531 ~v~~l~~s~dg~~l~s-gs~Dg~I~iWd~~~~~~ 563 (701)
.+..+.+.+ ...++. +..++.+.+|+......
T Consensus 372 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 404 (466)
T COG2319 372 NVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSL 404 (466)
T ss_pred eEEEEEECC-CCCEEEEecCCCceEEEecccCee
Confidence 388899988 544444 68899999999887763
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.6e-15 Score=162.34 Aligned_cols=256 Identities=14% Similarity=0.206 Sum_probs=176.7
Q ss_pred eeccCCCcEEEEEEccC-CCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEE
Q 005352 245 EIQAHDGSILTMKFSPD-GQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (701)
Q Consensus 245 ~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (701)
.++.|...|..++.++. +.+++|||.||+|++||......-...
T Consensus 1043 hL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s----------------------------------- 1087 (1431)
T KOG1240|consen 1043 HLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGS----------------------------------- 1087 (1431)
T ss_pred hhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcce-----------------------------------
Confidence 46679999999998775 599999999999999998764311000
Q ss_pred eeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCe-------eeeeec--C
Q 005352 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDH-------CLRVFP--H 393 (701)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~-------~~~~~~--h 393 (701)
-+...++......+.++...+++ .++.++.||.|++.++...+ +..... .
T Consensus 1088 --------------------~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~ 1147 (1431)
T KOG1240|consen 1088 --------------------ARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKK 1147 (1431)
T ss_pred --------------------eeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccC
Confidence 01122333356788999999988 99999999999999987621 111111 2
Q ss_pred CCC-eEEEEEeeCCCC-EEEEEEcCCcEEEEeCCCCcEE---EEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCC
Q 005352 394 SNY-VTCVHFNPVDDN-YFISGSIDGKVRIWAVLSCHVV---DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDN 468 (701)
Q Consensus 394 ~~~-V~~l~f~p~~~~-~l~sgs~dg~v~iwd~~~~~~~---~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~ 468 (701)
.+. |..-+|...... .++.+...+.|..||+++.... +.....+.|++++.+|.++++++|+..|.+.+||++=+
T Consensus 1148 ~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~ 1227 (1431)
T KOG1240|consen 1148 DGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFR 1227 (1431)
T ss_pred CCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecC
Confidence 233 334445443344 6778888899999999987644 23334578999999999999999999999999999865
Q ss_pred eeeeeeeEEeecccCCCCCCeeEEEEecCCC--CEEEEEE--CCCcEEEEeCCccceeeeccc-----------------
Q 005352 469 HLELDAEICVHSKKKAPCKRITGFQFLPQDS--SKVMVSC--ADSQVRILQGPNVIGKYKGLR----------------- 527 (701)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~--~~l~~~s--~dg~I~iwd~~~~~~~~~~~~----------------- 527 (701)
.... .....+..+|..+..+|..+ ...++++ ..+.|.+|++.+.........
T Consensus 1228 ~~i~-------sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~ 1300 (1431)
T KOG1240|consen 1228 VPIL-------SWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDAR 1300 (1431)
T ss_pred ceee-------cccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCC
Confidence 4432 23344456788888877544 4444444 478899999875443332211
Q ss_pred --CCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 528 --RSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 528 --~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
+.-....+++..-+.++++|+.|..|+.||...++
T Consensus 1301 kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1301 KPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPE 1337 (1431)
T ss_pred CCCcccceeeecccCCceeeecCCccceeeccCCCcc
Confidence 11122334444456789999999999999988876
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.4e-15 Score=148.60 Aligned_cols=293 Identities=11% Similarity=0.123 Sum_probs=205.7
Q ss_pred cccCcceeee--cCccccccccccceEEEEEccCccchhhhcccCcee--ccCCCcEEEEEEccCCCEEEEEeCCCcEEE
Q 005352 201 DKQGEGERVR--LNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEI--QAHDGSILTMKFSPDGQYLASAGDDGVVRL 276 (701)
Q Consensus 201 ~~~~~~~~~~--~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l--~~H~~~I~~l~fspdg~~Lasgs~Dg~I~i 276 (701)
.|-+.++++. -++..++.|+.|..++||+..... .....+.-.+ ..|...|.|++|....+.|.+|+.+++|.+
T Consensus 54 ~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~--~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~ 131 (609)
T KOG4227|consen 54 EHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELM--VRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIK 131 (609)
T ss_pred hhccccceeeeccCCeEEeecCCcceeeeechHHHH--hhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEe
Confidence 4566666654 456788999999999999875321 1111111112 347789999999999999999999999999
Q ss_pred EEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccC
Q 005352 277 WQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGE 356 (701)
Q Consensus 277 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 356 (701)
.|+++.+.+..+. -....+.
T Consensus 132 HDiEt~qsi~V~~------------------------------------------------------------~~~~~~~ 151 (609)
T KOG4227|consen 132 HDIETKQSIYVAN------------------------------------------------------------ENNNRGD 151 (609)
T ss_pred eecccceeeeeec------------------------------------------------------------ccCcccc
Confidence 9998876332111 0123458
Q ss_pred eEEEEEecCC-eEEEEECCCcEEEEECCCCe-e---eeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEE-
Q 005352 357 ILDLSWSKNN-YLLSASIDKTVRLWRVGNDH-C---LRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV- 430 (701)
Q Consensus 357 I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~-~---~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~- 430 (701)
|+.+..+|.. .|++.+.++.|.+||++..+ . +..-........+.|+|....+|++.+..+-+.+||++..+..
T Consensus 152 VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~ 231 (609)
T KOG4227|consen 152 VYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPV 231 (609)
T ss_pred eeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchH
Confidence 9999999976 99999999999999998765 2 2222355677889999988999999999999999999876432
Q ss_pred -E---EecCCC---cEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEE
Q 005352 431 -D---WVDIRQ---IVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVM 503 (701)
Q Consensus 431 -~---~~~~~~---~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~ 503 (701)
. ...... .-..+.|+|+|+.|++--....-.+||+-...+..-.. ............|.+++|.. ...++
T Consensus 232 ~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~-D~N~~GY~N~~T~KS~~F~~--D~~v~ 308 (609)
T KOG4227|consen 232 YQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKS-DHNPNGYCNIKTIKSMTFID--DYTVA 308 (609)
T ss_pred HhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEec-cCCCCcceeeeeeeeeeeec--ceeee
Confidence 1 112222 23678899999988877665556678887654432110 00000111234567778875 35599
Q ss_pred EEECCCcEEEEeCCccc-----------------------eeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 005352 504 VSCADSQVRILQGPNVI-----------------------GKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNC 558 (701)
Q Consensus 504 ~~s~dg~I~iwd~~~~~-----------------------~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~ 558 (701)
+|+.+-.|++|.+.... ......+|..-++.+.|+|...+|++.+-...++||.-
T Consensus 309 tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 309 TGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred ccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheecccc
Confidence 99999999999864210 01112347888899999999999999999999999963
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.4e-15 Score=147.26 Aligned_cols=293 Identities=18% Similarity=0.261 Sum_probs=196.0
Q ss_pred CCcEEEEEEccCCC-EEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecC
Q 005352 250 DGSILTMKFSPDGQ-YLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTS 328 (701)
Q Consensus 250 ~~~I~~l~fspdg~-~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (701)
..+|..+.|.++.. .|||||.|..|+||.+..+..-. +...+
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~------------------------------~~~~V------- 55 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGG------------------------------GDMKV------- 55 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCC------------------------------CceeE-------
Confidence 35899999999766 99999999999999998764110 00000
Q ss_pred CccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECC--------C-----C---eeeeee
Q 005352 329 ESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVG--------N-----D---HCLRVF 391 (701)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~--------~-----~---~~~~~~ 391 (701)
+.+..+..|...|+++.|+|+| .|++|+.+|.|.+|... + . ...+.+
T Consensus 56 ----------------~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~l 119 (434)
T KOG1009|consen 56 ----------------EYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVL 119 (434)
T ss_pred ----------------EEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEe
Confidence 2345677899999999999999 99999999999999765 2 1 111122
Q ss_pred -cCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEE-ecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCe
Q 005352 392 -PHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDW-VDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNH 469 (701)
Q Consensus 392 -~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~-~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~ 469 (701)
.|...|..++|+| +++++++++.|+.+++||+..+++... .+|...+..++|.|-++++++-+.|...+.+.+...+
T Consensus 120 r~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~ 198 (434)
T KOG1009|consen 120 RGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQ 198 (434)
T ss_pred cccccchhhhhccC-CCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeee
Confidence 2889999999999 999999999999999999999998854 4688899999999999999999999988888877655
Q ss_pred eeeeeeEE-eeccc--------------CCCCCCeeEEEEecCCCCEEEEEEC----CC-----cEEEEeCCcccee-ee
Q 005352 470 LELDAEIC-VHSKK--------------KAPCKRITGFQFLPQDSSKVMVSCA----DS-----QVRILQGPNVIGK-YK 524 (701)
Q Consensus 470 ~~~~~~~~-~~~~~--------------~~~~~~i~~l~~~p~~~~~l~~~s~----dg-----~I~iwd~~~~~~~-~~ 524 (701)
........ ..... .....-...++|.| ++.++++... .+ ..++|+.+..... ..
T Consensus 199 ~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTP-dG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~ 277 (434)
T KOG1009|consen 199 VIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTP-DGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAAR 277 (434)
T ss_pred eeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCC-CCcEEEcccceeeeCCceeeceeEeeccccccCceee
Confidence 44332211 11100 00112234567888 6777776543 22 3455654432221 12
Q ss_pred cccCCCCeEEEEEec------------------CCCEEEEEeCCCcEEEEeCCCCCCCCccccccccccccccCCceEEe
Q 005352 525 GLRRSGNQLSACFTS------------------DGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAI 586 (701)
Q Consensus 525 ~~~~~~~v~~l~~s~------------------dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 586 (701)
......+...+.|+| -+..++.++. ..|+|||.++.... ..+
T Consensus 278 lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~-~svyvydtq~~~P~--------~~v----------- 337 (434)
T KOG1009|consen 278 LPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATK-NSVYVYDTQTLEPL--------AVV----------- 337 (434)
T ss_pred cCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeec-ceEEEeccccccce--------EEE-----------
Confidence 222334444444443 2234455554 47999997765421 001
Q ss_pred cCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCCcccC
Q 005352 587 PWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCAT 637 (701)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~ 637 (701)
...+...++.++|+++ +..++..|.||-..+
T Consensus 338 ----------------~nihy~~iTDiaws~d----g~~l~vSS~DGyCS~ 368 (434)
T KOG1009|consen 338 ----------------DNIHYSAITDIAWSDD----GSVLLVSSTDGFCSL 368 (434)
T ss_pred ----------------eeeeeeeecceeecCC----CcEEEEeccCCceEE
Confidence 1122445667788886 566666777777653
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.68 E-value=9.1e-15 Score=159.25 Aligned_cols=295 Identities=17% Similarity=0.188 Sum_probs=200.2
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCC
Q 005352 250 DGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSE 329 (701)
Q Consensus 250 ~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (701)
..+-..+.|+|-...++++...-.|+|||.+.++.+..|....
T Consensus 1064 ~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~------------------------------------- 1106 (1387)
T KOG1517|consen 1064 NQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGA------------------------------------- 1106 (1387)
T ss_pred CCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCC-------------------------------------
Confidence 3356779999999999999877899999999887654443211
Q ss_pred ccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC---eEEEEECCCcEEEEECC-C----Ceeeeeec--------C
Q 005352 330 SACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN---YLLSASIDKTVRLWRVG-N----DHCLRVFP--------H 393 (701)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~---~l~s~s~dg~I~iWd~~-~----~~~~~~~~--------h 393 (701)
.....|+.+.+-... ++++|+.||.|+||+-- . .+.+..+. .
T Consensus 1107 ----------------------~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~ 1164 (1387)
T KOG1517|consen 1107 ----------------------FPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGA 1164 (1387)
T ss_pred ----------------------CCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccC
Confidence 123567888876543 99999999999999642 2 23333221 1
Q ss_pred CCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEec--CCCcEEEEEEe-eCCCeEEEEecCCcEEEEECCCCee
Q 005352 394 SNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVD--IRQIVTAVCYR-PDGQGGIVGSMMGDCRFYNVSDNHL 470 (701)
Q Consensus 394 ~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~--~~~~i~~i~~s-p~g~~l~~gs~dg~v~i~d~~~~~~ 470 (701)
.+.-.-+.|....+ +|++++.-..|+|||....+++.-+. ....|+++.-+ +.|+.+++|..||.|++||.+....
T Consensus 1165 r~~~~v~dWqQ~~G-~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ 1243 (1387)
T KOG1517|consen 1165 RGTGLVVDWQQQSG-HLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPP 1243 (1387)
T ss_pred CCCCeeeehhhhCC-eEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCc
Confidence 11123456777444 55555557889999999888775443 34557777544 3579999999999999999987543
Q ss_pred eeeeeEEeecccCCCCCC--eeEEEEecCCCCEEEEEECCCcEEEEeCCc-cceee-ecccC---CCCeEEEEEecCCCE
Q 005352 471 ELDAEICVHSKKKAPCKR--ITGFQFLPQDSSKVMVSCADSQVRILQGPN-VIGKY-KGLRR---SGNQLSACFTSDGKH 543 (701)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~--i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~-~~~~~-~~~~~---~~~v~~l~~s~dg~~ 543 (701)
.. .......|... |..+.+.+++-..|++|+.+|.|++||++. ....+ ....| .+..+++..+++...
T Consensus 1244 ds-----~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapi 1318 (1387)
T KOG1517|consen 1244 DS-----LVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPI 1318 (1387)
T ss_pred cc-----cceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCe
Confidence 21 11112223333 999999885556799999999999999986 22222 22112 235899999999999
Q ss_pred EEEEeCCCcEEEEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccC
Q 005352 544 IVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLG 623 (701)
Q Consensus 544 l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~ 623 (701)
||+|+. +.|+||++...+... ++....| ......++..++|+|. .
T Consensus 1319 iAsGs~-q~ikIy~~~G~~l~~------~k~n~~F------------------------~~q~~gs~scL~FHP~----~ 1363 (1387)
T KOG1517|consen 1319 IASGSA-QLIKIYSLSGEQLNI------IKYNPGF------------------------MGQRIGSVSCLAFHPH----R 1363 (1387)
T ss_pred eeecCc-ceEEEEecChhhhcc------cccCccc------------------------ccCcCCCcceeeecch----h
Confidence 999998 999999998766321 1111111 1111234577889997 4
Q ss_pred ccccccCCCCcccCCCCccCC
Q 005352 624 QEYVFESFPKGCATWPEEKLP 644 (701)
Q Consensus 624 ~~~~~~s~d~~~~~W~~~~~~ 644 (701)
-.++.++.|..|.++..++..
T Consensus 1364 ~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1364 LLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred HhhhhccCCceEEEeecCCcC
Confidence 456677889999998877654
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.7e-15 Score=141.07 Aligned_cols=241 Identities=18% Similarity=0.290 Sum_probs=179.8
Q ss_pred CCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecC
Q 005352 249 HDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTS 328 (701)
Q Consensus 249 H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (701)
-..+|+|.+|++|++.+|.+-....|.||.....+.-
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w------------------------------------------- 45 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLW------------------------------------------- 45 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCc-------------------------------------------
Confidence 4578999999999999999999999999997665311
Q ss_pred CccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCC-Cee---eeeecCCCCeEEEEEe
Q 005352 329 ESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGN-DHC---LRVFPHSNYVTCVHFN 403 (701)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~-~~~---~~~~~h~~~V~~l~f~ 403 (701)
++.+++..|...|+.|+|+|.. .|++++.|..-++|.... ++- +..+.++..++++.|+
T Consensus 46 ----------------~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~Ws 109 (361)
T KOG1523|consen 46 ----------------EPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWS 109 (361)
T ss_pred ----------------eeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeec
Confidence 5678889999999999999998 999999999999999843 332 3334589999999999
Q ss_pred eCCCCEEEEEEcCCcEEEEeCCCCcEE-----EEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeee-----
Q 005352 404 PVDDNYFISGSIDGKVRIWAVLSCHVV-----DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELD----- 473 (701)
Q Consensus 404 p~~~~~l~sgs~dg~v~iwd~~~~~~~-----~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~----- 473 (701)
| .++.|++|+....|.||-.....-- ....++..|+++.|+|++-+|++|+.|+.+++|..--......
T Consensus 110 P-~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~p 188 (361)
T KOG1523|consen 110 P-KENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTP 188 (361)
T ss_pred C-cCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCC
Confidence 9 9999999999999999977654322 2234578899999999999999999999999997532111000
Q ss_pred --eeEEe---ecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeee-cccCCCCeEEEEEecCCCEEEEE
Q 005352 474 --AEICV---HSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYK-GLRRSGNQLSACFTSDGKHIVSA 547 (701)
Q Consensus 474 --~~~~~---~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~-~~~~~~~v~~l~~s~dg~~l~sg 547 (701)
.++.. ........+.+..+.|+| ++..|+-.+.|+.+.+-|.....+... .....-+..++.|-.+. .++.+
T Consensus 189 Wgsk~PFG~lm~E~~~~ggwvh~v~fs~-sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~-~vv~a 266 (361)
T KOG1523|consen 189 WGSKMPFGQLMSEASSSGGWVHGVLFSP-SGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISEN-SVVAA 266 (361)
T ss_pred CccCCcHHHHHHhhccCCCceeeeEeCC-CCCEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecCC-ceeec
Confidence 00000 001114567899999999 799999999999999999765432221 11133566777775443 34555
Q ss_pred eCCC
Q 005352 548 GEDS 551 (701)
Q Consensus 548 s~Dg 551 (701)
+.|.
T Consensus 267 g~~c 270 (361)
T KOG1523|consen 267 GYDC 270 (361)
T ss_pred CCCC
Confidence 5553
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.67 E-value=9.4e-15 Score=138.09 Aligned_cols=262 Identities=16% Similarity=0.238 Sum_probs=186.1
Q ss_pred cceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCC-----CEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCc
Q 005352 222 VQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDG-----QYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPS 296 (701)
Q Consensus 222 d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg-----~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~ 296 (701)
.+.|.|-.++....++.... . -.|.-+++.+-|.|+. .+|||.+. .+|+|.+...+.......
T Consensus 72 ~Nkvqiv~ld~~s~e~~~~a---~-fd~~YP~tK~~wiPd~~g~~pdlLATs~D--~LRlWri~~ee~~~~~~~------ 139 (364)
T KOG0290|consen 72 NNKVQIVQLDEDSGELVEDA---N-FDHPYPVTKLMWIPDSKGVYPDLLATSSD--FLRLWRIGDEESRVELQS------ 139 (364)
T ss_pred CCeeEEEEEccCCCceeccC---C-CCCCCCccceEecCCccccCcchhhcccC--eEEEEeccCcCCceehhh------
Confidence 46777777764443332211 1 2488899999999975 35777764 799999875321111000
Q ss_pred eeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC--eEEEEECC
Q 005352 297 CIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLSASID 374 (701)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~--~l~s~s~d 374 (701)
. + ...+-..+..+++++.|+.-. ++.++|-|
T Consensus 140 ---~----------L----------------------------------~~~kns~~~aPlTSFDWne~dp~~igtSSiD 172 (364)
T KOG0290|consen 140 ---V----------L----------------------------------NNNKNSEFCAPLTSFDWNEVDPNLIGTSSID 172 (364)
T ss_pred ---h----------h----------------------------------ccCcccccCCcccccccccCCcceeEeeccc
Confidence 0 0 000113366789999998865 89999999
Q ss_pred CcEEEEECCCCe----eeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEe---c-CCCcEEEEEEee
Q 005352 375 KTVRLWRVGNDH----CLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV---D-IRQIVTAVCYRP 446 (701)
Q Consensus 375 g~I~iWd~~~~~----~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~---~-~~~~i~~i~~sp 446 (701)
-+..|||++++. ..+.+.|...|..|+|.....+.|++.+.||.||+||++...--.++ . ...+...++|++
T Consensus 173 TTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnk 252 (364)
T KOG0290|consen 173 TTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNK 252 (364)
T ss_pred CeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCc
Confidence 999999999973 34456699999999999755678999999999999999976533322 1 246788899988
Q ss_pred C-CCeEEEEec-CCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccce---
Q 005352 447 D-GQGGIVGSM-MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIG--- 521 (701)
Q Consensus 447 ~-g~~l~~gs~-dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~--- 521 (701)
. -+++++-.. ...|.+.|++..... ......|...|++++|.|....+|++++.|.++.|||+.....
T Consensus 253 qDpnymATf~~dS~~V~iLDiR~P~tp-------va~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~ 325 (364)
T KOG0290|consen 253 QDPNYMATFAMDSNKVVILDIRVPCTP-------VARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENG 325 (364)
T ss_pred CCchHHhhhhcCCceEEEEEecCCCcc-------eehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCC
Confidence 4 456666444 456999999875432 1234567889999999999999999999999999999875443
Q ss_pred --eeecccCCCCeEEEEEec-CCCEEEEEeC
Q 005352 522 --KYKGLRRSGNQLSACFTS-DGKHIVSAGE 549 (701)
Q Consensus 522 --~~~~~~~~~~v~~l~~s~-dg~~l~sgs~ 549 (701)
........+.|+.+.|++ ...+|+.+..
T Consensus 326 ~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 326 EDPILAYTAGGEVNQIQWSSSQPDWIAICFG 356 (364)
T ss_pred CCchhhhhccceeeeeeecccCCCEEEEEec
Confidence 111223567899999996 5567777754
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.2e-15 Score=139.64 Aligned_cols=236 Identities=19% Similarity=0.243 Sum_probs=171.2
Q ss_pred eEEEEEccCccch--hhhcccCceec-cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeee-eeecCCCCCCceeE
Q 005352 224 RVKVYHCKKRSKE--LSALYKGQEIQ-AHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERL-TEVDIPEIDPSCIY 299 (701)
Q Consensus 224 ~v~vw~~~~~~~~--~~~~~~~~~l~-~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~-~~~~~~~~~~~~~~ 299 (701)
.+.||.+.+.... ...+.....|. .|-+.|.|+.|.|++..||+-. |..|.+|++.++..+ ..+..+.
T Consensus 94 ~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~------- 165 (370)
T KOG1007|consen 94 GAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSE------- 165 (370)
T ss_pred eEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccc-------
Confidence 4689998653322 11122222232 4667999999999999999887 789999999887531 1111100
Q ss_pred EeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecC--CeEEEEECCCcE
Q 005352 300 FTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN--NYLLSASIDKTV 377 (701)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~--~~l~s~s~dg~I 377 (701)
-.+|....++-+|+|. +.-+....|+++
T Consensus 166 --------------------------------------------------s~e~~~~ftsg~WspHHdgnqv~tt~d~tl 195 (370)
T KOG1007|consen 166 --------------------------------------------------SAEMRHSFTSGAWSPHHDGNQVATTSDSTL 195 (370)
T ss_pred --------------------------------------------------cccccceecccccCCCCccceEEEeCCCcE
Confidence 0125566778899983 455555678999
Q ss_pred EEEECCCCeeeeeec--CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCc--EEEEecCCCcEEEEEEeeC-CCeEE
Q 005352 378 RLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH--VVDWVDIRQIVTAVCYRPD-GQGGI 452 (701)
Q Consensus 378 ~iWd~~~~~~~~~~~--h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~--~~~~~~~~~~i~~i~~sp~-g~~l~ 452 (701)
..||+++.++...+. |...|..+.|+|....+|++|+.||.|+|||.++.+ +....+|...|.++.|+|. .+.++
T Consensus 196 ~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiL 275 (370)
T KOG1007|consen 196 QFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLIL 275 (370)
T ss_pred EEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEE
Confidence 999999998887776 888999999999666789999999999999998754 3366788999999999994 56888
Q ss_pred EEecCCcEEEEECCCCeeeeee---------------------eEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcE
Q 005352 453 VGSMMGDCRFYNVSDNHLELDA---------------------EICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQV 511 (701)
Q Consensus 453 ~gs~dg~v~i~d~~~~~~~~~~---------------------~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I 511 (701)
+|+.|..|.+|....-.-.... +-........|...|.+++|+..++-++++-+.||.+
T Consensus 276 s~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRv 355 (370)
T KOG1007|consen 276 SGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRV 355 (370)
T ss_pred ecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceE
Confidence 9999999999976432110000 0001112345678899999999899999999999999
Q ss_pred EEEeCC
Q 005352 512 RILQGP 517 (701)
Q Consensus 512 ~iwd~~ 517 (701)
.|=.+.
T Consensus 356 iIs~V~ 361 (370)
T KOG1007|consen 356 IISSVP 361 (370)
T ss_pred EeecCC
Confidence 886654
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=9.1e-16 Score=156.08 Aligned_cols=242 Identities=21% Similarity=0.352 Sum_probs=164.2
Q ss_pred hcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccc
Q 005352 239 ALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKI 318 (701)
Q Consensus 239 ~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (701)
.+-..++|.||+|.|.|++|+.+|.+||+|+.|-.+.|||...-+.
T Consensus 39 rL~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kl---------------------------------- 84 (758)
T KOG1310|consen 39 RLDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKL---------------------------------- 84 (758)
T ss_pred hcchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcce----------------------------------
Confidence 3444578999999999999999999999999999999999875433
Q ss_pred eeeEEeeecCCccEEEcCCccccccCCCeEEE-cCCccCeEEEEEecCC---eEEEEECCCcEEEEECCCC---------
Q 005352 319 SILKSLRRTSESACVVFPPKVFRILEKPLHEF-HGHSGEILDLSWSKNN---YLLSASIDKTVRLWRVGND--------- 385 (701)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~I~~l~~s~~~---~l~s~s~dg~I~iWd~~~~--------- 385 (701)
++.+ .||...|.+++|-|.. ++++|+.|..|+++|+...
T Consensus 85 ----------------------------lhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~ 136 (758)
T KOG1310|consen 85 ----------------------------LHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGM 136 (758)
T ss_pred ----------------------------eeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCc
Confidence 2222 5899999999999953 9999999999999999752
Q ss_pred -eeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEE-----------EecCCCcEEEEEEeeC-CCeE
Q 005352 386 -HCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD-----------WVDIRQIVTAVCYRPD-GQGG 451 (701)
Q Consensus 386 -~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~-----------~~~~~~~i~~i~~sp~-g~~l 451 (701)
.....+. |...|..|+..|...+.|.+++.||+|+-||++...... .....-...++.++|. ..+|
T Consensus 137 ~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~l 216 (758)
T KOG1310|consen 137 EETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYL 216 (758)
T ss_pred cchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceE
Confidence 2223333 888999999999556999999999999999998743221 1111234678889984 4688
Q ss_pred EEEecCCcEEEEECCCCeeeeeeeEEeecc-cCCCCCCeeEEE-EecCCCCEEEEEECCCcEEEEeCCccceeeecccCC
Q 005352 452 IVGSMMGDCRFYNVSDNHLELDAEICVHSK-KKAPCKRITGFQ-FLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRS 529 (701)
Q Consensus 452 ~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~-~~~~~~~i~~l~-~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~ 529 (701)
++|+.+-..++||.+........ ... .........++. |+|. .+ ...+|.+. ...
T Consensus 217 aVGgsdpfarLYD~Rr~lks~~s----~~~~~~~pp~~~~cv~yf~p~---hl--kn~~gn~~--------------~~~ 273 (758)
T KOG1310|consen 217 AVGGSDPFARLYDRRRVLKSFRS----DGTMNTCPPKDCRCVRYFSPG---HL--KNSQGNLD--------------RYI 273 (758)
T ss_pred EecCCCchhhhhhhhhhccCCCC----CccccCCCCcccchhheecCc---cc--cCcccccc--------------cce
Confidence 99999999999997543211100 000 000111111221 2231 00 00011000 011
Q ss_pred CCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCCCC
Q 005352 530 GNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPA 565 (701)
Q Consensus 530 ~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~~ 565 (701)
..++-+.|+|+|.-|+..-.--.||++|++.++.+.
T Consensus 274 ~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~ 309 (758)
T KOG1310|consen 274 TCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPT 309 (758)
T ss_pred eeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCce
Confidence 235778899999766655445589999998877543
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.4e-14 Score=160.41 Aligned_cols=306 Identities=12% Similarity=0.143 Sum_probs=201.2
Q ss_pred ceeeecccCcceeeecCc---cccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCC
Q 005352 196 LACVVDKQGEGERVRLNE---EDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDG 272 (701)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~---~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg 272 (701)
++++..|...+.++..+. ..+++|+.||+||||+..+...+........++..-.+.+.++.+.+.++.+|.++.||
T Consensus 1041 VAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG 1120 (1431)
T KOG1240|consen 1041 VAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDG 1120 (1431)
T ss_pred eehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCC
Confidence 566667777666554433 56888999999999999876665444444444555678899999999999999999999
Q ss_pred cEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcC
Q 005352 273 VVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHG 352 (701)
Q Consensus 273 ~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (701)
.|++.+++........ ..+ . .+.....
T Consensus 1121 ~v~~~~id~~~~~~~~------~~~--------------------------~---------------------ri~n~~~ 1147 (1431)
T KOG1240|consen 1121 SVRVLRIDHYNVSKRV------ATQ--------------------------V---------------------RIPNLKK 1147 (1431)
T ss_pred eEEEEEccccccccce------eee--------------------------e---------------------ecccccC
Confidence 9999998763100000 000 0 0000011
Q ss_pred CccCeEEE-EEec--CC-eEEEEECCCcEEEEECCCCeeeeeec---CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCC
Q 005352 353 HSGEILDL-SWSK--NN-YLLSASIDKTVRLWRVGNDHCLRVFP---HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVL 425 (701)
Q Consensus 353 h~~~I~~l-~~s~--~~-~l~s~s~dg~I~iWd~~~~~~~~~~~---h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~ 425 (701)
.+.+.++ ++.. .. .|+.+...+.|..||++........+ ..+.|++++.+| .++++++|...|.+.+||++
T Consensus 1148 -~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp-~~~WlviGts~G~l~lWDLR 1225 (1431)
T KOG1240|consen 1148 -DGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDP-WCNWLVIGTSRGQLVLWDLR 1225 (1431)
T ss_pred -CCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecC-CceEEEEecCCceEEEEEee
Confidence 1112222 2222 12 67788888999999999887777665 458899999999 89999999999999999999
Q ss_pred CCcEEEEe--cCCCcEEEEEEeeCC---CeEEEE-e-cCCcEEEEECCCCeeeeeeeEE-----eecccCC----CCCCe
Q 005352 426 SCHVVDWV--DIRQIVTAVCYRPDG---QGGIVG-S-MMGDCRFYNVSDNHLELDAEIC-----VHSKKKA----PCKRI 489 (701)
Q Consensus 426 ~~~~~~~~--~~~~~i~~i~~sp~g---~~l~~g-s-~dg~v~i~d~~~~~~~~~~~~~-----~~~~~~~----~~~~i 489 (701)
=+..+... .+..+|+.++.+|-. ...+++ . ..+.|.+|++.++......-.. +...... ....+
T Consensus 1226 F~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~ 1305 (1431)
T KOG1240|consen 1226 FRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSL 1305 (1431)
T ss_pred cCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcc
Confidence 88777433 345678888887733 344444 3 4788999999988654332221 0000000 01111
Q ss_pred --eEEEEecCCCCEEEEEECCCcEEEEeCCcccee---------------------------------------------
Q 005352 490 --TGFQFLPQDSSKVMVSCADSQVRILQGPNVIGK--------------------------------------------- 522 (701)
Q Consensus 490 --~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~--------------------------------------------- 522 (701)
....+. ..+..+++|+.|..|+.||.......
T Consensus 1306 ~~~~~~~~-~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~ 1384 (1431)
T KOG1240|consen 1306 AGISCGVC-EKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEAL 1384 (1431)
T ss_pred cceeeecc-cCCceeeecCCccceeeccCCCcccccccccCccccccccchhccccccCCCccchhhhhhhhhcCchhhc
Confidence 112222 25688999999999999994310000
Q ss_pred -----------eecccCCCCeEEEEEecC-CCEEEEEeCCCcEEEEe
Q 005352 523 -----------YKGLRRSGNQLSACFTSD-GKHIVSAGEDSNVYMWN 557 (701)
Q Consensus 523 -----------~~~~~~~~~v~~l~~s~d-g~~l~sgs~Dg~I~iWd 557 (701)
.....|..+|+++++... ..+|++++.||.|+||.
T Consensus 1385 ~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1385 RENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred ccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 001126677888877543 45889999999999994
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.6e-15 Score=150.42 Aligned_cols=225 Identities=20% Similarity=0.299 Sum_probs=164.8
Q ss_pred HHhHHhhhccceeeecccCcceeeecC--ccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEcc--C
Q 005352 186 KKRWFSRLRSLACVVDKQGEGERVRLN--EEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSP--D 261 (701)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp--d 261 (701)
...|++++..-+.+..|.+-++++..+ +..++.|+.|.++.|||.-.. +.+ ...-.||.+.|.+++|-| +
T Consensus 33 ~s~~lrrL~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~-Kll-----hsI~TgHtaNIFsvKFvP~tn 106 (758)
T KOG1310|consen 33 NSTWLRRLDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEY-KLL-----HSISTGHTANIFSVKFVPYTN 106 (758)
T ss_pred ccHHHhhcchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhc-cee-----eeeecccccceeEEeeeccCC
Confidence 356888888888888899999988765 457788999999999996521 111 112357999999999998 4
Q ss_pred CCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCcccc
Q 005352 262 GQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFR 341 (701)
Q Consensus 262 g~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (701)
.++++||..|..|+++|+...+.-..- .
T Consensus 107 nriv~sgAgDk~i~lfdl~~~~~~~~d----------------------------------------------------~ 134 (758)
T KOG1310|consen 107 NRIVLSGAGDKLIKLFDLDSSKEGGMD----------------------------------------------------H 134 (758)
T ss_pred CeEEEeccCcceEEEEecccccccccc----------------------------------------------------c
Confidence 678999999999999999764310000 0
Q ss_pred ccCCCeEEEcCCccCeEEEEEecCC--eEEEEECCCcEEEEECCCCee-------eeee----cCCCCeEEEEEeeCCCC
Q 005352 342 ILEKPLHEFHGHSGEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHC-------LRVF----PHSNYVTCVHFNPVDDN 408 (701)
Q Consensus 342 ~~~~~~~~~~~h~~~I~~l~~s~~~--~l~s~s~dg~I~iWd~~~~~~-------~~~~----~h~~~V~~l~f~p~~~~ 408 (701)
-.+.+.+.+..|...|.-|+..|++ .+.+++.||+|+-+|++.... ...+ ..--...|+.++|.+..
T Consensus 135 ~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~ 214 (758)
T KOG1310|consen 135 GMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPY 214 (758)
T ss_pred CccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCc
Confidence 0114456667899999999999998 899999999999999986321 1111 12235679999998999
Q ss_pred EEEEEEcCCcEEEEeCCCC------------------cEEEEec--C----C-------CcEEEEEEeeCCCeEEEEecC
Q 005352 409 YFISGSIDGKVRIWAVLSC------------------HVVDWVD--I----R-------QIVTAVCYRPDGQGGIVGSMM 457 (701)
Q Consensus 409 ~l~sgs~dg~v~iwd~~~~------------------~~~~~~~--~----~-------~~i~~i~~sp~g~~l~~gs~d 457 (701)
+|++|+.|-..++||.+.. .++..+. | . ..++-++|+|+|..|++.-..
T Consensus 215 ~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~g 294 (758)
T KOG1310|consen 215 YLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGG 294 (758)
T ss_pred eEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCC
Confidence 9999999999999995321 1121111 1 0 125678899999999988777
Q ss_pred CcEEEEECCCC
Q 005352 458 GDCRFYNVSDN 468 (701)
Q Consensus 458 g~v~i~d~~~~ 468 (701)
-.|+++|+...
T Consensus 295 EhVYlfdvn~~ 305 (758)
T KOG1310|consen 295 EHVYLFDVNED 305 (758)
T ss_pred eEEEEEeecCC
Confidence 78999998643
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.6e-14 Score=154.13 Aligned_cols=268 Identities=18% Similarity=0.202 Sum_probs=188.4
Q ss_pred cEEEEECCCC-eeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcE--E-----EEecCCCcEEEEEEeeC
Q 005352 376 TVRLWRVGND-HCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHV--V-----DWVDIRQIVTAVCYRPD 447 (701)
Q Consensus 376 ~I~iWd~~~~-~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~--~-----~~~~~~~~i~~i~~sp~ 447 (701)
.+.+|++... .+...+.-...|+|+.|+|.+.++++.|+.+|.|.+||++.+.. . ....|..+++.+.|..+
T Consensus 223 ~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~ 302 (555)
T KOG1587|consen 223 VLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQN 302 (555)
T ss_pred eEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEecc
Confidence 7899999877 66667778899999999999999999999999999999987654 2 34468889999999875
Q ss_pred CCe--EEEEecCCcEEEEECCCCeeeeeeeEEeec----ccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccc-
Q 005352 448 GQG--GIVGSMMGDCRFYNVSDNHLELDAEICVHS----KKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVI- 520 (701)
Q Consensus 448 g~~--l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~----~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~- 520 (701)
..- +++++.||.|..|+++.-....+....-.. ........++++.|.+.+...+++|+.+|.|.--.-....
T Consensus 303 ~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~ 382 (555)
T KOG1587|consen 303 EHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTP 382 (555)
T ss_pred CCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcc
Confidence 544 999999999999998865543322111111 1123456789999999999999999999999884433221
Q ss_pred ---eeeec----ccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCCCCccccccccccccccCCceEEecCCCCCC
Q 005352 521 ---GKYKG----LRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKC 593 (701)
Q Consensus 521 ---~~~~~----~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 593 (701)
..+++ ..|.++|.++.++|=+..++..+.|-+|+||.-.....|.. .+ .
T Consensus 383 ~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~-------~~--~--------------- 438 (555)
T KOG1587|consen 383 APEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLL-------SL--D--------------- 438 (555)
T ss_pred cccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcch-------hh--h---------------
Confidence 11222 34889999999999876666555599999998663321110 00 0
Q ss_pred CCCCCCCccccCCCCCCCccccCCCccccCccccccCCCCcccCCCCccCCC--Cccccccccchhhhhhhhhcccc-cc
Q 005352 594 GNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEKLPA--LSQLSSASALHKSQYKFLKSSCL-CT 670 (701)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~ 670 (701)
.....+..++|||.+ ...|++...+|.+.+||...-.. +...... ..+. .+
T Consensus 439 -----------~~~~~v~~vaWSptr---pavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~------------~~~l~~~ 492 (555)
T KOG1587|consen 439 -----------SSPDYVTDVAWSPTR---PAVFATVDGDGNLDIWDLLQDDEEPVLSQKVC------------SPALTRV 492 (555)
T ss_pred -----------hccceeeeeEEcCcC---ceEEEEEcCCCceehhhhhccccCCccccccc------------cccccee
Confidence 011124445666642 45788888999999999754432 2221111 1222 33
Q ss_pred cccCCCccEEEEecCCCeEeEEee
Q 005352 671 TSSHAWGLVIVTAGWDGRIRSFLN 694 (701)
Q Consensus 671 ~~~~~~g~~ivTgg~DG~Irvw~~ 694 (701)
.+++. |++|+.|+..|.|.+|..
T Consensus 493 ~~s~~-g~~lavGd~~G~~~~~~l 515 (555)
T KOG1587|consen 493 RWSPN-GKLLAVGDANGTTHILKL 515 (555)
T ss_pred ecCCC-CcEEEEecCCCcEEEEEc
Confidence 45566 999999999999999974
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=7e-15 Score=149.29 Aligned_cols=183 Identities=15% Similarity=0.314 Sum_probs=141.8
Q ss_pred eEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeee-cCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeC
Q 005352 347 LHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVF-PHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAV 424 (701)
Q Consensus 347 ~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~-~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~ 424 (701)
-..+..|.+.|.+-.|+|+| -|++++.||.|++|.- +|-.-.++ +...+|.|++|.|...+.+++. .+.+.|=-+
T Consensus 97 E~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~--g~h~~IKpL 173 (737)
T KOG1524|consen 97 ERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNSIVFCQ--GGHISIKPL 173 (737)
T ss_pred hhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCCceEEec--CCeEEEeec
Confidence 34567899999999999999 9999999999999984 44333333 3678899999999444445443 355666666
Q ss_pred CC-CcEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEE
Q 005352 425 LS-CHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVM 503 (701)
Q Consensus 425 ~~-~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~ 503 (701)
.. .++++|..|.+-|.++.|+|..+.+++|+.|-..++||-....+. ....|..+|++++|.| + ..++
T Consensus 174 ~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf---------~S~~~ey~ITSva~np-d-~~~~ 242 (737)
T KOG1524|consen 174 AANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLF---------TSAAEEYAITSVAFNP-E-KDYL 242 (737)
T ss_pred ccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcccc---------cCChhccceeeeeecc-c-ccee
Confidence 53 467799999999999999999999999999999999998754331 2455778999999999 4 6666
Q ss_pred EEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEE
Q 005352 504 VSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYM 555 (701)
Q Consensus 504 ~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~i 555 (701)
.++.+ ++| +. ....+.|..++||+||..++.|...|.+.+
T Consensus 243 v~S~n-t~R----------~~-~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 243 LWSYN-TAR----------FS-SPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred eeeee-eee----------ec-CCCccceEEEEEcCCCceeeccccCceEEE
Confidence 66543 333 21 125689999999999999999999998755
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.9e-15 Score=150.85 Aligned_cols=308 Identities=19% Similarity=0.175 Sum_probs=223.3
Q ss_pred HhhhccceeeecccCcceeeecCc--cccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccC--CCEE
Q 005352 190 FSRLRSLACVVDKQGEGERVRLNE--EDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPD--GQYL 265 (701)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd--g~~L 265 (701)
.++++...-+..|.+.++.+.++. +.+++++.|..|.+|+|......+. -..||...|...+|-|. .+.+
T Consensus 129 vqr~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~------f~SGH~~NvfQaKFiP~s~d~ti 202 (559)
T KOG1334|consen 129 VQRLRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLS------FESGHCNNVFQAKFIPFSGDRTI 202 (559)
T ss_pred HHHhhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccc------cccccccchhhhhccCCCCCcCc
Confidence 333433333456888888888875 5778899999999999976543332 24579999999999884 5679
Q ss_pred EEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCC
Q 005352 266 ASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEK 345 (701)
Q Consensus 266 asgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (701)
++++.||.|++=.+...... .
T Consensus 203 ~~~s~dgqvr~s~i~~t~~~-----------------------------------------------------------e 223 (559)
T KOG1334|consen 203 VTSSRDGQVRVSEILETGYV-----------------------------------------------------------E 223 (559)
T ss_pred eeccccCceeeeeeccccce-----------------------------------------------------------e
Confidence 99999999998776543211 1
Q ss_pred CeEEEcCCccCeEEEEEecCC--eEEEEECCCcEEEEECCCCeeeeeec----CCC---CeEEEEEeeCCCCEEEEEEcC
Q 005352 346 PLHEFHGHSGEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFP----HSN---YVTCVHFNPVDDNYFISGSID 416 (701)
Q Consensus 346 ~~~~~~~h~~~I~~l~~s~~~--~l~s~s~dg~I~iWd~~~~~~~~~~~----h~~---~V~~l~f~p~~~~~l~sgs~d 416 (701)
....+..|.+.|..++.-|.. .|++++.|+.+.-.|++++.+...+. +.. ....++.+|.+.+.|++|+.|
T Consensus 224 ~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~d 303 (559)
T KOG1334|consen 224 NTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSD 303 (559)
T ss_pred cceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChh
Confidence 123445699999999999987 89999999999999999876554442 333 678899999788899999999
Q ss_pred CcEEEEeCCCCcEE-------EEe------cCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeee--eeee---EEe
Q 005352 417 GKVRIWAVLSCHVV-------DWV------DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLE--LDAE---ICV 478 (701)
Q Consensus 417 g~v~iwd~~~~~~~-------~~~------~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~--~~~~---~~~ 478 (701)
-.+++||.+.-... .+. ...-.|++++|+.++.-|++...|-.|+++.-..+... .... ...
T Consensus 304 qf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~ 383 (559)
T KOG1334|consen 304 QFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYV 383 (559)
T ss_pred hhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhcc
Confidence 99999998753211 111 22346999999999999999999999999954433220 0000 001
Q ss_pred ecccCC--CCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 005352 479 HSKKKA--PCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMW 556 (701)
Q Consensus 479 ~~~~~~--~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iW 556 (701)
....+. ....|.++.|--....++++|+.-|.|.||+.++........+...-|+|+.=+|--..||+.+-|.-|+||
T Consensus 384 k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIW 463 (559)
T KOG1334|consen 384 KRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIW 463 (559)
T ss_pred chhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeee
Confidence 111122 223477888764478999999999999999988654433333334488999999999999999999999999
Q ss_pred eCCCCC
Q 005352 557 NCIGHE 562 (701)
Q Consensus 557 d~~~~~ 562 (701)
...+.+
T Consensus 464 TP~~~e 469 (559)
T KOG1334|consen 464 TPLTAE 469 (559)
T ss_pred cCCccc
Confidence 875544
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.9e-15 Score=138.88 Aligned_cols=294 Identities=12% Similarity=0.134 Sum_probs=200.9
Q ss_pred CCeEEEcCCccCeEEEEEecCCeEEEEECCCcEEEEECCCCeeeeeec--CCCCeEEEEEeeCCCCEEEEEEcCCcEEEE
Q 005352 345 KPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSIDGKVRIW 422 (701)
Q Consensus 345 ~~~~~~~~h~~~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~~~~~l~sgs~dg~v~iw 422 (701)
.|...+++|.+.|+++.|..+++|++|..-|.|++|++.+...+..+. +...|+.+..-| + ..+.+-+.|+.+.+|
T Consensus 5 dP~fvLRp~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p-~-d~l~tqgRd~~L~lw 82 (323)
T KOG0322|consen 5 DPFFVLRPHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIP-N-DSLDTQGRDPLLILW 82 (323)
T ss_pred CCeeEeccccchheehhhccchhhhcccccceEEEEEeecCccchhhhhhccceeeceeecC-C-cchhhcCCCceEEEE
Confidence 567788899999999999988899999999999999999988777776 788999999888 4 678888999999999
Q ss_pred eCCCCcEEEEecCCCcEEEEEEee-----CCC----eEEEEecCC-cEEEEECCCCeeeeeeeEEee-cccCCCCCCeeE
Q 005352 423 AVLSCHVVDWVDIRQIVTAVCYRP-----DGQ----GGIVGSMMG-DCRFYNVSDNHLELDAEICVH-SKKKAPCKRITG 491 (701)
Q Consensus 423 d~~~~~~~~~~~~~~~i~~i~~sp-----~g~----~l~~gs~dg-~v~i~d~~~~~~~~~~~~~~~-~~~~~~~~~i~~ 491 (701)
++.-...+.... -.++++-|.+ +++ .++.-+..- .+++-|..... +.... .......+.+++
T Consensus 83 ~ia~s~~i~i~S--i~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~t-----qv~i~dd~~~~Klgsvmc 155 (323)
T KOG0322|consen 83 TIAYSAFISIHS--IVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTT-----QVQIADDSERSKLGSVMC 155 (323)
T ss_pred EccCcceEEEee--eeccccccccceeccCCCcchhheecCCcccchhhhhccCccc-----eeEccCchhccccCceee
Confidence 998765543321 2334444433 211 111111000 01122221111 11111 112234455666
Q ss_pred EEEecCCC--CEEEEEECCCcEEEEeCCccce----------eeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 005352 492 FQFLPQDS--SKVMVSCADSQVRILQGPNVIG----------KYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCI 559 (701)
Q Consensus 492 l~~~p~~~--~~l~~~s~dg~I~iwd~~~~~~----------~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~ 559 (701)
..+-...+ -++++|-.+|.+.+||+..... .+....|..+|.++.+.+.-..=++|+.+-.+..|+++
T Consensus 156 ~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~ 235 (323)
T KOG0322|consen 156 QDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLN 235 (323)
T ss_pred eeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeec
Confidence 66433222 3566677799999999886422 22334488999999999877777888889999999987
Q ss_pred CCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCCcccCCC
Q 005352 560 GHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWP 639 (701)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~ 639 (701)
....... ....+.+.+-.+..+..-|+ +..++++++|+.+++++
T Consensus 236 ~s~gslq--------------------------------~~~e~~lknpGv~gvrIRpD----~KIlATAGWD~RiRVys 279 (323)
T KOG0322|consen 236 HSTGSLQ--------------------------------IRKEITLKNPGVSGVRIRPD----GKILATAGWDHRIRVYS 279 (323)
T ss_pred cccCccc--------------------------------ccceEEecCCCccceEEccC----CcEEeecccCCcEEEEE
Confidence 6531110 01111222333444556676 77888999999999999
Q ss_pred CccCCCCccccccccchhhhhhhhhcccccccccCCCccEEEEecCCCeEeEEeec
Q 005352 640 EEKLPALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFLNY 695 (701)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivTgg~DG~Irvw~~~ 695 (701)
..++.++.-+.-| ++.|++++|+++ -.++++|+.|++|-+|..|
T Consensus 280 wrtl~pLAVLkyH-----------sagvn~vAfspd-~~lmAaaskD~rISLWkLY 323 (323)
T KOG0322|consen 280 WRTLNPLAVLKYH-----------SAGVNAVAFSPD-CELMAAASKDARISLWKLY 323 (323)
T ss_pred eccCCchhhhhhh-----------hcceeEEEeCCC-CchhhhccCCceEEeeecC
Confidence 9988876554334 678999999999 8999999999999999876
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.4e-13 Score=127.04 Aligned_cols=198 Identities=16% Similarity=0.280 Sum_probs=153.0
Q ss_pred cccCcceeeecCccccccccccceEEEEEccCccc-----hhhhcccCcee-ccCCCcEEEEEEccCCCEEEEEeCCCcE
Q 005352 201 DKQGEGERVRLNEEDAMFCSKVQRVKVYHCKKRSK-----ELSALYKGQEI-QAHDGSILTMKFSPDGQYLASAGDDGVV 274 (701)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~-----~~~~~~~~~~l-~~H~~~I~~l~fspdg~~Lasgs~Dg~I 274 (701)
-|++.+..+.+.++.+++|+. |.|+=|.+....+ .+-.....+.. .-.--.|++|-..|...-+++++.|+.+
T Consensus 60 ahdgpiy~~~f~d~~Lls~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~ 138 (325)
T KOG0649|consen 60 AHDGPIYYLAFHDDFLLSGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVI 138 (325)
T ss_pred ccCCCeeeeeeehhheeeccC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEE
Confidence 577888888888887777664 9999999864332 22222111111 1112468999999987788888899999
Q ss_pred EEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCc
Q 005352 275 RLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHS 354 (701)
Q Consensus 275 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 354 (701)
.-||+++++ ...+++||+
T Consensus 139 y~~dlE~G~--------------------------------------------------------------i~r~~rGHt 156 (325)
T KOG0649|consen 139 YQVDLEDGR--------------------------------------------------------------IQREYRGHT 156 (325)
T ss_pred EEEEecCCE--------------------------------------------------------------EEEEEcCCc
Confidence 999999985 346778999
Q ss_pred cCeEEEEE-ecCCeEEEEECCCcEEEEECCCCeeeeeec---C--------CCCeEEEEEeeCCCCEEEEEEcCCcEEEE
Q 005352 355 GEILDLSW-SKNNYLLSASIDKTVRLWRVGNDHCLRVFP---H--------SNYVTCVHFNPVDDNYFISGSIDGKVRIW 422 (701)
Q Consensus 355 ~~I~~l~~-s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~---h--------~~~V~~l~f~p~~~~~l~sgs~dg~v~iw 422 (701)
+-|.++.- +.++.+++|+.||++|+||.++++++..+. | ...|.+++. +..+|++|+ ...+.+|
T Consensus 157 DYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~---~edWlvCGg-Gp~lslw 232 (325)
T KOG0649|consen 157 DYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV---NEDWLVCGG-GPKLSLW 232 (325)
T ss_pred ceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec---cCceEEecC-CCceeEE
Confidence 99999987 444599999999999999999999998875 1 234667765 567888776 5679999
Q ss_pred eCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCC
Q 005352 423 AVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSD 467 (701)
Q Consensus 423 d~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~ 467 (701)
.++..+....+..+..+..+.|..+ .+++++..+.|.-|.+..
T Consensus 233 hLrsse~t~vfpipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 233 HLRSSESTCVFPIPARVHLVDFVDD--CVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred eccCCCceEEEecccceeEeeeecc--eEEEeccccceeeeeecc
Confidence 9999999999999999999999755 677788778899998864
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.61 E-value=8.5e-15 Score=145.69 Aligned_cols=192 Identities=22% Similarity=0.358 Sum_probs=147.9
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEE
Q 005352 254 LTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACV 333 (701)
Q Consensus 254 ~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (701)
.+++|+.+|..|++|+.||++|||++....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~-------------------------------------------------- 177 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSML-------------------------------------------------- 177 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcch--------------------------------------------------
Confidence 789999999999999999999999986653
Q ss_pred EcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec---CCCCeEEEEEeeCCC--
Q 005352 334 VFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP---HSNYVTCVHFNPVDD-- 407 (701)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~---h~~~V~~l~f~p~~~-- 407 (701)
.+.....|...|.+|.|+|++ .|++-+.| ..+||+.+++.++.... .......+.|.. ++
T Consensus 178 ------------t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~-d~~~ 243 (398)
T KOG0771|consen 178 ------------TILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSV-DNAQ 243 (398)
T ss_pred ------------hhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecc-cCCC
Confidence 222345688999999999999 99999999 99999999997776654 334466677776 55
Q ss_pred -CEEEE--EEcCCcEEEEeCCCCc------EEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEe
Q 005352 408 -NYFIS--GSIDGKVRIWAVLSCH------VVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICV 478 (701)
Q Consensus 408 -~~l~s--gs~dg~v~iwd~~~~~------~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~ 478 (701)
.+++. ...-+.|+.|++.... ..+.......|++++.+++|+++++|+.+|.|.+|+..+.+..
T Consensus 244 ~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~------- 316 (398)
T KOG0771|consen 244 ETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRL------- 316 (398)
T ss_pred ceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeee-------
Confidence 33333 3334567777664321 1123334568999999999999999999999999999876543
Q ss_pred ecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCC
Q 005352 479 HSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP 517 (701)
Q Consensus 479 ~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~ 517 (701)
+..+..|...|+.+.|+| +.++++..+.+....+..+.
T Consensus 317 ~~vk~aH~~~VT~ltF~P-dsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 317 QYVKEAHLGFVTGLTFSP-DSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred EeehhhheeeeeeEEEcC-CcCcccccccCCceeEEEEe
Confidence 334667778999999999 78888888888888876543
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.9e-12 Score=126.79 Aligned_cols=198 Identities=15% Similarity=0.230 Sum_probs=144.2
Q ss_pred ccCeEEEEEecCCeEEEEECCCcEEEEECCCCeeeeeec----CCCCeEEEEEeeCCCCEEEEEE--cCCcEEEEeCCCC
Q 005352 354 SGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP----HSNYVTCVHFNPVDDNYFISGS--IDGKVRIWAVLSC 427 (701)
Q Consensus 354 ~~~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~----h~~~V~~l~f~p~~~~~l~sgs--~dg~v~iwd~~~~ 427 (701)
..+|.++.++.+. |+.+-.+ .|+|||+++.+.+.++. +...+.++.+++ .+.+++.-+ ..|.|.+||..+-
T Consensus 87 pt~IL~VrmNr~R-LvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~-~n~ylAyp~s~t~GdV~l~d~~nl 163 (391)
T KOG2110|consen 87 PTSILAVRMNRKR-LVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNN-ANCYLAYPGSTTSGDVVLFDTINL 163 (391)
T ss_pred CCceEEEEEccce-EEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCC-CCceEEecCCCCCceEEEEEcccc
Confidence 4578888887665 4444443 39999999999999886 344466666665 556776432 3588999999988
Q ss_pred cEE-EEecCCCcEEEEEEeeCCCeEEEEecCCc-EEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEE
Q 005352 428 HVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGD-CRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVS 505 (701)
Q Consensus 428 ~~~-~~~~~~~~i~~i~~sp~g~~l~~gs~dg~-v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~ 505 (701)
+.+ .+..|++.+.+++|+++|.+||+++..|+ ||+|.+.+++...+.. +......|.+++|+| +.++|++.
T Consensus 164 ~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFR------RG~~~~~IySL~Fs~-ds~~L~~s 236 (391)
T KOG2110|consen 164 QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFR------RGTYPVSIYSLSFSP-DSQFLAAS 236 (391)
T ss_pred eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeee------CCceeeEEEEEEECC-CCCeEEEe
Confidence 777 45579999999999999999999999998 6899999988765432 233357799999999 78999999
Q ss_pred ECCCcEEEEeCCccce------------------------------------eeec-ccCCCCe-EEEEEe--cCCCEEE
Q 005352 506 CADSQVRILQGPNVIG------------------------------------KYKG-LRRSGNQ-LSACFT--SDGKHIV 545 (701)
Q Consensus 506 s~dg~I~iwd~~~~~~------------------------------------~~~~-~~~~~~v-~~l~~s--~dg~~l~ 545 (701)
+..++|+||.+..... .|.. ....... ..+.+. +...++.
T Consensus 237 S~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~ 316 (391)
T KOG2110|consen 237 SNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVL 316 (391)
T ss_pred cCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEE
Confidence 9999999997642110 0000 0011111 223333 4678999
Q ss_pred EEeCCCcEEEEeCCCC
Q 005352 546 SAGEDSNVYMWNCIGH 561 (701)
Q Consensus 546 sgs~Dg~I~iWd~~~~ 561 (701)
.++.||.++.|.+.-.
T Consensus 317 vas~dG~~y~y~l~~~ 332 (391)
T KOG2110|consen 317 VASYDGHLYSYRLPPK 332 (391)
T ss_pred EEEcCCeEEEEEcCCC
Confidence 9999999999998764
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1e-13 Score=142.25 Aligned_cols=281 Identities=19% Similarity=0.192 Sum_probs=193.9
Q ss_pred cCCCcEEEEEEccCCCEE-EEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeee
Q 005352 248 AHDGSILTMKFSPDGQYL-ASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRR 326 (701)
Q Consensus 248 ~H~~~I~~l~fspdg~~L-asgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (701)
.|...-+.|..+|||+|| |||-.--.|++||+.+.....+..+....+....+..+. .+..++..-
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~-----------SK~v~L~~D-- 115 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDY-----------SKSVFLQND-- 115 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccch-----------hhheEeecC--
Confidence 377788999999999985 667778899999998876554444333322221111111 000000000
Q ss_pred cCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEee
Q 005352 327 TSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNP 404 (701)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p 404 (701)
..+.|..+. .....+. -...-.+++++.-. -|+.++....|+-++++.|..+..|. ..+.++++..++
T Consensus 116 ----R~IefHak~-----G~hy~~R-IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~ 185 (703)
T KOG2321|consen 116 ----RTIEFHAKY-----GRHYRTR-IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINE 185 (703)
T ss_pred ----ceeeehhhc-----Ceeeeee-cCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecC
Confidence 000000000 0000000 01223456666544 55666666679999999999999998 458999999999
Q ss_pred CCCCEEEEEEcCCcEEEEeCCCCcEEEEecCC-------C-----cEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeee
Q 005352 405 VDDNYFISGSIDGKVRIWAVLSCHVVDWVDIR-------Q-----IVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLEL 472 (701)
Q Consensus 405 ~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~-------~-----~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~ 472 (701)
...+|++|+.+|.|-.||.++...+..+... + .|+++.|+.+|-.+++|+.+|.+.|||++..+..+
T Consensus 186 -~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~ 264 (703)
T KOG2321|consen 186 -EHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLL 264 (703)
T ss_pred -ccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCcee
Confidence 7789999999999999999988766444322 2 39999999999999999999999999999877543
Q ss_pred eeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCc
Q 005352 473 DAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSN 552 (701)
Q Consensus 473 ~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~ 552 (701)
. .......+|..+.|.+.+.+..+++.....++|||-.+....... .....++.+|+-|++.++++|-+++.
T Consensus 265 ~-------kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asi-Ept~~lND~C~~p~sGm~f~Ane~~~ 336 (703)
T KOG2321|consen 265 V-------KDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASI-EPTSDLNDFCFVPGSGMFFTANESSK 336 (703)
T ss_pred e-------cccCCccceeeecccccCCCceEEecchHHhhhcccccCCceeec-cccCCcCceeeecCCceEEEecCCCc
Confidence 2 233345678999998876677777778889999997765544333 35566999999999999999999998
Q ss_pred EEEEeCCC
Q 005352 553 VYMWNCIG 560 (701)
Q Consensus 553 I~iWd~~~ 560 (701)
+..|=+..
T Consensus 337 m~~yyiP~ 344 (703)
T KOG2321|consen 337 MHTYYIPS 344 (703)
T ss_pred ceeEEccc
Confidence 88876654
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.3e-15 Score=157.95 Aligned_cols=267 Identities=18% Similarity=0.256 Sum_probs=198.2
Q ss_pred eecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeee
Q 005352 209 VRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEV 288 (701)
Q Consensus 209 ~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~ 288 (701)
+.-.+.++++|+.|..||||.... ..+....+||.+.|+.++.+.+..++|+++.|..|++|.+..+
T Consensus 198 fDrtg~~Iitgsdd~lvKiwS~et-------~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~------ 264 (1113)
T KOG0644|consen 198 FDRTGRYIITGSDDRLVKIWSMET-------ARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDG------ 264 (1113)
T ss_pred eccccceEeecCccceeeeeeccc-------hhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCC------
Confidence 344567889999999999997432 2233467899999999999999999999999999999999876
Q ss_pred cCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCCeE
Q 005352 289 DIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYL 368 (701)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~l 368 (701)
.++..+.||++.|++|+|+|-.
T Consensus 265 --------------------------------------------------------~pvsvLrghtgavtaiafsP~~-- 286 (1113)
T KOG0644|consen 265 --------------------------------------------------------APVSVLRGHTGAVTAIAFSPRA-- 286 (1113)
T ss_pred --------------------------------------------------------chHHHHhccccceeeeccCccc--
Confidence 4667788999999999999964
Q ss_pred EEEECCCcEEEEECCCCeeeee------ecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcEEEE
Q 005352 369 LSASIDKTVRLWRVGNDHCLRV------FPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAV 442 (701)
Q Consensus 369 ~s~s~dg~I~iWd~~~~~~~~~------~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i 442 (701)
+.+.||++++||.+- ..... +....-+-.+.|.. ++.-+++++.|+.-+.|.+...... ...+.-+
T Consensus 287 -sss~dgt~~~wd~r~-~~~~y~prp~~~~~~~~~~s~~~~~-~~~~f~Tgs~d~ea~n~e~~~l~~~-----~~~lif~ 358 (1113)
T KOG0644|consen 287 -SSSDDGTCRIWDARL-EPRIYVPRPLKFTEKDLVDSILFEN-NGDRFLTGSRDGEARNHEFEQLAWR-----SNLLIFV 358 (1113)
T ss_pred -cCCCCCceEeccccc-cccccCCCCCCcccccceeeeeccc-cccccccccCCcccccchhhHhhhh-----ccceEEE
Confidence 888999999999872 11111 12345577777776 8888999999999999876532211 0001111
Q ss_pred EEeeC-CCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccce
Q 005352 443 CYRPD-GQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIG 521 (701)
Q Consensus 443 ~~sp~-g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~ 521 (701)
..+.+ ..+.+++-.+-.+++|++.++.+.. ....|...+..+.++|.+....++++.||.+.|||+.....
T Consensus 359 t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H--------~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~p 430 (1113)
T KOG0644|consen 359 TRSSDLSSIVVTARNDHRLCVWNLYTGQLLH--------NLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIP 430 (1113)
T ss_pred eccccccccceeeeeeeEeeeeecccchhhh--------hhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCc
Confidence 11111 1345556667778899998875432 24456677889999999999999999999999999875443
Q ss_pred eeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 522 KYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 522 ~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
.-........+...+||++|..++....-|.++|.....++
T Consensus 431 ik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 431 IKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSK 471 (1113)
T ss_pred ceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCc
Confidence 32222246778889999999999998888999998865544
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.57 E-value=8.7e-13 Score=126.75 Aligned_cols=232 Identities=17% Similarity=0.231 Sum_probs=174.6
Q ss_pred EEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCe---eeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEe
Q 005352 349 EFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDH---CLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWA 423 (701)
Q Consensus 349 ~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~---~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd 423 (701)
.+.--..+|+|.+|+++. .++.+-....|.||...... ...++. |...|++|+|+| ..+.|++++.|..-++|.
T Consensus 5 ~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap-~snrIvtcs~drnayVw~ 83 (361)
T KOG1523|consen 5 VFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAP-KSNRIVTCSHDRNAYVWT 83 (361)
T ss_pred EeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecC-CCCceeEccCCCCccccc
Confidence 344456789999999999 89999999999999887665 445555 999999999999 889999999999999999
Q ss_pred CCCC----cEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCC
Q 005352 424 VLSC----HVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDS 499 (701)
Q Consensus 424 ~~~~----~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~ 499 (701)
...+ +.+.+..++...+++.|+|.++.|++|+....|.+|-++...--. .....++.....|+++.|+| ++
T Consensus 84 ~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWW----VsKhikkPirStv~sldWhp-nn 158 (361)
T KOG1523|consen 84 QPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWW----VSKHIKKPIRSTVTSLDWHP-NN 158 (361)
T ss_pred cCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEeccccee----hhhhhCCccccceeeeeccC-Cc
Confidence 8543 234567788999999999999999999999999999887543210 01112455567899999999 78
Q ss_pred CEEEEEECCCcEEEEeCC-----cc-------------ceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 005352 500 SKVMVSCADSQVRILQGP-----NV-------------IGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGH 561 (701)
Q Consensus 500 ~~l~~~s~dg~I~iwd~~-----~~-------------~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~ 561 (701)
-++++|+.|+..|++..- .. ..........+.+..+.|+|+|..|+-.+.|+.+.+=|...+
T Consensus 159 VLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p 238 (361)
T KOG1523|consen 159 VLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGP 238 (361)
T ss_pred ceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCC
Confidence 899999999999998631 00 000111135678999999999999999999999999998877
Q ss_pred CCCCc--cc-cccccccccccCCceEEe
Q 005352 562 EEPAH--DQ-AKTIRSLERFTTNASIAI 586 (701)
Q Consensus 562 ~~~~~--~~-~~~~~~~~~~~~~~~~a~ 586 (701)
.+... .. .-+..++.+...+.+++.
T Consensus 239 ~~~v~~~~~~~lP~ls~~~ise~~vv~a 266 (361)
T KOG1523|consen 239 SERVQSVATAQLPLLSVSWISENSVVAA 266 (361)
T ss_pred chhccchhhccCCceeeEeecCCceeec
Confidence 53111 11 134445555544444443
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.1e-12 Score=137.89 Aligned_cols=202 Identities=13% Similarity=0.137 Sum_probs=133.4
Q ss_pred cCeEEEEEecCC-eEEEE-ECCCcEEEEECCC-Cee--eeeecCCCCeEEEEEeeCCCCEEEEEE-cCCcEEEEeCCC-C
Q 005352 355 GEILDLSWSKNN-YLLSA-SIDKTVRLWRVGN-DHC--LRVFPHSNYVTCVHFNPVDDNYFISGS-IDGKVRIWAVLS-C 427 (701)
Q Consensus 355 ~~I~~l~~s~~~-~l~s~-s~dg~I~iWd~~~-~~~--~~~~~h~~~V~~l~f~p~~~~~l~sgs-~dg~v~iwd~~~-~ 427 (701)
+....++++|++ +|+++ ..++.|.+|++.. +.. +...........++|+| ++++|++++ .++.|.+|++.+ +
T Consensus 35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~-~g~~l~v~~~~~~~v~v~~~~~~g 113 (330)
T PRK11028 35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDH-QGRFLFSASYNANCVSVSPLDKDG 113 (330)
T ss_pred CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECC-CCCEEEEEEcCCCeEEEEEECCCC
Confidence 446678999998 66555 4588999999973 332 33333445677899999 888877766 478999999964 2
Q ss_pred c---EEEEecCCCcEEEEEEeeCCCeEEEEe-cCCcEEEEECCCCeeeee-eeEEeecccCCCCCCeeEEEEecCCCCEE
Q 005352 428 H---VVDWVDIRQIVTAVCYRPDGQGGIVGS-MMGDCRFYNVSDNHLELD-AEICVHSKKKAPCKRITGFQFLPQDSSKV 502 (701)
Q Consensus 428 ~---~~~~~~~~~~i~~i~~sp~g~~l~~gs-~dg~v~i~d~~~~~~~~~-~~~~~~~~~~~~~~~i~~l~~~p~~~~~l 502 (701)
. .+...........++++|+++++++++ .++.|.+||+.+...... ..... ..........+.|+| +++++
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~---~~~~g~~p~~~~~~p-dg~~l 189 (330)
T PRK11028 114 IPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEV---TTVEGAGPRHMVFHP-NQQYA 189 (330)
T ss_pred CCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCce---ecCCCCCCceEEECC-CCCEE
Confidence 2 223233334567889999999886655 569999999976332110 00000 011123456789999 67777
Q ss_pred EEEEC-CCcEEEEeCCcc------ceeeeccc----CCCCeEEEEEecCCCEEEEEeC-CCcEEEEeCCCC
Q 005352 503 MVSCA-DSQVRILQGPNV------IGKYKGLR----RSGNQLSACFTSDGKHIVSAGE-DSNVYMWNCIGH 561 (701)
Q Consensus 503 ~~~s~-dg~I~iwd~~~~------~~~~~~~~----~~~~v~~l~~s~dg~~l~sgs~-Dg~I~iWd~~~~ 561 (701)
+++.. ++.|.+|++... ...+.... +......+.++|+|++|+++.. ++.|.+|+++..
T Consensus 190 yv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~ 260 (330)
T PRK11028 190 YCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSED 260 (330)
T ss_pred EEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCC
Confidence 77665 999999998631 11111111 1123346889999999999854 789999998654
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.9e-14 Score=144.00 Aligned_cols=205 Identities=20% Similarity=0.369 Sum_probs=155.5
Q ss_pred cccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCC
Q 005352 214 EDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEI 293 (701)
Q Consensus 214 ~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~ 293 (701)
+.++.++.||.+.|-.-..+ ..+.+.+|.+.|.+-.|+|||.-|+|+|+||.|++|.-...-
T Consensus 76 d~~~i~s~DGkf~il~k~~r--------VE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGML---------- 137 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKSAR--------VERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGML---------- 137 (737)
T ss_pred ceEEEEcCCceEEEecccch--------hhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchH----------
Confidence 45677889999888753221 113467899999999999999999999999999999843221
Q ss_pred CCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC--eEEEE
Q 005352 294 DPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLSA 371 (701)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~--~l~s~ 371 (701)
..++.....+|.|++|.|+. .+++.
T Consensus 138 -----------------------------------------------------RStl~Q~~~~v~c~~W~p~S~~vl~c~ 164 (737)
T KOG1524|consen 138 -----------------------------------------------------RSTVVQNEESIRCARWAPNSNSIVFCQ 164 (737)
T ss_pred -----------------------------------------------------HHHHhhcCceeEEEEECCCCCceEEec
Confidence 11122245689999999987 44444
Q ss_pred ECCCcEEEEECCCC-eeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCe
Q 005352 372 SIDKTVRLWRVGND-HCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQG 450 (701)
Q Consensus 372 s~dg~I~iWd~~~~-~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~ 450 (701)
+ +.+.|=-+.-. +.++--.|.+-|.++.|+| ..+++++|+.|-..+|||-....+.....|..+|++++|.|+ +.
T Consensus 165 g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~-~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd-~~ 240 (737)
T KOG1524|consen 165 G--GHISIKPLAANSKIIRWRAHDGLVLSLSWST-QSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPE-KD 240 (737)
T ss_pred C--CeEEEeecccccceeEEeccCcEEEEeecCc-cccceeecCCceeEEeecccCcccccCChhccceeeeeeccc-cc
Confidence 3 34555444433 3444445999999999999 889999999999999999987777788889999999999999 67
Q ss_pred EEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEE
Q 005352 451 GIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRIL 514 (701)
Q Consensus 451 l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iw 514 (701)
+++++. .++++ .....+.|..++|++ ++..+++|+..|.+.+-
T Consensus 241 ~~v~S~-nt~R~-------------------~~p~~GSifnlsWS~-DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 241 YLLWSY-NTARF-------------------SSPRVGSIFNLSWSA-DGTQATCGTSTGQLIVA 283 (737)
T ss_pred eeeeee-eeeee-------------------cCCCccceEEEEEcC-CCceeeccccCceEEEe
Confidence 777765 33442 223346799999999 79999999999988763
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.7e-13 Score=146.16 Aligned_cols=233 Identities=15% Similarity=0.119 Sum_probs=157.2
Q ss_pred ccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCC---CcEEEEEeecCeeeeeecCCCCCCce
Q 005352 221 KVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDD---GVVRLWQVVEDERLTEVDIPEIDPSC 297 (701)
Q Consensus 221 ~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D---g~I~iWd~~~~~~~~~~~~~~~~~~~ 297 (701)
.+..|.|||++.... +.+..|...|.+.+|+|||++|+.++.+ ..|.+||+.+++..
T Consensus 182 ~~~~i~i~d~dg~~~--------~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~------------ 241 (429)
T PRK01742 182 QPYEVRVADYDGFNQ--------FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARK------------ 241 (429)
T ss_pred ceEEEEEECCCCCCc--------eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceE------------
Confidence 357899998764331 3455688899999999999999988754 36999998776421
Q ss_pred eEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEE-ECCC
Q 005352 298 IYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSA-SIDK 375 (701)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~-s~dg 375 (701)
.+..+.+| ...++|+|+| .|+.+ +.+|
T Consensus 242 ------------------------------------------------~l~~~~g~---~~~~~wSPDG~~La~~~~~~g 270 (429)
T PRK01742 242 ------------------------------------------------VVASFRGH---NGAPAFSPDGSRLAFASSKDG 270 (429)
T ss_pred ------------------------------------------------EEecCCCc---cCceeECCCCCEEEEEEecCC
Confidence 11112233 2357999999 66655 4688
Q ss_pred cEEEE--ECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEE-cCCcEEEEeCCC--CcEEEEecCCCcEEEEEEeeCCCe
Q 005352 376 TVRLW--RVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGS-IDGKVRIWAVLS--CHVVDWVDIRQIVTAVCYRPDGQG 450 (701)
Q Consensus 376 ~I~iW--d~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs-~dg~v~iwd~~~--~~~~~~~~~~~~i~~i~~sp~g~~ 450 (701)
.+.|| |+.+++......+...+....|+| +++.|+.++ .+|...||++.. +.. ....+.. ....|+|+|+.
T Consensus 271 ~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSp-DG~~i~f~s~~~g~~~I~~~~~~~~~~-~~l~~~~--~~~~~SpDG~~ 346 (429)
T PRK01742 271 VLNIYVMGANGGTPSQLTSGAGNNTEPSWSP-DGQSILFTSDRSGSPQVYRMSASGGGA-SLVGGRG--YSAQISADGKT 346 (429)
T ss_pred cEEEEEEECCCCCeEeeccCCCCcCCEEECC-CCCEEEEEECCCCCceEEEEECCCCCe-EEecCCC--CCccCCCCCCE
Confidence 76555 676776655555667788999999 888777555 568888887643 322 2233333 45789999999
Q ss_pred EEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCC--ccceeeecccC
Q 005352 451 GIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP--NVIGKYKGLRR 528 (701)
Q Consensus 451 l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~--~~~~~~~~~~~ 528 (701)
|+..+.++ +.+||+.++..... ... .......|+| ++.+|+.++.++.+.+|++. +.........+
T Consensus 347 ia~~~~~~-i~~~Dl~~g~~~~l-----t~~-----~~~~~~~~sP-dG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~ 414 (429)
T PRK01742 347 LVMINGDN-VVKQDLTSGSTEVL-----SST-----FLDESPSISP-NGIMIIYSSTQGLGKVLQLVSADGRFKARLPGS 414 (429)
T ss_pred EEEEcCCC-EEEEECCCCCeEEe-----cCC-----CCCCCceECC-CCCEEEEEEcCCCceEEEEEECCCCceEEccCC
Confidence 98887755 56699987754321 000 1124577999 78899999999988887753 22233333346
Q ss_pred CCCeEEEEEecC
Q 005352 529 SGNQLSACFTSD 540 (701)
Q Consensus 529 ~~~v~~l~~s~d 540 (701)
.+.+...+|+|-
T Consensus 415 ~g~~~~p~wsp~ 426 (429)
T PRK01742 415 DGQVKFPAWSPY 426 (429)
T ss_pred CCCCCCcccCCC
Confidence 677888899874
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.1e-13 Score=137.89 Aligned_cols=199 Identities=16% Similarity=0.184 Sum_probs=154.3
Q ss_pred EEEEEecCC-eEEEEECCCcEEEEECCCCeeeeee-cCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEec-
Q 005352 358 LDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVF-PHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVD- 434 (701)
Q Consensus 358 ~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~-~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~- 434 (701)
..++|+.+| .|++++.||++|||+..+...+... .|...|.++.|+| |+++|++-+.| ..+||+.+++..+....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 788999998 9999999999999997776655554 4999999999999 99999999999 89999999996664443
Q ss_pred --CCCcEEEEEEeeCC---Ce--EEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEEC
Q 005352 435 --IRQIVTAVCYRPDG---QG--GIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCA 507 (701)
Q Consensus 435 --~~~~i~~i~~sp~g---~~--l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~ 507 (701)
.+.....+.|+.++ .+ ++....-+.|+.|++...+.- .+............|++++.++ ++++++.|+.
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~---~~l~~~~~~~~~~siSsl~VS~-dGkf~AlGT~ 301 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS---NFLRLRKKIKRFKSISSLAVSD-DGKFLALGTM 301 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc---cccchhhhhhccCcceeEEEcC-CCcEEEEecc
Confidence 34557778888776 22 233334566777777543321 0001111223345799999999 8999999999
Q ss_pred CCcEEEEeCCccceeeec-ccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 508 DSQVRILQGPNVIGKYKG-LRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 508 dg~I~iwd~~~~~~~~~~-~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
||.|-|++..+....+.. ..|...|+.+.|+|+.+++++.+.|..+.+..+.-.+
T Consensus 302 dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd~ 357 (398)
T KOG0771|consen 302 DGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAVDK 357 (398)
T ss_pred CCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEeecc
Confidence 999999999876655433 4488999999999999999999999999999876643
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.7e-12 Score=125.09 Aligned_cols=284 Identities=13% Similarity=0.237 Sum_probs=183.4
Q ss_pred cccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccC-CCEEEEEeCCCcEEEEEeecCeeeeeecCCCCC
Q 005352 216 AMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPD-GQYLASAGDDGVVRLWQVVEDERLTEVDIPEID 294 (701)
Q Consensus 216 ~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~ 294 (701)
++++..|..|+||+-+. .....+.. ..+..|+||+|-|. +.-|+.|+.. -|.||............
T Consensus 113 fava~nddvVriy~kss--t~pt~Lks-----~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~r~~----- 179 (445)
T KOG2139|consen 113 FAVATNDDVVRIYDKSS--TCPTKLKS-----VSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNANRNI----- 179 (445)
T ss_pred hhhhccCcEEEEeccCC--CCCceecc-----hhhcceeEEEeccCCcceeeeeecc-eeEEEEcCccccccccc-----
Confidence 45678888999997433 22222211 14567999999996 4567778775 49999875421110000
Q ss_pred CceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEEC
Q 005352 295 PSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASI 373 (701)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~ 373 (701)
+..+. ....+....|| ..|+++.|.++| .+++++.
T Consensus 180 ------------------------------~~~s~-------------~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~ 215 (445)
T KOG2139|consen 180 ------------------------------RMMST-------------HHLQVLQDPGH-NPVTSMQWNEDGTILVTASF 215 (445)
T ss_pred ------------------------------ccccc-------------cchhheeCCCC-ceeeEEEEcCCCCEEeeccc
Confidence 00000 00122333566 789999999999 8888775
Q ss_pred -CCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCC-CCcEEEEecCCCcEEEEEEeeCCCe
Q 005352 374 -DKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVL-SCHVVDWVDIRQIVTAVCYRPDGQG 450 (701)
Q Consensus 374 -dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~-~~~~~~~~~~~~~i~~i~~sp~g~~ 450 (701)
|..|.|||..++.++.... ..+.++-+.|+| ++.+|+++.-|+..++|+.. +.....+....+.|...+|+|+|++
T Consensus 216 gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP-dgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsf 294 (445)
T KOG2139|consen 216 GSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-DGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSF 294 (445)
T ss_pred CcceEEEEcCCCCCcccccccCCCceeeEEEcC-CCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCE
Confidence 6789999999998877663 567789999999 99999999999999999554 4445567777779999999999998
Q ss_pred EEEEecCCcEEEEECCCCe--eeee---------eeEE-----eecccCCCCCCeeEEEEecCCCCEEEEEECCCc----
Q 005352 451 GIVGSMMGDCRFYNVSDNH--LELD---------AEIC-----VHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQ---- 510 (701)
Q Consensus 451 l~~gs~dg~v~i~d~~~~~--~~~~---------~~~~-----~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~---- 510 (701)
|+.... |.-++|.+.-.. .... .... .......-+..+.+++|.| .+.++++.-..+.
T Consensus 295 LLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDp-sGeyLav~fKg~~~v~~ 372 (445)
T KOG2139|consen 295 LLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDP-SGEYLAVIFKGQSFVLL 372 (445)
T ss_pred EEEEEc-CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECC-CCCEEEEEEcCCchhhh
Confidence 776654 445555543211 0000 0000 1111222357789999999 7888888766433
Q ss_pred ----EEEEeCCcccee-ee--cccCCCCeEEEEEec---CCCEEEEEeCCCcEEEEeCC
Q 005352 511 ----VRILQGPNVIGK-YK--GLRRSGNQLSACFTS---DGKHIVSAGEDSNVYMWNCI 559 (701)
Q Consensus 511 ----I~iwd~~~~~~~-~~--~~~~~~~v~~l~~s~---dg~~l~sgs~Dg~I~iWd~~ 559 (701)
|.+||.+..... +. +.........++|+| +|.+|..+=..|.+.-|.+.
T Consensus 373 ~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 373 CKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred hhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 566776642221 11 222233355667766 56777777777888877754
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=7.6e-13 Score=135.04 Aligned_cols=191 Identities=18% Similarity=0.237 Sum_probs=153.5
Q ss_pred cCC-eEEEEECCCcEEEEECCCCeeeeeec-----CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCC-----------
Q 005352 364 KNN-YLLSASIDKTVRLWRVGNDHCLRVFP-----HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS----------- 426 (701)
Q Consensus 364 ~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-----h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~----------- 426 (701)
+.+ -|+.|-.-|.|.+.|....+..+.|. ....|+|+.|-|.+...|+.+..+|.+++||..-
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~ 262 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQA 262 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccc
Confidence 445 78888888999999887754444443 4578999999998888999999999999997621
Q ss_pred ---C---------------cEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCC
Q 005352 427 ---C---------------HVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKR 488 (701)
Q Consensus 427 ---~---------------~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 488 (701)
+ .+..|.-..+.|..++|+|||++||+.+.||.++|||..+.++ ....+.....
T Consensus 263 ~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eL--------lg~mkSYFGG 334 (636)
T KOG2394|consen 263 LKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQEL--------LGVMKSYFGG 334 (636)
T ss_pred cCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHH--------HHHHHhhccc
Confidence 0 0112333445789999999999999999999999999987653 2334555678
Q ss_pred eeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEec-----------------------------
Q 005352 489 ITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTS----------------------------- 539 (701)
Q Consensus 489 i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~----------------------------- 539 (701)
..|++|+| |+++|++|+.|.-|.||.+.....+..+++|...|..++|.|
T Consensus 335 LLCvcWSP-DGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~ 413 (636)
T KOG2394|consen 335 LLCVCWSP-DGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRA 413 (636)
T ss_pred eEEEEEcC-CccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecccccccccccccccccccccchhccccccc
Confidence 99999999 899999999999999999999888999999999999999983
Q ss_pred --C----C-------------CEEEEEeCCCcEEEEeCCCCCC
Q 005352 540 --D----G-------------KHIVSAGEDSNVYMWNCIGHEE 563 (701)
Q Consensus 540 --d----g-------------~~l~sgs~Dg~I~iWd~~~~~~ 563 (701)
+ + -.|.+.+.|-.+.+||+.....
T Consensus 414 ~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L 456 (636)
T KOG2394|consen 414 NGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVL 456 (636)
T ss_pred CCCCCcCCCcccccccccceEEEeecccccceEEEEecchhhc
Confidence 0 1 1467888999999999987653
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.50 E-value=8.2e-14 Score=139.68 Aligned_cols=275 Identities=14% Similarity=0.117 Sum_probs=204.0
Q ss_pred eEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecC
Q 005352 357 ILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDI 435 (701)
Q Consensus 357 I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~ 435 (701)
-..+.++.+| +|+.|+.-|.|..+|..+++....+.-...|.++.|.. +.++||++ ....++|||-. |.-+..+..
T Consensus 132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LH-neq~~AVA-QK~y~yvYD~~-GtElHClk~ 208 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLH-NEQFFAVA-QKKYVYVYDNN-GTELHCLKR 208 (545)
T ss_pred CeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhc-chHHHHhh-hhceEEEecCC-CcEEeehhh
Confidence 4578899999 99999999999999999999999999888999999997 77777665 57789999964 555555556
Q ss_pred CCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEe
Q 005352 436 RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQ 515 (701)
Q Consensus 436 ~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd 515 (701)
...|..+.|-|.--+|++++..|.++.-|+.++++... .....+.+..+.-+| -...+-+|...|+|.+|.
T Consensus 209 ~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~--------~~t~~G~~~vm~qNP-~NaVih~GhsnGtVSlWS 279 (545)
T KOG1272|consen 209 HIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVAS--------IRTGAGRTDVMKQNP-YNAVIHLGHSNGTVSLWS 279 (545)
T ss_pred cCchhhhcccchhheeeecccCCceEEEeechhhhhHH--------HHccCCccchhhcCC-ccceEEEcCCCceEEecC
Confidence 67899999999988999999999999999999886532 222335677777788 567888899999999999
Q ss_pred CCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCCCCccccccccccccccCCceEEecCCCC-CCC
Q 005352 516 GPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGL-KCG 594 (701)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~ 594 (701)
........+...|.++|.++++.++|+|++|++.|..++|||+.+-.++.........+--.+.....+|+.|... ..|
T Consensus 280 P~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~SqkglLA~~~G~~v~iw 359 (545)
T KOG1272|consen 280 PNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKGLLALSYGDHVQIW 359 (545)
T ss_pred CCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCccccccccccceeeecCCeeeee
Confidence 8877777777789999999999999999999999999999999988765544444444444444555566665432 222
Q ss_pred C-------CCCCCccccCCCCCCCccccCCCcccc--------CccccccCCCCcccCCCCccC
Q 005352 595 N-------AEKEPQLHVSDDDSPENLAFAPARFSL--------GQEYVFESFPKGCATWPEEKL 643 (701)
Q Consensus 595 ~-------~~~~~~~~~~~~~~~~~l~~sp~~~~~--------~~~~~~~s~d~~~~~W~~~~~ 643 (701)
. ..+.+.+.......+..|.|.|-...+ ...++-++.+-..-.|..+..
T Consensus 360 ~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsilVPGsGePN~Ds~e~nPf 423 (545)
T KOG1272|consen 360 KDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSILVPGSGEPNYDSLEDNPF 423 (545)
T ss_pred hhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeEeccCCCCCCcchhccCcc
Confidence 1 222233333334477778887753322 233455555555544544433
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.8e-12 Score=120.79 Aligned_cols=282 Identities=17% Similarity=0.156 Sum_probs=190.5
Q ss_pred ceeeecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEE-EEeCCCcEEEEEeecCee
Q 005352 206 GERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLA-SAGDDGVVRLWQVVEDER 284 (701)
Q Consensus 206 ~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~La-sgs~Dg~I~iWd~~~~~~ 284 (701)
-.+++++++++++++.- ++.|.|...- ++..++.. -..|.-+.|..|..+++ .+..|+.|.+|++...+-
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tl--q~~qlf~c------ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew 83 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETL--QLHQLFLC------LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEW 83 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchh--hHHHHHHH------HHHhhheeeeccceeeeeeeeccceEEEEEeeccee
Confidence 46788999998887766 7778874422 22222211 34577899998877655 456788999999987653
Q ss_pred eeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEec
Q 005352 285 LTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK 364 (701)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~ 364 (701)
. ..+......+..++|+|
T Consensus 84 ~--------------------------------------------------------------ckIdeg~agls~~~WSP 101 (447)
T KOG4497|consen 84 Y--------------------------------------------------------------CKIDEGQAGLSSISWSP 101 (447)
T ss_pred E--------------------------------------------------------------EEeccCCCcceeeeECC
Confidence 2 22334557889999999
Q ss_pred CC--eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcC--------------------------
Q 005352 365 NN--YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSID-------------------------- 416 (701)
Q Consensus 365 ~~--~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~d-------------------------- 416 (701)
+| .|.+...+-.|.+|.+.+.++...-.....+..++|+| ++++.+.++.-
T Consensus 102 dgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~-dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~D 180 (447)
T KOG4497|consen 102 DGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHP-DGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTID 180 (447)
T ss_pred CcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECC-CCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCccc
Confidence 99 67788889999999999988765554455678899999 88887766532
Q ss_pred ----------CcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeee-------------
Q 005352 417 ----------GKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELD------------- 473 (701)
Q Consensus 417 ----------g~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~------------- 473 (701)
..+.+||..-.-.+......-.+..++|+|.+++|++|+.|+.+++.+--+-+...+
T Consensus 181 ltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~ 260 (447)
T KOG4497|consen 181 LTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLH 260 (447)
T ss_pred ccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhh
Confidence 123333322111222223335688999999999999999999988765322110000
Q ss_pred ----------------------------------------eeEEeec-----ccCCCCCCeeEEEEecCCCCEEEEEEC-
Q 005352 474 ----------------------------------------AEICVHS-----KKKAPCKRITGFQFLPQDSSKVMVSCA- 507 (701)
Q Consensus 474 ----------------------------------------~~~~~~~-----~~~~~~~~i~~l~~~p~~~~~l~~~s~- 507 (701)
....++. ....+...+..++|++ |..++++-..
T Consensus 261 ~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~-Ds~y~aTrnd~ 339 (447)
T KOG4497|consen 261 LLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSC-DSTYAATRNDK 339 (447)
T ss_pred hhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecC-CceEEeeecCC
Confidence 0001111 1122345677899999 6777776554
Q ss_pred -CCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 005352 508 -DSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGH 561 (701)
Q Consensus 508 -dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~ 561 (701)
-+.+-+||+++..... ......+|....|+|....|+.+.....+++|.....
T Consensus 340 ~PnalW~Wdlq~l~l~a-vLiQk~piraf~WdP~~prL~vctg~srLY~W~psg~ 393 (447)
T KOG4497|consen 340 YPNALWLWDLQNLKLHA-VLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGP 393 (447)
T ss_pred CCceEEEEechhhhhhh-hhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCCc
Confidence 4779999998644322 2236678999999999988888888889999987664
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.2e-12 Score=140.07 Aligned_cols=196 Identities=15% Similarity=0.104 Sum_probs=135.7
Q ss_pred EEcCCccCeEEEEEecCC-eEEEEECC---CcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEE-cCCcEEE--
Q 005352 349 EFHGHSGEILDLSWSKNN-YLLSASID---KTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGS-IDGKVRI-- 421 (701)
Q Consensus 349 ~~~~h~~~I~~l~~s~~~-~l~s~s~d---g~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs-~dg~v~i-- 421 (701)
.+..|...+...+|+|+| +|+.++.+ ..|++||+.+++........+....++|+| +++.|+.+. .+|.+.|
T Consensus 198 ~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSP-DG~~La~~~~~~g~~~Iy~ 276 (429)
T PRK01742 198 IVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSP-DGSRLAFASSKDGVLNIYV 276 (429)
T ss_pred EeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECC-CCCEEEEEEecCCcEEEEE
Confidence 345577789999999999 77776643 369999998876543333334455789999 998888764 6776555
Q ss_pred EeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEe-cCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCC
Q 005352 422 WAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGS-MMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSS 500 (701)
Q Consensus 422 wd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs-~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~ 500 (701)
||+.++....+..+...+...+|+|||+.|+..+ .+|...+|++........ ... +.. ....|+| +++
T Consensus 277 ~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~----~l~----~~~--~~~~~Sp-DG~ 345 (429)
T PRK01742 277 MGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGAS----LVG----GRG--YSAQISA-DGK 345 (429)
T ss_pred EECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeE----Eec----CCC--CCccCCC-CCC
Confidence 4777777777666777788999999999877655 578888888754321111 111 111 3467899 677
Q ss_pred EEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 005352 501 KVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCI 559 (701)
Q Consensus 501 ~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~ 559 (701)
.|+.++.+ .+.+||+.+........ . .....++|+|+|++|+.++.++.+.+|.+.
T Consensus 346 ~ia~~~~~-~i~~~Dl~~g~~~~lt~-~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~ 401 (429)
T PRK01742 346 TLVMINGD-NVVKQDLTSGSTEVLSS-T-FLDESPSISPNGIMIIYSSTQGLGKVLQLV 401 (429)
T ss_pred EEEEEcCC-CEEEEECCCCCeEEecC-C-CCCCCceECCCCCEEEEEEcCCCceEEEEE
Confidence 78777765 46668987544322111 1 123567899999999999999998888764
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.2e-13 Score=138.53 Aligned_cols=231 Identities=13% Similarity=0.157 Sum_probs=185.7
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCC
Q 005352 250 DGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSE 329 (701)
Q Consensus 250 ~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (701)
.-.-..+.++.+|++|+.||.-|.|-.+|..+.....++..
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v--------------------------------------- 169 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV--------------------------------------- 169 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh---------------------------------------
Confidence 34457899999999999999999999999999876554432
Q ss_pred ccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCCeEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCE
Q 005352 330 SACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNY 409 (701)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~ 409 (701)
...|.++.|-.+..+++....+.+.||| ..|..+..+.....|..+.|.| ..-+
T Consensus 170 ------------------------~Etv~Dv~~LHneq~~AVAQK~y~yvYD-~~GtElHClk~~~~v~rLeFLP-yHfL 223 (545)
T KOG1272|consen 170 ------------------------METVRDVTFLHNEQFFAVAQKKYVYVYD-NNGTELHCLKRHIRVARLEFLP-YHFL 223 (545)
T ss_pred ------------------------hhhhhhhhhhcchHHHHhhhhceEEEec-CCCcEEeehhhcCchhhhcccc-hhhe
Confidence 2467788888777666677788999999 4666677777778899999999 7788
Q ss_pred EEEEEcCCcEEEEeCCCCcEEE-EecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCC
Q 005352 410 FISGSIDGKVRIWAVLSCHVVD-WVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKR 488 (701)
Q Consensus 410 l~sgs~dg~v~iwd~~~~~~~~-~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 488 (701)
|++++..|.++.-|+.+|+++. +....+.+..++-+|-+..+-+|...|+|.+|......... ....|.++
T Consensus 224 L~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLv--------KiLcH~g~ 295 (545)
T KOG1272|consen 224 LVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLV--------KILCHRGP 295 (545)
T ss_pred eeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHH--------HHHhcCCC
Confidence 8999999999999999999884 44456788889999998899999999999999988765432 23456789
Q ss_pred eeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEe
Q 005352 489 ITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWN 557 (701)
Q Consensus 489 i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd 557 (701)
|.++++.+ ++.++++++.|..++|||++...+...... ..+...++||..|. || ++....|.||.
T Consensus 296 V~siAv~~-~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkgl-LA-~~~G~~v~iw~ 360 (545)
T KOG1272|consen 296 VSSIAVDR-GGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKGL-LA-LSYGDHVQIWK 360 (545)
T ss_pred cceEEECC-CCcEEeecccccceeEeeeccccccceeec-CCCccccccccccc-ee-eecCCeeeeeh
Confidence 99999999 899999999999999999998775544432 45677888987763 33 33445799995
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.3e-11 Score=133.81 Aligned_cols=233 Identities=12% Similarity=0.065 Sum_probs=153.1
Q ss_pred ceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeC---CCcEEEEEeecCeeeeeecCCCCCCceeE
Q 005352 223 QRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGD---DGVVRLWQVVEDERLTEVDIPEIDPSCIY 299 (701)
Q Consensus 223 ~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~---Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~ 299 (701)
..|.++|++.... +.+..+...+.+.+|||||+.||..+. +..|.+|++.+++..
T Consensus 179 ~~l~~~d~dg~~~--------~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~-------------- 236 (429)
T PRK03629 179 YELRVSDYDGYNQ--------FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-------------- 236 (429)
T ss_pred eeEEEEcCCCCCC--------EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE--------------
Confidence 3677777654322 234446778999999999999987543 356888888765421
Q ss_pred EeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEE-EECCC--
Q 005352 300 FTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLS-ASIDK-- 375 (701)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s-~s~dg-- 375 (701)
.+..+.+| +..++|+|+| .|+. .+.+|
T Consensus 237 ----------------------------------------------~l~~~~~~---~~~~~~SPDG~~La~~~~~~g~~ 267 (429)
T PRK03629 237 ----------------------------------------------QVASFPRH---NGAPAFSPDGSKLAFALSKTGSL 267 (429)
T ss_pred ----------------------------------------------EccCCCCC---cCCeEECCCCCEEEEEEcCCCCc
Confidence 01111222 3457999999 5554 34455
Q ss_pred cEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcC-Cc--EEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEE
Q 005352 376 TVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSID-GK--VRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGI 452 (701)
Q Consensus 376 ~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~d-g~--v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~ 452 (701)
.|.+||+.+++......+...+....|+| +++.|+..+.+ +. |.++|+.++...............+|+|+|+.|+
T Consensus 268 ~I~~~d~~tg~~~~lt~~~~~~~~~~wSP-DG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia 346 (429)
T PRK03629 268 NLYVMDLASGQIRQVTDGRSNNTEPTWFP-DSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMV 346 (429)
T ss_pred EEEEEECCCCCEEEccCCCCCcCceEECC-CCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEE
Confidence 48899999887766665666788999999 99988777654 44 5555777776655544445567789999999988
Q ss_pred EEecC---CcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCc---EEEEeCCccceeeecc
Q 005352 453 VGSMM---GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQ---VRILQGPNVIGKYKGL 526 (701)
Q Consensus 453 ~gs~d---g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~---I~iwd~~~~~~~~~~~ 526 (701)
..+.+ ..|.+||+.++.... +.. . .......|+| ++..|+.++.++. +.++++.... .....
T Consensus 347 ~~~~~~g~~~I~~~dl~~g~~~~-----Lt~---~--~~~~~p~~Sp-DG~~i~~~s~~~~~~~l~~~~~~G~~-~~~l~ 414 (429)
T PRK03629 347 MVSSNGGQQHIAKQDLATGGVQV-----LTD---T--FLDETPSIAP-NGTMVIYSSSQGMGSVLNLVSTDGRF-KARLP 414 (429)
T ss_pred EEEccCCCceEEEEECCCCCeEE-----eCC---C--CCCCCceECC-CCCEEEEEEcCCCceEEEEEECCCCC-eEECc
Confidence 76543 358889988775431 111 0 1123567999 7888888887654 6667764322 22222
Q ss_pred cCCCCeEEEEEec
Q 005352 527 RRSGNQLSACFTS 539 (701)
Q Consensus 527 ~~~~~v~~l~~s~ 539 (701)
.+.+.+...+|+|
T Consensus 415 ~~~~~~~~p~Wsp 427 (429)
T PRK03629 415 ATDGQVKFPAWSP 427 (429)
T ss_pred cCCCCcCCcccCC
Confidence 3667788888887
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=8.7e-12 Score=121.64 Aligned_cols=311 Identities=14% Similarity=0.196 Sum_probs=192.3
Q ss_pred ccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec--CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCC---
Q 005352 354 SGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSC--- 427 (701)
Q Consensus 354 ~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~--- 427 (701)
...+..++|++.- .++.+..|-.|++||-.. ++...++ ....|+|++|-|.....|+.|+..| |.||.....
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~ 175 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNA 175 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCccccc
Confidence 3567889999865 889999999999999776 5555555 4567999999997788888888654 899965321
Q ss_pred -cE--------EEEe--cCCCcEEEEEEeeCCCeEEEEec-CCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEe
Q 005352 428 -HV--------VDWV--DIRQIVTAVCYRPDGQGGIVGSM-MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFL 495 (701)
Q Consensus 428 -~~--------~~~~--~~~~~i~~i~~sp~g~~l~~gs~-dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~ 495 (701)
+. .... ....+|+++.|.+||..+++++. +..|.|||..++..... .......++-+.|+
T Consensus 176 ~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL--------~~~glgg~slLkwS 247 (445)
T KOG2139|consen 176 NRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPL--------IPKGLGGFSLLKWS 247 (445)
T ss_pred ccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccc--------cccCCCceeeEEEc
Confidence 11 0111 12367999999999999999876 56799999998765321 12234668899999
Q ss_pred cCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCCCCc-cccccccc
Q 005352 496 PQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAH-DQAKTIRS 574 (701)
Q Consensus 496 p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~~~-~~~~~~~~ 574 (701)
| ++.+|+++.-|+..++|+........+..-..+.|...+|+|+|++|+-+.. |.-.+|.+.-..+... .....++.
T Consensus 248 P-dgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~ 325 (445)
T KOG2139|consen 248 P-DGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKR 325 (445)
T ss_pred C-CCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCccccee
Confidence 9 7999999999999999976544333333335569999999999988765542 4455666554433221 11111111
Q ss_pred cccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCcccccc--------CCCCcccCCCCccCCCC
Q 005352 575 LERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFE--------SFPKGCATWPEEKLPAL 646 (701)
Q Consensus 575 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~--------s~d~~~~~W~~~~~~~~ 646 (701)
...... ..... ..-...+....+..+++.|.+ .+++.. -....+..|+..+.+.+
T Consensus 326 ~lliaD-------L~e~t------i~ag~~l~cgeaq~lawDpsG----eyLav~fKg~~~v~~~k~~i~~fdtr~sp~v 388 (445)
T KOG2139|consen 326 VLLIAD-------LQEVT------ICAGQRLCCGEAQCLAWDPSG----EYLAVIFKGQSFVLLCKLHISRFDTRKSPPV 388 (445)
T ss_pred eeeecc-------chhhh------hhcCcccccCccceeeECCCC----CEEEEEEcCCchhhhhhhhhhhhcccccCce
Confidence 111100 00000 000123445667788888863 333221 11233456777766643
Q ss_pred ccccccccchhhhhhhhhcccccccccCCCccEEEEecCCCeEeE----EeecCCCc
Q 005352 647 SQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRS----FLNYGLPI 699 (701)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivTgg~DG~Irv----w~~~g~p~ 699 (701)
.-.... -+...+.+++ ++. ...+.|.+|..|-..|+|-- |++|-+|.
T Consensus 389 els~cg-~i~ge~P~~I---sF~--pl~n~g~lLsiaWsTGriq~ypl~f~~~~~p~ 439 (445)
T KOG2139|consen 389 ELSYCG-MIGGEYPAYI---SFG--PLKNEGRLLSIAWSTGRIQRYPLTFQCFRDPQ 439 (445)
T ss_pred EEEecc-cccCCCCceE---Eee--ecccCCcEEEEEeccCceEeeeeEEEeecccc
Confidence 221111 0011111111 112 22234888888888899864 57787773
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.7e-12 Score=131.11 Aligned_cols=198 Identities=22% Similarity=0.361 Sum_probs=137.8
Q ss_pred cCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCC-EEEEEeCCCcEEEEEeecCeeeeeec
Q 005352 211 LNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQ-YLASAGDDGVVRLWQVVEDERLTEVD 289 (701)
Q Consensus 211 ~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~-~Lasgs~Dg~I~iWd~~~~~~~~~~~ 289 (701)
..+-.+++|-..|.|.+.+... .+...++.... .-.+..|+|++|-|.+. .++.+-.+|.+.++|..-..
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~--~~~sklfne~r-~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~------ 253 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPIN--FEVSKLFNEER-LINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVC------ 253 (636)
T ss_pred CCCcceEEeeccCceEEecchh--hHHHHhhhhcc-cccccceEEEEEEeCCCceEEEEEecCceEEeeccccc------
Confidence 3445667777788888887543 45555444322 22457899999999543 55666778999999873211
Q ss_pred CCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eE
Q 005352 290 IPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YL 368 (701)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l 368 (701)
....+... ..-......+....... ...|+..+.--.+.|..++|+|+| +|
T Consensus 254 -~~t~p~~~------------~~k~~~~f~i~t~ksk~---------------~rNPv~~w~~~~g~in~f~FS~DG~~L 305 (636)
T KOG2394|consen 254 -GATAPSYQ------------ALKDGDQFAILTSKSKK---------------TRNPVARWHIGEGSINEFAFSPDGKYL 305 (636)
T ss_pred -cCCCCccc------------ccCCCCeeEEeeeeccc---------------cCCccceeEeccccccceeEcCCCceE
Confidence 00000000 00000000011000000 014555555566789999999999 99
Q ss_pred EEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEE-EecCCCcEEEEEEee
Q 005352 369 LSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD-WVDIRQIVTAVCYRP 446 (701)
Q Consensus 369 ~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~-~~~~~~~i~~i~~sp 446 (701)
++.+.||.+||+|..+.+.+..++ --+...|++|+| |+++|++|+.|--|.||.+..++++. -.+|+..|+.|+|.|
T Consensus 306 A~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP-DGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 306 ATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSP-DGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred EEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcC-CccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 999999999999999998887776 457799999999 99999999999999999999999884 468999999999998
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.7e-11 Score=133.52 Aligned_cols=233 Identities=17% Similarity=0.167 Sum_probs=151.3
Q ss_pred ceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCC---CcEEEEEeecCeeeeeecCCCCCCceeE
Q 005352 223 QRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDD---GVVRLWQVVEDERLTEVDIPEIDPSCIY 299 (701)
Q Consensus 223 ~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D---g~I~iWd~~~~~~~~~~~~~~~~~~~~~ 299 (701)
..|.+||..... .+.+..|...+.+.+|+|||++|+..+.+ ..|.+||+.+++..
T Consensus 184 ~~l~i~D~~g~~--------~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-------------- 241 (433)
T PRK04922 184 YALQVADSDGYN--------PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-------------- 241 (433)
T ss_pred EEEEEECCCCCC--------ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE--------------
Confidence 467788764321 13355677889999999999999987743 46889998765421
Q ss_pred EeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eE-EEEECCC--
Q 005352 300 FTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YL-LSASIDK-- 375 (701)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l-~s~s~dg-- 375 (701)
.+..+.+....++|+|+| .| ++.+.++
T Consensus 242 -------------------------------------------------~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~ 272 (433)
T PRK04922 242 -------------------------------------------------LVASFRGINGAPSFSPDGRRLALTLSRDGNP 272 (433)
T ss_pred -------------------------------------------------EeccCCCCccCceECCCCCEEEEEEeCCCCc
Confidence 111122334567999999 44 4556665
Q ss_pred cEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEc-CCc--EEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEE
Q 005352 376 TVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSI-DGK--VRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGI 452 (701)
Q Consensus 376 ~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~-dg~--v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~ 452 (701)
.|++||+.+++......+.......+|+| +++.|+..+. +|. |.++|+.+++.............++|+|+|+.|+
T Consensus 273 ~Iy~~d~~~g~~~~lt~~~~~~~~~~~sp-DG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia 351 (433)
T PRK04922 273 EIYVMDLGSRQLTRLTNHFGIDTEPTWAP-DGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIA 351 (433)
T ss_pred eEEEEECCCCCeEECccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEE
Confidence 59999999887665555555567889999 8988887763 444 7777877776554443444455789999999998
Q ss_pred EEecCC---cEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEEC---CCcEEEEeCCccceeeecc
Q 005352 453 VGSMMG---DCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCA---DSQVRILQGPNVIGKYKGL 526 (701)
Q Consensus 453 ~gs~dg---~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~---dg~I~iwd~~~~~~~~~~~ 526 (701)
..+.++ .|.+||+.++.... +. +........|+| ++..++..+. .+.|.+++..... .....
T Consensus 352 ~~~~~~~~~~I~v~d~~~g~~~~-----Lt-----~~~~~~~p~~sp-dG~~i~~~s~~~g~~~L~~~~~~g~~-~~~l~ 419 (433)
T PRK04922 352 MVHGSGGQYRIAVMDLSTGSVRT-----LT-----PGSLDESPSFAP-NGSMVLYATREGGRGVLAAVSTDGRV-RQRLV 419 (433)
T ss_pred EEECCCCceeEEEEECCCCCeEE-----CC-----CCCCCCCceECC-CCCEEEEEEecCCceEEEEEECCCCc-eEEcc
Confidence 875543 58999998765431 11 111234568999 6676666554 3457777775322 22222
Q ss_pred cCCCCeEEEEEec
Q 005352 527 RRSGNQLSACFTS 539 (701)
Q Consensus 527 ~~~~~v~~l~~s~ 539 (701)
.+.+.+...+|+|
T Consensus 420 ~~~g~~~~p~wsp 432 (433)
T PRK04922 420 SADGEVREPAWSP 432 (433)
T ss_pred cCCCCCCCCccCC
Confidence 2345566667765
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.6e-13 Score=128.71 Aligned_cols=223 Identities=15% Similarity=0.202 Sum_probs=158.0
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEE
Q 005352 255 TMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVV 334 (701)
Q Consensus 255 ~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (701)
-++|||+|+|+|+++.- .+.|-|.++-+..+-+
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf---------------------------------------------- 45 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLF---------------------------------------------- 45 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHH----------------------------------------------
Confidence 46899999999999875 6778887765432211
Q ss_pred cCCccccccCCCeEEEcCCccCeEEEEEecCC--eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCC-CEE
Q 005352 335 FPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDD-NYF 410 (701)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~--~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~-~~l 410 (701)
..-+.|..|.|..+. .|.....++.|.+|++...+-...+. ....+..+.|+| ++ .+|
T Consensus 46 -----------------~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSP-dgrhiL 107 (447)
T KOG4497|consen 46 -----------------LCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSP-DGRHIL 107 (447)
T ss_pred -----------------HHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECC-CcceEe
Confidence 113457778888887 56667889999999999988877776 667899999999 77 556
Q ss_pred EEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCee
Q 005352 411 ISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRIT 490 (701)
Q Consensus 411 ~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~ 490 (701)
.+...+-.|.+|.+.+.+.......+..+..++|+|+|++.+..+.-.....+++...+- ..+...........+
T Consensus 108 ~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~-----W~ll~~f~~dT~Dlt 182 (447)
T KOG4497|consen 108 LTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKA-----WILLKEFKLDTIDLT 182 (447)
T ss_pred eeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHH-----HHHHHhcCCCccccc
Confidence 677789999999999988877666667789999999999999887643322222221110 001111223345678
Q ss_pred EEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 005352 491 GFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNC 558 (701)
Q Consensus 491 ~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~ 558 (701)
++.|+| ++..++ +||..-....+. ..-.-.+..++|+|.+++|+.|+.|+.++|-|-
T Consensus 183 gieWsP-dg~~la---------Vwd~~Leykv~a-Ye~~lG~k~v~wsP~~qflavGsyD~~lrvlnh 239 (447)
T KOG4497|consen 183 GIEWSP-DGNWLA---------VWDNVLEYKVYA-YERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNH 239 (447)
T ss_pred CceECC-CCcEEE---------Eecchhhheeee-eeeccceeEEEeccccceEEeeccchhhhhhce
Confidence 999999 555554 565432112111 113356888999999999999999999988654
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.1e-11 Score=130.57 Aligned_cols=232 Identities=11% Similarity=0.098 Sum_probs=153.8
Q ss_pred ceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeC---CCcEEEEEeecCeeeeeecCCCCCCceeE
Q 005352 223 QRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGD---DGVVRLWQVVEDERLTEVDIPEIDPSCIY 299 (701)
Q Consensus 223 ~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~---Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~ 299 (701)
..|.++|.+... .+.+..|...+.+.+|+|||+.|+..+. +..|.+||+.+++.
T Consensus 182 ~~l~~~d~dg~~--------~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~--------------- 238 (435)
T PRK05137 182 KRLAIMDQDGAN--------VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR--------------- 238 (435)
T ss_pred eEEEEECCCCCC--------cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE---------------
Confidence 356677654321 1345568889999999999999988764 46899999877642
Q ss_pred EeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eE-EEEECCCc-
Q 005352 300 FTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YL-LSASIDKT- 376 (701)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l-~s~s~dg~- 376 (701)
..+..+.+.+...+|+|+| .| ++.+.++.
T Consensus 239 ------------------------------------------------~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~ 270 (435)
T PRK05137 239 ------------------------------------------------ELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNT 270 (435)
T ss_pred ------------------------------------------------EEeecCCCcccCcEECCCCCEEEEEEecCCCc
Confidence 1122344556788999999 54 46666665
Q ss_pred -EEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEc-CC--cEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEE
Q 005352 377 -VRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSI-DG--KVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGI 452 (701)
Q Consensus 377 -I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~-dg--~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~ 452 (701)
|.+||+.+++......+........|+| +++.|+..+. +| .|+++|+.++....+......+....|+|+|+.|+
T Consensus 271 ~Iy~~d~~~~~~~~Lt~~~~~~~~~~~sp-DG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia 349 (435)
T PRK05137 271 DIYTMDLRSGTTTRLTDSPAIDTSPSYSP-DGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIA 349 (435)
T ss_pred eEEEEECCCCceEEccCCCCccCceeEcC-CCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEE
Confidence 7777998887766555666677899999 9998887763 33 58888988877666555556677789999999998
Q ss_pred EEecC---CcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEEC-C-----CcEEEEeCCccceee
Q 005352 453 VGSMM---GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCA-D-----SQVRILQGPNVIGKY 523 (701)
Q Consensus 453 ~gs~d---g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~-d-----g~I~iwd~~~~~~~~ 523 (701)
....+ ..|.+||+.++.... +. ....+....|+| +++.|+..+. . ..++++|+......
T Consensus 350 ~~~~~~~~~~i~~~d~~~~~~~~-----lt-----~~~~~~~p~~sp-DG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~- 417 (435)
T PRK05137 350 FTKQGGGQFSIGVMKPDGSGERI-----LT-----SGFLVEGPTWAP-NGRVIMFFRQTPGSGGAPKLYTVDLTGRNER- 417 (435)
T ss_pred EEEcCCCceEEEEEECCCCceEe-----cc-----CCCCCCCCeECC-CCCEEEEEEccCCCCCcceEEEEECCCCceE-
Confidence 87653 357788876543221 10 112356788999 5666665544 2 25777787543322
Q ss_pred ecccCCCCeEEEEEec
Q 005352 524 KGLRRSGNQLSACFTS 539 (701)
Q Consensus 524 ~~~~~~~~v~~l~~s~ 539 (701)
... ....+...+|+|
T Consensus 418 ~l~-~~~~~~~p~Wsp 432 (435)
T PRK05137 418 EVP-TPGDASDPAWSP 432 (435)
T ss_pred Ecc-CCCCccCcccCC
Confidence 111 233455666665
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.8e-11 Score=115.31 Aligned_cols=236 Identities=12% Similarity=0.180 Sum_probs=173.6
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCC
Q 005352 250 DGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSE 329 (701)
Q Consensus 250 ~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (701)
...|..+.|..+...|..|+.|| .++|+........
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~------------------------------------------- 40 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCF------------------------------------------- 40 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhh-------------------------------------------
Confidence 34577788999999999999998 6777765432100
Q ss_pred ccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCCeEEEEECC--CcEEEEECCCCeeeeeecCCCCeEEEEEeeCCC
Q 005352 330 SACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASID--KTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDD 407 (701)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~l~s~s~d--g~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~ 407 (701)
......-.|--+-|+.+ +++..+.+ +.+++.++..+..+..+.....|.++.++.
T Consensus 41 -------------------~~~~~~~~IvEmLFSSS-LvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fpt~IL~VrmNr--- 97 (391)
T KOG2110|consen 41 -------------------SKDTEGVSIVEMLFSSS-LVAIVSIKQPRKLKVVHFKKKTTICEIFFPTSILAVRMNR--- 97 (391)
T ss_pred -------------------cccCCCeEEEEeecccc-eeEEEecCCCceEEEEEcccCceEEEEecCCceEEEEEcc---
Confidence 00001123444445433 44444433 459999999999998888899999999964
Q ss_pred CEEEEEEcCCcEEEEeCCCCcEEEEec----CCCcEEEEEEeeCCCeEEEE--ecCCcEEEEECCCCeeeeeeeEEeecc
Q 005352 408 NYFISGSIDGKVRIWAVLSCHVVDWVD----IRQIVTAVCYRPDGQGGIVG--SMMGDCRFYNVSDNHLELDAEICVHSK 481 (701)
Q Consensus 408 ~~l~sgs~dg~v~iwd~~~~~~~~~~~----~~~~i~~i~~sp~g~~l~~g--s~dg~v~i~d~~~~~~~~~~~~~~~~~ 481 (701)
+.|+++-.+ .|+|||+++.+++..+. +...+.++++++.+.+++.- ...|.|.+||+.+-+... .
T Consensus 98 ~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~--------~ 168 (391)
T KOG2110|consen 98 KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVN--------T 168 (391)
T ss_pred ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeee--------E
Confidence 556665544 59999999998885543 34456677777777788764 347899999998754332 2
Q ss_pred cCCCCCCeeEEEEecCCCCEEEEEECCCc-EEEEeCCccceeeecccC--CCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 005352 482 KKAPCKRITGFQFLPQDSSKVMVSCADSQ-VRILQGPNVIGKYKGLRR--SGNQLSACFTSDGKHIVSAGEDSNVYMWNC 558 (701)
Q Consensus 482 ~~~~~~~i~~l~~~p~~~~~l~~~s~dg~-I~iwd~~~~~~~~~~~~~--~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~ 558 (701)
...|...+.+++|++ +|.+|++++..|+ |||+.+.+....+...+. ...|.+++|+|++++|++.|..++|+|+.+
T Consensus 169 I~aH~~~lAalafs~-~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL 247 (391)
T KOG2110|consen 169 INAHKGPLAALAFSP-DGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKL 247 (391)
T ss_pred EEecCCceeEEEECC-CCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEe
Confidence 346778999999999 8999999999887 699999887777765443 456889999999999999999999999999
Q ss_pred CCCC
Q 005352 559 IGHE 562 (701)
Q Consensus 559 ~~~~ 562 (701)
+...
T Consensus 248 ~~~~ 251 (391)
T KOG2110|consen 248 EKVS 251 (391)
T ss_pred cccc
Confidence 8755
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.9e-11 Score=116.84 Aligned_cols=111 Identities=19% Similarity=0.381 Sum_probs=90.6
Q ss_pred ccCeEEEEEecCC-eE--EEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcC---CcEEEEeCCCC
Q 005352 354 SGEILDLSWSKNN-YL--LSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSID---GKVRIWAVLSC 427 (701)
Q Consensus 354 ~~~I~~l~~s~~~-~l--~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~d---g~v~iwd~~~~ 427 (701)
.++|.+++|+|++ .| ++|..++.|.+||++ .+.+..+. ...++.+.|+| ++++|++++.+ |.|.+||+++.
T Consensus 59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~-~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~~~ 135 (194)
T PF08662_consen 59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG-TQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVRKK 135 (194)
T ss_pred CCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec-CCCceEEEECC-CCCEEEEEEccCCCcEEEEEECCCC
Confidence 4579999999998 54 345577899999996 66666664 56788999999 99999998754 66999999988
Q ss_pred cEEEEecCCCcEEEEEEeeCCCeEEEEec------CCcEEEEECCCC
Q 005352 428 HVVDWVDIRQIVTAVCYRPDGQGGIVGSM------MGDCRFYNVSDN 468 (701)
Q Consensus 428 ~~~~~~~~~~~i~~i~~sp~g~~l~~gs~------dg~v~i~d~~~~ 468 (701)
+.+....+. .++.++|+|+|++|++++. |+.++||+....
T Consensus 136 ~~i~~~~~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 136 KKISTFEHS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred EEeeccccC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCe
Confidence 888776655 4789999999999999875 677899998654
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.41 E-value=7.5e-11 Score=113.61 Aligned_cols=177 Identities=9% Similarity=0.168 Sum_probs=132.7
Q ss_pred CcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCC-CCcEEEEec---CCCcEEEEEEeeCCCe
Q 005352 375 KTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVL-SCHVVDWVD---IRQIVTAVCYRPDGQG 450 (701)
Q Consensus 375 g~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~-~~~~~~~~~---~~~~i~~i~~sp~g~~ 450 (701)
..|.|||=....++..+....+|.++.+.+ ..|++.- .+.|.||... +.+.+..+. .+..+.+++-..+...
T Consensus 75 NkviIWDD~k~~~i~el~f~~~I~~V~l~r---~riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~ 150 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELSFNSEIKAVKLRR---DRIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSL 150 (346)
T ss_pred ceEEEEecccCcEEEEEEeccceeeEEEcC---CeEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceE
Confidence 469999988889999999999999999975 4555554 6789999987 334443332 2333333333333344
Q ss_pred EEE-EecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCc-EEEEeCCccceeeecc--
Q 005352 451 GIV-GSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQ-VRILQGPNVIGKYKGL-- 526 (701)
Q Consensus 451 l~~-gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~-I~iwd~~~~~~~~~~~-- 526 (701)
|+. |-.-|.|.+-|+...+.. .......|...|.+++++. +|.+++++|..|+ |||||..+........
T Consensus 151 LafPg~k~GqvQi~dL~~~~~~------~p~~I~AH~s~Iacv~Ln~-~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG 223 (346)
T KOG2111|consen 151 LAFPGFKTGQVQIVDLASTKPN------APSIINAHDSDIACVALNL-QGTLVATASTKGTLIRIFDTEDGTLLQELRRG 223 (346)
T ss_pred EEcCCCccceEEEEEhhhcCcC------CceEEEcccCceeEEEEcC-CccEEEEeccCcEEEEEEEcCCCcEeeeeecC
Confidence 444 556799999999876542 1122456789999999998 7999999999887 7999998766555443
Q ss_pred cCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 527 RRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 527 ~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
.....|.+++|||+..+|+++|+.|+|+|+.+....
T Consensus 224 ~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 224 VDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred CchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence 356789999999999999999999999999998765
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.8e-11 Score=119.50 Aligned_cols=203 Identities=10% Similarity=0.056 Sum_probs=156.1
Q ss_pred cCCccCeEEEEEecCCeEEEEECCCcEEEEECCCCe----eeeeecCCCCeEEEEEeeCCCCEEEEEEcC--CcEEEEeC
Q 005352 351 HGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDH----CLRVFPHSNYVTCVHFNPVDDNYFISGSID--GKVRIWAV 424 (701)
Q Consensus 351 ~~h~~~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~----~~~~~~h~~~V~~l~f~p~~~~~l~sgs~d--g~v~iwd~ 424 (701)
....+.|..++.. ++.|++|-.+|.+.+|....+- .+..+.....+..+.-++....++++|+.. ..+.|||+
T Consensus 102 ~l~~~~I~gl~~~-dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdl 180 (412)
T KOG3881|consen 102 SLGTKSIKGLKLA-DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDL 180 (412)
T ss_pred ccccccccchhhc-CCEEEEEecCCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeec
Confidence 3445667777653 5689999999999999987432 333344446677777777677788889988 88999999
Q ss_pred CCCcEEEE--------ec--CCCcEEEEEEeeC--CCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEE
Q 005352 425 LSCHVVDW--------VD--IRQIVTAVCYRPD--GQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGF 492 (701)
Q Consensus 425 ~~~~~~~~--------~~--~~~~i~~i~~sp~--g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l 492 (701)
...+.+-. .+ .+-.++.+.|-+. ...|++++.-+.+++||.+.+..... . ......+|+++
T Consensus 181 e~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~-~------fd~~E~~is~~ 253 (412)
T KOG3881|consen 181 EQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVA-Q------FDFLENPISST 253 (412)
T ss_pred ccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCccee-E------eccccCcceee
Confidence 98754421 11 1234788999987 88999999999999999996654321 1 12234779999
Q ss_pred EEecCCCCEEEEEECCCcEEEEeCCccceeee-cccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 493 QFLPQDSSKVMVSCADSQVRILQGPNVIGKYK-GLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 493 ~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~-~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
...| +++.+++|..-+.+..||++.....-. ..+..+.|.++..+|.+++|+++|-|..|+|+|+++.+
T Consensus 254 ~l~p-~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrk 323 (412)
T KOG3881|consen 254 GLTP-SGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRK 323 (412)
T ss_pred eecC-CCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccch
Confidence 9999 799999999999999999986554433 23367899999999999999999999999999999855
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.5e-11 Score=116.96 Aligned_cols=222 Identities=13% Similarity=0.139 Sum_probs=161.1
Q ss_pred ccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeee
Q 005352 247 QAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRR 326 (701)
Q Consensus 247 ~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (701)
....++|..++.. || .|++|-.+|.+.+|....+...
T Consensus 102 ~l~~~~I~gl~~~-dg-~Litc~~sG~l~~~~~k~~d~h----------------------------------------- 138 (412)
T KOG3881|consen 102 SLGTKSIKGLKLA-DG-TLITCVSSGNLQVRHDKSGDLH----------------------------------------- 138 (412)
T ss_pred ccccccccchhhc-CC-EEEEEecCCcEEEEeccCCccc-----------------------------------------
Confidence 3456777777765 34 6888889999999998755311
Q ss_pred cCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC--eEEEEECC--CcEEEEECCCCeeeeeec----------
Q 005352 327 TSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLSASID--KTVRLWRVGNDHCLRVFP---------- 392 (701)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~--~l~s~s~d--g~I~iWd~~~~~~~~~~~---------- 392 (701)
..++..+..+ ..+..+.-++.. .+++|+.. ..+.|||+.+.+.+..-+
T Consensus 139 -----------------ss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~Lr 200 (412)
T KOG3881|consen 139 -----------------SSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLR 200 (412)
T ss_pred -----------------cccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccce
Confidence 0222223323 344555555544 67779988 889999999886655433
Q ss_pred CCCCeEEEEEeeCC--CCEEEEEEcCCcEEEEeCCCCc-EE-EEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCC
Q 005352 393 HSNYVTCVHFNPVD--DNYFISGSIDGKVRIWAVLSCH-VV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDN 468 (701)
Q Consensus 393 h~~~V~~l~f~p~~--~~~l~sgs~dg~v~iwd~~~~~-~~-~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~ 468 (701)
-+-.++++.|.+ . ...|++++.-+.|++||.+.++ .+ .+--...+++++...|.++.+++|..-|.+..||++.+
T Consensus 201 VPvW~tdi~Fl~-g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~ 279 (412)
T KOG3881|consen 201 VPVWITDIRFLE-GSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGG 279 (412)
T ss_pred eeeeeccceecC-CCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCc
Confidence 234577889988 6 7889999999999999998764 33 33345788999999999999999999999999999988
Q ss_pred eeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEec
Q 005352 469 HLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTS 539 (701)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~ 539 (701)
++.. .......+.|.++..+| ...++++++-|..|||+|+.+.....+.. -...++++-+.+
T Consensus 280 kl~g-------~~~kg~tGsirsih~hp-~~~~las~GLDRyvRIhD~ktrkll~kvY-vKs~lt~il~~~ 341 (412)
T KOG3881|consen 280 KLLG-------CGLKGITGSIRSIHCHP-THPVLASCGLDRYVRIHDIKTRKLLHKVY-VKSRLTFILLRD 341 (412)
T ss_pred eeec-------cccCCccCCcceEEEcC-CCceEEeeccceeEEEeecccchhhhhhh-hhccccEEEecC
Confidence 7532 12445567899999999 67899999999999999998744333322 234455555544
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.8e-10 Score=125.54 Aligned_cols=202 Identities=16% Similarity=0.143 Sum_probs=140.0
Q ss_pred EEEcCCccCeEEEEEecCC-eEEEEEC---CCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEE-EEEcCCc--EE
Q 005352 348 HEFHGHSGEILDLSWSKNN-YLLSASI---DKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFI-SGSIDGK--VR 420 (701)
Q Consensus 348 ~~~~~h~~~I~~l~~s~~~-~l~s~s~---dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~-sgs~dg~--v~ 420 (701)
+.+..|...+...+|+|+| .|+..+. +..|.+||+.+++......+.+.+...+|+| +++.|+ +.+.++. |.
T Consensus 195 ~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SP-DG~~la~~~~~~g~~~Iy 273 (435)
T PRK05137 195 RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSP-DGRKVVMSLSQGGNTDIY 273 (435)
T ss_pred EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECC-CCCEEEEEEecCCCceEE
Confidence 3345677889999999999 6766653 4689999999887765555677788999999 888765 5555554 77
Q ss_pred EEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEec-CC--cEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecC
Q 005352 421 IWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSM-MG--DCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQ 497 (701)
Q Consensus 421 iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~-dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~ 497 (701)
+||+.+++...+..+.......+|+|||+.|+..+. +| .|+++|+.++.... +.. ....+....|+|
T Consensus 274 ~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~---lt~------~~~~~~~~~~Sp- 343 (435)
T PRK05137 274 TMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRR---ISF------GGGRYSTPVWSP- 343 (435)
T ss_pred EEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEE---eec------CCCcccCeEECC-
Confidence 789998887777666666778999999998887764 33 57788877654321 110 123456678999
Q ss_pred CCCEEEEEECC---CcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCC------CcEEEEeCCCCC
Q 005352 498 DSSKVMVSCAD---SQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGED------SNVYMWNCIGHE 562 (701)
Q Consensus 498 ~~~~l~~~s~d---g~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~D------g~I~iWd~~~~~ 562 (701)
+++.|+....+ ..|.+||.......... ....+..+.|+|||++|+..+.+ ..++++++.++.
T Consensus 344 dG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt--~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~ 415 (435)
T PRK05137 344 RGDLIAFTKQGGGQFSIGVMKPDGSGERILT--SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRN 415 (435)
T ss_pred CCCEEEEEEcCCCceEEEEEECCCCceEecc--CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCc
Confidence 66777665543 36788887533222211 22346778999999998776543 257778876554
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.6e-11 Score=115.95 Aligned_cols=264 Identities=17% Similarity=0.287 Sum_probs=170.0
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCC
Q 005352 250 DGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSE 329 (701)
Q Consensus 250 ~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (701)
..-|.++.|...|.+||||..+|.|.++.-..... .++.... .+.. +..+
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~-~ey~~~t------~fqs-hepE---------------------- 74 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYK-GEYNFQT------EFQS-HEPE---------------------- 74 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccc-cceeeee------eeec-cCcc----------------------
Confidence 45689999999999999999999999997543321 0110000 0000 0000
Q ss_pred ccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC---eEEEEECCCcEEEEECCCCe--------------------
Q 005352 330 SACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN---YLLSASIDKTVRLWRVGNDH-------------------- 386 (701)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~---~l~s~s~dg~I~iWd~~~~~-------------------- 386 (701)
| .-+..+ .-...|..+.|.+++ .++..+.|++|++|.+....
T Consensus 75 ----------F----DYLkSl-eieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~l 139 (433)
T KOG1354|consen 75 ----------F----DYLKSL-EIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSL 139 (433)
T ss_pred ----------c----chhhhh-hhhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCcccee
Confidence 0 000000 123468889999876 88888999999999875331
Q ss_pred ---------------eeeeec--CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCC----cEEEEecC-----CCcEE
Q 005352 387 ---------------CLRVFP--HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSC----HVVDWVDI-----RQIVT 440 (701)
Q Consensus 387 ---------------~~~~~~--h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~----~~~~~~~~-----~~~i~ 440 (701)
|.+.+. |.--|++|.++. |...++++. |-.|.+|++.-. .++....+ ..-|+
T Consensus 140 r~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~Ns-D~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVIT 217 (433)
T KOG1354|consen 140 RLPVEGRHDLEVEASPRRVYANAHTYHINSISVNS-DKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVIT 217 (433)
T ss_pred eceeeccccceeeeeeeeeccccceeEeeeeeecC-ccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHh
Confidence 111222 777799999998 888888775 788999988632 23333322 34589
Q ss_pred EEEEeeC-CCeEEEEecCCcEEEEECCCCeeeeee-----eEE---eecccCCCCCCeeEEEEecCCCCEEEEEECCCcE
Q 005352 441 AVCYRPD-GQGGIVGSMMGDCRFYNVSDNHLELDA-----EIC---VHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQV 511 (701)
Q Consensus 441 ~i~~sp~-g~~l~~gs~dg~v~i~d~~~~~~~~~~-----~~~---~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I 511 (701)
+..|+|. .+.++-.+..|+|++-|++...+-... ... .......-...|..+.|++ +|.++++-.. -+|
T Consensus 218 saEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~-sGryilsRDy-ltv 295 (433)
T KOG1354|consen 218 SAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSH-SGRYILSRDY-LTV 295 (433)
T ss_pred hhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEcc-CCcEEEEecc-cee
Confidence 9999994 567777888999999999954321110 000 0001111235788999999 6788776543 589
Q ss_pred EEEeCC---ccceeeeccc----------CCCCe---EEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 512 RILQGP---NVIGKYKGLR----------RSGNQ---LSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 512 ~iwd~~---~~~~~~~~~~----------~~~~v---~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
++||+. .....++.+. ....| ..++|+-++.+++||+....++++++..+.
T Consensus 296 k~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 296 KLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred EEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence 999985 2233333321 11222 468899999999999999999999977665
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.36 E-value=8.2e-10 Score=116.28 Aligned_cols=273 Identities=16% Similarity=0.185 Sum_probs=169.3
Q ss_pred cccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCce
Q 005352 218 FCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSC 297 (701)
Q Consensus 218 ~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~ 297 (701)
+-..++.|.|.|..... . ..++..+...-..+.|+|||+++.+++.||.|.++|+.+.+.+.++..
T Consensus 11 ~~~~~~~v~viD~~t~~--~-----~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~------- 76 (369)
T PF02239_consen 11 VERGSGSVAVIDGATNK--V-----VARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV------- 76 (369)
T ss_dssp EEGGGTEEEEEETTT-S--E-----EEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE--------
T ss_pred EecCCCEEEEEECCCCe--E-----EEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec-------
Confidence 35567899999854321 1 123333333344578999999999999999999999999875544421
Q ss_pred eEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEE-ECCC
Q 005352 298 IYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSA-SIDK 375 (701)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~-s~dg 375 (701)
......++++++| +++++ ...+
T Consensus 77 --------------------------------------------------------G~~~~~i~~s~DG~~~~v~n~~~~ 100 (369)
T PF02239_consen 77 --------------------------------------------------------GGNPRGIAVSPDGKYVYVANYEPG 100 (369)
T ss_dssp --------------------------------------------------------SSEEEEEEE--TTTEEEEEEEETT
T ss_pred --------------------------------------------------------CCCcceEEEcCCCCEEEEEecCCC
Confidence 1235688999999 66655 5689
Q ss_pred cEEEEECCCCeeeeeec--------CCCCeEEEEEeeCCCCEEEEEEcC-CcEEEEeCCCCcE--EEEecCCCcEEEEEE
Q 005352 376 TVRLWRVGNDHCLRVFP--------HSNYVTCVHFNPVDDNYFISGSID-GKVRIWAVLSCHV--VDWVDIRQIVTAVCY 444 (701)
Q Consensus 376 ~I~iWd~~~~~~~~~~~--------h~~~V~~l~f~p~~~~~l~sgs~d-g~v~iwd~~~~~~--~~~~~~~~~i~~i~~ 444 (701)
.+.++|.++.+.++.+. ....+..|..+| ....++..-.| +.|.+.|...... ..............|
T Consensus 101 ~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~-~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~ 179 (369)
T PF02239_consen 101 TVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASP-GRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGF 179 (369)
T ss_dssp EEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-S-SSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE
T ss_pred ceeEeccccccceeecccccccccccCCCceeEEecC-CCCEEEEEEccCCeEEEEEeccccccceeeeccccccccccc
Confidence 99999999999998875 234677888888 66656555554 7888888776543 355566777889999
Q ss_pred eeCCCeEEEE-ecCCcEEEEECCCCeeeeeeeE-------------------------------Eeecc-c---------
Q 005352 445 RPDGQGGIVG-SMMGDCRFYNVSDNHLELDAEI-------------------------------CVHSK-K--------- 482 (701)
Q Consensus 445 sp~g~~l~~g-s~dg~v~i~d~~~~~~~~~~~~-------------------------------~~~~~-~--------- 482 (701)
+|++++++++ ...+.+-++|..+.++...... ..... .
T Consensus 180 dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~w 259 (369)
T PF02239_consen 180 DPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAW 259 (369)
T ss_dssp -TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBT
T ss_pred CcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcC
Confidence 9999988775 4567888999887765432210 00000 0
Q ss_pred ------CCCCCCeeEEEEecCCCCEEEEE----ECCCcEEEEeCCccceeeeccc-CCCCeEEEEEecCCCEEEEEeC--
Q 005352 483 ------KAPCKRITGFQFLPQDSSKVMVS----CADSQVRILQGPNVIGKYKGLR-RSGNQLSACFTSDGKHIVSAGE-- 549 (701)
Q Consensus 483 ------~~~~~~i~~l~~~p~~~~~l~~~----s~dg~I~iwd~~~~~~~~~~~~-~~~~v~~l~~s~dg~~l~sgs~-- 549 (701)
...... ..+..+| ++.++.+. ...+.|.++|..+......... ....+..+.|+++|+++..+..
T Consensus 260 kvv~~I~~~G~g-lFi~thP-~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~ 337 (369)
T PF02239_consen 260 KVVKTIPTQGGG-LFIKTHP-DSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDG 337 (369)
T ss_dssp SEEEEEE-SSSS---EE--T-T-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--
T ss_pred eEEEEEECCCCc-ceeecCC-CCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecC
Confidence 000111 3455677 67777776 4468999999998754443321 2345999999999997765543
Q ss_pred CCcEEEEeCCCCCC
Q 005352 550 DSNVYMWNCIGHEE 563 (701)
Q Consensus 550 Dg~I~iWd~~~~~~ 563 (701)
++.|.+||..+.++
T Consensus 338 ~~~i~v~D~~Tl~~ 351 (369)
T PF02239_consen 338 NGAIVVYDAKTLKE 351 (369)
T ss_dssp TTEEEEEETTTTEE
T ss_pred CCEEEEEECCCcEE
Confidence 34699999988764
|
... |
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.36 E-value=9.5e-10 Score=106.13 Aligned_cols=197 Identities=16% Similarity=0.197 Sum_probs=135.4
Q ss_pred CccCeEEEEEecCCeEEEEECCCcEEEEECC-CCeeeeeec---CCCCeEEEEEeeCCCCEEEE-EEcCCcEEEEeCCCC
Q 005352 353 HSGEILDLSWSKNNYLLSASIDKTVRLWRVG-NDHCLRVFP---HSNYVTCVHFNPVDDNYFIS-GSIDGKVRIWAVLSC 427 (701)
Q Consensus 353 h~~~I~~l~~s~~~~l~s~s~dg~I~iWd~~-~~~~~~~~~---h~~~V~~l~f~p~~~~~l~s-gs~dg~v~iwd~~~~ 427 (701)
...+|.++.+.++..++ . ..+.|.||... +-+.+..+. .+....+++-.. +..+||. |-.-|.|+|-|+...
T Consensus 93 f~~~I~~V~l~r~riVv-v-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~-~k~~LafPg~k~GqvQi~dL~~~ 169 (346)
T KOG2111|consen 93 FNSEIKAVKLRRDRIVV-V-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTS-NKSLLAFPGFKTGQVQIVDLAST 169 (346)
T ss_pred eccceeeEEEcCCeEEE-E-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCC-CceEEEcCCCccceEEEEEhhhc
Confidence 34689999998775222 2 35789999987 445555554 233333333222 3333443 345689999999876
Q ss_pred cE---EEEecCCCcEEEEEEeeCCCeEEEEecCCc-EEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEE
Q 005352 428 HV---VDWVDIRQIVTAVCYRPDGQGGIVGSMMGD-CRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVM 503 (701)
Q Consensus 428 ~~---~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~-v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~ 503 (701)
+. .....|...|.+++.+-+|..+|+++..|+ |||||..++....+.. .......|.+++|+| +..+|+
T Consensus 170 ~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~R------RG~d~A~iy~iaFSp-~~s~La 242 (346)
T KOG2111|consen 170 KPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELR------RGVDRADIYCIAFSP-NSSWLA 242 (346)
T ss_pred CcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeee------cCCchheEEEEEeCC-CccEEE
Confidence 65 677889999999999999999999999998 7999999998776532 344557899999999 799999
Q ss_pred EEECCCcEEEEeCCccceeee------------------------cccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 005352 504 VSCADSQVRILQGPNVIGKYK------------------------GLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCI 559 (701)
Q Consensus 504 ~~s~dg~I~iwd~~~~~~~~~------------------------~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~ 559 (701)
++|..|+|+|+.++....... ..-..+...-++|-.+-+.++..+.||.-+=+.+.
T Consensus 243 vsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy~k~~f~ 322 (346)
T KOG2111|consen 243 VSSDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICADGSYYKFKFD 322 (346)
T ss_pred EEcCCCeEEEEEeecCCCCccccccccccccccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEEeCCcEEEEEec
Confidence 999999999998764221111 01123344555666554555555667765544443
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.2e-10 Score=124.33 Aligned_cols=219 Identities=17% Similarity=0.171 Sum_probs=136.3
Q ss_pred eccCCCcEEEEEEccCCCEEEEEeCC---CcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeE
Q 005352 246 IQAHDGSILTMKFSPDGQYLASAGDD---GVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (701)
Q Consensus 246 l~~H~~~I~~l~fspdg~~Lasgs~D---g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (701)
+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++...
T Consensus 191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~------------------------------------ 234 (427)
T PRK02889 191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV------------------------------------ 234 (427)
T ss_pred eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE------------------------------------
Confidence 44577889999999999999887643 358999987764211
Q ss_pred EeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEE-EEECCCcEEEEE--CCCCeeeeeecCCCCeE
Q 005352 323 SLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLL-SASIDKTVRLWR--VGNDHCLRVFPHSNYVT 398 (701)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~-s~s~dg~I~iWd--~~~~~~~~~~~h~~~V~ 398 (701)
+....+.+...+|+|++ .|+ +.+.++...||. +..+.......+.....
T Consensus 235 ---------------------------l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~ 287 (427)
T PRK02889 235 ---------------------------VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDT 287 (427)
T ss_pred ---------------------------eecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECCCCCCCCc
Confidence 11122345578999999 554 667788766664 55554433333555567
Q ss_pred EEEEeeCCCCEEEEEEc-CCcEEEEe--CCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecCC---cEEEEECCCCeeee
Q 005352 399 CVHFNPVDDNYFISGSI-DGKVRIWA--VLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMG---DCRFYNVSDNHLEL 472 (701)
Q Consensus 399 ~l~f~p~~~~~l~sgs~-dg~v~iwd--~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg---~v~i~d~~~~~~~~ 472 (701)
...|+| +++.|+..+. +|...||. +.++...............+|+|+|++|+..+.++ .|.+||+.++....
T Consensus 288 ~~~wSp-DG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~ 366 (427)
T PRK02889 288 EPFFSP-DGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA 366 (427)
T ss_pred CeEEcC-CCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE
Confidence 789999 9988876654 45666664 45555443333333345678999999998877654 59999998765432
Q ss_pred eeeEEeecccCCCCCCeeEEEEecCCCCEEEEEEC-CCc--EEEEeCCccceeeecccCCCCeEEEEEecC
Q 005352 473 DAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCA-DSQ--VRILQGPNVIGKYKGLRRSGNQLSACFTSD 540 (701)
Q Consensus 473 ~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~-dg~--I~iwd~~~~~~~~~~~~~~~~v~~l~~s~d 540 (701)
. .. ........|+| ++..|+.++. .+. +.+.+..... ......+.+.+...+|+|-
T Consensus 367 l-----t~-----~~~~~~p~~sp-dg~~l~~~~~~~g~~~l~~~~~~g~~-~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 367 L-----TD-----TTRDESPSFAP-NGRYILYATQQGGRSVLAAVSSDGRI-KQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred c-----cC-----CCCccCceECC-CCCEEEEEEecCCCEEEEEEECCCCc-eEEeecCCCCCCCCccCCC
Confidence 1 11 11235678999 5666666554 333 4455553221 1111224455666777763
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.9e-10 Score=114.72 Aligned_cols=306 Identities=16% Similarity=0.202 Sum_probs=185.7
Q ss_pred cCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEE-----eC-----CCcEEEEEee
Q 005352 211 LNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASA-----GD-----DGVVRLWQVV 280 (701)
Q Consensus 211 ~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasg-----s~-----Dg~I~iWd~~ 280 (701)
.++..+...+.++.++|++....... +.--...++++.|+|-|.||.|- -. ...+++|++.
T Consensus 43 S~~G~lfA~~~~~~v~i~~~~~~~~~---------lt~~~~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~ve 113 (566)
T KOG2315|consen 43 SNNGRLFAYSDNQVVKVFEIATLKVV---------LCVELKKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVE 113 (566)
T ss_pred cCCCcEEEEEcCCeEEEEEccCCcEE---------EEeccceeeeeeecccccccccccccccccCCCCCCCceeeeeec
Confidence 33445555677888999986543211 11122268999999999999873 11 2357799999
Q ss_pred cCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEE
Q 005352 281 EDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDL 360 (701)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l 360 (701)
++.....+........+..|..+...... ........+....++ .+.+ .-|...|..+
T Consensus 114 t~~~~s~~q~k~Q~~W~~qfs~dEsl~ar-----------------lv~nev~f~~~~~f~---~~~~--kl~~~~i~~f 171 (566)
T KOG2315|consen 114 TGVQRSQIQKKMQNGWVPQFSIDESLAAR-----------------LVSNEVQFYDLGSFK---TIQH--KLSVSGITML 171 (566)
T ss_pred cceehhheehhhhcCcccccccchhhhhh-----------------hhcceEEEEecCCcc---ceee--eeeccceeeE
Confidence 86544444333222223333332211100 000111111222111 1222 2356789999
Q ss_pred EEecCC---eEEE-----EECCCcEEEEECCCCeeee-----eecCCCCeEEEEEeeCCCCEEEEEEc-----------C
Q 005352 361 SWSKNN---YLLS-----ASIDKTVRLWRVGNDHCLR-----VFPHSNYVTCVHFNPVDDNYFISGSI-----------D 416 (701)
Q Consensus 361 ~~s~~~---~l~s-----~s~dg~I~iWd~~~~~~~~-----~~~h~~~V~~l~f~p~~~~~l~sgs~-----------d 416 (701)
.++|.. .+++ .+.-+.|+||.......-. .|-..+.| .+.|++....+|+.++. .
T Consensus 172 ~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkv-qm~WN~~gt~LLvLastdVDktn~SYYGE 250 (566)
T KOG2315|consen 172 SLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKV-QMKWNKLGTALLVLASTDVDKTNASYYGE 250 (566)
T ss_pred EecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhcccccccee-EEEeccCCceEEEEEEEeecCCCcccccc
Confidence 999974 3432 3455679999876332222 22122333 46677633334443332 2
Q ss_pred CcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEE--EecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEE
Q 005352 417 GKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIV--GSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQF 494 (701)
Q Consensus 417 g~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~--gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 494 (701)
.++++.++....+..-....++|.+++|+|+++.+++ |-.-..+.|||++..-. . ....++-+.+-|
T Consensus 251 q~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v-~----------df~egpRN~~~f 319 (566)
T KOG2315|consen 251 QTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPV-F----------DFPEGPRNTAFF 319 (566)
T ss_pred ceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEe-E----------eCCCCCccceEE
Confidence 4688888885555555666899999999999987766 55677899999985432 1 112355677889
Q ss_pred ecCCCCEEEEEEC---CCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeC------CCcEEEEeCCCCC
Q 005352 495 LPQDSSKVMVSCA---DSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGE------DSNVYMWNCIGHE 562 (701)
Q Consensus 495 ~p~~~~~l~~~s~---dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~------Dg~I~iWd~~~~~ 562 (701)
+| .+++++.++. .|.|-|||+.+.....+. ....-+-+.|+|||++|+|++. |+.++||++....
T Consensus 320 np-~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~--~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~ 393 (566)
T KOG2315|consen 320 NP-HGNIILLAGFGNLPGDMEVWDVPNRKLIAKF--KAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSL 393 (566)
T ss_pred CC-CCCEEEEeecCCCCCceEEEeccchhhcccc--ccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCce
Confidence 99 6777776665 589999999885555444 3344566889999999999864 7889999987654
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.7e-10 Score=123.57 Aligned_cols=203 Identities=12% Similarity=0.091 Sum_probs=137.2
Q ss_pred eEEEcCCccCeEEEEEecCC-eEEEEE---CCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEE-EcCC--cE
Q 005352 347 LHEFHGHSGEILDLSWSKNN-YLLSAS---IDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISG-SIDG--KV 419 (701)
Q Consensus 347 ~~~~~~h~~~I~~l~~s~~~-~l~s~s---~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sg-s~dg--~v 419 (701)
.+.+..+...+...+|+|+| .|+..+ .+..|.+|++.+++........+.+...+|+| +++.|+.. ..+| .|
T Consensus 191 ~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SP-DG~~La~~~~~~g~~~I 269 (429)
T PRK03629 191 QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSP-DGSKLAFALSKTGSLNL 269 (429)
T ss_pred CEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECC-CCCEEEEEEcCCCCcEE
Confidence 34455567789999999999 666543 24579999999887655444445566789999 88887754 4444 48
Q ss_pred EEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecC-Cc--EEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEec
Q 005352 420 RIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMM-GD--CRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLP 496 (701)
Q Consensus 420 ~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~d-g~--v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p 496 (701)
++||+.+++..........+....|+|+|+.|+..+.. +. |.++++.++.... +. ..........|+|
T Consensus 270 ~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~---lt------~~~~~~~~~~~Sp 340 (429)
T PRK03629 270 YVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQR---IT------WEGSQNQDADVSS 340 (429)
T ss_pred EEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEE---ee------cCCCCccCEEECC
Confidence 89999998887776666678899999999988777654 44 4444665543221 11 1112345688999
Q ss_pred CCCCEEEEEECC---CcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCc---EEEEeCCCCC
Q 005352 497 QDSSKVMVSCAD---SQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSN---VYMWNCIGHE 562 (701)
Q Consensus 497 ~~~~~l~~~s~d---g~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~---I~iWd~~~~~ 562 (701)
++..|+..+.+ ..|.+||+.+.....-. .........|+|||++|+.++.++. +++++++...
T Consensus 341 -DG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt--~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~ 409 (429)
T PRK03629 341 -DGKFMVMVSSNGGQQHIAKQDLATGGVQVLT--DTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRF 409 (429)
T ss_pred -CCCEEEEEEccCCCceEEEEECCCCCeEEeC--CCCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCC
Confidence 66766665543 35888897654322211 1122346789999999999988765 6777875543
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.1e-09 Score=109.28 Aligned_cols=273 Identities=14% Similarity=0.174 Sum_probs=174.4
Q ss_pred cceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeC----CCcEEEEEeecC-eeeeeecCCCCCCc
Q 005352 222 VQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGD----DGVVRLWQVVED-ERLTEVDIPEIDPS 296 (701)
Q Consensus 222 d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~----Dg~I~iWd~~~~-~~~~~~~~~~~~~~ 296 (701)
.+.|.+|.++.....+..... +. -......|+++|++++|.++.+ ++.|..|.+... ..+..
T Consensus 12 ~~gI~~~~~d~~~g~l~~~~~---~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~--------- 78 (345)
T PF10282_consen 12 GGGIYVFRFDEETGTLTLVQT---VA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTL--------- 78 (345)
T ss_dssp STEEEEEEEETTTTEEEEEEE---EE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEE---------
T ss_pred CCcEEEEEEcCCCCCceEeee---ec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEE---------
Confidence 378999998655544443321 11 2344567899999999998877 568989988764 11111
Q ss_pred eeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEE-CC
Q 005352 297 CIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSAS-ID 374 (701)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s-~d 374 (701)
+.........-..++++|++ +|+++. .+
T Consensus 79 --------------------------------------------------~~~~~~~g~~p~~i~~~~~g~~l~vany~~ 108 (345)
T PF10282_consen 79 --------------------------------------------------LNSVPSGGSSPCHIAVDPDGRFLYVANYGG 108 (345)
T ss_dssp --------------------------------------------------EEEEEESSSCEEEEEECTTSSEEEEEETTT
T ss_pred --------------------------------------------------eeeeccCCCCcEEEEEecCCCEEEEEEccC
Confidence 11111122345578899999 776666 58
Q ss_pred CcEEEEECCC-Ceeeee---ec-----------CCCCeEEEEEeeCCCCEEEEEEc-CCcEEEEeCCCCc--EEE----E
Q 005352 375 KTVRLWRVGN-DHCLRV---FP-----------HSNYVTCVHFNPVDDNYFISGSI-DGKVRIWAVLSCH--VVD----W 432 (701)
Q Consensus 375 g~I~iWd~~~-~~~~~~---~~-----------h~~~V~~l~f~p~~~~~l~sgs~-dg~v~iwd~~~~~--~~~----~ 432 (701)
|.|.++++.. +..... +. ......++.|+| +++++++... ...|.+|++.... +.. .
T Consensus 109 g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~ 187 (345)
T PF10282_consen 109 GSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIK 187 (345)
T ss_dssp TEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEE
T ss_pred CeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-CCCEEEEEecCCCEEEEEEEeCCCceEEEeeccc
Confidence 9999999987 333222 21 234578999999 8888877653 3579999997654 322 2
Q ss_pred ecCCCcEEEEEEeeCCCeEEEEec-CCcEEEEECC--CCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEE-CC
Q 005352 433 VDIRQIVTAVCYRPDGQGGIVGSM-MGDCRFYNVS--DNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSC-AD 508 (701)
Q Consensus 433 ~~~~~~i~~i~~sp~g~~l~~gs~-dg~v~i~d~~--~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s-~d 508 (701)
.........+.|+|+++++++... ++.|.+|++. ++.+.....+...............+.++| ++++|+++. ..
T Consensus 188 ~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~isp-dg~~lyvsnr~~ 266 (345)
T PF10282_consen 188 VPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISP-DGRFLYVSNRGS 266 (345)
T ss_dssp CSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-T-TSSEEEEEECTT
T ss_pred cccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEec-CCCEEEEEeccC
Confidence 345567899999999998877654 7789999998 554443333332222222223688899999 566666655 57
Q ss_pred CcEEEEeCCcc--ce-ee-ecccCCCCeEEEEEecCCCEEEEEe-CCCcEEEEeCC
Q 005352 509 SQVRILQGPNV--IG-KY-KGLRRSGNQLSACFTSDGKHIVSAG-EDSNVYMWNCI 559 (701)
Q Consensus 509 g~I~iwd~~~~--~~-~~-~~~~~~~~v~~l~~s~dg~~l~sgs-~Dg~I~iWd~~ 559 (701)
+.|.+|++... .. .. ...........++++|+|++|+++. .++.|.+|+++
T Consensus 267 ~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 267 NSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp TEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred CEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 88999998421 11 11 1111344578999999999999887 55789999875
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.5e-11 Score=116.12 Aligned_cols=248 Identities=14% Similarity=0.245 Sum_probs=176.8
Q ss_pred ceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeec-CeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeE
Q 005352 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVE-DERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (701)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (701)
+.+.||.+.|+....-|-..-+++.+.|.++|||--.+ ++.-..
T Consensus 18 ~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wps----------------------------------- 62 (404)
T KOG1409|consen 18 SKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPS----------------------------------- 62 (404)
T ss_pred hhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCch-----------------------------------
Confidence 45778999999998888777899999999999996433 221100
Q ss_pred EeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCC----eeeeee-cCCCC
Q 005352 323 SLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGND----HCLRVF-PHSNY 396 (701)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~----~~~~~~-~h~~~ 396 (701)
+ ...-..+++++.+.+.. .|+.|-.+|++.-+.+... ..++.+ .|...
T Consensus 63 ------------------------I--~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~ 116 (404)
T KOG1409|consen 63 ------------------------I--YHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQAR 116 (404)
T ss_pred ------------------------h--hhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcc
Confidence 0 01234578888888888 8888889999988866432 233333 38999
Q ss_pred eEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeE
Q 005352 397 VTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEI 476 (701)
Q Consensus 397 V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~ 476 (701)
|..+-|+- ....+++.+.|..+.---.+.+..+.-.....+.+++.+.-. +..+|...|.|..-.+....+.
T Consensus 117 v~~~if~~-~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~----- 188 (404)
T KOG1409|consen 117 VSAIVFSL-THEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQ----- 188 (404)
T ss_pred eeeEEecC-CceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeE--EEEecccccceEEEEEeecCCc-----
Confidence 99999997 788899999888765444444443321111122222222222 5667777787777666544432
Q ss_pred EeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCc-cceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEE
Q 005352 477 CVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN-VIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYM 555 (701)
Q Consensus 477 ~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~-~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~i 555 (701)
+......+...++++.|.| ....+++|..|..+.+||+.- ....+...+|...|..++..+--+.|++++.||.|.+
T Consensus 189 -~i~~~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~ 266 (404)
T KOG1409|consen 189 -LITTFNGHTGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVV 266 (404)
T ss_pred -eEEEEcCcccceEEEEEcC-CCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEE
Confidence 2334566778999999999 789999999999999999873 3344555668888999988888899999999999999
Q ss_pred EeCCCCC
Q 005352 556 WNCIGHE 562 (701)
Q Consensus 556 Wd~~~~~ 562 (701)
|+++...
T Consensus 267 w~mn~~r 273 (404)
T KOG1409|consen 267 WNMNVKR 273 (404)
T ss_pred Eecccee
Confidence 9998754
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.1e-10 Score=123.59 Aligned_cols=204 Identities=15% Similarity=0.147 Sum_probs=139.4
Q ss_pred CCeEEEcCCccCeEEEEEecCC-eEEEEECC---CcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEE-EEEcCC--
Q 005352 345 KPLHEFHGHSGEILDLSWSKNN-YLLSASID---KTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFI-SGSIDG-- 417 (701)
Q Consensus 345 ~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~d---g~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~-sgs~dg-- 417 (701)
...+.+..|...+...+|+|++ .|+..+.. ..|.+||+.+++........+...+.+|+| +++.|+ +.+.+|
T Consensus 194 ~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~Sp-DG~~l~~~~s~~g~~ 272 (433)
T PRK04922 194 YNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSP-DGRRLALTLSRDGNP 272 (433)
T ss_pred CCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECC-CCCEEEEEEeCCCCc
Confidence 3445566677889999999999 77776643 469999998887655544555566889999 888765 445555
Q ss_pred cEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEec-CCc--EEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEE
Q 005352 418 KVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSM-MGD--CRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQF 494 (701)
Q Consensus 418 ~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~-dg~--v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 494 (701)
.|++||+.+++......+.......+|+|||+.|+..+. +|. |.++++.+++... +.. ........+|
T Consensus 273 ~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~---lt~------~g~~~~~~~~ 343 (433)
T PRK04922 273 EIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER---LTF------QGNYNARASV 343 (433)
T ss_pred eEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE---eec------CCCCccCEEE
Confidence 599999999887766666556678899999998887764 444 6666766554321 111 1122346899
Q ss_pred ecCCCCEEEEEECCC---cEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCC---CcEEEEeCCCC
Q 005352 495 LPQDSSKVMVSCADS---QVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGED---SNVYMWNCIGH 561 (701)
Q Consensus 495 ~p~~~~~l~~~s~dg---~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~D---g~I~iWd~~~~ 561 (701)
+| +++.++..+.++ .|.+||..+....... +........|+|||++|+..+.+ +.|+++++...
T Consensus 344 Sp-DG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt--~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~ 413 (433)
T PRK04922 344 SP-DGKKIAMVHGSGGQYRIAVMDLSTGSVRTLT--PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR 413 (433)
T ss_pred CC-CCCEEEEEECCCCceeEEEEECCCCCeEECC--CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 99 677776655432 6899998654433211 22244567899999988877653 45788887544
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.5e-10 Score=109.19 Aligned_cols=149 Identities=14% Similarity=0.277 Sum_probs=102.6
Q ss_pred EEEEeeCCCCEEEEEEc----------CCcEEEEeC--CCCcEEEE-ecCCCcEEEEEEeeCCCeEEEE--ecCCcEEEE
Q 005352 399 CVHFNPVDDNYFISGSI----------DGKVRIWAV--LSCHVVDW-VDIRQIVTAVCYRPDGQGGIVG--SMMGDCRFY 463 (701)
Q Consensus 399 ~l~f~p~~~~~l~sgs~----------dg~v~iwd~--~~~~~~~~-~~~~~~i~~i~~sp~g~~l~~g--s~dg~v~i~ 463 (701)
.+.|+| .+++|+.-.. -+...+|.+ ........ ....++|.+++|+|+|+.|++. ..++.|.+|
T Consensus 10 ~~~W~~-~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 10 KLHWQP-SGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEecc-cCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 467777 6666554332 123445544 33333222 2345579999999999987664 456799999
Q ss_pred ECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEEC---CCcEEEEeCCccceeeecccCCCCeEEEEEecC
Q 005352 464 NVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCA---DSQVRILQGPNVIGKYKGLRRSGNQLSACFTSD 540 (701)
Q Consensus 464 d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~---dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~d 540 (701)
|++.... . .. ....+..+.|+| +++++++++. .|.|.+||..+....... ....++.++|+|+
T Consensus 89 d~~~~~i-~----~~------~~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~--~~~~~t~~~WsPd 154 (194)
T PF08662_consen 89 DVKGKKI-F----SF------GTQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVRKKKKISTF--EHSDATDVEWSPD 154 (194)
T ss_pred cCcccEe-E----ee------cCCCceEEEECC-CCCEEEEEEccCCCcEEEEEECCCCEEeecc--ccCcEEEEEEcCC
Confidence 9973221 1 11 124577899999 7888888775 467999999976665554 3345789999999
Q ss_pred CCEEEEEeC------CCcEEEEeCCCCC
Q 005352 541 GKHIVSAGE------DSNVYMWNCIGHE 562 (701)
Q Consensus 541 g~~l~sgs~------Dg~I~iWd~~~~~ 562 (701)
|++|++++. |+.++||++....
T Consensus 155 Gr~~~ta~t~~r~~~dng~~Iw~~~G~~ 182 (194)
T PF08662_consen 155 GRYLATATTSPRLRVDNGFKIWSFQGRL 182 (194)
T ss_pred CCEEEEEEeccceeccccEEEEEecCeE
Confidence 999999864 7889999987543
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=7.9e-10 Score=121.97 Aligned_cols=144 Identities=24% Similarity=0.389 Sum_probs=117.5
Q ss_pred CccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCC
Q 005352 212 NEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIP 291 (701)
Q Consensus 212 ~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~ 291 (701)
++=++++|+.-+.|.+|......+. ..+.||.+.|..+.|+.||+|+++++.|.++|+|++++.+..
T Consensus 144 ~~~~i~~gsv~~~iivW~~~~dn~p-------~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~------ 210 (967)
T KOG0974|consen 144 EELYIASGSVFGEIIVWKPHEDNKP-------IRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVL------ 210 (967)
T ss_pred cEEEEEeccccccEEEEeccccCCc-------ceecccCCceEEEEEccCCcEEEEEecCcceeeeeccccccc------
Confidence 3445677889999999987632222 157899999999999999999999999999999999987522
Q ss_pred CCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCCeEEEE
Q 005352 292 EIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSA 371 (701)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~l~s~ 371 (701)
....-+|+..|..+++.|+ +++|+
T Consensus 211 -------------------------------------------------------~~~~fgHsaRvw~~~~~~n-~i~t~ 234 (967)
T KOG0974|consen 211 -------------------------------------------------------GCTGFGHSARVWACCFLPN-RIITV 234 (967)
T ss_pred -------------------------------------------------------CcccccccceeEEEEeccc-eeEEe
Confidence 1233579999999999999 99999
Q ss_pred ECCCcEEEEECCCCeeeeeec-C-CCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCC
Q 005352 372 SIDKTVRLWRVGNDHCLRVFP-H-SNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS 426 (701)
Q Consensus 372 s~dg~I~iWd~~~~~~~~~~~-h-~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~ 426 (701)
+.|.+.++|+....+.. .+. | ...+..++..+ +....++++.|+.+++||+..
T Consensus 235 gedctcrvW~~~~~~l~-~y~~h~g~~iw~~~~~~-~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 235 GEDCTCRVWGVNGTQLE-VYDEHSGKGIWKIAVPI-GVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred ccceEEEEEecccceeh-hhhhhhhcceeEEEEcC-CceEEEeeccCcchhhhhhhc
Confidence 99999999976544443 554 4 45789999988 888999999999999998754
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.29 E-value=7.1e-10 Score=120.71 Aligned_cols=197 Identities=15% Similarity=0.139 Sum_probs=133.7
Q ss_pred eeccCCCcEEEEEEccCCCEEEEEeCC---CcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceee
Q 005352 245 EIQAHDGSILTMKFSPDGQYLASAGDD---GVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISIL 321 (701)
Q Consensus 245 ~l~~H~~~I~~l~fspdg~~Lasgs~D---g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (701)
.+..+...+...+|+|||++||.+..+ ..|.+||+.+++..
T Consensus 184 ~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~------------------------------------ 227 (417)
T TIGR02800 184 TITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE------------------------------------ 227 (417)
T ss_pred EeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE------------------------------------
Confidence 345577789999999999999987654 47999998765321
Q ss_pred EEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEE-EEECCC--cEEEEECCCCeeeeeecCCCCe
Q 005352 322 KSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLL-SASIDK--TVRLWRVGNDHCLRVFPHSNYV 397 (701)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~-s~s~dg--~I~iWd~~~~~~~~~~~h~~~V 397 (701)
.+..+...+.+++|+|++ .|+ +.+.++ .|.+||+.+++......+....
T Consensus 228 ---------------------------~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~ 280 (417)
T TIGR02800 228 ---------------------------KVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGID 280 (417)
T ss_pred ---------------------------EeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCCCCCCC
Confidence 111233445668999998 554 455444 5889999888765555555556
Q ss_pred EEEEEeeCCCCEEEEEEcC-C--cEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecCC---cEEEEECCCCeee
Q 005352 398 TCVHFNPVDDNYFISGSID-G--KVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMG---DCRFYNVSDNHLE 471 (701)
Q Consensus 398 ~~l~f~p~~~~~l~sgs~d-g--~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg---~v~i~d~~~~~~~ 471 (701)
....|+| +++.|+..+.. + .|.++|+.+++...+......+..+.|+|+|++++.++.++ .|.+||+.++...
T Consensus 281 ~~~~~s~-dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~ 359 (417)
T TIGR02800 281 TEPSWSP-DGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER 359 (417)
T ss_pred CCEEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE
Confidence 6778999 88888766543 3 58888988887666655666778889999999999988776 7889998875432
Q ss_pred eeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCC---cEEEEeC
Q 005352 472 LDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADS---QVRILQG 516 (701)
Q Consensus 472 ~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg---~I~iwd~ 516 (701)
.. .. ........|+| ++..|+..+.++ .+++.+.
T Consensus 360 ~l-----~~-----~~~~~~p~~sp-dg~~l~~~~~~~~~~~l~~~~~ 396 (417)
T TIGR02800 360 VL-----TD-----TGLDESPSFAP-NGRMILYATTRGGRGVLGLVST 396 (417)
T ss_pred Ec-----cC-----CCCCCCceECC-CCCEEEEEEeCCCcEEEEEEEC
Confidence 11 10 01123457899 566666655543 3444443
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.1e-09 Score=115.31 Aligned_cols=195 Identities=12% Similarity=0.159 Sum_probs=134.6
Q ss_pred eEEEEECCCcEEEEECCCCeeeeeecCCCCe-EEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEe
Q 005352 367 YLLSASIDKTVRLWRVGNDHCLRVFPHSNYV-TCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYR 445 (701)
Q Consensus 367 ~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V-~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~s 445 (701)
.+++-..++.|.+.|..+.+.+..+.....+ ..+.|+| +++++++++.||.|.++|+.+.+++...........++++
T Consensus 8 ~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~-Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s 86 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSP-DGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVS 86 (369)
T ss_dssp EEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT--SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE-
T ss_pred EEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecC-CCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEc
Confidence 4456667899999999999999999854444 4577899 9999999999999999999999999888888889999999
Q ss_pred eCCCeEEEEe-cCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCcccee-e
Q 005352 446 PDGQGGIVGS-MMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGK-Y 523 (701)
Q Consensus 446 p~g~~l~~gs-~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~-~ 523 (701)
+||++++++. ..+.+.++|..+.+............. ....++.++..+|....++++.-..+.|.+.|..+.... .
T Consensus 87 ~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~-~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~ 165 (369)
T PF02239_consen 87 PDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVD-GPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKV 165 (369)
T ss_dssp -TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TT-TS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEE
T ss_pred CCCCEEEEEecCCCceeEeccccccceeeccccccccc-ccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccce
Confidence 9999999876 589999999998776554332222211 145678888888844344444455689999997654222 2
Q ss_pred ecccCCCCeEEEEEecCCCEEEEE-eCCCcEEEEeCCCCCC
Q 005352 524 KGLRRSGNQLSACFTSDGKHIVSA-GEDSNVYMWNCIGHEE 563 (701)
Q Consensus 524 ~~~~~~~~v~~l~~s~dg~~l~sg-s~Dg~I~iWd~~~~~~ 563 (701)
.............|+|+++|++.+ .....|-++|..+++.
T Consensus 166 ~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~ 206 (369)
T PF02239_consen 166 TTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKL 206 (369)
T ss_dssp EEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEE
T ss_pred eeecccccccccccCcccceeeecccccceeEEEeeccceE
Confidence 223345667889999999987665 5567899999887654
|
... |
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.9e-09 Score=117.08 Aligned_cols=196 Identities=15% Similarity=0.148 Sum_probs=128.9
Q ss_pred EcCCccCeEEEEEecCC-eEEEEECC---CcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEE-EEEcCCcEEEE--
Q 005352 350 FHGHSGEILDLSWSKNN-YLLSASID---KTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFI-SGSIDGKVRIW-- 422 (701)
Q Consensus 350 ~~~h~~~I~~l~~s~~~-~l~s~s~d---g~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~-sgs~dg~v~iw-- 422 (701)
+..+...+.+.+|+|++ .|+..+.+ ..|.+||+.+++........+.+.+.+|+| +++.|+ +.+.+|...||
T Consensus 191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SP-DG~~la~~~~~~g~~~Iy~~ 269 (427)
T PRK02889 191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSP-DGRTLAVALSRDGNSQIYTV 269 (427)
T ss_pred eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECC-CCCEEEEEEccCCCceEEEE
Confidence 34566788899999999 77666543 359999999987765544556677899999 888776 56677776665
Q ss_pred eCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEec-CCcEEEEEC--CCCeeeeeeeEEeecccCCCCCCeeEEEEecCCC
Q 005352 423 AVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSM-MGDCRFYNV--SDNHLELDAEICVHSKKKAPCKRITGFQFLPQDS 499 (701)
Q Consensus 423 d~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~-dg~v~i~d~--~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~ 499 (701)
|+.++....+..+........|+|||+.|+..+. .|...+|.+ .++.... +... ........|+| ++
T Consensus 270 d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~---lt~~------g~~~~~~~~Sp-DG 339 (427)
T PRK02889 270 NADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR---VTFT------GSYNTSPRISP-DG 339 (427)
T ss_pred ECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE---EecC------CCCcCceEECC-CC
Confidence 5555555555555555677899999998886654 456666655 3332211 1111 12234578999 67
Q ss_pred CEEEEEECCC---cEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCC---cEEEEeC
Q 005352 500 SKVMVSCADS---QVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDS---NVYMWNC 558 (701)
Q Consensus 500 ~~l~~~s~dg---~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg---~I~iWd~ 558 (701)
++|+..+.++ .|.+||+......... .........|+|||++|+.++.++ .+++.++
T Consensus 340 ~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt--~~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~ 402 (427)
T PRK02889 340 KLLAYISRVGGAFKLYVQDLATGQVTALT--DTTRDESPSFAPNGRYILYATQQGGRSVLAAVSS 402 (427)
T ss_pred CEEEEEEccCCcEEEEEEECCCCCeEEcc--CCCCccCceECCCCCEEEEEEecCCCEEEEEEEC
Confidence 7777766544 6999998754332221 223346789999999998877544 2445455
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.5e-09 Score=108.82 Aligned_cols=319 Identities=14% Similarity=0.166 Sum_probs=202.4
Q ss_pred CcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCc
Q 005352 251 GSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSES 330 (701)
Q Consensus 251 ~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (701)
.++...+++++|+++|.+.. ..++|++...+..+.+.
T Consensus 35 ~~~~v~~~S~~G~lfA~~~~-~~v~i~~~~~~~~~lt~------------------------------------------ 71 (566)
T KOG2315|consen 35 RPCNVFAYSNNGRLFAYSDN-QVVKVFEIATLKVVLCV------------------------------------------ 71 (566)
T ss_pred CcceeEEEcCCCcEEEEEcC-CeEEEEEccCCcEEEEe------------------------------------------
Confidence 34778889999988887764 68999998776311111
Q ss_pred cEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEE-----EC-----CCcEEEEECCCCeeeeeec--CCCCe
Q 005352 331 ACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSA-----SI-----DKTVRLWRVGNDHCLRVFP--HSNYV 397 (701)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~-----s~-----dg~I~iWd~~~~~~~~~~~--h~~~V 397 (701)
. ...+.++.|+|-+ +|.|= .. .-.+++|++.++.....+. ....
T Consensus 72 --------------------~--~~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~- 128 (566)
T KOG2315|consen 72 --------------------E--LKKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNG- 128 (566)
T ss_pred --------------------c--cceeeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcC-
Confidence 1 1156777788877 55431 12 2347899999965555554 2222
Q ss_pred EEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCC--eEEE-----EecCCcEEEEECCCCee
Q 005352 398 TCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQ--GGIV-----GSMMGDCRFYNVSDNHL 470 (701)
Q Consensus 398 ~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~--~l~~-----gs~dg~v~i~d~~~~~~ 470 (701)
.+..|++ ++.+.+ --..+.+.+|++.+.+.....-+...|+.+.++|.+. .+++ .+.-+.|+||.......
T Consensus 129 W~~qfs~-dEsl~a-rlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~ 206 (566)
T KOG2315|consen 129 WVPQFSI-DESLAA-RLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQ 206 (566)
T ss_pred ccccccc-chhhhh-hhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccc
Confidence 6899998 665433 3346789999998876665555678899999998743 3333 34556799998873221
Q ss_pred eeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEEC-----------CCcEEEEeCCccceeeecccCCCCeEEEEEec
Q 005352 471 ELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCA-----------DSQVRILQGPNVIGKYKGLRRSGNQLSACFTS 539 (701)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~-----------dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~ 539 (701)
.. ....+......-..+.|++....+|+.++. ..+++++++........+ ...++|.++.|+|
T Consensus 207 ~~-----~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L-~k~GPVhdv~W~~ 280 (566)
T KOG2315|consen 207 HQ-----PVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL-LKEGPVHDVTWSP 280 (566)
T ss_pred cc-----hhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEec-CCCCCceEEEECC
Confidence 10 000011111222346777754455554443 246788887744444444 3579999999999
Q ss_pred CCCEEEE--EeCCCcEEEEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCC
Q 005352 540 DGKHIVS--AGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAP 617 (701)
Q Consensus 540 dg~~l~s--gs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp 617 (701)
+|+-++. |-.-..+.|+|++..- .+.+...+-+.+-|+|
T Consensus 281 s~~EF~VvyGfMPAkvtifnlr~~~---------------------------------------v~df~egpRN~~~fnp 321 (566)
T KOG2315|consen 281 SGREFAVVYGFMPAKVTIFNLRGKP---------------------------------------VFDFPEGPRNTAFFNP 321 (566)
T ss_pred CCCEEEEEEecccceEEEEcCCCCE---------------------------------------eEeCCCCCccceEECC
Confidence 9976654 4466789999876542 1112223334455677
Q ss_pred CccccCccccc---cCCCCcccCCCCccCCCCccccccccchhhhhhhhhcccccccccCCCccEEEEecC------CCe
Q 005352 618 ARFSLGQEYVF---ESFPKGCATWPEEKLPALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGW------DGR 688 (701)
Q Consensus 618 ~~~~~~~~~~~---~s~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivTgg~------DG~ 688 (701)
. ++.++. +...|.+-+||......+..+.+. .+.-..++++ |.+|+||.. |..
T Consensus 322 ~----g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~-------------~tt~~eW~Pd-Ge~flTATTaPRlrvdNg 383 (566)
T KOG2315|consen 322 H----GNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAA-------------NTTVFEWSPD-GEYFLTATTAPRLRVDNG 383 (566)
T ss_pred C----CCEEEEeecCCCCCceEEEeccchhhccccccC-------------CceEEEEcCC-CcEEEEEeccccEEecCC
Confidence 5 444433 346677889999988888776444 2222367888 999999976 678
Q ss_pred EeEEeecCCCcC
Q 005352 689 IRSFLNYGLPIP 700 (701)
Q Consensus 689 Irvw~~~g~p~~ 700 (701)
|+|||.+|-+++
T Consensus 384 ~KiwhytG~~l~ 395 (566)
T KOG2315|consen 384 IKIWHYTGSLLH 395 (566)
T ss_pred eEEEEecCceee
Confidence 999999997654
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.5e-10 Score=108.59 Aligned_cols=276 Identities=16% Similarity=0.246 Sum_probs=168.9
Q ss_pred eeecCccccccccccceEEEEEccCccchhhhcccCceeccCC------------CcEEEEEEccCCC--EEEEEeCCCc
Q 005352 208 RVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHD------------GSILTMKFSPDGQ--YLASAGDDGV 273 (701)
Q Consensus 208 ~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~------------~~I~~l~fspdg~--~Lasgs~Dg~ 273 (701)
.+...+++|++|..+|+|.++.-.+..+. ......+++.|. ..|..+.|.+++. .++..+.|.+
T Consensus 32 ef~~~Ge~LatGdkgGRVv~f~r~~~~~~--ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdkt 109 (433)
T KOG1354|consen 32 EFDHYGERLATGDKGGRVVLFEREKLYKG--EYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKT 109 (433)
T ss_pred EeecccceEeecCCCCeEEEeeccccccc--ceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcc
Confidence 35567889999999999999986544331 111112345554 3688999988754 5677778999
Q ss_pred EEEEEeecCeeee-eecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecC-CccEEEcCCccccccCCCeEEE-
Q 005352 274 VRLWQVVEDERLT-EVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTS-ESACVVFPPKVFRILEKPLHEF- 350 (701)
Q Consensus 274 I~iWd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~- 350 (701)
|++|.+....... .+..+... .......+....... +..+.. .|.+.+
T Consensus 110 iKlWKi~er~~k~~~~~~~~~~-------------------~~~~~~~lr~p~~~~~~~~vea----------~prRv~a 160 (433)
T KOG1354|consen 110 IKLWKIRERGSKKEGYNLPEEG-------------------PPGTITSLRLPVEGRHDLEVEA----------SPRRVYA 160 (433)
T ss_pred eeeeeeeccccccccccccccC-------------------CCCccceeeceeeccccceeee----------eeeeecc
Confidence 9999997643221 11111110 000000000000000 001111 222222
Q ss_pred cCCccCeEEEEEecCCeEEEEECCCcEEEEECCCC-eeeeee--c------CCCCeEEEEEeeCCCCEEEEEEcCCcEEE
Q 005352 351 HGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGND-HCLRVF--P------HSNYVTCVHFNPVDDNYFISGSIDGKVRI 421 (701)
Q Consensus 351 ~~h~~~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~-~~~~~~--~------h~~~V~~l~f~p~~~~~l~sgs~dg~v~i 421 (701)
.+|+-.|.+|.++.++..+.+..|=.|.+|+++-- ++.... + ...-|++..|+|...+.|+-.+..|+|++
T Consensus 161 NaHtyhiNSIS~NsD~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrL 240 (433)
T KOG1354|consen 161 NAHTYHINSISVNSDKETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRL 240 (433)
T ss_pred ccceeEeeeeeecCccceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEE
Confidence 46888999999999984445566788999998632 222222 1 23458899999988889999999999999
Q ss_pred EeCCCCcEEE----Ee-------------cCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCC
Q 005352 422 WAVLSCHVVD----WV-------------DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKA 484 (701)
Q Consensus 422 wd~~~~~~~~----~~-------------~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~ 484 (701)
.|++...+.. ++ ..-..|..+.|+++|+++++-.. -+|++||+......... ..++.....
T Consensus 241 cDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t-~~vh~~lr~ 318 (433)
T KOG1354|consen 241 CDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVET-YPVHEYLRS 318 (433)
T ss_pred eechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceE-EeehHhHHH
Confidence 9998543321 11 11235888999999999998765 68999999654432221 111111000
Q ss_pred ---------CCCCeeEEEEecCCCCEEEEEECCCcEEEEeCC
Q 005352 485 ---------PCKRITGFQFLPQDSSKVMVSCADSQVRILQGP 517 (701)
Q Consensus 485 ---------~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~ 517 (701)
....-..++|+- ++.++++|+..+..+++++.
T Consensus 319 kLc~lYEnD~IfdKFec~~sg-~~~~v~TGsy~n~frvf~~~ 359 (433)
T KOG1354|consen 319 KLCSLYENDAIFDKFECSWSG-NDSYVMTGSYNNVFRVFNLA 359 (433)
T ss_pred HHHHHhhccchhheeEEEEcC-CcceEecccccceEEEecCC
Confidence 011123456766 67899999999999999943
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.5e-09 Score=115.30 Aligned_cols=197 Identities=14% Similarity=0.164 Sum_probs=133.9
Q ss_pred EcCCccCeEEEEEecCC-eEEEEECC---CcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEE-EEcCC--cEEEE
Q 005352 350 FHGHSGEILDLSWSKNN-YLLSASID---KTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFIS-GSIDG--KVRIW 422 (701)
Q Consensus 350 ~~~h~~~I~~l~~s~~~-~l~s~s~d---g~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~s-gs~dg--~v~iw 422 (701)
+..+...+...+|+|++ +|+.++.. ..|++||+.+++......+...+.+++|+| +++.|+. .+.++ .|++|
T Consensus 185 l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~sp-Dg~~l~~~~~~~~~~~i~~~ 263 (417)
T TIGR02800 185 ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSP-DGSKLAVSLSKDGNPDIYVM 263 (417)
T ss_pred eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECC-CCCEEEEEECCCCCccEEEE
Confidence 34455678888999999 77666543 479999999887665555666777899999 8877664 44444 58999
Q ss_pred eCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEec-CC--cEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCC
Q 005352 423 AVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSM-MG--DCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDS 499 (701)
Q Consensus 423 d~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~-dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~ 499 (701)
|+.+++...+..+........|+|+|+.|+..+. .+ .|.++++.+++... +. .....+....|+| ++
T Consensus 264 d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~---l~------~~~~~~~~~~~sp-dg 333 (417)
T TIGR02800 264 DLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRR---LT------FRGGYNASPSWSP-DG 333 (417)
T ss_pred ECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEE---ee------cCCCCccCeEECC-CC
Confidence 9998877666655555667899999998877654 33 57777877654321 11 1123456778999 67
Q ss_pred CEEEEEECCC---cEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCC---cEEEEeCC
Q 005352 500 SKVMVSCADS---QVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDS---NVYMWNCI 559 (701)
Q Consensus 500 ~~l~~~s~dg---~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg---~I~iWd~~ 559 (701)
.+++.++.++ .|.+||+.+....... .........|+|+|++|+.++.++ .+++.+..
T Consensus 334 ~~i~~~~~~~~~~~i~~~d~~~~~~~~l~--~~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~ 397 (417)
T TIGR02800 334 DLIAFVHREGGGFNIAVMDLDGGGERVLT--DTGLDESPSFAPNGRMILYATTRGGRGVLGLVSTD 397 (417)
T ss_pred CEEEEEEccCCceEEEEEeCCCCCeEEcc--CCCCCCCceECCCCCEEEEEEeCCCcEEEEEEECC
Confidence 7787777765 7888888753322211 122345568999999998877654 35555543
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.8e-10 Score=119.89 Aligned_cols=252 Identities=16% Similarity=0.245 Sum_probs=177.2
Q ss_pred CCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecC
Q 005352 249 HDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTS 328 (701)
Q Consensus 249 H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (701)
......|++|+....|+|.||.||.++|-.+.+...-..... +. -..
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~g-----------------la----------a~s------ 59 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSG-----------------LA----------AAS------ 59 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccc-----------------cc----------ccc------
Confidence 345678999999999999999999999999877531100000 00 000
Q ss_pred CccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec---CCCCeEEEEEee
Q 005352 329 ESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP---HSNYVTCVHFNP 404 (701)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~---h~~~V~~l~f~p 404 (701)
. -..-+++.||...|.-+.|+.+. .|-|+..+|.|.+|-+-.+....... ..+-|.+++|+.
T Consensus 60 ----------n----LsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~ 125 (1189)
T KOG2041|consen 60 ----------N----LSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNL 125 (1189)
T ss_pred ----------c----cchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcC
Confidence 0 02235788999999999999888 88888899999999988776544332 567799999998
Q ss_pred CCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCee---eeeeeEEeecc
Q 005352 405 VDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHL---ELDAEICVHSK 481 (701)
Q Consensus 405 ~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~---~~~~~~~~~~~ 481 (701)
++..+.....||.|.+=.+...++....-.......+.|++|.+.++.+-.+|.+++||...+-. ...-.......
T Consensus 126 -dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~ 204 (1189)
T KOG2041|consen 126 -DGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGI 204 (1189)
T ss_pred -CCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeee
Confidence 99999999999999887776655442222223355789999999999999999999999875421 11111222222
Q ss_pred cCCCCCCeeEEEEe-------cCCCCEEEEEECCCcEEEEeCCc-cceeeecccCCCCeEEEEEecCCCEEEEEeCC
Q 005352 482 KKAPCKRITGFQFL-------PQDSSKVMVSCADSQVRILQGPN-VIGKYKGLRRSGNQLSACFTSDGKHIVSAGED 550 (701)
Q Consensus 482 ~~~~~~~i~~l~~~-------p~~~~~l~~~s~dg~I~iwd~~~-~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~D 550 (701)
......+|..+.|. |.+...++++-.+|.+.|..-.+ ....... ..-.+..+.|+++|..|+.++.|
T Consensus 205 ~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~d--tgm~~vgakWnh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 205 FSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVD--TGMKIVGAKWNHNGAVLAVCGND 279 (1189)
T ss_pred ecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEe--cccEeecceecCCCcEEEEccCc
Confidence 23333456666664 23677899999999999876443 2222222 23678899999999999998865
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.5e-09 Score=114.54 Aligned_cols=218 Identities=16% Similarity=0.145 Sum_probs=132.8
Q ss_pred eccCCCcEEEEEEccCCCEEEEEeCC-C--cEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeE
Q 005352 246 IQAHDGSILTMKFSPDGQYLASAGDD-G--VVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (701)
Q Consensus 246 l~~H~~~I~~l~fspdg~~Lasgs~D-g--~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (701)
+..+...+.+..|+|||++|+..+.+ + .|.+||+.+++...
T Consensus 213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~------------------------------------ 256 (448)
T PRK04792 213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK------------------------------------ 256 (448)
T ss_pred eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE------------------------------------
Confidence 44467789999999999998876543 3 47777876654210
Q ss_pred EeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEE-EEECCCc--EEEEECCCCeeeeeecCCCCeE
Q 005352 323 SLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLL-SASIDKT--VRLWRVGNDHCLRVFPHSNYVT 398 (701)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~-s~s~dg~--I~iWd~~~~~~~~~~~h~~~V~ 398 (701)
+..+. +.....+|+|++ .|+ +.+.++. |.+||+.+++......+.....
T Consensus 257 ------------------------lt~~~---g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~ 309 (448)
T PRK04792 257 ------------------------VTSFP---GINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRHRAIDT 309 (448)
T ss_pred ------------------------ecCCC---CCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccCCCCcc
Confidence 11111 122357899999 454 5666775 7778988887655555556677
Q ss_pred EEEEeeCCCCEEEEEEc-CC--cEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecC-C--cEEEEECCCCeeee
Q 005352 399 CVHFNPVDDNYFISGSI-DG--KVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMM-G--DCRFYNVSDNHLEL 472 (701)
Q Consensus 399 ~l~f~p~~~~~l~sgs~-dg--~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~d-g--~v~i~d~~~~~~~~ 472 (701)
..+|+| +++.|+..+. ++ .|.++|+.+++..............+|+|+|++|+..+.+ + .|.++|+.++....
T Consensus 310 ~p~wSp-DG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~ 388 (448)
T PRK04792 310 EPSWHP-DGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV 388 (448)
T ss_pred ceEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE
Confidence 889999 8888776553 33 4677788877765543333334557899999998876553 3 35567777665422
Q ss_pred eeeEEeecccCCCCCCeeEEEEecCCCCEEEEEE-CCCc--EEEEeCCccceeeecccCCCCeEEEEEec
Q 005352 473 DAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSC-ADSQ--VRILQGPNVIGKYKGLRRSGNQLSACFTS 539 (701)
Q Consensus 473 ~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s-~dg~--I~iwd~~~~~~~~~~~~~~~~v~~l~~s~ 539 (701)
. .. . .......|+| ++..|+..+ .++. +++++.... .......+.+.+...+|+|
T Consensus 389 l-----t~-~----~~d~~ps~sp-dG~~I~~~~~~~g~~~l~~~~~~G~-~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 389 L-----TS-T----RLDESPSVAP-NGTMVIYSTTYQGKQVLAAVSIDGR-FKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred c-----cC-C----CCCCCceECC-CCCEEEEEEecCCceEEEEEECCCC-ceEECcCCCCCcCCCccCC
Confidence 1 11 0 0112347999 455555444 4443 666666422 2222222345566677776
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.5e-09 Score=109.48 Aligned_cols=280 Identities=9% Similarity=0.025 Sum_probs=175.3
Q ss_pred CCccCeEEEEEecCC--eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcE
Q 005352 352 GHSGEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHV 429 (701)
Q Consensus 352 ~h~~~I~~l~~s~~~--~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~ 429 (701)
.|...-+.|..+|+| .+++|..--.|++||+.+-.....-.....+..+.....|-..++.-..|.+|-+...-..
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~-- 126 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGR-- 126 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCe--
Confidence 467778899999999 6677788889999999876554333323333333332224445555566777766533211
Q ss_pred EEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCC
Q 005352 430 VDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADS 509 (701)
Q Consensus 430 ~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg 509 (701)
......+..-..++++.-.--|++++....|+-+++..+...... ......++++..++ -..+|++|+.+|
T Consensus 127 hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~--------~~~~~~lN~v~in~-~hgLla~Gt~~g 197 (703)
T KOG2321|consen 127 HYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPF--------ETDSGELNVVSINE-EHGLLACGTEDG 197 (703)
T ss_pred eeeeecCcCCccccccCCCccEEEeecCcceEEEEcccccccccc--------ccccccceeeeecC-ccceEEecccCc
Confidence 111222334455666654444555555677888888888754321 22236688899998 678999999999
Q ss_pred cEEEEeCCcccee--ee---------cccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCCCCccccccccccccc
Q 005352 510 QVRILQGPNVIGK--YK---------GLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERF 578 (701)
Q Consensus 510 ~I~iwd~~~~~~~--~~---------~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~ 578 (701)
.|-+||.+..... +. +......|+++.|+.+|-.+++|+.+|.|+|||+.+.++... -.+.
T Consensus 198 ~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~--------kdh~ 269 (703)
T KOG2321|consen 198 VVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLV--------KDHG 269 (703)
T ss_pred eEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceee--------cccC
Confidence 9999997642211 11 111234599999999999999999999999999998774221 1111
Q ss_pred cCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCCcccCCCCccCCCCccccccccchhh
Q 005352 579 TTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLSSASALHKS 658 (701)
Q Consensus 579 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~~~~~~~~ 658 (701)
....+..+.| .+. ..+..+++ -..+.+++|+...+.....+...
T Consensus 270 ~e~pi~~l~~---------------------------~~~--~~q~~v~S-~Dk~~~kiWd~~~Gk~~asiEpt------ 313 (703)
T KOG2321|consen 270 YELPIKKLDW---------------------------QDT--DQQNKVVS-MDKRILKIWDECTGKPMASIEPT------ 313 (703)
T ss_pred Cccceeeecc---------------------------ccc--CCCceEEe-cchHHhhhcccccCCceeecccc------
Confidence 1222333333 222 01222332 24456789999888765544222
Q ss_pred hhhhhhcccccccccCCCccEEEEecCCCeEeEEe
Q 005352 659 QYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFL 693 (701)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~g~~ivTgg~DG~Irvw~ 693 (701)
..+..+++-++ +-++++|-.++.|-.|-
T Consensus 314 ------~~lND~C~~p~-sGm~f~Ane~~~m~~yy 341 (703)
T KOG2321|consen 314 ------SDLNDFCFVPG-SGMFFTANESSKMHTYY 341 (703)
T ss_pred ------CCcCceeeecC-CceEEEecCCCcceeEE
Confidence 24555666677 77788999988887764
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.8e-09 Score=103.79 Aligned_cols=234 Identities=12% Similarity=0.207 Sum_probs=164.3
Q ss_pred ecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeec
Q 005352 210 RLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVD 289 (701)
Q Consensus 210 ~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~ 289 (701)
-+.++.++..+.|.++|||--.....--... ...-..+++++.+.+....|+.|-..|++.-+.+...-...
T Consensus 33 ~~~e~gv~~~s~drtvrv~lkrds~q~wpsI-----~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm--- 104 (404)
T KOG1409|consen 33 IPKEEGVISVSEDRTVRVWLKRDSGQYWPSI-----YHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKM--- 104 (404)
T ss_pred ccCCCCeEEccccceeeeEEeccccccCchh-----hhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhc---
Confidence 3455678889999999999643322211111 22245789999999999999999988988877765421000
Q ss_pred CCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eE
Q 005352 290 IPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YL 368 (701)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l 368 (701)
...+.+..|...|..+-|+... .+
T Consensus 105 -------------------------------------------------------~~~r~~~~h~~~v~~~if~~~~e~V 129 (404)
T KOG1409|consen 105 -------------------------------------------------------TFLKDYLAHQARVSAIVFSLTHEWV 129 (404)
T ss_pred -------------------------------------------------------chhhhhhhhhcceeeEEecCCceeE
Confidence 2334456799999999998777 99
Q ss_pred EEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCC---CCcEEEEecCCCcEEEEEEe
Q 005352 369 LSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVL---SCHVVDWVDIRQIVTAVCYR 445 (701)
Q Consensus 369 ~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~---~~~~~~~~~~~~~i~~i~~s 445 (701)
++.+.|+.+.---.+.+..+..+......+++.+.- . +...|...|.|.+-.+. -+.+....+|.+.+++++|.
T Consensus 130 ~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~-~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd 206 (404)
T KOG1409|consen 130 LSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDA-L--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWD 206 (404)
T ss_pred EEeccccceEEEeeccCCcccceEeeccCCCCceee-E--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEc
Confidence 999999888765666666666555444445555543 2 55556556665554443 23344677899999999999
Q ss_pred eCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCC
Q 005352 446 PDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP 517 (701)
Q Consensus 446 p~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~ 517 (701)
|....+++|..|..+.+||+-..+...- ....+...+..++..+ .-..+++++.||.|.+|+++
T Consensus 207 ~~~~~LfSg~~d~~vi~wdigg~~g~~~-------el~gh~~kV~~l~~~~-~t~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 207 PGQRLLFSGASDHSVIMWDIGGRKGTAY-------ELQGHNDKVQALSYAQ-HTRQLISCGEDGGIVVWNMN 270 (404)
T ss_pred CCCcEEEeccccCceEEEeccCCcceee-------eeccchhhhhhhhhhh-hheeeeeccCCCeEEEEecc
Confidence 9999999999999999999986654321 1233456677777766 56788999999999999843
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.3e-09 Score=115.63 Aligned_cols=193 Identities=20% Similarity=0.309 Sum_probs=147.0
Q ss_pred eeecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeee
Q 005352 208 RVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTE 287 (701)
Q Consensus 208 ~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~ 287 (701)
.+...+..+++.+.++.+.+|+.+....-. +.... -+.---...-+-++++.-++++|+.-+.|.+|+....+
T Consensus 94 ~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~-~i~~~--er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn---- 166 (967)
T KOG0974|consen 94 KLFEENKKIALVTSRNSLLIRDSKNSSVLS-KIQSD--ERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN---- 166 (967)
T ss_pred chhhhcceEEEEEcCceEEEEecccCceeh-hcCCC--ceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC----
Confidence 344455667788999999999876443211 11110 00001122234456777799999999999999986321
Q ss_pred ecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-
Q 005352 288 VDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN- 366 (701)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~- 366 (701)
++. .+.||.+.|.++.|+.+|
T Consensus 167 ---------------------------------------------------------~p~-~l~GHeG~iF~i~~s~dg~ 188 (967)
T KOG0974|consen 167 ---------------------------------------------------------KPI-RLKGHEGSIFSIVTSLDGR 188 (967)
T ss_pred ---------------------------------------------------------Ccc-eecccCCceEEEEEccCCc
Confidence 222 568999999999999999
Q ss_pred eEEEEECCCcEEEEECCCCeeee--eecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecC-CCcEEEEE
Q 005352 367 YLLSASIDKTVRLWRVGNDHCLR--VFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDI-RQIVTAVC 443 (701)
Q Consensus 367 ~l~s~s~dg~I~iWd~~~~~~~~--~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~i~~i~ 443 (701)
++++.|+|.++++|++.+.+... .|.|+..|..+.|.| + .+++++.|.+.++|+....+......| ...|..++
T Consensus 189 ~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~-n--~i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~ 265 (967)
T KOG0974|consen 189 YIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLP-N--RIITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIA 265 (967)
T ss_pred EEEEEecCcceeeeecccccccCcccccccceeEEEEecc-c--eeEEeccceEEEEEecccceehhhhhhhhcceeEEE
Confidence 99999999999999999988765 567999999999998 4 999999999999997765554444444 35699999
Q ss_pred EeeCCCeEEEEecCCcEEEEECCCC
Q 005352 444 YRPDGQGGIVGSMMGDCRFYNVSDN 468 (701)
Q Consensus 444 ~sp~g~~l~~gs~dg~v~i~d~~~~ 468 (701)
+.++...+++++.|+.+++|++...
T Consensus 266 ~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 266 VPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred EcCCceEEEeeccCcchhhhhhhcc
Confidence 9999999999999999999998754
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=7.1e-09 Score=113.15 Aligned_cols=219 Identities=12% Similarity=0.108 Sum_probs=137.0
Q ss_pred eeccCCCcEEEEEEccCCCEEEEEeCC---CcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceee
Q 005352 245 EIQAHDGSILTMKFSPDGQYLASAGDD---GVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISIL 321 (701)
Q Consensus 245 ~l~~H~~~I~~l~fspdg~~Lasgs~D---g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (701)
.+..|...+....|+|||+.|+..+.+ ..|.+|++.+++...
T Consensus 193 ~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~----------------------------------- 237 (430)
T PRK00178 193 TLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ----------------------------------- 237 (430)
T ss_pred EEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-----------------------------------
Confidence 344577889999999999999877643 358888887654211
Q ss_pred EEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEE-EEECCC--cEEEEECCCCeeeeeecCCCCe
Q 005352 322 KSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLL-SASIDK--TVRLWRVGNDHCLRVFPHSNYV 397 (701)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~-s~s~dg--~I~iWd~~~~~~~~~~~h~~~V 397 (701)
+....+.+....|+|+| .|+ +.+.++ .|.+||+.+++......+....
T Consensus 238 ----------------------------l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~ 289 (430)
T PRK00178 238 ----------------------------ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTNHPAID 289 (430)
T ss_pred ----------------------------ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEcccCCCCc
Confidence 11112234467899999 554 555555 5888899988766555555566
Q ss_pred EEEEEeeCCCCEEEEEEc-CC--cEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecC-C--cEEEEECCCCeee
Q 005352 398 TCVHFNPVDDNYFISGSI-DG--KVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMM-G--DCRFYNVSDNHLE 471 (701)
Q Consensus 398 ~~l~f~p~~~~~l~sgs~-dg--~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~d-g--~v~i~d~~~~~~~ 471 (701)
....|+| +++.|+..+. +| .|+++|+.+++...+...........|+|+|+.++..+.. + .|.+||+.++...
T Consensus 290 ~~~~~sp-Dg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~ 368 (430)
T PRK00178 290 TEPFWGK-DGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR 368 (430)
T ss_pred CCeEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE
Confidence 7789999 8887776553 33 5777888887765444333334567899999999887653 3 4788898876543
Q ss_pred eeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEEC-CC--cEEEEeCCccceeeecccCCCCeEEEEEec
Q 005352 472 LDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCA-DS--QVRILQGPNVIGKYKGLRRSGNQLSACFTS 539 (701)
Q Consensus 472 ~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~-dg--~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~ 539 (701)
.. .. . .......|+| ++..++..+. ++ .|.+++...... .....+.+.+...+|+|
T Consensus 369 ~l-----t~-~----~~~~~p~~sp-dg~~i~~~~~~~g~~~l~~~~~~g~~~-~~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 369 IL-----TD-T----SLDESPSVAP-NGTMLIYATRQQGRGVLMLVSINGRVR-LPLPTAQGEVREPSWSP 427 (430)
T ss_pred Ec-----cC-C----CCCCCceECC-CCCEEEEEEecCCceEEEEEECCCCce-EECcCCCCCcCCCccCC
Confidence 21 11 1 1112457999 5666665554 33 466666643222 11112344556666665
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.2e-07 Score=94.04 Aligned_cols=276 Identities=15% Similarity=0.224 Sum_probs=185.5
Q ss_pred cceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCC---CcEEEEEeecC-eeeeeecCCCCCCce
Q 005352 222 VQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDD---GVVRLWQVVED-ERLTEVDIPEIDPSC 297 (701)
Q Consensus 222 d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D---g~I~iWd~~~~-~~~~~~~~~~~~~~~ 297 (701)
++.|.+|++.....++..+. +-++.+.++-|+|+|++++|.++-.+ |.|--|.++.. ..+..+.
T Consensus 15 s~gI~v~~ld~~~g~l~~~~----~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln-------- 82 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQ----LVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLN-------- 82 (346)
T ss_pred CCceEEEEEeCcccccchhh----hccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEee--------
Confidence 67799999986665555432 34577889999999999999988664 66777776542 1111000
Q ss_pred eEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEEC-CC
Q 005352 298 IYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASI-DK 375 (701)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~-dg 375 (701)
...+.++ +-..+++++++ +|+++.. -|
T Consensus 83 -------------------------------------------------~~~~~g~--~p~yvsvd~~g~~vf~AnY~~g 111 (346)
T COG2706 83 -------------------------------------------------RQTLPGS--PPCYVSVDEDGRFVFVANYHSG 111 (346)
T ss_pred -------------------------------------------------ccccCCC--CCeEEEECCCCCEEEEEEccCc
Confidence 0111222 22778899999 7776664 58
Q ss_pred cEEEEECCC-Ce---eeeeecCCCC----------eEEEEEeeCCCCEEEEEEcC-CcEEEEeCCCCcEEE----EecCC
Q 005352 376 TVRLWRVGN-DH---CLRVFPHSNY----------VTCVHFNPVDDNYFISGSID-GKVRIWAVLSCHVVD----WVDIR 436 (701)
Q Consensus 376 ~I~iWd~~~-~~---~~~~~~h~~~----------V~~l~f~p~~~~~l~sgs~d-g~v~iwd~~~~~~~~----~~~~~ 436 (701)
.|.++-++. +. .+..+.|.+. +.+..|.| ++++|++.... -.|.+|++..+++.. .....
T Consensus 112 ~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G 190 (346)
T COG2706 112 SVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTP-DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPG 190 (346)
T ss_pred eEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCC-CCCEEEEeecCCceEEEEEcccCccccccccccCCC
Confidence 899998866 33 2344456655 88999999 99998887632 359999999876542 22445
Q ss_pred CcEEEEEEeeCCCeEEEEec-CCcEEEEECCCC--eeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEEC-CCcEE
Q 005352 437 QIVTAVCYRPDGQGGIVGSM-MGDCRFYNVSDN--HLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCA-DSQVR 512 (701)
Q Consensus 437 ~~i~~i~~sp~g~~l~~gs~-dg~v~i~d~~~~--~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~-dg~I~ 512 (701)
.....|.|+|++++..+.++ +++|.+|..... ++.....+...............|.++| ++++|.++.. ...|.
T Consensus 191 ~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~-dGrFLYasNRg~dsI~ 269 (346)
T COG2706 191 AGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISP-DGRFLYASNRGHDSIA 269 (346)
T ss_pred CCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECC-CCCEEEEecCCCCeEE
Confidence 66889999999999887665 899999999874 3322222222222233456677888999 7888777654 45788
Q ss_pred EEeCCccceeeec----ccCCCCeEEEEEecCCCEEEEEeCC-CcEEEEeCCCCC
Q 005352 513 ILQGPNVIGKYKG----LRRSGNQLSACFTSDGKHIVSAGED-SNVYMWNCIGHE 562 (701)
Q Consensus 513 iwd~~~~~~~~~~----~~~~~~v~~l~~s~dg~~l~sgs~D-g~I~iWd~~~~~ 562 (701)
+|.+......+.. ..+........|++.|++|++++.+ ..|.+|.++...
T Consensus 270 ~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~T 324 (346)
T COG2706 270 VFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKET 324 (346)
T ss_pred EEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCC
Confidence 8876643222221 1233446788999999999999866 458888776543
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.8e-09 Score=100.24 Aligned_cols=199 Identities=14% Similarity=0.159 Sum_probs=141.0
Q ss_pred CeEEEEEecCC-eEEEEECCCcEEEEECCCCeeee--eec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCc-EE
Q 005352 356 EILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLR--VFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH-VV 430 (701)
Q Consensus 356 ~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~--~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~-~~ 430 (701)
...++.|++.+ .++++-.+|.+.+-+........ ..+ |.-.+....|+-.+.+++.+|+.|+.+..||++... .+
T Consensus 123 ~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i 202 (339)
T KOG0280|consen 123 EALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFI 202 (339)
T ss_pred eeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCccee
Confidence 35678899888 88888889999866655554433 444 888999999998788999999999999999999433 22
Q ss_pred --EEecCCCcEEEEEEee-CCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEEC
Q 005352 431 --DWVDIRQIVTAVCYRP-DGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCA 507 (701)
Q Consensus 431 --~~~~~~~~i~~i~~sp-~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~ 507 (701)
....|...|.+|.-+| .+.++++|+.|-.|++||.++....+ ......+.|..+..+|.....+++++.
T Consensus 203 ~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl--------~~~~v~GGVWRi~~~p~~~~~lL~~CM 274 (339)
T KOG0280|consen 203 WHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPL--------FKAKVGGGVWRIKHHPEIFHRLLAACM 274 (339)
T ss_pred eecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCcc--------ccCccccceEEEEecchhhhHHHHHHH
Confidence 2345677788887776 67899999999999999999543221 122233789999999976666666666
Q ss_pred CCcEEEEeCCccceee----e-cccCCCCeEEEEEecCCCEEEEEe-CCCcEE-EEeCCCCC
Q 005352 508 DSQVRILQGPNVIGKY----K-GLRRSGNQLSACFTSDGKHIVSAG-EDSNVY-MWNCIGHE 562 (701)
Q Consensus 508 dg~I~iwd~~~~~~~~----~-~~~~~~~v~~l~~s~dg~~l~sgs-~Dg~I~-iWd~~~~~ 562 (701)
-+-.+|.+..+....+ . ...|.+-+....|.....+|+|++ .|..++ +|-.-++.
T Consensus 275 h~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~~ 336 (339)
T KOG0280|consen 275 HNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITGE 336 (339)
T ss_pred hcCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccCC
Confidence 6667777665333221 1 122666666667755556788875 566655 78655544
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.6e-08 Score=110.42 Aligned_cols=202 Identities=13% Similarity=0.115 Sum_probs=133.4
Q ss_pred eEEEcCCccCeEEEEEecCC-eEEEEECC---CcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEE-EEEcCC--cE
Q 005352 347 LHEFHGHSGEILDLSWSKNN-YLLSASID---KTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFI-SGSIDG--KV 419 (701)
Q Consensus 347 ~~~~~~h~~~I~~l~~s~~~-~l~s~s~d---g~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~-sgs~dg--~v 419 (701)
.+.+..+...+....|+|+| .|+..+.+ ..|.+||+.+++........+.+....|+| +++.|+ +...+| .|
T Consensus 191 ~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~Sp-DG~~la~~~~~~g~~~I 269 (430)
T PRK00178 191 AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSP-DGSKLAFVLSKDGNPEI 269 (430)
T ss_pred ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECC-CCCEEEEEEccCCCceE
Confidence 34555677789999999999 77665543 368999999887655544455566789999 888776 444455 58
Q ss_pred EEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEec-CC--cEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEec
Q 005352 420 RIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSM-MG--DCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLP 496 (701)
Q Consensus 420 ~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~-dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p 496 (701)
++||+.+++...+..+........|+|+|+.|+..+. +| .|+++++.+++... +... ........|+|
T Consensus 270 y~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~---lt~~------~~~~~~~~~Sp 340 (430)
T PRK00178 270 YVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER---VTFV------GNYNARPRLSA 340 (430)
T ss_pred EEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE---eecC------CCCccceEECC
Confidence 8889998887766666666777899999998877654 33 47777776665321 1110 11233567899
Q ss_pred CCCCEEEEEEC-CC--cEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCC---CcEEEEeCCCC
Q 005352 497 QDSSKVMVSCA-DS--QVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGED---SNVYMWNCIGH 561 (701)
Q Consensus 497 ~~~~~l~~~s~-dg--~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~D---g~I~iWd~~~~ 561 (701)
+++.++..+. ++ .|.++|+.+....... .........|+|||++|+..+.+ ..|++++++..
T Consensus 341 -dg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt--~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~ 408 (430)
T PRK00178 341 -DGKTLVMVHRQDGNFHVAAQDLQRGSVRILT--DTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR 408 (430)
T ss_pred -CCCEEEEEEccCCceEEEEEECCCCCEEEcc--CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 5666666554 33 5788888754332221 11222356899999999876644 34677776543
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.5e-10 Score=114.36 Aligned_cols=272 Identities=17% Similarity=0.231 Sum_probs=181.7
Q ss_pred CccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCC
Q 005352 212 NEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIP 291 (701)
Q Consensus 212 ~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~ 291 (701)
+++.++.+++|.+|++|.++....+.....+.-++++|+.+|..+.|-.+.++++++ ||.|++||.--+..+....-
T Consensus 746 NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~d- 822 (1034)
T KOG4190|consen 746 NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMED- 822 (1034)
T ss_pred cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcceeecccccchhHhhhc-
Confidence 456678899999999999987666665555566889999999999999999998887 78999999766543321110
Q ss_pred CCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCCe-EEE
Q 005352 292 EIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNY-LLS 370 (701)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~-l~s 370 (701)
.+ -.+..+.|.|+.--.... ++-
T Consensus 823 -----------------------------------------------------ap---k~~a~~~ikcl~nv~~~iliAg 846 (1034)
T KOG4190|consen 823 -----------------------------------------------------AP---KEGAGGNIKCLENVDRHILIAG 846 (1034)
T ss_pred -----------------------------------------------------Cc---ccCCCceeEecccCcchheeee
Confidence 00 011223344442111123 344
Q ss_pred EECCCcEEEEECCCCeeeeeec------CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEE-EecCCCcEEEEE
Q 005352 371 ASIDKTVRLWRVGNDHCLRVFP------HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD-WVDIRQIVTAVC 443 (701)
Q Consensus 371 ~s~dg~I~iWd~~~~~~~~~~~------h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~-~~~~~~~i~~i~ 443 (701)
++...+|+++|.+..+.+..++ .+..+.+++..+ .++.++++-.+|.|.+.|.++++++. |.........++
T Consensus 847 csaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~-~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla 925 (1034)
T KOG4190|consen 847 CSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVAD-KGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA 925 (1034)
T ss_pred ccchhhheeeecccccceeeEEeccCCCCchheeEEEecc-CcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc
Confidence 4788999999999987766664 346689999999 99999999999999999999999874 444444444443
Q ss_pred EeeCCCeEEEEecCCcEEE-EECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCC-----
Q 005352 444 YRPDGQGGIVGSMMGDCRF-YNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP----- 517 (701)
Q Consensus 444 ~sp~g~~l~~gs~dg~v~i-~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~----- 517 (701)
.|..+.++....|.++.+ |-..++...+..+ .+..+. .|...-+.-+++....+.+.+|--.
T Consensus 926 -apsdq~L~~saldHslaVnWhaldgimh~q~k--------pppepa---hflqsvgpSLV~a~~Gn~lgVYad~a~~ha 993 (1034)
T KOG4190|consen 926 -APSDQALAQSALDHSLAVNWHALDGIMHLQDK--------PPPEPA---HFLQSVGPSLVTAQNGNILGVYADSAELHA 993 (1034)
T ss_pred -CchhHHHHhhcccceeEeeehhcCCeeeeccC--------CCCcch---hhhhccCceeEEeccCcEEEEEecchhhhh
Confidence 355667777777888887 8766654332211 111111 1222234567777777788888532
Q ss_pred -ccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEE
Q 005352 518 -NVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYM 555 (701)
Q Consensus 518 -~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~i 555 (701)
....+.......+..++++--|-..-++.|++.|.|.+
T Consensus 994 ~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 994 ESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred hhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 11222333335567788888887777788888888765
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=6e-08 Score=99.44 Aligned_cols=311 Identities=13% Similarity=0.180 Sum_probs=189.6
Q ss_pred eeecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCC---------------
Q 005352 208 RVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDG--------------- 272 (701)
Q Consensus 208 ~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg--------------- 272 (701)
+.++.+.+++ ......|.+|...... .+..+ -...|..+.|+|.++||.|-+..+
T Consensus 39 ~~SP~G~~l~-~~~~~~V~~~~g~~~~-~l~~~--------~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n 108 (561)
T COG5354 39 SESPLGTYLF-SEHAAGVECWGGPSKA-KLVRF--------RHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKN 108 (561)
T ss_pred eecCcchhee-hhhccceEEccccchh-heeee--------ecCCceecccCcccceeeeeccCCccChhhccCCccccC
Confidence 3445555444 3445678899754332 11111 224589999999999999976544
Q ss_pred cEEEEEeecCeeeeeecCCCCC--Cc-eeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEE
Q 005352 273 VVRLWQVVEDERLTEVDIPEID--PS-CIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHE 349 (701)
Q Consensus 273 ~I~iWd~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (701)
.+.+||+.++..+..+.....+ .. .+.|..+...... + ....+.++.. .-.+...+.+.
T Consensus 109 ~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~AR-v----------------v~~sl~i~e~-t~n~~~~p~~~ 170 (561)
T COG5354 109 NVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVAR-V----------------VGSSLYIHEI-TDNIEEHPFKN 170 (561)
T ss_pred ceeEEeccCceeEeeccccCCcccccceeeeeecchhhhh-h----------------ccCeEEEEec-CCccccCchhh
Confidence 4999999999988887765543 11 2222222211100 0 0011111111 11111223333
Q ss_pred EcCCccCeEEEEEecCC---eEEE-----EECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEE------
Q 005352 350 FHGHSGEILDLSWSKNN---YLLS-----ASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGS------ 414 (701)
Q Consensus 350 ~~~h~~~I~~l~~s~~~---~l~s-----~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs------ 414 (701)
++ ...|+...|+|.+ .|+. .+.++++++|.+..+..+.+-. ..-.=..+.|++ .+++|+.--
T Consensus 171 lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~-~g~~ll~l~~t~~ks 247 (561)
T COG5354 171 LR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQV-LGKYLLVLVMTHTKS 247 (561)
T ss_pred cc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEec-CCceEEEEEEEeeec
Confidence 32 3568888999974 4342 4667899999998776665443 122223577777 666655321
Q ss_pred -----cCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEE--ecCCcEEEEECCCCeeeeeeeEEeecccCCCCC
Q 005352 415 -----IDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVG--SMMGDCRFYNVSDNHLELDAEICVHSKKKAPCK 487 (701)
Q Consensus 415 -----~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g--s~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~ 487 (701)
....++|+++....+.......++|...+|.|.++.+++. ...-.+.++|++.+ +... .+..
T Consensus 248 nKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~----------~Pe~ 316 (561)
T COG5354 248 NKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFY----------FPEQ 316 (561)
T ss_pred ccceeccceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccc-eEEe----------cCCc
Confidence 2356889998855444444778999999999988876664 46888999999876 2211 1112
Q ss_pred CeeEEEEecCCCCEEEEEEC---CCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEe------CCCcEEEEeC
Q 005352 488 RITGFQFLPQDSSKVMVSCA---DSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAG------EDSNVYMWNC 558 (701)
Q Consensus 488 ~i~~l~~~p~~~~~l~~~s~---dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs------~Dg~I~iWd~ 558 (701)
.=+-+.|+| ...++++++. .|.|-+||........... ......-+.|+||++++.+.. .|..|.||++
T Consensus 317 ~rNT~~fsp-~~r~il~agF~nl~gni~i~~~~~rf~~~~~~-~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v 394 (561)
T COG5354 317 KRNTIFFSP-HERYILFAGFDNLQGNIEIFDPAGRFKVAGAF-NGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDV 394 (561)
T ss_pred ccccccccC-cccEEEEecCCccccceEEeccCCceEEEEEe-ecCCceEeeccCCceEEEecCCCcccccCcceEEEEe
Confidence 234567888 6677777665 4789999987554444221 233445678999999998773 4788999999
Q ss_pred CCCC
Q 005352 559 IGHE 562 (701)
Q Consensus 559 ~~~~ 562 (701)
....
T Consensus 395 ~g~~ 398 (561)
T COG5354 395 YGAK 398 (561)
T ss_pred cCch
Confidence 8765
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.4e-07 Score=110.22 Aligned_cols=331 Identities=14% Similarity=0.152 Sum_probs=196.1
Q ss_pred CcceeeecC--ccccccccccceEEEEEccCccchhhhcccCceec-cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEee
Q 005352 204 GEGERVRLN--EEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQ-AHDGSILTMKFSPDGQYLASAGDDGVVRLWQVV 280 (701)
Q Consensus 204 ~~~~~~~~~--~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~-~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~ 280 (701)
+.+..+.+- .+.++++..+|.|.+..++...... . -++- .-...|.+++||||+..||.+..+++|.+-. .
T Consensus 76 ~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~-~----~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt-~ 149 (928)
T PF04762_consen 76 DKIVSFQYLADSESLCIALASGDIILVREDPDPDED-E----IEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMT-R 149 (928)
T ss_pred CcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCc-e----eEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEe-c
Confidence 344455443 3456668888988888433211000 0 1111 2356899999999999999999899888774 4
Q ss_pred cCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEE
Q 005352 281 EDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDL 360 (701)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l 360 (701)
+-..+.+..+....... .....+.|++.....-....+.. .. ..-++..- ......+. +.+.-..|
T Consensus 150 ~fd~i~E~~l~~~~~~~--------~~~VsVGWGkKeTQF~Gs~gK~a-a~-~~~~p~~~---~~d~~~~s-~dd~~~~I 215 (928)
T PF04762_consen 150 DFDPISEVPLDSDDFGE--------SKHVSVGWGKKETQFHGSAGKAA-AR-QLRDPTVP---KVDEGKLS-WDDGRVRI 215 (928)
T ss_pred cceEEEEeecCccccCC--------CceeeeccCcccCccCcchhhhh-hh-hccCCCCC---ccccCccc-cCCCceEE
Confidence 44555554443222110 11111222221111000000000 00 00000000 00112223 45566789
Q ss_pred EEecCC-eEEEEEC---C---CcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEc---CCcEEEEeCCCCcE
Q 005352 361 SWSKNN-YLLSASI---D---KTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSI---DGKVRIWAVLSCHV 429 (701)
Q Consensus 361 ~~s~~~-~l~s~s~---d---g~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~---dg~v~iwd~~~~~~ 429 (701)
+|-.|| +|++.+. . ..|+||+-+ |....+.. -.+--.+++|.| .|++||+.-. ...|.+|.-+.-+.
T Consensus 216 SWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrP-sG~lIA~~q~~~~~~~VvFfErNGLrh 293 (928)
T PF04762_consen 216 SWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRP-SGNLIASSQRLPDRHDVVFFERNGLRH 293 (928)
T ss_pred EECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCC-CCCEEEEEEEcCCCcEEEEEecCCcEe
Confidence 999999 8887764 2 579999965 55444433 334456789999 9999988764 34567776443222
Q ss_pred EE----EecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEE
Q 005352 430 VD----WVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVS 505 (701)
Q Consensus 430 ~~----~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~ 505 (701)
-. .......|..+.|++++..|++...+. |.+|-..+.+..++..+.... ...+..+.|+|.++..|.+.
T Consensus 294 geF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~-----~~~~~~~~Wdpe~p~~L~v~ 367 (928)
T PF04762_consen 294 GEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSS-----SESVNFVKWDPEKPLRLHVL 367 (928)
T ss_pred eeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccC-----CCCCCceEECCCCCCEEEEE
Confidence 21 113356799999999999999977655 999999998877666554332 12344499999888888888
Q ss_pred ECCCcEEEEeCC-----------------------ccce------------eeecccCCCCeEEEEEecCCCEEEEEeCC
Q 005352 506 CADSQVRILQGP-----------------------NVIG------------KYKGLRRSGNQLSACFTSDGKHIVSAGED 550 (701)
Q Consensus 506 s~dg~I~iwd~~-----------------------~~~~------------~~~~~~~~~~v~~l~~s~dg~~l~sgs~D 550 (701)
+.++.+..++.. +... .........+|.+++|++++..+++-..|
T Consensus 368 t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d 447 (928)
T PF04762_consen 368 TSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSD 447 (928)
T ss_pred ecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECC
Confidence 887777665421 0000 00011245789999999999889999999
Q ss_pred CcEEEEeCCCCC
Q 005352 551 SNVYMWNCIGHE 562 (701)
Q Consensus 551 g~I~iWd~~~~~ 562 (701)
|.|.+|......
T Consensus 448 ~~l~~~~~~~~~ 459 (928)
T PF04762_consen 448 GSLSIYEWDLKN 459 (928)
T ss_pred CCEEEEEecCCC
Confidence 999999865543
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.8e-07 Score=93.31 Aligned_cols=271 Identities=11% Similarity=0.064 Sum_probs=167.4
Q ss_pred ceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeC----------CCcEEEEEeecCeeeeeecCCC
Q 005352 223 QRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGD----------DGVVRLWQVVEDERLTEVDIPE 292 (701)
Q Consensus 223 ~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~----------Dg~I~iWd~~~~~~~~~~~~~~ 292 (701)
++|.|.|..... ... .+..-..+- .+ +||||+.|+.+.. +..|.+||..+.+.+.++.++.
T Consensus 27 ~~v~ViD~~~~~--v~g-----~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~ 97 (352)
T TIGR02658 27 TQVYTIDGEAGR--VLG-----MTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPE 97 (352)
T ss_pred ceEEEEECCCCE--EEE-----EEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCC
Confidence 788888865432 111 122122222 24 8999998877765 7899999999998887776543
Q ss_pred CCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEE
Q 005352 293 IDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSA 371 (701)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~ 371 (701)
.+.. . ....-..++++|+| +|+..
T Consensus 98 ~p~~------------------------------------------------------~-~~~~~~~~~ls~dgk~l~V~ 122 (352)
T TIGR02658 98 GPRF------------------------------------------------------L-VGTYPWMTSLTPDNKTLLFY 122 (352)
T ss_pred Cchh------------------------------------------------------h-ccCccceEEECCCCCEEEEe
Confidence 2110 0 01123456889999 66655
Q ss_pred E-C-CCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCC-CcEE----EEecC-CCcE-EEE
Q 005352 372 S-I-DKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS-CHVV----DWVDI-RQIV-TAV 442 (701)
Q Consensus 372 s-~-dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~-~~~~----~~~~~-~~~i-~~i 442 (701)
. . +..|.+.|+.+++.+..+.-.+...-...++ .. +.+-+.||......+.+ ++.. ..+.. ..++ ..-
T Consensus 123 n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e--~~-~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP 199 (352)
T TIGR02658 123 QFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTAN--DT-FFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHP 199 (352)
T ss_pred cCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecC--Cc-cEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCC
Confidence 5 3 7899999999999999888655444333332 22 22334566665544432 2211 11111 0010 001
Q ss_pred EEee-CCCeEEEEecCCcEEEEECCCCeeeeeeeEEeeccc----CCCCCCeeEEEEecCCCCEEEEEE----------C
Q 005352 443 CYRP-DGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKK----KAPCKRITGFQFLPQDSSKVMVSC----------A 507 (701)
Q Consensus 443 ~~sp-~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~----~~~~~~i~~l~~~p~~~~~l~~~s----------~ 507 (701)
.|.+ +|+++++... |.|.+.|+..........+...... .-....+.-++++| +++.+++.. .
T Consensus 200 ~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~-dg~~lyV~~~~~~~~thk~~ 277 (352)
T TIGR02658 200 AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHR-ARDRIYLLADQRAKWTHKTA 277 (352)
T ss_pred ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcC-CCCEEEEEecCCccccccCC
Confidence 4456 8888888877 9999999876554333333222211 12334455599999 455555532 1
Q ss_pred CCcEEEEeCCccceeeecccCCCCeEEEEEecCCC-EEEEEe-CCCcEEEEeCCCCCC
Q 005352 508 DSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGK-HIVSAG-EDSNVYMWNCIGHEE 563 (701)
Q Consensus 508 dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~-~l~sgs-~Dg~I~iWd~~~~~~ 563 (701)
.+.|.++|..+........ -...+..++++||++ +|++.. .++.|.+.|..+++.
T Consensus 278 ~~~V~ViD~~t~kvi~~i~-vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~ 334 (352)
T TIGR02658 278 SRFLFVVDAKTGKRLRKIE-LGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKE 334 (352)
T ss_pred CCEEEEEECCCCeEEEEEe-CCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeE
Confidence 2579999998766655543 346889999999999 888776 578899999988873
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.4e-08 Score=102.42 Aligned_cols=139 Identities=15% Similarity=0.200 Sum_probs=114.2
Q ss_pred eEEEEECCCcEEEEECCCCeeeeeec---CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEE-EecCCCcEEEE
Q 005352 367 YLLSASIDKTVRLWRVGNDHCLRVFP---HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD-WVDIRQIVTAV 442 (701)
Q Consensus 367 ~l~s~s~dg~I~iWd~~~~~~~~~~~---h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~-~~~~~~~i~~i 442 (701)
.++-|...|.|.+|++..++....+. |.+.|.++.++. +-..|.+++.|+.+..|+...++.+. +......+.++
T Consensus 72 ~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~-~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl 150 (541)
T KOG4547|consen 72 MLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQ-RLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSL 150 (541)
T ss_pred EEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeeccc-ccCceEecCCceeEEEEecccceeeeeeccCCCccceE
Confidence 78888899999999999999888876 999999999998 88899999999999999999988774 55567789999
Q ss_pred EEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecC----CCCEEEEE-ECCCcEEEEeC
Q 005352 443 CYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQ----DSSKVMVS-CADSQVRILQG 516 (701)
Q Consensus 443 ~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~----~~~~l~~~-s~dg~I~iwd~ 516 (701)
+++|||..+++++ +.|++||+++.+... ....|...|.++.|... .+.+++++ ..+..+.+|-.
T Consensus 151 ~is~D~~~l~~as--~~ik~~~~~~kevv~--------~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v 219 (541)
T KOG4547|consen 151 CISPDGKILLTAS--RQIKVLDIETKEVVI--------TFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVV 219 (541)
T ss_pred EEcCCCCEEEecc--ceEEEEEccCceEEE--------EecCCCcceEEEEEEEeccccccceeeeccccccceeEEEE
Confidence 9999999999987 689999999987643 25567788999998763 14455544 34566666654
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.1e-07 Score=97.51 Aligned_cols=235 Identities=14% Similarity=0.182 Sum_probs=151.3
Q ss_pred CCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecC
Q 005352 249 HDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTS 328 (701)
Q Consensus 249 H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (701)
-.-++..++|||.|.+|++....| |.+|.-.....+..+.
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~--------------------------------------- 70 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFR--------------------------------------- 70 (561)
T ss_pred cCcchhheeecCcchheehhhccc-eEEccccchhheeeee---------------------------------------
Confidence 456889999999999999998765 8899866543222221
Q ss_pred CccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECC---------------CcEEEEECCCCeeeeeec
Q 005352 329 ESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASID---------------KTVRLWRVGNDHCLRVFP 392 (701)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~d---------------g~I~iWd~~~~~~~~~~~ 392 (701)
...|..+.|+|++ ||.+=+.. ..+.+||+.++..+..|.
T Consensus 71 -------------------------~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~ 125 (561)
T COG5354 71 -------------------------HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFN 125 (561)
T ss_pred -------------------------cCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeecc
Confidence 1356677777777 66665433 359999999999999887
Q ss_pred CC-CC--eE-EEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEE--EEecC-CCcEEEEEEeeCCC--eEEE-----EecCC
Q 005352 393 HS-NY--VT-CVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV--DWVDI-RQIVTAVCYRPDGQ--GGIV-----GSMMG 458 (701)
Q Consensus 393 h~-~~--V~-~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~--~~~~~-~~~i~~i~~sp~g~--~l~~-----gs~dg 458 (701)
.. .+ .. -+.|+- ++++++-. ....++|+++ +.... ..... ...|....|+|.++ .|+. +...+
T Consensus 126 ~~~q~~~~Wp~~k~s~-~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa 202 (561)
T COG5354 126 GISQPYLGWPVLKFSI-DDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPA 202 (561)
T ss_pred ccCCcccccceeeeee-cchhhhhh-ccCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCc
Confidence 22 22 33 678887 77776655 3457999997 44322 22222 25688888999643 3343 45678
Q ss_pred cEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEE-----------CCCcEEEEeCCccceeeeccc
Q 005352 459 DCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSC-----------ADSQVRILQGPNVIGKYKGLR 527 (701)
Q Consensus 459 ~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s-----------~dg~I~iwd~~~~~~~~~~~~ 527 (701)
.+++|.+..+.......+.-. .-..+.|.+ .+.++++-. ....++|+++......... .
T Consensus 203 ~~~i~sIp~~s~l~tk~lfk~--------~~~qLkW~~-~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~ 272 (561)
T COG5354 203 MVRILSIPKNSVLVTKNLFKV--------SGVQLKWQV-LGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK-D 272 (561)
T ss_pred EEEEEEccCCCeeeeeeeEee--------cccEEEEec-CCceEEEEEEEeeecccceeccceEEEEeecccccceec-c
Confidence 899999986655433322111 123456666 344443311 2356788887743322221 3
Q ss_pred CCCCeEEEEEecCCCEEEEE--eCCCcEEEEeCCCC
Q 005352 528 RSGNQLSACFTSDGKHIVSA--GEDSNVYMWNCIGH 561 (701)
Q Consensus 528 ~~~~v~~l~~s~dg~~l~sg--s~Dg~I~iWd~~~~ 561 (701)
..++|...+|.|.++.+++. -.+..+.++++...
T Consensus 273 ~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N 308 (561)
T COG5354 273 LKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN 308 (561)
T ss_pred ccccceeeeecccCCceeEEecccccceeecccccc
Confidence 57899999999988776554 47788888887754
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=5.2e-08 Score=106.23 Aligned_cols=201 Identities=13% Similarity=0.154 Sum_probs=126.1
Q ss_pred EEEcCCccCeEEEEEecCC-eEEEEEC-CC--cEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEE-EEcCCc--EE
Q 005352 348 HEFHGHSGEILDLSWSKNN-YLLSASI-DK--TVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFIS-GSIDGK--VR 420 (701)
Q Consensus 348 ~~~~~h~~~I~~l~~s~~~-~l~s~s~-dg--~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~s-gs~dg~--v~ 420 (701)
+.+..+...+....|+|+| .|+..+. ++ .|.+||+.+++........+.....+|+| +++.|+. ...+|. |+
T Consensus 211 ~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSP-DG~~La~~~~~~g~~~Iy 289 (448)
T PRK04792 211 QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSP-DGKKLALVLSKDGQPEIY 289 (448)
T ss_pred eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECC-CCCEEEEEEeCCCCeEEE
Confidence 3444566788899999999 6665543 33 58889998887544433344455789999 8887764 555664 78
Q ss_pred EEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEec-CC--cEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecC
Q 005352 421 IWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSM-MG--DCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQ 497 (701)
Q Consensus 421 iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~-dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~ 497 (701)
++|+.+++......+.......+|+|||+.|+..+. ++ .|.++|+.+++... +.. .........|+|
T Consensus 290 ~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~---Lt~------~g~~~~~~~~Sp- 359 (448)
T PRK04792 290 VVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR---LTF------EGEQNLGGSITP- 359 (448)
T ss_pred EEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE---Eec------CCCCCcCeeECC-
Confidence 889988887766666666778899999998877654 33 46666776654321 111 111223468999
Q ss_pred CCCEEEEEEC-CC--cEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCC-Cc--EEEEeCCCC
Q 005352 498 DSSKVMVSCA-DS--QVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGED-SN--VYMWNCIGH 561 (701)
Q Consensus 498 ~~~~l~~~s~-dg--~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~D-g~--I~iWd~~~~ 561 (701)
+++.++..+. ++ .|.++|+.+....... .........|+|||++|+..+.+ +. +++++.+..
T Consensus 360 DG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt--~~~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~ 427 (448)
T PRK04792 360 DGRSMIMVNRTNGKFNIARQDLETGAMQVLT--STRLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGR 427 (448)
T ss_pred CCCEEEEEEecCCceEEEEEECCCCCeEEcc--CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 5566655544 44 3555676544322211 11122345799999988766543 33 677776433
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.3e-09 Score=123.61 Aligned_cols=191 Identities=13% Similarity=0.175 Sum_probs=153.2
Q ss_pred cCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec--CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCC
Q 005352 351 HGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSC 427 (701)
Q Consensus 351 ~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~ 427 (701)
+.|-..|.++.-+|.. +.+||+.||.|++|....++.+..+. .+..|+.+.|+. .|+.+..+..||.+.+|.+...
T Consensus 2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~-qGnk~~i~d~dg~l~l~q~~pk 2283 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNH-QGNKFGIVDGDGDLSLWQASPK 2283 (2439)
T ss_pred ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcc-cCCceeeeccCCceeecccCCc
Confidence 3455677888878887 99999999999999999998888876 447899999998 8999999999999999999977
Q ss_pred cEEEEecCCCcEEEEEEeeCCCeEEEEe---cCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEE
Q 005352 428 HVVDWVDIRQIVTAVCYRPDGQGGIVGS---MMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMV 504 (701)
Q Consensus 428 ~~~~~~~~~~~i~~i~~sp~g~~l~~gs---~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~ 504 (701)
....+..|....+.+.|-. ..+++++ .++.+.+||..-..... .+ ...|...++++++.| ..++|++
T Consensus 2284 ~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s----~v---~~~H~~gaT~l~~~P-~~qllis 2353 (2439)
T KOG1064|consen 2284 PYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNS----LV---HTCHDGGATVLAYAP-KHQLLIS 2353 (2439)
T ss_pred ceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccc----ee---eeecCCCceEEEEcC-cceEEEe
Confidence 7778888888888888875 5566653 47889999976443221 11 266788999999999 7899999
Q ss_pred EECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 505 SCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 505 ~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
|+.+|.|++||++......... . ++ ...++++|+..|.|+||++....
T Consensus 2354 ggr~G~v~l~D~rqrql~h~~~-----~----~~-~~~~f~~~ss~g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2354 GGRKGEVCLFDIRQRQLRHTFQ-----A----LD-TREYFVTGSSEGNIKIWRLSEFG 2401 (2439)
T ss_pred cCCcCcEEEeehHHHHHHHHhh-----h----hh-hhheeeccCcccceEEEEccccc
Confidence 9999999999998544332221 1 44 56799999999999999998765
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.9e-07 Score=97.65 Aligned_cols=266 Identities=13% Similarity=0.080 Sum_probs=158.3
Q ss_pred CCeEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcEE----
Q 005352 365 NNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVT---- 440 (701)
Q Consensus 365 ~~~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~---- 440 (701)
++.++.++.++.+..+|..+++.+........+.+.-.. .+..++.+..++.|..||..+++.+-......+..
T Consensus 105 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~ 182 (377)
T TIGR03300 105 GGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRG 182 (377)
T ss_pred CCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecC
Confidence 447888889999999999999998877655544332222 34567777889999999999998764443322211
Q ss_pred --EEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEec-CCCCEEEEEECCCcEEEEeCC
Q 005352 441 --AVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLP-QDSSKVMVSCADSQVRILQGP 517 (701)
Q Consensus 441 --~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p-~~~~~l~~~s~dg~I~iwd~~ 517 (701)
+... .+..++++..+|.+..+|+.+++............. ........+.-.| -.+..+++++.++.++.||..
T Consensus 183 ~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~-~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~ 259 (377)
T TIGR03300 183 SASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGR-TELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLR 259 (377)
T ss_pred CCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCC-CchhhhhccCCccEEECCEEEEEEcCCEEEEEECC
Confidence 1111 134778888899999999988876543322110000 0000000000001 024578888889999999998
Q ss_pred ccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCC
Q 005352 518 NVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAE 597 (701)
Q Consensus 518 ~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 597 (701)
+......... ...... ...+.+|+.++.||.|+.+|..+++.. |.-....
T Consensus 260 tG~~~W~~~~--~~~~~p--~~~~~~vyv~~~~G~l~~~d~~tG~~~-----------------------W~~~~~~--- 309 (377)
T TIGR03300 260 SGRVLWKRDA--SSYQGP--AVDDNRLYVTDADGVVVALDRRSGSEL-----------------------WKNDELK--- 309 (377)
T ss_pred CCcEEEeecc--CCccCc--eEeCCEEEEECCCCeEEEEECCCCcEE-----------------------Ecccccc---
Confidence 7655544321 111122 235678888889999999999888621 1100000
Q ss_pred CCCccccCCCCCCCccccCCCccccCccccccCCCCcccCCCCccCCCCccccccccchhhhhhhhhcccccccccCCCc
Q 005352 598 KEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLSSASALHKSQYKFLKSSCLCTTSSHAWG 677 (701)
Q Consensus 598 ~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 677 (701)
.. ...+|. ..+..++..+.++.+..++..+.+.+.++..+. ..+....... +
T Consensus 310 ---------~~----~~ssp~--i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~-----------~~~~~sp~~~--~ 361 (377)
T TIGR03300 310 ---------YR----QLTAPA--VVGGYLVVGDFEGYLHWLSREDGSFVARLKTDG-----------SGIASPPVVV--G 361 (377)
T ss_pred ---------CC----ccccCE--EECCEEEEEeCCCEEEEEECCCCCEEEEEEcCC-----------CccccCCEEE--C
Confidence 00 001221 124466667788888888888888776664441 1222222222 3
Q ss_pred cEEEEecCCCeEeEEe
Q 005352 678 LVIVTAGWDGRIRSFL 693 (701)
Q Consensus 678 ~~ivTgg~DG~Irvw~ 693 (701)
..|+.++.||.|..|+
T Consensus 362 ~~l~v~~~dG~l~~~~ 377 (377)
T TIGR03300 362 DGLLVQTRDGDLYAFR 377 (377)
T ss_pred CEEEEEeCCceEEEeC
Confidence 4578888999998875
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.7e-07 Score=88.63 Aligned_cols=190 Identities=14% Similarity=0.058 Sum_probs=130.7
Q ss_pred eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCc--EE--EEecCCCcEEE
Q 005352 367 YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH--VV--DWVDIRQIVTA 441 (701)
Q Consensus 367 ~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~--~~--~~~~~~~~i~~ 441 (701)
.+..++.|.++++.++.-+....... ..-.+.++++++ ++.++++.+....|..|.+.... .+ ........-.+
T Consensus 130 ~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~ 208 (344)
T KOG4532|consen 130 PLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSN-DPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFY 208 (344)
T ss_pred ceeeccCCcceeEEEEecCcccceeeccccceeeeEEcC-CCceEEEecCCCcceEEEeCCccceeeeeEecccCCCcee
Confidence 57778889999988876554333222 113488999999 99999999999999999887542 22 22334455678
Q ss_pred EEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCC-CEEEEEECCCcEEEEeCCccc
Q 005352 442 VCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDS-SKVMVSCADSQVRILQGPNVI 520 (701)
Q Consensus 442 i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~-~~l~~~s~dg~I~iwd~~~~~ 520 (701)
.+|+.....+|+++.||++.|||++....... .....+..|.+.+..+.|++.+. .+|+..-.-+.+.+.|+++..
T Consensus 209 ~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~---~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~ 285 (344)
T KOG4532|consen 209 NSFSENDLQFAVVFQDGTCAIYDVRNMATPMA---EISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYV 285 (344)
T ss_pred eeeccCcceEEEEecCCcEEEEEecccccchh---hhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCc
Confidence 88999999999999999999999987553322 12223455888999999998433 355555557889999998654
Q ss_pred eeeec-------ccCC-CCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 005352 521 GKYKG-------LRRS-GNQLSACFTSDGKHIVSAGEDSNVYMWNCIGH 561 (701)
Q Consensus 521 ~~~~~-------~~~~-~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~ 561 (701)
..... ..|. ..|....|+.++.-+.+.+++ .++-|++...
T Consensus 286 ~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~sr 333 (344)
T KOG4532|consen 286 NHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILSR 333 (344)
T ss_pred eeeEEecCccccccccccccccccccCCCcccccccch-hhheeecccc
Confidence 32211 1122 347777888777767666654 4566666544
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.2e-08 Score=95.85 Aligned_cols=191 Identities=14% Similarity=0.145 Sum_probs=132.1
Q ss_pred cccccccceEEEEEccCccchhhhcccCceeccCCC---cEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCC
Q 005352 216 AMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDG---SILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPE 292 (701)
Q Consensus 216 ~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~---~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~ 292 (701)
++.+...|.|.++........ -. .+.+..-.- .-.++.|++.+.-++++-.+|.+.+-+......
T Consensus 88 l~~a~a~G~i~~~r~~~~~ss--~~--L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~l-------- 155 (339)
T KOG0280|consen 88 LLDAHARGQIQLYRNDEDESS--VH--LRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVL-------- 155 (339)
T ss_pred eeeccccceEEEEeeccceee--ee--ecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeee--------
Confidence 344666788888865432210 00 011111111 245778888888888888888887444322210
Q ss_pred CCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC--eEEE
Q 005352 293 IDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLS 370 (701)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~--~l~s 370 (701)
+.++..+.|.-++.-.+|+... .+++
T Consensus 156 ----------------------------------------------------e~vq~wk~He~E~Wta~f~~~~pnlvyt 183 (339)
T KOG0280|consen 156 ----------------------------------------------------EKVQTWKVHEFEAWTAKFSDKEPNLVYT 183 (339)
T ss_pred ----------------------------------------------------eecccccccceeeeeeecccCCCceEEe
Confidence 3345678899999999998765 8999
Q ss_pred EECCCcEEEEECC-CCeeeeee--cCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCC-CCcEEEEecCCCcEEEEEEee
Q 005352 371 ASIDKTVRLWRVG-NDHCLRVF--PHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVL-SCHVVDWVDIRQIVTAVCYRP 446 (701)
Q Consensus 371 ~s~dg~I~iWd~~-~~~~~~~~--~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~-~~~~~~~~~~~~~i~~i~~sp 446 (701)
|+.|+.+..||++ .++++..- .|...|.+|.-+|..+.++++|+.|-.|++||.+ .++.+......+.|..+..+|
T Consensus 184 GgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p 263 (339)
T KOG0280|consen 184 GGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHP 263 (339)
T ss_pred cCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecc
Confidence 9999999999999 34444432 2888999999998788999999999999999999 466666666678999999999
Q ss_pred CCC--eEEEEecCCcEEEEECCCCeee
Q 005352 447 DGQ--GGIVGSMMGDCRFYNVSDNHLE 471 (701)
Q Consensus 447 ~g~--~l~~gs~dg~v~i~d~~~~~~~ 471 (701)
.-. .|+++-.+| .++.+.+.+...
T Consensus 264 ~~~~~lL~~CMh~G-~ki~~~~~~~~e 289 (339)
T KOG0280|consen 264 EIFHRLLAACMHNG-AKILDSSDKVLE 289 (339)
T ss_pred hhhhHHHHHHHhcC-ceEEEecccccc
Confidence 533 344444443 677777665543
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.4e-08 Score=103.67 Aligned_cols=278 Identities=14% Similarity=0.187 Sum_probs=185.5
Q ss_pred Ccceeeec--CccccccccccceEEEEEccCccc--------hhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCc
Q 005352 204 GEGERVRL--NEEDAMFCSKVQRVKVYHCKKRSK--------ELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGV 273 (701)
Q Consensus 204 ~~~~~~~~--~~~~~~~~~~d~~v~vw~~~~~~~--------~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~ 273 (701)
..-.++.. ...+++.|+.||.++|-.+..... ..+.+.+.|.+.||++.|.-+.|+.+.+.|-|...+|.
T Consensus 15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~Gl 94 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGL 94 (1189)
T ss_pred ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCce
Confidence 33344444 456788899999999998865432 23345677899999999999999999999999999999
Q ss_pred EEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCC
Q 005352 274 VRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGH 353 (701)
Q Consensus 274 I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 353 (701)
|.||-+-.+....+.. -.-.
T Consensus 95 IiVWmlykgsW~EEMi------------------------------------------------------------NnRn 114 (1189)
T KOG2041|consen 95 IIVWMLYKGSWCEEMI------------------------------------------------------------NNRN 114 (1189)
T ss_pred EEEEeeecccHHHHHh------------------------------------------------------------hCcC
Confidence 9999998775322110 0123
Q ss_pred ccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCc----
Q 005352 354 SGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH---- 428 (701)
Q Consensus 354 ~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~---- 428 (701)
++.|.+++|..+| .++..-.||.|.+=.+........--.......+.|++ |...++.+-.+|.+.+||....-
T Consensus 115 KSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~-D~~~~Lf~~ange~hlydnqgnF~~Kl 193 (1189)
T KOG2041|consen 115 KSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSE-DLEQALFKKANGETHLYDNQGNFERKL 193 (1189)
T ss_pred ccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecc-cHHHHHhhhcCCcEEEecccccHHHhh
Confidence 4568899999999 88888889988877665443222111222345788999 88888888889999999976431
Q ss_pred ---E-EEE----ecCCCcEEEEEEe--------eCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEE
Q 005352 429 ---V-VDW----VDIRQIVTAVCYR--------PDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGF 492 (701)
Q Consensus 429 ---~-~~~----~~~~~~i~~i~~s--------p~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l 492 (701)
+ +.. ......|..++|. |+...|+++..+|.+.+..-.+...... ....-.+.+.
T Consensus 194 ~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv---------~dtgm~~vga 264 (1189)
T KOG2041|consen 194 EKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVV---------VDTGMKIVGA 264 (1189)
T ss_pred hhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeE---------EecccEeecc
Confidence 1 111 1122346666664 4777899999999998876554332211 1112468889
Q ss_pred EEecCCCCEEEEEECC---------CcEEEEeCC-ccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEE
Q 005352 493 QFLPQDSSKVMVSCAD---------SQVRILQGP-NVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYM 555 (701)
Q Consensus 493 ~~~p~~~~~l~~~s~d---------g~I~iwd~~-~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~i 555 (701)
.|++ ++..|++++.+ +.|.+|..- .....++. ....|++++|-..|-.++.+- |+.|++
T Consensus 265 kWnh-~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gtlkv--pg~~It~lsWEg~gLriA~Av-dsfiyf 333 (1189)
T KOG2041|consen 265 KWNH-NGAVLAVCGNDSDADEPTDSNKVHFYSPYGHIVGTLKV--PGSCITGLSWEGTGLRIAIAV-DSFIYF 333 (1189)
T ss_pred eecC-CCcEEEEccCcccccCccccceEEEeccchhheEEEec--CCceeeeeEEcCCceEEEEEe-cceEEE
Confidence 9999 78888888764 245555432 22222332 566788888876665555442 444443
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.7e-09 Score=124.73 Aligned_cols=216 Identities=18% Similarity=0.260 Sum_probs=151.4
Q ss_pred ecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeec
Q 005352 210 RLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVD 289 (701)
Q Consensus 210 ~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~ 289 (701)
++...+.++|+.||.|++|.+.....-. ..+ .+....|+.+.|+.+|.....+..||.+.+|.+..
T Consensus 2217 Hp~~~~Yltgs~dgsv~~~~w~~~~~v~----~~r--t~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p-------- 2282 (2439)
T KOG1064|consen 2217 HPSDPYYLTGSQDGSVRMFEWGHGQQVV----CFR--TAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASP-------- 2282 (2439)
T ss_pred CCCCceEEecCCCceEEEEeccCCCeEE----Eee--ccCcchhhhhhhcccCCceeeeccCCceeecccCC--------
Confidence 3455677889999999999886543221 111 12338899999999999999999999999999751
Q ss_pred CCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCCeEE
Q 005352 290 IPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLL 369 (701)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~l~ 369 (701)
++....+.|.....++.|-. ..++
T Consensus 2283 -------------------------------------------------------k~~~s~qchnk~~~Df~Fi~-s~~~ 2306 (2439)
T KOG1064|consen 2283 -------------------------------------------------------KPYTSWQCHNKALSDFRFIG-SLLA 2306 (2439)
T ss_pred -------------------------------------------------------cceeccccCCccccceeeee-hhhh
Confidence 45556677888888888876 3455
Q ss_pred EEE---CCCcEEEEECCCCe---eeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEE
Q 005352 370 SAS---IDKTVRLWRVGNDH---CLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVC 443 (701)
Q Consensus 370 s~s---~dg~I~iWd~~~~~---~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~ 443 (701)
+++ .++.+.+||..-.. ++. ..|.+.++++++.| ...+|++|+.+|.|++||++..+....+..
T Consensus 2307 tag~s~d~~n~~lwDtl~~~~~s~v~-~~H~~gaT~l~~~P-~~qllisggr~G~v~l~D~rqrql~h~~~~-------- 2376 (2439)
T KOG1064|consen 2307 TAGRSSDNRNVCLWDTLLPPMNSLVH-TCHDGGATVLAYAP-KHQLLISGGRKGEVCLFDIRQRQLRHTFQA-------- 2376 (2439)
T ss_pred ccccCCCCCcccchhcccCcccceee-eecCCCceEEEEcC-cceEEEecCCcCcEEEeehHHHHHHHHhhh--------
Confidence 543 57899999964332 233 34999999999999 899999999999999999998877654432
Q ss_pred EeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCC
Q 005352 444 YRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADS 509 (701)
Q Consensus 444 ~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg 509 (701)
+. ...++++|+..|.++||++..-.+....+... . +. ..-...+.+..-+..+.|.+++.|+
T Consensus 2377 ~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~-a-k~-gfFr~~g~Q~~v~~~nrifsCgad~ 2438 (2439)
T KOG1064|consen 2377 LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEH-A-KQ-GFFRNIGMQINVGQCNRIFSCGADG 2438 (2439)
T ss_pred hh-hhheeeccCcccceEEEEccccchhhcCchhh-c-cc-chhhhcCceeeeccCceEEEecCCC
Confidence 33 56689999999999999998765443322211 1 11 0112222333333356667776665
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.1e-09 Score=101.13 Aligned_cols=248 Identities=18% Similarity=0.244 Sum_probs=154.1
Q ss_pred CCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecC
Q 005352 249 HDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTS 328 (701)
Q Consensus 249 H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (701)
....|+++.|...|.||+||...|.|.+|.-.... -.++
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~-~cey---------------------------------------- 63 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSY-GCEY---------------------------------------- 63 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeeccccc-ccch----------------------------------------
Confidence 34579999999999999999999999999754432 0001
Q ss_pred CccEEEcCCccccccCCCeEEEcCC------------ccCeEEEEEecCC---eEEEEECCCcEEEEECCCCeeeeeec-
Q 005352 329 ESACVVFPPKVFRILEKPLHEFHGH------------SGEILDLSWSKNN---YLLSASIDKTVRLWRVGNDHCLRVFP- 392 (701)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~h------------~~~I~~l~~s~~~---~l~s~s~dg~I~iWd~~~~~~~~~~~- 392 (701)
+....|++| ...|..|.|..++ .++..+.|++|++|.+........-.
T Consensus 64 ----------------kf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~n 127 (460)
T COG5170 64 ----------------KFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAEN 127 (460)
T ss_pred ----------------hhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhcc
Confidence 111222222 2457888888765 78888999999999987653321111
Q ss_pred ---------CCCCeEEEEEeeCCCCEEEE-EE-cCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEE
Q 005352 393 ---------HSNYVTCVHFNPVDDNYFIS-GS-IDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCR 461 (701)
Q Consensus 393 ---------h~~~V~~l~f~p~~~~~l~s-gs-~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~ 461 (701)
..+++++..- ++.- .+ .|..|.. ....+....|...|.++++..|.+.++++ .+-.|.
T Consensus 128 nls~~~~~~~~g~~~s~~~------l~lprls~hd~iiaa----~p~rvyaNaH~yhiNSiS~NsD~et~lSa-DdLrIN 196 (460)
T COG5170 128 NLSDSFHSPMGGPLTSTKE------LLLPRLSEHDEIIAA----KPCRVYANAHPYHINSISFNSDKETLLSA-DDLRIN 196 (460)
T ss_pred ccccccccccCCCcCCHHH------hhcccccccceEEEe----ccceeccccceeEeeeeeecCchheeeec-cceeee
Confidence 1222222110 0000 00 0111111 11122233577789999999988877765 467899
Q ss_pred EEECCCCeeeeeee-EEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCcc------ceeee----cc----
Q 005352 462 FYNVSDNHLELDAE-ICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV------IGKYK----GL---- 526 (701)
Q Consensus 462 i~d~~~~~~~~~~~-~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~------~~~~~----~~---- 526 (701)
+|++.-........ +.++ .......-|++..|+|.....++-++..|.|++-|++.. ...+. +.
T Consensus 197 LWnl~i~D~sFnIVDiKP~-nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~f 275 (460)
T COG5170 197 LWNLEIIDGSFNIVDIKPH-NMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDF 275 (460)
T ss_pred eccccccCCceEEEeccCc-cHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchh
Confidence 99987533221110 1111 011123457889999988899999999999999998721 11111 11
Q ss_pred --cCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCCCCc
Q 005352 527 --RRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAH 566 (701)
Q Consensus 527 --~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~~~ 566 (701)
.-...|..+.|+++|+||++-+. -+|+|||++..+.+..
T Consensus 276 f~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pik 316 (460)
T COG5170 276 FEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIK 316 (460)
T ss_pred HHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCce
Confidence 12357889999999999998765 5799999998876543
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.3e-06 Score=104.26 Aligned_cols=205 Identities=12% Similarity=0.093 Sum_probs=135.8
Q ss_pred CeEEEEEecCC-eEEEE-ECCCcEEEEECCCCeeeeeecC------------------CCCeEEEEEeeCCCCEEEEEEc
Q 005352 356 EILDLSWSKNN-YLLSA-SIDKTVRLWRVGNDHCLRVFPH------------------SNYVTCVHFNPVDDNYFISGSI 415 (701)
Q Consensus 356 ~I~~l~~s~~~-~l~s~-s~dg~I~iWd~~~~~~~~~~~h------------------~~~V~~l~f~p~~~~~l~sgs~ 415 (701)
....|++.+++ .|+.+ ..++.|+++|+.++... ++.. -.....++|+|.++.++++...
T Consensus 625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~-tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~ 703 (1057)
T PLN02919 625 RPQGLAYNAKKNLLYVADTENHALREIDFVNETVR-TLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG 703 (1057)
T ss_pred CCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEE-EEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC
Confidence 35678888876 45444 45678999998776532 2210 1234689999855667777778
Q ss_pred CCcEEEEeCCCCcEEEEecC---------------CCcEEEEEEeeCCCeEE-EEecCCcEEEEECCCCeeeeeeeE---
Q 005352 416 DGKVRIWAVLSCHVVDWVDI---------------RQIVTAVCYRPDGQGGI-VGSMMGDCRFYNVSDNHLELDAEI--- 476 (701)
Q Consensus 416 dg~v~iwd~~~~~~~~~~~~---------------~~~i~~i~~sp~g~~l~-~gs~dg~v~i~d~~~~~~~~~~~~--- 476 (701)
++.|++||..++.+..+.+. -.....|+++|+++.|+ +-+.++.|++||+.++........
T Consensus 704 ~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~ 783 (1057)
T PLN02919 704 QHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPT 783 (1057)
T ss_pred CCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccc
Confidence 89999999988765433211 12356799999998555 455678999999987653211000
Q ss_pred ------Eeecc----cCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCcccee-eeccc------------CCCCeE
Q 005352 477 ------CVHSK----KKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGK-YKGLR------------RSGNQL 533 (701)
Q Consensus 477 ------~~~~~----~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~-~~~~~------------~~~~v~ 533 (701)
..... .........++++.+ ++.++++-..++.|++||..+.... +.+.+ ......
T Consensus 784 ~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~-dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~ 862 (1057)
T PLN02919 784 FSDNLFKFGDHDGVGSEVLLQHPLGVLCAK-DGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPA 862 (1057)
T ss_pred cCcccccccCCCCchhhhhccCCceeeEeC-CCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCce
Confidence 00000 001112346888988 6778888888999999998643322 11111 123567
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 534 SACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 534 ~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
.++++++|+.+++-+.++.|++||+.+++
T Consensus 863 GIavd~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 863 GLALGENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred EEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence 89999999999998999999999998875
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.8e-09 Score=107.59 Aligned_cols=210 Identities=17% Similarity=0.261 Sum_probs=148.0
Q ss_pred CCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCC-------Ceeeeeec-CCCCeEEEEEeeCCCCEEEEEEc
Q 005352 345 KPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGN-------DHCLRVFP-HSNYVTCVHFNPVDDNYFISGSI 415 (701)
Q Consensus 345 ~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~-------~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~ 415 (701)
-.++.|.||...|..++--.+. -+++++.|++|++|.++. ..|..++. |..+|..+.|.. +.++++++
T Consensus 726 irL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~-~lr~i~Sc-- 802 (1034)
T KOG4190|consen 726 IRLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLA-DLRSIASC-- 802 (1034)
T ss_pred eeeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeee-ccceeeec--
Confidence 4567889999999998755554 999999999999999863 24566665 999999999997 77777764
Q ss_pred CCcEEEEeCCCCcEEE---EecCCCcEEEEEEee--CCCeEEEE-ecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCe
Q 005352 416 DGKVRIWAVLSCHVVD---WVDIRQIVTAVCYRP--DGQGGIVG-SMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRI 489 (701)
Q Consensus 416 dg~v~iwd~~~~~~~~---~~~~~~~i~~i~~sp--~g~~l~~g-s~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i 489 (701)
||.|.+||.--++.+. +....+.+..+..-| +...++.| +...+|+++|.+......+.+.+.. ..+...+
T Consensus 803 D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna---~~Pna~~ 879 (1034)
T KOG4190|consen 803 DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNA---PGPNALT 879 (1034)
T ss_pred cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccC---CCCchhe
Confidence 8899999987776542 222334444444444 34445554 6788999999998887666554422 2344567
Q ss_pred eEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEE-EeCCCCC
Q 005352 490 TGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYM-WNCIGHE 562 (701)
Q Consensus 490 ~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~i-Wd~~~~~ 562 (701)
.+++..+ .++.++++-.+|.|.+.|.++....-...........++ .|..+.|+....|.++.+ |..-++.
T Consensus 880 R~iaVa~-~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgi 951 (1034)
T KOG4190|consen 880 RAIAVAD-KGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGI 951 (1034)
T ss_pred eEEEecc-CcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCe
Confidence 8888888 799999999999999999987654332222222222332 356677887778888888 8655543
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.9e-07 Score=94.29 Aligned_cols=319 Identities=15% Similarity=0.203 Sum_probs=181.8
Q ss_pred eeecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeC-----------CCcEEE
Q 005352 208 RVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGD-----------DGVVRL 276 (701)
Q Consensus 208 ~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~-----------Dg~I~i 276 (701)
..++.+.++++-.. ..|.+|- ...+..+.. + .|.+ |.-+.|||+.+||+|-+. -..++|
T Consensus 217 ~wSP~GTYL~t~Hk-~GI~lWG----G~~f~r~~R---F-~Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~I 286 (698)
T KOG2314|consen 217 RWSPKGTYLVTFHK-QGIALWG----GESFDRIQR---F-YHPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLII 286 (698)
T ss_pred EecCCceEEEEEec-cceeeec----CccHHHHHh---c-cCCC-ceeeecCCccceEEEecCCccccCcccCCCceEEE
Confidence 34555666665443 3466773 122222211 1 2554 889999999999999764 157999
Q ss_pred EEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccC
Q 005352 277 WQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGE 356 (701)
Q Consensus 277 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 356 (701)
||+.+|.....+.....+... .-.+.++-+....... ....+.++....+.+.++.-. .-..
T Consensus 287 WDI~tG~lkrsF~~~~~~~~~----------WP~frWS~DdKy~Arm----~~~sisIyEtpsf~lld~Ksl----ki~g 348 (698)
T KOG2314|consen 287 WDIATGLLKRSFPVIKSPYLK----------WPIFRWSHDDKYFARM----TGNSISIYETPSFMLLDKKSL----KISG 348 (698)
T ss_pred EEccccchhcceeccCCCccc----------cceEEeccCCceeEEe----ccceEEEEecCceeeeccccc----CCcc
Confidence 999999988877654221110 0011111111111111 112333333333333222111 2356
Q ss_pred eEEEEEecCC-eEEEEEC-----CCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEE----------cCCcE
Q 005352 357 ILDLSWSKNN-YLLSASI-----DKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGS----------IDGKV 419 (701)
Q Consensus 357 I~~l~~s~~~-~l~s~s~-----dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs----------~dg~v 419 (701)
|....|+|.+ .|+-=.. -..+.+-.+.+++.+++-. ++-.=..+.|-. ++.+|+.-- .-..+
T Consensus 349 Ir~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk-~gdyLcvkvdR~tK~~~~g~f~n~ 427 (698)
T KOG2314|consen 349 IRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQK-SGDYLCVKVDRHTKSKVKGQFSNL 427 (698)
T ss_pred ccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEecc-CCcEEEEEEEeeccccccceEeeE
Confidence 8888999987 4442221 1346666666666665544 211112234444 555555321 12246
Q ss_pred EEEeCCCCcE-EEEecCCCcEEEEEEeeCCCeEEEEec---CCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEe
Q 005352 420 RIWAVLSCHV-VDWVDIRQIVTAVCYRPDGQGGIVGSM---MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFL 495 (701)
Q Consensus 420 ~iwd~~~~~~-~~~~~~~~~i~~i~~sp~g~~l~~gs~---dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~ 495 (701)
-|+.++...+ +........|...+|-|.|+.+++-+. ..++.+|.+.++...... .+.......+.+.|+
T Consensus 428 eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~l------Vk~~dk~~~N~vfws 501 (698)
T KOG2314|consen 428 EIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSL------VKELDKKFANTVFWS 501 (698)
T ss_pred EEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhh------hhhhcccccceEEEc
Confidence 6777776553 466778889999999999998877543 456889988753221111 111122456789999
Q ss_pred cCCCCEEEEEE---CCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeC------CCcEEEEeCCCCC
Q 005352 496 PQDSSKVMVSC---ADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGE------DSNVYMWNCIGHE 562 (701)
Q Consensus 496 p~~~~~l~~~s---~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~------Dg~I~iWd~~~~~ 562 (701)
| .|++++++. ..|.+.++|......+..........+.+.|.|.|+|++|++. |.--+||++.+..
T Consensus 502 P-kG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqGrl 576 (698)
T KOG2314|consen 502 P-KGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQGRL 576 (698)
T ss_pred C-CCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeeehhhhccccceEEEEeecHH
Confidence 9 677776654 4789999998742222233333345678899999999999975 4446777776543
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=7.6e-07 Score=96.36 Aligned_cols=173 Identities=14% Similarity=0.102 Sum_probs=103.3
Q ss_pred eEEEEEecCC-eEEEEE-CCC----cEEEEECCCC---eeeeeecC-CCCeEEEEEeeCCCCEEEEEE-cCCcEEEE--e
Q 005352 357 ILDLSWSKNN-YLLSAS-IDK----TVRLWRVGND---HCLRVFPH-SNYVTCVHFNPVDDNYFISGS-IDGKVRIW--A 423 (701)
Q Consensus 357 I~~l~~s~~~-~l~s~s-~dg----~I~iWd~~~~---~~~~~~~h-~~~V~~l~f~p~~~~~l~sgs-~dg~v~iw--d 423 (701)
....+|+|+| .|+..+ .+| .+.+|++..+ ........ .......+|+| +++.|+..+ .+|...+| +
T Consensus 233 ~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSP-DG~~Laf~s~~~g~~~ly~~~ 311 (428)
T PRK01029 233 QLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSP-DGTRLVFVSNKDGRPRIYIMQ 311 (428)
T ss_pred ccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECC-CCCEEEEEECCCCCceEEEEE
Confidence 4467999999 665444 223 3455777653 33333332 23456789999 998877665 45655555 4
Q ss_pred CCC--CcEEEEecCCCcEEEEEEeeCCCeEEEEecC---CcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCC
Q 005352 424 VLS--CHVVDWVDIRQIVTAVCYRPDGQGGIVGSMM---GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQD 498 (701)
Q Consensus 424 ~~~--~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~d---g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~ 498 (701)
+.. +....+......+....|+|||+.|+..+.+ ..|.+||+.+++.... .. ....+....|+| +
T Consensus 312 ~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~L-----t~----~~~~~~~p~wSp-D 381 (428)
T PRK01029 312 IDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQL-----TT----SPENKESPSWAI-D 381 (428)
T ss_pred CcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEc-----cC----CCCCccceEECC-C
Confidence 432 2233333444567788999999988876543 4689999988765321 11 112456788999 5
Q ss_pred CCEEEEEEC---CCcEEEEeCCccceeeecccCCCCeEEEEEecCC
Q 005352 499 SSKVMVSCA---DSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDG 541 (701)
Q Consensus 499 ~~~l~~~s~---dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg 541 (701)
++.|+.... ...|+++|+........ ....+.+...+|+|-.
T Consensus 382 G~~L~f~~~~~g~~~L~~vdl~~g~~~~L-t~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 382 SLHLVYSAGNSNESELYLISLITKKTRKI-VIGSGEKRFPSWGAFP 426 (428)
T ss_pred CCEEEEEECCCCCceEEEEECCCCCEEEe-ecCCCcccCceecCCC
Confidence 666654433 35688888765432221 1234455667777643
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=4.3e-07 Score=98.26 Aligned_cols=203 Identities=13% Similarity=0.117 Sum_probs=125.2
Q ss_pred EcCCccCeEEEEEecCC-e--E-EEEECCC--cEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEc-----CCc
Q 005352 350 FHGHSGEILDLSWSKNN-Y--L-LSASIDK--TVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSI-----DGK 418 (701)
Q Consensus 350 ~~~h~~~I~~l~~s~~~-~--l-~s~s~dg--~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~-----dg~ 418 (701)
+......+..-.|+|+| . + ++...++ .|.+.++..++........+.....+|+| |++.|+..+. +..
T Consensus 180 lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSP-DG~~Laf~s~~~g~~di~ 258 (428)
T PRK01029 180 LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSP-RKKLLAFISDRYGNPDLF 258 (428)
T ss_pred cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECC-CCCEEEEEECCCCCccee
Confidence 33345566778999997 3 3 2444444 57777998887665555566667789999 9988876553 223
Q ss_pred EEEEeCCC---CcEEEEecCC-CcEEEEEEeeCCCeEEEEe-cCCcEEEEE--CCCCeeeeeeeEEeecccCCCCCCeeE
Q 005352 419 VRIWAVLS---CHVVDWVDIR-QIVTAVCYRPDGQGGIVGS-MMGDCRFYN--VSDNHLELDAEICVHSKKKAPCKRITG 491 (701)
Q Consensus 419 v~iwd~~~---~~~~~~~~~~-~~i~~i~~sp~g~~l~~gs-~dg~v~i~d--~~~~~~~~~~~~~~~~~~~~~~~~i~~ 491 (701)
+.+|++.. ++........ ......+|+|||+.|+..+ .+|...+|. +....... . .+ ......+..
T Consensus 259 ~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~-~--~l----t~~~~~~~~ 331 (428)
T PRK01029 259 IQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSP-R--LL----TKKYRNSSC 331 (428)
T ss_pred EEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccce-E--Ee----ccCCCCccc
Confidence 45577765 2333333332 3456789999999887765 466555554 43211000 0 01 111234567
Q ss_pred EEEecCCCCEEEEEECC---CcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeC---CCcEEEEeCCCCC
Q 005352 492 FQFLPQDSSKVMVSCAD---SQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGE---DSNVYMWNCIGHE 562 (701)
Q Consensus 492 l~~~p~~~~~l~~~s~d---g~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~---Dg~I~iWd~~~~~ 562 (701)
..|+| +++.|+..+.+ ..|.+||+......... .....+....|+|||++|+..+. ...|++|++.+++
T Consensus 332 p~wSP-DG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt-~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~ 406 (428)
T PRK01029 332 PAWSP-DGKKIAFCSVIKGVRQICVYDLATGRDYQLT-TSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKK 406 (428)
T ss_pred eeECC-CCCEEEEEEcCCCCcEEEEEECCCCCeEEcc-CCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 89999 56766665542 46899998755433222 12345677899999998875433 3568889988765
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.7e-06 Score=83.40 Aligned_cols=188 Identities=15% Similarity=0.243 Sum_probs=119.0
Q ss_pred CeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec--------CCCCeEEEEEeeCC-----CCEEEEEEcCCcEEE
Q 005352 356 EILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP--------HSNYVTCVHFNPVD-----DNYFISGSIDGKVRI 421 (701)
Q Consensus 356 ~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~--------h~~~V~~l~f~p~~-----~~~l~sgs~dg~v~i 421 (701)
.=..++|||++ .|+.+...|+|+++|+....+. .+. ....|..+.|.+.. ...|++-...|.++-
T Consensus 45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf-~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~S 123 (282)
T PF15492_consen 45 QWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELF-VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRS 123 (282)
T ss_pred hheEEEECCCCcEEEEEcCCCeEEEEecccceeE-EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeee
Confidence 45678999999 8999999999999999764433 332 33567777776522 225666667888887
Q ss_pred EeCCCC-----cEEE---Ee-cCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEE
Q 005352 422 WAVLSC-----HVVD---WV-DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGF 492 (701)
Q Consensus 422 wd~~~~-----~~~~---~~-~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l 492 (701)
|-+..+ +... +. .....|+++.|+|..+.|++|+.... .++ ........+++.
T Consensus 124 y~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~------------~s~a~~~GLtaW 185 (282)
T PF15492_consen 124 YLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDG------------MSKASSCGLTAW 185 (282)
T ss_pred EEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCc------------cccccccCceEE
Confidence 765322 1111 11 23678999999999999998876432 000 011223445555
Q ss_pred EEecCCCCEEEEEECCCcE-------EEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 493 QFLPQDSSKVMVSCADSQV-------RILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 493 ~~~p~~~~~l~~~s~dg~I-------~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
.+..+.+.+..+...+..+ .+|.+.+.............|..|+.||||..||+...+|.|.+|++-+-.
T Consensus 186 RiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~ 262 (282)
T PF15492_consen 186 RILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLR 262 (282)
T ss_pred EEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcch
Confidence 5555444444444432222 233322211111112256789999999999999999999999999987755
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.1e-07 Score=96.15 Aligned_cols=183 Identities=14% Similarity=0.156 Sum_probs=146.2
Q ss_pred eEEEEECCCcEEEEECCCCeeeeeec----CCCCeEEEEEee-------------------CCCCEEEEEEcCCcEEEEe
Q 005352 367 YLLSASIDKTVRLWRVGNDHCLRVFP----HSNYVTCVHFNP-------------------VDDNYFISGSIDGKVRIWA 423 (701)
Q Consensus 367 ~l~s~s~dg~I~iWd~~~~~~~~~~~----h~~~V~~l~f~p-------------------~~~~~l~sgs~dg~v~iwd 423 (701)
+++....||.+++|+...++....|. ..+..++..|.- .+...++-|...|.|.+|+
T Consensus 7 ~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys 86 (541)
T KOG4547|consen 7 YFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLYS 86 (541)
T ss_pred eEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEEE
Confidence 89999999999999999998888775 345566666631 1345677888899999999
Q ss_pred CCCCcEEEEe---cCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCC
Q 005352 424 VLSCHVVDWV---DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSS 500 (701)
Q Consensus 424 ~~~~~~~~~~---~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~ 500 (701)
...+++...+ .|.+.|.++.++.+-..|.+++.|+.+..|+......... .......+.+++++| ++.
T Consensus 87 ~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~--------~~~~~~~~~sl~is~-D~~ 157 (541)
T KOG4547|consen 87 VAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRI--------WKEQKPLVSSLCISP-DGK 157 (541)
T ss_pred ecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeee--------eccCCCccceEEEcC-CCC
Confidence 9999887544 4788999999999999999999999999999987765432 223345688899999 588
Q ss_pred EEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecC-----CCEEEE-EeCCCcEEEEeCCC
Q 005352 501 KVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSD-----GKHIVS-AGEDSNVYMWNCIG 560 (701)
Q Consensus 501 ~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~d-----g~~l~s-gs~Dg~I~iWd~~~ 560 (701)
.+++++ ++|++||+.+........+|.++|.+++|..+ |.++++ +..+..|.+|-+..
T Consensus 158 ~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 158 ILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred EEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 887776 58999999987777777779999999999887 666655 45667788998765
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.80 E-value=6.9e-06 Score=86.64 Aligned_cols=270 Identities=16% Similarity=0.207 Sum_probs=156.8
Q ss_pred eecCcccccccc----ccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeC-CCcEEEEEeecCe
Q 005352 209 VRLNEEDAMFCS----KVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGD-DGVVRLWQVVEDE 283 (701)
Q Consensus 209 ~~~~~~~~~~~~----~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~-Dg~I~iWd~~~~~ 283 (701)
+++++..+.+.. ..+.|..|.+......+..+ ............++++|++++|+++.. +|.|.++++....
T Consensus 44 ~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~---~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g 120 (345)
T PF10282_consen 44 VSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLL---NSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDG 120 (345)
T ss_dssp E-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEE---EEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTS
T ss_pred EEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEe---eeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCc
Confidence 344455444433 46788888876543222222 222223445668999999999999875 8999999998743
Q ss_pred eeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEe
Q 005352 284 RLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS 363 (701)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s 363 (701)
.+..... .+....... .+ -........++.++
T Consensus 121 ~l~~~~~-----------------------------~~~~~g~g~----------------~~---~rq~~~h~H~v~~~ 152 (345)
T PF10282_consen 121 SLGEVVQ-----------------------------TVRHEGSGP----------------NP---DRQEGPHPHQVVFS 152 (345)
T ss_dssp EEEEEEE-----------------------------EEESEEEES----------------ST---TTTSSTCEEEEEE-
T ss_pred ccceeee-----------------------------ecccCCCCC----------------cc---cccccccceeEEEC
Confidence 2221100 000000000 00 00122446789999
Q ss_pred cCC-eEEEEE-CCCcEEEEECCCCe--eee----eecCCCCeEEEEEeeCCCCEEEEEE-cCCcEEEEeCC--CCcEE--
Q 005352 364 KNN-YLLSAS-IDKTVRLWRVGNDH--CLR----VFPHSNYVTCVHFNPVDDNYFISGS-IDGKVRIWAVL--SCHVV-- 430 (701)
Q Consensus 364 ~~~-~l~s~s-~dg~I~iWd~~~~~--~~~----~~~h~~~V~~l~f~p~~~~~l~sgs-~dg~v~iwd~~--~~~~~-- 430 (701)
|++ ++++.. ....|.+|++.... ... .+......+.+.|+| ++++++... .++.|.++++. ++...
T Consensus 153 pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~p-dg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~ 231 (345)
T PF10282_consen 153 PDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSP-DGKYAYVVNELSNTVSVFDYDPSDGSLTEI 231 (345)
T ss_dssp TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-T-TSSEEEEEETTTTEEEEEEEETTTTEEEEE
T ss_pred CCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcC-CcCEEEEecCCCCcEEEEeecccCCceeEE
Confidence 998 565544 34579999997665 322 223566789999999 887776554 57889999988 44322
Q ss_pred EEec-------CCCcEEEEEEeeCCCeEEEEec-CCcEEEEECCC--CeeeeeeeEEeecccCCCCCCeeEEEEecCCCC
Q 005352 431 DWVD-------IRQIVTAVCYRPDGQGGIVGSM-MGDCRFYNVSD--NHLELDAEICVHSKKKAPCKRITGFQFLPQDSS 500 (701)
Q Consensus 431 ~~~~-------~~~~i~~i~~sp~g~~l~~gs~-dg~v~i~d~~~--~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~ 500 (701)
.... .......|.++|+|++|+++.. .+.|.+|++.. +.+.....+.. .......+.++| +++
T Consensus 232 ~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~------~G~~Pr~~~~s~-~g~ 304 (345)
T PF10282_consen 232 QTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPT------GGKFPRHFAFSP-DGR 304 (345)
T ss_dssp EEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEE------SSSSEEEEEE-T-TSS
T ss_pred EEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeC------CCCCccEEEEeC-CCC
Confidence 1111 1125889999999999888764 67799999943 44433222222 123478899999 677
Q ss_pred EEEEEE-CCCcEEEEeCC--ccceeeecc-cCCCCeEEEEE
Q 005352 501 KVMVSC-ADSQVRILQGP--NVIGKYKGL-RRSGNQLSACF 537 (701)
Q Consensus 501 ~l~~~s-~dg~I~iwd~~--~~~~~~~~~-~~~~~v~~l~~ 537 (701)
+|+++. .++.|.+|++. +........ .......|+.|
T Consensus 305 ~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 305 YLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp EEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred EEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 777766 57789998764 333222221 13344555554
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.78 E-value=5.5e-08 Score=103.46 Aligned_cols=286 Identities=15% Similarity=0.215 Sum_probs=171.1
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeee--cCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeec
Q 005352 250 DGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEV--DIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRT 327 (701)
Q Consensus 250 ~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (701)
.+++.++..+|.|+-+|.++.-| +.+-|+...-....+ .+......-..+.+......-.+..+..+.. ++.+...
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkai-iwnlA~s 101 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAI-IWNLAKS 101 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhh-hhhhhcC
Confidence 45788899999999999999877 445566543211111 1111112222333333333333333332222 2222222
Q ss_pred CCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC--eEEEEECCCcEEEEECCCCe-eeeeec-CCCCeEEEEEe
Q 005352 328 SESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLSASIDKTVRLWRVGNDH-CLRVFP-HSNYVTCVHFN 403 (701)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~--~l~s~s~dg~I~iWd~~~~~-~~~~~~-h~~~V~~l~f~ 403 (701)
++. ..-..+.||...|+++.|+++. .+++++.|-.|..||+++.. ++..+. -......++|+
T Consensus 102 s~~--------------aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwn 167 (1081)
T KOG0309|consen 102 SSN--------------AIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWN 167 (1081)
T ss_pred Ccc--------------ceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeec
Confidence 221 2234578999999999999988 99999999999999998864 333333 34556789999
Q ss_pred eCCCCEEEEEEcCCcEEEEeCCCCcEE--EEecCCCcEEEEEEee-CCCeEEEEecCCcEEEEECCCCeeeeeeeEEeec
Q 005352 404 PVDDNYFISGSIDGKVRIWAVLSCHVV--DWVDIRQIVTAVCYRP-DGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHS 480 (701)
Q Consensus 404 p~~~~~l~sgs~dg~v~iwd~~~~~~~--~~~~~~~~i~~i~~sp-~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~ 480 (701)
-.+++.+++. ..+.|++||++.+... ....+-..|+.+.|.. .-..+.+.+.||+|++||........+.
T Consensus 168 yk~p~vlass-hg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~------ 240 (1081)
T KOG0309|consen 168 YKDPNVLASS-HGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKR------ 240 (1081)
T ss_pred ccCcchhhhc-cCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccce------
Confidence 8677766654 4667999999977533 4445666777777765 2346788899999999998764322111
Q ss_pred ccCCCCCCeeEEEEecCCCCEEEE-EECCCcEEEEe------------CCccceeeecccCCCCeEEEEEecCC------
Q 005352 481 KKKAPCKRITGFQFLPQDSSKVMV-SCADSQVRILQ------------GPNVIGKYKGLRRSGNQLSACFTSDG------ 541 (701)
Q Consensus 481 ~~~~~~~~i~~l~~~p~~~~~l~~-~s~dg~I~iwd------------~~~~~~~~~~~~~~~~v~~l~~s~dg------ 541 (701)
......+|..-.+.|....+.+. .-.+..+.+++ ..+....|.+ |...|...-|-..+
T Consensus 241 -~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~G--H~D~V~eFlWR~r~e~~~d~ 317 (1081)
T KOG0309|consen 241 -TVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVG--HDDVVLEFLWRKRKECDGDY 317 (1081)
T ss_pred -eccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecC--cchHHHHHhhhhcccccCCC
Confidence 11222344444455532222221 11222333332 2334444444 77777665553322
Q ss_pred ----CEEEEEeCCCcEEEEeCCCC
Q 005352 542 ----KHIVSAGEDSNVYMWNCIGH 561 (701)
Q Consensus 542 ----~~l~sgs~Dg~I~iWd~~~~ 561 (701)
-.|+|-+.|..+++|-+.+.
T Consensus 318 d~rdfQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 318 DSRDFQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred CccceeEEEeecCCceEeeeccHH
Confidence 37999999999999988754
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.77 E-value=2e-06 Score=87.59 Aligned_cols=107 Identities=12% Similarity=0.163 Sum_probs=87.3
Q ss_pred EEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCC----cEEE
Q 005352 348 HEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDG----KVRI 421 (701)
Q Consensus 348 ~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg----~v~i 421 (701)
..+.+.-+.|.+++.+++| +++.+.....|.+.|+.+++....-+ ..+-|+.+.|+| +..+||-+--+| .|++
T Consensus 395 kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Ikl 473 (668)
T COG4946 395 KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKL 473 (668)
T ss_pred EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcC-CceeEEEecCcceeeeeEEE
Confidence 4445566789999999999 78888888899999999997654433 567899999999 999999877665 5899
Q ss_pred EeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEe
Q 005352 422 WAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGS 455 (701)
Q Consensus 422 wd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs 455 (701)
+|+.+++..........=.+-+|.|++++|.--+
T Consensus 474 ydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 474 YDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred EecCCCeEEEecCCcccccCcccCCCCcEEEEEe
Confidence 9999999888777666667788999999877654
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.76 E-value=2e-06 Score=89.25 Aligned_cols=230 Identities=14% Similarity=0.222 Sum_probs=142.7
Q ss_pred EEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccE
Q 005352 253 ILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESAC 332 (701)
Q Consensus 253 I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (701)
=+-+.|||-|.||+|-..-| |.+|-=.+-.+++.+
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF-------------------------------------------- 247 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRF-------------------------------------------- 247 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhc--------------------------------------------
Confidence 46789999999999999877 789964333222111
Q ss_pred EEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEEC-----------CCcEEEEECCCCeeeeeecC---CCCe
Q 005352 333 VVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASI-----------DKTVRLWRVGNDHCLRVFPH---SNYV 397 (701)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~-----------dg~I~iWd~~~~~~~~~~~h---~~~V 397 (701)
.| ..|.-+.|||+. ||+|=+. ...++|||+.+|...+.|.. ...+
T Consensus 248 -------------------~H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~ 307 (698)
T KOG2314|consen 248 -------------------YH-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLK 307 (698)
T ss_pred -------------------cC-CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccc
Confidence 13 357788999988 8887653 25799999999999888863 1222
Q ss_pred -EEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEec-CCCcEEEEEEeeCCCeEEEEec-----CCcEEEEECCCCee
Q 005352 398 -TCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVD-IRQIVTAVCYRPDGQGGIVGSM-----MGDCRFYNVSDNHL 470 (701)
Q Consensus 398 -~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~-~~~~i~~i~~sp~g~~l~~gs~-----dg~v~i~d~~~~~~ 470 (701)
.-+.|+. +++++|.-.. ..|.||+..+-.++.... .-..|....|+|.++.||-=+. -..+.+..+...+.
T Consensus 308 WP~frWS~-DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~ 385 (698)
T KOG2314|consen 308 WPIFRWSH-DDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKRE 385 (698)
T ss_pred cceEEecc-CCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccce
Confidence 2467888 8999988775 569999988755543322 2356888999998777664322 12244444444332
Q ss_pred eeeeeEEeecccCCCCCCeeE--EEEecCCCCEEEEEE----------CCCcEEEEeCCccceeeecccCCCCeEEEEEe
Q 005352 471 ELDAEICVHSKKKAPCKRITG--FQFLPQDSSKVMVSC----------ADSQVRILQGPNVIGKYKGLRRSGNQLSACFT 538 (701)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~i~~--l~~~p~~~~~l~~~s----------~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s 538 (701)
+....+ ..|.. +.|-. ++.+|++-- .-..+-|+.++...-..........|...+|-
T Consensus 386 iRt~nl----------fnVsDckLhWQk-~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWE 454 (698)
T KOG2314|consen 386 IRTKNL----------FNVSDCKLHWQK-SGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWE 454 (698)
T ss_pred eeeccc----------eeeeccEEEecc-CCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeec
Confidence 211111 11222 23333 455554421 12235555555433333333356789999999
Q ss_pred cCCCEEEEEeC---CCcEEEEeCCC
Q 005352 539 SDGKHIVSAGE---DSNVYMWNCIG 560 (701)
Q Consensus 539 ~dg~~l~sgs~---Dg~I~iWd~~~ 560 (701)
|.|..+++-+. ..++.+|.+++
T Consensus 455 P~gdkF~vi~g~~~k~tvsfY~~e~ 479 (698)
T KOG2314|consen 455 PHGDKFAVISGNTVKNTVSFYAVET 479 (698)
T ss_pred cCCCeEEEEEccccccceeEEEeec
Confidence 99987776543 25678887774
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.5e-07 Score=88.68 Aligned_cols=196 Identities=14% Similarity=0.198 Sum_probs=118.5
Q ss_pred eEEEEEecCCeEEEEECCCcEEEEECCCCeeeeeec---CCCCeEEEEEe---------eCCCCEEEEEEcCCcEEEEeC
Q 005352 357 ILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP---HSNYVTCVHFN---------PVDDNYFISGSIDGKVRIWAV 424 (701)
Q Consensus 357 I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~---h~~~V~~l~f~---------p~~~~~l~sgs~dg~v~iwd~ 424 (701)
|+.+.++.+..|+++..++.+......++.+..... ..++..+++.+ ...++-+++++.||.+.+++.
T Consensus 39 ~~~~~~v~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~ 118 (319)
T KOG4714|consen 39 LSKVSLSAEYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFST 118 (319)
T ss_pred EEEeechhhheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEec
Confidence 555555555577777777666665554443333222 11122222211 124677999999999999998
Q ss_pred CCCcEE-EEe-cCCCcEEEEEEeeCCCeEEEEec-----CCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecC
Q 005352 425 LSCHVV-DWV-DIRQIVTAVCYRPDGQGGIVGSM-----MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQ 497 (701)
Q Consensus 425 ~~~~~~-~~~-~~~~~i~~i~~sp~g~~l~~gs~-----dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~ 497 (701)
+.-..+ ..+ .......+.++...++.+.++.. -+..+.|+++..+... ........+++++-+|.
T Consensus 119 ~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~--------~~~~~~~~v~~l~~hp~ 190 (319)
T KOG4714|consen 119 DKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLI--------PSKKALDAVTALCSHPA 190 (319)
T ss_pred hHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccc--------ccccccccchhhhCCcc
Confidence 762211 111 11111223344444555444321 2334555554332211 11112234899999998
Q ss_pred CCCEEEEEECCCcEEEEeCCccceeee-cccCCCCeEEEEEec-CCCEEEEEeCCCcEEEEeCCC
Q 005352 498 DSSKVMVSCADSQVRILQGPNVIGKYK-GLRRSGNQLSACFTS-DGKHIVSAGEDSNVYMWNCIG 560 (701)
Q Consensus 498 ~~~~l~~~s~dg~I~iwd~~~~~~~~~-~~~~~~~v~~l~~s~-dg~~l~sgs~Dg~I~iWd~~~ 560 (701)
..+.+++|+.||.+-+||.++...... ...|...+..+-|+| ++..|+++++||.+..||-.+
T Consensus 191 qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 191 QQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 788899999999999999987633322 234889999999999 568999999999999999665
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=9.1e-07 Score=95.01 Aligned_cols=283 Identities=13% Similarity=0.159 Sum_probs=185.5
Q ss_pred ceeeecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccC------------CCEEEEEeCCCc
Q 005352 206 GERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPD------------GQYLASAGDDGV 273 (701)
Q Consensus 206 ~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd------------g~~Lasgs~Dg~ 273 (701)
.+++..+++.+++-+....|.|-|.. .....|.+.-|+..|+.+.|.|- .-+||++...|.
T Consensus 18 ~~A~Dw~~~GLiAygshslV~VVDs~-------s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~Gr 90 (1062)
T KOG1912|consen 18 RNAADWSPSGLIAYGSHSLVSVVDSR-------SLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGR 90 (1062)
T ss_pred ccccccCccceEEEecCceEEEEehh-------hhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCc
Confidence 45677788888887777788888643 33344677889999999999873 125788888999
Q ss_pred EEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCC
Q 005352 274 VRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGH 353 (701)
Q Consensus 274 I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 353 (701)
|.+||+..... +..+..|
T Consensus 91 Iil~d~~~~s~--------------------------------------------------------------~~~l~~~ 108 (1062)
T KOG1912|consen 91 IILVDFVLASV--------------------------------------------------------------INWLSHS 108 (1062)
T ss_pred EEEEEehhhhh--------------------------------------------------------------hhhhcCC
Confidence 99999876532 2334567
Q ss_pred ccCeEEEEEecCC-----eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCC-
Q 005352 354 SGEILDLSWSKNN-----YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS- 426 (701)
Q Consensus 354 ~~~I~~l~~s~~~-----~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~- 426 (701)
.++|.+++|-+.. .|++-....+|.+|+..+|+.+..+. ......|+.+.|.+.+.|..-+..|.+.+-+.-.
T Consensus 109 ~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~ 188 (1062)
T KOG1912|consen 109 NDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGL 188 (1062)
T ss_pred CcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCC
Confidence 7888999987642 66677778899999999999988877 4456677999998888888888888887776522
Q ss_pred ------CcEEEEe-cCCC-----------------c--------EEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeee
Q 005352 427 ------CHVVDWV-DIRQ-----------------I--------VTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDA 474 (701)
Q Consensus 427 ------~~~~~~~-~~~~-----------------~--------i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~ 474 (701)
++..++. .|.+ + ...++|+|.-+.++.......+.++|++-.......
T Consensus 189 sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vv 268 (1062)
T KOG1912|consen 189 SEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVV 268 (1062)
T ss_pred CCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEE
Confidence 1222211 1111 0 123567887666666667788999998765543322
Q ss_pred eEEeecccCCCCCCeeEEEEecC-CCCEEEEEECCCcEEEEeCCccceeeeccc------CCCCe-----------EEEE
Q 005352 475 EICVHSKKKAPCKRITGFQFLPQ-DSSKVMVSCADSQVRILQGPNVIGKYKGLR------RSGNQ-----------LSAC 536 (701)
Q Consensus 475 ~~~~~~~~~~~~~~i~~l~~~p~-~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~------~~~~v-----------~~l~ 536 (701)
.+. .+.+.-+.+.|+ ....|++...||.+.||--+.....++... ....+ ....
T Consensus 269 pie--------r~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~ 340 (1062)
T KOG1912|consen 269 PIE--------RGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGA 340 (1062)
T ss_pred Eec--------cCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceee
Confidence 211 133445666663 456788999999999997664333333210 01111 1122
Q ss_pred EecC-CCEEEEEeCCCcEEEEeCCCCCCCC
Q 005352 537 FTSD-GKHIVSAGEDSNVYMWNCIGHEEPA 565 (701)
Q Consensus 537 ~s~d-g~~l~sgs~Dg~I~iWd~~~~~~~~ 565 (701)
..|. ...++.--.+|.+.+|.+.++....
T Consensus 341 ~cPs~~sa~avl~s~g~~~~w~l~~~ri~~ 370 (1062)
T KOG1912|consen 341 SCPSTPSALAVLYSSGDSTFWQLSNGRIHL 370 (1062)
T ss_pred cCCCChhhhhhhhhcchhHHHhhhcCCcCc
Confidence 2233 2334444457889999999776533
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.9e-05 Score=77.83 Aligned_cols=184 Identities=14% Similarity=0.127 Sum_probs=119.4
Q ss_pred eEEEEEe-cCCeEEEEECCCcEEEEECCCCeeeeeec------CCCCeEEEEEeeCCCCEEEEEEcC--------CcEEE
Q 005352 357 ILDLSWS-KNNYLLSASIDKTVRLWRVGNDHCLRVFP------HSNYVTCVHFNPVDDNYFISGSID--------GKVRI 421 (701)
Q Consensus 357 I~~l~~s-~~~~l~s~s~dg~I~iWd~~~~~~~~~~~------h~~~V~~l~f~p~~~~~l~sgs~d--------g~v~i 421 (701)
...+++. +++.|+.+...+ +.++|..+++...... .....+.+++.| ++++.++.... |.|..
T Consensus 42 ~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~ 119 (246)
T PF08450_consen 42 PNGMAFDRPDGRLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYR 119 (246)
T ss_dssp EEEEEEECTTSEEEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEE
T ss_pred CceEEEEccCCEEEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEE
Confidence 5667777 667777777655 4555999886554443 235688999999 89877776543 55777
Q ss_pred EeCCCCcEEEEecCCCcEEEEEEeeCCCeEE-EEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCC
Q 005352 422 WAVLSCHVVDWVDIRQIVTAVCYRPDGQGGI-VGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSS 500 (701)
Q Consensus 422 wd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~-~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~ 500 (701)
++.. ++.......-...+.|+|+|+++.|+ +-+..+.|..|++............... .........++++.. +++
T Consensus 120 ~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~g~pDG~~vD~-~G~ 196 (246)
T PF08450_consen 120 IDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFID-FPGGPGYPDGLAVDS-DGN 196 (246)
T ss_dssp EETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE--SSSSCEEEEEEEBT-TS-
T ss_pred ECCC-CeEEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEE-cCCCCcCCCcceEcC-CCC
Confidence 7877 66555555566789999999999776 4567888999998643321111111111 111113478899988 678
Q ss_pred EEEEEECCCcEEEEeCCcc-ceeeecccCCCCeEEEEEe-cCCCEEEEE
Q 005352 501 KVMVSCADSQVRILQGPNV-IGKYKGLRRSGNQLSACFT-SDGKHIVSA 547 (701)
Q Consensus 501 ~l~~~s~dg~I~iwd~~~~-~~~~~~~~~~~~v~~l~~s-~dg~~l~sg 547 (701)
+.++....+.|.+++.... ...+.. ....+++++|. ++.+.|+..
T Consensus 197 l~va~~~~~~I~~~~p~G~~~~~i~~--p~~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 197 LWVADWGGGRIVVFDPDGKLLREIEL--PVPRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp EEEEEETTTEEEEEETTSCEEEEEE---SSSSEEEEEEESTTSSEEEEE
T ss_pred EEEEEcCCCEEEEECCCccEEEEEcC--CCCCEEEEEEECCCCCEEEEE
Confidence 8888888999999998732 222333 34589999994 665555443
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.8e-05 Score=78.76 Aligned_cols=203 Identities=15% Similarity=0.244 Sum_probs=140.6
Q ss_pred CCccCeEEEEEecCC-eEEEEEC---CCcEEEEECCC--Ceeeee--ec-CCCCeEEEEEeeCCCCEEEEEEc-CCcEEE
Q 005352 352 GHSGEILDLSWSKNN-YLLSASI---DKTVRLWRVGN--DHCLRV--FP-HSNYVTCVHFNPVDDNYFISGSI-DGKVRI 421 (701)
Q Consensus 352 ~h~~~I~~l~~s~~~-~l~s~s~---dg~I~iWd~~~--~~~~~~--~~-h~~~V~~l~f~p~~~~~l~sgs~-dg~v~i 421 (701)
.+....+-|+|+|++ +|+++.. +|.|..|.+.. |..... .. ...+...+++++ ++++++++.. -|.|.+
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~-~g~~vf~AnY~~g~v~v 115 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDE-DGRFVFVANYHSGSVSV 115 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECC-CCCEEEEEEccCceEEE
Confidence 355678899999998 7777755 47788777764 443222 22 233448899999 8888887765 578999
Q ss_pred EeCCC-Cc---EEEEecCCCc----------EEEEEEeeCCCeEEEEec-CCcEEEEECCCCeeeeeeeEEeecccCCCC
Q 005352 422 WAVLS-CH---VVDWVDIRQI----------VTAVCYRPDGQGGIVGSM-MGDCRFYNVSDNHLELDAEICVHSKKKAPC 486 (701)
Q Consensus 422 wd~~~-~~---~~~~~~~~~~----------i~~i~~sp~g~~l~~gs~-dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~ 486 (701)
+-++. +. .+....|.+. +....+.|++++|++... ..+|.+|++..+++....+..+ ...
T Consensus 116 ~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v-----~~G 190 (346)
T COG2706 116 YPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEV-----KPG 190 (346)
T ss_pred EEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCcccccccccc-----CCC
Confidence 98865 33 3344555554 888999999999988764 4569999999887654333322 344
Q ss_pred CCeeEEEEecCCCCEEEEEEC-CCcEEEEeCCccceeeec----------ccCCCCeEEEEEecCCCEEEEEeC-CCcEE
Q 005352 487 KRITGFQFLPQDSSKVMVSCA-DSQVRILQGPNVIGKYKG----------LRRSGNQLSACFTSDGKHIVSAGE-DSNVY 554 (701)
Q Consensus 487 ~~i~~l~~~p~~~~~l~~~s~-dg~I~iwd~~~~~~~~~~----------~~~~~~v~~l~~s~dg~~l~sgs~-Dg~I~ 554 (701)
..-..|.|+| ++++..+... +++|-+|........+.. .........+.+++||++|.++.. ...|-
T Consensus 191 ~GPRHi~FHp-n~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~ 269 (346)
T COG2706 191 AGPRHIVFHP-NGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIA 269 (346)
T ss_pred CCcceEEEcC-CCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEE
Confidence 5667899999 6777666665 999999987653322221 123456678889999999988742 33677
Q ss_pred EEeCCCC
Q 005352 555 MWNCIGH 561 (701)
Q Consensus 555 iWd~~~~ 561 (701)
++.+...
T Consensus 270 ~f~V~~~ 276 (346)
T COG2706 270 VFSVDPD 276 (346)
T ss_pred EEEEcCC
Confidence 7777654
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.2e-05 Score=83.20 Aligned_cols=231 Identities=8% Similarity=0.027 Sum_probs=133.3
Q ss_pred ccceEEEEEccCccchhhhcccCc-eeccCCCcEEEEEEccCCCEEEEEeC--CCcEEEEEeecCeeeeeecCCCCCCce
Q 005352 221 KVQRVKVYHCKKRSKELSALYKGQ-EIQAHDGSILTMKFSPDGQYLASAGD--DGVVRLWQVVEDERLTEVDIPEIDPSC 297 (701)
Q Consensus 221 ~d~~v~vw~~~~~~~~~~~~~~~~-~l~~H~~~I~~l~fspdg~~Lasgs~--Dg~I~iWd~~~~~~~~~~~~~~~~~~~ 297 (701)
.+..|.|||.........-..... +.+ .......++++|||++|+.... +..|.+.|+.+++.+.++..+. |
T Consensus 75 ~~d~V~v~D~~t~~~~~~i~~p~~p~~~-~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~----~ 149 (352)
T TIGR02658 75 RTDYVEVIDPQTHLPIADIELPEGPRFL-VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD----C 149 (352)
T ss_pred CCCEEEEEECccCcEEeEEccCCCchhh-ccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC----C
Confidence 578999999764332110000000 000 1223447899999999987763 6899999999999999887643 2
Q ss_pred eEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEec-CC-eEEEEECCC
Q 005352 298 IYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK-NN-YLLSASIDK 375 (701)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~-~~-~l~s~s~dg 375 (701)
.............++.+..... ..+..... ...-...+|+....++ ...+ .+.+ ++ +++.... |
T Consensus 150 ~~vy~t~e~~~~~~~~Dg~~~~--v~~d~~g~--~~~~~~~vf~~~~~~v-----~~rP----~~~~~dg~~~~vs~e-G 215 (352)
T TIGR02658 150 YHIFPTANDTFFMHCRDGSLAK--VGYGTKGN--PKIKPTEVFHPEDEYL-----INHP----AYSNKSGRLVWPTYT-G 215 (352)
T ss_pred cEEEEecCCccEEEeecCceEE--EEecCCCc--eEEeeeeeecCCcccc-----ccCC----ceEcCCCcEEEEecC-C
Confidence 2222221111111111111111 00110000 0000000110000000 0111 3455 66 5555444 9
Q ss_pred cEEEEECCCC-----eeeeeec--------CCCCeEEEEEeeCCCCEEEEEE----------cCCcEEEEeCCCCcEEEE
Q 005352 376 TVRLWRVGND-----HCLRVFP--------HSNYVTCVHFNPVDDNYFISGS----------IDGKVRIWAVLSCHVVDW 432 (701)
Q Consensus 376 ~I~iWd~~~~-----~~~~~~~--------h~~~V~~l~f~p~~~~~l~sgs----------~dg~v~iwd~~~~~~~~~ 432 (701)
+|.+-|+... +.+..+. ..+.+.-++++| +++.++... ..+.|.++|..+++.+..
T Consensus 216 ~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~-dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~ 294 (352)
T TIGR02658 216 KIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHR-ARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRK 294 (352)
T ss_pred eEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcC-CCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEE
Confidence 9999996443 3333332 334455699999 777777632 124799999999999988
Q ss_pred ecCCCcEEEEEEeeCCC-eEEEEe-cCCcEEEEECCCCeee
Q 005352 433 VDIRQIVTAVCYRPDGQ-GGIVGS-MMGDCRFYNVSDNHLE 471 (701)
Q Consensus 433 ~~~~~~i~~i~~sp~g~-~l~~gs-~dg~v~i~d~~~~~~~ 471 (701)
+.....+..++++||++ .|++.. .++.|.++|..+.+..
T Consensus 295 i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i 335 (352)
T TIGR02658 295 IELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKEL 335 (352)
T ss_pred EeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEE
Confidence 88888999999999999 888776 5788999999887654
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.1e-05 Score=96.44 Aligned_cols=259 Identities=14% Similarity=0.103 Sum_probs=158.4
Q ss_pred EEEEEecC-C-eEEEEECCCcEEEEECCCCeeeeeecC---------------CCCeEEEEEeeCCCCEEEEE-EcCCcE
Q 005352 358 LDLSWSKN-N-YLLSASIDKTVRLWRVGNDHCLRVFPH---------------SNYVTCVHFNPVDDNYFISG-SIDGKV 419 (701)
Q Consensus 358 ~~l~~s~~-~-~l~s~s~dg~I~iWd~~~~~~~~~~~h---------------~~~V~~l~f~p~~~~~l~sg-s~dg~v 419 (701)
..+++++. + .+++-+.++.|++||.... .+..+.. -.....+++++ +++.|+.+ ..++.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~-~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~-~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGN-FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA-KKNLLYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCC-EEEEEccCCCcCCCCCchhccccCCCcEEEEeC-CCCEEEEEeCCCceE
Confidence 46788764 4 6667777889999998644 3433321 12368899998 67755554 445779
Q ss_pred EEEeCCCCcEEEEecC-----------------CCcEEEEEEee-CCCeEEEEecCCcEEEEECCCCeeeeeeeE----E
Q 005352 420 RIWAVLSCHVVDWVDI-----------------RQIVTAVCYRP-DGQGGIVGSMMGDCRFYNVSDNHLELDAEI----C 477 (701)
Q Consensus 420 ~iwd~~~~~~~~~~~~-----------------~~~i~~i~~sp-~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~----~ 477 (701)
+++|+.++.+..+.+. -.....++++| ++..+++.+.++.|++||..++........ .
T Consensus 649 r~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~ 728 (1057)
T PLN02919 649 REIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERN 728 (1057)
T ss_pred EEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCcccc
Confidence 9999988765443221 12346799999 555666667789999999987654311000 0
Q ss_pred eec--ccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeec------------c---------cCCCCeEE
Q 005352 478 VHS--KKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKG------------L---------RRSGNQLS 534 (701)
Q Consensus 478 ~~~--~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~------------~---------~~~~~v~~ 534 (701)
... ..........+++++|++..++++-+.++.|++||..+....... . ........
T Consensus 729 ~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~G 808 (1057)
T PLN02919 729 LNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLG 808 (1057)
T ss_pred CCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCce
Confidence 000 001122456789999954446667777899999998643221100 0 01123468
Q ss_pred EEEecCCCEEEEEeCCCcEEEEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccc
Q 005352 535 ACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLA 614 (701)
Q Consensus 535 l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 614 (701)
++++++|+++++-+.++.|++||..++.... + .-.|.. +.. .+. ........+..++
T Consensus 809 vavd~dG~LYVADs~N~rIrviD~~tg~v~t---------i-----------aG~G~~-G~~-dG~-~~~a~l~~P~GIa 865 (1057)
T PLN02919 809 VLCAKDGQIYVADSYNHKIKKLDPATKRVTT---------L-----------AGTGKA-GFK-DGK-ALKAQLSEPAGLA 865 (1057)
T ss_pred eeEeCCCcEEEEECCCCEEEEEECCCCeEEE---------E-----------eccCCc-CCC-CCc-ccccccCCceEEE
Confidence 9999999988998999999999988765210 0 000000 000 000 0001112355667
Q ss_pred cCCCccccCccccccCCCCcccCCCCccCCC
Q 005352 615 FAPARFSLGQEYVFESFPKGCATWPEEKLPA 645 (701)
Q Consensus 615 ~sp~~~~~~~~~~~~s~d~~~~~W~~~~~~~ 645 (701)
++|+ ++.+++.+.+..|++|+.++...
T Consensus 866 vd~d----G~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 866 LGEN----GRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred EeCC----CCEEEEECCCCEEEEEECCCCcc
Confidence 7776 66788888999999999876643
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.3e-05 Score=83.94 Aligned_cols=180 Identities=13% Similarity=0.082 Sum_probs=115.2
Q ss_pred CCeEEEEECCCcEEEEECCCCeeeeeecCCCCeEE------EEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCc
Q 005352 365 NNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTC------VHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQI 438 (701)
Q Consensus 365 ~~~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~------l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~ 438 (701)
++.++.++.++.|..||..+++.+..+........ ... .+..++.+..++.+..+|..+++.+-......+
T Consensus 145 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~---~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~ 221 (377)
T TIGR03300 145 NGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI---ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALP 221 (377)
T ss_pred CCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE---ECCEEEEECCCCEEEEEEccCCCEeeeeccccC
Confidence 34677777899999999999998887764332211 112 224677888889999999999876532211100
Q ss_pred --------EEEEEEee--CCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECC
Q 005352 439 --------VTAVCYRP--DGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD 508 (701)
Q Consensus 439 --------i~~i~~sp--~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~d 508 (701)
...+.-+| .+..+++++.+|.+..||..+++....... ........ .+..+++++.+
T Consensus 222 ~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~----------~~~~~p~~---~~~~vyv~~~~ 288 (377)
T TIGR03300 222 KGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDA----------SSYQGPAV---DDNRLYVTDAD 288 (377)
T ss_pred CCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeecc----------CCccCceE---eCCEEEEECCC
Confidence 00011111 356788888999999999998876543221 01111222 35678888899
Q ss_pred CcEEEEeCCccceeeeccc-CCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 509 SQVRILQGPNVIGKYKGLR-RSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 509 g~I~iwd~~~~~~~~~~~~-~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
|.|+.+|..+......... ......+... .+.+|++++.+|.|+++|..+++
T Consensus 289 G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~ 341 (377)
T TIGR03300 289 GVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGS 341 (377)
T ss_pred CeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCC
Confidence 9999999876655443311 1111222222 46789999999999999988887
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.7e-07 Score=87.97 Aligned_cols=242 Identities=17% Similarity=0.249 Sum_probs=141.1
Q ss_pred cceeeecC--ccccccccccceEEEEEccCccchhhhcccCceeccCCC------------cEEEEEEccCCC--EEEEE
Q 005352 205 EGERVRLN--EEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDG------------SILTMKFSPDGQ--YLASA 268 (701)
Q Consensus 205 ~~~~~~~~--~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~------------~I~~l~fspdg~--~Lasg 268 (701)
.+.++.++ +.++++|...|+|.+|.-.+...--.. -..++|+|.. .|..+.|..++. .++..
T Consensus 28 ~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceyk--f~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 28 KITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYK--FFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred eeeEEEeccccceEeecCCCceEEEeecccccccchh--hhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 34555555 456777777799999975443210011 1124566653 588899977643 46666
Q ss_pred eCCCcEEEEEeecCee--eeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCC
Q 005352 269 GDDGVVRLWQVVEDER--LTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKP 346 (701)
Q Consensus 269 s~Dg~I~iWd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (701)
+.|.+|++|.+..... +.+-.+.+. ..+...+ .+. ....+...+-+....++.. +|
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~----~~~~~~g--~~~-------s~~~l~lprls~hd~iiaa---------~p 163 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDS----FHSPMGG--PLT-------STKELLLPRLSEHDEIIAA---------KP 163 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccc----cccccCC--CcC-------CHHHhhcccccccceEEEe---------cc
Confidence 7899999999876421 111111000 0000000 000 0000000011111111111 33
Q ss_pred eEEE-cCCccCeEEEEEecCCeEEEEECCCcEEEEECCCCe-eeee--e-cC-----CCCeEEEEEeeCCCCEEEEEEcC
Q 005352 347 LHEF-HGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDH-CLRV--F-PH-----SNYVTCVHFNPVDDNYFISGSID 416 (701)
Q Consensus 347 ~~~~-~~h~~~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~-~~~~--~-~h-----~~~V~~l~f~p~~~~~l~sgs~d 416 (701)
.+.+ ..|.-.|.+|.+..+...+.++.|=.|.+|++.--. +... + +| ..-|++..|+|...+.|.-.+..
T Consensus 164 ~rvyaNaH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSk 243 (460)
T COG5170 164 CRVYANAHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSK 243 (460)
T ss_pred ceeccccceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCC
Confidence 3333 578889999999988855555667889999986432 1111 1 22 24588999999777888888889
Q ss_pred CcEEEEeCCCCcEEE-----------------EecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeee
Q 005352 417 GKVRIWAVLSCHVVD-----------------WVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLE 471 (701)
Q Consensus 417 g~v~iwd~~~~~~~~-----------------~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~ 471 (701)
|.|++-|++...+.. +...-..|..+.|+++|+++++-.. -+|++||++..+..
T Consensus 244 G~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~p 314 (460)
T COG5170 244 GEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNP 314 (460)
T ss_pred CcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCC
Confidence 999999998533210 0112245888999999999988765 68999999876543
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.9e-07 Score=85.92 Aligned_cols=93 Identities=15% Similarity=0.152 Sum_probs=72.4
Q ss_pred CcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEE--EEecCCCcEEEEEEee-CCCe
Q 005352 375 KTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV--DWVDIRQIVTAVCYRP-DGQG 450 (701)
Q Consensus 375 g~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~--~~~~~~~~i~~i~~sp-~g~~ 450 (701)
+..++|+++..+.+..-. .-..|++++-+|...+++++|+.||.+.+||.+..... .+..|+.+++.+-|+| ++..
T Consensus 159 d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~ 238 (319)
T KOG4714|consen 159 DNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEH 238 (319)
T ss_pred cceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchh
Confidence 345667665443332222 33459999999977788899999999999999987543 3456889999999999 6789
Q ss_pred EEEEecCCcEEEEECCC
Q 005352 451 GIVGSMMGDCRFYNVSD 467 (701)
Q Consensus 451 l~~gs~dg~v~i~d~~~ 467 (701)
|++++.||.+..||..+
T Consensus 239 Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 239 LFTCSEDGSLWHWDAST 255 (319)
T ss_pred eeEecCCCcEEEEcCCC
Confidence 99999999999999876
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.61 E-value=4.6e-06 Score=89.77 Aligned_cols=243 Identities=11% Similarity=0.085 Sum_probs=160.5
Q ss_pred EEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccE
Q 005352 253 ILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESAC 332 (701)
Q Consensus 253 I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (701)
-.++.|+|.| ++|-|+. ..|.+-|..+-+.+
T Consensus 18 ~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~i----------------------------------------------- 48 (1062)
T KOG1912|consen 18 RNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLI----------------------------------------------- 48 (1062)
T ss_pred ccccccCccc-eEEEecC-ceEEEEehhhhhhh-----------------------------------------------
Confidence 5678999988 6676665 57888887765543
Q ss_pred EEcCCccccccCCCeEEEcCCccCeEEEEEecC-----------C--eEEEEECCCcEEEEECCCCeeeeeec-CCCCeE
Q 005352 333 VVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN-----------N--YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVT 398 (701)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~-----------~--~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~ 398 (701)
+.+.-|...|+.+.|.|- . .|+++...|.|.+||...+..+..+. +.+++.
T Consensus 49 ---------------qsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~q 113 (1062)
T KOG1912|consen 49 ---------------QSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQ 113 (1062)
T ss_pred ---------------hccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchh
Confidence 344456677777777651 1 57777888999999999988887777 678899
Q ss_pred EEEEeeCC--C-CEEEEEEcCCcEEEEeCCCCcEEEEec-CCCcEEEEEEee-CCCeEEEEecCCcEEEEECCCCee---
Q 005352 399 CVHFNPVD--D-NYFISGSIDGKVRIWAVLSCHVVDWVD-IRQIVTAVCYRP-DGQGGIVGSMMGDCRFYNVSDNHL--- 470 (701)
Q Consensus 399 ~l~f~p~~--~-~~l~sgs~dg~v~iwd~~~~~~~~~~~-~~~~i~~i~~sp-~g~~l~~gs~dg~v~i~d~~~~~~--- 470 (701)
.++|-|.. . .+|++-....+|.+|+..+|+..-... ......++.+.| |.+.+.+-+..|.+.+-+.-....
T Consensus 114 dl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~ 193 (1062)
T KOG1912|consen 114 DLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDV 193 (1062)
T ss_pred heeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCC
Confidence 99998732 2 467777778899999999998774433 445566789998 667777777778877776542211
Q ss_pred -eeeeeEEeeccc-----------------CCCCC---CeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCC
Q 005352 471 -ELDAEICVHSKK-----------------KAPCK---RITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRS 529 (701)
Q Consensus 471 -~~~~~~~~~~~~-----------------~~~~~---~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~ 529 (701)
..+.++...... ..... ....++|+| .-+.++.......+.++|+.-........-..
T Consensus 194 pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p-~~rn~lfi~~prellv~dle~~~~l~vvpier 272 (1062)
T KOG1912|consen 194 PGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSP-HWRNILFITFPRELLVFDLEYECCLAVVPIER 272 (1062)
T ss_pred CceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcCh-hhhceEEEEeccceEEEcchhhceeEEEEecc
Confidence 111111111000 00000 112356788 44555666677889999987443333332244
Q ss_pred CCeEEEEEecCC--CEEEEEeCCCcEEEEeCCC
Q 005352 530 GNQLSACFTSDG--KHIVSAGEDSNVYMWNCIG 560 (701)
Q Consensus 530 ~~v~~l~~s~dg--~~l~sgs~Dg~I~iWd~~~ 560 (701)
+.+.-+.+-|++ ..|++...||.+.||--+.
T Consensus 273 ~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 273 GGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred CCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 445556666654 6899999999999997654
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.61 E-value=0.00012 Score=86.12 Aligned_cols=297 Identities=18% Similarity=0.232 Sum_probs=174.5
Q ss_pred CCCcEEEEEEccCCCEEEEEeC---C---CcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeE
Q 005352 249 HDGSILTMKFSPDGQYLASAGD---D---GVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (701)
Q Consensus 249 H~~~I~~l~fspdg~~Lasgs~---D---g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (701)
+...-..|+|-.||.|+|+.+. . ..||||+-+ |.....-.... ..-..+.|.+.+..+..
T Consensus 208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~-------------gLe~~l~WrPsG~lIA~ 273 (928)
T PF04762_consen 208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVD-------------GLEGALSWRPSGNLIAS 273 (928)
T ss_pred cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCC-------------CccCCccCCCCCCEEEE
Confidence 4445678999999999998765 2 578999864 43222111100 11224455555555555
Q ss_pred EeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeee--e--eecCCCCe
Q 005352 323 SLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCL--R--VFPHSNYV 397 (701)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~--~--~~~h~~~V 397 (701)
..+......++.|...-.+-.+ ....+......|..|.|++++ .|+..-.|. |.+|-..+-... + .+.....+
T Consensus 274 ~q~~~~~~~VvFfErNGLrhge-F~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~ 351 (928)
T PF04762_consen 274 SQRLPDRHDVVFFERNGLRHGE-FTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESV 351 (928)
T ss_pred EEEcCCCcEEEEEecCCcEeee-EecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCC
Confidence 5544444444444443322211 111112345679999999999 666655544 999998776422 2 22344556
Q ss_pred EEEEEeeCCCCEEEEEEcCCcEEEEeC----CC----------------CcEE----------------EEecCCCcEEE
Q 005352 398 TCVHFNPVDDNYFISGSIDGKVRIWAV----LS----------------CHVV----------------DWVDIRQIVTA 441 (701)
Q Consensus 398 ~~l~f~p~~~~~l~sgs~dg~v~iwd~----~~----------------~~~~----------------~~~~~~~~i~~ 441 (701)
..+.|+|.+...|...+.+|.+..++. .. |..+ ..+....+|..
T Consensus 352 ~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~ 431 (928)
T PF04762_consen 352 NFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVND 431 (928)
T ss_pred CceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEE
Confidence 669999977888888887777766543 11 1111 12234567999
Q ss_pred EEEeeCCCeEEEEecCCcEEEEECCCCeeee------eeeEEe----ecccCCCCCCeeEEEEecCCCCEEEEEECC---
Q 005352 442 VCYRPDGQGGIVGSMMGDCRFYNVSDNHLEL------DAEICV----HSKKKAPCKRITGFQFLPQDSSKVMVSCAD--- 508 (701)
Q Consensus 442 i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~------~~~~~~----~~~~~~~~~~i~~l~~~p~~~~~l~~~s~d--- 508 (701)
++|++++..+++-..||.+.+|......... ...+.. ..........+..+.|.. +...++....+
T Consensus 432 vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 510 (928)
T PF04762_consen 432 VAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLN-DDTLLVLSDSDSNQ 510 (928)
T ss_pred EEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeC-CCEEEEEEecCccc
Confidence 9999999889999999999999965443221 001111 001122345678888887 34444444443
Q ss_pred CcEEEEeCCccc---eeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 509 SQVRILQGPNVI---GKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 509 g~I~iwd~~~~~---~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
..+.+++..... ...........+..+...++...++.-..+|.++..+.....
T Consensus 511 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~~~ 567 (928)
T PF04762_consen 511 SKIVLVDIDDSENSASVESSTEVDGVVLIISSSPDSGSLYIQTNDGKVFQLSSDGEL 567 (928)
T ss_pred ceEEEEEeccCCCceeEEEEeccCceEEEEeeCCCCcEEEEEECCCEEEEeecCCCc
Confidence 677778764322 122222234555555555555546666779999977766554
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.9e-05 Score=84.94 Aligned_cols=192 Identities=9% Similarity=0.064 Sum_probs=123.3
Q ss_pred CeEEEEEecCC-e-EEEEEC---CCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEE-EcC--CcEEEEeCCCC
Q 005352 356 EILDLSWSKNN-Y-LLSASI---DKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISG-SID--GKVRIWAVLSC 427 (701)
Q Consensus 356 ~I~~l~~s~~~-~-l~s~s~---dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sg-s~d--g~v~iwd~~~~ 427 (701)
.+....|+|++ . ++..+. +..|.++|+.+++........+......|+| +++.++.. +.+ ..|.++|+.++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SP-DG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSK-DGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECC-CCCEEEEEEccCCCcEEEEEECCCC
Confidence 67789999998 4 554443 3569999999988776666666677888999 88766543 333 46888898888
Q ss_pred cEEEEecCCCcEEEEEEeeCCCeEEEEec-CC--cEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEE
Q 005352 428 HVVDWVDIRQIVTAVCYRPDGQGGIVGSM-MG--DCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMV 504 (701)
Q Consensus 428 ~~~~~~~~~~~i~~i~~sp~g~~l~~gs~-dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~ 504 (701)
+...+...........|+|||+.|+..+. .| .|.++|+.++..... .. .. . ....|+| +++.++.
T Consensus 268 ~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rl---t~----~g--~--~~~~~SP-DG~~Ia~ 335 (419)
T PRK04043 268 TLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQV---VF----HG--K--NNSSVST-YKNYIVY 335 (419)
T ss_pred cEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeC---cc----CC--C--cCceECC-CCCEEEE
Confidence 76666555544456689999998877664 23 577778876654211 00 01 1 1248999 5666655
Q ss_pred EECC---------CcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCC---CcEEEEeCCCCC
Q 005352 505 SCAD---------SQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGED---SNVYMWNCIGHE 562 (701)
Q Consensus 505 ~s~d---------g~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~D---g~I~iWd~~~~~ 562 (701)
.+.. ..|.+.|+.......-. .........|+|||++|+..+.+ ..+.+.+++...
T Consensus 336 ~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT--~~~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~ 403 (419)
T PRK04043 336 SSRETNNEFGKNTFNLYLISTNSDYIRRLT--ANGVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNK 403 (419)
T ss_pred EEcCCCcccCCCCcEEEEEECCCCCeEECC--CCCCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCe
Confidence 5543 36788887643322111 11233358899999988766533 236677776543
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.58 E-value=3.6e-05 Score=76.57 Aligned_cols=192 Identities=16% Similarity=0.134 Sum_probs=123.4
Q ss_pred ecCCeEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEe-cCC----C
Q 005352 363 SKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV-DIR----Q 437 (701)
Q Consensus 363 s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~-~~~----~ 437 (701)
..++++++++.++.|..||..+++.+..+.....+...... .+..++.+..++.|+.+|..+++.+-.. ... .
T Consensus 34 ~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~--~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~ 111 (238)
T PF13360_consen 34 PDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVV--DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG 111 (238)
T ss_dssp EETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEE--ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS
T ss_pred EeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeee--cccccccccceeeeEecccCCcceeeeeccccccccc
Confidence 34568888899999999999999999888744433222222 4566777778899999999999887542 211 1
Q ss_pred cEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCC---CCCeeEEEEecCCCCEEEEEECCCcEEEE
Q 005352 438 IVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAP---CKRITGFQFLPQDSSKVMVSCADSQVRIL 514 (701)
Q Consensus 438 ~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~---~~~i~~l~~~p~~~~~l~~~s~dg~I~iw 514 (701)
..........+..++++..++.|..+|+.+++........... ...+ ...+..-.... ++ .++++..++.+.-+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~~ 188 (238)
T PF13360_consen 112 VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPR-GSSPISSFSDINGSPVIS-DG-RVYVSSGDGRVVAV 188 (238)
T ss_dssp TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT--SS--EEEETTEEEEEECC-TT-EEEEECCTSSEEEE
T ss_pred cccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCC-CCcceeeecccccceEEE-CC-EEEEEcCCCeEEEE
Confidence 2223333444888999998999999999999876544331100 0000 01122222222 23 77777777764444
Q ss_pred eCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 515 QGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 515 d~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
|..+........ ...+.. ....++..|+.++.++.|+.||+.+++
T Consensus 189 d~~tg~~~w~~~--~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 189 DLATGEKLWSKP--ISGIYS-LPSVDGGTLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp ETTTTEEEEEEC--SS-ECE-CEECCCTEEEEEETTTEEEEEETTTTE
T ss_pred ECCCCCEEEEec--CCCccC-CceeeCCEEEEEeCCCEEEEEECCCCC
Confidence 988776555332 222222 245678888888899999999999986
|
... |
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.7e-07 Score=99.86 Aligned_cols=238 Identities=16% Similarity=0.241 Sum_probs=160.4
Q ss_pred ccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccC-CCEEEEEeCCCcEEEEEeecCeeeeeecCCCC
Q 005352 215 DAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPD-GQYLASAGDDGVVRLWQVVEDERLTEVDIPEI 293 (701)
Q Consensus 215 ~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~ 293 (701)
+-++......-.||.+.+.......+ .+.+|..+|+.+.|.|. ...||+++.|-.+..||+.+..
T Consensus 83 ~wiVsts~qkaiiwnlA~ss~~aIef----~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~---------- 148 (1081)
T KOG0309|consen 83 YWIVSTSNQKAIIWNLAKSSSNAIEF----VLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH---------- 148 (1081)
T ss_pred eeEEecCcchhhhhhhhcCCccceEE----EEecCccceeccccCCCCCcceeeccccccceeeeccCCC----------
Confidence 33445556667788775544333222 36789999999999986 4579999999999999997753
Q ss_pred CCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEE
Q 005352 294 DPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSAS 372 (701)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s 372 (701)
.++..+..-...-..++|+-.. .+++.+
T Consensus 149 ---------------------------------------------------~p~ys~~~w~s~asqVkwnyk~p~vlass 177 (1081)
T KOG0309|consen 149 ---------------------------------------------------RPFYSTSSWRSAASQVKWNYKDPNVLASS 177 (1081)
T ss_pred ---------------------------------------------------cceeeeecccccCceeeecccCcchhhhc
Confidence 2333344444556778898766 778888
Q ss_pred CCCcEEEEECCCCe-eeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCc--EEEEecCCCcEEEEEEeeCC
Q 005352 373 IDKTVRLWRVGNDH-CLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH--VVDWVDIRQIVTAVCYRPDG 448 (701)
Q Consensus 373 ~dg~I~iWd~~~~~-~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~--~~~~~~~~~~i~~i~~sp~g 448 (701)
..+.|.+||++.+. ++..++ |...|+.++|+......+.+.+.||+|+.||..+.. .........+|..-+|.|-|
T Consensus 178 hg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg 257 (1081)
T KOG0309|consen 178 HGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFG 257 (1081)
T ss_pred cCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccC
Confidence 88999999998764 444454 778899999987667789999999999999987543 33555667788888899977
Q ss_pred CeEEEEec--CCcEEEEECCCCeeeeeee--EEeecccCCCCCCeeEEEEecC---------CCCEEEEEECCCcEEEEe
Q 005352 449 QGGIVGSM--MGDCRFYNVSDNHLELDAE--ICVHSKKKAPCKRITGFQFLPQ---------DSSKVMVSCADSQVRILQ 515 (701)
Q Consensus 449 ~~l~~gs~--dg~v~i~d~~~~~~~~~~~--~~~~~~~~~~~~~i~~l~~~p~---------~~~~l~~~s~dg~I~iwd 515 (701)
...++--. +..+.+++-++........ ........+|...|..+.|-.. ..-.|++-+.|..+++|-
T Consensus 258 ~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWp 337 (1081)
T KOG0309|consen 258 EGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWP 337 (1081)
T ss_pred ceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeee
Confidence 65544322 2245555554432221100 0111123455555655555331 124689999999999998
Q ss_pred CC
Q 005352 516 GP 517 (701)
Q Consensus 516 ~~ 517 (701)
+.
T Consensus 338 I~ 339 (1081)
T KOG0309|consen 338 ID 339 (1081)
T ss_pred cc
Confidence 65
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.54 E-value=8.2e-07 Score=88.93 Aligned_cols=100 Identities=17% Similarity=0.304 Sum_probs=85.2
Q ss_pred EEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEE--EecCCCcEEEEEEeeC
Q 005352 370 SASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD--WVDIRQIVTAVCYRPD 447 (701)
Q Consensus 370 s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~--~~~~~~~i~~i~~sp~ 447 (701)
.++....+.+|....+.+...+.|-..++.++|+| |+.+++++..|..|+|-.......+. ..+|..-|..++..++
T Consensus 127 kagD~~~~di~s~~~~~~~~~lGhvSml~dVavS~-D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~ 205 (390)
T KOG3914|consen 127 KAGDVYSFDILSADSGRCEPILGHVSMLLDVAVSP-DDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN 205 (390)
T ss_pred ecCCceeeeeecccccCcchhhhhhhhhheeeecC-CCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC
Confidence 44556677788777788888889999999999999 99999999999999998887766663 4568899999998865
Q ss_pred CCeEEEEecCCcEEEEECCCCeee
Q 005352 448 GQGGIVGSMMGDCRFYNVSDNHLE 471 (701)
Q Consensus 448 g~~l~~gs~dg~v~i~d~~~~~~~ 471 (701)
..|++|+.|+++++||+.+++..
T Consensus 206 -~~LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 206 -YLLLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred -ceeeecCCCCcEEEEecccCCcc
Confidence 46899999999999999998765
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.7e-05 Score=83.84 Aligned_cols=149 Identities=13% Similarity=0.013 Sum_probs=91.1
Q ss_pred cCeEEEEEecCC-eE-EEEECC--CcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEc-CC--cEEEEeCCCC
Q 005352 355 GEILDLSWSKNN-YL-LSASID--KTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSI-DG--KVRIWAVLSC 427 (701)
Q Consensus 355 ~~I~~l~~s~~~-~l-~s~s~d--g~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~-dg--~v~iwd~~~~ 427 (701)
+......|+|+| .+ ++.+.+ ..|.++|+.+++......+........|+| +++.|+..+. .+ .|.+.|+.++
T Consensus 233 g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SP-DG~~I~F~Sdr~g~~~Iy~~dl~~g 311 (419)
T PRK04043 233 GMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVE-DDKRIVFVSDRLGYPNIFMKKLNSG 311 (419)
T ss_pred CcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECC-CCCEEEEEECCCCCceEEEEECCCC
Confidence 345566799999 44 444444 468888988887555444444345568999 8887776653 23 5888888888
Q ss_pred cEEEEecCCCcEEEEEEeeCCCeEEEEecC---------CcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCC
Q 005352 428 HVVDWVDIRQIVTAVCYRPDGQGGIVGSMM---------GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQD 498 (701)
Q Consensus 428 ~~~~~~~~~~~i~~i~~sp~g~~l~~gs~d---------g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~ 498 (701)
+.......... ...|+|+|+.|+..... ..|.++|+.++....- .. . .......|+| +
T Consensus 312 ~~~rlt~~g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~L-----T~--~---~~~~~p~~SP-D 378 (419)
T PRK04043 312 SVEQVVFHGKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRL-----TA--N---GVNQFPRFSS-D 378 (419)
T ss_pred CeEeCccCCCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEEC-----CC--C---CCcCCeEECC-C
Confidence 76544332222 24899999988877653 2678888877653211 11 0 1223478999 5
Q ss_pred CCEEEEEEC-CC--cEEEEeCC
Q 005352 499 SSKVMVSCA-DS--QVRILQGP 517 (701)
Q Consensus 499 ~~~l~~~s~-dg--~I~iwd~~ 517 (701)
+..++.... .+ .+.++++.
T Consensus 379 G~~I~f~~~~~~~~~L~~~~l~ 400 (419)
T PRK04043 379 GGSIMFIKYLGNQSALGIIRLN 400 (419)
T ss_pred CCEEEEEEccCCcEEEEEEecC
Confidence 665555443 22 24455554
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.47 E-value=9.1e-05 Score=75.81 Aligned_cols=169 Identities=17% Similarity=0.168 Sum_probs=129.3
Q ss_pred eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCC-cEEEEeCCCCcEEEEecCCCcEEEEEEe
Q 005352 367 YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDG-KVRIWAVLSCHVVDWVDIRQIVTAVCYR 445 (701)
Q Consensus 367 ~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg-~v~iwd~~~~~~~~~~~~~~~i~~i~~s 445 (701)
+++..|. |...|.+...+- ...+.+.+.|.-..+.. +++-++.|..|| .+-|||..++++......-+.|.++..+
T Consensus 334 ~ia~VSR-GkaFi~~~~~~~-~iqv~~~~~VrY~r~~~-~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs 410 (668)
T COG4946 334 YIALVSR-GKAFIMRPWDGY-SIQVGKKGGVRYRRIQV-DPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVS 410 (668)
T ss_pred EEEEEec-CcEEEECCCCCe-eEEcCCCCceEEEEEcc-CCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEc
Confidence 6666665 456666554443 33456777788888887 777899999999 8999999999988888888999999999
Q ss_pred eCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECC----CcEEEEeCCccce
Q 005352 446 PDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD----SQVRILQGPNVIG 521 (701)
Q Consensus 446 p~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~d----g~I~iwd~~~~~~ 521 (701)
|+|+.++++.....+.++|+.++..... .++...-|+.+.|+| ++.+++-+--+ ..|+++|+...+.
T Consensus 411 ~dGK~~vvaNdr~el~vididngnv~~i--------dkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~~Ki 481 (668)
T COG4946 411 PDGKKVVVANDRFELWVIDIDNGNVRLI--------DKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDGGKI 481 (668)
T ss_pred CCCcEEEEEcCceEEEEEEecCCCeeEe--------cccccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCCCeE
Confidence 9999999999999999999999876432 344557799999999 78888876654 4689999875332
Q ss_pred eeecccCCCCeEEEEEecCCCEEEEEe
Q 005352 522 KYKGLRRSGNQLSACFTSDGKHIVSAG 548 (701)
Q Consensus 522 ~~~~~~~~~~v~~l~~s~dg~~l~sgs 548 (701)
+......+.=.+-+|.|++++|.--+
T Consensus 482 -y~vTT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 482 -YDVTTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred -EEecCCcccccCcccCCCCcEEEEEe
Confidence 22222344446678999999886544
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.8e-07 Score=62.14 Aligned_cols=35 Identities=40% Similarity=0.900 Sum_probs=33.3
Q ss_pred ceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEE
Q 005352 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQ 278 (701)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd 278 (701)
+.+++|.+.|++|+|+|++.+|++|+.|+.|++||
T Consensus 5 ~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 5 RTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 46889999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.7e-06 Score=87.54 Aligned_cols=204 Identities=14% Similarity=0.133 Sum_probs=148.4
Q ss_pred CCccCeEEEEEecCCeEEEEECCCcEEEEECCCCe---eeeeec-CCCCeEEEEEeeCCCCEEEEEEc-CCcEEEEeCCC
Q 005352 352 GHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDH---CLRVFP-HSNYVTCVHFNPVDDNYFISGSI-DGKVRIWAVLS 426 (701)
Q Consensus 352 ~h~~~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~---~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~-dg~v~iwd~~~ 426 (701)
-|.+.|+.+......++++++.||.++.|.-..-. .+..+. |...|.+++.+- ++.++.+.+. |..++++|+.+
T Consensus 7 mhrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~-dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 7 MHRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSY-DGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred cccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccc-cceeEeeccCcccceeEEEeec
Confidence 38888998887777799999999999999754322 222222 778888888887 8999999777 99999999987
Q ss_pred CcEEEEecCCCcEEEEEEeeC-C---CeEEE-EecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCE
Q 005352 427 CHVVDWVDIRQIVTAVCYRPD-G---QGGIV-GSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSK 501 (701)
Q Consensus 427 ~~~~~~~~~~~~i~~i~~sp~-g---~~l~~-gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~ 501 (701)
-..+..+........++|... | ..+++ .-.+|.+.++|-....+.. ....+.|..+|..+.++| -+..
T Consensus 86 ~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~------~~fkklH~sPV~~i~y~q-a~Ds 158 (558)
T KOG0882|consen 86 FDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQD------GYFKKLHFSPVKKIRYNQ-AGDS 158 (558)
T ss_pred cchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCcc------ceecccccCceEEEEeec-cccc
Confidence 665544444433334444322 2 13333 3457889999987655332 223566778999999999 6788
Q ss_pred EEEEECCCcEEEEeCCccce---------------eeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCC
Q 005352 502 VMVSCADSQVRILQGPNVIG---------------KYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEE 563 (701)
Q Consensus 502 l~~~s~dg~I~iwd~~~~~~---------------~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~ 563 (701)
+++....|.|..|......+ .+..........++.|+|+|..+.+-+.|..|+++++.+++.
T Consensus 159 ~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGkl 235 (558)
T KOG0882|consen 159 AVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKL 235 (558)
T ss_pred eeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchh
Confidence 88888899999998763111 111122456788999999999999999999999999999885
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.6e-05 Score=74.21 Aligned_cols=192 Identities=14% Similarity=-0.007 Sum_probs=127.9
Q ss_pred CCeEEEEECCCcEEEEECCCCeeeee-ec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCC-CcEEE
Q 005352 365 NNYLLSASIDKTVRLWRVGNDHCLRV-FP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIR-QIVTA 441 (701)
Q Consensus 365 ~~~l~s~s~dg~I~iWd~~~~~~~~~-~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~-~~i~~ 441 (701)
.++|+.|+.-|...+|...+.+.... .. +...|+-+.=......-+..++.|.++++.++..+......... -.+.+
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns 163 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNS 163 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceee
Confidence 34899999999999999886643322 22 44433322111102234566778888888887654332211111 23889
Q ss_pred EEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccce
Q 005352 442 VCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIG 521 (701)
Q Consensus 442 i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~ 521 (701)
+.++++++++++.+....|-+|.+......... +. .......-.+..|+. ....++++..||.+.|||++....
T Consensus 164 ~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~-~~----~a~t~D~gF~~S~s~-~~~~FAv~~Qdg~~~I~DVR~~~t 237 (344)
T KOG4532|consen 164 LHYSNDPSWGSSVGDSRRVFRYAIDDESEYIEN-IY----EAPTSDHGFYNSFSE-NDLQFAVVFQDGTCAIYDVRNMAT 237 (344)
T ss_pred eEEcCCCceEEEecCCCcceEEEeCCccceeee-eE----ecccCCCceeeeecc-CcceEEEEecCCcEEEEEeccccc
Confidence 999999999999999999999999876543322 11 111222334566777 678899999999999999985332
Q ss_pred ee-----ecccCCCCeEEEEEecCC--CEEEEEeCCCcEEEEeCCCCC
Q 005352 522 KY-----KGLRRSGNQLSACFTSDG--KHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 522 ~~-----~~~~~~~~v~~l~~s~dg--~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
.. ....|.+.+..+.|++-| .+|+..-.-+.+.+-|+++..
T Consensus 238 pm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~ 285 (344)
T KOG4532|consen 238 PMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYV 285 (344)
T ss_pred chhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCc
Confidence 21 122388999999999866 355555556889999998876
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.40 E-value=4.9e-06 Score=83.52 Aligned_cols=155 Identities=13% Similarity=0.059 Sum_probs=106.9
Q ss_pred EEEEEecCC-eEEEEECCCcEEEEECCCCe----eeeeecCCCCeEEEEEeeCCCCEEEEEEcCC---cEEEEeCCCCcE
Q 005352 358 LDLSWSKNN-YLLSASIDKTVRLWRVGNDH----CLRVFPHSNYVTCVHFNPVDDNYFISGSIDG---KVRIWAVLSCHV 429 (701)
Q Consensus 358 ~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~----~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg---~v~iwd~~~~~~ 429 (701)
..+..++.+ +|+.+..++...++++.... ++..+......+.+.|.. +......+..-| .+.+|....+..
T Consensus 66 ~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~-~~~sv~v~dkagD~~~~di~s~~~~~~ 144 (390)
T KOG3914|consen 66 ALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIR-EDTSVLVADKAGDVYSFDILSADSGRC 144 (390)
T ss_pred cccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeee-ccceEEEEeecCCceeeeeecccccCc
Confidence 334456666 66666666666666654432 333333444455566655 444444444334 455555555778
Q ss_pred EEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCC
Q 005352 430 VDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADS 509 (701)
Q Consensus 430 ~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg 509 (701)
....+|-..++.++++||+++++++..|..|++-....... .....-+|..-|..++.-+ ++.|++++.|+
T Consensus 145 ~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~-------IesfclGH~eFVS~isl~~--~~~LlS~sGD~ 215 (390)
T KOG3914|consen 145 EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFV-------IESFCLGHKEFVSTISLTD--NYLLLSGSGDK 215 (390)
T ss_pred chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccc-------hhhhccccHhheeeeeecc--CceeeecCCCC
Confidence 88899999999999999999999999999999977764322 2233445667888888877 46699999999
Q ss_pred cEEEEeCCcccee
Q 005352 510 QVRILQGPNVIGK 522 (701)
Q Consensus 510 ~I~iwd~~~~~~~ 522 (701)
+|++||+.+....
T Consensus 216 tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 216 TLRLWDITSGKLL 228 (390)
T ss_pred cEEEEecccCCcc
Confidence 9999998865443
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.00016 Score=70.05 Aligned_cols=241 Identities=14% Similarity=0.142 Sum_probs=122.7
Q ss_pred ccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCC
Q 005352 213 EEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPE 292 (701)
Q Consensus 213 ~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~ 292 (701)
+..+++.-.|..|.|...+....... .+.+.-+.-...=.-++||||+.+||.+...|+|+++|+..... ..+....
T Consensus 8 ~Gk~lAi~qd~~iEiRsa~Ddf~si~--~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~l-f~I~p~~ 84 (282)
T PF15492_consen 8 DGKLLAILQDQCIEIRSAKDDFSSII--GKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSEL-FVIPPAM 84 (282)
T ss_pred CCcEEEEEeccEEEEEeccCCchhee--EEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccccee-EEcCccc
Confidence 34555567778888876554322211 11122222233457899999999999999999999999875432 1111100
Q ss_pred CCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecC-------
Q 005352 293 IDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN------- 365 (701)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~------- 365 (701)
. +.. .-...|..+.|.+.
T Consensus 85 ~------~~~-------------------------------------------------d~~~Aiagl~Fl~~~~s~~ws 109 (282)
T PF15492_consen 85 S------FPG-------------------------------------------------DLSDAIAGLIFLEYKKSAQWS 109 (282)
T ss_pred c------cCC-------------------------------------------------ccccceeeeEeeccccccccc
Confidence 0 000 00122333332211
Q ss_pred CeEEEEECCCcEEEEECCC-----Ceeeeeec----CCCCeEEEEEeeCCCCEEEEEEcCCc-EEEEeCCCCcEEEEecC
Q 005352 366 NYLLSASIDKTVRLWRVGN-----DHCLRVFP----HSNYVTCVHFNPVDDNYFISGSIDGK-VRIWAVLSCHVVDWVDI 435 (701)
Q Consensus 366 ~~l~s~s~dg~I~iWd~~~-----~~~~~~~~----h~~~V~~l~f~p~~~~~l~sgs~dg~-v~iwd~~~~~~~~~~~~ 435 (701)
..|+.-...|.++-|-+.. .+....|. +...|.++.++| ..++|+.|+.... -..+.....-+..+.-.
T Consensus 110 ~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p-~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL 188 (282)
T PF15492_consen 110 YELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHP-KHRLLLVGGCEQNQDGMSKASSCGLTAWRIL 188 (282)
T ss_pred eeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcC-CCCEEEEeccCCCCCccccccccCceEEEEc
Confidence 1566666777777665422 22333333 577899999999 6677776653321 00010000001111111
Q ss_pred CCcEEEEEE-eeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEE
Q 005352 436 RQIVTAVCY-RPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRIL 514 (701)
Q Consensus 436 ~~~i~~i~~-sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iw 514 (701)
.+......+ ..+...-.... +..+|.+-+. ............|..+..+| ++..|++...+|.|.+|
T Consensus 189 ~~~Pyyk~v~~~~~~~~~~~~---~~~~~~~~~~--------~~fs~~~~~~d~i~kmSlSP-dg~~La~ih~sG~lsLW 256 (282)
T PF15492_consen 189 SDSPYYKQVTSSEDDITASSK---RRGLLRIPSF--------KFFSRQGQEQDGIFKMSLSP-DGSLLACIHFSGSLSLW 256 (282)
T ss_pred CCCCcEEEccccCcccccccc---ccceeeccce--------eeeeccccCCCceEEEEECC-CCCEEEEEEcCCeEEEE
Confidence 111111000 00000100111 1122222211 11222334457799999999 89999999999999999
Q ss_pred eCCccceeee
Q 005352 515 QGPNVIGKYK 524 (701)
Q Consensus 515 d~~~~~~~~~ 524 (701)
++........
T Consensus 257 ~iPsL~~~~~ 266 (282)
T PF15492_consen 257 EIPSLRLQRS 266 (282)
T ss_pred ecCcchhhcc
Confidence 9986654443
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.38 E-value=8.9e-07 Score=86.76 Aligned_cols=148 Identities=16% Similarity=0.164 Sum_probs=113.7
Q ss_pred EEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCee
Q 005352 411 ISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRIT 490 (701)
Q Consensus 411 ~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~ 490 (701)
++.+.+-.|-+-|+.++....+. ..+.|.++.|...++.++.|..+|.|..+|++....-.. .......|...|+
T Consensus 228 fs~G~sqqv~L~nvetg~~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~----~~a~rlyh~Ssvt 302 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNG----WCAQRLYHDSSVT 302 (425)
T ss_pred ecccccceeEEEEeecccccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCC----cceEEEEcCcchh
Confidence 45556778889999888655444 678899999999899999999999999999987521110 0111234668899
Q ss_pred EEEEecCCCCEEEEEECCCcEEEEeCCcc-----ceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCC
Q 005352 491 GFQFLPQDSSKVMVSCADSQVRILQGPNV-----IGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEE 563 (701)
Q Consensus 491 ~l~~~p~~~~~l~~~s~dg~I~iwd~~~~-----~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~ 563 (701)
+++....++++|++.+.+|+|.+||.+.. ...+.+|.+...-.-+-..+....|++++.|...+||.++.+..
T Consensus 303 slq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghL 380 (425)
T KOG2695|consen 303 SLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHL 380 (425)
T ss_pred hhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCce
Confidence 99888878899999999999999998743 44566655555555556677788999999999999999998873
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.00023 Score=76.68 Aligned_cols=191 Identities=14% Similarity=0.067 Sum_probs=116.6
Q ss_pred CCeEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcEEEE--
Q 005352 365 NNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAV-- 442 (701)
Q Consensus 365 ~~~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i-- 442 (701)
++.++.++.++.+..+|..+++.+........+.+--.- .+..++.+..++.|..+|..+++.+-......+...+
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~ 197 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRG 197 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccC
Confidence 447777888999999999999998888755544332111 2456677778999999999999887443322211000
Q ss_pred EEee--CCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEec-CCCCEEEEEECCCcEEEEeCCcc
Q 005352 443 CYRP--DGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLP-QDSSKVMVSCADSQVRILQGPNV 519 (701)
Q Consensus 443 ~~sp--~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p-~~~~~l~~~s~dg~I~iwd~~~~ 519 (701)
.-+| .+..+++++.+|.+..+|..+++............. ........+...| -.+..+++++.++.+.-+|..+.
T Consensus 198 ~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~-~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG 276 (394)
T PRK11138 198 ESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGA-TEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSG 276 (394)
T ss_pred CCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCc-cchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCC
Confidence 0111 234677888899999999998876543322110000 0000000011111 02456777788999999998876
Q ss_pred ceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 520 IGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 520 ~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
....+... .....+. ..+..|+.++.+|.++.+|..+++
T Consensus 277 ~~~W~~~~--~~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~ 315 (394)
T PRK11138 277 QIVWKREY--GSVNDFA--VDGGRIYLVDQNDRVYALDTRGGV 315 (394)
T ss_pred CEEEeecC--CCccCcE--EECCEEEEEcCCCeEEEEECCCCc
Confidence 65554321 1111222 246678888899999999998886
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.37 E-value=4.1e-06 Score=84.88 Aligned_cols=249 Identities=16% Similarity=0.175 Sum_probs=157.8
Q ss_pred ccCcceee-ecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeC-CCcEEEEEe
Q 005352 202 KQGEGERV-RLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGD-DGVVRLWQV 279 (701)
Q Consensus 202 ~~~~~~~~-~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~-Dg~I~iWd~ 279 (701)
|+..+..+ ....+..+.++-||.++.|.-.. .....-...+++|.+.|.+++.+-+|.++.|.+. |..++++|+
T Consensus 8 hrd~i~hv~~tka~fiiqASlDGh~KFWkKs~----isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDv 83 (558)
T KOG0882|consen 8 HRDVITHVFPTKAKFIIQASLDGHKKFWKKSR----ISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDV 83 (558)
T ss_pred ccceeeeEeeehhheEEeeecchhhhhcCCCC----ccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEe
Confidence 33444333 33446677799999999995322 1112222346779999999999999999999888 999999999
Q ss_pred ecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEE
Q 005352 280 VEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILD 359 (701)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~ 359 (701)
++-..+.-+++...+..+......+ ..+..+..+ ...+..+.+++...- .......-.-|..+|.+
T Consensus 84 En~DminmiKL~~lPg~a~wv~skG-d~~s~IAVs-----------~~~sg~i~VvD~~~d--~~q~~~fkklH~sPV~~ 149 (558)
T KOG0882|consen 84 ENFDMINMIKLVDLPGFAEWVTSKG-DKISLIAVS-----------LFKSGKIFVVDGFGD--FCQDGYFKKLHFSPVKK 149 (558)
T ss_pred eccchhhhcccccCCCceEEecCCC-CeeeeEEee-----------cccCCCcEEECCcCC--cCccceecccccCceEE
Confidence 8876554444444333333222221 111111111 111112222222110 01223334569999999
Q ss_pred EEEecCC-eEEEEECCCcEEEEECCC------Ceeeeee----------cCCCCeEEEEEeeCCCCEEEEEEcCCcEEEE
Q 005352 360 LSWSKNN-YLLSASIDKTVRLWRVGN------DHCLRVF----------PHSNYVTCVHFNPVDDNYFISGSIDGKVRIW 422 (701)
Q Consensus 360 l~~s~~~-~l~s~s~dg~I~iWd~~~------~~~~~~~----------~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iw 422 (701)
+.+++-+ .+++....|.|.-|.... .+....+ +.....+++.|+| ++..+.+-+.|..|+++
T Consensus 150 i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp-~g~qistl~~DrkVR~F 228 (558)
T KOG0882|consen 150 IRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSP-DGAQISTLNPDRKVRGF 228 (558)
T ss_pred EEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEcc-ccCcccccCcccEEEEE
Confidence 9999988 888888899999998863 1111112 1456788999999 99999999999999999
Q ss_pred eCCCCcEEEEecC----------------------------------CCcEEEEEEeeCCCeEEEEecCCcEEEEECCCC
Q 005352 423 AVLSCHVVDWVDI----------------------------------RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDN 468 (701)
Q Consensus 423 d~~~~~~~~~~~~----------------------------------~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~ 468 (701)
+..++++++.++. ...-+.++|...|++|+-|+.=| |++.++.++
T Consensus 229 ~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn 307 (558)
T KOG0882|consen 229 VFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTN 307 (558)
T ss_pred EeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecC
Confidence 9998865432210 01235577777888888777644 677777766
Q ss_pred ee
Q 005352 469 HL 470 (701)
Q Consensus 469 ~~ 470 (701)
..
T Consensus 308 ~v 309 (558)
T KOG0882|consen 308 TV 309 (558)
T ss_pred eE
Confidence 54
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.2e-05 Score=86.29 Aligned_cols=177 Identities=12% Similarity=0.120 Sum_probs=134.6
Q ss_pred eEEEEECCCcEEEEECCCCeeeeeecC-CCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEE-ecCCCcEEEEEE
Q 005352 367 YLLSASIDKTVRLWRVGNDHCLRVFPH-SNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDW-VDIRQIVTAVCY 444 (701)
Q Consensus 367 ~l~s~s~dg~I~iWd~~~~~~~~~~~h-~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~-~~~~~~i~~i~~ 444 (701)
.++.|+....+..+|+++.+..+...- ...|+-+.. +++++.+|...|+|.+-|.++.+.+.. ..|.+.|..+.
T Consensus 149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfD- 224 (1118)
T KOG1275|consen 149 TLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFD- 224 (1118)
T ss_pred ceeecchhhheeeeecccceeeeeeeccCCceEEEEe---cCcEEEeecccceEEeecCCcCceeeeeeccccceeeee-
Confidence 677788888899999999888877763 334666654 678999999999999999999988854 45777777655
Q ss_pred eeCCCeEEEEec---------CCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEe
Q 005352 445 RPDGQGGIVGSM---------MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQ 515 (701)
Q Consensus 445 sp~g~~l~~gs~---------dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd 515 (701)
-.|+.|++++. |..|++||+++.+.....++ .....-+.|+|.-...+++++..|+..+.|
T Consensus 225 -v~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~---------~~~P~flrf~Psl~t~~~V~S~sGq~q~vd 294 (1118)
T KOG1275|consen 225 -VQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQF---------PYGPQFLRFHPSLTTRLAVTSQSGQFQFVD 294 (1118)
T ss_pred -ccCCeEEEeecccccccccccchhhhhhhhhhhccCCccc---------ccCchhhhhcccccceEEEEecccceeecc
Confidence 46788888765 45589999998654322111 112255778887788999999999999999
Q ss_pred ---CCcc-ceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEe
Q 005352 516 ---GPNV-IGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWN 557 (701)
Q Consensus 516 ---~~~~-~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd 557 (701)
+.+. ...+........+..++++++|+.|+.|..+|.|.+|.
T Consensus 295 ~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 295 TATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 4333 33334444556699999999999999999999999998
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.24 E-value=2.9e-06 Score=57.71 Aligned_cols=37 Identities=41% Similarity=0.809 Sum_probs=34.8
Q ss_pred CCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEE
Q 005352 345 KPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWR 381 (701)
Q Consensus 345 ~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd 381 (701)
++++.+.+|...|.+|+|+|++ +|++++.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 4678899999999999999998 999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.24 E-value=3.1e-06 Score=83.02 Aligned_cols=122 Identities=9% Similarity=0.216 Sum_probs=95.3
Q ss_pred CccCeEEEEEecCC-eEEEEECCCcEEEEECCCC-----eeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCC
Q 005352 353 HSGEILDLSWSKNN-YLLSASIDKTVRLWRVGND-----HCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS 426 (701)
Q Consensus 353 h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~-----~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~ 426 (701)
.++.|.++.|...+ +++.|..+|.|...|++.+ .+...+-|...|++++....++.+|++.+.+|+|++||++.
T Consensus 251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~ 330 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRA 330 (425)
T ss_pred cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehh
Confidence 45788899998866 9999999999999999865 56777889999999988766788999999999999999987
Q ss_pred CcE---E-EEecCCCcE--EEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeee
Q 005352 427 CHV---V-DWVDIRQIV--TAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDA 474 (701)
Q Consensus 427 ~~~---~-~~~~~~~~i--~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~ 474 (701)
-++ + ...+|-..- .-+-+.+....+++++.|-..+||.++.+++..+.
T Consensus 331 ~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~ti 384 (425)
T KOG2695|consen 331 TKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTI 384 (425)
T ss_pred hhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeecc
Confidence 655 3 333342221 11233456667888999999999999999876543
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.6e-05 Score=87.33 Aligned_cols=184 Identities=14% Similarity=0.196 Sum_probs=135.4
Q ss_pred ecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeec
Q 005352 210 RLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVD 289 (701)
Q Consensus 210 ~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~ 289 (701)
..+++.++.|+--..+..+|+.+.... +...-..+.|+-|+. ++++|.+|...|+|.+-|..+.
T Consensus 144 ~~~~~~~i~Gg~Q~~li~~Dl~~~~e~-------r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~------- 207 (1118)
T KOG1275|consen 144 HMGPSTLIMGGLQEKLIHIDLNTEKET-------RTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSF------- 207 (1118)
T ss_pred ccCCcceeecchhhheeeeecccceee-------eeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcC-------
Confidence 345566677777777777776543211 111112334666655 6789999999999999998765
Q ss_pred CCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCCeEE
Q 005352 290 IPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLL 369 (701)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~l~ 369 (701)
+.++++..|.+.|.++... .+.|+
T Consensus 208 -------------------------------------------------------~~iht~~aHs~siSDfDv~-GNlLi 231 (1118)
T KOG1275|consen 208 -------------------------------------------------------ETIHTFDAHSGSISDFDVQ-GNLLI 231 (1118)
T ss_pred -------------------------------------------------------ceeeeeeccccceeeeecc-CCeEE
Confidence 4567888999999988764 22788
Q ss_pred EEEC---------CCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEe---CCCCc--EEEEecC
Q 005352 370 SASI---------DKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWA---VLSCH--VVDWVDI 435 (701)
Q Consensus 370 s~s~---------dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd---~~~~~--~~~~~~~ 435 (701)
+++. |.-|+|||++..+.+..++......-+.|+|.-...+++++..|...+-| +.+.. .......
T Consensus 232 tCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~ 311 (1118)
T KOG1275|consen 232 TCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPN 311 (1118)
T ss_pred EeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccC
Confidence 8765 45689999999888887775555577889997778899999999999999 43332 2233334
Q ss_pred CCcEEEEEEeeCCCeEEEEecCCcEEEEEC
Q 005352 436 RQIVTAVCYRPDGQGGIVGSMMGDCRFYNV 465 (701)
Q Consensus 436 ~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~ 465 (701)
...+.+++++++++.++.|..+|.|.+|--
T Consensus 312 ~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 312 GSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred CCcceeEEecCCCceEEEecccCcEeeecC
Confidence 455999999999999999999999999983
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.20 E-value=7.3e-05 Score=75.14 Aligned_cols=82 Identities=16% Similarity=0.217 Sum_probs=72.9
Q ss_pred CeEEEcCCccCeEEEEEecCC--eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEe
Q 005352 346 PLHEFHGHSGEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWA 423 (701)
Q Consensus 346 ~~~~~~~h~~~I~~l~~s~~~--~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd 423 (701)
+..-+.+|...|.+++|+|.. ++..++.+.+|+|.|+++..++..+.....+.+++|.-.+.+++.+|-.+|.|.|||
T Consensus 185 ssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD 264 (463)
T KOG1645|consen 185 SSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYD 264 (463)
T ss_pred hhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEEE
Confidence 344667888999999999976 788999999999999999999999987799999999986778899999999999999
Q ss_pred CCCC
Q 005352 424 VLSC 427 (701)
Q Consensus 424 ~~~~ 427 (701)
++..
T Consensus 265 ~R~~ 268 (463)
T KOG1645|consen 265 MRQP 268 (463)
T ss_pred ccCC
Confidence 9864
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.3e-06 Score=94.87 Aligned_cols=202 Identities=16% Similarity=0.206 Sum_probs=132.1
Q ss_pred hhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeecc
Q 005352 236 ELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDK 315 (701)
Q Consensus 236 ~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (701)
-++.+.....++.|+..-+|++|+-+.+.|+.|+..|.|+++++.+|.....+..+......+.-...+...+....++.
T Consensus 1087 IFSRFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~ 1166 (1516)
T KOG1832|consen 1087 IFSRFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSS 1166 (1516)
T ss_pred hHhhcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccC
Confidence 44555556678889999999999999999999999999999999999877777666554433322222222111111111
Q ss_pred ccceeeEEeeecCCccEEEcCCcccccc--CCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeee-
Q 005352 316 EKISILKSLRRTSESACVVFPPKVFRIL--EKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVF- 391 (701)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~- 391 (701)
.-. ..|+.. ..+.+.|.+ -.++.|+... .-+.|..-....+||+.++..+.++
T Consensus 1167 Pls-------------------aLW~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tyl 1223 (1516)
T KOG1832|consen 1167 PLS-------------------ALWDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYL 1223 (1516)
T ss_pred chH-------------------HHhccccccCccccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhc
Confidence 000 011111 134444443 4578888765 3344444467899999999877764
Q ss_pred c----CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCC
Q 005352 392 P----HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSD 467 (701)
Q Consensus 392 ~----h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~ 467 (701)
. ....-++..|+| ++.+++ .|| .+||++..+.+..++.-..-..=.|+|.|..++..+. |||+++
T Consensus 1224 t~~~~~~y~~n~a~FsP-~D~LIl---ndG--vLWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVIINSE-----IwD~RT 1292 (1516)
T KOG1832|consen 1224 TDTVTSSYSNNLAHFSP-CDTLIL---NDG--VLWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVIINSE-----IWDMRT 1292 (1516)
T ss_pred CcchhhhhhccccccCC-CcceEe---eCc--eeeeeccHHHHhhhhhheecccccccCCCceEEeech-----hhhhHH
Confidence 2 222337888999 777665 355 4799998877765544333334579999999998774 999998
Q ss_pred Ceee
Q 005352 468 NHLE 471 (701)
Q Consensus 468 ~~~~ 471 (701)
-++.
T Consensus 1293 F~lL 1296 (1516)
T KOG1832|consen 1293 FKLL 1296 (1516)
T ss_pred HHHH
Confidence 7653
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00021 Score=77.84 Aligned_cols=144 Identities=14% Similarity=0.010 Sum_probs=97.4
Q ss_pred CCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEE--------------------------------------
Q 005352 373 IDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGS-------------------------------------- 414 (701)
Q Consensus 373 ~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs-------------------------------------- 414 (701)
..+.+.+.|..+.+...++.-.+....++++| ++.++++.+
T Consensus 213 y~~~vSvID~etmeV~~qV~Vdgnpd~v~~sp-dGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~ 291 (635)
T PRK02888 213 YRSLFTAVDAETMEVAWQVMVDGNLDNVDTDY-DGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFK 291 (635)
T ss_pred eeEEEEEEECccceEEEEEEeCCCcccceECC-CCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEE
Confidence 34567777888777776665444556667777 666665554
Q ss_pred --cCCcEEEEeCCC-----CcEEEEecCCCcEEEEEEeeCCCeEEEEec-CCcEEEEECCCCeeeeeeeEE----eeccc
Q 005352 415 --IDGKVRIWAVLS-----CHVVDWVDIRQIVTAVCYRPDGQGGIVGSM-MGDCRFYNVSDNHLELDAEIC----VHSKK 482 (701)
Q Consensus 415 --~dg~v~iwd~~~-----~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~-dg~v~i~d~~~~~~~~~~~~~----~~~~~ 482 (701)
.++.|.+.|..+ .+++..+........+.++|||+++++++. +++|.++|+.+.+......+. +....
T Consensus 292 ~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaev 371 (635)
T PRK02888 292 TIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEP 371 (635)
T ss_pred EECCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEee
Confidence 134588888887 466677778888999999999999888765 899999999875532111111 11111
Q ss_pred CCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCcc
Q 005352 483 KAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV 519 (701)
Q Consensus 483 ~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~ 519 (701)
.....-...+|.+ ++..+.+-..|++|..|++...
T Consensus 372 -evGlGPLHTaFDg-~G~aytslf~dsqv~kwn~~~a 406 (635)
T PRK02888 372 -ELGLGPLHTAFDG-RGNAYTTLFLDSQIVKWNIEAA 406 (635)
T ss_pred -ccCCCcceEEECC-CCCEEEeEeecceeEEEehHHH
Confidence 1123344567777 5677777888999999998753
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.0021 Score=64.40 Aligned_cols=231 Identities=14% Similarity=0.125 Sum_probs=144.0
Q ss_pred EEEEcc-CCCEEEEEeCCCc-EEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccE
Q 005352 255 TMKFSP-DGQYLASAGDDGV-VRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESAC 332 (701)
Q Consensus 255 ~l~fsp-dg~~Lasgs~Dg~-I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (701)
.++.+| .+..++.+-.-|+ ..+||..+++.+..+..
T Consensus 9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a------------------------------------------ 46 (305)
T PF07433_consen 9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWA------------------------------------------ 46 (305)
T ss_pred ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcC------------------------------------------
Confidence 577788 5666777777665 57899988876554432
Q ss_pred EEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEEC-----CCcEEEEECC-CCeeeeeec-CCCCeEEEEEee
Q 005352 333 VVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASI-----DKTVRLWRVG-NDHCLRVFP-HSNYVTCVHFNP 404 (701)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~-----dg~I~iWd~~-~~~~~~~~~-h~~~V~~l~f~p 404 (701)
.+-+.|.||. .|+++| +|++.-. .|.|-|||.. +.+.+..|. +.-....+.+.|
T Consensus 47 ------------~~gRHFyGHg------~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~p 108 (305)
T PF07433_consen 47 ------------PPGRHFYGHG------VFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMP 108 (305)
T ss_pred ------------CCCCEEecCE------EEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcC
Confidence 2335677883 689999 6666533 4789999998 566777776 444566778888
Q ss_pred CCCCEEEEEEc------------------CCcEEEEeCCCCcEEEEe-----cCCCcEEEEEEeeCCCeEEEEecCCc--
Q 005352 405 VDDNYFISGSI------------------DGKVRIWAVLSCHVVDWV-----DIRQIVTAVCYRPDGQGGIVGSMMGD-- 459 (701)
Q Consensus 405 ~~~~~l~sgs~------------------dg~v~iwd~~~~~~~~~~-----~~~~~i~~i~~sp~g~~l~~gs~dg~-- 459 (701)
++..|+.+-. +-.+.+.|..+++++... .+.-.|..+++.++|..++..-..|.
T Consensus 109 -DG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~ 187 (305)
T PF07433_consen 109 -DGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPG 187 (305)
T ss_pred -CCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCC
Confidence 8877766531 234556677788877442 24567999999999876666544433
Q ss_pred -----EEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEE-EEEECCCcEEEEeCCccceeeecccCCCCeE
Q 005352 460 -----CRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKV-MVSCADSQVRILQGPNVIGKYKGLRRSGNQL 533 (701)
Q Consensus 460 -----v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l-~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~ 533 (701)
+-+++....-..+. . ...........+-+|++++ ++..+ +++-..+.+.+||..+....-.. .-..+.
T Consensus 188 ~~~PLva~~~~g~~~~~~~--~-p~~~~~~l~~Y~gSIa~~~-~g~~ia~tsPrGg~~~~~d~~tg~~~~~~--~l~D~c 261 (305)
T PF07433_consen 188 DAPPLVALHRRGGALRLLP--A-PEEQWRRLNGYIGSIAADR-DGRLIAVTSPRGGRVAVWDAATGRLLGSV--PLPDAC 261 (305)
T ss_pred ccCCeEEEEcCCCcceecc--C-ChHHHHhhCCceEEEEEeC-CCCEEEEECCCCCEEEEEECCCCCEeecc--ccCcee
Confidence 33333222110000 0 0001123346789999999 55555 55556889999998765543332 344566
Q ss_pred EEEEecCCCEEEEEeCCCcEE
Q 005352 534 SACFTSDGKHIVSAGEDSNVY 554 (701)
Q Consensus 534 ~l~~s~dg~~l~sgs~Dg~I~ 554 (701)
.++-.+++ +++|.+ .|.+.
T Consensus 262 Gva~~~~~-f~~ssG-~G~~~ 280 (305)
T PF07433_consen 262 GVAPTDDG-FLVSSG-QGQLI 280 (305)
T ss_pred eeeecCCc-eEEeCC-CccEE
Confidence 67766666 566554 45433
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00024 Score=77.64 Aligned_cols=145 Identities=14% Similarity=0.163 Sum_probs=103.4
Q ss_pred ecCC-eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCC-----CCEEEEEEcCCcEEEEeCC---CCcEEEEe
Q 005352 363 SKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVD-----DNYFISGSIDGKVRIWAVL---SCHVVDWV 433 (701)
Q Consensus 363 s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~-----~~~l~sgs~dg~v~iwd~~---~~~~~~~~ 433 (701)
..+| +++|||.||+|.|-.+-+.+...++....++.+++++| + .+.+++|+.-| +.++.-+ ....+...
T Consensus 80 ~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~rpiksial~P-d~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~ 157 (846)
T KOG2066|consen 80 ILEGEYVASCSDDGKVVIGSLFTDDEITQYDFKRPIKSIALHP-DFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLS 157 (846)
T ss_pred ccCCceEEEecCCCcEEEeeccCCccceeEecCCcceeEEecc-chhhhhhhheeecCcce-EEEehhhhhcCccceeee
Confidence 3456 99999999999999999999888888889999999999 5 56799999888 7776432 22333455
Q ss_pred cCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEE
Q 005352 434 DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRI 513 (701)
Q Consensus 434 ~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~i 513 (701)
...++|.+++|. |+++|-++.+| |++||+...+.....+... ........-..+.|.+ ...|+.| ...+|+|
T Consensus 158 ~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~--~~~R~e~fpphl~W~~--~~~LVIG-W~d~v~i 229 (846)
T KOG2066|consen 158 EGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPS--QSVRPELFPPHLHWQD--EDRLVIG-WGDSVKI 229 (846)
T ss_pred cCccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCC--CCCCcccCCCceEecC--CCeEEEe-cCCeEEE
Confidence 667899999996 66888777666 8999999877654332222 1122223345577766 3444444 4457888
Q ss_pred EeCC
Q 005352 514 LQGP 517 (701)
Q Consensus 514 wd~~ 517 (701)
..++
T Consensus 230 ~~I~ 233 (846)
T KOG2066|consen 230 CSIK 233 (846)
T ss_pred EEEe
Confidence 7766
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.0008 Score=74.20 Aligned_cols=168 Identities=13% Similarity=0.177 Sum_probs=105.5
Q ss_pred EEEcCCccC-eEEEEEecCC-eEEEEECCC-----cEEEEECCCC------eee---eeec-----CCCCeEEEEEeeCC
Q 005352 348 HEFHGHSGE-ILDLSWSKNN-YLLSASIDK-----TVRLWRVGND------HCL---RVFP-----HSNYVTCVHFNPVD 406 (701)
Q Consensus 348 ~~~~~h~~~-I~~l~~s~~~-~l~s~s~dg-----~I~iWd~~~~------~~~---~~~~-----h~~~V~~l~f~p~~ 406 (701)
+.++.+... |..+...... +|++.+.|+ .|+||+++.- +++ +.+. .+.++.+++.+. +
T Consensus 58 ~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~-~ 136 (933)
T KOG2114|consen 58 RGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSE-D 136 (933)
T ss_pred ehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEc-c
Confidence 334445555 4444333332 777777765 4999998532 344 3333 356788999998 8
Q ss_pred CCEEEEEEcCCcEEEEeCC-----CCcEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecc
Q 005352 407 DNYFISGSIDGKVRIWAVL-----SCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSK 481 (701)
Q Consensus 407 ~~~l~sgs~dg~v~iwd~~-----~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~ 481 (701)
-+.+|+|..+|.|..+.-. ..+.......+++|+.+.+..+++.++-......|.+|.+....... . .
T Consensus 137 l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~----~---~ 209 (933)
T KOG2114|consen 137 LKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSL----K---V 209 (933)
T ss_pred ccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcce----e---e
Confidence 8999999999999998421 11233344567899999999999874334444679999998543111 1 1
Q ss_pred cCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeec
Q 005352 482 KKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKG 525 (701)
Q Consensus 482 ~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~ 525 (701)
...+...+.|..+++..++ ++++ ....+.+|+.......+..
T Consensus 210 ld~~G~~lnCss~~~~t~q-fIca-~~e~l~fY~sd~~~~cfaf 251 (933)
T KOG2114|consen 210 LDNNGISLNCSSFSDGTYQ-FICA-GSEFLYFYDSDGRGPCFAF 251 (933)
T ss_pred eccCCccceeeecCCCCcc-EEEe-cCceEEEEcCCCcceeeee
Confidence 2334567788888873332 4333 3457899987754444433
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.0036 Score=62.56 Aligned_cols=187 Identities=11% Similarity=0.054 Sum_probs=120.4
Q ss_pred EEEEec-CC-eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecC-
Q 005352 359 DLSWSK-NN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDI- 435 (701)
Q Consensus 359 ~l~~s~-~~-~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~- 435 (701)
++.|.+ ++ ++++--..+.|..|+..+++... +.... ...+++...+ ..|+.+... .+.++|..+++...+...
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~-~~G~~~~~~~-g~l~v~~~~-~~~~~d~~~g~~~~~~~~~ 79 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG-PNGMAFDRPD-GRLYVADSG-GIAVVDPDTGKVTVLADLP 79 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS-EEEEEEECTT-SEEEEEETT-CEEEEETTTTEEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC-CceEEEEccC-CEEEEEEcC-ceEEEecCCCcEEEEeecc
Confidence 568887 56 55555568899999998876543 33333 7788888415 555555544 466669999876544332
Q ss_pred -----CCcEEEEEEeeCCCeEEEEecC--------CcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEE
Q 005352 436 -----RQIVTAVCYRPDGQGGIVGSMM--------GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKV 502 (701)
Q Consensus 436 -----~~~i~~i~~sp~g~~l~~gs~d--------g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l 502 (701)
....+.+++.|+|+..++.... |.|..++.. ++...... .....++++|+|++..++
T Consensus 80 ~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~---------~~~~pNGi~~s~dg~~ly 149 (246)
T PF08450_consen 80 DGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD---------GLGFPNGIAFSPDGKTLY 149 (246)
T ss_dssp TTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE---------EESSEEEEEEETTSSEEE
T ss_pred CCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec---------CcccccceEECCcchhee
Confidence 3458899999999966665443 557777776 34322111 114468999999433445
Q ss_pred EEEECCCcEEEEeCCccc------eeee-cccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 005352 503 MVSCADSQVRILQGPNVI------GKYK-GLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCI 559 (701)
Q Consensus 503 ~~~s~dg~I~iwd~~~~~------~~~~-~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~ 559 (701)
++-+..+.|..++..... ..+. .....+..-.+++..+|++.++.-..+.|.+++.+
T Consensus 150 v~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~ 213 (246)
T PF08450_consen 150 VADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD 213 (246)
T ss_dssp EEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT
T ss_pred ecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC
Confidence 566778899999875221 1221 11122347789999999988888889999999976
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0028 Score=68.24 Aligned_cols=178 Identities=10% Similarity=-0.008 Sum_probs=107.9
Q ss_pred CeEEEEECCCcEEEEECCCCeeeeeecCCCC--------eEEEEEee-CCCCEEEEEEcCCcEEEEeCCCCcEEEEecCC
Q 005352 366 NYLLSASIDKTVRLWRVGNDHCLRVFPHSNY--------VTCVHFNP-VDDNYFISGSIDGKVRIWAVLSCHVVDWVDIR 436 (701)
Q Consensus 366 ~~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~--------V~~l~f~p-~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~ 436 (701)
+.++.++.++.+..+|..+++.+..+....+ ...+.-+| ..+..++.++.+|.+..+|..+++.+-.....
T Consensus 206 ~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~ 285 (394)
T PRK11138 206 GGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYG 285 (394)
T ss_pred CEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCC
Confidence 4566677788888888888877665531110 01111111 12456677778999999999999876333222
Q ss_pred CcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeC
Q 005352 437 QIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQG 516 (701)
Q Consensus 437 ~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~ 516 (701)
. ...+ ...+..+++++.+|.+..+|..+++........ ......+..+ .+..+++++.+|.|+.+|.
T Consensus 286 ~-~~~~--~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~-------~~~~~~sp~v---~~g~l~v~~~~G~l~~ld~ 352 (394)
T PRK11138 286 S-VNDF--AVDGGRIYLVDQNDRVYALDTRGGVELWSQSDL-------LHRLLTAPVL---YNGYLVVGDSEGYLHWINR 352 (394)
T ss_pred C-ccCc--EEECCEEEEEcCCCeEEEEECCCCcEEEccccc-------CCCcccCCEE---ECCEEEEEeCCCEEEEEEC
Confidence 1 1112 234668888889999999999988754322110 0011111222 2467888999999999998
Q ss_pred CccceeeecccCCCCeE-EEEEecCCCEEEEEeCCCcEEEEeC
Q 005352 517 PNVIGKYKGLRRSGNQL-SACFTSDGKHIVSAGEDSNVYMWNC 558 (701)
Q Consensus 517 ~~~~~~~~~~~~~~~v~-~l~~s~dg~~l~sgs~Dg~I~iWd~ 558 (701)
.+.....+.......+. ...+ .+..|+.++.||.|+.++.
T Consensus 353 ~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 353 EDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred CCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 87655444322222222 2222 2457888899999998764
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00014 Score=73.29 Aligned_cols=80 Identities=13% Similarity=0.210 Sum_probs=61.1
Q ss_pred CceeccCCCcEEEEEEccCCC-EEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceee
Q 005352 243 GQEIQAHDGSILTMKFSPDGQ-YLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISIL 321 (701)
Q Consensus 243 ~~~l~~H~~~I~~l~fspdg~-~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (701)
.+-+.+|...|..|+|||... +|..++.+.+|+|.|+++...+..+
T Consensus 186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy--------------------------------- 232 (463)
T KOG1645|consen 186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSY--------------------------------- 232 (463)
T ss_pred hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeehe---------------------------------
Confidence 345678899999999999876 7888999999999999987544333
Q ss_pred EEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC--eEEEEECCCcEEEEECCCC
Q 005352 322 KSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLSASIDKTVRLWRVGND 385 (701)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~--~l~s~s~dg~I~iWd~~~~ 385 (701)
..| ..+++++|.-+. +++.|-.+|.|.|||++..
T Consensus 233 -----------------------------~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~ 268 (463)
T KOG1645|consen 233 -----------------------------IAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQP 268 (463)
T ss_pred -----------------------------ecc-CCceeeeeccCCcceeEEeccCceEEEEEccCC
Confidence 233 567777777765 7777777888888887543
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0053 Score=62.31 Aligned_cols=272 Identities=14% Similarity=0.105 Sum_probs=158.6
Q ss_pred ceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeC----------CCcEEEEEeecCeeeeeecCCC
Q 005352 223 QRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGD----------DGVVRLWQVVEDERLTEVDIPE 292 (701)
Q Consensus 223 ~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~----------Dg~I~iWd~~~~~~~~~~~~~~ 292 (701)
+++.|+|.++.. + .++.-.+..+ .+..+|+|+.+.++.. .-.|.+||..+.....++.++.
T Consensus 17 ~rv~viD~d~~k--~----lGmi~~g~~~---~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~ 87 (342)
T PF06433_consen 17 SRVYVIDADSGK--L----LGMIDTGFLG---NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPP 87 (342)
T ss_dssp EEEEEEETTTTE--E----EEEEEEESSE---EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETT
T ss_pred ceEEEEECCCCc--E----EEEeecccCC---ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCC
Confidence 578888865432 1 1211122222 3567999998887543 4479999999988777776554
Q ss_pred CCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEE-
Q 005352 293 IDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLS- 370 (701)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s- 370 (701)
.+.. ..-.+ ...++++.++ +++.
T Consensus 88 k~R~----------------------------------------------------~~~~~---~~~~~ls~dgk~~~V~ 112 (342)
T PF06433_consen 88 KPRA----------------------------------------------------QVVPY---KNMFALSADGKFLYVQ 112 (342)
T ss_dssp S-B------------------------------------------------------BS-----GGGEEE-TTSSEEEEE
T ss_pred cchh----------------------------------------------------eeccc---ccceEEccCCcEEEEE
Confidence 2110 00001 1123556676 3333
Q ss_pred -EECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCC-CCcEEEE----ec-CCCcE-EEE
Q 005352 371 -ASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVL-SCHVVDW----VD-IRQIV-TAV 442 (701)
Q Consensus 371 -~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~-~~~~~~~----~~-~~~~i-~~i 442 (701)
.+--..|.|-|+..++.+..+...+...-. |..+.-|.+-|.||.+.-..+. .++.... +. ...++ ..-
T Consensus 113 N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iy---P~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~ 189 (342)
T PF06433_consen 113 NFTPATSVTVVDLAAKKVVGEIDTPGCWLIY---PSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHP 189 (342)
T ss_dssp EESSSEEEEEEETTTTEEEEEEEGTSEEEEE---EEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--
T ss_pred ccCCCCeEEEEECCCCceeeeecCCCEEEEE---ecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCccccccc
Confidence 334567999999999999988876644332 3344568888999999999887 4444311 11 12222 233
Q ss_pred EEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecc----cCCCCCCeeEEEEecCCCCEEEEEEC-------CC--
Q 005352 443 CYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSK----KKAPCKRITGFQFLPQDSSKVMVSCA-------DS-- 509 (701)
Q Consensus 443 ~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~----~~~~~~~i~~l~~~p~~~~~l~~~s~-------dg-- 509 (701)
++...+..++--+.+|.|+-.|+............+... ..-..+...-+++++..+.+++.--. |+
T Consensus 190 ~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgt 269 (342)
T PF06433_consen 190 AYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGT 269 (342)
T ss_dssp EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EE
T ss_pred ceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCce
Confidence 455555566668889999999999887655544443221 11122334457777744343332211 11
Q ss_pred cEEEEeCCccceeeecccCCCCeEEEEEecCCC-EEEEE-eCCCcEEEEeCCCCC
Q 005352 510 QVRILQGPNVIGKYKGLRRSGNQLSACFTSDGK-HIVSA-GEDSNVYMWNCIGHE 562 (701)
Q Consensus 510 ~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~-~l~sg-s~Dg~I~iWd~~~~~ 562 (701)
.|.++|+.+.+...+.. ....+.++..+.+.+ +|++. ..++.+.+||..+++
T Consensus 270 eVWv~D~~t~krv~Ri~-l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk 323 (342)
T PF06433_consen 270 EVWVYDLKTHKRVARIP-LEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGK 323 (342)
T ss_dssp EEEEEETTTTEEEEEEE-EEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--
T ss_pred EEEEEECCCCeEEEEEe-CCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCc
Confidence 37777888766665553 234577899998775 66554 458999999999987
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0017 Score=69.80 Aligned_cols=182 Identities=13% Similarity=0.134 Sum_probs=97.2
Q ss_pred CeEEEEEecCCeEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecC
Q 005352 356 EILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDI 435 (701)
Q Consensus 356 ~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~ 435 (701)
.-..+.|.+.+.+++-...++|.|+.--+.+..+.+.....+..|-. |.+|+..+ ++.|.+||+.+++.+..+..
T Consensus 70 ~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~i~~~~~~~~If~----G~LL~~~~-~~~i~~yDw~~~~~i~~i~v 144 (443)
T PF04053_consen 70 SGLSFVWSSRNRYAVLESSSTIKIYKNFKNEVVKSIKLPFSVEKIFG----GNLLGVKS-SDFICFYDWETGKLIRRIDV 144 (443)
T ss_dssp E-SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT-----SS-EEEEE-----SSSEEEEE-TTEEEEE-TTT--EEEEESS
T ss_pred ceeEEEEecCccEEEEECCCeEEEEEcCccccceEEcCCcccceEEc----CcEEEEEC-CCCEEEEEhhHcceeeEEec
Confidence 44567899877888888889999974333333334544444555532 66666665 44899999999999988876
Q ss_pred CCcEEEEEEeeCCCeEEEEecCCcEEEEECCCC------------eeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEE
Q 005352 436 RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDN------------HLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVM 503 (701)
Q Consensus 436 ~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~------------~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~ 503 (701)
.. |..+.|+++|++++..+.+ .+.+++.... ......++ ...|.+.+|.. ..++
T Consensus 145 ~~-vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~---------~~~IkSg~W~~---d~fi 210 (443)
T PF04053_consen 145 SA-VKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEI---------SERIKSGCWVE---DCFI 210 (443)
T ss_dssp -E--EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE----------S--SEEEEET---TEEE
T ss_pred CC-CcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEe---------cceeEEEEEEc---CEEE
Confidence 64 8999999999999988754 6777665433 22111110 24577778865 2444
Q ss_pred EEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 005352 504 VSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIG 560 (701)
Q Consensus 504 ~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~ 560 (701)
-.+.. .|+.+-... ...+.. -..++.=+...+..+.|.....|+.|..+.++.
T Consensus 211 YtT~~-~lkYl~~Ge-~~~i~~--ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 211 YTTSN-HLKYLVNGE-TGIIAH--LDKPLYLLGYLPKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp EE-TT-EEEEEETTE-EEEEEE---SS--EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred EEcCC-eEEEEEcCC-cceEEE--cCCceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence 44444 666543222 111111 245666677788778888888999999888764
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.99 E-value=2.4e-06 Score=90.32 Aligned_cols=197 Identities=14% Similarity=0.177 Sum_probs=134.4
Q ss_pred ccCeEEEEEecCC---eEEEEECCCcEEEEECCCCeee-e--eecCCCCeEEEEEeeCCCCEEEEEEc----CCcEEEEe
Q 005352 354 SGEILDLSWSKNN---YLLSASIDKTVRLWRVGNDHCL-R--VFPHSNYVTCVHFNPVDDNYFISGSI----DGKVRIWA 423 (701)
Q Consensus 354 ~~~I~~l~~s~~~---~l~s~s~dg~I~iWd~~~~~~~-~--~~~h~~~V~~l~f~p~~~~~l~sgs~----dg~v~iwd 423 (701)
...+.|+++.-+. .++.|..+|.|.+-.++...-. . +-++..++++++|++.|.+.||+|-. |..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 3456777766543 7888999999999988765433 2 22378899999999977788888742 46799999
Q ss_pred CCCCcEE-----EEec-CCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecC
Q 005352 424 VLSCHVV-----DWVD-IRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQ 497 (701)
Q Consensus 424 ~~~~~~~-----~~~~-~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~ 497 (701)
+.++-.+ .+.. ......++||..+.+.+++|.....++++|++...... .......+.++.+.|-
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~---------~svnTk~vqG~tVdp~ 206 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSV---------SSVNTKYVQGITVDPF 206 (783)
T ss_pred cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhh---------hhhhhhhcccceecCC
Confidence 9887221 1222 33456689999888999999999999999998432110 1112234667788886
Q ss_pred CCCEEEEEECCCcEEEEe-CCccceeeecccCC-----CCeEEEEEecCC-CEEEEEe-CCCcEEEEeCCC
Q 005352 498 DSSKVMVSCADSQVRILQ-GPNVIGKYKGLRRS-----GNQLSACFTSDG-KHIVSAG-EDSNVYMWNCIG 560 (701)
Q Consensus 498 ~~~~l~~~s~dg~I~iwd-~~~~~~~~~~~~~~-----~~v~~l~~s~dg-~~l~sgs-~Dg~I~iWd~~~ 560 (701)
.++++++.. |+.|-+|| ..+....+....+. ..+..++|.|.. ..+++.. ..++|+++++..
T Consensus 207 ~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 207 SPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred CCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 667776655 99999999 44433333322222 248899999954 2445544 457899999864
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0015 Score=64.75 Aligned_cols=182 Identities=14% Similarity=0.065 Sum_probs=112.8
Q ss_pred CCCcEEEEECCCCeeeeeecCCCCeEEEE--EeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCe
Q 005352 373 IDKTVRLWRVGNDHCLRVFPHSNYVTCVH--FNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQG 450 (701)
Q Consensus 373 ~dg~I~iWd~~~~~~~~~~~h~~~V~~l~--f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~ 450 (701)
.+|+|..||..+++.+............. ..+ ++..+++++.++.|..||..+++.+-.......+...- ...+..
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~~~ 78 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPVATAVP-DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP-VVDGGR 78 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEEETEEE-ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE-EEETTE
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCccceEEE-eCCEEEEEcCCCEEEEEECCCCCEEEEeecccccccee-eecccc
Confidence 36899999999999999887422122222 222 56677777899999999999998875554443322222 334567
Q ss_pred EEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCC
Q 005352 451 GIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSG 530 (701)
Q Consensus 451 l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~ 530 (701)
+++++.++.+..+|..+++.......... ............+ .+..++++..++.|..+|..+............
T Consensus 79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~--~~~~~~~~~~~~~---~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~ 153 (238)
T PF13360_consen 79 VYVGTSDGSLYALDAKTGKVLWSIYLTSS--PPAGVRSSSSPAV---DGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEP 153 (238)
T ss_dssp EEEEETTSEEEEEETTTSCEEEEEEE-SS--CTCSTB--SEEEE---ETTEEEEEETCSEEEEEETTTTEEEEEEESSTT
T ss_pred cccccceeeeEecccCCcceeeeeccccc--cccccccccCceE---ecCEEEEEeccCcEEEEecCCCcEEEEeecCCC
Confidence 77888888999999999987654211110 0011111222233 367888888899999999887666544432221
Q ss_pred C----------eEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 531 N----------QLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 531 ~----------v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
. +..-....++ .++.++.++.+.-+|+.+++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~ 194 (238)
T PF13360_consen 154 RGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGE 194 (238)
T ss_dssp -SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTE
T ss_pred CCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCC
Confidence 1 1122222344 77777778864444888876
|
... |
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.96 E-value=4.4e-06 Score=88.37 Aligned_cols=238 Identities=15% Similarity=0.265 Sum_probs=141.7
Q ss_pred ccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEcc-CCCEEEEEeC----CCcEEEEEeecCeeeeeec
Q 005352 215 DAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSP-DGQYLASAGD----DGVVRLWQVVEDERLTEVD 289 (701)
Q Consensus 215 ~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~----Dg~I~iWd~~~~~~~~~~~ 289 (701)
-+++|..+|.|-+-..+.....- .....+|....++++|++ |...||.|-. |-.+.|||+.+.-.
T Consensus 72 IlavG~atG~I~l~s~r~~hdSs-----~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~lt----- 141 (783)
T KOG1008|consen 72 ILAVGSATGNISLLSVRHPHDSS-----AEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLT----- 141 (783)
T ss_pred hhhhccccCceEEeecCCccccc-----ceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccC-----
Confidence 34558888998888765443221 123456889999999988 5566777632 66799999977521
Q ss_pred CCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEc-CCccCeEEEEEecCC-e
Q 005352 290 IPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFH-GHSGEILDLSWSKNN-Y 367 (701)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~I~~l~~s~~~-~ 367 (701)
.+.. .+ .|. +-.....+++|-.+. .
T Consensus 142 vPke---------------------------------------------------~~--~fs~~~l~gqns~cwlrd~kl 168 (783)
T KOG1008|consen 142 VPKE---------------------------------------------------SP--LFSSSTLDGQNSVCWLRDTKL 168 (783)
T ss_pred CCcc---------------------------------------------------cc--ccccccccCccccccccCcch
Confidence 0000 00 000 122334478888777 8
Q ss_pred EEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeC-CCCc-EEEEec-----CCCcEE
Q 005352 368 LLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAV-LSCH-VVDWVD-----IRQIVT 440 (701)
Q Consensus 368 l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~-~~~~-~~~~~~-----~~~~i~ 440 (701)
+++|...+.+.++|++........-.+..+..+.+.|...+++++-. ||.|.+||. ++-+ .+.... ....+.
T Consensus 169 vlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~ 247 (783)
T KOG1008|consen 169 VLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLF 247 (783)
T ss_pred hhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCccccee
Confidence 88888888999999985433323334557888888887888888876 999999994 3221 111111 223589
Q ss_pred EEEEeeCCC--eEEEEecCCcEEEEECCCCeeeeee---eEEee-----cccCCCCCCeeEEEEecCC-CCEEEEEECCC
Q 005352 441 AVCYRPDGQ--GGIVGSMMGDCRFYNVSDNHLELDA---EICVH-----SKKKAPCKRITGFQFLPQD-SSKVMVSCADS 509 (701)
Q Consensus 441 ~i~~sp~g~--~l~~gs~dg~v~i~d~~~~~~~~~~---~~~~~-----~~~~~~~~~i~~l~~~p~~-~~~l~~~s~dg 509 (701)
.++|.|... ..+..-..++|++||+....-.... ..... -........|.++.|++.. -...+++...-
T Consensus 248 ~~aycPtrtglla~l~RdS~tIrlydi~~v~t~~s~nn~~~~~~~s~~~~q~~~~~s~I~~f~wH~~s~~er~il~~~nl 327 (783)
T KOG1008|consen 248 ALAYCPTRTGLLAVLSRDSITIRLYDICVVGTEGSANNSVFVNYESKYPVQPNSQCSGIDFFTWHTASPTERQILGVINL 327 (783)
T ss_pred eEEeccCCcchhhhhccCcceEEEecccccCCcccccccceeeecccccccccccccceeecCcCcCCccceeEEeeccC
Confidence 999999543 3333445688999998642111000 00011 1122334677788888754 33444444444
Q ss_pred cEEEEeC
Q 005352 510 QVRILQG 516 (701)
Q Consensus 510 ~I~iwd~ 516 (701)
++.-+++
T Consensus 328 ~~~Df~V 334 (783)
T KOG1008|consen 328 QPKDFSV 334 (783)
T ss_pred Chhhccc
Confidence 4444443
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0039 Score=62.51 Aligned_cols=200 Identities=12% Similarity=0.115 Sum_probs=127.2
Q ss_pred eEEEEEecCC--eEEEEECCCc-EEEEECCCCeeeeeecCC---CCeEEEEEeeCCCCEEEEEEc-----CCcEEEEeCC
Q 005352 357 ILDLSWSKNN--YLLSASIDKT-VRLWRVGNDHCLRVFPHS---NYVTCVHFNPVDDNYFISGSI-----DGKVRIWAVL 425 (701)
Q Consensus 357 I~~l~~s~~~--~l~s~s~dg~-I~iWd~~~~~~~~~~~h~---~~V~~l~f~p~~~~~l~sgs~-----dg~v~iwd~~ 425 (701)
...++.+|.. .++.+-.-|+ ..+||..+++....+... ..--.-.|++ ++++|++.-. .|.|-|||..
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~-dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSP-DGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcC-CCCEEEEeccccCCCcEEEEEEECc
Confidence 3467778855 6666766665 778999999988877521 1223567999 9999998644 4789999998
Q ss_pred -CCcEE-EEecCCCcEEEEEEeeCCCeEEEEec------------------CCcEEEEECCCCeeeeeeeEEeecccCCC
Q 005352 426 -SCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSM------------------MGDCRFYNVSDNHLELDAEICVHSKKKAP 485 (701)
Q Consensus 426 -~~~~~-~~~~~~~~i~~i~~sp~g~~l~~gs~------------------dg~v~i~d~~~~~~~~~~~~~~~~~~~~~ 485 (701)
+-+.+ .+..+.-....+.+.|||+.|+++.. +..+.+.|..++++.-...+. ...+
T Consensus 86 ~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp----~~~~ 161 (305)
T PF07433_consen 86 RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELP----PDLH 161 (305)
T ss_pred CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecC----cccc
Confidence 33444 45555556777889999988888632 233444455555543222110 1224
Q ss_pred CCCeeEEEEecCCCCEEEEEECCCc-------EEEEeCCccceeeec-----ccCCCCeEEEEEecCCCEEEEE-eCCCc
Q 005352 486 CKRITGFQFLPQDSSKVMVSCADSQ-------VRILQGPNVIGKYKG-----LRRSGNQLSACFTSDGKHIVSA-GEDSN 552 (701)
Q Consensus 486 ~~~i~~l~~~p~~~~~l~~~s~dg~-------I~iwd~~~~~~~~~~-----~~~~~~v~~l~~s~dg~~l~sg-s~Dg~ 552 (701)
...|..+++.+ ++..++..-..+. |-+++.......+.. ......+-++++++++.++++. -.-+.
T Consensus 162 ~lSiRHLa~~~-~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~ 240 (305)
T PF07433_consen 162 QLSIRHLAVDG-DGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGR 240 (305)
T ss_pred ccceeeEEecC-CCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCE
Confidence 46688888887 4444443333222 344444332222222 2245789999999999877554 46788
Q ss_pred EEEEeCCCCC
Q 005352 553 VYMWNCIGHE 562 (701)
Q Consensus 553 I~iWd~~~~~ 562 (701)
+.+||..++.
T Consensus 241 ~~~~d~~tg~ 250 (305)
T PF07433_consen 241 VAVWDAATGR 250 (305)
T ss_pred EEEEECCCCC
Confidence 9999999887
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0036 Score=66.47 Aligned_cols=278 Identities=15% Similarity=0.186 Sum_probs=140.9
Q ss_pred cEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeee-eecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCc
Q 005352 252 SILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLT-EVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSES 330 (701)
Q Consensus 252 ~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (701)
.|+.|.|+++..-||.|...|.|.||.+..++... .......+.....+..+ .. ...+.....-...
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~-----------~~-~~~l~di~~r~~~ 70 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLN-----------NS-PGKLTDISDRAPP 70 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GG-----------GS-S-SEEE-GGG--T
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCccccccccc-----------CC-CcceEEehhhCCc
Confidence 48999999998899999999999999998765322 00000000000000000 00 0011111000000
Q ss_pred cEEEcCCccccccCCCeEEEcCCccCeEEEEEecCCeEEEEECCCcEEEEECCCCeeeeeec---------CCCCeEEEE
Q 005352 331 ACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP---------HSNYVTCVH 401 (701)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~---------h~~~V~~l~ 401 (701)
. ..-.-.|...+....++|++++.|.-|+++.|..+|.+.|.|++....+..-. ....|+++.
T Consensus 71 -------~-~~~gf~P~~l~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ie 142 (395)
T PF08596_consen 71 -------S-LKEGFLPLTLLDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIE 142 (395)
T ss_dssp -------T--SEEEEEEEEE---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEE
T ss_pred -------c-cccccCchhheeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEE
Confidence 0 00000355566667899999999988899999999999999998887766532 345788998
Q ss_pred EeeC----CC---CEEEEEEcCCcEEEEeCCC---Cc----EEEEe-cCCCcEEEEE-EeeC------------------
Q 005352 402 FNPV----DD---NYFISGSIDGKVRIWAVLS---CH----VVDWV-DIRQIVTAVC-YRPD------------------ 447 (701)
Q Consensus 402 f~p~----~~---~~l~sgs~dg~v~iwd~~~---~~----~~~~~-~~~~~i~~i~-~sp~------------------ 447 (701)
|... ++ -.+++|...|.+.+|.+.- +. ..... .+.++|..|. ++.+
T Consensus 143 F~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g 222 (395)
T PF08596_consen 143 FSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKG 222 (395)
T ss_dssp EEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT
T ss_pred EEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccC
Confidence 8741 22 4688899999999998751 11 11222 4556665554 3221
Q ss_pred --CCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEe----cCCCCEEEEEECCCcEEEEeCCccce
Q 005352 448 --GQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFL----PQDSSKVMVSCADSQVRILQGPNVIG 521 (701)
Q Consensus 448 --g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~----p~~~~~l~~~s~dg~I~iwd~~~~~~ 521 (701)
-..+++...+..++++...+.+..... . ........+.+. ...+..|++-..+|.|++|.+..+..
T Consensus 223 ~~i~g~vVvvSe~~irv~~~~~~k~~~K~-------~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lke 294 (395)
T PF08596_consen 223 ISIPGYVVVVSESDIRVFKPPKSKGAHKS-------F-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKE 294 (395)
T ss_dssp ----EEEEEE-SSEEEEE-TT---EEEEE---------SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--E
T ss_pred CCcCcEEEEEcccceEEEeCCCCccccee-------e-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchH
Confidence 123555556788999998876643211 1 111122233342 12467788888999999999987655
Q ss_pred eeeccc----CCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 005352 522 KYKGLR----RSGNQLSACFTSDGKHIVSAGEDSNVYMWNC 558 (701)
Q Consensus 522 ~~~~~~----~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~ 558 (701)
.....- ....+...+++++|..++-.+. ..+.++.+
T Consensus 295 i~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gp-sE~~l~sv 334 (395)
T PF08596_consen 295 IKSVSLPPPLDSRRLSSSSISRNGDIFYWTGP-SEIQLFSV 334 (395)
T ss_dssp EEEEE-SS---HHHHTT-EE-TTS-EEEE-SS-SEEEEEEE
T ss_pred hhcccCCCccccccccccEECCCCCEEEEeCc-ccEEEEEE
Confidence 443321 1123445677888887766643 34444443
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.92 E-value=7.6e-06 Score=89.21 Aligned_cols=198 Identities=14% Similarity=0.133 Sum_probs=135.9
Q ss_pred CCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCC--cEE
Q 005352 345 KPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDG--KVR 420 (701)
Q Consensus 345 ~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg--~v~ 420 (701)
++...|+.|....+|++|+-.. +|+.|+..|.|+++++.+|....... |..+|+.+.-+. ++..+++.+.-. -..
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~-dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSV-DGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccC-CcceeeeeccccCchHH
Confidence 5567788899999999999877 99999999999999999998888777 999999999887 777776655433 467
Q ss_pred EEeCCC-CcEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCC
Q 005352 421 IWAVLS-CHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDS 499 (701)
Q Consensus 421 iwd~~~-~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~ 499 (701)
+|++.. +.....+ ..-.++.|+...+.-++|+......+||+.++......- .........-+...|+|. .
T Consensus 1171 LW~~~s~~~~~Hsf---~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tyl----t~~~~~~y~~n~a~FsP~-D 1242 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHSF---DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYL----TDTVTSSYSNNLAHFSPC-D 1242 (1516)
T ss_pred HhccccccCccccc---cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhc----CcchhhhhhccccccCCC-c
Confidence 898864 1222222 234567787766667778887889999999987543311 001111122366778884 4
Q ss_pred CEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 500 SKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 500 ~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
.+++ .|| .+||.+........-... .-..-.|+|.|..++.-++ |||+.+.+
T Consensus 1243 ~LIl---ndG--vLWDvR~~~aIh~FD~ft-~~~~G~FHP~g~eVIINSE-----IwD~RTF~ 1294 (1516)
T KOG1832|consen 1243 TLIL---NDG--VLWDVRIPEAIHRFDQFT-DYGGGGFHPSGNEVIINSE-----IWDMRTFK 1294 (1516)
T ss_pred ceEe---eCc--eeeeeccHHHHhhhhhhe-ecccccccCCCceEEeech-----hhhhHHHH
Confidence 4443 233 468887543332221111 2223459999999998775 89998866
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.92 E-value=9.6e-05 Score=80.62 Aligned_cols=147 Identities=14% Similarity=0.129 Sum_probs=108.6
Q ss_pred CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeee
Q 005352 393 HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLEL 472 (701)
Q Consensus 393 h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~ 472 (701)
....++|++++ +.+|+-|..+|.|++++..... ...+.|... ..+|.++++++.||+|.|..+-+.+...
T Consensus 38 ~~D~is~~av~---~~~~~~GtH~g~v~~~~~~~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~ 107 (846)
T KOG2066|consen 38 QNDAISCCAVH---DKFFALGTHRGAVYLTTCQGNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEIT 107 (846)
T ss_pred hhhHHHHHHhh---cceeeeccccceEEEEecCCcc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccce
Confidence 55678888885 5899999999999999886543 333344333 6689999999999999999887766543
Q ss_pred eeeEEeecccCCCCCCeeEEEEecC----CCCEEEEEECCCcEEEEeCCcc--ceeeecccCCCCeEEEEEecCCCEEEE
Q 005352 473 DAEICVHSKKKAPCKRITGFQFLPQ----DSSKVMVSCADSQVRILQGPNV--IGKYKGLRRSGNQLSACFTSDGKHIVS 546 (701)
Q Consensus 473 ~~~~~~~~~~~~~~~~i~~l~~~p~----~~~~l~~~s~dg~I~iwd~~~~--~~~~~~~~~~~~v~~l~~s~dg~~l~s 546 (701)
... -..++.+++++|+ ....+++|+..| +.++.-+-. .....++...++|.+++| .|.+||-
T Consensus 108 ~~d---------f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W--~g~lIAW 175 (846)
T KOG2066|consen 108 QYD---------FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKW--RGNLIAW 175 (846)
T ss_pred eEe---------cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEe--cCcEEEE
Confidence 222 2256889999995 457889999988 777764311 122234557789999999 5778888
Q ss_pred EeCCCcEEEEeCCCCC
Q 005352 547 AGEDSNVYMWNCIGHE 562 (701)
Q Consensus 547 gs~Dg~I~iWd~~~~~ 562 (701)
++.+| |++||+...+
T Consensus 176 and~G-v~vyd~~~~~ 190 (846)
T KOG2066|consen 176 ANDDG-VKVYDTPTRQ 190 (846)
T ss_pred ecCCC-cEEEeccccc
Confidence 88776 9999998876
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0024 Score=68.14 Aligned_cols=90 Identities=18% Similarity=0.359 Sum_probs=72.8
Q ss_pred EEEECCCCee----eeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEE
Q 005352 378 RLWRVGNDHC----LRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIV 453 (701)
Q Consensus 378 ~iWd~~~~~~----~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~ 453 (701)
.+|++...+. +..+..+..|.|++++| +...|+.|+.||.|.+||...+.. ......-.++.++|+|+|..+++
T Consensus 239 ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSiiLyD~~~~~t-~~~ka~~~P~~iaWHp~gai~~V 316 (545)
T PF11768_consen 239 CIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSIILYDTTRGVT-LLAKAEFIPTLIAWHPDGAIFVV 316 (545)
T ss_pred EEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeEEEEEcCCCee-eeeeecccceEEEEcCCCcEEEE
Confidence 4566554432 23345889999999999 999999999999999999977643 34455677899999999999999
Q ss_pred EecCCcEEEEECCCCe
Q 005352 454 GSMMGDCRFYNVSDNH 469 (701)
Q Consensus 454 gs~dg~v~i~d~~~~~ 469 (701)
|+..|.+.+||+.-+.
T Consensus 317 ~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 317 GSEQGELQCFDMALSP 332 (545)
T ss_pred EcCCceEEEEEeecCc
Confidence 9999999999987543
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00016 Score=78.83 Aligned_cols=107 Identities=12% Similarity=0.115 Sum_probs=86.5
Q ss_pred EEEEEecCC-eEEEEE----CCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEE-
Q 005352 358 LDLSWSKNN-YLLSAS----IDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD- 431 (701)
Q Consensus 358 ~~l~~s~~~-~l~s~s----~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~- 431 (701)
+-+.|+|.. +|+.++ ..|.|.|| ..+|++......+-.+++++|+| ..-.|+.|-.-|.+.+|...+.+...
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIf-adtGEPqr~Vt~P~hatSLCWHp-e~~vLa~gwe~g~~~v~~~~~~e~htv 96 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIF-ADTGEPQRDVTYPVHATSLCWHP-EEFVLAQGWEMGVSDVQKTNTTETHTV 96 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEE-ecCCCCCcccccceehhhhccCh-HHHHHhhccccceeEEEecCCceeeee
Confidence 345788988 776665 35788888 35666665555556678899999 88888899889999999988776654
Q ss_pred EecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECC
Q 005352 432 WVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVS 466 (701)
Q Consensus 432 ~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~ 466 (701)
...|+.+|..+.|+|+|..++++..-|.+.+|...
T Consensus 97 ~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 97 VETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 44688999999999999999999999999999876
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0046 Score=60.98 Aligned_cols=205 Identities=13% Similarity=0.175 Sum_probs=116.7
Q ss_pred EEcCCccCeEEEEEecCC--eEEEEECCCcEEEEECCCCeeeeeec--CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeC
Q 005352 349 EFHGHSGEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAV 424 (701)
Q Consensus 349 ~~~~h~~~I~~l~~s~~~--~l~s~s~dg~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~ 424 (701)
.+.+-...+..|+|.|+. +++.....+.|...+. +++.++.+. ..+..-.|++.- ++.++++--.++.+.++++
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g-~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLG-NGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-S-TTEEEEEETTTTEEEEEEE
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEEC-CCEEEEEEcCCCcEEEEEE
Confidence 445666779999999975 6666667788888886 577887776 335678888875 5655555445888999988
Q ss_pred CCCc----EE--EEe------cCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCC--Ce-eeeeeeEEeecccCCCCCCe
Q 005352 425 LSCH----VV--DWV------DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSD--NH-LELDAEICVHSKKKAPCKRI 489 (701)
Q Consensus 425 ~~~~----~~--~~~------~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~--~~-~~~~~~~~~~~~~~~~~~~i 489 (701)
.... .. ..+ ..+..+-.++|+|.++.|+++-...-..+|.+.. .. ...................+
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 173 (248)
T PF06977_consen 94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDL 173 (248)
T ss_dssp ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS--
T ss_pred eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccc
Confidence 3321 11 111 1345589999999999888888877777887764 11 11100000011123344668
Q ss_pred eEEEEecCCCCEEEEEECCCcEEEEeCCcc-ceeeeccc-------CCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 005352 490 TGFQFLPQDSSKVMVSCADSQVRILQGPNV-IGKYKGLR-------RSGNQLSACFTSDGKHIVSAGEDSNVYMW 556 (701)
Q Consensus 490 ~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~-~~~~~~~~-------~~~~v~~l~~s~dg~~l~sgs~Dg~I~iW 556 (701)
.++++.|..+.+++.+.....|.++|.... ...+.... .-...-.++|.++|++.+ .++-+..+++
T Consensus 174 S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI-vsEpNlfy~f 247 (248)
T PF06977_consen 174 SGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYI-VSEPNLFYRF 247 (248)
T ss_dssp -EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEE-EETTTEEEEE
T ss_pred cceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEE-EcCCceEEEe
Confidence 999999988888888888899999996533 22233221 113467899999996444 4566666665
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.016 Score=55.53 Aligned_cols=105 Identities=12% Similarity=0.028 Sum_probs=84.2
Q ss_pred eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcEE-EEEEe
Q 005352 367 YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVT-AVCYR 445 (701)
Q Consensus 367 ~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~-~i~~s 445 (701)
+++.|+..+.+.--|..+++....-.....+.+-+.- -+++++.|+..|.+++.+..++.....+...+.|. .....
T Consensus 25 ~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v--vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d 102 (354)
T KOG4649|consen 25 LVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV--VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCD 102 (354)
T ss_pred EEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE--ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEc
Confidence 8899999999999999999988877666777776665 46789999999999999999996664443333333 34567
Q ss_pred eCCCeEEEEecCCcEEEEECCCCeeeee
Q 005352 446 PDGQGGIVGSMMGDCRFYNVSDNHLELD 473 (701)
Q Consensus 446 p~g~~l~~gs~dg~v~i~d~~~~~~~~~ 473 (701)
+++..+.+|+.|++.+..|..+......
T Consensus 103 ~~~glIycgshd~~~yalD~~~~~cVyk 130 (354)
T KOG4649|consen 103 FDGGLIYCGSHDGNFYALDPKTYGCVYK 130 (354)
T ss_pred CCCceEEEecCCCcEEEecccccceEEe
Confidence 8999999999999999999998776543
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00065 Score=72.37 Aligned_cols=95 Identities=13% Similarity=0.154 Sum_probs=73.0
Q ss_pred EEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEec
Q 005352 460 CRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTS 539 (701)
Q Consensus 460 v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~ 539 (701)
-.+|++..+++...... .......+.+++++| +...++.|+.||.|.+||.......+.. ..-.++.++|+|
T Consensus 238 ~ciYE~~r~klqrvsvt-----sipL~s~v~~ca~sp-~E~kLvlGC~DgSiiLyD~~~~~t~~~k--a~~~P~~iaWHp 309 (545)
T PF11768_consen 238 SCIYECSRNKLQRVSVT-----SIPLPSQVICCARSP-SEDKLVLGCEDGSIILYDTTRGVTLLAK--AEFIPTLIAWHP 309 (545)
T ss_pred EEEEEeecCceeEEEEE-----EEecCCcceEEecCc-ccceEEEEecCCeEEEEEcCCCeeeeee--ecccceEEEEcC
Confidence 35777776655432211 223446799999999 7899999999999999998766555442 456678999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCC
Q 005352 540 DGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 540 dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
+|.++++|+..|.+.+||+.-..
T Consensus 310 ~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 310 DGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred CCcEEEEEcCCceEEEEEeecCc
Confidence 99999999999999999986543
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0028 Score=72.66 Aligned_cols=200 Identities=16% Similarity=0.173 Sum_probs=125.2
Q ss_pred CCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecC
Q 005352 249 HDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTS 328 (701)
Q Consensus 249 H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (701)
..+.|.++.|..++.-++.+..+|.|.+-|.++....
T Consensus 67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e------------------------------------------- 103 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLELE------------------------------------------- 103 (1265)
T ss_pred CCcceEEEEEecccceEEEEecCCcEEEEccccccee-------------------------------------------
Confidence 3468999999999998999999999999887665310
Q ss_pred CccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEEC----CCCeee---------------
Q 005352 329 ESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRV----GNDHCL--------------- 388 (701)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~----~~~~~~--------------- 388 (701)
....-...|.+++|+|+. .++..+..+++.+-.- -..+.+
T Consensus 104 --------------------ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGw 163 (1265)
T KOG1920|consen 104 --------------------IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGW 163 (1265)
T ss_pred --------------------eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecc
Confidence 111134678899999998 6666666666655322 111111
Q ss_pred ----eeec----------------------CCCCeEEEEEeeCCCCEEEEEE----cC-CcEEEEeCCCCcEEE-EecCC
Q 005352 389 ----RVFP----------------------HSNYVTCVHFNPVDDNYFISGS----ID-GKVRIWAVLSCHVVD-WVDIR 436 (701)
Q Consensus 389 ----~~~~----------------------h~~~V~~l~f~p~~~~~l~sgs----~d-g~v~iwd~~~~~~~~-~~~~~ 436 (701)
..|. ..+.=+.|.|-- ++.+|++.. .+ ..|+|||.. +.+-. .....
T Consensus 164 GrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRg-Dg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~ 241 (1265)
T KOG1920|consen 164 GRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRG-DGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVE 241 (1265)
T ss_pred cccceeeecchhhhcccccccccccccchhhccCCceEEEcc-CCcEEEEEEEeccCCceeEEEeccc-chhhcccCccc
Confidence 0110 011123478877 888998832 23 789999987 43322 22233
Q ss_pred CcEEEEEEeeCCCeEEEE---ecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEE---EECCCc
Q 005352 437 QIVTAVCYRPDGQGGIVG---SMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMV---SCADSQ 510 (701)
Q Consensus 437 ~~i~~i~~sp~g~~l~~g---s~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~---~s~dg~ 510 (701)
+.-.+++|-|.|..+++- +.++.|.+|.-+.-..- . +.+ ........+..++|+. ++..|++ ......
T Consensus 242 ~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg-~--f~l--~~p~de~~ve~L~Wns-~sdiLAv~~~~~e~~~ 315 (1265)
T KOG1920|consen 242 GLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHG-E--FVL--PFPLDEKEVEELAWNS-NSDILAVVTSNLENSL 315 (1265)
T ss_pred ccccceeecCCCCeEeeeeecCCCCcEEEEecCCcccc-c--ccc--CCcccccchheeeecC-CCCceeeeecccccce
Confidence 455689999999988875 34567888876542210 0 000 0111123389999999 6777777 444566
Q ss_pred EEEEeCCcc
Q 005352 511 VRILQGPNV 519 (701)
Q Consensus 511 I~iwd~~~~ 519 (701)
|++|-..+.
T Consensus 316 v~lwt~~Ny 324 (1265)
T KOG1920|consen 316 VQLWTTGNY 324 (1265)
T ss_pred EEEEEecCe
Confidence 999998753
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0014 Score=75.07 Aligned_cols=197 Identities=13% Similarity=0.112 Sum_probs=134.8
Q ss_pred ccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeC----CC--
Q 005352 354 SGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAV----LS-- 426 (701)
Q Consensus 354 ~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~----~~-- 426 (701)
.+.|.++.|..+. .++.+...|.|.+-|..+......-.-.+.|.+++|+| |+..++..+..+++.+-+- -.
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~-Dee~l~liT~~~tll~mT~~f~~i~E~ 146 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSP-DEELLALITGRQTLLFMTKDFEPIAEK 146 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecC-CCcEEEEEeCCcEEEEEeccccchhcc
Confidence 3689999999888 88888889999999988876655555678899999999 9999998888777766432 00
Q ss_pred ---------CcEE---------EEec---------------------CCCcEEEEEEeeCCCeEEEE-----ecCCcEEE
Q 005352 427 ---------CHVV---------DWVD---------------------IRQIVTAVCYRPDGQGGIVG-----SMMGDCRF 462 (701)
Q Consensus 427 ---------~~~~---------~~~~---------------------~~~~i~~i~~sp~g~~l~~g-----s~dg~v~i 462 (701)
++.+ ++.+ ....=++|+|--||+++++. .....+++
T Consensus 147 ~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV 226 (1265)
T KOG1920|consen 147 PLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRV 226 (1265)
T ss_pred ccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEE
Confidence 0101 0110 11123459999999999983 33378999
Q ss_pred EECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEE---CCCcEEEEeCCcccee---eecccCCCCeEEEE
Q 005352 463 YNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSC---ADSQVRILQGPNVIGK---YKGLRRSGNQLSAC 536 (701)
Q Consensus 463 ~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s---~dg~I~iwd~~~~~~~---~~~~~~~~~v~~l~ 536 (701)
||-+ +.+.. ........-.+++|-| .+..+++.. .|+.|.+|.-+...+- .........+..++
T Consensus 227 ~drE-g~Lns--------~se~~~~l~~~LsWkP-sgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~ 296 (1265)
T KOG1920|consen 227 YDRE-GALNS--------TSEPVEGLQHSLSWKP-SGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELA 296 (1265)
T ss_pred eccc-chhhc--------ccCcccccccceeecC-CCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheee
Confidence 9987 33221 1222233446789999 677777654 3678999986543322 22222344589999
Q ss_pred EecCCCEEEE---EeCCCcEEEEeCCCC
Q 005352 537 FTSDGKHIVS---AGEDSNVYMWNCIGH 561 (701)
Q Consensus 537 ~s~dg~~l~s---gs~Dg~I~iWd~~~~ 561 (701)
|+.++..|++ ......|++|-+.+-
T Consensus 297 Wns~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 297 WNSNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred ecCCCCceeeeecccccceEEEEEecCe
Confidence 9999999987 555666999987764
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0019 Score=69.98 Aligned_cols=156 Identities=17% Similarity=0.171 Sum_probs=103.4
Q ss_pred ceeeecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeee
Q 005352 206 GERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERL 285 (701)
Q Consensus 206 ~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~ 285 (701)
-++++..+++++.|+..|.+.+|...... .... ...+-.+.+..+..+++..++|.|+..|.|.++.++....
T Consensus 38 lTc~dst~~~l~~GsS~G~lyl~~R~~~~--~~~~----~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p- 110 (726)
T KOG3621|consen 38 LTCVDATEEYLAMGSSAGSVYLYNRHTGE--MRKL----KNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELP- 110 (726)
T ss_pred EEEeecCCceEEEecccceEEEEecCchh--hhcc----cccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCC-
Confidence 36778888999999999999999754321 1111 1222456677788899988899999999999998876431
Q ss_pred eeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecC
Q 005352 286 TEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN 365 (701)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~ 365 (701)
+..+++.. .-+.|+..|++++|+++
T Consensus 111 ---------~~~~~~t~----------------------------------------------~d~~~~~rVTal~Ws~~ 135 (726)
T KOG3621|consen 111 ---------RDLDYVTP----------------------------------------------CDKSHKCRVTALEWSKN 135 (726)
T ss_pred ---------Ccceeecc----------------------------------------------ccccCCceEEEEEeccc
Confidence 11111110 00238899999999999
Q ss_pred C-eEEEEECCCcEEEEECCCC-----eeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCC
Q 005352 366 N-YLLSASIDKTVRLWRVGND-----HCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSC 427 (701)
Q Consensus 366 ~-~l~s~s~dg~I~iWd~~~~-----~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~ 427 (701)
+ .+++|...|+|.+-.+.+. .....+...+.|-.+... ...+|++...- -.++++..+
T Consensus 136 ~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~--q~~LLVStl~r--~~Lc~tE~e 199 (726)
T KOG3621|consen 136 GMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL--QSYLLVSTLTR--CILCQTEAE 199 (726)
T ss_pred ccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc--cceehHhhhhh--hheeecchh
Confidence 9 9999999999999888772 111222356778777775 34444444332 334555443
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0017 Score=71.81 Aligned_cols=197 Identities=15% Similarity=0.137 Sum_probs=125.4
Q ss_pred CeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCC-eEEEEEeeCCCCEEEEEEcCC-----cEEEEeCCCC
Q 005352 356 EILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNY-VTCVHFNPVDDNYFISGSIDG-----KVRIWAVLSC 427 (701)
Q Consensus 356 ~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~-V~~l~f~p~~~~~l~sgs~dg-----~v~iwd~~~~ 427 (701)
.|.+ |++++ .++.|+.+|.|.+.+- +.+.+..|+ +... |+.+.... ..++|++.+.|+ .|+||++...
T Consensus 27 ~isc--~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~-~~~~L~sv~Ed~~~np~llkiw~lek~ 102 (933)
T KOG2114|consen 27 AISC--CSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILN-KQNFLFSVGEDEQGNPVLLKIWDLEKV 102 (933)
T ss_pred ceeE--EcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhccc-CceEEEEEeecCCCCceEEEEeccccc
Confidence 4443 46666 9999999999888873 333334444 3333 55554433 446888877765 4899998642
Q ss_pred ------cEE---EEec-----CCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEE
Q 005352 428 ------HVV---DWVD-----IRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQ 493 (701)
Q Consensus 428 ------~~~---~~~~-----~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 493 (701)
+++ .... ...++.+++.+.+-+.+++|-.+|.|..|.-+-.+- ..... ........+|+++.
T Consensus 103 ~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RD---rgsr~-~~~~~~~~pITgL~ 178 (933)
T KOG2114|consen 103 DKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRD---RGSRQ-DYSHRGKEPITGLA 178 (933)
T ss_pred CCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhc---cccce-eeeccCCCCceeeE
Confidence 233 2232 246788999999999999999999999886331111 00000 01223447899999
Q ss_pred EecCCCCEEEEEECCCcEEEEeCCccceeee-cccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 494 FLPQDSSKVMVSCADSQVRILQGPNVIGKYK-GLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 494 ~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~-~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
+.. ++..++.......|.+|.+........ ...+..++.|.++++....+++|+ +..+++|+.....
T Consensus 179 ~~~-d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~ 246 (933)
T KOG2114|consen 179 LRS-DGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRG 246 (933)
T ss_pred Eec-CCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcc
Confidence 988 455534444556788888764332333 334677888888887665455554 3579999977544
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.013 Score=62.28 Aligned_cols=204 Identities=15% Similarity=0.206 Sum_probs=118.7
Q ss_pred CeEEEEEecCC-eEEEEECCCcEEEEECCCCeee-------------------------------------------eee
Q 005352 356 EILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCL-------------------------------------------RVF 391 (701)
Q Consensus 356 ~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~-------------------------------------------~~~ 391 (701)
.|+.+.+.++. .|+.+...|.|.||.....+.- ..+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 57888999887 9999999999988865321110 001
Q ss_pred c-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecC---------CCcEEEEEEee-----CC---CeEEE
Q 005352 392 P-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDI---------RQIVTAVCYRP-----DG---QGGIV 453 (701)
Q Consensus 392 ~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~---------~~~i~~i~~sp-----~g---~~l~~ 453 (701)
. ..++|++++.+ +-.+++.|+.+|.+.|.|+|...++..... ...++++.|.. |+ -.+++
T Consensus 83 ~~~~g~vtal~~S--~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v 160 (395)
T PF08596_consen 83 DAKQGPVTALKNS--DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV 160 (395)
T ss_dssp ---S-SEEEEEE---BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred eccCCcEeEEecC--CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence 1 46789999987 567999999999999999998887744322 23588888874 22 46899
Q ss_pred EecCCcEEEEECCC-CeeeeeeeEEeecccCCCCCCeeEEEEe-cC-------------------CCCEEEEEECCCcEE
Q 005352 454 GSMMGDCRFYNVSD-NHLELDAEICVHSKKKAPCKRITGFQFL-PQ-------------------DSSKVMVSCADSQVR 512 (701)
Q Consensus 454 gs~dg~v~i~d~~~-~~~~~~~~~~~~~~~~~~~~~i~~l~~~-p~-------------------~~~~l~~~s~dg~I~ 512 (701)
|+..|.+.+|.+.- ..-.....+.... ..+..+|..+... .+ .-.-+++...+..++
T Consensus 161 GTn~G~v~~fkIlp~~~g~f~v~~~~~~--~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~ir 238 (395)
T PF08596_consen 161 GTNSGNVLTFKILPSSNGRFSVQFAGAT--TNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIR 238 (395)
T ss_dssp EETTSEEEEEEEEE-GGG-EEEEEEEEE----SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEE
T ss_pred EeCCCCEEEEEEecCCCCceEEEEeecc--ccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceE
Confidence 99999999998752 1111111111111 2233444444322 11 112355666688999
Q ss_pred EEeCCccceeeecccCCCCeEEEEEe-----cCCCEEEEEeCCCcEEEEeCCCCCC
Q 005352 513 ILQGPNVIGKYKGLRRSGNQLSACFT-----SDGKHIVSAGEDSNVYMWNCIGHEE 563 (701)
Q Consensus 513 iwd~~~~~~~~~~~~~~~~v~~l~~s-----~dg~~l~sgs~Dg~I~iWd~~~~~~ 563 (701)
++...+.+...+..........+++- ..+..|++-..+|.|++|.+-.-++
T Consensus 239 v~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lke 294 (395)
T PF08596_consen 239 VFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKE 294 (395)
T ss_dssp EE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--E
T ss_pred EEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchH
Confidence 99988766655554222233344452 3567888889999999999877653
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0016 Score=71.50 Aligned_cols=268 Identities=13% Similarity=0.088 Sum_probs=145.8
Q ss_pred eeeecCccccccc----cccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecC
Q 005352 207 ERVRLNEEDAMFC----SKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVED 282 (701)
Q Consensus 207 ~~~~~~~~~~~~~----~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~ 282 (701)
.+.++....++++ ...|.|.||--.. +.. ...++.-| +++++|+|..-.||.|-.-|.+.+|...+.
T Consensus 21 ~SWHPsePlfAVA~fS~er~GSVtIfadtG---EPq---r~Vt~P~h---atSLCWHpe~~vLa~gwe~g~~~v~~~~~~ 91 (1416)
T KOG3617|consen 21 SSWHPSEPLFAVASFSPERGGSVTIFADTG---EPQ---RDVTYPVH---ATSLCWHPEEFVLAQGWEMGVSDVQKTNTT 91 (1416)
T ss_pred cccCCCCceeEEEEecCCCCceEEEEecCC---CCC---ccccccee---hhhhccChHHHHHhhccccceeEEEecCCc
Confidence 3444555555443 3567888885211 111 11122223 456999999888999999999999997664
Q ss_pred eeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEE
Q 005352 283 ERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSW 362 (701)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~ 362 (701)
+. ......|+.+|..+.|
T Consensus 92 e~--------------------------------------------------------------htv~~th~a~i~~l~w 109 (1416)
T KOG3617|consen 92 ET--------------------------------------------------------------HTVVETHPAPIQGLDW 109 (1416)
T ss_pred ee--------------------------------------------------------------eeeccCCCCCceeEEe
Confidence 31 1122459999999999
Q ss_pred ecCC-eEEEEECCCcEEEEECCCCeeeee---ecC--CCCeEEEE------------------------------E----
Q 005352 363 SKNN-YLLSASIDKTVRLWRVGNDHCLRV---FPH--SNYVTCVH------------------------------F---- 402 (701)
Q Consensus 363 s~~~-~l~s~s~dg~I~iWd~~~~~~~~~---~~h--~~~V~~l~------------------------------f---- 402 (701)
|++| .++|+..-|.|.+|....-..++. ++| ...++-++ |
T Consensus 110 S~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~ 189 (1416)
T KOG3617|consen 110 SHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESL 189 (1416)
T ss_pred cCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccch
Confidence 9999 999999999999997652211111 111 01111111 1
Q ss_pred ---------eeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCC-Ceeee
Q 005352 403 ---------NPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSD-NHLEL 472 (701)
Q Consensus 403 ---------~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~-~~~~~ 472 (701)
.| ++..|+.++.+|+|+-.|-. ++........+.| .+-|.+....+++-..+-++.+|-+.. +....
T Consensus 190 a~rs~~ksgv~-~g~~F~~~~~~GtVyyvdq~-g~~~~V~k~dS~v-QmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee 266 (1416)
T KOG3617|consen 190 AERSDEKSGVP-KGTEFLFAGKSGTVYYVDQN-GRQRTVHKLDSEV-QMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEE 266 (1416)
T ss_pred hhccccccCCC-CCcEEEEEcCCceEEEEcCC-CcEEEEEEccchH-HHHHhcccceEEEEeeeceeeEEEecCCCchHH
Confidence 12 56677778888888777643 3333222222211 122222222233322222222222211 10000
Q ss_pred eeeEEe-----------------------ecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCC-cc------cee
Q 005352 473 DAEICV-----------------------HSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP-NV------IGK 522 (701)
Q Consensus 473 ~~~~~~-----------------------~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~-~~------~~~ 522 (701)
.-...+ ..........+++++++. .+..+..|...|.+.+|--. .. +..
T Consensus 267 ~~~vk~sgk~GgrqGgiA~sEssGvLr~~eKyg~e~ge~~~c~cY~~-~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~ 345 (1416)
T KOG3617|consen 267 RCAVKVSGKLGGRQGGIACSESSGVLRKSEKYGLELGEGILCMCYGE-KEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDV 345 (1416)
T ss_pred hhhhhhccccCCccCccccccccccccCCcchhhhcCCceEEEEEec-cceEEEecccCCcEEEeeecCccccCCCCcce
Confidence 000000 000112345789999998 67889999999999999532 11 111
Q ss_pred eec---ccCCCCeEEEEEecCCCEEEEEeC
Q 005352 523 YKG---LRRSGNQLSACFTSDGKHIVSAGE 549 (701)
Q Consensus 523 ~~~---~~~~~~v~~l~~s~dg~~l~sgs~ 549 (701)
... ....+.|..+.|.|-...++.-+.
T Consensus 346 w~l~~~~e~~g~I~~i~Wg~~k~~~avn~~ 375 (1416)
T KOG3617|consen 346 WTLNGKRESLGKISLIRWGPIKSTAAVNTE 375 (1416)
T ss_pred EEecCchhhccceEEEEeccccchhhhhhh
Confidence 111 124567899999886655555443
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.031 Score=56.84 Aligned_cols=194 Identities=11% Similarity=0.109 Sum_probs=107.5
Q ss_pred CeEEEEEecCC-eEEEEECCCcEEEEECCCCeeee---------------eecCCCCeEEEE-EeeCCCCEEEEEEcCCc
Q 005352 356 EILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLR---------------VFPHSNYVTCVH-FNPVDDNYFISGSIDGK 418 (701)
Q Consensus 356 ~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~---------------~~~h~~~V~~l~-f~p~~~~~l~sgs~dg~ 418 (701)
.|..+...++- .|++- .|+.+.++++..-.... .+.....+...+ -....+...+.......
T Consensus 37 ~I~ql~vl~~~~~llvL-sd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~ 115 (275)
T PF00780_consen 37 SITQLSVLPELNLLLVL-SDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKK 115 (275)
T ss_pred eEEEEEEecccCEEEEE-cCCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCE
Confidence 38888888875 44333 35999999987654443 222334455444 11213444444455668
Q ss_pred EEEEeCCCC-----cEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeec----ccCCCCCCe
Q 005352 419 VRIWAVLSC-----HVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHS----KKKAPCKRI 489 (701)
Q Consensus 419 v~iwd~~~~-----~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~----~~~~~~~~i 489 (701)
|.+|..... +....+.....+..++|. ++.+++|.. ....+.|+.++....-....... .......++
T Consensus 116 i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~-~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 192 (275)
T PF00780_consen 116 ILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTS-KGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPL 192 (275)
T ss_pred EEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeC-CceEEEecCCCCceEEeCccCCcchhhhcccCCCce
Confidence 988877653 344566778899999998 557888775 44888899865543211100000 011122333
Q ss_pred eEEEEecCCCCEEEEEECCCcEEEEeCCcc-c--eeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCC
Q 005352 490 TGFQFLPQDSSKVMVSCADSQVRILQGPNV-I--GKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEE 563 (701)
Q Consensus 490 ~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~-~--~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~ 563 (701)
..+... ++.+|++ . +..-.+.|.... . ..+.. ...+.++++ ...||+..+.+ .|.||++.+++.
T Consensus 193 ~~~~~~--~~e~Ll~-~-~~~g~fv~~~G~~~r~~~i~W---~~~p~~~~~--~~pyli~~~~~-~iEV~~~~~~~l 259 (275)
T PF00780_consen 193 GIFQLS--DNEFLLC-Y-DNIGVFVNKNGEPSRKSTIQW---SSAPQSVAY--SSPYLIAFSSN-SIEVRSLETGEL 259 (275)
T ss_pred EEEEeC--CceEEEE-e-cceEEEEcCCCCcCcccEEEc---CCchhEEEE--ECCEEEEECCC-EEEEEECcCCcE
Confidence 333433 2345543 2 333333343321 1 11221 234556666 34588887765 499999999974
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.022 Score=59.52 Aligned_cols=170 Identities=10% Similarity=0.144 Sum_probs=102.6
Q ss_pred CcEEEEECCCC-----e--eeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCc-EEEEecCCC--cEEEEEE
Q 005352 375 KTVRLWRVGND-----H--CLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH-VVDWVDIRQ--IVTAVCY 444 (701)
Q Consensus 375 g~I~iWd~~~~-----~--~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~-~~~~~~~~~--~i~~i~~ 444 (701)
|.|.++++... + .+......++|++++-- ++ .|+++. ++.|.+|++...+ ......... .++++..
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~--~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~ 137 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF--NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV 137 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE--TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh--CC-EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEec
Confidence 88999999884 2 22333478899999865 34 455544 6889999998887 664444333 4555544
Q ss_pred eeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCcc-----
Q 005352 445 RPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV----- 519 (701)
Q Consensus 445 sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~----- 519 (701)
.++++++|.....+.++..+.....+ .... .......++++.+.+++ +.++++..+|.+.++.....
T Consensus 138 --~~~~I~vgD~~~sv~~~~~~~~~~~l----~~va-~d~~~~~v~~~~~l~d~-~~~i~~D~~gnl~~l~~~~~~~~~~ 209 (321)
T PF03178_consen 138 --FKNYILVGDAMKSVSLLRYDEENNKL----ILVA-RDYQPRWVTAAEFLVDE-DTIIVGDKDGNLFVLRYNPEIPNSR 209 (321)
T ss_dssp --ETTEEEEEESSSSEEEEEEETTTE-E----EEEE-EESS-BEEEEEEEE-SS-SEEEEEETTSEEEEEEE-SS-SSTT
T ss_pred --cccEEEEEEcccCEEEEEEEccCCEE----EEEE-ecCCCccEEEEEEecCC-cEEEEEcCCCeEEEEEECCCCcccc
Confidence 46699999998999888655422111 1111 12234568899999744 69999999999999876421
Q ss_pred -----ceeeecccCCCCeEEE---EEec--CCC------EEEEEeCCCcEEEE
Q 005352 520 -----IGKYKGLRRSGNQLSA---CFTS--DGK------HIVSAGEDSNVYMW 556 (701)
Q Consensus 520 -----~~~~~~~~~~~~v~~l---~~s~--dg~------~l~sgs~Dg~I~iW 556 (701)
............|+++ ++.| .+. .++-++.+|.|.+.
T Consensus 210 ~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 210 DGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp TTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred cccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 1111112244567777 4445 222 47888889998854
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00082 Score=72.65 Aligned_cols=112 Identities=13% Similarity=0.119 Sum_probs=84.7
Q ss_pred cCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec--CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEE-
Q 005352 355 GEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV- 430 (701)
Q Consensus 355 ~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~- 430 (701)
..|.--++...+ +++.|+.-|.+++|+-..++....-. ..+.+..+..++ +..++|.|+..|.|.++-+.....-
T Consensus 34 ~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~-~e~lvAagt~~g~V~v~ql~~~~p~~ 112 (726)
T KOG3621|consen 34 ARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSS-VEYLVAAGTASGRVSVFQLNKELPRD 112 (726)
T ss_pred ceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecc-hhHhhhhhcCCceEEeehhhccCCCc
Confidence 344444455555 99999999999999987776554333 344555667777 8888999999999999988764321
Q ss_pred --EE----ecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCC
Q 005352 431 --DW----VDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSD 467 (701)
Q Consensus 431 --~~----~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~ 467 (701)
.. ..|...|++++|++++..+++|...|+|.+-.+..
T Consensus 113 ~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 113 LDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 11 12567899999999999999999999999888876
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.012 Score=63.24 Aligned_cols=190 Identities=14% Similarity=0.171 Sum_probs=115.1
Q ss_pred EEEcCCccCeEEEEEecCC-eEEEE---ECC-CcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEE-EEcCCc--E
Q 005352 348 HEFHGHSGEILDLSWSKNN-YLLSA---SID-KTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFIS-GSIDGK--V 419 (701)
Q Consensus 348 ~~~~~h~~~I~~l~~s~~~-~l~s~---s~d-g~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~s-gs~dg~--v 419 (701)
..+..-...+..-+|+|++ .++.. ... ..+.++++.+++........+.-..-+|+| +++.|+. ...||. |
T Consensus 186 ~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fsp-DG~~l~f~~~rdg~~~i 264 (425)
T COG0823 186 QKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSP-DGSKLAFSSSRDGSPDI 264 (425)
T ss_pred eEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCC-CCCEEEEEECCCCCccE
Confidence 3344445567777899988 32221 222 459999999998877777666667788999 7776654 445665 6
Q ss_pred EEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEec-CCc--EEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEec
Q 005352 420 RIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSM-MGD--CRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLP 496 (701)
Q Consensus 420 ~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~-dg~--v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p 496 (701)
.++|+.+++...+....+.-+.-.|+|||+.++-.+. .|. |.+++........ +.... ..-..-.|+|
T Consensus 265 y~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~r---iT~~~------~~~~~p~~Sp 335 (425)
T COG0823 265 YLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTR---LTFSG------GGNSNPVWSP 335 (425)
T ss_pred EEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeE---eeccC------CCCcCccCCC
Confidence 6678888876665555555557789999998877654 444 6666666554311 11111 1111556788
Q ss_pred CCCCEEEEEEC-CCc--EEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeC
Q 005352 497 QDSSKVMVSCA-DSQ--VRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGE 549 (701)
Q Consensus 497 ~~~~~l~~~s~-dg~--I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~ 549 (701)
++.+++..+. +|. |.+.|..+... ............-+|.++|+.|+..+.
T Consensus 336 -dG~~i~~~~~~~g~~~i~~~~~~~~~~-~~~lt~~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 336 -DGDKIVFESSSGGQWDIDKNDLASGGK-IRILTSTYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred -CCCEEEEEeccCCceeeEEeccCCCCc-EEEccccccCCCCCcCCCCceEEEecc
Confidence 5666655553 455 55555543332 222223344455677888887765543
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.049 Score=56.82 Aligned_cols=173 Identities=17% Similarity=0.227 Sum_probs=111.8
Q ss_pred CcEEEEECCCCeeeeeec--CCCCeEEEEEeeCC------CCEEEEEEc----------CCcEEEEeCCCC-----c--E
Q 005352 375 KTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVD------DNYFISGSI----------DGKVRIWAVLSC-----H--V 429 (701)
Q Consensus 375 g~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~~------~~~l~sgs~----------dg~v~iwd~~~~-----~--~ 429 (701)
..|++.|..+.+.+..+. ....+++++..... ..+|+.|.. .|.|.++++... + .
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 358889988888777665 44556665544312 467777653 288999999884 2 2
Q ss_pred EEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCe-eeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECC
Q 005352 430 VDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNH-LELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD 508 (701)
Q Consensus 430 ~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~d 508 (701)
+.....+++|++++-- ++ .|+++. .+.|.+|++...+ +....... ....++++.... +++++|...
T Consensus 82 i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~-------~~~~i~sl~~~~---~~I~vgD~~ 148 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYD-------SPFYITSLSVFK---NYILVGDAM 148 (321)
T ss_dssp EEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE--------BSSSEEEEEEET---TEEEEEESS
T ss_pred EEEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheec-------ceEEEEEEeccc---cEEEEEEcc
Confidence 2445668899999876 34 444444 4899999999887 43222111 112567776654 699999998
Q ss_pred CcEEEEeCCccce---eeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 005352 509 SQVRILQGPNVIG---KYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIG 560 (701)
Q Consensus 509 g~I~iwd~~~~~~---~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~ 560 (701)
..+.++....... ..........++++.|-++++.++.+..+|.+.++....
T Consensus 149 ~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 149 KSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp SSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred cCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 8888874332111 122222455688999987778999999999999999864
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.017 Score=48.52 Aligned_cols=99 Identities=19% Similarity=0.241 Sum_probs=71.3
Q ss_pred eEEEEEec---CC--eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEE
Q 005352 357 ILDLSWSK---NN--YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD 431 (701)
Q Consensus 357 I~~l~~s~---~~--~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~ 431 (701)
|++|++.. +| .|+.|+.|..|++|+ ..+.+..+.....|++++-.. ...|+.+..+|+|-+|+-... .-.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei~e~~~v~~L~~~~--~~~F~Y~l~NGTVGvY~~~~R-lWR 76 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFK--GDEIVAEITETDKVTSLCSLG--GGRFAYALANGTVGVYDRSQR-LWR 76 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEe--CCcEEEEEecccceEEEEEcC--CCEEEEEecCCEEEEEeCcce-eee
Confidence 55666554 44 899999999999996 457788888889999998775 578999999999999976322 222
Q ss_pred EecCCCcEEEEEEee-CC---CeEEEEecCCcEE
Q 005352 432 WVDIRQIVTAVCYRP-DG---QGGIVGSMMGDCR 461 (701)
Q Consensus 432 ~~~~~~~i~~i~~sp-~g---~~l~~gs~dg~v~ 461 (701)
. ..+..++++++.. ++ ..|++|-.+|.|-
T Consensus 77 i-KSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 77 I-KSKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred e-ccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 2 2334466665543 33 3688888888764
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.051 Score=58.55 Aligned_cols=175 Identities=13% Similarity=0.141 Sum_probs=94.5
Q ss_pred cEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEec---CCCc-----EEEEEEee
Q 005352 376 TVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVD---IRQI-----VTAVCYRP 446 (701)
Q Consensus 376 ~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~---~~~~-----i~~i~~sp 446 (701)
.|.||+. .|+.+..+. ..+.+.++.|.. + ..|+....||.+++||+.... ....+ .... +..+.+..
T Consensus 62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~-~-e~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~ 137 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTD-D-EELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYK 137 (410)
T ss_pred EEEEECC-CCCEeEEEEECCCCEEEEEECC-C-CeEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCC
Confidence 5888886 455566554 338999999986 4 456666789999999997443 11111 1111 22223332
Q ss_pred CCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccC--CCCCCeeE-EEEecCCCCEEEEEECCCcEEEEeCCccceee
Q 005352 447 DGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKK--APCKRITG-FQFLPQDSSKVMVSCADSQVRILQGPNVIGKY 523 (701)
Q Consensus 447 ~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~--~~~~~i~~-l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~ 523 (701)
+| +++-+.++.+.+..--................. ........ ..+.. +....+....++.+.+.+......
T Consensus 138 ~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~-~~~~~i~~~~g~~i~~i~~~~~~~-- 212 (410)
T PF04841_consen 138 NG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSS-DRVVEILLANGETIYIIDENSFKQ-- 212 (410)
T ss_pred CC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeec-CcceEEEEecCCEEEEEEcccccc--
Confidence 44 455455565544432222111110000111000 00111111 22333 344555555666777555433211
Q ss_pred ecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 005352 524 KGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGH 561 (701)
Q Consensus 524 ~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~ 561 (701)
....+++..+++||+|++||.-..+|.+.+...+-.
T Consensus 213 --i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~ 248 (410)
T PF04841_consen 213 --IDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFS 248 (410)
T ss_pred --ccCCCCeEEEEECCCCCEEEEEECCCCEEEEECccc
Confidence 223468999999999999999999999999875433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.14 Score=56.83 Aligned_cols=176 Identities=11% Similarity=0.125 Sum_probs=100.5
Q ss_pred CCCcEEEEECCCCeeeeeecCC-CC--------------------e-EEEEEeeCCCCEEEEEEcCC-------------
Q 005352 373 IDKTVRLWRVGNDHCLRVFPHS-NY--------------------V-TCVHFNPVDDNYFISGSIDG------------- 417 (701)
Q Consensus 373 ~dg~I~iWd~~~~~~~~~~~h~-~~--------------------V-~~l~f~p~~~~~l~sgs~dg------------- 417 (701)
.++.|..+|..+++.+..+... .. + ...++.+ .+..++.++.++
T Consensus 173 ~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~-~~g~V~vg~~~g~~~~~~~~~~~~~ 251 (488)
T cd00216 173 VRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDP-KTNLVYVGTGNGSPWNWGGRRTPGD 251 (488)
T ss_pred CCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeC-CCCEEEEECCCCCCCccCCccCCCC
Confidence 4678888899888888776521 10 0 1233444 456777776665
Q ss_pred -----cEEEEeCCCCcEEEEecCC-CcE------EEEEEe----eCCC---eEEEEecCCcEEEEECCCCeeeeeeeEEe
Q 005352 418 -----KVRIWAVLSCHVVDWVDIR-QIV------TAVCYR----PDGQ---GGIVGSMMGDCRFYNVSDNHLELDAEICV 478 (701)
Q Consensus 418 -----~v~iwd~~~~~~~~~~~~~-~~i------~~i~~s----p~g~---~l~~gs~dg~v~i~d~~~~~~~~~~~~~~ 478 (701)
.|.-+|..+++.+-..... ... ....+. -++. .+++++.+|.+..+|..+++.........
T Consensus 252 ~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~ 331 (488)
T cd00216 252 NLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE 331 (488)
T ss_pred CCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec
Confidence 6889999999877333211 101 111111 1333 57888899999999999998876544321
Q ss_pred ecccCCCCCCeeEEEEecCCCCEEEE------------------EECCCcEEEEeCCccceeeecccCC--------CCe
Q 005352 479 HSKKKAPCKRITGFQFLPQDSSKVMV------------------SCADSQVRILQGPNVIGKYKGLRRS--------GNQ 532 (701)
Q Consensus 479 ~~~~~~~~~~i~~l~~~p~~~~~l~~------------------~s~dg~I~iwd~~~~~~~~~~~~~~--------~~v 532 (701)
.. +...| ..+++ ...++.|.-+|..+.....+..... .+.
T Consensus 332 ~~-----------~~~~~---~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~ 397 (488)
T cd00216 332 QP-----------MAYDP---GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPH 397 (488)
T ss_pred cc-----------cccCC---ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcc
Confidence 11 11111 11111 1234566666666554444332110 111
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEeCCCCCC
Q 005352 533 LSACFTSDGKHIVSAGEDSNVYMWNCIGHEE 563 (701)
Q Consensus 533 ~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~ 563 (701)
..-.....+.+|+.++.||.|+.+|.++++.
T Consensus 398 ~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~ 428 (488)
T cd00216 398 WGGSLATAGNLVFAGAADGYFRAFDATTGKE 428 (488)
T ss_pred cCcceEecCCeEEEECCCCeEEEEECCCCce
Confidence 1111123567899999999999999999874
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0076 Score=68.51 Aligned_cols=148 Identities=14% Similarity=0.132 Sum_probs=98.0
Q ss_pred CCCEEEEE-EcCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeC-------CCeEEEEecCCcEEEEECCCCeeeeeeeEE
Q 005352 406 DDNYFISG-SIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPD-------GQGGIVGSMMGDCRFYNVSDNHLELDAEIC 477 (701)
Q Consensus 406 ~~~~l~sg-s~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~-------g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~ 477 (701)
+.++|+.- .....|+-.|+..|+++........+.-..+.|+ ....++|-.+..+..||.+-....+ ..
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~---v~ 568 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKL---VD 568 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCce---ee
Confidence 34444443 3457899999999999965555444444555564 3356778888999999998643111 11
Q ss_pred eecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEe
Q 005352 478 VHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWN 557 (701)
Q Consensus 478 ~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd 557 (701)
...+........+|++-. ...+|++|+.+|.||+||--....+-...+-..+|..+..+.||++|+..+ +..|.+++
T Consensus 569 ~~~k~Y~~~~~Fs~~aTt--~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~ 645 (794)
T PF08553_consen 569 SQSKQYSSKNNFSCFATT--EDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLID 645 (794)
T ss_pred ccccccccCCCceEEEec--CCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEE
Confidence 111122334556666655 468999999999999999533222222233578999999999999998776 56788887
Q ss_pred CC
Q 005352 558 CI 559 (701)
Q Consensus 558 ~~ 559 (701)
..
T Consensus 646 t~ 647 (794)
T PF08553_consen 646 TL 647 (794)
T ss_pred Ee
Confidence 53
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.13 Score=55.03 Aligned_cols=199 Identities=14% Similarity=0.137 Sum_probs=135.9
Q ss_pred EEEEEecCC--eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEc---CCcEEEEeCCCCcEEEE
Q 005352 358 LDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSI---DGKVRIWAVLSCHVVDW 432 (701)
Q Consensus 358 ~~l~~s~~~--~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~---dg~v~iwd~~~~~~~~~ 432 (701)
..++.++.+ .+++...+..|.+.|..+........-......++++| +++.+..+.. ++.+.+.|..+.+....
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~~~~~ 155 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNKVTAT 155 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECC-CCCEEEEEecccCCceEEEEeCCCCeEEEE
Confidence 456677776 44555557899999988888888877555788999999 6666555544 68899999998888866
Q ss_pred ecCCCcEEEEEEeeCCCeEEEEe-cCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEEC-C--
Q 005352 433 VDIRQIVTAVCYRPDGQGGIVGS-MMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCA-D-- 508 (701)
Q Consensus 433 ~~~~~~i~~i~~sp~g~~l~~gs-~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~-d-- 508 (701)
.........+++.|+|+.+++.. .++.+.+.|........ .. .............+.+.| ++..+.+... +
T Consensus 156 ~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~---~~~~~~~~~~P~~i~v~~-~g~~~yV~~~~~~~ 230 (381)
T COG3391 156 IPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GS---VGSLVGVGTGPAGIAVDP-DGNRVYVANDGSGS 230 (381)
T ss_pred EecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cc---cccccccCCCCceEEECC-CCCEEEEEeccCCC
Confidence 55443448999999999777765 68899999977665431 10 000112223446688888 5554444433 3
Q ss_pred CcEEEEeCCccceeeecccCCC-CeEEEEEecCCCEEEEEeCC-CcEEEEeCCCCC
Q 005352 509 SQVRILQGPNVIGKYKGLRRSG-NQLSACFTSDGKHIVSAGED-SNVYMWNCIGHE 562 (701)
Q Consensus 509 g~I~iwd~~~~~~~~~~~~~~~-~v~~l~~s~dg~~l~sgs~D-g~I~iWd~~~~~ 562 (701)
+.+...|............... ....+.++|+|.++.+.... +.+.+-|..+..
T Consensus 231 ~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~ 286 (381)
T COG3391 231 NNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDR 286 (381)
T ss_pred ceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCc
Confidence 5888888876444333111111 56678899999999888444 788888877655
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.022 Score=47.88 Aligned_cols=103 Identities=18% Similarity=0.259 Sum_probs=73.3
Q ss_pred eEEEEEeeCCC---CEEEEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeee
Q 005352 397 VTCVHFNPVDD---NYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELD 473 (701)
Q Consensus 397 V~~l~f~p~~~---~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~ 473 (701)
|+++++...++ +.|++|+.|..||+|+- ..++......+.|++++-... ..++.+..+|+|-+|+-.......
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~RlWRi- 77 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQRLWRI- 77 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeCcceeeee-
Confidence 66777765433 68999999999999964 466777777888999888776 568889999999999875433221
Q ss_pred eeEEeecccCCCCCCeeEEEEecC---CCCEEEEEECCCcEEE
Q 005352 474 AEICVHSKKKAPCKRITGFQFLPQ---DSSKVMVSCADSQVRI 513 (701)
Q Consensus 474 ~~~~~~~~~~~~~~~i~~l~~~p~---~~~~l~~~s~dg~I~i 513 (701)
.....++++++..- ....|++|-.+|.|-+
T Consensus 78 ----------KSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 78 ----------KSKNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred ----------ccCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 12234666666542 2347888888888743
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.00087 Score=44.03 Aligned_cols=34 Identities=50% Similarity=1.096 Sum_probs=31.1
Q ss_pred eeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEE
Q 005352 245 EIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQ 278 (701)
Q Consensus 245 ~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd 278 (701)
.+.+|...|.++.|.+++.++++++.|+.+++|+
T Consensus 7 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 7 TLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 4567999999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.14 Score=54.29 Aligned_cols=198 Identities=16% Similarity=0.164 Sum_probs=106.7
Q ss_pred ccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeecC------------------CCCeEEEEEeeCCCCEEEEEE
Q 005352 354 SGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPH------------------SNYVTCVHFNPVDDNYFISGS 414 (701)
Q Consensus 354 ~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~h------------------~~~V~~l~f~p~~~~~l~sgs 414 (701)
...+....|+|+| .++-. .++.|.++++.++...+.-.. -+.-..+-|+| ++++|+...
T Consensus 42 ~~~~~~~~~sP~g~~~~~v-~~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSp-d~~~la~~~ 119 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFV-RDNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSP-DSKYLAFLR 119 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEE-ETTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-T-TSSEEEEEE
T ss_pred ccccccceeecCCCeeEEE-ecCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECC-CCCEEEEEE
Confidence 4567888999999 44444 467899999887754433221 12235678999 888888764
Q ss_pred cC-Cc-----------------------------------EEEEeCCCCcEEE--Ee----cCCCcEEEEEEeeCCCeEE
Q 005352 415 ID-GK-----------------------------------VRIWAVLSCHVVD--WV----DIRQIVTAVCYRPDGQGGI 452 (701)
Q Consensus 415 ~d-g~-----------------------------------v~iwd~~~~~~~~--~~----~~~~~i~~i~~sp~g~~l~ 452 (701)
.| .. +.|+|+.+++... .. ....-+..+.|.++++.|+
T Consensus 120 ~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~ 199 (353)
T PF00930_consen 120 FDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLW 199 (353)
T ss_dssp EE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEE
T ss_pred ECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEE
Confidence 43 11 3334444444321 11 1234588899999998555
Q ss_pred EEecC-----CcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEe-cCCCCEEEEEECCCcEEEE--eCCccceeee
Q 005352 453 VGSMM-----GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFL-PQDSSKVMVSCADSQVRIL--QGPNVIGKYK 524 (701)
Q Consensus 453 ~gs~d-----g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~-p~~~~~l~~~s~dg~I~iw--d~~~~~~~~~ 524 (701)
+.-.+ -.+.++|..++......... ...-......+.+. +++..++.....+|.-+|| +....... .
T Consensus 200 ~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~----~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~-~ 274 (353)
T PF00930_consen 200 VQWLNRDQNRLDLVLCDASTGETRVVLEET----SDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPR-Q 274 (353)
T ss_dssp EEEEETTSTEEEEEEEEECTTTCEEEEEEE----SSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEE-E
T ss_pred EEEcccCCCEEEEEEEECCCCceeEEEEec----CCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccccccee-c
Confidence 54332 23667787765543322111 11112233455555 6566777777778766665 44433322 2
Q ss_pred cccCCCCeEE-EEEecCCCEEE-EEeCC--CcEEEEeC
Q 005352 525 GLRRSGNQLS-ACFTSDGKHIV-SAGED--SNVYMWNC 558 (701)
Q Consensus 525 ~~~~~~~v~~-l~~s~dg~~l~-sgs~D--g~I~iWd~ 558 (701)
.....-.|.. +.++++++.|+ +|..+ +.-.||.+
T Consensus 275 lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v 312 (353)
T PF00930_consen 275 LTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRV 312 (353)
T ss_dssp SS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEE
T ss_pred cccCceeecccceEcCCCCEEEEEecCCCCCceEEEEE
Confidence 2224455644 67888877654 55542 23444443
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.25 Score=48.87 Aligned_cols=199 Identities=14% Similarity=0.160 Sum_probs=97.7
Q ss_pred eeccCCCcEEEEEEccCCC-EEEEEeCCCcEEEEEeecCeeeeeecCCC-CCCceeEEeeccCCCcceeeeccccceeeE
Q 005352 245 EIQAHDGSILTMKFSPDGQ-YLASAGDDGVVRLWQVVEDERLTEVDIPE-IDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (701)
Q Consensus 245 ~l~~H~~~I~~l~fspdg~-~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (701)
.+.+-...+..|.|.|+.. ++++....+.|...+. +++.+..+.+.. .+...+.+..+. ...+.-...
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~---~~vl~~Er~------ 85 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNG---RYVLSEERD------ 85 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STT---EEEEEETTT------
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCC---EEEEEEcCC------
Confidence 4555566799999999755 5566667777777775 467777776543 222222222111 011111111
Q ss_pred EeeecCCccEEEcCC--ccccccCCCeEEE-----cCCccCeEEEEEecCC-eEEEEECCCcEEEEECCC---Ceeeeee
Q 005352 323 SLRRTSESACVVFPP--KVFRILEKPLHEF-----HGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGN---DHCLRVF 391 (701)
Q Consensus 323 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-----~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~---~~~~~~~ 391 (701)
..+..+.. ..-.+.......+ ..+...+-.|+|.+.+ .|+.+-...-..||.+.. ...+...
T Consensus 86 -------~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~ 158 (248)
T PF06977_consen 86 -------QRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVS 158 (248)
T ss_dssp -------TEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEE
T ss_pred -------CcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeec
Confidence 11111111 0000000001111 2355678999999986 666677776677776653 2222111
Q ss_pred c---------CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCC----------cEEEEEEeeCCCeEE
Q 005352 392 P---------HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQ----------IVTAVCYRPDGQGGI 452 (701)
Q Consensus 392 ~---------h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~----------~i~~i~~sp~g~~l~ 452 (701)
. ....+.+++++|..+++++.......|.++| .+++++....... ..-.|+|.++|+..+
T Consensus 159 ~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI 237 (248)
T PF06977_consen 159 DDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYI 237 (248)
T ss_dssp E-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEE
T ss_pred cccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEE
Confidence 1 3456889999997788888888888999999 6677665544332 578899999986555
Q ss_pred EEecCCcEEE
Q 005352 453 VGSMMGDCRF 462 (701)
Q Consensus 453 ~gs~dg~v~i 462 (701)
++ .-+..++
T Consensus 238 vs-EpNlfy~ 246 (248)
T PF06977_consen 238 VS-EPNLFYR 246 (248)
T ss_dssp EE-TTTEEEE
T ss_pred Ec-CCceEEE
Confidence 44 4444443
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.12 Score=49.72 Aligned_cols=139 Identities=14% Similarity=0.067 Sum_probs=92.2
Q ss_pred CCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCC
Q 005352 406 DDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAP 485 (701)
Q Consensus 406 ~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~ 485 (701)
...+++.|+..+.+.--|..++.++-.......|.+-+.- -|++++.|...|.+++.+..++.........
T Consensus 22 skT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~-------- 92 (354)
T KOG4649|consen 22 SKTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVIL-------- 92 (354)
T ss_pred CceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeeh--------
Confidence 4567888888999999999999877544444555444333 4678999999999999999998665443322
Q ss_pred CCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEE
Q 005352 486 CKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVY 554 (701)
Q Consensus 486 ~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~ 554 (701)
..|.+-+....++.++.+|+.|+..+..|.++....++..-..+...+-++.|-...|..+...|.+.
T Consensus 93 -~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vl 160 (354)
T KOG4649|consen 93 -ETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVL 160 (354)
T ss_pred -hhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEE
Confidence 11222222223789999999999999999998888877644444444445555222333333344443
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0035 Score=67.10 Aligned_cols=91 Identities=15% Similarity=0.249 Sum_probs=77.9
Q ss_pred ccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeE-EEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEE
Q 005352 354 SGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVT-CVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV 430 (701)
Q Consensus 354 ~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~-~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~ 430 (701)
...|.-+.|+|.- .+|++..+|.|.+..+. .+.+.++. +...++ +++|.| ||+.|+.|-.||+|++.|+.++..+
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEccCCCce
Confidence 3567889999987 99999999999999988 77888888 777777 999999 9999999999999999999998877
Q ss_pred EE--ecCCCcEEEEEEee
Q 005352 431 DW--VDIRQIVTAVCYRP 446 (701)
Q Consensus 431 ~~--~~~~~~i~~i~~sp 446 (701)
.. ......|.++-|.+
T Consensus 98 ~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWDR 115 (665)
T ss_pred eccccccccchheeeccc
Confidence 55 44566788887764
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.54 Score=49.46 Aligned_cols=185 Identities=18% Similarity=0.222 Sum_probs=89.3
Q ss_pred ecCC-eEEEEE--CC----CcEEEEECCCCeeeeeec----CCCCeEEEEEeeCCCCEEEEEEc----------------
Q 005352 363 SKNN-YLLSAS--ID----KTVRLWRVGNDHCLRVFP----HSNYVTCVHFNPVDDNYFISGSI---------------- 415 (701)
Q Consensus 363 s~~~-~l~s~s--~d----g~I~iWd~~~~~~~~~~~----h~~~V~~l~f~p~~~~~l~sgs~---------------- 415 (701)
-|+| .++++- .+ |-+.+.|-++.+...... ....-..+-|.| ..+.++|...
T Consensus 138 lp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~d~~ 216 (461)
T PF05694_consen 138 LPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPEDLE 216 (461)
T ss_dssp -SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---TTTHH
T ss_pred cCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChhHhh
Confidence 3566 555542 22 457888888777776665 234566788888 7788887642
Q ss_pred ----CCcEEEEeCCCCcEEEEecCC---CcEEEEEEeeC--CCeEEEEe-cCCcE-EEEECCCCeeeeeeeEEeecccCC
Q 005352 416 ----DGKVRIWAVLSCHVVDWVDIR---QIVTAVCYRPD--GQGGIVGS-MMGDC-RFYNVSDNHLELDAEICVHSKKKA 484 (701)
Q Consensus 416 ----dg~v~iwd~~~~~~~~~~~~~---~~i~~i~~sp~--g~~l~~gs-~dg~v-~i~d~~~~~~~~~~~~~~~~~~~~ 484 (701)
..++.+||+.+.+.++.+... ..+..|.|..+ ..+-++|+ ...+| ++|....+....+..+.+......
T Consensus 217 ~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~ 296 (461)
T PF05694_consen 217 AGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVE 296 (461)
T ss_dssp HH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--
T ss_pred cccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccC
Confidence 367999999999999888765 34667777553 44444433 34444 445546666665555554432211
Q ss_pred -------------CCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCcccee-eec------------------ccCCCCe
Q 005352 485 -------------PCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGK-YKG------------------LRRSGNQ 532 (701)
Q Consensus 485 -------------~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~-~~~------------------~~~~~~v 532 (701)
...-|+.|.++.++.-+.++.-..|.|+.||+.+.... +.+ ..-.+..
T Consensus 297 ~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgP 376 (461)
T PF05694_consen 297 GWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGP 376 (461)
T ss_dssp SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S--
T ss_pred cccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCC
Confidence 12457999999954444444455999999998753221 111 0112234
Q ss_pred EEEEEecCCCEEEEEe
Q 005352 533 LSACFTSDGKHIVSAG 548 (701)
Q Consensus 533 ~~l~~s~dg~~l~sgs 548 (701)
.-+..|-||+.|...+
T Consensus 377 qMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 377 QMVQLSLDGKRLYVTN 392 (461)
T ss_dssp --EEE-TTSSEEEEE-
T ss_pred CeEEEccCCeEEEEEe
Confidence 6677888888776653
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.061 Score=59.21 Aligned_cols=135 Identities=13% Similarity=0.074 Sum_probs=87.1
Q ss_pred CCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecC--------------------------------------
Q 005352 416 DGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMM-------------------------------------- 457 (701)
Q Consensus 416 dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~d-------------------------------------- 457 (701)
.+.+.+.|..+.++............+.++|+|+++++.+.+
T Consensus 214 ~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V 293 (635)
T PRK02888 214 RSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTI 293 (635)
T ss_pred eEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEE
Confidence 355777788777766555555566778888888888887521
Q ss_pred --CcEEEEECCC----C-eeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEE-CCCcEEEEeCCccceeee-----
Q 005352 458 --GDCRFYNVSD----N-HLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSC-ADSQVRILQGPNVIGKYK----- 524 (701)
Q Consensus 458 --g~v~i~d~~~----~-~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s-~dg~I~iwd~~~~~~~~~----- 524 (701)
+.|.+.|..+ + .... ...-.....++.++| +++++++++ .+.+|.|+|+.+....+.
T Consensus 294 ~gn~V~VID~~t~~~~~~~v~~---------yIPVGKsPHGV~vSP-DGkylyVanklS~tVSVIDv~k~k~~~~~~~~~ 363 (635)
T PRK02888 294 GGSKVPVVDGRKAANAGSALTR---------YVPVPKNPHGVNTSP-DGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKP 363 (635)
T ss_pred CCCEEEEEECCccccCCcceEE---------EEECCCCccceEECC-CCCEEEEeCCCCCcEEEEEChhhhhhhhccCCc
Confidence 2244444433 1 1100 011224567889999 566555554 599999999886553221
Q ss_pred ------cccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 005352 525 ------GLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIG 560 (701)
Q Consensus 525 ------~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~ 560 (701)
...-.......+|+++|....|---|..|..||+..
T Consensus 364 ~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 364 RDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred cceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 111233445778999999888889999999999876
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.37 Score=49.41 Aligned_cols=177 Identities=14% Similarity=0.128 Sum_probs=96.9
Q ss_pred ecCCeEEEEECCCcEEEEECCCCeeeeeec------CCCCeEEEEEeeCCCCEEEEEEc-----------CCcEEEEeCC
Q 005352 363 SKNNYLLSASIDKTVRLWRVGNDHCLRVFP------HSNYVTCVHFNPVDDNYFISGSI-----------DGKVRIWAVL 425 (701)
Q Consensus 363 s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~------h~~~V~~l~f~p~~~~~l~sgs~-----------dg~v~iwd~~ 425 (701)
...+.|+++... +.+++..++..+..+. .....+.+...| ++.+.++... -|.|+.+|.
T Consensus 75 d~~g~Lv~~~~g--~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~p-dG~~wfgt~~~~~~~~~~~~~~G~lyr~~p- 150 (307)
T COG3386 75 DAGGRLIACEHG--VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDP-DGRIWFGDMGYFDLGKSEERPTGSLYRVDP- 150 (307)
T ss_pred cCCCeEEEEccc--cEEEeccCCceeEEeccccCCCCcCCCCceeEcC-CCCEEEeCCCccccCccccCCcceEEEEcC-
Confidence 334466655443 5666666555533332 235567788888 7776554333 133444444
Q ss_pred CCcEEEEec-CCCcEEEEEEeeCCCeEEEEec-CCcEEEEECCCCeeeeeee-EEeecccCCCCCCeeEEEEecCCCCEE
Q 005352 426 SCHVVDWVD-IRQIVTAVCYRPDGQGGIVGSM-MGDCRFYNVSDNHLELDAE-ICVHSKKKAPCKRITGFQFLPQDSSKV 502 (701)
Q Consensus 426 ~~~~~~~~~-~~~~i~~i~~sp~g~~l~~gs~-dg~v~i~d~~~~~~~~~~~-~~~~~~~~~~~~~i~~l~~~p~~~~~l 502 (701)
.+..+.... +-...+.|+|+||++.|+.+.. .+.|+-|++.......... .... ........-+++... ++.+.
T Consensus 151 ~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~--~~~~~G~PDG~~vDa-dG~lw 227 (307)
T COG3386 151 DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVD--FDEEPGLPDGMAVDA-DGNLW 227 (307)
T ss_pred CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEE--ccCCCCCCCceEEeC-CCCEE
Confidence 455554443 3556788999999988877755 4788888876311111111 0111 111234445566655 55555
Q ss_pred EEEECCC-cEEEEeCC-ccceeeecccCCCCeEEEEEe-cCCCEEEEEe
Q 005352 503 MVSCADS-QVRILQGP-NVIGKYKGLRRSGNQLSACFT-SDGKHIVSAG 548 (701)
Q Consensus 503 ~~~s~dg-~I~iwd~~-~~~~~~~~~~~~~~v~~l~~s-~dg~~l~sgs 548 (701)
+++..+| .|.+|+.. .....+.. ....+++++|- ++.+.|+..+
T Consensus 228 ~~a~~~g~~v~~~~pdG~l~~~i~l--P~~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 228 VAAVWGGGRVVRFNPDGKLLGEIKL--PVKRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred EecccCCceEEEECCCCcEEEEEEC--CCCCCccceEeCCCcCEEEEEe
Confidence 4444443 89999877 23333333 44677888885 3445554433
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.64 Score=50.11 Aligned_cols=81 Identities=10% Similarity=-0.043 Sum_probs=49.4
Q ss_pred CCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCC
Q 005352 406 DDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAP 485 (701)
Q Consensus 406 ~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~ 485 (701)
+....+....++.+.+.+-...+. ....+++..|+++|+|++++.-..+|.+.+....-.+...+.... .
T Consensus 189 ~~~~~i~~~~g~~i~~i~~~~~~~---i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~-------~ 258 (410)
T PF04841_consen 189 DRVVEILLANGETIYIIDENSFKQ---IDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTD-------S 258 (410)
T ss_pred CcceEEEEecCCEEEEEEcccccc---ccCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecC-------c
Confidence 444455555555565444322211 333568999999999999999999999998876544433322211 2
Q ss_pred CCCeeEEEEec
Q 005352 486 CKRITGFQFLP 496 (701)
Q Consensus 486 ~~~i~~l~~~p 496 (701)
......+.|+-
T Consensus 259 ~~~p~~~~WCG 269 (410)
T PF04841_consen 259 KSPPKQMAWCG 269 (410)
T ss_pred CCCCcEEEEEC
Confidence 23445667765
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.79 E-value=1.1 Score=48.62 Aligned_cols=198 Identities=13% Similarity=0.101 Sum_probs=100.7
Q ss_pred EEEEecCC-eE-EEEECC----------CcEEEEECCCCeee--eeec--CCCC-eEEEEEeeCCCCEEEEEEcC----C
Q 005352 359 DLSWSKNN-YL-LSASID----------KTVRLWRVGNDHCL--RVFP--HSNY-VTCVHFNPVDDNYFISGSID----G 417 (701)
Q Consensus 359 ~l~~s~~~-~l-~s~s~d----------g~I~iWd~~~~~~~--~~~~--h~~~-V~~l~f~p~~~~~l~sgs~d----g 417 (701)
.+.|.+++ .| ++...+ ..|+.|.+.+...- ..|. .... ...+..++ ++++|+..... .
T Consensus 174 ~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~-d~~~l~i~~~~~~~~s 252 (414)
T PF02897_consen 174 SVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSK-DGRYLFISSSSGTSES 252 (414)
T ss_dssp EEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-T-TSSEEEEEEESSSSEE
T ss_pred eEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecC-cccEEEEEEEccccCC
Confidence 38999987 44 443222 23788888776432 3443 3333 66788888 88887754433 3
Q ss_pred cEEEEeCCCC-----cEEEEecCCCcEEEEEEeeCCCeEEEEe---cCCcEEEEECCCCeeeeeeeEEeecccCCCCCCe
Q 005352 418 KVRIWAVLSC-----HVVDWVDIRQIVTAVCYRPDGQGGIVGS---MMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRI 489 (701)
Q Consensus 418 ~v~iwd~~~~-----~~~~~~~~~~~i~~i~~sp~g~~l~~gs---~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i 489 (701)
.+.+.++..+ ....+......+....-+..+.+++... ..+.|...++............+. ......+
T Consensus 253 ~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~---~~~~~~l 329 (414)
T PF02897_consen 253 EVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIP---EDEDVSL 329 (414)
T ss_dssp EEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE-----SSSEEE
T ss_pred eEEEEeccccCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcC---CCCceeE
Confidence 4788888774 3444444444444333333444444332 245677777776542110101111 0111235
Q ss_pred eEEEEecCCCCEEEEEECCC--cEEEEeCC-ccceeeecccCCCCeEEEEEecCCCEEE-EE-e--CCCcEEEEeCCCCC
Q 005352 490 TGFQFLPQDSSKVMVSCADS--QVRILQGP-NVIGKYKGLRRSGNQLSACFTSDGKHIV-SA-G--EDSNVYMWNCIGHE 562 (701)
Q Consensus 490 ~~l~~~p~~~~~l~~~s~dg--~I~iwd~~-~~~~~~~~~~~~~~v~~l~~s~dg~~l~-sg-s--~Dg~I~iWd~~~~~ 562 (701)
..+... ...+++....++ .|++++.. ............+.|..+...+++..+. +- | .-++++.||+.+++
T Consensus 330 ~~~~~~--~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~ 407 (414)
T PF02897_consen 330 EDVSLF--KDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGE 407 (414)
T ss_dssp EEEEEE--TTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred EEEEEE--CCEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence 555543 344555555544 57778888 4333332222445566666556555443 22 2 24679999998887
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.33 Score=53.76 Aligned_cols=155 Identities=12% Similarity=0.140 Sum_probs=94.8
Q ss_pred CeEEEEECCCcEEEEECCCCeeeeeecCCCC------eE-EEEEeeCCCCEEEEEE---------cCCcEEEEeCCCCcE
Q 005352 366 NYLLSASIDKTVRLWRVGNDHCLRVFPHSNY------VT-CVHFNPVDDNYFISGS---------IDGKVRIWAVLSCHV 429 (701)
Q Consensus 366 ~~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~------V~-~l~f~p~~~~~l~sgs---------~dg~v~iwd~~~~~~ 429 (701)
+.++.++.++.|.-+|.++++.+..+..... +. ...+. +..++.++ .++.|..+|..+++.
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~---~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~ 187 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV---KKLVIIGSSGAEFFACGVRGALRAYDVETGKL 187 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE---CCEEEEeccccccccCCCCcEEEEEECCCCce
Confidence 5788888999999999999999988864332 11 11222 24455554 367899999999987
Q ss_pred EEEecCC-C--------------------cE-EEEEEeeCCCeEEEEecCC------------------cEEEEECCCCe
Q 005352 430 VDWVDIR-Q--------------------IV-TAVCYRPDGQGGIVGSMMG------------------DCRFYNVSDNH 469 (701)
Q Consensus 430 ~~~~~~~-~--------------------~i-~~i~~sp~g~~l~~gs~dg------------------~v~i~d~~~~~ 469 (701)
+-..... . .+ ...++.+.+..+++++.++ .+.-+|+.+++
T Consensus 188 ~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~ 267 (488)
T cd00216 188 LWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGK 267 (488)
T ss_pred eeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCC
Confidence 6332211 0 01 1345555677888887665 68899999988
Q ss_pred eeeeeeEEeeccc--CCCCC-CeeEEEEecCCC---CEEEEEECCCcEEEEeCCccceeeec
Q 005352 470 LELDAEICVHSKK--KAPCK-RITGFQFLPQDS---SKVMVSCADSQVRILQGPNVIGKYKG 525 (701)
Q Consensus 470 ~~~~~~~~~~~~~--~~~~~-~i~~l~~~p~~~---~~l~~~s~dg~I~iwd~~~~~~~~~~ 525 (701)
.....+...+... ..... .+..+. ..++ ..+++++.+|.+..+|..+.....+.
T Consensus 268 ~~W~~~~~~~~~~~~~~~s~p~~~~~~--~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~ 327 (488)
T cd00216 268 VKWFYQTTPHDLWDYDGPNQPSLADIK--PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISAR 327 (488)
T ss_pred EEEEeeCCCCCCcccccCCCCeEEecc--ccCCCeeEEEEEECCCceEEEEECCCCcEeeEe
Confidence 7765433211100 00000 111111 1122 26778888999999999887766653
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.69 Score=47.31 Aligned_cols=147 Identities=10% Similarity=0.043 Sum_probs=83.3
Q ss_pred eEEEEECCCcEEEEECC-CCeeeee----ec-CCCCe-EEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEE---EecC-
Q 005352 367 YLLSASIDKTVRLWRVG-NDHCLRV----FP-HSNYV-TCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD---WVDI- 435 (701)
Q Consensus 367 ~l~s~s~dg~I~iWd~~-~~~~~~~----~~-h~~~V-~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~---~~~~- 435 (701)
.|.+-+.||.+.-..+. .|+.... |. ...++ ..-++.. .+..++--+.+|.|+--|+....... +.-.
T Consensus 149 ~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~-~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t 227 (342)
T PF06433_consen 149 GFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSR-DGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLT 227 (342)
T ss_dssp EEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEET-TTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-
T ss_pred ceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceEC-CCCeEEEEecCCEEEEEeccCCcccccCcccccC
Confidence 56666677777766665 3333322 11 12222 2223333 45555557788988888887665331 1100
Q ss_pred ---------CCcEEEEEEeeCCCeEEEEecCC----------cEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEec
Q 005352 436 ---------RQIVTAVCYRPDGQGGIVGSMMG----------DCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLP 496 (701)
Q Consensus 436 ---------~~~i~~i~~sp~g~~l~~gs~dg----------~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p 496 (701)
.+.-.-+++++..+.|++....| .|.+||+.+.+......+. ..+.+|+++.
T Consensus 228 ~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~---------~~~~Si~Vsq 298 (342)
T PF06433_consen 228 DAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE---------HPIDSIAVSQ 298 (342)
T ss_dssp HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE---------EEESEEEEES
T ss_pred ccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC---------CccceEEEcc
Confidence 12234477777666666643221 2888888888876554432 2367899999
Q ss_pred CCCCEEEEEE-CCCcEEEEeCCccceee
Q 005352 497 QDSSKVMVSC-ADSQVRILQGPNVIGKY 523 (701)
Q Consensus 497 ~~~~~l~~~s-~dg~I~iwd~~~~~~~~ 523 (701)
++..+|++.+ .++.+.+||..+....-
T Consensus 299 d~~P~L~~~~~~~~~l~v~D~~tGk~~~ 326 (342)
T PF06433_consen 299 DDKPLLYALSAGDGTLDVYDAATGKLVR 326 (342)
T ss_dssp SSS-EEEEEETTTTEEEEEETTT--EEE
T ss_pred CCCcEEEEEcCCCCeEEEEeCcCCcEEe
Confidence 7766776655 57999999998765443
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.075 Score=60.69 Aligned_cols=96 Identities=13% Similarity=0.164 Sum_probs=69.1
Q ss_pred eEEEEECCCcEEEEECCCCe--eee----eecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEE-EecCCCcE
Q 005352 367 YLLSASIDKTVRLWRVGNDH--CLR----VFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD-WVDIRQIV 439 (701)
Q Consensus 367 ~l~s~s~dg~I~iWd~~~~~--~~~----~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~-~~~~~~~i 439 (701)
..+.|-.+..+..||.+-.. ++. .+......+|++-. ...+||+|+.+|.||+||--..+... +.+...+|
T Consensus 544 ~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt--~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI 621 (794)
T PF08553_consen 544 QTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATT--EDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPI 621 (794)
T ss_pred ceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEec--CCceEEEEeCCCcEEeecccchhhhhcCCCCCCCe
Confidence 45566677788899987532 332 23355667888766 45689999999999999954433333 33568999
Q ss_pred EEEEEeeCCCeEEEEecCCcEEEEEC
Q 005352 440 TAVCYRPDGQGGIVGSMMGDCRFYNV 465 (701)
Q Consensus 440 ~~i~~sp~g~~l~~gs~dg~v~i~d~ 465 (701)
..|..+.||+++++.+. ..+.+++.
T Consensus 622 ~~iDvt~DGkwilaTc~-tyLlLi~t 646 (794)
T PF08553_consen 622 IGIDVTADGKWILATCK-TYLLLIDT 646 (794)
T ss_pred eEEEecCCCcEEEEeec-ceEEEEEE
Confidence 99999999999887664 66777775
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0071 Score=64.88 Aligned_cols=96 Identities=18% Similarity=0.155 Sum_probs=74.8
Q ss_pred CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcEE-EEEEeeCCCeEEEEecCCcEEEEECCCCeee
Q 005352 393 HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVT-AVCYRPDGQGGIVGSMMGDCRFYNVSDNHLE 471 (701)
Q Consensus 393 h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~-~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~ 471 (701)
....+.-+.|+| .-.++|.+..+|.|.++.+.-.++..+.-+...++ ++||.|||+.|++|-.||+|++.|+.++...
T Consensus 19 l~~~i~~~ewnP-~~dLiA~~t~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 19 LPINIKRIEWNP-KMDLIATRTEKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred cccceEEEEEcC-ccchhheeccCCcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 445678899999 88999999999999999988555555544666676 9999999999999999999999999988764
Q ss_pred eeeeEEeecccCCCCCCeeEEEEec
Q 005352 472 LDAEICVHSKKKAPCKRITGFQFLP 496 (701)
Q Consensus 472 ~~~~~~~~~~~~~~~~~i~~l~~~p 496 (701)
... .......|.++.|.+
T Consensus 98 ~~~-------~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 VSF-------LFSVETDISKGIWDR 115 (665)
T ss_pred ecc-------ccccccchheeeccc
Confidence 332 223335566777754
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.23 Score=55.77 Aligned_cols=194 Identities=14% Similarity=0.144 Sum_probs=104.8
Q ss_pred EEEEEecCCeEEEEECC------CcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCc-----EEEEeCCC
Q 005352 358 LDLSWSKNNYLLSASID------KTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGK-----VRIWAVLS 426 (701)
Q Consensus 358 ~~l~~s~~~~l~s~s~d------g~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~-----v~iwd~~~ 426 (701)
.+++...+..+++|+.| .++..||..+.+-...-.....-..+.....++.+.++|+.||. |-.||..+
T Consensus 326 ~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~ 405 (571)
T KOG4441|consen 326 VGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVT 405 (571)
T ss_pred ccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCC
Confidence 34444444477888888 35778888887744432222211222222227888999998864 77788877
Q ss_pred CcEEEEecCCCcEEEEEE-eeCCCeEEEEecCC------cEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCC
Q 005352 427 CHVVDWVDIRQIVTAVCY-RPDGQGGIVGSMMG------DCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDS 499 (701)
Q Consensus 427 ~~~~~~~~~~~~i~~i~~-sp~g~~l~~gs~dg------~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~ 499 (701)
.+-............... .-+|...++|+.++ ++..||..++.......+.... . -.+++.. ++
T Consensus 406 ~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R------~-~~g~a~~--~~ 476 (571)
T KOG4441|consen 406 NKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRR------S-GFGVAVL--NG 476 (571)
T ss_pred CcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCccccc------c-cceEEEE--CC
Confidence 654333322222222222 23677778887554 4788999988776543332211 1 1123332 57
Q ss_pred CEEEEEECCCc-----EEEEeCCccceeeec-ccCCCCeEEEEEecCCCEEEEEeCCCc-----EEEEeCCCC
Q 005352 500 SKVMVSCADSQ-----VRILQGPNVIGKYKG-LRRSGNQLSACFTSDGKHIVSAGEDSN-----VYMWNCIGH 561 (701)
Q Consensus 500 ~~l~~~s~dg~-----I~iwd~~~~~~~~~~-~~~~~~v~~l~~s~dg~~l~sgs~Dg~-----I~iWd~~~~ 561 (701)
.++++|+.|+. |..||..+..-.... ......-..++ .-+++..++|+.||. |-.||..+.
T Consensus 477 ~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~-~~~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 477 KIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVV-VLGGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred EEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEE-EECCEEEEEecccCccccceeEEcCCCCC
Confidence 88888887763 666776543222221 11111111111 235667778877764 555654444
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.18 Score=49.85 Aligned_cols=167 Identities=10% Similarity=0.170 Sum_probs=112.6
Q ss_pred cCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeecC--CCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCC
Q 005352 351 HGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPH--SNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSC 427 (701)
Q Consensus 351 ~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~h--~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~ 427 (701)
.|-...|.++.|+|+. .|++......-.||=..+|+.+.+++. -...-.|.+.. ++.+.++--.++.+.++.+...
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig-~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIG-GNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEec-CCEEEEEehhcceEEEEEEcCC
Confidence 3445569999999998 788877778888887788999988872 23345667765 6666666667888888877654
Q ss_pred cEE-E---------EecC-CCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEe--ecccCCCCCCeeEEEE
Q 005352 428 HVV-D---------WVDI-RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICV--HSKKKAPCKRITGFQF 494 (701)
Q Consensus 428 ~~~-~---------~~~~-~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~--~~~~~~~~~~i~~l~~ 494 (701)
..+ . ...+ +...-.++|.|..+.|+++-...-+.||.+............. .....-....+.++.|
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~ 240 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF 240 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence 211 1 1112 4567889999999999999988888888876433111111100 0001112356788999
Q ss_pred ecCCCCEEEEEECCCcEEEEeCCc
Q 005352 495 LPQDSSKVMVSCADSQVRILQGPN 518 (701)
Q Consensus 495 ~p~~~~~l~~~s~dg~I~iwd~~~ 518 (701)
.+..+.+++-+..++.+.-.|...
T Consensus 241 ~~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 241 NAITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred cCCCCcEEEEecCCceEEEEecCC
Confidence 987777777777788877777653
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.037 Score=58.35 Aligned_cols=145 Identities=14% Similarity=0.135 Sum_probs=97.7
Q ss_pred EEEEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCe-------EEEEecCCcEEEEECCCCeeeeeeeE-Eeec
Q 005352 409 YFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQG-------GIVGSMMGDCRFYNVSDNHLELDAEI-CVHS 480 (701)
Q Consensus 409 ~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~-------l~~gs~dg~v~i~d~~~~~~~~~~~~-~~~~ 480 (701)
+|.++.....|+-.|+..|+++........|+-+.+.|+.+. -++|-.+..|.-||.+-.... .+ ..+.
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~---kl~~~q~ 424 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN---KLAVVQS 424 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcc---eeeeeec
Confidence 344555667788899999999976666666888889886542 356777888999998843321 11 1122
Q ss_pred ccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 005352 481 KKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCI 559 (701)
Q Consensus 481 ~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~ 559 (701)
+.........|++-. ...++++|+.+|.||+||--....+-...+...+|..+..+.+|++|+..+ +..+.+-++.
T Consensus 425 kqy~~k~nFsc~aTT--~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 425 KQYSTKNNFSCFATT--ESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred cccccccccceeeec--CCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence 222223344444443 568999999999999999643222223334678999999999999988766 5566666653
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0047 Score=40.28 Aligned_cols=37 Identities=38% Similarity=0.744 Sum_probs=32.2
Q ss_pred CCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEE
Q 005352 345 KPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWR 381 (701)
Q Consensus 345 ~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd 381 (701)
++...+..|...|.++.|.+.+ .+++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 3456677899999999999987 999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.87 Score=44.99 Aligned_cols=189 Identities=13% Similarity=0.113 Sum_probs=112.3
Q ss_pred cEEEEEEccCCCEEEEEeCCC--cEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCC
Q 005352 252 SILTMKFSPDGQYLASAGDDG--VVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSE 329 (701)
Q Consensus 252 ~I~~l~fspdg~~Lasgs~Dg--~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (701)
-...+.|..+|.++-+.|.-| .|+.+|+.+++......++..- |.
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~-----Fg---------------------------- 92 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRY-----FG---------------------------- 92 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT-------E----------------------------
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccc-----cc----------------------------
Confidence 356788878888888888866 7889999998766555443210 00
Q ss_pred ccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCCeEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCE
Q 005352 330 SACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNY 409 (701)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~ 409 (701)
+- +.-+.+.|..+.| .++...+||..+.+.+..+...+.=..++. ++..
T Consensus 93 ---------------EG---it~~~d~l~qLTW----------k~~~~f~yd~~tl~~~~~~~y~~EGWGLt~---dg~~ 141 (264)
T PF05096_consen 93 ---------------EG---ITILGDKLYQLTW----------KEGTGFVYDPNTLKKIGTFPYPGEGWGLTS---DGKR 141 (264)
T ss_dssp ---------------EE---EEEETTEEEEEES----------SSSEEEEEETTTTEEEEEEE-SSS--EEEE---CSSC
T ss_pred ---------------ee---EEEECCEEEEEEe----------cCCeEEEEccccceEEEEEecCCcceEEEc---CCCE
Confidence 00 0112334455554 578899999999999999987777778873 5666
Q ss_pred EEEEEcCCcEEEEeCCCCcEEEEe---cCCC---cEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecc--
Q 005352 410 FISGSIDGKVRIWAVLSCHVVDWV---DIRQ---IVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSK-- 481 (701)
Q Consensus 410 l~sgs~dg~v~iwd~~~~~~~~~~---~~~~---~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~-- 481 (701)
|+.......|+++|..+-+....+ .... .++-+.|. +|...|=.=....|...|..++...-...+.....
T Consensus 142 Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~ 220 (264)
T PF05096_consen 142 LIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEV 220 (264)
T ss_dssp EEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHH
T ss_pred EEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcc
Confidence 776666778999998877655333 2222 34556664 55444444456677788888887654332221111
Q ss_pred -----cCCCCCCeeEEEEecCCCCEEEEE
Q 005352 482 -----KKAPCKRITGFQFLPQDSSKVMVS 505 (701)
Q Consensus 482 -----~~~~~~~i~~l~~~p~~~~~l~~~ 505 (701)
......-.++|++.|..+.++++|
T Consensus 221 ~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 221 GRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp TSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred cccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 111245689999999655555555
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.17 Score=54.57 Aligned_cols=109 Identities=16% Similarity=0.209 Sum_probs=69.9
Q ss_pred EEEEecCC--eEEEEECCCc--EEEEECCCCeeeeeecC-CCCeEEEEEeeCCCCEEEEEEc-CCc--EEEEeCCCCcEE
Q 005352 359 DLSWSKNN--YLLSASIDKT--VRLWRVGNDHCLRVFPH-SNYVTCVHFNPVDDNYFISGSI-DGK--VRIWAVLSCHVV 430 (701)
Q Consensus 359 ~l~~s~~~--~l~s~s~dg~--I~iWd~~~~~~~~~~~h-~~~V~~l~f~p~~~~~l~sgs~-dg~--v~iwd~~~~~~~ 430 (701)
..+|+|+| .+++...||. |.+.|+..++..+ +.+ .+.-+.=.|+| +++.++..+. .|. |.++++..+...
T Consensus 242 ~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~sp-dG~~ivf~Sdr~G~p~I~~~~~~g~~~~ 319 (425)
T COG0823 242 APAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSP-DGSKIVFTSDRGGRPQIYLYDLEGSQVT 319 (425)
T ss_pred CccCCCCCCEEEEEECCCCCccEEEEcCCCCccee-cccCCccccCccCCC-CCCEEEEEeCCCCCcceEEECCCCCcee
Confidence 45899999 5667777776 5556887777444 432 22233556889 8888776653 343 667777777665
Q ss_pred EEecCCCcEEEEEEeeCCCeEEEEecC-Cc--EEEEECCCCe
Q 005352 431 DWVDIRQIVTAVCYRPDGQGGIVGSMM-GD--CRFYNVSDNH 469 (701)
Q Consensus 431 ~~~~~~~~i~~i~~sp~g~~l~~gs~d-g~--v~i~d~~~~~ 469 (701)
........-..-.|+|+|++++..+.. |. |.++|+.++.
T Consensus 320 riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 320 RLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred EeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence 444333333377899999998887743 44 5666665443
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.48 E-value=2.4 Score=48.74 Aligned_cols=277 Identities=16% Similarity=0.149 Sum_probs=148.6
Q ss_pred CcEEEEEEccCCCEEEEEeCCCcEEEEEeecCe--eee--eecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeee
Q 005352 251 GSILTMKFSPDGQYLASAGDDGVVRLWQVVEDE--RLT--EVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRR 326 (701)
Q Consensus 251 ~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (701)
..|.-..|--|..||.++..||.+.-+.+.... ... ...+...++....|.......+.+ ..+.........
T Consensus 584 RSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa---~sdrP~viY~~n- 659 (1096)
T KOG1897|consen 584 RSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFA---LSDRPTVIYSSN- 659 (1096)
T ss_pred hheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEE---eCCCCEEEEecC-
Confidence 356666676678899999999999877665443 211 123333444444444333222111 111111111100
Q ss_pred cCCccEEEcCCccccccCCCeEEEcCCccCeEEE-EEecCC---eEEEEECCCcEEEEECCCCe--eeeeecCCCCeEEE
Q 005352 327 TSESACVVFPPKVFRILEKPLHEFHGHSGEILDL-SWSKNN---YLLSASIDKTVRLWRVGNDH--CLRVFPHSNYVTCV 400 (701)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l-~~s~~~---~l~s~s~dg~I~iWd~~~~~--~~~~~~h~~~V~~l 400 (701)
+ +.+..-- .-..+..+ .|+.+. .|+++. .+.+++-.+..-+ .+++.........+
T Consensus 660 -----------~------kLv~spl-s~kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvpl~~~prrI 720 (1096)
T KOG1897|consen 660 -----------G------KLVYSPL-SLKEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTVPLGESPRRI 720 (1096)
T ss_pred -----------C------cEEEecc-chHHhhhhcccccccCCceEEEec-CCceEEEEecchhhcceeeecCCCChhhe
Confidence 0 0000000 00111111 233332 344443 4456666554332 23344455566777
Q ss_pred EEeeCCCCEEEEEEcC--------------CcEEEEeCCCCcEEEEecC--CCc---EEEEEEeeC-CCeEEEEec----
Q 005352 401 HFNPVDDNYFISGSID--------------GKVRIWAVLSCHVVDWVDI--RQI---VTAVCYRPD-GQGGIVGSM---- 456 (701)
Q Consensus 401 ~f~p~~~~~l~sgs~d--------------g~v~iwd~~~~~~~~~~~~--~~~---i~~i~~sp~-g~~l~~gs~---- 456 (701)
++.+ ....+++.+.. ..++++|-++-+....... ... +.++.|..| +.++++|+.
T Consensus 721 ~~q~-~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~P 799 (1096)
T KOG1897|consen 721 CYQE-SSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYP 799 (1096)
T ss_pred Eecc-cceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeecc
Confidence 7766 34444433321 2377788777776644332 223 444558777 778888864
Q ss_pred ------CCcEEEEECCC-CeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCC
Q 005352 457 ------MGDCRFYNVSD-NHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRS 529 (701)
Q Consensus 457 ------dg~v~i~d~~~-~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~ 529 (701)
.|.|.+|.+.. +++.......+. +.+..+..- ++.++ ++-+..|++|+..+.........+.
T Consensus 800 de~ep~~GRIivfe~~e~~~L~~v~e~~v~-------Gav~aL~~f--ngkll--A~In~~vrLye~t~~~eLr~e~~~~ 868 (1096)
T KOG1897|consen 800 DENEPVNGRIIVFEFEELNSLELVAETVVK-------GAVYALVEF--NGKLL--AGINQSVRLYEWTTERELRIECNIS 868 (1096)
T ss_pred CCCCcccceEEEEEEecCCceeeeeeeeec-------cceeehhhh--CCeEE--EecCcEEEEEEccccceehhhhccc
Confidence 57888888877 444333222222 223333222 34444 4556789999987664444444577
Q ss_pred CCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 530 GNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 530 ~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
.++..+...-.|..|+.|.--+.+.+-.++..+
T Consensus 869 ~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~e 901 (1096)
T KOG1897|consen 869 NPIIALDLQVKGDEIAVGDLMRSITLLQYKGDE 901 (1096)
T ss_pred CCeEEEEEEecCcEEEEeeccceEEEEEEeccC
Confidence 889999999999999999988888877766555
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.35 E-value=1.5 Score=46.80 Aligned_cols=176 Identities=16% Similarity=0.185 Sum_probs=114.5
Q ss_pred CeEEEEEecCC-eEEEEEC---CCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEE-cCCcEEEEeCCCCcEE
Q 005352 356 EILDLSWSKNN-YLLSASI---DKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGS-IDGKVRIWAVLSCHVV 430 (701)
Q Consensus 356 ~I~~l~~s~~~-~l~s~s~---dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs-~dg~v~iwd~~~~~~~ 430 (701)
.-..+++++++ .+..+.. ++++.+.|..+.+.+....-...-..+++.| +++.++... .++.|.+.|.......
T Consensus 117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p-~g~~vyv~~~~~~~v~vi~~~~~~v~ 195 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTPTGVAVDP-DGNKVYVTNSDDNTVSVIDTSGNSVV 195 (381)
T ss_pred CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCcceEEECC-CCCeEEEEecCCCeEEEEeCCCccee
Confidence 44578889988 5544443 7899999999998888865433338999999 887555544 7889999998776666
Q ss_pred E-----EecCCCcEEEEEEeeCCCeEEEEecC---CcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEE
Q 005352 431 D-----WVDIRQIVTAVCYRPDGQGGIVGSMM---GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKV 502 (701)
Q Consensus 431 ~-----~~~~~~~i~~i~~sp~g~~l~~gs~d---g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l 502 (701)
. ..........+.+.|+|..+.+.... +.+...|..++...... ...... ....+.+.| ++..+
T Consensus 196 ~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~------~~~~~~-~~~~v~~~p-~g~~~ 267 (381)
T COG3391 196 RGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATD------LPVGSG-APRGVAVDP-AGKAA 267 (381)
T ss_pred ccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEec------cccccC-CCCceeECC-CCCEE
Confidence 3 23334456778999999977776554 58888888876653210 011111 345678888 56666
Q ss_pred EEE-ECCCcEEEEeCCccceeeeccc---CCCCeEEEEEecC
Q 005352 503 MVS-CADSQVRILQGPNVIGKYKGLR---RSGNQLSACFTSD 540 (701)
Q Consensus 503 ~~~-s~dg~I~iwd~~~~~~~~~~~~---~~~~v~~l~~s~d 540 (701)
.+. +..+.+.+.|............ ....+..+++.+.
T Consensus 268 yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 309 (381)
T COG3391 268 YVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPL 309 (381)
T ss_pred EEEecCCCeEEEEeCCCCceeeeecccccccccceeccceee
Confidence 555 4468899998875443332211 2223555555544
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=96.29 E-value=2 Score=45.91 Aligned_cols=185 Identities=9% Similarity=0.066 Sum_probs=104.6
Q ss_pred eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCC--------------------
Q 005352 367 YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS-------------------- 426 (701)
Q Consensus 367 ~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~-------------------- 426 (701)
+++.-+.||.+.+++-+.......+..---...+.|.+ ..+.|++++.+..|..|....
T Consensus 147 ~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~-~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~ 225 (418)
T PF14727_consen 147 FICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCP-RTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISS 225 (418)
T ss_pred EEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEee-cCCEEEEecCceeEEEecHHHhhhccccccccccccccccc
Confidence 78889999999999987766555555433344567888 777889988888888885421
Q ss_pred CcEE--E-EecCCCcEEEEEEee---CCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEE------
Q 005352 427 CHVV--D-WVDIRQIVTAVCYRP---DGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQF------ 494 (701)
Q Consensus 427 ~~~~--~-~~~~~~~i~~i~~sp---~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~------ 494 (701)
++.+ . .+...+.+..|.... ....+++-+ ..++.+.+-. +.+....++.. .+.....|
T Consensus 226 ~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLg-er~Lf~l~~~-G~l~~~krLd~--------~p~~~~~Y~~~~~~ 295 (418)
T PF14727_consen 226 GKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLG-ERSLFCLKDN-GSLRFQKRLDY--------NPSCFCPYRVPWYN 295 (418)
T ss_pred cccccceeEEECCceeEEEEEEEcCCCCceEEEEe-cceEEEEcCC-CeEEEEEecCC--------ceeeEEEEEeeccc
Confidence 1111 1 223344555554433 222333332 2445555543 33333222211 11111111
Q ss_pred ecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 495 LPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 495 ~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
.|.....+++++.++++.||.-.+..-..+.....-.+.-..|..-...|++-+.+|.+.+-=+.+..
T Consensus 296 ~~~~~~~llV~t~t~~LlVy~d~~L~WsA~l~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGTdP 363 (418)
T PF14727_consen 296 EPSTRLNLLVGTHTGTLLVYEDTTLVWSAQLPHVPVALSVANFNGLKGLIVSLSDEGQLSVSYLGTDP 363 (418)
T ss_pred CCCCceEEEEEecCCeEEEEeCCeEEEecCCCCCCEEEEecccCCCCceEEEEcCCCcEEEEEeCCCC
Confidence 11122359999999999999866544433331111122222333345688999999999988776654
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=96.29 E-value=1.8 Score=45.24 Aligned_cols=175 Identities=14% Similarity=0.121 Sum_probs=83.5
Q ss_pred CCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcC---C-cEEEEeCCC--CcEEEEec--CCCcEEEEEEe
Q 005352 374 DKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSID---G-KVRIWAVLS--CHVVDWVD--IRQIVTAVCYR 445 (701)
Q Consensus 374 dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~d---g-~v~iwd~~~--~~~~~~~~--~~~~i~~i~~s 445 (701)
...|.--|+.+++....+.....+..+.|+|.++.+|+-|-.. . .-|||-+++ ........ ....+..=-|.
T Consensus 167 ~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~ 246 (386)
T PF14583_consen 167 HCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWV 246 (386)
T ss_dssp -EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-
T ss_pred CceEEEEECCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCccccccccc
Confidence 3456667889998888888888899999999777777766532 2 136775543 22222222 22345555688
Q ss_pred eCCCeEEEEec-----CCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCC-----------
Q 005352 446 PDGQGGIVGSM-----MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADS----------- 509 (701)
Q Consensus 446 p~g~~l~~gs~-----dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg----------- 509 (701)
|||..|.--+. +..|.-+|+.+......... .....+..++ ++.+++-=+.|.
T Consensus 247 ~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~----------p~~~H~~ss~-Dg~L~vGDG~d~p~~v~~~~~~~ 315 (386)
T PF14583_consen 247 PDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEM----------PWCSHFMSSP-DGKLFVGDGGDAPVDVADAGGYK 315 (386)
T ss_dssp TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE-----------SEEEEEE-T-TSSEEEEEE--------------
T ss_pred CCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeC----------CceeeeEEcC-CCCEEEecCCCCCccccccccce
Confidence 88886655322 33466777777654321111 1123344444 555554433332
Q ss_pred -----cEEEEeCCcccee-eecc-------cC--CCCeEEEEEecCCCEEE-EEeCCCcEEEEeCC
Q 005352 510 -----QVRILQGPNVIGK-YKGL-------RR--SGNQLSACFTSDGKHIV-SAGEDSNVYMWNCI 559 (701)
Q Consensus 510 -----~I~iwd~~~~~~~-~~~~-------~~--~~~v~~l~~s~dg~~l~-sgs~Dg~I~iWd~~ 559 (701)
-|++++....... +..+ .+ ...=....|+|||++|+ ++...|...||-++
T Consensus 316 ~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~ 381 (386)
T PF14583_consen 316 IENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVE 381 (386)
T ss_dssp -----EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEEE
T ss_pred ecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEEe
Confidence 4556666532221 1000 00 11125688999998775 55567887777544
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.0061 Score=57.52 Aligned_cols=143 Identities=16% Similarity=-0.014 Sum_probs=81.0
Q ss_pred EEEEEcCCcEEEEeCCCCcEEE-E-ecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCC
Q 005352 410 FISGSIDGKVRIWAVLSCHVVD-W-VDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCK 487 (701)
Q Consensus 410 l~sgs~dg~v~iwd~~~~~~~~-~-~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~ 487 (701)
+..-+.+|.|+-++++..+... . .-+... .....-+..+++|+.+|.|.+|.......... .......
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d-------~~~s~~e 102 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSD-------RVCSGEE 102 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccchHHH-------hhhcccc
Confidence 4445668888888876543221 0 011111 11122356799999999999998863211110 0111122
Q ss_pred CeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCC-CCeEEEEEecCCCEEEEE--eCCCcEEEEeCCCCC
Q 005352 488 RITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRS-GNQLSACFTSDGKHIVSA--GEDSNVYMWNCIGHE 562 (701)
Q Consensus 488 ~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~-~~v~~l~~s~dg~~l~sg--s~Dg~I~iWd~~~~~ 562 (701)
.|.+..-.-+++.+..+++.++.|+.|+.......-....|. .++..+..+..+++|+.+ |.|..++.|++..-.
T Consensus 103 ~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~~ 180 (238)
T KOG2444|consen 103 SIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKIK 180 (238)
T ss_pred cceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhhh
Confidence 333333333355689999999999999987544333332244 455555555566666666 667777777765543
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=96.21 E-value=1.7 Score=44.09 Aligned_cols=234 Identities=10% Similarity=0.063 Sum_probs=123.9
Q ss_pred cCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecC
Q 005352 211 LNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDI 290 (701)
Q Consensus 211 ~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~ 290 (701)
..++.+++|+.+| +.+++..... ..... .+...|..|...|+-+.|+.-+ |+.+.++++..-........
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~-~~~~i-------~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~ 74 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPS-KPTRI-------LKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAP 74 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCc-cceeE-------eecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccc
Confidence 4567788887777 8888772111 11111 1334499999999876666654 49999999876542211100
Q ss_pred CCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEE--EecCC-e
Q 005352 291 PEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLS--WSKNN-Y 367 (701)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~--~s~~~-~ 367 (701)
...+ +. ............+..++ -...+ .
T Consensus 75 ~~~~--------------------~~----------------------------~~~~~~~~~~~~v~~f~~~~~~~~~~ 106 (275)
T PF00780_consen 75 LAFP--------------------KS----------------------------RSLPTKLPETKGVSFFAVNGGHEGSR 106 (275)
T ss_pred cccc--------------------cc----------------------------ccccccccccCCeeEEeeccccccce
Confidence 0000 00 00000001122233333 11223 4
Q ss_pred EEEEECCCcEEEEECCCC-----eeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCC------
Q 005352 368 LLSASIDKTVRLWRVGND-----HCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIR------ 436 (701)
Q Consensus 368 l~s~s~dg~I~iWd~~~~-----~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~------ 436 (701)
.+.....+.|.+|..... +..+.+.....+..++|. ++.++.|..+ ...+.|+.++....+....
T Consensus 107 ~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~---~~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~ 182 (275)
T PF00780_consen 107 RLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL---GNKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSF 182 (275)
T ss_pred EEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe---CCEEEEEeCC-ceEEEecCCCCceEEeCccCCcchh
Confidence 444455558888877553 466677788999999997 4677777754 4788999987766554322
Q ss_pred -------CcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCC
Q 005352 437 -------QIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADS 509 (701)
Q Consensus 437 -------~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg 509 (701)
.++..+.. +++.+|++- +..-.+.|.... ......+.. ......+.+.. .++++.+. +
T Consensus 183 ~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~~G~-~~r~~~i~W-------~~~p~~~~~~~---pyli~~~~-~ 247 (275)
T PF00780_consen 183 KSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNKNGE-PSRKSTIQW-------SSAPQSVAYSS---PYLIAFSS-N 247 (275)
T ss_pred hhcccCCCceEEEEe-CCceEEEEe--cceEEEEcCCCC-cCcccEEEc-------CCchhEEEEEC---CEEEEECC-C
Confidence 12333333 344555542 334444454432 211111111 12345566643 45555444 5
Q ss_pred cEEEEeCCccce
Q 005352 510 QVRILQGPNVIG 521 (701)
Q Consensus 510 ~I~iwd~~~~~~ 521 (701)
.|.||++.+...
T Consensus 248 ~iEV~~~~~~~l 259 (275)
T PF00780_consen 248 SIEVRSLETGEL 259 (275)
T ss_pred EEEEEECcCCcE
Confidence 599999886543
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.31 Score=54.86 Aligned_cols=185 Identities=12% Similarity=0.059 Sum_probs=95.7
Q ss_pred CC-eEEEEECC------CcEEEEECCCCeeeeeec--CCCCeEEEEEeeCCCCEEEEEEcCC-----cEEEEeCCCCcEE
Q 005352 365 NN-YLLSASID------KTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSIDG-----KVRIWAVLSCHVV 430 (701)
Q Consensus 365 ~~-~l~s~s~d------g~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~~~~~l~sgs~dg-----~v~iwd~~~~~~~ 430 (701)
++ .++.|+.+ ..+..||..+......-. ....-.+++.. ++.+.+.|+.++ .+..||..+.+-.
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~--~g~IYviGG~~~~~~~~sve~Ydp~~~~W~ 380 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI--DDTIYAIGGQNGTNVERTIECYTMGDDKWK 380 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE--CCEEEEECCcCCCCCCceEEEEECCCCeEE
Confidence 44 56666643 347788887775432222 11111122222 677888888764 4788998876543
Q ss_pred EEecCCCcEEEE-EEeeCCCeEEEEecCC-----------------------cEEEEECCCCeeeeeeeEEeecccCCCC
Q 005352 431 DWVDIRQIVTAV-CYRPDGQGGIVGSMMG-----------------------DCRFYNVSDNHLELDAEICVHSKKKAPC 486 (701)
Q Consensus 431 ~~~~~~~~i~~i-~~sp~g~~l~~gs~dg-----------------------~v~i~d~~~~~~~~~~~~~~~~~~~~~~ 486 (701)
.......+.... +..-+|+..++|+.++ .+..||..+++......+.. . .
T Consensus 381 ~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~-----~-r 454 (557)
T PHA02713 381 MLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWT-----G-T 454 (557)
T ss_pred ECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCc-----c-c
Confidence 322222211111 1123677777777542 47788888876643221110 0 0
Q ss_pred CCeeEEEEecCCCCEEEEEECC------CcEEEEeCCc-cc--eeeecccCCCCeEEEEEecCCCEEEEEeCCC--cEEE
Q 005352 487 KRITGFQFLPQDSSKVMVSCAD------SQVRILQGPN-VI--GKYKGLRRSGNQLSACFTSDGKHIVSAGEDS--NVYM 555 (701)
Q Consensus 487 ~~i~~l~~~p~~~~~l~~~s~d------g~I~iwd~~~-~~--~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg--~I~i 555 (701)
.. .+++.. ++.+.++|+.+ ..+..||..+ .. ..............+. -+|+..++|+.|| .+..
T Consensus 455 ~~-~~~~~~--~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~--~~~~iyv~Gg~~~~~~~e~ 529 (557)
T PHA02713 455 IR-PGVVSH--KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL--HDNTIMMLHCYESYMLQDT 529 (557)
T ss_pred cc-CcEEEE--CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE--ECCEEEEEeeecceeehhh
Confidence 11 122222 46777777754 2356788764 22 1111111112222222 3778888999888 6677
Q ss_pred EeCCCCC
Q 005352 556 WNCIGHE 562 (701)
Q Consensus 556 Wd~~~~~ 562 (701)
||..+.+
T Consensus 530 yd~~~~~ 536 (557)
T PHA02713 530 FNVYTYE 536 (557)
T ss_pred cCccccc
Confidence 7766665
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.49 Score=51.21 Aligned_cols=133 Identities=14% Similarity=0.116 Sum_probs=66.4
Q ss_pred C-eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCC------------cEEEE
Q 005352 366 N-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSC------------HVVDW 432 (701)
Q Consensus 366 ~-~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~------------~~~~~ 432 (701)
| .|+..+ ++.|.+||+.+++.++.+.... |..+.|++ ++.+++..+.+ .+.|++.... .....
T Consensus 117 G~LL~~~~-~~~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~-~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~ 192 (443)
T PF04053_consen 117 GNLLGVKS-SDFICFYDWETGKLIRRIDVSA-VKYVIWSD-DGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELI 192 (443)
T ss_dssp SSSEEEEE-TTEEEEE-TTT--EEEEESS-E--EEEEE-T-TSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEE
T ss_pred CcEEEEEC-CCCEEEEEhhHcceeeEEecCC-CcEEEEEC-CCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEE
Confidence 6 444444 4489999999999999998664 89999999 88999888754 6888876544 33333
Q ss_pred ecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEE
Q 005352 433 VDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVR 512 (701)
Q Consensus 433 ~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~ 512 (701)
......|.+.+|..+ .++-.+.. .++. +-.+...... ....++.-+.+.| ..+.+.....|+.|.
T Consensus 193 ~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~---------~ld~~~yllgy~~-~~~~ly~~Dr~~~v~ 257 (443)
T PF04053_consen 193 HEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIA---------HLDKPLYLLGYLP-KENRLYLIDRDGNVI 257 (443)
T ss_dssp EEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEE---------E-SS--EEEEEET-TTTEEEEE-TT--EE
T ss_pred EEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEE---------EcCCceEEEEEEc-cCCEEEEEECCCCEE
Confidence 333667888888755 33333332 4444 3223221100 0112344444454 345555555666666
Q ss_pred EEeCC
Q 005352 513 ILQGP 517 (701)
Q Consensus 513 iwd~~ 517 (701)
.+.+.
T Consensus 258 ~~~ld 262 (443)
T PF04053_consen 258 SYELD 262 (443)
T ss_dssp EEE--
T ss_pred EEEEC
Confidence 55544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.25 Score=53.22 Aligned_cols=155 Identities=14% Similarity=0.187 Sum_probs=88.5
Q ss_pred CCCeEEEEEeeCCCCEEEEEE---cCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeC----CCeEEEEecCCcEEEEECC
Q 005352 394 SNYVTCVHFNPVDDNYFISGS---IDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPD----GQGGIVGSMMGDCRFYNVS 466 (701)
Q Consensus 394 ~~~V~~l~f~p~~~~~l~sgs---~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~----g~~l~~gs~dg~v~i~d~~ 466 (701)
-.++..++|. ||+.++-.. .+|.+++=|. . .++.-..|..++|.|- ...+++.-....|.+|.+.
T Consensus 19 iHPvhGlaWT--DGkqVvLT~L~l~~gE~kfGds---~---viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~ 90 (671)
T PF15390_consen 19 IHPVHGLAWT--DGKQVVLTDLQLHNGEPKFGDS---K---VIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC 90 (671)
T ss_pred hccccceEec--CCCEEEEEeeeeeCCccccCCc---c---EeeccceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence 3578899997 566555432 2333333221 2 2333456899999994 3356666677899999986
Q ss_pred CC-----eeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceee-ecccCCCCeEEEEEecC
Q 005352 467 DN-----HLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKY-KGLRRSGNQLSACFTSD 540 (701)
Q Consensus 467 ~~-----~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~-~~~~~~~~v~~l~~s~d 540 (701)
.. ++.....-.+.. ...---.++.|+| ....|++-.....-.++++....... .-....+.|.|.+|.+|
T Consensus 91 ~s~~e~~K~l~sQtcEi~e---~~pvLpQGCVWHP-k~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~D 166 (671)
T PF15390_consen 91 PSTTERNKLLMSQTCEIRE---PFPVLPQGCVWHP-KKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKD 166 (671)
T ss_pred cCccccccceeeeeeeccC---CcccCCCcccccC-CCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCc
Confidence 32 222221111111 1111235678999 55666655554444455554222111 12246788999999999
Q ss_pred CCEEEEEe-CCCcEEEEeCCC
Q 005352 541 GKHIVSAG-EDSNVYMWNCIG 560 (701)
Q Consensus 541 g~~l~sgs-~Dg~I~iWd~~~ 560 (701)
|+.|+.+- ..=.-||||-..
T Consensus 167 G~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 167 GQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred CCEEEEEeCCeEEEEEecCch
Confidence 99887763 334578898543
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.89 E-value=1.9 Score=42.91 Aligned_cols=163 Identities=10% Similarity=0.169 Sum_probs=101.6
Q ss_pred ceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEE
Q 005352 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (701)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (701)
+.+.+-+..|.++.|+|+.+.|++......-.||=..+|+.+.++.+...
T Consensus 79 kpi~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~------------------------------ 128 (316)
T COG3204 79 KPILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGF------------------------------ 128 (316)
T ss_pred cccccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccccc------------------------------
Confidence 44556666799999999999999888888888887777877666543221
Q ss_pred eeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeee----------eeec
Q 005352 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCL----------RVFP 392 (701)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~----------~~~~ 392 (701)
..--.|.|..+| +.++--.++.+.++.+.....+ ....
T Consensus 129 -------------------------------~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~ 177 (316)
T COG3204 129 -------------------------------SDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTN 177 (316)
T ss_pred -------------------------------CChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccC
Confidence 122344555555 4444445666666665544221 1112
Q ss_pred C-CCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCc-EE--E-EecC-------CCcEEEEEEeeC-CCeEEEEecCCc
Q 005352 393 H-SNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH-VV--D-WVDI-------RQIVTAVCYRPD-GQGGIVGSMMGD 459 (701)
Q Consensus 393 h-~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~-~~--~-~~~~-------~~~i~~i~~sp~-g~~l~~gs~dg~ 459 (701)
+ +...-.++|.| .+..|+.+-.-.-+.||.+.... .. . ...+ -..+.++.|++. +..++.+..++.
T Consensus 178 k~N~GfEGlA~d~-~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~ 256 (316)
T COG3204 178 KKNKGFEGLAWDP-VDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRR 256 (316)
T ss_pred CCCcCceeeecCC-CCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCce
Confidence 3 56678999999 66666666666677777665332 11 1 1111 124677888874 555666666777
Q ss_pred EEEEECCCC
Q 005352 460 CRFYNVSDN 468 (701)
Q Consensus 460 v~i~d~~~~ 468 (701)
+.-.|....
T Consensus 257 l~Evd~~G~ 265 (316)
T COG3204 257 LLEVDLSGE 265 (316)
T ss_pred EEEEecCCC
Confidence 777777654
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.88 E-value=4.7 Score=46.50 Aligned_cols=331 Identities=14% Similarity=0.110 Sum_probs=159.0
Q ss_pred eecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeee
Q 005352 209 VRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEV 288 (701)
Q Consensus 209 ~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~ 288 (701)
+..++...+.+..+|.+...-..........+....++-+-..-..|+.+-++| .|..|+.-|.=++-.+.+......+
T Consensus 265 v~~~~~~yLl~d~~G~Lf~l~l~~~~e~~s~~~lkve~lge~siassi~~L~ng-~lFvGS~~gdSqLi~L~~e~d~gsy 343 (1096)
T KOG1897|consen 265 VDLQGSRYLLGDEDGMLFKLLLSHTGETVSGLDLKVEYLGETSIASSINYLDNG-VLFVGSRFGDSQLIKLNTEPDVGSY 343 (1096)
T ss_pred ccCCccEEEEecCCCcEEEEEeecccccccceEEEEEecCCcchhhhhhcccCc-eEEEeccCCceeeEEccccCCCCch
Confidence 344555566677777665554432222222212222334455556677776666 7888888776666665443211000
Q ss_pred cCCCCCCceeEEeeccCCCcceee---ecc-ccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEE--E
Q 005352 289 DIPEIDPSCIYFTVNHLSELKPLF---MDK-EKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLS--W 362 (701)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~--~ 362 (701)
. .+.-...+...+..+. .+. ....++.......++...++.+.+ .+.+-....+.| -..++.+. +
T Consensus 344 ~-------~ilet~~NLgPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi-~I~e~A~i~l~G-ikg~w~lk~~v 414 (1096)
T KOG1897|consen 344 V-------VILETFVNLGPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNGI-GIDELASIDLPG-IKGMWSLKSMV 414 (1096)
T ss_pred h-------hhhhhcccccceeeEEEEeccccCCceEEEEeCCCCCCcEEEEeccc-ccceeeEeecCC-ccceeEeeccc
Confidence 0 0000000111111111 111 112222222222333333322221 111222233444 34455555 3
Q ss_pred ecC--CeEEEEECCCcEEEEECCCC-eeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcE
Q 005352 363 SKN--NYLLSASIDKTVRLWRVGND-HCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIV 439 (701)
Q Consensus 363 s~~--~~l~s~s~dg~I~iWd~~~~-~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i 439 (701)
.++ .+|+.+--+ .-++..+... +.............+..+...++.|+-.. ...||+++-. +....|.. ...+
T Consensus 415 ~~~~d~ylvlsf~~-eTrvl~i~~e~ee~~~~gf~~~~~Tif~S~i~g~~lvQvT-s~~iRl~ss~-~~~~~W~~-p~~~ 490 (1096)
T KOG1897|consen 415 DENYDNYLVLSFIS-ETRVLNISEEVEETEDPGFSTDEQTIFCSTINGNQLVQVT-SNSIRLVSSA-GLRSEWRP-PGKI 490 (1096)
T ss_pred cccCCcEEEEEecc-ceEEEEEccceEEeccccccccCceEEEEccCCceEEEEe-cccEEEEcch-hhhhcccC-CCce
Confidence 332 244443333 2333443322 11111122333444444444555555444 3458888765 33334443 3445
Q ss_pred EEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecC--CCC---EEEEEECCCcEEEE
Q 005352 440 TAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQ--DSS---KVMVSCADSQVRIL 514 (701)
Q Consensus 440 ~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~--~~~---~l~~~s~dg~I~iw 514 (701)
+....+.+...+++++.++.+...++....+.... +......|.|+.++|- +.+ ++++|..+..+.+.
T Consensus 491 ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~-------~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l 563 (1096)
T KOG1897|consen 491 TIGVVSANASQVVVAGGGLALFYLEIEDGGLREVS-------HKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMIL 563 (1096)
T ss_pred EEEEEeecceEEEEecCccEEEEEEeeccceeeee-------eheecceeEEEecccCCCCCCcceEEEEEeecceEEEE
Confidence 55555556667777777777777777665532111 2223466889988874 334 88888887776664
Q ss_pred eC-Cccceee----ecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 005352 515 QG-PNVIGKY----KGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIG 560 (701)
Q Consensus 515 d~-~~~~~~~----~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~ 560 (701)
-. .+..... ....-...|.-..|-.|..||.++..||.+..|.++.
T Consensus 564 ~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~ 614 (1096)
T KOG1897|consen 564 TFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDI 614 (1096)
T ss_pred EECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEc
Confidence 32 2222111 1111234566666777789999999999998776544
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.51 Score=53.14 Aligned_cols=184 Identities=11% Similarity=0.074 Sum_probs=98.5
Q ss_pred cCeEEEEEecCC-eEEEEE------CCC--cEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcC---------
Q 005352 355 GEILDLSWSKNN-YLLSAS------IDK--TVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSID--------- 416 (701)
Q Consensus 355 ~~I~~l~~s~~~-~l~s~s------~dg--~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~d--------- 416 (701)
..+...+++|++ .++..- .|. .|.+++... .. ..+......+.-.|+| ++..+++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~-~~lt~g~~~t~PsWsp-DG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VA-VQVLEGHSLTRPSWSL-DADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cc-eeeecCCCCCCceECC-CCCceEEEecCcceEEEecc
Confidence 467888999999 444333 243 455555422 22 3332233478888999 87777766432
Q ss_pred ---CcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEE---EECCCCeeeeeeeEEeecccCCCCCCee
Q 005352 417 ---GKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRF---YNVSDNHLELDAEICVHSKKKAPCKRIT 490 (701)
Q Consensus 417 ---g~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i---~d~~~~~~~~~~~~~~~~~~~~~~~~i~ 490 (701)
+.+.+.++..+.... .....|..+.|+|||..++... +|.|.+ -....+...+.....+ .......+.
T Consensus 427 ~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l---~~~l~~~~~ 500 (591)
T PRK13616 427 PATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREV---GPGLGDTAV 500 (591)
T ss_pred CCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEe---ecccCCccc
Confidence 223333443333322 3356799999999999988866 477776 3433443222111111 111223357
Q ss_pred EEEEecCCCCEEEEEECCCcEEEEe--CCccceee-ecccCCCCeEEEEEecCCCEEEEEeCCC
Q 005352 491 GFQFLPQDSSKVMVSCADSQVRILQ--GPNVIGKY-KGLRRSGNQLSACFTSDGKHIVSAGEDS 551 (701)
Q Consensus 491 ~l~~~p~~~~~l~~~s~dg~I~iwd--~~~~~~~~-~~~~~~~~v~~l~~s~dg~~l~sgs~Dg 551 (701)
.+.|.+ ++. |+++..++...+|. +....... ........+..++-+++ .|+.+..+|
T Consensus 501 ~l~W~~-~~~-L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g 560 (591)
T PRK13616 501 SLDWRT-GDS-LVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARA 560 (591)
T ss_pred cceEec-CCE-EEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCc
Confidence 788998 445 44555544444554 33222221 22223556677766653 455555566
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.0047 Score=68.55 Aligned_cols=139 Identities=12% Similarity=0.114 Sum_probs=76.6
Q ss_pred CCcEEEEeCCCCcE--EEEecCCCcEEEEEEee-CCCeEEEEecCCcEEEEECCC--CeeeeeeeEEeecccCCCCCCee
Q 005352 416 DGKVRIWAVLSCHV--VDWVDIRQIVTAVCYRP-DGQGGIVGSMMGDCRFYNVSD--NHLELDAEICVHSKKKAPCKRIT 490 (701)
Q Consensus 416 dg~v~iwd~~~~~~--~~~~~~~~~i~~i~~sp-~g~~l~~gs~dg~v~i~d~~~--~~~~~~~~~~~~~~~~~~~~~i~ 490 (701)
.+.+++-+...... .-..+..+.+..+.|-. +...+. -.-|.+.+|++.- +++.....+.+..........|.
T Consensus 110 ~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~ 187 (1283)
T KOG1916|consen 110 ENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVS 187 (1283)
T ss_pred hhhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceee
Confidence 45566666654332 11223455566666643 111111 2336788888764 33333333333333333333344
Q ss_pred EEEEecCCCCEEEEEECCCcEEEEeCCccce-eeecccCCCCeEEEE-----------EecCCCEEEEEeCCCcEEEEeC
Q 005352 491 GFQFLPQDSSKVMVSCADSQVRILQGPNVIG-KYKGLRRSGNQLSAC-----------FTSDGKHIVSAGEDSNVYMWNC 558 (701)
Q Consensus 491 ~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~-~~~~~~~~~~v~~l~-----------~s~dg~~l~sgs~Dg~I~iWd~ 558 (701)
...|.+ +.-++..+-.++.|++........ .+.. |...++.++ .+|||..++++..||.+++|.+
T Consensus 188 wcp~~~-~~~~ic~~~~~~~i~lL~~~ra~~~l~rs--Hs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 188 WCPIAV-NKVYICYGLKGGEIRLLNINRALRSLFRS--HSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI 264 (1283)
T ss_pred eccccc-ccceeeeccCCCceeEeeechHHHHHHHh--cCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence 344444 446677777789999987654332 2232 444444333 6889999999999999888875
Q ss_pred C
Q 005352 559 I 559 (701)
Q Consensus 559 ~ 559 (701)
.
T Consensus 265 y 265 (1283)
T KOG1916|consen 265 Y 265 (1283)
T ss_pred e
Confidence 4
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.091 Score=60.40 Aligned_cols=125 Identities=8% Similarity=0.025 Sum_probs=86.9
Q ss_pred CcEEEEEEeeCCCeEEEEecC--CcEEEEECCCCeeee---eeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcE
Q 005352 437 QIVTAVCYRPDGQGGIVGSMM--GDCRFYNVSDNHLEL---DAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQV 511 (701)
Q Consensus 437 ~~i~~i~~sp~g~~l~~gs~d--g~v~i~d~~~~~~~~---~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I 511 (701)
-++..+...+|+...++.... -.|..||++.-.... ...++.+...........++.|+|.-....++...|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 456666667777665554433 368899997643221 222222222333445567888999767778888999999
Q ss_pred EEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 005352 512 RILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGH 561 (701)
Q Consensus 512 ~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~ 561 (701)
++..+...............+++++|+|.|+.++.|-..|++.-|...-.
T Consensus 181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le 230 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE 230 (1405)
T ss_pred hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccc
Confidence 99887755554444446678899999999999999999999999976543
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=95.45 E-value=4.2 Score=42.94 Aligned_cols=288 Identities=14% Similarity=0.161 Sum_probs=133.8
Q ss_pred ccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEE
Q 005352 221 KVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYF 300 (701)
Q Consensus 221 ~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~ 300 (701)
..+.+.||++....... +......+....|||+|+++|-.. ++.|.+++..++... .+.... ...+..
T Consensus 21 ~~~~y~i~d~~~~~~~~--------l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~-~lT~dg--~~~i~n 88 (353)
T PF00930_consen 21 FKGDYYIYDIETGEITP--------LTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQET-QLTTDG--EPGIYN 88 (353)
T ss_dssp EEEEEEEEETTTTEEEE--------SS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEE-ESES----TTTEEE
T ss_pred cceeEEEEecCCCceEE--------CcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeE-Eecccc--ceeEEc
Confidence 45678888876532211 111256788999999999999886 578999988776432 222111 111111
Q ss_pred eec------c-CCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCcc---CeEEEEEecCC-eEE
Q 005352 301 TVN------H-LSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSG---EILDLSWSKNN-YLL 369 (701)
Q Consensus 301 ~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~I~~l~~s~~~-~l~ 369 (701)
... . ...-..+.+++++..+....-.......+ .+..+..... .+..+.+-.-| .-.
T Consensus 89 G~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~------------~~~~~~~~~~~yp~~~~~~YPk~G~~np 156 (353)
T PF00930_consen 89 GVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEY------------PLPDYSPPDSQYPEVESIRYPKAGDPNP 156 (353)
T ss_dssp SB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EE------------EEEEESSSTESS-EEEEEE--BTTS---
T ss_pred CccceeccccccccccceEECCCCCEEEEEEECCcCCceE------------EeeccCCccccCCcccccccCCCCCcCC
Confidence 000 0 12223344444443333221111111100 0111111111 34444443333 111
Q ss_pred EEECCCcEEEEECCCCeeeee--e----cCCCCeEEEEEeeCCCCEEEEEE--cCC---cEEEEeCCCCcEE--EEecCC
Q 005352 370 SASIDKTVRLWRVGNDHCLRV--F----PHSNYVTCVHFNPVDDNYFISGS--IDG---KVRIWAVLSCHVV--DWVDIR 436 (701)
Q Consensus 370 s~s~dg~I~iWd~~~~~~~~~--~----~h~~~V~~l~f~p~~~~~l~sgs--~dg---~v~iwd~~~~~~~--~~~~~~ 436 (701)
.-.+.|+|+.+++.... . .....+..+.|.+ ++..|+..- .+. .+.++|..++... ......
T Consensus 157 ----~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~-d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~ 231 (353)
T PF00930_consen 157 ----RVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSP-DGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSD 231 (353)
T ss_dssp ----EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEE-TTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESS
T ss_pred ----ceEEEEEECCCCcEEEeeeccccCCCccCcccceecC-CCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCC
Confidence 11366788888765321 1 2456789999999 777444333 222 3667788766433 222222
Q ss_pred Cc---EEEEEEe-eCCCe-EEEEecCCcEEE--EECCCCeeeeeeeEEeecccCCCCCCeeE-EEEecCCCCEEEEEECC
Q 005352 437 QI---VTAVCYR-PDGQG-GIVGSMMGDCRF--YNVSDNHLELDAEICVHSKKKAPCKRITG-FQFLPQDSSKVMVSCAD 508 (701)
Q Consensus 437 ~~---i~~i~~s-p~g~~-l~~gs~dg~v~i--~d~~~~~~~~~~~~~~~~~~~~~~~~i~~-l~~~p~~~~~l~~~s~d 508 (701)
.. ...+.+. +++.. +.....+|.-+| ++...+.... .....-.|+. +.+.+.++.+++++..+
T Consensus 232 ~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~---------lT~G~~~V~~i~~~d~~~~~iyf~a~~~ 302 (353)
T PF00930_consen 232 GWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQ---------LTSGDWEVTSILGWDEDNNRIYFTANGD 302 (353)
T ss_dssp SSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEE---------SS-SSS-EEEEEEEECTSSEEEEEESSG
T ss_pred cceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceec---------cccCceeecccceEcCCCCEEEEEecCC
Confidence 22 2244444 55554 444556666554 4555443211 1222344544 56667545555566553
Q ss_pred ----CcEEEEeCC-ccceeeecccCCCCeEEEEEecCCCEEEEE
Q 005352 509 ----SQVRILQGP-NVIGKYKGLRRSGNQLSACFTSDGKHIVSA 547 (701)
Q Consensus 509 ----g~I~iwd~~-~~~~~~~~~~~~~~v~~l~~s~dg~~l~sg 547 (701)
..|+..++. ......-. .....-..+.|||+|++++-.
T Consensus 303 ~p~~r~lY~v~~~~~~~~~~LT-~~~~~~~~~~~Spdg~y~v~~ 345 (353)
T PF00930_consen 303 NPGERHLYRVSLDSGGEPKCLT-CEDGDHYSASFSPDGKYYVDT 345 (353)
T ss_dssp GTTSBEEEEEETTETTEEEESS-TTSSTTEEEEE-TTSSEEEEE
T ss_pred CCCceEEEEEEeCCCCCeEecc-CCCCCceEEEECCCCCEEEEE
Confidence 245555555 22221111 111112689999999988754
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.43 E-value=2.2 Score=45.62 Aligned_cols=95 Identities=16% Similarity=0.229 Sum_probs=64.5
Q ss_pred EEEECCCcEEEEECCCCee--eee-----ecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEE-EEecCCCcEE
Q 005352 369 LSASIDKTVRLWRVGNDHC--LRV-----FPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVT 440 (701)
Q Consensus 369 ~s~s~dg~I~iWd~~~~~~--~~~-----~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~-~~~~~~~~i~ 440 (701)
+.|-.|..|.-||.+-... +.. +.......|++-. ...++++|+.+|.||+||--..+.. .+.+...+|.
T Consensus 398 lvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT--~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~ 475 (644)
T KOG2395|consen 398 LVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATT--ESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIK 475 (644)
T ss_pred EEeecCCceEEecccccCcceeeeeeccccccccccceeeec--CCceEEEeecCCcEEeehhhhhhhhhcccccCCcee
Confidence 3455677888898863322 111 2233445666554 4668999999999999997433333 4556788999
Q ss_pred EEEEeeCCCeEEEEecCCcEEEEECC
Q 005352 441 AVCYRPDGQGGIVGSMMGDCRFYNVS 466 (701)
Q Consensus 441 ~i~~sp~g~~l~~gs~dg~v~i~d~~ 466 (701)
.|..+.+|++|++.+ +..+.+.++.
T Consensus 476 hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 476 HVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred eEEeeccCcEEEEec-ccEEEEEEEe
Confidence 999999999987665 4566666654
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.37 Score=47.24 Aligned_cols=211 Identities=18% Similarity=0.218 Sum_probs=110.7
Q ss_pred CceeccCCCcEEEEEEccCCCEEEEEeCC-----CcEEEEEeecC-eeeeeecCCCCCCceeEEeeccCCCcceee---e
Q 005352 243 GQEIQAHDGSILTMKFSPDGQYLASAGDD-----GVVRLWQVVED-ERLTEVDIPEIDPSCIYFTVNHLSELKPLF---M 313 (701)
Q Consensus 243 ~~~l~~H~~~I~~l~fspdg~~Lasgs~D-----g~I~iWd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 313 (701)
.+.+-+|. .|||||.+|...-.| |.|-|||...+ +.+.++..+...+.-+.+..++...+..-. .
T Consensus 112 ~RHfyGHG------vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIet 185 (366)
T COG3490 112 GRHFYGHG------VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIET 185 (366)
T ss_pred Cceeeccc------ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceec
Confidence 34556675 689999998765443 78999998754 345555555555544444443321110000 0
Q ss_pred c-cccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCCeEEEEEC-CC-----cEEEEECCCCe
Q 005352 314 D-KEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASI-DK-----TVRLWRVGNDH 386 (701)
Q Consensus 314 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~l~s~s~-dg-----~I~iWd~~~~~ 386 (701)
. ..+...+. -..-...++..+.....+.+|...--.-+...|..++.-++|.+..+.. -| --.+=....++
T Consensus 186 hpdfgR~~lN--ldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~ 263 (366)
T COG3490 186 HPDFGRTELN--LDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGE 263 (366)
T ss_pred ccccCccccc--hhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCC
Confidence 0 00000000 0111112222222222333332222224556688888888884444332 11 11111223344
Q ss_pred eeeeec--------CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecCC
Q 005352 387 CLRVFP--------HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMG 458 (701)
Q Consensus 387 ~~~~~~--------h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg 458 (701)
.+..+. ..++|-+|+.+..++-..++.-..+...+||..++.++......+ +.-..+....+++.+.+|
T Consensus 264 ~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~d---aaGva~~~~gf~vssg~G 340 (366)
T COG3490 264 PLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALPD---AAGVAAAKGGFAVSSGQG 340 (366)
T ss_pred cCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccccc---cccceeccCceEEecCCc
Confidence 444443 456888999987344444455556678899999999886543322 122334566788888899
Q ss_pred cEEEEE
Q 005352 459 DCRFYN 464 (701)
Q Consensus 459 ~v~i~d 464 (701)
.+.+|.
T Consensus 341 ~~~~~s 346 (366)
T COG3490 341 RIIFYS 346 (366)
T ss_pred eEEecc
Confidence 999884
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=95.30 E-value=2.4 Score=48.82 Aligned_cols=34 Identities=26% Similarity=0.443 Sum_probs=28.5
Q ss_pred CCccCeEEEEEecCC----eEEEEECCCcEEEEECCCC
Q 005352 352 GHSGEILDLSWSKNN----YLLSASIDKTVRLWRVGND 385 (701)
Q Consensus 352 ~h~~~I~~l~~s~~~----~l~s~s~dg~I~iWd~~~~ 385 (701)
.+...|..+.|+|.+ .|+.-..|+++|+||+...
T Consensus 144 ~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 144 NSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred CCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 455789999999963 8999999999999999653
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=95.27 E-value=3.5 Score=40.86 Aligned_cols=185 Identities=7% Similarity=0.066 Sum_probs=108.9
Q ss_pred cCeEEEEEecCC-eEEEEECCC--cEEEEECCCCeeeeeec--CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcE
Q 005352 355 GEILDLSWSKNN-YLLSASIDK--TVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHV 429 (701)
Q Consensus 355 ~~I~~l~~s~~~-~l~s~s~dg--~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~ 429 (701)
.....+.|..++ ++-+.+.-| .|+.+|+.+++.+.... ..-.--.++.. ++.++.-.-.++...+||..+-+.
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~ 122 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKK 122 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEE
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceE
Confidence 345678887777 666777666 69999999998877665 33334455554 455555666789999999999988
Q ss_pred EEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCC
Q 005352 430 VDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADS 509 (701)
Q Consensus 430 ~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg 509 (701)
+..+.....=..++ .+++.|+.......++++|..+-+......... .......++-+.+.. +.+.+=.-...
T Consensus 123 ~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~---~g~pv~~LNELE~i~--G~IyANVW~td 195 (264)
T PF05096_consen 123 IGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTD---NGRPVSNLNELEYIN--GKIYANVWQTD 195 (264)
T ss_dssp EEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EE---TTEE---EEEEEEET--TEEEEEETTSS
T ss_pred EEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEE---CCEECCCcEeEEEEc--CEEEEEeCCCC
Confidence 87777666667776 678889998888899999988765543333222 122334456666653 33333333344
Q ss_pred cEEEEeCCc-----------cceeeec----ccCCCCeEEEEEecCCCEEEEEe
Q 005352 510 QVRILQGPN-----------VIGKYKG----LRRSGNQLSACFTSDGKHIVSAG 548 (701)
Q Consensus 510 ~I~iwd~~~-----------~~~~~~~----~~~~~~v~~l~~s~dg~~l~sgs 548 (701)
.|...|..+ ....... .....-.+.+++.|..+.|...+
T Consensus 196 ~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 196 RIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred eEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 444445443 2211111 11235578999998776555444
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.059 Score=37.85 Aligned_cols=33 Identities=18% Similarity=0.360 Sum_probs=29.5
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCe
Q 005352 250 DGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDE 283 (701)
Q Consensus 250 ~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~ 283 (701)
...|.+++|+|...+||.|..||.|.++.+ +++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 456999999999999999999999999998 444
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.26 Score=56.61 Aligned_cols=79 Identities=15% Similarity=0.216 Sum_probs=54.0
Q ss_pred eeeecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeee
Q 005352 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLT 286 (701)
Q Consensus 207 ~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~ 286 (701)
.+...-...++.|+..|.|-..|+...-.. +... ..-+++|++++|+.+|..++.|-.+|.|.+||+..++.++
T Consensus 93 ~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~---~~~n---e~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~ 166 (1206)
T KOG2079|consen 93 ISSAIVVVPIVIGTSHGHVLLSDMTGNLGP---LHQN---ERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILK 166 (1206)
T ss_pred eeeeeeeeeEEEEcCchhhhhhhhhcccch---hhcC---CccCCcceeeEecCCCceeccccCCCcEEEEEccCCccee
Confidence 334444455667777777777765432111 1000 1136799999999999999999999999999999887665
Q ss_pred eecCC
Q 005352 287 EVDIP 291 (701)
Q Consensus 287 ~~~~~ 291 (701)
.+...
T Consensus 167 ~i~e~ 171 (1206)
T KOG2079|consen 167 VITEH 171 (1206)
T ss_pred eeeec
Confidence 55443
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=95.01 E-value=2.6 Score=44.07 Aligned_cols=183 Identities=13% Similarity=0.065 Sum_probs=85.8
Q ss_pred EEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEee-CCCCEEEEEEc----------------------
Q 005352 361 SWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNP-VDDNYFISGSI---------------------- 415 (701)
Q Consensus 361 ~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p-~~~~~l~sgs~---------------------- 415 (701)
.+++++ .++-......|+-.|+.+.+....+. ....+-...|.. .++..++-.-.
T Consensus 87 ~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p 166 (386)
T PF14583_consen 87 FLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARP 166 (386)
T ss_dssp EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC--
T ss_pred EEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCC
Confidence 345555 54444455678888888877665555 344444455542 23444332211
Q ss_pred CCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecCCc-----EEEEECCCCeeeeeeeEEeecccCCCCCCee
Q 005352 416 DGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGD-----CRFYNVSDNHLELDAEICVHSKKKAPCKRIT 490 (701)
Q Consensus 416 dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~-----v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~ 490 (701)
...|.--|+.+++...+......+..+.|+|....+++=+..|- -+||-+++..-... .++ .......+.
T Consensus 167 ~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~---~v~--~~~~~e~~g 241 (386)
T PF14583_consen 167 HCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVK---KVH--RRMEGESVG 241 (386)
T ss_dssp -EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---E---ESS-----TTEEEE
T ss_pred CceEEEEECCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcce---eee--cCCCCcccc
Confidence 13455568888888888888888999999997666666444331 35665543321110 011 112233344
Q ss_pred EEEEecCCCCEEEEEEC----CCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCC
Q 005352 491 GFQFLPQDSSKVMVSCA----DSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGED 550 (701)
Q Consensus 491 ~l~~~p~~~~~l~~~s~----dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~D 550 (701)
.=-|.|++..+...+.. +..|.-+|..+....... .......+-.++||++++-=+.|
T Consensus 242 HEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~--~~p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 242 HEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLM--EMPWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp EEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEE--EE-SEEEEEE-TTSSEEEEEE--
T ss_pred cccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEE--eCCceeeeEEcCCCCEEEecCCC
Confidence 44567743333333321 334555666654433211 12234566667899877754544
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=94.95 E-value=5.9 Score=42.08 Aligned_cols=98 Identities=11% Similarity=0.021 Sum_probs=55.5
Q ss_pred CeEEEEEecCCeEEEEECCCcEEEEECCCC-----e---eeeeecC-----CCCeEEEEEeeCCCCEEEEEEcC------
Q 005352 356 EILDLSWSKNNYLLSASIDKTVRLWRVGND-----H---CLRVFPH-----SNYVTCVHFNPVDDNYFISGSID------ 416 (701)
Q Consensus 356 ~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~-----~---~~~~~~h-----~~~V~~l~f~p~~~~~l~sgs~d------ 416 (701)
....|++.+++ |+.+......++.|.... + .+..+.. ......++|.| ++.+.++-+..
T Consensus 73 ~p~Gi~~~~~G-lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~~ 150 (367)
T TIGR02604 73 MVTGLAVAVGG-VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASKVT 150 (367)
T ss_pred CccceeEecCC-EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCceec
Confidence 45678888888 444444443334454321 1 1122221 34477899999 88776654421
Q ss_pred -------------CcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEe
Q 005352 417 -------------GKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGS 455 (701)
Q Consensus 417 -------------g~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs 455 (701)
|.|.-++..+++...+...-.....++|+|+|+.+++-.
T Consensus 151 ~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 151 RPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred cCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEEcc
Confidence 345555555554433333334467899999998876644
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=94.93 E-value=1 Score=50.81 Aligned_cols=158 Identities=9% Similarity=0.024 Sum_probs=85.2
Q ss_pred CCeEEEEEeeCCCCEEEEEE------cCC--cEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecCCc-EEEEEC
Q 005352 395 NYVTCVHFNPVDDNYFISGS------IDG--KVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGD-CRFYNV 465 (701)
Q Consensus 395 ~~V~~l~f~p~~~~~l~sgs------~dg--~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~-v~i~d~ 465 (701)
..+...+++| +++.++... .|. .|.+++... ....+.. ....+.-.|+|+|+.+++...... +++.+-
T Consensus 350 ~~vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~~~lt~-g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPLGG-VAVQVLE-GHSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECC-CCCEEEEEEeecCCCCCcceEEEEEeCCC-cceeeec-CCCCCCceECCCCCceEEEecCcceEEEecc
Confidence 4678899999 888877665 243 455556532 2233332 234888999999998887754322 333332
Q ss_pred CCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEE---EeCCccceee----ec-ccCCCCeEEEEE
Q 005352 466 SDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRI---LQGPNVIGKY----KG-LRRSGNQLSACF 537 (701)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~i---wd~~~~~~~~----~~-~~~~~~v~~l~~ 537 (701)
.......................|..+.|+| ++..++... +++|++ -........+ .. ......+.++.|
T Consensus 427 ~~~gql~~~~vd~ge~~~~~~g~Issl~wSp-DG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W 504 (591)
T PRK13616 427 PATGQLARTPVDASAVASRVPGPISELQLSR-DGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDW 504 (591)
T ss_pred CCCceEEEEeccCchhhhccCCCcCeEEECC-CCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceE
Confidence 2111111111100000112245799999999 666666655 477777 3322222112 11 112234688999
Q ss_pred ecCCCEEEEEeCCCcEEEEeC
Q 005352 538 TSDGKHIVSAGEDSNVYMWNC 558 (701)
Q Consensus 538 s~dg~~l~sgs~Dg~I~iWd~ 558 (701)
..++.++ .+..++...+|.+
T Consensus 505 ~~~~~L~-V~~~~~~~~v~~v 524 (591)
T PRK13616 505 RTGDSLV-VGRSDPEHPVWYV 524 (591)
T ss_pred ecCCEEE-EEecCCCCceEEE
Confidence 9998855 5555554445543
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=94.81 E-value=8.6 Score=43.01 Aligned_cols=97 Identities=8% Similarity=-0.009 Sum_probs=61.0
Q ss_pred CCcEEEEECCCCeeeeeecCC--C------------------------------Ce-EEEEEeeCCCCEEEEEEcC----
Q 005352 374 DKTVRLWRVGNDHCLRVFPHS--N------------------------------YV-TCVHFNPVDDNYFISGSID---- 416 (701)
Q Consensus 374 dg~I~iWd~~~~~~~~~~~h~--~------------------------------~V-~~l~f~p~~~~~l~sgs~d---- 416 (701)
+|.|..+|.++++.+..+... . .+ ..+.+.| ..++++.+..+
T Consensus 180 ~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~-~~~lvy~~tGnp~p~ 258 (527)
T TIGR03075 180 RGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDP-ETNLIYFGTGNPSPW 258 (527)
T ss_pred CcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcC-CCCeEEEeCCCCCCC
Confidence 689999999999988776411 0 00 1235555 44555554422
Q ss_pred -C-----------cEEEEeCCCCcEEEEe---cCC-------CcEEEEEEeeCCC---eEEEEecCCcEEEEECCCCeee
Q 005352 417 -G-----------KVRIWAVLSCHVVDWV---DIR-------QIVTAVCYRPDGQ---GGIVGSMMGDCRFYNVSDNHLE 471 (701)
Q Consensus 417 -g-----------~v~iwd~~~~~~~~~~---~~~-------~~i~~i~~sp~g~---~l~~gs~dg~v~i~d~~~~~~~ 471 (701)
+ .|.-.|+++++..-.+ .|. ....-+.+..+|+ .++.+..+|.+.+.|-.+++++
T Consensus 259 ~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 259 NSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred CCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 2 5666788888876222 121 1122233334676 7788999999999999998875
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=94.69 E-value=3 Score=44.05 Aligned_cols=95 Identities=20% Similarity=0.325 Sum_probs=52.8
Q ss_pred CCcEEEEECCCCeeeeeecCC---CCeEEEEEeeCC--CCE-EEEEEcCCcEEEEeC-CCCc-----EEEEec-------
Q 005352 374 DKTVRLWRVGNDHCLRVFPHS---NYVTCVHFNPVD--DNY-FISGSIDGKVRIWAV-LSCH-----VVDWVD------- 434 (701)
Q Consensus 374 dg~I~iWd~~~~~~~~~~~h~---~~V~~l~f~p~~--~~~-l~sgs~dg~v~iwd~-~~~~-----~~~~~~------- 434 (701)
..++.+||+.+.+.++++... ..+..|.|.. + ..+ |+.+....+|..|-- ..++ ++.+..
T Consensus 221 G~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH-~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~ 299 (461)
T PF05694_consen 221 GHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLH-DPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWI 299 (461)
T ss_dssp --EEEEEETTTTEEEEEEES-TTEEEEEEEEE-S-STT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS-
T ss_pred cCeEEEEECCCCcEeeEEecCCCCCceEEEEecC-CCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCccc
Confidence 468999999999999999743 3466677765 3 223 444445555555432 3332 222211
Q ss_pred ---C-------CCcEEEEEEeeCCCeEEEEec-CCcEEEEECCCCe
Q 005352 435 ---I-------RQIVTAVCYRPDGQGGIVGSM-MGDCRFYNVSDNH 469 (701)
Q Consensus 435 ---~-------~~~i~~i~~sp~g~~l~~gs~-dg~v~i~d~~~~~ 469 (701)
. ..-|+.|.++.|.++|.+... .|.|+.||+.+..
T Consensus 300 lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~ 345 (461)
T PF05694_consen 300 LPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPF 345 (461)
T ss_dssp --GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTT
T ss_pred ccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCC
Confidence 1 345899999999999988775 8999999998753
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.52 Score=54.30 Aligned_cols=96 Identities=18% Similarity=0.237 Sum_probs=70.9
Q ss_pred eEEEEECCCcEEEEECCCCee--eeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEec-CCCc---EE
Q 005352 367 YLLSASIDKTVRLWRVGNDHC--LRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVD-IRQI---VT 440 (701)
Q Consensus 367 ~l~s~s~dg~I~iWd~~~~~~--~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~-~~~~---i~ 440 (701)
.++.|+..|.|-..|+...-+ .+--...++|++++|+. ++..++.|-.+|.|.+||+..++..+.+. +..+ +.
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~-dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi 179 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQ-DGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVI 179 (1206)
T ss_pred eEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecC-CCceeccccCCCcEEEEEccCCcceeeeeecCCccceEE
Confidence 688888889998888766422 22223568999999998 99999999999999999999987775443 3344 33
Q ss_pred EEEEeeCCCeEEEEecCCcEEEEEC
Q 005352 441 AVCYRPDGQGGIVGSMMGDCRFYNV 465 (701)
Q Consensus 441 ~i~~sp~g~~l~~gs~dg~v~i~d~ 465 (701)
.+.+..++..++++...|. +|.+
T Consensus 180 ~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 180 FVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEEEeCCCcEEEEccCCCc--eEEE
Confidence 4445556677888888776 5554
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=94.59 E-value=1.4 Score=47.74 Aligned_cols=115 Identities=17% Similarity=0.254 Sum_probs=75.4
Q ss_pred CCccCeEEEEEecCC-----eEEEEECCCcEEEEECC-----CCeeeee----ec--CCCCeEEEEEeeCCCCEEEEEEc
Q 005352 352 GHSGEILDLSWSKNN-----YLLSASIDKTVRLWRVG-----NDHCLRV----FP--HSNYVTCVHFNPVDDNYFISGSI 415 (701)
Q Consensus 352 ~h~~~I~~l~~s~~~-----~l~s~s~dg~I~iWd~~-----~~~~~~~----~~--h~~~V~~l~f~p~~~~~l~sgs~ 415 (701)
|.-..|..+.|.|-+ .|++....+.|.||.+. +.+.+.. +. ..--...+.|+| ....|+.-..
T Consensus 54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP-k~~iL~VLT~ 132 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHP-KKAILTVLTA 132 (671)
T ss_pred eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccC-CCceEEEEec
Confidence 344568999999853 68888889999999875 2222221 11 112235677999 7777766554
Q ss_pred CCcEEEEeCC--CCcEEEEecCCCcEEEEEEeeCCCeEEEEecC-CcEEEEECCC
Q 005352 416 DGKVRIWAVL--SCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMM-GDCRFYNVSD 467 (701)
Q Consensus 416 dg~v~iwd~~--~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~d-g~v~i~d~~~ 467 (701)
...=.+++++ +.++..-+...+-|.|.||.+||+.|+++-.. =.-++||-..
T Consensus 133 ~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 133 RDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred CceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 4443455554 34455556778899999999999998887543 2345777543
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.15 Score=58.72 Aligned_cols=143 Identities=15% Similarity=0.104 Sum_probs=93.1
Q ss_pred CeEEEEEecCC---eEEEEECCCcEEEEECCCCeee--------ee----ecCCCCeEEEEEeeCCCCEEEEEEcCCcEE
Q 005352 356 EILDLSWSKNN---YLLSASIDKTVRLWRVGNDHCL--------RV----FPHSNYVTCVHFNPVDDNYFISGSIDGKVR 420 (701)
Q Consensus 356 ~I~~l~~s~~~---~l~s~s~dg~I~iWd~~~~~~~--------~~----~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~ 420 (701)
.|..+...++. .++..+.+-.|..||+++...- +. +.....+.++.|+|.-....+....|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 34444455555 3344444557889998654221 11 114456778999995556677788899999
Q ss_pred EEeCCCC-cEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCC
Q 005352 421 IWAVLSC-HVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDS 499 (701)
Q Consensus 421 iwd~~~~-~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~ 499 (701)
+..+... +.+.........++++|+|.|+.+++|-..|++..|...-... ..++........+|.+++|.. ..
T Consensus 182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik-----~~ip~Pp~~e~yrvl~v~Wl~-t~ 255 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIK-----SEIPEPPVEENYRVLSVTWLS-TQ 255 (1405)
T ss_pred hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeeccccee-----ecccCCCcCCCcceeEEEEec-ce
Confidence 9877543 2334456677899999999999999999999999987653211 122222233368899999987 33
Q ss_pred CEEEE
Q 005352 500 SKVMV 504 (701)
Q Consensus 500 ~~l~~ 504 (701)
.++++
T Consensus 256 eflvv 260 (1405)
T KOG3630|consen 256 EFLVV 260 (1405)
T ss_pred eEEEE
Confidence 44443
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.53 E-value=1.8 Score=48.67 Aligned_cols=181 Identities=10% Similarity=0.073 Sum_probs=87.7
Q ss_pred eEEEEECCC------cEEEEECCCCeeeeeecC--CCCeEEEEEeeCCCCEEEEEEcC-----CcEEEEeCCCCcEEEEe
Q 005352 367 YLLSASIDK------TVRLWRVGNDHCLRVFPH--SNYVTCVHFNPVDDNYFISGSID-----GKVRIWAVLSCHVVDWV 433 (701)
Q Consensus 367 ~l~s~s~dg------~I~iWd~~~~~~~~~~~h--~~~V~~l~f~p~~~~~l~sgs~d-----g~v~iwd~~~~~~~~~~ 433 (701)
.++.|+.++ .+..||..+.+....-.. ...-.+++. - ++.+++.|+.+ ..+..||..+.+-....
T Consensus 297 lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~-~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 374 (534)
T PHA03098 297 IYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV-F-NNRIYVIGGIYNSISLNTVESWKPGESKWREEP 374 (534)
T ss_pred EEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE-E-CCEEEEEeCCCCCEecceEEEEcCCCCceeeCC
Confidence 556665442 577888887765432221 111112222 2 67778888765 34778888776543322
Q ss_pred cCCCcE--EEEEEeeCCCeEEEEecC------CcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEE
Q 005352 434 DIRQIV--TAVCYRPDGQGGIVGSMM------GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVS 505 (701)
Q Consensus 434 ~~~~~i--~~i~~sp~g~~l~~gs~d------g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~ 505 (701)
....+. .++ ..-+++..+.|+.. ..+..||+.+++......+ .... .. .++... ++.+++.|
T Consensus 375 ~lp~~r~~~~~-~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~-----p~~r-~~-~~~~~~--~~~iyv~G 444 (534)
T PHA03098 375 PLIFPRYNPCV-VNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPL-----PISH-YG-GCAIYH--DGKIYVIG 444 (534)
T ss_pred CcCcCCccceE-EEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCC-----Cccc-cC-ceEEEE--CCEEEEEC
Confidence 211111 112 22356667777632 4588899887765432111 0000 11 112222 45677777
Q ss_pred ECC--------CcEEEEeCCcccee-eeccc-CCCCeEEEEEecCCCEEEEEeCC-----CcEEEEeCCCC
Q 005352 506 CAD--------SQVRILQGPNVIGK-YKGLR-RSGNQLSACFTSDGKHIVSAGED-----SNVYMWNCIGH 561 (701)
Q Consensus 506 s~d--------g~I~iwd~~~~~~~-~~~~~-~~~~v~~l~~s~dg~~l~sgs~D-----g~I~iWd~~~~ 561 (701)
+.+ ..+.+||..+..-. ..... .......+. .+++.++.|+.+ ..|.+||..+.
T Consensus 445 G~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 445 GISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI--FNNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred CccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE--ECCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 643 23778887642211 11110 111111122 266666777654 35677776554
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=94.53 E-value=7.1 Score=40.79 Aligned_cols=68 Identities=16% Similarity=0.125 Sum_probs=40.4
Q ss_pred CCeeEEEEecC------CCCEEEEEECCCcEEEEeCCccce---eeec-ccCCCCeEEEEEecCCCEEEEEeCCCcEE
Q 005352 487 KRITGFQFLPQ------DSSKVMVSCADSQVRILQGPNVIG---KYKG-LRRSGNQLSACFTSDGKHIVSAGEDSNVY 554 (701)
Q Consensus 487 ~~i~~l~~~p~------~~~~l~~~s~dg~I~iwd~~~~~~---~~~~-~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~ 554 (701)
..++++.|... .+.++++.-..+.|....+..... .... ......+..+++.|||.+.++...+|.|+
T Consensus 253 ~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 253 SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp --EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 56777777652 234555555567777776642211 1111 12334799999999999988888888875
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=94.51 E-value=1.6 Score=49.13 Aligned_cols=184 Identities=13% Similarity=0.142 Sum_probs=103.0
Q ss_pred eEEEEECC------CcEEEEECCCCeeeeee--cCCCCeEEEEEeeCCCCEEEEEEcC------CcEEEEeCCCCcEEEE
Q 005352 367 YLLSASID------KTVRLWRVGNDHCLRVF--PHSNYVTCVHFNPVDDNYFISGSID------GKVRIWAVLSCHVVDW 432 (701)
Q Consensus 367 ~l~s~s~d------g~I~iWd~~~~~~~~~~--~h~~~V~~l~f~p~~~~~l~sgs~d------g~v~iwd~~~~~~~~~ 432 (701)
.++.|+.+ ..+..+|..+++..... .....-.++++. ++.++++|+.| ..+..||..+.+-...
T Consensus 287 l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~ 364 (571)
T KOG4441|consen 287 LVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPV 364 (571)
T ss_pred EEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCCceecc
Confidence 56666666 36888998887544433 344445566665 57888999988 3477888887764332
Q ss_pred ecCCCcEEEEEE-eeCCCeEEEEecCCc-----EEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEE
Q 005352 433 VDIRQIVTAVCY-RPDGQGGIVGSMMGD-----CRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSC 506 (701)
Q Consensus 433 ~~~~~~i~~i~~-sp~g~~l~~gs~dg~-----v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s 506 (701)
......-..... .-+|...++|+.||. +..||..+++......+. ....+.....-++.+.++|+
T Consensus 365 a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~---------~~r~~~gv~~~~g~iYi~GG 435 (571)
T KOG4441|consen 365 APMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPML---------TRRSGHGVAVLGGKLYIIGG 435 (571)
T ss_pred CCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCC---------cceeeeEEEEECCEEEEEcC
Confidence 222222111211 226778888988865 778888887654322111 12233333333678888888
Q ss_pred CCC------cEEEEeCCccceeeecccCC-CCeEEEEEecCCCEEEEEeCCCc-----EEEEeCCCCC
Q 005352 507 ADS------QVRILQGPNVIGKYKGLRRS-GNQLSACFTSDGKHIVSAGEDSN-----VYMWNCIGHE 562 (701)
Q Consensus 507 ~dg------~I~iwd~~~~~~~~~~~~~~-~~v~~l~~s~dg~~l~sgs~Dg~-----I~iWd~~~~~ 562 (701)
.++ .+..||..+..-.....-.. ..-..++ .-++...+.||.|+. |..||..+.+
T Consensus 436 ~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~ 502 (571)
T KOG4441|consen 436 GDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVA-VLNGKIYVVGGFDGTSALSSVERYDPETNQ 502 (571)
T ss_pred cCCCccccceEEEEcCCCCceeecCCcccccccceEE-EECCEEEEECCccCCCccceEEEEcCCCCc
Confidence 654 35667755322211111011 1111122 236677778887763 5667765544
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.12 Score=36.32 Aligned_cols=32 Identities=13% Similarity=0.101 Sum_probs=29.0
Q ss_pred CCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 005352 528 RSGNQLSACFTSDGKHIVSAGEDSNVYMWNCI 559 (701)
Q Consensus 528 ~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~ 559 (701)
....|..++|+|...+||.++.||.|.+|.++
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 34578999999999999999999999999993
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=94.40 E-value=2.4 Score=45.33 Aligned_cols=147 Identities=14% Similarity=0.075 Sum_probs=92.3
Q ss_pred CCCEEEEEEcCCcEEEEeCCCCc-----EEEEecCCCcEEEEEEee-----CCCeEEEEecCCcEEEEECCCCe------
Q 005352 406 DDNYFISGSIDGKVRIWAVLSCH-----VVDWVDIRQIVTAVCYRP-----DGQGGIVGSMMGDCRFYNVSDNH------ 469 (701)
Q Consensus 406 ~~~~l~sgs~dg~v~iwd~~~~~-----~~~~~~~~~~i~~i~~sp-----~g~~l~~gs~dg~v~i~d~~~~~------ 469 (701)
+...+++|+..|.++||+..... ++-......+|..+.... +...|++ -.-..+.+|.+....
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g 114 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHG 114 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccC
Confidence 45689999999999999986543 334445678888887653 2234444 556788899883221
Q ss_pred --eeeeeeEEeecccCCCCCCeeEEEEecC----CCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCE
Q 005352 470 --LELDAEICVHSKKKAPCKRITGFQFLPQ----DSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKH 543 (701)
Q Consensus 470 --~~~~~~~~~~~~~~~~~~~i~~l~~~p~----~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~ 543 (701)
..+..... +. . ......+++-|. +..++.+-+.||.+.+|+-........... .--.-.+++.+.-..
T Consensus 115 ~~~~L~~~ye-h~-l---~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDs 188 (418)
T PF14727_consen 115 NQYQLELIYE-HS-L---QRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDS 188 (418)
T ss_pred cEEEEEEEEE-Ee-c---ccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCE
Confidence 11111111 11 1 122333444332 247888899999999999876543333221 222234678888889
Q ss_pred EEEEeCCCcEEEEeCC
Q 005352 544 IVSAGEDSNVYMWNCI 559 (701)
Q Consensus 544 l~sgs~Dg~I~iWd~~ 559 (701)
+++++.+..+.-|++.
T Consensus 189 fvt~sss~~l~~Yky~ 204 (418)
T PF14727_consen 189 FVTASSSWTLECYKYQ 204 (418)
T ss_pred EEEecCceeEEEecHH
Confidence 9999999999999864
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=94.38 E-value=9 Score=41.41 Aligned_cols=194 Identities=10% Similarity=0.030 Sum_probs=101.0
Q ss_pred eEEEEEecCC-eEE-EEECCC----cEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCC-----------cE
Q 005352 357 ILDLSWSKNN-YLL-SASIDK----TVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDG-----------KV 419 (701)
Q Consensus 357 I~~l~~s~~~-~l~-s~s~dg----~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg-----------~v 419 (701)
+..++++|++ +++ +.+..| .|++.|+.+++.+...-.......+.|.+ +++.|+....+. .|
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~-d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSD-DGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECT-TSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeC-CCCEEEEEEeCcccccccCCCCcEE
Confidence 4467889999 444 445555 49999999998765431112223499999 777766655433 37
Q ss_pred EEEeCCCCcEE--EEe-c-CCCc-EEEEEEeeCCCeEEEEecC----CcEEEEECCCC---eeeeeeeEEeecccCCCCC
Q 005352 420 RIWAVLSCHVV--DWV-D-IRQI-VTAVCYRPDGQGGIVGSMM----GDCRFYNVSDN---HLELDAEICVHSKKKAPCK 487 (701)
Q Consensus 420 ~iwd~~~~~~~--~~~-~-~~~~-i~~i~~sp~g~~l~~gs~d----g~v~i~d~~~~---~~~~~~~~~~~~~~~~~~~ 487 (701)
+.|.+.+...- .++ . .... ...+..++++++|++.... ..+.+.++... ..... .+.. ...
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~---~l~~----~~~ 277 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPK---LLSP----RED 277 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEE---EEEE----SSS
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcE---EEeC----CCC
Confidence 88888766421 222 2 2222 6788899999998875443 34777777764 11110 1111 111
Q ss_pred CeeEEEEecCCCCEEEEEEC---CCcEEEEeCCccce---eeecccCCCCeEEEEEecCCCEEEE-EeCCC--cEEEEeC
Q 005352 488 RITGFQFLPQDSSKVMVSCA---DSQVRILQGPNVIG---KYKGLRRSGNQLSACFTSDGKHIVS-AGEDS--NVYMWNC 558 (701)
Q Consensus 488 ~i~~l~~~p~~~~~l~~~s~---dg~I~iwd~~~~~~---~~~~~~~~~~v~~l~~s~dg~~l~s-gs~Dg--~I~iWd~ 558 (701)
.+....-.. ++.+++.+.. .+.|.-.++..... ......+...+.-..+...+.+|+. ...++ .|+++++
T Consensus 278 ~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~ 356 (414)
T PF02897_consen 278 GVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDL 356 (414)
T ss_dssp S-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEET
T ss_pred ceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEEC
Confidence 222222222 3334443322 46677777765442 1122234443333334444545544 44444 5888888
Q ss_pred C
Q 005352 559 I 559 (701)
Q Consensus 559 ~ 559 (701)
.
T Consensus 357 ~ 357 (414)
T PF02897_consen 357 D 357 (414)
T ss_dssp T
T ss_pred C
Confidence 7
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=94.33 E-value=8.8 Score=41.07 Aligned_cols=88 Identities=18% Similarity=0.234 Sum_probs=53.9
Q ss_pred EEEEecCC-eEEEEECCCcEEE---EECCC-----Ceeeeee----cCC--CCeEEEEEeeC----------CCCEEEEE
Q 005352 359 DLSWSKNN-YLLSASIDKTVRL---WRVGN-----DHCLRVF----PHS--NYVTCVHFNPV----------DDNYFISG 413 (701)
Q Consensus 359 ~l~~s~~~-~l~s~s~dg~I~i---Wd~~~-----~~~~~~~----~h~--~~V~~l~f~p~----------~~~~l~sg 413 (701)
.++.+|++ .|+.+..+..+.+ |+... +...... .+. ..|+++.+-|. +...++.|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 34667777 7777766666555 54311 1111111 132 57888887763 35789999
Q ss_pred EcCCcEEEEeCCCCcEEEEecCCCcEEEEEEee
Q 005352 414 SIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRP 446 (701)
Q Consensus 414 s~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp 446 (701)
..+|.|++|......+....-|..+|..+.+..
T Consensus 86 ~ssG~vrfyte~G~LL~~Q~~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 86 TSSGYVRFYTENGVLLLSQLLHEEPVLKIKCRS 118 (415)
T ss_pred ecccEEEEEeccchHHHHHhcCccceEEEEecc
Confidence 999999999874433334444667777766543
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.29 E-value=6.1 Score=39.10 Aligned_cols=196 Identities=10% Similarity=0.085 Sum_probs=101.4
Q ss_pred EEEcCCccCeEEEEEecCC-eEEEEECC-----CcEEEEECCCC-eeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcE
Q 005352 348 HEFHGHSGEILDLSWSKNN-YLLSASID-----KTVRLWRVGND-HCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKV 419 (701)
Q Consensus 348 ~~~~~h~~~I~~l~~s~~~-~l~s~s~d-----g~I~iWd~~~~-~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v 419 (701)
..|.||. .|||+| +|++.-.| |.|-|||.+.+ +.+..+. |.-....+.+.+ |+..++.+. |-|
T Consensus 113 RHfyGHG------vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~-DGrtlvvan--GGI 183 (366)
T COG3490 113 RHFYGHG------VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMA-DGRTLVVAN--GGI 183 (366)
T ss_pred ceeeccc------ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEec-CCcEEEEeC--Cce
Confidence 4566774 589999 55544333 67999998754 3344444 555667788888 998888764 333
Q ss_pred E--------------------EEeCCCCcEEEEec-----CCCcEEEEEEeeCCCeEEEEecCCcEE-----EEECCCCe
Q 005352 420 R--------------------IWAVLSCHVVDWVD-----IRQIVTAVCYRPDGQGGIVGSMMGDCR-----FYNVSDNH 469 (701)
Q Consensus 420 ~--------------------iwd~~~~~~~~~~~-----~~~~i~~i~~sp~g~~l~~gs~dg~v~-----i~d~~~~~ 469 (701)
. +.|..++.++.... +.-.|..++..+||..++.+-..|.-. +=-...++
T Consensus 184 ethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~ 263 (366)
T COG3490 184 ETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGE 263 (366)
T ss_pred ecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCC
Confidence 3 33434444442221 223466777777776554433222100 00000000
Q ss_pred eeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeC
Q 005352 470 LELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGE 549 (701)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~ 549 (701)
...-.. ..........+.|-+++.+..++...+++-..+...+||..+........ -.....+ -+.+.-++..+.
T Consensus 264 ~l~~~~-~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~--l~daaGv--a~~~~gf~vssg 338 (366)
T COG3490 264 PLEFLD-LPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAA--LPDAAGV--AAAKGGFAVSSG 338 (366)
T ss_pred cCcccC-CCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEeccc--ccccccc--eeccCceEEecC
Confidence 000000 00000111224567788877555555555567778889987654433221 1111222 233344566667
Q ss_pred CCcEEEEe
Q 005352 550 DSNVYMWN 557 (701)
Q Consensus 550 Dg~I~iWd 557 (701)
+|.+.++.
T Consensus 339 ~G~~~~~s 346 (366)
T COG3490 339 QGRIIFYS 346 (366)
T ss_pred CceEEecc
Confidence 89998884
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=94.25 E-value=11 Score=43.96 Aligned_cols=198 Identities=11% Similarity=0.061 Sum_probs=111.9
Q ss_pred CCeEEEEECCCcEEEEECCCCeeeeeecCCCCe---------EEEEEee---------------CCCCEEEEEEcCCcEE
Q 005352 365 NNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYV---------TCVHFNP---------------VDDNYFISGSIDGKVR 420 (701)
Q Consensus 365 ~~~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V---------~~l~f~p---------------~~~~~l~sgs~dg~v~ 420 (701)
++.|+.++.++.|.-.|..+++.+..+.....+ ..+.+.. ..+..++.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 457777888899999999999998888633221 2233321 1234788888899999
Q ss_pred EEeCCCCcEEEEecCCCcEE-------------EEEEee--CCCeEEEEec----------CCcEEEEECCCCeeeeeee
Q 005352 421 IWAVLSCHVVDWVDIRQIVT-------------AVCYRP--DGQGGIVGSM----------MGDCRFYNVSDNHLELDAE 475 (701)
Q Consensus 421 iwd~~~~~~~~~~~~~~~i~-------------~i~~sp--~g~~l~~gs~----------dg~v~i~d~~~~~~~~~~~ 475 (701)
-.|..+++.+..+...+.+. .+.-.| .+..+++|+. +|.|+-||..++++.....
T Consensus 274 ALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~ 353 (764)
T TIGR03074 274 ALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWD 353 (764)
T ss_pred EEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEe
Confidence 99999998885544333221 111112 2346666643 6889999999999876544
Q ss_pred EEeecccC----------CCCCCeeEEEEecCCCCEEEEEEC------------------CCcEEEEeCCccceeeeccc
Q 005352 476 ICVHSKKK----------APCKRITGFQFLPQDSSKVMVSCA------------------DSQVRILQGPNVIGKYKGLR 527 (701)
Q Consensus 476 ~~~~~~~~----------~~~~~i~~l~~~p~~~~~l~~~s~------------------dg~I~iwd~~~~~~~~~~~~ 527 (701)
........ .....-...++.+ ...+++.+.. .+.|.-.|..+.+.+.....
T Consensus 354 ~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~-~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~ 432 (764)
T TIGR03074 354 PGNPDPTAPPAPGETYTRNTPNSWSVASYDE-KLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQT 432 (764)
T ss_pred cCCCCcccCCCCCCEeccCCCCccCceEEcC-CCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecc
Confidence 21110000 0001112234444 2223333221 23344445554444433211
Q ss_pred --CC-------CCeEEEEEec-CCC---EEEEEeCCCcEEEEeCCCCCC
Q 005352 528 --RS-------GNQLSACFTS-DGK---HIVSAGEDSNVYMWNCIGHEE 563 (701)
Q Consensus 528 --~~-------~~v~~l~~s~-dg~---~l~sgs~Dg~I~iWd~~~~~~ 563 (701)
|. ....-+.+.. +|+ .++.++.+|.+++.|-++++.
T Consensus 433 ~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 481 (764)
T TIGR03074 433 VHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEP 481 (764)
T ss_pred cCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCE
Confidence 11 1111122322 553 889999999999999999875
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=94.14 E-value=9.6 Score=40.78 Aligned_cols=75 Identities=12% Similarity=0.115 Sum_probs=45.1
Q ss_pred CCeeEEEEecCCCCEEEEEECCCcEEEEeCCccc--eeeecccCCCCeEEEEEecC----------------CC-EEEEE
Q 005352 487 KRITGFQFLPQDSSKVMVSCADSQVRILQGPNVI--GKYKGLRRSGNQLSACFTSD----------------GK-HIVSA 547 (701)
Q Consensus 487 ~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~--~~~~~~~~~~~v~~l~~s~d----------------g~-~l~sg 547 (701)
..+.+++.+| .+.+.++...=|.|.++|+.... ..+++.+...--.--...+. .. +++-+
T Consensus 308 R~~~~i~~sP-~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIya 386 (415)
T PF14655_consen 308 REGESICLSP-SGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYA 386 (415)
T ss_pred ceEEEEEECC-CCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEe
Confidence 4578899999 57888887778999999987533 33333221100000000000 11 23445
Q ss_pred eCCCcEEEEeCCCCC
Q 005352 548 GEDSNVYMWNCIGHE 562 (701)
Q Consensus 548 s~Dg~I~iWd~~~~~ 562 (701)
-.-|.|-||.+.++.
T Consensus 387 prRg~lEvW~~~~g~ 401 (415)
T PF14655_consen 387 PRRGILEVWSMRQGP 401 (415)
T ss_pred ccCCeEEEEecCCCC
Confidence 678999999998886
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=93.43 E-value=4.7 Score=44.56 Aligned_cols=180 Identities=8% Similarity=0.066 Sum_probs=89.1
Q ss_pred eEEEEECCC-----cEEEEECCCCeeeeeec--CCCCeEEEEEeeCCCCEEEEEEcC--CcEEEEeCCCCcEEEEecCCC
Q 005352 367 YLLSASIDK-----TVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSID--GKVRIWAVLSCHVVDWVDIRQ 437 (701)
Q Consensus 367 ~l~s~s~dg-----~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~~~~~l~sgs~d--g~v~iwd~~~~~~~~~~~~~~ 437 (701)
.++.|+.++ ++..||..+++....-. ....-.+++. - ++.+.+.|+.+ ..+..||..+.+-........
T Consensus 274 lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~-~-~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~ 351 (480)
T PHA02790 274 VYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP-A-NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLK 351 (480)
T ss_pred EEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE-E-CCEEEEECCcCCCCceEEEECCCCeEEECCCCCC
Confidence 566676543 57778888776544322 1111112222 2 67777888754 357888877664433322222
Q ss_pred cEEE-EEEeeCCCeEEEEecCC---cEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEE
Q 005352 438 IVTA-VCYRPDGQGGIVGSMMG---DCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRI 513 (701)
Q Consensus 438 ~i~~-i~~sp~g~~l~~gs~dg---~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~i 513 (701)
+... ....-+|+..++|+.++ .+..||..++.......+.. +......+.+ ++.+.+.|+ .+.+
T Consensus 352 ~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~------~r~~~~~~~~---~~~IYv~GG---~~e~ 419 (480)
T PHA02790 352 PRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYY------PHYKSCALVF---GRRLFLVGR---NAEF 419 (480)
T ss_pred CCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCC------ccccceEEEE---CCEEEEECC---ceEE
Confidence 2211 12233677777777653 47789988776543221110 1111111122 456666663 4667
Q ss_pred EeCCccceee-ecccC-CCCeEEEEEecCCCEEEEEeCC-----CcEEEEeCCCCC
Q 005352 514 LQGPNVIGKY-KGLRR-SGNQLSACFTSDGKHIVSAGED-----SNVYMWNCIGHE 562 (701)
Q Consensus 514 wd~~~~~~~~-~~~~~-~~~v~~l~~s~dg~~l~sgs~D-----g~I~iWd~~~~~ 562 (701)
||..+..-.. ..... .... +++ .-+|+..+.||.+ ..|..||..+++
T Consensus 420 ydp~~~~W~~~~~m~~~r~~~-~~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 420 YCESSNTWTLIDDPIYPRDNP-ELI-IVDNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred ecCCCCcEeEcCCCCCCcccc-EEE-EECCEEEEECCcCCCcccceEEEEECCCCe
Confidence 8765322111 11111 1111 222 2366777777754 346677766543
|
|
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.42 E-value=9.1 Score=38.13 Aligned_cols=200 Identities=14% Similarity=0.147 Sum_probs=118.3
Q ss_pred EEcCCc-cCeEEEEEecCC-eEEEEECCCcEEEEECC---CCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEe
Q 005352 349 EFHGHS-GEILDLSWSKNN-YLLSASIDKTVRLWRVG---NDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWA 423 (701)
Q Consensus 349 ~~~~h~-~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~---~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd 423 (701)
.+.+|- ..|..+.....- ++..|-.--.+-+|+.. ....+..+...+-+..+.++ +++...+..+.-++|.|
T Consensus 36 ~~vghfg~~vsavdv~~~ya~v~qG~~l~i~ditn~~~~t~~~l~~~i~~~~l~~Dv~vs---e~yvyvad~ssGL~IvD 112 (370)
T COG5276 36 AYVGHFGKGVSAVDVRGAYAYVGQGFILAILDITNVSLQTHDVLLSVINARDLFADVRVS---EEYVYVADWSSGLRIVD 112 (370)
T ss_pred EEeeeccCCcccccccccccccccCceEeeccccCcccccCcceEEEEehhhhhheeEec---ccEEEEEcCCCceEEEe
Confidence 344565 445555443322 22222111123345544 22334444566777888885 46777777788899999
Q ss_pred CCCCcEEEE---ecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCC
Q 005352 424 VLSCHVVDW---VDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSS 500 (701)
Q Consensus 424 ~~~~~~~~~---~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~ 500 (701)
+.+...-.. ....+-. -.|.-.|++..++..+.-+.++|+.+..... +..........-..++. .++
T Consensus 113 IS~P~sP~~~~~lnt~gya--ygv~vsGn~aYVadlddgfLivdvsdpssP~-----lagrya~~~~d~~~v~I---SGn 182 (370)
T COG5276 113 ISTPDSPTLIGFLNTDGYA--YGVYVSGNYAYVADLDDGFLIVDVSDPSSPQ-----LAGRYALPGGDTHDVAI---SGN 182 (370)
T ss_pred ccCCCCcceeccccCCceE--EEEEecCCEEEEeeccCcEEEEECCCCCCce-----eeeeeccCCCCceeEEE---ecC
Confidence 987653332 2332333 3444568899999977788899998764322 11111112222234444 357
Q ss_pred EEEEEECCCcEEEEeCCcc-ceeeecccCCC-CeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCC
Q 005352 501 KVMVSCADSQVRILQGPNV-IGKYKGLRRSG-NQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEE 563 (701)
Q Consensus 501 ~l~~~s~dg~I~iwd~~~~-~~~~~~~~~~~-~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~ 563 (701)
+...+..|+-+.|.|+.+. ..++.++...+ .+.++..+++..+++... --+.+-|..+.+.
T Consensus 183 ~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~--egvlivd~s~~ss 245 (370)
T COG5276 183 YAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYD--EGVLIVDVSGPSS 245 (370)
T ss_pred eEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcc--cceEEEecCCCCC
Confidence 7788889999999998754 34555554445 788888888776666654 3477777777663
|
|
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=93.33 E-value=4.3 Score=35.51 Aligned_cols=107 Identities=12% Similarity=0.125 Sum_probs=73.5
Q ss_pred EEecCC-eEEEEECCCcEEEEECCC--------CeeeeeecCCCCeEEEEEeeC----CCCEEEEEEcCCcEEEEeCCCC
Q 005352 361 SWSKNN-YLLSASIDKTVRLWRVGN--------DHCLRVFPHSNYVTCVHFNPV----DDNYFISGSIDGKVRIWAVLSC 427 (701)
Q Consensus 361 ~~s~~~-~l~s~s~dg~I~iWd~~~--------~~~~~~~~h~~~V~~l~f~p~----~~~~l~sgs~dg~v~iwd~~~~ 427 (701)
+|.... .|+.++.-|.|.|++... ...+..+.....|++|+-.+. ....|+.|+ ...|..||+...
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~N 83 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVENN 83 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcccC
Confidence 343344 788888889999998763 345667778888999976652 355677776 567999999988
Q ss_pred cEEEEecCCCcEEEEEEee----CCCeEEEEecCCcEEEEECCCCe
Q 005352 428 HVVDWVDIRQIVTAVCYRP----DGQGGIVGSMMGDCRFYNVSDNH 469 (701)
Q Consensus 428 ~~~~~~~~~~~i~~i~~sp----~g~~l~~gs~dg~v~i~d~~~~~ 469 (701)
.-+........+.++.+-. ....+++| .+-.|.-||....+
T Consensus 84 ~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~e 128 (136)
T PF14781_consen 84 SDLFYKEVPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGNE 128 (136)
T ss_pred chhhhhhCccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCcE
Confidence 7776667778888888754 23344444 34556666665544
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.32 E-value=3.7 Score=43.16 Aligned_cols=72 Identities=18% Similarity=0.304 Sum_probs=51.5
Q ss_pred eeeecCc-cccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecC
Q 005352 207 ERVRLNE-EDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVED 282 (701)
Q Consensus 207 ~~~~~~~-~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~ 282 (701)
+.+-+++ +..+++...|.+.=|-.+..+.+....+. ...+|+|.+++||+|.+.||.--.|+.|.+++....
T Consensus 26 ngvFfDDaNkqlfavrSggatgvvvkgpndDVpiSfd----m~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d 98 (657)
T KOG2377|consen 26 NGVFFDDANKQLFAVRSGGATGVVVKGPNDDVPISFD----MDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPD 98 (657)
T ss_pred cceeeccCcceEEEEecCCeeEEEEeCCCCCCCceee----ecCCCceeEEEeccCcceEEEEecCceEEEEecCCC
Confidence 3444444 45667777777888877655544332222 125779999999999999999999999999997543
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=93.26 E-value=14 Score=41.44 Aligned_cols=194 Identities=13% Similarity=0.094 Sum_probs=111.1
Q ss_pred CCeEEEEECCCcEEEEECCCCeeeeeecCCCC--eE---E-------EEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEE
Q 005352 365 NNYLLSASIDKTVRLWRVGNDHCLRVFPHSNY--VT---C-------VHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDW 432 (701)
Q Consensus 365 ~~~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~--V~---~-------l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~ 432 (701)
++.++.++.++.|.-.|..+++.+..+..... +. + +++ .+..++.++.|+.|.-.|..+++.+-.
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av---~~~~v~v~t~dg~l~ALDa~TGk~~W~ 145 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL---YDGKVFFGTLDARLVALDAKTGKVVWS 145 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE---ECCEEEEEcCCCEEEEEECCCCCEEee
Confidence 55777788888999999999999888763221 11 1 222 234677788899999999999988743
Q ss_pred ecCCC-----cEEEEEEeeCCCeEEEEec------CCcEEEEECCCCeeeeeeeEEeeccc-------------------
Q 005352 433 VDIRQ-----IVTAVCYRPDGQGGIVGSM------MGDCRFYNVSDNHLELDAEICVHSKK------------------- 482 (701)
Q Consensus 433 ~~~~~-----~i~~i~~sp~g~~l~~gs~------dg~v~i~d~~~~~~~~~~~~~~~~~~------------------- 482 (701)
..... .+++.-.--++ .++++.. +|.|.-+|..+++.............
T Consensus 146 ~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~ 224 (527)
T TIGR03075 146 KKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWP 224 (527)
T ss_pred cccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCC
Confidence 32211 12111111133 5556543 68999999999987655433211100
Q ss_pred -----CCCCCCeeEEEEecCCCCEEEEEECC-----C-----------cEEEEeCCccceeeec--ccCC-------CCe
Q 005352 483 -----KAPCKRITGFQFLPQDSSKVMVSCAD-----S-----------QVRILQGPNVIGKYKG--LRRS-------GNQ 532 (701)
Q Consensus 483 -----~~~~~~i~~l~~~p~~~~~l~~~s~d-----g-----------~I~iwd~~~~~~~~~~--~~~~-------~~v 532 (701)
......-..+.+.| ...+++.+..+ + .|.-.|.++.+.+... ..|. ...
T Consensus 225 ~~~~~~gg~~~W~~~s~D~-~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p 303 (527)
T TIGR03075 225 GDAWKTGGGATWGTGSYDP-ETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEM 303 (527)
T ss_pred CCccccCCCCccCceeEcC-CCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCc
Confidence 00001112235555 34455555422 2 3444565554444322 2221 111
Q ss_pred EEEEEecCCC---EEEEEeCCCcEEEEeCCCCCC
Q 005352 533 LSACFTSDGK---HIVSAGEDSNVYMWNCIGHEE 563 (701)
Q Consensus 533 ~~l~~s~dg~---~l~sgs~Dg~I~iWd~~~~~~ 563 (701)
.-+.+..+|+ .++.+..+|.+++.|-.+++.
T Consensus 304 ~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 337 (527)
T TIGR03075 304 ILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKL 337 (527)
T ss_pred EEEEeccCCcEEEEEEEeCCCceEEEEECCCCce
Confidence 2223334676 788999999999999999874
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.16 E-value=4.2 Score=45.85 Aligned_cols=94 Identities=13% Similarity=0.100 Sum_probs=51.6
Q ss_pred cEEEEECCCCeeeeeecCCCC--eEEEEEeeCCCCEEEEEEcC------CcEEEEeCCCCcEEEEecCCCcE-EEEEEee
Q 005352 376 TVRLWRVGNDHCLRVFPHSNY--VTCVHFNPVDDNYFISGSID------GKVRIWAVLSCHVVDWVDIRQIV-TAVCYRP 446 (701)
Q Consensus 376 ~I~iWd~~~~~~~~~~~h~~~--V~~l~f~p~~~~~l~sgs~d------g~v~iwd~~~~~~~~~~~~~~~i-~~i~~sp 446 (701)
.+..||..+++....-..+.+ -.+++.. ++.+++.|+.+ ..+..||..+..-........+- ......-
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l--~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~ 350 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAIV--DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI 350 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEEE--CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE
Confidence 567788877654332221111 1223332 67777888754 34778898776543322221111 1112233
Q ss_pred CCCeEEEEecCC-----cEEEEECCCCeee
Q 005352 447 DGQGGIVGSMMG-----DCRFYNVSDNHLE 471 (701)
Q Consensus 447 ~g~~l~~gs~dg-----~v~i~d~~~~~~~ 471 (701)
+|+..++|+.++ .+..||..++...
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~ 380 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWK 380 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEE
Confidence 677778887754 3788999887654
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.90 E-value=0.31 Score=46.34 Aligned_cols=101 Identities=14% Similarity=0.073 Sum_probs=63.5
Q ss_pred eEEEEECCCcEEEEECCCCeeee-eec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEec-CC-CcEEEE
Q 005352 367 YLLSASIDKTVRLWRVGNDHCLR-VFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVD-IR-QIVTAV 442 (701)
Q Consensus 367 ~l~s~s~dg~I~iWd~~~~~~~~-~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~-~~-~~i~~i 442 (701)
.++.|+.+|.|.+|+........ .+. ....|-++--.-.++.+..+++.||.|+.|++.-.+.+.... |. .++...
T Consensus 72 ~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ 151 (238)
T KOG2444|consen 72 KLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEEL 151 (238)
T ss_pred eEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCccee
Confidence 78999999999999886321111 111 223343433332255689999999999999999888775554 33 344444
Q ss_pred EEeeCCCeEEEE--ecCCcEEEEECCC
Q 005352 443 CYRPDGQGGIVG--SMMGDCRFYNVSD 467 (701)
Q Consensus 443 ~~sp~g~~l~~g--s~dg~v~i~d~~~ 467 (701)
.....++.+..+ +.+..++.|++..
T Consensus 152 ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 152 IVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred EEecCCceEEeeccccchhhhhcchhh
Confidence 444455555555 6666666666653
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=92.39 E-value=5.8 Score=37.87 Aligned_cols=146 Identities=9% Similarity=0.059 Sum_probs=80.6
Q ss_pred CEEEEEEcCCcEEEEeCCC--CcEEEEecCCCcEEEEEEeeCCCeEEEEecC---C---cEEEEE---CC-CCeeeeeee
Q 005352 408 NYFISGSIDGKVRIWAVLS--CHVVDWVDIRQIVTAVCYRPDGQGGIVGSMM---G---DCRFYN---VS-DNHLELDAE 475 (701)
Q Consensus 408 ~~l~sgs~dg~v~iwd~~~--~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~d---g---~v~i~d---~~-~~~~~~~~~ 475 (701)
+.|+.+...+.|.+|++.. .+....+..-+.|..+.++..|+++++--.+ . .+|+|- .. .........
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vR 108 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVR 108 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEE
Confidence 4444446678899999983 3455566666899999999999999985332 2 566652 21 111111100
Q ss_pred EEe---------------ecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccce-----ee-ec------ccC
Q 005352 476 ICV---------------HSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIG-----KY-KG------LRR 528 (701)
Q Consensus 476 ~~~---------------~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~-----~~-~~------~~~ 528 (701)
+.- .-...+....+.+++.+|..|++++ |+ ++++.+|.+..... .+ .. +..
T Consensus 109 iaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlV-g~-~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~ 186 (215)
T PF14761_consen 109 IAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLV-GC-GNKLVLFTLKYQTIQSEKFSFLDFERSLIDHID 186 (215)
T ss_pred EcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEE-Ec-CCEEEEEEEEEEEEecccccEEechhhhhheec
Confidence 000 0001122346788999996666554 33 45788887653222 01 11 111
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 005352 529 SGNQLSACFTSDGKHIVSAGEDSNVYMWNC 558 (701)
Q Consensus 529 ~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~ 558 (701)
.-.+..++|. +.|+|..+. -.+++..+
T Consensus 187 ~~~p~~v~ic--~~yiA~~s~-~ev~Vlkl 213 (215)
T PF14761_consen 187 NFKPTQVAIC--EGYIAVMSD-LEVLVLKL 213 (215)
T ss_pred CceEEEEEEE--eeEEEEecC-CEEEEEEE
Confidence 1224455553 558888764 46777654
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.35 E-value=0.016 Score=64.53 Aligned_cols=61 Identities=16% Similarity=0.247 Sum_probs=34.3
Q ss_pred cceEEEEEccCccchhhhcccCceeccCCCcEEEEEEcc---CCCEEEEEeCCCcEEEEEeecC
Q 005352 222 VQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSP---DGQYLASAGDDGVVRLWQVVED 282 (701)
Q Consensus 222 d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp---dg~~Lasgs~Dg~I~iWd~~~~ 282 (701)
-|...||+++--..++..-.....+..-...+.-|.|.| +.-|+..+-.++.|++-++...
T Consensus 152 vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra 215 (1283)
T KOG1916|consen 152 VGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRA 215 (1283)
T ss_pred hhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechH
Confidence 366788887654333332222222233334445555554 5567777777888888776554
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=92.31 E-value=9.8 Score=37.98 Aligned_cols=147 Identities=18% Similarity=0.111 Sum_probs=85.5
Q ss_pred CeEEEEEeeCCCCEEEEEE---cCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEE-CCCCeee
Q 005352 396 YVTCVHFNPVDDNYFISGS---IDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYN-VSDNHLE 471 (701)
Q Consensus 396 ~V~~l~f~p~~~~~l~sgs---~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d-~~~~~~~ 471 (701)
.+...++++ ++..++... ....++++..... .........++.-+|++++...++...+...+++. ...+...
T Consensus 25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~~~~--~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGPAGGP--VRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECC-CCCeEEEEEEcCCCCEEEEEcCCCc--ceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 688999999 888776655 2334555544332 22222344788889999987777777666667664 2222211
Q ss_pred eeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEE---CCCcEEEEeCC---cc-ceee----ec-ccCCCCeEEEEEec
Q 005352 472 LDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSC---ADSQVRILQGP---NV-IGKY----KG-LRRSGNQLSACFTS 539 (701)
Q Consensus 472 ~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s---~dg~I~iwd~~---~~-~~~~----~~-~~~~~~v~~l~~s~ 539 (701)
. ..+.. ......|+.+.++| ++..++... .++.|.+--+. .. ...+ .. ......+..++|.+
T Consensus 102 ~---~~v~~--~~~~~~I~~l~vSp-DG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~ 175 (253)
T PF10647_consen 102 P---VEVDW--PGLRGRITALRVSP-DGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSD 175 (253)
T ss_pred e---EEecc--cccCCceEEEEECC-CCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecC
Confidence 0 01111 00111799999999 566555544 35677775432 11 1111 11 12346889999999
Q ss_pred CCCEEEEEeCCC
Q 005352 540 DGKHIVSAGEDS 551 (701)
Q Consensus 540 dg~~l~sgs~Dg 551 (701)
++.+++.+...+
T Consensus 176 ~~~L~V~~~~~~ 187 (253)
T PF10647_consen 176 DSTLVVLGRSAG 187 (253)
T ss_pred CCEEEEEeCCCC
Confidence 998877765443
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.25 E-value=15 Score=37.70 Aligned_cols=188 Identities=13% Similarity=0.085 Sum_probs=104.9
Q ss_pred EEecCC--eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEe-c---
Q 005352 361 SWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV-D--- 434 (701)
Q Consensus 361 ~~s~~~--~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~-~--- 434 (701)
.|.++. .+.+--..+.|.-|+..+++. ..+.+.+.+.++.... .+..|+++. ..+.+++..++..+... .
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~~p~~~~~~~~~d-~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~ 106 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKK-RVFPSPGGFSSGALID-AGGRLIACE--HGVRLLDPDTGGKITLLAEPED 106 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEECCCCcccceeec-CCCeEEEEc--cccEEEeccCCceeEEeccccC
Confidence 466665 455555678889998876543 3444555556655543 444555543 34677777666552221 1
Q ss_pred --CCCcEEEEEEeeCCCeEEEEec-----------CCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCE
Q 005352 435 --IRQIVTAVCYRPDGQGGIVGSM-----------MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSK 501 (701)
Q Consensus 435 --~~~~i~~i~~sp~g~~l~~gs~-----------dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~ 501 (701)
.....+.+...|+|.+.+.... -|.++.++.......+ ...+...-++++|+|++..+
T Consensus 107 ~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l---------~~~~~~~~NGla~SpDg~tl 177 (307)
T COG3386 107 GLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRL---------LDDDLTIPNGLAFSPDGKTL 177 (307)
T ss_pred CCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEe---------ecCcEEecCceEECCCCCEE
Confidence 1134667888899876655433 1334444432111111 11112345789999954444
Q ss_pred EEEEECCCcEEEEeCCc-------cceeeecccCCCCeEEEEEecCCCEEEEEeCCC-cEEEEeCCCCC
Q 005352 502 VMVSCADSQVRILQGPN-------VIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDS-NVYMWNCIGHE 562 (701)
Q Consensus 502 l~~~s~dg~I~iwd~~~-------~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg-~I~iWd~~~~~ 562 (701)
+++=+..+.|.-|+... ....+......+..-.++...+|.+.+++-.+| .|.+|+.+ ++
T Consensus 178 y~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~ 245 (307)
T COG3386 178 YVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GK 245 (307)
T ss_pred EEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-Cc
Confidence 44555568888887652 111111111345556677888888776555554 89999987 44
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=92.24 E-value=13 Score=37.02 Aligned_cols=150 Identities=19% Similarity=0.138 Sum_probs=85.8
Q ss_pred CeEEEEEecCC-eEEEEE-CCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEe-CCCCcE---
Q 005352 356 EILDLSWSKNN-YLLSAS-IDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWA-VLSCHV--- 429 (701)
Q Consensus 356 ~I~~l~~s~~~-~l~s~s-~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd-~~~~~~--- 429 (701)
.+...++++++ .++... .++.-.||-...+...........++.-.|.+ ++...+....+...+++. ...+..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~~~~~ 103 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGTGEPV 103 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccC-CCCEEEEEcCCCceEEEEecCCCcceeE
Confidence 68889999999 444443 33344444434443333332344778888999 777666666666667663 333322
Q ss_pred -EEEecCCCcEEEEEEeeCCCeEEEEe---cCCcEEEEECCCCeee-eeeeEEeecccCCCCCCeeEEEEecCCCCEEEE
Q 005352 430 -VDWVDIRQIVTAVCYRPDGQGGIVGS---MMGDCRFYNVSDNHLE-LDAEICVHSKKKAPCKRITGFQFLPQDSSKVMV 504 (701)
Q Consensus 430 -~~~~~~~~~i~~i~~sp~g~~l~~gs---~dg~v~i~d~~~~~~~-~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~ 504 (701)
+.+......|+.+.++|||..++.-. .++.|.+--+....-- .................++.+.|.+ +..+++.
T Consensus 104 ~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~-~~~L~V~ 182 (253)
T PF10647_consen 104 EVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSD-DSTLVVL 182 (253)
T ss_pred EecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecC-CCEEEEE
Confidence 22222223899999999999888766 3477777655422111 0000011111223346789999999 4555555
Q ss_pred EEC
Q 005352 505 SCA 507 (701)
Q Consensus 505 ~s~ 507 (701)
+..
T Consensus 183 ~~~ 185 (253)
T PF10647_consen 183 GRS 185 (253)
T ss_pred eCC
Confidence 544
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=91.74 E-value=32 Score=40.26 Aligned_cols=159 Identities=10% Similarity=0.008 Sum_probs=88.9
Q ss_pred CeEEEEECCCcEEEEECCCCeeeeeecCCCCeE-------------EEEEee-CCCCEEEEEEc----------CCcEEE
Q 005352 366 NYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVT-------------CVHFNP-VDDNYFISGSI----------DGKVRI 421 (701)
Q Consensus 366 ~~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~-------------~l~f~p-~~~~~l~sgs~----------dg~v~i 421 (701)
+.++.++.|+.|.-.|..+++.+..|...+.|. .+.-.| ..+..++.|+. +|.|+-
T Consensus 261 ~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A 340 (764)
T TIGR03074 261 RRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRA 340 (764)
T ss_pred CEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEE
Confidence 378888889999999999999988776444331 011111 02345666643 688999
Q ss_pred EeCCCCcEEEEecCC----------C--------cE-EEEEEeeCCCeEEEEec------------------CCcEEEEE
Q 005352 422 WAVLSCHVVDWVDIR----------Q--------IV-TAVCYRPDGQGGIVGSM------------------MGDCRFYN 464 (701)
Q Consensus 422 wd~~~~~~~~~~~~~----------~--------~i-~~i~~sp~g~~l~~gs~------------------dg~v~i~d 464 (701)
+|.++++.+-..... + .+ ..++++|....++.+.. .+.|.-.|
T Consensus 341 ~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD 420 (764)
T TIGR03074 341 FDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALD 420 (764)
T ss_pred EECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEe
Confidence 999999877322110 0 01 23455555555555332 24455666
Q ss_pred CCCCeeeeeeeEEeecccCC-CCCCeeEEEEecCCC---CEEEEEECCCcEEEEeCCccceeee
Q 005352 465 VSDNHLELDAEICVHSKKKA-PCKRITGFQFLPQDS---SKVMVSCADSQVRILQGPNVIGKYK 524 (701)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~-~~~~i~~l~~~p~~~---~~l~~~s~dg~I~iwd~~~~~~~~~ 524 (701)
.++++.....+...+..-.. ......-+.+...++ ..++.++.+|.++++|-.+.+....
T Consensus 421 ~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~ 484 (764)
T TIGR03074 421 ATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVP 484 (764)
T ss_pred CCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEee
Confidence 66666654443322211100 001111111211133 3788899999999999876655443
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=91.58 E-value=7 Score=41.50 Aligned_cols=151 Identities=10% Similarity=0.035 Sum_probs=77.7
Q ss_pred CCeEEEEEeeCCCCEEEEEE-----------cCC-cEEEEeCCC--CcE---EEEecCCCcEEEEEEeeCCCeEEEEecC
Q 005352 395 NYVTCVHFNPVDDNYFISGS-----------IDG-KVRIWAVLS--CHV---VDWVDIRQIVTAVCYRPDGQGGIVGSMM 457 (701)
Q Consensus 395 ~~V~~l~f~p~~~~~l~sgs-----------~dg-~v~iwd~~~--~~~---~~~~~~~~~i~~i~~sp~g~~l~~gs~d 457 (701)
.....|+|.+ +++++++-. ..+ .|.+++-.+ ++. ..+...-...+.+++.++| |+++...
T Consensus 14 ~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPP 90 (367)
T ss_pred CCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCC
Confidence 4567888988 888777642 123 676665432 222 2223334456889999988 5555544
Q ss_pred CcEEEEECCCCeeee-eeeEEeecccC---CCCCCeeEEEEecCCCCEEEEEECC-------------------CcEEEE
Q 005352 458 GDCRFYNVSDNHLEL-DAEICVHSKKK---APCKRITGFQFLPQDSSKVMVSCAD-------------------SQVRIL 514 (701)
Q Consensus 458 g~v~i~d~~~~~~~~-~~~~~~~~~~~---~~~~~i~~l~~~p~~~~~l~~~s~d-------------------g~I~iw 514 (701)
...++.|........ ..+........ .+......+.|.| ++.+.++-+.. +.|.-+
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~ 169 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRY 169 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCceeccCCCccCcccccCceEEEE
Confidence 333344543221111 11111111111 1245577899999 56665554421 334444
Q ss_pred eCCccceeeecccCCCCeEEEEEecCCCEEEEEeCC
Q 005352 515 QGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGED 550 (701)
Q Consensus 515 d~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~D 550 (701)
+........... .......++|+++|+++++-..+
T Consensus 170 ~pdg~~~e~~a~-G~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 170 NPDGGKLRVVAH-GFQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred ecCCCeEEEEec-CcCCCccceECCCCCEEEEccCC
Confidence 443322222121 23445789999999887765433
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=91.17 E-value=0.75 Score=31.36 Aligned_cols=32 Identities=31% Similarity=0.473 Sum_probs=26.6
Q ss_pred CcEEEEEEccCC---CEEEEEeCCCcEEEEEeecC
Q 005352 251 GSILTMKFSPDG---QYLASAGDDGVVRLWQVVED 282 (701)
Q Consensus 251 ~~I~~l~fspdg---~~Lasgs~Dg~I~iWd~~~~ 282 (701)
|+|.+|+|||.. .+|+-+-.-|.|.|+|+.++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 579999999853 58888888899999999853
|
It contains a characteristic DLL sequence motif. |
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=91.13 E-value=9 Score=43.11 Aligned_cols=112 Identities=13% Similarity=0.179 Sum_probs=74.2
Q ss_pred cEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEec-CCCCEEEEEECCCcEEEEeC
Q 005352 438 IVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLP-QDSSKVMVSCADSQVRILQG 516 (701)
Q Consensus 438 ~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p-~~~~~l~~~s~dg~I~iwd~ 516 (701)
.++-+.-+.-++..++-+....+.|||.+...+..+..+ .....|.++.|.. .+++.+++.+..+.|.+|--
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-------~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q 103 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF-------SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ 103 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee-------cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence 344455555566666665667799999998876544332 3446788888864 26788999999999999853
Q ss_pred C-----c------cceeeecccC-CCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 005352 517 P-----N------VIGKYKGLRR-SGNQLSACFTSDGKHIVSAGEDSNVYMWNC 558 (701)
Q Consensus 517 ~-----~------~~~~~~~~~~-~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~ 558 (701)
. + ....+....+ ..+|.+..|.++|.+++.++ +.++|++-
T Consensus 104 ~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 104 LRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred cchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 2 1 1122222223 36788999999997666554 57888874
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=90.56 E-value=9.6 Score=42.90 Aligned_cols=113 Identities=13% Similarity=0.125 Sum_probs=68.0
Q ss_pred eEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEE--EecCCCcEEEEEEe--eCCCeEEEEecCCcEEEEECCC-----
Q 005352 397 VTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD--WVDIRQIVTAVCYR--PDGQGGIVGSMMGDCRFYNVSD----- 467 (701)
Q Consensus 397 V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~--~~~~~~~i~~i~~s--p~g~~l~~gs~dg~v~i~d~~~----- 467 (701)
++-+.-+. .++.-++-+....+.|||.+.+.... .+...+.|..+.|. |+|+.+++.+....|.+|--..
T Consensus 32 ~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~ 110 (631)
T PF12234_consen 32 PSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN 110 (631)
T ss_pred cceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence 33444443 34444444444579999999887553 33457889999886 5889888888889999886421
Q ss_pred Ce--eeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeC
Q 005352 468 NH--LELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQG 516 (701)
Q Consensus 468 ~~--~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~ 516 (701)
.. ......+.+ ......+|.+..|.+ ++.+++ |+ ++++.|+|-
T Consensus 111 ~~p~w~~i~~i~i---~~~T~h~Igds~Wl~-~G~LvV-~s-GNqlfv~dk 155 (631)
T PF12234_consen 111 KGPSWAPIRKIDI---SSHTPHPIGDSIWLK-DGTLVV-GS-GNQLFVFDK 155 (631)
T ss_pred CCcccceeEEEEe---ecCCCCCccceeEec-CCeEEE-Ee-CCEEEEECC
Confidence 11 111111111 122235688899988 444443 33 457888764
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=90.16 E-value=24 Score=36.02 Aligned_cols=167 Identities=10% Similarity=0.132 Sum_probs=91.3
Q ss_pred cEEEEECCCCeeeeeec-------CCCCeEEEEEeeCCC----CEE-EEEEcCCcEEEEeCCCCcEEEEecC--------
Q 005352 376 TVRLWRVGNDHCLRVFP-------HSNYVTCVHFNPVDD----NYF-ISGSIDGKVRIWAVLSCHVVDWVDI-------- 435 (701)
Q Consensus 376 ~I~iWd~~~~~~~~~~~-------h~~~V~~l~f~p~~~----~~l-~sgs~dg~v~iwd~~~~~~~~~~~~-------- 435 (701)
.|.+||+.+++.++.+. ..+.+..+.+...++ .++ ++=...+.|.|+|+.+++..+...+
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 68899999999988875 346788888876332 233 3333446799999999875544322
Q ss_pred ------------CCcEEEEEEee---CCCeEEEEecCCcEEEEECCCCeee-----eee----eEEeecccCCCCCCeeE
Q 005352 436 ------------RQIVTAVCYRP---DGQGGIVGSMMGDCRFYNVSDNHLE-----LDA----EICVHSKKKAPCKRITG 491 (701)
Q Consensus 436 ------------~~~i~~i~~sp---~g~~l~~gs~dg~v~i~d~~~~~~~-----~~~----~~~~~~~~~~~~~~i~~ 491 (701)
...+..++.+| +++.|+-....+ -++|.+.+..+. ... .+..... ......+
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~---k~~~s~g 190 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLGD---KGSQSDG 190 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE------SECE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceeccc---cCCCCce
Confidence 12244555544 444555443322 123333221110 000 0111111 1134567
Q ss_pred EEEecCCCCEEEEEECCCcEEEEeCCccc-----eee-ecccCCCCeEEEEEec--CCCEEEEE
Q 005352 492 FQFLPQDSSKVMVSCADSQVRILQGPNVI-----GKY-KGLRRSGNQLSACFTS--DGKHIVSA 547 (701)
Q Consensus 492 l~~~p~~~~~l~~~s~dg~I~iwd~~~~~-----~~~-~~~~~~~~v~~l~~s~--dg~~l~sg 547 (701)
+++.+ ++.++++--..+.|..|+..... ..+ .-...-..+..+.+.+ +|.+.+..
T Consensus 191 ~~~D~-~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 191 MAIDP-NGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp EEEET-TTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred EEECC-CCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 78888 78888888889999999987522 122 2111235678888888 66555544
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=90.00 E-value=11 Score=42.28 Aligned_cols=103 Identities=17% Similarity=0.215 Sum_probs=54.2
Q ss_pred eEEEEECC-----CcEEEEECCCCeeeeee--cCCCCeEEEEEeeCCCCEEEEEEcC------CcEEEEeCCCCcEEEEe
Q 005352 367 YLLSASID-----KTVRLWRVGNDHCLRVF--PHSNYVTCVHFNPVDDNYFISGSID------GKVRIWAVLSCHVVDWV 433 (701)
Q Consensus 367 ~l~s~s~d-----g~I~iWd~~~~~~~~~~--~h~~~V~~l~f~p~~~~~l~sgs~d------g~v~iwd~~~~~~~~~~ 433 (701)
.++.|+.+ ..+..||..+++....- .+...-.+++.. ++.+++.|+.+ ..+..||..+.+-....
T Consensus 345 lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~ 422 (534)
T PHA03098 345 IYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGS 422 (534)
T ss_pred EEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCeeeecC
Confidence 55556654 34777888776543322 122211222222 66777777732 35888998876543322
Q ss_pred cCCCcE-EEEEEeeCCCeEEEEecC--------CcEEEEECCCCeee
Q 005352 434 DIRQIV-TAVCYRPDGQGGIVGSMM--------GDCRFYNVSDNHLE 471 (701)
Q Consensus 434 ~~~~~i-~~i~~sp~g~~l~~gs~d--------g~v~i~d~~~~~~~ 471 (701)
....+. ...+...++..++.|+.+ ..+.+||..+++..
T Consensus 423 ~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~ 469 (534)
T PHA03098 423 PLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWT 469 (534)
T ss_pred CCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCcee
Confidence 211111 111223356666777643 23888998887654
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.62 E-value=20 Score=34.53 Aligned_cols=141 Identities=11% Similarity=0.129 Sum_probs=81.9
Q ss_pred CeEEEEEecCCeEEEEECC----------CcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEE-EEEEcCCcEEEEe-
Q 005352 356 EILDLSWSKNNYLLSASID----------KTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYF-ISGSIDGKVRIWA- 423 (701)
Q Consensus 356 ~I~~l~~s~~~~l~s~s~d----------g~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l-~sgs~dg~v~iwd- 423 (701)
...+-..+|+|.++.|.+. |.++.|-.. ++....+..-.--+.++|+. +.+.| ++-+.+-+|.-||
T Consensus 110 R~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~-h~v~~i~~~v~IsNgl~Wd~-d~K~fY~iDsln~~V~a~dy 187 (310)
T KOG4499|consen 110 RLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG-HQVELIWNCVGISNGLAWDS-DAKKFYYIDSLNYEVDAYDY 187 (310)
T ss_pred ccccCccCCCCceeeeeeccccccccccccEEEEeccC-CCceeeehhccCCccccccc-cCcEEEEEccCceEEeeeec
Confidence 3444556777744544432 345555332 22222223334456788886 55544 4555667787777
Q ss_pred -CCCCcEE------EEec----CCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEE
Q 005352 424 -VLSCHVV------DWVD----IRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGF 492 (701)
Q Consensus 424 -~~~~~~~------~~~~----~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l 492 (701)
..++.+. .+.. .....-.+++.-+|+..++.-..++|...|..+++..++..+. ...|+++
T Consensus 188 d~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklP--------t~qitsc 259 (310)
T KOG4499|consen 188 DCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLP--------TPQITSC 259 (310)
T ss_pred CCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcC--------CCceEEE
Confidence 5555432 1111 0111334556678888888888899999999999987765443 4669999
Q ss_pred EEecCCCCEEEEEE
Q 005352 493 QFLPQDSSKVMVSC 506 (701)
Q Consensus 493 ~~~p~~~~~l~~~s 506 (701)
+|--.+-..+.+..
T Consensus 260 cFgGkn~d~~yvT~ 273 (310)
T KOG4499|consen 260 CFGGKNLDILYVTT 273 (310)
T ss_pred EecCCCccEEEEEe
Confidence 99653334555444
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=89.57 E-value=25 Score=35.49 Aligned_cols=204 Identities=15% Similarity=0.130 Sum_probs=112.9
Q ss_pred CeEEEEEecCC-eEEEEECCCcEEEEECC------CC-eeeeeec------CCCCeEEEEEeeCCCC------------E
Q 005352 356 EILDLSWSKNN-YLLSASIDKTVRLWRVG------ND-HCLRVFP------HSNYVTCVHFNPVDDN------------Y 409 (701)
Q Consensus 356 ~I~~l~~s~~~-~l~s~s~dg~I~iWd~~------~~-~~~~~~~------h~~~V~~l~f~p~~~~------------~ 409 (701)
.-+.|+++|.+ .-++...-+...+||.. .. ..+..+. .....+.+.|+. ... .
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~-~~~F~vt~~g~~~~a~ 102 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNG-SDTFVVSGEGITGPSR 102 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeC-CCceEEcCCCccccee
Confidence 35789999988 66677777899999986 22 2233333 235688888885 222 3
Q ss_pred EEEEEcCCcEEEEeCCCCcE-----EEEec--CCCcE-EEEEEeeC--CCeEEEE-ecCCcEEEEECCCCeeeeeeeEEe
Q 005352 410 FISGSIDGKVRIWAVLSCHV-----VDWVD--IRQIV-TAVCYRPD--GQGGIVG-SMMGDCRFYNVSDNHLELDAEICV 478 (701)
Q Consensus 410 l~sgs~dg~v~iwd~~~~~~-----~~~~~--~~~~i-~~i~~sp~--g~~l~~g-s~dg~v~i~d~~~~~~~~~~~~~~ 478 (701)
|+.++.||+|.-|...-... ....+ ....| ..+++... +.+|+.+ -..++|.+||-.=.+......+.-
T Consensus 103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~D 182 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFID 182 (336)
T ss_pred EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccC
Confidence 67788999999997532221 11122 12233 34555443 4455444 457888888865332211100000
Q ss_pred ecccCCCCCCeeEEE---------EecC--CCCEEEEEECCCcEEEEeCC-ccceeeecccCCCCeEEEEEec------C
Q 005352 479 HSKKKAPCKRITGFQ---------FLPQ--DSSKVMVSCADSQVRILQGP-NVIGKYKGLRRSGNQLSACFTS------D 540 (701)
Q Consensus 479 ~~~~~~~~~~i~~l~---------~~p~--~~~~l~~~s~dg~I~iwd~~-~~~~~~~~~~~~~~v~~l~~s~------d 540 (701)
.. ......-..++ |..+ +...=+.+..-|.|-+||.. ...+.+.....-.....|+..| .
T Consensus 183 P~--iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~as~g~LNaPWG~a~APa~FG~~s 260 (336)
T TIGR03118 183 PA--LPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVASSGRLNAPWGLAIAPESFGSLS 260 (336)
T ss_pred CC--CCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEeccCCcccCCceeeeChhhhCCCC
Confidence 00 00001111111 1111 11122233445789999986 4444454444455667777755 4
Q ss_pred CCEEEEEeCCCcEEEEeCCCCC
Q 005352 541 GKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 541 g~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
|.+|+--=.||+|..+|..+++
T Consensus 261 g~lLVGNFGDG~InaFD~~sG~ 282 (336)
T TIGR03118 261 GALLVGNFGDGTINAYDPQSGA 282 (336)
T ss_pred CCeEEeecCCceeEEecCCCCc
Confidence 6677776679999999998876
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.16 E-value=22 Score=34.30 Aligned_cols=143 Identities=13% Similarity=0.137 Sum_probs=83.0
Q ss_pred CCCeEEEEEeeCCCCEEEEEEcC---------CcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEE-EecCCcEEEE
Q 005352 394 SNYVTCVHFNPVDDNYFISGSID---------GKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIV-GSMMGDCRFY 463 (701)
Q Consensus 394 ~~~V~~l~f~p~~~~~l~sgs~d---------g~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~-gs~dg~v~i~ 463 (701)
....+.-..+| ++++++-.-.| |.++.|-.. +++......-..-+.++|+.+.+.+.. -+.+-.|.-|
T Consensus 108 knR~NDgkvdP-~Gryy~GtMad~~~~le~~~g~Ly~~~~~-h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~ 185 (310)
T KOG4499|consen 108 KNRLNDGKVDP-DGRYYGGTMADFGDDLEPIGGELYSWLAG-HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAY 185 (310)
T ss_pred hcccccCccCC-CCceeeeeeccccccccccccEEEEeccC-CCceeeehhccCCccccccccCcEEEEEccCceEEeee
Confidence 45566677788 88885432222 445555332 233333333445567889887766554 4556667667
Q ss_pred E--CCCCeeeeeeeEE-eecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEec
Q 005352 464 N--VSDNHLELDAEIC-VHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTS 539 (701)
Q Consensus 464 d--~~~~~~~~~~~~~-~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~ 539 (701)
| ..++.......+. +............++++.. ++.+.++.-..++|..+|..+.+......-....|+++||--
T Consensus 186 dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~-eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 186 DYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDT-EGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred ecCCCcccccCcceeEEeccCCCcCCCCCCcceEcc-CCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 7 5555433222111 1111111111123344444 678888888899999999987766655555688899999953
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=88.89 E-value=29 Score=38.42 Aligned_cols=102 Identities=13% Similarity=0.080 Sum_probs=53.9
Q ss_pred CC-eEEEEECC--CcEEEEECCCCeeeeeec--CCCCeEEEEEeeCCCCEEEEEEcCC---cEEEEeCCCCcEEEEecCC
Q 005352 365 NN-YLLSASID--KTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSIDG---KVRIWAVLSCHVVDWVDIR 436 (701)
Q Consensus 365 ~~-~l~s~s~d--g~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~~~~~l~sgs~dg---~v~iwd~~~~~~~~~~~~~ 436 (701)
++ ..+.|+.+ ..+..||..+++-...-. ....-.+++.. ++.+.+.|+.++ .+..||..+.+-.......
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~ 395 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASI--NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTY 395 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEE--CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCC
Confidence 45 55555543 457888877664433222 21111122222 677888887654 4678888776543322211
Q ss_pred CcEE-EEEEeeCCCeEEEEecCCcEEEEECCCCeee
Q 005352 437 QIVT-AVCYRPDGQGGIVGSMMGDCRFYNVSDNHLE 471 (701)
Q Consensus 437 ~~i~-~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~ 471 (701)
.+.. ..+..-+++..++| |.+.+||..+++..
T Consensus 396 ~~r~~~~~~~~~~~IYv~G---G~~e~ydp~~~~W~ 428 (480)
T PHA02790 396 YPHYKSCALVFGRRLFLVG---RNAEFYCESSNTWT 428 (480)
T ss_pred CccccceEEEECCEEEEEC---CceEEecCCCCcEe
Confidence 1111 11223456666666 45788999887664
|
|
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=88.45 E-value=14 Score=32.48 Aligned_cols=107 Identities=14% Similarity=0.126 Sum_probs=65.9
Q ss_pred EEEEeeCCCCEEEEEEcCCcEEEEeCCCC--------cEEEEecCCCcEEEEEEee-----CCCeEEEEecCCcEEEEEC
Q 005352 399 CVHFNPVDDNYFISGSIDGKVRIWAVLSC--------HVVDWVDIRQIVTAVCYRP-----DGQGGIVGSMMGDCRFYNV 465 (701)
Q Consensus 399 ~l~f~p~~~~~l~sgs~dg~v~iwd~~~~--------~~~~~~~~~~~i~~i~~sp-----~g~~l~~gs~dg~v~i~d~ 465 (701)
.-.|.. ....|++++.-|+|.|++.... ..+..+.....|++++-.+ ....|++|+. ..+..||+
T Consensus 3 iGkfDG-~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~-t~llaYDV 80 (136)
T PF14781_consen 3 IGKFDG-VHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDV 80 (136)
T ss_pred EEEeCC-CceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEc
Confidence 345655 4557888888999999987633 3456777888899987665 2456666665 67999999
Q ss_pred CCCeeeeeeeEEeecccCCCCCCeeEEEEecC--CCCEEEEEECCCcEEEEeC
Q 005352 466 SDNHLELDAEICVHSKKKAPCKRITGFQFLPQ--DSSKVMVSCADSQVRILQG 516 (701)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~--~~~~l~~~s~dg~I~iwd~ 516 (701)
..+.-..... ....+.++.+-.- ...-++..+.+..|.-||.
T Consensus 81 ~~N~d~Fyke---------~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~ 124 (136)
T PF14781_consen 81 ENNSDLFYKE---------VPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDY 124 (136)
T ss_pred ccCchhhhhh---------CccceeEEEEEecCCCCCcEEEECceEEEEEeCC
Confidence 8876443221 1244555555321 1233444444445555553
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=88.42 E-value=20 Score=40.84 Aligned_cols=109 Identities=10% Similarity=0.047 Sum_probs=74.2
Q ss_pred CeEEEEEecCC---eEEEEECCCcEEEEECCC-------C-------------eeeeeecCCCCeEEEEEe--eCCCCEE
Q 005352 356 EILDLSWSKNN---YLLSASIDKTVRLWRVGN-------D-------------HCLRVFPHSNYVTCVHFN--PVDDNYF 410 (701)
Q Consensus 356 ~I~~l~~s~~~---~l~s~s~dg~I~iWd~~~-------~-------------~~~~~~~h~~~V~~l~f~--p~~~~~l 410 (701)
.|..|....=+ .|+.|..||.|.+|.+++ . ++...+.....+++++++ . ..++|
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~-~~rlI 180 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYK-KSRLI 180 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecC-cceEE
Confidence 45555554433 899999999999996521 0 112223356678999998 6 67788
Q ss_pred EEEEcCCcEEEEeCCC--CcEE--EEecCCCcEEEEEEeeCC---C---eEEEEecCCcEEEEEC
Q 005352 411 ISGSIDGKVRIWAVLS--CHVV--DWVDIRQIVTAVCYRPDG---Q---GGIVGSMMGDCRFYNV 465 (701)
Q Consensus 411 ~sgs~dg~v~iwd~~~--~~~~--~~~~~~~~i~~i~~sp~g---~---~l~~gs~dg~v~i~d~ 465 (701)
|+++....|.||-... .+.. ....+...|.+|+|-++. . .+++++-.|.+.+|++
T Consensus 181 AVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 181 AVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 8888777888875543 2211 223466779999998743 2 6778888999999887
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=88.34 E-value=7.8 Score=41.42 Aligned_cols=148 Identities=15% Similarity=0.097 Sum_probs=88.7
Q ss_pred CCCEEE-EEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCC-------eEEEEecCCcEEEEECCCCeeeeeeeEE
Q 005352 406 DDNYFI-SGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQ-------GGIVGSMMGDCRFYNVSDNHLELDAEIC 477 (701)
Q Consensus 406 ~~~~l~-sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~-------~l~~gs~dg~v~i~d~~~~~~~~~~~~~ 477 (701)
+.++|+ .|.....++-.|+..|+++........+ -+.|.|..+ .-++|-.+..|.-.|.+-..... .
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi----~ 552 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKI----K 552 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCce----e
Confidence 444444 4555567888899999999666555555 678888532 23445555555555554322111 1
Q ss_pred eeccc-CCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 005352 478 VHSKK-KAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMW 556 (701)
Q Consensus 478 ~~~~~-~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iW 556 (701)
....+ -.......+..- ....++++++..|-|++||--....+-........|..+..+.+|++|++.+. ..+.+-
T Consensus 553 v~esKdY~tKn~Fss~~t--TesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~ 629 (776)
T COG5167 553 VVESKDYKTKNKFSSGMT--TESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLT 629 (776)
T ss_pred eeeehhcccccccccccc--ccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEE
Confidence 11101 011111222211 25689999999999999995433333333345678899999999999887764 577777
Q ss_pred eCCCC
Q 005352 557 NCIGH 561 (701)
Q Consensus 557 d~~~~ 561 (701)
|+.-.
T Consensus 630 d~~ik 634 (776)
T COG5167 630 DVPIK 634 (776)
T ss_pred ecccc
Confidence 76543
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=87.59 E-value=1.7 Score=29.63 Aligned_cols=32 Identities=25% Similarity=0.422 Sum_probs=26.6
Q ss_pred CCeEEEEEeeCCC--CEEEEEEcCCcEEEEeCCC
Q 005352 395 NYVTCVHFNPVDD--NYFISGSIDGKVRIWAVLS 426 (701)
Q Consensus 395 ~~V~~l~f~p~~~--~~l~sgs~dg~v~iwd~~~ 426 (701)
+.|.++.|+|... .+|+.+-.-|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4689999998444 6888888889999999985
|
It contains a characteristic DLL sequence motif. |
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=87.56 E-value=36 Score=34.85 Aligned_cols=189 Identities=12% Similarity=0.107 Sum_probs=88.4
Q ss_pred eEEEEEecCCeEEEEECCCcEEEEECCCCeeeeeec----CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEE--
Q 005352 357 ILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP----HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-- 430 (701)
Q Consensus 357 I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~----h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~-- 430 (701)
..+|.|..+..+++ +..+ +.+.....++.-..+. .++....+.... +. ....++..|.|.. ....++.-
T Consensus 64 l~~I~f~~~~g~iv-G~~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~-~~-~~~l~~~~G~iy~-T~DgG~tW~~ 138 (302)
T PF14870_consen 64 LNSISFDGNEGWIV-GEPG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALG-DG-SAELAGDRGAIYR-TTDGGKTWQA 138 (302)
T ss_dssp EEEEEEETTEEEEE-EETT-EEEEESSTTSS-EE----TT-SS-EEEEEEEE-TT-EEEEEETT--EEE-ESSTTSSEEE
T ss_pred EEEEEecCCceEEE-cCCc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcC-CC-cEEEEcCCCcEEE-eCCCCCCeeE
Confidence 55667754434443 4444 3334444444333332 233344454444 33 3333444554332 22233321
Q ss_pred EEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCc
Q 005352 431 DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQ 510 (701)
Q Consensus 431 ~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~ 510 (701)
........+..+..+++|++++++..-....-||--..... .+ ......+|..+.|.| ++.+.+ ....+.
T Consensus 139 ~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~------~~--~r~~~~riq~~gf~~-~~~lw~-~~~Gg~ 208 (302)
T PF14870_consen 139 VVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQ------PH--NRNSSRRIQSMGFSP-DGNLWM-LARGGQ 208 (302)
T ss_dssp EE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-E------EE--E--SSS-EEEEEE-T-TS-EEE-EETTTE
T ss_pred cccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccce------EE--ccCccceehhceecC-CCCEEE-EeCCcE
Confidence 22334567888899999999988876555567775433221 11 222347899999999 455544 448899
Q ss_pred EEEEeCCccceeeec----c-cCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 511 VRILQGPNVIGKYKG----L-RRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 511 I~iwd~~~~~~~~~~----~-~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
|++=+.......+.. . ...-.+..++|.+++...++|+ .|.+ +...+.++
T Consensus 209 ~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGk 263 (302)
T PF14870_consen 209 IQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGK 263 (302)
T ss_dssp EEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTTS
T ss_pred EEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCc
Confidence 998873322222211 1 2334589999999888777665 4433 34445554
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=87.52 E-value=15 Score=35.06 Aligned_cols=110 Identities=13% Similarity=0.131 Sum_probs=70.3
Q ss_pred EEEEEecCCeEEEEECCCcEEEEECC--CCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcC---C---cEEEE-eCCCC-
Q 005352 358 LDLSWSKNNYLLSASIDKTVRLWRVG--NDHCLRVFPHSNYVTCVHFNPVDDNYFISGSID---G---KVRIW-AVLSC- 427 (701)
Q Consensus 358 ~~l~~s~~~~l~s~s~dg~I~iWd~~--~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~d---g---~v~iw-d~~~~- 427 (701)
..++-...+.|+.+.....|.+|++. ..+.+..|..-+.|..+.++. .|+++++--.+ . .+|+| |.+..
T Consensus 21 ~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~ 99 (215)
T PF14761_consen 21 TAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWRSQK 99 (215)
T ss_pred ceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhhhhc
Confidence 34444454444444666789999988 445667787779999999999 89999986432 2 56776 22111
Q ss_pred ---cEE--E---------------------EecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCe
Q 005352 428 ---HVV--D---------------------WVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNH 469 (701)
Q Consensus 428 ---~~~--~---------------------~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~ 469 (701)
+.+ . -.....++.+++..|-...|++|+. +++.+|.+....
T Consensus 100 ~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~-~~l~lf~l~~~~ 166 (215)
T PF14761_consen 100 EENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCG-NKLVLFTLKYQT 166 (215)
T ss_pred ccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcC-CEEEEEEEEEEE
Confidence 100 1 1123456788888886556666664 678888876443
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.30 E-value=15 Score=34.85 Aligned_cols=86 Identities=12% Similarity=0.177 Sum_probs=51.8
Q ss_pred eEEEEECCCcEEEEECCCCeeeeeec---CC---CCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecC-----
Q 005352 367 YLLSASIDKTVRLWRVGNDHCLRVFP---HS---NYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDI----- 435 (701)
Q Consensus 367 ~l~s~s~dg~I~iWd~~~~~~~~~~~---h~---~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~----- 435 (701)
.|+.+....+++.-|..+.....+.. .. ..++-+.|- ++.+.+-.-.+..|...+..+++++.++..
T Consensus 142 ~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V--dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~ 219 (262)
T COG3823 142 NLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV--DGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLK 219 (262)
T ss_pred ceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee--ccEEEEeeeeecceEEEcCCCCcEEEEEEccCCch
Confidence 56666666677777766654444332 12 233445554 566666665666677778888888876643
Q ss_pred --------CCcEEEEEEeeCCCeEEEE
Q 005352 436 --------RQIVTAVCYRPDGQGGIVG 454 (701)
Q Consensus 436 --------~~~i~~i~~sp~g~~l~~g 454 (701)
....+.|++.|++..++..
T Consensus 220 ~~~~~~~~~nvlNGIA~~~~~~r~~iT 246 (262)
T COG3823 220 ELNLDKSNDNVLNGIAHDPQQDRFLIT 246 (262)
T ss_pred hcCccccccccccceeecCcCCeEEEe
Confidence 2346778888877444443
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=86.97 E-value=14 Score=42.83 Aligned_cols=82 Identities=15% Similarity=0.141 Sum_probs=53.4
Q ss_pred CcEEEEEEeeCCCeEEEEecCCcEEEEECCC----C-----eeeee-eeEEe--ecccCCCCCCeeEEEEecC--CCCEE
Q 005352 437 QIVTAVCYRPDGQGGIVGSMMGDCRFYNVSD----N-----HLELD-AEICV--HSKKKAPCKRITGFQFLPQ--DSSKV 502 (701)
Q Consensus 437 ~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~----~-----~~~~~-~~~~~--~~~~~~~~~~i~~l~~~p~--~~~~l 502 (701)
..|..|.++|+|+.++..+..|.+.+.=.+. + +.... ..+.+ ..........|..+.|+|. ++..|
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 4588999999999999988866544332221 1 11000 01111 1112334567899999995 36899
Q ss_pred EEEECCCcEEEEeCCc
Q 005352 503 MVSCADSQVRILQGPN 518 (701)
Q Consensus 503 ~~~s~dg~I~iwd~~~ 518 (701)
++-..|+.+|+||+..
T Consensus 165 ~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISD 180 (717)
T ss_pred EEEecCCEEEEEecCC
Confidence 9999999999999864
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=86.72 E-value=4.1 Score=39.64 Aligned_cols=63 Identities=17% Similarity=0.142 Sum_probs=49.3
Q ss_pred CCCEEEEEECCCcEEEEeCCccceeeec------c--------cCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 005352 498 DSSKVMVSCADSQVRILQGPNVIGKYKG------L--------RRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGH 561 (701)
Q Consensus 498 ~~~~l~~~s~dg~I~iwd~~~~~~~~~~------~--------~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~ 561 (701)
.+.++++.+.+|.+++||+.+....++. . .....|..+.++.+|.-|++-+ +|..+.|+.+-+
T Consensus 21 ~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L~ 97 (219)
T PF07569_consen 21 NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDLG 97 (219)
T ss_pred CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccccc
Confidence 5788999999999999999875554443 1 3456789999999998888776 588999986544
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[] | Back alignment and domain information |
|---|
Probab=86.62 E-value=72 Score=37.51 Aligned_cols=68 Identities=12% Similarity=0.008 Sum_probs=49.5
Q ss_pred CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEe----c----------------CCCcEEEEEEeeCCCeEE
Q 005352 393 HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV----D----------------IRQIVTAVCYRPDGQGGI 452 (701)
Q Consensus 393 h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~----~----------------~~~~i~~i~~sp~g~~l~ 452 (701)
....|.+++... -+.+++....||+|.++|-.+-+.+... . .-..+..++|+|++..++
T Consensus 258 ~~~~V~si~~~~-~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v 336 (753)
T PF11635_consen 258 LNKRVVSITSPE-LDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLV 336 (753)
T ss_pred cCCeEEEEEecc-cCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEE
Confidence 345677777766 6778999999999999998776444222 1 111334578999999999
Q ss_pred EEecCCcEE
Q 005352 453 VGSMMGDCR 461 (701)
Q Consensus 453 ~gs~dg~v~ 461 (701)
.-..+|.+.
T Consensus 337 ~~~~~~~~~ 345 (753)
T PF11635_consen 337 QIDEDGKTK 345 (753)
T ss_pred EEecCCCce
Confidence 988888866
|
It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM. |
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=86.54 E-value=4.8 Score=39.19 Aligned_cols=72 Identities=15% Similarity=0.196 Sum_probs=51.6
Q ss_pred CCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEE-------e--------cCCCcEEEEEEeeCCCeEEEEecCC
Q 005352 394 SNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDW-------V--------DIRQIVTAVCYRPDGQGGIVGSMMG 458 (701)
Q Consensus 394 ~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~-------~--------~~~~~i~~i~~sp~g~~l~~gs~dg 458 (701)
..++..+. . .++++++...+|.+++||+.+++.+.. . .....|..+.++.+|.-+++-+ +|
T Consensus 12 gs~~~~l~--~-~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng 87 (219)
T PF07569_consen 12 GSPVSFLE--C-NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NG 87 (219)
T ss_pred CCceEEEE--e-CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CC
Confidence 34444444 3 678899999999999999998875521 1 2445688888888887766554 58
Q ss_pred cEEEEECCCCe
Q 005352 459 DCRFYNVSDNH 469 (701)
Q Consensus 459 ~v~i~d~~~~~ 469 (701)
..+.|+..-..
T Consensus 88 ~~y~y~~~L~~ 98 (219)
T PF07569_consen 88 DSYSYSPDLGC 98 (219)
T ss_pred CEEEeccccce
Confidence 88888876543
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=86.09 E-value=25 Score=36.72 Aligned_cols=107 Identities=7% Similarity=0.037 Sum_probs=61.7
Q ss_pred ccCeEEEEEecCCeEEEEECCCcEEEEECCCCeeeeeec-----CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCc
Q 005352 354 SGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP-----HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH 428 (701)
Q Consensus 354 ~~~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~-----h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~ 428 (701)
...++++.+.+++.++..+..|.+++=....+..-.... ....+..+.+.| ++..+++ +.+|.+. .....++
T Consensus 214 ~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~-~~~~~~~-G~~G~v~-~S~d~G~ 290 (334)
T PRK13684 214 SRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRT-PGEIWAG-GGNGTLL-VSKDGGK 290 (334)
T ss_pred cccceeeeEcCCCCEEEEecCCEEEEccCCCCCccccccCCccccccceeeEEEcC-CCCEEEE-cCCCeEE-EeCCCCC
Confidence 356788888888855555667776543334443322222 123578889988 6665554 4567554 3444444
Q ss_pred EEEEe----cCCCcEEEEEEeeCCCeEEEEecCCcEEEEE
Q 005352 429 VVDWV----DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYN 464 (701)
Q Consensus 429 ~~~~~----~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d 464 (701)
.-... ......+.+.|..+++.+++| ..|.|..|+
T Consensus 291 tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~~G~il~~~ 329 (334)
T PRK13684 291 TWEKDPVGEEVPSNFYKIVFLDPEKGFVLG-QRGVLLRYV 329 (334)
T ss_pred CCeECCcCCCCCcceEEEEEeCCCceEEEC-CCceEEEec
Confidence 33222 223457778887776665554 568777665
|
|
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=86.04 E-value=46 Score=34.51 Aligned_cols=103 Identities=12% Similarity=0.153 Sum_probs=54.6
Q ss_pred eEEEEECC-----CcEEEEECCCCee---eeeec---CCCCeEEEEEeeCCCCEEEEEEcC-----CcEEEEeCCCCcEE
Q 005352 367 YLLSASID-----KTVRLWRVGNDHC---LRVFP---HSNYVTCVHFNPVDDNYFISGSID-----GKVRIWAVLSCHVV 430 (701)
Q Consensus 367 ~l~s~s~d-----g~I~iWd~~~~~~---~~~~~---h~~~V~~l~f~p~~~~~l~sgs~d-----g~v~iwd~~~~~~~ 430 (701)
.++.|+.+ ..+..+|+.+.+. ...+. ....-.+++.. ++++++.|+.. ..+..||+.+.+-.
T Consensus 75 lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~--~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~ 152 (323)
T TIGR03548 75 IYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK--DGTLYVGGGNRNGKPSNKSYLFNLETQEWF 152 (323)
T ss_pred EEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE--CCEEEEEeCcCCCccCceEEEEcCCCCCee
Confidence 55556654 3466777766553 12222 11111222222 56777777642 35888898876544
Q ss_pred EEecCC--CcEEEEEEeeCCCeEEEEecCC----cEEEEECCCCeee
Q 005352 431 DWVDIR--QIVTAVCYRPDGQGGIVGSMMG----DCRFYNVSDNHLE 471 (701)
Q Consensus 431 ~~~~~~--~~i~~i~~sp~g~~l~~gs~dg----~v~i~d~~~~~~~ 471 (701)
...... ......+...+++..+.|+.++ .+..||+.+++..
T Consensus 153 ~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~ 199 (323)
T TIGR03548 153 ELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQ 199 (323)
T ss_pred ECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeE
Confidence 332211 1122233344677777777654 3568898887654
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=85.80 E-value=48 Score=34.50 Aligned_cols=162 Identities=15% Similarity=0.165 Sum_probs=89.7
Q ss_pred CCeEEEEEeeCCCCEEEEEEcCCc------EEEEeCCC-----CcE-----EEEecCCC--------cEEEEEEeeCCCe
Q 005352 395 NYVTCVHFNPVDDNYFISGSIDGK------VRIWAVLS-----CHV-----VDWVDIRQ--------IVTAVCYRPDGQG 450 (701)
Q Consensus 395 ~~V~~l~f~p~~~~~l~sgs~dg~------v~iwd~~~-----~~~-----~~~~~~~~--------~i~~i~~sp~g~~ 450 (701)
+.+..|.+.| ++..+++.+.+|. +..+++.. ..+ ..+....+ ..-+|++.++|.+
T Consensus 20 GGlSgl~~~~-~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 20 GGLSGLDYDP-DDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred CcEeeEEEeC-CCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 4567788887 5566777777777 55555443 111 11111111 3447888677777
Q ss_pred EEEEecC------CcEEEEECCCCeeeeeeeEEeec-------ccCCCCCCeeEEEEecCCCCEEEEEEC-----CC--c
Q 005352 451 GIVGSMM------GDCRFYNVSDNHLELDAEICVHS-------KKKAPCKRITGFQFLPQDSSKVMVSCA-----DS--Q 510 (701)
Q Consensus 451 l~~gs~d------g~v~i~d~~~~~~~~~~~~~~~~-------~~~~~~~~i~~l~~~p~~~~~l~~~s~-----dg--~ 510 (701)
+++.-.+ ..|..++.. +.......+.... ........+-+++++| ++..|++... |+ .
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~-dG~~l~~~~E~~l~~d~~~~ 176 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSP-DGRTLFAAMESPLKQDGPRA 176 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECC-CCCEEEEEECccccCCCccc
Confidence 7666556 678888876 4432222111111 2334567889999999 5665555433 22 1
Q ss_pred -------EEEE--eCCc-c--ce--eeeccc-----CCCCeEEEEEecCCCEEEEEe-----CCCcEEEEeCC
Q 005352 511 -------VRIL--QGPN-V--IG--KYKGLR-----RSGNQLSACFTSDGKHIVSAG-----EDSNVYMWNCI 559 (701)
Q Consensus 511 -------I~iw--d~~~-~--~~--~~~~~~-----~~~~v~~l~~s~dg~~l~sgs-----~Dg~I~iWd~~ 559 (701)
++|+ |..+ . .. .|.... ....+..+.+-+++++|+-=- ....++|+.+.
T Consensus 177 ~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~ 249 (326)
T PF13449_consen 177 NPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVD 249 (326)
T ss_pred ccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEE
Confidence 4554 4433 1 12 222221 356788899999998776431 23445555544
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=84.67 E-value=17 Score=39.05 Aligned_cols=139 Identities=14% Similarity=0.202 Sum_probs=82.2
Q ss_pred eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeC-------CCCEEEEEEcCCcEEEEeCCC-CcEEEEecCCCc
Q 005352 367 YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPV-------DDNYFISGSIDGKVRIWAVLS-CHVVDWVDIRQI 438 (701)
Q Consensus 367 ~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~-------~~~~l~sgs~dg~v~iwd~~~-~~~~~~~~~~~~ 438 (701)
.+..++.-..++--|++.|+.+........| -++|.|. +...|+ |-.+..|.-.|.+- +..+.......-
T Consensus 482 i~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gNKi~v~esKdY 559 (776)
T COG5167 482 IYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGNKIKVVESKDY 559 (776)
T ss_pred EEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEE-eecccceEEecccccCCceeeeeehhc
Confidence 4556666677888899999999888855555 6778771 223344 44455555556543 222222222222
Q ss_pred EEEEEEe----eCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEE
Q 005352 439 VTAVCYR----PDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRIL 514 (701)
Q Consensus 439 i~~i~~s----p~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iw 514 (701)
.+.-.|+ ....++++++..|.|++||--.... ..........|..+.... ++.++++.+.. .+.+.
T Consensus 560 ~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rA--------KtalP~lG~aIk~idvta-~Gk~ilaTCk~-yllL~ 629 (776)
T COG5167 560 KTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRA--------KTALPGLGDAIKHIDVTA-NGKHILATCKN-YLLLT 629 (776)
T ss_pred cccccccccccccCceEEEecCCCceeeehhhcchh--------hhcCcccccceeeeEeec-CCcEEEEeecc-eEEEE
Confidence 2222222 2345899999999999999643221 111233446678888887 67777766653 56666
Q ss_pred eCC
Q 005352 515 QGP 517 (701)
Q Consensus 515 d~~ 517 (701)
|++
T Consensus 630 d~~ 632 (776)
T COG5167 630 DVP 632 (776)
T ss_pred ecc
Confidence 643
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.21 E-value=62 Score=34.48 Aligned_cols=115 Identities=14% Similarity=0.124 Sum_probs=74.0
Q ss_pred cCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-----CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeC
Q 005352 351 HGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-----HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAV 424 (701)
Q Consensus 351 ~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-----h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~ 424 (701)
....++|.+|.|++|+ .|+.--.+++|.+.+....+....+. .+..|....|.. ..-++.....| +-+|..
T Consensus 63 m~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~--s~e~A~i~~~G-~e~y~v 139 (657)
T KOG2377|consen 63 MDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTS--STEIAFITDQG-IEFYQV 139 (657)
T ss_pred ecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEec--CeeEEEEecCC-eEEEEE
Confidence 4456799999999999 88888889999999985554443332 234588888985 35555555443 666655
Q ss_pred CC--CcEEEEecCCCcEEEEEEeeCCCeEEEEec--CCcEEEEECCCC
Q 005352 425 LS--CHVVDWVDIRQIVTAVCYRPDGQGGIVGSM--MGDCRFYNVSDN 468 (701)
Q Consensus 425 ~~--~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~--dg~v~i~d~~~~ 468 (701)
.. ..+.....+.-.|.-..|.++.+.++.++. .+.+.=+.++++
T Consensus 140 ~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 140 LPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred chhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence 33 222233455667888888888776555443 334444444443
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.98 E-value=28 Score=39.30 Aligned_cols=194 Identities=11% Similarity=0.117 Sum_probs=95.7
Q ss_pred CeEEEEEecCC--eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEE
Q 005352 356 EILDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDW 432 (701)
Q Consensus 356 ~I~~l~~s~~~--~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~ 432 (701)
...++..+|.. -+. +.--.|+|+++ +|+.+..+. ....+-.+-|+ +...|++...+|++++|++.....-..
T Consensus 45 GpIAV~r~p~~~~~~~--~a~~~I~If~~-sG~lL~~~~w~~~~lI~mgWs--~~eeLI~v~k~g~v~Vy~~~ge~ie~~ 119 (829)
T KOG2280|consen 45 GPIAVTRSPSKLVPLY--SARPYIRIFNI-SGQLLGRILWKHGELIGMGWS--DDEELICVQKDGTVHVYGLLGEFIESN 119 (829)
T ss_pred CceEEEeccccccccc--ccceeEEEEec-cccchHHHHhcCCCeeeeccc--CCceEEEEeccceEEEeecchhhhccc
Confidence 34455555544 222 33346888886 455555443 33478889998 456788888999999999865432221
Q ss_pred -e---cCCCcEEEEEEeeCCCeEEEEecCCcEEEEE-CCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCC--CEEEEE
Q 005352 433 -V---DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYN-VSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDS--SKVMVS 505 (701)
Q Consensus 433 -~---~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d-~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~--~~l~~~ 505 (701)
. .....|.-+.+..+| +++-..+|.+.+-. ........ ..... .....-++....++.. ..++-.
T Consensus 120 svg~e~~~~~I~ec~~f~~G--Vavlt~~g~v~~i~~~~~~~~~~-----~~diP-~~~~~~~~Wt~~~~~~~~~~ll~v 191 (829)
T KOG2280|consen 120 SVGFESQMSDIVECRFFHNG--VAVLTVSGQVILINGVEEPKLRK-----MPDIP-YNELPKSCWTVFQPHRQSTILLDV 191 (829)
T ss_pred ccccccccCceeEEEEecCc--eEEEecCCcEEEEcCCCcchhhh-----CCCCC-CccCCCcceeEecCCCcceeEEee
Confidence 1 112234444444444 45555556554433 22211110 00000 0001112333222111 111111
Q ss_pred ECCCcEEEEeCCcc-ceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 506 CADSQVRILQGPNV-IGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 506 s~dg~I~iwd~~~~-~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
...--..++..... ............+..++.||+.++|+-=..+|.|.+-..+..+
T Consensus 192 ~~~v~~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~ 249 (829)
T KOG2280|consen 192 DVAVGLHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQ 249 (829)
T ss_pred chhhhhcccceecccccccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhh
Confidence 10000011111111 1111111134678889999999999999999999998876554
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.93 E-value=84 Score=35.77 Aligned_cols=39 Identities=8% Similarity=0.043 Sum_probs=32.1
Q ss_pred CCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeee
Q 005352 435 IRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELD 473 (701)
Q Consensus 435 ~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~ 473 (701)
....+..+.++|+.++|+.-+..|.+.+-+.+..+...+
T Consensus 215 ~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce 253 (829)
T KOG2280|consen 215 PNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCE 253 (829)
T ss_pred CCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhc
Confidence 346788899999999999999999999988876655443
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=83.54 E-value=21 Score=37.32 Aligned_cols=112 Identities=19% Similarity=0.204 Sum_probs=58.8
Q ss_pred cEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecC---CCCEEEEEECC------
Q 005352 438 IVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQ---DSSKVMVSCAD------ 508 (701)
Q Consensus 438 ~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~---~~~~l~~~s~d------ 508 (701)
..++|+|.|+|+.++ +...|.|++++ ..+... ..................+++++|+ ++.+.++.+..
T Consensus 3 ~P~~~a~~pdG~l~v-~e~~G~i~~~~-~~g~~~-~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~ 79 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLV-AERSGRIWVVD-KDGSLK-TPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGD 79 (331)
T ss_dssp SEEEEEEETTSCEEE-EETTTEEEEEE-TTTEEC-EEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSS
T ss_pred CceEEEEeCCCcEEE-EeCCceEEEEe-CCCcCc-ceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCC
Confidence 467899999986655 56699999999 444431 1111111223445567899999993 23444444421
Q ss_pred C--cEEEEeCCc-------cceeeecc----cCCCCeEEEEEecCCCEEEEEeCCCc
Q 005352 509 S--QVRILQGPN-------VIGKYKGL----RRSGNQLSACFTSDGKHIVSAGEDSN 552 (701)
Q Consensus 509 g--~I~iwd~~~-------~~~~~~~~----~~~~~v~~l~~s~dg~~l~sgs~Dg~ 552 (701)
. .|.-|.... ....+... .....-..|.|.|||.+.++.+..+.
T Consensus 80 ~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~ 136 (331)
T PF07995_consen 80 NDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGN 136 (331)
T ss_dssp EEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTT
T ss_pred cceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCC
Confidence 2 233232211 11111111 12345567999999977777665443
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=83.50 E-value=96 Score=36.08 Aligned_cols=194 Identities=8% Similarity=0.035 Sum_probs=88.7
Q ss_pred EEEEEecCC--eEEEEECC-----CcEEEEECCCC--eeeeeecC-CCCeEEEEEeeCCCCEEEEEEc---CCcEEEEeC
Q 005352 358 LDLSWSKNN--YLLSASID-----KTVRLWRVGND--HCLRVFPH-SNYVTCVHFNPVDDNYFISGSI---DGKVRIWAV 424 (701)
Q Consensus 358 ~~l~~s~~~--~l~s~s~d-----g~I~iWd~~~~--~~~~~~~h-~~~V~~l~f~p~~~~~l~sgs~---dg~v~iwd~ 424 (701)
..++|.+++ .+++...+ ..|..+++.++ +-...+.. .....-..+.+.++.+++..+. ++.+.+++.
T Consensus 175 ~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 175 PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 358899887 44443322 36888888887 33444442 2223322233336676655443 356888884
Q ss_pred C--CCcEEEEecCC-CcEEEEEEeeCCCeEEEEecC--Cc--EEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecC
Q 005352 425 L--SCHVVDWVDIR-QIVTAVCYRPDGQGGIVGSMM--GD--CRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQ 497 (701)
Q Consensus 425 ~--~~~~~~~~~~~-~~i~~i~~sp~g~~l~~gs~d--g~--v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~ 497 (701)
. .+......... .....+. + .+..++.-+.. .. |...++.... ...... .......|..+.+..
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~-~-~~~~ly~~tn~~~~~~~l~~~~~~~~~---~~~~l~---~~~~~~~i~~~~~~~- 325 (686)
T PRK10115 255 ELADAEPFVFLPRRKDHEYSLD-H-YQHRFYLRSNRHGKNFGLYRTRVRDEQ---QWEELI---PPRENIMLEGFTLFT- 325 (686)
T ss_pred cCCCCCceEEEECCCCCEEEEE-e-CCCEEEEEEcCCCCCceEEEecCCCcc---cCeEEE---CCCCCCEEEEEEEEC-
Confidence 2 33322222222 2222222 2 23344443332 22 3333333110 000000 111224677777763
Q ss_pred CCCEEEEEECCCcEEEE--eCCcc-ceeeecccCCCCeEEEEEe--cCC-CEEEEEe---CCCcEEEEeCCCCC
Q 005352 498 DSSKVMVSCADSQVRIL--QGPNV-IGKYKGLRRSGNQLSACFT--SDG-KHIVSAG---EDSNVYMWNCIGHE 562 (701)
Q Consensus 498 ~~~~l~~~s~dg~I~iw--d~~~~-~~~~~~~~~~~~v~~l~~s--~dg-~~l~sgs---~Dg~I~iWd~~~~~ 562 (701)
..++++...++.-+++ +.... ...+.. .....+..+.++ +++ .++++.+ .-+.++.||+.+++
T Consensus 326 -~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 326 -DWLVVEERQRGLTSLRQINRKTREVIGIAF-DDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred -CEEEEEEEeCCEEEEEEEcCCCCceEEecC-CCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 4666666667766555 43221 111111 112223333344 333 3444443 34678888887764
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=83.50 E-value=42 Score=31.93 Aligned_cols=174 Identities=6% Similarity=0.024 Sum_probs=91.4
Q ss_pred eEEEEECC--CcEEEEECCCCeeeeeecCC-CCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEE
Q 005352 367 YLLSASID--KTVRLWRVGNDHCLRVFPHS-NYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVC 443 (701)
Q Consensus 367 ~l~s~s~d--g~I~iWd~~~~~~~~~~~h~-~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~ 443 (701)
++.+.+.- ..|++||+.+++.+..-+-. ..+..=-.....+.+..-.-.+|...++|.++.+.+..+..++.=..++
T Consensus 58 i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeGWgLt 137 (262)
T COG3823 58 ILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEGWGLT 137 (262)
T ss_pred EEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcceeee
Confidence 56666543 46999999999887665422 1111111111022233334468888999999888876666666666665
Q ss_pred EeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEE----------CCCcEEE
Q 005352 444 YRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSC----------ADSQVRI 513 (701)
Q Consensus 444 ~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s----------~dg~I~i 513 (701)
. |+..|+.+....++++-|..+-......+...... +...++-+.|.. +..++-.- ..|.|.-
T Consensus 138 ~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~---pv~~LNELE~Vd--G~lyANVw~t~~I~rI~p~sGrV~~ 210 (262)
T COG3823 138 S--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGV---PVSKLNELEWVD--GELYANVWQTTRIARIDPDSGRVVA 210 (262)
T ss_pred c--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCe---ecccccceeeec--cEEEEeeeeecceEEEcCCCCcEEE
Confidence 4 55667777766777777766544333222222221 112223333321 22222221 2233322
Q ss_pred -EeCCccceeeecc-cCCCCeEEEEEecCC-CEEEEE
Q 005352 514 -LQGPNVIGKYKGL-RRSGNQLSACFTSDG-KHIVSA 547 (701)
Q Consensus 514 -wd~~~~~~~~~~~-~~~~~v~~l~~s~dg-~~l~sg 547 (701)
+|+.......... .+..-.+.+++.|++ ++++||
T Consensus 211 widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 211 WIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 3444333333222 244567889999987 555665
|
|
| >KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=81.61 E-value=79 Score=37.38 Aligned_cols=172 Identities=14% Similarity=0.147 Sum_probs=97.5
Q ss_pred EEEEECCCCeeeeeecCC-----CCeEEEEEeeCCCC-EEEEEE-----------cCCcEEEEeCC-CCcEEEE---ecC
Q 005352 377 VRLWRVGNDHCLRVFPHS-----NYVTCVHFNPVDDN-YFISGS-----------IDGKVRIWAVL-SCHVVDW---VDI 435 (701)
Q Consensus 377 I~iWd~~~~~~~~~~~h~-----~~V~~l~f~p~~~~-~l~sgs-----------~dg~v~iwd~~-~~~~~~~---~~~ 435 (701)
|++.|..+++.+..+.+. -.+..+.|+..+.. ++++|. .+|.++.|++- .+..+.+ ...
T Consensus 855 I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~~ 934 (1205)
T KOG1898|consen 855 IRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTEI 934 (1205)
T ss_pred EEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccCC
Confidence 777787777766666532 23556667653333 333332 13446666552 3343332 333
Q ss_pred CCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEe
Q 005352 436 RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQ 515 (701)
Q Consensus 436 ~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd 515 (701)
.+++.++ .|...++++|- ...+++||+...++........ -...|+.+++ ....+++|...-.|.++-
T Consensus 935 ~~~v~Ai--~~f~~~~Lagv-G~~l~~YdlG~K~lLRk~e~k~------~p~~Is~iqt---~~~RI~VgD~qeSV~~~~ 1002 (1205)
T KOG1898|consen 935 PGPVGAI--CPFQGRVLAGV-GRFLRLYDLGKKKLLRKCELKF------IPNRISSIQT---YGARIVVGDIQESVHFVR 1002 (1205)
T ss_pred CccceEE--eccCCEEEEec-ccEEEEeeCChHHHHhhhhhcc------CceEEEEEee---cceEEEEeeccceEEEEE
Confidence 4555554 46555666554 4789999998776543322221 2356777777 457788888776776655
Q ss_pred CCcc---ceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 005352 516 GPNV---IGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGH 561 (701)
Q Consensus 516 ~~~~---~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~ 561 (701)
.+.. ...+..-.-...|+++.+ -|...+|.|..=|.+.+-.+-..
T Consensus 1003 y~~~~n~l~~fadD~~pR~Vt~~~~-lD~~tvagaDrfGNi~~vR~P~d 1050 (1205)
T KOG1898|consen 1003 YRREDNQLIVFADDPVPRHVTALEL-LDYDTVAGADRFGNIAVVRIPPD 1050 (1205)
T ss_pred EecCCCeEEEEeCCCccceeeEEEE-ecCCceeeccccCcEEEEECCCc
Confidence 4432 222322223445666555 45567888877788877776443
|
|
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=80.28 E-value=99 Score=34.08 Aligned_cols=145 Identities=7% Similarity=0.000 Sum_probs=70.4
Q ss_pred eEEEEECC-------CcEEEEECCCCeeeeeec---CCC--CeEEEEEeeCCCCEEEEEEcC-----CcEEEEeCCCCcE
Q 005352 367 YLLSASID-------KTVRLWRVGNDHCLRVFP---HSN--YVTCVHFNPVDDNYFISGSID-----GKVRIWAVLSCHV 429 (701)
Q Consensus 367 ~l~s~s~d-------g~I~iWd~~~~~~~~~~~---h~~--~V~~l~f~p~~~~~l~sgs~d-----g~v~iwd~~~~~~ 429 (701)
.++.|+.+ ..+.+||+.+.+-...-. ... ........- ++.+++.|+.+ ..+.+||+.+.+-
T Consensus 178 iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~-~~~lYvfGG~~~~~~~ndv~~yD~~t~~W 256 (470)
T PLN02193 178 IYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSI-GSTLYVFGGRDASRQYNGFYSFDTTTNEW 256 (470)
T ss_pred EEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEE-CCEEEEECCCCCCCCCccEEEEECCCCEE
Confidence 55555542 247788887765442211 111 111111122 56677777755 3588899887654
Q ss_pred EEEecC---CCc--EEEEEEeeCCCeEEEEecCC-----cEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCC
Q 005352 430 VDWVDI---RQI--VTAVCYRPDGQGGIVGSMMG-----DCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDS 499 (701)
Q Consensus 430 ~~~~~~---~~~--i~~i~~sp~g~~l~~gs~dg-----~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~ 499 (701)
...... ..+ -.++ ..-+++.++.|+.++ .+..||+.+........ .......... ..++.. ++
T Consensus 257 ~~l~~~~~~P~~R~~h~~-~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~---~~~~~~~R~~-~~~~~~--~g 329 (470)
T PLN02193 257 KLLTPVEEGPTPRSFHSM-AADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCST---PGDSFSIRGG-AGLEVV--QG 329 (470)
T ss_pred EEcCcCCCCCCCccceEE-EEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCC---CCCCCCCCCC-cEEEEE--CC
Confidence 432221 111 1122 223566666776543 46788888766532111 0000011111 122222 45
Q ss_pred CEEEEEECC----CcEEEEeCCcc
Q 005352 500 SKVMVSCAD----SQVRILQGPNV 519 (701)
Q Consensus 500 ~~l~~~s~d----g~I~iwd~~~~ 519 (701)
.+++.++.+ ..+.+||..+.
T Consensus 330 kiyviGG~~g~~~~dv~~yD~~t~ 353 (470)
T PLN02193 330 KVWVVYGFNGCEVDDVHYYDPVQD 353 (470)
T ss_pred cEEEEECCCCCccCceEEEECCCC
Confidence 677777655 45888887643
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=80.19 E-value=74 Score=32.60 Aligned_cols=156 Identities=14% Similarity=0.149 Sum_probs=76.6
Q ss_pred CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCc-EEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeee
Q 005352 393 HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH-VVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLE 471 (701)
Q Consensus 393 h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~-~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~ 471 (701)
..+.+..+..++ ++.+++++.....+.-||--... ..........|.+|.|.|++...+++ ..|.|++=+.......
T Consensus 143 ~~gs~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~ 220 (302)
T PF14870_consen 143 TSGSINDITRSS-DGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGET 220 (302)
T ss_dssp ----EEEEEE-T-TS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEE
T ss_pred CcceeEeEEECC-CCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccc
Confidence 456788888888 88888887655555677754332 22333356789999999997766654 7788888773222211
Q ss_pred eeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEE-EeCC-ccceeeecccCCCCeEEEEEecCCCEEEEEeC
Q 005352 472 LDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRI-LQGP-NVIGKYKGLRRSGNQLSACFTSDGKHIVSAGE 549 (701)
Q Consensus 472 ~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~i-wd~~-~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~ 549 (701)
.... ..........+..++|.+ +....+ ++..|.+.. -|.. +..+.-....-...++.+.|.++.+-++. +.
T Consensus 221 w~~~---~~~~~~~~~~~ld~a~~~-~~~~wa-~gg~G~l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~l-G~ 294 (302)
T PF14870_consen 221 WSEP---IIPIKTNGYGILDLAYRP-PNEIWA-VGGSGTLLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVL-GQ 294 (302)
T ss_dssp E------B-TTSS--S-EEEEEESS-SS-EEE-EESTT-EEEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--S
T ss_pred cccc---cCCcccCceeeEEEEecC-CCCEEE-EeCCccEEEeCCCCccceECccccCCCCceEEEEEcCCCceEEE-CC
Confidence 1110 011123334578899987 444444 555554444 2322 22222222224556888999766554444 56
Q ss_pred CCcEEEE
Q 005352 550 DSNVYMW 556 (701)
Q Consensus 550 Dg~I~iW 556 (701)
+|.|.-|
T Consensus 295 ~G~ll~~ 301 (302)
T PF14870_consen 295 DGVLLRY 301 (302)
T ss_dssp TTEEEEE
T ss_pred CcEEEEe
Confidence 8877655
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 701 | ||||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 5e-17 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 2e-06 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 6e-17 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 6e-17 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 1e-16 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 1e-16 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 1e-16 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 1e-16 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 1e-16 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 2e-16 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 2e-16 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 2e-16 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 2e-16 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 2e-16 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 2e-16 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 2e-16 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 2e-16 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 2e-16 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 2e-16 | ||
| 1r5m_A | 425 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 3e-11 | ||
| 3iz6_a | 380 | Localization Of The Small Subunit Ribosomal Protein | 3e-09 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 8e-09 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 1e-08 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 3e-08 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 3e-08 | ||
| 2pbi_B | 354 | The Multifunctional Nature Of Gbeta5RGS9 REVEALED F | 4e-08 | ||
| 3zey_7 | 318 | High-resolution Cryo-electron Microscopy Structure | 7e-08 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 2e-07 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 3e-06 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 2e-07 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 3e-06 | ||
| 2bcj_B | 340 | Crystal Structure Of G Protein-coupled Receptor Kin | 1e-06 | ||
| 1gg2_B | 340 | G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet | 2e-06 | ||
| 1a0r_B | 340 | Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA- | 2e-06 | ||
| 3sn6_B | 351 | Crystal Structure Of The Beta2 Adrenergic Receptor- | 2e-06 | ||
| 1got_B | 340 | Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer | 2e-06 | ||
| 2ovp_B | 445 | Structure Of The Skp1-Fbw7 Complex Length = 445 | 3e-06 | ||
| 3mkq_A | 814 | Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco | 3e-06 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 4e-06 | ||
| 2ynp_A | 604 | Yeast Betaprime Cop 1-604 With Ktktn Motif Length = | 5e-06 | ||
| 2yno_A | 310 | Yeast Betaprime Cop 1-304h6 Length = 310 | 5e-06 | ||
| 2ynn_A | 304 | Yeast Betaprime Cop 1-304 With Ktktn Motif Length = | 5e-06 | ||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 7e-06 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 2e-05 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 3e-05 | ||
| 1trj_A | 314 | Homology Model Of Yeast Rack1 Protein Fitted Into 1 | 2e-05 | ||
| 3rfh_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 2e-05 | ||
| 3jyv_R | 313 | Structure Of The 40s Rrna And Proteins And PE TRNA | 2e-05 | ||
| 3izb_a | 319 | Localization Of The Small Subunit Ribosomal Protein | 2e-05 | ||
| 3rfg_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 3e-05 | ||
| 3dm0_A | 694 | Maltose Binding Protein Fusion With Rack1 From A. T | 4e-05 | ||
| 3frx_A | 319 | Crystal Structure Of The Yeast Orthologue Of Rack1, | 4e-05 | ||
| 3mks_B | 464 | Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH | 8e-05 | ||
| 1nex_B | 464 | Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp | 8e-05 | ||
| 3odt_A | 313 | Crystal Structure Of Wd40 Beta Propeller Domain Of | 1e-04 | ||
| 1nr0_A | 611 | Two Seven-Bladed Beta-Propeller Domains Revealed By | 3e-04 | ||
| 2pm9_A | 416 | Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O | 3e-04 | ||
| 3fm0_A | 345 | Crystal Structure Of Wd40 Protein Ciao1 Length = 34 | 3e-04 | ||
| 2xzm_R | 343 | Crystal Structure Of The Eukaryotic 40s Ribosomal S | 5e-04 | ||
| 4gga_A | 420 | Structural Analysis Of Human Cdc20 Supports Multi-S | 5e-04 | ||
| 4ggd_A | 431 | Structural Analysis Of Human Cdc20 Supports Multisi | 6e-04 |
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425 | Back alignment and structure |
|
| >pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354 | Back alignment and structure |
|
| >pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340 | Back alignment and structure |
|
| >pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340 | Back alignment and structure |
|
| >pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351 | Back alignment and structure |
|
| >pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445 | Back alignment and structure |
|
| >pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814 | Back alignment and structure |
|
| >pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604 | Back alignment and structure |
|
| >pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310 | Back alignment and structure |
|
| >pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304 | Back alignment and structure |
|
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314 | Back alignment and structure |
|
| >pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319 | Back alignment and structure |
|
| >pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313 | Back alignment and structure |
|
| >pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319 | Back alignment and structure |
|
| >pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319 | Back alignment and structure |
|
| >pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 | Back alignment and structure |
|
| >pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319 | Back alignment and structure |
|
| >pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 | Back alignment and structure |
|
| >pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464 | Back alignment and structure |
|
| >pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313 | Back alignment and structure |
|
| >pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611 | Back alignment and structure |
|
| >pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 416 | Back alignment and structure |
|
| >pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345 | Back alignment and structure |
|
| >pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343 | Back alignment and structure |
|
| >pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420 | Back alignment and structure |
|
| >pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 701 | |||
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.98 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.98 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.98 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.98 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.97 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.97 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.97 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.97 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.97 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.97 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.97 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.97 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.97 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.97 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.97 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.97 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.97 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.97 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.97 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.97 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.96 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.96 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.96 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.96 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.96 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.96 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.96 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.95 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.95 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.95 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.95 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.94 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.94 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.94 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.94 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.94 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.94 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.94 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.94 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.91 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.91 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.9 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.9 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.9 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.89 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.87 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.87 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.86 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.86 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.86 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.85 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.84 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.84 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.83 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.82 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.82 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.82 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.82 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.82 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.82 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.8 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.8 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.8 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.8 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.79 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.79 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.78 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.77 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.77 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.75 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.71 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.7 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.68 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.68 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.67 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.67 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.67 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.67 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.66 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.63 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.63 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.61 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.59 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.58 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.58 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.56 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.56 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.54 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.54 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.54 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.52 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.52 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.51 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.49 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.47 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.46 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.44 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.44 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.43 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.41 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.39 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.38 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.38 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.38 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.38 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.37 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.35 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.33 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.29 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.28 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.27 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.26 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.25 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.25 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.24 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.21 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.21 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.2 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.19 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.18 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.18 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.18 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.15 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.12 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.12 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.11 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.09 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.03 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.02 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 98.98 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 98.98 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 98.94 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.92 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 98.86 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.81 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.8 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.71 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.68 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 98.63 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.62 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 98.61 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.61 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 98.59 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.58 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 98.58 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.58 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.57 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.54 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.53 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.5 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 98.5 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.48 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.48 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 98.47 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.45 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.43 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.43 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.4 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.39 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.34 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.32 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.31 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.31 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.3 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.3 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.3 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.28 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.2 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.1 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.07 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.06 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.06 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.03 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.01 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 97.99 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 97.99 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 97.95 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 97.93 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 97.93 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 97.93 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 97.91 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 97.88 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 97.8 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 97.79 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.79 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 97.79 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 97.76 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 97.76 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 97.75 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.73 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 97.72 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 97.59 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 97.59 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 97.57 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.56 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 97.53 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 97.47 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 97.37 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.36 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.32 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 97.3 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.25 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 97.2 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 97.18 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.05 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 97.05 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.04 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 96.99 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 96.91 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 96.84 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 96.79 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 96.78 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 96.77 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 96.74 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 96.66 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 96.66 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 96.63 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 96.56 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 96.55 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 96.45 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 96.3 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 96.28 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 96.13 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 96.0 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 95.98 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 95.89 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 95.8 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 95.67 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 95.64 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 95.47 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 95.44 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 95.43 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 95.38 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 95.24 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 95.19 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 95.01 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 94.92 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 94.91 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 94.85 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 94.7 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 94.25 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 94.07 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 93.95 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 93.85 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 93.83 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 93.82 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 93.5 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 93.49 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 93.15 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 92.67 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 92.66 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 92.65 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 91.83 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 90.58 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 90.53 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 90.49 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 89.71 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 88.91 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 88.91 | |
| 2rr3_B | 47 | OSBP, oxysterol-binding protein 1; lipid transport | 86.19 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 86.11 | |
| 3uc1_A | 327 | DNA gyrase subunit A; DNA binding protein, topoiso | 84.42 | |
| 3no0_A | 276 | DNA gyrase subunit A; DNA topology, topoisomerase, | 83.7 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 82.39 |
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-43 Score=404.11 Aligned_cols=442 Identities=17% Similarity=0.186 Sum_probs=316.0
Q ss_pred eeecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCee--e
Q 005352 208 RVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDER--L 285 (701)
Q Consensus 208 ~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~--~ 285 (701)
+++++++.+++++ ++.|++|+.... .....+.+|.+.|++++|+|+|++||+|+.||+|+|||+.+++. .
T Consensus 25 ~~spdg~~l~~~~-~~~v~l~~~~~~-------~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~ 96 (611)
T 1nr0_A 25 GNTPAGDKIQYCN-GTSVYTVPVGSL-------TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILK 96 (611)
T ss_dssp EECTTSSEEEEEE-TTEEEEEETTCS-------SCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEE
T ss_pred eeCCCCCEEEeCC-CCEEEEecCCCc-------ccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceee
Confidence 4556666777765 679999987532 12346788999999999999999999999999999999875432 2
Q ss_pred eeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeec-CCccEEEcCCccccccCCCeEEEcCCccCeEEEEEec
Q 005352 286 TEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRT-SESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK 364 (701)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~ 364 (701)
..+..+.. .+..+.+++.+..++...... ....+..++. ......+.+|...|.+++|+|
T Consensus 97 ~~~~~~~~-------------~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~------~~~~~~l~gh~~~v~~v~f~p 157 (611)
T 1nr0_A 97 TTIPVFSG-------------PVKDISWDSESKRIAAVGEGRERFGHVFLFDT------GTSNGNLTGQARAMNSVDFKP 157 (611)
T ss_dssp EEEECSSS-------------CEEEEEECTTSCEEEEEECCSSCSEEEEETTT------CCBCBCCCCCSSCEEEEEECS
T ss_pred EeecccCC-------------ceEEEEECCCCCEEEEEECCCCceeEEEEeeC------CCCcceecCCCCCceEEEECC
Confidence 23333333 334444444443333221111 1123333332 244567789999999999999
Q ss_pred CC--eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEe--------
Q 005352 365 NN--YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV-------- 433 (701)
Q Consensus 365 ~~--~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~-------- 433 (701)
++ .|++++.|++|++||..+++++..+. |...|++++|+| ++++|++++.|++|++||+.+++.+..+
T Consensus 158 ~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fsp-dg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~ 236 (611)
T 1nr0_A 158 SRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNP-DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNV 236 (611)
T ss_dssp SSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSC
T ss_pred CCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECC-CCCEEEEEECCCcEEEEECCCCcEeeeecccccccc
Confidence 97 69999999999999999998888886 999999999999 9999999999999999999998877554
Q ss_pred cCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEE-----------------------------------e
Q 005352 434 DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEIC-----------------------------------V 478 (701)
Q Consensus 434 ~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~-----------------------------------~ 478 (701)
.|...|.+++|+|++++|++++.|++|++||+.+++........ .
T Consensus 237 ~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~ 316 (611)
T 1nr0_A 237 AHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSI 316 (611)
T ss_dssp SSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEE
T ss_pred ccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCc
Confidence 58899999999999999999999999999999987654332110 0
Q ss_pred ecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeec---------------------------------
Q 005352 479 HSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKG--------------------------------- 525 (701)
Q Consensus 479 ~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~--------------------------------- 525 (701)
......|...|++++|+| ++.+|++++.|+.|++||+.+.......
T Consensus 317 ~~~~~gh~~~v~~l~~sp-dg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~ 395 (611)
T 1nr0_A 317 DQVRYGHNKAITALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPA 395 (611)
T ss_dssp EEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECS
T ss_pred ceEEcCCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeec
Confidence 111245778999999999 7999999999999999997642211000
Q ss_pred -------------------------------------------------ccCCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 005352 526 -------------------------------------------------LRRSGNQLSACFTSDGKHIVSAGEDSNVYMW 556 (701)
Q Consensus 526 -------------------------------------------------~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iW 556 (701)
..+...+.+++|+|+|++|++|+.|+.|++|
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lw 475 (611)
T 1nr0_A 396 GGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVY 475 (611)
T ss_dssp SSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEE
T ss_pred CCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEE
Confidence 0123457889999999999999999999999
Q ss_pred eCCCCCCCC---ccccccccccccccCCceEE-ecCCCC-CCCCCCC-CCccc----cCCCCCCCccccCCCccccCccc
Q 005352 557 NCIGHEEPA---HDQAKTIRSLERFTTNASIA-IPWCGL-KCGNAEK-EPQLH----VSDDDSPENLAFAPARFSLGQEY 626 (701)
Q Consensus 557 d~~~~~~~~---~~~~~~~~~~~~~~~~~~~a-~~~~~~-~~~~~~~-~~~~~----~~~~~~~~~l~~sp~~~~~~~~~ 626 (701)
++.++.... ......+..+...+.+..++ ....+. ..|+... ..... ..+...+..++|+|+ +..+
T Consensus 476 d~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspd----g~~l 551 (611)
T 1nr0_A 476 KLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPD----NVRL 551 (611)
T ss_dssp EEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTT----SSEE
T ss_pred EccCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCC----CCEE
Confidence 997653110 01112233333333322222 122221 3343332 11111 114456788999998 7889
Q ss_pred cccCCCCcccCCCCccCCC-C-ccccccccchhhhhhhhhcccccccccCCCccEEEEecCCCeEeEEee
Q 005352 627 VFESFPKGCATWPEEKLPA-L-SQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFLN 694 (701)
Q Consensus 627 ~~~s~d~~~~~W~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivTgg~DG~Irvw~~ 694 (701)
++++.|+.+++|+.+.... + ..+.+|. ...+.+++++++ ++ |+||+.||+||+|+.
T Consensus 552 asgs~D~~v~lW~~~~~~~~~~~~~~~h~----------~~~v~~v~fs~d-~~-l~s~~~D~~i~lW~~ 609 (611)
T 1nr0_A 552 ATGSLDNSVIVWNMNKPSDHPIIIKGAHA----------MSSVNSVIWLNE-TT-IVSAGQDSNIKFWNV 609 (611)
T ss_dssp EEEETTSCEEEEETTCTTSCCEEETTSST----------TSCEEEEEEEET-TE-EEEEETTSCEEEEEC
T ss_pred EEEECCCcEEEEECCCcccccchhhccCc----------ccCeeEEEEcCC-CE-EEEecCCCCEEEEec
Confidence 9999999999999876542 2 2232330 246788888888 88 999999999999984
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-41 Score=378.34 Aligned_cols=457 Identities=23% Similarity=0.286 Sum_probs=324.8
Q ss_pred cccCcceeee--cCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEE
Q 005352 201 DKQGEGERVR--LNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQ 278 (701)
Q Consensus 201 ~~~~~~~~~~--~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd 278 (701)
.|.+.+.++. +++..+++++.|+.|+||+... ...+.+.+|.+.|++|+|+|||++||+++.|++|+|||
T Consensus 14 GH~~~V~~~a~spdg~~las~~~d~~v~iWd~~~--------~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd 85 (577)
T 2ymu_A 14 AHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG--------QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 85 (577)
T ss_dssp CCSSCEEEEEECTTSSCEEEEETTSEEEEECTTS--------CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCC--------CEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 4677776654 5567888999999999998432 12246889999999999999999999999999999999
Q ss_pred eecCeeeeeecCCCCCCceeEEeeccCCCc----------------------------ceeeeccccceee---------
Q 005352 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSEL----------------------------KPLFMDKEKISIL--------- 321 (701)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~--------- 321 (701)
+ +++.+..+..+...+.++.|.++....+ ..+.+.+....+.
T Consensus 86 ~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 164 (577)
T 2ymu_A 86 R-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVK 164 (577)
T ss_dssp T-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEE
T ss_pred C-CCCEEEEEECCCCCEEEEEECCCCCEEEEEcCCCceeecccccceeeeccCCCCceeeeeeecCCccceeccccccee
Confidence 6 5667777776666666655554322110 0000000000000
Q ss_pred -------------------EEeeecCCccEEEc--CC---ccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCc
Q 005352 322 -------------------KSLRRTSESACVVF--PP---KVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKT 376 (701)
Q Consensus 322 -------------------~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~ 376 (701)
.......+...++. .. .+|+...+.+..+.+|...|.+++|+|++ +|++++.|+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~ 244 (577)
T 2ymu_A 165 LWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT 244 (577)
T ss_dssp EECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSC
T ss_pred ccccceeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeCCCcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCE
Confidence 00000000000000 00 12333456678889999999999999999 9999999999
Q ss_pred EEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEe
Q 005352 377 VRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGS 455 (701)
Q Consensus 377 I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs 455 (701)
|++||.. ++.+..+. |...|++++|+| ++++|++++.|+.|++||...........|...|.+++|+|+++.|++++
T Consensus 245 i~~w~~~-~~~~~~~~~~~~~v~~v~~~~-d~~~l~~~~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~ 322 (577)
T 2ymu_A 245 VKLWNRN-GQLLQTLTGHSSSVNGVAFRP-DGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASAS 322 (577)
T ss_dssp EEEECTT-SCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred EEEEeCC-CCEEEEEecCCCCEEEEEEcC-CCCEEEEEeCCCEEEEEeCCCcEEEEEecCCCCeEEEEECCCCCEEEEEe
Confidence 9999965 45555554 899999999999 99999999999999999987655556677899999999999999999999
Q ss_pred cCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEE
Q 005352 456 MMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSA 535 (701)
Q Consensus 456 ~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l 535 (701)
.|+.|++||+....... ...+...+.+++|+| ++.++++++.|+.|++||... ........|...|.++
T Consensus 323 ~d~~i~~w~~~~~~~~~---------~~~~~~~v~~~~~s~-~g~~l~~~~~dg~v~~~~~~~-~~~~~~~~~~~~v~~~ 391 (577)
T 2ymu_A 323 DDKTVKLWNRNGQHLQT---------LTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVRGV 391 (577)
T ss_dssp TTSCEEEEETTSCEEEE---------ECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTC-CEEEEEECCSSCEEEE
T ss_pred CCCeEEEEeCCCCeeEE---------EeCCCCCEEEEEECC-CCCEEEEEeCCCEEEEEcCCC-CEEEEecCCCCCeEEE
Confidence 99999999987654321 234567899999999 789999999999999999653 2233334588999999
Q ss_pred EEecCCCEEEEEeCCCcEEEEeCCCCCCCC-ccccccccccccccCCceEEe-cCCCC-CCCCCCCCCc-cccCCCCCCC
Q 005352 536 CFTSDGKHIVSAGEDSNVYMWNCIGHEEPA-HDQAKTIRSLERFTTNASIAI-PWCGL-KCGNAEKEPQ-LHVSDDDSPE 611 (701)
Q Consensus 536 ~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~-~~~~~-~~~~~~~~~~-~~~~~~~~~~ 611 (701)
+|+|++++|++++.|+.|++|+........ ......+..+...+.+..++. ..++. ..|+...... ........+.
T Consensus 392 ~~s~dg~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~ 471 (577)
T 2ymu_A 392 AFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVR 471 (577)
T ss_dssp EECTTSSCEEEEETTSEEEEECTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCEEEEEECCSSCEE
T ss_pred EECCCCCEEEEEeCCCEEEEEeCCCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCCEEEEEcCCCCCEE
Confidence 999999999999999999999964322100 011122233333333222222 22221 3343322111 1123345677
Q ss_pred ccccCCCccccCccccccCCCCcccCCCCccCCCCccccccccchhhhhhhhhcccccccccCCCccEEEEecCCCeEeE
Q 005352 612 NLAFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRS 691 (701)
Q Consensus 612 ~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivTgg~DG~Irv 691 (701)
.++|+|+ +..+++++.|+.+++|+.. ...+..+.+| .+.|.+++++++ |++||||+.||.||+
T Consensus 472 ~~~~spd----~~~las~~~d~~i~iw~~~-~~~~~~~~~h-----------~~~v~~l~~s~d-g~~l~s~~~dg~v~l 534 (577)
T 2ymu_A 472 GVAFSPD----GQTIASASDDKTVKLWNRN-GQLLQTLTGH-----------SSSVRGVAFSPD-GQTIASASDDKTVKL 534 (577)
T ss_dssp EEEECTT----SCEEEEEETTSEEEEEETT-SCEEEEEECC-----------SSCEEEEEECTT-SSCEEEEETTSEEEE
T ss_pred EEEEcCC----CCEEEEEeCCCEEEEEcCC-CCEEEEEeCC-----------CCCEEEEEEcCC-CCEEEEEECcCEEEE
Confidence 8899997 7788899999999999954 4445666555 467888999999 999999999999999
Q ss_pred EeecC
Q 005352 692 FLNYG 696 (701)
Q Consensus 692 w~~~g 696 (701)
|+.-|
T Consensus 535 wd~~~ 539 (577)
T 2ymu_A 535 WNRNG 539 (577)
T ss_dssp ECTTS
T ss_pred EeCCC
Confidence 98544
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-40 Score=371.16 Aligned_cols=396 Identities=24% Similarity=0.338 Sum_probs=304.8
Q ss_pred ccCccee--eecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEe
Q 005352 202 KQGEGER--VRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQV 279 (701)
Q Consensus 202 ~~~~~~~--~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~ 279 (701)
+...+.. +.+++..+++++.|+.|++|+.... ..+.+.+|.+.|.+++|+|++++|++++.|+.|++||.
T Consensus 179 ~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~~~--------~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~ 250 (577)
T 2ymu_A 179 HSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ--------LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR 250 (577)
T ss_dssp CSSCEEEEEECTTSSCEEEEETTSEEEEECTTSC--------EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECT
T ss_pred CCcceeeeeecCCCCEEEEEcCCCEEEEEeCCCc--------EEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeC
Confidence 3444443 4456677888999999999974321 12457789999999999999999999999999999996
Q ss_pred ecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEE
Q 005352 280 VEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILD 359 (701)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~ 359 (701)
+++.+..+..+...+..+.+.+ .+..++. ...+..+.+ |+...+.+..+.+|...|.+
T Consensus 251 -~~~~~~~~~~~~~~v~~v~~~~-------------d~~~l~~---~~~d~~i~~-----w~~~~~~~~~~~~h~~~v~~ 308 (577)
T 2ymu_A 251 -NGQLLQTLTGHSSSVNGVAFRP-------------DGQTIAS---ASDDKTVKL-----WNRNGQLLQTLTGHSSSVWG 308 (577)
T ss_dssp -TSCEEEEECCCSSCEEEEEECT-------------TSSEEEE---EETTSCEEE-----EETTSCEEEEECCCSSCEEE
T ss_pred -CCCEEEEEecCCCCEEEEEEcC-------------CCCEEEE---EeCCCEEEE-----EeCCCcEEEEEecCCCCeEE
Confidence 4455555554444443333332 2222211 112222222 22334667788999999999
Q ss_pred EEEecCC-eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCc
Q 005352 360 LSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQI 438 (701)
Q Consensus 360 l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~ 438 (701)
++|+|++ +|++++.|++|++||+..........|...|.+++|+| ++++|++++.|+.|++||...........|...
T Consensus 309 ~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~ 387 (577)
T 2ymu_A 309 VAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRNGQLLQTLTGHSSS 387 (577)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTCCEEEEEECCSSC
T ss_pred EEECCCCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECC-CCCEEEEEeCCCEEEEEcCCCCEEEEecCCCCC
Confidence 9999999 99999999999999987776655556999999999999 999999999999999999765555567778999
Q ss_pred EEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCc
Q 005352 439 VTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN 518 (701)
Q Consensus 439 i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~ 518 (701)
|++++|+|++++|++++.|+.|++||....... ....|...|++++|+| ++.+|++++.|+.|++||...
T Consensus 388 v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~~~~---------~~~~~~~~v~~~~~s~-d~~~l~~~~~d~~v~~w~~~~ 457 (577)
T 2ymu_A 388 VRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ---------TLTGHSSSVWGVAFSP-DDQTIASASDDKTVKLWNRNG 457 (577)
T ss_dssp EEEEEECTTSSCEEEEETTSEEEEECTTCCEEE---------EEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTS
T ss_pred eEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEE---------EecCCCCCeEEEEECC-CCCEEEEEcCCCEEEEEECCC
Confidence 999999999999999999999999997543211 1234667899999999 789999999999999999753
Q ss_pred cceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCC
Q 005352 519 VIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEK 598 (701)
Q Consensus 519 ~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 598 (701)
........|...|.+++|+|++++|++++.|+.|++|+... + .+..+
T Consensus 458 -~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~-~--------~~~~~----------------------- 504 (577)
T 2ymu_A 458 -QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-Q--------LLQTL----------------------- 504 (577)
T ss_dssp -CEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTS-C--------EEEEE-----------------------
T ss_pred -CEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCC-C--------EEEEE-----------------------
Confidence 23333445889999999999999999999999999999532 2 11111
Q ss_pred CCccccCCCCCCCccccCCCccccCccccccCCCCcccCCCCccCCCCccccccccchhhhhhhhhcccccccccCCCcc
Q 005352 599 EPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGL 678 (701)
Q Consensus 599 ~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 678 (701)
..+...+..++|+|+ +..+++++.|+.+++|+.. ...+..+.+| .+.|++++++++ |+
T Consensus 505 -----~~h~~~v~~l~~s~d----g~~l~s~~~dg~v~lwd~~-~~~~~~~~~h-----------~~~v~~~~fs~d-g~ 562 (577)
T 2ymu_A 505 -----TGHSSSVRGVAFSPD----GQTIASASDDKTVKLWNRN-GQLLQTLTGH-----------SSSVWGVAFSPD-GQ 562 (577)
T ss_dssp -----ECCSSCEEEEEECTT----SSCEEEEETTSEEEEECTT-SCEEEEEECC-----------SSCEEEEEECTT-SS
T ss_pred -----eCCCCCEEEEEEcCC----CCEEEEEECcCEEEEEeCC-CCEEEEEcCC-----------CCCEEEEEEcCC-CC
Confidence 011335667889997 6788999999999999953 4556666666 467889999999 99
Q ss_pred EEEEecCCCeEeEEe
Q 005352 679 VIVTAGWDGRIRSFL 693 (701)
Q Consensus 679 ~ivTgg~DG~Irvw~ 693 (701)
+|+|||.||+||+|+
T Consensus 563 ~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 563 TIASASSDKTVKLWN 577 (577)
T ss_dssp CEEEEETTSCEEEEC
T ss_pred EEEEEeCCCEEEEeC
Confidence 999999999999995
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-39 Score=394.33 Aligned_cols=451 Identities=19% Similarity=0.275 Sum_probs=340.1
Q ss_pred cccCccee--eecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEE
Q 005352 201 DKQGEGER--VRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQ 278 (701)
Q Consensus 201 ~~~~~~~~--~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd 278 (701)
.|.+.+.+ +++++..+++++.|+.|+||+..... ....+.+|.+.|.+++|+|+|++||+|+.||.|+|||
T Consensus 613 ~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~-------~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd 685 (1249)
T 3sfz_A 613 PHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGE-------KLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWD 685 (1249)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-------EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred cccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCC-------EEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEE
Confidence 34555554 45566788889999999999976532 2245778999999999999999999999999999999
Q ss_pred eecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeE
Q 005352 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEIL 358 (701)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~ 358 (701)
+.+++.+..+..+.....++.+.+.....+... ...+..+.+++... .+.+..+.+|...|.
T Consensus 686 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s--------------g~~d~~v~vwd~~~----~~~~~~~~~h~~~v~ 747 (1249)
T 3sfz_A 686 SATGKLVHTYDEHSEQVNCCHFTNKSNHLLLAT--------------GSNDFFLKLWDLNQ----KECRNTMFGHTNSVN 747 (1249)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECSSSSCCEEEE--------------EETTSCEEEEETTS----SSEEEEECCCSSCEE
T ss_pred CCCCceEEEEcCCCCcEEEEEEecCCCceEEEE--------------EeCCCeEEEEECCC----cchhheecCCCCCEE
Confidence 999998888877776666666655332221111 12222233332221 245678889999999
Q ss_pred EEEEecCC-eEEEEECCCcEEEEECCCCeeeeee----------------------------------------------
Q 005352 359 DLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVF---------------------------------------------- 391 (701)
Q Consensus 359 ~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~---------------------------------------------- 391 (701)
+++|+|++ +|++++.||+|++||+.+++....+
T Consensus 748 ~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~ 827 (1249)
T 3sfz_A 748 HCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIH 827 (1249)
T ss_dssp EEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETT
T ss_pred EEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEec
Confidence 99999999 9999999999999999776543322
Q ss_pred ----------cCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEE-EEecCCCcEEEEEEeeCCCeEEEEecCCcE
Q 005352 392 ----------PHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDC 460 (701)
Q Consensus 392 ----------~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~-~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v 460 (701)
.|...|.+++|+| ++.++++++.||.|++||+.++..+ ....|...|++++|+|+++.|++++.||.|
T Consensus 828 ~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v 906 (1249)
T 3sfz_A 828 TSGLLAEIHTGHHSTIQYCDFSP-YDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTI 906 (1249)
T ss_dssp TCCEEEEEECSSSSCCCEEEECS-STTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred CCCceeEEcCCCCCceEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeE
Confidence 3667889999999 9999999999999999999998776 455788999999999999999999999999
Q ss_pred EEEECCCCeeee----ee--e------------------EEe-----ecccCCCCCCeeEEEEecCCCCEEEEEECCCcE
Q 005352 461 RFYNVSDNHLEL----DA--E------------------ICV-----HSKKKAPCKRITGFQFLPQDSSKVMVSCADSQV 511 (701)
Q Consensus 461 ~i~d~~~~~~~~----~~--~------------------~~~-----~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I 511 (701)
++|++.+..... .. . ... ..........+.+++|+| ++.++++|+.+|.|
T Consensus 907 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp-~g~~l~~g~~~g~i 985 (1249)
T 3sfz_A 907 RVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSP-HLEYVAFGDEDGAI 985 (1249)
T ss_dssp EEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECT-TSSEEEEEETTSCC
T ss_pred EEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcC-CCCEEEEEcCCCCE
Confidence 999975321000 00 0 000 000112345799999999 78999999999999
Q ss_pred EEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCCCCc-cccccccccccccCCceEEecCCC
Q 005352 512 RILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAH-DQAKTIRSLERFTTNASIAIPWCG 590 (701)
Q Consensus 512 ~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~ 590 (701)
++||..+.........|...|.+++|+|+|++|++++.||.|++|++.+++.... .....+..+........++....+
T Consensus 986 ~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg 1065 (1249)
T 3sfz_A 986 KIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDG 1065 (1249)
T ss_dssp EEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSS
T ss_pred EEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEECCC
Confidence 9999987776666667999999999999999999999999999999998763221 112233334333334444444444
Q ss_pred C-CCCCCCCCCccc--cCCCCCCCccccCCCccccCccccccCCCCcccCCCCccCCCCccccccccchhhhhhhhhccc
Q 005352 591 L-KCGNAEKEPQLH--VSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLSSASALHKSQYKFLKSSC 667 (701)
Q Consensus 591 ~-~~~~~~~~~~~~--~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 667 (701)
. ..|+........ ..+...+..++|+|+ +..+++++.|+.+++|+......+..+.+| .+.+
T Consensus 1066 ~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d----~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h-----------~~~v 1130 (1249)
T 3sfz_A 1066 TVKVWNVITGRIERDFTCHQGTVLSCAISSD----ATKFSSTSADKTAKIWSFDLLSPLHELKGH-----------NGCV 1130 (1249)
T ss_dssp EEEEEETTTTCCCEEEECCSSCCCCEEECSS----SSSCEEECCSSCCCEECSSSSSCSBCCCCC-----------SSCE
T ss_pred cEEEEECCCCceeEEEcccCCcEEEEEECCC----CCEEEEEcCCCcEEEEECCCcceeeeeccC-----------CCcE
Confidence 3 445444333222 224556788899997 778899999999999999988888777666 4578
Q ss_pred ccccccCCCccEEEEecCCCeEeEEee
Q 005352 668 LCTTSSHAWGLVIVTAGWDGRIRSFLN 694 (701)
Q Consensus 668 ~~~~~~~~~g~~ivTgg~DG~Irvw~~ 694 (701)
.+++++++ |.+|+||+.||.|++|+.
T Consensus 1131 ~~~~~s~d-g~~lat~~~dg~i~vwd~ 1156 (1249)
T 3sfz_A 1131 RCSAFSLD-GILLATGDDNGEIRIWNV 1156 (1249)
T ss_dssp EEEEECSS-SSEEEEEETTSCCCEEES
T ss_pred EEEEECCC-CCEEEEEeCCCEEEEEEC
Confidence 88899999 999999999999999984
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-38 Score=342.29 Aligned_cols=286 Identities=19% Similarity=0.331 Sum_probs=246.8
Q ss_pred ceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEE
Q 005352 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (701)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (701)
..+.+|.++|++++|+|++++|++|+.||+|+|||+.+++
T Consensus 102 ~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~---------------------------------------- 141 (410)
T 1vyh_C 102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD---------------------------------------- 141 (410)
T ss_dssp CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCC----------------------------------------
T ss_pred EeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc----------------------------------------
Confidence 4678999999999999999999999999999999997763
Q ss_pred eeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEE
Q 005352 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVH 401 (701)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~ 401 (701)
....+.+|...|.+++|+|++ +|++|+.|++|++||+.+++++..+. |...|.+++
T Consensus 142 ----------------------~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~ 199 (410)
T 1vyh_C 142 ----------------------FERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVS 199 (410)
T ss_dssp ----------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEE
T ss_pred ----------------------EEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEE
Confidence 345678899999999999999 99999999999999999999988876 899999999
Q ss_pred EeeCCCCEEEEEEcCCcEEEEeCCCCcEE-EEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeec
Q 005352 402 FNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHS 480 (701)
Q Consensus 402 f~p~~~~~l~sgs~dg~v~iwd~~~~~~~-~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~ 480 (701)
|+| ++++|++|+.|++|++||++++..+ .+..|...|.+++++|++.+|++|+.|+.|++||+.+......
T Consensus 200 ~~p-~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~------- 271 (410)
T 1vyh_C 200 IMP-NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAE------- 271 (410)
T ss_dssp ECS-SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE-------
T ss_pred EeC-CCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeE-------
Confidence 999 9999999999999999999999877 4557888999999999999999999999999999988765432
Q ss_pred ccCCCCCCeeEEEEecCC-------------------CCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCC
Q 005352 481 KKKAPCKRITGFQFLPQD-------------------SSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDG 541 (701)
Q Consensus 481 ~~~~~~~~i~~l~~~p~~-------------------~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg 541 (701)
...|...|.+++|+|+. +.+|++|+.|+.|++||+.+.........|...|.+++|+|+|
T Consensus 272 -~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g 350 (410)
T 1vyh_C 272 -LREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGG 350 (410)
T ss_dssp -ECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSS
T ss_pred -ecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCC
Confidence 23466789999999842 5689999999999999998777666666689999999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccc
Q 005352 542 KHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFS 621 (701)
Q Consensus 542 ~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~ 621 (701)
++|++|+.||.|++||+.+++... .+ ..+...+..++|+|+
T Consensus 351 ~~l~s~s~D~~i~vwd~~~~~~~~--------~~----------------------------~~h~~~v~~l~~~~~--- 391 (410)
T 1vyh_C 351 KFILSCADDKTLRVWDYKNKRCMK--------TL----------------------------NAHEHFVTSLDFHKT--- 391 (410)
T ss_dssp SCEEEEETTTEEEEECCTTSCCCE--------EE----------------------------ECCSSCEEEEEECSS---
T ss_pred CEEEEEeCCCeEEEEECCCCceEE--------EE----------------------------cCCCCcEEEEEEcCC---
Confidence 999999999999999997765211 11 011234666788886
Q ss_pred cCccccccCCCCcccCCCC
Q 005352 622 LGQEYVFESFPKGCATWPE 640 (701)
Q Consensus 622 ~~~~~~~~s~d~~~~~W~~ 640 (701)
+..+++++.|+.+++|+.
T Consensus 392 -~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 392 -APYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp -SSCEEEEETTSEEEEEC-
T ss_pred -CCEEEEEeCCCcEEEEeC
Confidence 667889999999999985
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-37 Score=323.56 Aligned_cols=285 Identities=18% Similarity=0.323 Sum_probs=243.0
Q ss_pred ecccCcceeeec--CccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEE
Q 005352 200 VDKQGEGERVRL--NEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLW 277 (701)
Q Consensus 200 ~~~~~~~~~~~~--~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iW 277 (701)
..|.+.+.++.+ ++..+++++.|+.|+||+...... ...+..|...|.+++|+|+|++|++|+.|+.|++|
T Consensus 52 ~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~-------~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw 124 (340)
T 1got_B 52 RGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNK-------VHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY 124 (340)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCE-------EEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred cCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCc-------ceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 346667766654 456788999999999998754322 24567899999999999999999999999999999
Q ss_pred EeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCe
Q 005352 278 QVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEI 357 (701)
Q Consensus 278 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I 357 (701)
++.+..... .....+.+|.+.|
T Consensus 125 ~~~~~~~~~----------------------------------------------------------~~~~~~~~h~~~v 146 (340)
T 1got_B 125 NLKTREGNV----------------------------------------------------------RVSRELAGHTGYL 146 (340)
T ss_dssp ETTTCSBSC----------------------------------------------------------EEEEEEECCSSCE
T ss_pred ECccCCCcc----------------------------------------------------------eeEEEecCCCccE
Confidence 987642100 2234567899999
Q ss_pred EEEEEecCCeEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEE-EecC
Q 005352 358 LDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD-WVDI 435 (701)
Q Consensus 358 ~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~-~~~~ 435 (701)
.++.|++++.+++++.|++|++||+.+++++..+. |...|.+++|+| ++++|++|+.|+.|++||++++..+. +..|
T Consensus 147 ~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h 225 (340)
T 1got_B 147 SCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQTFTGH 225 (340)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCSEEEEECCC
T ss_pred EEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECC-CCCEEEEEeCCCcEEEEECCCCeeEEEEcCC
Confidence 99999999999999999999999999999998887 899999999999 99999999999999999999988774 4568
Q ss_pred CCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEe
Q 005352 436 RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQ 515 (701)
Q Consensus 436 ~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd 515 (701)
...|++++|+|++++|++|+.||.|++||++..+..... ....+...|++++|+| ++.+|++|+.|+.|++||
T Consensus 226 ~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~------~~~~~~~~v~~~~~s~-~g~~l~~g~~d~~i~vwd 298 (340)
T 1got_B 226 ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY------SHDNIICGITSVSFSK-SGRLLLAGYDDFNCNVWD 298 (340)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE------CCTTCCSCEEEEEECT-TSSEEEEEETTSEEEEEE
T ss_pred cCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEE------ccCCcccceEEEEECC-CCCEEEEECCCCeEEEEE
Confidence 889999999999999999999999999999987653221 1223345799999999 789999999999999999
Q ss_pred CCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEe
Q 005352 516 GPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWN 557 (701)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd 557 (701)
..+.........|...|.+++|+|+|.+|++|+.|+.|+|||
T Consensus 299 ~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 299 ALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred cccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 987666656666999999999999999999999999999997
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-38 Score=326.04 Aligned_cols=286 Identities=19% Similarity=0.323 Sum_probs=241.7
Q ss_pred eeccCCCcEEEEEEccC----CCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeecccccee
Q 005352 245 EIQAHDGSILTMKFSPD----GQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISI 320 (701)
Q Consensus 245 ~l~~H~~~I~~l~fspd----g~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (701)
.+++|.+.|++++|+|+ +.+|+||+.|++|+||++.....
T Consensus 27 ~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~------------------------------------ 70 (321)
T 3ow8_A 27 QEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL------------------------------------ 70 (321)
T ss_dssp ETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEE------------------------------------
T ss_pred ecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCe------------------------------------
Confidence 45689999999999985 67999999999999999976542
Q ss_pred eEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeE
Q 005352 321 LKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVT 398 (701)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~ 398 (701)
.....+.+|...|.+++|++++ ++++++.|++|++||+.+++++..+. +...+.
T Consensus 71 ------------------------~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~ 126 (321)
T 3ow8_A 71 ------------------------DLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAW 126 (321)
T ss_dssp ------------------------EEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCC
T ss_pred ------------------------eeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEE
Confidence 1234567899999999999998 99999999999999999999988886 778899
Q ss_pred EEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEE-EEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEE
Q 005352 399 CVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEIC 477 (701)
Q Consensus 399 ~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~-~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~ 477 (701)
+++|+| ++++|++++.||.|++||+.+++.. ....+...+.+++|+|++++|++|+.||.|++||+++++....
T Consensus 127 ~~~~sp-dg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~---- 201 (321)
T 3ow8_A 127 TLAFSP-DSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHT---- 201 (321)
T ss_dssp CEEECT-TSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE----
T ss_pred EEEECC-CCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEE----
Confidence 999999 9999999999999999999988766 4456678899999999999999999999999999998865432
Q ss_pred eecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEe
Q 005352 478 VHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWN 557 (701)
Q Consensus 478 ~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd 557 (701)
...+...|.+++|+| ++.+|++++.|+.|++||+...........|...|.+++|+|++++|++++.|+.|++||
T Consensus 202 ----~~~h~~~v~~l~~sp-d~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd 276 (321)
T 3ow8_A 202 ----LEGHAMPIRSLTFSP-DSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWD 276 (321)
T ss_dssp ----ECCCSSCCCEEEECT-TSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred ----EcccCCceeEEEEcC-CCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEe
Confidence 234667899999999 789999999999999999987766666666899999999999999999999999999999
Q ss_pred CCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCCcccC
Q 005352 558 CIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCAT 637 (701)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~ 637 (701)
+.+++. +..+ ......+..++|+|+ +..+++++.|+.+++
T Consensus 277 ~~~~~~--------~~~~----------------------------~~h~~~v~~v~~s~~----g~~l~s~~~d~~i~v 316 (321)
T 3ow8_A 277 VGTRTC--------VHTF----------------------------FDHQDQVWGVKYNGN----GSKIVSVGDDQEIHI 316 (321)
T ss_dssp TTTTEE--------EEEE----------------------------CCCSSCEEEEEECTT----SSEEEEEETTCCEEE
T ss_pred CCCCEE--------EEEE----------------------------cCCCCcEEEEEECCC----CCEEEEEeCCCeEEE
Confidence 987651 1111 011234566788886 678899999999999
Q ss_pred CCC
Q 005352 638 WPE 640 (701)
Q Consensus 638 W~~ 640 (701)
|+.
T Consensus 317 wd~ 319 (321)
T 3ow8_A 317 YDC 319 (321)
T ss_dssp EEC
T ss_pred EeC
Confidence 985
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-37 Score=324.57 Aligned_cols=281 Identities=18% Similarity=0.318 Sum_probs=243.4
Q ss_pred cccCcceeeecC------ccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcE
Q 005352 201 DKQGEGERVRLN------EEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVV 274 (701)
Q Consensus 201 ~~~~~~~~~~~~------~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I 274 (701)
.|.+.+.++.+. +..+++|+.|++|+||++...... ....+.+|...|.+++|++++.+|++|+.|++|
T Consensus 30 ~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~-----~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i 104 (321)
T 3ow8_A 30 AHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLD-----LQWSLEGHQLGVVSVDISHTLPIAASSSLDAHI 104 (321)
T ss_dssp SSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEE-----EEEEECCCSSCEEEEEECSSSSEEEEEETTSEE
T ss_pred cCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCee-----eeeeeccCCCCEEEEEECCCCCEEEEEeCCCcE
Confidence 467778777764 346889999999999998643222 123578899999999999999999999999999
Q ss_pred EEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCc
Q 005352 275 RLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHS 354 (701)
Q Consensus 275 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 354 (701)
++||+.+++.+ ..+..|.
T Consensus 105 ~lWd~~~~~~~--------------------------------------------------------------~~~~~~~ 122 (321)
T 3ow8_A 105 RLWDLENGKQI--------------------------------------------------------------KSIDAGP 122 (321)
T ss_dssp EEEETTTTEEE--------------------------------------------------------------EEEECCT
T ss_pred EEEECCCCCEE--------------------------------------------------------------EEEeCCC
Confidence 99999887532 3445677
Q ss_pred cCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEE
Q 005352 355 GEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDW 432 (701)
Q Consensus 355 ~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~ 432 (701)
..+.+++|+|++ +|++++.|+.|++|++.+++....+. +...|.+++|+| ++++|++|+.||.|++||+++++.+..
T Consensus 123 ~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~lasg~~dg~i~iwd~~~~~~~~~ 201 (321)
T 3ow8_A 123 VDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSP-DGKYLASGAIDGIINIFDIATGKLLHT 201 (321)
T ss_dssp TCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred ccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECC-CCCEEEEEcCCCeEEEEECCCCcEEEE
Confidence 788999999999 99999999999999999998887776 778899999999 999999999999999999999987754
Q ss_pred -ecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcE
Q 005352 433 -VDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQV 511 (701)
Q Consensus 433 -~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I 511 (701)
..|..+|++++|+|++++|++|+.|+.|++||+++...... ...|...|.+++|+| ++.+|++++.|+.|
T Consensus 202 ~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~--------~~~h~~~v~~~~~sp-~~~~l~s~s~D~~v 272 (321)
T 3ow8_A 202 LEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGT--------LSGHASWVLNVAFCP-DDTHFVSSSSDKSV 272 (321)
T ss_dssp ECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEE--------ECCCSSCEEEEEECT-TSSEEEEEETTSCE
T ss_pred EcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEE--------EcCCCCceEEEEECC-CCCEEEEEeCCCcE
Confidence 45788999999999999999999999999999988764321 345668899999999 78999999999999
Q ss_pred EEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 005352 512 RILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNC 558 (701)
Q Consensus 512 ~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~ 558 (701)
++||+.+.........|...|.+++|+|++++|++++.||.|+|||+
T Consensus 273 ~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 273 KVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred EEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 99999887776666678999999999999999999999999999996
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-36 Score=346.63 Aligned_cols=420 Identities=15% Similarity=0.132 Sum_probs=301.1
Q ss_pred ccCccee--eecCccccccccccceEEEEEccCccchhhhcccCceeccCCCc-EEEEEEcc--CCCEEEEEeCCCcEEE
Q 005352 202 KQGEGER--VRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGS-ILTMKFSP--DGQYLASAGDDGVVRL 276 (701)
Q Consensus 202 ~~~~~~~--~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~-I~~l~fsp--dg~~Lasgs~Dg~I~i 276 (701)
+.+.+.+ ++++++.+++++ ++.|+||+....... ....+.+.+|.+. |++++|+| ++++||+|+.||.|+|
T Consensus 17 ~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~---~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~v 92 (615)
T 1pgu_A 17 QRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSK---VPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIV 92 (615)
T ss_dssp CTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCS---SCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEE
T ss_pred ccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCc---cccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEE
Confidence 3444544 455556667666 889999998643111 0223567889999 99999999 9999999999999999
Q ss_pred EEeecC--------eeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeec-CCccEEEcCCccccccCCCe
Q 005352 277 WQVVED--------ERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRT-SESACVVFPPKVFRILEKPL 347 (701)
Q Consensus 277 Wd~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 347 (701)
||+.++ +.+..+..+.....++. +.+.+..++...... ....+..++ ..+.+
T Consensus 93 w~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-------------~s~~~~~l~~~~~~~~~~~~v~~~d------~~~~~ 153 (615)
T 1pgu_A 93 WGWTFDKESNSVEVNVKSEFQVLAGPISDIS-------------WDFEGRRLCVVGEGRDNFGVFISWD------SGNSL 153 (615)
T ss_dssp EEEEEEGGGTEEEEEEEEEEECCSSCEEEEE-------------ECTTSSEEEEEECCSSCSEEEEETT------TCCEE
T ss_pred EeCCCCcccccccccccchhhcccccEEEEE-------------EeCCCCEEEEeccCCCCccEEEEEE------CCCcc
Confidence 999754 44444444443333333 333333322221111 112333333 23567
Q ss_pred EEEcCCccCeEEEEEecCC--eEEEEECCCcEEEEECCCCeeeeeec-CCC---CeEEEEEeeCC-CCEEEEEEcCCcEE
Q 005352 348 HEFHGHSGEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFP-HSN---YVTCVHFNPVD-DNYFISGSIDGKVR 420 (701)
Q Consensus 348 ~~~~~h~~~I~~l~~s~~~--~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~---~V~~l~f~p~~-~~~l~sgs~dg~v~ 420 (701)
..+.+|...|.+++|+|++ .|++++.|+.|++||+.+++++..+. |.. .|++++|+| + +++|++++.||.|+
T Consensus 154 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~ 232 (615)
T 1pgu_A 154 GEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSP-DSGEFVITVGSDRKIS 232 (615)
T ss_dssp EECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECS-TTCCEEEEEETTCCEE
T ss_pred eeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECC-CCCCEEEEEeCCCeEE
Confidence 8889999999999999998 79999999999999999999998887 777 899999999 7 99999999999999
Q ss_pred EEeCCCCcEEEEe-----cCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEE------------------
Q 005352 421 IWAVLSCHVVDWV-----DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEIC------------------ 477 (701)
Q Consensus 421 iwd~~~~~~~~~~-----~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~------------------ 477 (701)
+||+.+++.+..+ .|...|.+++|+ ++++|++++.||.|++||+++++........
T Consensus 233 vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (615)
T 1pgu_A 233 CFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGR 311 (615)
T ss_dssp EEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTE
T ss_pred EEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCe
Confidence 9999999988766 788999999999 9999999999999999999877643322110
Q ss_pred -------------------eecccC---------------------------------CCCCCeeEEEEecC--------
Q 005352 478 -------------------VHSKKK---------------------------------APCKRITGFQFLPQ-------- 497 (701)
Q Consensus 478 -------------------~~~~~~---------------------------------~~~~~i~~l~~~p~-------- 497 (701)
...... .+...|.+++|.+.
T Consensus 312 l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~ 391 (615)
T 1pgu_A 312 IISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISW 391 (615)
T ss_dssp EEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEET
T ss_pred EEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeC
Confidence 000011 12233334443110
Q ss_pred -------------------------C--------------------------------------CCEEEEEEC-CCcEEE
Q 005352 498 -------------------------D--------------------------------------SSKVMVSCA-DSQVRI 513 (701)
Q Consensus 498 -------------------------~--------------------------------------~~~l~~~s~-dg~I~i 513 (701)
+ +.++++++. |+.|++
T Consensus 392 d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~ 471 (615)
T 1pgu_A 392 DDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQV 471 (615)
T ss_dssp TTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEE
T ss_pred CCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEE
Confidence 0 344555555 666666
Q ss_pred EeCCcccee-eecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCCCCccccccccccccccCCceEEecCCCCC
Q 005352 514 LQGPNVIGK-YKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLK 592 (701)
Q Consensus 514 wd~~~~~~~-~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 592 (701)
||+...... .....|...|++++|+|++++|++++.||.|++|++.+++.. ..+..
T Consensus 472 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~--------~~~~~--------------- 528 (615)
T 1pgu_A 472 FKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVK--------TSRWA--------------- 528 (615)
T ss_dssp EETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE--------ECCSC---------------
T ss_pred EECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcce--------eEeec---------------
Confidence 666543332 333457889999999999999999999999999999877621 11100
Q ss_pred CCCCCCCCccccCCCCCCCccccCCCc------cccCccccccCCCCcccCCCCccC-CCCccccccccchhhhhhhhhc
Q 005352 593 CGNAEKEPQLHVSDDDSPENLAFAPAR------FSLGQEYVFESFPKGCATWPEEKL-PALSQLSSASALHKSQYKFLKS 665 (701)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~l~~sp~~------~~~~~~~~~~s~d~~~~~W~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 665 (701)
.+...+..++|+|.. ...+..+++++.|+.+++|+.+.. ..+..+.+| ..
T Consensus 529 ------------~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h-----------~~ 585 (615)
T 1pgu_A 529 ------------FRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAH-----------KD 585 (615)
T ss_dssp ------------CCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSS-----------TT
T ss_pred ------------CCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcC-----------cc
Confidence 013345667777710 002678899999999999999887 556666555 46
Q ss_pred ccccccccCCCccEEEEecCCCeEeEEee
Q 005352 666 SCLCTTSSHAWGLVIVTAGWDGRIRSFLN 694 (701)
Q Consensus 666 ~~~~~~~~~~~g~~ivTgg~DG~Irvw~~ 694 (701)
.+.+++++++ +. |+||+.||.|++|+.
T Consensus 586 ~v~~l~~s~~-~~-l~s~~~d~~v~iw~~ 612 (615)
T 1pgu_A 586 GVNNLLWETP-ST-LVSSGADACIKRWNV 612 (615)
T ss_dssp CEEEEEEEET-TE-EEEEETTSCEEEEEE
T ss_pred ceEEEEEcCC-CC-eEEecCCceEEEEee
Confidence 7888999999 88 999999999999984
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-38 Score=337.45 Aligned_cols=283 Identities=22% Similarity=0.358 Sum_probs=244.2
Q ss_pred eeecccCcceeeecC--ccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEE
Q 005352 198 CVVDKQGEGERVRLN--EEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVR 275 (701)
Q Consensus 198 ~~~~~~~~~~~~~~~--~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~ 275 (701)
.+..|...+.++.++ +..+++++.|+.|+||++.... ..+.+++|.+.|++++|+|++++|++|+.|++|+
T Consensus 103 ~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~-------~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~ 175 (410)
T 1vyh_C 103 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD-------FERTLKGHTDSVQDISFDHSGKLLASCSADMTIK 175 (410)
T ss_dssp EEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCC-------CCEEECCCSSCEEEEEECTTSSEEEEEETTSCCC
T ss_pred eecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-------EEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEE
Confidence 445677777776655 4578889999999999976432 2346788999999999999999999999999999
Q ss_pred EEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCcc
Q 005352 276 LWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSG 355 (701)
Q Consensus 276 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 355 (701)
|||+.+.+ .+..+.+|..
T Consensus 176 iwd~~~~~--------------------------------------------------------------~~~~~~~h~~ 193 (410)
T 1vyh_C 176 LWDFQGFE--------------------------------------------------------------CIRTMHGHDH 193 (410)
T ss_dssp EEETTSSC--------------------------------------------------------------EEECCCCCSS
T ss_pred EEeCCCCc--------------------------------------------------------------eeEEEcCCCC
Confidence 99987653 2344568999
Q ss_pred CeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEE-EE
Q 005352 356 EILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DW 432 (701)
Q Consensus 356 ~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~-~~ 432 (701)
.|.+++|+|++ +|++++.|++|++||+.++.++..+. |...|.+++|+| ++.+|++|+.|+.|++||+.+++.. .+
T Consensus 194 ~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~-~g~~l~s~s~D~~v~vwd~~~~~~~~~~ 272 (410)
T 1vyh_C 194 NVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVATKECKAEL 272 (410)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECC-CCCEEEEEcCCCeEEEEECCCCceeeEe
Confidence 99999999999 99999999999999999999998886 889999999999 9999999999999999999998876 45
Q ss_pred ecCCCcEEEEEEeeC--------------------CCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEE
Q 005352 433 VDIRQIVTAVCYRPD--------------------GQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGF 492 (701)
Q Consensus 433 ~~~~~~i~~i~~sp~--------------------g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l 492 (701)
..|...|.+++|+|+ +.+|++|+.|+.|++||++++..... ...|...|.++
T Consensus 273 ~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~--------~~~h~~~v~~v 344 (410)
T 1vyh_C 273 REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMT--------LVGHDNWVRGV 344 (410)
T ss_dssp CCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEE--------EECCSSCEEEE
T ss_pred cCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEE--------EECCCCcEEEE
Confidence 578899999999996 67899999999999999998865432 23466789999
Q ss_pred EEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 005352 493 QFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCI 559 (701)
Q Consensus 493 ~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~ 559 (701)
+|+| ++.+|++++.|+.|++||..+.........|...|++++|+|++.+|++|+.||.|++|+++
T Consensus 345 ~~~~-~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 345 LFHS-GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp EECS-SSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred EEcC-CCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 9999 78999999999999999998766555555688999999999999999999999999999863
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-38 Score=332.21 Aligned_cols=269 Identities=16% Similarity=0.164 Sum_probs=202.0
Q ss_pred cccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeC------CCcEEEEEeecCeeeeeecCC
Q 005352 218 FCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGD------DGVVRLWQVVEDERLTEVDIP 291 (701)
Q Consensus 218 ~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~------Dg~I~iWd~~~~~~~~~~~~~ 291 (701)
.+..+.....|++.. ....+|++.|++|+|+|||++||+|+. |+.|++|+..++....
T Consensus 21 ~~~g~~~~~~w~~p~-----------~~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~----- 84 (357)
T 4g56_B 21 QSNGSSKGSAWGRPV-----------TAPACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNE----- 84 (357)
T ss_dssp ------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CG-----
T ss_pred ecCCCccccccCCCC-----------CCcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcce-----
Confidence 345566778886432 123469999999999999999999998 6677777766543211
Q ss_pred CCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCCeEEEE
Q 005352 292 EIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSA 371 (701)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~l~s~ 371 (701)
.......+|...|.+++|+|++.++++
T Consensus 85 -----------------------------------------------------~~~~~~~~~~~~V~~~~~s~d~~~l~~ 111 (357)
T 4g56_B 85 -----------------------------------------------------SLCTAGVQTEAGVTDVAWVSEKGILVA 111 (357)
T ss_dssp -----------------------------------------------------GGCSEEEECSSCEEEEEEETTTEEEEE
T ss_pred -----------------------------------------------------eEecccCCCCCCEEEEEEcCCCCEEEE
Confidence 122334568899999999999988889
Q ss_pred ECCCcEEEEECCCCeeeeee-----cCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEE-EecCCCcEEEEEEe
Q 005352 372 SIDKTVRLWRVGNDHCLRVF-----PHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD-WVDIRQIVTAVCYR 445 (701)
Q Consensus 372 s~dg~I~iWd~~~~~~~~~~-----~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~-~~~~~~~i~~i~~s 445 (701)
+.||+|+|||+.+++..... .|...|++++|+| ++++|++|+.|+.|++||+.+++.+. +..|...|++++|+
T Consensus 112 s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s 190 (357)
T 4g56_B 112 SDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFS-DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAAC 190 (357)
T ss_dssp ETTSCEEEC--------CCCCEEECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC
T ss_pred ECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEc
Confidence 99999999999988755332 4889999999999 99999999999999999999998775 45688999999999
Q ss_pred eCCC-eEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeee
Q 005352 446 PDGQ-GGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYK 524 (701)
Q Consensus 446 p~g~-~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~ 524 (701)
|++. .+++++.||.|++||+++++..... ....+...+++++|+|+++.+|++|+.|+.|++||+++......
T Consensus 191 ~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~------~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~ 264 (357)
T 4g56_B 191 PGKDTIFLSCGEDGRILLWDTRKPKPATRI------DFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQT 264 (357)
T ss_dssp TTCSSCEEEEETTSCEEECCTTSSSCBCBC------CCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEE
T ss_pred cCCCceeeeeccCCceEEEECCCCceeeee------eeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEE
Confidence 9875 7889999999999999887643221 12345567999999997788999999999999999987776666
Q ss_pred cccCCCCeEEEEEecCC-CEEEEEeCCCcEEEEeCCCCC
Q 005352 525 GLRRSGNQLSACFTSDG-KHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 525 ~~~~~~~v~~l~~s~dg-~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
...|...|++++|+|++ ++|++|+.|++|+|||+++++
T Consensus 265 ~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~ 303 (357)
T 4g56_B 265 SAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSE 303 (357)
T ss_dssp ECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCE
T ss_pred EeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCc
Confidence 66688999999999987 689999999999999987654
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-37 Score=351.93 Aligned_cols=407 Identities=14% Similarity=0.174 Sum_probs=287.0
Q ss_pred cccCcce--eeecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCC----CcE
Q 005352 201 DKQGEGE--RVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDD----GVV 274 (701)
Q Consensus 201 ~~~~~~~--~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D----g~I 274 (701)
.|...+. ++++++..+++++.|++|+||+....... ....+.+|.++|.+++|+|+|++||+++.+ +.|
T Consensus 57 ~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~-----~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v 131 (611)
T 1nr0_A 57 EHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI-----LKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHV 131 (611)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC-----EEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEE
T ss_pred CCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcce-----eeEeecccCCceEEEEECCCCCEEEEEECCCCceeEE
Confidence 4555554 45566778999999999999997532211 123577899999999999999999999875 467
Q ss_pred EEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCc
Q 005352 275 RLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHS 354 (701)
Q Consensus 275 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 354 (701)
++|| .++....+..+...+.++.|.++. ...+ .....+..+.+++... .+.+..+.+|.
T Consensus 132 ~~wd--~~~~~~~l~gh~~~v~~v~f~p~~-------------~~~l--~s~s~D~~v~lwd~~~----~~~~~~l~~H~ 190 (611)
T 1nr0_A 132 FLFD--TGTSNGNLTGQARAMNSVDFKPSR-------------PFRI--ISGSDDNTVAIFEGPP----FKFKSTFGEHT 190 (611)
T ss_dssp EETT--TCCBCBCCCCCSSCEEEEEECSSS-------------SCEE--EEEETTSCEEEEETTT----BEEEEEECCCS
T ss_pred EEee--CCCCcceecCCCCCceEEEECCCC-------------CeEE--EEEeCCCeEEEEECCC----CeEeeeecccc
Confidence 7777 444555555555444444444432 1111 1122233333333221 14467889999
Q ss_pred cCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeee--------cCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCC
Q 005352 355 GEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVF--------PHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVL 425 (701)
Q Consensus 355 ~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~--------~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~ 425 (701)
..|.+++|+|++ +|++++.|++|++||+.+++++..+ .|.+.|.+++|+| ++++|++++.|++|++||+.
T Consensus 191 ~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l~s~s~D~~v~lWd~~ 269 (611)
T 1nr0_A 191 KFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP-DGTKIASASADKTIKIWNVA 269 (611)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECT-TSSEEEEEETTSEEEEEETT
T ss_pred CceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECC-CCCEEEEEeCCCeEEEEeCC
Confidence 999999999999 9999999999999999999988877 5899999999999 99999999999999999998
Q ss_pred CCcEEE--------------------------------------------EecCCCcEEEEEEeeCCCeEEEEecCCcEE
Q 005352 426 SCHVVD--------------------------------------------WVDIRQIVTAVCYRPDGQGGIVGSMMGDCR 461 (701)
Q Consensus 426 ~~~~~~--------------------------------------------~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~ 461 (701)
+++.+. ...|...|++++|+|+|++|++++.|+.|+
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~ 349 (611)
T 1nr0_A 270 TLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHIN 349 (611)
T ss_dssp TTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEE
Confidence 876442 125778899999999999999999999999
Q ss_pred EEECCCCeeeeeee--------------------------EEeec-----------------------------------
Q 005352 462 FYNVSDNHLELDAE--------------------------ICVHS----------------------------------- 480 (701)
Q Consensus 462 i~d~~~~~~~~~~~--------------------------~~~~~----------------------------------- 480 (701)
+||+.++....... +.+..
T Consensus 350 ~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~ 429 (611)
T 1nr0_A 350 SWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAA 429 (611)
T ss_dssp EEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEE
T ss_pred EEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEE
Confidence 99998764322100 00000
Q ss_pred -------------ccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccce-eeecccCCCCeEEEEEecCCCEEEE
Q 005352 481 -------------KKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIG-KYKGLRRSGNQLSACFTSDGKHIVS 546 (701)
Q Consensus 481 -------------~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~-~~~~~~~~~~v~~l~~s~dg~~l~s 546 (701)
....+...+.+++|+| ++++|++++.|+.|++||+..... ......|...|++++|+|+|++|++
T Consensus 430 ~~~~v~~~~~~~~~~~~~~~~v~~va~sp-dg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las 508 (611)
T 1nr0_A 430 CYKHIAIYSHGKLTEVPISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVA 508 (611)
T ss_dssp ESSEEEEEETTEEEEEECSSCEEEEEECT-TSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEE
T ss_pred eCceEEEEeCCceeeeecCCCceEEEEeC-CCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEE
Confidence 0001234578899999 789999999999999999865321 1222458899999999999999999
Q ss_pred EeCCCcEEEEeCCC-CCCCCc---c-ccccccccccccCCceEE-ecCCCC-CCCCCCCCCc-c-ccC--C-CCCCCccc
Q 005352 547 AGEDSNVYMWNCIG-HEEPAH---D-QAKTIRSLERFTTNASIA-IPWCGL-KCGNAEKEPQ-L-HVS--D-DDSPENLA 614 (701)
Q Consensus 547 gs~Dg~I~iWd~~~-~~~~~~---~-~~~~~~~~~~~~~~~~~a-~~~~~~-~~~~~~~~~~-~-~~~--~-~~~~~~l~ 614 (701)
++.|+.|++|++.+ ++.... . ....+..+...+.+..++ ....+. ..|+...... . ..+ + ...+..++
T Consensus 509 ~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~ 588 (611)
T 1nr0_A 509 TDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVI 588 (611)
T ss_dssp EETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEE
T ss_pred EcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEE
Confidence 99999999999987 322111 0 222333444444432222 223332 4565543221 1 122 2 34577888
Q ss_pred cCCCccccCccccccCCCCcccCCCC
Q 005352 615 FAPARFSLGQEYVFESFPKGCATWPE 640 (701)
Q Consensus 615 ~sp~~~~~~~~~~~~s~d~~~~~W~~ 640 (701)
|+|+ +. +++++.|+.+++|+.
T Consensus 589 fs~d----~~-l~s~~~D~~i~lW~~ 609 (611)
T 1nr0_A 589 WLNE----TT-IVSAGQDSNIKFWNV 609 (611)
T ss_dssp EEET----TE-EEEEETTSCEEEEEC
T ss_pred EcCC----CE-EEEecCCCCEEEEec
Confidence 9997 45 899999999999985
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-37 Score=327.63 Aligned_cols=256 Identities=18% Similarity=0.187 Sum_probs=204.3
Q ss_pred cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeec
Q 005352 248 AHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRT 327 (701)
Q Consensus 248 ~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (701)
.|...|.+++|+|||++|++++ |+++++||............+
T Consensus 28 ~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~------------------------------------ 70 (344)
T 4gqb_B 28 CMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAP------------------------------------ 70 (344)
T ss_dssp SCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTT------------------------------------
T ss_pred cccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccC------------------------------------
Confidence 4788899999999999999888 788999985321100000000
Q ss_pred CCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCCeEEEEECCCcEEEEECCCCeeeeee-----cCCCCeEEEEE
Q 005352 328 SESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVF-----PHSNYVTCVHF 402 (701)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~-----~h~~~V~~l~f 402 (701)
..........|...|.+++|+|++.|++|+.||+|+|||+.+++++..+ .|...|++++|
T Consensus 71 ---------------~~~~~~~~~~~~~~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~ 135 (344)
T 4gqb_B 71 ---------------NEGFCSAGVQTEAGVADLTWVGERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSV 135 (344)
T ss_dssp ---------------CGGGCSEEEEESSCEEEEEEETTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEE
T ss_pred ---------------CcceeeeeeccCCCEEEEEEeCCCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEE
Confidence 0011122234677899999999999999999999999999998765543 38999999999
Q ss_pred eeCCCCEEEEEEcCCcEEEEeCCCCcEEE-EecCCCcEEEEEEeeCCC-eEEEEecCCcEEEEECCCCeeeeeeeEEeec
Q 005352 403 NPVDDNYFISGSIDGKVRIWAVLSCHVVD-WVDIRQIVTAVCYRPDGQ-GGIVGSMMGDCRFYNVSDNHLELDAEICVHS 480 (701)
Q Consensus 403 ~p~~~~~l~sgs~dg~v~iwd~~~~~~~~-~~~~~~~i~~i~~sp~g~-~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~ 480 (701)
+| ++++|++|+.|++|++||+.+++.+. +..|...|++++|+|++. .|++++.|+.|++||+++++......
T Consensus 136 sp-dg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~----- 209 (344)
T 4gqb_B 136 LS-SGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIG----- 209 (344)
T ss_dssp CT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC-----
T ss_pred CC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeee-----
Confidence 99 99999999999999999999998875 456899999999999885 67899999999999999876543221
Q ss_pred ccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCC-CEEEEEeCCCcEEEEeCC
Q 005352 481 KKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDG-KHIVSAGEDSNVYMWNCI 559 (701)
Q Consensus 481 ~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg-~~l~sgs~Dg~I~iWd~~ 559 (701)
...+...+++++|+|+++.+|++|+.|+.|++||+++.........|...|++++|+|++ ++|++|+.|++|+|||+.
T Consensus 210 -~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~ 288 (344)
T 4gqb_B 210 -CSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSS 288 (344)
T ss_dssp -----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTT
T ss_pred -cceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECC
Confidence 223446789999999888899999999999999998776666666699999999999998 689999999999999976
Q ss_pred CCC
Q 005352 560 GHE 562 (701)
Q Consensus 560 ~~~ 562 (701)
+++
T Consensus 289 ~~~ 291 (344)
T 4gqb_B 289 LSE 291 (344)
T ss_dssp CCE
T ss_pred CCc
Confidence 553
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-37 Score=319.56 Aligned_cols=249 Identities=15% Similarity=0.284 Sum_probs=218.3
Q ss_pred ceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEE
Q 005352 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (701)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (701)
+.+.+|.+.|++|+|+|++++||+|+.||+|++||+.++..
T Consensus 7 ~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~--------------------------------------- 47 (304)
T 2ynn_A 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVE--------------------------------------- 47 (304)
T ss_dssp EEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE---------------------------------------
T ss_pred EeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCce---------------------------------------
Confidence 46888999999999999999999999999999999987642
Q ss_pred eeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEE
Q 005352 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVH 401 (701)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~ 401 (701)
+..+.+|...|.+++|+|++ +|++|+.|++|++||+.+++++..+. |...|++++
T Consensus 48 -----------------------~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~ 104 (304)
T 2ynn_A 48 -----------------------VRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIA 104 (304)
T ss_dssp -----------------------EEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred -----------------------eEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEE
Confidence 34556788999999999999 99999999999999999999988886 999999999
Q ss_pred EeeCCCCEEEEEEcCCcEEEEeCCCCcEE--EEecCCCcEEEEEEee-CCCeEEEEecCCcEEEEECCCCeeeeeeeEEe
Q 005352 402 FNPVDDNYFISGSIDGKVRIWAVLSCHVV--DWVDIRQIVTAVCYRP-DGQGGIVGSMMGDCRFYNVSDNHLELDAEICV 478 (701)
Q Consensus 402 f~p~~~~~l~sgs~dg~v~iwd~~~~~~~--~~~~~~~~i~~i~~sp-~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~ 478 (701)
|+| ++++|++|+.|++|++||++++... ....|...|++++|+| ++..|++|+.|+.|++||++........
T Consensus 105 ~~~-~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~---- 179 (304)
T 2ynn_A 105 VHP-TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTL---- 179 (304)
T ss_dssp ECS-SSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEE----
T ss_pred EcC-CCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCcccee----
Confidence 999 9999999999999999999887433 4557889999999999 6789999999999999999876543211
Q ss_pred ecccCCCCCCeeEEEEecC-CCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEe
Q 005352 479 HSKKKAPCKRITGFQFLPQ-DSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWN 557 (701)
Q Consensus 479 ~~~~~~~~~~i~~l~~~p~-~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd 557 (701)
...+...+..+.|+|. ++.+|++++.|+.|++||+.+.........|...|.+++|+|++++|++|+.||.|++||
T Consensus 180 ---~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd 256 (304)
T 2ynn_A 180 ---TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256 (304)
T ss_dssp ---ECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEE
T ss_pred ---ccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEE
Confidence 2234467888999873 567999999999999999998776666667999999999999999999999999999999
Q ss_pred CCCCC
Q 005352 558 CIGHE 562 (701)
Q Consensus 558 ~~~~~ 562 (701)
+.+++
T Consensus 257 ~~~~~ 261 (304)
T 2ynn_A 257 SSTYK 261 (304)
T ss_dssp TTTCC
T ss_pred CCCCc
Confidence 98776
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-36 Score=319.02 Aligned_cols=283 Identities=16% Similarity=0.316 Sum_probs=234.8
Q ss_pred ceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEE
Q 005352 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (701)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (701)
+.+++|.+.|++++|+|++++|++|+.||+|+|||+.+++
T Consensus 49 ~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~---------------------------------------- 88 (340)
T 1got_B 49 RTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTN---------------------------------------- 88 (340)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCC----------------------------------------
T ss_pred eeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCC----------------------------------------
Confidence 4688999999999999999999999999999999987764
Q ss_pred eeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCe----eeeee-cCCCCe
Q 005352 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDH----CLRVF-PHSNYV 397 (701)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~----~~~~~-~h~~~V 397 (701)
.+..+..|...|.+++|+|++ +|++++.|+.|++|++.+.. ....+ .|...|
T Consensus 89 ----------------------~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v 146 (340)
T 1got_B 89 ----------------------KVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYL 146 (340)
T ss_dssp ----------------------EEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCE
T ss_pred ----------------------cceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccE
Confidence 234556788999999999999 99999999999999998763 33333 389999
Q ss_pred EEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEE-EecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeE
Q 005352 398 TCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD-WVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEI 476 (701)
Q Consensus 398 ~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~-~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~ 476 (701)
.++.|++ ++ .+++++.|+.|++||+.+++.+. +..|...|++++|+|+++++++|+.||.|++||++++.....
T Consensus 147 ~~~~~~~-~~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~--- 221 (340)
T 1got_B 147 SCCRFLD-DN-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQT--- 221 (340)
T ss_dssp EEEEEEE-TT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEE---
T ss_pred EEEEECC-CC-cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEE---
Confidence 9999998 54 58999999999999999998774 446889999999999999999999999999999998764322
Q ss_pred EeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeec--ccCCCCeEEEEEecCCCEEEEEeCCCcEE
Q 005352 477 CVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKG--LRRSGNQLSACFTSDGKHIVSAGEDSNVY 554 (701)
Q Consensus 477 ~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~--~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~ 554 (701)
...|...|++++|+| ++.+|++++.|+.|++||++........ ..+...|.+++|+|+|++|++|+.||.|+
T Consensus 222 -----~~~h~~~v~~v~~~p-~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~ 295 (340)
T 1got_B 222 -----FTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCN 295 (340)
T ss_dssp -----ECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred -----EcCCcCCEEEEEEcC-CCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEE
Confidence 234667899999999 7899999999999999999865443322 22445799999999999999999999999
Q ss_pred EEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCCc
Q 005352 555 MWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKG 634 (701)
Q Consensus 555 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~ 634 (701)
+||+.+++.. ..+ ..+...+..++|+|+ +..+++++.|+.
T Consensus 296 vwd~~~~~~~--------~~~----------------------------~~h~~~v~~~~~s~d----g~~l~s~s~D~~ 335 (340)
T 1got_B 296 VWDALKADRA--------GVL----------------------------AGHDNRVSCLGVTDD----GMAVATGSWDSF 335 (340)
T ss_dssp EEETTTCCEE--------EEE----------------------------ECCSSCEEEEEECTT----SSCEEEEETTSC
T ss_pred EEEcccCcEe--------eEe----------------------------ecCCCcEEEEEEcCC----CCEEEEEcCCcc
Confidence 9998776511 000 011334667788887 678899999999
Q ss_pred ccCCC
Q 005352 635 CATWP 639 (701)
Q Consensus 635 ~~~W~ 639 (701)
+++|+
T Consensus 336 i~iWd 340 (340)
T 1got_B 336 LKIWN 340 (340)
T ss_dssp EEEEC
T ss_pred EEecC
Confidence 99996
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-36 Score=313.59 Aligned_cols=249 Identities=21% Similarity=0.336 Sum_probs=214.8
Q ss_pred ceeccCCCcEEEEEEccCC-CEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeE
Q 005352 244 QEIQAHDGSILTMKFSPDG-QYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (701)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg-~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (701)
..+.+|.+.|++++|+|++ ++|+||+.|++|++|++......
T Consensus 11 ~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~------------------------------------- 53 (319)
T 3frx_A 11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQK------------------------------------- 53 (319)
T ss_dssp EEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTE-------------------------------------
T ss_pred EEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcc-------------------------------------
Confidence 4688999999999999965 89999999999999998653210
Q ss_pred EeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEE
Q 005352 323 SLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCV 400 (701)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l 400 (701)
...++..+.+|...|.+++|+|++ +|++++.|++|++||+.+++++..+. |...|.++
T Consensus 54 --------------------~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~ 113 (319)
T 3frx_A 54 --------------------FGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSV 113 (319)
T ss_dssp --------------------EEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEE
T ss_pred --------------------ccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEE
Confidence 003456788999999999999999 99999999999999999999988876 99999999
Q ss_pred EEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeC------CCeEEEEecCCcEEEEECCCCeeeeee
Q 005352 401 HFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPD------GQGGIVGSMMGDCRFYNVSDNHLELDA 474 (701)
Q Consensus 401 ~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~------g~~l~~gs~dg~v~i~d~~~~~~~~~~ 474 (701)
+|+| ++.+|++|+.|++|++||++.........|...|.++++.|. +..+++++.|+.|++||+++.+....
T Consensus 114 ~~~~-~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~- 191 (319)
T 3frx_A 114 DIDK-KASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD- 191 (319)
T ss_dssp EECT-TSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEE-
T ss_pred EEcC-CCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhhee-
Confidence 9999 999999999999999999987777778889999999999985 44899999999999999988764321
Q ss_pred eEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEE
Q 005352 475 EICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVY 554 (701)
Q Consensus 475 ~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~ 554 (701)
...|...|.+++|+| ++.+|++++.|+.|++||+.......... +...|.+++|+|++.+|++++.+ .++
T Consensus 192 -------~~~h~~~v~~~~~sp-~g~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~la~~~~~-~i~ 261 (319)
T 3frx_A 192 -------FIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNLAAKKAMYTLS-AQDEVFSLAFSPNRYWLAAATAT-GIK 261 (319)
T ss_dssp -------ECCCCSCEEEEEECT-TSSEEEEEETTCEEEEEETTTTEEEEEEE-CCSCEEEEEECSSSSEEEEEETT-EEE
T ss_pred -------ecCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEEEec-CCCcEEEEEEcCCCCEEEEEcCC-CcE
Confidence 235678899999999 78999999999999999998766554443 45789999999999999998865 599
Q ss_pred EEeCCCC
Q 005352 555 MWNCIGH 561 (701)
Q Consensus 555 iWd~~~~ 561 (701)
+|+++..
T Consensus 262 v~~~~~~ 268 (319)
T 3frx_A 262 VFSLDPQ 268 (319)
T ss_dssp EEEETTE
T ss_pred EEEeCcC
Confidence 9998654
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-36 Score=315.65 Aligned_cols=252 Identities=20% Similarity=0.317 Sum_probs=207.5
Q ss_pred ceeccCCCcEEEEEE-----cc-CCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeecccc
Q 005352 244 QEIQAHDGSILTMKF-----SP-DGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEK 317 (701)
Q Consensus 244 ~~l~~H~~~I~~l~f-----sp-dg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (701)
+.+++|.+.|++++| ++ ++++||||+.|++|+|||+.+.+....
T Consensus 15 ~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~------------------------------ 64 (343)
T 2xzm_R 15 GILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGY------------------------------ 64 (343)
T ss_dssp EEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSB------------------------------
T ss_pred eeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccc------------------------------
Confidence 468899999999999 77 899999999999999999876431100
Q ss_pred ceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCC
Q 005352 318 ISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSN 395 (701)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~ 395 (701)
...+...+.+|...|.+++|+|++ +|++++.|++|++||+.+++++..+. |..
T Consensus 65 -------------------------~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~ 119 (343)
T 2xzm_R 65 -------------------------FGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQS 119 (343)
T ss_dssp -------------------------SEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCS
T ss_pred -------------------------cccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCC
Confidence 003456678999999999999999 99999999999999999999988876 999
Q ss_pred CeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEe---cCCCcEEEEEEeeCC----------CeEEEEecCCcEEE
Q 005352 396 YVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV---DIRQIVTAVCYRPDG----------QGGIVGSMMGDCRF 462 (701)
Q Consensus 396 ~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~---~~~~~i~~i~~sp~g----------~~l~~gs~dg~v~i 462 (701)
.|.+++|+| ++++|++++.|+.|++||+......... .|...|.+++|+|++ .+|++++.||.|++
T Consensus 120 ~v~~v~~sp-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i 198 (343)
T 2xzm_R 120 EVYSVAFSP-DNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKV 198 (343)
T ss_dssp CEEEEEECS-STTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEE
T ss_pred cEEEEEECC-CCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEE
Confidence 999999999 9999999999999999999855444333 577889999999987 78999999999999
Q ss_pred EECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCC
Q 005352 463 YNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGK 542 (701)
Q Consensus 463 ~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~ 542 (701)
||... .... ....|...|.+++|+| ++.+|++++.|+.|++||+...........+...|.+++|+|++.
T Consensus 199 wd~~~-~~~~--------~~~~h~~~v~~~~~s~-~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~ 268 (343)
T 2xzm_R 199 WNTNF-QIRY--------TFKAHESNVNHLSISP-NGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQ 268 (343)
T ss_dssp EETTT-EEEE--------EEECCSSCEEEEEECT-TSSEEEEEETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSC
T ss_pred EcCCC-ceeE--------EEcCccccceEEEECC-CCCEEEEEcCCCeEEEEECCCCcccceeecCCCcEEEEEECCCCC
Confidence 99543 2211 1234667899999999 789999999999999999854333222233556799999999999
Q ss_pred EEEEEeCCCcEEEEeCCCCC
Q 005352 543 HIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 543 ~l~sgs~Dg~I~iWd~~~~~ 562 (701)
+|+++ .|+.|++|++.+++
T Consensus 269 ~la~~-~d~~v~iw~~~~~~ 287 (343)
T 2xzm_R 269 WVAVG-TDQGVKIFNLMTQS 287 (343)
T ss_dssp EEEEE-ESSCEEEEESSSCC
T ss_pred EEEEE-CCCCEEEEEeCCCC
Confidence 87755 57889999987765
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-36 Score=318.63 Aligned_cols=293 Identities=15% Similarity=0.214 Sum_probs=224.1
Q ss_pred cCcceeeecCcc-ccccccccceEEEEEccCcc----chhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEE
Q 005352 203 QGEGERVRLNEE-DAMFCSKVQRVKVYHCKKRS----KELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLW 277 (701)
Q Consensus 203 ~~~~~~~~~~~~-~~~~~~~d~~v~vw~~~~~~----~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iW 277 (701)
+..+.+++++++ .+++++.++++++|+..... ..............|...|.+++|+|++ +|++|+.||+|+||
T Consensus 30 ~~~v~~~~fs~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lW 108 (344)
T 4gqb_B 30 ERQLEAARYRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAVELW 108 (344)
T ss_dssp CSEEEEEEECTTSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEEEEE
T ss_pred cCCEEEEEECCCCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEEEEE
Confidence 344555555443 33444557777777632110 0001111112234577889999999985 78899999999999
Q ss_pred EeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCe
Q 005352 278 QVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEI 357 (701)
Q Consensus 278 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I 357 (701)
|+.+++.+.. ....+.+|.+.|
T Consensus 109 d~~~~~~~~~----------------------------------------------------------~~~~~~~H~~~V 130 (344)
T 4gqb_B 109 ELDENETLIV----------------------------------------------------------SKFCKYEHDDIV 130 (344)
T ss_dssp EECTTSSCEE----------------------------------------------------------EEEEEECCSSCE
T ss_pred eccCCCceeE----------------------------------------------------------eeccccCCCCCE
Confidence 9988753221 123456899999
Q ss_pred EEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEe--
Q 005352 358 LDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV-- 433 (701)
Q Consensus 358 ~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~-- 433 (701)
++++|+|++ +|++|+.|++|++||+.+++++..+. |...|++++|+|....+|++++.|++|++||+++++....+
T Consensus 131 ~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~ 210 (344)
T 4gqb_B 131 STVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGC 210 (344)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC-
T ss_pred EEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeec
Confidence 999999999 99999999999999999999999887 99999999999944468999999999999999998876543
Q ss_pred -cCCCcEEEEEEeeC-CCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcE
Q 005352 434 -DIRQIVTAVCYRPD-GQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQV 511 (701)
Q Consensus 434 -~~~~~i~~i~~sp~-g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I 511 (701)
.+...+++++|+|+ +++|++|+.||.|++||+++++.... ...|...|++++|+|++..+|++++.|++|
T Consensus 211 ~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~--------~~~h~~~v~~v~fsp~g~~~lasgs~D~~i 282 (344)
T 4gqb_B 211 SAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLS--------SAVHSQCVTGLVFSPHSVPFLASLSEDCSL 282 (344)
T ss_dssp ---CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEE--------EECCSSCEEEEEECSSSSCCEEEEETTSCE
T ss_pred ceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEE--------EcCCCCCEEEEEEccCCCeEEEEEeCCCeE
Confidence 34567999999995 56788999999999999998765432 234668899999999656789999999999
Q ss_pred EEEeCCccceeeecccCCCCeEEEEEecCCC-EEEEEeCCCcEEEEeCCCCCC
Q 005352 512 RILQGPNVIGKYKGLRRSGNQLSACFTSDGK-HIVSAGEDSNVYMWNCIGHEE 563 (701)
Q Consensus 512 ~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~-~l~sgs~Dg~I~iWd~~~~~~ 563 (701)
+|||..... .+....|...|++++|+|+++ +|++++.|++|++|++.+...
T Consensus 283 ~vwd~~~~~-~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 283 AVLDSSLSE-LFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp EEECTTCCE-EEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred EEEECCCCc-EEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence 999997654 344556999999999999986 577999999999999987653
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-36 Score=313.86 Aligned_cols=288 Identities=17% Similarity=0.308 Sum_probs=234.1
Q ss_pred eecccCcceeeecCc---cccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEE
Q 005352 199 VVDKQGEGERVRLNE---EDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVR 275 (701)
Q Consensus 199 ~~~~~~~~~~~~~~~---~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~ 275 (701)
+..|.+.+.++.+.+ ..+++++.|++|++|++....... ......+++|...|.+++|+|+|++|++|+.|++|+
T Consensus 13 l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~--~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~ 90 (319)
T 3frx_A 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKF--GVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLR 90 (319)
T ss_dssp ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEE--EEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred EccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccc--cccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEE
Confidence 346778888877653 467889999999999985432211 122346889999999999999999999999999999
Q ss_pred EEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCcc
Q 005352 276 LWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSG 355 (701)
Q Consensus 276 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 355 (701)
|||+.+++. +..+.+|..
T Consensus 91 ~wd~~~~~~--------------------------------------------------------------~~~~~~h~~ 108 (319)
T 3frx_A 91 LWDVATGET--------------------------------------------------------------YQRFVGHKS 108 (319)
T ss_dssp EEETTTTEE--------------------------------------------------------------EEEEECCSS
T ss_pred EEECCCCCe--------------------------------------------------------------eEEEccCCC
Confidence 999987742 345678999
Q ss_pred CeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeC-----CCCEEEEEEcCCcEEEEeCCCCcE
Q 005352 356 EILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPV-----DDNYFISGSIDGKVRIWAVLSCHV 429 (701)
Q Consensus 356 ~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~-----~~~~l~sgs~dg~v~iwd~~~~~~ 429 (701)
.|.+++|+|++ +|++++.|++|++||++.........|...|.+++|.|. ++.+|++++.|+.|++||+++.+.
T Consensus 109 ~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~ 188 (319)
T 3frx_A 109 DVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI 188 (319)
T ss_dssp CEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEE
T ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchh
Confidence 99999999998 999999999999999976554444559999999999982 234899999999999999998876
Q ss_pred E-EEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECC
Q 005352 430 V-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD 508 (701)
Q Consensus 430 ~-~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~d 508 (701)
. .+..|...|++++|+|++++|++|+.||.|++||+.+.+...... ....|.+++|+| ++.++++++.
T Consensus 189 ~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~---------~~~~v~~~~~sp-~~~~la~~~~- 257 (319)
T 3frx_A 189 EADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS---------AQDEVFSLAFSP-NRYWLAAATA- 257 (319)
T ss_dssp EEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEE---------CCSCEEEEEECS-SSSEEEEEET-
T ss_pred heeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEec---------CCCcEEEEEEcC-CCCEEEEEcC-
Confidence 6 456789999999999999999999999999999999887643221 235799999999 6777777765
Q ss_pred CcEEEEeCCccceeeec--------ccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 005352 509 SQVRILQGPNVIGKYKG--------LRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGH 561 (701)
Q Consensus 509 g~I~iwd~~~~~~~~~~--------~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~ 561 (701)
+.+++|++......... ..+...+.+++|+|+|++|++|+.||.|+||++.+.
T Consensus 258 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 258 TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp TEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred CCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 45999998753322211 124667999999999999999999999999998764
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-36 Score=318.40 Aligned_cols=290 Identities=16% Similarity=0.255 Sum_probs=229.5
Q ss_pred eecccCcceeeec--------CccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeC
Q 005352 199 VVDKQGEGERVRL--------NEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGD 270 (701)
Q Consensus 199 ~~~~~~~~~~~~~--------~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~ 270 (701)
+..|.+.+.++.+ ++..+++|+.|++|+||++...............+.+|...|.+++|+|++.+|++|+.
T Consensus 17 l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~ 96 (343)
T 2xzm_R 17 LEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSW 96 (343)
T ss_dssp EECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEET
T ss_pred eccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcC
Confidence 3457777777754 45678899999999999986543211111223467899999999999999999999999
Q ss_pred CCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEE
Q 005352 271 DGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEF 350 (701)
Q Consensus 271 Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (701)
|++|++||+.+++ .+..+
T Consensus 97 D~~v~lwd~~~~~--------------------------------------------------------------~~~~~ 114 (343)
T 2xzm_R 97 DKTLRLWDLRTGT--------------------------------------------------------------TYKRF 114 (343)
T ss_dssp TSEEEEEETTSSC--------------------------------------------------------------EEEEE
T ss_pred CCcEEEEECCCCc--------------------------------------------------------------EEEEE
Confidence 9999999998764 34556
Q ss_pred cCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeee---cCCCCeEEEEEeeCCC----------CEEEEEEcC
Q 005352 351 HGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVF---PHSNYVTCVHFNPVDD----------NYFISGSID 416 (701)
Q Consensus 351 ~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~---~h~~~V~~l~f~p~~~----------~~l~sgs~d 416 (701)
.+|...|.+++|+|++ +|++++.|++|++||+......... .|...|.+++|+| ++ .+|++++.|
T Consensus 115 ~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~l~s~~~d 193 (343)
T 2xzm_R 115 VGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSP-IMKSANKVQPFAPYFASVGWD 193 (343)
T ss_dssp ECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECC-CCCSCSCCCSSCCEEEEEETT
T ss_pred cCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeecc-ccccccccCCCCCEEEEEcCC
Confidence 7899999999999999 9999999999999999854443333 4888999999999 65 799999999
Q ss_pred CcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEec
Q 005352 417 GKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLP 496 (701)
Q Consensus 417 g~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p 496 (701)
+.|++||...........|...|++++|+|+|++|++|+.||.|++||+........ .. .+...|.+++|+|
T Consensus 194 ~~i~iwd~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~---~~-----~~~~~v~~v~~sp 265 (343)
T 2xzm_R 194 GRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQR---EF-----DAGSTINQIAFNP 265 (343)
T ss_dssp SEEEEEETTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSE---EE-----ECSSCEEEEEECS
T ss_pred CEEEEEcCCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccce---ee-----cCCCcEEEEEECC
Confidence 999999965544446678899999999999999999999999999999954322111 00 1234699999999
Q ss_pred CCCCEEEEEECCCcEEEEeCCccce----eeec---------ccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 005352 497 QDSSKVMVSCADSQVRILQGPNVIG----KYKG---------LRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGH 561 (701)
Q Consensus 497 ~~~~~l~~~s~dg~I~iwd~~~~~~----~~~~---------~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~ 561 (701)
++.+++ ++.|+.|++||+.+... .+.. ..|...|.+++|+|+|++|++|+.||.|++|++.++
T Consensus 266 -~~~~la-~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 266 -KLQWVA-VGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp -SSCEEE-EEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred -CCCEEE-EECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 566655 55688899999864332 1111 146778999999999999999999999999998765
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-35 Score=313.14 Aligned_cols=291 Identities=20% Similarity=0.314 Sum_probs=235.2
Q ss_pred ceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEE
Q 005352 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (701)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (701)
+.+++|.+.|++|+|+|++++||||+.||+|+|||..+++....+..+.....++.+.+++. .++
T Consensus 58 ~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~-------------~la-- 122 (354)
T 2pbi_B 58 RTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGC-------------AIA-- 122 (354)
T ss_dssp EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSS-------------EEE--
T ss_pred EEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCC-------------EEE--
Confidence 46889999999999999999999999999999999998887777766655555555544332 111
Q ss_pred eeecCCccEEEcCCccc--cccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEE
Q 005352 324 LRRTSESACVVFPPKVF--RILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTC 399 (701)
Q Consensus 324 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~ 399 (701)
....+..+.+++...- .........+.+|...|.+++|+|++ .|++++.|++|++||+.+++++..+. |...|.+
T Consensus 123 -sg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~ 201 (354)
T 2pbi_B 123 -CGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLC 201 (354)
T ss_dssp -EESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred -EeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEE
Confidence 1112222222221110 01113456778899999999999999 99999999999999999999998886 8999999
Q ss_pred EEEeeC-CCCEEEEEEcCCcEEEEeCCCCcEEEE-ecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEE
Q 005352 400 VHFNPV-DDNYFISGSIDGKVRIWAVLSCHVVDW-VDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEIC 477 (701)
Q Consensus 400 l~f~p~-~~~~l~sgs~dg~v~iwd~~~~~~~~~-~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~ 477 (701)
++|+|. ++++|++|+.||.|++||+++++.+.. ..|...|++++|+|+++.|++|+.|+.|++||++.......
T Consensus 202 ~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~---- 277 (354)
T 2pbi_B 202 LDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAI---- 277 (354)
T ss_dssp EEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE----
T ss_pred EEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEE----
Confidence 999883 358999999999999999999987754 46889999999999999999999999999999998754321
Q ss_pred eecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEe
Q 005352 478 VHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWN 557 (701)
Q Consensus 478 ~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd 557 (701)
.. ...+...+++++|+| ++.+|++++.|+.|++||+.+.........|...|++++|+|+|++|++|+.||.|+||+
T Consensus 278 -~~-~~~~~~~~~~~~~s~-~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 278 -YS-KESIIFGASSVDFSL-SGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp -EC-CTTCCSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred -Ec-CCCcccceeEEEEeC-CCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 11 223345789999999 789999999999999999987666666666999999999999999999999999999996
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-36 Score=314.64 Aligned_cols=308 Identities=21% Similarity=0.290 Sum_probs=236.8
Q ss_pred ceeccCCC-cEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeE
Q 005352 244 QEIQAHDG-SILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (701)
Q Consensus 244 ~~l~~H~~-~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (701)
+.+++|.+ .|++++|+|+|++||+|+.|++|+|||+.++.....
T Consensus 9 ~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~----------------------------------- 53 (345)
T 3fm0_A 9 GRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICK----------------------------------- 53 (345)
T ss_dssp EEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEE-----------------------------------
T ss_pred eeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceee-----------------------------------
Confidence 46788988 999999999999999999999999999987642110
Q ss_pred EeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCe--eeeeec-CCCCeE
Q 005352 323 SLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDH--CLRVFP-HSNYVT 398 (701)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~--~~~~~~-h~~~V~ 398 (701)
.....+|...|.+++|+|++ +|++++.|++|++||+..+. ++..+. |...|.
T Consensus 54 ------------------------~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~ 109 (345)
T 3fm0_A 54 ------------------------SVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVK 109 (345)
T ss_dssp ------------------------EEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEE
T ss_pred ------------------------eeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCce
Confidence 11225799999999999999 99999999999999998764 455555 999999
Q ss_pred EEEEeeCCCCEEEEEEcCCcEEEEeCCCCcE---E-EEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeee
Q 005352 399 CVHFNPVDDNYFISGSIDGKVRIWAVLSCHV---V-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDA 474 (701)
Q Consensus 399 ~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~---~-~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~ 474 (701)
+++|+| ++++|++|+.|+.|++||+.++.. + ....|...|.+++|+|++++|++|+.|+.|++||+.........
T Consensus 110 ~v~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~ 188 (345)
T 3fm0_A 110 SVAWAP-SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCA 188 (345)
T ss_dssp EEEECT-TSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEE
T ss_pred EEEEeC-CCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEE
Confidence 999999 999999999999999999987642 2 34568889999999999999999999999999999876543221
Q ss_pred eEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccc---------------eeeecc-cCCCCeEEEEEe
Q 005352 475 EICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVI---------------GKYKGL-RRSGNQLSACFT 538 (701)
Q Consensus 475 ~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~---------------~~~~~~-~~~~~v~~l~~s 538 (701)
....|...|.+++|+| ++.+|++++.|+.|+||+..... ...... .|...|.+++|+
T Consensus 189 ------~~~~h~~~v~~l~~sp-~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~ 261 (345)
T 3fm0_A 189 ------TLEGHESTVWSLAFDP-SGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWC 261 (345)
T ss_dssp ------EECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEEC
T ss_pred ------EecCCCCceEEEEECC-CCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEe
Confidence 1345678899999999 78999999999999999853110 111111 277899999999
Q ss_pred cCCCEEEEEeCCCcEEEEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCC
Q 005352 539 SDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPA 618 (701)
Q Consensus 539 ~dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~ 618 (701)
|++.+|++++.|+.|++|+......+.... ..+ . ...+..+...+..++|+|+
T Consensus 262 ~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~----~~~---------~--------------~~~~~~h~~~V~~v~~~p~ 314 (345)
T 3fm0_A 262 QLTGALATACGDDAIRVFQEDPNSDPQQPT----FSL---------T--------------AHLHQAHSQDVNCVAWNPK 314 (345)
T ss_dssp TTTCCEEEEETTSCEEEEEECTTSCTTSCC----EEE---------E--------------EEETTSSSSCEEEEEECSS
T ss_pred cCCCEEEEEeCCCeEEEEEeCCCCCcceee----EEE---------E--------------eeecccccCcEeEeEEeCC
Confidence 999999999999999999987654221000 000 0 0001112345777888886
Q ss_pred ccccCccccccCCCCcccCCCCccCCCCcc
Q 005352 619 RFSLGQEYVFESFPKGCATWPEEKLPALSQ 648 (701)
Q Consensus 619 ~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~ 648 (701)
. ...+++++.|+.+++|+........+
T Consensus 315 ~---~~~laS~s~Dg~v~~W~~~~~~~~~~ 341 (345)
T 3fm0_A 315 E---PGLLASCSDDGEVAFWKYQRPEGLHH 341 (345)
T ss_dssp S---TTEEEEEETTSCEEEEEECC------
T ss_pred C---ceEEEEcCCCCcEEEEEecCCCCccc
Confidence 2 34788999999999999887765444
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-36 Score=315.52 Aligned_cols=297 Identities=19% Similarity=0.299 Sum_probs=232.3
Q ss_pred cccC-cce--eeecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEE
Q 005352 201 DKQG-EGE--RVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLW 277 (701)
Q Consensus 201 ~~~~-~~~--~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iW 277 (701)
.|.. .+. ++++++..+++++.|+.|+||+......... .....+|.+.|.+++|+|+|++||+|+.|++|+||
T Consensus 13 ~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~----~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw 88 (345)
T 3fm0_A 13 AHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICK----SVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIW 88 (345)
T ss_dssp CSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEE----EEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred CCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceee----eeeccccCCcEEEEEECCCCCEEEEEECCCcEEEE
Confidence 4444 444 4566677889999999999999764321111 11236799999999999999999999999999999
Q ss_pred EeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCe
Q 005352 278 QVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEI 357 (701)
Q Consensus 278 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I 357 (701)
++..+.. +.+..+.+|...|
T Consensus 89 ~~~~~~~------------------------------------------------------------~~~~~~~~h~~~v 108 (345)
T 3fm0_A 89 KKNQDDF------------------------------------------------------------ECVTTLEGHENEV 108 (345)
T ss_dssp EECCC-E------------------------------------------------------------EEEEEECCCSSCE
T ss_pred EccCCCe------------------------------------------------------------EEEEEccCCCCCc
Confidence 9876431 2345678899999
Q ss_pred EEEEEecCC-eEEEEECCCcEEEEECCCCe---eeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEE--
Q 005352 358 LDLSWSKNN-YLLSASIDKTVRLWRVGNDH---CLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-- 430 (701)
Q Consensus 358 ~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~---~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~-- 430 (701)
.+++|+|++ +|++++.|++|++||+.++. ++..+. |...|.+++|+| ++.+|++++.|+.|++||+.++...
T Consensus 109 ~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~d~~i~~w~~~~~~~~~~ 187 (345)
T 3fm0_A 109 KSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP-SQELLASASYDDTVKLYREEEDDWVCC 187 (345)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECS-SSSCEEEEETTSCEEEEEEETTEEEEE
T ss_pred eEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECC-CCCEEEEEeCCCcEEEEEecCCCEEEE
Confidence 999999999 99999999999999998764 344444 889999999999 9999999999999999999887533
Q ss_pred -EEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeee--------eeEEeecccCCCCCCeeEEEEecCCCCE
Q 005352 431 -DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELD--------AEICVHSKKKAPCKRITGFQFLPQDSSK 501 (701)
Q Consensus 431 -~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~--------~~~~~~~~~~~~~~~i~~l~~~p~~~~~ 501 (701)
....|...|++++|+|++++|++|+.|+.|++|+......... ...........|...|.+++|+| ++..
T Consensus 188 ~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~ 266 (345)
T 3fm0_A 188 ATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQ-LTGA 266 (345)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECT-TTCC
T ss_pred EEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEec-CCCE
Confidence 4567889999999999999999999999999999643211000 00111122234678899999999 6889
Q ss_pred EEEEECCCcEEEEeCCccc----ee--e---ecccCCCCeEEEEEecCC-CEEEEEeCCCcEEEEeCCCCCC
Q 005352 502 VMVSCADSQVRILQGPNVI----GK--Y---KGLRRSGNQLSACFTSDG-KHIVSAGEDSNVYMWNCIGHEE 563 (701)
Q Consensus 502 l~~~s~dg~I~iwd~~~~~----~~--~---~~~~~~~~v~~l~~s~dg-~~l~sgs~Dg~I~iWd~~~~~~ 563 (701)
|++++.|+.|++|+..... .. + ....|...|++++|+|++ .+|++|+.||.|++|++.+++.
T Consensus 267 l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~ 338 (345)
T 3fm0_A 267 LATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEG 338 (345)
T ss_dssp EEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC---
T ss_pred EEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCC
Confidence 9999999999999975321 11 1 123588999999999998 5999999999999999988764
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-36 Score=313.04 Aligned_cols=300 Identities=19% Similarity=0.244 Sum_probs=224.6
Q ss_pred eeecccCcceeeecCccccccccccceEEEEEccCccchhhhcccCcee-c-cCCCcEEEEEEccCCCEEEEEeCCCcEE
Q 005352 198 CVVDKQGEGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEI-Q-AHDGSILTMKFSPDGQYLASAGDDGVVR 275 (701)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l-~-~H~~~I~~l~fspdg~~Lasgs~Dg~I~ 275 (701)
.+..|.+.+.++.++++.+++++.|+.|+||++........ ..+ . +|.+.|++++|+|++++||+|+.|++|+
T Consensus 9 ~~~~h~~~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~~-----~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~ 83 (330)
T 2hes_X 9 SLKLYKEKIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLI-----DVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVS 83 (330)
T ss_dssp EEECCSSCEEEEEEETTEEEEEESSSCEEEEECSSSCCEEE-----EEECTTCCCSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred eeccCCCceeeeccCCCEEEEEcCCCEEEEEEecCCCeEEE-----EEEecCCccCCEEEEEECCCCCEEEEEeCCCcEE
Confidence 34467788888988888888999999999999865321111 223 3 3999999999999999999999999999
Q ss_pred EEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCcc
Q 005352 276 LWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSG 355 (701)
Q Consensus 276 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 355 (701)
||++....... . ..+.+..+.+|..
T Consensus 84 iw~~~~~~~~~-~------------------------------------------------------~~~~~~~~~~h~~ 108 (330)
T 2hes_X 84 IWAKEESADRT-F------------------------------------------------------EMDLLAIIEGHEN 108 (330)
T ss_dssp EEEC--------C------------------------------------------------------CCEEEEEEC----
T ss_pred EEEcccCcCcc-c------------------------------------------------------cceeEEEEcCCCC
Confidence 99986432000 0 0023566789999
Q ss_pred CeEEEEEecCC-eEEEEECCCcEEEEECCC----Ceeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCC--
Q 005352 356 EILDLSWSKNN-YLLSASIDKTVRLWRVGN----DHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSC-- 427 (701)
Q Consensus 356 ~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~----~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~-- 427 (701)
.|.+++|+|++ +|++++.|++|++||+.. .+++..+. |...|++++|+| ++.+|++++.|++|++||+.++
T Consensus 109 ~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~i~iW~~~~~~~ 187 (330)
T 2hes_X 109 EVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP-SEALLASSSYDDTVRIWKDYDDDW 187 (330)
T ss_dssp CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEEEETTEE
T ss_pred cEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECC-CCCEEEEEcCCCeEEEEECCCCCe
Confidence 99999999999 999999999999999943 24556665 899999999999 9999999999999999999776
Q ss_pred cEE-EEecCCCcEEEEEEeeC--CCeEEEEecCCcEEEEECCCCeeeeeee-EEeecccCCCCCCeeEEEEecCCCCEEE
Q 005352 428 HVV-DWVDIRQIVTAVCYRPD--GQGGIVGSMMGDCRFYNVSDNHLELDAE-ICVHSKKKAPCKRITGFQFLPQDSSKVM 503 (701)
Q Consensus 428 ~~~-~~~~~~~~i~~i~~sp~--g~~l~~gs~dg~v~i~d~~~~~~~~~~~-~~~~~~~~~~~~~i~~l~~~p~~~~~l~ 503 (701)
+.+ .+..|...|.+++|+|+ +..|++|+.|++|++||+.......... .........|...|.+++|++ +.+|+
T Consensus 188 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~--~~~l~ 265 (330)
T 2hes_X 188 ECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGF--NGLIA 265 (330)
T ss_dssp EEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECT--TSCEE
T ss_pred eEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcC--CCEEE
Confidence 333 45578899999999998 6789999999999999986532100000 111112233678899999997 35899
Q ss_pred EEECCCcEEEEeCCccc--eee-ecccCCC-CeEEEEEec--CCCEEEEEeCCCcEEEEeCCC
Q 005352 504 VSCADSQVRILQGPNVI--GKY-KGLRRSG-NQLSACFTS--DGKHIVSAGEDSNVYMWNCIG 560 (701)
Q Consensus 504 ~~s~dg~I~iwd~~~~~--~~~-~~~~~~~-~v~~l~~s~--dg~~l~sgs~Dg~I~iWd~~~ 560 (701)
+++.|+.|++||..... ... ....|.. .|.+++|+| ++++|++|+.||.|+||+++.
T Consensus 266 s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 266 SVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred EEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 99999999999976532 111 1234665 899999999 789999999999999999864
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-36 Score=324.99 Aligned_cols=300 Identities=20% Similarity=0.307 Sum_probs=243.2
Q ss_pred eecccCcceeeec--CccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEE
Q 005352 199 VVDKQGEGERVRL--NEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRL 276 (701)
Q Consensus 199 ~~~~~~~~~~~~~--~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~i 276 (701)
+..|.+.+.++.+ ++..+++++.|++|+||+..... ....+.+|...|.+++|+|+|++||+|+.|+.|++
T Consensus 62 l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~-------~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~i 134 (380)
T 3iz6_a 62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQ-------KTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSI 134 (380)
T ss_dssp ECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTE-------EEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEE
T ss_pred ccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-------cceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEE
Confidence 3456777776654 55678999999999999875432 22457889999999999999999999999999999
Q ss_pred EEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccC
Q 005352 277 WQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGE 356 (701)
Q Consensus 277 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 356 (701)
|++.+...... .......+.+|.+.
T Consensus 135 w~~~~~~~~~~-------------------------------------------------------~~~~~~~~~gh~~~ 159 (380)
T 3iz6_a 135 FNLSSQADRDG-------------------------------------------------------NMPVSRVLTGHKGY 159 (380)
T ss_dssp EECCCCSSCCC-------------------------------------------------------SSTTCCBCCCCSSC
T ss_pred EECCCCccccC-------------------------------------------------------CccceeeccCCCcc
Confidence 99875421000 00223456789999
Q ss_pred eEEEEEecCC--eEEEEECCCcEEEEECCCCeeeeee------cCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCC-C
Q 005352 357 ILDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVF------PHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS-C 427 (701)
Q Consensus 357 I~~l~~s~~~--~l~s~s~dg~I~iWd~~~~~~~~~~------~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~-~ 427 (701)
|.++.|+|++ .|++|+.|++|++||+.+++++..+ .|...|.+++|+|.++++|++|+.|++|++||++. .
T Consensus 160 v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~ 239 (380)
T 3iz6_a 160 ASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITS 239 (380)
T ss_dssp CCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTC
T ss_pred eEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCC
Confidence 9999999975 8999999999999999999998876 27889999999887889999999999999999984 3
Q ss_pred cEE-EEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEE
Q 005352 428 HVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSC 506 (701)
Q Consensus 428 ~~~-~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s 506 (701)
+.+ .+..|...|++++|+|++++|++|+.||+|++||+++++......... .....+...|++++|+| ++.+|++|+
T Consensus 240 ~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~-~g~~l~~g~ 317 (380)
T 3iz6_a 240 RAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREP-DRNDNELPIVTSVAFSI-SGRLLFAGY 317 (380)
T ss_dssp CCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCC-SSSCCSSCSCSEEEECS-SSSEEEEEC
T ss_pred cceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccc-cccccccCceEEEEECC-CCCEEEEEE
Confidence 433 556789999999999999999999999999999999887643221110 11122334589999999 789999999
Q ss_pred CCCcEEEEeCCccceeeec----ccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 507 ADSQVRILQGPNVIGKYKG----LRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 507 ~dg~I~iwd~~~~~~~~~~----~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
.|+.|++||.......... ..|...|.+++|+|+|++|++|+.|+.|+||++...+
T Consensus 318 ~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 318 SNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp TTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred CCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 9999999998765544333 4588999999999999999999999999999998765
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-35 Score=313.61 Aligned_cols=290 Identities=18% Similarity=0.263 Sum_probs=224.4
Q ss_pred ccCcceee--ecCccccccccc------cceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCc
Q 005352 202 KQGEGERV--RLNEEDAMFCSK------VQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGV 273 (701)
Q Consensus 202 ~~~~~~~~--~~~~~~~~~~~~------d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~ 273 (701)
|+..+.++ ++++..+++++. |+.|++|+......... ......+|...|++++|+|++. +++++.||+
T Consensus 41 H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~---~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~ 116 (357)
T 4g56_B 41 MEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNES---LCTAGVQTEAGVTDVAWVSEKG-ILVASDSGA 116 (357)
T ss_dssp CCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGG---GCSEEEECSSCEEEEEEETTTE-EEEEETTSC
T ss_pred ccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCccee---EecccCCCCCCEEEEEEcCCCC-EEEEECCCE
Confidence 55556555 455667777776 67788887543322111 1223457999999999999985 556788999
Q ss_pred EEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCC
Q 005352 274 VRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGH 353 (701)
Q Consensus 274 I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 353 (701)
|+|||+.+++... .......+|
T Consensus 117 v~lWd~~~~~~~~----------------------------------------------------------~~~~~~~~h 138 (357)
T 4g56_B 117 VELWEILEKESLL----------------------------------------------------------VNKFAKYEH 138 (357)
T ss_dssp EEEC--------C----------------------------------------------------------CCCEEECCC
T ss_pred EEEeeccccceeE----------------------------------------------------------EEeeccCCC
Confidence 9999998765321 112334679
Q ss_pred ccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEE
Q 005352 354 SGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD 431 (701)
Q Consensus 354 ~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~ 431 (701)
...|++++|+|++ +|++++.|++|++||+.+++++..+. |...|++++|+|....+|++++.||.|++||+++++...
T Consensus 139 ~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~ 218 (357)
T 4g56_B 139 DDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPAT 218 (357)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBC
T ss_pred CCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceee
Confidence 9999999999999 99999999999999999999999887 899999999999444689999999999999999887664
Q ss_pred E---ecCCCcEEEEEEeeCC-CeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEEC
Q 005352 432 W---VDIRQIVTAVCYRPDG-QGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCA 507 (701)
Q Consensus 432 ~---~~~~~~i~~i~~sp~g-~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~ 507 (701)
. ..+...+++++|+|++ .+|++|+.|+.|++||+++.+.... ...+...|++++|+|++..+|++++.
T Consensus 219 ~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~--------~~~~~~~v~~l~~sp~~~~~lasgs~ 290 (357)
T 4g56_B 219 RIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQT--------SAVHSQNITGLAYSYHSSPFLASISE 290 (357)
T ss_dssp BCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEE--------ECCCSSCEEEEEECSSSSCCEEEEET
T ss_pred eeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEE--------EeccceeEEEEEEcCCCCCEEEEEeC
Confidence 3 3456789999999974 6788999999999999988764321 23456789999999966688999999
Q ss_pred CCcEEEEeCCccceeeecccCCCCeEEEEEec-CCCEEEEEeCCCcEEEEeCCCCC
Q 005352 508 DSQVRILQGPNVIGKYKGLRRSGNQLSACFTS-DGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 508 dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~-dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
|++|+|||+..... +....|...|++++|+| ++.+|+|++.||+|++|++....
T Consensus 291 D~~i~iwd~~~~~~-~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 291 DCTVAVLDADFSEV-FRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp TSCEEEECTTSCEE-EEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC---
T ss_pred CCEEEEEECCCCcE-eEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence 99999999986543 33446899999999998 79999999999999999997654
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-35 Score=360.24 Aligned_cols=449 Identities=17% Similarity=0.189 Sum_probs=325.9
Q ss_pred cccCcceeeecCc--c--ccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEE
Q 005352 201 DKQGEGERVRLNE--E--DAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRL 276 (701)
Q Consensus 201 ~~~~~~~~~~~~~--~--~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~i 276 (701)
.|...+.++.+.+ + .+++++.|+.|++|+..... ....+.+|.+.|++++|+|++++|++|+.||.|++
T Consensus 697 ~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~-------~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~v 769 (1249)
T 3sfz_A 697 EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKE-------CRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRL 769 (1249)
T ss_dssp CCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSS-------EEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEE
T ss_pred CCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcc-------hhheecCCCCCEEEEEEecCCCEEEEEECCCeEEE
Confidence 4556666666544 2 46678999999999986542 22457789999999999999999999999999999
Q ss_pred EEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEE-cCCcc
Q 005352 277 WQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEF-HGHSG 355 (701)
Q Consensus 277 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~ 355 (701)
||+.+++....+...................+..+.+.+.+..++... ...+.+++.... ..+..+ .+|..
T Consensus 770 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~----~~~v~~~d~~~~----~~~~~~~~~~~~ 841 (1249)
T 3sfz_A 770 WDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA----KNKVLLFDIHTS----GLLAEIHTGHHS 841 (1249)
T ss_dssp EEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE----TTEEEEEETTTC----CEEEEEECSSSS
T ss_pred EeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc----CCcEEEEEecCC----CceeEEcCCCCC
Confidence 999998877666543221111111111112233344444444333321 223333332221 223333 48999
Q ss_pred CeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCC-------
Q 005352 356 EILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS------- 426 (701)
Q Consensus 356 ~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~------- 426 (701)
.|.+++|+|++ ++++++.|+.|++||+.++..+..+. |...|++++|+| ++++|++++.||.|++||+.+
T Consensus 842 ~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp-dg~~l~s~s~dg~v~vw~~~~~~~~~~~ 920 (1249)
T 3sfz_A 842 TIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSP-DGSSFLTASDDQTIRVWETKKVCKNSAI 920 (1249)
T ss_dssp CCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEHHHHHSCCSS
T ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECC-CCCEEEEEeCCCeEEEEEccccceeeee
Confidence 99999999999 99999999999999999999888876 889999999999 999999999999999998532
Q ss_pred ------------------------------------------------------------------------CcEE-EEe
Q 005352 427 ------------------------------------------------------------------------CHVV-DWV 433 (701)
Q Consensus 427 ------------------------------------------------------------------------~~~~-~~~ 433 (701)
++.. ...
T Consensus 921 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~ 1000 (1249)
T 3sfz_A 921 VLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGV 1000 (1249)
T ss_dssp SEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECC
T ss_pred cccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecc
Confidence 1111 122
Q ss_pred cCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEE
Q 005352 434 DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRI 513 (701)
Q Consensus 434 ~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~i 513 (701)
.|...|++++|+|+++++++++.||.|++||+.++.... ...+...|.++.|+| ...+++++.|+.|++
T Consensus 1001 ~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~---------~~~~~~~v~~~~~~~--~~~l~~~~~dg~v~v 1069 (1249)
T 3sfz_A 1001 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF---------LQAHQETVKDFRLLQ--DSRLLSWSFDGTVKV 1069 (1249)
T ss_dssp CCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEEC---------CBCCSSCEEEEEECS--SSEEEEEESSSEEEE
T ss_pred cCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEE---------EecCCCcEEEEEEcC--CCcEEEEECCCcEEE
Confidence 466778999999999999999999999999999876532 335668899999999 457889999999999
Q ss_pred EeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCCCCccc--cccccccccccCCceEE-ecCCC
Q 005352 514 LQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQ--AKTIRSLERFTTNASIA-IPWCG 590 (701)
Q Consensus 514 wd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~--~~~~~~~~~~~~~~~~a-~~~~~ 590 (701)
||+.+.........|...|.+++|+|++++|++++.||.|++||+.+++...... ...+..+...+.+..++ ...+|
T Consensus 1070 wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg 1149 (1249)
T 3sfz_A 1070 WNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNG 1149 (1249)
T ss_dssp EETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTS
T ss_pred EECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCC
Confidence 9998766555555688999999999999999999999999999998877433222 22344444444433333 33344
Q ss_pred -CCCCCCCCCCcccc-----------CCCCCCCccccCCCccccCccccccCCCCcccCCCCccCCCCccccccccchhh
Q 005352 591 -LKCGNAEKEPQLHV-----------SDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLSSASALHKS 658 (701)
Q Consensus 591 -~~~~~~~~~~~~~~-----------~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~~~~~~~~ 658 (701)
...|+......... .....+..++|+|+ +..+++++ +.+++|+......+..+..+
T Consensus 1150 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d----g~~l~s~~--g~v~vwd~~~g~~~~~~~~~------ 1217 (1249)
T 3sfz_A 1150 EIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPD----SKTLVSAG--GYLKWWNVATGDSSQTFYTN------ 1217 (1249)
T ss_dssp CCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTT----SSCEEEES--SSEEEBCSSSCBCCCCCCCS------
T ss_pred EEEEEECCCCceEEEeccccccccccccCceEEEEEECCC----CCEEEECC--CeEEEEECCCCceeeeeecc------
Confidence 35565544333222 23455788999997 55666654 89999999988877777655
Q ss_pred hhhhhhcccccccccCCCccEEEEecCCCeEeEEee
Q 005352 659 QYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFLN 694 (701)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~g~~ivTgg~DG~Irvw~~ 694 (701)
...+.+++++++ |.+|++++.||.|++|+.
T Consensus 1218 -----~~~i~~~~~s~d-g~~l~~~~~dg~v~vw~l 1247 (1249)
T 3sfz_A 1218 -----GTNLKKIHVSPD-FRTYVTVDNLGILYILQV 1247 (1249)
T ss_dssp -----SCCCCCCEECSS-SCCEEEECTTCCEEEECC
T ss_pred -----CCcccEEEECCC-CCEEEEecCCcEEEEEee
Confidence 456888899999 999999999999999984
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-35 Score=302.46 Aligned_cols=283 Identities=19% Similarity=0.252 Sum_probs=232.9
Q ss_pred ecccCcceeee--cCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEE
Q 005352 200 VDKQGEGERVR--LNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLW 277 (701)
Q Consensus 200 ~~~~~~~~~~~--~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iW 277 (701)
..|.+.+.++. +++..+++++.|+.|+||++.... ..+.+.+|..+|.+++|+|++++|++|+.|++|++|
T Consensus 10 ~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vw 82 (304)
T 2ynn_A 10 SNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQV-------EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF 82 (304)
T ss_dssp EEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE-------EEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred cCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCc-------eeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEE
Confidence 35666676554 556678899999999999976432 224577899999999999999999999999999999
Q ss_pred EeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCe
Q 005352 278 QVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEI 357 (701)
Q Consensus 278 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I 357 (701)
|+.+++ .+..+.+|...|
T Consensus 83 d~~~~~--------------------------------------------------------------~~~~~~~h~~~v 100 (304)
T 2ynn_A 83 NYNTGE--------------------------------------------------------------KVVDFEAHPDYI 100 (304)
T ss_dssp ETTTCC--------------------------------------------------------------EEEEEECCSSCE
T ss_pred ECCCCc--------------------------------------------------------------EEEEEeCCCCcE
Confidence 998764 345567899999
Q ss_pred EEEEEecCC-eEEEEECCCcEEEEECCCC-eeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEE--E
Q 005352 358 LDLSWSKNN-YLLSASIDKTVRLWRVGND-HCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD--W 432 (701)
Q Consensus 358 ~~l~~s~~~-~l~s~s~dg~I~iWd~~~~-~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~--~ 432 (701)
.+++|+|++ +|++|+.|++|++||++++ .+...+. |...|.+++|+|.++.+|++|+.|++|++||+++..... .
T Consensus 101 ~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~ 180 (304)
T 2ynn_A 101 RSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT 180 (304)
T ss_dssp EEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEE
T ss_pred EEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceec
Confidence 999999999 9999999999999999887 4445554 999999999999667899999999999999998765442 2
Q ss_pred ecCCCcEEEEEEee--CCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCc
Q 005352 433 VDIRQIVTAVCYRP--DGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQ 510 (701)
Q Consensus 433 ~~~~~~i~~i~~sp--~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~ 510 (701)
..+...+..++|+| ++.+|++|+.|+.|++||+++++.... ...|...|.+++|+| ++.+|++++.|+.
T Consensus 181 ~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~--------~~~h~~~v~~~~~~p-~~~~l~s~s~Dg~ 251 (304)
T 2ynn_A 181 TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVAT--------LEGHMSNVSFAVFHP-TLPIIISGSEDGT 251 (304)
T ss_dssp CCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEE--------EECCSSCEEEEEECS-SSSEEEEEETTSC
T ss_pred cCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCcccee--------eCCCCCCEEEEEECC-CCCEEEEEcCCCe
Confidence 34567899999987 778999999999999999998765432 234667899999999 7889999999999
Q ss_pred EEEEeCCccceeeecccCCCCeEEEEEecCCC--EEEEEeCCCcEEEEeCCCC
Q 005352 511 VRILQGPNVIGKYKGLRRSGNQLSACFTSDGK--HIVSAGEDSNVYMWNCIGH 561 (701)
Q Consensus 511 I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~--~l~sgs~Dg~I~iWd~~~~ 561 (701)
|++||..+.........+...+.+++|+|++. +|++|+.| .+.+|++.+.
T Consensus 252 i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~-g~~~~~~~~~ 303 (304)
T 2ynn_A 252 LKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDN-GFTVLSLGND 303 (304)
T ss_dssp EEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETT-EEEEEECC--
T ss_pred EEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCC-ceEEEEeccC
Confidence 99999987766666556888999999999885 57777755 4778887653
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-36 Score=356.41 Aligned_cols=405 Identities=9% Similarity=0.102 Sum_probs=272.7
Q ss_pred cccCcceeee--cCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEE
Q 005352 201 DKQGEGERVR--LNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQ 278 (701)
Q Consensus 201 ~~~~~~~~~~--~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd 278 (701)
.|...+.++. +++..+++|+.|+.|+||+...... .....|..+|++|+|+| |++|++++.|++|+|||
T Consensus 15 gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~--------~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd 85 (902)
T 2oaj_A 15 GMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEV--------VIKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLS 85 (902)
T ss_dssp ECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEE--------EEECSSCCCEEEEEEET-TTEEEEEETTCEEEEEE
T ss_pred CCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEE--------EEEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEE
Confidence 4556666554 5566788899999999998643211 01224788999999999 88999999999999999
Q ss_pred eecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeE
Q 005352 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEIL 358 (701)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~ 358 (701)
+.+++.+ ..+. |...|+
T Consensus 86 ~~~~~~~--------------------------------------------------------------~~~~-~~~~V~ 102 (902)
T 2oaj_A 86 LYSQKVL--------------------------------------------------------------TTVF-VPGKIT 102 (902)
T ss_dssp TTTCSEE--------------------------------------------------------------EEEE-CSSCEE
T ss_pred CCCCcEE--------------------------------------------------------------EEEc-CCCCEE
Confidence 9876432 2222 557899
Q ss_pred EEEEecCC-eEEEEECCCcEEEEECCCCeeee-----------ee-cCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCC
Q 005352 359 DLSWSKNN-YLLSASIDKTVRLWRVGNDHCLR-----------VF-PHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVL 425 (701)
Q Consensus 359 ~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~-----------~~-~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~ 425 (701)
+++|+|++ +|++|+.||+|++||+.++++.. .+ .|.+.|++++|+|.+...|++|+.||.| +||++
T Consensus 103 ~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~ 181 (902)
T 2oaj_A 103 SIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLV 181 (902)
T ss_dssp EEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETT
T ss_pred EEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECC
Confidence 99999999 99999999999999999987641 11 2888999999999445789999999999 99999
Q ss_pred CCcEEEEecC-------------------CCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEe-eccc---
Q 005352 426 SCHVVDWVDI-------------------RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICV-HSKK--- 482 (701)
Q Consensus 426 ~~~~~~~~~~-------------------~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~-~~~~--- 482 (701)
+++.+..+.. ...|++++|+|+|++|++|+.||.|++||+++++......+.. ....
T Consensus 182 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~ 261 (902)
T 2oaj_A 182 ENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQP 261 (902)
T ss_dssp TTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCT
T ss_pred CCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCC
Confidence 9987755432 3679999999999999999999999999998876532110000 0000
Q ss_pred ---C---CCCCCeeEEEEecC-----------------------------------------------------------
Q 005352 483 ---K---APCKRITGFQFLPQ----------------------------------------------------------- 497 (701)
Q Consensus 483 ---~---~~~~~i~~l~~~p~----------------------------------------------------------- 497 (701)
. .+...|++++|++.
T Consensus 262 ~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 341 (902)
T 2oaj_A 262 DYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPT 341 (902)
T ss_dssp TCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSS
T ss_pred cCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCC
Confidence 0 11224555555321
Q ss_pred ---------------------CCCEEEEEECCCcEEEEeCCccceeee-------cccCCCCeE----------------
Q 005352 498 ---------------------DSSKVMVSCADSQVRILQGPNVIGKYK-------GLRRSGNQL---------------- 533 (701)
Q Consensus 498 ---------------------~~~~l~~~s~dg~I~iwd~~~~~~~~~-------~~~~~~~v~---------------- 533 (701)
++..+++++.|+.|++||+.+...... ...|...|+
T Consensus 342 ~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~ 421 (902)
T 2oaj_A 342 NVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGAL 421 (902)
T ss_dssp SSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHH
T ss_pred CCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHH
Confidence 112344444455566666532211110 011223333
Q ss_pred ------------------EEEEecCCCEEEEEeCCCcEEEEeCCCCCCCCc-------------cccccccccccccCCc
Q 005352 534 ------------------SACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAH-------------DQAKTIRSLERFTTNA 582 (701)
Q Consensus 534 ------------------~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~~~-------------~~~~~~~~~~~~~~~~ 582 (701)
+++|+|++++|+||+.|++|++||+.++..... .....+.++...+.+.
T Consensus 422 ~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~ 501 (902)
T 2oaj_A 422 SAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETL 501 (902)
T ss_dssp HTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTT
T ss_pred hcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCC
Confidence 445578899999999999999999998853211 0111233333333333
Q ss_pred eEEec-CCCC-CCCCCCCCC---------------------------------------------ccc--cCCCCCCCcc
Q 005352 583 SIAIP-WCGL-KCGNAEKEP---------------------------------------------QLH--VSDDDSPENL 613 (701)
Q Consensus 583 ~~a~~-~~~~-~~~~~~~~~---------------------------------------------~~~--~~~~~~~~~l 613 (701)
.+|.. ..+. ..|+..... ... ..+...+..+
T Consensus 502 ~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~sv 581 (902)
T 2oaj_A 502 ELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAI 581 (902)
T ss_dssp EEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEE
T ss_pred eEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEE
Confidence 33322 2222 334322110 011 1245567888
Q ss_pred ccCCCccccCccccccCCCCcccCCCCccCCCCc-----ccc-ccccchhhhhhhhhccccccccc-----CCC--ccEE
Q 005352 614 AFAPARFSLGQEYVFESFPKGCATWPEEKLPALS-----QLS-SASALHKSQYKFLKSSCLCTTSS-----HAW--GLVI 680 (701)
Q Consensus 614 ~~sp~~~~~~~~~~~~s~d~~~~~W~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~~~-----~~~--g~~i 680 (701)
+|+|+ + .+++++.|+.+++|+.+....+. .+. +| .+.|++++|+ ++. +++|
T Consensus 582 afSpd----G-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh-----------~~~V~sv~Fs~~~~~~Dg~~~~~l 645 (902)
T 2oaj_A 582 NNSNI----G-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQ-----------SACVTCIEFVIMEYGDDGYSSILM 645 (902)
T ss_dssp EECBT----S-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSC-----------CCCEEEEEEEEEECTTSSSEEEEE
T ss_pred EecCC----c-EEEEEeCCCcEEEEECCCCeEEEEeehhHhcccc-----------ccceEEEEEEEEecCCCCCcceEE
Confidence 99997 6 78899999999999987655432 121 22 4568888898 761 5999
Q ss_pred EEecCCCeEeEEee
Q 005352 681 VTAGWDGRIRSFLN 694 (701)
Q Consensus 681 vTgg~DG~Irvw~~ 694 (701)
++|+.||+||+|+.
T Consensus 646 ~sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 646 VCGTDMGEVITYKI 659 (902)
T ss_dssp EEEETTSEEEEEEE
T ss_pred EEEecCCcEEEEEE
Confidence 99999999999985
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-36 Score=323.46 Aligned_cols=339 Identities=18% Similarity=0.218 Sum_probs=257.6
Q ss_pred ccCCCcEEEEEEccCCC-EEEEEeCCCcEEEEEe----ecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceee
Q 005352 247 QAHDGSILTMKFSPDGQ-YLASAGDDGVVRLWQV----VEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISIL 321 (701)
Q Consensus 247 ~~H~~~I~~l~fspdg~-~Lasgs~Dg~I~iWd~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (701)
..|.+.|++++|+|+|+ +||+|+.||.|++|++ .+++.+..+.. .
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~------------------------------~ 91 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTI------------------------------I 91 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEE------------------------------E
T ss_pred eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccc------------------------------c
Confidence 45779999999999999 9999999999999999 66652110000 0
Q ss_pred EEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEE
Q 005352 322 KSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTC 399 (701)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~ 399 (701)
..+... ........+|...|++++|+|++ +|++++.||.|++|| .+++.+..+. |...|.+
T Consensus 92 ~~~~~~----------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~ 154 (425)
T 1r5m_A 92 AELRHP----------------FALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVS 154 (425)
T ss_dssp EEEECC----------------CCCC------CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEE
T ss_pred cccccc----------------ccccccccCCCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEE
Confidence 000000 00111234578899999999999 999999999999999 5666666665 8999999
Q ss_pred EEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecC-CCc---------------EEEEEEeeCCCeEEEEecCCcEEEE
Q 005352 400 VHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDI-RQI---------------VTAVCYRPDGQGGIVGSMMGDCRFY 463 (701)
Q Consensus 400 l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~---------------i~~i~~sp~g~~l~~gs~dg~v~i~ 463 (701)
++|+| ++++|++++.|+.|++||+.+++.+..... ... +.+++|+|++ .+++++.+|.|++|
T Consensus 155 ~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~ 232 (425)
T 1r5m_A 155 VKWNK-DGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVY 232 (425)
T ss_dssp EEECT-TSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEE
T ss_pred EEECC-CCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEE
Confidence 99999 999999999999999999999887755443 333 8899999985 58899999999999
Q ss_pred ECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCE
Q 005352 464 NVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKH 543 (701)
Q Consensus 464 d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~ 543 (701)
|+.+.+.... ...+...|.+++|+| ++.+|++++.|+.|++||+...........|...|.+++|+|++ +
T Consensus 233 d~~~~~~~~~--------~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~ 302 (425)
T 1r5m_A 233 QITEKTPTGK--------LIGHHGPISVLEFND-TNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-K 302 (425)
T ss_dssp ETTCSSCSEE--------ECCCSSCEEEEEEET-TTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-E
T ss_pred EcCCCceeee--------eccCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-E
Confidence 9998654321 234567899999999 68899999999999999998766555555688999999999999 9
Q ss_pred EEEEeCCCcEEEEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccC
Q 005352 544 IVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLG 623 (701)
Q Consensus 544 l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~ 623 (701)
|++++.|+.|++||+.+++.. ..+ ......+..++|+|+ +
T Consensus 303 l~~~~~d~~i~i~d~~~~~~~--------~~~----------------------------~~~~~~i~~~~~s~~----~ 342 (425)
T 1r5m_A 303 VISCSMDGSVRLWSLKQNTLL--------ALS----------------------------IVDGVPIFAGRISQD----G 342 (425)
T ss_dssp EEEEETTSEEEEEETTTTEEE--------EEE----------------------------ECTTCCEEEEEECTT----S
T ss_pred EEEEeCCCcEEEEECCCCcEe--------Eec----------------------------ccCCccEEEEEEcCC----C
Confidence 999999999999999876411 000 011234566778886 6
Q ss_pred ccccccCCCCcccCCCCccCC--------------------CCccccccccchhhhhhhhhc--ccccccccCCCccEEE
Q 005352 624 QEYVFESFPKGCATWPEEKLP--------------------ALSQLSSASALHKSQYKFLKS--SCLCTTSSHAWGLVIV 681 (701)
Q Consensus 624 ~~~~~~s~d~~~~~W~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~iv 681 (701)
..+++++.++.+++|+..... .+..+..| .. .+.+++++++ +.+|+
T Consensus 343 ~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~v~~~~~s~~-~~~l~ 410 (425)
T 1r5m_A 343 QKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSS-----------QDNDYIFDLSWNCA-GNKIS 410 (425)
T ss_dssp SEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCT-----------TCCCCEEEEEECTT-SSEEE
T ss_pred CEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCc-----------ccCCceEEEEccCC-CceEE
Confidence 788889999999999987665 33333333 23 6788889898 99999
Q ss_pred EecCCCeEeEEeecC
Q 005352 682 TAGWDGRIRSFLNYG 696 (701)
Q Consensus 682 Tgg~DG~Irvw~~~g 696 (701)
+|+.||.|++|+.-|
T Consensus 411 ~~~~dg~i~iw~~~g 425 (425)
T 1r5m_A 411 VAYSLQEGSVVAIPG 425 (425)
T ss_dssp EEESSSCCEEEECCC
T ss_pred EEecCceEEEEeecC
Confidence 999999999998644
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-36 Score=320.75 Aligned_cols=295 Identities=17% Similarity=0.327 Sum_probs=237.1
Q ss_pred CceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeE
Q 005352 243 GQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (701)
Q Consensus 243 ~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (701)
.+.+++|.+.|++++|+|++++||||+.||+|+|||+.+++.
T Consensus 59 ~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~-------------------------------------- 100 (380)
T 3iz6_a 59 CRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQK-------------------------------------- 100 (380)
T ss_dssp EEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEE--------------------------------------
T ss_pred eecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc--------------------------------------
Confidence 356889999999999999999999999999999999877642
Q ss_pred EeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCe-------eeeee-cC
Q 005352 323 SLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDH-------CLRVF-PH 393 (701)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~-------~~~~~-~h 393 (701)
...+.+|...|.+++|+|++ +|++|+.|+.|++||+.+.. ....+ .|
T Consensus 101 ------------------------~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh 156 (380)
T 3iz6_a 101 ------------------------THAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGH 156 (380)
T ss_dssp ------------------------EEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCC
T ss_pred ------------------------ceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCC
Confidence 34556789999999999999 99999999999999997542 22223 38
Q ss_pred CCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEe------cCCCcEEEEEEee-CCCeEEEEecCCcEEEEECC
Q 005352 394 SNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV------DIRQIVTAVCYRP-DGQGGIVGSMMGDCRFYNVS 466 (701)
Q Consensus 394 ~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~------~~~~~i~~i~~sp-~g~~l~~gs~dg~v~i~d~~ 466 (701)
.+.|.+++|.|..+..|++|+.|++|++||+.+++.+..+ .|...|.+++|+| +++.|++|+.|+.|++||++
T Consensus 157 ~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~ 236 (380)
T 3iz6_a 157 KGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLR 236 (380)
T ss_dssp SSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETT
T ss_pred CcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECC
Confidence 8999999999955678999999999999999999877544 5778899999987 88999999999999999998
Q ss_pred CCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeeccc-------CCCCeEEEEEec
Q 005352 467 DNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLR-------RSGNQLSACFTS 539 (701)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~-------~~~~v~~l~~s~ 539 (701)
...... .....|...|.+++|+| ++.+|++++.|++|++||+.+......... +...|++++|+|
T Consensus 237 ~~~~~~-------~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 308 (380)
T 3iz6_a 237 ITSRAV-------RTYHGHEGDINSVKFFP-DGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSI 308 (380)
T ss_dssp TTCCCC-------EEECCCSSCCCEEEECT-TSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECS
T ss_pred CCCcce-------EEECCcCCCeEEEEEec-CCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECC
Confidence 432211 11345678899999999 789999999999999999986544332211 223589999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCc
Q 005352 540 DGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPAR 619 (701)
Q Consensus 540 dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~ 619 (701)
+|++|++|+.||.|++||+.+++... .+. .....+...+..++|+|+
T Consensus 309 ~g~~l~~g~~dg~i~vwd~~~~~~~~--------~~~------------------------~~~~~h~~~v~~l~~s~d- 355 (380)
T 3iz6_a 309 SGRLLFAGYSNGDCYVWDTLLAEMVL--------NLG------------------------TLQNSHEGRISCLGLSSD- 355 (380)
T ss_dssp SSSEEEEECTTSCEEEEETTTCCEEE--------EEC------------------------CSCSSCCCCCCEEEECSS-
T ss_pred CCCEEEEEECCCCEEEEECCCCceEE--------EEe------------------------cccCCCCCceEEEEECCC-
Confidence 99999999999999999987765210 000 000112445778899997
Q ss_pred cccCccccccCCCCcccCCCCccC
Q 005352 620 FSLGQEYVFESFPKGCATWPEEKL 643 (701)
Q Consensus 620 ~~~~~~~~~~s~d~~~~~W~~~~~ 643 (701)
+..+++++.|+.+++|+....
T Consensus 356 ---g~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 356 ---GSALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp ---SSEEEEECTTSCEEEEECCSS
T ss_pred ---CCEEEEeeCCCCEEEEecCCC
Confidence 778999999999999997654
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-35 Score=302.62 Aligned_cols=287 Identities=28% Similarity=0.486 Sum_probs=232.5
Q ss_pred ceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEE
Q 005352 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (701)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (701)
..+.+|.+.|++++|+|++++||+|+.||.|++|++.+++
T Consensus 17 ~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~---------------------------------------- 56 (312)
T 4ery_A 17 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK---------------------------------------- 56 (312)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC----------------------------------------
T ss_pred EEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc----------------------------------------
Confidence 4678999999999999999999999999999999987653
Q ss_pred eeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEE
Q 005352 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVH 401 (701)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~ 401 (701)
....+.+|...|.+++|+|++ +|++++.|+.|++||+.+++++..+. |...|.+++
T Consensus 57 ----------------------~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~ 114 (312)
T 4ery_A 57 ----------------------FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN 114 (312)
T ss_dssp ----------------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred ----------------------cchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEE
Confidence 234567899999999999999 99999999999999999999988886 899999999
Q ss_pred EeeCCCCEEEEEEcCCcEEEEeCCCCcEEE-EecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeec
Q 005352 402 FNPVDDNYFISGSIDGKVRIWAVLSCHVVD-WVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHS 480 (701)
Q Consensus 402 f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~-~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~ 480 (701)
|+| ++++|++|+.|+.|++||+++++.+. ...|..+|.+++|+|++++|++++.||.|++||+++++....
T Consensus 115 ~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~------- 186 (312)
T 4ery_A 115 FNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT------- 186 (312)
T ss_dssp ECS-SSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE-------
T ss_pred EcC-CCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeE-------
Confidence 999 99999999999999999999988774 445788999999999999999999999999999998764321
Q ss_pred ccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCC--eEEEEEe-cCCCEEEEEeCCCcEEEEe
Q 005352 481 KKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGN--QLSACFT-SDGKHIVSAGEDSNVYMWN 557 (701)
Q Consensus 481 ~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~--v~~l~~s-~dg~~l~sgs~Dg~I~iWd 557 (701)
....+...+..++|+| ++.+|++++.|+.|++||+.+.........|... .....++ +++.+|++|+.||.|++||
T Consensus 187 ~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd 265 (312)
T 4ery_A 187 LIDDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 265 (312)
T ss_dssp ECCSSCCCEEEEEECT-TSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEE
T ss_pred EeccCCCceEEEEECC-CCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEE
Confidence 1233456789999999 7899999999999999999876544443334332 2333444 6789999999999999999
Q ss_pred CCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccC--CCCcc
Q 005352 558 CIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFES--FPKGC 635 (701)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s--~d~~~ 635 (701)
+.+++. +..+. .+...+..++++|+ +..+++++ .|+.+
T Consensus 266 ~~~~~~--------~~~~~----------------------------~h~~~v~~~~~~p~----~~~l~s~~~~~d~~i 305 (312)
T 4ery_A 266 LQTKEI--------VQKLQ----------------------------GHTDVVISTACHPT----ENIIASAALENDKTI 305 (312)
T ss_dssp TTTCCE--------EEEEC----------------------------CCSSCEEEEEECSS----SSEEEEEECTTTCCE
T ss_pred CCCchh--------hhhhh----------------------------ccCCcEEEEeecCc----CCceEEEEccCCccE
Confidence 987652 11110 11223455677776 55566654 68999
Q ss_pred cCCCCc
Q 005352 636 ATWPEE 641 (701)
Q Consensus 636 ~~W~~~ 641 (701)
++|+.+
T Consensus 306 ~~W~~d 311 (312)
T 4ery_A 306 KLWKSD 311 (312)
T ss_dssp EEEECC
T ss_pred EEecCC
Confidence 999854
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-36 Score=325.99 Aligned_cols=341 Identities=17% Similarity=0.227 Sum_probs=262.0
Q ss_pred CCcEEEEEEccCCC-EEEEE----------eCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccc
Q 005352 250 DGSILTMKFSPDGQ-YLASA----------GDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKI 318 (701)
Q Consensus 250 ~~~I~~l~fspdg~-~Lasg----------s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (701)
...|.+++|+|+|+ +||+| +.|+.|+|||+.++...
T Consensus 12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~--------------------------------- 58 (416)
T 2pm9_A 12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSE--------------------------------- 58 (416)
T ss_dssp EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGC---------------------------------
T ss_pred hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCC---------------------------------
Confidence 34688999999987 99999 89999999999876421
Q ss_pred eeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCC----Ceeeeeec-
Q 005352 319 SILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGN----DHCLRVFP- 392 (701)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~----~~~~~~~~- 392 (701)
+++.. ..|...|.+++|+|++ +|++++.|+.|++||+.+ .+.+..+.
T Consensus 59 --------------------------~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~ 111 (416)
T 2pm9_A 59 --------------------------KPIAS-LQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSN 111 (416)
T ss_dssp --------------------------SCSCC-CCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCC
T ss_pred --------------------------cEEEE-EecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccC
Confidence 01111 2478899999999999 999999999999999988 34555555
Q ss_pred CCCCeEEEEEeeCC-CCEEEEEEcCCcEEEEeCCCCc------EEE----EecCCCcEEEEEEeeC-CCeEEEEecCCcE
Q 005352 393 HSNYVTCVHFNPVD-DNYFISGSIDGKVRIWAVLSCH------VVD----WVDIRQIVTAVCYRPD-GQGGIVGSMMGDC 460 (701)
Q Consensus 393 h~~~V~~l~f~p~~-~~~l~sgs~dg~v~iwd~~~~~------~~~----~~~~~~~i~~i~~sp~-g~~l~~gs~dg~v 460 (701)
|...|++++|+| + +++|++++.|+.|++||+.+++ ... ...|...|.+++|+|+ +..|++++.||.|
T Consensus 112 h~~~v~~~~~~~-~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v 190 (416)
T 2pm9_A 112 HSSSVKTVKFNA-KQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFA 190 (416)
T ss_dssp SSSCCCEEEECS-SSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCE
T ss_pred CccceEEEEEcC-CCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCE
Confidence 999999999999 6 8999999999999999999876 222 2467889999999999 7899999999999
Q ss_pred EEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCC---cEEEEeCCccc-eeeecc-cCCCCeEEE
Q 005352 461 RFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADS---QVRILQGPNVI-GKYKGL-RRSGNQLSA 535 (701)
Q Consensus 461 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg---~I~iwd~~~~~-~~~~~~-~~~~~v~~l 535 (701)
++||+++.+...... .......+...|.+++|+|++..++++++.|+ .|++||+.... ...... .|...|.++
T Consensus 191 ~iwd~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~ 268 (416)
T 2pm9_A 191 SIWDLKAKKEVIHLS--YTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSL 268 (416)
T ss_dssp EEEETTTTEEEEEEC--CCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEE
T ss_pred EEEECCCCCcceEEe--ccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEE
Confidence 999999877543221 11112233678999999996568999999999 99999998753 223333 488999999
Q ss_pred EEec-CCCEEEEEeCCCcEEEEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccc
Q 005352 536 CFTS-DGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLA 614 (701)
Q Consensus 536 ~~s~-dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 614 (701)
+|+| ++++|++++.||.|++||+.+++.. ..+ ..+...+..++
T Consensus 269 ~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~--------~~~----------------------------~~~~~~v~~~~ 312 (416)
T 2pm9_A 269 DWCHQDEHLLLSSGRDNTVLLWNPESAEQL--------SQF----------------------------PARGNWCFKTK 312 (416)
T ss_dssp EECSSCSSCEEEEESSSEEEEECSSSCCEE--------EEE----------------------------ECSSSCCCCEE
T ss_pred EeCCCCCCeEEEEeCCCCEEEeeCCCCccc--------eee----------------------------cCCCCceEEEE
Confidence 9999 9999999999999999999876521 111 01133566788
Q ss_pred cCCCccccCccccccCCCCcccCCCCccCCCCccccc--------------------ccc-----chhhhhhhhhccccc
Q 005352 615 FAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLSS--------------------ASA-----LHKSQYKFLKSSCLC 669 (701)
Q Consensus 615 ~sp~~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~--------------------~~~-----~~~~~~~~~~~~~~~ 669 (701)
|+|++ ...+++++.|+.+++|+............ +.. .. ...+++...+.+
T Consensus 313 ~s~~~---~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 388 (416)
T 2pm9_A 313 FAPEA---PDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHL-QAPTWYGEPSPA 388 (416)
T ss_dssp ECTTC---TTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCC-CCCSTTCCCSCC
T ss_pred ECCCC---CCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccc-cCCccccCCccc
Confidence 89961 26788999999999999877664332211 000 00 111224556778
Q ss_pred ccccCCCccEEEEecCCCeEeEEee
Q 005352 670 TTSSHAWGLVIVTAGWDGRIRSFLN 694 (701)
Q Consensus 670 ~~~~~~~g~~ivTgg~DG~Irvw~~ 694 (701)
++++++ |++|++|+.||.|++|+.
T Consensus 389 ~~~s~d-g~~la~~~~d~~v~~w~~ 412 (416)
T 2pm9_A 389 AHWAFG-GKLVQITPDGKGVSITNP 412 (416)
T ss_dssp CEEETT-TEEECBCTTSSCBCCBCC
T ss_pred eEEeeC-CeEEEEeCCCCeEEEEEe
Confidence 889999 999999999999999984
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-35 Score=313.82 Aligned_cols=314 Identities=19% Similarity=0.305 Sum_probs=238.2
Q ss_pred cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeec
Q 005352 248 AHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRT 327 (701)
Q Consensus 248 ~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (701)
+|.+.|++++|+|+|++||+|+ |+.++||++.+++.+..+..+..... .
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~-----------------~------------- 110 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANK-----------------D------------- 110 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-------------------------------------
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCcccccc-----------------c-------------
Confidence 5999999999999999999987 68999999988876554432210000 0
Q ss_pred CCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeC
Q 005352 328 SESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPV 405 (701)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~ 405 (701)
.. .........+...|.+++|+|++ +|++|+.|++|++||+.+++.+..+. |...|++++|+|
T Consensus 111 ---------~~-----~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p- 175 (393)
T 1erj_A 111 ---------PE-----NLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP- 175 (393)
T ss_dssp ------------------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-
T ss_pred ---------cc-----cccccccCCCceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcC-
Confidence 00 00001112345569999999999 99999999999999999999988886 999999999999
Q ss_pred CCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEee-CCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCC
Q 005352 406 DDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRP-DGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKA 484 (701)
Q Consensus 406 ~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp-~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~ 484 (701)
++++|++++.|++|++||+++++......+...+.+++|+| ++++|++|+.||.|++||++++......... ......
T Consensus 176 ~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~-~~~~~~ 254 (393)
T 1erj_A 176 SGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSE-NESGTG 254 (393)
T ss_dssp TSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC-------CC
T ss_pred CCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeeccc-ccCCCC
Confidence 99999999999999999999999888788888999999999 8999999999999999999987654322111 111245
Q ss_pred CCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccc------------eeeecccCCCCeEEEEEecCCCEEEEEeCCCc
Q 005352 485 PCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVI------------GKYKGLRRSGNQLSACFTSDGKHIVSAGEDSN 552 (701)
Q Consensus 485 ~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~------------~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~ 552 (701)
|...|.+++|+| ++.+|++++.|+.|++||+.... .......|...|.+++|+|++.+|++|+.|+.
T Consensus 255 h~~~v~~v~~~~-~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~ 333 (393)
T 1erj_A 255 HKDSVYSVVFTR-DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRG 333 (393)
T ss_dssp CSSCEEEEEECT-TSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSE
T ss_pred CCCCEEEEEECC-CCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCe
Confidence 778899999999 78999999999999999986421 22333458889999999999999999999999
Q ss_pred EEEEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCC
Q 005352 553 VYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFP 632 (701)
Q Consensus 553 I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d 632 (701)
|++||+.+++. +..+.. +...+.++.|... ..++|+ +..+++++.|
T Consensus 334 v~iwd~~~~~~--------~~~l~~-h~~~v~~v~~~~~---------------------~~~~p~----~~~l~sgs~D 379 (393)
T 1erj_A 334 VLFWDKKSGNP--------LLMLQG-HRNSVISVAVANG---------------------SSLGPE----YNVFATGSGD 379 (393)
T ss_dssp EEEEETTTCCE--------EEEEEC-CSSCEEEEEECSS---------------------CTTCTT----CEEEEEEETT
T ss_pred EEEEECCCCeE--------EEEECC-CCCCEEEEEecCC---------------------cCcCCC----CCEEEEECCC
Confidence 99999988752 111111 2233334443321 123443 6678999999
Q ss_pred CcccCCCCccC
Q 005352 633 KGCATWPEEKL 643 (701)
Q Consensus 633 ~~~~~W~~~~~ 643 (701)
+.+++|+..+.
T Consensus 380 g~i~iW~~~~~ 390 (393)
T 1erj_A 380 CKARIWKYKKI 390 (393)
T ss_dssp SEEEEEEEEEC
T ss_pred CcEEECccccc
Confidence 99999997654
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-34 Score=297.08 Aligned_cols=284 Identities=23% Similarity=0.339 Sum_probs=235.9
Q ss_pred ecccCcceeee--cCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEE
Q 005352 200 VDKQGEGERVR--LNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLW 277 (701)
Q Consensus 200 ~~~~~~~~~~~--~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iW 277 (701)
..|...+.++. +++..+++++.|+.|+||+..... ..+.+.+|...|.+++|+|++++|++|+.|+.|++|
T Consensus 20 ~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~-------~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vw 92 (312)
T 4ery_A 20 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-------FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW 92 (312)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-------EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred cccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc-------cchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEE
Confidence 35666676655 455678889999999999875432 124577899999999999999999999999999999
Q ss_pred EeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCe
Q 005352 278 QVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEI 357 (701)
Q Consensus 278 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I 357 (701)
|+.+++ .+..+.+|...|
T Consensus 93 d~~~~~--------------------------------------------------------------~~~~~~~~~~~v 110 (312)
T 4ery_A 93 DVSSGK--------------------------------------------------------------CLKTLKGHSNYV 110 (312)
T ss_dssp ETTTCC--------------------------------------------------------------EEEEEECCSSCE
T ss_pred ECCCCc--------------------------------------------------------------EEEEEcCCCCCE
Confidence 997763 344567899999
Q ss_pred EEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEe--
Q 005352 358 LDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV-- 433 (701)
Q Consensus 358 ~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~-- 433 (701)
.+++|+|++ +|++++.|++|++||+++++++..+. |...|.+++|+| ++++|++++.||.|++||+++++.+...
T Consensus 111 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~ 189 (312)
T 4ery_A 111 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLID 189 (312)
T ss_dssp EEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeeEEec
Confidence 999999998 99999999999999999999988886 889999999999 9999999999999999999998877543
Q ss_pred cCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEE
Q 005352 434 DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRI 513 (701)
Q Consensus 434 ~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~i 513 (701)
.+...+..++|+|++++|++++.||.|++||+++.+..... .. .. .........+.+.++.+|++++.|+.|++
T Consensus 190 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~----~~-~~-~~~~~~~~~~~~~~~~~l~sg~~dg~i~v 263 (312)
T 4ery_A 190 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY----TG-HK-NEKYCIFANFSVTGGKWIVSGSEDNLVYI 263 (312)
T ss_dssp SSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEE----CS-SC-CSSSCCCEEEECSSSCEEEECCTTSCEEE
T ss_pred cCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEE----Ee-cC-CceEEEEEEEEeCCCcEEEEECCCCEEEE
Confidence 35568999999999999999999999999999988754321 11 11 11122234555557889999999999999
Q ss_pred EeCCccceeeecccCCCCeEEEEEecCCCEEEEEe--CCCcEEEEeCC
Q 005352 514 LQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAG--EDSNVYMWNCI 559 (701)
Q Consensus 514 wd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs--~Dg~I~iWd~~ 559 (701)
||+.+.........|...|.+++|+|++.+|++++ .|+.|++|+.+
T Consensus 264 wd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 264 WNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp EETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred EECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 99987766666666899999999999999999997 69999999864
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-35 Score=315.10 Aligned_cols=344 Identities=13% Similarity=0.133 Sum_probs=255.4
Q ss_pred cccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeE
Q 005352 220 SKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIY 299 (701)
Q Consensus 220 ~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~ 299 (701)
+.|+.|+||++....... .. ....|...|++++|+|++++|++|+.||.|++|++.+....
T Consensus 42 ~~d~~v~iw~~~~~~~~~----~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~-------------- 102 (416)
T 2pm9_A 42 STDSSLELWSLLAADSEK----PI-ASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNA-------------- 102 (416)
T ss_dssp CCCCCCEEEESSSGGGCS----CS-CCCCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSC--------------
T ss_pred CCCCeEEEEEccCCCCCc----EE-EEEecCCceEEEEECCCCCeEEEEccCCeEEEeeccccccc--------------
Confidence 789999999986543210 11 12258999999999999999999999999999998762100
Q ss_pred EeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecC-C-eEEEEECCCcE
Q 005352 300 FTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN-N-YLLSASIDKTV 377 (701)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~-~-~l~s~s~dg~I 377 (701)
.+.+..+.+|...|.+++|+|+ + +|++++.|+.|
T Consensus 103 --------------------------------------------~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v 138 (416)
T 2pm9_A 103 --------------------------------------------INSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEI 138 (416)
T ss_dssp --------------------------------------------CCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCE
T ss_pred --------------------------------------------ccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeE
Confidence 0234566789999999999998 5 99999999999
Q ss_pred EEEECCCCe------eeeee----cCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecC-------CCcEE
Q 005352 378 RLWRVGNDH------CLRVF----PHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDI-------RQIVT 440 (701)
Q Consensus 378 ~iWd~~~~~------~~~~~----~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~-------~~~i~ 440 (701)
++||+.+++ ....+ .|...|.+++|+|..+.+|++++.||.|++||+++++.+..... ...|.
T Consensus 139 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~ 218 (416)
T 2pm9_A 139 FIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLS 218 (416)
T ss_dssp EBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEE
T ss_pred EEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceE
Confidence 999999886 33333 48899999999993389999999999999999999987765543 67899
Q ss_pred EEEEeeCC-CeEEEEecCC---cEEEEECCCCeeeeeeeEEeecccC-CCCCCeeEEEEecCCCCEEEEEECCCcEEEEe
Q 005352 441 AVCYRPDG-QGGIVGSMMG---DCRFYNVSDNHLELDAEICVHSKKK-APCKRITGFQFLPQDSSKVMVSCADSQVRILQ 515 (701)
Q Consensus 441 ~i~~sp~g-~~l~~gs~dg---~v~i~d~~~~~~~~~~~~~~~~~~~-~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd 515 (701)
+++|+|++ ..+++++.++ .|++||+++..... .... .|...|.+++|+|.++.+|++++.|+.|++||
T Consensus 219 ~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~-------~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd 291 (416)
T 2pm9_A 219 VVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPL-------QTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWN 291 (416)
T ss_dssp EEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCS-------BCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEEC
T ss_pred EEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCc-------EEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEee
Confidence 99999997 6899999998 99999998753211 1123 56788999999997789999999999999999
Q ss_pred CCccceeeecccCCCCeEEEEEecCC-CEEEEEeCCCcEEEEeCCCCCCCCcccc----ccccccccccCCceEEecCCC
Q 005352 516 GPNVIGKYKGLRRSGNQLSACFTSDG-KHIVSAGEDSNVYMWNCIGHEEPAHDQA----KTIRSLERFTTNASIAIPWCG 590 (701)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~l~~s~dg-~~l~sgs~Dg~I~iWd~~~~~~~~~~~~----~~~~~~~~~~~~~~~a~~~~~ 590 (701)
+.+.........|...|.+++|+|++ .+|++++.|+.|++|++.+......... ........+......+ .+
T Consensus 292 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 368 (416)
T 2pm9_A 292 PESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREE---SK 368 (416)
T ss_dssp SSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC-------------------------CC
T ss_pred CCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccc---cc
Confidence 98776666666688999999999999 8999999999999999998764332111 0000000010000000 00
Q ss_pred CCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCCcccCCCCcc
Q 005352 591 LKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEK 642 (701)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~~ 642 (701)
........ .........+..++|+|+ +..+++++.|+.+++|+.+.
T Consensus 369 ~~~~~~~~--~~~~~~~~~~~~~~~s~d----g~~la~~~~d~~v~~w~~~~ 414 (416)
T 2pm9_A 369 EKPSVFHL--QAPTWYGEPSPAAHWAFG----GKLVQITPDGKGVSITNPKI 414 (416)
T ss_dssp SCCCSSCC--CCCSTTCCCSCCCEEETT----TEEECBCTTSSCBCCBCCCC
T ss_pred cccccccc--cCCccccCCccceEEeeC----CeEEEEeCCCCeEEEEEecc
Confidence 00000000 011112334567889997 78888999999999999764
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-35 Score=309.74 Aligned_cols=290 Identities=14% Similarity=0.206 Sum_probs=242.8
Q ss_pred CCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEE
Q 005352 345 KPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIW 422 (701)
Q Consensus 345 ~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iw 422 (701)
+....+.+|.+.|++++|+|++ +|++|+.|++|++||..+++....+. |...|.+++|+| ++.+|++|+.|+.+++|
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp-~g~~lasg~~d~~i~v~ 133 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAP-SGCAIACGGLDNKCSVY 133 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECT-TSSEEEEESTTSEEEEE
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECC-CCCEEEEeeCCCCEEEE
Confidence 5667899999999999999999 99999999999999999988887776 788999999999 99999999999999999
Q ss_pred eCCCC-------cEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEe
Q 005352 423 AVLSC-------HVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFL 495 (701)
Q Consensus 423 d~~~~-------~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~ 495 (701)
++... .......|...|.+++|+|++..|++++.|++|++||+.+++.... ...|...|.++.++
T Consensus 134 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~--------~~~h~~~v~~~~~~ 205 (354)
T 2pbi_B 134 PLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQS--------FHGHGADVLCLDLA 205 (354)
T ss_dssp ECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEE--------EECCSSCEEEEEEC
T ss_pred EEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEE--------EcCCCCCeEEEEEE
Confidence 98643 2335567889999999999999999999999999999998765432 23456789999998
Q ss_pred cC-CCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCCCCccccccccc
Q 005352 496 PQ-DSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRS 574 (701)
Q Consensus 496 p~-~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~ 574 (701)
|. ++.+|++++.|+.|++||+++.........|...|.+++|+|++.+|++|+.|+.|++||+.++.... .
T Consensus 206 ~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~--------~ 277 (354)
T 2pbi_B 206 PSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVA--------I 277 (354)
T ss_dssp CCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE--------E
T ss_pred eCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEE--------E
Confidence 85 46899999999999999998776665556689999999999999999999999999999998754110 0
Q ss_pred cccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCCcccCCCCccCCCCcccccccc
Q 005352 575 LERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLSSASA 654 (701)
Q Consensus 575 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~~~~ 654 (701)
+. . ......+..++|+|+ +..+++++.|+.+++|+..+...+..+.+|
T Consensus 278 ~~-------------~-------------~~~~~~~~~~~~s~~----g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h-- 325 (354)
T 2pbi_B 278 YS-------------K-------------ESIIFGASSVDFSLS----GRLLFAGYNDYTINVWDVLKGSRVSILFGH-- 325 (354)
T ss_dssp EC-------------C-------------TTCCSCEEEEEECTT----SSEEEEEETTSCEEEEETTTCSEEEEECCC--
T ss_pred Ec-------------C-------------CCcccceeEEEEeCC----CCEEEEEECCCcEEEEECCCCceEEEEECC--
Confidence 00 0 000113445778886 678889999999999999888777666666
Q ss_pred chhhhhhhhhcccccccccCCCccEEEEecCCCeEeEEe
Q 005352 655 LHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFL 693 (701)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~g~~ivTgg~DG~Irvw~ 693 (701)
.+.|.+++++++ |.+|+||+.||+||+|.
T Consensus 326 ---------~~~v~~l~~spd-g~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 326 ---------ENRVSTLRVSPD-GTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp ---------SSCEEEEEECTT-SSCEEEEETTSEEEEEC
T ss_pred ---------CCcEEEEEECCC-CCEEEEEcCCCCEEecC
Confidence 467888999999 99999999999999994
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-34 Score=308.79 Aligned_cols=296 Identities=20% Similarity=0.320 Sum_probs=233.0
Q ss_pred cccCcceeeec--CccccccccccceEEEEEccCccchhhhccc------------CceeccCCCcEEEEEEccCCCEEE
Q 005352 201 DKQGEGERVRL--NEEDAMFCSKVQRVKVYHCKKRSKELSALYK------------GQEIQAHDGSILTMKFSPDGQYLA 266 (701)
Q Consensus 201 ~~~~~~~~~~~--~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~------------~~~l~~H~~~I~~l~fspdg~~La 266 (701)
.|...+.++.+ ++..+++++ ++.++||+........ .+.. ......+...|.+++|+|+|++||
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~ 139 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVA-RLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA 139 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEE-EECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEE-EecCccccccccccccccccCCCceeEEEEEECCCCCEEE
Confidence 46666665554 555666654 7899999986433211 0000 000112344699999999999999
Q ss_pred EEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCC
Q 005352 267 SAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKP 346 (701)
Q Consensus 267 sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (701)
+|+.|+.|+|||+.+++ .
T Consensus 140 s~~~d~~i~iwd~~~~~--------------------------------------------------------------~ 157 (393)
T 1erj_A 140 TGAEDRLIRIWDIENRK--------------------------------------------------------------I 157 (393)
T ss_dssp EEETTSCEEEEETTTTE--------------------------------------------------------------E
T ss_pred EEcCCCeEEEEECCCCc--------------------------------------------------------------E
Confidence 99999999999997764 2
Q ss_pred eEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCC
Q 005352 347 LHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVL 425 (701)
Q Consensus 347 ~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~ 425 (701)
+..+.+|...|.+++|+|++ +|++++.|++|++||++++++...+.+...+.+++|+|.++++|++|+.|+.|++||++
T Consensus 158 ~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~ 237 (393)
T 1erj_A 158 VMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSE 237 (393)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETT
T ss_pred EEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECC
Confidence 34567899999999999999 99999999999999999999999999889999999999788999999999999999999
Q ss_pred CCcEEEEe--------cCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeee----EEeecccCCCCCCeeEEE
Q 005352 426 SCHVVDWV--------DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAE----ICVHSKKKAPCKRITGFQ 493 (701)
Q Consensus 426 ~~~~~~~~--------~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~----~~~~~~~~~~~~~i~~l~ 493 (701)
+++.+... .|...|++++|+|++++|++|+.||.|++||+++........ .........|...|.+++
T Consensus 238 ~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 317 (393)
T 1erj_A 238 TGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVA 317 (393)
T ss_dssp TCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEE
T ss_pred CCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEE
Confidence 98876443 577899999999999999999999999999998654321110 001111234667899999
Q ss_pred EecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEec------CCCEEEEEeCCCcEEEEeCCCC
Q 005352 494 FLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTS------DGKHIVSAGEDSNVYMWNCIGH 561 (701)
Q Consensus 494 ~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~------dg~~l~sgs~Dg~I~iWd~~~~ 561 (701)
|+| ++.+|++++.|+.|++||..+.........|...|.+++|++ ++++|+||+.||.|+||++...
T Consensus 318 ~~~-~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 318 TTQ-NDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp ECG-GGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred ECC-CCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 999 788999999999999999987776666666999999999986 6889999999999999998654
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-34 Score=301.96 Aligned_cols=294 Identities=18% Similarity=0.197 Sum_probs=218.2
Q ss_pred ceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEE
Q 005352 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (701)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (701)
+.+++|.++|++++|+|+ +||+|+.|++|++||+..+..
T Consensus 8 ~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~--------------------------------------- 46 (330)
T 2hes_X 8 KSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDF--------------------------------------- 46 (330)
T ss_dssp EEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCC---------------------------------------
T ss_pred eeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCe---------------------------------------
Confidence 567899999999999987 999999999999999876421
Q ss_pred eeecCCccEEEcCCccccccCCCeEEE-cC-CccCeEEEEEecCC-eEEEEECCCcEEEEECCC-------Ceeeeeec-
Q 005352 324 LRRTSESACVVFPPKVFRILEKPLHEF-HG-HSGEILDLSWSKNN-YLLSASIDKTVRLWRVGN-------DHCLRVFP- 392 (701)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~-------~~~~~~~~- 392 (701)
.....+ .+ |...|.+++|+|++ +|++++.|++|+|||+.. .+++..+.
T Consensus 47 ---------------------~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~ 105 (330)
T 2hes_X 47 ---------------------TLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEG 105 (330)
T ss_dssp ---------------------EEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC-
T ss_pred ---------------------EEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcC
Confidence 111223 23 99999999999999 999999999999999853 34555554
Q ss_pred CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCC----cEE-EEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCC
Q 005352 393 HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSC----HVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSD 467 (701)
Q Consensus 393 h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~----~~~-~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~ 467 (701)
|...|++++|+| ++++|++|+.|++|++||++.. +.+ .+..|...|++++|+|++++|++++.|+.|++||+.+
T Consensus 106 h~~~V~~v~~sp-~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~ 184 (330)
T 2hes_X 106 HENEVKGVAWSN-DGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYD 184 (330)
T ss_dssp ---CEEEEEECT-TSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEET
T ss_pred CCCcEEEEEECC-CCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence 999999999999 9999999999999999999532 333 4556889999999999999999999999999999876
Q ss_pred CeeeeeeeEEeecccCCCCCCeeEEEEecCC-CCEEEEEECCCcEEEEeCCcc--------ceeeecc-cCCCCeEEEEE
Q 005352 468 NHLELDAEICVHSKKKAPCKRITGFQFLPQD-SSKVMVSCADSQVRILQGPNV--------IGKYKGL-RRSGNQLSACF 537 (701)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~-~~~l~~~s~dg~I~iwd~~~~--------~~~~~~~-~~~~~v~~l~~ 537 (701)
...... .....|...|.+++|+|+. +..|++++.|++|++||+... ....... .|...|.+++|
T Consensus 185 ~~~~~~------~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~ 258 (330)
T 2hes_X 185 DDWECV------AVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAW 258 (330)
T ss_dssp TEEEEE------EEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEE
T ss_pred CCeeEE------EEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEE
Confidence 532211 1234567889999999943 568999999999999998643 1122222 27889999999
Q ss_pred ecCCCEEEEEeCCCcEEEEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCC-CCCccccC
Q 005352 538 TSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDD-SPENLAFA 616 (701)
Q Consensus 538 s~dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~s 616 (701)
++++ +|++++.||.|+||+..+++. +..... .. .+.. .+..++|+
T Consensus 259 s~~~-~l~s~~~dg~v~iw~~~~~~~------~~~~~~------------~~---------------~h~~~~v~~v~~~ 304 (330)
T 2hes_X 259 GFNG-LIASVGADGVLAVYEEVDGEW------KVFAKR------------AL---------------CHGVYEINVVKWL 304 (330)
T ss_dssp CTTS-CEEEEETTSCEEEEEEETTEE------EEEEEE------------SC---------------TTTTSCEEEEEEC
T ss_pred cCCC-EEEEEeCCCEEEEEEcCCCce------EEEecc------------cc---------------ccccceEEEEEEe
Confidence 9765 899999999999999765420 000000 00 0011 34556677
Q ss_pred CCccccCccccccCCCCcccCCCCcc
Q 005352 617 PARFSLGQEYVFESFPKGCATWPEEK 642 (701)
Q Consensus 617 p~~~~~~~~~~~~s~d~~~~~W~~~~ 642 (701)
|. ..+..+++++.|+.+++|+.++
T Consensus 305 ~~--~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 305 EL--NGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp -------CCEEEEETTSEEEEEEC--
T ss_pred cC--CCceEEEEecCCCcEEEEEecc
Confidence 72 0156788999999999998654
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-33 Score=298.99 Aligned_cols=298 Identities=20% Similarity=0.266 Sum_probs=240.3
Q ss_pred ceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEE
Q 005352 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (701)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (701)
..+.+|.+.|++|+|+|++++|++|+.||.|++||+.+++
T Consensus 26 ~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~---------------------------------------- 65 (369)
T 3zwl_B 26 IKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGE---------------------------------------- 65 (369)
T ss_dssp EEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCC----------------------------------------
T ss_pred EEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCch----------------------------------------
Confidence 4678899999999999999999999999999999987764
Q ss_pred eeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEE
Q 005352 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHF 402 (701)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f 402 (701)
.+..+.+|...|.+++|+|++ +|++++.|+.|++||+.+++++..+.+...|.+++|
T Consensus 66 ----------------------~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~ 123 (369)
T 3zwl_B 66 ----------------------RLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEF 123 (369)
T ss_dssp ----------------------EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSCEEEEEE
T ss_pred ----------------------hhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCeEEEEE
Confidence 345567899999999999998 999999999999999999999999999999999999
Q ss_pred eeCCCCEEEEEEcC-----CcEEEEeCCCCcE------------EEEecCCC--cEEEEEEeeCCCeEEEEecCCcEEEE
Q 005352 403 NPVDDNYFISGSID-----GKVRIWAVLSCHV------------VDWVDIRQ--IVTAVCYRPDGQGGIVGSMMGDCRFY 463 (701)
Q Consensus 403 ~p~~~~~l~sgs~d-----g~v~iwd~~~~~~------------~~~~~~~~--~i~~i~~sp~g~~l~~gs~dg~v~i~ 463 (701)
+| ++++|++++.+ +.|++||+..... .....+.. .+.+++|+|+++.|++++.+|.|++|
T Consensus 124 ~~-~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~ 202 (369)
T 3zwl_B 124 SP-CGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKY 202 (369)
T ss_dssp CT-TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEE
T ss_pred cc-CCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEE
Confidence 99 99999999998 9999999976531 22334444 89999999999999999999999999
Q ss_pred ECCC-CeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCC
Q 005352 464 NVSD-NHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGK 542 (701)
Q Consensus 464 d~~~-~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~ 542 (701)
|+++ ...... ...+...|.+++|+| ++.+|++++.|+.|++||+.+........ +...+..++|+|+++
T Consensus 203 d~~~~~~~~~~--------~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~ 272 (369)
T 3zwl_B 203 DVSNNYEYVDS--------IDLHEKSISDMQFSP-DLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKE 272 (369)
T ss_dssp ETTTTTEEEEE--------EECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSS
T ss_pred ECCCCcEeEEE--------EecCCCceeEEEECC-CCCEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecCCCc
Confidence 9998 333221 223567899999999 78999999999999999998765544433 778899999999999
Q ss_pred EEEEEeCCCcEEEEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCcccc
Q 005352 543 HIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSL 622 (701)
Q Consensus 543 ~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~ 622 (701)
++++++.++.+.+|......
T Consensus 273 ~l~~~~~~~~~~~~~~~~~~------------------------------------------------------------ 292 (369)
T 3zwl_B 273 FIILGGGQEAKDVTTTSANE------------------------------------------------------------ 292 (369)
T ss_dssp EEEEEECCC-----------------------------------------------------------------------
T ss_pred eEEEeecCCCceEEEEecCC------------------------------------------------------------
Confidence 99999999877776643322
Q ss_pred CccccccCCCCcccCCCCccCCCCccccccccchhhhhhhhhcccccccccCCCccEEEEecCCCeEeEEee
Q 005352 623 GQEYVFESFPKGCATWPEEKLPALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFLN 694 (701)
Q Consensus 623 ~~~~~~~s~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivTgg~DG~Irvw~~ 694 (701)
....+++|+......+..+.+| ...+.+++++++ +.+|+||+.||.|++|+.
T Consensus 293 --------~~~~i~~~d~~~~~~~~~~~~~-----------~~~v~~~~~s~~-~~~l~s~~~dg~v~iw~~ 344 (369)
T 3zwl_B 293 --------GKFEARFYHKIFEEEIGRVQGH-----------FGPLNTVAISPQ-GTSYASGGEDGFIRLHHF 344 (369)
T ss_dssp ----------CEEEEEETTTCCEEEEEECC-----------SSCEEEEEECTT-SSEEEEEETTSEEEEEEE
T ss_pred --------CcceeEEEecCCCcchhheecc-----------cCcEEEEEECCC-CCEEEEEcCCCeEEEEEC
Confidence 1123455665555555555444 356778888888 999999999999999984
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-33 Score=291.18 Aligned_cols=251 Identities=18% Similarity=0.269 Sum_probs=207.3
Q ss_pred eeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEe
Q 005352 245 EIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSL 324 (701)
Q Consensus 245 ~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (701)
.+.+|.+.|++++|+|+|++||||+.|++|+|||+.....
T Consensus 4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~---------------------------------------- 43 (297)
T 2pm7_B 4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH---------------------------------------- 43 (297)
T ss_dssp ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB----------------------------------------
T ss_pred eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc----------------------------------------
Confidence 4678999999999999999999999999999999864310
Q ss_pred eecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecC--C-eEEEEECCCcEEEEECCCCe--eeeeec-CCCCeE
Q 005352 325 RRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN--N-YLLSASIDKTVRLWRVGNDH--CLRVFP-HSNYVT 398 (701)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~--~-~l~s~s~dg~I~iWd~~~~~--~~~~~~-h~~~V~ 398 (701)
+.+..+.+|.+.|.+++|+++ + +|++++.|++|++||+.+++ .+..+. |...|.
T Consensus 44 --------------------~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~ 103 (297)
T 2pm7_B 44 --------------------KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVN 103 (297)
T ss_dssp --------------------CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEE
T ss_pred --------------------EEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCcee
Confidence 345678899999999999863 5 99999999999999998874 444444 889999
Q ss_pred EEEEeeCC--CCEEEEEEcCCcEEEEeCCCCc---EEEEecCCCcEEEEEEeeC-------------CCeEEEEecCCcE
Q 005352 399 CVHFNPVD--DNYFISGSIDGKVRIWAVLSCH---VVDWVDIRQIVTAVCYRPD-------------GQGGIVGSMMGDC 460 (701)
Q Consensus 399 ~l~f~p~~--~~~l~sgs~dg~v~iwd~~~~~---~~~~~~~~~~i~~i~~sp~-------------g~~l~~gs~dg~v 460 (701)
+++|+| + +.+|++++.|+.|++||++++. ......|...|.+++|+|+ +++|++|+.|+.|
T Consensus 104 ~v~~~p-~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v 182 (297)
T 2pm7_B 104 SVQWAP-HEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLV 182 (297)
T ss_dssp EEEECC-GGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCE
T ss_pred EEEeCc-CCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcE
Confidence 999999 5 7899999999999999998763 3355678899999999997 5799999999999
Q ss_pred EEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCC--CCEEEEEECCCcEEEEeCCccc-----eeeecccCCCCeE
Q 005352 461 RFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQD--SSKVMVSCADSQVRILQGPNVI-----GKYKGLRRSGNQL 533 (701)
Q Consensus 461 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~--~~~l~~~s~dg~I~iwd~~~~~-----~~~~~~~~~~~v~ 533 (701)
++||+++....... ......|...|.+++|+|+. +.+|++++.|++|+|||..... ..+....|...|.
T Consensus 183 ~lwd~~~~~~~~~~----~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~ 258 (297)
T 2pm7_B 183 KIWKYNSDAQTYVL----ESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLW 258 (297)
T ss_dssp EEEEEETTTTEEEE----EEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEE
T ss_pred EEEEEcCCCceEEE----EEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEE
Confidence 99999875422111 11234577889999999953 5899999999999999987532 1222234678899
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEeCCC
Q 005352 534 SACFTSDGKHIVSAGEDSNVYMWNCIG 560 (701)
Q Consensus 534 ~l~~s~dg~~l~sgs~Dg~I~iWd~~~ 560 (701)
+++|+|+|++|++++.|+.|+||+...
T Consensus 259 ~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 259 RASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp EEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred EEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 999999999999999999999999763
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-33 Score=324.13 Aligned_cols=286 Identities=20% Similarity=0.342 Sum_probs=229.8
Q ss_pred eeecccCcceeeecCc---cccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcE
Q 005352 198 CVVDKQGEGERVRLNE---EDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVV 274 (701)
Q Consensus 198 ~~~~~~~~~~~~~~~~---~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I 274 (701)
.+..|.+.+.++.+.. +.+++|+.|+.|+||++........ ...+.+.+|...|.+++|+|+|++|+||+.||+|
T Consensus 377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~--~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v 454 (694)
T 3dm0_A 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYG--VAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGEL 454 (694)
T ss_dssp EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSC--EEEEEEECCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccc--cccceecCCCCcEEEEEECCCCCEEEEEeCCCcE
Confidence 3456888888887653 3578899999999999865432211 1224678999999999999999999999999999
Q ss_pred EEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCc
Q 005352 275 RLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHS 354 (701)
Q Consensus 275 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 354 (701)
+|||+.++.. +..+.+|.
T Consensus 455 ~vwd~~~~~~--------------------------------------------------------------~~~~~~h~ 472 (694)
T 3dm0_A 455 RLWDLAAGVS--------------------------------------------------------------TRRFVGHT 472 (694)
T ss_dssp EEEETTTTEE--------------------------------------------------------------EEEEECCS
T ss_pred EEEECCCCcc--------------------------------------------------------------eeEEeCCC
Confidence 9999987642 34567899
Q ss_pred cCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeee----cCCCCeEEEEEeeCCC--CEEEEEEcCCcEEEEeCCCC
Q 005352 355 GEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVF----PHSNYVTCVHFNPVDD--NYFISGSIDGKVRIWAVLSC 427 (701)
Q Consensus 355 ~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~----~h~~~V~~l~f~p~~~--~~l~sgs~dg~v~iwd~~~~ 427 (701)
..|.+++|+|++ +|++++.|++|++||+......... .|...|.+++|+| ++ ..|++++.|+.|++||++++
T Consensus 473 ~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~l~s~s~d~~v~vwd~~~~ 551 (694)
T 3dm0_A 473 KDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSP-NTLQPTIVSASWDKTVKVWNLSNC 551 (694)
T ss_dssp SCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECS-CSSSCEEEEEETTSCEEEEETTTC
T ss_pred CCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeC-CCCcceEEEEeCCCeEEEEECCCC
Confidence 999999999999 9999999999999998765544332 3888999999999 54 68999999999999999998
Q ss_pred cEEE-EecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEE
Q 005352 428 HVVD-WVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSC 506 (701)
Q Consensus 428 ~~~~-~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s 506 (701)
+... ...|...|++++|+|++++|++|+.||.|++||+.+++..... .+...|.+++|+| ++.++++ +
T Consensus 552 ~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~---------~~~~~v~~~~~sp-~~~~l~~-~ 620 (694)
T 3dm0_A 552 KLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSL---------EANSVIHALCFSP-NRYWLCA-A 620 (694)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECC---------BCSSCEEEEEECS-SSSEEEE-E
T ss_pred cEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEe---------cCCCcEEEEEEcC-CCcEEEE-E
Confidence 8774 4568899999999999999999999999999999988754321 1235799999999 5665555 4
Q ss_pred CCCcEEEEeCCccceeeecc-------------------cCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 005352 507 ADSQVRILQGPNVIGKYKGL-------------------RRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCI 559 (701)
Q Consensus 507 ~dg~I~iwd~~~~~~~~~~~-------------------~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~ 559 (701)
.++.|+|||+.+........ .+...+++++|+|+|++|++|+.||.|+||++.
T Consensus 621 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 621 TEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp ETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred cCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 56679999997644322211 112247899999999999999999999999985
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-33 Score=292.91 Aligned_cols=250 Identities=21% Similarity=0.336 Sum_probs=209.5
Q ss_pred ceeccCCCcEEEEEEccC-CCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeE
Q 005352 244 QEIQAHDGSILTMKFSPD-GQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (701)
Q Consensus 244 ~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (701)
.+|+||++.|++|+|+|+ +++|||||.||+|+|||+.+.+...
T Consensus 32 ~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~------------------------------------ 75 (340)
T 4aow_A 32 GTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNY------------------------------------ 75 (340)
T ss_dssp EEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCS------------------------------------
T ss_pred EEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCccc------------------------------------
Confidence 468999999999999997 6899999999999999997654110
Q ss_pred EeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEE
Q 005352 323 SLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCV 400 (701)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l 400 (701)
..+...+.+|...|.+++|+|++ +|++++.|+.|++|+........... +...+..+
T Consensus 76 ---------------------~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~ 134 (340)
T 4aow_A 76 ---------------------GIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSV 134 (340)
T ss_dssp ---------------------EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEE
T ss_pred ---------------------ceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEE
Confidence 02456778999999999999999 99999999999999999988777765 77788899
Q ss_pred EEeeCCCCEEEEEEcCCcEEEEeCCCCcEE--EEecCCCcEEEEEEeeCC--CeEEEEecCCcEEEEECCCCeeeeeeeE
Q 005352 401 HFNPVDDNYFISGSIDGKVRIWAVLSCHVV--DWVDIRQIVTAVCYRPDG--QGGIVGSMMGDCRFYNVSDNHLELDAEI 476 (701)
Q Consensus 401 ~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~--~~~~~~~~i~~i~~sp~g--~~l~~gs~dg~v~i~d~~~~~~~~~~~~ 476 (701)
.+++ ++++|++++.|+.+++||+...... ....+...+..++|++++ ..+++++.|+.|++||+++.+....
T Consensus 135 ~~~~-~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~--- 210 (340)
T 4aow_A 135 AFSS-DNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTN--- 210 (340)
T ss_dssp EECT-TSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEE---
T ss_pred EEee-cCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeE---
Confidence 9998 8999999999999999999876554 334577889999998865 5678899999999999998875432
Q ss_pred EeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 005352 477 CVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMW 556 (701)
Q Consensus 477 ~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iW 556 (701)
...|...|++++|+| ++.+|++++.|+.|++||+.+........ +...+.+++|+|++.++ +++.|+.|++|
T Consensus 211 -----~~~h~~~v~~~~~s~-~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~-~~~~d~~i~iw 282 (340)
T 4aow_A 211 -----HIGHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNEGKHLYTLD-GGDIINALCFSPNRYWL-CAATGPSIKIW 282 (340)
T ss_dssp -----ECCCSSCEEEEEECT-TSSEEEEEETTCEEEEEETTTTEEEEEEE-CSSCEEEEEECSSSSEE-EEEETTEEEEE
T ss_pred -----ecCCCCcEEEEEECC-CCCEEEEEeCCCeEEEEEeccCceeeeec-CCceEEeeecCCCCcee-eccCCCEEEEE
Confidence 234667899999999 78999999999999999998766555443 55789999999987654 55679999999
Q ss_pred eCCCCC
Q 005352 557 NCIGHE 562 (701)
Q Consensus 557 d~~~~~ 562 (701)
|++++.
T Consensus 283 d~~~~~ 288 (340)
T 4aow_A 283 DLEGKI 288 (340)
T ss_dssp ETTTTE
T ss_pred ECCCCe
Confidence 987654
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-33 Score=299.62 Aligned_cols=252 Identities=15% Similarity=0.240 Sum_probs=209.3
Q ss_pred eccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEee
Q 005352 246 IQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLR 325 (701)
Q Consensus 246 l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (701)
+..|.++|++++|+|++++||+|+.|+.|++||+.+++.
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~----------------------------------------- 42 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW----------------------------------------- 42 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEE-----------------------------------------
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcE-----------------------------------------
Confidence 456999999999999999999999999999999987641
Q ss_pred ecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeee---cCCCCeEEEE
Q 005352 326 RTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVF---PHSNYVTCVH 401 (701)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~---~h~~~V~~l~ 401 (701)
+.+..+.+|...|.+++|+|++ +|++++.|+.|++||+.+++....+ .|...|.+++
T Consensus 43 -------------------~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~ 103 (372)
T 1k8k_C 43 -------------------VQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVR 103 (372)
T ss_dssp -------------------EEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEE
T ss_pred -------------------EeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEE
Confidence 1345667899999999999999 9999999999999999998755543 4889999999
Q ss_pred EeeCCCCEEEEEEcCCcEEEEeCCCCcE---E-EE-ecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeee---
Q 005352 402 FNPVDDNYFISGSIDGKVRIWAVLSCHV---V-DW-VDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELD--- 473 (701)
Q Consensus 402 f~p~~~~~l~sgs~dg~v~iwd~~~~~~---~-~~-~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~--- 473 (701)
|+| ++++|++++.|+.|++||+..+.. . .. ..|...|++++|+|++++|++++.||.|++||++.......
T Consensus 104 ~~~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~ 182 (372)
T 1k8k_C 104 WAP-NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAP 182 (372)
T ss_dssp ECT-TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCC
T ss_pred ECC-CCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccc
Confidence 999 999999999999999999988762 2 22 35688999999999999999999999999999752210000
Q ss_pred -------eeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEE
Q 005352 474 -------AEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVS 546 (701)
Q Consensus 474 -------~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~s 546 (701)
...........+...|.+++|+| ++.+|++++.|+.|++||+.+.........|...|.+++|+|++.+|++
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 261 (372)
T 1k8k_C 183 TPWGSKMPFGELMFESSSSCGWVHGVCFSA-NGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAA 261 (372)
T ss_dssp BTTBSCCCTTCEEEECCCCSSCEEEEEECS-SSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEE
T ss_pred cccccccchhhheEecCCCCCeEEEEEECC-CCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEE
Confidence 00001111235667899999999 7889999999999999999877666666668889999999999998888
Q ss_pred EeCCCcEEEEeCCC
Q 005352 547 AGEDSNVYMWNCIG 560 (701)
Q Consensus 547 gs~Dg~I~iWd~~~ 560 (701)
| .|+.|++|++.+
T Consensus 262 ~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 262 G-HDCFPVLFTYDS 274 (372)
T ss_dssp E-TTSSCEEEEEET
T ss_pred E-eCCeEEEEEccC
Confidence 8 899999999987
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-33 Score=292.22 Aligned_cols=289 Identities=19% Similarity=0.364 Sum_probs=232.4
Q ss_pred eecccCcceeeecCc---cccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEE
Q 005352 199 VVDKQGEGERVRLNE---EDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVR 275 (701)
Q Consensus 199 ~~~~~~~~~~~~~~~---~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~ 275 (701)
+..|.+.+.++++++ +.+++|+.|++|+||++....... ....+.+++|...|.+++|+|+|++|++|+.|+.|+
T Consensus 34 L~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~--~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~ 111 (340)
T 4aow_A 34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNY--GIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLR 111 (340)
T ss_dssp ECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCS--EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred ECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCccc--ceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccce
Confidence 346888888887763 457789999999999987543322 223356889999999999999999999999999999
Q ss_pred EEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCcc
Q 005352 276 LWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSG 355 (701)
Q Consensus 276 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 355 (701)
+|+....... .....+..
T Consensus 112 ~~~~~~~~~~--------------------------------------------------------------~~~~~~~~ 129 (340)
T 4aow_A 112 LWDLTTGTTT--------------------------------------------------------------RRFVGHTK 129 (340)
T ss_dssp EEETTTTEEE--------------------------------------------------------------EEEECCSS
T ss_pred EEeeccccee--------------------------------------------------------------eeecCCCC
Confidence 9998776422 22345667
Q ss_pred CeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeee--cCCCCeEEEEEeeCC-CCEEEEEEcCCcEEEEeCCCCcEEE
Q 005352 356 EILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVF--PHSNYVTCVHFNPVD-DNYFISGSIDGKVRIWAVLSCHVVD 431 (701)
Q Consensus 356 ~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~--~h~~~V~~l~f~p~~-~~~l~sgs~dg~v~iwd~~~~~~~~ 431 (701)
.+..+.+++++ +|++++.|+.+++||+......... .|...+.+++|++.. ..++++++.|+.|++||+++++.+.
T Consensus 130 ~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~ 209 (340)
T 4aow_A 130 DVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKT 209 (340)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEE
T ss_pred ceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceee
Confidence 78888999988 9999999999999999877654433 388999999998732 3578899999999999999998774
Q ss_pred -EecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCc
Q 005352 432 -WVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQ 510 (701)
Q Consensus 432 -~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~ 510 (701)
...|...|++++|+|++++|++|+.||.|++||+++.+...... +...+..+.|+| + ..+++++.|+.
T Consensus 210 ~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~---------~~~~v~~~~~~~-~-~~~~~~~~d~~ 278 (340)
T 4aow_A 210 NHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLD---------GGDIINALCFSP-N-RYWLCAATGPS 278 (340)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEE---------CSSCEEEEEECS-S-SSEEEEEETTE
T ss_pred EecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeec---------CCceEEeeecCC-C-CceeeccCCCE
Confidence 45688999999999999999999999999999999877543211 235799999998 3 45667788999
Q ss_pred EEEEeCCccceeee---------cccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 511 VRILQGPNVIGKYK---------GLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 511 I~iwd~~~~~~~~~---------~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
|++||+........ ...|...|++++|+|+|++|++|+.||.|+|||+.+|.
T Consensus 279 i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 279 IKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred EEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 99999875433222 23478899999999999999999999999999999875
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-34 Score=307.81 Aligned_cols=330 Identities=15% Similarity=0.140 Sum_probs=252.7
Q ss_pred ceeeecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeee
Q 005352 206 GERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERL 285 (701)
Q Consensus 206 ~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~ 285 (701)
..++++++..+++++.|+.|++|+....... ..+..| ..+....|+|++++||+|+.||.|++||+.+++.
T Consensus 61 ~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~-------~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~- 131 (420)
T 3vl1_A 61 GNTFEKVGSHLYKARLDGHDFLFNTIIRDGS-------KMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQ- 131 (420)
T ss_dssp TCEEEEEETTEEEEEETTEEEEEECCSEETT-------TTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEE-
T ss_pred ceeeeecCCeEEEEEcCCcEEEEEeccccee-------eEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcce-
Confidence 3567788889999999999999997643321 223445 4555667899999999999999999999876542
Q ss_pred eeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecC
Q 005352 286 TEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN 365 (701)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~ 365 (701)
...+.+|...|.+++|+|+
T Consensus 132 -------------------------------------------------------------~~~~~~h~~~v~~~~~~~~ 150 (420)
T 3vl1_A 132 -------------------------------------------------------------REIDQAHVSEITKLKFFPS 150 (420)
T ss_dssp -------------------------------------------------------------EEETTSSSSCEEEEEECTT
T ss_pred -------------------------------------------------------------eeecccccCccEEEEECCC
Confidence 2334679999999999999
Q ss_pred C-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEec----CCCcE
Q 005352 366 N-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVD----IRQIV 439 (701)
Q Consensus 366 ~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~----~~~~i 439 (701)
+ +|++++.|++|++||+.+++++..+. |...|++++|+| ++++|++++.|+.|++||+++++.+..+. +...+
T Consensus 151 ~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v 229 (420)
T 3vl1_A 151 GEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIID-RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGV 229 (420)
T ss_dssp SSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCE
T ss_pred CCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcC-CCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCc
Confidence 9 99999999999999999999888886 999999999999 99999999999999999999998776553 33445
Q ss_pred EEEE---------------------EeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCC
Q 005352 440 TAVC---------------------YRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQD 498 (701)
Q Consensus 440 ~~i~---------------------~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~ 498 (701)
.+++ |+|++++|++|+.||.|++||+++...... ....+...|.+++|+|++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~-------~~~~~~~~v~~~~~~~~~ 302 (420)
T 3vl1_A 230 NSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQ-------LPSKFTCSCNSLTVDGNN 302 (420)
T ss_dssp EEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEE-------ECCTTSSCEEEEEECSSC
T ss_pred cEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEE-------cccccCCCceeEEEeCCC
Confidence 5554 578899999999999999999998764332 123466789999999954
Q ss_pred CCEEEEEECCCcEEEEeCCccce-eeeccc-CCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCCCCccccccccccc
Q 005352 499 SSKVMVSCADSQVRILQGPNVIG-KYKGLR-RSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLE 576 (701)
Q Consensus 499 ~~~l~~~s~dg~I~iwd~~~~~~-~~~~~~-~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~ 576 (701)
..+|++++.|+.|++||+.+... ...... +...|.++. .+++++|++++.||.|++|++..+..+.....
T Consensus 303 ~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~------- 374 (420)
T 3vl1_A 303 ANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVY-FAAGALFVSSGFDTSIKLDIISDPESERPAIE------- 374 (420)
T ss_dssp TTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEE-EETTEEEEEETTTEEEEEEEECCTTCCSCEEC-------
T ss_pred CCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEE-eCCCCEEEEecCCccEEEEeccCCCCCcccee-------
Confidence 44999999999999999986543 222222 566777775 46888999999999999999988653221100
Q ss_pred cccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCCcccCCCCcc
Q 005352 577 RFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEK 642 (701)
Q Consensus 577 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~~ 642 (701)
+. ...........+..++|+|++...+ .+++.+.++.+.+|+.+.
T Consensus 375 -~~-------------------~~~~~~~~~~~v~~~~~s~~~~~~g-~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 375 -FE-------------------TPTFLVSNDDAVSQFCYVSDDESNG-EVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp -TT-------------------SCEEECCSSCCCCEEEEECCSSSSC-EEEEEETTTEEEEEESCC
T ss_pred -cc-------------------CccEEccCCcceEEEEEccCCCCcc-eEEEEcCCceEEEEeccC
Confidence 00 1111123345677889999844333 455667888899998754
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-32 Score=287.53 Aligned_cols=283 Identities=17% Similarity=0.262 Sum_probs=237.8
Q ss_pred cccCcceeeec--CccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEE
Q 005352 201 DKQGEGERVRL--NEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQ 278 (701)
Q Consensus 201 ~~~~~~~~~~~--~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd 278 (701)
.|...+.++.+ ++..+++++ ++.|+||++....... ........+|...|.+++|+|++++|++++.||.|++||
T Consensus 49 ~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d 125 (337)
T 1gxr_A 49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS--PVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWD 125 (337)
T ss_dssp CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS--CSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEE
T ss_pred cCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCcee--eeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEE
Confidence 45555655544 455666677 9999999986543211 111111227999999999999999999999999999999
Q ss_pred eecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeE
Q 005352 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEIL 358 (701)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~ 358 (701)
+.+++. .....+.+|...|.
T Consensus 126 ~~~~~~------------------------------------------------------------~~~~~~~~~~~~i~ 145 (337)
T 1gxr_A 126 LAAPTP------------------------------------------------------------RIKAELTSSAPACY 145 (337)
T ss_dssp CCCC--------------------------------------------------------------EEEEEEECSSSCEE
T ss_pred CCCCCc------------------------------------------------------------ceeeecccCCCceE
Confidence 977541 12345667899999
Q ss_pred EEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCC
Q 005352 359 DLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIR 436 (701)
Q Consensus 359 ~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~ 436 (701)
+++|+|++ +|++++.|+.|++||+.+++.+..+. |...|.+++|+| ++++|++++.||.|++||+++++.+....+.
T Consensus 146 ~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~ 224 (337)
T 1gxr_A 146 ALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISN-DGTKLWTGGLDNTVRSWDLREGRQLQQHDFT 224 (337)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECS
T ss_pred EEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECC-CCCEEEEEecCCcEEEEECCCCceEeeecCC
Confidence 99999998 99999999999999999999988887 889999999999 9999999999999999999999998888889
Q ss_pred CcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeC
Q 005352 437 QIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQG 516 (701)
Q Consensus 437 ~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~ 516 (701)
..+.+++|+|+++.+++++.++.|++||+.+..... ...+...|.+++|+| ++.+|++++.|+.|++||+
T Consensus 225 ~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~---------~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~~~ 294 (337)
T 1gxr_A 225 SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ---------LHLHESCVLSLKFAY-CGKWFVSTGKDNLLNAWRT 294 (337)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE---------ECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEET
T ss_pred CceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEE---------EcCCccceeEEEECC-CCCEEEEecCCCcEEEEEC
Confidence 999999999999999999999999999999875421 234567899999999 7899999999999999999
Q ss_pred CccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 005352 517 PNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNC 558 (701)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~ 558 (701)
.+...... ..+...+.+++|+|++++|++++.||.|++|++
T Consensus 295 ~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 295 PYGASIFQ-SKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp TTCCEEEE-EECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred CCCeEEEE-ecCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 87665543 347889999999999999999999999999996
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-33 Score=300.34 Aligned_cols=302 Identities=13% Similarity=0.152 Sum_probs=240.9
Q ss_pred ecccCcceeeecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccC----C---CEEEEEeCCC
Q 005352 200 VDKQGEGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPD----G---QYLASAGDDG 272 (701)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd----g---~~Lasgs~Dg 272 (701)
..|.+.+.++.+++..+++++.|+.|+||+....... ........+.+|...|++++|+|+ + ++|++++.||
T Consensus 13 ~~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg 91 (397)
T 1sq9_A 13 KAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNE-NPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSG 91 (397)
T ss_dssp SCSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTC-CGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTS
T ss_pred hhhhcCeEEEEecCCeEEEEcCCCEEEEEECCCcccc-cCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCC
Confidence 3577888999999988999999999999998754311 112223467789999999999999 9 9999999999
Q ss_pred cEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcC
Q 005352 273 VVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHG 352 (701)
Q Consensus 273 ~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (701)
.|++|++.+++.... ..+..+.+
T Consensus 92 ~i~iw~~~~~~~~~~---------------------------------------------------------~~~~~~~~ 114 (397)
T 1sq9_A 92 DLLFYRITREDETKK---------------------------------------------------------VIFEKLDL 114 (397)
T ss_dssp CEEEEEEEECTTTCC---------------------------------------------------------EEEEEECC
T ss_pred CEEEEEccCCccccc---------------------------------------------------------ccceeecc
Confidence 999999987642000 11345566
Q ss_pred C-----ccCeEEEEEe----cCC-e-EEEEECCCcEEEEECCC------Ceeee-----eec--------CCCCeEEEEE
Q 005352 353 H-----SGEILDLSWS----KNN-Y-LLSASIDKTVRLWRVGN------DHCLR-----VFP--------HSNYVTCVHF 402 (701)
Q Consensus 353 h-----~~~I~~l~~s----~~~-~-l~s~s~dg~I~iWd~~~------~~~~~-----~~~--------h~~~V~~l~f 402 (701)
| ...|.+++|+ |++ + |++++.||.|++||+.+ ++.+. .+. |...|.+++|
T Consensus 115 ~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 194 (397)
T 1sq9_A 115 LDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDI 194 (397)
T ss_dssp SCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEE
T ss_pred cccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEE
Confidence 7 5899999999 888 8 99999999999999988 65554 442 7889999999
Q ss_pred eeCCCCEEEEEEcCCcEEEEeCCCCcEEEEec----C---CCcEEEEEEeeCCCeEEEEecC---CcEEEEECCCCeeee
Q 005352 403 NPVDDNYFISGSIDGKVRIWAVLSCHVVDWVD----I---RQIVTAVCYRPDGQGGIVGSMM---GDCRFYNVSDNHLEL 472 (701)
Q Consensus 403 ~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~----~---~~~i~~i~~sp~g~~l~~gs~d---g~v~i~d~~~~~~~~ 472 (701)
+| ++ +|++++.||.|++||+++++.+..+. | ...|.+++|+|++++|++++.| |.|++||+++.+...
T Consensus 195 ~~-~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~ 272 (397)
T 1sq9_A 195 SE-RG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIG 272 (397)
T ss_dssp CT-TS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEE
T ss_pred CC-Cc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccc
Confidence 99 88 99999999999999999988775544 5 8899999999999999999999 999999999876543
Q ss_pred eeeEEee-----cccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecc------cC-------------
Q 005352 473 DAEICVH-----SKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGL------RR------------- 528 (701)
Q Consensus 473 ~~~~~~~-----~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~------~~------------- 528 (701)
....... .....+...|.+++|+| ++.+|++++.|+.|++||+.+........ .|
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 351 (397)
T 1sq9_A 273 SLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDS 351 (397)
T ss_dssp EECBC--------CCBSBSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCB
T ss_pred eeccCcccccccccccccCCcEEEEEECC-CCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhcccccccc
Confidence 2211000 00011567899999999 78999999999999999998765555444 45
Q ss_pred --CCCeEEEEEecCC----------CEEEEEeCCCcEEEEeCCCCC
Q 005352 529 --SGNQLSACFTSDG----------KHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 529 --~~~v~~l~~s~dg----------~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
...|.+++|+|++ ++|++++.||.|++|++.+++
T Consensus 352 ~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 352 LAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp CSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred ccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 8999999999998 799999999999999998763
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-34 Score=297.94 Aligned_cols=318 Identities=15% Similarity=0.160 Sum_probs=254.6
Q ss_pred CCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecC
Q 005352 249 HDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTS 328 (701)
Q Consensus 249 H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (701)
|.++|.+++|+|||++|+++..++.+.+|......
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~--------------------------------------------- 42 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHA--------------------------------------------- 42 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEE---------------------------------------------
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCcc---------------------------------------------
Confidence 56789999999999999998877766555332211
Q ss_pred CccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeee------cCCCCeEEEE
Q 005352 329 ESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVF------PHSNYVTCVH 401 (701)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~------~h~~~V~~l~ 401 (701)
. .....+|...|.+++|+|++ +|++++ ||.|++||+.++.....+ .|...|.+++
T Consensus 43 ----------------~-~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~ 104 (337)
T 1gxr_A 43 ----------------R-QINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCK 104 (337)
T ss_dssp ----------------E-EEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEE
T ss_pred ----------------c-cceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEE
Confidence 1 12234799999999999999 888887 999999999876533222 4889999999
Q ss_pred EeeCCCCEEEEEEcCCcEEEEeCCCCc--EE-EEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEe
Q 005352 402 FNPVDDNYFISGSIDGKVRIWAVLSCH--VV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICV 478 (701)
Q Consensus 402 f~p~~~~~l~sgs~dg~v~iwd~~~~~--~~-~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~ 478 (701)
|+| ++++|++++.|+.|++||+.+++ .. ....+...+.+++|+|+++.+++++.+|.|++||+++.+....
T Consensus 105 ~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~----- 178 (337)
T 1gxr_A 105 LLP-DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQ----- 178 (337)
T ss_dssp ECT-TSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE-----
T ss_pred EcC-CCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeee-----
Confidence 999 99999999999999999999876 22 4556788899999999999999999999999999998765432
Q ss_pred ecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 005352 479 HSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNC 558 (701)
Q Consensus 479 ~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~ 558 (701)
...+...|.+++|+| ++.++++++.|+.|++||+.+....... .+...+.+++|+|++++|++++.|+.|++|++
T Consensus 179 ---~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~ 253 (337)
T 1gxr_A 179 ---FQGHTDGASCIDISN-DGTKLWTGGLDNTVRSWDLREGRQLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHV 253 (337)
T ss_dssp ---ECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred ---eecccCceEEEEECC-CCCEEEEEecCCcEEEEECCCCceEeee-cCCCceEEEEECCCCCEEEEEcCCCcEEEEEC
Confidence 233567899999999 7899999999999999999876544443 47788999999999999999999999999999
Q ss_pred CCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCCcccCC
Q 005352 559 IGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATW 638 (701)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W 638 (701)
.+++.. .+ ......+..++|+|+ +..+++++.++.+++|
T Consensus 254 ~~~~~~---------~~----------------------------~~~~~~v~~~~~~~~----~~~l~~~~~dg~i~~~ 292 (337)
T 1gxr_A 254 NKPDKY---------QL----------------------------HLHESCVLSLKFAYC----GKWFVSTGKDNLLNAW 292 (337)
T ss_dssp TSSCEE---------EE----------------------------CCCSSCEEEEEECTT----SSEEEEEETTSEEEEE
T ss_pred CCCCeE---------EE----------------------------cCCccceeEEEECCC----CCEEEEecCCCcEEEE
Confidence 876410 00 011234566788886 6678899999999999
Q ss_pred CCccCCCCccccccccchhhhhhhhhcccccccccCCCccEEEEecCCCeEeEEee
Q 005352 639 PEEKLPALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFLN 694 (701)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivTgg~DG~Irvw~~ 694 (701)
+.+....+... .+ ...+.+++++++ +.+|++|+.||.|++|+.
T Consensus 293 ~~~~~~~~~~~-~~-----------~~~v~~~~~s~~-~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 293 RTPYGASIFQS-KE-----------SSSVLSCDISVD-DKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp ETTTCCEEEEE-EC-----------SSCEEEEEECTT-SCEEEEEETTSCEEEEEE
T ss_pred ECCCCeEEEEe-cC-----------CCcEEEEEECCC-CCEEEEecCCCeEEEEEE
Confidence 98877655332 12 346777888888 999999999999999985
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-34 Score=335.32 Aligned_cols=245 Identities=10% Similarity=0.121 Sum_probs=193.1
Q ss_pred eccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEee
Q 005352 246 IQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLR 325 (701)
Q Consensus 246 l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (701)
..+|.+.|++|+|+|++++||+|+.||.|+||+..+.+..
T Consensus 13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~---------------------------------------- 52 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVV---------------------------------------- 52 (902)
T ss_dssp EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEE----------------------------------------
T ss_pred ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEE----------------------------------------
Confidence 4579999999999999999999999999999997654321
Q ss_pred ecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEee
Q 005352 326 RTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNP 404 (701)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p 404 (701)
....|...|.+++|+| + +|++++.|++|++||+.+++++..+.|...|++++|+|
T Consensus 53 -----------------------~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~~~~~V~~v~~sp 108 (902)
T 2oaj_A 53 -----------------------IKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVFVPGKITSIDTDA 108 (902)
T ss_dssp -----------------------EECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEECSSCEEEEECCT
T ss_pred -----------------------EEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEcCCCCEEEEEECC
Confidence 1123778999999999 6 89999999999999999999999999889999999999
Q ss_pred CCCCEEEEEEcCCcEEEEeCCCCcEEEE------------ecCCCcEEEEEEeeC-CCeEEEEecCCcEEEEECCCCeee
Q 005352 405 VDDNYFISGSIDGKVRIWAVLSCHVVDW------------VDIRQIVTAVCYRPD-GQGGIVGSMMGDCRFYNVSDNHLE 471 (701)
Q Consensus 405 ~~~~~l~sgs~dg~v~iwd~~~~~~~~~------------~~~~~~i~~i~~sp~-g~~l~~gs~dg~v~i~d~~~~~~~ 471 (701)
++++|++|+.||.|++||+.+++.... ..|...|++++|+|+ +..+++|+.||.| +||+++++..
T Consensus 109 -~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~ 186 (902)
T 2oaj_A 109 -SLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIK 186 (902)
T ss_dssp -TCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEE
T ss_pred -CCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceE
Confidence 999999999999999999998876421 346789999999996 5789999999999 9999988754
Q ss_pred eeeeEEee----------cccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeee-------cc--------
Q 005352 472 LDAEICVH----------SKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYK-------GL-------- 526 (701)
Q Consensus 472 ~~~~~~~~----------~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~-------~~-------- 526 (701)
........ .....|...|++++|+| ++.+|++++.|+.|++||+++...... .+
T Consensus 187 ~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fsp-dg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~ 265 (902)
T 2oaj_A 187 QSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHP-NSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIR 265 (902)
T ss_dssp EEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECT-TSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCC
T ss_pred EEEecccCCcCCCcccccccccccCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCC
Confidence 33211100 00122346799999999 689999999999999999976543221 11
Q ss_pred ---cCCCCeEEEEEec----CC-CEEEEEeCC-----CcEEEEe
Q 005352 527 ---RRSGNQLSACFTS----DG-KHIVSAGED-----SNVYMWN 557 (701)
Q Consensus 527 ---~~~~~v~~l~~s~----dg-~~l~sgs~D-----g~I~iWd 557 (701)
.+...|.+++|++ ++ .+|++|+.| ..+.+|+
T Consensus 266 ~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~ 309 (902)
T 2oaj_A 266 DSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMID 309 (902)
T ss_dssp CCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEE
T ss_pred CCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEe
Confidence 1344789999964 33 456666554 2566665
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-34 Score=303.99 Aligned_cols=251 Identities=12% Similarity=0.115 Sum_probs=195.3
Q ss_pred eccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEee
Q 005352 246 IQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLR 325 (701)
Q Consensus 246 l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (701)
++.|.++|++++|+|+|++||+|+.|+.|+|||+.++..
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~----------------------------------------- 45 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGW----------------------------------------- 45 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEE-----------------------------------------
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCce-----------------------------------------
Confidence 445788999999999999999999999999999987621
Q ss_pred ecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCe---eeee-ecCCCCeEEE
Q 005352 326 RTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDH---CLRV-FPHSNYVTCV 400 (701)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~---~~~~-~~h~~~V~~l 400 (701)
+.+..+.+|...|.+++|+|++ +|++++.|++|++||+.+++ .... ..|...|+++
T Consensus 46 -------------------~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~ 106 (377)
T 3dwl_C 46 -------------------KHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFV 106 (377)
T ss_dssp -------------------EECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEE
T ss_pred -------------------EEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEE
Confidence 1123456799999999999998 99999999999999999887 3333 3599999999
Q ss_pred EEeeCCCCEEEEEEcCCcEEEEeCCCCcE----EEEec-CCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeee--
Q 005352 401 HFNPVDDNYFISGSIDGKVRIWAVLSCHV----VDWVD-IRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELD-- 473 (701)
Q Consensus 401 ~f~p~~~~~l~sgs~dg~v~iwd~~~~~~----~~~~~-~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~-- 473 (701)
+|+| ++++|++++.|+.|++||+++++. ..+.. |...|++++|+|++++|++++.|+.|++||+........
T Consensus 107 ~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 185 (377)
T 3dwl_C 107 RWSP-NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPE 185 (377)
T ss_dssp ECCT-TSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCC
T ss_pred EECC-CCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCcc
Confidence 9999 999999999999999999998862 34444 889999999999999999999999999999964331110
Q ss_pred --------eeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccce----eeecccCCCCeEEEEEecCC
Q 005352 474 --------AEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIG----KYKGLRRSGNQLSACFTSDG 541 (701)
Q Consensus 474 --------~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~----~~~~~~~~~~v~~l~~s~dg 541 (701)
......... .|...|.+++|+| ++.+|++++.|+.|++||+.+... ......|...|.+++|+|++
T Consensus 186 ~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 263 (377)
T 3dwl_C 186 ASVWGSRLPFNTVCAEY-PSGGWVHAVGFSP-SGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANES 263 (377)
T ss_dssp SCSSCSCCCEEEEEECC-CCSSSEEEEEECT-TSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETT
T ss_pred ccccccccchhhhhhcc-cCCceEEEEEECC-CCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCC
Confidence 000111112 6778899999999 788999999999999999987654 44445588899999999999
Q ss_pred CEEEEEeCCCcEEEEeCCC
Q 005352 542 KHIVSAGEDSNVYMWNCIG 560 (701)
Q Consensus 542 ~~l~sgs~Dg~I~iWd~~~ 560 (701)
++|++|+.|+.+ +|+...
T Consensus 264 ~~l~~~~~~~~~-~~~~~~ 281 (377)
T 3dwl_C 264 AIVAAGYNYSPI-LLQGNE 281 (377)
T ss_dssp EEEEEESSSSEE-EECCCC
T ss_pred CEEEEEcCCcEE-EEEeCC
Confidence 999999866655 777654
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-33 Score=327.14 Aligned_cols=283 Identities=19% Similarity=0.262 Sum_probs=234.7
Q ss_pred cccCcceee--ecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEE
Q 005352 201 DKQGEGERV--RLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQ 278 (701)
Q Consensus 201 ~~~~~~~~~--~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd 278 (701)
.|.+.+.++ ++++..+++++.++.|+||++.... ..+.+.+|.++|++++|+|++++|++|+.||.|+|||
T Consensus 11 ~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~-------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~ 83 (814)
T 3mkq_A 11 NRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQV-------EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN 83 (814)
T ss_dssp EECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE-------EEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred cCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCc-------eEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence 455666554 4556678889999999999975432 2245778999999999999999999999999999999
Q ss_pred eecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeE
Q 005352 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEIL 358 (701)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~ 358 (701)
+.+++ .+..+.+|...|+
T Consensus 84 ~~~~~--------------------------------------------------------------~~~~~~~~~~~v~ 101 (814)
T 3mkq_A 84 YNTGE--------------------------------------------------------------KVVDFEAHPDYIR 101 (814)
T ss_dssp TTTCC--------------------------------------------------------------EEEEEECCSSCEE
T ss_pred CCCCc--------------------------------------------------------------EEEEEecCCCCEE
Confidence 98764 3445678999999
Q ss_pred EEEEecCC-eEEEEECCCcEEEEECCCC-eeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEE-ec
Q 005352 359 DLSWSKNN-YLLSASIDKTVRLWRVGND-HCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDW-VD 434 (701)
Q Consensus 359 ~l~~s~~~-~l~s~s~dg~I~iWd~~~~-~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~-~~ 434 (701)
+++|+|++ +|++++.||+|++||+.++ .....+. |...|.+++|+|.++++|++++.||.|++||+.++..... ..
T Consensus 102 ~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~ 181 (814)
T 3mkq_A 102 SIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTT 181 (814)
T ss_dssp EEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEEC
T ss_pred EEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEec
Confidence 99999999 9999999999999999987 5556655 8899999999996678999999999999999987765533 33
Q ss_pred -CCCcEEEEEEee--CCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcE
Q 005352 435 -IRQIVTAVCYRP--DGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQV 511 (701)
Q Consensus 435 -~~~~i~~i~~sp--~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I 511 (701)
+...+.+++|+| ++.++++++.+|.|++||+.+++.... ...+...|++++|+| ++.++++++.||.|
T Consensus 182 ~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~--------~~~~~~~v~~~~~~~-~~~~l~~~~~dg~v 252 (814)
T 3mkq_A 182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVAT--------LEGHMSNVSFAVFHP-TLPIIISGSEDGTL 252 (814)
T ss_dssp CCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEE--------EECCSSCEEEEEECS-SSSEEEEEETTSCE
T ss_pred CCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEE--------EcCCCCCEEEEEEcC-CCCEEEEEeCCCeE
Confidence 348899999999 999999999999999999998765432 123567899999999 78899999999999
Q ss_pred EEEeCCccceeeecccCCCCeEEEEEecCCC--EEEEEeCCCcEEEEeCCCCC
Q 005352 512 RILQGPNVIGKYKGLRRSGNQLSACFTSDGK--HIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 512 ~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~--~l~sgs~Dg~I~iWd~~~~~ 562 (701)
++||..+.........+...+.+++|+|++. +++++ .|+.+.+|++....
T Consensus 253 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 304 (814)
T 3mkq_A 253 KIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASG-FDNGFTVLSLGNDE 304 (814)
T ss_dssp EEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEE-ETTEEEEEECSCCS
T ss_pred EEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEE-eCCCEEEEEcCCCC
Confidence 9999987766666666888999999999987 45555 47779999987665
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-33 Score=302.42 Aligned_cols=343 Identities=14% Similarity=0.175 Sum_probs=255.4
Q ss_pred ccCcceeeecC--cc-ccccccccceEEEEEc----cCccc-----hhhhccc----CceeccCCCcEEEEEEccCCCEE
Q 005352 202 KQGEGERVRLN--EE-DAMFCSKVQRVKVYHC----KKRSK-----ELSALYK----GQEIQAHDGSILTMKFSPDGQYL 265 (701)
Q Consensus 202 ~~~~~~~~~~~--~~-~~~~~~~d~~v~vw~~----~~~~~-----~~~~~~~----~~~l~~H~~~I~~l~fspdg~~L 265 (701)
|.+.+.++.++ +. .+++++.|+.|+||++ ..... ....+.. .....+|.+.|++++|+|++++|
T Consensus 44 ~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 123 (425)
T 1r5m_A 44 KLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSI 123 (425)
T ss_dssp ECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEE
T ss_pred ccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEE
Confidence 44566665554 45 7888999999999998 44321 1111100 01122378899999999999999
Q ss_pred EEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCC
Q 005352 266 ASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEK 345 (701)
Q Consensus 266 asgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (701)
++|+.||.|++|| .++ +
T Consensus 124 ~~~~~dg~i~i~~-~~~--------------------------------------------------------------~ 140 (425)
T 1r5m_A 124 VTGVENGELRLWN-KTG--------------------------------------------------------------A 140 (425)
T ss_dssp EEEETTSCEEEEE-TTS--------------------------------------------------------------C
T ss_pred EEEeCCCeEEEEe-CCC--------------------------------------------------------------C
Confidence 9999999999999 333 2
Q ss_pred CeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCC---------------eEEEEEeeCCCC
Q 005352 346 PLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNY---------------VTCVHFNPVDDN 408 (701)
Q Consensus 346 ~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~---------------V~~l~f~p~~~~ 408 (701)
.+..+.+|...|.+++|+|++ +|++++.|+.|++||+.+++.+..+. +... +.+++|+| + .
T Consensus 141 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~ 218 (425)
T 1r5m_A 141 LLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVD-D-D 218 (425)
T ss_dssp EEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEE-T-T
T ss_pred eeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcC-C-C
Confidence 345567899999999999999 99999999999999999999988886 4444 89999998 5 5
Q ss_pred EEEEEEcCCcEEEEeCCCCcEEE-EecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCC
Q 005352 409 YFISGSIDGKVRIWAVLSCHVVD-WVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCK 487 (701)
Q Consensus 409 ~l~sgs~dg~v~iwd~~~~~~~~-~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~ 487 (701)
.+++++.+|.|++||+.+++.+. ...|...|.+++|+|++++|++++.||.|++||+.+.+.... ...+..
T Consensus 219 ~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~--------~~~~~~ 290 (425)
T 1r5m_A 219 KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNC--------FYGHSQ 290 (425)
T ss_dssp EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEE--------ECCCSS
T ss_pred EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceE--------ecCCCc
Confidence 68999999999999999887664 446888999999999999999999999999999987654321 234567
Q ss_pred CeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCCCCcc
Q 005352 488 RITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHD 567 (701)
Q Consensus 488 ~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~~~~ 567 (701)
.|.+++|+| ++ .+++++.|+.|++||+.+.........|...|.+++|+|++++|++++.||.|++|++.+++.+...
T Consensus 291 ~i~~~~~~~-~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~ 368 (425)
T 1r5m_A 291 SIVSASWVG-DD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRS 368 (425)
T ss_dssp CEEEEEEET-TT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC----
T ss_pred cEEEEEECC-CC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceee
Confidence 899999999 45 9999999999999999877666666668899999999999999999999999999999876532111
Q ss_pred ccccccccccccCCceEEecCCCCCCCCCCCCCcccc--CCC-C-CCCccccCCCccccCccccccCCCCcccCCCCc
Q 005352 568 QAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHV--SDD-D-SPENLAFAPARFSLGQEYVFESFPKGCATWPEE 641 (701)
Q Consensus 568 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~-~-~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~ 641 (701)
.... .... +. ......... ... . .+..++|+|+ +..+++++.|+.+++|+.+
T Consensus 369 ~~~~-------~~~~-----~~------~~~~~~~~~~~~~~~~~~v~~~~~s~~----~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 369 LYGN-------RDGI-----LN------PLPIPLYASYQSSQDNDYIFDLSWNCA----GNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp ----------------------------CEECCEEEEECCTTCCCCEEEEEECTT----SSEEEEEESSSCCEEEECC
T ss_pred eecc-------cccc-----cC------cccchhhhhhcCcccCCceEEEEccCC----CceEEEEecCceEEEEeec
Confidence 0000 0000 00 000001111 112 2 6778899997 6688899999999999864
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-32 Score=318.11 Aligned_cols=250 Identities=20% Similarity=0.323 Sum_probs=211.6
Q ss_pred ceeccCCCcEEEEEEccC-CCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeE
Q 005352 244 QEIQAHDGSILTMKFSPD-GQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (701)
Q Consensus 244 ~~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (701)
..+++|.+.|++|+|+|+ +.+|+||+.|++|+||++.+.....
T Consensus 376 ~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~------------------------------------ 419 (694)
T 3dm0_A 376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAY------------------------------------ 419 (694)
T ss_dssp EEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCS------------------------------------
T ss_pred hhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccc------------------------------------
Confidence 357899999999999987 4799999999999999987642100
Q ss_pred EeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEE
Q 005352 323 SLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCV 400 (701)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l 400 (701)
......+.+|...|.+++|+|++ +|++|+.|++|+|||+.+++++..+. |...|.++
T Consensus 420 ---------------------~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~ 478 (694)
T 3dm0_A 420 ---------------------GVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSV 478 (694)
T ss_dssp ---------------------CEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEE
T ss_pred ---------------------ccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEE
Confidence 02245678999999999999999 99999999999999999999888876 99999999
Q ss_pred EEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEE----ecCCCcEEEEEEeeCC--CeEEEEecCCcEEEEECCCCeeeeee
Q 005352 401 HFNPVDDNYFISGSIDGKVRIWAVLSCHVVDW----VDIRQIVTAVCYRPDG--QGGIVGSMMGDCRFYNVSDNHLELDA 474 (701)
Q Consensus 401 ~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~----~~~~~~i~~i~~sp~g--~~l~~gs~dg~v~i~d~~~~~~~~~~ 474 (701)
+|+| ++++|++++.|++|++||+........ ..|...|.+++|+|++ ..+++++.|+.|++||+++.+....
T Consensus 479 ~~s~-~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~- 556 (694)
T 3dm0_A 479 AFSL-DNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRST- 556 (694)
T ss_dssp EECT-TSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEE-
T ss_pred EEeC-CCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEE-
Confidence 9999 999999999999999999876654443 2477889999999987 5799999999999999998765321
Q ss_pred eEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEE
Q 005352 475 EICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVY 554 (701)
Q Consensus 475 ~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~ 554 (701)
...|...|++++|+| ++.+|++++.|+.|++||+.+........ +...|.+++|+|++.+|++++ |+.|+
T Consensus 557 -------~~~h~~~v~~v~~sp-dg~~l~sg~~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~-~~~i~ 626 (694)
T 3dm0_A 557 -------LAGHTGYVSTVAVSP-DGSLCASGGKDGVVLLWDLAEGKKLYSLE-ANSVIHALCFSPNRYWLCAAT-EHGIK 626 (694)
T ss_dssp -------ECCCSSCEEEEEECT-TSSEEEEEETTSBCEEEETTTTEEEECCB-CSSCEEEEEECSSSSEEEEEE-TTEEE
T ss_pred -------EcCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCceEEEec-CCCcEEEEEEcCCCcEEEEEc-CCCEE
Confidence 345678899999999 78999999999999999998776655443 567899999999999888776 55699
Q ss_pred EEeCCCCC
Q 005352 555 MWNCIGHE 562 (701)
Q Consensus 555 iWd~~~~~ 562 (701)
|||+.++.
T Consensus 627 iwd~~~~~ 634 (694)
T 3dm0_A 627 IWDLESKS 634 (694)
T ss_dssp EEETTTTE
T ss_pred EEECCCCC
Confidence 99998765
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-33 Score=313.33 Aligned_cols=289 Identities=11% Similarity=0.067 Sum_probs=203.5
Q ss_pred EEcCCccCeEEEEEecC------C-eEEEEECCCcEEEEECCCCeee-----------eee-cCCCCeEEEEEeeCCCCE
Q 005352 349 EFHGHSGEILDLSWSKN------N-YLLSASIDKTVRLWRVGNDHCL-----------RVF-PHSNYVTCVHFNPVDDNY 409 (701)
Q Consensus 349 ~~~~h~~~I~~l~~s~~------~-~l~s~s~dg~I~iWd~~~~~~~-----------~~~-~h~~~V~~l~f~p~~~~~ 409 (701)
.+.+|.+.|.+++|+|+ + +|++++.||+|+|||+.++.+. ..+ .|...|++++|+| + ..
T Consensus 202 ~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~-~-~~ 279 (524)
T 2j04_B 202 TIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLS-P-TT 279 (524)
T ss_dssp EEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESS-S-SE
T ss_pred EEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecC-C-Ce
Confidence 35568889999999996 3 9999999999999999876422 233 3889999999997 4 58
Q ss_pred EEEEEcCCcEEEEeCCCCcE--EEEecCCCcEEEE--EEeeCC-CeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCC
Q 005352 410 FISGSIDGKVRIWAVLSCHV--VDWVDIRQIVTAV--CYRPDG-QGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKA 484 (701)
Q Consensus 410 l~sgs~dg~v~iwd~~~~~~--~~~~~~~~~i~~i--~~sp~g-~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~ 484 (701)
|++|+.||+|++||++++.. .....|...|++| +|+|++ ++|++|+.|++|++||+++.+...... .+.
T Consensus 280 lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~--~~~---- 353 (524)
T 2j04_B 280 VVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTV--SRF---- 353 (524)
T ss_dssp EEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEE--EEC----
T ss_pred EEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccc--ccc----
Confidence 99999999999999987642 2456789999999 567887 899999999999999998765432111 111
Q ss_pred CCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCCC
Q 005352 485 PCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEP 564 (701)
Q Consensus 485 ~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~ 564 (701)
....|.+++|+| ++..+++++.|++|++||++..........|...|++++|+|+|++|++|+.||+|++||+......
T Consensus 354 ~~~~v~~v~fsp-~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~ 432 (524)
T 2j04_B 354 RGSNLVPVVYCP-QIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRLLH 432 (524)
T ss_dssp SCCSCCCEEEET-TTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTTT
T ss_pred ccCcccceEeCC-CcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhcc
Confidence 112478899999 6788999999999999999876654444559999999999999999999999999999997543210
Q ss_pred CccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCCcccCCCCc-cC
Q 005352 565 AHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEE-KL 643 (701)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~-~~ 643 (701)
.+.... .|. ....+..++|+|++ ..+.. .....+|... +.
T Consensus 433 ---------~~~~~~-------~~~----------------~~~~v~~v~~sp~g----~~~~~---~~~~~~~~~~~~g 473 (524)
T 2j04_B 433 ---------GIKNSS-------ATQ----------------KSLRLWKWDYSIKD----DKYRI---DSSYEVYPLTVND 473 (524)
T ss_dssp ---------CC-------------C----------------CCCEEEECBCCSSS----CEEEE---CCCCCCCC-----
T ss_pred ---------ccccCc-------cce----------------eeeEEEEeccCCCC----CeEEc---cCCceecccccCC
Confidence 000000 000 00012345667763 21211 1233444332 23
Q ss_pred CCCccccccccchhhhhhhhhcccccccccCCC--ccEEEEecCCCeEeEEeecC
Q 005352 644 PALSQLSSASALHKSQYKFLKSSCLCTTSSHAW--GLVIVTAGWDGRIRSFLNYG 696 (701)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~ivTgg~DG~Irvw~~~g 696 (701)
..+..+.+| ...|++++++++. +..|++|+.||.||||+--|
T Consensus 474 ~~~~~l~gh-----------~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 474 VSKAKIDAH-----------GINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp --------C-----------CCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred cceeeecCC-----------CceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence 334455455 4688999999982 45999999999999998543
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-33 Score=302.22 Aligned_cols=332 Identities=12% Similarity=0.074 Sum_probs=247.6
Q ss_pred cEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCcc
Q 005352 252 SILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESA 331 (701)
Q Consensus 252 ~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (701)
.+++++|+|+|++|++|+.||.|++||+.+++...
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~--------------------------------------------- 92 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSK--------------------------------------------- 92 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTT---------------------------------------------
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEecccceee---------------------------------------------
Confidence 45579999999999999999999999987754211
Q ss_pred EEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeee-cCCCCeEEEEEeeCCCCE
Q 005352 332 CVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVF-PHSNYVTCVHFNPVDDNY 409 (701)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~-~h~~~V~~l~f~p~~~~~ 409 (701)
.+..| ..+....|++++ +|++++.|+.|++||+.++++...+ .|...|++++|+| ++++
T Consensus 93 -----------------~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~ 153 (420)
T 3vl1_A 93 -----------------MLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFP-SGEA 153 (420)
T ss_dssp -----------------TSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECT-TSSE
T ss_pred -----------------EEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECC-CCCE
Confidence 11223 334455678888 9999999999999999999998887 4999999999999 9999
Q ss_pred EEEEEcCCcEEEEeCCCCcEE-EEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCC-
Q 005352 410 FISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCK- 487 (701)
Q Consensus 410 l~sgs~dg~v~iwd~~~~~~~-~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~- 487 (701)
|++++.|+.|++||+.+++.+ .+..|...|++++|+|+++.|++++.||.|++||+++++...... ....+..
T Consensus 154 l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~-----~~~~~~~~ 228 (420)
T 3vl1_A 154 LISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFN-----RKENPHDG 228 (420)
T ss_dssp EEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEEC-----BTTBTTCC
T ss_pred EEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEee-----cCCCCCCC
Confidence 999999999999999988766 455689999999999999999999999999999999887543321 1112333
Q ss_pred --------------------CeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecc-cCCCCeEEEEEecCCC-EEE
Q 005352 488 --------------------RITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGL-RRSGNQLSACFTSDGK-HIV 545 (701)
Q Consensus 488 --------------------~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~-~~~~~v~~l~~s~dg~-~l~ 545 (701)
.+.+++|+| ++.+|++++.|+.|++||+.+........ .|...|.+++|+|++. +|+
T Consensus 229 v~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 307 (420)
T 3vl1_A 229 VNSIALFVGTDRQLHEISTSKKNNLEFGT-YGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIY 307 (420)
T ss_dssp EEEEEEEECCCSSCGGGCCCCCCTTCSSC-TTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEE
T ss_pred ccEEEEecCCcceeeecccCcccceEEcC-CCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEE
Confidence 344455566 68899999999999999998766555443 3778999999999999 999
Q ss_pred EEeCCCcEEEEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCcc
Q 005352 546 SAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQE 625 (701)
Q Consensus 546 sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~ 625 (701)
+|+.||.|++||+.+++.+. ..+... ....+..+. .|+ +..
T Consensus 308 ~g~~dg~i~vwd~~~~~~~~-------~~~~~~---------------------------~~~~v~~~~-~~~----~~~ 348 (420)
T 3vl1_A 308 AGYENGMLAQWDLRSPECPV-------GEFLIN---------------------------EGTPINNVY-FAA----GAL 348 (420)
T ss_dssp EEETTSEEEEEETTCTTSCS-------EEEEES---------------------------TTSCEEEEE-EET----TEE
T ss_pred EEeCCCeEEEEEcCCCcCch-------hhhhcc---------------------------CCCCceEEE-eCC----CCE
Confidence 99999999999998875311 111000 111223332 232 567
Q ss_pred ccccCCCCcccCCCCccCCCCccccccccchhhhhhhhhcccccccccCCCcc---EEEEecCCCeEeEEeec
Q 005352 626 YVFESFPKGCATWPEEKLPALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGL---VIVTAGWDGRIRSFLNY 695 (701)
Q Consensus 626 ~~~~s~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~ivTgg~DG~Irvw~~~ 695 (701)
+++++.|+.+++|+.........+.... .......+.+.+.+++++++ +. .|+++|.+|.+++|..-
T Consensus 349 l~s~~~d~~v~iw~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~s~~-~~~~g~l~a~g~~g~~~~~~~~ 418 (420)
T 3vl1_A 349 FVSSGFDTSIKLDIISDPESERPAIEFE--TPTFLVSNDDAVSQFCYVSD-DESNGEVLEVGKNNFCALYNLS 418 (420)
T ss_dssp EEEETTTEEEEEEEECCTTCCSCEECTT--SCEEECCSSCCCCEEEEECC-SSSSCEEEEEETTTEEEEEESC
T ss_pred EEEecCCccEEEEeccCCCCCccceecc--CccEEccCCcceEEEEEccC-CCCcceEEEEcCCceEEEEecc
Confidence 8899999999999977643222111000 00000112356777788888 77 67777788999999853
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-33 Score=296.10 Aligned_cols=292 Identities=17% Similarity=0.276 Sum_probs=231.2
Q ss_pred cccCcceeeecCc------cccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccC----CCEEEEEeC
Q 005352 201 DKQGEGERVRLNE------EDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPD----GQYLASAGD 270 (701)
Q Consensus 201 ~~~~~~~~~~~~~------~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd----g~~Lasgs~ 270 (701)
.|...+.++.+++ ..+++++.++.|+||++..... ...........|.+.|++++|+|+ |++|++|+.
T Consensus 16 ~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~ 93 (366)
T 3k26_A 16 DHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGE--IRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGS 93 (366)
T ss_dssp TTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGC--EEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEET
T ss_pred CCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcE--EEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecC
Confidence 4677888877763 3466677888999999864321 111111122247789999999999 679999999
Q ss_pred CCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEE
Q 005352 271 DGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEF 350 (701)
Q Consensus 271 Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (701)
||.|++||+.+++ .+..+
T Consensus 94 dg~i~v~d~~~~~--------------------------------------------------------------~~~~~ 111 (366)
T 3k26_A 94 RGIIRIINPITMQ--------------------------------------------------------------CIKHY 111 (366)
T ss_dssp TCEEEEECTTTCC--------------------------------------------------------------EEEEE
T ss_pred CCEEEEEEchhce--------------------------------------------------------------Eeeee
Confidence 9999999987763 34456
Q ss_pred cCCccCeEEEEEec-CC-eEEEEECCCcEEEEECCCCeeeeee----cCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeC
Q 005352 351 HGHSGEILDLSWSK-NN-YLLSASIDKTVRLWRVGNDHCLRVF----PHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAV 424 (701)
Q Consensus 351 ~~h~~~I~~l~~s~-~~-~l~s~s~dg~I~iWd~~~~~~~~~~----~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~ 424 (701)
.+|...|.+++|+| ++ +|++++.||.|++||+.+++.+..+ .|...|.+++|+| ++++|++++.||.|++||+
T Consensus 112 ~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~ 190 (366)
T 3k26_A 112 VGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDL-LGEKIMSCGMDHSLKLWRI 190 (366)
T ss_dssp ESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECT-TSSEEEEEETTSCEEEEES
T ss_pred cCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECC-CCCEEEEecCCCCEEEEEC
Confidence 78999999999999 77 9999999999999999999999887 4899999999999 9999999999999999999
Q ss_pred CCCcEEEEe-----------------------------cCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeee-
Q 005352 425 LSCHVVDWV-----------------------------DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDA- 474 (701)
Q Consensus 425 ~~~~~~~~~-----------------------------~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~- 474 (701)
++++..... .|...|.+++|+ ++++++++.||.|++||+.+.......
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~ 268 (366)
T 3k26_A 191 NSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKI 268 (366)
T ss_dssp CSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGC
T ss_pred CCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCcccccccc
Confidence 886543211 278899999998 779999999999999999876431100
Q ss_pred -----eEEeecccCCCCCCeeEEEEecCC--CCEEEEEECCCcEEEEeCCccce------eeecccCCCCeEEEEEecCC
Q 005352 475 -----EICVHSKKKAPCKRITGFQFLPQD--SSKVMVSCADSQVRILQGPNVIG------KYKGLRRSGNQLSACFTSDG 541 (701)
Q Consensus 475 -----~~~~~~~~~~~~~~i~~l~~~p~~--~~~l~~~s~dg~I~iwd~~~~~~------~~~~~~~~~~v~~l~~s~dg 541 (701)
..........+...|++++|+| + +.+|++++.|+.|++||+..... .+..+.+...|++++|+|++
T Consensus 269 ~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 347 (366)
T 3k26_A 269 KPSESNVTILGRFDYSQCDIWYMRFSM-DFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDS 347 (366)
T ss_dssp CTTCCCEEEEEEEECSSCCSSCCCCEE-CTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTS
T ss_pred ccCCcchheeccccccCCcEEEEEEcC-CCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCC
Confidence 0111122334557799999999 5 89999999999999999986432 34444447999999999999
Q ss_pred CEEEEEeCCCcEEEEeCCC
Q 005352 542 KHIVSAGEDSNVYMWNCIG 560 (701)
Q Consensus 542 ~~l~sgs~Dg~I~iWd~~~ 560 (701)
++|++++.||.|++||+.+
T Consensus 348 ~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 348 SILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp SEEEEEETTSEEEEEEC--
T ss_pred CeEEEEeCCCEEEEEEecC
Confidence 9999999999999999853
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-32 Score=300.46 Aligned_cols=318 Identities=18% Similarity=0.265 Sum_probs=252.2
Q ss_pred ceeccCCCcE-EEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeE
Q 005352 244 QEIQAHDGSI-LTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (701)
Q Consensus 244 ~~l~~H~~~I-~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (701)
..+++|.+.| .++.| ++.+|++|+.||.|++||+.+++
T Consensus 115 ~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~--------------------------------------- 153 (464)
T 3v7d_B 115 TTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKK--------------------------------------- 153 (464)
T ss_dssp EEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTE---------------------------------------
T ss_pred EEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCc---------------------------------------
Confidence 4678898885 66665 57799999999999999998764
Q ss_pred EeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCCeEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEE
Q 005352 323 SLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVH 401 (701)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~ 401 (701)
.+..+.+|.+.|.+++|+++++|++|+.||+|++||+.+++++..+. |...|.+++
T Consensus 154 -----------------------~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~ 210 (464)
T 3v7d_B 154 -----------------------FLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLD 210 (464)
T ss_dssp -----------------------EEEEECCCSSCEEEEEECSTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred -----------------------EEEEEeCCCcCEEEEEEcCCCEEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEE
Confidence 34456789999999999999999999999999999999999999887 999999999
Q ss_pred Eee-CCCCEEEEEEcCCcEEEEeCCCCcE------------------------EEEecCCCcEEEEEEeeCCCeEEEEec
Q 005352 402 FNP-VDDNYFISGSIDGKVRIWAVLSCHV------------------------VDWVDIRQIVTAVCYRPDGQGGIVGSM 456 (701)
Q Consensus 402 f~p-~~~~~l~sgs~dg~v~iwd~~~~~~------------------------~~~~~~~~~i~~i~~sp~g~~l~~gs~ 456 (701)
|++ .++++|++|+.||.|++||+.++.. .....|...+.++ +++++.+++|+.
T Consensus 211 ~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~ 288 (464)
T 3v7d_B 211 IVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSY 288 (464)
T ss_dssp EEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEET
T ss_pred EecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeC
Confidence 995 2668999999999999999987652 2344566677766 678999999999
Q ss_pred CCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEE
Q 005352 457 MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSAC 536 (701)
Q Consensus 457 dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~ 536 (701)
||.|++||+.+.+.... ...|...|.+++|+| ++.++++++.|+.|++||+.+.........|...|.+++
T Consensus 289 d~~i~vwd~~~~~~~~~--------~~~~~~~v~~~~~~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~ 359 (464)
T 3v7d_B 289 DNTLIVWDVAQMKCLYI--------LSGHTDRIYSTIYDH-ERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLR 359 (464)
T ss_dssp TSCEEEEETTTTEEEEE--------ECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred CCeEEEEECCCCcEEEE--------ecCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEE
Confidence 99999999998765432 234668899999999 789999999999999999987776666667899999999
Q ss_pred EecCCCEEEEEeCCCcEEEEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccC
Q 005352 537 FTSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFA 616 (701)
Q Consensus 537 ~s~dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s 616 (701)
|+ +.+|++++.||.|++||+.++.... .. ........++++
T Consensus 360 ~~--~~~l~s~s~dg~v~vwd~~~~~~~~--------~~-----------------------------~~~~~~~~~~~~ 400 (464)
T 3v7d_B 360 LS--DKFLVSAAADGSIRGWDANDYSRKF--------SY-----------------------------HHTNLSAITTFY 400 (464)
T ss_dssp EC--SSEEEEEETTSEEEEEETTTCCEEE--------EE-----------------------------ECTTCCCEEEEE
T ss_pred Ec--CCEEEEEeCCCcEEEEECCCCceee--------ee-----------------------------cCCCCccEEEEE
Confidence 97 5799999999999999998764210 00 011223445666
Q ss_pred CCccccCccccccCCCCcccCCCCccCCCCcc-ccccccchhhhhhhhhcccccccccCCCccEEEEecCCCeEeEEe
Q 005352 617 PARFSLGQEYVFESFPKGCATWPEEKLPALSQ-LSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFL 693 (701)
Q Consensus 617 p~~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivTgg~DG~Irvw~ 693 (701)
|+ +..+++++ ++.+++|+.+....+.. +..+ ...+++++++ . ..++++++.||.+.+|-
T Consensus 401 ~~----~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~-----------~~~v~~v~~~-~-~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 401 VS----DNILVSGS-ENQFNIYNLRSGKLVHANILKD-----------ADQIWSVNFK-G-KTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp EC----SSEEEEEE-TTEEEEEETTTCCEEESCTTTT-----------CSEEEEEEEE-T-TEEEEEEEETTEEEEEE
T ss_pred eC----CCEEEEec-CCeEEEEECCCCcEEehhhccC-----------CCcEEEEEec-C-CEEEEEEEeCCeEEEEE
Confidence 65 45566665 89999999998887665 2222 3567777775 3 67777777788766653
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-33 Score=302.82 Aligned_cols=252 Identities=14% Similarity=0.201 Sum_probs=201.0
Q ss_pred ee-ccCCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeE
Q 005352 245 EI-QAHDGSILTMKFSP-DGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (701)
Q Consensus 245 ~l-~~H~~~I~~l~fsp-dg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (701)
.+ .+|.+.|++|+|+| ++++||+|+.||+|+|||+.+.+....+
T Consensus 57 ~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~---------------------------------- 102 (437)
T 3gre_A 57 TLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVY---------------------------------- 102 (437)
T ss_dssp EECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCC----------------------------------
T ss_pred eeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCccc----------------------------------
Confidence 45 78999999999999 9999999999999999998762200000
Q ss_pred EeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECC---CCeeeeeec------
Q 005352 323 SLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVG---NDHCLRVFP------ 392 (701)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~---~~~~~~~~~------ 392 (701)
+....+ +|...|.+++|+|++ +|++++.||+|++||+. +++.+..+.
T Consensus 103 ----------------------~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~ 159 (437)
T 3gre_A 103 ----------------------SSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRK 159 (437)
T ss_dssp ----------------------SCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred ----------------------ceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEE
Confidence 112222 489999999999988 99999999999999995 554443332
Q ss_pred -------CCCCeEEEE--EeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEec---CCCcEEEEEEeeCCCeEEEEecCCcE
Q 005352 393 -------HSNYVTCVH--FNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVD---IRQIVTAVCYRPDGQGGIVGSMMGDC 460 (701)
Q Consensus 393 -------h~~~V~~l~--f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~---~~~~i~~i~~sp~g~~l~~gs~dg~v 460 (701)
+...+.++. ++| ++.+|++++.|+.|++||+++++.+..+. |...|++++|+|++++|++|+.||.|
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i 238 (437)
T 3gre_A 160 INLKNFGKNEYAVRMRAFVNE-EKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGII 238 (437)
T ss_dssp EEGGGGSSCCCEEEEEEEECS-SCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCE
T ss_pred EEccCcccccCceEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeE
Confidence 566777877 456 78899999999999999999998775443 67899999999999999999999999
Q ss_pred EEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecC---CCCEEEEEECCCcEEEEeCCcccee--eecc---------
Q 005352 461 RFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQ---DSSKVMVSCADSQVRILQGPNVIGK--YKGL--------- 526 (701)
Q Consensus 461 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~---~~~~l~~~s~dg~I~iwd~~~~~~~--~~~~--------- 526 (701)
++||+++++..... ...+...|++++|+|. ++.+|++++.|+.|++||+.+.... +..+
T Consensus 239 ~iwd~~~~~~~~~~-------~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 311 (437)
T 3gre_A 239 DIWDIRFNVLIRSW-------SFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHF 311 (437)
T ss_dssp EEEETTTTEEEEEE-------BCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGG
T ss_pred EEEEcCCccEEEEE-------ecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCcccee
Confidence 99999987654321 1234568999988763 5679999999999999999754322 2211
Q ss_pred ---------------cCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 527 ---------------RRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 527 ---------------~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
.|...|.+++|+ ++++|++|+.||.|++||+.+++
T Consensus 312 ~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~ 361 (437)
T 3gre_A 312 LPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELS 361 (437)
T ss_dssp SCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGG
T ss_pred cccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcc
Confidence 156679999999 88999999999999999998876
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-32 Score=323.17 Aligned_cols=249 Identities=15% Similarity=0.279 Sum_probs=218.2
Q ss_pred ceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEE
Q 005352 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (701)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (701)
+.+.+|.+.|++++|+|+|++||+|+.||.|+|||+.+++.
T Consensus 7 ~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~--------------------------------------- 47 (814)
T 3mkq_A 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVE--------------------------------------- 47 (814)
T ss_dssp EEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE---------------------------------------
T ss_pred eeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCce---------------------------------------
Confidence 56788999999999999999999999999999999987642
Q ss_pred eeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEE
Q 005352 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVH 401 (701)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~ 401 (701)
+..+.+|...|.+++|+|++ +|++++.||.|++||+.+++.+..+. |...|++++
T Consensus 48 -----------------------~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~ 104 (814)
T 3mkq_A 48 -----------------------VRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIA 104 (814)
T ss_dssp -----------------------EEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred -----------------------EEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEE
Confidence 34556899999999999999 99999999999999999999988887 999999999
Q ss_pred EeeCCCCEEEEEEcCCcEEEEeCCCC-cEE-EEecCCCcEEEEEEee-CCCeEEEEecCCcEEEEECCCCeeeeeeeEEe
Q 005352 402 FNPVDDNYFISGSIDGKVRIWAVLSC-HVV-DWVDIRQIVTAVCYRP-DGQGGIVGSMMGDCRFYNVSDNHLELDAEICV 478 (701)
Q Consensus 402 f~p~~~~~l~sgs~dg~v~iwd~~~~-~~~-~~~~~~~~i~~i~~sp-~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~ 478 (701)
|+| ++.+|++++.||.|++||+.++ ... ....|...|++++|+| +++.|++++.||.|++||+.+.......
T Consensus 105 ~s~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~---- 179 (814)
T 3mkq_A 105 VHP-TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTL---- 179 (814)
T ss_dssp ECS-SSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEE----
T ss_pred EeC-CCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEE----
Confidence 999 9999999999999999999886 443 4556889999999999 8899999999999999999876543221
Q ss_pred ecccCCCCCCeeEEEEecC-CCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEe
Q 005352 479 HSKKKAPCKRITGFQFLPQ-DSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWN 557 (701)
Q Consensus 479 ~~~~~~~~~~i~~l~~~p~-~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd 557 (701)
...+...+..++|+|. ++.++++++.|+.|++||..+.........|...|.+++|+|++++|++++.||.|++||
T Consensus 180 ---~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd 256 (814)
T 3mkq_A 180 ---TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256 (814)
T ss_dssp ---ECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEE
T ss_pred ---ecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 1233467899999983 578999999999999999987666665556889999999999999999999999999999
Q ss_pred CCCCC
Q 005352 558 CIGHE 562 (701)
Q Consensus 558 ~~~~~ 562 (701)
+.+++
T Consensus 257 ~~~~~ 261 (814)
T 3mkq_A 257 SSTYK 261 (814)
T ss_dssp TTTCS
T ss_pred CCCCc
Confidence 98865
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-32 Score=294.65 Aligned_cols=324 Identities=18% Similarity=0.294 Sum_probs=255.6
Q ss_pred ceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEE
Q 005352 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (701)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (701)
+.+.+|.+.|.. +++++|++|++|+.||.|++||+.+++
T Consensus 112 ~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~---------------------------------------- 150 (445)
T 2ovr_B 112 KVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGK---------------------------------------- 150 (445)
T ss_dssp EEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCC----------------------------------------
T ss_pred EEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCc----------------------------------------
Confidence 457789887533 355578999999999999999998764
Q ss_pred eeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCCeEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEE
Q 005352 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHF 402 (701)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f 402 (701)
.+..+.+|...|.+++|+ .++|++++.||+|++||+.+++++..+. |...|.+++|
T Consensus 151 ----------------------~~~~~~~h~~~v~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~ 207 (445)
T 2ovr_B 151 ----------------------CLRTLVGHTGGVWSSQMR-DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHL 207 (445)
T ss_dssp ----------------------EEEECCCCSSCEEEEEEE-TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred ----------------------EEEEEcCCCCCEEEEEec-CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEe
Confidence 334556899999999997 3499999999999999999999998887 8999999999
Q ss_pred eeCCCCEEEEEEcCCcEEEEeCCCCcEE-EEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecc
Q 005352 403 NPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSK 481 (701)
Q Consensus 403 ~p~~~~~l~sgs~dg~v~iwd~~~~~~~-~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~ 481 (701)
+ ++.|++|+.||.|++||+.+++.+ ....|...|.++++ +++.+++|+.||.|++||+++.+....
T Consensus 208 ~---~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~-------- 274 (445)
T 2ovr_B 208 H---EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHT-------- 274 (445)
T ss_dssp E---TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEE--------
T ss_pred c---CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEE--------
Confidence 5 468999999999999999998877 44568889999998 788999999999999999988765432
Q ss_pred cCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 005352 482 KKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGH 561 (701)
Q Consensus 482 ~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~ 561 (701)
...+...|.++.| ++.++++++.|+.|++||+.+.........|...+.++.+ ++++|++|+.||.|++||+.++
T Consensus 275 ~~~~~~~v~~~~~---~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~ 349 (445)
T 2ovr_B 275 LQGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTG 349 (445)
T ss_dssp ECCCSSCEEEEEE---CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTC
T ss_pred ecCCCCceEEEEE---CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCC
Confidence 2345678999998 5789999999999999999877766666668888888777 4679999999999999999876
Q ss_pred CCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCCcccCCCCc
Q 005352 562 EEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEE 641 (701)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~ 641 (701)
+.. ..+... ......+..+++++ ..+++++.|+.+++|+..
T Consensus 350 ~~~--------~~~~~~-------------------------~~~~~~v~~~~~~~------~~l~s~~~dg~v~iwd~~ 390 (445)
T 2ovr_B 350 QCL--------QTLQGP-------------------------NKHQSAVTCLQFNK------NFVITSSDDGTVKLWDLK 390 (445)
T ss_dssp CEE--------EEECST-------------------------TSCSSCEEEEEECS------SEEEEEETTSEEEEEETT
T ss_pred cEE--------EEEccC-------------------------CCCCCCEEEEEECC------CEEEEEeCCCeEEEEECC
Confidence 521 111000 00122334444433 468889999999999998
Q ss_pred cCCCCccccccccchhhhhhhhhcccccccccCCCccEEEEecCCCe----EeEEeec
Q 005352 642 KLPALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGR----IRSFLNY 695 (701)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivTgg~DG~----Irvw~~~ 695 (701)
....+..+... ....+.+.+++++++++ +.+|++|+.||+ |.+|+--
T Consensus 391 ~~~~~~~~~~~------~~~~~~~~v~~~~~s~~-~~~la~~~~dg~~~~~l~v~df~ 441 (445)
T 2ovr_B 391 TGEFIRNLVTL------ESGGSGGVVWRIRASNT-KLVCAVGSRNGTEETKLLVLDFD 441 (445)
T ss_dssp TCCEEEEEEEC------TTGGGTCEEEEEEECSS-EEEEEEECSSSSSCCEEEEEECC
T ss_pred CCceeeeeecc------ccCCCCceEEEEEecCC-EEEEEEcccCCCCccEEEEEECC
Confidence 88776655211 00112467888999998 999999999997 9999754
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-32 Score=290.00 Aligned_cols=291 Identities=13% Similarity=0.148 Sum_probs=230.6
Q ss_pred cccCcceeeecCc--ccccc-ccc---cceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccC---CCEEEEEeCC
Q 005352 201 DKQGEGERVRLNE--EDAMF-CSK---VQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPD---GQYLASAGDD 271 (701)
Q Consensus 201 ~~~~~~~~~~~~~--~~~~~-~~~---d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd---g~~Lasgs~D 271 (701)
.|...+.++.+++ ..+++ ++. |+.|+||++....... ....+|...|.+++|+|+ |.+|++|+.|
T Consensus 16 ~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d 89 (357)
T 3i2n_A 16 GFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKL------LREIEKAKPIKCGTFGATSLQQRYLATGDFG 89 (357)
T ss_dssp ECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEE------EEEEEESSCEEEEECTTCCTTTCCEEEEETT
T ss_pred CCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccc------eeeecccCcEEEEEEcCCCCCCceEEEecCC
Confidence 3666777776665 34443 554 8999999987543211 112369999999999998 7999999999
Q ss_pred CcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEc
Q 005352 272 GVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFH 351 (701)
Q Consensus 272 g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (701)
|.|++||+.+++ .++..+.
T Consensus 90 g~i~iwd~~~~~-------------------------------------------------------------~~~~~~~ 108 (357)
T 3i2n_A 90 GNLHIWNLEAPE-------------------------------------------------------------MPVYSVK 108 (357)
T ss_dssp SCEEEECTTSCS-------------------------------------------------------------SCSEEEC
T ss_pred CeEEEEeCCCCC-------------------------------------------------------------ccEEEEE
Confidence 999999997753 2456677
Q ss_pred CCccCeEEEEE------ecCC-eEEEEECCCcEEEEECCCCe-eeeeec-C----CCCeEEEE----EeeCCCCEEEEEE
Q 005352 352 GHSGEILDLSW------SKNN-YLLSASIDKTVRLWRVGNDH-CLRVFP-H----SNYVTCVH----FNPVDDNYFISGS 414 (701)
Q Consensus 352 ~h~~~I~~l~~------s~~~-~l~s~s~dg~I~iWd~~~~~-~~~~~~-h----~~~V~~l~----f~p~~~~~l~sgs 414 (701)
+|...|.+++| +|++ +|++++.|+.|++||+.+++ .+..+. | ...+.+++ |+| ++++|++++
T Consensus 109 ~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~l~~~~ 187 (357)
T 3i2n_A 109 GHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQ-EERVVCAGY 187 (357)
T ss_dssp CCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC--CCCEEEEEE
T ss_pred ecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCC-CCCEEEEEc
Confidence 89999999965 5677 99999999999999999887 666664 2 34899998 677 899999999
Q ss_pred cCCcEEEEeCCCCcEEEEecCCCcEEEEEEee---CCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeE
Q 005352 415 IDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRP---DGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITG 491 (701)
Q Consensus 415 ~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp---~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~ 491 (701)
.||.|++||+++++......+...|.+++|+| ++..|++++.||.|++||+++.+........ ....+...|++
T Consensus 188 ~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~~~~~v~~ 264 (357)
T 3i2n_A 188 DNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASV---SEKAHKSTVWQ 264 (357)
T ss_dssp TTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEE---EEECCSSCEEE
T ss_pred cCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeee---ccCCCcCCEEE
Confidence 99999999999999888888999999999999 9999999999999999999875443222111 12356788999
Q ss_pred EEEecCCCCEEEEEECCCcEEEEeCCcc-------------------ceeeecccCCCCeEEEEEecCCCEEE-EEeCCC
Q 005352 492 FQFLPQDSSKVMVSCADSQVRILQGPNV-------------------IGKYKGLRRSGNQLSACFTSDGKHIV-SAGEDS 551 (701)
Q Consensus 492 l~~~p~~~~~l~~~s~dg~I~iwd~~~~-------------------~~~~~~~~~~~~v~~l~~s~dg~~l~-sgs~Dg 551 (701)
++|+|++..++++++.|+.|++||+... ........|...|.+++|+|++++|+ +++.||
T Consensus 265 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~ 344 (357)
T 3i2n_A 265 VRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQ 344 (357)
T ss_dssp EEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTS
T ss_pred EEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCC
Confidence 9999943348999999999999998632 12233345889999999999999998 899999
Q ss_pred cEEEEeCCCCC
Q 005352 552 NVYMWNCIGHE 562 (701)
Q Consensus 552 ~I~iWd~~~~~ 562 (701)
.|++|++.+.+
T Consensus 345 ~i~iw~~~~~~ 355 (357)
T 3i2n_A 345 TVRVLIVTKLN 355 (357)
T ss_dssp EEEEEEECC--
T ss_pred cEEEEECCCcc
Confidence 99999998764
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-33 Score=288.54 Aligned_cols=250 Identities=17% Similarity=0.229 Sum_probs=199.0
Q ss_pred eeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEe
Q 005352 245 EIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSL 324 (701)
Q Consensus 245 ~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (701)
.+.+|.+.|++++|+|+|++||||+.|++|+|||+.++..
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~---------------------------------------- 47 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQ---------------------------------------- 47 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEE----------------------------------------
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCc----------------------------------------
Confidence 4678999999999999999999999999999999987531
Q ss_pred eecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecC--C-eEEEEECCCcEEEEECCCCe--eeeeec-CCCCeE
Q 005352 325 RRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN--N-YLLSASIDKTVRLWRVGNDH--CLRVFP-HSNYVT 398 (701)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~--~-~l~s~s~dg~I~iWd~~~~~--~~~~~~-h~~~V~ 398 (701)
..+..+.+|.+.|.+++|+++ + +|++++.|++|++||+++++ .+..+. |...|+
T Consensus 48 --------------------~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~ 107 (316)
T 3bg1_A 48 --------------------ILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVN 107 (316)
T ss_dssp --------------------EEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCC
T ss_pred --------------------EEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceE
Confidence 124567899999999999863 5 99999999999999998874 444444 899999
Q ss_pred EEEEeeCC--CCEEEEEEcCCcEEEEeCCCCcEE----EEecCCCcEEEEEEeeC-----------------CCeEEEEe
Q 005352 399 CVHFNPVD--DNYFISGSIDGKVRIWAVLSCHVV----DWVDIRQIVTAVCYRPD-----------------GQGGIVGS 455 (701)
Q Consensus 399 ~l~f~p~~--~~~l~sgs~dg~v~iwd~~~~~~~----~~~~~~~~i~~i~~sp~-----------------g~~l~~gs 455 (701)
+++|+| + +.+|++|+.|+.|++||++.+... ....|...+.+++|+|+ +++|++|+
T Consensus 108 ~v~~~p-~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs 186 (316)
T 3bg1_A 108 SVCWAP-HDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGG 186 (316)
T ss_dssp EEEECC-TTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCB
T ss_pred EEEECC-CCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEec
Confidence 999999 6 789999999999999999876322 23357788999999997 47899999
Q ss_pred cCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCC---CCEEEEEECCCcEEEEeCCccc----eeeecccC
Q 005352 456 MMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQD---SSKVMVSCADSQVRILQGPNVI----GKYKGLRR 528 (701)
Q Consensus 456 ~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~---~~~l~~~s~dg~I~iwd~~~~~----~~~~~~~~ 528 (701)
.|+.|++||++..... ........|...|.+++|+|+. +.+|++++.|++|+||++.... .......|
T Consensus 187 ~D~~v~lWd~~~~~~~-----~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~ 261 (316)
T 3bg1_A 187 CDNLIKLWKEEEDGQW-----KEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKF 261 (316)
T ss_dssp TTSBCCEEEECTTSCE-----EEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEEC
T ss_pred CCCeEEEEEeCCCCcc-----ceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcC
Confidence 9999999999754210 0111234577889999999953 3789999999999999987521 11112347
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 005352 529 SGNQLSACFTSDGKHIVSAGEDSNVYMWNCIG 560 (701)
Q Consensus 529 ~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~ 560 (701)
...|.+++|+|++++|++++.|+.|+||+...
T Consensus 262 ~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 262 NDVVWHVSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp SSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred CCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 88999999999999999999999999999753
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-32 Score=290.21 Aligned_cols=292 Identities=15% Similarity=0.124 Sum_probs=223.9
Q ss_pred eeeecccCcceeeecCc---cccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEcc-CCCEEEEEeCCC
Q 005352 197 ACVVDKQGEGERVRLNE---EDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSP-DGQYLASAGDDG 272 (701)
Q Consensus 197 ~~~~~~~~~~~~~~~~~---~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg 272 (701)
.....|...+.++.+++ ..+++++.|+.|+||++....... ...+.+|.+.|.+++|+| ++.+|++++.|+
T Consensus 67 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-----~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~ 141 (383)
T 3ei3_B 67 RTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTS-----FIQGMGPGDAITGMKFNQFNTNQLFVSSIRG 141 (383)
T ss_dssp EEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEE-----EECCCSTTCBEEEEEEETTEEEEEEEEETTT
T ss_pred EeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccce-----eeecCCcCCceeEEEeCCCCCCEEEEEeCCC
Confidence 34445777787776665 458889999999999986433211 112346999999999999 789999999999
Q ss_pred cEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcC
Q 005352 273 VVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHG 352 (701)
Q Consensus 273 ~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (701)
.|++||+.+.. +..+ ....+
T Consensus 142 ~i~iwd~~~~~-~~~~-----------------------------------------------------------~~~~~ 161 (383)
T 3ei3_B 142 ATTLRDFSGSV-IQVF-----------------------------------------------------------AKTDS 161 (383)
T ss_dssp EEEEEETTSCE-EEEE-----------------------------------------------------------ECCCC
T ss_pred EEEEEECCCCc-eEEE-----------------------------------------------------------eccCC
Confidence 99999987532 1111 11134
Q ss_pred CccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCC-EEEEEEcCCcEEEEeCCC---
Q 005352 353 HSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDN-YFISGSIDGKVRIWAVLS--- 426 (701)
Q Consensus 353 h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~-~l~sgs~dg~v~iwd~~~--- 426 (701)
|...|.+++|+|++ +|++++.|+.|++||+. ++++..+. |...|.+++|+| ++. +|++++.|+.|++||+++
T Consensus 162 ~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~h~~~v~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~ 239 (383)
T 3ei3_B 162 WDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GHEIFKEKLHKAKVTHAEFNP-RCDWLMATSSVDATVKLWDLRNIKD 239 (383)
T ss_dssp SSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SCEEEEEECSSSCEEEEEECS-SCTTEEEEEETTSEEEEEEGGGCCS
T ss_pred CCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CCEEEEeccCCCcEEEEEECC-CCCCEEEEEeCCCEEEEEeCCCCCc
Confidence 66889999999999 99999999999999994 55665555 999999999999 777 999999999999999998
Q ss_pred -CcEEEEecCCCcEEEEEEee-CCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCC----------CCCeeEEEE
Q 005352 427 -CHVVDWVDIRQIVTAVCYRP-DGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAP----------CKRITGFQF 494 (701)
Q Consensus 427 -~~~~~~~~~~~~i~~i~~sp-~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~----------~~~i~~l~~ 494 (701)
+..+....|...|++++|+| ++++|++++.|+.|++||+++............ ....+ ...+..+++
T Consensus 240 ~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~~~ 318 (383)
T 3ei3_B 240 KNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPH-RQFQHLTPIKATWHPMYDLIVAGR 318 (383)
T ss_dssp TTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCB-CCCTTSCCCCCEECSSSSEEEEEC
T ss_pred ccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccc-cccccccceEEeccCCCCceEEEe
Confidence 66777778999999999999 999999999999999999987665332211110 01111 233444566
Q ss_pred ecCCCCEEEEEECCCcEEEEeCCccceeee--cccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 005352 495 LPQDSSKVMVSCADSQVRILQGPNVIGKYK--GLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIG 560 (701)
Q Consensus 495 ~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~--~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~ 560 (701)
+| ++.+ +++.|+.|++||+.+...... .+.+...+..++|+|++++|++|+ ||.|+||++++
T Consensus 319 s~-dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 319 YP-DDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp BC-CTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred cC-Cccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 66 3444 667899999999976554443 333567788889999999999997 99999999875
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-32 Score=306.17 Aligned_cols=406 Identities=13% Similarity=0.099 Sum_probs=287.0
Q ss_pred ccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecC----eeeeeecCCCCC-CceeEEee--ccCCCcceeeeccccce
Q 005352 247 QAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVED----ERLTEVDIPEID-PSCIYFTV--NHLSELKPLFMDKEKIS 319 (701)
Q Consensus 247 ~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~----~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~ 319 (701)
..|.+.|.+++|+|+|++||+++ ++.|+||++.++ +....+..+... +.++.+.+ +.. .... ...
T Consensus 15 ~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~--~l~s-~~~---- 86 (615)
T 1pgu_A 15 STQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQ--YLCS-GDE---- 86 (615)
T ss_dssp CCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCC--EEEE-EET----
T ss_pred CCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCC--EEEE-ecC----
Confidence 35899999999999999999998 789999999988 777777766665 66666655 321 1111 111
Q ss_pred eeEEeeecCCccEEEcCCccc----cccCCCeEEEcCCccCeEEEEEecCC-eEEEEECC----CcEEEEECCCCeeeee
Q 005352 320 ILKSLRRTSESACVVFPPKVF----RILEKPLHEFHGHSGEILDLSWSKNN-YLLSASID----KTVRLWRVGNDHCLRV 390 (701)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~d----g~I~iWd~~~~~~~~~ 390 (701)
+..+.+++.... ....+.+..+.+|...|.+++|+|++ +|++++.+ +.|++|| .++.+..
T Consensus 87 ---------dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~ 155 (615)
T 1pgu_A 87 ---------SGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGE 155 (615)
T ss_dssp ---------TSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEE
T ss_pred ---------CCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCccee
Confidence 222222222100 00124566788899999999999999 89999887 6888888 5556666
Q ss_pred ec-CCCCeEEEEEeeCCCC-EEEEEEcCCcEEEEeCCCCcEEEEe-cCCC---cEEEEEEeeC-CCeEEEEecCCcEEEE
Q 005352 391 FP-HSNYVTCVHFNPVDDN-YFISGSIDGKVRIWAVLSCHVVDWV-DIRQ---IVTAVCYRPD-GQGGIVGSMMGDCRFY 463 (701)
Q Consensus 391 ~~-h~~~V~~l~f~p~~~~-~l~sgs~dg~v~iwd~~~~~~~~~~-~~~~---~i~~i~~sp~-g~~l~~gs~dg~v~i~ 463 (701)
+. |...|++++|+| ++. +|++++.|+.|++||+.+++.+..+ .|.. .|++++|+|+ +++|++++.||.|++|
T Consensus 156 ~~~~~~~v~~~~~~~-~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw 234 (615)
T 1pgu_A 156 VSGHSQRINACHLKQ-SRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCF 234 (615)
T ss_dssp CCSCSSCEEEEEECS-SSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEE
T ss_pred eecCCccEEEEEECC-CCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEE
Confidence 65 899999999999 666 8999999999999999998877544 4777 8999999999 9999999999999999
Q ss_pred ECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccC----CCCeEEEEEec
Q 005352 464 NVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRR----SGNQLSACFTS 539 (701)
Q Consensus 464 d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~----~~~v~~l~~s~ 539 (701)
|+.+++..... ......+...|.+++|+ ++.+|++++.|+.|++||+.+.........+ ...+.++.|.
T Consensus 235 d~~~~~~~~~~----~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~- 307 (615)
T 1pgu_A 235 DGKSGEFLKYI----EDDQEPVQGGIFALSWL--DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT- 307 (615)
T ss_dssp ETTTCCEEEEC----CBTTBCCCSCEEEEEES--SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-
T ss_pred ECCCCCEeEEe----cccccccCCceEEEEEc--CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-
Confidence 99887654321 00011577889999999 6899999999999999999865544433323 3677888885
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCCCCccc--ccccccccc----------------------ccCCceEEecCC------
Q 005352 540 DGKHIVSAGEDSNVYMWNCIGHEEPAHDQ--AKTIRSLER----------------------FTTNASIAIPWC------ 589 (701)
Q Consensus 540 dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~--~~~~~~~~~----------------------~~~~~~~a~~~~------ 589 (701)
++.+|++++.||.|++||+.+++...... ...+..+.. .+...+.++.|.
T Consensus 308 ~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~ 387 (615)
T 1pgu_A 308 GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYS 387 (615)
T ss_dssp ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCE
T ss_pred CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEE
Confidence 88899999999999999987643211000 000111000 001112222221
Q ss_pred -----CC-CCCC--------------------------------------------------------------------
Q 005352 590 -----GL-KCGN-------------------------------------------------------------------- 595 (701)
Q Consensus 590 -----~~-~~~~-------------------------------------------------------------------- 595 (701)
+. ..|+
T Consensus 388 ~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~ 467 (615)
T 1pgu_A 388 SISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGN 467 (615)
T ss_dssp EEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTS
T ss_pred EEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCC
Confidence 00 0111
Q ss_pred ------CCCCC---ccccCCCCCCCccccCCCccccCccccccCCCCcccCCCCccCCCCccccc-cccchhhhhhhhhc
Q 005352 596 ------AEKEP---QLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLSS-ASALHKSQYKFLKS 665 (701)
Q Consensus 596 ------~~~~~---~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 665 (701)
..... .........+..++|+|+ +..+++++.|+.+++|+.+....+..+.. | ..
T Consensus 468 ~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~----g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h-----------~~ 532 (615)
T 1pgu_A 468 TIQVFKLSDLEVSFDLKTPLRAKPSYISISPS----ETYIAAGDVMGKILLYDLQSREVKTSRWAFR-----------TS 532 (615)
T ss_dssp CEEEEETTEEEEEEECSSCCSSCEEEEEECTT----SSEEEEEETTSCEEEEETTTTEEEECCSCCC-----------SS
T ss_pred eEEEEECCCccccccccCCccCceEEEEECCC----CCEEEEcCCCCeEEEeeCCCCcceeEeecCC-----------CC
Confidence 11000 001112334667788987 77889999999999999988877766654 4 46
Q ss_pred ccccccccC----------CCccEEEEecCCCeEeEEeec
Q 005352 666 SCLCTTSSH----------AWGLVIVTAGWDGRIRSFLNY 695 (701)
Q Consensus 666 ~~~~~~~~~----------~~g~~ivTgg~DG~Irvw~~~ 695 (701)
.+.++++++ + +.+|++|+.||.|++|+.-
T Consensus 533 ~v~~~~~sp~~~~~~~~~~~-~~~l~~~~~dg~i~iw~~~ 571 (615)
T 1pgu_A 533 KINAISWKPAEKGANEEEIE-EDLVATGSLDTNIFIYSVK 571 (615)
T ss_dssp CEEEEEECCCC------CCS-CCEEEEEETTSCEEEEESS
T ss_pred ceeEEEEcCccccccccccC-CCEEEEEcCCCcEEEEECC
Confidence 788889998 7 9999999999999999854
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-32 Score=287.42 Aligned_cols=247 Identities=11% Similarity=0.208 Sum_probs=200.1
Q ss_pred eeccCCCcEEEEEEccCCCEE-EEEeC---CCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeecccccee
Q 005352 245 EIQAHDGSILTMKFSPDGQYL-ASAGD---DGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISI 320 (701)
Q Consensus 245 ~l~~H~~~I~~l~fspdg~~L-asgs~---Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (701)
.+++|.+.|++++|+|++..| ++|+. ||.|+|||+.+++...
T Consensus 13 ~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~---------------------------------- 58 (357)
T 3i2n_A 13 IQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKL---------------------------------- 58 (357)
T ss_dssp EEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEE----------------------------------
T ss_pred hccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccc----------------------------------
Confidence 457799999999999999655 56665 9999999998764211
Q ss_pred eEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecC---C-eEEEEECCCcEEEEECCCCe-eeeeec-CC
Q 005352 321 LKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN---N-YLLSASIDKTVRLWRVGNDH-CLRVFP-HS 394 (701)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~---~-~l~s~s~dg~I~iWd~~~~~-~~~~~~-h~ 394 (701)
....+|...|.+++|+|+ + +|++++.||.|++||+.+++ ++..+. |.
T Consensus 59 ---------------------------~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 111 (357)
T 3i2n_A 59 ---------------------------LREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHK 111 (357)
T ss_dssp ---------------------------EEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCS
T ss_pred ---------------------------eeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecc
Confidence 112368899999999998 5 99999999999999999887 777765 89
Q ss_pred CCeEEEEE------eeCCCCEEEEEEcCCcEEEEeCCCCc-EEEEe-cCC----CcEEEEE----EeeCCCeEEEEecCC
Q 005352 395 NYVTCVHF------NPVDDNYFISGSIDGKVRIWAVLSCH-VVDWV-DIR----QIVTAVC----YRPDGQGGIVGSMMG 458 (701)
Q Consensus 395 ~~V~~l~f------~p~~~~~l~sgs~dg~v~iwd~~~~~-~~~~~-~~~----~~i~~i~----~sp~g~~l~~gs~dg 458 (701)
..|.+++| +| ++++|++++.||.|++||+.+++ .+... .+. ..+.+++ |+|+++++++++.+|
T Consensus 112 ~~v~~~~~~~~~~~s~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~ 190 (357)
T 3i2n_A 112 EIINAIDGIGGLGIGE-GAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNG 190 (357)
T ss_dssp SCEEEEEEESGGGCC--CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTS
T ss_pred cceEEEeeccccccCC-CccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCC
Confidence 99999965 56 88999999999999999999876 34333 333 3788888 788999999999999
Q ss_pred cEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecC--CCCEEEEEECCCcEEEEeCCccceeeec-----ccCCCC
Q 005352 459 DCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQ--DSSKVMVSCADSQVRILQGPNVIGKYKG-----LRRSGN 531 (701)
Q Consensus 459 ~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~--~~~~l~~~s~dg~I~iwd~~~~~~~~~~-----~~~~~~ 531 (701)
.|++||+++.+.... ..+...|.+++|+|. ++.++++++.|+.|++||+......... ..|...
T Consensus 191 ~i~i~d~~~~~~~~~---------~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 261 (357)
T 3i2n_A 191 DIKLFDLRNMALRWE---------TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKST 261 (357)
T ss_dssp EEEEEETTTTEEEEE---------EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSC
T ss_pred eEEEEECccCceeee---------cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCC
Confidence 999999998875321 223467999999995 5789999999999999998754332221 258899
Q ss_pred eEEEEEecCCC-EEEEEeCCCcEEEEeCCCCC
Q 005352 532 QLSACFTSDGK-HIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 532 v~~l~~s~dg~-~l~sgs~Dg~I~iWd~~~~~ 562 (701)
|.+++|+|+++ +|++++.||.|++||+.++.
T Consensus 262 v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 293 (357)
T 3i2n_A 262 VWQVRHLPQNRELFLTAGGAGGLHLWKYEYPI 293 (357)
T ss_dssp EEEEEEETTEEEEEEEEETTSEEEEEEEECCS
T ss_pred EEEEEECCCCCcEEEEEeCCCcEEEeecCCCc
Confidence 99999999998 89999999999999998765
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-31 Score=285.04 Aligned_cols=254 Identities=19% Similarity=0.268 Sum_probs=214.2
Q ss_pred ceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEE
Q 005352 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (701)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (701)
+.+.+|.+.|++++|+|++++||+|+.||.|+||++.....
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~--------------------------------------- 45 (379)
T 3jrp_A 5 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH--------------------------------------- 45 (379)
T ss_dssp CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE---------------------------------------
T ss_pred EEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcc---------------------------------------
Confidence 45789999999999999999999999999999999974321
Q ss_pred eeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecC--C-eEEEEECCCcEEEEECCCCe--eeeeec-CCCCe
Q 005352 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN--N-YLLSASIDKTVRLWRVGNDH--CLRVFP-HSNYV 397 (701)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~--~-~l~s~s~dg~I~iWd~~~~~--~~~~~~-h~~~V 397 (701)
+.+..+.+|...|++++|+++ + +|++++.||.|++||+.+++ .+..+. |...|
T Consensus 46 ---------------------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v 104 (379)
T 3jrp_A 46 ---------------------KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASV 104 (379)
T ss_dssp ---------------------EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCE
T ss_pred ---------------------eeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcce
Confidence 234567789999999999876 6 99999999999999999986 555554 88999
Q ss_pred EEEEEeeCC--CCEEEEEEcCCcEEEEeCCCCc---EEEEecCCCcEEEEEEee-------------CCCeEEEEecCCc
Q 005352 398 TCVHFNPVD--DNYFISGSIDGKVRIWAVLSCH---VVDWVDIRQIVTAVCYRP-------------DGQGGIVGSMMGD 459 (701)
Q Consensus 398 ~~l~f~p~~--~~~l~sgs~dg~v~iwd~~~~~---~~~~~~~~~~i~~i~~sp-------------~g~~l~~gs~dg~ 459 (701)
.+++|+| + +.+|++++.|+.|++||+.+.. ......|...|++++|+| ++..|++++.||.
T Consensus 105 ~~~~~~~-~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~ 183 (379)
T 3jrp_A 105 NSVQWAP-HEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNL 183 (379)
T ss_dssp EEEEECC-GGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSC
T ss_pred EEEEeCC-CCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCe
Confidence 9999999 7 8999999999999999998873 345567889999999999 6999999999999
Q ss_pred EEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCC--CCEEEEEECCCcEEEEeCCccc-----eeeecccCCCCe
Q 005352 460 CRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQD--SSKVMVSCADSQVRILQGPNVI-----GKYKGLRRSGNQ 532 (701)
Q Consensus 460 v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~--~~~l~~~s~dg~I~iwd~~~~~-----~~~~~~~~~~~v 532 (701)
|++||+++....... ......|...|.+++|+|+. +.+|++++.|+.|++||+.... .......+...|
T Consensus 184 i~i~d~~~~~~~~~~----~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v 259 (379)
T 3jrp_A 184 VKIWKYNSDAQTYVL----ESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVL 259 (379)
T ss_dssp EEEEEEETTTTEEEE----EEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCE
T ss_pred EEEEEecCCCcceee----EEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcE
Confidence 999999876533211 11234566889999999943 8999999999999999988642 333334478899
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 533 LSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 533 ~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
.+++|+|++++|++++.||.|++|++....
T Consensus 260 ~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 260 WRASWSLSGNVLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp EEEEECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred EEEEEcCCCCEEEEecCCCcEEEEeCCCCC
Confidence 999999999999999999999999988643
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-32 Score=295.09 Aligned_cols=306 Identities=15% Similarity=0.189 Sum_probs=221.3
Q ss_pred CeEEEcCCccCeEEEEEecCC--eEEEEECCCcEEEEECCCCeeeeee---cCCCCeEEEEEeeCCCCEEEEEEcCCcEE
Q 005352 346 PLHEFHGHSGEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVF---PHSNYVTCVHFNPVDDNYFISGSIDGKVR 420 (701)
Q Consensus 346 ~~~~~~~h~~~I~~l~~s~~~--~l~s~s~dg~I~iWd~~~~~~~~~~---~h~~~V~~l~f~p~~~~~l~sgs~dg~v~ 420 (701)
......+|...|++|+|+|.+ +|++|+.||+|+|||+.+++....+ .|.+.|++|+|+|.++++|++|+.||+|+
T Consensus 111 ~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~ 190 (435)
T 4e54_B 111 ILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTR 190 (435)
T ss_dssp SCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEE
T ss_pred ecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEE
Confidence 344567899999999999954 8999999999999999877644433 49999999999997789999999999999
Q ss_pred EEeCCCCcEEEEecC---CCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecC
Q 005352 421 IWAVLSCHVVDWVDI---RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQ 497 (701)
Q Consensus 421 iwd~~~~~~~~~~~~---~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~ 497 (701)
+||++++.......+ ...+.+++|+|++++|++|+.||.|++||++..... ....|...|++++|+|+
T Consensus 191 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~---------~~~~h~~~v~~v~~~p~ 261 (435)
T 4e54_B 191 LQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELW---------NLRMHKKKVTHVALNPC 261 (435)
T ss_dssp EEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCC---------CSBCCSSCEEEEEECTT
T ss_pred EeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeE---------EEecccceEEeeeecCC
Confidence 999987765544432 345789999999999999999999999999764321 23456788999999997
Q ss_pred CCCEEEEEECCCcEEEEeCCcccee---eecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCCCCccccccccc
Q 005352 498 DSSKVMVSCADSQVRILQGPNVIGK---YKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRS 574 (701)
Q Consensus 498 ~~~~l~~~s~dg~I~iwd~~~~~~~---~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~ 574 (701)
+..++++++.|+.|+|||++..... .....|...|++++|+|+|++|++++.||.|+|||+.++..+..........
T Consensus 262 ~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~ 341 (435)
T 4e54_B 262 CDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRH 341 (435)
T ss_dssp CSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCC
T ss_pred CceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccc
Confidence 6778999999999999998754332 2234588999999999999999999999999999998876322111110000
Q ss_pred cccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCCcccCCCCccCCCCcccccccc
Q 005352 575 LERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLSSASA 654 (701)
Q Consensus 575 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~~~~ 654 (701)
.. ....+...|.+ ......+.+++++ ...+..+..++.+++|+......+..+..+
T Consensus 342 ~~---~~~~~~~~~~~----------------~~~~~~~~~~~d~---~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~-- 397 (435)
T 4e54_B 342 FQ---HLTPIKAAWHP----------------RYNLIVVGRYPDP---NFKSCTPYELRTIDVFDGNSGKMMCQLYDP-- 397 (435)
T ss_dssp CS---SSCCCBCEECS----------------SSSCEEEECCCCT---TSCCSSTTCCCCEEEECSSSCCEEEEECCS--
T ss_pred cc---cceeEEEEEcC----------------CCCEEEEEEcCCC---CeEEEEecCCCEEEEEECCCCcEEEEEeCC--
Confidence 00 00001111111 1111222334441 222334455667999999888776554322
Q ss_pred chhhhhhhhhcccccc-cccCCCccEEEEecCCCeEeEEee
Q 005352 655 LHKSQYKFLKSSCLCT-TSSHAWGLVIVTAGWDGRIRSFLN 694 (701)
Q Consensus 655 ~~~~~~~~~~~~~~~~-~~~~~~g~~ivTgg~DG~Irvw~~ 694 (701)
+...+.++ +++++ |.+|++|+ |+.|++|+-
T Consensus 398 --------~~~~v~s~~~fspd-g~~lasg~-d~~i~iW~~ 428 (435)
T 4e54_B 398 --------ESSGISSLNEFNPM-GDTLASAM-GYHILIWSQ 428 (435)
T ss_dssp --------SCCCCCCEEEECTT-SSCEEEEC-SSEEEECCC
T ss_pred --------CCCcEEEEEEECCC-CCEEEEEc-CCcEEEEEC
Confidence 12356665 57787 99999886 889999974
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-32 Score=287.72 Aligned_cols=292 Identities=13% Similarity=0.159 Sum_probs=221.4
Q ss_pred ceeccCCCcEEEEEEccCC-CEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeE
Q 005352 244 QEIQAHDGSILTMKFSPDG-QYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (701)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg-~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (701)
..+.+|.+.|++++|+|++ ++||+|+.||.|+|||+.+++....
T Consensus 67 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~----------------------------------- 111 (383)
T 3ei3_B 67 RTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSF----------------------------------- 111 (383)
T ss_dssp EEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEE-----------------------------------
T ss_pred EeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCccccee-----------------------------------
Confidence 3567899999999999999 9999999999999999986642211
Q ss_pred EeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEec-CC-eEEEEECCCcEEEEECCCCeeeeeec---CCCCe
Q 005352 323 SLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK-NN-YLLSASIDKTVRLWRVGNDHCLRVFP---HSNYV 397 (701)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~-~~-~l~s~s~dg~I~iWd~~~~~~~~~~~---h~~~V 397 (701)
..+.+|...|.+++|+| ++ +|++++.|+.|++||+.......... +...|
T Consensus 112 -------------------------~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v 166 (383)
T 3ei3_B 112 -------------------------IQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWY 166 (383)
T ss_dssp -------------------------ECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCCCSSCCE
T ss_pred -------------------------eecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccCCCCCCe
Confidence 11236999999999999 55 99999999999999999644333333 44789
Q ss_pred EEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCC-eEEEEecCCcEEEEECCCCeeeeeeeE
Q 005352 398 TCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQ-GGIVGSMMGDCRFYNVSDNHLELDAEI 476 (701)
Q Consensus 398 ~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~-~l~~gs~dg~v~i~d~~~~~~~~~~~~ 476 (701)
.+++|+| ++++|++++.|+.|++||++......+..|...|.+++|+|+++ .|++++.|+.|++||+++.+..... .
T Consensus 167 ~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~ 244 (383)
T 3ei3_B 167 CCVDVSV-SRQMLATGDSTGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSY-I 244 (383)
T ss_dssp EEEEEET-TTTEEEEEETTSEEEEEETTSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCE-E
T ss_pred EEEEECC-CCCEEEEECCCCCEEEEECCCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccce-E
Confidence 9999999 99999999999999999997655667778999999999999999 8999999999999999873211100 0
Q ss_pred EeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCcccee--eeccc-----C----------CCCeEEEEEec
Q 005352 477 CVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGK--YKGLR-----R----------SGNQLSACFTS 539 (701)
Q Consensus 477 ~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~--~~~~~-----~----------~~~v~~l~~s~ 539 (701)
.. ..+...|.+++|+|.++.+|++++.|+.|++||+.+.... +..+. | ...+..++|+|
T Consensus 245 ~~----~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~ 320 (383)
T 3ei3_B 245 AE----MPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYP 320 (383)
T ss_dssp EE----EECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBC
T ss_pred EE----ecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecC
Confidence 01 1256789999999966889999999999999998754332 22211 1 23455577777
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCc
Q 005352 540 DGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPAR 619 (701)
Q Consensus 540 dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~ 619 (701)
++++ +|+.||.|++||+.+++.. ..+... .....+..++|+|+
T Consensus 321 dg~~--s~s~d~~i~iwd~~~~~~~--------~~l~~~--------------------------~~~~~~~~~~~s~~- 363 (383)
T 3ei3_B 321 DDQL--LLNDKRTIDIYDANSGGLV--------HQLRDP--------------------------NAAGIISLNKFSPT- 363 (383)
T ss_dssp CTTT--CTTCCCCEEEEETTTCCEE--------EEECBT--------------------------TBCSCCCEEEECTT-
T ss_pred Cccc--ccCCCCeEEEEecCCCcee--------eeecCC--------------------------CCCceEEEEEEecC-
Confidence 7776 7789999999999887621 111000 00122344578887
Q ss_pred cccCccccccCCCCcccCCCCcc
Q 005352 620 FSLGQEYVFESFPKGCATWPEEK 642 (701)
Q Consensus 620 ~~~~~~~~~~s~d~~~~~W~~~~ 642 (701)
+..+++++ |+.+++|+.++
T Consensus 364 ---g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 364 ---GDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp ---SSEEEEEE-TTEEEEEECC-
T ss_pred ---ccEEEEec-CCcEEEEecCC
Confidence 56777775 99999999754
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-31 Score=278.09 Aligned_cols=282 Identities=15% Similarity=0.204 Sum_probs=235.3
Q ss_pred ecccCcceeeec--CccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEE
Q 005352 200 VDKQGEGERVRL--NEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLW 277 (701)
Q Consensus 200 ~~~~~~~~~~~~--~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iW 277 (701)
..|...+.++.+ ++..+++++.|+.|+||+..... ....+.+|.+.|.+++|+|++++|++++.||.|++|
T Consensus 29 ~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~-------~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw 101 (369)
T 3zwl_B 29 TGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGE-------RLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLW 101 (369)
T ss_dssp ECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCC-------EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEE
T ss_pred EEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCch-------hhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 456777776655 55678889999999999875432 224577899999999999999999999999999999
Q ss_pred EeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCe
Q 005352 278 QVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEI 357 (701)
Q Consensus 278 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I 357 (701)
|+.+++.+ ..+. |...|
T Consensus 102 d~~~~~~~--------------------------------------------------------------~~~~-~~~~v 118 (369)
T 3zwl_B 102 DVSNGQCV--------------------------------------------------------------ATWK-SPVPV 118 (369)
T ss_dssp ETTTCCEE--------------------------------------------------------------EEEE-CSSCE
T ss_pred ECCCCcEE--------------------------------------------------------------EEee-cCCCe
Confidence 99876532 2223 67789
Q ss_pred EEEEEecCC-eEEEEECC-----CcEEEEECCCCeee-----------eee-cCCC--CeEEEEEeeCCCCEEEEEEcCC
Q 005352 358 LDLSWSKNN-YLLSASID-----KTVRLWRVGNDHCL-----------RVF-PHSN--YVTCVHFNPVDDNYFISGSIDG 417 (701)
Q Consensus 358 ~~l~~s~~~-~l~s~s~d-----g~I~iWd~~~~~~~-----------~~~-~h~~--~V~~l~f~p~~~~~l~sgs~dg 417 (701)
.+++|+|++ +|++++.+ +.|++||+...... ..+ .|.. .+.+++|+| ++++|++++.||
T Consensus 119 ~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg 197 (369)
T 3zwl_B 119 KRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWST-KGKYIIAGHKDG 197 (369)
T ss_dssp EEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECG-GGCEEEEEETTS
T ss_pred EEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcC-CCCEEEEEcCCC
Confidence 999999999 99999998 99999999766422 111 2444 899999999 999999999999
Q ss_pred cEEEEeCCC-CcEE-EEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEe
Q 005352 418 KVRIWAVLS-CHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFL 495 (701)
Q Consensus 418 ~v~iwd~~~-~~~~-~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~ 495 (701)
.|++||+++ .+.+ ....+...|.+++|+|++++|++++.||.|++||+.+.+...... +...+..++|+
T Consensus 198 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~---------~~~~~~~~~~~ 268 (369)
T 3zwl_B 198 KISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE---------TDCPLNTAVIT 268 (369)
T ss_dssp EEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE---------CSSCEEEEEEC
T ss_pred EEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec---------CCCCceeEEec
Confidence 999999998 5555 455688999999999999999999999999999999876543321 44679999999
Q ss_pred cCCCCEEEEEECCC--------------cEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 005352 496 PQDSSKVMVSCADS--------------QVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGH 561 (701)
Q Consensus 496 p~~~~~l~~~s~dg--------------~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~ 561 (701)
| ++.++++++.++ .+++||............|...|.+++|+|++++|++++.||.|++|+++++
T Consensus 269 ~-~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 269 P-LKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKS 347 (369)
T ss_dssp S-SSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHH
T ss_pred C-CCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECccc
Confidence 9 789999999888 8999999877766666668999999999999999999999999999999875
Q ss_pred C
Q 005352 562 E 562 (701)
Q Consensus 562 ~ 562 (701)
.
T Consensus 348 ~ 348 (369)
T 3zwl_B 348 Y 348 (369)
T ss_dssp H
T ss_pred c
Confidence 4
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-32 Score=288.82 Aligned_cols=309 Identities=9% Similarity=0.015 Sum_probs=218.1
Q ss_pred eeecCccccccccc-------cceEEEEEccCccchhhh-cc--cCceeccCCCcEEEEEEccCCCEEEEEe--------
Q 005352 208 RVRLNEEDAMFCSK-------VQRVKVYHCKKRSKELSA-LY--KGQEIQAHDGSILTMKFSPDGQYLASAG-------- 269 (701)
Q Consensus 208 ~~~~~~~~~~~~~~-------d~~v~vw~~~~~~~~~~~-~~--~~~~l~~H~~~I~~l~fspdg~~Lasgs-------- 269 (701)
++.+++..+++|+. ++.|++|++......... .. ....+.+|...|.+++++ +..+++|.
T Consensus 21 ~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~~~~~~l~ 98 (365)
T 4h5i_A 21 KFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCNENSTKIT 98 (365)
T ss_dssp EEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECCCCHHHHH
T ss_pred EEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEECCCccEEE
Confidence 44555556666643 456999998654432221 11 122567899999888764 55666654
Q ss_pred ---CCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCC
Q 005352 270 ---DDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKP 346 (701)
Q Consensus 270 ---~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (701)
.|+.+++|++.......... .. ..
T Consensus 99 s~~~d~~~r~~~~~~~~~~~~~~--------------------------------~~---------------------~~ 125 (365)
T 4h5i_A 99 QGKGNKHLRKFKYDKVNDQLEFL--------------------------------TS---------------------VD 125 (365)
T ss_dssp HTSCCCCEEEEEEETTTTEEEEE--------------------------------EE---------------------EC
T ss_pred EecCCCcEEEEEecCCCceEEEe--------------------------------ee---------------------ec
Confidence 46778888876543111000 00 00
Q ss_pred eEEEcCCccCeEEEEEecCC-eEEE--EECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEe
Q 005352 347 LHEFHGHSGEILDLSWSKNN-YLLS--ASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWA 423 (701)
Q Consensus 347 ~~~~~~h~~~I~~l~~s~~~-~l~s--~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd 423 (701)
......+...+.+++|+|+| ++++ ++.|++|+|||+.+++++..+.|...|.+++|+| ++++|++++. +.+++|+
T Consensus 126 ~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fsp-dg~~l~s~s~-~~~~~~~ 203 (365)
T 4h5i_A 126 FDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVKDLHFST-DGKVVAYITG-SSLEVIS 203 (365)
T ss_dssp SSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCCEEEECT-TSSEEEEECS-SCEEEEE
T ss_pred eeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceEEEEEcc-CCceEEeccc-eeEEEEE
Confidence 01113455678999999999 6654 4478999999999999999999999999999999 9999999985 5567777
Q ss_pred CCCCcEEE---EecCCCcEEEEEEeeCCCeEEEEecCC----cEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEec
Q 005352 424 VLSCHVVD---WVDIRQIVTAVCYRPDGQGGIVGSMMG----DCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLP 496 (701)
Q Consensus 424 ~~~~~~~~---~~~~~~~i~~i~~sp~g~~l~~gs~dg----~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p 496 (701)
..+++.+. ...|...|.+++|+|+++.+++++.++ .+++|++............ ...+...|++++|+|
T Consensus 204 ~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~----~~~~~~~V~~~~~Sp 279 (365)
T 4h5i_A 204 TVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQ----VTNRFKGITSMDVDM 279 (365)
T ss_dssp TTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEE----EESSCSCEEEEEECT
T ss_pred eccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeee----ecCCCCCeEeEEECC
Confidence 77766542 234677899999999999999999887 5888998776544322211 234567899999999
Q ss_pred CCCCEEEEEECCCcEEEEeCCccceeeec-ccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCCCCcccccccccc
Q 005352 497 QDSSKVMVSCADSQVRILQGPNVIGKYKG-LRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSL 575 (701)
Q Consensus 497 ~~~~~l~~~s~dg~I~iwd~~~~~~~~~~-~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~ 575 (701)
++.+|++|+.|+.|+|||+.+....... ..|...|++++|+|||++|||||.|++|+||++...........+.+..+
T Consensus 280 -dg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~~~~~~s~~~~l~kl 358 (365)
T 4h5i_A 280 -KGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLNYANYTSMKQKISKL 358 (365)
T ss_dssp -TSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTTTTC-----------
T ss_pred -CCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCCCcCccCccccceee
Confidence 7999999999999999999887665543 45999999999999999999999999999999976554333444455555
Q ss_pred ccc
Q 005352 576 ERF 578 (701)
Q Consensus 576 ~~~ 578 (701)
|+.
T Consensus 359 ~~~ 361 (365)
T 4h5i_A 359 EHH 361 (365)
T ss_dssp ---
T ss_pred ecc
Confidence 544
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-32 Score=297.60 Aligned_cols=293 Identities=13% Similarity=0.181 Sum_probs=219.1
Q ss_pred eeccCCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEE
Q 005352 245 EIQAHDGSILTMKFSP-DGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (701)
Q Consensus 245 ~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (701)
...+|...|+||+|+| ++.+||+|+.||.|+|||+.+++.
T Consensus 114 ~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~--------------------------------------- 154 (435)
T 4e54_B 114 KAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDK--------------------------------------- 154 (435)
T ss_dssp EEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSC---------------------------------------
T ss_pred cCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCc---------------------------------------
Confidence 4567999999999999 567999999999999999876542
Q ss_pred eeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEec-CC-eEEEEECCCcEEEEECCCCeeeeeec---CCCCeE
Q 005352 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK-NN-YLLSASIDKTVRLWRVGNDHCLRVFP---HSNYVT 398 (701)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~-~~-~l~s~s~dg~I~iWd~~~~~~~~~~~---h~~~V~ 398 (701)
.....+.+|.+.|++|+|+| ++ +|++++.||+|++||++++....... +...+.
T Consensus 155 ---------------------~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~ 213 (435)
T 4e54_B 155 ---------------------PTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFC 213 (435)
T ss_dssp ---------------------CEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCC
T ss_pred ---------------------eeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEE
Confidence 11233468999999999998 45 99999999999999998776544443 345688
Q ss_pred EEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCC-eEEEEecCCcEEEEECCCCeeeeeeeEE
Q 005352 399 CVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQ-GGIVGSMMGDCRFYNVSDNHLELDAEIC 477 (701)
Q Consensus 399 ~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~-~l~~gs~dg~v~i~d~~~~~~~~~~~~~ 477 (701)
+++|+| ++.+|++|+.||.|++||++...+..+..|...|++++|+|++. +|++|+.|+.|++||+++.......
T Consensus 214 ~~~~~~-~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~--- 289 (435)
T 4e54_B 214 SLDVSA-SSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASF--- 289 (435)
T ss_dssp CEEEET-TTTEEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCC---
T ss_pred EEEECC-CCCEEEEEeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceE---
Confidence 999999 99999999999999999998777667778999999999999886 6778999999999999876532211
Q ss_pred eecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCC------CCeEEEEEecCCCEEEEEe---
Q 005352 478 VHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRS------GNQLSACFTSDGKHIVSAG--- 548 (701)
Q Consensus 478 ~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~------~~v~~l~~s~dg~~l~sgs--- 548 (701)
.....|...|++++|+| ++.+|++++.|+.|+|||+.+.........|. ..+..+.|+|++.++++++
T Consensus 290 --~~~~~h~~~v~~~~~sp-dg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 366 (435)
T 4e54_B 290 --LYSLPHRHPVNAACFSP-DGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPD 366 (435)
T ss_dssp --SBCCBCSSCEEECCBCT-TSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCC
T ss_pred --EEeeeccccccceeECC-CCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCC
Confidence 11245678899999999 78999999999999999998654433322221 2334566777777777664
Q ss_pred ---------CCCcEEEEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCcc-ccCCC
Q 005352 549 ---------EDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENL-AFAPA 618 (701)
Q Consensus 549 ---------~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~sp~ 618 (701)
.++.|++||..+++... .+ . ..+...+..+ +|+|+
T Consensus 367 ~~~~~~~~~~~~~i~iwd~~~g~~~~--------~l------------~---------------~~~~~~v~s~~~fspd 411 (435)
T 4e54_B 367 PNFKSCTPYELRTIDVFDGNSGKMMC--------QL------------Y---------------DPESSGISSLNEFNPM 411 (435)
T ss_dssp TTSCCSSTTCCCCEEEECSSSCCEEE--------EE------------C---------------CSSCCCCCCEEEECTT
T ss_pred CCeEEEEecCCCEEEEEECCCCcEEE--------EE------------e---------------CCCCCcEEEEEEECCC
Confidence 23578999987775210 00 0 0112234444 58887
Q ss_pred ccccCccccccCCCCcccCCCCccCC
Q 005352 619 RFSLGQEYVFESFPKGCATWPEEKLP 644 (701)
Q Consensus 619 ~~~~~~~~~~~s~d~~~~~W~~~~~~ 644 (701)
+..++++ .|+.|++|+.+...
T Consensus 412 ----g~~lasg-~d~~i~iW~~~~gk 432 (435)
T 4e54_B 412 ----GDTLASA-MGYHILIWSQQEAR 432 (435)
T ss_dssp ----SSCEEEE-CSSEEEECCCC---
T ss_pred ----CCEEEEE-cCCcEEEEECCcCe
Confidence 5555655 58899999987764
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-31 Score=286.97 Aligned_cols=277 Identities=19% Similarity=0.296 Sum_probs=227.1
Q ss_pred ceeeecCccccccccccceEEEEEccCccchhhhcccCceec-cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCee
Q 005352 206 GERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQ-AHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDER 284 (701)
Q Consensus 206 ~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~-~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~ 284 (701)
...+.++++.+++++.++.|+||+....... ..+. .|.+.|++++|+|++++|++|+.||.|++||+.+++
T Consensus 96 ~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~-------~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~- 167 (401)
T 4aez_A 96 LNLLDWSNLNVVAVALERNVYVWNADSGSVS-------ALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQT- 167 (401)
T ss_dssp CBCEEECTTSEEEEEETTEEEEEETTTCCEE-------EEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-
T ss_pred EEEEeecCCCEEEEECCCeEEEeeCCCCcEe-------EeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCe-
Confidence 4567788889999999999999998654321 1122 389999999999999999999999999999997764
Q ss_pred eeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEec
Q 005352 285 LTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK 364 (701)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~ 364 (701)
.+..+.+|...|.+++|++
T Consensus 168 -------------------------------------------------------------~~~~~~~~~~~v~~~~~~~ 186 (401)
T 4aez_A 168 -------------------------------------------------------------KLRTMAGHQARVGCLSWNR 186 (401)
T ss_dssp -------------------------------------------------------------EEEEECCCSSCEEEEEEET
T ss_pred -------------------------------------------------------------EEEEecCCCCceEEEEECC
Confidence 3445668999999999943
Q ss_pred CCeEEEEECCCcEEEEECC-CCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEE-EecCCCcEEE
Q 005352 365 NNYLLSASIDKTVRLWRVG-NDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD-WVDIRQIVTA 441 (701)
Q Consensus 365 ~~~l~s~s~dg~I~iWd~~-~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~-~~~~~~~i~~ 441 (701)
.+|++++.||.|++||++ ....+..+. |...|.+++|+| ++++|++|+.|+.|++||+++++.+. ...|...|.+
T Consensus 187 -~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~ 264 (401)
T 4aez_A 187 -HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRS-DGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKA 264 (401)
T ss_dssp -TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCE
T ss_pred -CEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcC-CCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEE
Confidence 399999999999999998 455555554 999999999999 99999999999999999999988774 4468899999
Q ss_pred EEEeeCCCeE-EEEe--cCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEE--CCCcEEEEeC
Q 005352 442 VCYRPDGQGG-IVGS--MMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSC--ADSQVRILQG 516 (701)
Q Consensus 442 i~~sp~g~~l-~~gs--~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s--~dg~I~iwd~ 516 (701)
++|+|++..+ ++++ .|+.|++||+.+++..... .+...|.+++|+| ++..+++++ .|+.|++||+
T Consensus 265 ~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~---------~~~~~v~~~~~s~-~~~~l~~~~g~~dg~i~v~~~ 334 (401)
T 4aez_A 265 VAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTV---------DAGSQVTSLIWSP-HSKEIMSTHGFPDNNLSIWSY 334 (401)
T ss_dssp EEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEE---------ECSSCEEEEEECS-SSSEEEEEECTTTCEEEEEEE
T ss_pred EEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEE---------eCCCcEEEEEECC-CCCeEEEEeecCCCcEEEEec
Confidence 9999977554 4444 6999999999987654322 1336799999999 678888854 7999999998
Q ss_pred Cc--cceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCC
Q 005352 517 PN--VIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEE 563 (701)
Q Consensus 517 ~~--~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~ 563 (701)
.+ .........|...|.+++|+|++++|++++.||.|++|++.+++.
T Consensus 335 ~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~ 383 (401)
T 4aez_A 335 SSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDH 383 (401)
T ss_dssp ETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC---
T ss_pred CCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcc
Confidence 76 444444556889999999999999999999999999999998874
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-32 Score=295.41 Aligned_cols=366 Identities=17% Similarity=0.197 Sum_probs=239.8
Q ss_pred ccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCce
Q 005352 219 CSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSP-DGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSC 297 (701)
Q Consensus 219 ~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~ 297 (701)
...++.++||++.... ....+++|.+.|++|+|+| ++++||+|+.||.|++||+.+++....+....
T Consensus 19 ~~~~~~~~v~~~~~~~-------~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~----- 86 (408)
T 4a11_B 19 RRAESTRRVLGLELNK-------DRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKA----- 86 (408)
T ss_dssp HHHHHHHHHHTEEECT-------TEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECE-----
T ss_pred eeccCcceeeccccCc-------ceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccc-----
Confidence 3455667777654321 1234677999999999999 99999999999999999998765332211000
Q ss_pred eEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEec-CC-eEEEEECCC
Q 005352 298 IYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK-NN-YLLSASIDK 375 (701)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~-~~-~l~s~s~dg 375 (701)
... .......+|...|.+++|+| ++ +|++++.|+
T Consensus 87 -----------------------~~~---------------------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~ 122 (408)
T 4a11_B 87 -----------------------VCS---------------------IGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDK 122 (408)
T ss_dssp -----------------------EEE---------------------ECTTCTTCCSSCEEEEEECTTCTTCEEEEETTS
T ss_pred -----------------------ccc---------------------ccccccccCCCcEEEEEEccCCCcEEEEEeCCC
Confidence 000 00011246999999999999 55 999999999
Q ss_pred cEEEEECCCCeeeeeecCCCCeEEEEEeeC--CCCEEEEEEcCCcEEEEeCCCCcEEE-EecCCCcEEEEEEeeCCCe-E
Q 005352 376 TVRLWRVGNDHCLRVFPHSNYVTCVHFNPV--DDNYFISGSIDGKVRIWAVLSCHVVD-WVDIRQIVTAVCYRPDGQG-G 451 (701)
Q Consensus 376 ~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~--~~~~l~sgs~dg~v~iwd~~~~~~~~-~~~~~~~i~~i~~sp~g~~-l 451 (701)
.|++||+.+++.+..+.+...+.++.|+|. ++.++++++.|+.|++||+++++.+. +..|...|++++|+|+++. |
T Consensus 123 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll 202 (408)
T 4a11_B 123 TLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYIL 202 (408)
T ss_dssp EEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEE
T ss_pred eEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEE
Confidence 999999999999999999999999999983 23499999999999999999887664 4458899999999999985 8
Q ss_pred EEEecCCcEEEEECCCCeeeeeee--------EEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceee
Q 005352 452 IVGSMMGDCRFYNVSDNHLELDAE--------ICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKY 523 (701)
Q Consensus 452 ~~gs~dg~v~i~d~~~~~~~~~~~--------~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~ 523 (701)
++++.||.|++||++......... .........+...|.+++|+| ++.+|++++.|+.|++||+.+.....
T Consensus 203 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~ 281 (408)
T 4a11_B 203 ATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTS-DGLHLLTVGTDNRMRLWNSSNGENTL 281 (408)
T ss_dssp EEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCBCC
T ss_pred EEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcC-CCCEEEEecCCCeEEEEECCCCccce
Confidence 899999999999998764221100 001111245778899999999 78999999999999999998654433
Q ss_pred eccc-----CCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCC
Q 005352 524 KGLR-----RSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEK 598 (701)
Q Consensus 524 ~~~~-----~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 598 (701)
.... ....+........+..+++++.|+.|++||+.+++.. ..+
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~--------~~~----------------------- 330 (408)
T 4a11_B 282 VNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQI--------TML----------------------- 330 (408)
T ss_dssp CCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEE--------EEE-----------------------
T ss_pred eccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcce--------eee-----------------------
Confidence 2211 1111222222334556777788999999999877621 111
Q ss_pred CCccccCCCCCCCccccCCCccccCccccccCCCCcccCCCCccCCCCccccccccchhhhhhhhhcccccccccCCCcc
Q 005352 599 EPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGL 678 (701)
Q Consensus 599 ~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 678 (701)
..+...+..++|+|+ +..+++++.|+.+++|+.+....+....... .. ....+....
T Consensus 331 -----~~~~~~v~~~~~s~~----~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~------------~~--~~~~~~~~~ 387 (408)
T 4a11_B 331 -----KGHYKTVDCCVFQSN----FQELYSGSRDCNILAWVPSLYEPVPDDDETT------------TK--SQLNPAFED 387 (408)
T ss_dssp -----CCCSSCEEEEEEETT----TTEEEEEETTSCEEEEEECC------------------------------------
T ss_pred -----ccCCCeEEEEEEcCC----CCEEEEECCCCeEEEEeCCCCCccCCCCceE------------ec--cccccccce
Confidence 011334666788886 6778899999999999998887655442220 01 111222255
Q ss_pred EEEEecCCCeEeEEeec
Q 005352 679 VIVTAGWDGRIRSFLNY 695 (701)
Q Consensus 679 ~ivTgg~DG~Irvw~~~ 695 (701)
...+++.||.|++|.+-
T Consensus 388 ~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 388 AWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp -----------------
T ss_pred eecccCccCceeecCCc
Confidence 67788999999999864
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-30 Score=286.08 Aligned_cols=279 Identities=18% Similarity=0.313 Sum_probs=233.5
Q ss_pred eeecccCc-ceeeecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEE
Q 005352 198 CVVDKQGE-GERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRL 276 (701)
Q Consensus 198 ~~~~~~~~-~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~i 276 (701)
.+..|... +.++.++++.+++|+.|+.|++|+..... ....+.+|.+.|++++|+|++ +|++|+.||+|++
T Consensus 116 ~l~~h~~~v~~~~~~~~~~l~sgs~dg~i~vwd~~~~~-------~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~v 187 (464)
T 3v7d_B 116 TLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKK-------FLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRV 187 (464)
T ss_dssp EEECCSSSCEEEEEEETTEEEEEETTSCEEEEETTTTE-------EEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEE
T ss_pred EEcCCCCCcEEEEEECCCEEEEEcCCCcEEEEECCCCc-------EEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEE
Confidence 33455555 36788899999999999999999975432 224577899999999999988 9999999999999
Q ss_pred EEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccC
Q 005352 277 WQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGE 356 (701)
Q Consensus 277 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 356 (701)
||+.+++. +..+.+|...
T Consensus 188 wd~~~~~~--------------------------------------------------------------~~~~~~h~~~ 205 (464)
T 3v7d_B 188 WDIKKGCC--------------------------------------------------------------THVFEGHNST 205 (464)
T ss_dssp EETTTTEE--------------------------------------------------------------EEEECCCSSC
T ss_pred EECCCCcE--------------------------------------------------------------EEEECCCCCc
Confidence 99987642 3456789999
Q ss_pred eEEEEEec--CC-eEEEEECCCcEEEEECCCCeee-----------------------eee-cCCCCeEEEEEeeCCCCE
Q 005352 357 ILDLSWSK--NN-YLLSASIDKTVRLWRVGNDHCL-----------------------RVF-PHSNYVTCVHFNPVDDNY 409 (701)
Q Consensus 357 I~~l~~s~--~~-~l~s~s~dg~I~iWd~~~~~~~-----------------------~~~-~h~~~V~~l~f~p~~~~~ 409 (701)
|.+++|++ ++ +|++++.|++|++||+.++... ..+ .|...|.++ ++ ++++
T Consensus 206 v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~-~~~~ 282 (464)
T 3v7d_B 206 VRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SG-HGNI 282 (464)
T ss_dssp EEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EE-ETTE
T ss_pred cEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cC-CCCE
Confidence 99999995 55 9999999999999999887532 222 377788877 45 7899
Q ss_pred EEEEEcCCcEEEEeCCCCcEEE-EecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCC
Q 005352 410 FISGSIDGKVRIWAVLSCHVVD-WVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKR 488 (701)
Q Consensus 410 l~sgs~dg~v~iwd~~~~~~~~-~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 488 (701)
|++++.||.|++||+.+++.+. ...|...|.+++|+|+++.+++|+.||.|++||+++++.... ...|...
T Consensus 283 l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~--------~~~h~~~ 354 (464)
T 3v7d_B 283 VVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYT--------LQGHTAL 354 (464)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEE--------ECCCSSC
T ss_pred EEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEE--------EeCCCCc
Confidence 9999999999999999988774 446889999999999999999999999999999998875432 2346678
Q ss_pred eeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 489 ITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 489 i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
|.++.++ +.++++++.|+.|++||+.+....+... +...+..++|++++++|++|+ ||.|++||+.+++
T Consensus 355 v~~~~~~---~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~ 423 (464)
T 3v7d_B 355 VGLLRLS---DKFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGK 423 (464)
T ss_dssp EEEEEEC---SSEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCC
T ss_pred EEEEEEc---CCEEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCc
Confidence 9999996 4799999999999999999877666553 667788899999999999999 8999999999887
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-32 Score=291.47 Aligned_cols=319 Identities=13% Similarity=0.159 Sum_probs=238.2
Q ss_pred ceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEE
Q 005352 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (701)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (701)
+.+.+|.+.|++|+|+| ++|++|+.||.|++|++.+++....
T Consensus 10 ~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~------------------------------------ 51 (397)
T 1sq9_A 10 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENP------------------------------------ 51 (397)
T ss_dssp EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCG------------------------------------
T ss_pred hhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccC------------------------------------
Confidence 45778999999999998 7999999999999999987541100
Q ss_pred eeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecC----C----eEEEEECCCcEEEEECCCCee-----eee
Q 005352 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN----N----YLLSASIDKTVRLWRVGNDHC-----LRV 390 (701)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~----~----~l~s~s~dg~I~iWd~~~~~~-----~~~ 390 (701)
...+..+.+|...|.+++|+|+ + +|++++.|+.|++||+.+++. +..
T Consensus 52 --------------------~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~ 111 (397)
T 1sq9_A 52 --------------------KDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEK 111 (397)
T ss_dssp --------------------GGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEE
T ss_pred --------------------CCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCccccccccee
Confidence 0345667789999999999998 5 889999999999999998876 666
Q ss_pred ec-C-----CCCeEEEEEe----eCCCCE-EEEEEcCCcEEEEeCCC------CcEE------EE-------ecCCCcEE
Q 005352 391 FP-H-----SNYVTCVHFN----PVDDNY-FISGSIDGKVRIWAVLS------CHVV------DW-------VDIRQIVT 440 (701)
Q Consensus 391 ~~-h-----~~~V~~l~f~----p~~~~~-l~sgs~dg~v~iwd~~~------~~~~------~~-------~~~~~~i~ 440 (701)
+. | ...|.+++|+ | ++++ |++++.||.|++||+.+ ++.+ .+ ..+...|+
T Consensus 112 ~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 190 (397)
T 1sq9_A 112 LDLLDSDMKKHSFWALKWGASNDR-LLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFAT 190 (397)
T ss_dssp ECCSCTTGGGSCEEEEEEECCC-----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCC
T ss_pred ecccccccCCCcEEEEEEeeccCC-CCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCce
Confidence 65 6 4899999999 9 8999 99999999999999988 5433 23 23678899
Q ss_pred EEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCC---CCCeeEEEEecCCCCEEEEEECC---CcEEEE
Q 005352 441 AVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAP---CKRITGFQFLPQDSSKVMVSCAD---SQVRIL 514 (701)
Q Consensus 441 ~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~---~~~i~~l~~~p~~~~~l~~~s~d---g~I~iw 514 (701)
+++|+|++ .|++++.+|.|++||+++.+...... . ...| ...|.+++|+| ++.+|++++.| +.|++|
T Consensus 191 ~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~--~---~~~h~~~~~~i~~i~~~~-~~~~l~~~~~d~~~g~i~i~ 263 (397)
T 1sq9_A 191 SVDISERG-LIATGFNNGTVQISELSTLRPLYNFE--S---QHSMINNSNSIRSVKFSP-QGSLLAIAHDSNSFGCITLY 263 (397)
T ss_dssp EEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEE--C---CC---CCCCCEEEEEECS-STTEEEEEEEETTEEEEEEE
T ss_pred EEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEe--c---cccccccCCccceEEECC-CCCEEEEEecCCCCceEEEE
Confidence 99999999 99999999999999999876543221 1 0114 67899999999 68999999999 999999
Q ss_pred eCCccceeeeccc-------------CCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCCCCccccccccccccccCC
Q 005352 515 QGPNVIGKYKGLR-------------RSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTN 581 (701)
Q Consensus 515 d~~~~~~~~~~~~-------------~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~ 581 (701)
|+.+......... |...|.+++|+|++++|++++.||.|++||+.+++.. ..+......
T Consensus 264 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--------~~~~~~~~~ 335 (397)
T 1sq9_A 264 ETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERI--------TTLNMHCDD 335 (397)
T ss_dssp ETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEE--------EEEECCGGG
T ss_pred ECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCcee--------EEEecccCc
Confidence 9987666555555 8899999999999999999999999999999876521 111100000
Q ss_pred ceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccc------cCccccccCCCCcccCCCCccC
Q 005352 582 ASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFS------LGQEYVFESFPKGCATWPEEKL 643 (701)
Q Consensus 582 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~------~~~~~~~~s~d~~~~~W~~~~~ 643 (701)
. ..... ...........+...+..++|+|++.. ....+++++.|+.+++|+.+..
T Consensus 336 ~-----~~~~~--~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 336 I-----EIEED--ILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp C-----SSGGG--CCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred c-----cchhh--hhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 0 00000 000000011122456777888887311 1167899999999999997653
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-31 Score=278.13 Aligned_cols=255 Identities=19% Similarity=0.290 Sum_probs=211.2
Q ss_pred ceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEE
Q 005352 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (701)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (701)
+.+.+|.+.|++|+|+|++++||+|+.||.|++||+.++....
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~------------------------------------- 47 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNW------------------------------------- 47 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCE-------------------------------------
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcc-------------------------------------
Confidence 4577899999999999999999999999999999998653110
Q ss_pred eeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEec--CC-eEEEEECCCcEEEEECCCC---------eeeeee
Q 005352 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK--NN-YLLSASIDKTVRLWRVGND---------HCLRVF 391 (701)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~--~~-~l~s~s~dg~I~iWd~~~~---------~~~~~~ 391 (701)
+....+.+|...|.+++|+| ++ +|++++.||+|++||+.++ +++..+
T Consensus 48 ---------------------~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~ 106 (351)
T 3f3f_A 48 ---------------------ELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTL 106 (351)
T ss_dssp ---------------------EEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEE
T ss_pred ---------------------eecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeee
Confidence 23456778999999999999 46 9999999999999999887 445555
Q ss_pred c-CCCCeEEEEEeeCC--CCEEEEEEcCCcEEEEeCCCCcEEEE--------------ecCCCcEEEEEEeeC---CCeE
Q 005352 392 P-HSNYVTCVHFNPVD--DNYFISGSIDGKVRIWAVLSCHVVDW--------------VDIRQIVTAVCYRPD---GQGG 451 (701)
Q Consensus 392 ~-h~~~V~~l~f~p~~--~~~l~sgs~dg~v~iwd~~~~~~~~~--------------~~~~~~i~~i~~sp~---g~~l 451 (701)
. |...|.+++|+| + +++|++++.||.|++||+++++.+.. ..+...+.+++|+|+ +..+
T Consensus 107 ~~~~~~v~~~~~~~-~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l 185 (351)
T 3f3f_A 107 NDSKGSLYSVKFAP-AHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKL 185 (351)
T ss_dssp CCCSSCEEEEEECC-GGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEE
T ss_pred cccCCceeEEEEcC-CCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEE
Confidence 4 899999999999 7 99999999999999999988764321 146678999999997 8999
Q ss_pred EEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCC---CEEEEEECCCcEEEEeCCcc---------
Q 005352 452 IVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDS---SKVMVSCADSQVRILQGPNV--------- 519 (701)
Q Consensus 452 ~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~---~~l~~~s~dg~I~iwd~~~~--------- 519 (701)
++++.++.+.+|+......... .....|...|++++|+|+.+ .+|++++.|+.|++||+...
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 259 (351)
T 3f3f_A 186 AVSALEQAIIYQRGKDGKLHVA------AKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEES 259 (351)
T ss_dssp EEEETTEEEEEEECTTSCEEEE------EECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC--------
T ss_pred EEecCCCcEEEEccCCCceeee------eecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCc
Confidence 9999999998888877654321 12345678899999999432 79999999999999998652
Q ss_pred -------------------------------------ceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 520 -------------------------------------IGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 520 -------------------------------------~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
........|...|++++|+|++++|++|+.||.|+||++.+++
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 339 (351)
T 3f3f_A 260 LTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSN 339 (351)
T ss_dssp -------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTS
T ss_pred ccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCc
Confidence 2222334588899999999999999999999999999999876
Q ss_pred C
Q 005352 563 E 563 (701)
Q Consensus 563 ~ 563 (701)
.
T Consensus 340 ~ 340 (351)
T 3f3f_A 340 E 340 (351)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-32 Score=285.14 Aligned_cols=302 Identities=12% Similarity=0.177 Sum_probs=235.1
Q ss_pred eccCCCcEEEEEEccC----CCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceee
Q 005352 246 IQAHDGSILTMKFSPD----GQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISIL 321 (701)
Q Consensus 246 l~~H~~~I~~l~fspd----g~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (701)
..+|.++|++++|+|+ ..++++++.++.|++|++.+++.+..+..
T Consensus 14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~------------------------------- 62 (366)
T 3k26_A 14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQS------------------------------- 62 (366)
T ss_dssp ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEE-------------------------------
T ss_pred ecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeee-------------------------------
Confidence 4579999999999984 45667777778999999987654322210
Q ss_pred EEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecC----C-eEEEEECCCcEEEEECCCCeeeeeec-CCC
Q 005352 322 KSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN----N-YLLSASIDKTVRLWRVGNDHCLRVFP-HSN 395 (701)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~----~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~ 395 (701)
+....|...|.+++|+|+ + +|++++.||.|++||+.+++.+..+. |..
T Consensus 63 --------------------------~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~ 116 (366)
T 3k26_A 63 --------------------------YVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGN 116 (366)
T ss_dssp --------------------------EECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCS
T ss_pred --------------------------ccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCC
Confidence 111237788999999998 6 89999999999999999999998887 999
Q ss_pred CeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEe----cCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeee
Q 005352 396 YVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV----DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLE 471 (701)
Q Consensus 396 ~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~----~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~ 471 (701)
.|++++|+|.++++|++++.||.|++||+++++.+... .|...|.+++|+|++++|++++.||.|++||+++.+..
T Consensus 117 ~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 196 (366)
T 3k26_A 117 AINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMM 196 (366)
T ss_dssp CEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHH
T ss_pred cEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccc
Confidence 99999999977899999999999999999999888665 68899999999999999999999999999999876432
Q ss_pred eeeeE--------------------EeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccce----------
Q 005352 472 LDAEI--------------------CVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIG---------- 521 (701)
Q Consensus 472 ~~~~~--------------------~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~---------- 521 (701)
..... ........+...|.+++|+ +.++++++.|+.|++||+.+...
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~ 273 (366)
T 3k26_A 197 NAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL---GDLILSKSCENAIVCWKPGKMEDDIDKIKPSES 273 (366)
T ss_dssp HHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE---TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCC
T ss_pred cccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc---CCEEEEEecCCEEEEEeCCCccccccccccCCc
Confidence 11100 0011122377889999998 46999999999999999875432
Q ss_pred ----eeecccCCCCeEEEEEecC--CCEEEEEeCCCcEEEEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCC
Q 005352 522 ----KYKGLRRSGNQLSACFTSD--GKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGN 595 (701)
Q Consensus 522 ----~~~~~~~~~~v~~l~~s~d--g~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 595 (701)
......|...|.+++|+|+ +++|++|+.||.|++||+.+++.... ....+ .+
T Consensus 274 ~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~----~~~~~-------------~~----- 331 (366)
T 3k26_A 274 NVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKA----KCTTL-------------TH----- 331 (366)
T ss_dssp CEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGC----EEEEE-------------CC-----
T ss_pred chheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccc----cceEE-------------cc-----
Confidence 2333447788999999999 99999999999999999988752110 00000 00
Q ss_pred CCCCCccccCCCCCCCccccCCCccccCccccccCCCCcccCCCCc
Q 005352 596 AEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEE 641 (701)
Q Consensus 596 ~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~ 641 (701)
......+..++|+|+ +..+++++.|+.+++|+..
T Consensus 332 --------~~~~~~v~~~~~s~~----~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 332 --------HKCGAAIRQTSFSRD----SSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp --------TTCCSCEEEEEECTT----SSEEEEEETTSEEEEEEC-
T ss_pred --------cccCCceEEEEeCCC----CCeEEEEeCCCEEEEEEec
Confidence 001345677888996 7788999999999999864
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-31 Score=272.65 Aligned_cols=286 Identities=16% Similarity=0.153 Sum_probs=229.1
Q ss_pred CceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeE
Q 005352 243 GQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (701)
Q Consensus 243 ~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (701)
.+.+.+|.+.|++++| |++++|++|+.||.|++||+.+++.
T Consensus 11 ~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~-------------------------------------- 51 (313)
T 3odt_A 11 SATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWL-------------------------------------- 51 (313)
T ss_dssp EEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEE--------------------------------------
T ss_pred HHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEE--------------------------------------
Confidence 3568899999999999 9999999999999999999976542
Q ss_pred EeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCC---eeeeeec-CCCCe
Q 005352 323 SLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGND---HCLRVFP-HSNYV 397 (701)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~---~~~~~~~-h~~~V 397 (701)
...+..|...|.+++|+|++ +|++++.|+.|++|++... +.+..+. |...|
T Consensus 52 ------------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i 107 (313)
T 3odt_A 52 ------------------------GTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNV 107 (313)
T ss_dssp ------------------------EEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCE
T ss_pred ------------------------EEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCE
Confidence 33456788999999999999 9999999999999998765 4444454 89999
Q ss_pred EEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEee-CCCeEEEEecCCcEEEEECCCCeeeeeeeE
Q 005352 398 TCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRP-DGQGGIVGSMMGDCRFYNVSDNHLELDAEI 476 (701)
Q Consensus 398 ~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp-~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~ 476 (701)
.+++|+ +++|++++.||.|++|| ..........+...+.+++|.| +++.+++++.||.|++||.....
T Consensus 108 ~~~~~~---~~~l~~~~~d~~i~~~d-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~------- 176 (313)
T 3odt_A 108 CSLSFQ---DGVVISGSWDKTAKVWK-EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKVI------- 176 (313)
T ss_dssp EEEEEE---TTEEEEEETTSEEEEEE-TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTEEE-------
T ss_pred EEEEec---CCEEEEEeCCCCEEEEc-CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCceE-------
Confidence 999994 57999999999999999 3333445667889999999999 99999999999999999943211
Q ss_pred EeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 005352 477 CVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMW 556 (701)
Q Consensus 477 ~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iW 556 (701)
......+...+.+++|+| ++. +++++.|+.|++||+.+.........|...|.+++|+|++ .|++++.||.|++|
T Consensus 177 --~~~~~~~~~~i~~~~~~~-~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iw 251 (313)
T 3odt_A 177 --KTFSGIHNDVVRHLAVVD-DGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIW 251 (313)
T ss_dssp --EEECSSCSSCEEEEEEEE-TTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEE
T ss_pred --EEEeccCcccEEEEEEcC-CCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEE
Confidence 111233668899999999 455 9999999999999998776666666689999999999999 59999999999999
Q ss_pred eCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCCccc
Q 005352 557 NCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCA 636 (701)
Q Consensus 557 d~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~ 636 (701)
|+.+++.. ..+ ......+..++|+|+ +. +++++.|+.++
T Consensus 252 d~~~~~~~--------~~~----------------------------~~~~~~i~~~~~~~~----~~-~~~~~~dg~i~ 290 (313)
T 3odt_A 252 SKENGSLK--------QVI----------------------------TLPAISIWSVDCMSN----GD-IIVGSSDNLVR 290 (313)
T ss_dssp CTTTCCEE--------EEE----------------------------ECSSSCEEEEEECTT----SC-EEEEETTSCEE
T ss_pred ECCCCcee--------EEE----------------------------eccCceEEEEEEccC----CC-EEEEeCCCcEE
Confidence 99887521 000 011224566778886 33 67789999999
Q ss_pred CCCCccCCCCcc
Q 005352 637 TWPEEKLPALSQ 648 (701)
Q Consensus 637 ~W~~~~~~~~~~ 648 (701)
+|+.+....+..
T Consensus 291 iw~~~~~~~~~~ 302 (313)
T 3odt_A 291 IFSQEKSRWASE 302 (313)
T ss_dssp EEESCGGGCCC-
T ss_pred EEeCCCCceeeh
Confidence 999887665443
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-31 Score=281.06 Aligned_cols=285 Identities=13% Similarity=0.182 Sum_probs=228.2
Q ss_pred ccCcceeee--cCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEe
Q 005352 202 KQGEGERVR--LNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQV 279 (701)
Q Consensus 202 ~~~~~~~~~--~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~ 279 (701)
+...+.++. +++..+++++.++.|+||+...... .....+.+|.+.|.+++|+|++++|++++.||.|++||+
T Consensus 7 ~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~-----~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~ 81 (372)
T 1k8k_C 7 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW-----VQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTL 81 (372)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEE-----EEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEE
T ss_pred cCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcE-----EeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEEC
Confidence 455565554 4556788898999999999765421 123457789999999999999999999999999999999
Q ss_pred ecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEE
Q 005352 280 VEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILD 359 (701)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~ 359 (701)
.+++... ...+..|...|.+
T Consensus 82 ~~~~~~~------------------------------------------------------------~~~~~~~~~~v~~ 101 (372)
T 1k8k_C 82 KGRTWKP------------------------------------------------------------TLVILRINRAARC 101 (372)
T ss_dssp ETTEEEE------------------------------------------------------------EEECCCCSSCEEE
T ss_pred CCCeeee------------------------------------------------------------eEEeecCCCceeE
Confidence 8765221 1223568889999
Q ss_pred EEEecCC-eEEEEECCCcEEEEECCCCee---eeee--cCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCC--------
Q 005352 360 LSWSKNN-YLLSASIDKTVRLWRVGNDHC---LRVF--PHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVL-------- 425 (701)
Q Consensus 360 l~~s~~~-~l~s~s~dg~I~iWd~~~~~~---~~~~--~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~-------- 425 (701)
++|+|++ +|++++.|+.|++||+..+.. ...+ .|...|++++|+| ++++|++++.||.|++||++
T Consensus 102 ~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~ 180 (372)
T 1k8k_C 102 VRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHP-NSVLLAAGSCDFKCRIFSAYIKEVEERP 180 (372)
T ss_dssp EEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECT-TSSEEEEEETTSCEEEEECCCTTTSCCC
T ss_pred EEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcC-CCCEEEEEcCCCCEEEEEcccccccccc
Confidence 9999999 999999999999999988763 2333 3789999999999 99999999999999999964
Q ss_pred ----------CCcEEE-EecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEE
Q 005352 426 ----------SCHVVD-WVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQF 494 (701)
Q Consensus 426 ----------~~~~~~-~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 494 (701)
.++.+. +..|...|++++|+|++++|++++.||.|++||+++.+..... ..+...|.+++|
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~--------~~~~~~v~~~~~ 252 (372)
T 1k8k_C 181 APTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATL--------ASETLPLLAVTF 252 (372)
T ss_dssp CCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEE--------ECSSCCEEEEEE
T ss_pred cccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEE--------ccCCCCeEEEEE
Confidence 455554 4467889999999999999999999999999999887654321 234568999999
Q ss_pred ecCCCCEEEEEECCCcEEEEeCCc--cc---------------------ee-----------------eec-ccCCCCeE
Q 005352 495 LPQDSSKVMVSCADSQVRILQGPN--VI---------------------GK-----------------YKG-LRRSGNQL 533 (701)
Q Consensus 495 ~p~~~~~l~~~s~dg~I~iwd~~~--~~---------------------~~-----------------~~~-~~~~~~v~ 533 (701)
+| ++.+++++ .|+.|++|++.. .. .. ... ..|...|+
T Consensus 253 ~~-~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 330 (372)
T 1k8k_C 253 IT-ESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVS 330 (372)
T ss_dssp EE-TTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEE
T ss_pred ec-CCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcc
Confidence 99 66766666 999999999866 21 00 111 25889999
Q ss_pred EEEEe-cCC---CEEEEEeCCCcEEEEeCCCCC
Q 005352 534 SACFT-SDG---KHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 534 ~l~~s-~dg---~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
+++|. ++| .+|+||+.||.|++|++.+++
T Consensus 331 ~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 331 QISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp EEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred eeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence 99976 666 999999999999999987754
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-30 Score=269.44 Aligned_cols=283 Identities=17% Similarity=0.245 Sum_probs=230.6
Q ss_pred eecccCcceeeec-CccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEE
Q 005352 199 VVDKQGEGERVRL-NEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLW 277 (701)
Q Consensus 199 ~~~~~~~~~~~~~-~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iW 277 (701)
+..|.+.+.++.+ ++..+++++.|+.|+||+..... ....+..|.+.|.+++|+|++++|++|+.||.|++|
T Consensus 14 l~~h~~~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~ 86 (313)
T 3odt_A 14 LKGHDQDVRDVVAVDDSKVASVSRDGTVRLWSKDDQW-------LGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGV 86 (313)
T ss_dssp ECCCSSCEEEEEEEETTEEEEEETTSEEEEEEESSSE-------EEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred hhCCCCCcEEEEecCCCEEEEEEcCCcEEEEECCCCE-------EEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEE
Confidence 3456777776665 45678889999999999975432 124567799999999999999999999999999999
Q ss_pred EeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCe
Q 005352 278 QVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEI 357 (701)
Q Consensus 278 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I 357 (701)
++..... .+++..+.+|...|
T Consensus 87 ~~~~~~~-----------------------------------------------------------~~~~~~~~~~~~~i 107 (313)
T 3odt_A 87 PLFATSG-----------------------------------------------------------EDPLYTLIGHQGNV 107 (313)
T ss_dssp ETTCCTT-----------------------------------------------------------SCC-CEECCCSSCE
T ss_pred EeeecCC-----------------------------------------------------------CCcccchhhcccCE
Confidence 9865421 03455678899999
Q ss_pred EEEEEecCCeEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEec-C
Q 005352 358 LDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVD-I 435 (701)
Q Consensus 358 ~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~-~ 435 (701)
.+++|. .++|++++.|+.|++|| .++.+..+. |...+.+++|.|.++++|++++.||.|++||.... ...... +
T Consensus 108 ~~~~~~-~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~ 183 (313)
T 3odt_A 108 CSLSFQ-DGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKV-IKTFSGIH 183 (313)
T ss_dssp EEEEEE-TTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTEE-EEEECSSC
T ss_pred EEEEec-CCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCce-EEEEeccC
Confidence 999993 34999999999999999 566666665 89999999999878999999999999999994332 223333 7
Q ss_pred CCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEe
Q 005352 436 RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQ 515 (701)
Q Consensus 436 ~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd 515 (701)
...+.+++|+|++. +++++.+|.|++||+++++.... ...+...|++++|+| ++ .+++++.|+.|++||
T Consensus 184 ~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~--------~~~~~~~i~~~~~~~-~~-~l~~~~~dg~v~iwd 252 (313)
T 3odt_A 184 NDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRT--------YEGHESFVYCIKLLP-NG-DIVSCGEDRTVRIWS 252 (313)
T ss_dssp SSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEE--------EECCSSCEEEEEECT-TS-CEEEEETTSEEEEEC
T ss_pred cccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhh--------hhcCCceEEEEEEec-CC-CEEEEecCCEEEEEE
Confidence 88999999999998 99999999999999998765432 224567899999999 44 699999999999999
Q ss_pred CCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCC
Q 005352 516 GPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEE 563 (701)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~ 563 (701)
+.+.........|...|.+++|+|+++ +++++.||.|++|++.+++.
T Consensus 253 ~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~ 299 (313)
T 3odt_A 253 KENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRW 299 (313)
T ss_dssp TTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGC
T ss_pred CCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCce
Confidence 987766666566888999999999998 66799999999999988763
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-32 Score=288.67 Aligned_cols=285 Identities=12% Similarity=0.151 Sum_probs=212.8
Q ss_pred cCccee--eecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEee
Q 005352 203 QGEGER--VRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVV 280 (701)
Q Consensus 203 ~~~~~~--~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~ 280 (701)
++.+.+ +++++..+++++.|+.|+||+...... .....+.+|.+.|++++|+|++++|++|+.|+.|++||+.
T Consensus 11 ~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~-----~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~ 85 (377)
T 3dwl_C 11 PKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGW-----KHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKR 85 (377)
T ss_dssp SSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEE-----EECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC---
T ss_pred CCcEEEEEECCCCCEEEEecCCCEEEEEEccCCce-----EEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Confidence 344544 455567788899999999999864321 2234577899999999999999999999999999999998
Q ss_pred cCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEE
Q 005352 281 EDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDL 360 (701)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l 360 (701)
+++.. .+...+.+|...|.++
T Consensus 86 ~~~~~-----------------------------------------------------------~~~~~~~~~~~~v~~~ 106 (377)
T 3dwl_C 86 PDGTW-----------------------------------------------------------KQTLVLLRLNRAATFV 106 (377)
T ss_dssp ---CC-----------------------------------------------------------CCEEECCCCSSCEEEE
T ss_pred CCCce-----------------------------------------------------------eeeeEecccCCceEEE
Confidence 75400 2345567899999999
Q ss_pred EEecCC-eEEEEECCCcEEEEECCCCee---eeeec--CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCC--------
Q 005352 361 SWSKNN-YLLSASIDKTVRLWRVGNDHC---LRVFP--HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS-------- 426 (701)
Q Consensus 361 ~~s~~~-~l~s~s~dg~I~iWd~~~~~~---~~~~~--h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~-------- 426 (701)
+|+|++ +|++++.|+.|++||+.+++. ...+. |...|++++|+| ++++|++++.|+.|++||+..
T Consensus 107 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 185 (377)
T 3dwl_C 107 RWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHP-NNVLLAAGCADRKAYVLSAYVRDVDAKPE 185 (377)
T ss_dssp ECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECT-TSSEEEEEESSSCEEEEEECCSSCC-CCC
T ss_pred EECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcC-CCCEEEEEeCCCEEEEEEEEecccCCCcc
Confidence 999998 999999999999999998873 55554 899999999999 999999999999999999852
Q ss_pred ----------CcEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEec
Q 005352 427 ----------CHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLP 496 (701)
Q Consensus 427 ----------~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p 496 (701)
++.+..+.|...|++++|+|++++|++++.||.|++||+.++..... .......+...|.+++|+|
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~----~~~~~~~~~~~v~~~~~s~ 261 (377)
T 3dwl_C 186 ASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPR----ALITVKLSQLPLRSLLWAN 261 (377)
T ss_dssp SCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEE----ECCCEECSSSCEEEEEEEE
T ss_pred ccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcce----eeEeecCCCCceEEEEEcC
Confidence 33444448889999999999999999999999999999998764211 1112344667899999999
Q ss_pred CCCCEEEEEECCCcEEEEeCCccc--------------------------------------eeee--------------
Q 005352 497 QDSSKVMVSCADSQVRILQGPNVI--------------------------------------GKYK-------------- 524 (701)
Q Consensus 497 ~~~~~l~~~s~dg~I~iwd~~~~~--------------------------------------~~~~-------------- 524 (701)
++.+|++++.++.+ +|+..... ..+.
T Consensus 262 -~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 339 (377)
T 3dwl_C 262 -ESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSL 339 (377)
T ss_dssp -TTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCC
T ss_pred -CCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhcccccccccc
Confidence 67888777665555 66653110 0000
Q ss_pred cccCCCCeEEEEEecCC-C---EEEEEeCCCcEEEEeC
Q 005352 525 GLRRSGNQLSACFTSDG-K---HIVSAGEDSNVYMWNC 558 (701)
Q Consensus 525 ~~~~~~~v~~l~~s~dg-~---~l~sgs~Dg~I~iWd~ 558 (701)
...|...|+++++.+.. . .|+||+.||.|+|||+
T Consensus 340 ~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 340 PTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp SSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred CccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 01288899999976643 3 6999999999999985
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-30 Score=283.14 Aligned_cols=277 Identities=19% Similarity=0.315 Sum_probs=223.3
Q ss_pred eeeecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeee
Q 005352 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLT 286 (701)
Q Consensus 207 ~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~ 286 (701)
+.++.+.+.+++.+.|++|+||+....... ....+.+|...|++|+|+|+|++||+|+.||.|+|||+.+++.
T Consensus 109 ~~l~wS~~n~lAvgld~tV~lWd~~tg~~~-----~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~-- 181 (420)
T 4gga_A 109 NLVDWSSGNVLAVALDNSVYLWSASSGDIL-----QLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR-- 181 (420)
T ss_dssp BCEEECTTSEEEEEETTEEEEEETTTCCEE-----EEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE--
T ss_pred eeEEECCCCEEEEEeCCEEEEEECCCCCEE-----EEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcE--
Confidence 345555566677777999999997653211 1123457889999999999999999999999999999988753
Q ss_pred eecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC
Q 005352 287 EVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN 366 (701)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~ 366 (701)
+..+.+|...|.+++|++ .
T Consensus 182 ------------------------------------------------------------~~~~~~h~~~v~~~s~~~-~ 200 (420)
T 4gga_A 182 ------------------------------------------------------------LRNMTSHSARVGSLSWNS-Y 200 (420)
T ss_dssp ------------------------------------------------------------EEEECCCSSCEEEEEEET-T
T ss_pred ------------------------------------------------------------EEEEeCCCCceEEEeeCC-C
Confidence 345678999999988753 3
Q ss_pred eEEEEECCCcEEEEECCCCe-eeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcE-----EEEecCCCcE
Q 005352 367 YLLSASIDKTVRLWRVGNDH-CLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHV-----VDWVDIRQIV 439 (701)
Q Consensus 367 ~l~s~s~dg~I~iWd~~~~~-~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~-----~~~~~~~~~i 439 (701)
.|++|+.|+.+++||..... .+..+. |...+.++.|+| ++.++++++.|+.+++|+..+++. .....+...|
T Consensus 201 ~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~-~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V 279 (420)
T 4gga_A 201 ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAV 279 (420)
T ss_dssp EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCE
T ss_pred EEEEEeCCCceeEeeecccceeeEEecccccceeeeeecC-CCCeeeeeeccccceEEeeccccccceeeeeecccCCce
Confidence 89999999999999988654 344444 899999999999 999999999999999999987642 3455688899
Q ss_pred EEEEEeeCCCe-EEE--EecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEE--CCCcEEEE
Q 005352 440 TAVCYRPDGQG-GIV--GSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSC--ADSQVRIL 514 (701)
Q Consensus 440 ~~i~~sp~g~~-l~~--gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s--~dg~I~iw 514 (701)
.+++|+|.+.. +++ |+.|+.|++||+.++....... ....+.++.|+| ++..+++++ .|+.|+||
T Consensus 280 ~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~---------~~~~v~~~~~~~-~~~~lv~~sg~~d~~I~iw 349 (420)
T 4gga_A 280 KAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD---------AHSQVCSILWSP-HYKELISGHGFAQNQLVIW 349 (420)
T ss_dssp EEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEE---------CSSCEEEEEEET-TTTEEEEEECTTTCCEEEE
T ss_pred eeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeec---------cccceeeeeecC-CCCeEEEEEecCCCEEEEE
Confidence 99999997654 444 4579999999999987653221 235689999999 566666554 69999999
Q ss_pred eCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 515 QGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 515 d~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
|..+........+|...|++++|+|+|++|+||+.|++|+|||+.+..
T Consensus 350 d~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~ 397 (420)
T 4gga_A 350 KYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD 397 (420)
T ss_dssp ETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSS
T ss_pred ECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 999877777777799999999999999999999999999999998755
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-32 Score=299.29 Aligned_cols=284 Identities=13% Similarity=0.063 Sum_probs=211.4
Q ss_pred cccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccC------CCEEEEEeCCCcEEEEEeecCeeeee
Q 005352 214 EDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPD------GQYLASAGDDGVVRLWQVVEDERLTE 287 (701)
Q Consensus 214 ~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd------g~~Lasgs~Dg~I~iWd~~~~~~~~~ 287 (701)
..+++++.|++|+||++....... .....+.+|.+.|++|+|+|+ +.+||+|+.||+|+|||+.++.....
T Consensus 174 ~~laS~s~D~tI~iWd~~~~~~~~---~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~ 250 (524)
T 2j04_B 174 EMFDKEKHSSCIQIFKMNTSTLHC---VKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVH 250 (524)
T ss_dssp --------CEEEEEEEEETTTCCE---EEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSS
T ss_pred hhhccCCCCceEEEEEccCCCCCc---eEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccc
Confidence 346778899999999985432111 112346678999999999997 57999999999999999976531100
Q ss_pred ecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCCe
Q 005352 288 VDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNY 367 (701)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~ 367 (701)
.. .....+...+.+|...|++++|++++.
T Consensus 251 ~~---------------------------------------------------~~~~~p~~~l~~h~~~v~sv~~s~~~~ 279 (524)
T 2j04_B 251 VF---------------------------------------------------KMCEKPSLTLSLADSLITTFDFLSPTT 279 (524)
T ss_dssp EE---------------------------------------------------ECCCSCSEEECCTTTCEEEEEESSSSE
T ss_pred cc---------------------------------------------------eeecCceEEEEcCCCCEEEEEecCCCe
Confidence 00 000145567889999999999998779
Q ss_pred EEEEECCCcEEEEECCCCe-eeeee-cCCCCeEEE--EEeeCCC-CEEEEEEcCCcEEEEeCCCCcEEE-EecCC--CcE
Q 005352 368 LLSASIDKTVRLWRVGNDH-CLRVF-PHSNYVTCV--HFNPVDD-NYFISGSIDGKVRIWAVLSCHVVD-WVDIR--QIV 439 (701)
Q Consensus 368 l~s~s~dg~I~iWd~~~~~-~~~~~-~h~~~V~~l--~f~p~~~-~~l~sgs~dg~v~iwd~~~~~~~~-~~~~~--~~i 439 (701)
|++|+.||+|++||++++. +...+ .|...|+++ +|+| ++ .+|++|+.|++|+|||+++++... ...|. ..|
T Consensus 280 lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~-~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v 358 (524)
T 2j04_B 280 VVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSD-FEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNL 358 (524)
T ss_dssp EEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCT-TSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSC
T ss_pred EEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCC-CCCeEEEEeccCCeEEEEECCCCCcccccccccccCcc
Confidence 9999999999999999764 33444 499999999 4666 76 899999999999999999876543 23333 358
Q ss_pred EEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCcc
Q 005352 440 TAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV 519 (701)
Q Consensus 440 ~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~ 519 (701)
.+++|+|+++.+++++.|++|++||+++...... ...|...|++++|+| ++.+|++|+.|++|++||....
T Consensus 359 ~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~--------l~gH~~~V~sva~Sp-~g~~l~Sgs~Dgtv~lwd~~~~ 429 (524)
T 2j04_B 359 VPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHP--------LVSRETTITAIGVSR-LHPMVLAGSADGSLIITNAARR 429 (524)
T ss_dssp CCEEEETTTTEEEEECSSSEEEEEETTCTTCCEE--------EEECSSCEEEEECCS-SCCBCEEEETTTEEECCBSCSS
T ss_pred cceEeCCCcCeEEEeCCCCcEEEEECccccccee--------eecCCCceEEEEeCC-CCCeEEEEECCCEEEEEechHh
Confidence 8999999999999999999999999998654321 123668899999999 7889999999999999984310
Q ss_pred -----c---------e------------------------------eeecccCCCCeEEEEEecCC---CEEEEEeCCCc
Q 005352 520 -----I---------G------------------------------KYKGLRRSGNQLSACFTSDG---KHIVSAGEDSN 552 (701)
Q Consensus 520 -----~---------~------------------------------~~~~~~~~~~v~~l~~s~dg---~~l~sgs~Dg~ 552 (701)
. . ......|...|.+++|+|++ ..|++|+.||.
T Consensus 430 ~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~ 509 (524)
T 2j04_B 430 LLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGL 509 (524)
T ss_dssp TTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSE
T ss_pred hccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCce
Confidence 0 0 00112366789999999996 49999999999
Q ss_pred EEEEeCCCC
Q 005352 553 VYMWNCIGH 561 (701)
Q Consensus 553 I~iWd~~~~ 561 (701)
|+||++...
T Consensus 510 vrlw~l~~~ 518 (524)
T 2j04_B 510 LTLEYLSLE 518 (524)
T ss_dssp EEEEECSCC
T ss_pred EEEEEcccc
Confidence 999998754
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-31 Score=286.45 Aligned_cols=287 Identities=15% Similarity=0.204 Sum_probs=230.0
Q ss_pred eeecCccccc---cccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEcc-CCCEEEEEeCCCcEEEEEeecCe
Q 005352 208 RVRLNEEDAM---FCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSP-DGQYLASAGDDGVVRLWQVVEDE 283 (701)
Q Consensus 208 ~~~~~~~~~~---~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp-dg~~Lasgs~Dg~I~iWd~~~~~ 283 (701)
.+..+++..+ .++.+|.|+||++.+..... .....+.+|.+.|++++|+| ++++||+|+.||.|+|||+.++.
T Consensus 39 ~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~---~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~ 115 (402)
T 2aq5_A 39 FCAVNPKFMALICEASGGGAFLVLPLGKTGRVD---KNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG 115 (402)
T ss_dssp SEEECSSEEEEEBCCSSSCCEEEEETTCCEECC---TTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred cEEECCCeEEEEEEEcCCCEEEEEECccCCCCC---CCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence 3445555433 37889999999986543321 12235778999999999999 99999999999999999998764
Q ss_pred eeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEe
Q 005352 284 RLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS 363 (701)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s 363 (701)
..... ..++..+.+|...|.+++|+
T Consensus 116 ~~~~~-------------------------------------------------------~~~~~~~~~h~~~v~~~~~~ 140 (402)
T 2aq5_A 116 LVLPL-------------------------------------------------------REPVITLEGHTKRVGIVAWH 140 (402)
T ss_dssp CSSCB-------------------------------------------------------CSCSEEEECCSSCEEEEEEC
T ss_pred Ccccc-------------------------------------------------------CCceEEecCCCCeEEEEEEC
Confidence 21100 14567788999999999999
Q ss_pred cCC--eEEEEECCCcEEEEECCCCeeeeee--c-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEe--cCC
Q 005352 364 KNN--YLLSASIDKTVRLWRVGNDHCLRVF--P-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV--DIR 436 (701)
Q Consensus 364 ~~~--~l~s~s~dg~I~iWd~~~~~~~~~~--~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~--~~~ 436 (701)
|++ +|++++.|++|++||+.+++++..+ . |...|++++|+| ++++|++++.||.|++||+++++.+... .|.
T Consensus 141 p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 219 (402)
T 2aq5_A 141 PTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSR-DGALICTSCRDKRVRVIEPRKGTVVAEKDRPHE 219 (402)
T ss_dssp SSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECT-TSSCEEEEETTSEEEEEETTTTEEEEEEECSSC
T ss_pred cCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECC-CCCEEEEEecCCcEEEEeCCCCceeeeeccCCC
Confidence 996 8999999999999999999999888 3 899999999999 9999999999999999999999887554 555
Q ss_pred Cc-EEEEEEeeCCCeEEEE---ecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEE-EEECCCcE
Q 005352 437 QI-VTAVCYRPDGQGGIVG---SMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVM-VSCADSQV 511 (701)
Q Consensus 437 ~~-i~~i~~sp~g~~l~~g---s~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~-~~s~dg~I 511 (701)
.. +.+++|+|++++|++| +.++.|++||+++....... ....+...+.+++|+| ++.+++ +++.|+.|
T Consensus 220 ~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~------~~~~~~~~v~~~~~s~-~~~~l~~~g~~dg~i 292 (402)
T 2aq5_A 220 GTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSL------QELDTSSGVLLPFFDP-DTNIVYLCGKGDSSI 292 (402)
T ss_dssp SSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEE------EECCCCSSCEEEEEET-TTTEEEEEETTCSCE
T ss_pred CCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceE------EeccCCCceeEEEEcC-CCCEEEEEEcCCCeE
Confidence 54 8999999999999999 78999999999876532111 1123456799999999 566665 55579999
Q ss_pred EEEeCCccc---eeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 512 RILQGPNVI---GKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 512 ~iwd~~~~~---~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
++||+.+.. ..+..+.+...|.+++|+|++.++++ .++.+++|++.++.
T Consensus 293 ~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~ 344 (402)
T 2aq5_A 293 RYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERK 344 (402)
T ss_dssp EEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTE
T ss_pred EEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcCCCc
Confidence 999998654 34444556789999999999998875 56799999998754
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-29 Score=274.24 Aligned_cols=332 Identities=14% Similarity=0.216 Sum_probs=257.4
Q ss_pred HHHHhHHhhhc-cceeeecccCc-ceeeecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccC
Q 005352 184 RVKKRWFSRLR-SLACVVDKQGE-GERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPD 261 (701)
Q Consensus 184 r~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd 261 (701)
++...|...-. ....+..|.+. +.++.++++.+++++.|+.|+||+..... ....+.+|.+.|++++|+
T Consensus 98 ~~~~~w~~~~~~~~~~l~~h~~~v~~~~~~~g~~l~sg~~dg~i~vwd~~~~~-------~~~~~~~h~~~v~~~~~~-- 168 (445)
T 2ovr_B 98 RIDTNWRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGK-------CLRTLVGHTGGVWSSQMR-- 168 (445)
T ss_dssp HHHHHHHHSCCCCCEEEECSTTSCEEEEEEETTEEEEEETTSCEEEEETTTCC-------EEEECCCCSSCEEEEEEE--
T ss_pred hhhhcccCCCcceeEEecccCCCcEEEEEEcCCEEEEEECCCcEEEEECCCCc-------EEEEEcCCCCCEEEEEec--
Confidence 34455665432 23334456554 47888999999999999999999976432 124577899999999997
Q ss_pred CCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCcccc
Q 005352 262 GQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFR 341 (701)
Q Consensus 262 g~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (701)
+.+|++|+.||.|++||+.+++.+..+..+.....++.+..+ . ......+..+.+++...
T Consensus 169 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~----~--------------l~s~s~dg~i~~wd~~~-- 228 (445)
T 2ovr_B 169 DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEK----R--------------VVSGSRDATLRVWDIET-- 228 (445)
T ss_dssp TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETT----E--------------EEEEETTSEEEEEESSS--
T ss_pred CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEecCC----E--------------EEEEeCCCEEEEEECCC--
Confidence 669999999999999999999888887766655555444210 0 11112233333333221
Q ss_pred ccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcE
Q 005352 342 ILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKV 419 (701)
Q Consensus 342 ~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v 419 (701)
.+.+..+.+|...|.+++| ++ ++++++.|+.|++||+.+++++..+. |...|.+++| ++.++++++.||.|
T Consensus 229 --~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~---~~~~l~~~~~d~~i 301 (445)
T 2ovr_B 229 --GQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF---DGIHVVSGSLDTSI 301 (445)
T ss_dssp --CCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE---CSSEEEEEETTSCE
T ss_pred --CcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE---CCCEEEEEeCCCeE
Confidence 2567788899999999999 45 99999999999999999999998887 8899999998 67899999999999
Q ss_pred EEEeCCCCcEEE-EecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCC
Q 005352 420 RIWAVLSCHVVD-WVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQD 498 (701)
Q Consensus 420 ~iwd~~~~~~~~-~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~ 498 (701)
++||+++++.+. ...|...+.++.+ +++.+++|+.||.|++||+++++.... ......+...|++++|+
T Consensus 302 ~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~-----~~~~~~~~~~v~~~~~~--- 371 (445)
T 2ovr_B 302 RVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQT-----LQGPNKHQSAVTCLQFN--- 371 (445)
T ss_dssp EEEETTTCCEEEEECCCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEE-----ECSTTSCSSCEEEEEEC---
T ss_pred EEEECCCCCEEEEEcCCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEE-----EccCCCCCCCEEEEEEC---
Confidence 999999998774 4467778887776 467999999999999999988765422 11223466889999995
Q ss_pred CCEEEEEECCCcEEEEeCCccceeeec-----ccCCCCeEEEEEecCCCEEEEEeCCCc----EEEEeCCCC
Q 005352 499 SSKVMVSCADSQVRILQGPNVIGKYKG-----LRRSGNQLSACFTSDGKHIVSAGEDSN----VYMWNCIGH 561 (701)
Q Consensus 499 ~~~l~~~s~dg~I~iwd~~~~~~~~~~-----~~~~~~v~~l~~s~dg~~l~sgs~Dg~----I~iWd~~~~ 561 (701)
+.++++++.||.|++||+.+....... ..+...|.+++|+|++.+|++|+.||. |.+||++..
T Consensus 372 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 372 KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence 479999999999999999865544333 357889999999999999999999998 999999864
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.98 E-value=1.4e-31 Score=284.38 Aligned_cols=251 Identities=11% Similarity=0.053 Sum_probs=186.0
Q ss_pred CCcEEEEEEccCCCEEEEEeCCC-------cEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeE
Q 005352 250 DGSILTMKFSPDGQYLASAGDDG-------VVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (701)
Q Consensus 250 ~~~I~~l~fspdg~~Lasgs~Dg-------~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (701)
.-||++++|+|||++|++||.|. .|++|++..........+
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~-------------------------------- 61 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQF-------------------------------- 61 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHE--------------------------------
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeee--------------------------------
Confidence 35899999999999999997643 599999976532110000
Q ss_pred EeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCCeEE-----------EEECCCcEEEEECCCCeeee--
Q 005352 323 SLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLL-----------SASIDKTVRLWRVGNDHCLR-- 389 (701)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~l~-----------s~s~dg~I~iWd~~~~~~~~-- 389 (701)
.......+.+|...|.++++.++ .++ +++.|+++++|++.......
T Consensus 62 --------------------~~~~~~~l~~~~~~v~s~~~~~~-~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~ 120 (365)
T 4h5i_A 62 --------------------HILSEFALEDNDDSPTAIDASKG-IILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEF 120 (365)
T ss_dssp --------------------EEEEEEECCTTSCCCCEEEEETT-EEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEE
T ss_pred --------------------eeeeEEEccCCCCceEEEEeCCC-EEEEEECCCccEEEEecCCCcEEEEEecCCCceEEE
Confidence 00011235677788888877543 333 34567889999986653211
Q ss_pred --ee------cCCCCeEEEEEeeCCCCEEEEEE--cCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecCCc
Q 005352 390 --VF------PHSNYVTCVHFNPVDDNYFISGS--IDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGD 459 (701)
Q Consensus 390 --~~------~h~~~V~~l~f~p~~~~~l~sgs--~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~ 459 (701)
.. .+..++.+++|+| +++++++++ .|++|+|||+.+++.+....+...|.+++|+|+|+++++++.+ .
T Consensus 121 ~~~~~~~~~~~~~~~~~~v~fSp-Dg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~~-~ 198 (365)
T 4h5i_A 121 LTSVDFDASTNADDYTKLVYISR-EGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYITGS-S 198 (365)
T ss_dssp EEEECSSCCCCTTCCEEEEEECT-TSSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEECSS-C
T ss_pred eeeeceeecCCcccCEEEEEEcC-CCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEeccce-e
Confidence 11 1456799999999 999887554 6899999999999999888899999999999999999999855 5
Q ss_pred EEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCC----cEEEEeCCccce----eeecccCCCC
Q 005352 460 CRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADS----QVRILQGPNVIG----KYKGLRRSGN 531 (701)
Q Consensus 460 v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg----~I~iwd~~~~~~----~~~~~~~~~~ 531 (701)
+.+|+..++..... .....+...|.+++|+| ++..+++++.|+ .+++|+...... ......|...
T Consensus 199 ~~~~~~~~~~~~~~------~~~~~~~~~v~~v~fsp-dg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 271 (365)
T 4h5i_A 199 LEVISTVTGSCIAR------KTDFDKNWSLSKINFIA-DDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKG 271 (365)
T ss_dssp EEEEETTTCCEEEE------ECCCCTTEEEEEEEEEE-TTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSC
T ss_pred EEEEEeccCcceee------eecCCCCCCEEEEEEcC-CCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCC
Confidence 66666665554321 12344667899999999 788999988877 578888764332 2334458889
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 532 QLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 532 v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
|++++|+|+|++||+|+.|+.|+|||+.+++
T Consensus 272 V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~ 302 (365)
T 4h5i_A 272 ITSMDVDMKGELAVLASNDNSIALVKLKDLS 302 (365)
T ss_dssp EEEEEECTTSCEEEEEETTSCEEEEETTTTE
T ss_pred eEeEEECCCCCceEEEcCCCEEEEEECCCCc
Confidence 9999999999999999999999999987764
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=4.8e-31 Score=287.25 Aligned_cols=298 Identities=9% Similarity=0.092 Sum_probs=226.0
Q ss_pred cccCcceeeec---CccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEE
Q 005352 201 DKQGEGERVRL---NEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLW 277 (701)
Q Consensus 201 ~~~~~~~~~~~---~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iW 277 (701)
.|.+.+.++.+ ++..+++++.|+.|+||+........ ........+|.+.|++|+|+|++++|++|+.||.|++|
T Consensus 61 ~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw 138 (437)
T 3gre_A 61 NEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGE--VYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVL 138 (437)
T ss_dssp TTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTC--CCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred CCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCc--ccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEE
Confidence 35567776655 44678889999999999975421111 11111122599999999999999999999999999999
Q ss_pred Eee---cCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEE--cC
Q 005352 278 QVV---EDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEF--HG 352 (701)
Q Consensus 278 d~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 352 (701)
|+. +++....... ..+..+ ..
T Consensus 139 d~~~~~~~~~~~~~~~------------------------------------------------------~~i~~~~~~~ 164 (437)
T 3gre_A 139 KVNHYQQESEVKFLNC------------------------------------------------------ECIRKINLKN 164 (437)
T ss_dssp EEEEEEETTEEEEEEE------------------------------------------------------EEEEEEEGGG
T ss_pred EeccccCCceeecccc------------------------------------------------------ceeEEEEccC
Confidence 995 3332211110 001111 11
Q ss_pred --CccCeEEEE--EecCC-eEEEEECCCcEEEEECCCCeeeeeec---CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeC
Q 005352 353 --HSGEILDLS--WSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP---HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAV 424 (701)
Q Consensus 353 --h~~~I~~l~--~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~---h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~ 424 (701)
+...+.++. +++++ +|++++.|+.|++||+++++++..+. |...|++++|+| ++++|++|+.||.|++||+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~ 243 (437)
T 3gre_A 165 FGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDE-ECCVLILGTTRGIIDIWDI 243 (437)
T ss_dssp GSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECT-TSCEEEEEETTSCEEEEET
T ss_pred cccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECC-CCCEEEEEcCCCeEEEEEc
Confidence 566788888 55777 99999999999999999999988886 689999999999 8999999999999999999
Q ss_pred CCCcEEEEe--cCCCcEEEEEEee----CCCeEEEEecCCcEEEEECCCCeeeeeeeEEe---e---c----------cc
Q 005352 425 LSCHVVDWV--DIRQIVTAVCYRP----DGQGGIVGSMMGDCRFYNVSDNHLELDAEICV---H---S----------KK 482 (701)
Q Consensus 425 ~~~~~~~~~--~~~~~i~~i~~sp----~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~---~---~----------~~ 482 (701)
++++.+... .+...|++++|+| ++.+|++|+.||.|++||+++++......... . . ..
T Consensus 244 ~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 323 (437)
T 3gre_A 244 RFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNF 323 (437)
T ss_dssp TTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCC
T ss_pred CCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceeccccccccccee
Confidence 999887654 6777899996665 67899999999999999999887544322100 0 0 00
Q ss_pred --CCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeeccc---------------------------------
Q 005352 483 --KAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLR--------------------------------- 527 (701)
Q Consensus 483 --~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~--------------------------------- 527 (701)
..+...|++++|++ +.+|++++.|+.|++||+.+.........
T Consensus 324 ~~~~~~~~v~~l~~~~--~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (437)
T 3gre_A 324 CGIRSLNALSTISVSN--DKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVD 401 (437)
T ss_dssp CCCCSGGGGCCEEEET--TEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC--------
T ss_pred cccccCCceEEEEECC--ceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccC
Confidence 12567799999993 58999999999999999876443322221
Q ss_pred ----CCCCeEEEEEecC--CCEEEEEeCCCcEEEEe
Q 005352 528 ----RSGNQLSACFTSD--GKHIVSAGEDSNVYMWN 557 (701)
Q Consensus 528 ----~~~~v~~l~~s~d--g~~l~sgs~Dg~I~iWd 557 (701)
|...|++++|+++ +.+|++|+.||.|+||+
T Consensus 402 ~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 402 DSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp -----CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred cccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 7889999999998 78999999999999995
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=5.7e-30 Score=265.43 Aligned_cols=277 Identities=19% Similarity=0.308 Sum_probs=220.0
Q ss_pred eeeecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeee
Q 005352 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLT 286 (701)
Q Consensus 207 ~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~ 286 (701)
+.++.+.+.+++.+.|++|+|||....... ....+.+|...|++|+|+|++++||+|+.||+|++|++.+++.
T Consensus 29 ~~l~WS~~~~lAvg~D~tV~iWd~~tg~~~-----~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~-- 101 (318)
T 4ggc_A 29 NLVDWSSGNVLAVALDNSVYLWSASSGDIL-----QLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR-- 101 (318)
T ss_dssp BCEEECTTSEEEEEETTEEEEEETTTCCEE-----EEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE--
T ss_pred eEEEECCCCEEEEEeCCEEEEEECCCCCEE-----EEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCcee--
Confidence 445566666777778999999997643211 1123457899999999999999999999999999999988753
Q ss_pred eecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC
Q 005352 287 EVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN 366 (701)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~ 366 (701)
+..+.+|...+.++.+.+ .
T Consensus 102 ------------------------------------------------------------~~~~~~h~~~~~~~~~~~-~ 120 (318)
T 4ggc_A 102 ------------------------------------------------------------LRNMTSHSARVGSLSWNS-Y 120 (318)
T ss_dssp ------------------------------------------------------------EEEEECCSSCEEEEEEET-T
T ss_pred ------------------------------------------------------------EEEecCccceEEEeecCC-C
Confidence 345567888887766542 2
Q ss_pred eEEEEECCCcEEEEECCCCee-eeee-cCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcE-----EEEecCCCcE
Q 005352 367 YLLSASIDKTVRLWRVGNDHC-LRVF-PHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHV-----VDWVDIRQIV 439 (701)
Q Consensus 367 ~l~s~s~dg~I~iWd~~~~~~-~~~~-~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~-----~~~~~~~~~i 439 (701)
.+++++.++.+++|+...... +..+ .|...+.++.+.+ ++++|++++.|+.|++||+++++. .....+...|
T Consensus 121 ~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v 199 (318)
T 4ggc_A 121 ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAV 199 (318)
T ss_dssp EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCE
T ss_pred EEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcC-CCCEEEEEecCcceeEEECCCCcccccceeeecccCCce
Confidence 899999999999999887643 3333 4899999999999 999999999999999999987653 2445677889
Q ss_pred EEEEEeeCCCeEE---EEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEE--CCCcEEEE
Q 005352 440 TAVCYRPDGQGGI---VGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSC--ADSQVRIL 514 (701)
Q Consensus 440 ~~i~~sp~g~~l~---~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s--~dg~I~iw 514 (701)
.+++++|++..++ +++.++.|++||......... ..+...+..+.|+| .+..+++++ .|+.|++|
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~---------~~~~~~v~~~~~~~-~~~~~~~~sg~~d~~i~iw 269 (318)
T 4ggc_A 200 KAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA---------VDAHSQVCSILWSP-HYKELISGHGFAQNQLVIW 269 (318)
T ss_dssp EEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEE---------EECSSCEEEEEEET-TTTEEEEEECTTTCCEEEE
T ss_pred EEEEecCCCCcEEEEEecCCCCEEEEEeccccccccc---------ccceeeeeeeeecc-cccceEEEEEcCCCEEEEE
Confidence 9999999776443 566789999999988765321 12346689999999 455555544 69999999
Q ss_pred eCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 515 QGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 515 d~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
|+.+.........|...|++++|+|+|++|+||+.||+|+|||+.+..
T Consensus 270 d~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 270 KYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp ETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred ECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 999877776666799999999999999999999999999999997653
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.3e-30 Score=273.69 Aligned_cols=286 Identities=16% Similarity=0.277 Sum_probs=224.5
Q ss_pred ceeccCCCcEEEEEEccC---CCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeecccccee
Q 005352 244 QEIQAHDGSILTMKFSPD---GQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISI 320 (701)
Q Consensus 244 ~~l~~H~~~I~~l~fspd---g~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (701)
+.+++|.+.|++|+|+|+ |++|++|+.||.|+|||+.+...
T Consensus 33 ~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~------------------------------------ 76 (368)
T 3mmy_A 33 EVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ------------------------------------ 76 (368)
T ss_dssp ECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC------------------------------------
T ss_pred EeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc------------------------------------
Confidence 457889999999999999 69999999999999999986320
Q ss_pred eEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeecCCCCeEE
Q 005352 321 LKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTC 399 (701)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~ 399 (701)
.....+.+|...|.+++|+|++ +|++++.||.|++||+.+++.+....|...|++
T Consensus 77 ------------------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~ 132 (368)
T 3mmy_A 77 ------------------------TIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKT 132 (368)
T ss_dssp ------------------------EEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEE
T ss_pred ------------------------eeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeeccccCceEE
Confidence 1124567899999999999999 999999999999999999999998889999999
Q ss_pred EEE--eeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEE
Q 005352 400 VHF--NPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEIC 477 (701)
Q Consensus 400 l~f--~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~ 477 (701)
++| +| ++++|++++.||.|++||+++++.+........+.++.+.+ ..+++++.++.+++|+++.......
T Consensus 133 ~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~---- 205 (368)
T 3mmy_A 133 IHWIKAP-NYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY--PMAVVATAERGLIVYQLENQPSEFR---- 205 (368)
T ss_dssp EEEEECS-SCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEET--TEEEEEEGGGCEEEEECSSSCEEEE----
T ss_pred EEEEeCC-CCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecC--CeeEEEeCCCcEEEEEeccccchhh----
Confidence 999 77 88899999999999999999998887777777777777664 5889999999999999987654321
Q ss_pred eecccCCCCCCeeEEEEecCCCC----EEEEEECCCcEEEEeCCcc---ceeeecccCCC------------CeEEEEEe
Q 005352 478 VHSKKKAPCKRITGFQFLPQDSS----KVMVSCADSQVRILQGPNV---IGKYKGLRRSG------------NQLSACFT 538 (701)
Q Consensus 478 ~~~~~~~~~~~i~~l~~~p~~~~----~l~~~s~dg~I~iwd~~~~---~~~~~~~~~~~------------~v~~l~~s 538 (701)
.........+.++.+.+ +.. .+++++.|+.|++||+... ........|.. .|.+++|+
T Consensus 206 --~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 282 (368)
T 3mmy_A 206 --RIESPLKHQHRCVAIFK-DKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFH 282 (368)
T ss_dssp --ECCCSCSSCEEEEEEEE-CTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEEC
T ss_pred --hccccccCCCceEEEcc-cCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEe
Confidence 11223334566666665 233 3999999999999999754 22222222333 79999999
Q ss_pred cCCCEEEEEeCCCcEEEEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCC
Q 005352 539 SDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPA 618 (701)
Q Consensus 539 ~dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~ 618 (701)
|++++|++++.||.|++||+.+++.. ..+ ......+..++|+|+
T Consensus 283 p~~~~l~s~~~dg~i~iwd~~~~~~~--------~~~----------------------------~~~~~~v~~~~~s~~ 326 (368)
T 3mmy_A 283 PVHGTLATVGSDGRFSFWDKDARTKL--------KTS----------------------------EQLDQPISACCFNHN 326 (368)
T ss_dssp TTTCCEEEEETTSCEEEEETTTTEEE--------EEC----------------------------CCCSSCEEEEEECTT
T ss_pred cCCCEEEEEccCCeEEEEECCCCcEE--------EEe----------------------------cCCCCCceEEEECCC
Confidence 99999999999999999999876521 010 011335667788887
Q ss_pred ccccCccccccCCCCcccCCC
Q 005352 619 RFSLGQEYVFESFPKGCATWP 639 (701)
Q Consensus 619 ~~~~~~~~~~~s~d~~~~~W~ 639 (701)
+..+++++.|+..+.|.
T Consensus 327 ----g~~l~~~s~d~~~~~~~ 343 (368)
T 3mmy_A 327 ----GNIFAYASSYDWSKGHE 343 (368)
T ss_dssp ----SSCEEEEECCCSTTCGG
T ss_pred ----CCeEEEEeccccccccc
Confidence 67788888777655444
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.3e-30 Score=275.24 Aligned_cols=296 Identities=19% Similarity=0.265 Sum_probs=234.4
Q ss_pred CCeEEEcCCccCeEEEEEec-CC-eEEEEECCCcEEEEECCCCeeeeeec--------------CCCCeEEEEEeeCCCC
Q 005352 345 KPLHEFHGHSGEILDLSWSK-NN-YLLSASIDKTVRLWRVGNDHCLRVFP--------------HSNYVTCVHFNPVDDN 408 (701)
Q Consensus 345 ~~~~~~~~h~~~I~~l~~s~-~~-~l~s~s~dg~I~iWd~~~~~~~~~~~--------------h~~~V~~l~f~p~~~~ 408 (701)
+....+.+|.+.|++++|+| ++ +|++++.||.|++||+.++.....+. |...|++++|+|.++.
T Consensus 34 ~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 113 (408)
T 4a11_B 34 KDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTG 113 (408)
T ss_dssp TTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTT
T ss_pred cceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCc
Confidence 55667789999999999999 88 99999999999999999887665553 8899999999996778
Q ss_pred EEEEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeC---CCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCC
Q 005352 409 YFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPD---GQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAP 485 (701)
Q Consensus 409 ~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~---g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~ 485 (701)
+|++++.||.|++||+.+++......+...+.++++.|. +..+++++.+|.|++||+++++.... ...+
T Consensus 114 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~--------~~~~ 185 (408)
T 4a11_B 114 MFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHI--------LQGH 185 (408)
T ss_dssp CEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEE--------ECCC
T ss_pred EEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeee--------ecCC
Confidence 999999999999999999999988889999999999994 45999999999999999987754321 2346
Q ss_pred CCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeec----------------ccCCCCeEEEEEecCCCEEEEEeC
Q 005352 486 CKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKG----------------LRRSGNQLSACFTSDGKHIVSAGE 549 (701)
Q Consensus 486 ~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~----------------~~~~~~v~~l~~s~dg~~l~sgs~ 549 (701)
...|.+++|+|++..++++++.|+.|++||++........ ..|...|.+++|+|++++|++++.
T Consensus 186 ~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 265 (408)
T 4a11_B 186 RQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGT 265 (408)
T ss_dssp CSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEET
T ss_pred CCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecC
Confidence 6889999999955557999999999999998754321111 347889999999999999999999
Q ss_pred CCcEEEEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCcccccc
Q 005352 550 DSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFE 629 (701)
Q Consensus 550 Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~ 629 (701)
||.|++||+.+++.......... .. ..........+. ....++..
T Consensus 266 dg~i~vwd~~~~~~~~~~~~~~~-------------------------------~~-~~~~~~~~~~~~---~~~~~~~~ 310 (408)
T 4a11_B 266 DNRMRLWNSSNGENTLVNYGKVC-------------------------------NN-SKKGLKFTVSCG---CSSEFVFV 310 (408)
T ss_dssp TSCEEEEETTTCCBCCCCCCCCC-------------------------------CC-CSSCCCCEECCS---SSSCEEEE
T ss_pred CCeEEEEECCCCccceecccccc-------------------------------cc-ccccceeEEecC---CCceEEEE
Confidence 99999999998763211100000 00 000000111111 24456666
Q ss_pred CCCCcccCCCCccCCCCccccccccchhhhhhhhhcccccccccCCCccEEEEecCCCeEeEEeec
Q 005352 630 SFPKGCATWPEEKLPALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFLNY 695 (701)
Q Consensus 630 s~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivTgg~DG~Irvw~~~ 695 (701)
+.++.+++|+......+..+.+| .+.+.+++++++ +.+|+||+.||.|++|+.-
T Consensus 311 ~~~~~i~v~d~~~~~~~~~~~~~-----------~~~v~~~~~s~~-~~~l~s~~~dg~i~iw~~~ 364 (408)
T 4a11_B 311 PYGSTIAVYTVYSGEQITMLKGH-----------YKTVDCCVFQSN-FQELYSGSRDCNILAWVPS 364 (408)
T ss_dssp EETTEEEEEETTTCCEEEEECCC-----------SSCEEEEEEETT-TTEEEEEETTSCEEEEEEC
T ss_pred ecCCEEEEEECcCCcceeeeccC-----------CCeEEEEEEcCC-CCEEEEECCCCeEEEEeCC
Confidence 78899999999988887777666 467888889998 9999999999999999853
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=6.9e-30 Score=278.17 Aligned_cols=273 Identities=18% Similarity=0.385 Sum_probs=223.1
Q ss_pred cccCcceeeecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEee
Q 005352 201 DKQGEGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVV 280 (701)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~ 280 (701)
.+...+.++.++++.+++|+.|+.|+||+..... ....+.+|.+.|++++| ++++|++|+.||.|++||+.
T Consensus 131 ~~~~~v~~~~~d~~~l~~g~~dg~i~iwd~~~~~-------~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~ 201 (435)
T 1p22_A 131 ETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLE-------CKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVN 201 (435)
T ss_dssp SSCCCEEEEECCSSEEEEEESSSCEEEEESSSCC-------EEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESS
T ss_pred CCCCcEEEEEECCCEEEEEeCCCeEEEEeCCCCe-------EEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECC
Confidence 3445678899999999999999999999975432 22457789999999999 78899999999999999998
Q ss_pred cCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEE
Q 005352 281 EDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDL 360 (701)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l 360 (701)
+++ .+..+.+|...|.++
T Consensus 202 ~~~--------------------------------------------------------------~~~~~~~h~~~v~~l 219 (435)
T 1p22_A 202 TGE--------------------------------------------------------------MLNTLIHHCEAVLHL 219 (435)
T ss_dssp SCC--------------------------------------------------------------EEEEECCCCSCEEEE
T ss_pred CCc--------------------------------------------------------------EEEEEcCCCCcEEEE
Confidence 764 344567799999999
Q ss_pred EEecCCeEEEEECCCcEEEEECCCCeee---eee-cCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEE-EecC
Q 005352 361 SWSKNNYLLSASIDKTVRLWRVGNDHCL---RVF-PHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD-WVDI 435 (701)
Q Consensus 361 ~~s~~~~l~s~s~dg~I~iWd~~~~~~~---~~~-~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~-~~~~ 435 (701)
+|++ +++++++.||+|++||+.++... ..+ .|...|.+++| ++++|++|+.||.|++||+++++.+. ...|
T Consensus 220 ~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 295 (435)
T 1p22_A 220 RFNN-GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF---DDKYIVSASGDRTIKVWNTSTCEFVRTLNGH 295 (435)
T ss_dssp ECCT-TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE---ETTEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred EEcC-CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe---CCCEEEEEeCCCeEEEEECCcCcEEEEEcCC
Confidence 9973 49999999999999999988765 333 38899999999 56899999999999999999998774 4568
Q ss_pred CCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEe
Q 005352 436 RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQ 515 (701)
Q Consensus 436 ~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd 515 (701)
...|.++++ +++.+++|+.||.|++||+++++.... ...|...|.+++| ++.+|++|+.||.|++||
T Consensus 296 ~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~--------~~~h~~~v~~~~~---~~~~l~sg~~dg~i~vwd 362 (435)
T 1p22_A 296 KRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRV--------LEGHEELVRCIRF---DNKRIVSGAYDGKIKVWD 362 (435)
T ss_dssp SSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEE--------ECCCSSCEEEEEC---CSSEEEEEETTSCEEEEE
T ss_pred CCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEE--------EeCCcCcEEEEEe---cCCEEEEEeCCCcEEEEE
Confidence 889999988 467999999999999999998765432 2346678999988 568999999999999999
Q ss_pred CCccc---------eeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCC
Q 005352 516 GPNVI---------GKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEE 563 (701)
Q Consensus 516 ~~~~~---------~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~ 563 (701)
+.... .......|...|.+++| ++.+|++|+.||.|++||+.+...
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~ 417 (435)
T 1p22_A 363 LVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPA 417 (435)
T ss_dssp HHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC------
T ss_pred CCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCC
Confidence 86433 33444558899999999 788999999999999999988763
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.97 E-value=6.8e-30 Score=267.35 Aligned_cols=299 Identities=13% Similarity=0.140 Sum_probs=214.1
Q ss_pred EEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCC----eeeeeec-CCCCeEEEEEeeC-CCCEEEEEEcCCcEE
Q 005352 348 HEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGND----HCLRVFP-HSNYVTCVHFNPV-DDNYFISGSIDGKVR 420 (701)
Q Consensus 348 ~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~----~~~~~~~-h~~~V~~l~f~p~-~~~~l~sgs~dg~v~ 420 (701)
..+.+|.+.|++++|+|++ +|++++.||.|++||+.++ +.+..+. |...|++++|+|. ++++|++++.||.|+
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~ 84 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence 4568999999999999999 9999999999999999876 3445554 8999999999984 489999999999999
Q ss_pred EEeCCCCc----------EEEEecCCCcEEEEEEeeC--CCeEEEEecCCcEEEEECCCCeeeeeeeEEe-----ecccC
Q 005352 421 IWAVLSCH----------VVDWVDIRQIVTAVCYRPD--GQGGIVGSMMGDCRFYNVSDNHLELDAEICV-----HSKKK 483 (701)
Q Consensus 421 iwd~~~~~----------~~~~~~~~~~i~~i~~sp~--g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~-----~~~~~ 483 (701)
+||+.+++ ......|...|.+++|+|+ +++|++++.||.|++||+++.+......... .....
T Consensus 85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 164 (351)
T 3f3f_A 85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA 164 (351)
T ss_dssp EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence 99998863 3355578899999999999 9999999999999999998776433222111 11123
Q ss_pred CCCCCeeEEEEecC--CCCEEEEEECCCcEEEEeCCccce--eeecccCCCCeEEEEEecCC----CEEEEEeCCCcEEE
Q 005352 484 APCKRITGFQFLPQ--DSSKVMVSCADSQVRILQGPNVIG--KYKGLRRSGNQLSACFTSDG----KHIVSAGEDSNVYM 555 (701)
Q Consensus 484 ~~~~~i~~l~~~p~--~~~~l~~~s~dg~I~iwd~~~~~~--~~~~~~~~~~v~~l~~s~dg----~~l~sgs~Dg~I~i 555 (701)
.+...+.++.|+|+ ++..+++++.++.+.+|+...... ......|...|.+++|+|++ ++|++|+.||.|++
T Consensus 165 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~i 244 (351)
T 3f3f_A 165 NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRI 244 (351)
T ss_dssp SCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEE
T ss_pred CcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEE
Confidence 56678999999995 489999999999998888765433 34445588999999999998 89999999999999
Q ss_pred EeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCCcc
Q 005352 556 WNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGC 635 (701)
Q Consensus 556 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~ 635 (701)
||+.++........ .. .. .......+.................+
T Consensus 245 wd~~~~~~~~~~~~-~~--------~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (351)
T 3f3f_A 245 FKITEKLSPLASEE-SL--------TN---------------------------SNMFDNSADVDMDAQGRSDSNTEEKA 288 (351)
T ss_dssp EEEEECC-------------------------------------------------------------------------
T ss_pred EeCCCCcCccccCC-cc--------cc---------------------------eeccCCCcccccccccccccccceee
Confidence 99987653211000 00 00 00000011100111111223344455
Q ss_pred cCCCCccCCCCccccccccchhhhhhhhhcccccccccCCCccEEEEecCCCeEeEEee
Q 005352 636 ATWPEEKLPALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFLN 694 (701)
Q Consensus 636 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivTgg~DG~Irvw~~ 694 (701)
.+|+......+..+.+| ...|.+++++++ +.+|+||+.||.|++|+.
T Consensus 289 ~~~~~~~~~~~~~~~~h-----------~~~v~~~~~s~~-~~~l~s~~~dg~v~iw~~ 335 (351)
T 3f3f_A 289 ELQSNLQVELLSEHDDH-----------NGEVWSVSWNLT-GTILSSAGDDGKVRLWKA 335 (351)
T ss_dssp --CCSEEEEEEEEECTT-----------SSCEEEEEECSS-SCCEEEEETTSCEEEEEE
T ss_pred eecccccccEEEEEecc-----------cccEEEEEEcCC-CCEEEEecCCCcEEEEec
Confidence 67776666666666555 467888899998 999999999999999984
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.8e-30 Score=278.56 Aligned_cols=261 Identities=16% Similarity=0.303 Sum_probs=197.4
Q ss_pred cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeec
Q 005352 248 AHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRT 327 (701)
Q Consensus 248 ~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (701)
.|.+.|++|+|+|+|++||+|+.||.|+||++.+++........
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~------------------------------------ 69 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRG------------------------------------ 69 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCC------------------------------------
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCccccc------------------------------------
Confidence 37899999999999999999999999999999876421100000
Q ss_pred CCccEEEcCCccccccCCCeEEEcCCc------------cCeEEEEEecCC---eEEEEECCCcEEEEECCCCeee----
Q 005352 328 SESACVVFPPKVFRILEKPLHEFHGHS------------GEILDLSWSKNN---YLLSASIDKTVRLWRVGNDHCL---- 388 (701)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~h~------------~~I~~l~~s~~~---~l~s~s~dg~I~iWd~~~~~~~---- 388 (701)
.-+....+.+|. ..|.+++|+|++ +|++++.|++|++||+.++...
T Consensus 70 ---------------~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~ 134 (447)
T 3dw8_B 70 ---------------EYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGY 134 (447)
T ss_dssp ---------------CEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECC
T ss_pred ---------------ceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCccee
Confidence 002345667887 889999999985 8999999999999999765432
Q ss_pred -----------------------------------eee--cCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCC-CcEE
Q 005352 389 -----------------------------------RVF--PHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS-CHVV 430 (701)
Q Consensus 389 -----------------------------------~~~--~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~-~~~~ 430 (701)
..+ .|...|++++|+| ++++|++| .|+.|++||+.+ ++..
T Consensus 135 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~ 212 (447)
T 3dw8_B 135 NLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINS-DYETYLSA-DDLRINLWHLEITDRSF 212 (447)
T ss_dssp SCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECT-TSSEEEEE-CSSEEEEEETTEEEEEE
T ss_pred cccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcC-CCCEEEEe-CCCeEEEEECCCCCcee
Confidence 122 3899999999999 99999998 799999999984 4444
Q ss_pred E--------EecCCCcEEEEEEeeCC-CeEEEEecCCcEEEEECCCCeeeeeeeEEeeccc--------CCCCCCeeEEE
Q 005352 431 D--------WVDIRQIVTAVCYRPDG-QGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKK--------KAPCKRITGFQ 493 (701)
Q Consensus 431 ~--------~~~~~~~i~~i~~sp~g-~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~--------~~~~~~i~~l~ 493 (701)
. ...|...|++++|+|++ +.|++|+.||.|++||+++..........+.... ..+...|.+++
T Consensus 213 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 292 (447)
T 3dw8_B 213 NIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVK 292 (447)
T ss_dssp EEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEE
T ss_pred eeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEE
Confidence 4 33688899999999998 9999999999999999998764110000111100 01113899999
Q ss_pred EecCCCCEEEEEECCCcEEEEeCCc-cc--eeeecccCCC-------------CeEEEEEecCCCEEEEEeCCCcEEEEe
Q 005352 494 FLPQDSSKVMVSCADSQVRILQGPN-VI--GKYKGLRRSG-------------NQLSACFTSDGKHIVSAGEDSNVYMWN 557 (701)
Q Consensus 494 ~~p~~~~~l~~~s~dg~I~iwd~~~-~~--~~~~~~~~~~-------------~v~~l~~s~dg~~l~sgs~Dg~I~iWd 557 (701)
|+| ++.+|++++. +.|++||+.. .. ..+..+.... .+..++|+|++++|++|+.||.|++||
T Consensus 293 ~s~-~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd 370 (447)
T 3dw8_B 293 FSH-SGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFD 370 (447)
T ss_dssp ECT-TSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEE
T ss_pred ECC-CCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEE
Confidence 999 7899999999 9999999975 32 3333321100 134599999999999999999999999
Q ss_pred CCCCCC
Q 005352 558 CIGHEE 563 (701)
Q Consensus 558 ~~~~~~ 563 (701)
+.+++.
T Consensus 371 ~~~~~~ 376 (447)
T 3dw8_B 371 RNTKRD 376 (447)
T ss_dssp TTTCCE
T ss_pred cCCCcc
Confidence 998763
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-29 Score=265.96 Aligned_cols=282 Identities=11% Similarity=0.069 Sum_probs=227.6
Q ss_pred cccCcceeee--cCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCC-EEEEEeCCCcEEEE
Q 005352 201 DKQGEGERVR--LNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQ-YLASAGDDGVVRLW 277 (701)
Q Consensus 201 ~~~~~~~~~~--~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~-~Lasgs~Dg~I~iW 277 (701)
.|.+.+.++. +++..+++++.|+.|+||++....... ....+.+|...|++++|+|+++ +|++|+.||.|++|
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~w 84 (342)
T 1yfq_A 9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNV----DLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKV 84 (342)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEE----EEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEE
T ss_pred CCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccc----cceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEE
Confidence 4556666554 455678889999999999986543111 1134558999999999999999 99999999999999
Q ss_pred Ee-ecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcC--Cc
Q 005352 278 QV-VEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHG--HS 354 (701)
Q Consensus 278 d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~ 354 (701)
|+ .+++ ...+.+ |.
T Consensus 85 d~~~~~~---------------------------------------------------------------~~~~~~~~~~ 101 (342)
T 1yfq_A 85 DLIGSPS---------------------------------------------------------------FQALTNNEAN 101 (342)
T ss_dssp CSSSSSS---------------------------------------------------------------EEECBSCCCC
T ss_pred EeccCCc---------------------------------------------------------------eEeccccCCC
Confidence 98 6653 133456 99
Q ss_pred cCeEEEEEecCC-eEEEEECCCcEEEEECCC---------CeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeC
Q 005352 355 GEILDLSWSKNN-YLLSASIDKTVRLWRVGN---------DHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAV 424 (701)
Q Consensus 355 ~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~---------~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~ 424 (701)
..|.+++|+| + +|++++.|+.|++||+++ ++++..+.|...|.+++|+| +. +++++.|+.|++||+
T Consensus 102 ~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~--l~~~~~d~~i~i~d~ 177 (342)
T 1yfq_A 102 LGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNS-SR--LIVGMNNSQVQWFRL 177 (342)
T ss_dssp SCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECS-SE--EEEEESTTEEEEEES
T ss_pred CceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecC-Cc--EEEEeCCCeEEEEEC
Confidence 9999999999 7 999999999999999988 77788888999999999998 54 999999999999999
Q ss_pred CC-CcE---EEEecCCCcEEEEEEee-CCCeEEEEecCCcEEEEECCCC------eeeeeeeEEeecc---cCCCCCCee
Q 005352 425 LS-CHV---VDWVDIRQIVTAVCYRP-DGQGGIVGSMMGDCRFYNVSDN------HLELDAEICVHSK---KKAPCKRIT 490 (701)
Q Consensus 425 ~~-~~~---~~~~~~~~~i~~i~~sp-~g~~l~~gs~dg~v~i~d~~~~------~~~~~~~~~~~~~---~~~~~~~i~ 490 (701)
++ +.. .....+...+.+++|+| +++.+++++.+|.|++|+++.. ..... +..+.. ...+...|.
T Consensus 178 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~ 255 (342)
T 1yfq_A 178 PLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFA--FRCHRLNLKDTNLAYPVN 255 (342)
T ss_dssp SCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEE--EECCCCCTTCCSSCCCEE
T ss_pred CccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCccccccccee--eecccccccccccceeEE
Confidence 98 542 24446788999999999 9999999999999999999876 22211 111110 012345899
Q ss_pred EEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccC-CCCeEEEEEecCCCEEEEEeCCCc-EEEEeC
Q 005352 491 GFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRR-SGNQLSACFTSDGKHIVSAGEDSN-VYMWNC 558 (701)
Q Consensus 491 ~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~-~~~v~~l~~s~dg~~l~sgs~Dg~-I~iWd~ 558 (701)
+++|+| ++.+|++++.|+.|++||+.+.........| ...|.+++ |++++|++++.||. .+.|..
T Consensus 256 ~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 256 SIEFSP-RHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp EEEECT-TTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTHHHHCSSS
T ss_pred EEEEcC-CCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCcccccccc
Confidence 999999 7889999999999999999877766666666 88999999 99999999999998 655554
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.97 E-value=5.3e-30 Score=268.74 Aligned_cols=248 Identities=14% Similarity=0.125 Sum_probs=205.6
Q ss_pred eccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEee
Q 005352 246 IQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLR 325 (701)
Q Consensus 246 l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (701)
..+|.+.|++++|+|++++|++|+.||.|+||++.++...
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~---------------------------------------- 46 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKN---------------------------------------- 46 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTE----------------------------------------
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCcc----------------------------------------
Confidence 3579999999999999999999999999999999875310
Q ss_pred ecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC--eEEEEECCCcEEEEEC-CCCeeeeeec--CCCCeEEE
Q 005352 326 RTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLSASIDKTVRLWRV-GNDHCLRVFP--HSNYVTCV 400 (701)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~--~l~s~s~dg~I~iWd~-~~~~~~~~~~--h~~~V~~l 400 (701)
.+...+.+|...|.+++|+|++ +|++++.||.|++||+ .+++...... |...|.++
T Consensus 47 -------------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l 107 (342)
T 1yfq_A 47 -------------------VDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRI 107 (342)
T ss_dssp -------------------EEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEE
T ss_pred -------------------ccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceEeccccCCCCceEEE
Confidence 1123345799999999999987 5999999999999999 8888766666 99999999
Q ss_pred EEeeCCCCEEEEEEcCCcEEEEeCCC---------CcEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCC-Cee
Q 005352 401 HFNPVDDNYFISGSIDGKVRIWAVLS---------CHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSD-NHL 470 (701)
Q Consensus 401 ~f~p~~~~~l~sgs~dg~v~iwd~~~---------~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~-~~~ 470 (701)
+|+| +++|++++.|+.|++||+++ ++.+....+...|.+++|+|++ +++++.++.|++||+++ ...
T Consensus 108 ~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~ 183 (342)
T 1yfq_A 108 CKYG--DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDD 183 (342)
T ss_dssp EEET--TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTC
T ss_pred EeCC--CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCc--EEEEeCCCeEEEEECCccccc
Confidence 9998 78999999999999999987 6666666688999999999987 99999999999999987 432
Q ss_pred eeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCcc------ceeeecccC---------CCCeEEE
Q 005352 471 ELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV------IGKYKGLRR---------SGNQLSA 535 (701)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~------~~~~~~~~~---------~~~v~~l 535 (701)
.... ....+...+.+++|+|.++.++++++.|+.|++|+.... ........| ...|.++
T Consensus 184 ~~~~------~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 257 (342)
T 1yfq_A 184 NGTI------EESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSI 257 (342)
T ss_dssp CCEE------EECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEE
T ss_pred ccee------eecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEE
Confidence 2111 123455689999999834689999999999999998654 333333334 3499999
Q ss_pred EEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 536 CFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 536 ~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
+|+|++++|++++.||.|++||+.+++
T Consensus 258 ~~s~~~~~l~~~~~dg~i~vwd~~~~~ 284 (342)
T 1yfq_A 258 EFSPRHKFLYTAGSDGIISCWNLQTRK 284 (342)
T ss_dssp EECTTTCCEEEEETTSCEEEEETTTTE
T ss_pred EEcCCCCEEEEecCCceEEEEcCccHh
Confidence 999999999999999999999998765
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.97 E-value=6.4e-29 Score=269.23 Aligned_cols=288 Identities=17% Similarity=0.208 Sum_probs=228.7
Q ss_pred cEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCcc
Q 005352 252 SILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESA 331 (701)
Q Consensus 252 ~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (701)
.+..|+||+++ +||+|. |++|+|||+.+++....
T Consensus 107 y~~~l~wS~~n-~lAvgl-d~tV~lWd~~tg~~~~~-------------------------------------------- 140 (420)
T 4gga_A 107 YLNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQL-------------------------------------------- 140 (420)
T ss_dssp TCBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEE--------------------------------------------
T ss_pred cceeEEECCCC-EEEEEe-CCEEEEEECCCCCEEEE--------------------------------------------
Confidence 35679999764 777664 99999999988764322
Q ss_pred EEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCE
Q 005352 332 CVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNY 409 (701)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~ 409 (701)
..+.+|...|++|+|+|++ +|++|+.||+|+|||+.+++++..+. |...+.+++++ +.+
T Consensus 141 ----------------~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~---~~~ 201 (420)
T 4gga_A 141 ----------------LQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN---SYI 201 (420)
T ss_dssp ----------------EECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE---TTE
T ss_pred ----------------EEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC---CCE
Confidence 2335688899999999999 99999999999999999999998887 88999998875 579
Q ss_pred EEEEEcCCcEEEEeCCCCcE--EEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCC
Q 005352 410 FISGSIDGKVRIWAVLSCHV--VDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCK 487 (701)
Q Consensus 410 l~sgs~dg~v~iwd~~~~~~--~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~ 487 (701)
|++|+.|+.+++||...... .....|...+..+.++|+++++++++.|+.+++|++..++..... ......+..
T Consensus 202 l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~----~~~~~~~~~ 277 (420)
T 4gga_A 202 LSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVP----LQTFTQHQG 277 (420)
T ss_dssp EEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCC----SEEECCCSS
T ss_pred EEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeecccccccee----eeeecccCC
Confidence 99999999999999986543 356678999999999999999999999999999999876532211 111345667
Q ss_pred CeeEEEEecCCCCEEEEEE--CCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEe--CCCcEEEEeCCCCCC
Q 005352 488 RITGFQFLPQDSSKVMVSC--ADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAG--EDSNVYMWNCIGHEE 563 (701)
Q Consensus 488 ~i~~l~~~p~~~~~l~~~s--~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs--~Dg~I~iWd~~~~~~ 563 (701)
.|.+++|+|.+..++++++ .|+.|++||+.+........ +...+.++.|+|+++.|++++ .|+.|+|||+.+++.
T Consensus 278 ~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~-~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~ 356 (420)
T 4gga_A 278 AVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAK 356 (420)
T ss_dssp CEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCE
T ss_pred ceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeec-cccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcE
Confidence 8999999998888887754 69999999998766555443 557899999999999998875 799999999987752
Q ss_pred CCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCCcccCCCCccC
Q 005352 564 PAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEKL 643 (701)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~~~ 643 (701)
. ..+ ..+...+..++|+|+ +..+++++.|+++++|+..+.
T Consensus 357 v--------~~l----------------------------~gH~~~V~~l~~spd----g~~l~S~s~D~tvriWdv~~~ 396 (420)
T 4gga_A 357 V--------AEL----------------------------KGHTSRVLSLTMSPD----GATVASAAADETLRLWRCFEL 396 (420)
T ss_dssp E--------EEE----------------------------CCCSSCEEEEEECTT----SSCEEEEETTTEEEEECCSCS
T ss_pred E--------EEE----------------------------cCCCCCEEEEEEcCC----CCEEEEEecCCeEEEEECCCC
Confidence 1 111 011335677888997 778999999999999998877
Q ss_pred CCCccc
Q 005352 644 PALSQL 649 (701)
Q Consensus 644 ~~~~~~ 649 (701)
.+..+.
T Consensus 397 ~~~~~~ 402 (420)
T 4gga_A 397 DPARRR 402 (420)
T ss_dssp SCC---
T ss_pred Cccchh
Confidence 665443
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.8e-29 Score=271.80 Aligned_cols=325 Identities=16% Similarity=0.238 Sum_probs=219.7
Q ss_pred cCcceee--ecCccccccccccceEEEEEccCccch----hhhcccCceeccCC------------CcEEEEEEccCC--
Q 005352 203 QGEGERV--RLNEEDAMFCSKVQRVKVYHCKKRSKE----LSALYKGQEIQAHD------------GSILTMKFSPDG-- 262 (701)
Q Consensus 203 ~~~~~~~--~~~~~~~~~~~~d~~v~vw~~~~~~~~----~~~~~~~~~l~~H~------------~~I~~l~fspdg-- 262 (701)
.+.+.++ ++++..+++|+.|+.|+||++...... .........+++|. +.|++++|+|++
T Consensus 28 ~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~ 107 (447)
T 3dw8_B 28 ADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNA 107 (447)
T ss_dssp GGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSS
T ss_pred cCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCc
Confidence 3445444 455678889999999999998754310 11112235678898 889999999998
Q ss_pred CEEEEEeCCCcEEEEEeecCeeeeee-cCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCcccc
Q 005352 263 QYLASAGDDGVVRLWQVVEDERLTEV-DIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFR 341 (701)
Q Consensus 263 ~~Lasgs~Dg~I~iWd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (701)
.+|++++.|+.|++|++.++...... ....... .+. .. ..+..+... .+. +..+.
T Consensus 108 ~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g-~~~-~~---~~~~~~~~~-----~~~--------------~~~~~ 163 (447)
T 3dw8_B 108 AQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDG-RYR-DP---TTVTTLRVP-----VFR--------------PMDLM 163 (447)
T ss_dssp SEEEEEECSSCEEEEEEEEEEEEEECCSCC----------C---CCCCSCCCC-----EEE--------------EEEEE
T ss_pred ceEEEeCCCCeEEEEecccccCCcceecccCccc-ccc-Cc---ccccceEec-----ccc--------------chhee
Confidence 89999999999999999876543211 1100000 000 00 000000000 000 00000
Q ss_pred ccCCCeEEE-cCCccCeEEEEEecCC-eEEEEECCCcEEEEECC-CCeeeeee--------cCCCCeEEEEEeeCCC-CE
Q 005352 342 ILEKPLHEF-HGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVG-NDHCLRVF--------PHSNYVTCVHFNPVDD-NY 409 (701)
Q Consensus 342 ~~~~~~~~~-~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~-~~~~~~~~--------~h~~~V~~l~f~p~~~-~~ 409 (701)
....+...+ .+|...|.+++|+|++ +|++| .|++|++||+. .++++..+ .|...|++++|+| ++ ++
T Consensus 164 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~ 241 (447)
T 3dw8_B 164 VEASPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHP-NSCNT 241 (447)
T ss_dssp EEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECS-SCTTE
T ss_pred eeccceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECC-CCCcE
Confidence 011223333 6899999999999999 88888 89999999999 45555533 4899999999999 76 99
Q ss_pred EEEEEcCCcEEEEeCCCCcE----E-EEecCCC------------cEEEEEEeeCCCeEEEEecCCcEEEEECCC-Ceee
Q 005352 410 FISGSIDGKVRIWAVLSCHV----V-DWVDIRQ------------IVTAVCYRPDGQGGIVGSMMGDCRFYNVSD-NHLE 471 (701)
Q Consensus 410 l~sgs~dg~v~iwd~~~~~~----~-~~~~~~~------------~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~-~~~~ 471 (701)
|++|+.||.|++||+++++. + .+..+.. .|++++|+|++++|++++. +.|++||++. ++..
T Consensus 242 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~ 320 (447)
T 3dw8_B 242 FVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPV 320 (447)
T ss_dssp EEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCS
T ss_pred EEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCcccc
Confidence 99999999999999998875 3 3444443 8999999999999999999 9999999986 4432
Q ss_pred eeeeEEeecccCC---------CCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceee-e-----------------
Q 005352 472 LDAEICVHSKKKA---------PCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKY-K----------------- 524 (701)
Q Consensus 472 ~~~~~~~~~~~~~---------~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~-~----------------- 524 (701)
... ..+..... ....+..++|+| ++.+|++++.|+.|++||+.+..... .
T Consensus 321 ~~~--~~~~~~~~~l~~~~~~~~i~~~~~~~~s~-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (447)
T 3dw8_B 321 ETY--QVHEYLRSKLCSLYENDCIFDKFECCWNG-SDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKV 397 (447)
T ss_dssp CCE--ESCGGGTTTHHHHHHTSGGGCCCCEEECT-TSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCE
T ss_pred cee--eccccccccccccccccccccceEEEECC-CCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccc
Confidence 211 11110000 001134589999 78999999999999999987543221 1
Q ss_pred --------------cccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 005352 525 --------------GLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNC 558 (701)
Q Consensus 525 --------------~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~ 558 (701)
.......|..++|+|++.+|++++.++ +++|.-
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 398 CASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp ECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred cccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-eeeecc
Confidence 112345789999999999999998775 888864
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-29 Score=272.03 Aligned_cols=289 Identities=15% Similarity=0.193 Sum_probs=224.8
Q ss_pred cCCCc--EEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEee
Q 005352 248 AHDGS--ILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLR 325 (701)
Q Consensus 248 ~H~~~--I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (701)
+|... +.++.|+ +..+++++.|+.|++||+.+++....+
T Consensus 89 ~~~~~~~~~~~~~s--~~~l~~~~~d~~v~lw~~~~~~~~~~~------------------------------------- 129 (401)
T 4aez_A 89 GIIDDYYLNLLDWS--NLNVVAVALERNVYVWNADSGSVSALA------------------------------------- 129 (401)
T ss_dssp TCCCCTTCBCEEEC--TTSEEEEEETTEEEEEETTTCCEEEEE-------------------------------------
T ss_pred CCcCCceEEEEeec--CCCEEEEECCCeEEEeeCCCCcEeEee-------------------------------------
Confidence 55554 4445565 456889999999999999877532211
Q ss_pred ecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEe
Q 005352 326 RTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFN 403 (701)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~ 403 (701)
...|...|.+++|+|++ +|++++.||.|++||+.+++.+..+. |...|.+++|+
T Consensus 130 ------------------------~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~ 185 (401)
T 4aez_A 130 ------------------------ETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN 185 (401)
T ss_dssp ------------------------ECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEE
T ss_pred ------------------------ecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEEC
Confidence 12378899999999999 99999999999999999999888886 89999999995
Q ss_pred eCCCCEEEEEEcCCcEEEEeCCC-Cc-EEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecc
Q 005352 404 PVDDNYFISGSIDGKVRIWAVLS-CH-VVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSK 481 (701)
Q Consensus 404 p~~~~~l~sgs~dg~v~iwd~~~-~~-~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~ 481 (701)
+++|++++.||.|++||++. .. ......|...|.+++|+|++++|++|+.||.|++||+++......
T Consensus 186 ---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~-------- 254 (401)
T 4aez_A 186 ---RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFT-------- 254 (401)
T ss_dssp ---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEE--------
T ss_pred ---CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEE--------
Confidence 47999999999999999984 33 335667899999999999999999999999999999998654321
Q ss_pred cCCCCCCeeEEEEecCCCCEEEEEE--CCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEe--CCCcEEEEe
Q 005352 482 KKAPCKRITGFQFLPQDSSKVMVSC--ADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAG--EDSNVYMWN 557 (701)
Q Consensus 482 ~~~~~~~i~~l~~~p~~~~~l~~~s--~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs--~Dg~I~iWd 557 (701)
...+...|.+++|+|++..++++++ .|+.|++||+.+....... .+...|.+++|+|++++|++++ .||.|++|+
T Consensus 255 ~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~ 333 (401)
T 4aez_A 255 KTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTV-DAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWS 333 (401)
T ss_dssp ECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEE-ECSSCEEEEEECSSSSEEEEEECTTTCEEEEEE
T ss_pred ecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEE-eCCCcEEEEEECCCCCeEEEEeecCCCcEEEEe
Confidence 2346678999999997677788776 7999999999866544433 3677899999999999999954 899999999
Q ss_pred CCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCCcccC
Q 005352 558 CIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCAT 637 (701)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~ 637 (701)
+.+++... ... ...+...+..++|+|+ +..+++++.|+.+++
T Consensus 334 ~~~~~~~~------~~~----------------------------~~~h~~~v~~~~~s~d----g~~l~s~~~dg~i~i 375 (401)
T 4aez_A 334 YSSSGLTK------QVD----------------------------IPAHDTRVLYSALSPD----GRILSTAASDENLKF 375 (401)
T ss_dssp EETTEEEE------EEE----------------------------EECCSSCCCEEEECTT----SSEEEEECTTSEEEE
T ss_pred cCCcccee------EEE----------------------------ecCCCCCEEEEEECCC----CCEEEEEeCCCcEEE
Confidence 87754100 000 0011335667888997 678899999999999
Q ss_pred CCCccCCCCccc
Q 005352 638 WPEEKLPALSQL 649 (701)
Q Consensus 638 W~~~~~~~~~~~ 649 (701)
|+......+...
T Consensus 376 w~~~~~~~~~~~ 387 (401)
T 4aez_A 376 WRVYDGDHVKRP 387 (401)
T ss_dssp EECCC-------
T ss_pred EECCCCcccccc
Confidence 999887765543
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-29 Score=295.23 Aligned_cols=254 Identities=19% Similarity=0.272 Sum_probs=211.1
Q ss_pred ceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEE
Q 005352 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (701)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (701)
+.+.+|.++|++++|+|+|++|++|+.||.|+|||+..+..
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~--------------------------------------- 43 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH--------------------------------------- 43 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEE---------------------------------------
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCC---------------------------------------
Confidence 35788999999999999999999999999999999875421
Q ss_pred eeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecC--C-eEEEEECCCcEEEEECCCCe--eeeeec-CCCCe
Q 005352 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN--N-YLLSASIDKTVRLWRVGNDH--CLRVFP-HSNYV 397 (701)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~--~-~l~s~s~dg~I~iWd~~~~~--~~~~~~-h~~~V 397 (701)
+.+..+.+|.+.|++++|+++ + +|++|+.||+|++||+.+++ .+..+. |...|
T Consensus 44 ---------------------~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V 102 (753)
T 3jro_A 44 ---------------------KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASV 102 (753)
T ss_dssp ---------------------EEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCE
T ss_pred ---------------------ccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCe
Confidence 234567889999999999987 6 99999999999999999986 444444 89999
Q ss_pred EEEEEeeCC--CCEEEEEEcCCcEEEEeCCCCc---EEEEecCCCcEEEEEEee-------------CCCeEEEEecCCc
Q 005352 398 TCVHFNPVD--DNYFISGSIDGKVRIWAVLSCH---VVDWVDIRQIVTAVCYRP-------------DGQGGIVGSMMGD 459 (701)
Q Consensus 398 ~~l~f~p~~--~~~l~sgs~dg~v~iwd~~~~~---~~~~~~~~~~i~~i~~sp-------------~g~~l~~gs~dg~ 459 (701)
++++|+| + +++|++|+.||.|++||++++. ......|...|.+++|+| ++..+++|+.||.
T Consensus 103 ~~v~~sp-~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~ 181 (753)
T 3jro_A 103 NSVQWAP-HEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNL 181 (753)
T ss_dssp EEEEECC-GGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSC
T ss_pred EEEEECC-CCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCe
Confidence 9999999 7 8999999999999999998873 345667889999999999 5899999999999
Q ss_pred EEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCC--CCEEEEEECCCcEEEEeCCccc-----eeeecccCCCCe
Q 005352 460 CRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQD--SSKVMVSCADSQVRILQGPNVI-----GKYKGLRRSGNQ 532 (701)
Q Consensus 460 v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~--~~~l~~~s~dg~I~iwd~~~~~-----~~~~~~~~~~~v 532 (701)
|++||+++...... .......|...|++++|+|++ +.++++++.||.|++||+.... .......|...|
T Consensus 182 I~iwd~~~~~~~~~----~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v 257 (753)
T 3jro_A 182 VKIWKYNSDAQTYV----LESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVL 257 (753)
T ss_dssp EEEEEEETTTTEEE----EEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCC
T ss_pred EEEEeccCCcccce----eeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCce
Confidence 99999987643221 111234567889999999943 8999999999999999987643 233334478899
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 533 LSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 533 ~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
++++|+|+|++|++|+.||.|++|++.++.
T Consensus 258 ~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 258 WRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp CCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred EEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 999999999999999999999999998654
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.97 E-value=7.3e-29 Score=255.55 Aligned_cols=247 Identities=17% Similarity=0.240 Sum_probs=196.4
Q ss_pred cccCcceee--ecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEcc--CCCEEEEEeCCCcEEE
Q 005352 201 DKQGEGERV--RLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSP--DGQYLASAGDDGVVRL 276 (701)
Q Consensus 201 ~~~~~~~~~--~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp--dg~~Lasgs~Dg~I~i 276 (701)
.|.+.+.++ ++++..+++++.|+.|+||+...... .....+.+|.++|++++|+| ++++||||+.|++|+|
T Consensus 7 ~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~-----~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~i 81 (297)
T 2pm7_B 7 AHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH-----KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMI 81 (297)
T ss_dssp SCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB-----CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEE
T ss_pred CCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc-----EEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEE
Confidence 466666554 45677899999999999999864321 12356889999999999986 3899999999999999
Q ss_pred EEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccC
Q 005352 277 WQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGE 356 (701)
Q Consensus 277 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 356 (701)
||+.+++. ..+..+.+|...
T Consensus 82 Wd~~~~~~------------------------------------------------------------~~~~~~~~h~~~ 101 (297)
T 2pm7_B 82 WKEENGRW------------------------------------------------------------SQIAVHAVHSAS 101 (297)
T ss_dssp EEBSSSCB------------------------------------------------------------CCCEEECCCSSC
T ss_pred EEcCCCce------------------------------------------------------------EEEEEeecCCCc
Confidence 99876531 233456789999
Q ss_pred eEEEEEecC--C-eEEEEECCCcEEEEECCCCee---eeeecCCCCeEEEEEeeCC-------------CCEEEEEEcCC
Q 005352 357 ILDLSWSKN--N-YLLSASIDKTVRLWRVGNDHC---LRVFPHSNYVTCVHFNPVD-------------DNYFISGSIDG 417 (701)
Q Consensus 357 I~~l~~s~~--~-~l~s~s~dg~I~iWd~~~~~~---~~~~~h~~~V~~l~f~p~~-------------~~~l~sgs~dg 417 (701)
|.+++|+|+ + +|++++.|++|++||++++.. .....|...|.+++|+| + +++|++|+.|+
T Consensus 102 v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~~~~~~~~~~~~~~l~sgs~D~ 180 (297)
T 2pm7_B 102 VNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAP-ATIEEDGEHNGTKESRKFVTGGADN 180 (297)
T ss_dssp EEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECC-CC------------CCEEEEEETTS
T ss_pred eeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecC-CcccccccCCCCCCcceEEEEcCCC
Confidence 999999997 6 999999999999999987632 22234899999999999 4 47999999999
Q ss_pred cEEEEeCCCCc----EE-EEecCCCcEEEEEEeeCC---CeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCe
Q 005352 418 KVRIWAVLSCH----VV-DWVDIRQIVTAVCYRPDG---QGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRI 489 (701)
Q Consensus 418 ~v~iwd~~~~~----~~-~~~~~~~~i~~i~~sp~g---~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i 489 (701)
+|++||+++++ .. .+..|...|.+++|+|++ ++|++++.|++|++||++........ ... ....+...|
T Consensus 181 ~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~--~~~-~~~~~~~~v 257 (297)
T 2pm7_B 181 LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKK--TLL-KEEKFPDVL 257 (297)
T ss_dssp CEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEE--EES-SSSCCSSCE
T ss_pred cEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccce--eee-ecccCCCcE
Confidence 99999998764 33 455788999999999985 89999999999999999864311110 011 123456789
Q ss_pred eEEEEecCCCCEEEEEECCCcEEEEeCC
Q 005352 490 TGFQFLPQDSSKVMVSCADSQVRILQGP 517 (701)
Q Consensus 490 ~~l~~~p~~~~~l~~~s~dg~I~iwd~~ 517 (701)
.+++|+| ++.+|++++.|+.|+||+..
T Consensus 258 ~~~~~s~-~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 258 WRASWSL-SGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp EEEEECS-SSCCEEEEETTSCEEEEEEC
T ss_pred EEEEECC-CCCEEEEEcCCCcEEEEEEC
Confidence 9999999 78999999999999999965
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.1e-28 Score=252.37 Aligned_cols=282 Identities=17% Similarity=0.230 Sum_probs=222.8
Q ss_pred EEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccE
Q 005352 253 ILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESAC 332 (701)
Q Consensus 253 I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (701)
..+|+||+++ +||+| .|++|+|||+.+++.+..+
T Consensus 28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~-------------------------------------------- 61 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLL-------------------------------------------- 61 (318)
T ss_dssp CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEE--------------------------------------------
T ss_pred ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEE--------------------------------------------
Confidence 4679999986 67665 5999999999888644322
Q ss_pred EEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEE
Q 005352 333 VVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYF 410 (701)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l 410 (701)
.+.+|...|++++|+|++ +|++|+.||+|++||+.+++++..+. |...+.++.+ ++.++
T Consensus 62 ----------------~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~---~~~~l 122 (318)
T 4ggc_A 62 ----------------QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW---NSYIL 122 (318)
T ss_dssp ----------------ECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE---ETTEE
T ss_pred ----------------EecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeec---CCCEE
Confidence 235688899999999999 99999999999999999999998886 7777777665 56799
Q ss_pred EEEEcCCcEEEEeCCCCcE--EEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCC
Q 005352 411 ISGSIDGKVRIWAVLSCHV--VDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKR 488 (701)
Q Consensus 411 ~sgs~dg~v~iwd~~~~~~--~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 488 (701)
++++.++.+++|+...... .....|...+..+.+.++++++++++.||.|++||+++++...... .....+...
T Consensus 123 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----~~~~~~~~~ 198 (318)
T 4ggc_A 123 SSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPL----QTFTQHQGA 198 (318)
T ss_dssp EEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCS----EEECCCCSC
T ss_pred EEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccce----eeecccCCc
Confidence 9999999999999987643 3566788999999999999999999999999999998765332211 113345578
Q ss_pred eeEEEEecCCCCEEEE--EECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEe--CCCcEEEEeCCCCCCC
Q 005352 489 ITGFQFLPQDSSKVMV--SCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAG--EDSNVYMWNCIGHEEP 564 (701)
Q Consensus 489 i~~l~~~p~~~~~l~~--~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs--~Dg~I~iWd~~~~~~~ 564 (701)
|..+.++|.+...+.+ ++.++.|++||......... ..+...+..+.|+|++..+++++ .|+.|+|||+.+++..
T Consensus 199 v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~ 277 (318)
T 4ggc_A 199 VKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA-VDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKV 277 (318)
T ss_dssp EEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEE-EECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEE
T ss_pred eEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccc-ccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEE
Confidence 9999999977766644 45689999999886554443 33778899999999999888765 7999999999877621
Q ss_pred CccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCCcccCCCCccCC
Q 005352 565 AHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEKLP 644 (701)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~~~~ 644 (701)
..+ ..+...+..++|+|+ +..+++++.|+.+++|+..+++
T Consensus 278 --------~~l----------------------------~gH~~~V~~l~~spd----g~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 278 --------AEL----------------------------KGHTSRVLSLTMSPD----GATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp --------EEE----------------------------CCCSSCEEEEEECTT----SSCEEEEETTTEEEEECCSCCC
T ss_pred --------EEE----------------------------cCCCCCEEEEEEcCC----CCEEEEEecCCeEEEEECCCCC
Confidence 111 012345677888997 6789999999999999987664
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.2e-29 Score=261.41 Aligned_cols=291 Identities=13% Similarity=0.204 Sum_probs=229.9
Q ss_pred ecccCcceeeecCc-----cccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcE
Q 005352 200 VDKQGEGERVRLNE-----EDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVV 274 (701)
Q Consensus 200 ~~~~~~~~~~~~~~-----~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I 274 (701)
..|.+.+.++.+++ ..+++++.|+.|+||++....... ...+.+|.+.|++++|+|++++|++|+.||.|
T Consensus 36 ~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~-----~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v 110 (368)
T 3mmy_A 36 SSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTI-----PKAQQMHTGPVLDVCWSDDGSKVFTASCDKTA 110 (368)
T ss_dssp SCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEE-----EEEEEECSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred cCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCcee-----EEEeccccCCEEEEEECcCCCEEEEEcCCCcE
Confidence 35677777776665 467889999999999987532221 13577899999999999999999999999999
Q ss_pred EEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCc
Q 005352 275 RLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHS 354 (701)
Q Consensus 275 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 354 (701)
++||+.+++.+ .+.+|.
T Consensus 111 ~iwd~~~~~~~---------------------------------------------------------------~~~~~~ 127 (368)
T 3mmy_A 111 KMWDLSSNQAI---------------------------------------------------------------QIAQHD 127 (368)
T ss_dssp EEEETTTTEEE---------------------------------------------------------------EEEECS
T ss_pred EEEEcCCCCce---------------------------------------------------------------eecccc
Confidence 99999876522 234588
Q ss_pred cCeEEEEE--ecCC-eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEE
Q 005352 355 GEILDLSW--SKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD 431 (701)
Q Consensus 355 ~~I~~l~~--s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~ 431 (701)
..|.+++| ++++ +|++++.|+.|++||+++++++..+.....+.++.+.+ ..+++++.++.+++|+++......
T Consensus 128 ~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~ 204 (368)
T 3mmy_A 128 APVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY---PMAVVATAERGLIVYQLENQPSEF 204 (368)
T ss_dssp SCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEET---TEEEEEEGGGCEEEEECSSSCEEE
T ss_pred CceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecC---CeeEEEeCCCcEEEEEeccccchh
Confidence 99999999 7888 89999999999999999999999998777888887764 588889999999999998765442
Q ss_pred Ee---cCCCcEEEEEEeeCCCe----EEEEecCCcEEEEECCCCee-eeeeeEEeecc------cCCCCCCeeEEEEecC
Q 005352 432 WV---DIRQIVTAVCYRPDGQG----GIVGSMMGDCRFYNVSDNHL-ELDAEICVHSK------KKAPCKRITGFQFLPQ 497 (701)
Q Consensus 432 ~~---~~~~~i~~i~~sp~g~~----l~~gs~dg~v~i~d~~~~~~-~~~~~~~~~~~------~~~~~~~i~~l~~~p~ 497 (701)
.. .....+.++++.++... +++++.+|.|++|+++.... .....+..+.. ...+...|++++|+|
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp- 283 (368)
T 3mmy_A 205 RRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHP- 283 (368)
T ss_dssp EECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECT-
T ss_pred hhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEec-
Confidence 21 23456777888776665 99999999999999987632 11111111110 111223699999999
Q ss_pred CCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 498 DSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 498 ~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
++.+|++++.|+.|++||+.+.........|...|.+++|+|+|++|++++.|+..+.|++.+.+
T Consensus 284 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~~~ 348 (368)
T 3mmy_A 284 VHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQ 348 (368)
T ss_dssp TTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGCCTT
T ss_pred CCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccccccCCC
Confidence 78999999999999999999877666666789999999999999999999999877777765544
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-29 Score=273.16 Aligned_cols=314 Identities=11% Similarity=0.059 Sum_probs=228.8
Q ss_pred CCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecC
Q 005352 249 HDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTS 328 (701)
Q Consensus 249 H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (701)
-...|.+++|+|||+++||++.|++|+ |...++ .+..+......+.|.+.+.
T Consensus 14 ~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~---~l~gh~~~v~~V~FsPdg~----------------------- 65 (588)
T 2j04_A 14 FEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK---DINCNSKNLFHVKEFPLEF----------------------- 65 (588)
T ss_dssp CSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS---CCSSBGGGTEEEEEECCCC-----------------------
T ss_pred hhccEEEEEECCCCCEEEEEcCCceee--cccccc---eecCCCccEEEEEECCCCC-----------------------
Confidence 457899999999999999999999999 654443 2333333344444444331
Q ss_pred CccEEEcCCccccccC-CCeEEEc-CCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeecCCC-----CeEEE
Q 005352 329 ESACVVFPPKVFRILE-KPLHEFH-GHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSN-----YVTCV 400 (701)
Q Consensus 329 ~~~~~~~~~~~~~~~~-~~~~~~~-~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~h~~-----~V~~l 400 (701)
.+.+++.. +....+. .|...|.+++|+|+| +|++++.||+|++||... ++..+.|.. .|.++
T Consensus 66 --------~~~~~~~~~~~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~~~~~~~~~sv~sv 135 (588)
T 2j04_A 66 --------ENKLDFELAQQNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLDSKGNLSSRTYHCF 135 (588)
T ss_dssp --------CCTTTTSCCCSSCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECCCSSCSTTTCEEEE
T ss_pred --------cceEEEEeCCCceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeeccCCCccccccEEEE
Confidence 11111110 1111112 467889999999999 999999999999999644 666666444 49999
Q ss_pred EEeeCCCCEEEEEEcCCcEEEEeCCCCcE-------EEE-----ecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCC
Q 005352 401 HFNPVDDNYFISGSIDGKVRIWAVLSCHV-------VDW-----VDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDN 468 (701)
Q Consensus 401 ~f~p~~~~~l~sgs~dg~v~iwd~~~~~~-------~~~-----~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~ 468 (701)
+|+| ++++|++|+.||+|+|||+.++.. +.. .+|...|.+++|+|+| +++++.|+.|++||+.++
T Consensus 136 afSP-DG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~ 212 (588)
T 2j04_A 136 EWNP-IESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSAS 212 (588)
T ss_dssp EECS-SSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSS
T ss_pred EEcC-CCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCC
Confidence 9999 999999999999999999998852 333 4466799999999999 888999999999999876
Q ss_pred eeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccce-eeecccCCCCeEEEEE--ecCCCEEE
Q 005352 469 HLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIG-KYKGLRRSGNQLSACF--TSDGKHIV 545 (701)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~-~~~~~~~~~~v~~l~~--s~dg~~l~ 545 (701)
..... .+.....|...|.+++|+ ++.+++++ ++.|++||...... .+. .+|...+..++| +|++..|+
T Consensus 213 ~~~~~----~~tL~~~h~~~V~svaFs---g~~LASa~-~~tIkLWd~~~~~~~~~~-~gh~~~V~~va~~~s~d~~~La 283 (588)
T 2j04_A 213 SHQPV----SRMIQNASRRKITDLKIV---DYKVVLTC-PGYVHKIDLKNYSISSLK-TGSLENFHIIPLNHEKESTILL 283 (588)
T ss_dssp SSCCC----EEEEECCCSSCCCCEEEE---TTEEEEEC-SSEEEEEETTTTEEEEEE-CSCCSCCCEEEETTCSSCEEEE
T ss_pred ccccc----eeeecccccCcEEEEEEE---CCEEEEEe-CCeEEEEECCCCeEEEEE-cCCCceEEEEEeeeCCCCCEEE
Confidence 63200 000112355789999998 47888887 69999999987666 444 359999999999 99999999
Q ss_pred EEeCCCcEEEEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCcc
Q 005352 546 SAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQE 625 (701)
Q Consensus 546 sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~ 625 (701)
++++||+ ++|.++. +.++|+ +..
T Consensus 284 ~a~edG~-klw~~d~----------------------------------------------------~~~spd----~~l 306 (588)
T 2j04_A 284 MSNKTSY-KVLLEDE----------------------------------------------------LHVTAD----NII 306 (588)
T ss_dssp ECSSCEE-EEEESSS----------------------------------------------------EEEECC----CSS
T ss_pred EEcCCCC-EEEeecc----------------------------------------------------EEECCC----ceE
Confidence 9999999 9999761 123554 222
Q ss_pred ccccCCCCcccCCCCccCCCCccccccccchhhhhhhhhcccccccccCCCccEEEEecC
Q 005352 626 YVFESFPKGCATWPEEKLPALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGW 685 (701)
Q Consensus 626 ~~~~s~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivTgg~ 685 (701)
.+ +.|+.+++|+....+ +..+.+. ..+++++++++ |+.||+|+.
T Consensus 307 ~a--~~d~~v~lW~~~g~~-l~~~~~~------------~~I~~va~SPd-G~~lA~~~~ 350 (588)
T 2j04_A 307 AP--YLEKKFKKWSTIWNE-FNNYETT------------LVIHGISLSPD-GYSIAIVYD 350 (588)
T ss_dssp HH--HHHHHHHHTTTTTTS-SSSSCCE------------EEEEEEEECTT-SSEEEEEEE
T ss_pred EE--EcCCEEEEEECCCCc-eeeeccc------------eEEEEEEECCC-CCEEEEEEe
Confidence 22 248999999864443 3333222 35788889999 999999874
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-28 Score=265.99 Aligned_cols=232 Identities=21% Similarity=0.312 Sum_probs=198.8
Q ss_pred ccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeee
Q 005352 247 QAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRR 326 (701)
Q Consensus 247 ~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (701)
.+|...|+++.| ++++|++|+.||.|++||+.+++
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~------------------------------------------- 164 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLE------------------------------------------- 164 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCC-------------------------------------------
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCe-------------------------------------------
Confidence 357778999887 78999999999999999987764
Q ss_pred cCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEee
Q 005352 327 TSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNP 404 (701)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p 404 (701)
.+..+.+|...|.+++| ++ +|++|+.||+|++||+.+++++..+. |...|.+++|++
T Consensus 165 -------------------~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~ 223 (435)
T 1p22_A 165 -------------------CKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN 223 (435)
T ss_dssp -------------------EEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCT
T ss_pred -------------------EEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC
Confidence 34556789999999999 45 99999999999999999999988886 889999999964
Q ss_pred CCCCEEEEEEcCCcEEEEeCCCCcEE----EEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeec
Q 005352 405 VDDNYFISGSIDGKVRIWAVLSCHVV----DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHS 480 (701)
Q Consensus 405 ~~~~~l~sgs~dg~v~iwd~~~~~~~----~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~ 480 (701)
++|++|+.||.|++||+.++... ....|...|.+++| +++++++|+.||.|++||+++++....
T Consensus 224 ---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~------- 291 (435)
T 1p22_A 224 ---GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRT------- 291 (435)
T ss_dssp ---TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEE-------
T ss_pred ---CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEE-------
Confidence 59999999999999999887643 34568889999998 788999999999999999998765432
Q ss_pred ccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 005352 481 KKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIG 560 (701)
Q Consensus 481 ~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~ 560 (701)
...+...|.++.+. +.++++++.|+.|++||+.+.........|...|.+++| ++.+|++|+.||.|++||+.+
T Consensus 292 -~~~~~~~v~~~~~~---~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~ 365 (435)
T 1p22_A 292 -LNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVA 365 (435)
T ss_dssp -EECCSSCEEEEEEE---TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHH
T ss_pred -EcCCCCcEEEEEeC---CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCC
Confidence 22455778999884 579999999999999999877666666668899999998 788999999999999999876
Q ss_pred CC
Q 005352 561 HE 562 (701)
Q Consensus 561 ~~ 562 (701)
+.
T Consensus 366 ~~ 367 (435)
T 1p22_A 366 AL 367 (435)
T ss_dssp HT
T ss_pred CC
Confidence 54
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-28 Score=266.77 Aligned_cols=258 Identities=19% Similarity=0.260 Sum_probs=209.0
Q ss_pred eeccCCCcEEEEEEccC-CCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEE
Q 005352 245 EIQAHDGSILTMKFSPD-GQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (701)
Q Consensus 245 ~l~~H~~~I~~l~fspd-g~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (701)
...+|.+.|++++|+|+ +.+||+++.||.|++|++.+.......
T Consensus 123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~----------------------------------- 167 (430)
T 2xyi_A 123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEP----------------------------------- 167 (430)
T ss_dssp EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCT-----------------------------------
T ss_pred EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCc-----------------------------------
Confidence 45679999999999997 789999999999999999764210000
Q ss_pred eeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC--eEEEEECCCcEEEEECCCCee-------eeee-cC
Q 005352 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHC-------LRVF-PH 393 (701)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~--~l~s~s~dg~I~iWd~~~~~~-------~~~~-~h 393 (701)
.....++..+.+|...|.+++|+|++ +|++++.||+|++||+.++.. ...+ .|
T Consensus 168 -----------------~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h 230 (430)
T 2xyi_A 168 -----------------SGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGH 230 (430)
T ss_dssp -----------------TCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCC
T ss_pred -----------------cccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCC
Confidence 00014567788999999999999987 899999999999999987432 2333 48
Q ss_pred CCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCC---cEE-EEecCCCcEEEEEEeeCCC-eEEEEecCCcEEEEECCCC
Q 005352 394 SNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSC---HVV-DWVDIRQIVTAVCYRPDGQ-GGIVGSMMGDCRFYNVSDN 468 (701)
Q Consensus 394 ~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~---~~~-~~~~~~~~i~~i~~sp~g~-~l~~gs~dg~v~i~d~~~~ 468 (701)
...|.+++|+|.++.+|++++.||.|++||++++ +.+ ....|...|++++|+|++. .+++|+.||.|++||++..
T Consensus 231 ~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~ 310 (430)
T 2xyi_A 231 TAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL 310 (430)
T ss_dssp SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCT
T ss_pred CCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCC
Confidence 8999999999977889999999999999999976 333 4557889999999999987 5889999999999999874
Q ss_pred eeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCc--------------cceeeecccCCCCeEE
Q 005352 469 HLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN--------------VIGKYKGLRRSGNQLS 534 (701)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~--------------~~~~~~~~~~~~~v~~ 534 (701)
..... ....|...|++++|+|++..+|++++.|+.|+|||+.. ....+....|...|.+
T Consensus 311 ~~~~~-------~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 383 (430)
T 2xyi_A 311 KLKLH-------SFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISD 383 (430)
T ss_dssp TSCSE-------EEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEE
T ss_pred CCCeE-------EeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceE
Confidence 32110 12235678999999996667899999999999999876 2334444558889999
Q ss_pred EEEecCCC-EEEEEeCCCcEEEEeCCCC
Q 005352 535 ACFTSDGK-HIVSAGEDSNVYMWNCIGH 561 (701)
Q Consensus 535 l~~s~dg~-~l~sgs~Dg~I~iWd~~~~ 561 (701)
++|+|++. +|++++.||.|+||++...
T Consensus 384 ~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 384 FSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp EEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred EEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 99999999 9999999999999998754
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.96 E-value=6.1e-29 Score=258.59 Aligned_cols=245 Identities=16% Similarity=0.248 Sum_probs=191.4
Q ss_pred cccCcceeee--cCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEcc--CCCEEEEEeCCCcEEE
Q 005352 201 DKQGEGERVR--LNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSP--DGQYLASAGDDGVVRL 276 (701)
Q Consensus 201 ~~~~~~~~~~--~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp--dg~~Lasgs~Dg~I~i 276 (701)
.|.+.+.++. +++..+++++.|+.|+||++...... ....+.+|.+.|++++|+| ++++||||+.|++|+|
T Consensus 11 ~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~-----~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~i 85 (316)
T 3bg1_A 11 SHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI-----LIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVII 85 (316)
T ss_dssp ---CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE-----EEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEE
T ss_pred cccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE-----EEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEE
Confidence 4566666554 55678899999999999998643211 1245789999999999986 4899999999999999
Q ss_pred EEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccC
Q 005352 277 WQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGE 356 (701)
Q Consensus 277 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 356 (701)
||+.+++. ..+..+.+|...
T Consensus 86 Wd~~~~~~------------------------------------------------------------~~~~~~~~h~~~ 105 (316)
T 3bg1_A 86 WREENGTW------------------------------------------------------------EKSHEHAGHDSS 105 (316)
T ss_dssp ECCSSSCC------------------------------------------------------------CEEEEECCCSSC
T ss_pred EECCCCcc------------------------------------------------------------eEEEEccCCCCc
Confidence 99876421 223456789999
Q ss_pred eEEEEEecC--C-eEEEEECCCcEEEEECCCCee---eeee-cCCCCeEEEEEeeCC-----------------CCEEEE
Q 005352 357 ILDLSWSKN--N-YLLSASIDKTVRLWRVGNDHC---LRVF-PHSNYVTCVHFNPVD-----------------DNYFIS 412 (701)
Q Consensus 357 I~~l~~s~~--~-~l~s~s~dg~I~iWd~~~~~~---~~~~-~h~~~V~~l~f~p~~-----------------~~~l~s 412 (701)
|.+++|+|+ + +|++++.|++|++||+..+.. ...+ .|...|.+++|+| + +.+|++
T Consensus 106 V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~s 184 (316)
T 3bg1_A 106 VNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAP-AVVPGSLIDHPSGQKPNYIKRFAS 184 (316)
T ss_dssp CCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECC-CCCC------CCSCCCCCCCBEEC
T ss_pred eEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEcc-ccCCccccccccccCccccceEEE
Confidence 999999997 5 899999999999999987632 2222 3888999999998 5 368999
Q ss_pred EEcCCcEEEEeCCCC---cEE-EEecCCCcEEEEEEeeCC----CeEEEEecCCcEEEEECCCCee-eeeeeEEeecccC
Q 005352 413 GSIDGKVRIWAVLSC---HVV-DWVDIRQIVTAVCYRPDG----QGGIVGSMMGDCRFYNVSDNHL-ELDAEICVHSKKK 483 (701)
Q Consensus 413 gs~dg~v~iwd~~~~---~~~-~~~~~~~~i~~i~~sp~g----~~l~~gs~dg~v~i~d~~~~~~-~~~~~~~~~~~~~ 483 (701)
|+.|+.|++||++.. +.+ .+..|...|.+++|+|++ +.|++++.||+|++|++.+... ..... .+ .
T Consensus 185 gs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~-~~----~ 259 (316)
T 3bg1_A 185 GGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPK-LL----H 259 (316)
T ss_dssp CBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCC-EE----E
T ss_pred ecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhh-hh----h
Confidence 999999999999754 233 455788999999999986 7899999999999999976311 00000 01 1
Q ss_pred CCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCC
Q 005352 484 APCKRITGFQFLPQDSSKVMVSCADSQVRILQGP 517 (701)
Q Consensus 484 ~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~ 517 (701)
.+...|.+++|+| ++.+|++++.|+.|+||+..
T Consensus 260 ~~~~~v~~v~~sp-~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 260 KFNDVVWHVSWSI-TANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp ECSSCEEEEEECT-TTCCEEEEESSSCEEEEEEC
T ss_pred cCCCcEEEEEEcC-CCCEEEEEcCCCeEEEEEEC
Confidence 2457899999999 78999999999999999964
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.96 E-value=9.7e-28 Score=258.27 Aligned_cols=243 Identities=17% Similarity=0.245 Sum_probs=197.0
Q ss_pred EEEEEEccCCCE-EEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCcc
Q 005352 253 ILTMKFSPDGQY-LASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESA 331 (701)
Q Consensus 253 I~~l~fspdg~~-Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (701)
...++++|+... +++++.||.|+||++.......
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~--------------------------------------------- 71 (402)
T 2aq5_A 37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVD--------------------------------------------- 71 (402)
T ss_dssp SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECC---------------------------------------------
T ss_pred CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCC---------------------------------------------
Confidence 446888887654 4467889999999986543210
Q ss_pred EEEcCCccccccCCCeEEEcCCccCeEEEEEec-CC-eEEEEECCCcEEEEECCCC-------eeeeeec-CCCCeEEEE
Q 005352 332 CVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK-NN-YLLSASIDKTVRLWRVGND-------HCLRVFP-HSNYVTCVH 401 (701)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~-~~-~l~s~s~dg~I~iWd~~~~-------~~~~~~~-h~~~V~~l~ 401 (701)
..+..+.+|...|++++|+| ++ +|++++.||+|++||+.++ +++..+. |...|++++
T Consensus 72 -------------~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 138 (402)
T 2aq5_A 72 -------------KNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138 (402)
T ss_dssp -------------TTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEE
T ss_pred -------------CCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEE
Confidence 23345678999999999999 77 9999999999999999987 4555555 999999999
Q ss_pred EeeCCC-CEEEEEEcCCcEEEEeCCCCcEEEEe---cCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEE
Q 005352 402 FNPVDD-NYFISGSIDGKVRIWAVLSCHVVDWV---DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEIC 477 (701)
Q Consensus 402 f~p~~~-~~l~sgs~dg~v~iwd~~~~~~~~~~---~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~ 477 (701)
|+| ++ ++|++++.||.|++||+.+++.+..+ .|...|++++|+|+++.|++++.||.|++||+++++.....
T Consensus 139 ~~p-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--- 214 (402)
T 2aq5_A 139 WHP-TAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEK--- 214 (402)
T ss_dssp ECS-SBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEE---
T ss_pred ECc-CCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeee---
Confidence 999 65 79999999999999999999887555 58899999999999999999999999999999987654321
Q ss_pred eecccCCCC-CCeeEEEEecCCCCEEEEE---ECCCcEEEEeCCcccee--eecccCCCCeEEEEEecCCCEEEE-EeCC
Q 005352 478 VHSKKKAPC-KRITGFQFLPQDSSKVMVS---CADSQVRILQGPNVIGK--YKGLRRSGNQLSACFTSDGKHIVS-AGED 550 (701)
Q Consensus 478 ~~~~~~~~~-~~i~~l~~~p~~~~~l~~~---s~dg~I~iwd~~~~~~~--~~~~~~~~~v~~l~~s~dg~~l~s-gs~D 550 (701)
...+. ..+..+.|+| ++.+|+++ +.|+.|++||+.+.... .....+...+.+++|+|++++|++ |+.|
T Consensus 215 ----~~~~~~~~~~~~~~~~-~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~d 289 (402)
T 2aq5_A 215 ----DRPHEGTRPVHAVFVS-EGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGD 289 (402)
T ss_dssp ----ECSSCSSSCCEEEECS-TTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTC
T ss_pred ----ccCCCCCcceEEEEcC-CCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCC
Confidence 02222 3488999999 68888888 68999999999865432 222346778999999999999975 5579
Q ss_pred CcEEEEeCCCCC
Q 005352 551 SNVYMWNCIGHE 562 (701)
Q Consensus 551 g~I~iWd~~~~~ 562 (701)
|.|++|++.+++
T Consensus 290 g~i~i~d~~~~~ 301 (402)
T 2aq5_A 290 SSIRYFEITSEA 301 (402)
T ss_dssp SCEEEEEECSST
T ss_pred CeEEEEEecCCC
Confidence 999999998776
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.4e-27 Score=257.20 Aligned_cols=249 Identities=13% Similarity=0.051 Sum_probs=194.2
Q ss_pred ccCCCcEEEEEEccCCCEE-EEEeCCCcEEEEEee--cCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEE
Q 005352 247 QAHDGSILTMKFSPDGQYL-ASAGDDGVVRLWQVV--EDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (701)
Q Consensus 247 ~~H~~~I~~l~fspdg~~L-asgs~Dg~I~iWd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (701)
.+|.+.|++++|+|+|++| ++|+.||.|+|||+. +++.+
T Consensus 99 ~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~-------------------------------------- 140 (450)
T 2vdu_B 99 PPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVL-------------------------------------- 140 (450)
T ss_dssp -CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCE--------------------------------------
T ss_pred CccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCcee--------------------------------------
Confidence 4677789999999999996 899999999999997 54322
Q ss_pred eeecCCccEEEcCCccccccCCCeEEE--cCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeee----ee-cCCC
Q 005352 324 LRRTSESACVVFPPKVFRILEKPLHEF--HGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLR----VF-PHSN 395 (701)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~----~~-~h~~ 395 (701)
..+ ..|...|.+++|+|++ +|++++.++.|++|++.+++... .+ .|..
T Consensus 141 ------------------------~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~ 196 (450)
T 2vdu_B 141 ------------------------KLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVS 196 (450)
T ss_dssp ------------------------EEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSS
T ss_pred ------------------------eeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccC
Confidence 222 2567889999999999 99999999999999998887653 33 3899
Q ss_pred CeEEEEEeeCC---CCEEEEEEcCCcEEEEeCCCCcEEEE--ecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCee
Q 005352 396 YVTCVHFNPVD---DNYFISGSIDGKVRIWAVLSCHVVDW--VDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHL 470 (701)
Q Consensus 396 ~V~~l~f~p~~---~~~l~sgs~dg~v~iwd~~~~~~~~~--~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~ 470 (701)
.|++++|+| + +++|++++.|+.|++||+.+++.+.. ..|...|++++|+ ++++|++++.|+.|++||+.+++.
T Consensus 197 ~v~~~~~sp-~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~ 274 (450)
T 2vdu_B 197 MLTDVHLIK-DSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKN 274 (450)
T ss_dssp CEEEEEEEE-CTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCE
T ss_pred ceEEEEEcC-CCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcE
Confidence 999999999 8 88999999999999999998887643 3688999999999 999999999999999999998876
Q ss_pred eeeeeEEee-----------------cccCCCCCCeeEEEEecCCCCEEEEEE-CCCcEEEEeC--Ccc---ceeeeccc
Q 005352 471 ELDAEICVH-----------------SKKKAPCKRITGFQFLPQDSSKVMVSC-ADSQVRILQG--PNV---IGKYKGLR 527 (701)
Q Consensus 471 ~~~~~~~~~-----------------~~~~~~~~~i~~l~~~p~~~~~l~~~s-~dg~I~iwd~--~~~---~~~~~~~~ 527 (701)
......... .........|.+++|+| ++.++++++ .++.|++|++ ... ........
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~ 353 (450)
T 2vdu_B 275 LSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSK-NLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITF 353 (450)
T ss_dssp EEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECS-SSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEEC
T ss_pred eeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeC-CCCEEEEEECCCCeEEEEEeccCCCCceeeccEecc
Confidence 543321100 00012345789999999 788888888 8999999999 322 22222223
Q ss_pred CCCCeEEEEEecCCCEEEEEeC------CCcEEEEeCCCC
Q 005352 528 RSGNQLSACFTSDGKHIVSAGE------DSNVYMWNCIGH 561 (701)
Q Consensus 528 ~~~~v~~l~~s~dg~~l~sgs~------Dg~I~iWd~~~~ 561 (701)
+ ..|.+++|+|++.++++++. +..|.+|.++..
T Consensus 354 ~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~ 392 (450)
T 2vdu_B 354 P-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLN 392 (450)
T ss_dssp S-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEETT
T ss_pred C-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEcC
Confidence 4 88999999996544444443 556899987644
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.2e-28 Score=261.24 Aligned_cols=253 Identities=19% Similarity=0.221 Sum_probs=176.3
Q ss_pred CCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecC
Q 005352 249 HDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTS 328 (701)
Q Consensus 249 H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (701)
|.+.+....+++++.+||+|+.|++|+|||+.+++....
T Consensus 88 ~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~----------------------------------------- 126 (393)
T 4gq1_A 88 HDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQ----------------------------------------- 126 (393)
T ss_dssp ---------CCEEEEEEEEEETTSCEEEEEEETTEEEEE-----------------------------------------
T ss_pred cCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCcccee-----------------------------------------
Confidence 334444444555677899999999999999988753221
Q ss_pred CccEEEcCCccccccCCCeEEEcCCccCeEEEEEec--------CC-eEEEEECCCcEEEEECCCCeeee-eecCCCCeE
Q 005352 329 ESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK--------NN-YLLSASIDKTVRLWRVGNDHCLR-VFPHSNYVT 398 (701)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~--------~~-~l~s~s~dg~I~iWd~~~~~~~~-~~~h~~~V~ 398 (701)
.++..+.||.+.|.+++|+| ++ +|++++.|++|+|||+.++.++. .+.|...|.
T Consensus 127 ----------------~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~ 190 (393)
T 4gq1_A 127 ----------------HVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGI 190 (393)
T ss_dssp ----------------EEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEE
T ss_pred ----------------eeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcE
Confidence 12234578999999999998 56 99999999999999998776554 456999999
Q ss_pred EEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEE--------------------------EecCCCcEEEEEEe-eCCCeE
Q 005352 399 CVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD--------------------------WVDIRQIVTAVCYR-PDGQGG 451 (701)
Q Consensus 399 ~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~--------------------------~~~~~~~i~~i~~s-p~g~~l 451 (701)
+++|+|.+.++|++++.|++|++||+++++... ...+...+.++.|. |+++.|
T Consensus 191 ~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l 270 (393)
T 4gq1_A 191 SVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGI 270 (393)
T ss_dssp EEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEE
T ss_pred EEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEE
Confidence 999999444689999999999999998865331 12355678888887 799999
Q ss_pred EEEecCCcEEEEECCCCeeeeeeeEEe---e-------cccCCCCCCeeEEEEecC-CCCEEEEEECCCcEEEEeCCccc
Q 005352 452 IVGSMMGDCRFYNVSDNHLELDAEICV---H-------SKKKAPCKRITGFQFLPQ-DSSKVMVSCADSQVRILQGPNVI 520 (701)
Q Consensus 452 ~~gs~dg~v~i~d~~~~~~~~~~~~~~---~-------~~~~~~~~~i~~l~~~p~-~~~~l~~~s~dg~I~iwd~~~~~ 520 (701)
++++.|+.+++||+...+......... . ..............+.|. ++.++++|+.|+.|++||..+..
T Consensus 271 ~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~ 350 (393)
T 4gq1_A 271 LAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKD 350 (393)
T ss_dssp EEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTT
T ss_pred EEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCc
Confidence 999999999999998765432211000 0 000011112223344443 34456677789999999998776
Q ss_pred eeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 005352 521 GKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCI 559 (701)
Q Consensus 521 ~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~ 559 (701)
.......|..+|.+++|+|||++||+++.+| +.+|.+.
T Consensus 351 ~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 351 SNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp CCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred EEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 6666666888999999999999999999766 6666653
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.7e-27 Score=249.33 Aligned_cols=310 Identities=8% Similarity=0.072 Sum_probs=211.6
Q ss_pred eeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEe
Q 005352 245 EIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSL 324 (701)
Q Consensus 245 ~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (701)
.+.+|.+.|++++|+|||++||+|+.|+ ++||++.+.+....
T Consensus 14 ~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~------------------------------------- 55 (355)
T 3vu4_A 14 PENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMS------------------------------------- 55 (355)
T ss_dssp -----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEE-------------------------------------
T ss_pred ccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeee-------------------------------------
Confidence 4577999999999999999999998875 78999876542211
Q ss_pred eecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC--eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEE
Q 005352 325 RRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHF 402 (701)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~--~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f 402 (701)
.+...+..+++.+++ .+++++.|++|++||+.+++++..+.+...|.+++|
T Consensus 56 ---------------------------~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~ 108 (355)
T 3vu4_A 56 ---------------------------QEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIKVDAPVKDLFL 108 (355)
T ss_dssp ---------------------------EECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEECSSCEEEEEE
T ss_pred ---------------------------eecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEECCCceEEEEE
Confidence 111236667777776 446788889999999999999999999999999999
Q ss_pred eeCCCCEEEEEEcCCcEEEEeCCCC-cEEEEecCCCcEEEEEEeeCCCeEEE--EecCCcEEEEECCCCeeeeeee----
Q 005352 403 NPVDDNYFISGSIDGKVRIWAVLSC-HVVDWVDIRQIVTAVCYRPDGQGGIV--GSMMGDCRFYNVSDNHLELDAE---- 475 (701)
Q Consensus 403 ~p~~~~~l~sgs~dg~v~iwd~~~~-~~~~~~~~~~~i~~i~~sp~g~~l~~--gs~dg~v~i~d~~~~~~~~~~~---- 475 (701)
++ + .++++ .++.|++||+.+. +.+..... +...+++++ ..+++ |+.+|.|++||+.++.......
T Consensus 109 ~~-~--~~~~~-~~~~i~i~d~~~~~~~~~~~~~--~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~ 180 (355)
T 3vu4_A 109 SR-E--FIVVS-YGDVISVFKFGNPWKRITDDIR--FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQ 180 (355)
T ss_dssp CS-S--EEEEE-ETTEEEEEESSTTCCBSSCCEE--EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------
T ss_pred cC-C--EEEEE-EcCEEEEEECCCCceeeEEecc--CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCcccccccccc
Confidence 87 3 45544 4889999999987 55433333 455566777 56666 5889999999998754110000
Q ss_pred ---EEe-ecccCCCCCCeeEEEEecCCCCEEEEEECCCc-EEEEeCCccceeeecc-c-CCCCeEEEEEecCCCEEEEEe
Q 005352 476 ---ICV-HSKKKAPCKRITGFQFLPQDSSKVMVSCADSQ-VRILQGPNVIGKYKGL-R-RSGNQLSACFTSDGKHIVSAG 548 (701)
Q Consensus 476 ---~~~-~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~-I~iwd~~~~~~~~~~~-~-~~~~v~~l~~s~dg~~l~sgs 548 (701)
+.. ......|...|++++|+| ++.+|++++.|++ |++||+.+........ . |...|.+++|+|+|++|++++
T Consensus 181 ~~~~~p~~~~~~~h~~~v~~~~~s~-~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s 259 (355)
T 3vu4_A 181 QKAILGKGVLIKAHTNPIKMVRLNR-KSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVS 259 (355)
T ss_dssp ------CCEEECCCSSCEEEEEECT-TSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEE
T ss_pred ccccCcccEEEEccCCceEEEEECC-CCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEE
Confidence 000 122456778999999999 7899999999998 9999998766665554 3 889999999999999999999
Q ss_pred CCCcEEEEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccc
Q 005352 549 EDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVF 628 (701)
Q Consensus 549 ~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~ 628 (701)
.|+.|+|||+..+........... ....+. .-.|.-. ..............++|+|+ +..+++
T Consensus 260 ~d~~v~iw~~~~~~~~~~~~~~~~-~~~~~~-----~~~~~~~-------~~~~~~~~~~~~~~~a~~~d----~~~l~~ 322 (355)
T 3vu4_A 260 DKWTLHVFEIFNDQDNKRHALKGW-INMKYF-----QSEWSLC-------NFKLSVDKHVRGCKIAWISE----SSLVVV 322 (355)
T ss_dssp TTCEEEEEESSCCSCCCSEETTTT-EECCCC-----CCSSCSE-------EEECCCCTTCCCCEEEESSS----SEEEEE
T ss_pred CCCEEEEEEccCCCCcccccccce-eecccc-----cccccee-------EEEeccCCCCCceEEEEeCC----CCEEEE
Confidence 999999999987642211110000 000000 0001100 00000011222356788987 677888
Q ss_pred cCCCCcccCCCCccCCC
Q 005352 629 ESFPKGCATWPEEKLPA 645 (701)
Q Consensus 629 ~s~d~~~~~W~~~~~~~ 645 (701)
++.|+.+.+|+......
T Consensus 323 ~~~dg~~~~~~~~~~~~ 339 (355)
T 3vu4_A 323 WPHTRMIETFKVVFDDE 339 (355)
T ss_dssp ETTTTEEEEEEEEEETT
T ss_pred EeCCCeEEEEEEEcCCC
Confidence 88999999988665443
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-27 Score=254.05 Aligned_cols=255 Identities=18% Similarity=0.190 Sum_probs=203.0
Q ss_pred CCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECC--CCeeeeeec-CCCCeEEEEEeeCC--CCEEEEEEcCCc
Q 005352 345 KPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVG--NDHCLRVFP-HSNYVTCVHFNPVD--DNYFISGSIDGK 418 (701)
Q Consensus 345 ~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~--~~~~~~~~~-h~~~V~~l~f~p~~--~~~l~sgs~dg~ 418 (701)
+++..+.+|...|++++|+|++ +|++++.||.|++||+. +.+.+..+. |...|++++|+| + +++|++++.||.
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~l~s~~~dg~ 80 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH-PKFGTILASCSYDGK 80 (379)
T ss_dssp ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECC-GGGCSEEEEEETTSC
T ss_pred CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCC-CCCCCEEEEeccCCE
Confidence 3456778999999999999999 99999999999999998 556666665 899999999987 5 899999999999
Q ss_pred EEEEeCCCCc--EE-EEecCCCcEEEEEEeeC--CCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEE
Q 005352 419 VRIWAVLSCH--VV-DWVDIRQIVTAVCYRPD--GQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQ 493 (701)
Q Consensus 419 v~iwd~~~~~--~~-~~~~~~~~i~~i~~sp~--g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 493 (701)
|++||+.+++ .+ ....|...|.+++|+|+ +..|++++.||.|++||+.......... ...+...|.+++
T Consensus 81 v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~------~~~~~~~v~~~~ 154 (379)
T 3jrp_A 81 VLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII------IDAHAIGVNSAS 154 (379)
T ss_dssp EEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEE------EECCTTCEEEEE
T ss_pred EEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEE------ecCCCCceEEEE
Confidence 9999999985 33 45568899999999999 9999999999999999998874332211 234567899999
Q ss_pred EecC------------CCCEEEEEECCCcEEEEeCCccce----eeecccCCCCeEEEEEecC---CCEEEEEeCCCcEE
Q 005352 494 FLPQ------------DSSKVMVSCADSQVRILQGPNVIG----KYKGLRRSGNQLSACFTSD---GKHIVSAGEDSNVY 554 (701)
Q Consensus 494 ~~p~------------~~~~l~~~s~dg~I~iwd~~~~~~----~~~~~~~~~~v~~l~~s~d---g~~l~sgs~Dg~I~ 554 (701)
|+|. ++.++++++.|+.|++||+..... ......|...|.+++|+|+ +++|++++.||.|+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~ 234 (379)
T 3jrp_A 155 WAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCI 234 (379)
T ss_dssp ECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEE
T ss_pred EcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEE
Confidence 9995 589999999999999999864332 2233458899999999999 89999999999999
Q ss_pred EEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCCc
Q 005352 555 MWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKG 634 (701)
Q Consensus 555 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~ 634 (701)
+||+.++..+.... . .........+..++|+|+ +..+++++.|+.
T Consensus 235 iwd~~~~~~~~~~~------~-------------------------~~~~~~~~~v~~~~~s~~----g~~l~~~~~dg~ 279 (379)
T 3jrp_A 235 IWTQDNEQGPWKKT------L-------------------------LKEEKFPDVLWRASWSLS----GNVLALSGGDNK 279 (379)
T ss_dssp EEEESSTTSCCEEE------E-------------------------SSSSCCSSCEEEEEECSS----SCCEEEEESSSS
T ss_pred EEeCCCCCccceee------e-------------------------eccccCCCcEEEEEEcCC----CCEEEEecCCCc
Confidence 99998865211000 0 000012334566788887 677888889999
Q ss_pred ccCCCCc
Q 005352 635 CATWPEE 641 (701)
Q Consensus 635 ~~~W~~~ 641 (701)
+++|+..
T Consensus 280 i~iw~~~ 286 (379)
T 3jrp_A 280 VTLWKEN 286 (379)
T ss_dssp EEEEEEE
T ss_pred EEEEeCC
Confidence 9999976
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=9.5e-28 Score=252.57 Aligned_cols=274 Identities=12% Similarity=0.080 Sum_probs=206.2
Q ss_pred ecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeec
Q 005352 210 RLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVD 289 (701)
Q Consensus 210 ~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~ 289 (701)
..++..+++|+.|+.|++|+....... ..+. .+.|.++.|+|+ +++|+.|++|++|+......+..+.
T Consensus 45 ~~d~~~l~sg~~Dg~v~iwd~~~~~~~-------~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~ 112 (343)
T 3lrv_A 45 YYDKWVCMCRCEDGALHFTQLKDSKTI-------TTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSK 112 (343)
T ss_dssp SEEEEEEEEEEETTEEEEEEESSSSCE-------EEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETT
T ss_pred cCCCCEEEEECCCCcEEEEECCCCcEE-------EEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecC
Confidence 345667888999999999998654221 1121 456788889888 9999999999999976532111110
Q ss_pred CCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEE-cCCccCeEEEEEec--CC
Q 005352 290 IPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEF-HGHSGEILDLSWSK--NN 366 (701)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~I~~l~~s~--~~ 366 (701)
. .+.+..+ .+|...|.+++|+| ++
T Consensus 113 --~---------------------------------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~ 139 (343)
T 3lrv_A 113 --T---------------------------------------------------NKVLREIEVDSANEIIYMYGHNEVNT 139 (343)
T ss_dssp --T---------------------------------------------------CCEEEEEECCCSSCEEEEECCC---C
T ss_pred --C---------------------------------------------------cceeEEeecCCCCCEEEEEcCCCCCC
Confidence 0 0112222 36778999999999 88
Q ss_pred -eEEEEECCCcEEEEECCCCeeeeeec--CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEE--EEec-CCCcEE
Q 005352 367 -YLLSASIDKTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV--DWVD-IRQIVT 440 (701)
Q Consensus 367 -~l~s~s~dg~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~--~~~~-~~~~i~ 440 (701)
+|++++.||+|++||+++++++..+. +...|++++|+| ++.+|++|+.||.|++||+++++.+ .+.. |...|+
T Consensus 140 ~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~p-dg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~ 218 (343)
T 3lrv_A 140 EYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHK-DSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIK 218 (343)
T ss_dssp CEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECT-TSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEE
T ss_pred CEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEE
Confidence 99999999999999999999877663 566899999999 9999999999999999999998865 4455 789999
Q ss_pred EEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCe--eEEEEecCCCCEEEEEEC-CCcEEEEeCC
Q 005352 441 AVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRI--TGFQFLPQDSSKVMVSCA-DSQVRILQGP 517 (701)
Q Consensus 441 ~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i--~~l~~~p~~~~~l~~~s~-dg~I~iwd~~ 517 (701)
+++|+|++.+|++++ ++.|++||+++......... ...+...+ .+++|+| ++.+|++++. |+.|++|+..
T Consensus 219 ~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-~g~~l~~~s~~d~~i~v~~~~ 291 (343)
T 3lrv_A 219 EVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPT-----YTIPEFKTGTVTYDIDD-SGKNMIAYSNESNSLTIYKFD 291 (343)
T ss_dssp EEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCC-----CBC-----CCEEEEECT-TSSEEEEEETTTTEEEEEEEC
T ss_pred EEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecc-----cccccccccceEEEECC-CCCEEEEecCCCCcEEEEEEc
Confidence 999999999999999 55999999998754321110 00111222 4699999 7899999998 9999999986
Q ss_pred ccceeeecccCCCCeEEEEEec---CCCEEEEEeCCCcEEEEeCCC
Q 005352 518 NVIGKYKGLRRSGNQLSACFTS---DGKHIVSAGEDSNVYMWNCIG 560 (701)
Q Consensus 518 ~~~~~~~~~~~~~~v~~l~~s~---dg~~l~sgs~Dg~I~iWd~~~ 560 (701)
.....+.. .++..++|.+ +...|++++.||.+.++-...
T Consensus 292 ~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~ 333 (343)
T 3lrv_A 292 KKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAILKTN 333 (343)
T ss_dssp TTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEEEECS
T ss_pred ccccceEe----cCceeEecCccccccceeEEEecCCceEEEEecC
Confidence 55444433 5677888988 889999999999999886443
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.9e-26 Score=247.92 Aligned_cols=277 Identities=10% Similarity=0.068 Sum_probs=220.5
Q ss_pred eeecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeee
Q 005352 208 RVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTE 287 (701)
Q Consensus 208 ~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~ 287 (701)
++++++..+++++.++.|++|+....... .......+.+|.+.|.+++|+|+++++++++.|+.|++||+.+++.
T Consensus 129 ~~s~~~~~~~~~~~~~~i~~~d~~~g~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~--- 203 (433)
T 3bws_A 129 RFIDNTRLAIPLLEDEGMDVLDINSGQTV--RLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAY--- 203 (433)
T ss_dssp EESSSSEEEEEBTTSSSEEEEETTTCCEE--EECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCE---
T ss_pred EEeCCCeEEEEeCCCCeEEEEECCCCeEe--eecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceE---
Confidence 34443344555777889999997654321 2222224668999999999999999999999999999999977542
Q ss_pred ecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-
Q 005352 288 VDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN- 366 (701)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~- 366 (701)
+..+..|...+.+++|+|++
T Consensus 204 -----------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~ 224 (433)
T 3bws_A 204 -----------------------------------------------------------KATVDLTGKWSKILLYDPIRD 224 (433)
T ss_dssp -----------------------------------------------------------EEEEECSSSSEEEEEEETTTT
T ss_pred -----------------------------------------------------------EEEEcCCCCCeeEEEEcCCCC
Confidence 33445688899999999998
Q ss_pred eE-EEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEE--------cCCcEEEEeCCCCcEEEEecCCC
Q 005352 367 YL-LSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGS--------IDGKVRIWAVLSCHVVDWVDIRQ 437 (701)
Q Consensus 367 ~l-~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs--------~dg~v~iwd~~~~~~~~~~~~~~ 437 (701)
++ ++++.|+.|++||+.+++.+..+.+...+.+++|+| ++++|++++ .|+.|++||+.+++.+....+..
T Consensus 225 ~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~-~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~ 303 (433)
T 3bws_A 225 LVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSK-DGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPG 303 (433)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECT-TSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEE
T ss_pred EEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcC-CCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCC
Confidence 66 455589999999999999999888778899999999 898998888 48899999999998888777777
Q ss_pred cEEEEEEeeCCCeE-EEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEEC---------
Q 005352 438 IVTAVCYRPDGQGG-IVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCA--------- 507 (701)
Q Consensus 438 ~i~~i~~sp~g~~l-~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~--------- 507 (701)
.+..++|+|+++.+ ++++.++.|++||+.+++..... .+...+.+++|+| ++.++++++.
T Consensus 304 ~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~---------~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~ 373 (433)
T 3bws_A 304 NKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSI---------PVFDKPNTIALSP-DGKYLYVSCRGPNHPTEGY 373 (433)
T ss_dssp CEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEE---------ECSSSEEEEEECT-TSSEEEEEECCCCCTTTCT
T ss_pred CcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEe---------cCCCCCCeEEEcC-CCCEEEEEecCCCcccccc
Confidence 89999999999765 55688999999999987654321 1235688999999 6777777776
Q ss_pred ------CCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeC-CCcEEEEeCCC
Q 005352 508 ------DSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGE-DSNVYMWNCIG 560 (701)
Q Consensus 508 ------dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~-Dg~I~iWd~~~ 560 (701)
||.|++||..+........ ....+.+++|+|+|++|++++. |+.|++|++++
T Consensus 374 ~~~g~~dg~v~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 374 LKKGLVLGKVYVIDTTTDTVKEFWE-AGNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp TSCCSSCCEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred ccccccceEEEEEECCCCcEEEEec-CCCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 5699999997655443332 3567899999999999998875 99999999864
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-25 Score=239.83 Aligned_cols=264 Identities=12% Similarity=0.130 Sum_probs=210.5
Q ss_pred cccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEE-EEEeCCCcEEEEEeecCeeeeeecCCCCC
Q 005352 216 AMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYL-ASAGDDGVVRLWQVVEDERLTEVDIPEID 294 (701)
Q Consensus 216 ~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~L-asgs~Dg~I~iWd~~~~~~~~~~~~~~~~ 294 (701)
+++++.++.|++|+...... .+.+.+|. .+.+++|+|+|++| ++++.|+.|++||+.+++.+.
T Consensus 5 ~vs~~~d~~v~v~d~~~~~~-------~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~-------- 68 (391)
T 1l0q_A 5 YIANSESDNISVIDVTSNKV-------TATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIA-------- 68 (391)
T ss_dssp EEEETTTTEEEEEETTTTEE-------EEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEE--------
T ss_pred EEEcCCCCEEEEEECCCCeE-------EEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEE--------
Confidence 45688899999999764321 12355564 48999999999987 677799999999998876432
Q ss_pred CceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEE-EEE
Q 005352 295 PSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLL-SAS 372 (701)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~-s~s 372 (701)
.+..| ..+.+++|+|++ +|+ +++
T Consensus 69 ------------------------------------------------------~~~~~-~~v~~~~~spdg~~l~~~~~ 93 (391)
T 1l0q_A 69 ------------------------------------------------------TVPAG-SSPQGVAVSPDGKQVYVTNM 93 (391)
T ss_dssp ------------------------------------------------------EEECS-SSEEEEEECTTSSEEEEEET
T ss_pred ------------------------------------------------------EEECC-CCccceEECCCCCEEEEEEC
Confidence 22223 389999999999 664 555
Q ss_pred CCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEE-EEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeE
Q 005352 373 IDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYF-ISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGG 451 (701)
Q Consensus 373 ~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l-~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l 451 (701)
.++.|++||+.+++.+..+.+...+.+++|+| ++++| ++++.++.|++||+.+++.+........+..++|+|+++.+
T Consensus 94 ~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l 172 (391)
T 1l0q_A 94 ASSTLSVIDTTSNTVAGTVKTGKSPLGLALSP-DGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKV 172 (391)
T ss_dssp TTTEEEEEETTTTEEEEEEECSSSEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEE
T ss_pred CCCEEEEEECCCCeEEEEEeCCCCcceEEECC-CCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcceEEECCCCCEE
Confidence 67999999999999999988888899999999 88876 67888999999999999988877777888999999999988
Q ss_pred -EEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEE---CCCcEEEEeCCccceeeeccc
Q 005352 452 -IVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSC---ADSQVRILQGPNVIGKYKGLR 527 (701)
Q Consensus 452 -~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s---~dg~I~iwd~~~~~~~~~~~~ 527 (701)
++++.++.|++||+++++...... +...+.+++|+| ++.++++++ .++.|++||+.+........
T Consensus 173 ~~~~~~~~~v~~~d~~~~~~~~~~~---------~~~~~~~~~~~~-~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~- 241 (391)
T 1l0q_A 173 YVANFDSMSISVIDTVTNSVIDTVK---------VEAAPSGIAVNP-EGTKAYVTNVDKYFNTVSMIDTGTNKITARIP- 241 (391)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEE---------CSSEEEEEEECT-TSSEEEEEEECSSCCEEEEEETTTTEEEEEEE-
T ss_pred EEEeCCCCEEEEEECCCCeEEEEEe---------cCCCccceEECC-CCCEEEEEecCcCCCcEEEEECCCCeEEEEEe-
Confidence 567788999999999876543211 235688999999 677777777 79999999998655443333
Q ss_pred CCCCeEEEEEecCCCEE-EEEeCCCcEEEEeCCCCC
Q 005352 528 RSGNQLSACFTSDGKHI-VSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 528 ~~~~v~~l~~s~dg~~l-~sgs~Dg~I~iWd~~~~~ 562 (701)
....+.+++|+|++++| ++++.|+.|++||+.+++
T Consensus 242 ~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~ 277 (391)
T 1l0q_A 242 VGPDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNT 277 (391)
T ss_dssp CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred cCCCccEEEEccCCCEEEEEcCCCCEEEEEECCCCc
Confidence 33468899999999988 677889999999998875
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.3e-26 Score=248.43 Aligned_cols=328 Identities=9% Similarity=0.026 Sum_probs=239.4
Q ss_pred cccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCce
Q 005352 218 FCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSC 297 (701)
Q Consensus 218 ~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~ 297 (701)
.++.++.++||.++.....+. ....+..|. .+.+++|+|++.++++++.|+.|++||+.+++......
T Consensus 94 ~~~~~~~~~l~~~d~~~~~~~---~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~-------- 161 (433)
T 3bws_A 94 RKPEELNEKLIALDKEGITHR---FISRFKTGF-QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSP-------- 161 (433)
T ss_dssp SSGGGGTTCEEECCBTTCSEE---EEEEEECSS-CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECC--------
T ss_pred cccCCCceEEEEECCCCCcce---EEEEEcCCC-CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecC--------
Confidence 456677677777654322111 112344443 45699999988888889899999999998876432111
Q ss_pred eEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCc
Q 005352 298 IYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKT 376 (701)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~ 376 (701)
...+.+|...|.+++|++++ ++++++.|+.
T Consensus 162 -------------------------------------------------~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~ 192 (433)
T 3bws_A 162 -------------------------------------------------PEKYKKKLGFVETISIPEHNELWVSQMQANA 192 (433)
T ss_dssp -------------------------------------------------CHHHHTTCCEEEEEEEGGGTEEEEEEGGGTE
T ss_pred -------------------------------------------------cccccccCCceeEEEEcCCCEEEEEECCCCE
Confidence 11235788999999999999 8899999999
Q ss_pred EEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEE-EEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEE
Q 005352 377 VRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFI-SGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVG 454 (701)
Q Consensus 377 I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~-sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g 454 (701)
|++||+.+++.+..+. |...+.+++|+| ++++++ +++.++.|++||+++++.+........+.+++|+|+++.++++
T Consensus 193 v~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~ 271 (433)
T 3bws_A 193 VHVFDLKTLAYKATVDLTGKWSKILLYDP-IRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIA 271 (433)
T ss_dssp EEEEETTTCCEEEEEECSSSSEEEEEEET-TTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEE
T ss_pred EEEEECCCceEEEEEcCCCCCeeEEEEcC-CCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEE
Confidence 9999999999888876 788999999999 888775 4447999999999999988877777889999999999999998
Q ss_pred e--------cCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecc
Q 005352 455 S--------MMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGL 526 (701)
Q Consensus 455 s--------~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~ 526 (701)
+ .||.|++||+.+++...... +...+.+++|+|++..++++++.++.|++||..+.......
T Consensus 272 ~~~~~~~~~~dg~i~~~d~~~~~~~~~~~---------~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~- 341 (433)
T 3bws_A 272 QFSASNQESGGGRLGIYSMDKEKLIDTIG---------PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSI- 341 (433)
T ss_dssp EEESCTTCSCCEEEEEEETTTTEEEEEEE---------EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEE-
T ss_pred ECCCCccccCCCeEEEEECCCCcEEeecc---------CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEe-
Confidence 8 48899999999886543221 11357889999954456677788999999999865443332
Q ss_pred cCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCC
Q 005352 527 RRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSD 606 (701)
Q Consensus 527 ~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 606 (701)
.+...+.+++|+|+|++|++++.+..-.
T Consensus 342 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~---------------------------------------------------- 369 (433)
T 3bws_A 342 PVFDKPNTIALSPDGKYLYVSCRGPNHP---------------------------------------------------- 369 (433)
T ss_dssp ECSSSEEEEEECTTSSEEEEEECCCCCT----------------------------------------------------
T ss_pred cCCCCCCeEEEcCCCCEEEEEecCCCcc----------------------------------------------------
Confidence 3667899999999999999887632000
Q ss_pred CCCCCccccCCCccccCccccccCCCCcccCCCCccCCCCccccccccchhhhhhhhhcccccccccCCCccEEEEecC-
Q 005352 607 DDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGW- 685 (701)
Q Consensus 607 ~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivTgg~- 685 (701)
....+++++.|+.+.+|+.+....+..+..+ ..+.+++++++ |.+|++++.
T Consensus 370 ---------------~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~------------~~~~~~~~s~d-g~~l~~~~~~ 421 (433)
T 3bws_A 370 ---------------TEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG------------NQPTGLDVSPD-NRYLVISDFL 421 (433)
T ss_dssp ---------------TTCTTSCCSSCCEEEEEETTTTEEEEEEECS------------SSEEEEEECTT-SCEEEEEETT
T ss_pred ---------------ccccccccccceEEEEEECCCCcEEEEecCC------------CCCceEEEcCC-CCEEEEEECC
Confidence 0112233455666666666555444333222 23556778888 888887764
Q ss_pred CCeEeEEeecCC
Q 005352 686 DGRIRSFLNYGL 697 (701)
Q Consensus 686 DG~Irvw~~~g~ 697 (701)
||.|++|+.-++
T Consensus 422 d~~i~v~~~~~~ 433 (433)
T 3bws_A 422 DHQIRVYRRDGF 433 (433)
T ss_dssp TTEEEEEEETTC
T ss_pred CCeEEEEEecCC
Confidence 999999987653
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.8e-26 Score=247.27 Aligned_cols=290 Identities=10% Similarity=-0.049 Sum_probs=200.5
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCe---eeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeee
Q 005352 250 DGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDE---RLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRR 326 (701)
Q Consensus 250 ~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (701)
..+|.+++|+|+|++|+++ .++.|++||+.+++ .+..+..+........+....... ..+...............
T Consensus 4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 81 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQ-GQSSENENENKKLKSNKG 81 (450)
T ss_dssp ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhc-cccccccccccccccCcC
Confidence 3578899999999976666 57899999999998 555554322100000000000000 000000000000000000
Q ss_pred cCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eE-EEEECCCcEEEEECC--CCeeeeee---cCCCCeEE
Q 005352 327 TSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YL-LSASIDKTVRLWRVG--NDHCLRVF---PHSNYVTC 399 (701)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l-~s~s~dg~I~iWd~~--~~~~~~~~---~h~~~V~~ 399 (701)
. . ...+... ...+.....+|.+.|.+++|+|++ +| ++++.||.|++||+. +++++..+ .|...|++
T Consensus 82 ~----~--~~~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~ 154 (450)
T 2vdu_B 82 D----S--IKRTAAK-VPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNA 154 (450)
T ss_dssp -------------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEE
T ss_pred c----c--ccccCcc-ccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceE
Confidence 0 0 0000000 001223446788899999999999 64 889999999999999 88888777 47789999
Q ss_pred EEEeeCCCCEEEEEEcCCcEEEEeCCCCcEE-----EEecCCCcEEEEEEeeC---CCeEEEEecCCcEEEEECCCCeee
Q 005352 400 VHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-----DWVDIRQIVTAVCYRPD---GQGGIVGSMMGDCRFYNVSDNHLE 471 (701)
Q Consensus 400 l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~-----~~~~~~~~i~~i~~sp~---g~~l~~gs~dg~v~i~d~~~~~~~ 471 (701)
++|+| ++++|++++.+|.|++|++.+++.. ....|...|++++|+|+ +++|++|+.|+.|++||+.++...
T Consensus 155 ~~~sp-~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~ 233 (450)
T 2vdu_B 155 ISIAE-DDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIV 233 (450)
T ss_dssp EEECT-TSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCE
T ss_pred EEEcC-CCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCcee
Confidence 99999 9999999999999999999887654 45568899999999999 999999999999999999877543
Q ss_pred eeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecc-------------------------
Q 005352 472 LDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGL------------------------- 526 (701)
Q Consensus 472 ~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~------------------------- 526 (701)
.. ....|...|.+++|+ ++.+|++++.|+.|++||+.+........
T Consensus 234 ~~-------~~~~h~~~v~~~~~s--d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (450)
T 2vdu_B 234 DK-------WLFGHKHFVSSICCG--KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENND 304 (450)
T ss_dssp EE-------ECCCCSSCEEEEEEC--STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------
T ss_pred ee-------eecCCCCceEEEEEC--CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccc
Confidence 21 133466889999999 78999999999999999988654332221
Q ss_pred cCCCCeEEEEEecCCCEEEEEe-CCCcEEEEeC
Q 005352 527 RRSGNQLSACFTSDGKHIVSAG-EDSNVYMWNC 558 (701)
Q Consensus 527 ~~~~~v~~l~~s~dg~~l~sgs-~Dg~I~iWd~ 558 (701)
.....|.+++|+|++++|++++ .|+.|+||++
T Consensus 305 ~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 305 IIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred cceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence 2345789999999999999999 8999999999
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-25 Score=243.31 Aligned_cols=266 Identities=18% Similarity=0.290 Sum_probs=202.9
Q ss_pred eecccCcceeeecCc---cccccccccceEEEEEccCccchh---hhcccCceeccCCCcEEEEEEccCCC-EEEEEeCC
Q 005352 199 VVDKQGEGERVRLNE---EDAMFCSKVQRVKVYHCKKRSKEL---SALYKGQEIQAHDGSILTMKFSPDGQ-YLASAGDD 271 (701)
Q Consensus 199 ~~~~~~~~~~~~~~~---~~~~~~~~d~~v~vw~~~~~~~~~---~~~~~~~~l~~H~~~I~~l~fspdg~-~Lasgs~D 271 (701)
...|.+.+.++++.+ ..+++++.++.|+||++....... ........+.+|.+.|++|+|+|++. +|++|+.|
T Consensus 124 ~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 203 (430)
T 2xyi_A 124 KINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDD 203 (430)
T ss_dssp EEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTT
T ss_pred EEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCC
Confidence 356778888777665 357778999999999986532111 11233456789999999999999988 99999999
Q ss_pred CcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEc
Q 005352 272 GVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFH 351 (701)
Q Consensus 272 g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (701)
|.|++|++.++...... ..+...+.
T Consensus 204 g~i~vwd~~~~~~~~~~-------------------------------------------------------~~~~~~~~ 228 (430)
T 2xyi_A 204 HTICLWDINATPKEHRV-------------------------------------------------------IDAKNIFT 228 (430)
T ss_dssp SCEEEEETTSCCBGGGE-------------------------------------------------------EECSEEEC
T ss_pred CeEEEEeCCCCCCCCce-------------------------------------------------------eccceeec
Confidence 99999999774311000 02345667
Q ss_pred CCccCeEEEEEecC-C-eEEEEECCCcEEEEECCCC---eeeeee-cCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCC
Q 005352 352 GHSGEILDLSWSKN-N-YLLSASIDKTVRLWRVGND---HCLRVF-PHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVL 425 (701)
Q Consensus 352 ~h~~~I~~l~~s~~-~-~l~s~s~dg~I~iWd~~~~---~~~~~~-~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~ 425 (701)
+|...|.+++|+|+ + +|++++.|+.|++||++++ +.+..+ .|...|++++|+|....+|++|+.||.|++||++
T Consensus 229 ~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~ 308 (430)
T 2xyi_A 229 GHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR 308 (430)
T ss_dssp CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETT
T ss_pred CCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCC
Confidence 89999999999994 4 8999999999999999987 455555 4899999999999333479999999999999999
Q ss_pred CC-cEE-EEecCCCcEEEEEEeeCCC-eEEEEecCCcEEEEECCCCeeeeee------eEEeecccCCCCCCeeEEEEec
Q 005352 426 SC-HVV-DWVDIRQIVTAVCYRPDGQ-GGIVGSMMGDCRFYNVSDNHLELDA------EICVHSKKKAPCKRITGFQFLP 496 (701)
Q Consensus 426 ~~-~~~-~~~~~~~~i~~i~~sp~g~-~l~~gs~dg~v~i~d~~~~~~~~~~------~~~~~~~~~~~~~~i~~l~~~p 496 (701)
+. +.+ .+..|...|++++|+|+++ .|++++.||.|++||+......... ..........|...|.+++|+|
T Consensus 309 ~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p 388 (430)
T 2xyi_A 309 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNP 388 (430)
T ss_dssp CTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECS
T ss_pred CCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECC
Confidence 73 333 5556889999999999985 6889999999999999863211100 0011112345667899999999
Q ss_pred CCCCEEEEEECCCcEEEEeCCcc
Q 005352 497 QDSSKVMVSCADSQVRILQGPNV 519 (701)
Q Consensus 497 ~~~~~l~~~s~dg~I~iwd~~~~ 519 (701)
++..++++++.|+.|+||++...
T Consensus 389 ~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 389 NEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp SSTTEEEEEETTSEEEEEEECHH
T ss_pred CCCCEEEEEECCCCEEEeEcccc
Confidence 54449999999999999998743
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=6.4e-26 Score=263.94 Aligned_cols=253 Identities=18% Similarity=0.178 Sum_probs=201.6
Q ss_pred EEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECC--CCeeeeeec-CCCCeEEEEEeeCC--CCEEEEEEcCCcEEE
Q 005352 348 HEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVG--NDHCLRVFP-HSNYVTCVHFNPVD--DNYFISGSIDGKVRI 421 (701)
Q Consensus 348 ~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~--~~~~~~~~~-h~~~V~~l~f~p~~--~~~l~sgs~dg~v~i 421 (701)
..+.+|.+.|++++|+|++ +|++|+.||+|++||+. +++.+..+. |...|++++|+| + +++|++|+.||.|++
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~-~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH-PKFGTILASCSYDGKVLI 81 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECC-TTSCSEEEEEETTSCEEE
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecC-CCCCCEEEEEeCCCeEEE
Confidence 4568999999999999999 99999999999999998 445666665 999999999998 6 899999999999999
Q ss_pred EeCCCCc---EEEEecCCCcEEEEEEeeC--CCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEec
Q 005352 422 WAVLSCH---VVDWVDIRQIVTAVCYRPD--GQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLP 496 (701)
Q Consensus 422 wd~~~~~---~~~~~~~~~~i~~i~~sp~--g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p 496 (701)
||+.+++ ......|...|++++|+|+ ++.+++|+.||.|++||+++........ ...+...|.++.|+|
T Consensus 82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~------~~~~~~~v~~l~~~p 155 (753)
T 3jro_A 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII------IDAHAIGVNSASWAP 155 (753)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEE------EECCSSCEEEEEECC
T ss_pred EECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeE------eecCCCceEEEEecC
Confidence 9999885 3355568899999999999 9999999999999999998774322211 234567899999999
Q ss_pred C------------CCCEEEEEECCCcEEEEeCCccc----eeeecccCCCCeEEEEEecC---CCEEEEEeCCCcEEEEe
Q 005352 497 Q------------DSSKVMVSCADSQVRILQGPNVI----GKYKGLRRSGNQLSACFTSD---GKHIVSAGEDSNVYMWN 557 (701)
Q Consensus 497 ~------------~~~~l~~~s~dg~I~iwd~~~~~----~~~~~~~~~~~v~~l~~s~d---g~~l~sgs~Dg~I~iWd 557 (701)
. ++..+++++.||.|++||++... .......|...|++++|+|+ +.+|++|+.||.|++||
T Consensus 156 ~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd 235 (753)
T 3jro_A 156 ATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT 235 (753)
T ss_dssp CC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEE
T ss_pred cccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEec
Confidence 5 48899999999999999987542 22333458899999999999 99999999999999999
Q ss_pred CCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCCcccC
Q 005352 558 CIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCAT 637 (701)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~ 637 (701)
+.++...... ...........+..++|+|+ +..+++++.|+.+++
T Consensus 236 ~~~~~~~~~~-------------------------------~~~~~~~~~~~v~~l~~spd----g~~l~s~s~Dg~I~v 280 (753)
T 3jro_A 236 QDNEQGPWKK-------------------------------TLLKEEKFPDVLWRASWSLS----GNVLALSGGDNKVTL 280 (753)
T ss_dssp ESSSSSCCBC-------------------------------CBSSSSCCSSCCCCEEECTT----TCCEEEECSSSCEEC
T ss_pred CCCCCCccee-------------------------------EEeccCCCCCceEEEEEcCC----CCEEEEEcCCCEEEE
Confidence 9886521100 00001112345677889997 678889999999999
Q ss_pred CCCcc
Q 005352 638 WPEEK 642 (701)
Q Consensus 638 W~~~~ 642 (701)
|+...
T Consensus 281 wd~~~ 285 (753)
T 3jro_A 281 WKENL 285 (753)
T ss_dssp CBCCS
T ss_pred EecCC
Confidence 99874
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.9e-26 Score=241.19 Aligned_cols=233 Identities=13% Similarity=0.097 Sum_probs=178.7
Q ss_pred EEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEc
Q 005352 256 MKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVF 335 (701)
Q Consensus 256 l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (701)
..+.+++.+|++|+.||+|++||+.+++.+..+
T Consensus 42 ~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~----------------------------------------------- 74 (343)
T 3lrv_A 42 KSMYYDKWVCMCRCEDGALHFTQLKDSKTITTI----------------------------------------------- 74 (343)
T ss_dssp SSSSEEEEEEEEEEETTEEEEEEESSSSCEEEE-----------------------------------------------
T ss_pred hhhcCCCCEEEEECCCCcEEEEECCCCcEEEEE-----------------------------------------------
Confidence 344568889999999999999999887543322
Q ss_pred CCccccccCCCeEEEcCCccCeEEEEEecCCeEEEEECCCcEEEEECC---------CCeeeeeec--CCCCeEEEEEee
Q 005352 336 PPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVG---------NDHCLRVFP--HSNYVTCVHFNP 404 (701)
Q Consensus 336 ~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~l~s~s~dg~I~iWd~~---------~~~~~~~~~--h~~~V~~l~f~p 404 (701)
. ...|.++.|+|. +++++.|++|++|+.. +++.+..+. |...|.+++|+|
T Consensus 75 ---------------~--~~~v~~~~~~~~--~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 135 (343)
T 3lrv_A 75 ---------------T--TPNPRTGGEHPA--IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHN 135 (343)
T ss_dssp ---------------E--EECCCTTCCCCS--EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC
T ss_pred ---------------e--cCCceeeeeCCc--eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCC
Confidence 1 234556667776 8899999999999655 555455444 668899999998
Q ss_pred -CCCCEEEEEEcCCcEEEEeCCCCcEEEEe--cCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecc
Q 005352 405 -VDDNYFISGSIDGKVRIWAVLSCHVVDWV--DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSK 481 (701)
Q Consensus 405 -~~~~~l~sgs~dg~v~iwd~~~~~~~~~~--~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~ 481 (701)
.++++|++++.||.|++||+++++..... .+...+++++|+|++.+|++|+.||.|++||+++++... ...
T Consensus 136 ~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~------~~~ 209 (343)
T 3lrv_A 136 EVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQAS------SRF 209 (343)
T ss_dssp ---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCC------EEC
T ss_pred CCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCc------cEE
Confidence 35789999999999999999999887554 345579999999999999999999999999999876431 011
Q ss_pred cCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeeccc---CCCCe--EEEEEecCCCEEEEEeC-CCcEEE
Q 005352 482 KKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLR---RSGNQ--LSACFTSDGKHIVSAGE-DSNVYM 555 (701)
Q Consensus 482 ~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~---~~~~v--~~l~~s~dg~~l~sgs~-Dg~I~i 555 (701)
...|...|++++|+| ++.+|++++ ++.|++||+++......... +...+ .+++|+|+|++|++++. |+.|+|
T Consensus 210 ~~~h~~~v~~l~fs~-~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v 287 (343)
T 3lrv_A 210 PVDEEAKIKEVKFAD-NGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTI 287 (343)
T ss_dssp CCCTTSCEEEEEECT-TSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEE
T ss_pred eccCCCCEEEEEEeC-CCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEE
Confidence 123678999999999 789999999 55999999986544322211 22223 46999999999999998 999999
Q ss_pred EeCCCCC
Q 005352 556 WNCIGHE 562 (701)
Q Consensus 556 Wd~~~~~ 562 (701)
|++....
T Consensus 288 ~~~~~~~ 294 (343)
T 3lrv_A 288 YKFDKKT 294 (343)
T ss_dssp EEECTTT
T ss_pred EEEcccc
Confidence 9997654
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-24 Score=220.34 Aligned_cols=284 Identities=14% Similarity=0.125 Sum_probs=187.2
Q ss_pred EEEEEEccCCC---EEEEEeCCCcEEEEEeecC---eeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeee
Q 005352 253 ILTMKFSPDGQ---YLASAGDDGVVRLWQVVED---ERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRR 326 (701)
Q Consensus 253 I~~l~fspdg~---~Lasgs~Dg~I~iWd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (701)
+.+|-|-.-|- .++++++ ..|++|+..++ ++++++.+++.++..+.+.++.... ..+....-....+..+..
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~v~sla~ 119 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNL-VCVALGNLEIREIRALFC 119 (356)
T ss_dssp EEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSC-EEEEECSSSEEEEEEECC
T ss_pred EeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccce-eeeeeccccccceEEEEE
Confidence 55666654433 6888887 68999999998 8888888888766655555433322 223333333333333222
Q ss_pred cCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCCeEEEEE---CCCcEEEEECC-CCeeeeeec-CCCCeEEEE
Q 005352 327 TSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSAS---IDKTVRLWRVG-NDHCLRVFP-HSNYVTCVH 401 (701)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~l~s~s---~dg~I~iWd~~-~~~~~~~~~-h~~~V~~l~ 401 (701)
+.+.... .....-.+|...|..+ +++.++.++ .|+.|++|++. +++.+..+. |...++.++
T Consensus 120 spd~~~~-----------~~~l~s~g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~ 185 (356)
T 2w18_A 120 SSDDESE-----------KQVLLKSGNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILT 185 (356)
T ss_dssp ------C-----------CEEEEEEEEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEE
T ss_pred CCCcccc-----------ccEEEeCCCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEE
Confidence 2220000 1111123455455554 556555554 49999999994 477666554 888888888
Q ss_pred EeeC--CCCEEEEEEcCCcEEEEeCCCCcEEEEec-CC---CcEEEEEEeeCCCeE------------EEEecCCcEEEE
Q 005352 402 FNPV--DDNYFISGSIDGKVRIWAVLSCHVVDWVD-IR---QIVTAVCYRPDGQGG------------IVGSMMGDCRFY 463 (701)
Q Consensus 402 f~p~--~~~~l~sgs~dg~v~iwd~~~~~~~~~~~-~~---~~i~~i~~sp~g~~l------------~~gs~dg~v~i~ 463 (701)
|+|. ++.+|++++.|++|+|||+.+++.+..+. +. ..+.+++|+|+|+.+ ++|+.|++|++|
T Consensus 186 fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklW 265 (356)
T 2w18_A 186 FAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVI 265 (356)
T ss_dssp EEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEE
T ss_pred eeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEE
Confidence 8884 56899999999999999999999886654 32 357788999999887 557789999999
Q ss_pred ECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeE-EEEEecCCC
Q 005352 464 NVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQL-SACFTSDGK 542 (701)
Q Consensus 464 d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~-~l~~s~dg~ 542 (701)
|..+++......+.. ...+...+.+..+ ++.++++++.|++|+|||+.+.........|...+. .++|+|||+
T Consensus 266 d~~tgk~l~v~~~~~---p~Gh~~~~lsg~~---sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~ 339 (356)
T 2w18_A 266 NPKTTLSVGVMLYCL---PPGQAGRFLEGDV---KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDS 339 (356)
T ss_dssp ETTTTEEEEEEEECC---CTTCCCCEEEEEE---ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSS
T ss_pred ECCCCEEEEEEEeec---cCCCcceeEcccc---CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCC
Confidence 999887653221111 1223333333333 367899999999999999998776655555666554 689999999
Q ss_pred EEEEEeCCCcEEEEeC
Q 005352 543 HIVSAGEDSNVYMWNC 558 (701)
Q Consensus 543 ~l~sgs~Dg~I~iWd~ 558 (701)
+|++|+.|++|+|||+
T Consensus 340 ~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 340 HLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEEECTTSCEEEEEE
T ss_pred EEEEEECCCcEEEecC
Confidence 9999999999999995
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.94 E-value=6.9e-25 Score=231.84 Aligned_cols=275 Identities=12% Similarity=0.141 Sum_probs=200.5
Q ss_pred cccCcceeeecC--ccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEE-EEEeCCCcEEEE
Q 005352 201 DKQGEGERVRLN--EEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYL-ASAGDDGVVRLW 277 (701)
Q Consensus 201 ~~~~~~~~~~~~--~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~L-asgs~Dg~I~iW 277 (701)
.|...+.+++++ +..+++|+.+ .++||+....... ...+...+..+++.++++++ ++++.|++|+||
T Consensus 17 ~h~~~V~~v~fs~dg~~la~g~~~-~~~iw~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iW 86 (355)
T 3vu4_A 17 HVSNPVTDYEFNQDQSCLILSTLK-SFEIYNVHPVAHI---------MSQEMRHLSKVRMLHRTNYVAFVTGVKEVVHIW 86 (355)
T ss_dssp --CCCCCEEEECTTSSEEEEECSS-EEEEEEETTEEEE---------EEEECSCCCEEEECTTSSEEEEECSSTTEEEEE
T ss_pred cCCCceEEEEECCCCCEEEEEcCC-EEEEEecCCccee---------eeeecCCeEEEEEcCCCCEEEEEECCccEEEEE
Confidence 355666666554 4555555554 5889997543211 11222357888999988887 567788999999
Q ss_pred EeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCe
Q 005352 278 QVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEI 357 (701)
Q Consensus 278 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I 357 (701)
|+.+++.+. .+. |...|
T Consensus 87 d~~~~~~~~--------------------------------------------------------------~~~-~~~~v 103 (355)
T 3vu4_A 87 DDVKKQDVS--------------------------------------------------------------RIK-VDAPV 103 (355)
T ss_dssp ETTTTEEEE--------------------------------------------------------------EEE-CSSCE
T ss_pred ECCCCcEEE--------------------------------------------------------------EEE-CCCce
Confidence 998876432 222 45689
Q ss_pred EEEEEecCCeEEEEECCCcEEEEECCCC-eeeeeecCCCCeEEEEEeeCCCCEEEE--EEcCCcEEEEeCCCCc------
Q 005352 358 LDLSWSKNNYLLSASIDKTVRLWRVGND-HCLRVFPHSNYVTCVHFNPVDDNYFIS--GSIDGKVRIWAVLSCH------ 428 (701)
Q Consensus 358 ~~l~~s~~~~l~s~s~dg~I~iWd~~~~-~~~~~~~h~~~V~~l~f~p~~~~~l~s--gs~dg~v~iwd~~~~~------ 428 (701)
.+++++++..++ + .|+.|++||+.++ +.+..+.. +...+++++ .++++ |+.||.|++||+.++.
T Consensus 104 ~~v~~~~~~~~~-~-~~~~i~i~d~~~~~~~~~~~~~--~~~~~~~s~---~~la~~sg~~~g~v~iwd~~~~~~~~~~~ 176 (355)
T 3vu4_A 104 KDLFLSREFIVV-S-YGDVISVFKFGNPWKRITDDIR--FGGVCEFSN---GLLVYSNEFNLGQIHITKLQSSGSATTQD 176 (355)
T ss_dssp EEEEECSSEEEE-E-ETTEEEEEESSTTCCBSSCCEE--EEEEEEEET---TEEEEEESSCTTCEEEEECCC--------
T ss_pred EEEEEcCCEEEE-E-EcCEEEEEECCCCceeeEEecc--CCceEEEEc---cEEEEeCCCcCcEEEEEECCCCCcccccc
Confidence 999998876333 2 4789999999988 77666655 455566665 56666 5789999999999865
Q ss_pred -----------EEEEecCCCcEEEEEEeeCCCeEEEEecCCc-EEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEec
Q 005352 429 -----------VVDWVDIRQIVTAVCYRPDGQGGIVGSMMGD-CRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLP 496 (701)
Q Consensus 429 -----------~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~-v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p 496 (701)
...+..|...|++++|+|+|++|++|+.||+ |++||+++++...... ...|...|.+++|+|
T Consensus 177 ~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~------~g~h~~~v~~~~~s~ 250 (355)
T 3vu4_A 177 QGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFR------RGLDRADVVDMKWST 250 (355)
T ss_dssp ----------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEE------CTTCCSCEEEEEECT
T ss_pred ccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEE------cCCCCCcEEEEEECC
Confidence 4566789999999999999999999999998 9999999876543211 122668899999999
Q ss_pred CCCCEEEEEECCCcEEEEeCCccce----ee------------------ecc-cCCCCeEEEEEecCCCEEEEEeCCCcE
Q 005352 497 QDSSKVMVSCADSQVRILQGPNVIG----KY------------------KGL-RRSGNQLSACFTSDGKHIVSAGEDSNV 553 (701)
Q Consensus 497 ~~~~~l~~~s~dg~I~iwd~~~~~~----~~------------------~~~-~~~~~v~~l~~s~dg~~l~sgs~Dg~I 553 (701)
++.+|++++.|+.|++||+..... .+ ... ........++|++++++|++++.||.+
T Consensus 251 -~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~ 329 (355)
T 3vu4_A 251 -DGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMI 329 (355)
T ss_dssp -TSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEE
T ss_pred -CCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeE
Confidence 789999999999999999864321 00 000 012234678999999999999999999
Q ss_pred EEEeCCCCC
Q 005352 554 YMWNCIGHE 562 (701)
Q Consensus 554 ~iWd~~~~~ 562 (701)
++|++..++
T Consensus 330 ~~~~~~~~~ 338 (355)
T 3vu4_A 330 ETFKVVFDD 338 (355)
T ss_dssp EEEEEEEET
T ss_pred EEEEEEcCC
Confidence 999988765
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-25 Score=239.96 Aligned_cols=272 Identities=14% Similarity=0.044 Sum_probs=170.2
Q ss_pred CCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeee-----e-cCCCCeEEEEEee-------CCCCEEEEEEcCC
Q 005352 352 GHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRV-----F-PHSNYVTCVHFNP-------VDDNYFISGSIDG 417 (701)
Q Consensus 352 ~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~-----~-~h~~~V~~l~f~p-------~~~~~l~sgs~dg 417 (701)
.|...+....+.+++ +|++++.|++|+|||+.++.+... + .|.+.|++++|+| .++++|++|+.|+
T Consensus 87 ~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~ 166 (393)
T 4gq1_A 87 LHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDC 166 (393)
T ss_dssp ----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTS
T ss_pred ccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCC
Confidence 455555555556666 899999999999999998876542 2 2999999999987 2678999999999
Q ss_pred cEEEEeCCCCc-EEEEecCCCcEEEEEEeeCCC-eEEEEecCCcEEEEECCCCeeeeeeeEEe-----------------
Q 005352 418 KVRIWAVLSCH-VVDWVDIRQIVTAVCYRPDGQ-GGIVGSMMGDCRFYNVSDNHLELDAEICV----------------- 478 (701)
Q Consensus 418 ~v~iwd~~~~~-~~~~~~~~~~i~~i~~sp~g~-~l~~gs~dg~v~i~d~~~~~~~~~~~~~~----------------- 478 (701)
+|+|||+.++. ......|...+.+++|+|++. +|++|+.||.|++||+++++.........
T Consensus 167 tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 246 (393)
T 4gq1_A 167 TLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVN 246 (393)
T ss_dssp EEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC-
T ss_pred eEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccccccee
Confidence 99999998765 457778999999999999874 79999999999999998876433221100
Q ss_pred ecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 005352 479 HSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNC 558 (701)
Q Consensus 479 ~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~ 558 (701)
......+...+.++.|.+.++..+++++.|+.+++||+...........+...+..+.+.|+++.+...
T Consensus 247 ~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----------- 315 (393)
T 4gq1_A 247 TCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLF----------- 315 (393)
T ss_dssp -----CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSS-----------
T ss_pred eeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEcccccccccc-----------
Confidence 011234667889999986689999999999999999986543332222233333333333332111000
Q ss_pred CCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCCcccCC
Q 005352 559 IGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATW 638 (701)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W 638 (701)
.......+.|.. .+..+++++.|+.+++|
T Consensus 316 -------------------------------------------------~~~~~~~~~~~~--~~~~~~sgs~Dg~V~lw 344 (393)
T 4gq1_A 316 -------------------------------------------------PSLLGACPHPRY--MDYFATAHSQHGLIQLI 344 (393)
T ss_dssp -------------------------------------------------CCSSCCEECSSC--TTEEEEEETTTTEEEEE
T ss_pred -------------------------------------------------CcceeEEEccCC--CCEEEEEECCCCEEEEE
Confidence 000011122210 12233455667777777
Q ss_pred CCccCCCCccccccccchhhhhhhhhcccccccccCCCccEEEEecCCCeEeEEeecCCC
Q 005352 639 PEEKLPALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFLNYGLP 698 (701)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivTgg~DG~Irvw~~~g~p 698 (701)
+......+..+..| ...|.+++++++ |++||+|+.|| |.+|+..|+.
T Consensus 345 d~~~~~~~~~~~~~-----------~~~V~svafspd-G~~LA~as~~G-v~lvrL~gf~ 391 (393)
T 4gq1_A 345 NTYEKDSNSIPIQL-----------GMPIVDFCWHQD-GSHLAIATEGS-VLLTRLMGFT 391 (393)
T ss_dssp ETTCTTCCEEEEEC-----------SSCEEEEEECTT-SSEEEEEESSE-EEEEEEGGGC
T ss_pred ECCCCcEEEEecCC-----------CCcEEEEEEcCC-CCEEEEEeCCC-eEEEEEeCcc
Confidence 77666655444333 346888899999 99999998655 7777776653
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=9.6e-26 Score=243.85 Aligned_cols=228 Identities=10% Similarity=0.087 Sum_probs=173.3
Q ss_pred eeeecCccccccccccceEEEEEccCccc----------------------hhhhcccCceec-cCCCcEEEEEEccCCC
Q 005352 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRSK----------------------ELSALYKGQEIQ-AHDGSILTMKFSPDGQ 263 (701)
Q Consensus 207 ~~~~~~~~~~~~~~~d~~v~vw~~~~~~~----------------------~~~~~~~~~~l~-~H~~~I~~l~fspdg~ 263 (701)
.++++++..+++++.|++|+ +...... ++........+. +|...|.+++|||+|+
T Consensus 21 v~~SpDG~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~~vawSPdG~ 98 (588)
T 2j04_A 21 LTWARDGTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPRVCKPSPIDD 98 (588)
T ss_dssp EEECTTSCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEEEEEECSSSS
T ss_pred EEECCCCCEEEEEcCCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEEEEEECCCCC
Confidence 45667777888899999996 4211110 000001111222 5688899999999999
Q ss_pred EEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCcccccc
Q 005352 264 YLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRIL 343 (701)
Q Consensus 264 ~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (701)
+||+++.||.|+|||... .+
T Consensus 99 ~LAs~s~dg~V~iwd~~~--~l---------------------------------------------------------- 118 (588)
T 2j04_A 99 WMAVLSNNGNVSVFKDNK--ML---------------------------------------------------------- 118 (588)
T ss_dssp CEEEEETTSCEEEEETTE--EE----------------------------------------------------------
T ss_pred EEEEEeCCCcEEEEeCCc--ee----------------------------------------------------------
Confidence 999999999999999432 11
Q ss_pred CCCeEEEcCCc-----cCeEEEEEecCC-eEEEEECCCcEEEEECCCCee-------eeee-----cCCCCeEEEEEeeC
Q 005352 344 EKPLHEFHGHS-----GEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHC-------LRVF-----PHSNYVTCVHFNPV 405 (701)
Q Consensus 344 ~~~~~~~~~h~-----~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~-------~~~~-----~h~~~V~~l~f~p~ 405 (701)
..+. |. ..|.+++|||+| +|++|+.||+|+|||+.++.. +.++ .|...|.+++|+|
T Consensus 119 ----~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSP- 192 (588)
T 2j04_A 119 ----TNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYE- 192 (588)
T ss_dssp ----EECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEET-
T ss_pred ----eecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcC-
Confidence 1222 33 359999999999 999999999999999998852 4554 2678999999999
Q ss_pred CCCEEEEEEcCCcEEEEeCCCCcEE---EEe--cCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeec
Q 005352 406 DDNYFISGSIDGKVRIWAVLSCHVV---DWV--DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHS 480 (701)
Q Consensus 406 ~~~~l~sgs~dg~v~iwd~~~~~~~---~~~--~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~ 480 (701)
++ +++++.|++|++||+.++... ... .|...|.+++|+ |+.|++++ ++.|++||+.+++....
T Consensus 193 dg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~------- 260 (588)
T 2j04_A 193 DV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSL------- 260 (588)
T ss_dssp TE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEE-------
T ss_pred Cc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEE-------
Confidence 77 888999999999999887742 222 577899999999 68888887 69999999998775321
Q ss_pred ccCCCCCCeeEEEE--ecCCCCEEEEEECCCcEEEEeCC
Q 005352 481 KKKAPCKRITGFQF--LPQDSSKVMVSCADSQVRILQGP 517 (701)
Q Consensus 481 ~~~~~~~~i~~l~~--~p~~~~~l~~~s~dg~I~iwd~~ 517 (701)
...|...+..+.| +| ++..+++++.+|+ ++|...
T Consensus 261 -~~gh~~~V~~va~~~s~-d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 261 -KTGSLENFHIIPLNHEK-ESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp -ECSCCSCCCEEEETTCS-SCEEEEECSSCEE-EEEESS
T ss_pred -EcCCCceEEEEEeeeCC-CCCEEEEEcCCCC-EEEeec
Confidence 2247788999999 98 7789999999999 999864
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-24 Score=231.54 Aligned_cols=248 Identities=11% Similarity=0.123 Sum_probs=191.8
Q ss_pred cCCccCeEEEEEecCC-eE-EEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEE-EEcCCcEEEEeCCCC
Q 005352 351 HGHSGEILDLSWSKNN-YL-LSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFIS-GSIDGKVRIWAVLSC 427 (701)
Q Consensus 351 ~~h~~~I~~l~~s~~~-~l-~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~s-gs~dg~v~iwd~~~~ 427 (701)
.+| ..+.+++|+|++ ++ ++++.|++|++||+.+++.+..+.+...+.+++|+| ++++|++ ++.++.|++||+.++
T Consensus 29 ~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp-dg~~l~~~~~~~~~v~v~d~~~~ 106 (391)
T 1l0q_A 29 PVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSP-DGKQVYVTNMASSTLSVIDTTSN 106 (391)
T ss_dssp ECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECT-TSSEEEEEETTTTEEEEEETTTT
T ss_pred ecC-CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccceEECC-CCCEEEEEECCCCEEEEEECCCC
Confidence 344 358999999999 55 677799999999999999999998777999999999 8887755 446799999999999
Q ss_pred cEEEEecCCCcEEEEEEeeCCCeE-EEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEE-EEE
Q 005352 428 HVVDWVDIRQIVTAVCYRPDGQGG-IVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKV-MVS 505 (701)
Q Consensus 428 ~~~~~~~~~~~i~~i~~sp~g~~l-~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l-~~~ 505 (701)
+.+....+...+.+++|+|+++.+ ++++.++.|++||+.+++...... ....+.+++|+| ++..+ +++
T Consensus 107 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~---------~~~~~~~~~~~~-dg~~l~~~~ 176 (391)
T 1l0q_A 107 TVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVS---------VGRSPKGIAVTP-DGTKVYVAN 176 (391)
T ss_dssp EEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE---------CCSSEEEEEECT-TSSEEEEEE
T ss_pred eEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEe---------cCCCcceEEECC-CCCEEEEEe
Confidence 988888788889999999999987 677889999999999887543211 124578999999 55555 677
Q ss_pred ECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEe---CCCcEEEEeCCCCCCCCccccccccccccccCCc
Q 005352 506 CADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAG---EDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNA 582 (701)
Q Consensus 506 s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs---~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~ 582 (701)
+.++.|++||+.+....... .+...+.+++|+|++++|++++ .++.|++||+.+++.. ..+.
T Consensus 177 ~~~~~v~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~--------~~~~------ 241 (391)
T 1l0q_A 177 FDSMSISVIDTVTNSVIDTV-KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKIT--------ARIP------ 241 (391)
T ss_dssp TTTTEEEEEETTTTEEEEEE-ECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEE--------EEEE------
T ss_pred CCCCEEEEEECCCCeEEEEE-ecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEE--------EEEe------
Confidence 78999999999865443332 3566889999999999999888 6899999999876410 0110
Q ss_pred eEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccc-cccCCCCcccCCCCccCCCCcccccc
Q 005352 583 SIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEY-VFESFPKGCATWPEEKLPALSQLSSA 652 (701)
Q Consensus 583 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~-~~~s~d~~~~~W~~~~~~~~~~~~~~ 652 (701)
.+..+..++++|+ +..+ ++++.++.+++|+.+....+..+..+
T Consensus 242 -----------------------~~~~~~~~~~s~d----g~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~ 285 (391)
T 1l0q_A 242 -----------------------VGPDPAGIAVTPD----GKKVYVALSFXNTVSVIDTATNTITATMAVG 285 (391)
T ss_dssp -----------------------CCSSEEEEEECTT----SSEEEEEETTTTEEEEEETTTTEEEEEEECS
T ss_pred -----------------------cCCCccEEEEccC----CCEEEEEcCCCCEEEEEECCCCcEEEEEECC
Confidence 0112345677886 4444 67788999999999887766655444
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-22 Score=206.71 Aligned_cols=213 Identities=9% Similarity=0.050 Sum_probs=151.0
Q ss_pred CCcEEEEEEccC----CCEEEEEeCCCcEEEEEeecCeeeeee-cCCCCCCceeEEeeccCCCcceeeeccccceeeEEe
Q 005352 250 DGSILTMKFSPD----GQYLASAGDDGVVRLWQVVEDERLTEV-DIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSL 324 (701)
Q Consensus 250 ~~~I~~l~fspd----g~~Lasgs~Dg~I~iWd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (701)
.+.|++|+|+|| ++++++++.+ +++|++.+++.+... ..+... +..+.+.+.
T Consensus 111 ~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l~~g~lv~ss~~g~d~~-------------V~~~~~s~d-------- 167 (356)
T 2w18_A 111 IREIRALFCSSDDESEKQVLLKSGNI--KAVLGLTKRRLVSSSGTLSDQQ-------------VEVMTFAED-------- 167 (356)
T ss_dssp EEEEEEECC------CCEEEEEEEEE--EEEEEETTTEEEEEESSSTTCE-------------EEEEEECTT--------
T ss_pred ccceEEEEECCCccccccEEEeCCCe--EEEEecCCCcEEEecccCCCCc-------------EEEEEECCC--------
Confidence 346778888888 8899998854 888998777654432 111111 111111110
Q ss_pred eecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEec---CC-eEEEEECCCcEEEEECCCCeeeeeec-C---CCC
Q 005352 325 RRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK---NN-YLLSASIDKTVRLWRVGNDHCLRVFP-H---SNY 396 (701)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~---~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h---~~~ 396 (701)
++.+..+.+|...+..++|++ ++ +|++++.|++|+|||+.++++++++. | ...
T Consensus 168 -------------------G~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~ 228 (356)
T 2w18_A 168 -------------------GGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQAS 228 (356)
T ss_dssp -------------------SCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CC
T ss_pred -------------------CceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceee
Confidence 134556678999999999999 55 99999999999999999999999986 3 346
Q ss_pred eEEEEEeeCCCCEE------------EEEEcCCcEEEEeCCCCcEEEEe------cCCCcEEEEEEeeCCCeEEEEecCC
Q 005352 397 VTCVHFNPVDDNYF------------ISGSIDGKVRIWAVLSCHVVDWV------DIRQIVTAVCYRPDGQGGIVGSMMG 458 (701)
Q Consensus 397 V~~l~f~p~~~~~l------------~sgs~dg~v~iwd~~~~~~~~~~------~~~~~i~~i~~sp~g~~l~~gs~dg 458 (701)
+.+++|+| ++.++ ++|+.|++|++||..+++.+... +|...+.+. +.++..+++|+.|+
T Consensus 229 v~~vafSp-dG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg--~~sg~~lASgS~Dg 305 (356)
T 2w18_A 229 VCHKAYSE-MGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEG--DVKDHCAAAILTSG 305 (356)
T ss_dssp CEEEEEEE-TTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEE--EEETTEEEEEETTS
T ss_pred eEEEEECC-CCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcc--ccCCCEEEEEcCCC
Confidence 88889999 88876 56888999999999999877543 333334333 33478899999999
Q ss_pred cEEEEECCCCeeeeeeeEEeecccCCCCCC-eeEEEEecCCCCEEEEEECCCcEEEEeC
Q 005352 459 DCRFYNVSDNHLELDAEICVHSKKKAPCKR-ITGFQFLPQDSSKVMVSCADSQVRILQG 516 (701)
Q Consensus 459 ~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~-i~~l~~~p~~~~~l~~~s~dg~I~iwd~ 516 (701)
+|+|||+.+++..... ..|... +..++|+| ++++|++|+.|++|+|||.
T Consensus 306 TIkIWDl~tGk~l~tL--------~gH~~~vvs~vafSP-DG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 306 TIAIWDLLLGQCTALL--------PPVSDQHWSFVKWSG-TDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp CEEEEETTTCSEEEEE--------CCC--CCCCEEEECS-SSSEEEEECTTSCEEEEEE
T ss_pred cEEEEECCCCcEEEEe--------cCCCCCeEEEEEECC-CCCEEEEEECCCcEEEecC
Confidence 9999999998765431 123333 45689999 7999999999999999984
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-22 Score=219.29 Aligned_cols=258 Identities=10% Similarity=0.046 Sum_probs=199.6
Q ss_pred eEEEEEc--cCccchhhhcccCceeccCCCcEEEEEEcc--------------CCCEEEEEeCC------CcEEEEEeec
Q 005352 224 RVKVYHC--KKRSKELSALYKGQEIQAHDGSILTMKFSP--------------DGQYLASAGDD------GVVRLWQVVE 281 (701)
Q Consensus 224 ~v~vw~~--~~~~~~~~~~~~~~~l~~H~~~I~~l~fsp--------------dg~~Lasgs~D------g~I~iWd~~~ 281 (701)
.+++||. ..... .....+.+|...+..+++++ .+..|+.++.+ +.|++||+..
T Consensus 94 ~i~lwd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g 168 (415)
T 2hqs_A 94 AYQLVDTGGAPGTV-----LAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG 168 (415)
T ss_dssp EEEEEECSSSTTCE-----EEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS
T ss_pred EEEEEeCCCCCCCE-----EeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC
Confidence 8999998 54321 11235677888888887775 26677776664 7999999864
Q ss_pred CeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEE
Q 005352 282 DERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLS 361 (701)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~ 361 (701)
. ....+.+|...|.+++
T Consensus 169 ~---------------------------------------------------------------~~~~l~~~~~~v~~~~ 185 (415)
T 2hqs_A 169 Y---------------------------------------------------------------NQFVVHRSPQPLMSPA 185 (415)
T ss_dssp C---------------------------------------------------------------SCEEEEEESSCEEEEE
T ss_pred C---------------------------------------------------------------CCEEEeCCCCcceeeE
Confidence 2 2344566888999999
Q ss_pred EecCC-eEEEEECCC---cEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEE-EEEcCCc--EEEEeCCCCcEEEEec
Q 005352 362 WSKNN-YLLSASIDK---TVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFI-SGSIDGK--VRIWAVLSCHVVDWVD 434 (701)
Q Consensus 362 ~s~~~-~l~s~s~dg---~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~-sgs~dg~--v~iwd~~~~~~~~~~~ 434 (701)
|+|++ +|++++.++ .|++||+.++++.....+...+.+++|+| ++++|+ +++.++. |++||+.+++...+..
T Consensus 186 ~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~sp-dg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~ 264 (415)
T 2hqs_A 186 WSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSP-DGSKLAFALSKTGSLNLYVMDLASGQIRQVTD 264 (415)
T ss_dssp ECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTTCCEEECCC
T ss_pred EcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcC-CCCEEEEEEecCCCceEEEEECCCCCEEeCcC
Confidence 99999 899999875 99999999998887777888999999999 998877 6666654 9999999998877778
Q ss_pred CCCcEEEEEEeeCCCeEEEEec-CC--cEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECC---
Q 005352 435 IRQIVTAVCYRPDGQGGIVGSM-MG--DCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD--- 508 (701)
Q Consensus 435 ~~~~i~~i~~sp~g~~l~~gs~-dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~d--- 508 (701)
+...+.+++|+|+|+.|++++. ++ .|.+||+.+++... ...+...+..++|+| ++++|++++.+
T Consensus 265 ~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~---------l~~~~~~~~~~~~sp-dG~~l~~~~~~~g~ 334 (415)
T 2hqs_A 265 GRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQR---------ITWEGSQNQDADVSS-DGKFMVMVSSNGGQ 334 (415)
T ss_dssp CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEE---------CCCSSSEEEEEEECT-TSSEEEEEEECSSC
T ss_pred CCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEE---------EecCCCcccCeEECC-CCCEEEEEECcCCc
Confidence 8889999999999999998876 44 67777888765321 112335688999999 67888777764
Q ss_pred CcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCC---cEEEEeCCCCC
Q 005352 509 SQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDS---NVYMWNCIGHE 562 (701)
Q Consensus 509 g~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg---~I~iWd~~~~~ 562 (701)
..|++||+.+..... ...+ ..+.+++|+|+|++|++++.++ .|++||+.++.
T Consensus 335 ~~i~~~d~~~~~~~~-l~~~-~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~ 389 (415)
T 2hqs_A 335 QHIAKQDLATGGVQV-LSST-FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF 389 (415)
T ss_dssp EEEEEEETTTCCEEE-CCCS-SSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC
T ss_pred eEEEEEECCCCCEEE-ecCC-CCcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCc
Confidence 589999998654422 2223 3899999999999999998877 79999987554
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.5e-22 Score=223.88 Aligned_cols=337 Identities=11% Similarity=0.108 Sum_probs=234.3
Q ss_pred eeeecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEe--ecCee
Q 005352 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQV--VEDER 284 (701)
Q Consensus 207 ~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~--~~~~~ 284 (701)
..+++.+..+++++.++.|.+||...... .+.+..+.. +.+++|+|||++|++++.|+.|++||+ .+++.
T Consensus 143 ~~~~p~~~~~vs~~~d~~V~v~D~~t~~~-------~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~ 214 (543)
T 1nir_A 143 NDLDLPNLFSVTLRDAGQIALVDGDSKKI-------VKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTK 214 (543)
T ss_dssp SCCCGGGEEEEEEGGGTEEEEEETTTCCE-------EEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEE
T ss_pred cccCCCCEEEEEEcCCCeEEEEECCCceE-------EEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcE
Confidence 34555566667788899999998654321 133442333 899999999999999999999999999 55543
Q ss_pred eeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEec
Q 005352 285 LTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK 364 (701)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~ 364 (701)
+. .+. +...+..++|+|
T Consensus 215 ~~--------------------------------------------------------------~i~-~g~~p~~va~sp 231 (543)
T 1nir_A 215 VA--------------------------------------------------------------EIK-IGIEARSVESSK 231 (543)
T ss_dssp EE--------------------------------------------------------------EEE-CCSEEEEEEECC
T ss_pred EE--------------------------------------------------------------EEe-cCCCcceEEeCC
Confidence 22 223 234578999999
Q ss_pred ----CC-eEEEEE-CCCcEEEEECCCCeeeeeecC------------CCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCC
Q 005352 365 ----NN-YLLSAS-IDKTVRLWRVGNDHCLRVFPH------------SNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS 426 (701)
Q Consensus 365 ----~~-~l~s~s-~dg~I~iWd~~~~~~~~~~~h------------~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~ 426 (701)
++ +|++++ .+++|.+||..+++++..+.. ...+..+.++|....++++...++.|.+||+.+
T Consensus 232 ~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~ 311 (543)
T 1nir_A 232 FKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKD 311 (543)
T ss_dssp STTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTT
T ss_pred CcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecC
Confidence 98 777777 489999999999999888752 237899999994455566777889999999987
Q ss_pred CcEEE--EecCCCcEEEEEEeeCCCeEEEEe-cCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEE
Q 005352 427 CHVVD--WVDIRQIVTAVCYRPDGQGGIVGS-MMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVM 503 (701)
Q Consensus 427 ~~~~~--~~~~~~~i~~i~~sp~g~~l~~gs-~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~ 503 (701)
.+.+. .+.+...+..+.|+|+|+++++++ .+++|.+||+.++++..... .....|......+ ++|+.+..++
T Consensus 312 ~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~----~g~~ph~g~g~~~-~~p~~g~~~~ 386 (543)
T 1nir_A 312 IDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVD----VGKTPHPGRGANF-VHPKYGPVWS 386 (543)
T ss_dssp SSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEE----CSSSBCCTTCEEE-EETTTEEEEE
T ss_pred CCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeec----cCCCCCCCCCccc-CCCCCccEEE
Confidence 65432 455667788999999999877665 58999999999987654321 1122333333333 4674466666
Q ss_pred EEE-CCCcEEEEeCCc-------cceeeecccCCCCeEEEEEecCCCEEEEEe-------CCCcEEEEeCCCCCCCCccc
Q 005352 504 VSC-ADSQVRILQGPN-------VIGKYKGLRRSGNQLSACFTSDGKHIVSAG-------EDSNVYMWNCIGHEEPAHDQ 568 (701)
Q Consensus 504 ~~s-~dg~I~iwd~~~-------~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs-------~Dg~I~iWd~~~~~~~~~~~ 568 (701)
++. .|++|.+||..+ .........+...+..++++|+|++|++++ .+++|.+||+.+.+.....
T Consensus 387 s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~- 465 (543)
T 1nir_A 387 TSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQV- 465 (543)
T ss_dssp EEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEE-
T ss_pred eccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEE-
Confidence 665 589999999876 444444444667788899999999999987 2779999999988732000
Q ss_pred cccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCcccccc-----CCCCcccCCCCccC
Q 005352 569 AKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFE-----SFPKGCATWPEEKL 643 (701)
Q Consensus 569 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~-----s~d~~~~~W~~~~~ 643 (701)
..+ -.|.|.. .....+..++|+|+ +..+... +.++.|.+||..++
T Consensus 466 -~~v-------------~~~~~~~------------~~~~~~~~~~~~~~----g~~~~~s~~~~~~~~~~i~v~D~~t~ 515 (543)
T 1nir_A 466 -LPI-------------AEWADLG------------EGAKRVVQPEYNKR----GDEVWFSVWNGKNDSSALVVVDDKTL 515 (543)
T ss_dssp -ECH-------------HHHHCCC------------SSCCEEEEEEECSS----SSEEEEEEECCTTSCCEEEEEETTTT
T ss_pred -eec-------------hhhcccC------------CCCCceEeccCCCC----CCEEEEEeecCCCCCCeEEEEECCCc
Confidence 000 0011110 00123445678887 4444432 24788999999998
Q ss_pred CCCcccc
Q 005352 644 PALSQLS 650 (701)
Q Consensus 644 ~~~~~~~ 650 (701)
+++..+.
T Consensus 516 ~~~~~i~ 522 (543)
T 1nir_A 516 KLKAVVK 522 (543)
T ss_dssp EEEEEEC
T ss_pred eEEEeec
Confidence 8776664
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=7.4e-22 Score=238.25 Aligned_cols=410 Identities=11% Similarity=0.031 Sum_probs=264.3
Q ss_pred ceeeecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCC------CcEEEEEe
Q 005352 206 GERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDD------GVVRLWQV 279 (701)
Q Consensus 206 ~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D------g~I~iWd~ 279 (701)
+....++++.+++.+. +.|.+|+..... .+.+.+|.+.|.+++|||||++||+++.+ ..|.+|++
T Consensus 17 ~~~~~~S~~~iaf~~~-~~l~~~~~~gg~--------~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~ 87 (1045)
T 1k32_A 17 LLNPDIHGDRIIFVCC-DDLWEHDLKSGS--------TRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNG 87 (1045)
T ss_dssp CEEEEEETTEEEEEET-TEEEEEETTTCC--------EEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEET
T ss_pred EeCcEEeCCEEEEEEC-CcEEEEECCCCc--------EEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEEC
Confidence 3344445666666554 689999875432 13567799999999999999999988654 37999998
Q ss_pred ecCeeeeeecCCCCCC-------ceeEEeeccCCCcceeeecc-c--cceeeEEeeecC---------Ccc-------EE
Q 005352 280 VEDERLTEVDIPEIDP-------SCIYFTVNHLSELKPLFMDK-E--KISILKSLRRTS---------ESA-------CV 333 (701)
Q Consensus 280 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~---------~~~-------~~ 333 (701)
.+++ ...+..+.... ..+.|++++. +....... . ....+..+.... ... .+
T Consensus 88 ~~g~-~~~lt~~~~~~~~~~~~~~~~~~SpDg~--ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l 164 (1045)
T 1k32_A 88 ENGE-IKRITYFSGKSTGRRMFTDVAGFDPDGN--LIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRR 164 (1045)
T ss_dssp TTTE-EEECCCCCEEEETTEECSEEEEECTTCC--EEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEE
T ss_pred CCCC-eEEcccCCCcccccccccccccCCCCCE--EEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEE
Confidence 8776 33343332222 3344444332 11111100 0 000011100000 000 00
Q ss_pred EcC-----------------Ccccc-ccCCCeEEEcCCccCeEEEEEecCCeEEEEECCCcEEEEECCC-CeeeeeecCC
Q 005352 334 VFP-----------------PKVFR-ILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGN-DHCLRVFPHS 394 (701)
Q Consensus 334 ~~~-----------------~~~~~-~~~~~~~~~~~h~~~I~~l~~s~~~~l~s~s~dg~I~iWd~~~-~~~~~~~~h~ 394 (701)
... ..+|. ........+.+|...+.++.|+++..+++++.++++.||.+.. +.....+.+.
T Consensus 165 ~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~ 244 (1045)
T 1k32_A 165 VIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSF 244 (1045)
T ss_dssp EEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCCC
T ss_pred EEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCCEEEEEEeccCceEEEEEeCCCCcceEecCC
Confidence 000 00000 0113345568899999999999886667778889999998653 3334444433
Q ss_pred CCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEec-----------CCCcEEEEEEe-eCCCeEEEEecCCcEEE
Q 005352 395 NYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVD-----------IRQIVTAVCYR-PDGQGGIVGSMMGDCRF 462 (701)
Q Consensus 395 ~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~-----------~~~~i~~i~~s-p~g~~l~~gs~dg~v~i 462 (701)
..+...+|+| ++++|+.+. ++.|++||+...++..... +...+.+++|+ |+|+.|++++ ++.+.+
T Consensus 245 ~~~~~~~~Sp-DG~~la~~~-~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~ 321 (1045)
T 1k32_A 245 TDYYPRHLNT-DGRRILFSK-GGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFI 321 (1045)
T ss_dssp CSSCEEEEEE-SSSCEEEEE-TTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEE
T ss_pred CCcceeeEcC-CCCEEEEEe-CCEEEEecCCceEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEE
Confidence 4567789999 999888874 8999999996555443222 23368899999 9999999887 789999
Q ss_pred EECCCCeeeeeeeEEeecccCCCCC-CeeEEEEecCCCCEEEEEECCCcEE-EEeCCccceeeecccCCCCeEEEEEecC
Q 005352 463 YNVSDNHLELDAEICVHSKKKAPCK-RITGFQFLPQDSSKVMVSCADSQVR-ILQGPNVIGKYKGLRRSGNQLSACFTSD 540 (701)
Q Consensus 463 ~d~~~~~~~~~~~~~~~~~~~~~~~-~i~~l~~~p~~~~~l~~~s~dg~I~-iwd~~~~~~~~~~~~~~~~v~~l~~s~d 540 (701)
|++..+.... ...+.. .+..++|+ ++..++.++.++.+. +||.......... .+...+..++|+||
T Consensus 322 ~~~~~~~~~~---------~~~~~~~~~~~~~~s--dg~~l~~~s~~~~l~~~~d~~~~~~~~l~-~~~~~~~~~~~SpD 389 (1045)
T 1k32_A 322 QDVSGTYVLK---------VPEPLRIRYVRRGGD--TKVAFIHGTREGDFLGIYDYRTGKAEKFE-ENLGNVFAMGVDRN 389 (1045)
T ss_dssp ECTTSSBEEE---------CSCCSCEEEEEECSS--SEEEEEEEETTEEEEEEEETTTCCEEECC-CCCCSEEEEEECTT
T ss_pred EcCCCCceEE---------ccCCCcceEEeeeEc--CCCeEEEEECCCceEEEEECCCCCceEec-CCccceeeeEECCC
Confidence 9998765321 122334 68889998 678888888888888 8998754332222 46788999999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCcc
Q 005352 541 GKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARF 620 (701)
Q Consensus 541 g~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~ 620 (701)
|++|++++.++.|++||+.+++.... . ......+..++|+|+
T Consensus 390 G~~la~~~~~~~v~~~d~~tg~~~~~--------~----------------------------~~~~~~v~~~~~SpD-- 431 (1045)
T 1k32_A 390 GKFAVVANDRFEIMTVDLETGKPTVI--------E----------------------------RSREAMITDFTISDN-- 431 (1045)
T ss_dssp SSEEEEEETTSEEEEEETTTCCEEEE--------E----------------------------ECSSSCCCCEEECTT--
T ss_pred CCEEEEECCCCeEEEEECCCCceEEe--------c----------------------------cCCCCCccceEECCC--
Confidence 99999999999999999988762100 0 001223455678887
Q ss_pred ccCccccccCCC----------CcccCCCCccCCCCccccccccchhhhhhhhhcccccccccCCCccEEEEecCCCeEe
Q 005352 621 SLGQEYVFESFP----------KGCATWPEEKLPALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIR 690 (701)
Q Consensus 621 ~~~~~~~~~s~d----------~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivTgg~DG~Ir 690 (701)
+..++..+.+ +.+.+|+..... +..+..+ ...+..++++++ |+.|++++.++..+
T Consensus 432 --G~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~-----------~~~~~~~~~spd-G~~l~~~s~~~~~~ 496 (1045)
T 1k32_A 432 --SRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTE-----------NSHDYAPAFDAD-SKNLYYLSYRSLDP 496 (1045)
T ss_dssp --SCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCS-----------SSBEEEEEECTT-SCEEEEEESCCCCC
T ss_pred --CCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCC-----------CcccCCceEcCC-CCEEEEEecccCCc
Confidence 4555544433 478999987655 4444333 123445678888 99999999999888
Q ss_pred EEeec
Q 005352 691 SFLNY 695 (701)
Q Consensus 691 vw~~~ 695 (701)
+|...
T Consensus 497 ~~~~~ 501 (1045)
T 1k32_A 497 SPDRV 501 (1045)
T ss_dssp EECSS
T ss_pred Ccchh
Confidence 88643
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-21 Score=204.24 Aligned_cols=273 Identities=12% Similarity=0.185 Sum_probs=189.1
Q ss_pred ccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCC-CcEEEEEee--cCeeeeeecCCCCCC
Q 005352 219 CSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDD-GVVRLWQVV--EDERLTEVDIPEIDP 295 (701)
Q Consensus 219 ~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D-g~I~iWd~~--~~~~~~~~~~~~~~~ 295 (701)
++.++.|++|++.... .... .....|...+.+++|+|+|++|++++.+ +.|.+|++. +++.
T Consensus 11 ~~~~~~v~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~----------- 74 (343)
T 1ri6_A 11 SPESQQIHVWNLNHEG-ALTL----TQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGAL----------- 74 (343)
T ss_dssp EGGGTEEEEEEECTTS-CEEE----EEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCE-----------
T ss_pred CCCCCeEEEEEECCCC-cEEE----eeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCce-----------
Confidence 4679999999985321 1111 1122477789999999999999998887 999999997 3321
Q ss_pred ceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEEC-
Q 005352 296 SCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASI- 373 (701)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~- 373 (701)
+.+..+..+. .+..++|+|++ +|++++.
T Consensus 75 -------------------------------------------------~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~ 104 (343)
T 1ri6_A 75 -------------------------------------------------TFAAESALPG-SLTHISTDHQGQFVFVGSYN 104 (343)
T ss_dssp -------------------------------------------------EEEEEEECSS-CCSEEEECTTSSEEEEEETT
T ss_pred -------------------------------------------------eeccccccCC-CCcEEEEcCCCCEEEEEecC
Confidence 1112223233 67899999999 6766654
Q ss_pred CCcEEEEEC---CCCeeeeeecCCCCeEEEEEeeCCCCEEEEEE-cCCcEEEEeCCC-CcEEE-----Ee-cCCCcEEEE
Q 005352 374 DKTVRLWRV---GNDHCLRVFPHSNYVTCVHFNPVDDNYFISGS-IDGKVRIWAVLS-CHVVD-----WV-DIRQIVTAV 442 (701)
Q Consensus 374 dg~I~iWd~---~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs-~dg~v~iwd~~~-~~~~~-----~~-~~~~~i~~i 442 (701)
++.|.+||+ ...+.+..+.....+.+++|+| +++++++++ .++.|++||+.+ ++... .. .....+..+
T Consensus 105 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (343)
T 1ri6_A 105 AGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISP-DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHM 183 (343)
T ss_dssp TTEEEEEEEETTEEEEEEEEECCCTTBCCCEECT-TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEE
T ss_pred CCeEEEEECCCCccccccccccCCCCceEEEECC-CCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceE
Confidence 889999999 4445566666666799999999 888888777 899999999987 65432 11 234578899
Q ss_pred EEeeCCCeEEEEe-cCCcEEEEECCC--CeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEE-EEECCCcEEEEeCCc
Q 005352 443 CYRPDGQGGIVGS-MMGDCRFYNVSD--NHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVM-VSCADSQVRILQGPN 518 (701)
Q Consensus 443 ~~sp~g~~l~~gs-~dg~v~i~d~~~--~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~-~~s~dg~I~iwd~~~ 518 (701)
+|+|+++++++++ .++.|.+|++.. +....................+..++|+| ++.+|+ +...++.|.+||+..
T Consensus 184 ~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~-dg~~l~v~~~~~~~i~v~d~~~ 262 (343)
T 1ri6_A 184 VFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITP-DGRHLYACDRTASLITVFSVSE 262 (343)
T ss_dssp EECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECT-TSSEEEEEETTTTEEEEEEECT
T ss_pred EECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECC-CCCEEEEEecCCCEEEEEEEcC
Confidence 9999999776655 789999999954 33322111111111112234677899999 566665 455799999999872
Q ss_pred --c-ceeeecccCCCCeEEEEEecCCCEEEEEe-CCCcEEEEeCC
Q 005352 519 --V-IGKYKGLRRSGNQLSACFTSDGKHIVSAG-EDSNVYMWNCI 559 (701)
Q Consensus 519 --~-~~~~~~~~~~~~v~~l~~s~dg~~l~sgs-~Dg~I~iWd~~ 559 (701)
. ............+..++|+|+|++|++++ .++.|.+|+++
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 263 DGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp TSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred CCCceEEeeeecCCCccceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 1 11222222233488999999999998887 68999999665
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.89 E-value=8.6e-21 Score=204.76 Aligned_cols=235 Identities=11% Similarity=0.048 Sum_probs=186.3
Q ss_pred ceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCC---cEEEEEeecCeeeeeecCCCCCCceeE
Q 005352 223 QRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDG---VVRLWQVVEDERLTEVDIPEIDPSCIY 299 (701)
Q Consensus 223 ~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg---~I~iWd~~~~~~~~~~~~~~~~~~~~~ 299 (701)
+.|++|+..... .+.+.+|.+.|.+++|+|||++||+++.|+ .|++||+.+++.
T Consensus 159 ~~i~i~d~~g~~--------~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~--------------- 215 (415)
T 2hqs_A 159 YELRVSDYDGYN--------QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV--------------- 215 (415)
T ss_dssp EEEEEEETTSCS--------CEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE---------------
T ss_pred ceEEEEcCCCCC--------CEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcE---------------
Confidence 799999975321 245777999999999999999999999885 999999987642
Q ss_pred EeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEE-EEECCCc-
Q 005352 300 FTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLL-SASIDKT- 376 (701)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~-s~s~dg~- 376 (701)
..+..|...+.+++|+|++ +|+ +++.++.
T Consensus 216 ------------------------------------------------~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~ 247 (415)
T 2hqs_A 216 ------------------------------------------------RQVASFPRHNGAPAFSPDGSKLAFALSKTGSL 247 (415)
T ss_dssp ------------------------------------------------EEEECCSSCEEEEEECTTSSEEEEEECTTSSC
T ss_pred ------------------------------------------------EEeecCCCcccCEEEcCCCCEEEEEEecCCCc
Confidence 1234577789999999999 666 6666655
Q ss_pred -EEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEc-CC--cEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEE
Q 005352 377 -VRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSI-DG--KVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGI 452 (701)
Q Consensus 377 -I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~-dg--~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~ 452 (701)
|++||+.+++......|...+.+++|+| ++++|++++. ++ .|.+||+.+++......+...+.+++|+|+|++|+
T Consensus 248 ~i~~~d~~~~~~~~l~~~~~~~~~~~~sp-dg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~ 326 (415)
T 2hqs_A 248 NLYVMDLASGQIRQVTDGRSNNTEPTWFP-DSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMV 326 (415)
T ss_dssp EEEEEETTTCCEEECCCCSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEE
T ss_pred eEEEEECCCCCEEeCcCCCCcccceEECC-CCCEEEEEECCCCCcEEEEEECCCCCEEEEecCCCcccCeEECCCCCEEE
Confidence 9999999988866666888999999999 9999988886 44 68888999887666666777899999999999999
Q ss_pred EEecC---CcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCC---cEEEEeCCccceeeecc
Q 005352 453 VGSMM---GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADS---QVRILQGPNVIGKYKGL 526 (701)
Q Consensus 453 ~gs~d---g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg---~I~iwd~~~~~~~~~~~ 526 (701)
+++.+ ..|.+||+.+++... + ..+ ..+.+++|+| ++..|++++.++ .|++||+.... .....
T Consensus 327 ~~~~~~g~~~i~~~d~~~~~~~~-----l----~~~-~~~~~~~~sp-dg~~l~~~s~~~~~~~l~~~d~~g~~-~~~l~ 394 (415)
T 2hqs_A 327 MVSSNGGQQHIAKQDLATGGVQV-----L----SST-FLDETPSLAP-NGTMVIYSSSQGMGSVLNLVSTDGRF-KARLP 394 (415)
T ss_dssp EEEECSSCEEEEEEETTTCCEEE-----C----CCS-SSCEEEEECT-TSSEEEEEEEETTEEEEEEEETTSCC-EEECC
T ss_pred EEECcCCceEEEEEECCCCCEEE-----e----cCC-CCcCCeEEcC-CCCEEEEEEcCCCccEEEEEECCCCc-EEEee
Confidence 88864 589999999876421 1 111 2789999999 788888888766 79999986432 33444
Q ss_pred cCCCCeEEEEEecCC
Q 005352 527 RRSGNQLSACFTSDG 541 (701)
Q Consensus 527 ~~~~~v~~l~~s~dg 541 (701)
.+.+.|.+++|+|.-
T Consensus 395 ~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 395 ATDGQVKFPAWSPYL 409 (415)
T ss_dssp CSSSEEEEEEECCCC
T ss_pred CCCCCCcCCcccccc
Confidence 578899999999964
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.5e-20 Score=207.69 Aligned_cols=328 Identities=11% Similarity=0.054 Sum_probs=224.8
Q ss_pred EEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcC
Q 005352 257 KFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFP 336 (701)
Q Consensus 257 ~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (701)
.|+|++.++++++.|++|.+||..+++.+.
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~-------------------------------------------------- 173 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVK-------------------------------------------------- 173 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEE--------------------------------------------------
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEE--------------------------------------------------
Confidence 378999999999999999999998875433
Q ss_pred CccccccCCCeEEEc-CCccCeEEEEEecCC-eEEEEECCCcEEEEEC--CCCeeeeeecCCCCeEEEEEeeC---CCCE
Q 005352 337 PKVFRILEKPLHEFH-GHSGEILDLSWSKNN-YLLSASIDKTVRLWRV--GNDHCLRVFPHSNYVTCVHFNPV---DDNY 409 (701)
Q Consensus 337 ~~~~~~~~~~~~~~~-~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~--~~~~~~~~~~h~~~V~~l~f~p~---~~~~ 409 (701)
.+. +|. +..++|+|++ +|++++.|++|++||+ .+++++..+.+...+..++|+|. ++++
T Consensus 174 ------------~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp~~~~dg~~ 239 (543)
T 1nir_A 174 ------------VIDTGYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRY 239 (543)
T ss_dssp ------------EEECSTT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTE
T ss_pred ------------EEecCcc--cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCcceEEeCCCcCCCCCE
Confidence 233 333 7899999999 9999999999999999 89999999988888999999982 5677
Q ss_pred EEEEE-cCCcEEEEeCCCCcEEEEecC------------CCcEEEEEEeeCCCeE-EEEecCCcEEEEECCCCeeeeeee
Q 005352 410 FISGS-IDGKVRIWAVLSCHVVDWVDI------------RQIVTAVCYRPDGQGG-IVGSMMGDCRFYNVSDNHLELDAE 475 (701)
Q Consensus 410 l~sgs-~dg~v~iwd~~~~~~~~~~~~------------~~~i~~i~~sp~g~~l-~~gs~dg~v~i~d~~~~~~~~~~~ 475 (701)
+++++ .+++|.+||..+.+++..+.. ...+..+.++|++..+ ++...++.|.+||+.+.+......
T Consensus 240 l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~ 319 (543)
T 1nir_A 240 TIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTS 319 (543)
T ss_dssp EEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEE
T ss_pred EEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEE
Confidence 77776 589999999999988765542 2268899999977654 556678999999998765332111
Q ss_pred EEeecccCCCCCCeeEEEEecCCCCEEEEE-ECCCcEEEEeCCccceeeecc----cCCCCeEEEEEecC-CCEEEEEe-
Q 005352 476 ICVHSKKKAPCKRITGFQFLPQDSSKVMVS-CADSQVRILQGPNVIGKYKGL----RRSGNQLSACFTSD-GKHIVSAG- 548 (701)
Q Consensus 476 ~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~-s~dg~I~iwd~~~~~~~~~~~----~~~~~v~~l~~s~d-g~~l~sgs- 548 (701)
+. +...+.++.|+| ++++++++ ..+++|.+||..+........ .|.+....+ ++|+ +.+++++.
T Consensus 320 i~-------~~~~~~~~~~sp-dg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~ 390 (543)
T 1nir_A 320 IG-------AAPFLHDGGWDS-SHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHL 390 (543)
T ss_dssp EE-------CCSSCCCEEECT-TSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBS
T ss_pred ec-------cCcCccCceECC-CCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccC
Confidence 11 234577899999 66766555 458999999998654433222 144333333 5787 66677775
Q ss_pred CCCcEEEEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccc
Q 005352 549 EDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVF 628 (701)
Q Consensus 549 ~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~ 628 (701)
.|++|.+|++.+...+. ...+.++.+.. .......+.++|+ +..+++
T Consensus 391 ~d~~V~v~d~~~~~~~~-~~~~~v~~l~~----------------------------~g~~~~~v~~~pd----g~~l~v 437 (543)
T 1nir_A 391 GDGSISLIGTDPKNHPQ-YAWKKVAELQG----------------------------QGGGSLFIKTHPK----SSHLYV 437 (543)
T ss_dssp SSSEEEEEECCTTTCTT-TBTSEEEEEEC----------------------------SCSCCCCEECCTT----CCEEEE
T ss_pred CCceEEEEEeCCCCCch-hcCeEEEEEEc----------------------------CCCCceEEEcCCC----CCcEEE
Confidence 68999999998743210 00111111110 1122344667887 556665
Q ss_pred cC-------CCCcccCCCCccCCCC-ccccccccchhhhhhhhhcccccccccCCCccEEEEec-----CCCeEeEEee
Q 005352 629 ES-------FPKGCATWPEEKLPAL-SQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAG-----WDGRIRSFLN 694 (701)
Q Consensus 629 ~s-------~d~~~~~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivTgg-----~DG~Irvw~~ 694 (701)
++ .++.|++|+..++... ..++... ..+... ....+..+.++++ |+.|..+. .|+.|.||+.
T Consensus 438 ~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~--~~~~~~-~~~~~~~~~~~~~-g~~~~~s~~~~~~~~~~i~v~D~ 512 (543)
T 1nir_A 438 DTTFNPDARISQSVAVFDLKNLDAKYQVLPIAE--WADLGE-GAKRVVQPEYNKR-GDEVWFSVWNGKNDSSALVVVDD 512 (543)
T ss_dssp CCTTCSSHHHHTCEEEEETTCTTSCCEEECHHH--HHCCCS-SCCEEEEEEECSS-SSEEEEEEECCTTSCCEEEEEET
T ss_pred ecCCCCCcccCceEEEEECCCCCCCeEEeechh--hcccCC-CCCceEeccCCCC-CCEEEEEeecCCCCCCeEEEEEC
Confidence 54 2678999999988865 2221110 000000 0135667789999 87777663 3799999984
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.9e-21 Score=223.64 Aligned_cols=261 Identities=11% Similarity=0.095 Sum_probs=181.9
Q ss_pred CCcEEEEEEccCCCEEEEEeC-CC-----cEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEE
Q 005352 250 DGSILTMKFSPDGQYLASAGD-DG-----VVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (701)
Q Consensus 250 ~~~I~~l~fspdg~~Lasgs~-Dg-----~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (701)
...|.+++|||||++|++++. |+ .|++||+.+++....+......+....+.
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~---------------------- 93 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLS---------------------- 93 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC-----------------------------
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhccccccccc----------------------
Confidence 456999999999999999998 88 89999998876544332221110000000
Q ss_pred eeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCC---eeeeeecCCCCeEE
Q 005352 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGND---HCLRVFPHSNYVTC 399 (701)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~---~~~~~~~h~~~V~~ 399 (701)
...... .....+. ....|.+++|+|+| +|++++. +.|++||+.++ +......+...+.+
T Consensus 94 -----------~~~~~~----~~~~~~~-~~~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~ 156 (741)
T 2ecf_A 94 -----------DEEKAR----RERQRIA-AMTGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATD 156 (741)
T ss_dssp -----------------------------CCEESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEE
T ss_pred -----------chhhhh----hhhhhhc-cccCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCccccc
Confidence 000000 0000111 12357889999999 7888776 99999999988 66555567788999
Q ss_pred EEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCc-----------------EEEEEEeeCCCeEEEEecCC----
Q 005352 400 VHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQI-----------------VTAVCYRPDGQGGIVGSMMG---- 458 (701)
Q Consensus 400 l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~-----------------i~~i~~sp~g~~l~~gs~dg---- 458 (701)
++|+| ++++|++++ ++.|++||+.+++.......... +..++|+|||+.|++++.++
T Consensus 157 ~~~SP-DG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~ 234 (741)
T 2ecf_A 157 AKLSP-KGGFVSFIR-GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVP 234 (741)
T ss_dssp EEECT-TSSEEEEEE-TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSC
T ss_pred ccCCC-CCCEEEEEe-CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCc
Confidence 99999 999999887 56999999999877655433221 47899999999999988765
Q ss_pred -----------------------------cEEEEECCC-CeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEEC-
Q 005352 459 -----------------------------DCRFYNVSD-NHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCA- 507 (701)
Q Consensus 459 -----------------------------~v~i~d~~~-~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~- 507 (701)
.|.+||+.+ ++.... . ....+...+..++| | +++.|++++.
T Consensus 235 ~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~-----~-~~~~~~~~~~~~~~-p-Dg~~l~~~~~~ 306 (741)
T 2ecf_A 235 VQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWI-----D-LGKEQDIYLARVNW-R-DPQHLSFQRQS 306 (741)
T ss_dssp EEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEE-----C-CCSCSSEEEEEEEE-E-ETTEEEEEEEE
T ss_pred eEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEe-----c-CCCCcceEEEEEEe-C-CCCEEEEEEec
Confidence 788899887 653211 0 01134567899999 9 6777776654
Q ss_pred ----CCcEEEEeCCccceeeecccCCC----CeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 005352 508 ----DSQVRILQGPNVIGKYKGLRRSG----NQLSACFTSDGKHIVSAGEDSNVYMWNCI 559 (701)
Q Consensus 508 ----dg~I~iwd~~~~~~~~~~~~~~~----~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~ 559 (701)
+..|++||..+.........+.. .+..++|+|||+++++++.||.+.||.++
T Consensus 307 ~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~ 366 (741)
T 2ecf_A 307 RDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRID 366 (741)
T ss_dssp TTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEEC
T ss_pred ccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEc
Confidence 56799999876543332222222 44688999999999999999988888765
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-19 Score=218.54 Aligned_cols=320 Identities=10% Similarity=0.035 Sum_probs=215.6
Q ss_pred eeeecCcccccccccc------ceEEEEEccCccchhhhcccCceeccCCCcE-------EEEEEccCCCEEEEEeCC--
Q 005352 207 ERVRLNEEDAMFCSKV------QRVKVYHCKKRSKELSALYKGQEIQAHDGSI-------LTMKFSPDGQYLASAGDD-- 271 (701)
Q Consensus 207 ~~~~~~~~~~~~~~~d------~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I-------~~l~fspdg~~Lasgs~D-- 271 (701)
.++++++..+++++.+ ..|.+|+..... .+.+..|...+ ..++|+|||+++++++.+
T Consensus 58 ~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~--------~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~ 129 (1045)
T 1k32_A 58 ARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE--------IKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQP 129 (1045)
T ss_dssp EEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE--------EEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSS
T ss_pred eEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC--------eEEcccCCCcccccccccccccCCCCCEEEEEECCcCC
Confidence 3566677778876543 478888765421 13566788888 999999999988888755
Q ss_pred ----CcEEEEEeecCeeeeeecCCCCCCceeEEee---------------------------------------ccCCCc
Q 005352 272 ----GVVRLWQVVEDERLTEVDIPEIDPSCIYFTV---------------------------------------NHLSEL 308 (701)
Q Consensus 272 ----g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------~~~~~~ 308 (701)
..|.+|++.+++...... . ....+.+.+ .+...+
T Consensus 130 ~~~~~~l~~~~~~~g~~~~l~~-~--~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v 206 (1045)
T 1k32_A 130 FSSMTCLYRVENDGINFVPLNL-G--PATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHV 206 (1045)
T ss_dssp STTCCEEEEEEGGGTEEEECCS-C--SCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCC
T ss_pred CcccceEEEEECCCCCeEEecC-C--CcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcc
Confidence 357777776665332111 1 111111111 000001
Q ss_pred ceeeeccccceeeEEeeecCCccEEEcCCccccc--cCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCC
Q 005352 309 KPLFMDKEKISILKSLRRTSESACVVFPPKVFRI--LEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGND 385 (701)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~ 385 (701)
....+.+. .++..... +.. ..+|.+ .......+..|. .+..++|+|+| .|+.+ .++.|.+||+...
T Consensus 207 ~~~~~s~d--~l~~~~~~--dg~-----~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~ 275 (1045)
T 1k32_A 207 SSPVIVGH--RIYFITDI--DGF-----GQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPDTE 275 (1045)
T ss_dssp EEEEEETT--EEEEEECT--TSS-----CEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTTTC
T ss_pred cceEEeCC--EEEEEEec--cCc-----eEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecCCce
Confidence 11111111 00000000 000 012221 123445555554 46678999999 67766 5899999999544
Q ss_pred eeeeeec------------CCCCeEEEEEe-eCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCC-cEEEEEEeeCCCeE
Q 005352 386 HCLRVFP------------HSNYVTCVHFN-PVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQ-IVTAVCYRPDGQGG 451 (701)
Q Consensus 386 ~~~~~~~------------h~~~V~~l~f~-p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~-~i~~i~~sp~g~~l 451 (701)
... .+. |...+.+++|+ | ++++|++++ ++.|.+|++.+++......+.. .+..++|+ +|+.|
T Consensus 276 ~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~p-dG~~la~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l 351 (1045)
T 1k32_A 276 KIE-KIEIGDLESPEDRIISIPSKFAEDFSPL-DGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAF 351 (1045)
T ss_dssp CEE-ECCCCCCCBCCSEEEECGGGGEEEEEEC-GGGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEE
T ss_pred Eee-eeccCcccccccccccccccceeeecCC-CCCEEEEEE-cCEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeE
Confidence 433 433 23368999999 9 999888887 8899999999888777666777 89999999 99999
Q ss_pred EEEecCCcEE-EEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCC
Q 005352 452 IVGSMMGDCR-FYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSG 530 (701)
Q Consensus 452 ~~gs~dg~v~-i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~ 530 (701)
+.++.++.+. +|++.++.... ...+...+..++|+| +++.|++++.++.|++||+.+.........|..
T Consensus 352 ~~~s~~~~l~~~~d~~~~~~~~---------l~~~~~~~~~~~~Sp-DG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~ 421 (1045)
T 1k32_A 352 IHGTREGDFLGIYDYRTGKAEK---------FEENLGNVFAMGVDR-NGKFAVVANDRFEIMTVDLETGKPTVIERSREA 421 (1045)
T ss_dssp EEEETTEEEEEEEETTTCCEEE---------CCCCCCSEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECSSS
T ss_pred EEEECCCceEEEEECCCCCceE---------ecCCccceeeeEECC-CCCEEEEECCCCeEEEEECCCCceEEeccCCCC
Confidence 9998888888 89998765321 113456789999999 789999999999999999986554444335778
Q ss_pred CeEEEEEecCCCEEEEEeCCC----------cEEEEeCCCCC
Q 005352 531 NQLSACFTSDGKHIVSAGEDS----------NVYMWNCIGHE 562 (701)
Q Consensus 531 ~v~~l~~s~dg~~l~sgs~Dg----------~I~iWd~~~~~ 562 (701)
.+.+++|+|||++|++++.++ .|++||+.+++
T Consensus 422 ~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~ 463 (1045)
T 1k32_A 422 MITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK 463 (1045)
T ss_dssp CCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE
T ss_pred CccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc
Confidence 889999999999999887654 89999998765
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.8e-20 Score=189.40 Aligned_cols=251 Identities=14% Similarity=0.105 Sum_probs=183.9
Q ss_pred ccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeec-CeeeeeecCCCCCCce
Q 005352 219 CSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVE-DERLTEVDIPEIDPSC 297 (701)
Q Consensus 219 ~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~-~~~~~~~~~~~~~~~~ 297 (701)
.+.++.|++|+...... ..+..|.+.|.+++|+|+|++|++++ ++.|.+||+.+ ++...
T Consensus 18 ~~~~~~i~~~d~~~~~~--------~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~----------- 77 (297)
T 2ojh_A 18 GSMRSSIEIFNIRTRKM--------RVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEK----------- 77 (297)
T ss_dssp CCCCEEEEEEETTTTEE--------EEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEE-----------
T ss_pred CCcceeEEEEeCCCCce--------eeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceE-----------
Confidence 45789999999754321 23456899999999999999999987 78999999987 54211
Q ss_pred eEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCC-ccCeEEEEEecCC-eEEEEE--C
Q 005352 298 IYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGH-SGEILDLSWSKNN-YLLSAS--I 373 (701)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~I~~l~~s~~~-~l~s~s--~ 373 (701)
.+.+| ...|.+++|+|++ +|++++ .
T Consensus 78 ---------------------------------------------------~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 106 (297)
T 2ojh_A 78 ---------------------------------------------------VDTGFATICNNDHGISPDGALYAISDKVE 106 (297)
T ss_dssp ---------------------------------------------------CCCTTCCCBCSCCEECTTSSEEEEEECTT
T ss_pred ---------------------------------------------------eccccccccccceEECCCCCEEEEEEeCC
Confidence 11223 3578889999999 888888 3
Q ss_pred CCcEEEE--ECCCCeeeeeecCCCCeEEEEEeeCCCCEEE-EEEcCCcEEEEeC--CCCcEEEEecCCCcEEEEEEeeCC
Q 005352 374 DKTVRLW--RVGNDHCLRVFPHSNYVTCVHFNPVDDNYFI-SGSIDGKVRIWAV--LSCHVVDWVDIRQIVTAVCYRPDG 448 (701)
Q Consensus 374 dg~I~iW--d~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~-sgs~dg~v~iwd~--~~~~~~~~~~~~~~i~~i~~sp~g 448 (701)
++.+.|| ++.+++ ...+.+...+.+++|+| ++++|+ ++..++.++||++ .+++......+...+.+++|+|++
T Consensus 107 ~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg 184 (297)
T 2ojh_A 107 FGKSAIYLLPSTGGT-PRLMTKNLPSYWHGWSP-DGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDG 184 (297)
T ss_dssp TSSCEEEEEETTCCC-CEECCSSSSEEEEEECT-TSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTS
T ss_pred CCcceEEEEECCCCc-eEEeecCCCccceEECC-CCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCC
Confidence 3455555 445554 34455455699999999 888776 7888999999984 556666667778889999999999
Q ss_pred CeEEEEe-cCCcEEEEECCC-CeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECC-----------CcEEEEe
Q 005352 449 QGGIVGS-MMGDCRFYNVSD-NHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD-----------SQVRILQ 515 (701)
Q Consensus 449 ~~l~~gs-~dg~v~i~d~~~-~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~d-----------g~I~iwd 515 (701)
+.|++++ .++.+++|++.. ..... ....+...+..+.|+| ++.+|++++.+ +.|++||
T Consensus 185 ~~l~~~~~~~~~~~i~~~~~~~~~~~--------~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~l~~~d 255 (297)
T 2ojh_A 185 RWIYFNSSRTGQMQIWRVRVDGSSVE--------RITDSAYGDWFPHPSP-SGDKVVFVSYDADVFDHPRDLDVRVQLMD 255 (297)
T ss_dssp SEEEEEECTTSSCEEEEEETTSSCEE--------ECCCCSEEEEEEEECT-TSSEEEEEEEETTCCSCCSSEEEEEEEEE
T ss_pred CEEEEEecCCCCccEEEECCCCCCcE--------EEecCCcccCCeEECC-CCCEEEEEEcCCCCCcccccCceEEEEEe
Confidence 9888766 588999998862 22111 1122345688899999 67888777765 5699999
Q ss_pred CCccce--eeecccCCCCeEEEEEecCCCEEEEEeCCC
Q 005352 516 GPNVIG--KYKGLRRSGNQLSACFTSDGKHIVSAGEDS 551 (701)
Q Consensus 516 ~~~~~~--~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg 551 (701)
+.+... ......|...+..++|+|+|++|++++.+.
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 256 MDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp TTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred cCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 875433 333335778899999999999998887653
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.6e-19 Score=189.69 Aligned_cols=272 Identities=11% Similarity=0.106 Sum_probs=184.0
Q ss_pred ccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeC---CCcEEEEEeecCeeeeeecCCCCCCce
Q 005352 221 KVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGD---DGVVRLWQVVEDERLTEVDIPEIDPSC 297 (701)
Q Consensus 221 ~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~---Dg~I~iWd~~~~~~~~~~~~~~~~~~~ 297 (701)
.++.|.+|.++.....+... ....+...+..++|+|+|+ |++++. ++.|.+|++.+++.
T Consensus 14 ~~~~i~v~~~d~~tg~~~~~----~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~------------- 75 (347)
T 3hfq_A 14 TSQGIYQGTLDTTAKTLTND----GLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTA------------- 75 (347)
T ss_dssp SCCEEEEEEEETTTTEEEEE----EEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEE-------------
T ss_pred CCCCEEEEEEcCCCCeEEEe----eeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcE-------------
Confidence 46678999887543333221 1234556778899999999 555544 68999999976542
Q ss_pred eEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEE-CCC
Q 005352 298 IYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSAS-IDK 375 (701)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s-~dg 375 (701)
+.+..+..+...+..++|+|++ +|++++ .++
T Consensus 76 -----------------------------------------------~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~ 108 (347)
T 3hfq_A 76 -----------------------------------------------HKLNTVVAPGTPPAYVAVDEARQLVYSANYHKG 108 (347)
T ss_dssp -----------------------------------------------EEEEEEEEESCCCSEEEEETTTTEEEEEETTTT
T ss_pred -----------------------------------------------EEeeeeecCCCCCEEEEECCCCCEEEEEeCCCC
Confidence 1122233456678899999999 788777 689
Q ss_pred cEEEEECCC-C--eeeeeecCC----------CCeEEEEEeeCCCCEEEEEEcCCcEEEEeCC-CCcEEEE----ecCCC
Q 005352 376 TVRLWRVGN-D--HCLRVFPHS----------NYVTCVHFNPVDDNYFISGSIDGKVRIWAVL-SCHVVDW----VDIRQ 437 (701)
Q Consensus 376 ~I~iWd~~~-~--~~~~~~~h~----------~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~-~~~~~~~----~~~~~ 437 (701)
.|.+|++.. + ..+..+.+. ..+.+++|+| +++++++...++.|++|++. +++.... .....
T Consensus 109 ~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~sp-dg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~ 187 (347)
T 3hfq_A 109 TAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTP-DNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGF 187 (347)
T ss_dssp EEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECT-TSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTC
T ss_pred EEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECC-CCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCC
Confidence 999999963 2 333333322 2488999999 88866666678899999998 5544322 12234
Q ss_pred cEEEEEEeeCCCeEEE-EecCCcEEEEECCC--CeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEE-EEEECCCcEEE
Q 005352 438 IVTAVCYRPDGQGGIV-GSMMGDCRFYNVSD--NHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKV-MVSCADSQVRI 513 (701)
Q Consensus 438 ~i~~i~~sp~g~~l~~-gs~dg~v~i~d~~~--~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l-~~~s~dg~I~i 513 (701)
.+..++|+|+|+++++ +..++.+.+|++.. +.+.....+............+..++|+| ++++| ++...++.|.+
T Consensus 188 ~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~sp-dG~~l~v~~~~~~~v~v 266 (347)
T 3hfq_A 188 GPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSH-DGHFLYVSNRGYNTLAV 266 (347)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECT-TSCEEEEEEETTTEEEE
T ss_pred CCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECC-CCCEEEEEeCCCCEEEE
Confidence 6788999999997666 46688999999874 44332222211111111224588999999 56655 55667999999
Q ss_pred EeCCc---cceeeecccCCCCeEEEEEecCCCEEEEEeCC-CcEEEEeCC
Q 005352 514 LQGPN---VIGKYKGLRRSGNQLSACFTSDGKHIVSAGED-SNVYMWNCI 559 (701)
Q Consensus 514 wd~~~---~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~D-g~I~iWd~~ 559 (701)
|++.. .........+...+..++|+|+|++|++++.+ +.|.+|+++
T Consensus 267 ~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 267 FAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp EEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred EEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 99862 12222222245568899999999999888765 899999554
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.8e-19 Score=185.26 Aligned_cols=270 Identities=9% Similarity=0.086 Sum_probs=187.5
Q ss_pred cccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeC-CCcEEEEEeecCeeeeeecCCCCC
Q 005352 216 AMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGD-DGVVRLWQVVEDERLTEVDIPEID 294 (701)
Q Consensus 216 ~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~-Dg~I~iWd~~~~~~~~~~~~~~~~ 294 (701)
+++...++.|.+|+....... ..+..+...+ +++|+|+|++|++++. ++.|.+||+.+++..
T Consensus 13 ~v~~~~~~~v~~~d~~~~~~~-------~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~--------- 75 (331)
T 3u4y_A 13 IVVEQHLRRISFFSTDTLEIL-------NQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPK--------- 75 (331)
T ss_dssp EEEEGGGTEEEEEETTTCCEE-------EEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCE---------
T ss_pred EEEecCCCeEEEEeCccccee-------eeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCcee---------
Confidence 455778899999997543221 1233455667 9999999997776666 899999999876420
Q ss_pred CceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEEC
Q 005352 295 PSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASI 373 (701)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~ 373 (701)
...+..+.....+++|+|++ +|+++..
T Consensus 76 ----------------------------------------------------~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 103 (331)
T 3u4y_A 76 ----------------------------------------------------VVAIQEGQSSMADVDITPDDQFAVTVTG 103 (331)
T ss_dssp ----------------------------------------------------EEEEEECSSCCCCEEECTTSSEEEECCC
T ss_pred ----------------------------------------------------EEecccCCCCccceEECCCCCEEEEecC
Confidence 22233344555558999999 7775444
Q ss_pred CC---cEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEE-EEEEcCCc-EEEEeCCCCcEE-----EEecCCCcEEEEE
Q 005352 374 DK---TVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYF-ISGSIDGK-VRIWAVLSCHVV-----DWVDIRQIVTAVC 443 (701)
Q Consensus 374 dg---~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l-~sgs~dg~-v~iwd~~~~~~~-----~~~~~~~~i~~i~ 443 (701)
++ .|.+||+.+++.+..+.....+.+++|+| +++++ ++...++. |.+|++.....+ ........+..++
T Consensus 104 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 182 (331)
T 3u4y_A 104 LNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISP-NGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNIT 182 (331)
T ss_dssp SSSSCEEEEEETTTTEEEEEEECCTTEEEEEECT-TSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEE
T ss_pred CCCcccEEEEECCCCCeEEEEECCCCccceEECC-CCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceE
Confidence 42 89999999999999888777889999999 87744 55556688 999998754322 2334456689999
Q ss_pred EeeCCCeEEEEe-cCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEE-CCCcEEEEeCCccce
Q 005352 444 YRPDGQGGIVGS-MMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSC-ADSQVRILQGPNVIG 521 (701)
Q Consensus 444 ~sp~g~~l~~gs-~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s-~dg~I~iwd~~~~~~ 521 (701)
|+|+|+++++++ .++.|.+||+.+++...... .+. ....+..++|+| ++++++++. .++.|.+||..+...
T Consensus 183 ~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~-~~~-----~~~~~~~~~~sp-dg~~l~v~~~~~~~i~~~d~~~~~~ 255 (331)
T 3u4y_A 183 FTPDGNFAFVANLIGNSIGILETQNPENITLLN-AVG-----TNNLPGTIVVSR-DGSTVYVLTESTVDVFNFNQLSGTL 255 (331)
T ss_dssp ECTTSSEEEEEETTTTEEEEEECSSTTSCEEEE-EEE-----CSSCCCCEEECT-TSSEEEEECSSEEEEEEEETTTTEE
T ss_pred ECCCCCEEEEEeCCCCeEEEEECCCCcccceee-ecc-----CCCCCceEEECC-CCCEEEEEEcCCCEEEEEECCCCce
Confidence 999999766554 68899999998776511000 111 125567899999 677665554 578899999875443
Q ss_pred ee----ecc-----cCCCCeEEEEEecCCCEEEEEe-CCCcEEEEeCCCCC
Q 005352 522 KY----KGL-----RRSGNQLSACFTSDGKHIVSAG-EDSNVYMWNCIGHE 562 (701)
Q Consensus 522 ~~----~~~-----~~~~~v~~l~~s~dg~~l~sgs-~Dg~I~iWd~~~~~ 562 (701)
.. ... ........++|+|+|++|++++ .++.|.+|++.+..
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 256 SFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKV 306 (331)
T ss_dssp EEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred eeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence 11 110 0111225689999999886665 45699999998654
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-19 Score=189.06 Aligned_cols=270 Identities=11% Similarity=0.081 Sum_probs=194.6
Q ss_pred ccccccccceEEEEEccCccchhhhcccCceec-cCCC-cEEEEEEccCCCEE-EEEeCCCcEEEEEeecCeeeeeecCC
Q 005352 215 DAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQ-AHDG-SILTMKFSPDGQYL-ASAGDDGVVRLWQVVEDERLTEVDIP 291 (701)
Q Consensus 215 ~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~-~H~~-~I~~l~fspdg~~L-asgs~Dg~I~iWd~~~~~~~~~~~~~ 291 (701)
.+++++.++.|.+||...... . +.+. ++.. .+..++|+|+|++| +++..++.|.+||+.+++.+..+...
T Consensus 3 ~~v~~~~~~~v~~~d~~~~~~-~------~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~ 75 (337)
T 1pby_B 3 YILAPARPDKLVVIDTEKMAV-D------KVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLS 75 (337)
T ss_dssp EEEEEETTTEEEEEETTTTEE-E------EEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECC
T ss_pred EEEEcCCCCeEEEEECCCCcE-E------EEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcC
Confidence 466788899999999754321 1 1122 2222 47889999999876 55566889999999887644333211
Q ss_pred CCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEE
Q 005352 292 EIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLS 370 (701)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s 370 (701)
.. ..|...+..++|+|++ +|++
T Consensus 76 ~~---------------------------------------------------------~~~~~~~~~~~~s~dg~~l~~ 98 (337)
T 1pby_B 76 TP---------------------------------------------------------EERVKSLFGAALSPDGKTLAI 98 (337)
T ss_dssp BT---------------------------------------------------------TEEEECTTCEEECTTSSEEEE
T ss_pred Cc---------------------------------------------------------ccccccccceEECCCCCEEEE
Confidence 00 0022346678999999 7777
Q ss_pred EE------------CCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCc
Q 005352 371 AS------------IDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQI 438 (701)
Q Consensus 371 ~s------------~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~ 438 (701)
++ .++.|.+||+.+++.+..+.....+.+++|+| ++++|+++ ++.|.+||+.+++..........
T Consensus 99 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~ 175 (337)
T 1pby_B 99 YESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWAR-DGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSW 175 (337)
T ss_dssp EEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECT-TSSCEEEE--SSSEEEEETTTTEEEEEECSTTT
T ss_pred EecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECC-CCCEEEEe--CCeEEEEECCCCcEeeeeecccc
Confidence 75 57999999999999888887777789999999 88877777 68999999999988765543331
Q ss_pred EEEEEEeeCCCeEEEEecCC------------------------cEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEE
Q 005352 439 VTAVCYRPDGQGGIVGSMMG------------------------DCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQF 494 (701)
Q Consensus 439 i~~i~~sp~g~~l~~gs~dg------------------------~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 494 (701)
...+.|+|+++.+++.+..+ .|.+||+.+++.. .... . .+...+.+++|
T Consensus 176 ~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~--~----~~~~~~~~~~~ 248 (337)
T 1pby_B 176 EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREV--R----IMDVFYFSTAV 248 (337)
T ss_dssp TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEE--E----ECSSCEEEEEE
T ss_pred CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-Eeec--C----CCCCceeeEEE
Confidence 12347899998776654332 4689999987754 2211 1 12356788999
Q ss_pred ecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 495 LPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 495 ~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
+| ++.+++++ ++.|++||+.+........ ....+.+++|+|+|++|++++.++.|++||+.+++
T Consensus 249 s~-dg~~l~~~--~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~ 312 (337)
T 1pby_B 249 NP-AKTRAFGA--YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLE 312 (337)
T ss_dssp CT-TSSEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCC
T ss_pred CC-CCCEEEEe--CCeEEEEECCCCcCcceec-CCCceeeEEECCCCCEEEEEcCCCcEEEEECcCCc
Confidence 99 67777777 7999999998654333222 33567899999999999999999999999998876
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.84 E-value=1e-19 Score=211.62 Aligned_cols=280 Identities=13% Similarity=0.075 Sum_probs=197.3
Q ss_pred eeeecCccccccccc-cc-----eEEEEEccCccchhhhcccCceeccCC----------------------CcEEEEEE
Q 005352 207 ERVRLNEEDAMFCSK-VQ-----RVKVYHCKKRSKELSALYKGQEIQAHD----------------------GSILTMKF 258 (701)
Q Consensus 207 ~~~~~~~~~~~~~~~-d~-----~v~vw~~~~~~~~~~~~~~~~~l~~H~----------------------~~I~~l~f 258 (701)
..++++++.+++++. ++ .|++|+....... .+.. ...+. ..|.+++|
T Consensus 42 ~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 116 (741)
T 2ecf_A 42 PKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTR--LLVD---SKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQW 116 (741)
T ss_dssp EEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEE--EEEC---GGGTC--------------------CCEESCCCEE
T ss_pred ceEecCCCEEEEEeccCCCCcccEEEEEECCCCcee--Eccc---hhhcccccccccchhhhhhhhhhhccccCcceeEE
Confidence 456677778888877 77 8999997654321 1110 01111 34789999
Q ss_pred ccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCc
Q 005352 259 SPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPK 338 (701)
Q Consensus 259 spdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (701)
||||++|++++. +.|.+||+.++..
T Consensus 117 SpDg~~l~~~~~-~~i~~~d~~~~~~------------------------------------------------------ 141 (741)
T 2ecf_A 117 SPDAQRLLFPLG-GELYLYDLKQEGK------------------------------------------------------ 141 (741)
T ss_dssp CTTSSEEEEEET-TEEEEEESSSCST------------------------------------------------------
T ss_pred CCCCCEEEEEeC-CcEEEEECCCCCc------------------------------------------------------
Confidence 999999999987 8999999977510
Q ss_pred cccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeecC-CCC----------------eEEE
Q 005352 339 VFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPH-SNY----------------VTCV 400 (701)
Q Consensus 339 ~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~h-~~~----------------V~~l 400 (701)
.....+..|...+..++|+|+| +|+.++ ++.|++||+.+++....... ... +..+
T Consensus 142 ------~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~ 214 (741)
T 2ecf_A 142 ------AAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGY 214 (741)
T ss_dssp ------TSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSE
T ss_pred ------ceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccce
Confidence 0111234566789999999999 777776 56999999999887765542 221 4789
Q ss_pred EEeeCCCCEEEEEEcCC---------------------------------cEEEEeCCC-CcEEEEe---cCCCcEEEEE
Q 005352 401 HFNPVDDNYFISGSIDG---------------------------------KVRIWAVLS-CHVVDWV---DIRQIVTAVC 443 (701)
Q Consensus 401 ~f~p~~~~~l~sgs~dg---------------------------------~v~iwd~~~-~~~~~~~---~~~~~i~~i~ 443 (701)
+|+| ++++|++++.|+ .|++||+.+ ++..... .+...+..++
T Consensus 215 ~~Sp-Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 293 (741)
T 2ecf_A 215 WWAP-DDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVN 293 (741)
T ss_dssp EECT-TSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEE
T ss_pred EECC-CCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEE
Confidence 9999 999999988765 789999988 7765443 3567899999
Q ss_pred EeeCCCeEEEEec-----CCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCc
Q 005352 444 YRPDGQGGIVGSM-----MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN 518 (701)
Q Consensus 444 ~sp~g~~l~~gs~-----dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~ 518 (701)
| |||+.|++++. +..|++||+.+++........ .......+..++|+| +++++++++.++.++||....
T Consensus 294 ~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~----~~~~~~~~~~~~~sp-dg~~~~~~~~~g~~~l~~~~~ 367 (741)
T 2ecf_A 294 W-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHET----SPTWVPLHNSLRFLD-DGSILWSSERTGFQHLYRIDS 367 (741)
T ss_dssp E-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEE----CSSCCCCCSCCEECT-TSCEEEEECTTSSCEEEEECS
T ss_pred e-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcC----CCCcCCcCCceEECC-CCeEEEEecCCCccEEEEEcC
Confidence 9 99999998764 567999999987654322111 111111356789999 567888888899888876541
Q ss_pred cceeeecccCCCCeEEE-EEecCCCEEEE-EeCCC--cEEEEeCCC
Q 005352 519 VIGKYKGLRRSGNQLSA-CFTSDGKHIVS-AGEDS--NVYMWNCIG 560 (701)
Q Consensus 519 ~~~~~~~~~~~~~v~~l-~~s~dg~~l~s-gs~Dg--~I~iWd~~~ 560 (701)
.........+...+..+ .|+|+|++|+. ++.++ .++||++..
T Consensus 368 ~~~~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 368 KGKAAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL 413 (741)
T ss_dssp SSCEEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred CCCeeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence 11133333466778777 59999997754 55555 899999864
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.1e-18 Score=181.81 Aligned_cols=202 Identities=13% Similarity=0.157 Sum_probs=149.0
Q ss_pred CccCeEEEEEecCC-eEEEEEC-CCcEEEEECCCCee-eeeec-CCCCeEEEEEeeCCCCEEEEEEcCC---cEEEEeCC
Q 005352 353 HSGEILDLSWSKNN-YLLSASI-DKTVRLWRVGNDHC-LRVFP-HSNYVTCVHFNPVDDNYFISGSIDG---KVRIWAVL 425 (701)
Q Consensus 353 h~~~I~~l~~s~~~-~l~s~s~-dg~I~iWd~~~~~~-~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg---~v~iwd~~ 425 (701)
+...+ .++|+|++ ++++++. ++.|.+||+.+++. ...+. +..+..+++|+| ++++++++..++ .|.+||+.
T Consensus 39 ~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~v~d~~ 116 (331)
T 3u4y_A 39 GYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITP-DDQFAVTVTGLNHPFNMQSYSFL 116 (331)
T ss_dssp CCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECT-TSSEEEECCCSSSSCEEEEEETT
T ss_pred cCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECC-CCCEEEEecCCCCcccEEEEECC
Confidence 34455 89999999 6666665 89999999999987 66665 444444499999 999888555553 89999999
Q ss_pred CCcEEEEecCCCcEEEEEEeeCCCeEEEEe-cCCc-EEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEE-
Q 005352 426 SCHVVDWVDIRQIVTAVCYRPDGQGGIVGS-MMGD-CRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKV- 502 (701)
Q Consensus 426 ~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs-~dg~-v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l- 502 (701)
+++.+........+..++|+|+|+++++++ .++. +.+|++............. .........++|+| +++++
T Consensus 117 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~----~~~~~~~~~~~~sp-dg~~l~ 191 (331)
T 3u4y_A 117 KNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEF----ISGGTRPFNITFTP-DGNFAF 191 (331)
T ss_dssp TTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEE----ECSSSSEEEEEECT-TSSEEE
T ss_pred CCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCcc----ccCCCCccceEECC-CCCEEE
Confidence 999888777777889999999998766654 4588 9999998654332221111 12334578999999 56655
Q ss_pred EEEECCCcEEEEeCCccce---eeecccCCCCeEEEEEecCCCEEEEEe-CCCcEEEEeCCCCC
Q 005352 503 MVSCADSQVRILQGPNVIG---KYKGLRRSGNQLSACFTSDGKHIVSAG-EDSNVYMWNCIGHE 562 (701)
Q Consensus 503 ~~~s~dg~I~iwd~~~~~~---~~~~~~~~~~v~~l~~s~dg~~l~sgs-~Dg~I~iWd~~~~~ 562 (701)
+++..++.|++||+.+... .... .....+..++|+|+|++|+.++ .++.|.+||+.+++
T Consensus 192 v~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~ 254 (331)
T 3u4y_A 192 VANLIGNSIGILETQNPENITLLNAV-GTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGT 254 (331)
T ss_dssp EEETTTTEEEEEECSSTTSCEEEEEE-ECSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTE
T ss_pred EEeCCCCeEEEEECCCCcccceeeec-cCCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCc
Confidence 4555689999999875443 2222 2446778899999999876664 57889999998765
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.5e-17 Score=175.55 Aligned_cols=269 Identities=14% Similarity=0.165 Sum_probs=181.4
Q ss_pred cccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCC----CcEEEEEeecC-eeeeeecCCCCC
Q 005352 220 SKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDD----GVVRLWQVVED-ERLTEVDIPEID 294 (701)
Q Consensus 220 ~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D----g~I~iWd~~~~-~~~~~~~~~~~~ 294 (701)
+.++.|.+|.++.....+.... .+ |...+..++|+|+|++|++++.+ +.|.+|++... ..+
T Consensus 24 ~~~~~i~~~~~d~~~g~~~~~~---~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~--------- 89 (361)
T 3scy_A 24 GNSKGIYTFRFNEETGESLPLS---DA--EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTL--------- 89 (361)
T ss_dssp SSCCEEEEEEEETTTCCEEEEE---EE--ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEE---------
T ss_pred CCCCCEEEEEEeCCCCCEEEee---cc--cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcE---------
Confidence 3567899998865443333221 12 66778889999999999999886 79999998763 111
Q ss_pred CceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEE-
Q 005352 295 PSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSAS- 372 (701)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s- 372 (701)
+.+.....+......+++ ++ +|++++
T Consensus 90 --------------------------------------------------~~~~~~~~~~~~p~~~~~--dg~~l~~~~~ 117 (361)
T 3scy_A 90 --------------------------------------------------HLLNTQKTMGADPCYLTT--NGKNIVTANY 117 (361)
T ss_dssp --------------------------------------------------EEEEEEECSSSCEEEEEE--CSSEEEEEET
T ss_pred --------------------------------------------------EEeeEeccCCCCcEEEEE--CCCEEEEEEC
Confidence 111222334456677777 55 666655
Q ss_pred CCCcEEEEECCCCeeeeee----cC-----------CCCeEEEEEeeCCCCEEEEEE-cCCcEEEEeCCCCc-------E
Q 005352 373 IDKTVRLWRVGNDHCLRVF----PH-----------SNYVTCVHFNPVDDNYFISGS-IDGKVRIWAVLSCH-------V 429 (701)
Q Consensus 373 ~dg~I~iWd~~~~~~~~~~----~h-----------~~~V~~l~f~p~~~~~l~sgs-~dg~v~iwd~~~~~-------~ 429 (701)
.++.|.+|++.....+..+ .+ ...+.+++|+| ++++++++. .++.|.+|++.... +
T Consensus 118 ~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l 196 (361)
T 3scy_A 118 SGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITP-DGKYLLADDLGTDQIHKFNINPNANADNKEKF 196 (361)
T ss_dssp TTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTCCTTTCCCC
T ss_pred CCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECC-CCCEEEEEeCCCCEEEEEEEcCCCCcccccce
Confidence 6889999999765433221 11 23458899999 898666555 47899999887533 1
Q ss_pred -------EEEecCCCcEEEEEEeeCCCeEEEEe-cCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCE
Q 005352 430 -------VDWVDIRQIVTAVCYRPDGQGGIVGS-MMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSK 501 (701)
Q Consensus 430 -------~~~~~~~~~i~~i~~sp~g~~l~~gs-~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~ 501 (701)
.........+..++|+|+|+++++++ .++.|.+|++.++.+.....+. ....+......++|+| ++++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~---~~~~~~~~~~~i~~sp-dg~~ 272 (361)
T 3scy_A 197 LTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVA---ADTVNAQGSGDIHLSP-DGKY 272 (361)
T ss_dssp EEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEE---SCSSCCCCEEEEEECT-TSSE
T ss_pred eecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEe---cCCCCCCCcccEEECC-CCCE
Confidence 12233456688999999999888777 6899999999877653322221 1222334568999999 6777
Q ss_pred EEEEEC--CCcEEEEeCC--ccce-eeecccCCCCeEEEEEecCCCEEEEEe-CCCcEEEEeCC
Q 005352 502 VMVSCA--DSQVRILQGP--NVIG-KYKGLRRSGNQLSACFTSDGKHIVSAG-EDSNVYMWNCI 559 (701)
Q Consensus 502 l~~~s~--dg~I~iwd~~--~~~~-~~~~~~~~~~v~~l~~s~dg~~l~sgs-~Dg~I~iWd~~ 559 (701)
|+++.. ++.|.+|++. +... ..........+..++|+|+|++|++++ .++.|.+|+++
T Consensus 273 l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 273 LYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp EEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred EEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence 766665 4899999985 2221 111111245678999999999998887 67899997665
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.1e-18 Score=182.08 Aligned_cols=203 Identities=16% Similarity=0.169 Sum_probs=146.9
Q ss_pred CccCeEEEEEecCC-eEEEEECC-CcEEEEECC--CCe--eeeeecCCCCeEEEEEeeCCCCEEEEEEc-CCcEEEEeCC
Q 005352 353 HSGEILDLSWSKNN-YLLSASID-KTVRLWRVG--NDH--CLRVFPHSNYVTCVHFNPVDDNYFISGSI-DGKVRIWAVL 425 (701)
Q Consensus 353 h~~~I~~l~~s~~~-~l~s~s~d-g~I~iWd~~--~~~--~~~~~~h~~~V~~l~f~p~~~~~l~sgs~-dg~v~iwd~~ 425 (701)
|...+.+++|+|++ +|++++.+ +.|.+|++. +++ .+..+.....+.+++|+| ++++|++++. ++.|.+||+.
T Consensus 36 ~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~i~~~d~~ 114 (343)
T 1ri6_A 36 VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDH-QGQFVFVGSYNAGNVSVTRLE 114 (343)
T ss_dssp CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECT-TSSEEEEEETTTTEEEEEEEE
T ss_pred cCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcEEEEcC-CCCEEEEEecCCCeEEEEECC
Confidence 55678889999999 78888876 999999997 554 344455455889999999 8887776665 8889999994
Q ss_pred ---CCcEEEEecCCCcEEEEEEeeCCCeEEEEe-cCCcEEEEECCC-CeeeeeeeEEeecccCCCCCCeeEEEEecCCCC
Q 005352 426 ---SCHVVDWVDIRQIVTAVCYRPDGQGGIVGS-MMGDCRFYNVSD-NHLELDAEICVHSKKKAPCKRITGFQFLPQDSS 500 (701)
Q Consensus 426 ---~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs-~dg~v~i~d~~~-~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~ 500 (701)
..+..........+.+++|+|+++.+++++ .++.|.+||+.+ ++......... .......+..++|+| ++.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~p-dg~ 190 (343)
T 1ri6_A 115 DGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEV---TTVEGAGPRHMVFHP-NEQ 190 (343)
T ss_dssp TTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEE---ECSTTCCEEEEEECT-TSS
T ss_pred CCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeeccccc---ccCCCCCcceEEECC-CCC
Confidence 444555555666799999999999888887 899999999987 54332110011 112234678899999 566
Q ss_pred EEEEE-ECCCcEEEEeCCc--cc----eeeecc----cCCCCeEEEEEecCCCEEEE-EeCCCcEEEEeCCC
Q 005352 501 KVMVS-CADSQVRILQGPN--VI----GKYKGL----RRSGNQLSACFTSDGKHIVS-AGEDSNVYMWNCIG 560 (701)
Q Consensus 501 ~l~~~-s~dg~I~iwd~~~--~~----~~~~~~----~~~~~v~~l~~s~dg~~l~s-gs~Dg~I~iWd~~~ 560 (701)
+++++ ..++.|.+|++.. .. ...... .....+..++|+|+|++|++ +..++.|++|++..
T Consensus 191 ~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~ 262 (343)
T 1ri6_A 191 YAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSE 262 (343)
T ss_dssp EEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred EEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcC
Confidence 55554 4799999999853 11 111111 12346778999999998874 45799999999874
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.5e-18 Score=200.65 Aligned_cols=241 Identities=12% Similarity=0.084 Sum_probs=171.7
Q ss_pred CcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCc
Q 005352 251 GSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSES 330 (701)
Q Consensus 251 ~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (701)
..|.+++|+|| .+++.+. |+.|++||+.+++..
T Consensus 82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~--------------------------------------------- 114 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVT--------------------------------------------- 114 (706)
T ss_dssp CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEE---------------------------------------------
T ss_pred cCceeEEECCC-CeEEEEE-CCEEEEEECCCCceE---------------------------------------------
Confidence 56999999999 6665553 599999999776421
Q ss_pred cEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCC-----CeeeeeecC-CCC-------
Q 005352 331 ACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGN-----DHCLRVFPH-SNY------- 396 (701)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~-----~~~~~~~~h-~~~------- 396 (701)
.+..+...+.+++|+|+| +|++ ..++.|++||+.+ ++....... ...
T Consensus 115 ------------------~l~~~~~~~~~~~~SpdG~~la~-~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~ 175 (706)
T 2z3z_A 115 ------------------YLFDTNEETASLDFSPVGDRVAY-VRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAV 175 (706)
T ss_dssp ------------------EEECCTTCCTTCEECTTSSEEEE-EETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCC
T ss_pred ------------------EccCCcccccCCcCCCCCCEEEE-EECCeEEEEecCcccccCCCcEEeccCCCCCeEcccch
Confidence 122345567889999999 7777 4789999999998 776654442 222
Q ss_pred -------eEEEEEeeCCCCEEEEEE---------------------------------cCCcEEEEeCCCCcEEEEe---
Q 005352 397 -------VTCVHFNPVDDNYFISGS---------------------------------IDGKVRIWAVLSCHVVDWV--- 433 (701)
Q Consensus 397 -------V~~l~f~p~~~~~l~sgs---------------------------------~dg~v~iwd~~~~~~~~~~--- 433 (701)
+.+++|+| ++++|++++ .+..|++||+.+++.....
T Consensus 176 ~~ee~~~~~~~~~Sp-Dg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~ 254 (706)
T 2z3z_A 176 HQREFGIEKGTFWSP-KGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGE 254 (706)
T ss_dssp GGGCTTCCCSEEECT-TSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCS
T ss_pred hhhhcCCCceEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCC
Confidence 58999999 999999987 3467999999998866544
Q ss_pred cCCCcEEEEEEeeCCCeEEEEecCC-----cEEEEECCCC-eeeeeeeEEeecccCCCCCCeeEEEEec-CCCCEEEEEE
Q 005352 434 DIRQIVTAVCYRPDGQGGIVGSMMG-----DCRFYNVSDN-HLELDAEICVHSKKKAPCKRITGFQFLP-QDSSKVMVSC 506 (701)
Q Consensus 434 ~~~~~i~~i~~sp~g~~l~~gs~dg-----~v~i~d~~~~-~~~~~~~~~~~~~~~~~~~~i~~l~~~p-~~~~~l~~~s 506 (701)
.+...+..++|+|||+.|++++.++ .|.+||+.++ ....... .. .......+..+.|+| .++.+++++.
T Consensus 255 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~---~~-~~~~~~~~~~~~~sp~~dg~~l~~~~ 330 (706)
T 2z3z_A 255 PKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFV---ET-DKHYVEPLHPLTFLPGSNNQFIWQSR 330 (706)
T ss_dssp CTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEE---EE-CSSCCCCCSCCEECTTCSSEEEEEEC
T ss_pred CCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEE---cc-CCCeECccCCceeecCCCCEEEEEEc
Confidence 3556799999999999999988776 8999999987 3322111 11 111112346789998 2456888888
Q ss_pred CCCcEEEEeCC-ccceeeecccCCCCeEE-EEEecCCCEEEEEeC-CC----cEEEEeCCCCC
Q 005352 507 ADSQVRILQGP-NVIGKYKGLRRSGNQLS-ACFTSDGKHIVSAGE-DS----NVYMWNCIGHE 562 (701)
Q Consensus 507 ~dg~I~iwd~~-~~~~~~~~~~~~~~v~~-l~~s~dg~~l~sgs~-Dg----~I~iWd~~~~~ 562 (701)
.++.++||... +.........+...+.. ++|+|+|+.|+.++. ++ .|+.|++.+++
T Consensus 331 ~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~ 393 (706)
T 2z3z_A 331 RDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK 393 (706)
T ss_dssp TTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC
T ss_pred cCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC
Confidence 89999998765 22222233335566776 799999998866554 44 57777766654
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.4e-18 Score=200.93 Aligned_cols=288 Identities=13% Similarity=0.113 Sum_probs=193.9
Q ss_pred ceeeecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeec----
Q 005352 206 GERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVE---- 281 (701)
Q Consensus 206 ~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~---- 281 (701)
+..+.++++..++.+.++.|++|+...... ..+..|.+.+.+++|||||++||++ .|+.|++|++.+
T Consensus 84 v~~~~~spd~~~~~~~~~~i~~~d~~~~~~--------~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~ 154 (706)
T 2z3z_A 84 SFRTLDAGRGLVVLFTQGGLVGFDMLARKV--------TYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEG 154 (706)
T ss_dssp CEEEEETTTTEEEEEETTEEEEEETTTTEE--------EEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSC
T ss_pred ceeEEECCCCeEEEEECCEEEEEECCCCce--------EEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCccccc
Confidence 444444443434444679999999754321 2244567778999999999999995 679999999987
Q ss_pred -CeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEE
Q 005352 282 -DERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDL 360 (701)
Q Consensus 282 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l 360 (701)
++........... + .. +.+ ....+...+.++
T Consensus 155 ~g~~~~~~~~~~~~---~----------------------~~---------------------g~~--~~~ee~~~~~~~ 186 (706)
T 2z3z_A 155 MSRAIAVTIDGTET---L----------------------VY---------------------GQA--VHQREFGIEKGT 186 (706)
T ss_dssp CCCCEESCSCCBTT---E----------------------EE---------------------SSC--CGGGCTTCCCSE
T ss_pred CCCcEEeccCCCCC---e----------------------Ec---------------------ccc--hhhhhcCCCceE
Confidence 5432211100000 0 00 000 111233457889
Q ss_pred EEecCC-eEEEEE---------------------------------CCCcEEEEECCCCeeeeee---cCCCCeEEEEEe
Q 005352 361 SWSKNN-YLLSAS---------------------------------IDKTVRLWRVGNDHCLRVF---PHSNYVTCVHFN 403 (701)
Q Consensus 361 ~~s~~~-~l~s~s---------------------------------~dg~I~iWd~~~~~~~~~~---~h~~~V~~l~f~ 403 (701)
+|+|+| +|++++ .+..|++||+.+++..... .+...+.+++|+
T Consensus 187 ~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~s 266 (706)
T 2z3z_A 187 FWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWS 266 (706)
T ss_dssp EECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEEC
T ss_pred EECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEE
Confidence 999999 888887 4467999999998876554 366789999999
Q ss_pred eCCCCEEEEEEcCC-----cEEEEeCCCC-cEEEEe--cCCC---cEEEEEEee--CCCeEEEEecCCcEEEEECC-CCe
Q 005352 404 PVDDNYFISGSIDG-----KVRIWAVLSC-HVVDWV--DIRQ---IVTAVCYRP--DGQGGIVGSMMGDCRFYNVS-DNH 469 (701)
Q Consensus 404 p~~~~~l~sgs~dg-----~v~iwd~~~~-~~~~~~--~~~~---~i~~i~~sp--~g~~l~~gs~dg~v~i~d~~-~~~ 469 (701)
| ++++|++++.++ .|++||+.++ ...... .... .+..++|+| +|++++++..+|.+++|.+. ++.
T Consensus 267 p-dg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~ 345 (706)
T 2z3z_A 267 P-DENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGR 345 (706)
T ss_dssp T-TSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSC
T ss_pred C-CCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCC
Confidence 9 999999888776 8999999998 443333 2222 246789999 99999999999999999876 332
Q ss_pred eeeeeeEEeecccCCCCCCeeE-EEEecCCCCEEEEEE-CCC----cEEEEeCCccceeeecccCCCCeEEEEEecCCCE
Q 005352 470 LELDAEICVHSKKKAPCKRITG-FQFLPQDSSKVMVSC-ADS----QVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKH 543 (701)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~i~~-l~~~p~~~~~l~~~s-~dg----~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~ 543 (701)
.... ...+...+.. +.|+| +++.|+.++ .++ .|+.||..+... ....+...+.+++|+|||++
T Consensus 346 ~~~~--------l~~~~~~v~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~~~~~~--~~l~~~~~~~~~~~spdg~~ 414 (706)
T 2z3z_A 346 LIRQ--------VTKGEWEVTNFAGFDP-KGTRLYFESTEASPLERHFYCIDIKGGKT--KDLTPESGMHRTQLSPDGSA 414 (706)
T ss_dssp EEEE--------CCCSSSCEEEEEEECT-TSSEEEEEESSSCTTCBEEEEEETTCCCC--EESCCSSSEEEEEECTTSSE
T ss_pred EEEe--------cCCCCeEEEeeeEEcC-CCCEEEEEecCCCCceEEEEEEEcCCCCc--eeccCCCceEEEEECCCCCE
Confidence 2110 1223345666 79999 566555544 444 667777655332 22235677899999999999
Q ss_pred EEEEeCC----CcEEEEeCCCCC
Q 005352 544 IVSAGED----SNVYMWNCIGHE 562 (701)
Q Consensus 544 l~sgs~D----g~I~iWd~~~~~ 562 (701)
|+.+..+ +.|++||+.+++
T Consensus 415 l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 415 IIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp EEEEEECSSCSCEEEEEESSSCE
T ss_pred EEEEecCCCCCcEEEEEECCCCe
Confidence 8876443 569999998765
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.5e-18 Score=174.92 Aligned_cols=199 Identities=14% Similarity=0.080 Sum_probs=147.9
Q ss_pred cCCccCeEEEEEecCC-eEEEEECCCcEEEEECCC-Ceeeeeec-C-CCCeEEEEEeeCCCCEEEEEEc--CCc--EEEE
Q 005352 351 HGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGN-DHCLRVFP-H-SNYVTCVHFNPVDDNYFISGSI--DGK--VRIW 422 (701)
Q Consensus 351 ~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~-~~~~~~~~-h-~~~V~~l~f~p~~~~~l~sgs~--dg~--v~iw 422 (701)
..|...|.+++|+|++ +|++++ ++.|++||+.+ ++...... + ...+.+++|+| ++++|++++. ++. |.+|
T Consensus 38 ~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~l~~~ 115 (297)
T 2ojh_A 38 WQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISP-DGALYAISDKVEFGKSAIYLL 115 (297)
T ss_dssp EEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECT-TSSEEEEEECTTTSSCEEEEE
T ss_pred ccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECC-CCCEEEEEEeCCCCcceEEEE
Confidence 4477889999999999 777766 88999999999 87776664 3 47789999999 9999999983 344 4555
Q ss_pred eCCCCcEEEEecCCCcEEEEEEeeCCCeEE-EEecCCcEEEEECCC--CeeeeeeeEEeecccCCCCCCeeEEEEecCCC
Q 005352 423 AVLSCHVVDWVDIRQIVTAVCYRPDGQGGI-VGSMMGDCRFYNVSD--NHLELDAEICVHSKKKAPCKRITGFQFLPQDS 499 (701)
Q Consensus 423 d~~~~~~~~~~~~~~~i~~i~~sp~g~~l~-~gs~dg~v~i~d~~~--~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~ 499 (701)
++.+++...+ .....+..++|+|+++.|+ ++..++.+++|++.. .... ....+...+.++.|+| ++
T Consensus 116 ~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~---------~~~~~~~~~~~~~~s~-dg 184 (297)
T 2ojh_A 116 PSTGGTPRLM-TKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVET---------RLTHGEGRNDGPDYSP-DG 184 (297)
T ss_dssp ETTCCCCEEC-CSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEE---------ECCCSSSCEEEEEECT-TS
T ss_pred ECCCCceEEe-ecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcce---------EcccCCCccccceECC-CC
Confidence 5556554433 3344589999999999887 677899999998643 3221 1223446789999999 66
Q ss_pred CEEEEEE-CCCcEEEEeCC-ccceeeecccCCCCeEEEEEecCCCEEEEEeCC-----------CcEEEEeCCCCC
Q 005352 500 SKVMVSC-ADSQVRILQGP-NVIGKYKGLRRSGNQLSACFTSDGKHIVSAGED-----------SNVYMWNCIGHE 562 (701)
Q Consensus 500 ~~l~~~s-~dg~I~iwd~~-~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~D-----------g~I~iWd~~~~~ 562 (701)
..+++++ .++.+++|++. ..........+...+..++|+|+|++|++++.+ +.|++||+.+++
T Consensus 185 ~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~ 260 (297)
T 2ojh_A 185 RWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGN 260 (297)
T ss_dssp SEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCS
T ss_pred CEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCC
Confidence 7666655 58999999875 222333333466778899999999999988766 569999998765
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.82 E-value=2.8e-18 Score=185.83 Aligned_cols=208 Identities=13% Similarity=0.080 Sum_probs=146.2
Q ss_pred eeeecCccccccccccceEEEEEccCccch------hhhc--ccCceeccCCCcEEEEEEccCCCEEE----EEeCCCcE
Q 005352 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRSKE------LSAL--YKGQEIQAHDGSILTMKFSPDGQYLA----SAGDDGVV 274 (701)
Q Consensus 207 ~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~------~~~~--~~~~~l~~H~~~I~~l~fspdg~~La----sgs~Dg~I 274 (701)
.+++.....+++++.++ ++||+....... .... ........|.+.|.+++|+|+|++|| +|+.|+.|
T Consensus 42 lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v 120 (434)
T 2oit_A 42 LAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYGSII 120 (434)
T ss_dssp EEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTTEEEE
T ss_pred EEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCCCceE
Confidence 44555566677776666 899876421110 0000 11111234677899999999999999 88999999
Q ss_pred EEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCc
Q 005352 275 RLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHS 354 (701)
Q Consensus 275 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 354 (701)
+|||+.+..... ...... -..+..+.+|.
T Consensus 121 ~iwd~~~~~~~~-----~~~~~~----------------------------------------------~~~~~~~~~h~ 149 (434)
T 2oit_A 121 AFFDVRTFSNEA-----KQQKRP----------------------------------------------FAYHKLLKDAG 149 (434)
T ss_dssp EEEEHHHHHCTT-----CSSCCC----------------------------------------------SEEEECCCSGG
T ss_pred EEEEccccccCC-----cCCcce----------------------------------------------eeeeeccCCCC
Confidence 999997641000 000000 01123456799
Q ss_pred cCeEEEEEecC-C-eEEEEECCCcEEEEECCCCeeeeee-cCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEE
Q 005352 355 GEILDLSWSKN-N-YLLSASIDKTVRLWRVGNDHCLRVF-PHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD 431 (701)
Q Consensus 355 ~~I~~l~~s~~-~-~l~s~s~dg~I~iWd~~~~~~~~~~-~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~ 431 (701)
..|.+++|+|+ + +|++++.||+|++||++++..+... .|...|++++|+| ++++|++|+.||.|++||++ ++...
T Consensus 150 ~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wsp-dg~~lasgs~dg~v~iwd~~-~~~~~ 227 (434)
T 2oit_A 150 GMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSP-KGKQLAVGKQNGTVVQYLPT-LQEKK 227 (434)
T ss_dssp GSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECT-TSSCEEEEETTSCEEEECTT-CCEEE
T ss_pred CceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcC-CCCEEEEEcCCCcEEEEccC-Ccccc
Confidence 99999999998 5 8999999999999999998765443 4788999999999 89999999999999999998 43332
Q ss_pred -EecC-------CCcEEEEEEeeCCCeEEEEe-cCC------cEEEEECCCC
Q 005352 432 -WVDI-------RQIVTAVCYRPDGQGGIVGS-MMG------DCRFYNVSDN 468 (701)
Q Consensus 432 -~~~~-------~~~i~~i~~sp~g~~l~~gs-~dg------~v~i~d~~~~ 468 (701)
...+ ...+.+++|++++.++++.+ .+| .+++|+++..
T Consensus 228 ~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 228 VIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp EECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred cccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 2222 23799999999887775533 333 3899999865
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=2e-17 Score=173.57 Aligned_cols=243 Identities=9% Similarity=0.051 Sum_probs=181.6
Q ss_pred CCCcEEEEEEccCCCEEEEEeC-------CCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceee
Q 005352 249 HDGSILTMKFSPDGQYLASAGD-------DGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISIL 321 (701)
Q Consensus 249 H~~~I~~l~fspdg~~Lasgs~-------Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (701)
....+..++|+|+|++|++++. ++.|.+||..+++.+..+.
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~-------------------------------- 86 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIH-------------------------------- 86 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEE--------------------------------
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEe--------------------------------
Confidence 3456889999999999888874 5689999988775433221
Q ss_pred EEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEE-EEECCCcEEEEECCCCeeeeeecCCC----
Q 005352 322 KSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLL-SASIDKTVRLWRVGNDHCLRVFPHSN---- 395 (701)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~-s~s~dg~I~iWd~~~~~~~~~~~h~~---- 395 (701)
....+..++|+|++ +++ +...++.|.+||+.+++.+..+....
T Consensus 87 -------------------------------~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~ 135 (353)
T 3vgz_A 87 -------------------------------NDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRT 135 (353)
T ss_dssp -------------------------------ESSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCC
T ss_pred -------------------------------cCCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccc
Confidence 12235678999998 454 55557999999999999888776321
Q ss_pred ------CeEEEEEeeCCCCEEEEEE--cCCcEEEEeCCCCcEEEEec-CCCcEEEEEEeeCCCeEEEEecCCcEEEEECC
Q 005352 396 ------YVTCVHFNPVDDNYFISGS--IDGKVRIWAVLSCHVVDWVD-IRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVS 466 (701)
Q Consensus 396 ------~V~~l~f~p~~~~~l~sgs--~dg~v~iwd~~~~~~~~~~~-~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~ 466 (701)
.+.+++|+| ++++++++. .++.|.+||+.+++.+.... +...+..++|+|+++.+++++.++.|.+||+.
T Consensus 136 ~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~ 214 (353)
T 3vgz_A 136 EEVRPLQPRELVADD-ATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTA 214 (353)
T ss_dssp SSCCCCEEEEEEEET-TTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETT
T ss_pred cccCCCCCceEEECC-CCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECC
Confidence 278999999 888777766 47889999999999887766 55668899999999999999999999999999
Q ss_pred CCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEE-CCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEE
Q 005352 467 DNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSC-ADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIV 545 (701)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s-~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~ 545 (701)
+++....... ....+...+.+++|+| ++..+++++ .++.|.+||..+........... ...++|+|+|++++
T Consensus 215 ~~~~~~~~~~----~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~s~dg~~l~ 287 (353)
T 3vgz_A 215 DNKILSRKKL----LDDGKEHFFINISLDT-ARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE--SLAVLFNPARNEAY 287 (353)
T ss_dssp TTEEEEEEEC----CCSSSCCCEEEEEEET-TTTEEEEEESSSSEEEEEETTTCCEEEEEECSS--CCCEEEETTTTEEE
T ss_pred CCeEEEEEEc----CCCCCCcccceEEECC-CCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC--CceEEECCCCCEEE
Confidence 8876533221 1222345678899999 566555555 46999999997654433322122 25699999999766
Q ss_pred EEe-CCCcEEEEeCCCCC
Q 005352 546 SAG-EDSNVYMWNCIGHE 562 (701)
Q Consensus 546 sgs-~Dg~I~iWd~~~~~ 562 (701)
.++ .++.|.+||..+++
T Consensus 288 v~~~~~~~v~~~d~~~~~ 305 (353)
T 3vgz_A 288 VTHRQAGKVSVIDAKSYK 305 (353)
T ss_dssp EEETTTTEEEEEETTTTE
T ss_pred EEECCCCeEEEEECCCCe
Confidence 555 78999999988765
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.80 E-value=5.2e-19 Score=205.06 Aligned_cols=238 Identities=13% Similarity=0.129 Sum_probs=167.5
Q ss_pred cEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCcc
Q 005352 252 SILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESA 331 (701)
Q Consensus 252 ~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (701)
.+.+++|+|||+++++ +.||.|++||+.+++..
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~---------------------------------------------- 50 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTST---------------------------------------------- 50 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCE----------------------------------------------
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEE----------------------------------------------
Confidence 4678999999998877 78999999999887532
Q ss_pred EEEcCCccccccCCCeEEEcCCcc---CeEEEEEecCC-eEEEEECC---------CcEEEEECCCCeeeeeec---CCC
Q 005352 332 CVVFPPKVFRILEKPLHEFHGHSG---EILDLSWSKNN-YLLSASID---------KTVRLWRVGNDHCLRVFP---HSN 395 (701)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~h~~---~I~~l~~s~~~-~l~s~s~d---------g~I~iWd~~~~~~~~~~~---h~~ 395 (701)
..+.+|.. .|.+++|+|+| +|++++.+ +.|.+||+.+++...... +..
T Consensus 51 ----------------~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~ 114 (723)
T 1xfd_A 51 ----------------VLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNA 114 (723)
T ss_dssp ----------------EEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSC
T ss_pred ----------------EEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccc
Confidence 22233433 48999999999 88888775 778899999987632222 344
Q ss_pred CeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecC-CCc------------------EEEEEEeeCCCeEEEEec
Q 005352 396 YVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDI-RQI------------------VTAVCYRPDGQGGIVGSM 456 (701)
Q Consensus 396 ~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~------------------i~~i~~sp~g~~l~~gs~ 456 (701)
.+..++|+| +++.|+.++. +.|++||+.+++....... ... +.+++|+|||+.|++++.
T Consensus 115 ~~~~~~~SP-dG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~ 192 (723)
T 1xfd_A 115 KLQYAGWGP-KGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAI 192 (723)
T ss_dssp CCSBCCBCS-STTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEE
T ss_pred cccccEECC-CCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEE
Confidence 588999999 9999999885 7999999998877655433 222 378999999999999876
Q ss_pred CC----------------------------------cEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEE
Q 005352 457 MG----------------------------------DCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKV 502 (701)
Q Consensus 457 dg----------------------------------~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l 502 (701)
++ .|++||+.+++.... +........+...+..+.|+| +++++
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~--l~~~~~~~~~~~~~~~~~~Sp-Dg~~l 269 (723)
T 1xfd_A 193 NDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLE--MMPPDDPRMREYYITMVKWAT-STKVA 269 (723)
T ss_dssp ECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEE--CCCCCCGGGSSEEEEEEEESS-SSEEE
T ss_pred CCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEE--eeCCccCCCccceeEEEEEeC-CCeEE
Confidence 53 688888887653211 111100111245688999999 67777
Q ss_pred EEEEC----CCcEEEEeCCccceeeec-ccCCCCe----EEEEEecCCCEEEE--EeCCC------cEEEEe
Q 005352 503 MVSCA----DSQVRILQGPNVIGKYKG-LRRSGNQ----LSACFTSDGKHIVS--AGEDS------NVYMWN 557 (701)
Q Consensus 503 ~~~s~----dg~I~iwd~~~~~~~~~~-~~~~~~v----~~l~~s~dg~~l~s--gs~Dg------~I~iWd 557 (701)
++.+. +..|++||+.+....... ..+...+ ..++|+|||++|+. +..++ .|++|+
T Consensus 270 ~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d 341 (723)
T 1xfd_A 270 VTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSS 341 (723)
T ss_dssp EEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEEC
T ss_pred EEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEe
Confidence 66653 357999998765433221 1122333 37899999997765 45677 567777
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.80 E-value=6e-18 Score=196.07 Aligned_cols=276 Identities=9% Similarity=0.097 Sum_probs=187.2
Q ss_pred eeecCccccccccccceEEEEEccCccchhhhcccCceeccCCC---cEEEEEEccCCCEEEEEeCC---------CcEE
Q 005352 208 RVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDG---SILTMKFSPDGQYLASAGDD---------GVVR 275 (701)
Q Consensus 208 ~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~---~I~~l~fspdg~~Lasgs~D---------g~I~ 275 (701)
.++++++.+ +.+.++.|++|+...... .+.+.+|.. .|.+++|||||++||+++.+ +.|.
T Consensus 23 ~~spdg~~~-~~~~dg~i~~~d~~~g~~-------~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~ 94 (723)
T 1xfd_A 23 KWISDTEFI-YREQKGTVRLWNVETNTS-------TVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYV 94 (723)
T ss_dssp CBSSSSCBC-CCCSSSCEEEBCGGGCCC-------EEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEE
T ss_pred EEcCCCcEE-EEeCCCCEEEEECCCCcE-------EEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEE
Confidence 455555644 447889999998754322 123444554 49999999999999999875 7788
Q ss_pred EEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCcc
Q 005352 276 LWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSG 355 (701)
Q Consensus 276 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 355 (701)
+||+.+++. ..+ ....+|..
T Consensus 95 ~~d~~~~~~-~~l-----------------------------------------------------------~~~~~~~~ 114 (723)
T 1xfd_A 95 LSKIPHGDP-QSL-----------------------------------------------------------DPPEVSNA 114 (723)
T ss_dssp EEESSSCCC-EEC-----------------------------------------------------------CCTTCCSC
T ss_pred EEECCCCce-Eec-----------------------------------------------------------cCCccccc
Confidence 999987652 111 01124555
Q ss_pred CeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCC------------------eEEEEEeeCCCCEEEEEEc
Q 005352 356 EILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNY------------------VTCVHFNPVDDNYFISGSI 415 (701)
Q Consensus 356 ~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~------------------V~~l~f~p~~~~~l~sgs~ 415 (701)
.+..++|+|+| .|+.++. +.|++||+.+++...... +... +.+++|+| ++++|++++.
T Consensus 115 ~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~Sp-Dg~~la~~~~ 192 (723)
T 1xfd_A 115 KLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSP-DGTRLAYAAI 192 (723)
T ss_dssp CCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECT-TSSEEEEEEE
T ss_pred cccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECC-CCCEEEEEEE
Confidence 68889999999 8888776 799999999988776654 2322 37899999 9999998876
Q ss_pred CC----------------------------------cEEEEeCCCCcEE-EEecC------CCcEEEEEEeeCCCeEEEE
Q 005352 416 DG----------------------------------KVRIWAVLSCHVV-DWVDI------RQIVTAVCYRPDGQGGIVG 454 (701)
Q Consensus 416 dg----------------------------------~v~iwd~~~~~~~-~~~~~------~~~i~~i~~sp~g~~l~~g 454 (701)
++ .|++||+.+++.. .+..+ ...+..++|+|||+.+++.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~ 272 (723)
T 1xfd_A 193 NDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTW 272 (723)
T ss_dssp ECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEE
T ss_pred CCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEE
Confidence 53 7999999988753 33322 4678999999999988776
Q ss_pred ecC----CcEEEEECCCCeeeeeeeEEeecccCCCCCCe----eEEEEecCCCCEEE-E-EECCC------cEEEEe-CC
Q 005352 455 SMM----GDCRFYNVSDNHLELDAEICVHSKKKAPCKRI----TGFQFLPQDSSKVM-V-SCADS------QVRILQ-GP 517 (701)
Q Consensus 455 s~d----g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i----~~l~~~p~~~~~l~-~-~s~dg------~I~iwd-~~ 517 (701)
... ..|++||+.+++....... . +...+ ..++|+| +++.|+ + +..++ .|++|| ..
T Consensus 273 ~~~~~~~~~i~~~d~~~g~~~~~~~~--~-----~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~l~~~d~~~ 344 (723)
T 1xfd_A 273 LNRAQNVSILTLCDATTGVCTKKHED--E-----SEAWLHRQNEEPVFSK-DGRKFFFIRAIPQGGRGKFYHITVSSSQP 344 (723)
T ss_dssp EETTSCEEEEEEEETTTCCEEEEEEE--E-----CSSCCCCCCCCCEECT-TSCSEEEEEEECCSSSSCEEEEEEECSSC
T ss_pred EcCCCCeEEEEEEeCCCCcceEEEEe--c-----cCCEEeccCCCceEcC-CCCeEEEEEecccCCCcceeEEEEEeccC
Confidence 543 5799999988765432111 0 11112 3679999 455444 3 45566 577777 33
Q ss_pred ccce--eeecccCCCCeEE-EEEecCCCEEEEEeCC---CcEEEEeCCCC
Q 005352 518 NVIG--KYKGLRRSGNQLS-ACFTSDGKHIVSAGED---SNVYMWNCIGH 561 (701)
Q Consensus 518 ~~~~--~~~~~~~~~~v~~-l~~s~dg~~l~sgs~D---g~I~iWd~~~~ 561 (701)
.... ......+...+.. ++|+|||++|+..+.+ +.++||+++..
T Consensus 345 ~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~ 394 (723)
T 1xfd_A 345 NSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTV 394 (723)
T ss_dssp CSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSS
T ss_pred CCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCC
Confidence 3220 1122223344554 6999999999766555 78999998754
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=3.8e-17 Score=171.35 Aligned_cols=270 Identities=9% Similarity=0.055 Sum_probs=189.8
Q ss_pred eeecCccccccccc-------cceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEE-EEeCCCcEEEEEe
Q 005352 208 RVRLNEEDAMFCSK-------VQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLA-SAGDDGVVRLWQV 279 (701)
Q Consensus 208 ~~~~~~~~~~~~~~-------d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~La-sgs~Dg~I~iWd~ 279 (701)
.++++++.+++++. ++.|.+|+...... . +.+. +...+..++|+|+|++|+ +...++.|.+||.
T Consensus 47 ~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~--~-----~~~~-~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~ 118 (353)
T 3vgz_A 47 AYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEV--T-----QAIH-NDLKPFGATINNTTQTLWFGNTVNSAVTAIDA 118 (353)
T ss_dssp EEETTTTEEEEEECCCTTTEESEEEEEECTTTCCE--E-----EEEE-ESSCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred EECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeE--E-----EEEe-cCCCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence 34555556655442 67899998654321 1 1122 233467899999999655 4555799999999
Q ss_pred ecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEE
Q 005352 280 VEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILD 359 (701)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~ 359 (701)
.+++.+..+...... .+ -......+.+
T Consensus 119 ~~~~~~~~~~~~~~~--------------------------------------------------~~---~~~~~~~~~~ 145 (353)
T 3vgz_A 119 KTGEVKGRLVLDDRK--------------------------------------------------RT---EEVRPLQPRE 145 (353)
T ss_dssp TTCCEEEEEESCCCC--------------------------------------------------CC---SSCCCCEEEE
T ss_pred CCCeeEEEEecCCCc--------------------------------------------------cc---cccCCCCCce
Confidence 887755444321100 00 0001123678
Q ss_pred EEEecCC-eEEEEE--CCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEec-
Q 005352 360 LSWSKNN-YLLSAS--IDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVD- 434 (701)
Q Consensus 360 l~~s~~~-~l~s~s--~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~- 434 (701)
++|+|++ ++++++ .++.|.+||+.+++.+..+. +...+.+++|+| ++++++++..++.|.+||+.+++......
T Consensus 146 ~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~ 224 (353)
T 3vgz_A 146 LVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDS-EGKRLYTTNADGELITIDTADNKILSRKKL 224 (353)
T ss_dssp EEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEET-TTTEEEEECTTSEEEEEETTTTEEEEEEEC
T ss_pred EEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECC-CCCEEEEEcCCCeEEEEECCCCeEEEEEEc
Confidence 9999998 666555 47899999999999999888 666789999999 99999999999999999999998875543
Q ss_pred ----CCCcEEEEEEeeCCCeEEEEec-CCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEE-ECC
Q 005352 435 ----IRQIVTAVCYRPDGQGGIVGSM-MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVS-CAD 508 (701)
Q Consensus 435 ----~~~~i~~i~~sp~g~~l~~gs~-dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~-s~d 508 (701)
+...+..++|+|+++.+++++. ++.|.+||+.+++....... .....++|+| +++.++++ ..+
T Consensus 225 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~----------~~~~~~~~s~-dg~~l~v~~~~~ 293 (353)
T 3vgz_A 225 LDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAA----------PESLAVLFNP-ARNEAYVTHRQA 293 (353)
T ss_dssp CCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEEC----------SSCCCEEEET-TTTEEEEEETTT
T ss_pred CCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEc----------CCCceEEECC-CCCEEEEEECCC
Confidence 3456888999999998877765 48999999988775432221 1124689999 56655544 469
Q ss_pred CcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCC
Q 005352 509 SQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDS 551 (701)
Q Consensus 509 g~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg 551 (701)
+.|.+||..+........ ....+.+++|+|+|++|+.+..++
T Consensus 294 ~~v~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 294 GKVSVIDAKSYKVVKTFD-TPTHPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp TEEEEEETTTTEEEEEEE-CCSEEEEEEECTTSCEEEEEEECC
T ss_pred CeEEEEECCCCeEEEEEe-cCCCCCeEEEcCCCCEEEEEEccc
Confidence 999999987654433322 345789999999999887776553
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.6e-18 Score=180.48 Aligned_cols=241 Identities=10% Similarity=-0.015 Sum_probs=171.9
Q ss_pred CeEEEEEecCC-eE-EEEECCCcEEEEECCCCeeeeeecCCC------CeEEEEEeeCCCCEEEEEE------------c
Q 005352 356 EILDLSWSKNN-YL-LSASIDKTVRLWRVGNDHCLRVFPHSN------YVTCVHFNPVDDNYFISGS------------I 415 (701)
Q Consensus 356 ~I~~l~~s~~~-~l-~s~s~dg~I~iWd~~~~~~~~~~~h~~------~V~~l~f~p~~~~~l~sgs------------~ 415 (701)
.+..++|+|++ ++ ++++.++.|.+||+.+++.+..+.... .+.+++|+| ++++|+++. .
T Consensus 35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~ 113 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSP-DGKTLAIYESPVRLELTHFEVQ 113 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECT-TSSEEEEEEEEEEECSSCEEEC
T ss_pred CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECC-CCCEEEEEeccccccccccccc
Confidence 36788999998 55 556668899999999999887776433 678899999 898888886 5
Q ss_pred CCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEe
Q 005352 416 DGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFL 495 (701)
Q Consensus 416 dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~ 495 (701)
++.|.+||+.+++.+........+..++|+|++++|+++ ++.|.+||+.+++...... . ...... +.|+
T Consensus 114 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~----~--~~~~~~---~~~s 182 (337)
T 1pby_B 114 PTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKP----I--QSWEAE---TYAQ 182 (337)
T ss_dssp CCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEEC----S--TTTTTT---TBCC
T ss_pred CceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeee----c--cccCCC---ceeC
Confidence 799999999999888777667778899999999998888 6899999999887542211 1 110111 2567
Q ss_pred cCCCCEEEEEEC-CC-----------------------cEEEEeCCcccee-eecccCCCCeEEEEEecCCCEEEEEeCC
Q 005352 496 PQDSSKVMVSCA-DS-----------------------QVRILQGPNVIGK-YKGLRRSGNQLSACFTSDGKHIVSAGED 550 (701)
Q Consensus 496 p~~~~~l~~~s~-dg-----------------------~I~iwd~~~~~~~-~~~~~~~~~v~~l~~s~dg~~l~sgs~D 550 (701)
| ++..+++.+. ++ .|.+||..+.... .....+...+.+++|+|+|++|+++ +
T Consensus 183 ~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~ 259 (337)
T 1pby_B 183 P-DVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--Y 259 (337)
T ss_dssp C-BCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--E
T ss_pred C-CccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--C
Confidence 7 3444433332 22 4689998765432 2223355678899999999999988 7
Q ss_pred CcEEEEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccC
Q 005352 551 SNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFES 630 (701)
Q Consensus 551 g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s 630 (701)
+.|++||+.+++.. ..+ . ....+..++|+|+ +..+++++
T Consensus 260 ~~v~~~d~~~~~~~--------~~~-----------~------------------~~~~~~~~~~s~d----g~~l~~~~ 298 (337)
T 1pby_B 260 NVLESFDLEKNASI--------KRV-----------P------------------LPHSYYSVNVSTD----GSTVWLGG 298 (337)
T ss_dssp SEEEEEETTTTEEE--------EEE-----------E------------------CSSCCCEEEECTT----SCEEEEES
T ss_pred CeEEEEECCCCcCc--------cee-----------c------------------CCCceeeEEECCC----CCEEEEEc
Confidence 99999998876521 000 0 0113445678887 55666667
Q ss_pred CCCcccCCCCccCCCCcccccc
Q 005352 631 FPKGCATWPEEKLPALSQLSSA 652 (701)
Q Consensus 631 ~d~~~~~W~~~~~~~~~~~~~~ 652 (701)
.++.+.+|+.+....+..+..+
T Consensus 299 ~~~~i~v~d~~~~~~~~~~~~~ 320 (337)
T 1pby_B 299 ALGDLAAYDAETLEKKGQVDLP 320 (337)
T ss_dssp BSSEEEEEETTTCCEEEEEECG
T ss_pred CCCcEEEEECcCCcEEEEEEcC
Confidence 8899999999888776665443
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.79 E-value=3.7e-18 Score=184.96 Aligned_cols=258 Identities=16% Similarity=0.135 Sum_probs=171.6
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCC
Q 005352 250 DGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSE 329 (701)
Q Consensus 250 ~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (701)
...+..|++++++.+|++++.|+ |+||+....... .......
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~---~~~~~~~---------------------------------- 77 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQ---NKPGDDP---------------------------------- 77 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCC---CCTTCCT----------------------------------
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhh---cccccCc----------------------------------
Confidence 34578899999999999999988 999987542110 0000000
Q ss_pred ccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEE----EEECCCcEEEEECCCC--------ee---eeeec-
Q 005352 330 SACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLL----SASIDKTVRLWRVGND--------HC---LRVFP- 392 (701)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~----s~s~dg~I~iWd~~~~--------~~---~~~~~- 392 (701)
..... ..+... ..|...|.+++|+|++ +|+ +++.|++|+|||+.+. +. +..+.
T Consensus 78 ~~~~~---------~~~~~~-~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 147 (434)
T 2oit_A 78 NKIVD---------KVQGLL-VPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKD 147 (434)
T ss_dssp TCEEE---------CCCCEE-ECCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCS
T ss_pred ccccc---------cCcccc-ccCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCC
Confidence 00000 011111 2467789999999999 777 7888999999998654 22 23333
Q ss_pred CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEE-EEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeee
Q 005352 393 HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLE 471 (701)
Q Consensus 393 h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~-~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~ 471 (701)
|...|++++|+|.++++|++++.||+|++||++++..+ ....|...|++++|+|+|++|++|+.||.|++||++ +...
T Consensus 148 h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~ 226 (434)
T 2oit_A 148 AGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEK 226 (434)
T ss_dssp GGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEE
T ss_pred CCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Cccc
Confidence 78999999999944899999999999999999988655 455678899999999999999999999999999998 3322
Q ss_pred eeeeEEeecc-cCCCCCCeeEEEEecCCCCEEEE-EECCCc------EEEEeCCccc----eeeec---c-----cCCCC
Q 005352 472 LDAEICVHSK-KKAPCKRITGFQFLPQDSSKVMV-SCADSQ------VRILQGPNVI----GKYKG---L-----RRSGN 531 (701)
Q Consensus 472 ~~~~~~~~~~-~~~~~~~i~~l~~~p~~~~~l~~-~s~dg~------I~iwd~~~~~----~~~~~---~-----~~~~~ 531 (701)
.. +..+.. ...+...+.++.|++ +..++++ ...+|. +++|++.+.. ..+.. . ....+
T Consensus 227 ~~--~~~~~~~~~~~~~~v~~v~w~~-~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~ 303 (434)
T 2oit_A 227 KV--IPCPPFYESDHPVRVLDVLWIG-TYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQH 303 (434)
T ss_dssp EE--ECCCTTCCTTSCEEEEEEEEEE-TTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCC
T ss_pred cc--ccCCcccCCCCceeEEEEEEec-CceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCc
Confidence 11 111111 112334799999999 4555544 334433 8999987532 11111 1 12233
Q ss_pred eEEEEEecCCCEEEEEeC-CCcEEEEeCC
Q 005352 532 QLSACFTSDGKHIVSAGE-DSNVYMWNCI 559 (701)
Q Consensus 532 v~~l~~s~dg~~l~sgs~-Dg~I~iWd~~ 559 (701)
...+.+-++.+++++++. .+.|.|....
T Consensus 304 ~~~~~~l~dw~l~~v~s~~s~dv~vl~~~ 332 (434)
T 2oit_A 304 HYYLSYIEEWDLVLAASAASTEVSILARQ 332 (434)
T ss_dssp CEEEEEEGGGTEEEEEETTCSBCEEEEEC
T ss_pred ceeeehhccCCEEEEecCCCCceeEEEec
Confidence 334444577777776654 4557777644
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.78 E-value=8e-18 Score=189.99 Aligned_cols=263 Identities=10% Similarity=0.061 Sum_probs=191.4
Q ss_pred eeeecCccccccccc-cceEEEEEccCccchhhhcccCceeccCC-CcEEEEEEccCCCEEEEEeC---CCcEEEEEeec
Q 005352 207 ERVRLNEEDAMFCSK-VQRVKVYHCKKRSKELSALYKGQEIQAHD-GSILTMKFSPDGQYLASAGD---DGVVRLWQVVE 281 (701)
Q Consensus 207 ~~~~~~~~~~~~~~~-d~~v~vw~~~~~~~~~~~~~~~~~l~~H~-~~I~~l~fspdg~~Lasgs~---Dg~I~iWd~~~ 281 (701)
..++++++.+++++. +++++||++... .. +.+..|. ..|..+.|+|| +++++++. +...+||.+..
T Consensus 27 ~~~~~DG~~la~~s~~~g~~~lw~~~~g--~~------~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~ 97 (582)
T 3o4h_A 27 LQGVVDGDKLLVVGFSEGSVNAYLYDGG--ET------VKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNT 97 (582)
T ss_dssp EEEEETTTEEEEEEEETTEEEEEEEETT--EE------EECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEET
T ss_pred eecCCCCCeEEEEEccCCceeEEEEcCC--Cc------EeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEec
Confidence 456678888888776 999999996322 11 2233455 68999999999 78887775 56678887754
Q ss_pred --CeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEE
Q 005352 282 --DERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILD 359 (701)
Q Consensus 282 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~ 359 (701)
..... .+..+ ..+..
T Consensus 98 ~~~g~~~--------------------------------------------------------------~l~~~-~~~~~ 114 (582)
T 3o4h_A 98 SRPGEEQ--------------------------------------------------------------RLEAV-KPMRI 114 (582)
T ss_dssp TSTTCCE--------------------------------------------------------------ECTTS-CSBEE
T ss_pred cCCCccc--------------------------------------------------------------cccCC-CCcee
Confidence 21000 11111 12335
Q ss_pred EEEecCC--eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcC----CcEEEEeCCCCcEEEEe
Q 005352 360 LSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSID----GKVRIWAVLSCHVVDWV 433 (701)
Q Consensus 360 l~~s~~~--~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~d----g~v~iwd~~~~~~~~~~ 433 (701)
.+|+|++ .+++++.++.+.+||+.+++......+.. .+++|+| ++++|++++.+ +.|++||+.+++...+.
T Consensus 115 ~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~sp-DG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~ 191 (582)
T 3o4h_A 115 LSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDI-RGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFD 191 (582)
T ss_dssp EEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEE-ETTEEEEEEEEETTEEEEEEEETTTCCCEEEC
T ss_pred eeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECC-CCCEEEEEEEcCCCCeEEEEEcCCCCCceEee
Confidence 5778777 45555555556699999998777666544 8899999 99999988877 78999999999888888
Q ss_pred cCCCcEEEEEEeeCCCeEEEEecCC--cEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEE--------EecCCCCEEE
Q 005352 434 DIRQIVTAVCYRPDGQGGIVGSMMG--DCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQ--------FLPQDSSKVM 503 (701)
Q Consensus 434 ~~~~~i~~i~~sp~g~~l~~gs~dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~--------~~p~~~~~l~ 503 (701)
.+...+..++|+|||+.|+++..++ .|++||+.+++.. . ...+...+..+. |+|+ +.+++
T Consensus 192 ~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~--------~~~~~~~~~~~~~~~~~~~~~spd-g~~~~ 261 (582)
T 3o4h_A 192 SGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-D--------LELPSKDFSSYRPTAITWLGYLPD-GRLAV 261 (582)
T ss_dssp CSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-E--------CCCSCSHHHHHCCSEEEEEEECTT-SCEEE
T ss_pred cCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-E--------ccCCCcChhhhhhccccceeEcCC-CcEEE
Confidence 8888899999999999999888888 8999999887654 1 112233344445 9994 58999
Q ss_pred EEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCC---cEEEEeCCC
Q 005352 504 VSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDS---NVYMWNCIG 560 (701)
Q Consensus 504 ~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg---~I~iWd~~~ 560 (701)
+++.++.+++|++ .. ... .....+.+++|+ +++++++++.+. .|++|+..+
T Consensus 262 ~~~~~g~~~l~~~--g~-~~~--~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 262 VARREGRSAVFID--GE-RVE--APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp EEEETTEEEEEET--TE-EEC--CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred EEEcCCcEEEEEE--CC-eec--cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 9999999999999 22 121 244678899999 999999988774 477777654
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.6e-17 Score=173.82 Aligned_cols=240 Identities=9% Similarity=-0.013 Sum_probs=171.7
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEE
Q 005352 255 TMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVV 334 (701)
Q Consensus 255 ~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (701)
.+++++++.++++++.++.|.+||+.+++.+..+..
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~-------------------------------------------- 39 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVM-------------------------------------------- 39 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEEC--------------------------------------------
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEec--------------------------------------------
Confidence 456788899999999999999999988764433221
Q ss_pred cCCccccccCCCeEEEcCCccCeEEEEEecCC-eE-EEEECCCcEEEEECCCCeeeeeecCCC-------CeEEEEEeeC
Q 005352 335 FPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YL-LSASIDKTVRLWRVGNDHCLRVFPHSN-------YVTCVHFNPV 405 (701)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l-~s~s~dg~I~iWd~~~~~~~~~~~h~~-------~V~~l~f~p~ 405 (701)
+....+..++|+|++ ++ +++..++.|.+||+.+++.+..+.... .+.+++|+|
T Consensus 40 -----------------~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~sp- 101 (349)
T 1jmx_B 40 -----------------PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISP- 101 (349)
T ss_dssp -----------------SSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECT-
T ss_pred -----------------CCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECC-
Confidence 111245688999998 45 455578999999999999887776322 378999999
Q ss_pred CCCEEEEEEcC------------CcEEEEeCCCCc---EEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCee
Q 005352 406 DDNYFISGSID------------GKVRIWAVLSCH---VVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHL 470 (701)
Q Consensus 406 ~~~~l~sgs~d------------g~v~iwd~~~~~---~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~ 470 (701)
++++|++++.+ +.|.+||+.+++ .+....+...+.+++|+|+|+ +++++ +.|.+||+.+++.
T Consensus 102 dg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~~ 178 (349)
T 1jmx_B 102 DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LYVAG--PDIYKMDVKTGKY 178 (349)
T ss_dssp TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EEEES--SSEEEECTTTCCE
T ss_pred CCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-EEEcc--CcEEEEeCCCCce
Confidence 99999988865 899999998844 334445556788999999999 66654 4499999988765
Q ss_pred eeeeeEEeecc---------------------------c---------------------------------CCCCCCee
Q 005352 471 ELDAEICVHSK---------------------------K---------------------------------KAPCKRIT 490 (701)
Q Consensus 471 ~~~~~~~~~~~---------------------------~---------------------------------~~~~~~i~ 490 (701)
........... . ......+.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (349)
T 1jmx_B 179 TVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYF 258 (349)
T ss_dssp EEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEE
T ss_pred eccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcce
Confidence 43221100000 0 00112345
Q ss_pred EEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 491 GFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 491 ~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
.++++|.++.+++++ ++.|.+||+.+........ ....+.+++|+|+|++|++++.++.|++||+.+++
T Consensus 259 ~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~ 327 (349)
T 1jmx_B 259 TGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLE 327 (349)
T ss_dssp EEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTE
T ss_pred eeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEc-CCCCccceEECCCCCEEEEecCCCeEEEEeccccc
Confidence 667778346677766 8899999998654432222 33457789999999999988889999999998765
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.77 E-value=1.7e-17 Score=187.38 Aligned_cols=232 Identities=11% Similarity=0.060 Sum_probs=170.5
Q ss_pred CCCcEEEEEEccCCCEEEEEeC-CCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeec
Q 005352 249 HDGSILTMKFSPDGQYLASAGD-DGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRT 327 (701)
Q Consensus 249 H~~~I~~l~fspdg~~Lasgs~-Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (701)
+..+|++++|+|||++||+++. ||+++||++.+++.
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~------------------------------------------- 56 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET------------------------------------------- 56 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE-------------------------------------------
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc-------------------------------------------
Confidence 3567999999999999999887 99999999865532
Q ss_pred CCccEEEcCCccccccCCCeEEEcCCc-cCeEEEEEecCCeEEEEEC---CCcEEEEECCC---CeeeeeecCCCCeEEE
Q 005352 328 SESACVVFPPKVFRILEKPLHEFHGHS-GEILDLSWSKNNYLLSASI---DKTVRLWRVGN---DHCLRVFPHSNYVTCV 400 (701)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~I~~l~~s~~~~l~s~s~---dg~I~iWd~~~---~~~~~~~~h~~~V~~l 400 (701)
..+..|. ..+..++|+|+..+++++. +...++|.+.. +... .+.....+...
T Consensus 57 --------------------~~lt~~~~~~~~~~~~spd~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~~~~~~~ 115 (582)
T 3o4h_A 57 --------------------VKLNREPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEAVKPMRIL 115 (582)
T ss_dssp --------------------EECCSSCCSEECEECTTCSEEEEEEECSTTSCCEEEEEEETTSTTCCE-ECTTSCSBEEE
T ss_pred --------------------EeeecccccccccccCCCCeEEEEeccCCCCcceEEEEEeccCCCccc-cccCCCCceee
Confidence 1122343 5788999999855555654 45566665433 2222 34333345577
Q ss_pred EEeeCCCC-EEEEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecC----CcEEEEECCCCeeeeeee
Q 005352 401 HFNPVDDN-YFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMM----GDCRFYNVSDNHLELDAE 475 (701)
Q Consensus 401 ~f~p~~~~-~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~d----g~v~i~d~~~~~~~~~~~ 475 (701)
+|+| +++ .+++...++.+.+||+.+++...+..+.. .+++|+|||+.|+.++.+ +.|++||+.+++...
T Consensus 116 ~~s~-dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~--- 189 (582)
T 3o4h_A 116 SGVD-TGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRV--- 189 (582)
T ss_dssp EEEE-CSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEE---
T ss_pred eeCC-CCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceE---
Confidence 8888 664 34444455566699999998776665554 889999999999988776 779999998876431
Q ss_pred EEeecccCCCCCCeeEEEEecCCCCEEEEEECCC--cEEEEeCCccceeeecccCCCCeEEEE--------EecCCCEEE
Q 005352 476 ICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADS--QVRILQGPNVIGKYKGLRRSGNQLSAC--------FTSDGKHIV 545 (701)
Q Consensus 476 ~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg--~I~iwd~~~~~~~~~~~~~~~~v~~l~--------~s~dg~~l~ 545 (701)
...+...+..++|+| +++.|+++..++ .|++||..+.... ....+...+..++ |+|||.+++
T Consensus 190 ------l~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~ 261 (582)
T 3o4h_A 190 ------FDSGEGSFSSASISP-GMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAV 261 (582)
T ss_dssp ------ECCSSCEEEEEEECT-TSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEE
T ss_pred ------eecCCCccccceECC-CCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEE
Confidence 123345679999999 788888888888 8999998865554 3334555566666 999999999
Q ss_pred EEeCCCcEEEEeC
Q 005352 546 SAGEDSNVYMWNC 558 (701)
Q Consensus 546 sgs~Dg~I~iWd~ 558 (701)
+++.|+.+++|++
T Consensus 262 ~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 262 VARREGRSAVFID 274 (582)
T ss_dssp EEEETTEEEEEET
T ss_pred EEEcCCcEEEEEE
Confidence 9999999999999
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.75 E-value=1.7e-16 Score=167.97 Aligned_cols=272 Identities=11% Similarity=0.019 Sum_probs=176.6
Q ss_pred ceEEEEEccCccchhhhcccCcee-ccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEee-cCeeeeeecCCCCCCceeEE
Q 005352 223 QRVKVYHCKKRSKELSALYKGQEI-QAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVV-EDERLTEVDIPEIDPSCIYF 300 (701)
Q Consensus 223 ~~v~vw~~~~~~~~~~~~~~~~~l-~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~-~~~~~~~~~~~~~~~~~~~~ 300 (701)
+.|.+|.++.....+..+. .. .++...+..++|+|+|++|++++.+ .|.+|++. +++.....
T Consensus 14 ~~i~~~~~d~~~g~l~~~~---~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~------------ 77 (365)
T 1jof_A 14 GAIFTVQFDDEKLTCKLIK---RTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEA------------ 77 (365)
T ss_dssp CEEEEEEEETTTTEEEEEE---EEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEE------------
T ss_pred CcEEEEEEECCCCCEEEee---EEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEee------------
Confidence 4688877654333222111 11 1234467889999999999999988 99999997 55422110
Q ss_pred eeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-e-E-EEEE-----
Q 005352 301 TVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-Y-L-LSAS----- 372 (701)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~-l-~s~s----- 372 (701)
....+ +.+.+++|+|++ + + ++++
T Consensus 78 ------------------------------------------------~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~ 108 (365)
T 1jof_A 78 ------------------------------------------------SHPIG-GHPRANDADTNTRAIFLLAAKQPPYA 108 (365)
T ss_dssp ------------------------------------------------EEECC-SSGGGGCTTSCCEEEEEEECSSTTCC
T ss_pred ------------------------------------------------EeecC-CCCccEEECCCCCEEEEEEecCCcce
Confidence 00001 113347888988 3 3 3442
Q ss_pred --------CCCcEEEEECC-CCeeeeeec-----CCCCeEEEEEeeCCCCEEEEEEc-CCcEEEEeCC-CCcEEE--Eec
Q 005352 373 --------IDKTVRLWRVG-NDHCLRVFP-----HSNYVTCVHFNPVDDNYFISGSI-DGKVRIWAVL-SCHVVD--WVD 434 (701)
Q Consensus 373 --------~dg~I~iWd~~-~~~~~~~~~-----h~~~V~~l~f~p~~~~~l~sgs~-dg~v~iwd~~-~~~~~~--~~~ 434 (701)
.++++.+|++. .++....+. +...+.+++|+| ++++|+++.. ++.|++||+. +++... ...
T Consensus 109 ~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~sp-dG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~ 187 (365)
T 1jof_A 109 VYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDP-TETYLYSADLTANKLWTHRKLASGEVELVGSVD 187 (365)
T ss_dssp EEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEE
T ss_pred eccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECC-CCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEe
Confidence 68999999997 455543332 456799999999 9998887664 6789999998 676532 222
Q ss_pred ---CCCcEEEEEEeeCCCeEEEEec-CCcEEEEECC--CCeeeee-eeEEeecc-cCCCCC------CeeEEE-EecCCC
Q 005352 435 ---IRQIVTAVCYRPDGQGGIVGSM-MGDCRFYNVS--DNHLELD-AEICVHSK-KKAPCK------RITGFQ-FLPQDS 499 (701)
Q Consensus 435 ---~~~~i~~i~~sp~g~~l~~gs~-dg~v~i~d~~--~~~~~~~-~~~~~~~~-~~~~~~------~i~~l~-~~p~~~ 499 (701)
+...+..++|+|+|+++++++. ++.|.+|++. ++++... ..+..... ...+.. .+..++ |+| ++
T Consensus 188 ~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~sp-dG 266 (365)
T 1jof_A 188 APDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTF-SG 266 (365)
T ss_dssp CSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECT-TS
T ss_pred cCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECC-CC
Confidence 2566899999999999988775 6899999875 3443211 11111100 011111 578999 999 67
Q ss_pred CEEEEEECC-C-----cEEEEeCC-ccceee--e-cccCCCCeEEEEEec---CCCEEEEEeCC-CcEEEEeCCCC
Q 005352 500 SKVMVSCAD-S-----QVRILQGP-NVIGKY--K-GLRRSGNQLSACFTS---DGKHIVSAGED-SNVYMWNCIGH 561 (701)
Q Consensus 500 ~~l~~~s~d-g-----~I~iwd~~-~~~~~~--~-~~~~~~~v~~l~~s~---dg~~l~sgs~D-g~I~iWd~~~~ 561 (701)
++|+++..+ + .|.+|++. +..... . ...+...+..++|+| +|++|++++.+ +.|.+|+++..
T Consensus 267 ~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 267 KYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp SEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 777766543 3 89999985 322211 1 111344566789999 89999999865 89999998765
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.3e-15 Score=159.71 Aligned_cols=201 Identities=14% Similarity=0.167 Sum_probs=138.5
Q ss_pred CccCeEEEEEecCCeEEEEEC---CCcEEEEECCCCee--eeee-cCCCCeEEEEEeeCCCCEEEEEE-cCCcEEEEeCC
Q 005352 353 HSGEILDLSWSKNNYLLSASI---DKTVRLWRVGNDHC--LRVF-PHSNYVTCVHFNPVDDNYFISGS-IDGKVRIWAVL 425 (701)
Q Consensus 353 h~~~I~~l~~s~~~~l~s~s~---dg~I~iWd~~~~~~--~~~~-~h~~~V~~l~f~p~~~~~l~sgs-~dg~v~iwd~~ 425 (701)
+...+..++|+|++.|++++. ++.|.+|++.+++. +..+ .+...+..++|+| ++++|++++ .++.|.+|++.
T Consensus 38 ~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~sp-dg~~l~~~~~~~~~v~v~~~~ 116 (347)
T 3hfq_A 38 ATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDE-ARQLVYSANYHKGTAEVMKIA 116 (347)
T ss_dssp ECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEET-TTTEEEEEETTTTEEEEEEEC
T ss_pred ccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECC-CCCEEEEEeCCCCEEEEEEeC
Confidence 345677899999995554443 68999999977763 3332 2677889999999 999888887 67899999996
Q ss_pred -CCc--EEEEecCC----------CcEEEEEEeeCCCeEEEEecCCcEEEEECC-CCeeeeeeeEEeecccCCCCCCeeE
Q 005352 426 -SCH--VVDWVDIR----------QIVTAVCYRPDGQGGIVGSMMGDCRFYNVS-DNHLELDAEICVHSKKKAPCKRITG 491 (701)
Q Consensus 426 -~~~--~~~~~~~~----------~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~-~~~~~~~~~~~~~~~~~~~~~~i~~ 491 (701)
++. .+...... ..+.+++|+|+|+.+++...++.|.+|++. ++.+...... .......+..
T Consensus 117 ~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~-----~~~~g~~p~~ 191 (347)
T 3hfq_A 117 ADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVL-----TMEAGFGPRH 191 (347)
T ss_dssp TTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEE-----ECCTTCCEEE
T ss_pred CCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeE-----EcCCCCCCce
Confidence 333 22222221 248899999999966666678899999998 4443322111 1112245778
Q ss_pred EEEecCCCCEEEE-EECCCcEEEEeCCc--cce----eeecccC----CCCeEEEEEecCCCEE-EEEeCCCcEEEEeCC
Q 005352 492 FQFLPQDSSKVMV-SCADSQVRILQGPN--VIG----KYKGLRR----SGNQLSACFTSDGKHI-VSAGEDSNVYMWNCI 559 (701)
Q Consensus 492 l~~~p~~~~~l~~-~s~dg~I~iwd~~~--~~~----~~~~~~~----~~~v~~l~~s~dg~~l-~sgs~Dg~I~iWd~~ 559 (701)
++|+| +++++++ ...++.|.+|++.. ... ....... ...+..++|+|+|++| ++...++.|.+|++.
T Consensus 192 ~~~sp-dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~ 270 (347)
T 3hfq_A 192 LVFSP-DGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVT 270 (347)
T ss_dssp EEECT-TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEEC
T ss_pred EEECC-CCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEEC
Confidence 99999 5665555 56689999998763 211 1111111 1458899999999988 555678999999986
Q ss_pred C
Q 005352 560 G 560 (701)
Q Consensus 560 ~ 560 (701)
.
T Consensus 271 ~ 271 (347)
T 3hfq_A 271 A 271 (347)
T ss_dssp G
T ss_pred C
Confidence 3
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=5.7e-17 Score=187.78 Aligned_cols=242 Identities=10% Similarity=0.051 Sum_probs=165.0
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEE
Q 005352 255 TMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVV 334 (701)
Q Consensus 255 ~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (701)
.++|+|+|++++++ .|+.|++||+.+++...
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~------------------------------------------------ 50 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSYT------------------------------------------------ 50 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCCEEE------------------------------------------------
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCcEEE------------------------------------------------
Confidence 78999999766555 69999999998875321
Q ss_pred cCCccccccCCCeEEEcCCcc---CeEEEEEecCC-eEEEEEC---------CCcEEEEECCCCeeeeeecCCCCeEEEE
Q 005352 335 FPPKVFRILEKPLHEFHGHSG---EILDLSWSKNN-YLLSASI---------DKTVRLWRVGNDHCLRVFPHSNYVTCVH 401 (701)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~h~~---~I~~l~~s~~~-~l~s~s~---------dg~I~iWd~~~~~~~~~~~h~~~V~~l~ 401 (701)
.+.+|.. .|.+++|||+| +|++++. ++.|++||+.+++.+........+..++
T Consensus 51 --------------~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~~~~~~~~ 116 (719)
T 1z68_A 51 --------------ILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELPRPIQYLC 116 (719)
T ss_dssp --------------EECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCSSBCCEE
T ss_pred --------------EEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecCcccccce
Confidence 1222322 48899999999 7887776 7899999999998742222346789999
Q ss_pred EeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEec--CCCcE-----------------EEEEEeeCCCeEEEEecCC----
Q 005352 402 FNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVD--IRQIV-----------------TAVCYRPDGQGGIVGSMMG---- 458 (701)
Q Consensus 402 f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~--~~~~i-----------------~~i~~sp~g~~l~~gs~dg---- 458 (701)
|+| +++.|+.+. ++.|++||+.+++...+.. +...+ .+++|+|||+.|+.++.+.
T Consensus 117 ~SP-DG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~ 194 (719)
T 1z68_A 117 WSP-VGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIP 194 (719)
T ss_dssp ECS-STTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSC
T ss_pred ECC-CCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCc
Confidence 999 999999886 7899999998887664432 22222 4899999999999987652
Q ss_pred ------------------------------cEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECC
Q 005352 459 ------------------------------DCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD 508 (701)
Q Consensus 459 ------------------------------~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~d 508 (701)
.|++||+.+++......+........+...+..++|+|+ +.++++....
T Consensus 195 ~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD-~~~~~~~~~~ 273 (719)
T 1z68_A 195 VIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTD-ERVCLQWLKR 273 (719)
T ss_dssp EEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSS-SEEEEEEEES
T ss_pred eEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCC-CeEEEEEecc
Confidence 688899887653100011000111235567899999994 6666664433
Q ss_pred ----CcEEEEe----CCccceeeec----ccCCCCeE-----EEEEecCCCEEEE--EeCCC--cEEEEeCCCCC
Q 005352 509 ----SQVRILQ----GPNVIGKYKG----LRRSGNQL-----SACFTSDGKHIVS--AGEDS--NVYMWNCIGHE 562 (701)
Q Consensus 509 ----g~I~iwd----~~~~~~~~~~----~~~~~~v~-----~l~~s~dg~~l~s--gs~Dg--~I~iWd~~~~~ 562 (701)
..|.+|| ..+....... ..+...+. .+.|+|||+.|+. ...+| .|++|++.+++
T Consensus 274 ~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~ 348 (719)
T 1z68_A 274 VQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN 348 (719)
T ss_dssp STTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT
T ss_pred ccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc
Confidence 2488899 6543322221 23455555 7899999996554 44555 57777877655
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=7.5e-14 Score=141.96 Aligned_cols=246 Identities=7% Similarity=0.078 Sum_probs=174.9
Q ss_pred cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeec
Q 005352 248 AHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRT 327 (701)
Q Consensus 248 ~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (701)
+|-..+.+|+++++|+++++...++.|.+||.. ++.+..+....
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~----------------------------------- 70 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECG----------------------------------- 70 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBS-----------------------------------
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccC-----------------------------------
Confidence 466789999999999998888889999999975 33222221000
Q ss_pred CCccEEEcCCccccccCCCeEEEcCCccCeEEEEEe-cCCeEEEEEC--CCcEEEEECCCCeeeeeec--CCCCeEEEEE
Q 005352 328 SESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS-KNNYLLSASI--DKTVRLWRVGNDHCLRVFP--HSNYVTCVHF 402 (701)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s-~~~~l~s~s~--dg~I~iWd~~~~~~~~~~~--h~~~V~~l~f 402 (701)
...+|...+..+++. +++.|+.+.. ++.|.+|| .+++.+..+. +...+.++++
T Consensus 71 ---------------------~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~ 128 (286)
T 1q7f_A 71 ---------------------KRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTV 128 (286)
T ss_dssp ---------------------SSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEE
T ss_pred ---------------------CCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEE
Confidence 002345568899995 6675555543 88999999 5677776664 3457899999
Q ss_pred eeCCCCEEEEEEcCCcEEEEeCCCCcEEEEe---cCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEee
Q 005352 403 NPVDDNYFISGSIDGKVRIWAVLSCHVVDWV---DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVH 479 (701)
Q Consensus 403 ~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~---~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~ 479 (701)
+| +++++++...++.|.+||.. ++.+... .....+..++++|+|+.+++...++.|++|+........ .
T Consensus 129 ~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~-----~- 200 (286)
T 1q7f_A 129 DN-KGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQ-----I- 200 (286)
T ss_dssp CT-TSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEE-----E-
T ss_pred eC-CCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCCEEEE-----E-
Confidence 99 88888887778999999965 4444433 233568999999999977777889999999986542211 1
Q ss_pred cccCCCCCCeeEEEEecCCCCEEEEEECCC-cEEEEeCCcc-ceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEe
Q 005352 480 SKKKAPCKRITGFQFLPQDSSKVMVSCADS-QVRILQGPNV-IGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWN 557 (701)
Q Consensus 480 ~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg-~I~iwd~~~~-~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd 557 (701)
. .......+.++++.+ ++.++++...++ .|.+||.... ...+........+.+++++|+|+++++ +.|+.|++|+
T Consensus 201 ~-~~g~~~~p~~i~~d~-~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~ 277 (286)
T 1q7f_A 201 G-GEGITNYPIGVGINS-NGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYR 277 (286)
T ss_dssp S-CTTTSCSEEEEEECT-TCCEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEE
T ss_pred c-cCCccCCCcEEEECC-CCCEEEEeCCCCEEEEEECCCCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEE
Confidence 1 112235688999999 677777777776 9999996532 233333223345789999999987777 6799999999
Q ss_pred CCCCC
Q 005352 558 CIGHE 562 (701)
Q Consensus 558 ~~~~~ 562 (701)
+....
T Consensus 278 ~~~~~ 282 (286)
T 1q7f_A 278 YVQLA 282 (286)
T ss_dssp CSCCC
T ss_pred ccccc
Confidence 86543
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.9e-15 Score=160.95 Aligned_cols=279 Identities=11% Similarity=0.027 Sum_probs=176.0
Q ss_pred eeeecCccccccccc-cce--EEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCe
Q 005352 207 ERVRLNEEDAMFCSK-VQR--VKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDE 283 (701)
Q Consensus 207 ~~~~~~~~~~~~~~~-d~~--v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~ 283 (701)
..+++++..+++.+. ++. |.+|+.... +... ...+|...+..+.|+|||++|+.++.++.|.+||+.+++
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g--~~~~-----lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~ 113 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQ--VATQ-----LTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLE 113 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTC--EEEE-----CCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCC
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCC--ceEE-----eeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence 357778888888776 664 555554332 2221 223455555567899999999999999999999998875
Q ss_pred eeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEE--
Q 005352 284 RLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLS-- 361 (701)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~-- 361 (701)
...... .+...+....
T Consensus 114 ~~~~~~--------------------------------------------------------------~~~~~~~~~~~~ 131 (388)
T 3pe7_A 114 ENVVYQ--------------------------------------------------------------VPAEWVGYGTWV 131 (388)
T ss_dssp EEEEEE--------------------------------------------------------------CCTTEEEEEEEE
T ss_pred ceeeee--------------------------------------------------------------chhhccccccee
Confidence 332221 1222222222
Q ss_pred EecCC-eEEE----------------------EECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcC--
Q 005352 362 WSKNN-YLLS----------------------ASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSID-- 416 (701)
Q Consensus 362 ~s~~~-~l~s----------------------~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~d-- 416 (701)
+++++ +++. ...+..|.+||+.+++......+...+..++|+|.+++.|+....+
T Consensus 132 ~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~ 211 (388)
T 3pe7_A 132 ANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPH 211 (388)
T ss_dssp ECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCT
T ss_pred ECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCC
Confidence 25555 3332 2244679999999998777777788899999999556777766653
Q ss_pred ----CcEEEEeCCCCcEEEEecCC--CcEEEEEEeeCCCeEEEEec-CC----cEEEEECCCCeeeeeeeEEeecccCCC
Q 005352 417 ----GKVRIWAVLSCHVVDWVDIR--QIVTAVCYRPDGQGGIVGSM-MG----DCRFYNVSDNHLELDAEICVHSKKKAP 485 (701)
Q Consensus 417 ----g~v~iwd~~~~~~~~~~~~~--~~i~~i~~sp~g~~l~~gs~-dg----~v~i~d~~~~~~~~~~~~~~~~~~~~~ 485 (701)
..|.++|+..+....+..+. ..+..++|+|+|+.|+..+. ++ .|++||+.+++..............
T Consensus 212 ~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~-- 289 (388)
T 3pe7_A 212 DLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLM-- 289 (388)
T ss_dssp TTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEE--
T ss_pred CCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeee--
Confidence 37888888777665555544 35788999999998866443 22 3999999988653322111000000
Q ss_pred CCCeeEEEEecCCCCEEEEE---------ECCCcEEEEeCCccceeeecccCCC-----------CeEEEEEecCCCEEE
Q 005352 486 CKRITGFQFLPQDSSKVMVS---------CADSQVRILQGPNVIGKYKGLRRSG-----------NQLSACFTSDGKHIV 545 (701)
Q Consensus 486 ~~~i~~l~~~p~~~~~l~~~---------s~dg~I~iwd~~~~~~~~~~~~~~~-----------~v~~l~~s~dg~~l~ 545 (701)
.....+.|+| ++..|+.. ..+..|++||+...... ....+.. .+..++|+|||++|+
T Consensus 290 -~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~ 366 (388)
T 3pe7_A 290 -SNYDGSLMVG-DGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQH-RVARHDTSWKVFEGDRQVTHPHPSFTPDDKQIL 366 (388)
T ss_dssp -ECTTSSEEEE-EECCC------------CCCCEEEEEETTTTEEE-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEE
T ss_pred -ecCCCCeEcc-CCCcceeEeeeccccccCCCCEEEEEeccCCceE-EeccccCcccccccccccCCCCccCCCCCCEEE
Confidence 0011236889 45555543 45678999998754322 1112333 478889999999888
Q ss_pred EEe-CCCcEEEEeCC
Q 005352 546 SAG-EDSNVYMWNCI 559 (701)
Q Consensus 546 sgs-~Dg~I~iWd~~ 559 (701)
.++ .+|...||.++
T Consensus 367 ~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 367 FTSDVHGKPALYLAT 381 (388)
T ss_dssp EEECTTSSCEEEEEE
T ss_pred EEecCCCceeEEEEE
Confidence 665 46777777654
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.67 E-value=1e-15 Score=160.01 Aligned_cols=236 Identities=10% Similarity=0.085 Sum_probs=165.1
Q ss_pred EEEecCC-eEEEEECCCcEEEEECCCCeeeeeecCCC--CeEEEEEeeCCCCEEE-EEEcCCcEEEEeCCCCcEEEEecC
Q 005352 360 LSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSN--YVTCVHFNPVDDNYFI-SGSIDGKVRIWAVLSCHVVDWVDI 435 (701)
Q Consensus 360 l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~h~~--~V~~l~f~p~~~~~l~-sgs~dg~v~iwd~~~~~~~~~~~~ 435 (701)
+++++++ ++++++.+++|++||+.+++.+..+.... .+..++|+| ++++++ ++..++.|.+||+.+++.+.....
T Consensus 5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~ 83 (349)
T 1jmx_B 5 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAP-DNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 83 (349)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred ccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECC-CCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence 4567777 88899999999999999999988887544 688999999 887654 555689999999999887755543
Q ss_pred CC-------cEEEEEEeeCCCeEEEEecC------------CcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEec
Q 005352 436 RQ-------IVTAVCYRPDGQGGIVGSMM------------GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLP 496 (701)
Q Consensus 436 ~~-------~i~~i~~sp~g~~l~~gs~d------------g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p 496 (701)
.. .+..++|+|+|+++++++.+ +.|.+||+.+++........ .....+.+++|+|
T Consensus 84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~------~~~~~~~~~~~s~ 157 (349)
T 1jmx_B 84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF------PMPRQVYLMRAAD 157 (349)
T ss_dssp CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE------ECCSSCCCEEECT
T ss_pred ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeec------cCCCcccceeECC
Confidence 22 27889999999999998865 89999999875432111110 1123578899999
Q ss_pred CCCCEEEEEECCCcEEEEeCCccceeeecccC------------------------------------------------
Q 005352 497 QDSSKVMVSCADSQVRILQGPNVIGKYKGLRR------------------------------------------------ 528 (701)
Q Consensus 497 ~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~------------------------------------------------ 528 (701)
++. +++++ +.|++||..+.........+
T Consensus 158 -dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 233 (349)
T 1jmx_B 158 -DGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLY 233 (349)
T ss_dssp -TSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEE
T ss_pred -CCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccce
Confidence 556 55543 34999998653322111000
Q ss_pred --------------------CCCeEEEEEec-CCCEEEEEeCCCcEEEEeCCCCCCCCccccccccccccccCCceEEec
Q 005352 529 --------------------SGNQLSACFTS-DGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIP 587 (701)
Q Consensus 529 --------------------~~~v~~l~~s~-dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 587 (701)
...+..++|+| +|++|+++ ++.|++||+.+++.. ..+.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~--------~~~~----------- 292 (349)
T 1jmx_B 234 GYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLI--------KAAN----------- 292 (349)
T ss_dssp EEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEE--------EEEE-----------
T ss_pred eEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEE--------EEEc-----------
Confidence 11355677889 99999888 889999998876511 0000
Q ss_pred CCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCCcccCCCCccCCCCccc
Q 005352 588 WCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQL 649 (701)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~ 649 (701)
....+..++++|+ +..+++++.++.+.+|+.+....+..+
T Consensus 293 ------------------~~~~~~~~~~s~d----g~~l~~~~~~~~v~v~d~~~~~~~~~~ 332 (349)
T 1jmx_B 293 ------------------LDHTYYCVAFDKK----GDKLYLGGTFNDLAVFNPDTLEKVKNI 332 (349)
T ss_dssp ------------------CSSCCCEEEECSS----SSCEEEESBSSEEEEEETTTTEEEEEE
T ss_pred ------------------CCCCccceEECCC----CCEEEEecCCCeEEEEeccccceeeee
Confidence 0112345678887 555666677889999998887766554
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=5.1e-16 Score=179.78 Aligned_cols=198 Identities=9% Similarity=0.073 Sum_probs=143.6
Q ss_pred EEEEecCCeEEEEECCCcEEEEECCCCeeeeeecCCC----CeEEEEEeeCCCCEEEEEEc---------CCcEEEEeCC
Q 005352 359 DLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSN----YVTCVHFNPVDDNYFISGSI---------DGKVRIWAVL 425 (701)
Q Consensus 359 ~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~h~~----~V~~l~f~p~~~~~l~sgs~---------dg~v~iwd~~ 425 (701)
+++|+|++.++..+.|++|++||+.++++...+.+.. .+.+++|+| ++++|++++. ++.|++||+.
T Consensus 20 ~~~~s~dg~~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~Sp-Dg~~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQEYLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSP-DRQFVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSSEEEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECT-TSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCCeEEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECC-CCCeEEEEecCceeEEeecceEEEEEECC
Confidence 6799999966666679999999999999887776432 389999999 9999998876 6899999999
Q ss_pred CCcEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccC----CCC---------CCeeEE
Q 005352 426 SCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKK----APC---------KRITGF 492 (701)
Q Consensus 426 ~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~----~~~---------~~i~~l 492 (701)
+++.+........+..++|+|||+.|+.+. ++.|++|++.+++..... ...... .+. ....++
T Consensus 99 ~g~~~~~~~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~---~~~~~~~v~~g~~~~v~~ee~~~~~~~~ 174 (719)
T 1z68_A 99 NGEFVRGNELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQIT---FNGRENKIFNGIPDWVYEEEMLATKYAL 174 (719)
T ss_dssp TTEECCSSCCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECC---CCCBTTTEEESSCCHHHHHHTTCSSCCE
T ss_pred CCccccceecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEe---cCCCcCCeEcccccceeeeecccCcccE
Confidence 988732122235688999999999999885 789999999877543211 000000 000 122589
Q ss_pred EEecCCCCEEEEEECCC----------------------------------cEEEEeCCcccee----ee----cccCCC
Q 005352 493 QFLPQDSSKVMVSCADS----------------------------------QVRILQGPNVIGK----YK----GLRRSG 530 (701)
Q Consensus 493 ~~~p~~~~~l~~~s~dg----------------------------------~I~iwd~~~~~~~----~~----~~~~~~ 530 (701)
.|+| +++.|++++.|. .|++||+...... +. ...+..
T Consensus 175 ~wSP-DG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~ 253 (719)
T 1z68_A 175 WWSP-NGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDY 253 (719)
T ss_dssp EECT-TSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCE
T ss_pred EECC-CCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcc
Confidence 9999 788888887652 7889998765431 11 123667
Q ss_pred CeEEEEEecCCCEEEEEeCC----CcEEEEe----CCCCC
Q 005352 531 NQLSACFTSDGKHIVSAGED----SNVYMWN----CIGHE 562 (701)
Q Consensus 531 ~v~~l~~s~dg~~l~sgs~D----g~I~iWd----~~~~~ 562 (701)
.+..++|+||++++++.... ..|++|| +.+++
T Consensus 254 ~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~ 293 (719)
T 1z68_A 254 YFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWD 293 (719)
T ss_dssp EEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEE
T ss_pred eEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCc
Confidence 88999999998877775432 2488888 65554
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.67 E-value=3.6e-14 Score=149.61 Aligned_cols=270 Identities=11% Similarity=0.122 Sum_probs=172.0
Q ss_pred eeeecCcccccccccc----ceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEe-CCCcEEEEEeec
Q 005352 207 ERVRLNEEDAMFCSKV----QRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAG-DDGVVRLWQVVE 281 (701)
Q Consensus 207 ~~~~~~~~~~~~~~~d----~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs-~Dg~I~iWd~~~ 281 (701)
..+++++..+++++.+ +.|.+|+++.....+..+ ..+..+......+++ ++++|++++ .++.|.+|++..
T Consensus 55 l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~---~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~ 129 (361)
T 3scy_A 55 LIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLL---NTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQ 129 (361)
T ss_dssp EEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEE---EEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCT
T ss_pred EEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEe---eEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCC
Confidence 4556666667776654 799999986542222211 223345667788888 888887776 578999999976
Q ss_pred CeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEE
Q 005352 282 DERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLS 361 (701)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~ 361 (701)
...+..... ...... ........+...+.+++
T Consensus 130 ~g~~~~~~~--------~~~~~g----------------------------------------~~~~~~~~~~~~~~~~~ 161 (361)
T 3scy_A 130 DGALLPASD--------VIEFKG----------------------------------------SGPDKERQTMPHLHCVR 161 (361)
T ss_dssp TSCBCSCSE--------EEECCC----------------------------------------CCSCTTTCSSCCEEEEE
T ss_pred CCcCcccce--------eEEccC----------------------------------------CCCCccccCCCcceEEE
Confidence 432211100 000000 00000012344578899
Q ss_pred EecCC-eEEEEE-CCCcEEEEECCCCee--------------eeeecCCCCeEEEEEeeCCCCEEEEEE-cCCcEEEEeC
Q 005352 362 WSKNN-YLLSAS-IDKTVRLWRVGNDHC--------------LRVFPHSNYVTCVHFNPVDDNYFISGS-IDGKVRIWAV 424 (701)
Q Consensus 362 ~s~~~-~l~s~s-~dg~I~iWd~~~~~~--------------~~~~~h~~~V~~l~f~p~~~~~l~sgs-~dg~v~iwd~ 424 (701)
|+|++ +|++++ .++.|.+|++..... .........+..++|+| +++++++++ .++.|.+|++
T Consensus 162 ~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~ 240 (361)
T 3scy_A 162 ITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNS-DGKFAYLINEIGGTVIAFRY 240 (361)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTCEEEEEEE
T ss_pred ECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcC-CCCEEEEEcCCCCeEEEEEe
Confidence 99999 565555 488999998875431 12233556788999999 998887777 6899999999
Q ss_pred CCCcEEEE--e----cCCCcEEEEEEeeCCCeEEEEecC--CcEEEEECC--CCeeeeeeeEEeecccCCCCCCeeEEEE
Q 005352 425 LSCHVVDW--V----DIRQIVTAVCYRPDGQGGIVGSMM--GDCRFYNVS--DNHLELDAEICVHSKKKAPCKRITGFQF 494 (701)
Q Consensus 425 ~~~~~~~~--~----~~~~~i~~i~~sp~g~~l~~gs~d--g~v~i~d~~--~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 494 (701)
.+++.... . .+...+..++|+|+|++|+++..+ +.|.+|++. ++.......+.. ...+.+++|
T Consensus 241 ~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-------g~~~~~~~~ 313 (361)
T 3scy_A 241 ADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-------GIHPRNFII 313 (361)
T ss_dssp ETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-------SSCCCEEEE
T ss_pred cCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-------CCCCceEEE
Confidence 87754322 1 122447899999999999777664 889999996 344322221111 245778999
Q ss_pred ecCCCCEEEEEE-CCCcEEEEeCC--ccceeeec-ccCCCCeEEEEEe
Q 005352 495 LPQDSSKVMVSC-ADSQVRILQGP--NVIGKYKG-LRRSGNQLSACFT 538 (701)
Q Consensus 495 ~p~~~~~l~~~s-~dg~I~iwd~~--~~~~~~~~-~~~~~~v~~l~~s 538 (701)
+| ++++|++++ .++.|.+|++. +....... ..+...+.|+.|.
T Consensus 314 sp-dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 314 TP-NGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp CT-TSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred CC-CCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 99 677777777 67899996543 43333222 1244578888885
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.67 E-value=1.4e-15 Score=176.59 Aligned_cols=250 Identities=10% Similarity=0.078 Sum_probs=166.7
Q ss_pred cEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCcc
Q 005352 252 SILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESA 331 (701)
Q Consensus 252 ~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (701)
...++.|+|||++|+++ |+.|++||+.+++....+..+..
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~-------------------------------------- 57 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTF-------------------------------------- 57 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTT--------------------------------------
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhh--------------------------------------
Confidence 35689999999999987 89999999988764322221100
Q ss_pred EEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECC---------CcEEEEECCCCeeeeeecCCCCeEEEE
Q 005352 332 CVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASID---------KTVRLWRVGNDHCLRVFPHSNYVTCVH 401 (701)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~d---------g~I~iWd~~~~~~~~~~~h~~~V~~l~ 401 (701)
..+.....+++|||++ +|+.++.+ +.+.+||+.++++.....+...+...+
T Consensus 58 -------------------~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~~ 118 (740)
T 4a5s_A 58 -------------------DEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVT 118 (740)
T ss_dssp -------------------TTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEE
T ss_pred -------------------hhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEcccCCCcceeeE
Confidence 0111233468899999 88887776 566799999999877666788899999
Q ss_pred EeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEec--CCCcE-----------------EEEEEeeCCCeEEEEecCC----
Q 005352 402 FNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVD--IRQIV-----------------TAVCYRPDGQGGIVGSMMG---- 458 (701)
Q Consensus 402 f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~--~~~~i-----------------~~i~~sp~g~~l~~gs~dg---- 458 (701)
|+| +++.|+.+. ++.|++|++.+++...+.. ....+ ..+.|+|||+.|+.++.|.
T Consensus 119 ~SP-dG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~ 196 (740)
T 4a5s_A 119 WSP-VGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVP 196 (740)
T ss_dssp ECS-STTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCC
T ss_pred ECC-CCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCc
Confidence 999 999998885 7899999999887654432 22222 3489999999999875432
Q ss_pred --------------------------------cEEEEECCC---CeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEE
Q 005352 459 --------------------------------DCRFYNVSD---NHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVM 503 (701)
Q Consensus 459 --------------------------------~v~i~d~~~---~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~ 503 (701)
.|++||+.+ +.......+........+...+..++|+| +++.++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wsp-dg~~~~ 275 (740)
T 4a5s_A 197 LIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWAT-QERISL 275 (740)
T ss_dssp EEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEE-TTEEEE
T ss_pred eEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeC-CCeEEE
Confidence 366677766 42100001110000012456688999999 566665
Q ss_pred EEEC----CCcEEEEeCCccc--------eeeecccCCCCeE-----EEEEecCCCEEE-EEeC-C--CcEEEEeCCCCC
Q 005352 504 VSCA----DSQVRILQGPNVI--------GKYKGLRRSGNQL-----SACFTSDGKHIV-SAGE-D--SNVYMWNCIGHE 562 (701)
Q Consensus 504 ~~s~----dg~I~iwd~~~~~--------~~~~~~~~~~~v~-----~l~~s~dg~~l~-sgs~-D--g~I~iWd~~~~~ 562 (701)
.... +..|++||..+.. ..+....+...+. ..+|+|||+.|+ ..+. + ..|++|++.+++
T Consensus 276 ~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~ 355 (740)
T 4a5s_A 276 QWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKD 355 (740)
T ss_dssp EEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSS
T ss_pred EEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCc
Confidence 5443 3369999976543 1111122444333 688999999877 6654 3 458888988765
Q ss_pred C
Q 005352 563 E 563 (701)
Q Consensus 563 ~ 563 (701)
.
T Consensus 356 ~ 356 (740)
T 4a5s_A 356 C 356 (740)
T ss_dssp C
T ss_pred e
Confidence 3
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.66 E-value=5.2e-15 Score=157.49 Aligned_cols=246 Identities=14% Similarity=0.088 Sum_probs=164.0
Q ss_pred eccCCCcEEE-----EEEccCCCEEEEEeC-CCc--EEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeecccc
Q 005352 246 IQAHDGSILT-----MKFSPDGQYLASAGD-DGV--VRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEK 317 (701)
Q Consensus 246 l~~H~~~I~~-----l~fspdg~~Lasgs~-Dg~--I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (701)
+..|.+.... .+|+|||++||.++. ++. |.+||+.+++...
T Consensus 26 lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~------------------------------- 74 (388)
T 3pe7_A 26 LTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ------------------------------- 74 (388)
T ss_dssp CSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE-------------------------------
T ss_pred ecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE-------------------------------
Confidence 4446655555 789999999999887 674 7777776664221
Q ss_pred ceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCC
Q 005352 318 ISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSN 395 (701)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~ 395 (701)
...+|...+..+.|+|++ .|+.++.++.|++||+.+++....+. +..
T Consensus 75 -------------------------------lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~ 123 (388)
T 3pe7_A 75 -------------------------------LTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAE 123 (388)
T ss_dssp -------------------------------CCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTT
T ss_pred -------------------------------eeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhh
Confidence 112344444466899999 89999999999999999998776665 334
Q ss_pred CeEEEE--EeeCCCCEEEEEE----------------------cCCcEEEEeCCCCcEEEEecCCCcEEEEEEee-CCCe
Q 005352 396 YVTCVH--FNPVDDNYFISGS----------------------IDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRP-DGQG 450 (701)
Q Consensus 396 ~V~~l~--f~p~~~~~l~sgs----------------------~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp-~g~~ 450 (701)
.+.... ++| ++.+++... .+..|.+||+.+++...+..+...+..++|+| +|+.
T Consensus 124 ~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~ 202 (388)
T 3pe7_A 124 WVGYGTWVANS-DCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDST 202 (388)
T ss_dssp EEEEEEEEECT-TSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEE
T ss_pred cccccceeECC-CCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECCCCCCE
Confidence 443343 477 888877432 34679999999998888777788899999999 9998
Q ss_pred EEEEecC------CcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEE-EECCC----cEEEEeCCcc
Q 005352 451 GIVGSMM------GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMV-SCADS----QVRILQGPNV 519 (701)
Q Consensus 451 l~~gs~d------g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~-~s~dg----~I~iwd~~~~ 519 (701)
|+..... ..|.++|+........ . .......+....|+| +++.|+. +..++ .|++||+.+.
T Consensus 203 l~~~~~~~~~~~~~~l~~~d~~~~~~~~l-----~--~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~~~g 274 (388)
T 3pe7_A 203 VAFCHEGPHDLVDARMWLINEDGTNMRKV-----K--THAEGESCTHEFWVP-DGSALVYVSYLKGSPDRFIYSADPETL 274 (388)
T ss_dssp EEEEECSCTTTSSCSEEEEETTSCCCEES-----C--CCCTTEEEEEEEECT-TSSCEEEEEEETTCCCEEEEEECTTTC
T ss_pred EEEEEecCCCCCcceEEEEeCCCCceEEe-----e--eCCCCcccccceECC-CCCEEEEEecCCCCCcceEEEEecCCC
Confidence 8877653 3788888776543211 0 011112477889999 5665544 33322 3999998754
Q ss_pred ceee--ecccCC---CCeEEEEEecCCCEEEEE---------eCCCcEEEEeCCCCC
Q 005352 520 IGKY--KGLRRS---GNQLSACFTSDGKHIVSA---------GEDSNVYMWNCIGHE 562 (701)
Q Consensus 520 ~~~~--~~~~~~---~~v~~l~~s~dg~~l~sg---------s~Dg~I~iWd~~~~~ 562 (701)
.... ....+. .....++|+|||++|+.. ..+..|++||+.+++
T Consensus 275 ~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~ 331 (388)
T 3pe7_A 275 ENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGT 331 (388)
T ss_dssp CEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTE
T ss_pred ceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCc
Confidence 4222 111100 001123699999988754 456789999998765
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.63 E-value=2.5e-14 Score=150.99 Aligned_cols=271 Identities=12% Similarity=0.098 Sum_probs=179.8
Q ss_pred ccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEe----------CCCcEEEEEeecCeeeeeecC
Q 005352 221 KVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAG----------DDGVVRLWQVVEDERLTEVDI 290 (701)
Q Consensus 221 ~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs----------~Dg~I~iWd~~~~~~~~~~~~ 290 (701)
.++.|.+||...... . ..+..+..+ .++|+|||++|+++. .++.|.+||+.+.+.+.++..
T Consensus 29 ~d~~v~v~D~~t~~~--~-----~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~ 99 (361)
T 2oiz_A 29 TESRVHVYDYTNGKF--L-----GMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISL 99 (361)
T ss_dssp GGCEEEEEETTTCCE--E-----EEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEE
T ss_pred ccCeEEEEECCCCeE--E-----EEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEc
Confidence 478999998643321 1 235555555 899999999999886 367899999887765544432
Q ss_pred CCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEE
Q 005352 291 PEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLL 369 (701)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~ 369 (701)
.... ..+......++++|++ +|+
T Consensus 100 ~~~~--------------------------------------------------------~~~g~~p~~i~~spdg~~l~ 123 (361)
T 2oiz_A 100 PPKR--------------------------------------------------------VQGLNYDGLFRQTTDGKFIV 123 (361)
T ss_dssp CTTB--------------------------------------------------------CCBCCCGGGEEECTTSSEEE
T ss_pred Cccc--------------------------------------------------------cccCCCcceEEECCCCCEEE
Confidence 1100 0022345678999999 777
Q ss_pred EEEC--CCcEEEEECCCCeeeee-ecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCC-CcEEEE------ecCCCcE
Q 005352 370 SASI--DKTVRLWRVGNDHCLRV-FPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS-CHVVDW------VDIRQIV 439 (701)
Q Consensus 370 s~s~--dg~I~iWd~~~~~~~~~-~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~-~~~~~~------~~~~~~i 439 (701)
++.. +++|.+||+.+++.+.. +..... ..+.+.|.....+++.+.||.+.+|++.. ++.... +......
T Consensus 124 v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~-~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~ 202 (361)
T 2oiz_A 124 LQNASPATSIGIVDVAKGDYVEDVTAAAGC-WSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDP 202 (361)
T ss_dssp EEEESSSEEEEEEETTTTEEEEEEGGGTTE-EEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSC
T ss_pred EECCCCCCeEEEEECCCCcEEEEEecCCCc-ceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCc
Confidence 7764 68999999999999888 765443 33567774457888999999999999865 554411 1111112
Q ss_pred EEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecc----cCCCCCCeeEEEEecCCCCEEEEEEC--------
Q 005352 440 TAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSK----KKAPCKRITGFQFLPQDSSKVMVSCA-------- 507 (701)
Q Consensus 440 ~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~----~~~~~~~i~~l~~~p~~~~~l~~~s~-------- 507 (701)
..+.+.|++..++..+.++.+.++|+..........+..... ..........++++| ++..++++..
T Consensus 203 ~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~-dg~~lyv~~~~~~~~~~~ 281 (361)
T 2oiz_A 203 IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHR-ASGRMYVFMHPDGKEGTH 281 (361)
T ss_dssp BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEET-TTTEEEEEEESSCCTTCT
T ss_pred eEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEec-CCCeEEEEEccCCCcccc
Confidence 233446788888888889999999997654332221111110 000001112368899 4455555432
Q ss_pred ---CCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 005352 508 ---DSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGH 561 (701)
Q Consensus 508 ---dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~ 561 (701)
.+.|.+||..+.........+. +.+++|+|+|++|++++. +.|.+||..++
T Consensus 282 ~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 282 KFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQP 335 (361)
T ss_dssp TCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred cCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCC
Confidence 3589999998766554443344 899999999999999887 99999999887
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=2.5e-14 Score=151.25 Aligned_cols=198 Identities=9% Similarity=0.102 Sum_probs=138.6
Q ss_pred cCeEEEEEecCC-eEEEEECCCcEEEEECC-CCeeeeeecC--CCCeEEEEEeeCCCCE--EEEEE-------------c
Q 005352 355 GEILDLSWSKNN-YLLSASIDKTVRLWRVG-NDHCLRVFPH--SNYVTCVHFNPVDDNY--FISGS-------------I 415 (701)
Q Consensus 355 ~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~-~~~~~~~~~h--~~~V~~l~f~p~~~~~--l~sgs-------------~ 415 (701)
..+..++|+|++ +|++++.+ .|.+|++. +++......+ .+.+.+++|+| ++++ ++++. .
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~ 117 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADT-NTRAIFLLAAKQPPYAVYANPFYKF 117 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESSS
T ss_pred CCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECC-CCCEEEEEEecCCcceeccceeecC
Confidence 457789999999 78888888 99999997 7776554432 23466789999 8884 44542 6
Q ss_pred CCcEEEEeCC-CCcEEEEe-----cCCCcEEEEEEeeCCCeEEEEec-CCcEEEEECC-CCeeeeeeeEEeecccCCCCC
Q 005352 416 DGKVRIWAVL-SCHVVDWV-----DIRQIVTAVCYRPDGQGGIVGSM-MGDCRFYNVS-DNHLELDAEICVHSKKKAPCK 487 (701)
Q Consensus 416 dg~v~iwd~~-~~~~~~~~-----~~~~~i~~i~~sp~g~~l~~gs~-dg~v~i~d~~-~~~~~~~~~~~~~~~~~~~~~ 487 (701)
++.+.+|++. .++..... .+...+..++|+|+|++++++.. ++.|++|++. +++......+. ...+..
T Consensus 118 ~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~----~~~~g~ 193 (365)
T 1jof_A 118 AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVD----APDPGD 193 (365)
T ss_dssp CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEE----CSSTTC
T ss_pred CceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEe----cCCCCC
Confidence 8999999997 45544322 24567999999999998887764 6799999998 56543211111 011235
Q ss_pred CeeEEEEecCCCCEEEEEEC-CCcEEEEeCC--ccce-----eeeccc-----CCC------CeEEEE-EecCCCEEEEE
Q 005352 488 RITGFQFLPQDSSKVMVSCA-DSQVRILQGP--NVIG-----KYKGLR-----RSG------NQLSAC-FTSDGKHIVSA 547 (701)
Q Consensus 488 ~i~~l~~~p~~~~~l~~~s~-dg~I~iwd~~--~~~~-----~~~~~~-----~~~------~v~~l~-~s~dg~~l~sg 547 (701)
.+..++|+| +++++++++. ++.|.+|+.. +... ...... +.. .+..++ |+|||++|+++
T Consensus 194 ~p~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~ 272 (365)
T 1jof_A 194 HPRWVAMHP-TGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFAS 272 (365)
T ss_dssp CEEEEEECT-TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEE
T ss_pred CCCEeEECC-CCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEE
Confidence 688999999 6777777765 7899999754 2221 111111 111 488999 99999998877
Q ss_pred eCCC------cEEEEeCC
Q 005352 548 GEDS------NVYMWNCI 559 (701)
Q Consensus 548 s~Dg------~I~iWd~~ 559 (701)
+.+. .|.+|+++
T Consensus 273 ~~~~~~~~~~~i~v~~~~ 290 (365)
T 1jof_A 273 SRANKFELQGYIAGFKLR 290 (365)
T ss_dssp EEESSTTSCCEEEEEEEC
T ss_pred CCCCCCCCCCeEEEEEEC
Confidence 5432 89999986
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=7.3e-13 Score=137.77 Aligned_cols=202 Identities=11% Similarity=0.064 Sum_probs=143.9
Q ss_pred CCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCe-eeeeec----------CCCCeEEEEEeeCCCCEEEEEE-cCCc
Q 005352 352 GHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDH-CLRVFP----------HSNYVTCVHFNPVDDNYFISGS-IDGK 418 (701)
Q Consensus 352 ~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~-~~~~~~----------h~~~V~~l~f~p~~~~~l~sgs-~dg~ 418 (701)
++......|++++++ ++++...++.|++||..... .+..+. +-..+..++++|.+++++++.+ .++.
T Consensus 88 ~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~ 167 (329)
T 3fvz_A 88 NLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSR 167 (329)
T ss_dssp TTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCE
T ss_pred CccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCe
Confidence 344578899999999 77777788999999986542 455442 2346899999985677777775 6899
Q ss_pred EEEEeCCCCcEEEEecC-----------CCcEEEEEEeeC-CCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCC
Q 005352 419 VRIWAVLSCHVVDWVDI-----------RQIVTAVCYRPD-GQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPC 486 (701)
Q Consensus 419 v~iwd~~~~~~~~~~~~-----------~~~i~~i~~sp~-g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~ 486 (701)
|++|| .+++.+..... -..+..++++|+ +..+++...++.|++|+..+++..... ......
T Consensus 168 I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~------~~~~~~ 240 (329)
T 3fvz_A 168 IVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREI------KHASFG 240 (329)
T ss_dssp EEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEE------CCTTTT
T ss_pred EEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEE------eccccC
Confidence 99999 45655544431 123889999998 677777778899999999866543221 112334
Q ss_pred CCeeEEEEecCCCCEEEEEE-------CCCcEEEEeCCccceeeec---ccCCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 005352 487 KRITGFQFLPQDSSKVMVSC-------ADSQVRILQGPNVIGKYKG---LRRSGNQLSACFTSDGKHIVSAGEDSNVYMW 556 (701)
Q Consensus 487 ~~i~~l~~~p~~~~~l~~~s-------~dg~I~iwd~~~~~~~~~~---~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iW 556 (701)
..+..+++.| +..+.+.+ .+..|++|+..+....... ..+...+..++++|+|.++++...++.|++|
T Consensus 241 ~~~~~~~~~p--g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~ 318 (329)
T 3fvz_A 241 RNVFAISYIP--GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKF 318 (329)
T ss_dssp TCEEEEEEET--TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEE
T ss_pred CCcceeeecC--CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEE
Confidence 5677888888 33333332 3458999998755443332 2356678999999999888888899999999
Q ss_pred eCCCCC
Q 005352 557 NCIGHE 562 (701)
Q Consensus 557 d~~~~~ 562 (701)
++....
T Consensus 319 ~~~~~~ 324 (329)
T 3fvz_A 319 TLTEKM 324 (329)
T ss_dssp EEEECS
T ss_pred eCCccc
Confidence 987543
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.59 E-value=1.2e-13 Score=158.27 Aligned_cols=204 Identities=8% Similarity=-0.005 Sum_probs=136.4
Q ss_pred CccCeEEEEEecCC-eEEEEECC----------CcEEEEECCC------Ceeeeee-cCCCCeEEEEEeeCCCCEEEEEE
Q 005352 353 HSGEILDLSWSKNN-YLLSASID----------KTVRLWRVGN------DHCLRVF-PHSNYVTCVHFNPVDDNYFISGS 414 (701)
Q Consensus 353 h~~~I~~l~~s~~~-~l~s~s~d----------g~I~iWd~~~------~~~~~~~-~h~~~V~~l~f~p~~~~~l~sgs 414 (701)
|...+..++|+|+| .|++++.+ ..|++||+.+ ++..... .+...+..++|+| ++++|+.++
T Consensus 128 ~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Sp-DG~~la~~~ 206 (662)
T 3azo_A 128 GGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSP-DGRQAVWLA 206 (662)
T ss_dssp TCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECT-TSSEEEEEE
T ss_pred CCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECC-CCCEEEEEE
Confidence 56678899999999 88888776 5899999988 6665555 5667788899999 999999887
Q ss_pred cCC--------cEEEEeCC-CC---cEEEEec-CCCcEEEEEEeeCCCeEEEEecCC--cEEEEECCCCeeeeeeeEEee
Q 005352 415 IDG--------KVRIWAVL-SC---HVVDWVD-IRQIVTAVCYRPDGQGGIVGSMMG--DCRFYNVSDNHLELDAEICVH 479 (701)
Q Consensus 415 ~dg--------~v~iwd~~-~~---~~~~~~~-~~~~i~~i~~sp~g~~l~~gs~dg--~v~i~d~~~~~~~~~~~~~~~ 479 (701)
.++ .|++||+. ++ +...+.. +...+..++|+|||+.++++..++ .|.+||+.+++...... ..
T Consensus 207 ~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~--~~ 284 (662)
T 3azo_A 207 WDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCR--RE 284 (662)
T ss_dssp ECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSC--CS
T ss_pred CCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeeccc--cc
Confidence 553 79999998 56 4444444 367899999999999888888888 56666665554322111 00
Q ss_pred cccCC--CCCCeeEEEEecCCCCEEEEEECCCcEEEE--eCCccceeeecccCCCCeEEE-EEecCCCEEEEEeCCC--c
Q 005352 480 SKKKA--PCKRITGFQFLPQDSSKVMVSCADSQVRIL--QGPNVIGKYKGLRRSGNQLSA-CFTSDGKHIVSAGEDS--N 552 (701)
Q Consensus 480 ~~~~~--~~~~i~~l~~~p~~~~~l~~~s~dg~I~iw--d~~~~~~~~~~~~~~~~v~~l-~~s~dg~~l~sgs~Dg--~ 552 (701)
..... -...+..++|+| ++.+++++.. +.++|| |..... ......+...+..+ +++.+.-++++++.+. .
T Consensus 285 ~~~~~p~w~~~~~~~~~~~-~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 361 (662)
T 3azo_A 285 EEFAGPLWTPGMRWFAPLA-NGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYE 361 (662)
T ss_dssp SBSSCCCCSTTCCSEEECT-TSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEEEEEEETTEEEEEEEETTEEEE
T ss_pred ccccCccccccCceEeEeC-CCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCE
Confidence 00000 001145688888 6788888888 999998 544322 22223355566666 4443333444555554 4
Q ss_pred EEEEeCCCCC
Q 005352 553 VYMWNCIGHE 562 (701)
Q Consensus 553 I~iWd~~~~~ 562 (701)
|++|++.+++
T Consensus 362 i~~~d~~~g~ 371 (662)
T 3azo_A 362 VVELDTVTGR 371 (662)
T ss_dssp EEEEETTTCC
T ss_pred EEEEECCCCc
Confidence 6666766665
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.58 E-value=1.8e-12 Score=134.80 Aligned_cols=269 Identities=10% Similarity=0.038 Sum_probs=175.8
Q ss_pred eeeecCc--cccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCee
Q 005352 207 ERVRLNE--EDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDER 284 (701)
Q Consensus 207 ~~~~~~~--~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~ 284 (701)
..+.++. ..++..+.++.+++|.-. . ...+..+...+.+++|+|+|++++++..++.|.+||..+++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~------~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~ 78 (333)
T 2dg1_A 9 PTLFYSGKSNSAVPIISESELQTITAE----P------WLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEI 78 (333)
T ss_dssp CBCCSCGGGGCSSCCCCGGGSCEEECE----E------EEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCE
T ss_pred ceeeecCCccceeEEeecccCcccccc----e------eEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcE
Confidence 3444443 344445677888888311 1 123455667789999999999888888899999999876542
Q ss_pred eeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEec
Q 005352 285 LTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSK 364 (701)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~ 364 (701)
.. ....+...+.++++++
T Consensus 79 ~~--------------------------------------------------------------~~~~~~~~~~~i~~~~ 96 (333)
T 2dg1_A 79 KR--------------------------------------------------------------PFVSHKANPAAIKIHK 96 (333)
T ss_dssp EE--------------------------------------------------------------EEECSSSSEEEEEECT
T ss_pred EE--------------------------------------------------------------EeeCCCCCcceEEECC
Confidence 11 1112456789999999
Q ss_pred CC-eEEEEECC----CcEEEEECCCCeeeeeec---CCCCeEEEEEeeCCCCEEEEEEc------CCcEEEEeCCCCcEE
Q 005352 365 NN-YLLSASID----KTVRLWRVGNDHCLRVFP---HSNYVTCVHFNPVDDNYFISGSI------DGKVRIWAVLSCHVV 430 (701)
Q Consensus 365 ~~-~l~s~s~d----g~I~iWd~~~~~~~~~~~---h~~~V~~l~f~p~~~~~l~sgs~------dg~v~iwd~~~~~~~ 430 (701)
++ ++++...+ +.|.+||..++.....+. +...+.+++++| +++++++... .+.|..+|..+++..
T Consensus 97 dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~ 175 (333)
T 2dg1_A 97 DGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVT 175 (333)
T ss_dssp TSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTSCCEE
T ss_pred CCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECC-CCCEEEEeccccccCCCceEEEEeCCCCEEE
Confidence 99 55555555 589999998876653332 446799999999 8887776653 356777777666655
Q ss_pred EEecCCCcEEEEEEeeCCCeEEEE-ecCCcEEEEECCCC-eeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECC
Q 005352 431 DWVDIRQIVTAVCYRPDGQGGIVG-SMMGDCRFYNVSDN-HLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD 508 (701)
Q Consensus 431 ~~~~~~~~i~~i~~sp~g~~l~~g-s~dg~v~i~d~~~~-~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~d 508 (701)
........+..++|+|+++.++++ +.++.|.+|++.+. ............... ....+.++++.+ ++.++++...+
T Consensus 176 ~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~-~~~~~~~i~~d~-~G~l~v~~~~~ 253 (333)
T 2dg1_A 176 PIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFT-GHEGPDSCCIDS-DDNLYVAMYGQ 253 (333)
T ss_dssp EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECC-SSSEEEEEEEBT-TCCEEEEEETT
T ss_pred EeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecC-CCCCCCceEECC-CCCEEEEEcCC
Confidence 544444568899999999866554 56789999999642 211110000000011 114577899998 67777777788
Q ss_pred CcEEEEeCCcc-ceeeeccc----CCCCeEEEEEecCCCEEEEEeCC
Q 005352 509 SQVRILQGPNV-IGKYKGLR----RSGNQLSACFTSDGKHIVSAGED 550 (701)
Q Consensus 509 g~I~iwd~~~~-~~~~~~~~----~~~~v~~l~~s~dg~~l~sgs~D 550 (701)
+.|.+||.... ...+.... +...+.+++|+|+++.|+.++.+
T Consensus 254 ~~v~~~d~~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 254 GRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp TEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred CEEEEECCCCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 99999997532 12222211 11268899999998777666554
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.58 E-value=1.6e-13 Score=159.27 Aligned_cols=265 Identities=8% Similarity=0.075 Sum_probs=164.8
Q ss_pred eeecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCC---------CcEEEEE
Q 005352 208 RVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDD---------GVVRLWQ 278 (701)
Q Consensus 208 ~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D---------g~I~iWd 278 (701)
...+++..++.+ ++.|++|+....... .+.....+..+......+.|||||++|+.++.+ +.+.+||
T Consensus 23 ~w~~dg~~~~~~--~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d 98 (740)
T 4a5s_A 23 RWISDHEYLYKQ--ENNILVFNAEYGNSS--VFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD 98 (740)
T ss_dssp EECSSSEEEEEE--TTEEEEEETTTCCEE--EEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred EECCCCcEEEEc--CCcEEEEECCCCceE--EEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEE
Confidence 344444444443 899999998654321 122221222222234558899999999999886 5567999
Q ss_pred eecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeE
Q 005352 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEIL 358 (701)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~ 358 (701)
+.+++.. .+..|...+.
T Consensus 99 ~~~~~~~---------------------------------------------------------------~l~~~~~~~~ 115 (740)
T 4a5s_A 99 LNKRQLI---------------------------------------------------------------TEERIPNNTQ 115 (740)
T ss_dssp TTTTEEC---------------------------------------------------------------CSSCCCTTEE
T ss_pred CCCCcEE---------------------------------------------------------------EcccCCCcce
Confidence 9887521 1234667899
Q ss_pred EEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec--CCCCe-----------------EEEEEeeCCCCEEEEEEcCC-
Q 005352 359 DLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP--HSNYV-----------------TCVHFNPVDDNYFISGSIDG- 417 (701)
Q Consensus 359 ~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~--h~~~V-----------------~~l~f~p~~~~~l~sgs~dg- 417 (701)
..+|||+| .|+.+ .++.|++|++.+++..+... +...+ ..+.|+| |+++|+.++.|.
T Consensus 116 ~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSp-Dg~~la~~~~d~~ 193 (740)
T 4a5s_A 116 WVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSP-NGTFLAYAQFNDT 193 (740)
T ss_dssp EEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECT-TSSEEEEEEEECT
T ss_pred eeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECC-CCCEEEEEEEccc
Confidence 99999999 77766 57899999998887654332 22222 3589999 999999876332
Q ss_pred -----------------------------------cEEEEeCCC---C---cEEEEec------CCCcEEEEEEeeCCCe
Q 005352 418 -----------------------------------KVRIWAVLS---C---HVVDWVD------IRQIVTAVCYRPDGQG 450 (701)
Q Consensus 418 -----------------------------------~v~iwd~~~---~---~~~~~~~------~~~~i~~i~~sp~g~~ 450 (701)
.|++||+.+ + +...+.. +...+..++|+|||+.
T Consensus 194 ~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~ 273 (740)
T 4a5s_A 194 EVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERI 273 (740)
T ss_dssp TCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEE
T ss_pred CCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeE
Confidence 488899988 7 4444432 6667999999999997
Q ss_pred EEEEec----CCcEEEEECCCCe----eeeeeeEEeecccCCCCCC-----eeEEEEecCCCCEEE-EEEC-C--CcEEE
Q 005352 451 GIVGSM----MGDCRFYNVSDNH----LELDAEICVHSKKKAPCKR-----ITGFQFLPQDSSKVM-VSCA-D--SQVRI 513 (701)
Q Consensus 451 l~~gs~----dg~v~i~d~~~~~----~~~~~~~~~~~~~~~~~~~-----i~~l~~~p~~~~~l~-~~s~-d--g~I~i 513 (701)
++.... +..|.+||+.+++ +.....+.. ..+... .....|+| +++.|+ ..+. + ..|++
T Consensus 274 ~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~----~~~~~~v~~~~~~~p~fsp-DG~~l~~~~s~~~G~~~l~~ 348 (740)
T 4a5s_A 274 SLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIE----MSTTGWVGRFRPSEPHFTL-DGNSFYKIISNEEGYRHICY 348 (740)
T ss_dssp EEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEE----ECSSSCSSSSSCCCCEECT-TSSEEEEEEECTTSCEEEEE
T ss_pred EEEEeCCCCCEEEEEEEECCCCccccceeEEEEeee----ccCCceEccCcCCCceEcC-CCCEEEEEEEcCCCceEEEE
Confidence 666543 2369999998876 221111100 111122 23678999 566555 5554 3 45777
Q ss_pred EeCCccceeeecccCCCCeEEEEEecCCCEEEEEe
Q 005352 514 LQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAG 548 (701)
Q Consensus 514 wd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs 548 (701)
||.......... .....+..+. .++++.|+..+
T Consensus 349 ~~~~~~~~~~lT-~g~~~v~~~~-~~d~~~i~f~~ 381 (740)
T 4a5s_A 349 FQIDKKDCTFIT-KGTWEVIGIE-ALTSDYLYYIS 381 (740)
T ss_dssp EETTCSSCEESC-CSSSCEEEEE-EECSSEEEEEE
T ss_pred EECCCCceEecc-cCCEEEEEEE-EEeCCEEEEEE
Confidence 887654332222 2344555543 24566555443
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.56 E-value=1.9e-13 Score=156.58 Aligned_cols=244 Identities=11% Similarity=0.049 Sum_probs=165.3
Q ss_pred eeccCCCcEEEEEEccCCCEEEEE--eCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeE
Q 005352 245 EIQAHDGSILTMKFSPDGQYLASA--GDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (701)
Q Consensus 245 ~l~~H~~~I~~l~fspdg~~Lasg--s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (701)
.+.+|...|..++|++++.++++. +.++...||....+.....+
T Consensus 18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l---------------------------------- 63 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESA---------------------------------- 63 (662)
T ss_dssp HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEES----------------------------------
T ss_pred HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCccee----------------------------------
Confidence 456799999999999887777777 66889999997443222211
Q ss_pred EeeecCCccEEEcCCccccccCCCeEEEcCCccCeE---------EEEEe--cCC-e-EEEEEC-CCcEEEEECC--C-C
Q 005352 323 SLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEIL---------DLSWS--KNN-Y-LLSASI-DKTVRLWRVG--N-D 385 (701)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~---------~l~~s--~~~-~-l~s~s~-dg~I~iWd~~--~-~ 385 (701)
..|...+. ...|+ |++ . |+.++. +..|.+|++. . +
T Consensus 64 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~ 115 (662)
T 3azo_A 64 ----------------------------LPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGA 115 (662)
T ss_dssp ----------------------------SCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCC
T ss_pred ----------------------------CCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCC
Confidence 11222222 34555 888 6 665543 5567777765 3 4
Q ss_pred eeeeeec-----CCCCeEEEEEeeCCCCEEEEEEcC----------CcEEEEeCCC------CcEEEEe-cCCCcEEEEE
Q 005352 386 HCLRVFP-----HSNYVTCVHFNPVDDNYFISGSID----------GKVRIWAVLS------CHVVDWV-DIRQIVTAVC 443 (701)
Q Consensus 386 ~~~~~~~-----h~~~V~~l~f~p~~~~~l~sgs~d----------g~v~iwd~~~------~~~~~~~-~~~~~i~~i~ 443 (701)
+...... |...+..++|+| +++.|++++.+ ..|++||+.+ ++...+. .+...+..++
T Consensus 116 ~~~~l~~~~~~~~~~~~~~~~~sp-Dg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 194 (662)
T 3azo_A 116 VPRPLTPVSAVGGGLRWADPVLLP-ERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPR 194 (662)
T ss_dssp CCEECSCCCCSTTCEEEEEEEEET-TTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCE
T ss_pred CCEeccCCccCCCCccccCcEECC-CCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCce
Confidence 4333333 456789999999 99999988876 5899999998 6666666 5667788899
Q ss_pred EeeCCCeEEEEecCC--------cEEEEECC-CCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCC--cEE
Q 005352 444 YRPDGQGGIVGSMMG--------DCRFYNVS-DNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADS--QVR 512 (701)
Q Consensus 444 ~sp~g~~l~~gs~dg--------~v~i~d~~-~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg--~I~ 512 (701)
|+|||+.|+.++.++ .|++||+. ++.......+. ..+...+..+.|+| ++++++++..++ .|+
T Consensus 195 ~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~-----~~~~~~~~~~~~sp-dg~l~~~~~~~~~~~l~ 268 (662)
T 3azo_A 195 LSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLL-----GGPEEAIAQAEWAP-DGSLIVATDRTGWWNLH 268 (662)
T ss_dssp ECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEE-----EETTBCEEEEEECT-TSCEEEEECTTSSCEEE
T ss_pred ECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeC-----CCCCceEcceEECC-CCeEEEEECCCCCeEEE
Confidence 999999999887553 79999998 45211111111 11235688999999 566777777788 566
Q ss_pred EEeCCccceeeecccCCCC--------eEEEEEecCCCEEEEEeCCCcEEEEeC
Q 005352 513 ILQGPNVIGKYKGLRRSGN--------QLSACFTSDGKHIVSAGEDSNVYMWNC 558 (701)
Q Consensus 513 iwd~~~~~~~~~~~~~~~~--------v~~l~~s~dg~~l~sgs~Dg~I~iWd~ 558 (701)
+||............+... +..++|+|+++++++++. +.++||.+
T Consensus 269 ~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~ 321 (662)
T 3azo_A 269 RVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGIL 321 (662)
T ss_dssp EECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEE
T ss_pred EEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEE
Confidence 6675432211111111111 467899999999999999 99999944
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.56 E-value=7.5e-14 Score=148.65 Aligned_cols=292 Identities=11% Similarity=0.054 Sum_probs=174.8
Q ss_pred eeeecCccccccccc---cceEEEEEccCccchhhhcccCceeccCCCc-EEEEEEccCCCEEEEEeCCCcEEEEEeecC
Q 005352 207 ERVRLNEEDAMFCSK---VQRVKVYHCKKRSKELSALYKGQEIQAHDGS-ILTMKFSPDGQYLASAGDDGVVRLWQVVED 282 (701)
Q Consensus 207 ~~~~~~~~~~~~~~~---d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~-I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~ 282 (701)
..++++++.+++... +..|.+|+..... .. .+..+... ...+.|+|||++|+.++.++.|.+|++.++
T Consensus 41 ~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~--~~------~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~ 112 (396)
T 3c5m_A 41 KCFTQDGKKLLFAGDFDGNRNYYLLNLETQQ--AV------QLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETL 112 (396)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTTE--EE------ECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTC
T ss_pred CcCCCCCCEEEEEEecCCCceEEEEECCCCc--EE------EeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCC
Confidence 346677777766533 2356667654322 11 12222223 234789999999999999999999999877
Q ss_pred eeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEE
Q 005352 283 ERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSW 362 (701)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~ 362 (701)
+.......+.. +. .. +..+++.... ....+ ....+.|
T Consensus 113 ~~~~~~~~~~~------~~-------------~~-------------g~~l~~~~~~------~~~~~-----~~~~~~~ 149 (396)
T 3c5m_A 113 EEQVIYTVDEE------WK-------------GY-------------GTWVANSDCT------KLVGI-----EILKRDW 149 (396)
T ss_dssp CEEEEEECCTT------EE-------------EE-------------EEEEECTTSS------EEEEE-----EEEGGGC
T ss_pred CcEEEEecccc------cC-------------CC-------------CCEEEeccCC------ccccc-----ccccccc
Confidence 54332221110 00 00 0001110000 00000 0112357
Q ss_pred ecCC-eEEEE-----ECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcC------CcEEEEeCCCCcEE
Q 005352 363 SKNN-YLLSA-----SIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSID------GKVRIWAVLSCHVV 430 (701)
Q Consensus 363 s~~~-~l~s~-----s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~d------g~v~iwd~~~~~~~ 430 (701)
+|++ .++.+ ..+..|.+||+.+++......+...+..+.|+|.++..|+..+.+ ..|.+||+.+++..
T Consensus 150 spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~ 229 (396)
T 3c5m_A 150 QPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR 229 (396)
T ss_dssp CCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE
T ss_pred CCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee
Confidence 7887 44433 456789999999988877777778899999998446666665543 36889998776655
Q ss_pred EEecC--CCcEEEEEEeeCCCeEEEEecC-----CcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEE
Q 005352 431 DWVDI--RQIVTAVCYRPDGQGGIVGSMM-----GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVM 503 (701)
Q Consensus 431 ~~~~~--~~~i~~i~~sp~g~~l~~gs~d-----g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~ 503 (701)
.+..+ ...+..++|+|+|+.|+.++.+ +.|++||+.+++..... .. .... +.|+|.++.+++
T Consensus 230 ~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~-----~~-----~~~~-~~~s~~dg~~l~ 298 (396)
T 3c5m_A 230 KIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVM-----VM-----PPCS-HLMSNFDGSLMV 298 (396)
T ss_dssp ESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEE-----EC-----CSEE-EEEECSSSSEEE
T ss_pred EeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEee-----eC-----CCCC-CCccCCCCceEE
Confidence 44443 2358889999999988877554 44999999877643211 10 0123 788883455666
Q ss_pred EEE----------------CCCcEEEEeCCccce-eeecccCCC-----------CeEEEEEecCCCEEEEEeC-CCc--
Q 005352 504 VSC----------------ADSQVRILQGPNVIG-KYKGLRRSG-----------NQLSACFTSDGKHIVSAGE-DSN-- 552 (701)
Q Consensus 504 ~~s----------------~dg~I~iwd~~~~~~-~~~~~~~~~-----------~v~~l~~s~dg~~l~sgs~-Dg~-- 552 (701)
+++ .+..|++||...... .+.. +.. .+..++|+|+|++|+.++. ++.
T Consensus 299 ~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~ 376 (396)
T 3c5m_A 299 GDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCK--HSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPA 376 (396)
T ss_dssp EEECCC----------CCCCCCEEEEEETTTTBCCEEEE--CCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCE
T ss_pred EecCCcceeeccccccccCCCCcEEEEecccCceEEccC--CCCccccccccccCCCCCceEccCCCeEEEEecCCCCce
Confidence 654 347899999865432 2222 222 2566889999998887764 455
Q ss_pred EEEEeCCCCC
Q 005352 553 VYMWNCIGHE 562 (701)
Q Consensus 553 I~iWd~~~~~ 562 (701)
|+++++.++.
T Consensus 377 l~~~~~~~~~ 386 (396)
T 3c5m_A 377 IYIADVPESY 386 (396)
T ss_dssp EEEEECCTTC
T ss_pred EEEEEEcccc
Confidence 4444555554
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.4e-13 Score=155.31 Aligned_cols=282 Identities=11% Similarity=0.020 Sum_probs=178.9
Q ss_pred ecCccccccccccc---eEEEEEccCccchhhhcccCce-eccCCCcEEEEEEccCCCEEE-----EEeCCCcEEEEEee
Q 005352 210 RLNEEDAMFCSKVQ---RVKVYHCKKRSKELSALYKGQE-IQAHDGSILTMKFSPDGQYLA-----SAGDDGVVRLWQVV 280 (701)
Q Consensus 210 ~~~~~~~~~~~~d~---~v~vw~~~~~~~~~~~~~~~~~-l~~H~~~I~~l~fspdg~~La-----sgs~Dg~I~iWd~~ 280 (701)
.++++.++....++ .-.+|...........+..... -.+|...+..++|||||++|| .|+.+..|++||+.
T Consensus 76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~ 155 (695)
T 2bkl_A 76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD 155 (695)
T ss_dssp EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence 35566666544332 3555654322222111211111 135777899999999999999 45556789999998
Q ss_pred cCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEE
Q 005352 281 EDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDL 360 (701)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l 360 (701)
+++.+... .+... ....+
T Consensus 156 tg~~~~~~------------------------------------------------------------~~~~~--~~~~~ 173 (695)
T 2bkl_A 156 SGEWSKVD------------------------------------------------------------VIEGG--KYATP 173 (695)
T ss_dssp TCCBCSSC------------------------------------------------------------CBSCC--TTCCC
T ss_pred CCCCcCCc------------------------------------------------------------ccCcc--cccce
Confidence 87532000 00011 11568
Q ss_pred EEecCC-eEEEEECCCc-------------EEEEECCCCee--eeeec---CCCCeEEEEEeeCCCCEEEEEEcCC----
Q 005352 361 SWSKNN-YLLSASIDKT-------------VRLWRVGNDHC--LRVFP---HSNYVTCVHFNPVDDNYFISGSIDG---- 417 (701)
Q Consensus 361 ~~s~~~-~l~s~s~dg~-------------I~iWd~~~~~~--~~~~~---h~~~V~~l~f~p~~~~~l~sgs~dg---- 417 (701)
+|+|+| .|+.++.|.. |++|++.+++. ...+. +...+..+.|+| ++++|+.++.++
T Consensus 174 ~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~ 252 (695)
T 2bkl_A 174 KWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSR-DGKYLFVYILRGWSEN 252 (695)
T ss_dssp EECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECT-TSCCEEEEEEETTTEE
T ss_pred EEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECC-CCCEEEEEEeCCCCce
Confidence 999999 8888888776 99999998762 22332 446789999999 999888877666
Q ss_pred cEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEec----CCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEE
Q 005352 418 KVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSM----MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQ 493 (701)
Q Consensus 418 ~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~----dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 493 (701)
.|.+|+..+++...+..+...+....+ ++|. ++..+. ++.|.+||+.+.....-..+. .......+..+.
T Consensus 253 ~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~----~~~~~~~l~~~~ 326 (695)
T 2bkl_A 253 DVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIV----PEDSSASLLSVS 326 (695)
T ss_dssp EEEEECTTCSSCEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEE----CCCSSCEEEEEE
T ss_pred EEEEEcCCCCceEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEe----cCCCCCeEEEEE
Confidence 688887777766666666666666666 6777 555443 578999999765320000111 011134577788
Q ss_pred EecCCCCEEEEEECCCcEEEEeCC-ccceeeeccc-CCCCeEEEEEecCCCEEEEE----eCCCcEEEEeCCCCC
Q 005352 494 FLPQDSSKVMVSCADSQVRILQGP-NVIGKYKGLR-RSGNQLSACFTSDGKHIVSA----GEDSNVYMWNCIGHE 562 (701)
Q Consensus 494 ~~p~~~~~l~~~s~dg~I~iwd~~-~~~~~~~~~~-~~~~v~~l~~s~dg~~l~sg----s~Dg~I~iWd~~~~~ 562 (701)
+. ++.++++...|+..+||... .......... ....+..++++|+++.|+.. ...+.|++||+.+++
T Consensus 327 ~~--~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 327 IV--GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp EE--TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred EE--CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 87 46788888889988887543 1111111111 25667788899999877633 345789999998876
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.5e-12 Score=131.46 Aligned_cols=240 Identities=10% Similarity=0.015 Sum_probs=165.5
Q ss_pred eeccCCCcEEEEEEccCCC-EEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEE
Q 005352 245 EIQAHDGSILTMKFSPDGQ-YLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (701)
Q Consensus 245 ~l~~H~~~I~~l~fspdg~-~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (701)
.+..+.....+++|+|+|+ +++++..++.|..|+..++ .
T Consensus 22 ~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~-------------------------------------- 61 (296)
T 3e5z_A 22 RLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--L-------------------------------------- 61 (296)
T ss_dssp EEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--E--------------------------------------
T ss_pred EEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--e--------------------------------------
Confidence 3444566788999999998 7888888999999997654 1
Q ss_pred eeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-----CCCCe
Q 005352 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-----HSNYV 397 (701)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-----h~~~V 397 (701)
..+..+...+.++++++++ ++++...++.|.+||..+++...... ....+
T Consensus 62 ------------------------~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~ 117 (296)
T 3e5z_A 62 ------------------------SPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSP 117 (296)
T ss_dssp ------------------------EEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCC
T ss_pred ------------------------EEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCC
Confidence 1122345678899999999 55555556899999998887654432 12356
Q ss_pred EEEEEeeCCCCEEEEE----E-------------cCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecCCcE
Q 005352 398 TCVHFNPVDDNYFISG----S-------------IDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDC 460 (701)
Q Consensus 398 ~~l~f~p~~~~~l~sg----s-------------~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v 460 (701)
..++++| +++++++. . ..+.|..++.. ++..........+..++|+|+++.+++.+.++.|
T Consensus 118 ~~i~~d~-~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i 195 (296)
T 3e5z_A 118 NDVCLAP-DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNAT 195 (296)
T ss_dssp CCEEECT-TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEEEEECTTSCEEEEETTTTEE
T ss_pred CCEEECC-CCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCccEEECCCCCEEEEeCCCCeE
Confidence 7899999 89888873 2 13456666665 5655556666778999999999999777778999
Q ss_pred EEEECC-CCee-eeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEE-
Q 005352 461 RFYNVS-DNHL-ELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACF- 537 (701)
Q Consensus 461 ~i~d~~-~~~~-~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~- 537 (701)
.+|++. ++.+ .... . . . .....+.++++.+ ++.++++. ++.|.+||.... .......+.. +.+++|
T Consensus 196 ~~~~~~~~g~~~~~~~-~-~-~---~~~~~p~~i~~d~-~G~l~v~~--~~~v~~~~~~g~-~~~~~~~~~~-~~~~~f~ 264 (296)
T 3e5z_A 196 HRYCLNARGETEYQGV-H-F-T---VEPGKTDGLRVDA-GGLIWASA--GDGVHVLTPDGD-ELGRVLTPQT-TSNLCFG 264 (296)
T ss_dssp EEEEECSSSCEEEEEE-E-E-C---CSSSCCCSEEEBT-TSCEEEEE--TTEEEEECTTSC-EEEEEECSSC-CCEEEEE
T ss_pred EEEEECCCCcCcCCCe-E-e-e---CCCCCCCeEEECC-CCCEEEEc--CCeEEEECCCCC-EEEEEECCCC-ceeEEEE
Confidence 999997 3433 1111 1 1 1 1334567789998 56655555 889999998632 2222222444 889999
Q ss_pred ecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 538 TSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 538 s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
.|+++.|++++.+ .+.-++.++..
T Consensus 265 ~~d~~~L~v~t~~-~l~~~~~~~~~ 288 (296)
T 3e5z_A 265 GPEGRTLYMTVST-EFWSIETNVRG 288 (296)
T ss_dssp STTSCEEEEEETT-EEEEEECSCCB
T ss_pred CCCCCEEEEEcCC-eEEEEEccccc
Confidence 5899999888876 35555555443
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=2e-12 Score=149.26 Aligned_cols=245 Identities=9% Similarity=0.061 Sum_probs=167.0
Q ss_pred cCCCcEEEEEEccCCCEEEEEeCCC-----cEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeE
Q 005352 248 AHDGSILTMKFSPDGQYLASAGDDG-----VVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (701)
Q Consensus 248 ~H~~~I~~l~fspdg~~Lasgs~Dg-----~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (701)
+|...+..++|||||++||.+..++ .|++||+.+++....
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~----------------------------------- 166 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD----------------------------------- 166 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE-----------------------------------
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc-----------------------------------
Confidence 4556789999999999999776543 899999988763221
Q ss_pred EeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCc----------------EEEEECCCC
Q 005352 323 SLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKT----------------VRLWRVGND 385 (701)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~----------------I~iWd~~~~ 385 (701)
.+. ...+..++|+|++ .|+.++.++. |++|++.++
T Consensus 167 --------------------------~~~--~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~ 218 (710)
T 2xdw_A 167 --------------------------VLE--RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTD 218 (710)
T ss_dssp --------------------------EEE--EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSC
T ss_pred --------------------------ccc--CcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCC
Confidence 011 1125678999999 8888887766 999999887
Q ss_pred ee--eeeec---CCCCeEEEEEeeCCCCEEEEEEc-----CCcEEEEeCCC------C--cEEEEecCCCcEEEEEEeeC
Q 005352 386 HC--LRVFP---HSNYVTCVHFNPVDDNYFISGSI-----DGKVRIWAVLS------C--HVVDWVDIRQIVTAVCYRPD 447 (701)
Q Consensus 386 ~~--~~~~~---h~~~V~~l~f~p~~~~~l~sgs~-----dg~v~iwd~~~------~--~~~~~~~~~~~i~~i~~sp~ 447 (701)
+. ...+. +...+..+.|+| ++++|+.++. +..|++||+.+ + ....+..+...+.. .|+|+
T Consensus 219 ~~~~~~v~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~d 296 (710)
T 2xdw_A 219 QSEDILCAEFPDEPKWMGGAELSD-DGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNE 296 (710)
T ss_dssp GGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEE
T ss_pred cccceEEeccCCCCeEEEEEEEcC-CCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEecc
Confidence 63 22222 455688999999 9999888765 56899999976 4 34455555555544 48899
Q ss_pred CCeEEEEecC----CcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCc--EEEEeCCccce
Q 005352 448 GQGGIVGSMM----GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQ--VRILQGPNVIG 521 (701)
Q Consensus 448 g~~l~~gs~d----g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~--I~iwd~~~~~~ 521 (701)
|+.|+..+.. +.|.+||+.+.....-..+. . ......+..+.|.+ ++.++++...++. |++|+..+...
T Consensus 297 g~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~--~--~~~~~~~~~~~~~~-~~~lv~~~~~~g~~~l~~~~~~~g~~ 371 (710)
T 2xdw_A 297 GTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLV--P--EHEKDVLEWVACVR-SNFLVLCYLHDVKNTLQLHDLATGAL 371 (710)
T ss_dssp TTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE--C--CCSSCEEEEEEEET-TTEEEEEEEETTEEEEEEEETTTCCE
T ss_pred CCEEEEEECCCCCCCEEEEEeCCCCCcccceecc--C--CCCCCeEEEEEEEc-CCEEEEEEEECCEEEEEEEECCCCCE
Confidence 9988877653 35999999875310000111 1 11113577888886 6678888888875 56677643332
Q ss_pred eeecccCCCCeEEEEEecCCCEEEEE-e---CCCcEEEEeCCCCC
Q 005352 522 KYKGLRRSGNQLSACFTSDGKHIVSA-G---EDSNVYMWNCIGHE 562 (701)
Q Consensus 522 ~~~~~~~~~~v~~l~~s~dg~~l~sg-s---~Dg~I~iWd~~~~~ 562 (701)
......+...+..++++|++..|+.. + ..+.|++||+.+++
T Consensus 372 ~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 372 LKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 22222246778889999999766533 2 45789999998876
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.52 E-value=6.6e-12 Score=130.47 Aligned_cols=266 Identities=8% Similarity=-0.041 Sum_probs=180.1
Q ss_pred ccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCcee
Q 005352 219 CSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCI 298 (701)
Q Consensus 219 ~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~ 298 (701)
++.++.|.++|........ ..+....-+........|.+. ++++.++...++.|.+||..+++.+.++
T Consensus 13 g~~~~~l~~~d~~t~~~~~-~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i---------- 80 (328)
T 3dsm_A 13 QYSNATLSYYDPATCEVEN-EVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRI---------- 80 (328)
T ss_dssp TSCCBEEEEEETTTTEEEC-SHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEE----------
T ss_pred CCCCceEEEEECCCCEEhh-hhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEc----------
Confidence 4558899999976433211 111000001122446778874 4555666666899999999887644322
Q ss_pred EEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCCeEEEEE-CCCcE
Q 005352 299 YFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSAS-IDKTV 377 (701)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~l~s~s-~dg~I 377 (701)
. .......+++++++.++.+. .++.|
T Consensus 81 ----------------------------------------------------~-~~~~p~~i~~~~~g~lyv~~~~~~~v 107 (328)
T 3dsm_A 81 ----------------------------------------------------T-GFTSPRYIHFLSDEKAYVTQIWDYRI 107 (328)
T ss_dssp ----------------------------------------------------E-CCSSEEEEEEEETTEEEEEEBSCSEE
T ss_pred ----------------------------------------------------C-CCCCCcEEEEeCCCeEEEEECCCCeE
Confidence 1 22456788998888555555 89999
Q ss_pred EEEECCCCeeeeeecCCC------CeEEEEEeeCCCCEEEEEE-cCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCe
Q 005352 378 RLWRVGNDHCLRVFPHSN------YVTCVHFNPVDDNYFISGS-IDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQG 450 (701)
Q Consensus 378 ~iWd~~~~~~~~~~~h~~------~V~~l~f~p~~~~~l~sgs-~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~ 450 (701)
.+||..+++....+.... ....+++ . ++.++++.. .++.|.++|+.+++++..+........++++|+|+.
T Consensus 108 ~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l 185 (328)
T 3dsm_A 108 FIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKM 185 (328)
T ss_dssp EEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEE
T ss_pred EEEECCCCeEEEEEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCE
Confidence 999999999887776443 6677887 3 555555544 488999999999988877666666788999999987
Q ss_pred EEEEecC----------CcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccc
Q 005352 451 GIVGSMM----------GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVI 520 (701)
Q Consensus 451 l~~gs~d----------g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~ 520 (701)
++++..+ +.|.++|..+.+..... .. ........++++| ++..++++.. .|.+||..+..
T Consensus 186 ~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~--~~-----~~g~~p~~la~~~-d~~~lyv~~~--~v~~~d~~t~~ 255 (328)
T 3dsm_A 186 WTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQF--KF-----KLGDWPSEVQLNG-TRDTLYWINN--DIWRMPVEADR 255 (328)
T ss_dssp EEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEE--EC-----CTTCCCEEEEECT-TSCEEEEESS--SEEEEETTCSS
T ss_pred EEEECCCccCCccccCCceEEEEECCCCeEEEEE--ec-----CCCCCceeEEEec-CCCEEEEEcc--EEEEEECCCCc
Confidence 6666554 78999999887654221 11 1123578999999 5666666654 89999987544
Q ss_pred eeeec-cc-CCCCeEEEEEec-CCCEEEEE----eCCCcEEEEeCCCCC
Q 005352 521 GKYKG-LR-RSGNQLSACFTS-DGKHIVSA----GEDSNVYMWNCIGHE 562 (701)
Q Consensus 521 ~~~~~-~~-~~~~v~~l~~s~-dg~~l~sg----s~Dg~I~iWd~~~~~ 562 (701)
..... .. .......++++| ++.++++. ..++.|.+|+.+ ++
T Consensus 256 ~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~ 303 (328)
T 3dsm_A 256 VPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GK 303 (328)
T ss_dssp CCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CC
T ss_pred eeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CC
Confidence 32111 11 145788999999 55666666 578999999987 54
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.6e-12 Score=134.26 Aligned_cols=239 Identities=10% Similarity=0.051 Sum_probs=156.1
Q ss_pred cceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCC---Cc--EEEEEeecCeeeeeecCCCCCCc
Q 005352 222 VQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDD---GV--VRLWQVVEDERLTEVDIPEIDPS 296 (701)
Q Consensus 222 d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~D---g~--I~iWd~~~~~~~~~~~~~~~~~~ 296 (701)
++.|.+|+...... ..+ ..+..++|||||++||.++.+ +. |.+|++.+++..
T Consensus 42 ~~~l~~~d~~~~~~--------~~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~----------- 98 (347)
T 2gop_A 42 ENTIVIENLKNNAR--------RFI----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSK----------- 98 (347)
T ss_dssp EEEEEEEETTTCCE--------EEE----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEE-----------
T ss_pred cceEEEEeCCCCce--------EEc----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceE-----------
Confidence 56788887654321 112 457889999999999988764 34 666666554321
Q ss_pred eeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEEC--
Q 005352 297 CIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASI-- 373 (701)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~-- 373 (701)
.+..+.. +..++|+|++ .|+.++.
T Consensus 99 ----------------------------------------------------~l~~~~~-~~~~~wspdg~~l~~~~~~~ 125 (347)
T 2gop_A 99 ----------------------------------------------------KILEAKN-IRSLEWNEDSRKLLIVGFKR 125 (347)
T ss_dssp ----------------------------------------------------EEEEESE-EEEEEECTTSSEEEEEEECC
T ss_pred ----------------------------------------------------EEEcCCC-ccceeECCCCCEEEEEEccC
Confidence 1111223 8889999998 6666653
Q ss_pred -------------------------CCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCC-------cEEE
Q 005352 374 -------------------------DKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDG-------KVRI 421 (701)
Q Consensus 374 -------------------------dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg-------~v~i 421 (701)
...|.+||+.+++.+..+... .+..++|+| ++ +++++..++ ...|
T Consensus 126 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~-~~~~~~~sp-dg-~~~~~~~~~~~~~~~~~~~l 202 (347)
T 2gop_A 126 REDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKP-RFSSGIWHR-DK-IVVNVPHREIIPQYFKFWDI 202 (347)
T ss_dssp CC---------CCCC---------CEEEEEEEETTTTEEEEEEEEE-TTCEEEEET-TE-EEEEEECCCSSCCSSCCEEE
T ss_pred CCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecCC-CcccccCCC-Ce-EEEEEecccccccccccccE
Confidence 257999999998873444333 788999999 88 777776542 3344
Q ss_pred EeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecC--------CcEEEEECCCCeeeeeeeEEeecccCCCCCCeeE-E
Q 005352 422 WAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMM--------GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITG-F 492 (701)
Q Consensus 422 wd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~d--------g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~-l 492 (701)
|.+.+++...+..+ ..+..+ +|+|+.|+.++.+ ..|.+|| +++... ....+...+.. +
T Consensus 203 ~~~d~~~~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~--------l~~~~~~~~~~~~ 269 (347)
T 2gop_A 203 YIWEDGKEEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMG--------ILDEVDRGVGQAK 269 (347)
T ss_dssp EEEETTEEEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEE--------SSTTCCSEEEEEE
T ss_pred EEeCCCceEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEe--------ccccCCcccCCcc
Confidence 44436665555544 455544 9999999887754 3577777 333211 12223456775 8
Q ss_pred EEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcE-EEEeCC
Q 005352 493 QFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNV-YMWNCI 559 (701)
Q Consensus 493 ~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I-~iWd~~ 559 (701)
.|+ ++ ++++++.++.++|| +.+.. ......+...|.+++|+| .++++++.++.. .||.++
T Consensus 270 ~~s--dg-~~~~~~~~~~~~l~-~~~g~-~~~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 270 IKD--GK-VYFTLFEEGSVNLY-IWDGE-IKPIAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EET--TE-EEEEEEETTEEEEE-EESSS-EEEEECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred EEc--Cc-EEEEEecCCcEEEE-EcCCc-eEEEecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 887 45 88888999999999 76322 222233567889999999 677888777765 777765
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.51 E-value=2e-13 Score=145.22 Aligned_cols=192 Identities=10% Similarity=0.028 Sum_probs=130.4
Q ss_pred EEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEE-------------------EEEeeCCCCEEEEE----
Q 005352 359 DLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTC-------------------VHFNPVDDNYFISG---- 413 (701)
Q Consensus 359 ~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~-------------------l~f~p~~~~~l~sg---- 413 (701)
.+.|+|++ +|+.++.++.|++||+.+++....+. +...... +.|+| +++.++..
T Consensus 85 ~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~sp-dg~~~~~~~~~~ 163 (396)
T 3c5m_A 85 GGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQP-LTSWEKFAEFYH 163 (396)
T ss_dssp TCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCC-CCSHHHHHHHHH
T ss_pred cceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCC-CCcceeeeeecc
Confidence 36899999 89899999999999999887766655 3332222 23455 55555433
Q ss_pred -EcCCcEEEEeCCCCcEEEEecCCCcEEEEEEee-CCCeEEEEecC------CcEEEEECCCCeeeeeeeEEeecccCCC
Q 005352 414 -SIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRP-DGQGGIVGSMM------GDCRFYNVSDNHLELDAEICVHSKKKAP 485 (701)
Q Consensus 414 -s~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp-~g~~l~~gs~d------g~v~i~d~~~~~~~~~~~~~~~~~~~~~ 485 (701)
..+..|.+||+.+++......+...+..+.|+| +++.|+..+.+ ..|.+|++........ . ....
T Consensus 164 ~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l-----~--~~~~ 236 (396)
T 3c5m_A 164 TNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKI-----K--EHAE 236 (396)
T ss_dssp TCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEES-----S--CCCT
T ss_pred CCCcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEe-----e--ccCC
Confidence 345689999999988877777778899999999 78877766543 3588888876542211 0 1111
Q ss_pred CCCeeEEEEecCCCCEEEEEECC-----CcEEEEeCCccceeeecccCCCCeEEEEEec-CCCEEEEEe-----------
Q 005352 486 CKRITGFQFLPQDSSKVMVSCAD-----SQVRILQGPNVIGKYKGLRRSGNQLSACFTS-DGKHIVSAG----------- 548 (701)
Q Consensus 486 ~~~i~~l~~~p~~~~~l~~~s~d-----g~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~-dg~~l~sgs----------- 548 (701)
...+..+.|+| +++.|+.++.+ +.|++||+.+........ .. ... +.|+| +|++|++++
T Consensus 237 ~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~ 312 (396)
T 3c5m_A 237 GESCTHEFWIP-DGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV-MP-PCS-HLMSNFDGSLMVGDGCDAPVDVADAD 312 (396)
T ss_dssp TEEEEEEEECT-TSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE-CC-SEE-EEEECSSSSEEEEEECCC--------
T ss_pred CccccceEECC-CCCEEEEEecCCCCccceEEEEECCCCCeEEeee-CC-CCC-CCccCCCCceEEEecCCcceeecccc
Confidence 23577889999 56666655443 449999987543322111 11 233 89999 999888765
Q ss_pred -----CCCcEEEEeCCCCC
Q 005352 549 -----EDSNVYMWNCIGHE 562 (701)
Q Consensus 549 -----~Dg~I~iWd~~~~~ 562 (701)
.++.|++||+.+++
T Consensus 313 ~~~~~~~~~i~~~d~~~~~ 331 (396)
T 3c5m_A 313 SYNIENDPFLYVLNTKAKS 331 (396)
T ss_dssp --CCCCCCEEEEEETTTTB
T ss_pred ccccCCCCcEEEEecccCc
Confidence 34789999998765
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.49 E-value=5.6e-12 Score=126.62 Aligned_cols=239 Identities=11% Similarity=0.012 Sum_probs=167.3
Q ss_pred cEEEEEEccCCCEEE-EEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCc
Q 005352 252 SILTMKFSPDGQYLA-SAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSES 330 (701)
Q Consensus 252 ~I~~l~fspdg~~La-sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (701)
...+|+++++|++++ +...++.|.+|+..+..... +
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~-~------------------------------------------ 61 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV-L------------------------------------------ 61 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EE-C------------------------------------------
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccce-E------------------------------------------
Confidence 678999999999777 54678899999865432100 0
Q ss_pred cEEEcCCccccccCCCeEEEcCCccCeEEEEEecCCeEEEEECCCcEEEEECCCCeeeeee-cCCCCeEEEEEeeCCCCE
Q 005352 331 ACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVF-PHSNYVTCVHFNPVDDNY 409 (701)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~-~h~~~V~~l~f~p~~~~~ 409 (701)
...+...+.++++.+++.|+.+..++.|.+||.......... .....+.++++.| ++++
T Consensus 62 -------------------~~~~~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~-~g~l 121 (270)
T 1rwi_B 62 -------------------PFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDT-QGAV 121 (270)
T ss_dssp -------------------CCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCCSCSSEEEEEECT-TCCE
T ss_pred -------------------eeCCcCCcceeEECCCCCEEEEcCCCEEEEEeCCCceEeeeecCCcCCCcceEECC-CCCE
Confidence 011223567889999884444444889999998765443222 2336789999999 8888
Q ss_pred EEEEEcCCcEEEEeCCCCcEEEEe-cCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCC
Q 005352 410 FISGSIDGKVRIWAVLSCHVVDWV-DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKR 488 (701)
Q Consensus 410 l~sgs~dg~v~iwd~~~~~~~~~~-~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 488 (701)
+++...++.|.+|+..+....... .....+..++++|+|+.+++...++.|.+|+......... .......
T Consensus 122 ~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~--------~~~~~~~ 193 (270)
T 1rwi_B 122 YVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVL--------PFTDITA 193 (270)
T ss_dssp EEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEEC--------CCSSCCS
T ss_pred EEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEee--------cccCCCC
Confidence 887777889999987655433221 2234678899999998777777788999999887653211 1112256
Q ss_pred eeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 489 ITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 489 i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
+.++++.+ ++.++++...++.|.+|+............+...+.+++++++|+++++...++.|+++++...+
T Consensus 194 p~~i~~d~-~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 194 PWGIAVDE-AGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp EEEEEECT-TCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred ceEEEECC-CCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence 88999998 56777777778999999987544333222234578999999999988898999999999987654
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=2.2e-11 Score=123.57 Aligned_cols=231 Identities=10% Similarity=0.098 Sum_probs=153.7
Q ss_pred CccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEE-ccCCCEEEEEeC-CCcEEEEEeecCeeeeeec
Q 005352 212 NEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKF-SPDGQYLASAGD-DGVVRLWQVVEDERLTEVD 289 (701)
Q Consensus 212 ~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~f-spdg~~Lasgs~-Dg~I~iWd~~~~~~~~~~~ 289 (701)
++...++...++.|.+|+..... .........-.+|...+.++++ .+++.++++... ++.|.+|+ .+++.+..+.
T Consensus 40 ~g~l~v~~~~~~~i~~~d~~g~~--~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~ 116 (286)
T 1q7f_A 40 QNDIIVADTNNHRIQIFDKEGRF--KFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFG 116 (286)
T ss_dssp TCCEEEEEGGGTEEEEECTTSCE--EEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEEC
T ss_pred CCCEEEEECCCCEEEEECCCCcE--EEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEec
Confidence 33334445678899999865221 1111110011245567999999 577777666643 78999999 4443222111
Q ss_pred CCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eE
Q 005352 290 IPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YL 368 (701)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l 368 (701)
..+...+.++++.+++ .+
T Consensus 117 -------------------------------------------------------------~~~~~~~~~i~~~~~g~l~ 135 (286)
T 1q7f_A 117 -------------------------------------------------------------ATILQHPRGVTVDNKGRII 135 (286)
T ss_dssp -------------------------------------------------------------TTTCSCEEEEEECTTSCEE
T ss_pred -------------------------------------------------------------CccCCCceEEEEeCCCCEE
Confidence 1233467899999998 66
Q ss_pred EEEECCCcEEEEECCCCeeeeeec---CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecC---CCcEEEE
Q 005352 369 LSASIDKTVRLWRVGNDHCLRVFP---HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDI---RQIVTAV 442 (701)
Q Consensus 369 ~s~s~dg~I~iWd~~~~~~~~~~~---h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~---~~~i~~i 442 (701)
++...++.|.+||.. ++.+..+. +...+.+++++| +++++++...++.|++||... +.+..+.. ...+..+
T Consensus 136 v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~g-~~~~~~~~~g~~~~p~~i 212 (286)
T 1q7f_A 136 VVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVND-KQEIFISDNRAHCVKVFNYEG-QYLRQIGGEGITNYPIGV 212 (286)
T ss_dssp EEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECS-SSEEEEEEGGGTEEEEEETTC-CEEEEESCTTTSCSEEEE
T ss_pred EEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECC-CCCEEEEECCCCEEEEEcCCC-CEEEEEccCCccCCCcEE
Confidence 666678899999964 55555553 445789999999 888888877889999999854 44433332 2578999
Q ss_pred EEeeCCCeEEEEecCC-cEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCc
Q 005352 443 CYRPDGQGGIVGSMMG-DCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN 518 (701)
Q Consensus 443 ~~sp~g~~l~~gs~dg-~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~ 518 (701)
+++|+|+.+++...++ .|.+|+...... .. +.. ......+.++++.| ++.++++ +.++.|++|+...
T Consensus 213 ~~d~~G~l~v~~~~~~~~i~~~~~~g~~~-~~--~~~----~~~~~~~~~i~~~~-~g~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 213 GINSNGEILIADNHNNFNLTIFTQDGQLI-SA--LES----KVKHAQCFDVALMD-DGSVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp EECTTCCEEEEECSSSCEEEEECTTSCEE-EE--EEE----SSCCSCEEEEEEET-TTEEEEE-ETTTEEEEEECSC
T ss_pred EECCCCCEEEEeCCCCEEEEEECCCCCEE-EE--Ecc----cCCCCcceeEEECC-CCcEEEE-CCCCeEEEEEccc
Confidence 9999998888887776 999999654322 11 111 11223477899999 5666555 6799999998754
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.46 E-value=3.6e-12 Score=134.31 Aligned_cols=242 Identities=9% Similarity=0.023 Sum_probs=157.0
Q ss_pred EEEEecCC-eEEEEE----------CCCcEEEEECCCCeeeeeec-------CCCCeEEEEEeeCCCCEEEEEEc--CCc
Q 005352 359 DLSWSKNN-YLLSAS----------IDKTVRLWRVGNDHCLRVFP-------HSNYVTCVHFNPVDDNYFISGSI--DGK 418 (701)
Q Consensus 359 ~l~~s~~~-~l~s~s----------~dg~I~iWd~~~~~~~~~~~-------h~~~V~~l~f~p~~~~~l~sgs~--dg~ 418 (701)
.++|+|++ ++++++ .+++|.+||+.+.+.+..+. +......++|+| ++++|+++.. ++.
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~sp-dg~~l~v~n~~~~~~ 132 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTT-DGKFIVLQNASPATS 132 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECT-TSSEEEEEEESSSEE
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECC-CCCEEEEECCCCCCe
Confidence 78999999 777765 36789999999998888775 234577899999 9999988874 578
Q ss_pred EEEEeCCCCcEEEE-ecCCCcEEEEEEeeCC-CeEEEEecCCcEEEEECCC-CeeeeeeeEEeecccCCCCCCeeEEEEe
Q 005352 419 VRIWAVLSCHVVDW-VDIRQIVTAVCYRPDG-QGGIVGSMMGDCRFYNVSD-NHLELDAEICVHSKKKAPCKRITGFQFL 495 (701)
Q Consensus 419 v~iwd~~~~~~~~~-~~~~~~i~~i~~sp~g-~~l~~gs~dg~v~i~d~~~-~~~~~~~~~~~~~~~~~~~~~i~~l~~~ 495 (701)
|.+||+.+++.+.. +..... ..+.+.|++ ..+++.+.||.+.+|++.. ++.... ............+ ..+.+.
T Consensus 133 v~v~d~~~~~~~~~~i~~~~~-~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~--~~~~~~~~~~~~~-~~~~~~ 208 (361)
T 2oiz_A 133 IGIVDVAKGDYVEDVTAAAGC-WSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQ--SRSKQMFSVKDDP-IFIAPA 208 (361)
T ss_dssp EEEEETTTTEEEEEEGGGTTE-EEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEE--EECCCCSCTTTSC-BCSCCE
T ss_pred EEEEECCCCcEEEEEecCCCc-ceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeee--ccccceEcCCCCc-eEEEec
Confidence 99999999988876 665443 335677765 6778888999999999865 332211 0000001111111 122335
Q ss_pred cCCCCEEEEEECCCcEEEEeCCcccee----eeccc----CC----CCeEEEEEecCCCEEEEEeC-----------CCc
Q 005352 496 PQDSSKVMVSCADSQVRILQGPNVIGK----YKGLR----RS----GNQLSACFTSDGKHIVSAGE-----------DSN 552 (701)
Q Consensus 496 p~~~~~l~~~s~dg~I~iwd~~~~~~~----~~~~~----~~----~~v~~l~~s~dg~~l~sgs~-----------Dg~ 552 (701)
+ ++..++..+.++.|.++|....... +.... .. .....++|+|++++++++.. .+.
T Consensus 209 ~-~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~ 287 (361)
T 2oiz_A 209 L-DKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAE 287 (361)
T ss_dssp E-CSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSE
T ss_pred c-cCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCce
Confidence 5 4566677778899999998532211 11000 00 11123689999888877643 347
Q ss_pred EEEEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCC
Q 005352 553 VYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFP 632 (701)
Q Consensus 553 I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d 632 (701)
|.+||+.+.+.. ..+ .... +..++++|+ ++.+++.+.
T Consensus 288 v~viD~~t~~~v--------~~i-----------------------------~~~~-p~~ia~spd----g~~l~v~n~- 324 (361)
T 2oiz_A 288 IWVMDTKTKQRV--------ARI-----------------------------PGRD-ALSMTIDQQ----RNLMLTLDG- 324 (361)
T ss_dssp EEEEETTTTEEE--------EEE-----------------------------ECTT-CCEEEEETT----TTEEEEECS-
T ss_pred EEEEECCCCcEE--------EEE-----------------------------ecCC-eeEEEECCC----CCEEEEeCC-
Confidence 999998876521 111 0011 556788887 556666555
Q ss_pred CcccCCCCccC--CCCccc
Q 005352 633 KGCATWPEEKL--PALSQL 649 (701)
Q Consensus 633 ~~~~~W~~~~~--~~~~~~ 649 (701)
+.+.+|+.+.+ ..+..+
T Consensus 325 ~~v~v~D~~t~~l~~~~~i 343 (361)
T 2oiz_A 325 GNVNVYDISQPEPKLLRTI 343 (361)
T ss_dssp SCEEEEECSSSSCEEEEEE
T ss_pred CeEEEEECCCCcceeeEEe
Confidence 89999998887 655553
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.44 E-value=7.2e-11 Score=121.23 Aligned_cols=248 Identities=12% Similarity=0.122 Sum_probs=167.0
Q ss_pred CCCcEEEEEEccCCCEEEE-------EeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceee
Q 005352 249 HDGSILTMKFSPDGQYLAS-------AGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISIL 321 (701)
Q Consensus 249 H~~~I~~l~fspdg~~Las-------gs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (701)
.-....+++|+++|.++++ +..++.|.+||..+++... +..
T Consensus 16 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~-~~~------------------------------- 63 (314)
T 1pjx_A 16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTV-ICK------------------------------- 63 (314)
T ss_dssp CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEE-EEC-------------------------------
T ss_pred cCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEE-EEe-------------------------------
Confidence 3445679999999988888 6778899999976654210 000
Q ss_pred EEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecC-CeEEEEECCCcEEEEECCCCeeeee-ec-----CC
Q 005352 322 KSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN-NYLLSASIDKTVRLWRVGNDHCLRV-FP-----HS 394 (701)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~-~~l~s~s~dg~I~iWd~~~~~~~~~-~~-----h~ 394 (701)
....++...+.+++++++ +.|+.++..+.|.+||.. ++.... .. ..
T Consensus 64 --------------------------~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~ 116 (314)
T 1pjx_A 64 --------------------------PEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRM 116 (314)
T ss_dssp --------------------------CEETTEECCEEEEEECSSSSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBC
T ss_pred --------------------------cccCCCCCCCceEEEecCCCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccc
Confidence 001124456889999999 766666656689999998 665443 22 12
Q ss_pred CCeEEEEEeeCCCCEEEEEEcC---------------CcEEEEeCCCCcEEEEecCCCcEEEEEEe----eCCCeEEEE-
Q 005352 395 NYVTCVHFNPVDDNYFISGSID---------------GKVRIWAVLSCHVVDWVDIRQIVTAVCYR----PDGQGGIVG- 454 (701)
Q Consensus 395 ~~V~~l~f~p~~~~~l~sgs~d---------------g~v~iwd~~~~~~~~~~~~~~~i~~i~~s----p~g~~l~~g- 454 (701)
..+.++++.+ +++++++...+ +.|..||.. ++.............++++ |+++.++++
T Consensus 117 ~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~ 194 (314)
T 1pjx_A 117 QGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAE 194 (314)
T ss_dssp BCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEE
T ss_pred cCCcCEEECC-CCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCCCcceEEEecccCCCCCEEEEEE
Confidence 3588999999 88888776654 567778776 6555444444567889999 999766655
Q ss_pred ecCCcEEEEECC-CCeeeeeeeEEeecccCCCC-CCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCe
Q 005352 455 SMMGDCRFYNVS-DNHLELDAEICVHSKKKAPC-KRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQ 532 (701)
Q Consensus 455 s~dg~v~i~d~~-~~~~~~~~~~~~~~~~~~~~-~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v 532 (701)
..++.|.+|++. ++......... . ...+. ..+..+++.+ ++.++++...++.|.+||..+.........+...+
T Consensus 195 ~~~~~i~~~~~~~~g~~~~~~~~~--~-~~~~~~~~p~~i~~d~-~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~ 270 (314)
T 1pjx_A 195 TPTKKLWSYDIKGPAKIENKKVWG--H-IPGTHEGGADGMDFDE-DNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKP 270 (314)
T ss_dssp TTTTEEEEEEEEETTEEEEEEEEE--E-CCCCSSCEEEEEEEBT-TCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCE
T ss_pred CCCCeEEEEECCCCCccccceEEE--E-CCCCCCCCCCceEECC-CCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCc
Confidence 567899999986 34322111111 1 11122 4577899998 67888777788999999987332222222244778
Q ss_pred EEEEEecCCCEE-EEEeCCCcEEEEeCCCC
Q 005352 533 LSACFTSDGKHI-VSAGEDSNVYMWNCIGH 561 (701)
Q Consensus 533 ~~l~~s~dg~~l-~sgs~Dg~I~iWd~~~~ 561 (701)
.+++|+++|++| ++...++.|..|++...
T Consensus 271 ~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 271 SNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred eeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 999999999955 45556789999998753
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=9.3e-12 Score=129.40 Aligned_cols=248 Identities=11% Similarity=0.095 Sum_probs=169.3
Q ss_pred ccCeEEEEEecCC-eEEEEECC------------------------CcEEEEECCCCeeeeeec--CCCCeEEEEEeeCC
Q 005352 354 SGEILDLSWSKNN-YLLSASID------------------------KTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVD 406 (701)
Q Consensus 354 ~~~I~~l~~s~~~-~l~s~s~d------------------------g~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~~ 406 (701)
-+.+.+|+++++| ++++...+ ++|.+||..+++.+..+. +-..+..++++| +
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~-~ 101 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDT-D 101 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECT-T
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECC-C
Confidence 3679999999999 66666655 479999999998887775 345789999999 8
Q ss_pred CCEEEEEEcCCcEEEEeCCCCc-EEEEe----------cCCCcEEEEEEee-CCCeEEEEe-cCCcEEEEECCCCeeeee
Q 005352 407 DNYFISGSIDGKVRIWAVLSCH-VVDWV----------DIRQIVTAVCYRP-DGQGGIVGS-MMGDCRFYNVSDNHLELD 473 (701)
Q Consensus 407 ~~~l~sgs~dg~v~iwd~~~~~-~~~~~----------~~~~~i~~i~~sp-~g~~l~~gs-~dg~v~i~d~~~~~~~~~ 473 (701)
++++++...++.|++||..... .+..+ .+-..+..++++| ++..+++.+ .++.|++|+.. +.....
T Consensus 102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~-g~~~~~ 180 (329)
T 3fvz_A 102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPS-GKFVTQ 180 (329)
T ss_dssp SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTT-SCEEEE
T ss_pred CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCC-CCEEEE
Confidence 9988888889999999986552 23322 2233689999999 787777776 68999999954 333221
Q ss_pred eeEEeeccc----CCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCcc--ceeeecccCCCCeEEEEEecCCCEEEEE
Q 005352 474 AEICVHSKK----KAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV--IGKYKGLRRSGNQLSACFTSDGKHIVSA 547 (701)
Q Consensus 474 ~~~~~~~~~----~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~--~~~~~~~~~~~~v~~l~~s~dg~~l~sg 547 (701)
.. ..... ..+.....++++.|+.+.++++...++.|++|+..+. ...+....+...+..++|+| +..+++.
T Consensus 181 ~~--~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~ 257 (329)
T 3fvz_A 181 WG--EESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVN 257 (329)
T ss_dssp EC--EECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEE
T ss_pred ec--cCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeC
Confidence 11 11100 1223457899999954778888888999999998633 33333334567788999999 4333333
Q ss_pred -------eCCCcEEEEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCcc
Q 005352 548 -------GEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARF 620 (701)
Q Consensus 548 -------s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~ 620 (701)
..+..|++|++.+++... .+. .. ......+..++++|+
T Consensus 258 g~~~v~~~~~~~v~~~~~~~g~~~~--------~~~-------------~~------------~~~~~~p~~ia~~~d-- 302 (329)
T 3fvz_A 258 GKPYFGDQEPVQGFVMNFSSGEIID--------VFK-------------PV------------RKHFDMPHDIVASED-- 302 (329)
T ss_dssp CCCCTTCSCCCCEEEEETTTCCEEE--------EEC-------------CS------------SSCCSSEEEEEECTT--
T ss_pred CCEEeccCCCcEEEEEEcCCCeEEE--------EEc-------------CC------------CCccCCeeEEEECCC--
Confidence 345589999988775210 000 00 001123456778886
Q ss_pred ccCccccccCCCCcccCCCCccC
Q 005352 621 SLGQEYVFESFPKGCATWPEEKL 643 (701)
Q Consensus 621 ~~~~~~~~~s~d~~~~~W~~~~~ 643 (701)
+..+++...++.|+.|+.+..
T Consensus 303 --G~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 303 --GTVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp --SEEEEEESSSCCEEEEEEEEC
T ss_pred --CCEEEEECCCCEEEEEeCCcc
Confidence 677888888888988886543
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.43 E-value=1e-11 Score=129.02 Aligned_cols=200 Identities=12% Similarity=0.130 Sum_probs=141.4
Q ss_pred EEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeee-cCCCCeEEEEEeeCCCCEEEEEEcC----CcEEEE
Q 005352 349 EFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVF-PHSNYVTCVHFNPVDDNYFISGSID----GKVRIW 422 (701)
Q Consensus 349 ~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~-~h~~~V~~l~f~p~~~~~l~sgs~d----g~v~iw 422 (701)
.+..+...+.+++|++++ +++++..++.|.+||..+++..... .+...+.+++++| +++++++...+ +.|.+|
T Consensus 39 ~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~-dg~l~v~~~~~~~~~~~i~~~ 117 (333)
T 2dg1_A 39 EISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAA 117 (333)
T ss_dssp EEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEE
T ss_pred EEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECC-CCcEEEEeCCCCCCCceEEEE
Confidence 344556677899999999 6667788899999999988776654 4667899999999 88888877666 689999
Q ss_pred eCCCCcEEEEe---cCCCcEEEEEEeeCCCeEEEEec------CCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEE
Q 005352 423 AVLSCHVVDWV---DIRQIVTAVCYRPDGQGGIVGSM------MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQ 493 (701)
Q Consensus 423 d~~~~~~~~~~---~~~~~i~~i~~sp~g~~l~~gs~------dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 493 (701)
|..++...... .....+..++++|+|+.+++... .+.|..|+..+.+..... . ....+.+++
T Consensus 118 d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~------~~~~~~~i~ 188 (333)
T 2dg1_A 118 TENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII---Q------NISVANGIA 188 (333)
T ss_dssp CTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEE---E------EESSEEEEE
T ss_pred eCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEee---c------CCCcccceE
Confidence 99887765332 23456899999999987776553 355666666554432110 0 113468899
Q ss_pred EecCCCCEE-EEEECCCcEEEEeCCcc---ceee-----ecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 005352 494 FLPQDSSKV-MVSCADSQVRILQGPNV---IGKY-----KGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCI 559 (701)
Q Consensus 494 ~~p~~~~~l-~~~s~dg~I~iwd~~~~---~~~~-----~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~ 559 (701)
|+| ++..+ ++...++.|.+||.... ...+ ........+..++++++|+++++...++.|.+|+.+
T Consensus 189 ~~~-dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~ 262 (333)
T 2dg1_A 189 LST-DEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR 262 (333)
T ss_dssp ECT-TSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred ECC-CCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECCC
Confidence 999 56644 55556889999998531 1111 111112467889999999988888888999999974
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.41 E-value=3.5e-11 Score=125.65 Aligned_cols=183 Identities=9% Similarity=-0.002 Sum_probs=125.4
Q ss_pred cCeEEEEEecCC-eEEEEECC---C--cEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcC------------
Q 005352 355 GEILDLSWSKNN-YLLSASID---K--TVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSID------------ 416 (701)
Q Consensus 355 ~~I~~l~~s~~~-~l~s~s~d---g--~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~d------------ 416 (701)
..+..++|+|+| +|+.++.+ + .|.+|++.+++......+.. +..++|+| +++.|+.++.+
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wsp-dg~~l~~~~~~~~~~~~~~~~~~ 136 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IRSLEWNE-DSRKLLIVGFKRREDEDFIFEDD 136 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EEEEEECT-TSSEEEEEEECCCC---------
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-ccceeECC-CCCEEEEEEccCCCcCCcEEEcc
Confidence 357789999999 77766653 3 38888999888777666555 99999999 99988887642
Q ss_pred ---------------CcEEEEeCCCCcE-EEEecCCCcEEEEEEeeCCCeEEEEecCC-------cEEEEECCCCeeeee
Q 005352 417 ---------------GKVRIWAVLSCHV-VDWVDIRQIVTAVCYRPDGQGGIVGSMMG-------DCRFYNVSDNHLELD 473 (701)
Q Consensus 417 ---------------g~v~iwd~~~~~~-~~~~~~~~~i~~i~~sp~g~~l~~gs~dg-------~v~i~d~~~~~~~~~ 473 (701)
..|.+||+.+++. ..+.. . .+..++|+|+| .++++..++ ...+|.+.+++...
T Consensus 137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~- 212 (347)
T 2gop_A 137 VPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEEK- 212 (347)
T ss_dssp CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEEEE-
T ss_pred cceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCceEE-
Confidence 5699999998877 44333 3 78899999999 777775542 34454444443321
Q ss_pred eeEEeecccCCCCCCeeEEEEecCCCCEEEEEECC--------CcEEEEeCCccceeeecccCCCCeEE-EEEecCCCEE
Q 005352 474 AEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD--------SQVRILQGPNVIGKYKGLRRSGNQLS-ACFTSDGKHI 544 (701)
Q Consensus 474 ~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~d--------g~I~iwd~~~~~~~~~~~~~~~~v~~-l~~s~dg~~l 544 (701)
+. . + ..+..+ +| +++.|+.++.+ ..|.+|| . .........+...+.. +.|+ ++ ++
T Consensus 213 --l~--~----~-~~~~~~--sp-dg~~l~~~~~~~~~~~~~~~~l~~~d-~-~~~~~l~~~~~~~~~~~~~~s-dg-~~ 276 (347)
T 2gop_A 213 --MF--E----K-VSFYAV--DS-DGERILLYGKPEKKYMSEHNKLYIYD-G-KEVMGILDEVDRGVGQAKIKD-GK-VY 276 (347)
T ss_dssp --EE--E----E-ESEEEE--EE-CSSCEEEEECCSSSCCCSSCEEEEEC-S-SCEEESSTTCCSEEEEEEEET-TE-EE
T ss_pred --ec--c----C-cceeeE--CC-CCCEEEEEEccccCCccccceEEEEC-C-CceEeccccCCcccCCccEEc-Cc-EE
Confidence 11 1 1 223333 88 67777766643 4688888 2 2222222234567776 8999 88 99
Q ss_pred EEEeCCCcEEEEeCCC
Q 005352 545 VSAGEDSNVYMWNCIG 560 (701)
Q Consensus 545 ~sgs~Dg~I~iWd~~~ 560 (701)
++++.++.++|| +.+
T Consensus 277 ~~~~~~~~~~l~-~~~ 291 (347)
T 2gop_A 277 FTLFEEGSVNLY-IWD 291 (347)
T ss_dssp EEEEETTEEEEE-EES
T ss_pred EEEecCCcEEEE-EcC
Confidence 999999999999 874
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=6.1e-10 Score=113.09 Aligned_cols=236 Identities=6% Similarity=0.030 Sum_probs=167.1
Q ss_pred cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeec
Q 005352 248 AHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRT 327 (701)
Q Consensus 248 ~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (701)
.+...+.+|+++++|.++++...++.|.+||.. ++. ..+.
T Consensus 12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~-~~~~-------------------------------------- 51 (299)
T 2z2n_A 12 NQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKI-TEYP-------------------------------------- 51 (299)
T ss_dssp SSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCE-EEEE--------------------------------------
T ss_pred CcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCe-EEec--------------------------------------
Confidence 456789999999999988777667899999876 321 1110
Q ss_pred CCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec---CCCCeEEEEEe
Q 005352 328 SESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP---HSNYVTCVHFN 403 (701)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~---h~~~V~~l~f~ 403 (701)
+..+...+.++++.+++ .+++...++.|..||.. ++. ..+. ....+.++++.
T Consensus 52 ----------------------~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~~ 107 (299)
T 2z2n_A 52 ----------------------LPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII-KEYTLPNPDSAPYGITEG 107 (299)
T ss_dssp ----------------------CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEEC
T ss_pred ----------------------CCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-EEEeCCCcCCCceeeEEC
Confidence 01123568889999988 55555557889999986 332 2222 45578999999
Q ss_pred eCCCCEEEEEEcCCcEEEEeCCCCcEEEEe--cCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecc
Q 005352 404 PVDDNYFISGSIDGKVRIWAVLSCHVVDWV--DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSK 481 (701)
Q Consensus 404 p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~--~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~ 481 (701)
| ++.++++...++.|.+||. +++..... .....+..+++.++|+.+++...++.|..||. +++... +.
T Consensus 108 ~-~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~---- 177 (299)
T 2z2n_A 108 P-NGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITE---FK---- 177 (299)
T ss_dssp T-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEE---EE----
T ss_pred C-CCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEE---ee----
Confidence 8 8888887777889999998 55554332 23456899999999987777777789999998 554321 11
Q ss_pred cCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 005352 482 KKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNC 558 (701)
Q Consensus 482 ~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~ 558 (701)
.......+.++++.+ ++.++++...++.|.+||.......+....+...+.+++++++|+++++...++.|..|+.
T Consensus 178 ~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 178 IPTPASGPVGITKGN-DDALWFVEIIGNKIGRITTSGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS 253 (299)
T ss_dssp CSSTTCCEEEEEECT-TSSEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET
T ss_pred CCCCCCcceeEEECC-CCCEEEEccCCceEEEECCCCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC
Confidence 112235678899998 5676666666889999998433233333334567899999999997777767889999997
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=4.4e-10 Score=124.77 Aligned_cols=272 Identities=10% Similarity=0.044 Sum_probs=179.5
Q ss_pred ccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEee--cCeeeeeecCCC
Q 005352 215 DAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVV--EDERLTEVDIPE 292 (701)
Q Consensus 215 ~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~--~~~~~~~~~~~~ 292 (701)
.+++...++.|.|+|...... . ..+. ....+..+.|+|||++|++++.|+.|.+||+. +.+.+.+
T Consensus 169 ~~V~~~~~~~V~viD~~t~~v-~------~~i~-~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~----- 235 (567)
T 1qks_A 169 FSVTLRDAGQIALIDGSTYEI-K------TVLD-TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAE----- 235 (567)
T ss_dssp EEEEETTTTEEEEEETTTCCE-E------EEEE-CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEE-----
T ss_pred EEEEeCCCCeEEEEECCCCeE-E------EEEe-CCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEE-----
Confidence 344566789999998754321 1 1122 22356789999999999999999999999985 4432221
Q ss_pred CCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEe----cCC-e
Q 005352 293 IDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS----KNN-Y 367 (701)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s----~~~-~ 367 (701)
+... .....++|+ |+| +
T Consensus 236 ---------------------------------------------------------i~~G-~~P~~ia~s~~~~pDGk~ 257 (567)
T 1qks_A 236 ---------------------------------------------------------IKIG-SEARSIETSKMEGWEDKY 257 (567)
T ss_dssp ---------------------------------------------------------EECC-SEEEEEEECCSTTCTTTE
T ss_pred ---------------------------------------------------------EecC-CCCceeEEccccCCCCCE
Confidence 2211 234688999 688 5
Q ss_pred EEEE-ECCCcEEEEECCCCeeeeeecC------------CCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEE--EE
Q 005352 368 LLSA-SIDKTVRLWRVGNDHCLRVFPH------------SNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV--DW 432 (701)
Q Consensus 368 l~s~-s~dg~I~iWd~~~~~~~~~~~h------------~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~--~~ 432 (701)
++++ ..+++|.++|..+.+.+..+.. ...+..+.+++....+++.....|.|.++|....... ..
T Consensus 258 l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~ 337 (567)
T 1qks_A 258 AIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTE 337 (567)
T ss_dssp EEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEE
T ss_pred EEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeee
Confidence 5555 4569999999999998887652 1267888888833445555556799999999876433 33
Q ss_pred ecCCCcEEEEEEeeCCCeEEEEe-cCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEE-CCCc
Q 005352 433 VDIRQIVTAVCYRPDGQGGIVGS-MMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSC-ADSQ 510 (701)
Q Consensus 433 ~~~~~~i~~i~~sp~g~~l~~gs-~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s-~dg~ 510 (701)
+........+.|+|+|++++++. .++.|.++|+.++++.... ..- ....|...-..+ +.|+.+..++++. .++.
T Consensus 338 i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i--~vg-g~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~ 413 (567)
T 1qks_A 338 ISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIE--DTG-GQTPHPGRGANF-VHPTFGPVWATSHMGDDS 413 (567)
T ss_dssp EECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEE--ECS-SSSBCCTTCEEE-EETTTEEEEEEEBSSSSE
T ss_pred eeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEE--ecc-CcCCCCccceee-ECCCCCcEEEeCCCCCCe
Confidence 44556678899999999988766 5789999999998764322 110 122332222222 5674344444443 4689
Q ss_pred EEEEeCCc-------cceeeecccCCCCeEEEEEecCCCEEEEEeC-------CCcEEEEeCCCC
Q 005352 511 VRILQGPN-------VIGKYKGLRRSGNQLSACFTSDGKHIVSAGE-------DSNVYMWNCIGH 561 (701)
Q Consensus 511 I~iwd~~~-------~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~-------Dg~I~iWd~~~~ 561 (701)
|.++|... .............-..+..+|++++|.+... ...|.++|+.+.
T Consensus 414 Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 414 VALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp EEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred EEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence 99999875 2222222112223345778999999988763 359999999876
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=8.1e-10 Score=112.20 Aligned_cols=274 Identities=8% Similarity=0.097 Sum_probs=179.3
Q ss_pred ceeeecCcc-cccccc-ccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCe
Q 005352 206 GERVRLNEE-DAMFCS-KVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDE 283 (701)
Q Consensus 206 ~~~~~~~~~-~~~~~~-~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~ 283 (701)
...+..+.+ .+.++. .++.|.+|+.. .. +... .+..+...+.+|+++++|.++++...++.|..|+.. ++
T Consensus 17 ~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~--~~~~----~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~ 88 (299)
T 2z2n_A 17 PYGITVSDKGKVWITQHKANMISCINLD-GK--ITEY----PLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GI 88 (299)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEECTT-CC--EEEE----ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred ccceEECCCCCEEEEecCCCcEEEEcCC-CC--eEEe----cCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-Cc
Confidence 344444433 333333 36788888755 21 1111 112245679999999999988887778889888864 22
Q ss_pred eeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEe
Q 005352 284 RLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS 363 (701)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s 363 (701)
...+. +..+...+..+++.
T Consensus 89 -~~~~~------------------------------------------------------------~~~~~~~~~~i~~~ 107 (299)
T 2z2n_A 89 -IKEYT------------------------------------------------------------LPNPDSAPYGITEG 107 (299)
T ss_dssp -EEEEE------------------------------------------------------------CSSTTCCEEEEEEC
T ss_pred -EEEEe------------------------------------------------------------CCCcCCCceeeEEC
Confidence 11110 01123467889999
Q ss_pred cCC-eEEEEECCCcEEEEECCCCeeeeee-c-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEe--cCCCc
Q 005352 364 KNN-YLLSASIDKTVRLWRVGNDHCLRVF-P-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV--DIRQI 438 (701)
Q Consensus 364 ~~~-~l~s~s~dg~I~iWd~~~~~~~~~~-~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~--~~~~~ 438 (701)
+++ .+++...++.|.+||. +++..... . ....+.++++.+ +++++++...++.|..||. +++..... .....
T Consensus 108 ~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~ 184 (299)
T 2z2n_A 108 PNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGS-DNALWFTENQNNAIGRITE-SGDITEFKIPTPASG 184 (299)
T ss_dssp TTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCC
T ss_pred CCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcC-CCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCc
Confidence 988 5555556789999998 55443322 2 446789999998 8888777766789999999 66655432 23456
Q ss_pred EEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCc
Q 005352 439 VTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN 518 (701)
Q Consensus 439 i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~ 518 (701)
+..++++++|+.+++...++.|..|+. ++.... +. .......+.++++.+ ++.++++...++.|.+||...
T Consensus 185 ~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~----~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~~g 255 (299)
T 2z2n_A 185 PVGITKGNDDALWFVEIIGNKIGRITT-SGEITE---FK----IPTPNARPHAITAGA-GIDLWFTEWGANKIGRLTSNN 255 (299)
T ss_dssp EEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE---EE----CSSTTCCEEEEEECS-TTCEEEEETTTTEEEEEETTT
T ss_pred ceeEEECCCCCEEEEccCCceEEEECC-CCcEEE---EE----CCCCCCCceeEEECC-CCCEEEeccCCceEEEECCCC
Confidence 889999999987666666889999998 554321 11 112345688999998 566666555789999999854
Q ss_pred cceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 519 VIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 519 ~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
....+....+...+.++++ ++|.++++.. .+.|..++.++.+
T Consensus 256 ~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 256 IIEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKDN 297 (299)
T ss_dssp EEEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC---
T ss_pred ceEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCccc
Confidence 3333333334567899999 8888777665 5677778776543
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.38 E-value=7.5e-11 Score=119.05 Aligned_cols=210 Identities=10% Similarity=-0.034 Sum_probs=155.3
Q ss_pred CCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccc
Q 005352 261 DGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVF 340 (701)
Q Consensus 261 dg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (701)
.+++|++++.|+.|.+||..+++.+.++.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~--------------------------------------------------- 32 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYP--------------------------------------------------- 32 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEE---------------------------------------------------
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeC---------------------------------------------------
Confidence 35789999999999999998887554432
Q ss_pred cccCCCeEEEcCCc-cCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeecC--CCCeEEEEEeeCCCCEEEEEEc-
Q 005352 341 RILEKPLHEFHGHS-GEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPH--SNYVTCVHFNPVDDNYFISGSI- 415 (701)
Q Consensus 341 ~~~~~~~~~~~~h~-~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~h--~~~V~~l~f~p~~~~~l~sgs~- 415 (701)
.+. ..+.++.+.|+| +|+ +.++.|..||. +++.+..+.. ...+.++.+.| +++++++.+.
T Consensus 33 -----------~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~-dG~~lv~~~~~ 97 (276)
T 3no2_A 33 -----------LEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQTARILP-DGNALVAWCGH 97 (276)
T ss_dssp -----------CCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECT-TSCEEEEEEST
T ss_pred -----------CCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccccEECC-CCCEEEEecCC
Confidence 222 356788899999 555 56788999999 8998888874 35788999999 9999999887
Q ss_pred CCcEEEEeCCCCcEEEEecC-------CCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCC
Q 005352 416 DGKVRIWAVLSCHVVDWVDI-------RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKR 488 (701)
Q Consensus 416 dg~v~iwd~~~~~~~~~~~~-------~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 488 (701)
++.|..+|. +++.+..... ......+++.++|+++++...++.|..||.. ++........ ..
T Consensus 98 ~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~---------~~ 166 (276)
T 3no2_A 98 PSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLS---------GT 166 (276)
T ss_dssp TEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECS---------SC
T ss_pred CCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECC---------CC
Confidence 778888886 5665533321 1234556788999999999999999999998 6655432211 23
Q ss_pred eeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccC------CCCeEEEEEecCCCEEEEEe
Q 005352 489 ITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRR------SGNQLSACFTSDGKHIVSAG 548 (701)
Q Consensus 489 i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~------~~~v~~l~~s~dg~~l~sgs 548 (701)
..++...+ ++++++++..++.|..+|..+.....+...+ ...+..++..++|.++++..
T Consensus 167 ~~~~~~~~-~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 167 PFSSAFLD-NGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp CCEEEECT-TSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred ccceeEcC-CCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence 45567777 6888888888889999998865554443221 23378888899999888874
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.38 E-value=4.2e-11 Score=124.33 Aligned_cols=242 Identities=7% Similarity=0.023 Sum_probs=163.8
Q ss_pred CeEEEEEecCCeEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecC
Q 005352 356 EILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDI 435 (701)
Q Consensus 356 ~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~ 435 (701)
....+.+..+..+++...++.|.+||..+++.+..+.....+..+++++ ++.++++...++.|.+||..++++......
T Consensus 45 ~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~i~~~~-~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~ 123 (328)
T 3dsm_A 45 VAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFLS-DEKAYVTQIWDYRIFIINPKTYEITGYIEC 123 (328)
T ss_dssp CEEEEEEETTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEEEEEEE-TTEEEEEEBSCSEEEEEETTTTEEEEEEEC
T ss_pred cceEEEEECCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcEEEEeC-CCeEEEEECCCCeEEEEECCCCeEEEEEEc
Confidence 4566777543355666678999999999999999888777899999998 775555544789999999999988765554
Q ss_pred CC------cEEEEEEeeCCCeEEEEe--cCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEEC
Q 005352 436 RQ------IVTAVCYRPDGQGGIVGS--MMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCA 507 (701)
Q Consensus 436 ~~------~i~~i~~sp~g~~l~~gs--~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~ 507 (701)
.. ....+++ . +..++++. .++.|.++|+.+++....... ......+.+.| ++.+++++..
T Consensus 124 g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~---------g~~p~~i~~~~-dG~l~v~~~~ 191 (328)
T 3dsm_A 124 PDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDKVVDELTI---------GIQPTSLVMDK-YNKMWTITDG 191 (328)
T ss_dssp TTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTEEEEEEEC---------SSCBCCCEECT-TSEEEEEBCC
T ss_pred CCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCeEEEEEEc---------CCCccceEEcC-CCCEEEEECC
Confidence 44 5667777 3 45555555 488999999998876433211 12345788888 5666666554
Q ss_pred C----------CcEEEEeCCccceeeecc-cCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCCCCccccccccccc
Q 005352 508 D----------SQVRILQGPNVIGKYKGL-RRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLE 576 (701)
Q Consensus 508 d----------g~I~iwd~~~~~~~~~~~-~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~ 576 (701)
+ +.|.++|..+........ ........++|+|++++|+++.. .|++||..+++.....
T Consensus 192 ~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~--------- 260 (328)
T 3dsm_A 192 GYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRP--------- 260 (328)
T ss_dssp BCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSC---------
T ss_pred CccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeee---------
Confidence 4 789999987544332221 12346899999999999988765 8999999877621000
Q ss_pred cccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCcccccc----CCCCcccCCCCccCCCCcccc
Q 005352 577 RFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFE----SFPKGCATWPEEKLPALSQLS 650 (701)
Q Consensus 577 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~----s~d~~~~~W~~~~~~~~~~~~ 650 (701)
... .....+..++++|+ .+..+++. ..++.+.+|+.+ ...+..+.
T Consensus 261 ~~~-------------------------~~~~~p~gi~vdp~---~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~ 309 (328)
T 3dsm_A 261 FLE-------------------------FRDTKYYGLTVNPN---NGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFY 309 (328)
T ss_dssp SBC-------------------------CCSSCEEEEEECTT---TCCEEEEECTTSSSEEEEEEECTT-CCEEEEEE
T ss_pred eec-------------------------CCCCceEEEEEcCC---CCeEEEEcccccccCCEEEEECCC-CCEEEEEE
Confidence 000 00122344667774 25556665 567888899887 66566553
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.37 E-value=4.6e-11 Score=138.48 Aligned_cols=240 Identities=15% Similarity=0.116 Sum_probs=155.7
Q ss_pred cCCCcEEEEEEccCCCEEEEEeCC-----CcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeE
Q 005352 248 AHDGSILTMKFSPDGQYLASAGDD-----GVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (701)
Q Consensus 248 ~H~~~I~~l~fspdg~~Lasgs~D-----g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (701)
+|...+..++|||||++||.+..+ ..|++||+.+++.+..
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~----------------------------------- 204 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD----------------------------------- 204 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-----------------------------------
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-----------------------------------
Confidence 355578999999999999987654 4699999988763210
Q ss_pred EeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCCeEEEEECCCc--------------EEEEECCCCee-
Q 005352 323 SLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKT--------------VRLWRVGNDHC- 387 (701)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~l~s~s~dg~--------------I~iWd~~~~~~- 387 (701)
..+...+..++|+|+..|+.++.++. |++|++.++..
T Consensus 205 ----------------------------~~~~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~ 256 (741)
T 1yr2_A 205 ----------------------------ELKWVKFSGLAWLGNDALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSA 256 (741)
T ss_dssp ----------------------------EEEEEESCCCEESTTSEEEEEECCCC--------CCCCCEEEEEETTSCGGG
T ss_pred ----------------------------cCCCceeccEEEECCCEEEEEEecCcccccccccCCCCCEEEEEECCCCchh
Confidence 00111124678888875555555543 89999987752
Q ss_pred -eeeec---CCCCeEEEEEeeCCCCEEEEEEcCC-----cEEEEeCCCC--c-EEEEecCCCcEEEEEEeeCCCeEEEEe
Q 005352 388 -LRVFP---HSNYVTCVHFNPVDDNYFISGSIDG-----KVRIWAVLSC--H-VVDWVDIRQIVTAVCYRPDGQGGIVGS 455 (701)
Q Consensus 388 -~~~~~---h~~~V~~l~f~p~~~~~l~sgs~dg-----~v~iwd~~~~--~-~~~~~~~~~~i~~i~~sp~g~~l~~gs 455 (701)
...+. +...+..+.|+| ++++|+..+.++ .|++||+.++ + ...+..+...+... +.|+|+.|+..+
T Consensus 257 ~~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s 334 (741)
T 1yr2_A 257 DQPVFATPELPKRGHGASVSS-DGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVS 334 (741)
T ss_dssp CEEEECCTTCTTCEEEEEECT-TSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEE
T ss_pred CEEEeccCCCCeEEEEEEECC-CCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEE
Confidence 22333 334688999999 999888877554 7999999877 5 55555555555544 348999888877
Q ss_pred cC----CcEEEEECCCCe--eeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCC-ccceeeec-cc
Q 005352 456 MM----GDCRFYNVSDNH--LELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP-NVIGKYKG-LR 527 (701)
Q Consensus 456 ~d----g~v~i~d~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~-~~~~~~~~-~~ 527 (701)
.+ +.|.+||+.+.. ... + . ..+...+..+.+. ++.++++...|+..+||... +....... ..
T Consensus 335 ~~~~~~~~l~~~d~~~~~~~~~~---l-~----~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~ 404 (741)
T 1yr2_A 335 GDGAPLKKIVRVDLSGSTPRFDT---V-V----PESKDNLESVGIA--GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLP 404 (741)
T ss_dssp CTTCTTCEEEEEECSSSSCEEEE---E-E----CCCSSEEEEEEEE--BTEEEEEEEETTEEEEEEEETTSCEEEECBCS
T ss_pred CCCCCCCEEEEEeCCCCccccEE---E-e----cCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCCCCceeeccCC
Confidence 63 459999987742 111 1 1 1122346667776 45778888888887776443 11111111 11
Q ss_pred CCCCeEEEEEecCCCEEE-EE---eCCCcEEEEeCCCCC
Q 005352 528 RSGNQLSACFTSDGKHIV-SA---GEDSNVYMWNCIGHE 562 (701)
Q Consensus 528 ~~~~v~~l~~s~dg~~l~-sg---s~Dg~I~iWd~~~~~ 562 (701)
....+..++++|+++.|+ +. ...+.|++||+.+++
T Consensus 405 ~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 405 GIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp SSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 356788899999987665 22 345789999998765
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.8e-09 Score=113.92 Aligned_cols=269 Identities=12% Similarity=0.018 Sum_probs=173.9
Q ss_pred eEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEe----------CCCcEEEEEeecCeeeeeecCCCC
Q 005352 224 RVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAG----------DDGVVRLWQVVEDERLTEVDIPEI 293 (701)
Q Consensus 224 ~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs----------~Dg~I~iWd~~~~~~~~~~~~~~~ 293 (701)
.|.++|...... . ..+.....+ .++|+|||++|+.+. .++.|.+||..+.+.+..+.....
T Consensus 48 ~v~v~D~~t~~~--~-----~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~ 118 (373)
T 2mad_H 48 QQWVLDAGSGSI--L-----GHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDA 118 (373)
T ss_pred EEEEEECCCCeE--E-----EEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCc
Confidence 788888754321 1 233333444 899999999998885 367899999987765544432100
Q ss_pred CCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEE
Q 005352 294 DPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSAS 372 (701)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s 372 (701)
.. +. +...-..+.|+|+| +|+.++
T Consensus 119 -----------------------------------------------------~~-~~-~g~~p~~~~~spDG~~l~v~n 143 (373)
T 2mad_H 119 -----------------------------------------------------PR-FD-VGPYSWMNANTPNNADLLFFQ 143 (373)
T ss_pred -----------------------------------------------------cc-cc-cCCCccceEECCCCCEEEEEe
Confidence 00 00 01223478999999 777776
Q ss_pred C--CCcEEEEECCCCeeeee-ecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEec------CCCc-EEEE
Q 005352 373 I--DKTVRLWRVGNDHCLRV-FPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVD------IRQI-VTAV 442 (701)
Q Consensus 373 ~--dg~I~iWd~~~~~~~~~-~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~------~~~~-i~~i 442 (701)
. ++.|.++| .+++.+.. +..... +.+.|.....+++.+.||.+.++|. +++...... ...+ ....
T Consensus 144 ~~~~~~v~viD-~t~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~ 218 (373)
T 2mad_H 144 FAAGPAVGLVV-QGGSSDDQLLSSPTC---YHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQP 218 (373)
T ss_pred cCCCCeEEEEE-CCCCEEeEEcCCCce---EEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecc
Confidence 4 57899999 99998888 765443 4555635567778888999999999 877663221 1122 2335
Q ss_pred EEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecc----cCCCCCCeeEEEEecCCCCEEEEEEC----------C
Q 005352 443 CYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSK----KKAPCKRITGFQFLPQDSSKVMVSCA----------D 508 (701)
Q Consensus 443 ~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~----~~~~~~~i~~l~~~p~~~~~l~~~s~----------d 508 (701)
.+.+++..++..+..+.+.+.|+..........+..... ..........+.++| ++..++++.. .
T Consensus 219 ~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~-d~~~lyV~~~~~~~~~~~~~~ 297 (373)
T 2mad_H 219 AQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLK-SSDGIYLLTSEQSAWKLHAAA 297 (373)
T ss_pred eeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECC-CCCEEEEEeccCCcccccCCC
Confidence 667777666665678899999997654332222221110 001112234477888 5565555443 3
Q ss_pred CcEEEEeCCccceeeecccCCCCeEEEEEecCCC-EEEEEe-CCCcEEEEeCCCCCC
Q 005352 509 SQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGK-HIVSAG-EDSNVYMWNCIGHEE 563 (701)
Q Consensus 509 g~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~-~l~sgs-~Dg~I~iWd~~~~~~ 563 (701)
+.|.++|..+....-... .......++|+|||+ +++++. .++.|.+||..+++.
T Consensus 298 ~~V~VID~~t~~vv~~i~-~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~v 353 (373)
T 2mad_H 298 KEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQ 353 (373)
T ss_pred CeEEEEECCCCEEEEEEE-CCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCE
Confidence 579999998655443332 334688999999999 788877 589999999998873
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=1.7e-09 Score=120.10 Aligned_cols=230 Identities=13% Similarity=0.041 Sum_probs=160.8
Q ss_pred cCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCcc
Q 005352 260 PDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKV 339 (701)
Q Consensus 260 pdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (701)
|.+.++++...++.|.++|..+++.+..+.
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~-------------------------------------------------- 194 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLD-------------------------------------------------- 194 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEE--------------------------------------------------
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEe--------------------------------------------------
Confidence 455677788889999999998876544332
Q ss_pred ccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECC--CCeeeeeecCCCCeEEEEEe----eCCCCEEEE
Q 005352 340 FRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVG--NDHCLRVFPHSNYVTCVHFN----PVDDNYFIS 412 (701)
Q Consensus 340 ~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~--~~~~~~~~~h~~~V~~l~f~----p~~~~~l~s 412 (701)
....+..+.++|++ ++++++.|+.|.+||+. +.+.+..+........++|+ | +++++++
T Consensus 195 -------------~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~ia~s~~~~p-DGk~l~v 260 (567)
T 1qks_A 195 -------------TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGW-EDKYAIA 260 (567)
T ss_dssp -------------CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTC-TTTEEEE
T ss_pred -------------CCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCceeEEccccCC-CCCEEEE
Confidence 11245588999999 88889999999999996 88888888766678899999 7 8887776
Q ss_pred EE-cCCcEEEEeCCCCcEEEEecCC------------CcEEEEEEeeCCCeEEEE-ecCCcEEEEECCCCeeeeeeeEEe
Q 005352 413 GS-IDGKVRIWAVLSCHVVDWVDIR------------QIVTAVCYRPDGQGGIVG-SMMGDCRFYNVSDNHLELDAEICV 478 (701)
Q Consensus 413 gs-~dg~v~iwd~~~~~~~~~~~~~------------~~i~~i~~sp~g~~l~~g-s~dg~v~i~d~~~~~~~~~~~~~~ 478 (701)
+. .++.|.++|..+.+.+..+... ..+..+..++++..+++. ...|.|.++|..+........+
T Consensus 261 ~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i-- 338 (567)
T 1qks_A 261 GAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEI-- 338 (567)
T ss_dssp EEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEE--
T ss_pred EEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeee--
Confidence 65 4589999999998887654321 257788888887655544 5569999999987543221111
Q ss_pred ecccCCCCCCeeEEEEecCCCCEEEEEE-CCCcEEEEeCCccceeeecc-----cCCCCeEEEEEecCCCEE-EEEe-CC
Q 005352 479 HSKKKAPCKRITGFQFLPQDSSKVMVSC-ADSQVRILQGPNVIGKYKGL-----RRSGNQLSACFTSDGKHI-VSAG-ED 550 (701)
Q Consensus 479 ~~~~~~~~~~i~~l~~~p~~~~~l~~~s-~dg~I~iwd~~~~~~~~~~~-----~~~~~v~~l~~s~dg~~l-~sgs-~D 550 (701)
.......++.|+| ++.+++++. .++.|.++|..+........ .|.+.-..+ ++|++..+ +++. .+
T Consensus 339 -----~~~~~~~d~~~~p-dgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~ 411 (567)
T 1qks_A 339 -----SAERFLHDGGLDG-SHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGD 411 (567)
T ss_dssp -----ECCSSEEEEEECT-TSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSS
T ss_pred -----eccccccCceECC-CCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCC
Confidence 1123466789999 566666555 58999999998654332211 132222222 68875444 4553 46
Q ss_pred CcEEEEeCCCCC
Q 005352 551 SNVYMWNCIGHE 562 (701)
Q Consensus 551 g~I~iWd~~~~~ 562 (701)
+.|.+++..+.+
T Consensus 412 ~~Vsvid~~~~~ 423 (567)
T 1qks_A 412 DSVALIGTDPEG 423 (567)
T ss_dssp SEEEEEECCTTT
T ss_pred CeEEEecCCCCC
Confidence 899999988754
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.4e-10 Score=133.54 Aligned_cols=195 Identities=10% Similarity=-0.004 Sum_probs=130.5
Q ss_pred CCccCeEEEEEecCC-eEE-----EEECCCcEEEEECCCCeee-eeecCCCCeEEEEEeeCCCCEEEEEEcCCc------
Q 005352 352 GHSGEILDLSWSKNN-YLL-----SASIDKTVRLWRVGNDHCL-RVFPHSNYVTCVHFNPVDDNYFISGSIDGK------ 418 (701)
Q Consensus 352 ~h~~~I~~l~~s~~~-~l~-----s~s~dg~I~iWd~~~~~~~-~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~------ 418 (701)
+|...+..++|||+| +|+ .|+.+.+|++||+.+++.+ ...........++|+| +++.|+.++.|..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wsp-Dg~~l~~~~~d~~~~~~~~ 196 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTP-DSKGFYYEWLPTDPSIKVD 196 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECT-TSSEEEEEECCCCTTSCGG
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEec-CCCEEEEEEecCCCCCccc
Confidence 466678999999999 666 2333468999999999875 2111111226899999 9999999988776
Q ss_pred -------EEEEeCCCCcE--EEEe---cCCCcEEEEEEeeCCCeEEEEecCC----cEEEEECCCCeeeeeeeEEeeccc
Q 005352 419 -------VRIWAVLSCHV--VDWV---DIRQIVTAVCYRPDGQGGIVGSMMG----DCRFYNVSDNHLELDAEICVHSKK 482 (701)
Q Consensus 419 -------v~iwd~~~~~~--~~~~---~~~~~i~~i~~sp~g~~l~~gs~dg----~v~i~d~~~~~~~~~~~~~~~~~~ 482 (701)
|++|++.+++. .... .+...+..+.|+|+|++|+.++.++ .|.+++..++.... +..
T Consensus 197 ~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~-----l~~-- 269 (695)
T 2bkl_A 197 ERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRL-----LVK-- 269 (695)
T ss_dssp GGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEE-----EEE--
T ss_pred cCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEE-----eec--
Confidence 99999988762 1122 2345788999999999999887766 56677654443221 111
Q ss_pred CCCCCCeeEEEEecCCCCEEEEEE---CCCcEEEEeCCccc----eeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEE
Q 005352 483 KAPCKRITGFQFLPQDSSKVMVSC---ADSQVRILQGPNVI----GKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYM 555 (701)
Q Consensus 483 ~~~~~~i~~l~~~p~~~~~l~~~s---~dg~I~iwd~~~~~----~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~i 555 (701)
+...+....+ + ++.+++.+. .++.|.+||+.+.. ..+........+..++|+ ++.++++...|+..+|
T Consensus 270 --~~~~~~~~~~-~-~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l 344 (695)
T 2bkl_A 270 --GVGAKYEVHA-W-KDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEV 344 (695)
T ss_dssp --CSSCCEEEEE-E-TTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEE
T ss_pred --CCCceEEEEe-c-CCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEE
Confidence 1123444455 5 344444443 25889999987543 223222224567888888 7778889999999888
Q ss_pred EeCC
Q 005352 556 WNCI 559 (701)
Q Consensus 556 Wd~~ 559 (701)
|.++
T Consensus 345 ~~~~ 348 (695)
T 2bkl_A 345 RVAT 348 (695)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 8765
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.28 E-value=3e-10 Score=113.83 Aligned_cols=195 Identities=8% Similarity=-0.029 Sum_probs=136.7
Q ss_pred CeEEEEEecCC-eEE-EEECCCcEEEEECCCCeeeee-ecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEE
Q 005352 356 EILDLSWSKNN-YLL-SASIDKTVRLWRVGNDHCLRV-FPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDW 432 (701)
Q Consensus 356 ~I~~l~~s~~~-~l~-s~s~dg~I~iWd~~~~~~~~~-~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~ 432 (701)
...++++.+++ .++ +...++.|.+||..+...... ..+...+.++++.+ +++++++.. ++.|.+||.........
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~-~~~i~~~d~~~~~~~~~ 102 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDF-NNRVVTLAAGSNNQTVL 102 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECT-TCCEEEEET-TTEEEEECTTCSCCEEC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECC-CCCEEEEcC-CCEEEEEeCCCceEeee
Confidence 67889999998 445 436788999999766543322 12335688999998 888666655 88999999887655433
Q ss_pred e-cCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcE
Q 005352 433 V-DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQV 511 (701)
Q Consensus 433 ~-~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I 511 (701)
. .....+..++++|+|+.+++...++.|.+|+..+...... .......+.++++.+ ++.++++...++.|
T Consensus 103 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~--------~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i 173 (270)
T 1rwi_B 103 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVL--------PFTGLNDPDGVAVDN-SGNVYVTDTDNNRV 173 (270)
T ss_dssp CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEEC--------CCCSCCSCCCEEECT-TCCEEEEEGGGTEE
T ss_pred ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEee--------ccccCCCceeEEEeC-CCCEEEEECCCCEE
Confidence 2 2235789999999998777777788999997654432110 111224577899998 56777776778899
Q ss_pred EEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 005352 512 RILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGH 561 (701)
Q Consensus 512 ~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~ 561 (701)
.+||............+...+..++++++|.++++...++.|++|+..+.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~ 223 (270)
T 1rwi_B 174 VKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGST 223 (270)
T ss_dssp EEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCS
T ss_pred EEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCC
Confidence 99998754443332233467899999999988888778899999997654
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.27 E-value=2.3e-10 Score=116.64 Aligned_cols=238 Identities=11% Similarity=0.044 Sum_probs=154.0
Q ss_pred CCCCeEEEEEeeCCCC-EEEEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeee
Q 005352 393 HSNYVTCVHFNPVDDN-YFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLE 471 (701)
Q Consensus 393 h~~~V~~l~f~p~~~~-~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~ 471 (701)
+.....+++|+| +++ +++++..++.|..||..++ ...+......+.+++++|+|+.+++...++.|.+||..+++..
T Consensus 26 ~~~~~eg~~~d~-~g~~l~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~ 103 (296)
T 3e5z_A 26 GFTWTEGPVYVP-ARSAVIFSDVRQNRTWAWSDDGQ-LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWE 103 (296)
T ss_dssp CCSSEEEEEEEG-GGTEEEEEEGGGTEEEEEETTSC-EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEE
T ss_pred CCccccCCeEeC-CCCEEEEEeCCCCEEEEEECCCC-eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEE
Confidence 456688999999 887 7888888999999999988 5555566778999999999998777777789999999776643
Q ss_pred eeeeEEeecccCCCCCCeeEEEEecCCCCEEEEE----E-------------CCCcEEEEeCCccceeeecccCCCCeEE
Q 005352 472 LDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVS----C-------------ADSQVRILQGPNVIGKYKGLRRSGNQLS 534 (701)
Q Consensus 472 ~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~----s-------------~dg~I~iwd~~~~~~~~~~~~~~~~v~~ 534 (701)
.... .........+..+++.| ++.++++. + ..+.|..++.......+ ..+......
T Consensus 104 ~~~~----~~~~~~~~~~~~i~~d~-~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~--~~~~~~~~g 176 (296)
T 3e5z_A 104 SIAD----SFEGKKLNSPNDVCLAP-DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGTLSAP--IRDRVKPNG 176 (296)
T ss_dssp EEEC----EETTEECCCCCCEEECT-TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSCEEEE--ECCCSSEEE
T ss_pred EEee----ccCCCCCCCCCCEEECC-CCCEEEECCccccccccccccccccCCCcEEEEECCCCCEEEe--ecCCCCCcc
Confidence 2111 10111224567899999 67777763 2 13467777765222222 235567789
Q ss_pred EEEecCCCEEEEEeCCCcEEEEeCC-CCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCcc
Q 005352 535 ACFTSDGKHIVSAGEDSNVYMWNCI-GHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENL 613 (701)
Q Consensus 535 l~~s~dg~~l~sgs~Dg~I~iWd~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 613 (701)
++|+|+|++|++.+.++.|++|++. ++.. . .....+ . .....+..+
T Consensus 177 i~~s~dg~~lv~~~~~~~i~~~~~~~~g~~-~-------~~~~~~----------~---------------~~~~~p~~i 223 (296)
T 3e5z_A 177 LAFLPSGNLLVSDTGDNATHRYCLNARGET-E-------YQGVHF----------T---------------VEPGKTDGL 223 (296)
T ss_dssp EEECTTSCEEEEETTTTEEEEEEECSSSCE-E-------EEEEEE----------C---------------CSSSCCCSE
T ss_pred EEECCCCCEEEEeCCCCeEEEEEECCCCcC-c-------CCCeEe----------e---------------CCCCCCCeE
Confidence 9999999999888888999999987 2220 0 000000 0 001123346
Q ss_pred ccCCCccccCccccccCCCCcccCCCCccCCCCccccccccchhhhhhhhhcccccccccCCCccEEEEecCCCeEeE
Q 005352 614 AFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRS 691 (701)
Q Consensus 614 ~~sp~~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivTgg~DG~Irv 691 (701)
+++++ +..+++. ++++.+|+.+ ...+..+..+ .. +.++++..+.+..|+.++.+|..|+
T Consensus 224 ~~d~~----G~l~v~~--~~~v~~~~~~-g~~~~~~~~~-----------~~-~~~~~f~~~d~~~L~v~t~~~l~~~ 282 (296)
T 3e5z_A 224 RVDAG----GLIWASA--GDGVHVLTPD-GDELGRVLTP-----------QT-TSNLCFGGPEGRTLYMTVSTEFWSI 282 (296)
T ss_dssp EEBTT----SCEEEEE--TTEEEEECTT-SCEEEEEECS-----------SC-CCEEEEESTTSCEEEEEETTEEEEE
T ss_pred EECCC----CCEEEEc--CCeEEEECCC-CCEEEEEECC-----------CC-ceeEEEECCCCCEEEEEcCCeEEEE
Confidence 66775 4445544 6788889875 3334444333 12 5556664333777777777766554
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.26 E-value=9.6e-09 Score=104.19 Aligned_cols=236 Identities=7% Similarity=-0.014 Sum_probs=165.8
Q ss_pred CCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecC
Q 005352 249 HDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTS 328 (701)
Q Consensus 249 H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (701)
....+.+|.+.++|++.++...++.|.+|+.. ++.. .+.
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~-~~~--------------------------------------- 56 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIK-EFE--------------------------------------- 56 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-EEE---------------------------------------
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceE-EEE---------------------------------------
Confidence 45678999999999988887778899999876 3311 110
Q ss_pred CccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeee-ec-CCCCeEEEEEeeC
Q 005352 329 ESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRV-FP-HSNYVTCVHFNPV 405 (701)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~-~~-h~~~V~~l~f~p~ 405 (701)
+..+...+..+++.+++ .+++...++.|..||.. ++.... .. ....+.++++.+
T Consensus 57 ---------------------~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~- 113 (300)
T 2qc5_A 57 ---------------------VPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGL- 113 (300)
T ss_dssp ---------------------CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECS-
T ss_pred ---------------------CCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECC-
Confidence 01123567889999888 45554457889999987 554322 12 346789999998
Q ss_pred CCCEEEEEEcCCcEEEEeCCCCcEEEEe--cCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccC
Q 005352 406 DDNYFISGSIDGKVRIWAVLSCHVVDWV--DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKK 483 (701)
Q Consensus 406 ~~~~l~sgs~dg~v~iwd~~~~~~~~~~--~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~ 483 (701)
+++++++...++.|..||.. ++..... .....+..+++.++++.+++...++.|..|+. ++.... +. ..
T Consensus 114 ~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~----~~ 184 (300)
T 2qc5_A 114 NGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEE---YP----LP 184 (300)
T ss_dssp TTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE---EE----CS
T ss_pred CCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEE---ee----CC
Confidence 88888877668899999987 6655332 23456899999999986666666788999998 443321 11 11
Q ss_pred CCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 005352 484 APCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNC 558 (701)
Q Consensus 484 ~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~ 558 (701)
.....+.++++.+ ++.++++....+.|.+|+.......+........+.+++++++|++.++...++.|..|+.
T Consensus 185 ~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 185 TNAAAPVGITSGN-DGALWFVEIMGNKIGRITTTGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN 258 (300)
T ss_dssp STTCCEEEEEECT-TSSEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT
T ss_pred CCCCCcceEEECC-CCCEEEEccCCCEEEEEcCCCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC
Confidence 2235678999998 5676666666788999998433333333334567899999999997777767789999997
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.25 E-value=7.8e-09 Score=104.90 Aligned_cols=257 Identities=10% Similarity=0.098 Sum_probs=170.2
Q ss_pred ccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCcee
Q 005352 219 CSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCI 298 (701)
Q Consensus 219 ~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~ 298 (701)
...++.|.+|+.. . .+... .+..+...+.+|++.++|.++++...++.|..||.. ++. ..+.
T Consensus 37 ~~~~~~v~~~~~~-~--~~~~~----~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~-~~~~--------- 98 (300)
T 2qc5_A 37 QHKANKISSLDQS-G--RIKEF----EVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF-TEYP--------- 98 (300)
T ss_dssp ETTTTEEEEECTT-S--CEEEE----ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEE---------
T ss_pred cCCCCeEEEECCC-C--ceEEE----ECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe-EEec---------
Confidence 3356888888755 1 11111 122345679999999999888877767889888865 331 1110
Q ss_pred EEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcE
Q 005352 299 YFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTV 377 (701)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I 377 (701)
+......+.++++.+++ ++++...++.|
T Consensus 99 ---------------------------------------------------~~~~~~~~~~i~~~~~g~l~v~~~~~~~i 127 (300)
T 2qc5_A 99 ---------------------------------------------------LPQPDSGPYGITEGLNGDIWFTQLNGDRI 127 (300)
T ss_dssp ---------------------------------------------------CSSTTCCEEEEEECSTTCEEEEETTTTEE
T ss_pred ---------------------------------------------------CCCCCCCCccceECCCCCEEEEccCCCeE
Confidence 01122457888999888 55555557889
Q ss_pred EEEECCCCeeeee-ec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEe--cCCCcEEEEEEeeCCCeEEE
Q 005352 378 RLWRVGNDHCLRV-FP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV--DIRQIVTAVCYRPDGQGGIV 453 (701)
Q Consensus 378 ~iWd~~~~~~~~~-~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~--~~~~~i~~i~~sp~g~~l~~ 453 (701)
..||.. ++.... +. ....+.++++.+ +++++++...++.|..||. +++..... .....+..+++.++|+..++
T Consensus 128 ~~~~~~-g~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~ 204 (300)
T 2qc5_A 128 GKLTAD-GTIYEYDLPNKGSYPAFITLGS-DNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFV 204 (300)
T ss_dssp EEECTT-SCEEEEECSSTTCCEEEEEECT-TSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEE
T ss_pred EEECCC-CCEEEccCCCCCCCceeEEECC-CCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEE
Confidence 999987 554422 22 346789999998 8887776666788999998 55555432 23356889999999977666
Q ss_pred EecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeE
Q 005352 454 GSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQL 533 (701)
Q Consensus 454 gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~ 533 (701)
....+.|.+|+. ++.... .. .......+.++++.+ ++.++++...++.|..||.......+........+.
T Consensus 205 ~~~~~~i~~~~~-~g~~~~---~~----~~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~ 275 (300)
T 2qc5_A 205 EIMGNKIGRITT-TGEISE---YD----IPTPNARPHAITAGK-NSEIWFTEWGANQIGRITNDNTIQEYQLQTENAEPH 275 (300)
T ss_dssp ETTTTEEEEECT-TCCEEE---EE----CSSTTCCEEEEEECS-TTCEEEEETTTTEEEEECTTSCEEEEECCSTTCCCC
T ss_pred ccCCCEEEEEcC-CCcEEE---EE----CCCCCCCceEEEECC-CCCEEEeccCCCeEEEECCCCcEEEEECCccCCccc
Confidence 666778999998 333221 11 112345678999998 566666665679999999854333443333446688
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEeC
Q 005352 534 SACFTSDGKHIVSAGEDSNVYMWNC 558 (701)
Q Consensus 534 ~l~~s~dg~~l~sgs~Dg~I~iWd~ 558 (701)
+++++++|+++++.. . .|..++.
T Consensus 276 ~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 276 GITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp CEEECTTSCEEEECS-S-EEEEEEE
T ss_pred eeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 999999998666655 4 6777764
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.25 E-value=4.1e-10 Score=113.63 Aligned_cols=191 Identities=13% Similarity=0.066 Sum_probs=143.9
Q ss_pred ecCCeEEEEECCCcEEEEECCCCeeeeeecCC--CCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCC--Cc
Q 005352 363 SKNNYLLSASIDKTVRLWRVGNDHCLRVFPHS--NYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIR--QI 438 (701)
Q Consensus 363 s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~h~--~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~--~~ 438 (701)
+|++.|++++.++.|.+||..+++.+..+... ..+.++++.| ++++|+ +.++.|..||. +++.+..+... ..
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~p-dG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~ 78 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATK-AGEILF--SYSKGAKMITR-DGRELWNIAAPAGCE 78 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECT-TSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCE
T ss_pred CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECC-CCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcc
Confidence 35558999999999999999999999998843 3689999999 999888 45788999999 78777544432 47
Q ss_pred EEEEEEeeCCCeEEEEec-CCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCC
Q 005352 439 VTAVCYRPDGQGGIVGSM-MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP 517 (701)
Q Consensus 439 i~~i~~sp~g~~l~~gs~-dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~ 517 (701)
+.++.+.|+|+.+++.+. ++.+..+|. +++......+. .....+......+.+.+ +++++++...++.|..||..
T Consensus 79 ~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~--~~~~~~~~~~~~v~~~~-~G~~lv~~~~~~~v~~~d~~ 154 (276)
T 3no2_A 79 MQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFE--TGIERPHAQFRQINKNK-KGNYLVPLFATSEVREIAPN 154 (276)
T ss_dssp EEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEEC--CSCSSGGGSCSCCEECT-TSCEEEEETTTTEEEEECTT
T ss_pred ccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEecc--CCCCcccccccCceECC-CCCEEEEecCCCEEEEECCC
Confidence 889999999999999887 778888886 45544333221 11111122344556777 78899999999999999987
Q ss_pred ccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCC
Q 005352 518 NVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEE 563 (701)
Q Consensus 518 ~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~ 563 (701)
.....+... ...+.++.+.++|+++++++.+++|..+|..+++.
T Consensus 155 -G~~~w~~~~-~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~ 198 (276)
T 3no2_A 155 -GQLLNSVKL-SGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRI 198 (276)
T ss_dssp -SCEEEEEEC-SSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCE
T ss_pred -CCEEEEEEC-CCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcE
Confidence 554444332 24566778889999999999888999999998873
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=4.4e-10 Score=129.61 Aligned_cols=201 Identities=5% Similarity=-0.008 Sum_probs=135.0
Q ss_pred CCccCeEEEEEecCC-eEEEEECC-C----cEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCc-------
Q 005352 352 GHSGEILDLSWSKNN-YLLSASID-K----TVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGK------- 418 (701)
Q Consensus 352 ~h~~~I~~l~~s~~~-~l~s~s~d-g----~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~------- 418 (701)
+|...+..++|||+| +|+.++.+ | .|++||+.+++.+........+..++|+| +++.|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wsp-Dg~~l~~~~~~~~~~~~~~~ 200 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTH-DGKGMFYNAYPQQDGKSDGT 200 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECT-TSSEEEEEECCCCSSCCSSS
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEe-CCCEEEEEEECCcccccccc
Confidence 355568899999999 66655543 3 89999999998876433223367899999 9999999888766
Q ss_pred ---------EEEEeCCCCcE---EEEec--CCCcEEEEEEeeCCCeEEEEec-----CCcEEEEECCC------Ceeeee
Q 005352 419 ---------VRIWAVLSCHV---VDWVD--IRQIVTAVCYRPDGQGGIVGSM-----MGDCRFYNVSD------NHLELD 473 (701)
Q Consensus 419 ---------v~iwd~~~~~~---~~~~~--~~~~i~~i~~sp~g~~l~~gs~-----dg~v~i~d~~~------~~~~~~ 473 (701)
|++|++.+++. +.... +...+..+.|+|||++|+.++. +..|.+||+.+ +....
T Consensus 201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~- 279 (710)
T 2xdw_A 201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKW- 279 (710)
T ss_dssp CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCC-
T ss_pred ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccce-
Confidence 99999988762 21121 3455789999999999988775 56899999975 32111
Q ss_pred eeEEeecccCCCCCCeeEEEEecCCCCEEEEEECC----CcEEEEeCCccc----eeeecccCCCCeEEEEEecCCCEEE
Q 005352 474 AEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD----SQVRILQGPNVI----GKYKGLRRSGNQLSACFTSDGKHIV 545 (701)
Q Consensus 474 ~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~d----g~I~iwd~~~~~----~~~~~~~~~~~v~~l~~s~dg~~l~ 545 (701)
. .+.. +...+.. .|+| ++..|+..+.. ..|.+||+.+.. ..+........+..++|++++.+++
T Consensus 280 ~--~l~~----~~~~~~~-~~s~-dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~ 351 (710)
T 2xdw_A 280 V--KLID----NFEGEYD-YVTN-EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVL 351 (710)
T ss_dssp E--EEEC----SSSSCEE-EEEE-ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEE
T ss_pred E--EeeC----CCCcEEE-EEec-cCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEE
Confidence 0 1111 1122333 4777 45555555542 369999987643 2232221223678899998888888
Q ss_pred EEeCCCc--EEEEeCCCCC
Q 005352 546 SAGEDSN--VYMWNCIGHE 562 (701)
Q Consensus 546 sgs~Dg~--I~iWd~~~~~ 562 (701)
+...|+. |++|++.+++
T Consensus 352 ~~~~~g~~~l~~~~~~~g~ 370 (710)
T 2xdw_A 352 CYLHDVKNTLQLHDLATGA 370 (710)
T ss_dssp EEEETTEEEEEEEETTTCC
T ss_pred EEEECCEEEEEEEECCCCC
Confidence 9888885 5666765554
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.21 E-value=2.6e-10 Score=119.57 Aligned_cols=188 Identities=9% Similarity=-0.006 Sum_probs=131.7
Q ss_pred cEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCcc
Q 005352 252 SILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESA 331 (701)
Q Consensus 252 ~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (701)
.+..+++++...+|++|+.++ +++|++........-. .. .
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~--~~-------------------------------------~ 78 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSD--ST-------------------------------------P 78 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSS--SC-------------------------------------C
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccc--cc-------------------------------------c
Confidence 688999999999999999985 6669986543100000 00 0
Q ss_pred EEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeee-cCCCCeEEEEEeeCCCCE
Q 005352 332 CVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVF-PHSNYVTCVHFNPVDDNY 409 (701)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~-~h~~~V~~l~f~p~~~~~ 409 (701)
+ .+.... .+.. |+.|+| ++ .|+++ .++.|++||+.+....... .+...+.++.+.+ . .
T Consensus 79 --------~----~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~-p--~ 138 (388)
T 1xip_A 79 --------L----TFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVN-N--T 138 (388)
T ss_dssp --------C----CCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECS-S--E
T ss_pred --------c----cceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecC-C--C
Confidence 0 111122 2556 999999 55 77777 8899999999876654444 3677788887765 2 3
Q ss_pred EEEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeeccc---CCCC
Q 005352 410 FISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKK---KAPC 486 (701)
Q Consensus 410 l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~---~~~~ 486 (701)
++++..||.|.+||+.+++... +...|++++|+|+| +++|..||++++|+...........+...... ..+.
T Consensus 139 ~av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~ 213 (388)
T 1xip_A 139 LVILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEE 213 (388)
T ss_dssp EEEEETTSEEEEEETTTCCEEE---EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTT
T ss_pred EEEEECCCCEEEEEccCCcccc---ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCC
Confidence 8888999999999999887654 34689999999999 78899999999999887664211111111111 1356
Q ss_pred CCeeEEEEecCCCCEEEEE
Q 005352 487 KRITGFQFLPQDSSKVMVS 505 (701)
Q Consensus 487 ~~i~~l~~~p~~~~~l~~~ 505 (701)
..|.+++|.+ +..++++-
T Consensus 214 ~~V~sI~wl~-~~~flv~y 231 (388)
T 1xip_A 214 YSPLSVTILS-PQDFLAVF 231 (388)
T ss_dssp SEEEEEEESS-SSEEEEEE
T ss_pred eeEEEEEEec-CCeEEEEE
Confidence 8899999999 56666653
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.21 E-value=1.6e-09 Score=113.06 Aligned_cols=271 Identities=13% Similarity=0.061 Sum_probs=171.9
Q ss_pred cceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEe----------CCCcEEEEEeecCeeeeeecCC
Q 005352 222 VQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAG----------DDGVVRLWQVVEDERLTEVDIP 291 (701)
Q Consensus 222 d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs----------~Dg~I~iWd~~~~~~~~~~~~~ 291 (701)
++.|.+.|...... ...+.....+ . |+++|||++|+.+. .++.|.+||..+.+.+.++...
T Consensus 58 ~~~V~ViD~~t~~v-------~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~ 128 (386)
T 3sjl_D 58 VTQQFVIDGEAGRV-------IGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELP 128 (386)
T ss_dssp SEEEEEEETTTTEE-------EEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEET
T ss_pred CCEEEEEECCCCeE-------EEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECC
Confidence 57888888653221 1233334445 3 99999999887775 3678999999988765554322
Q ss_pred CCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEE
Q 005352 292 EIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLS 370 (701)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s 370 (701)
... . ......-..+.++|+| +++.
T Consensus 129 ~g~---------------------------------------------------r----~~~g~~P~~~a~spDGk~lyV 153 (386)
T 3sjl_D 129 DAP---------------------------------------------------R----FLVGTYPWMTSLTPDGKTLLF 153 (386)
T ss_dssp TCC---------------------------------------------------C----CCBSCCGGGEEECTTSSEEEE
T ss_pred Ccc---------------------------------------------------c----cccCCCCceEEEcCCCCEEEE
Confidence 100 0 0001123467899999 7777
Q ss_pred EEC--CCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCC-CcEEEEec-C----CCcEE-E
Q 005352 371 ASI--DKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS-CHVVDWVD-I----RQIVT-A 441 (701)
Q Consensus 371 ~s~--dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~-~~~~~~~~-~----~~~i~-~ 441 (701)
+.. ++.|.++|+.+++.+..+.-.+. ..+.|.....|++.+.||++.+.++.+ +++..... . ..++. .
T Consensus 154 an~~~~~~VsVID~~t~~vv~tI~v~g~---~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~ 230 (386)
T 3sjl_D 154 YQFSPAPAVGVVDLEGKAFKRMLDVPDC---YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINH 230 (386)
T ss_dssp EECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSC
T ss_pred EEcCCCCeEEEEECCCCcEEEEEECCCc---ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceecccccccccc
Confidence 664 68999999999999999875442 223353667888889999999999976 55432111 1 11221 2
Q ss_pred EEEe-eCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecc----cCCCCCCeeEEEEecCCCCEEEEEEC---------
Q 005352 442 VCYR-PDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSK----KKAPCKRITGFQFLPQDSSKVMVSCA--------- 507 (701)
Q Consensus 442 i~~s-p~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~----~~~~~~~i~~l~~~p~~~~~l~~~s~--------- 507 (701)
..|. ++|++++ .+.+|.|.+.|+.+........+.+... .......+..+++++ +++.+++...
T Consensus 231 ~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~-~~~~lyV~~~~~~~~~hk~ 308 (386)
T 3sjl_D 231 PAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHR-ALDRIYLLVDQRDEWRHKT 308 (386)
T ss_dssp CEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEET-TTTEEEEEEEECCTTCTTS
T ss_pred ceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECC-CCCeEEEEeccccccccCC
Confidence 4554 5775555 5568999999998765433332221110 011112334567788 4555555432
Q ss_pred -CCcEEEEeCCccceeeecccCCCCeEEEEEecCCC-EEEEE-eCCCcEEEEeCCCCC
Q 005352 508 -DSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGK-HIVSA-GEDSNVYMWNCIGHE 562 (701)
Q Consensus 508 -dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~-~l~sg-s~Dg~I~iWd~~~~~ 562 (701)
.+.|.++|..+........ -...+.++++++|++ +|+++ ..++.|.++|..+++
T Consensus 309 ~~~~V~viD~~t~kv~~~i~-vg~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k 365 (386)
T 3sjl_D 309 ASRFVVVLDAKTGERLAKFE-MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGE 365 (386)
T ss_dssp CEEEEEEEETTTCCEEEEEE-EEEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred CCCEEEEEECCCCeEEEEEE-CCCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCc
Confidence 2579999998765444332 223678999999997 67665 458999999998887
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.20 E-value=1.4e-09 Score=113.96 Aligned_cols=172 Identities=8% Similarity=-0.034 Sum_probs=120.6
Q ss_pred eecCccccccccccceEEEEEccCccchhh---hcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeee
Q 005352 209 VRLNEEDAMFCSKVQRVKVYHCKKRSKELS---ALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERL 285 (701)
Q Consensus 209 ~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~---~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~ 285 (701)
++.....+++|+. ..++||+.+...+... .-+.......+.+ |+.|+| |+.+|+++ .++.|++||+.+....
T Consensus 45 is~~~gll~a~~~-~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~ 119 (388)
T 1xip_A 45 ISNSKSLFVAASG-SKAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEF 119 (388)
T ss_dssp EETTTTEEEEEET-TEEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCE
T ss_pred EcCCCCEEEEeCC-CEEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhcc
Confidence 3333444444444 5677798653321110 0011112334677 999999 99999999 8899999998765311
Q ss_pred eeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecC
Q 005352 286 TEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN 365 (701)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~ 365 (701)
..+..|...+.++.+.+.
T Consensus 120 --------------------------------------------------------------~~~~~~~~~v~~i~~~~p 137 (388)
T 1xip_A 120 --------------------------------------------------------------RTVTSFEKPVFQLKNVNN 137 (388)
T ss_dssp --------------------------------------------------------------EEEEECSSCEEEEEECSS
T ss_pred --------------------------------------------------------------CccceeecceeeEEecCC
Confidence 112234455667766654
Q ss_pred CeEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcE--EEEe----------
Q 005352 366 NYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHV--VDWV---------- 433 (701)
Q Consensus 366 ~~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~--~~~~---------- 433 (701)
. +++++.||.|.+||+.++.... +...|+|++|+| ++ ++.|..||++++|+...+++ ...+
T Consensus 138 ~-~av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSp-kG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~ 210 (388)
T 1xip_A 138 T-LVILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTN-SQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELP 210 (388)
T ss_dssp E-EEEEETTSEEEEEETTTCCEEE---EEESEEEEEECS-SE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSC
T ss_pred C-EEEEECCCCEEEEEccCCcccc---ccCCceEEEEcC-Cc--eEEEEcCCcEEEEcCCCccccccceecCCccccccc
Confidence 3 8889999999999999887654 446899999999 77 77899999999999988775 4333
Q ss_pred cCCCcEEEEEEeeCCCeEEEE
Q 005352 434 DIRQIVTAVCYRPDGQGGIVG 454 (701)
Q Consensus 434 ~~~~~i~~i~~sp~g~~l~~g 454 (701)
.+...|.+|+|.+++.++++=
T Consensus 211 ~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 211 VEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp TTTSEEEEEEESSSSEEEEEE
T ss_pred CCCeeEEEEEEecCCeEEEEE
Confidence 257889999999999888773
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.19 E-value=4.4e-09 Score=112.43 Aligned_cols=242 Identities=12% Similarity=0.053 Sum_probs=160.9
Q ss_pred CcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCc
Q 005352 251 GSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSES 330 (701)
Q Consensus 251 ~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (701)
.....|+|+++|+++++...++.|++||..++......
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~------------------------------------------ 168 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVH------------------------------------------ 168 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEE------------------------------------------
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEee------------------------------------------
Confidence 46889999999998888877899999998776422111
Q ss_pred cEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCC--cEEEEECCCCeeeeee----c-CCCCeEEEEE
Q 005352 331 ACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDK--TVRLWRVGNDHCLRVF----P-HSNYVTCVHF 402 (701)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg--~I~iWd~~~~~~~~~~----~-h~~~V~~l~f 402 (701)
.. ..... ++|++++ .|+++..++ .|.+|+...+.....+ . ....+.++++
T Consensus 169 --------------------~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav 226 (409)
T 3hrp_A 169 --------------------PG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVAL 226 (409)
T ss_dssp --------------------ET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEE
T ss_pred --------------------cc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEE
Confidence 11 11223 7899998 788877765 7899988766554444 3 4566889999
Q ss_pred eeCCCCEEEEEEcCCcEEEEeCCCCcEEEE----ec-CCCcE-E-EEEEeeC-CCeEEEEecCCcEEEEECCCCeeeeee
Q 005352 403 NPVDDNYFISGSIDGKVRIWAVLSCHVVDW----VD-IRQIV-T-AVCYRPD-GQGGIVGSMMGDCRFYNVSDNHLELDA 474 (701)
Q Consensus 403 ~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~----~~-~~~~i-~-~i~~sp~-g~~l~~gs~dg~v~i~d~~~~~~~~~~ 474 (701)
+| ++..|+.+..++.|+.||..++..... .. ..... . .++|+|+ +..+++-..++.|+.|+.........-
T Consensus 227 ~p-~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~~~~~g 305 (409)
T 3hrp_A 227 DE-TEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGECEWFCG 305 (409)
T ss_dssp CT-TSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEE
T ss_pred eC-CCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCCEEEEEe
Confidence 99 555666677788999999987764433 11 11111 3 8999995 555555666888999998754211100
Q ss_pred eEEeec-----ccCCCCCCeeEEEEecCCCCEEEEEE-CCCcEEEEeCCccc-eeeeccc-------------CCCCeEE
Q 005352 475 EICVHS-----KKKAPCKRITGFQFLPQDSSKVMVSC-ADSQVRILQGPNVI-GKYKGLR-------------RSGNQLS 534 (701)
Q Consensus 475 ~~~~~~-----~~~~~~~~i~~l~~~p~~~~~l~~~s-~dg~I~iwd~~~~~-~~~~~~~-------------~~~~v~~ 534 (701)
...... ..........++++.| ++.++++-. .++.|+.|+..+.. ..+.+.. .......
T Consensus 306 ~~~~~g~~dg~~~~~~~~~P~gia~d~-dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~g 384 (409)
T 3hrp_A 306 SATQKTVQDGLREEALFAQPNGMTVDE-DGNFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYD 384 (409)
T ss_dssp CTTCCSCBCEEGGGCBCSSEEEEEECT-TCCEEEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEE
T ss_pred CCCCCCcCCCcccccEeCCCeEEEEeC-CCCEEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceE
Confidence 000000 0001134578999999 577777777 88999999954332 2222210 1246889
Q ss_pred EEEecCCCEEEEEeCCCcEEEEeC
Q 005352 535 ACFTSDGKHIVSAGEDSNVYMWNC 558 (701)
Q Consensus 535 l~~s~dg~~l~sgs~Dg~I~iWd~ 558 (701)
++++++|.++++-..++.|+.+++
T Consensus 385 iavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 385 ICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EEECSSSEEEEEESTTCEEEEEEE
T ss_pred EEEcCCCCEEEEECCCCeEEEEEe
Confidence 999999888888888889988875
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.18 E-value=4.5e-09 Score=107.69 Aligned_cols=233 Identities=11% Similarity=0.058 Sum_probs=151.9
Q ss_pred eccCCCcEEEEEEccCCC-EEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEe
Q 005352 246 IQAHDGSILTMKFSPDGQ-YLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSL 324 (701)
Q Consensus 246 l~~H~~~I~~l~fspdg~-~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (701)
+..+........|+|+|+ ++++...++.|..|+. +++
T Consensus 40 l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~----------------------------------------- 77 (305)
T 3dr2_A 40 LYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT----------------------------------------- 77 (305)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-----------------------------------------
T ss_pred EecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-----------------------------------------
Confidence 444556678899999998 5677777889999986 332
Q ss_pred eecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCCeEEEEE-CCCcEEEEECCCCeeeeeec-----CCCCeE
Q 005352 325 RRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSAS-IDKTVRLWRVGNDHCLRVFP-----HSNYVT 398 (701)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~l~s~s-~dg~I~iWd~~~~~~~~~~~-----h~~~V~ 398 (701)
...+..+...+..+++.++|.|+.+. .++.|.+|+.. ++...... ....+.
T Consensus 78 ----------------------~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~ 134 (305)
T 3dr2_A 78 ----------------------VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPN 134 (305)
T ss_dssp ----------------------EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCC
T ss_pred ----------------------EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCC
Confidence 11122244567899999999555555 45789999986 54333222 123567
Q ss_pred EEEEeeCCCCEEEE----EEc-------------CCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecC----
Q 005352 399 CVHFNPVDDNYFIS----GSI-------------DGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMM---- 457 (701)
Q Consensus 399 ~l~f~p~~~~~l~s----gs~-------------dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~d---- 457 (701)
.+++.| +++++++ |.. .+.|..||..+++..... .......++|+|+++.|+++...
T Consensus 135 ~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~ 212 (305)
T 3dr2_A 135 DLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGH 212 (305)
T ss_dssp CEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEECTTSSEEEEEECCC---
T ss_pred CEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcCCCCEEEEEecCCcCC
Confidence 899999 8988886 321 256888888777655444 44567889999999988887665
Q ss_pred --CcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCcc-ceeeecccCCCCeEE
Q 005352 458 --GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV-IGKYKGLRRSGNQLS 534 (701)
Q Consensus 458 --g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~-~~~~~~~~~~~~v~~ 534 (701)
+.|.+|++....+. ........ ......++++.+ +++ |.++..+ .|.+|+.... ...+.. + ..+.+
T Consensus 213 ~~~~i~~~~~~~~~l~-~~~~~~~~----~~~~pdgi~~d~-~G~-lwv~~~~-gv~~~~~~g~~~~~~~~--~-~~~~~ 281 (305)
T 3dr2_A 213 GSVEITAFAWRDGALH-DRRHFASV----PDGLPDGFCVDR-GGW-LWSSSGT-GVCVFDSDGQLLGHIPT--P-GTASN 281 (305)
T ss_dssp CCCEEEEEEEETTEEE-EEEEEECC----SSSCCCSEEECT-TSC-EEECCSS-EEEEECTTSCEEEEEEC--S-SCCCE
T ss_pred CCCEEEEEEecCCCcc-CCeEEEEC----CCCCCCeEEECC-CCC-EEEecCC-cEEEECCCCCEEEEEEC--C-CceeE
Confidence 68999998765521 11111111 123456788888 566 4444444 5999997532 222222 2 25889
Q ss_pred EEEecCCCEEEEEeCCCcEEEEe
Q 005352 535 ACFTSDGKHIVSAGEDSNVYMWN 557 (701)
Q Consensus 535 l~~s~dg~~l~sgs~Dg~I~iWd 557 (701)
++|+++++.|+.++.++ ++.++
T Consensus 282 ~~f~~d~~~L~it~~~~-l~~~~ 303 (305)
T 3dr2_A 282 CTFDQAQQRLFITGGPC-LWMLP 303 (305)
T ss_dssp EEECTTSCEEEEEETTE-EEEEE
T ss_pred EEEeCCCCEEEEEcCCe-EEEEE
Confidence 99999999888887764 44333
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.18 E-value=2.4e-08 Score=101.84 Aligned_cols=231 Identities=8% Similarity=0.043 Sum_probs=149.9
Q ss_pred CCCcEEEEEEccC-CCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeec
Q 005352 249 HDGSILTMKFSPD-GQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRT 327 (701)
Q Consensus 249 H~~~I~~l~fspd-g~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (701)
+..-.-+..|+|+ +.++++...++.|..||..+++..
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~------------------------------------------ 48 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ------------------------------------------ 48 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE------------------------------------------
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE------------------------------------------
Confidence 3445668899995 456666677889999998765310
Q ss_pred CCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCCeEEEEECCCcEEEEECCCCeeeeeecC-----CCCeEEEEE
Q 005352 328 SESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPH-----SNYVTCVHF 402 (701)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~h-----~~~V~~l~f 402 (701)
.+ .+...+.++++++++.|+.+. ++.|.+||..+++....... ...++.+++
T Consensus 49 ---------------------~~-~~~~~~~~i~~~~dG~l~v~~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~ 105 (297)
T 3g4e_A 49 ---------------------RV-TMDAPVSSVALRQSGGYVATI-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKV 105 (297)
T ss_dssp ---------------------EE-ECSSCEEEEEEBTTSSEEEEE-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEE
T ss_pred ---------------------EE-eCCCceEEEEECCCCCEEEEE-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEE
Confidence 01 123568899999999544444 56899999988876544331 245889999
Q ss_pred eeCCCCEEEEEEcC---------CcEEEEeCC-CCcEEEEecCCCcEEEEEEeeCCCeEEE-EecCCcEEEEECC--CCe
Q 005352 403 NPVDDNYFISGSID---------GKVRIWAVL-SCHVVDWVDIRQIVTAVCYRPDGQGGIV-GSMMGDCRFYNVS--DNH 469 (701)
Q Consensus 403 ~p~~~~~l~sgs~d---------g~v~iwd~~-~~~~~~~~~~~~~i~~i~~sp~g~~l~~-gs~dg~v~i~d~~--~~~ 469 (701)
+| +++++++.... ..-.||.+. .++...........+.++|+|+++.|++ .+.++.|..|++. ++.
T Consensus 106 d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~ 184 (297)
T 3g4e_A 106 DP-AGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQ 184 (297)
T ss_dssp CT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCC
T ss_pred CC-CCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCc
Confidence 99 88877654322 223455443 2444444444456789999999987755 4557889999973 444
Q ss_pred eeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEe-cCCCEEEEEe
Q 005352 470 LELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFT-SDGKHIVSAG 548 (701)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s-~dg~~l~sgs 548 (701)
+.....+.. .........++++.+ ++.+.++....+.|.+||..+.........+...+++++|. |+++.|+.++
T Consensus 185 ~~~~~~~~~---~~~~~~~p~g~~~d~-~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 185 ISNRRSVYK---LEKEEQIPDGMCIDA-EGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp EEEEEEEEE---CCGGGCEEEEEEEBT-TSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEE
T ss_pred ccCcEEEEE---CCCCCCCCCeeEECC-CCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEc
Confidence 321111111 111224577899988 57777777778899999987444333333355679999998 8888776554
Q ss_pred C
Q 005352 549 E 549 (701)
Q Consensus 549 ~ 549 (701)
.
T Consensus 261 ~ 261 (297)
T 3g4e_A 261 A 261 (297)
T ss_dssp B
T ss_pred C
Confidence 3
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.18 E-value=2.6e-08 Score=103.01 Aligned_cols=186 Identities=12% Similarity=0.029 Sum_probs=119.9
Q ss_pred cCeEEEEEecCCeEEEEECCCcEEEEECCCCeeeeeecC-----CCCeEEEEEeeCCCCEEEEEEc------CCcEEEEe
Q 005352 355 GEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPH-----SNYVTCVHFNPVDDNYFISGSI------DGKVRIWA 423 (701)
Q Consensus 355 ~~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~h-----~~~V~~l~f~p~~~~~l~sgs~------dg~v~iwd 423 (701)
..+.+++|++++.++.++.+ .|.+||..+++....... ...+.+++++| +++++++... .+.|..++
T Consensus 90 ~~v~~i~~~~dg~l~v~~~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~ 167 (326)
T 2ghs_A 90 FMGSALAKISDSKQLIASDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA 167 (326)
T ss_dssp SCEEEEEEEETTEEEEEETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE
T ss_pred CcceEEEEeCCCeEEEEECC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECC-CCCEEEEeCCCcCCCCceEEEEEe
Confidence 46889999999944445554 499999988876443321 23588999999 8887765542 24566666
Q ss_pred CCCCcEEEEecCCCcEEEEEEeeCCCeEEEE-ecCCcEEEEECC--CC-eeeeeeeEEeecccCCCCCCeeEEEEecCCC
Q 005352 424 VLSCHVVDWVDIRQIVTAVCYRPDGQGGIVG-SMMGDCRFYNVS--DN-HLELDAEICVHSKKKAPCKRITGFQFLPQDS 499 (701)
Q Consensus 424 ~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g-s~dg~v~i~d~~--~~-~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~ 499 (701)
+++.............++|+|+++.++++ +.++.|.+|++. ++ .......+. . .........++++.+ ++
T Consensus 168 --~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~--~-~~~~~~~p~gi~~d~-~G 241 (326)
T 2ghs_A 168 --KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFI--D-STGIKGGMDGSVCDA-EG 241 (326)
T ss_dssp --TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEE--E-CTTSSSEEEEEEECT-TS
T ss_pred --CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEE--E-CCCCCCCCCeeEECC-CC
Confidence 55554444444567899999999877655 457889999986 44 321111111 0 111224467888888 56
Q ss_pred CEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEe-cCCCEEEEEeC
Q 005352 500 SKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFT-SDGKHIVSAGE 549 (701)
Q Consensus 500 ~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s-~dg~~l~sgs~ 549 (701)
.+.++...++.|.+||... ........+...+++++|+ ++++.|+.++.
T Consensus 242 ~lwva~~~~~~v~~~d~~g-~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 242 HIWNARWGEGAVDRYDTDG-NHIARYEVPGKQTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp CEEEEEETTTEEEEECTTC-CEEEEEECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred CEEEEEeCCCEEEEECCCC-CEEEEEECCCCCcEEEEEecCCCCEEEEEec
Confidence 7777666778999999742 2222222245579999998 88877755543
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=2.4e-09 Score=122.94 Aligned_cols=240 Identities=13% Similarity=0.116 Sum_probs=151.4
Q ss_pred cCCCcEEEEEEccCCCEEEE-----EeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeE
Q 005352 248 AHDGSILTMKFSPDGQYLAS-----AGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (701)
Q Consensus 248 ~H~~~I~~l~fspdg~~Las-----gs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (701)
+|...+..++|||||++||- |+....|++||+.+++.+..
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~----------------------------------- 170 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET----------------------------------- 170 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-----------------------------------
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-----------------------------------
Confidence 46678999999999999884 33346799999988763211
Q ss_pred EeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCC-------------cEEEEECCCCee-
Q 005352 323 SLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDK-------------TVRLWRVGNDHC- 387 (701)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg-------------~I~iWd~~~~~~- 387 (701)
.+.+ .....++|+ ++ .|+.++.+. .|++|++.+...
T Consensus 171 --------------------------~~~~--~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~ 221 (693)
T 3iuj_A 171 --------------------------PLKD--VKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQED 221 (693)
T ss_dssp --------------------------EEEE--EESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGG
T ss_pred --------------------------ccCC--ceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCccc
Confidence 0010 112456899 88 777777664 399999987653
Q ss_pred -eeeec----CCCCeEEEEEeeCCCCEEEEEEc----CCcEEEEeCCCC--cEEEEecCCCcEEEEEEeeCCCeEEEEec
Q 005352 388 -LRVFP----HSNYVTCVHFNPVDDNYFISGSI----DGKVRIWAVLSC--HVVDWVDIRQIVTAVCYRPDGQGGIVGSM 456 (701)
Q Consensus 388 -~~~~~----h~~~V~~l~f~p~~~~~l~sgs~----dg~v~iwd~~~~--~~~~~~~~~~~i~~i~~sp~g~~l~~gs~ 456 (701)
...+. +...+..+.|+| ++++|+.... ...|+++|+.++ +...+..+....... ++++|..|+..+.
T Consensus 222 ~~~v~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~ 299 (693)
T 3iuj_A 222 DRLVFGAIPAQHHRYVGATVTE-DDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTN 299 (693)
T ss_dssp CEEEESCSGGGCCSEEEEEECT-TSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEEC
T ss_pred ceEEEecCCCCCeEEEEEEEcC-CCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEEC
Confidence 23333 234578899999 8988765443 248999999776 455555555555554 6677766665543
Q ss_pred ----CCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEE-CCC--cEEEEeCCccceeeecccCC
Q 005352 457 ----MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSC-ADS--QVRILQGPNVIGKYKGLRRS 529 (701)
Q Consensus 457 ----dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s-~dg--~I~iwd~~~~~~~~~~~~~~ 529 (701)
.+.|..+++.+.....-..+.. +...+. .|+++ ++.|+... .++ .|++|+..............
T Consensus 300 ~~~~~~~l~~~d~~~~~~~~~~~l~~------~~~~~~--~~s~~-g~~lv~~~~~~g~~~l~~~d~~g~~~~~l~~p~~ 370 (693)
T 3iuj_A 300 RDAPNRRLVTVDAANPGPAHWRDLIP------ERQQVL--TVHSG-SGYLFAEYMVDATARVEQFDYEGKRVREVALPGL 370 (693)
T ss_dssp TTCTTCEEEEEETTSCCGGGCEEEEC------CCSSCE--EEEEE-TTEEEEEEEETTEEEEEEECTTSCEEEEECCSSS
T ss_pred CCCCCCEEEEEeCCCCCccccEEEec------CCCCEE--EEEEE-CCEEEEEEEECCeeEEEEEECCCCeeEEeecCCC
Confidence 3578999998754310011111 112233 77884 55555554 454 68888876433222222244
Q ss_pred CCeEEEEEecCCCEEEEEeCC----CcEEEEeCCCCC
Q 005352 530 GNQLSACFTSDGKHIVSAGED----SNVYMWNCIGHE 562 (701)
Q Consensus 530 ~~v~~l~~s~dg~~l~sgs~D----g~I~iWd~~~~~ 562 (701)
..+..+.++++++.|+....+ +.|+.||+.+++
T Consensus 371 ~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 371 GSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp SEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred ceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 567778888888766655444 789999998765
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.12 E-value=4.7e-09 Score=111.51 Aligned_cols=271 Identities=11% Similarity=0.058 Sum_probs=175.4
Q ss_pred ceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEe----------CCCcEEEEEeecCeeeeeecCCC
Q 005352 223 QRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAG----------DDGVVRLWQVVEDERLTEVDIPE 292 (701)
Q Consensus 223 ~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs----------~Dg~I~iWd~~~~~~~~~~~~~~ 292 (701)
+.|.++|...... ...+..-..+ .|.++|||++|+.+. .++.|.++|..+.+.+.++.+..
T Consensus 99 ~~VsVID~~t~~v-------v~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g 169 (426)
T 3c75_H 99 TQQFVIDGSTGRI-------LGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPD 169 (426)
T ss_dssp EEEEEEETTTTEE-------EEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETT
T ss_pred CeEEEEECCCCEE-------EEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCC
Confidence 7899998654321 1223333445 799999999888775 46789999998887665543220
Q ss_pred CCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEE
Q 005352 293 IDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSA 371 (701)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~ 371 (701)
.. . + ........+.++|++ +|+.+
T Consensus 170 ~~--------------------------------------------------r----~-~~g~~P~~~~~spDGk~lyV~ 194 (426)
T 3c75_H 170 AP--------------------------------------------------R----F-LVGTYQWMNALTPDNKNLLFY 194 (426)
T ss_dssp CC--------------------------------------------------C----C-CBSCCGGGSEECTTSSEEEEE
T ss_pred cc--------------------------------------------------c----c-ccCCCcceEEEcCCCCEEEEE
Confidence 00 0 0 001123456899999 77777
Q ss_pred EC--CCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEE----ecC-CCc-EEEEE
Q 005352 372 SI--DKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDW----VDI-RQI-VTAVC 443 (701)
Q Consensus 372 s~--dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~----~~~-~~~-i~~i~ 443 (701)
.. ++.|.+.|+.+++.+..+.-... ....|.....+++.+.||.+.+.++.++++... +.. ..+ ...+.
T Consensus 195 n~~~~~~VsVID~~t~kvv~~I~v~g~---~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~ 271 (426)
T 3c75_H 195 QFSPAPAVGVVDLEGKTFDRMLDVPDC---YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPA 271 (426)
T ss_dssp ECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCE
T ss_pred ecCCCCeEEEEECCCCeEEEEEEcCCc---eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEee
Confidence 64 57899999999999988875442 334453457778888899999889866655421 111 111 12356
Q ss_pred EeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccC----CCCCCeeEEEEecCCCCEEEEEEC----------CC
Q 005352 444 YRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKK----APCKRITGFQFLPQDSSKVMVSCA----------DS 509 (701)
Q Consensus 444 ~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~----~~~~~i~~l~~~p~~~~~l~~~s~----------dg 509 (701)
|.+++..++..+..+.+.+.|+..........+....... ........+.++| ++..+++... .+
T Consensus 272 ~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~-dg~rlyVa~~~~~~gthk~~s~ 350 (426)
T 3c75_H 272 FSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHR-QSDRIYLLVDQRDEWKHKAASR 350 (426)
T ss_dssp ECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEG-GGTEEEEEEEECCTTCTTSCEE
T ss_pred ecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcC-CCCEEEEEecccccccccCCCC
Confidence 7899988888888999999999766543322222110000 0011122368899 4555554432 35
Q ss_pred cEEEEeCCccceeeecccCCCCeEEEEEecCCC-EEEEEe-CCCcEEEEeCCCCC
Q 005352 510 QVRILQGPNVIGKYKGLRRSGNQLSACFTSDGK-HIVSAG-EDSNVYMWNCIGHE 562 (701)
Q Consensus 510 ~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~-~l~sgs-~Dg~I~iWd~~~~~ 562 (701)
.|.++|..+....-... -......+.|+|||+ +++++. .++.|.++|..+.+
T Consensus 351 ~VsVID~~T~kvv~~I~-vg~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~k 404 (426)
T 3c75_H 351 FVVVLNAETGERINKIE-LGHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGE 404 (426)
T ss_dssp EEEEEETTTCCEEEEEE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred EEEEEECCCCeEEEEEE-CCCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCC
Confidence 79999998665444332 123578899999999 888888 58999999999887
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.12 E-value=6.5e-09 Score=108.45 Aligned_cols=242 Identities=10% Similarity=0.025 Sum_probs=153.6
Q ss_pred EEEecCC-eEEEEE----------CCCcEEEEECCCCeeeeeecCC--------CCeEEEEEeeCCCCEEEEEEc--CCc
Q 005352 360 LSWSKNN-YLLSAS----------IDKTVRLWRVGNDHCLRVFPHS--------NYVTCVHFNPVDDNYFISGSI--DGK 418 (701)
Q Consensus 360 l~~s~~~-~l~s~s----------~dg~I~iWd~~~~~~~~~~~h~--------~~V~~l~f~p~~~~~l~sgs~--dg~ 418 (701)
++++|++ +++.++ .++.|.+||..+.+.+..+.-. .....++|+| ++++++++.. ++.
T Consensus 83 va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~sp-DGk~lyVan~~~~~~ 161 (386)
T 3sjl_D 83 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTP-DGKTLLFYQFSPAPA 161 (386)
T ss_dssp EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECT-TSSEEEEEECSSSCE
T ss_pred EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcC-CCCEEEEEEcCCCCe
Confidence 8999999 565554 3678999999999998887521 2566799999 9999888864 689
Q ss_pred EEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCC-CeeeeeeeEEeecccCCCCCCe-eEEEEec
Q 005352 419 VRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSD-NHLELDAEICVHSKKKAPCKRI-TGFQFLP 496 (701)
Q Consensus 419 v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~-~~~~~~~~~~~~~~~~~~~~~i-~~l~~~p 496 (701)
|.++|+.+++++..+...+. ...+....+.+++.+.||.+.+.++.. ++..... ..........+ ....|.+
T Consensus 162 VsVID~~t~~vv~tI~v~g~--~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~----~~~~~~~~~~~~~~~~~~~ 235 (386)
T 3sjl_D 162 VGVVDLEGKAFKRMLDVPDC--YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITH----TEVFHPEDEFLINHPAYSQ 235 (386)
T ss_dssp EEEEETTTTEEEEEEECCSE--EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEE----CCCCSCTTSCBCSCCEEET
T ss_pred EEEEECCCCcEEEEEECCCc--ceeecCCCceeEEECCCCCEEEEECCCCCeEEEee----cceeccccccccccceeEc
Confidence 99999999999877765543 223333456777888899999999876 4442111 01111111122 2235654
Q ss_pred CCCCEEEEEECCCcEEEEeCCccce----eeecc--------cCCCCeEEEEEecCCCEEEEEeC----------CCcEE
Q 005352 497 QDSSKVMVSCADSQVRILQGPNVIG----KYKGL--------RRSGNQLSACFTSDGKHIVSAGE----------DSNVY 554 (701)
Q Consensus 497 ~~~~~l~~~s~dg~I~iwd~~~~~~----~~~~~--------~~~~~v~~l~~s~dg~~l~sgs~----------Dg~I~ 554 (701)
.++.++ ..+.++.|++.|...... .+... ........++++++++.|+.+.. .+.|.
T Consensus 236 ~dG~~~-~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~ 314 (386)
T 3sjl_D 236 KAGRLV-WPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVV 314 (386)
T ss_dssp TTTEEE-EEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEE
T ss_pred CCCcEE-EEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEE
Confidence 355444 466689999999864321 11100 01123335777999998887643 24688
Q ss_pred EEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCcc-ccccCCCC
Q 005352 555 MWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQE-YVFESFPK 633 (701)
Q Consensus 555 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~-~~~~s~d~ 633 (701)
+.|+.+.+... .+.. ...+..+.++|++ ... |++...++
T Consensus 315 viD~~t~kv~~--------~i~v-----------------------------g~~~~~lavs~D~---~~~ly~tn~~~~ 354 (386)
T 3sjl_D 315 VLDAKTGERLA--------KFEM-----------------------------GHEIDSINVSQDE---KPLLYALSTGDK 354 (386)
T ss_dssp EEETTTCCEEE--------EEEE-----------------------------EEEECEEEECSSS---SCEEEEEETTTT
T ss_pred EEECCCCeEEE--------EEEC-----------------------------CCCcceEEECCCC---CeEEEEEcCCCC
Confidence 88888876211 1100 0123456778872 223 44456688
Q ss_pred cccCCCCccCCCCccc
Q 005352 634 GCATWPEEKLPALSQL 649 (701)
Q Consensus 634 ~~~~W~~~~~~~~~~~ 649 (701)
.+.+++...+..+.++
T Consensus 355 ~VsViD~~t~k~~~~i 370 (386)
T 3sjl_D 355 TLYIHDAESGEELRSV 370 (386)
T ss_dssp EEEEEETTTCCEEEEE
T ss_pred eEEEEECCCCcEEEEe
Confidence 8999998888876665
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.11 E-value=1.4e-08 Score=103.93 Aligned_cols=199 Identities=8% Similarity=0.034 Sum_probs=133.3
Q ss_pred EcCCccCeEEEEEecCC-eEEE-------EECCCcEEEEECCCCeeeeeec-----CCCCeEEEEEeeCC-CCEEEEEEc
Q 005352 350 FHGHSGEILDLSWSKNN-YLLS-------ASIDKTVRLWRVGNDHCLRVFP-----HSNYVTCVHFNPVD-DNYFISGSI 415 (701)
Q Consensus 350 ~~~h~~~I~~l~~s~~~-~l~s-------~s~dg~I~iWd~~~~~~~~~~~-----h~~~V~~l~f~p~~-~~~l~sgs~ 415 (701)
+...-....+++|.+++ .+++ ...++.|.+||..+++...... +...+.++++++ + ++++++ ..
T Consensus 13 ~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~-~~g~l~v~-~~ 90 (314)
T 1pjx_A 13 VTEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDR-DANQLFVA-DM 90 (314)
T ss_dssp EECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECS-SSSEEEEE-ET
T ss_pred hhccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEec-CCCcEEEE-EC
Confidence 34444567899999888 5555 4778999999988877654332 346789999998 7 554544 44
Q ss_pred CCcEEEEeCCCCcEEEE-ecC-----CCcEEEEEEeeCCCeEEEEecC---------------CcEEEEECCCCeeeeee
Q 005352 416 DGKVRIWAVLSCHVVDW-VDI-----RQIVTAVCYRPDGQGGIVGSMM---------------GDCRFYNVSDNHLELDA 474 (701)
Q Consensus 416 dg~v~iwd~~~~~~~~~-~~~-----~~~i~~i~~sp~g~~l~~gs~d---------------g~v~i~d~~~~~~~~~~ 474 (701)
.+.|.+||.. ++.... ... ...+..++++++|+.+++...+ +.|..|+.. ++....
T Consensus 91 ~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~- 167 (314)
T 1pjx_A 91 RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQV- 167 (314)
T ss_dssp TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEE-
T ss_pred CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEe-
Confidence 5579999998 766544 321 1347899999999877776654 567777765 332211
Q ss_pred eEEeecccCCCCCCeeEEEEe----cCCCCEEEE-EECCCcEEEEeCC-ccc----eeeec-ccCC-CCeEEEEEecCCC
Q 005352 475 EICVHSKKKAPCKRITGFQFL----PQDSSKVMV-SCADSQVRILQGP-NVI----GKYKG-LRRS-GNQLSACFTSDGK 542 (701)
Q Consensus 475 ~~~~~~~~~~~~~~i~~l~~~----p~~~~~l~~-~s~dg~I~iwd~~-~~~----~~~~~-~~~~-~~v~~l~~s~dg~ 542 (701)
. . .......++++ | +++.+++ ...++.|.+||.. ... ..+.. ..+. ..+..++++++|+
T Consensus 168 -~--~-----~~~~~~~i~~~~~~d~-dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~ 238 (314)
T 1pjx_A 168 -D--T-----AFQFPNGIAVRHMNDG-RPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN 238 (314)
T ss_dssp -E--E-----EESSEEEEEEEECTTS-CEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC
T ss_pred -c--c-----CCCCcceEEEecccCC-CCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCC
Confidence 0 0 11345788999 8 5545544 4568999999865 211 11111 1122 5678899999999
Q ss_pred EEEEEeCCCcEEEEeCCCCC
Q 005352 543 HIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 543 ~l~sgs~Dg~I~iWd~~~~~ 562 (701)
++++...++.|.+|+.++++
T Consensus 239 l~v~~~~~~~i~~~d~~~g~ 258 (314)
T 1pjx_A 239 LLVANWGSSHIEVFGPDGGQ 258 (314)
T ss_dssp EEEEEETTTEEEEECTTCBS
T ss_pred EEEEEcCCCEEEEEcCCCCc
Confidence 88888888999999987554
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.09 E-value=8.5e-08 Score=100.99 Aligned_cols=240 Identities=8% Similarity=-0.050 Sum_probs=151.6
Q ss_pred EEEEecCC-eEEEEE----------CCCcEEEEECCCCeeeeeecCC--------CCeEEEEEeeCCCCEEEEEEc--CC
Q 005352 359 DLSWSKNN-YLLSAS----------IDKTVRLWRVGNDHCLRVFPHS--------NYVTCVHFNPVDDNYFISGSI--DG 417 (701)
Q Consensus 359 ~l~~s~~~-~l~s~s----------~dg~I~iWd~~~~~~~~~~~h~--------~~V~~l~f~p~~~~~l~sgs~--dg 417 (701)
.++++|++ +++.+. .++.|.+||..+.+.+..+... .....++|+| ++++|+++.. ++
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~sp-DG~~l~v~n~~~~~ 148 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTP-NNADLLFFQFAAGP 148 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECC-CCCEEEEEecCCCC
Confidence 78999999 666664 3678999999998888776532 3456899999 9999998874 47
Q ss_pred cEEEEeCCCCcEEEE-ecCCCcEEEEEEeeCC-CeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEe
Q 005352 418 KVRIWAVLSCHVVDW-VDIRQIVTAVCYRPDG-QGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFL 495 (701)
Q Consensus 418 ~v~iwd~~~~~~~~~-~~~~~~i~~i~~sp~g-~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~ 495 (701)
.|.++| .+++++.. +..... +.+.|++ +.+++.+.||.+.+++. +++....... ...............+.
T Consensus 149 ~v~viD-~t~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~--~~~~~~~~p~~~~~~~~ 221 (373)
T 2mad_H 149 AVGLVV-QGGSSDDQLLSSPTC---YHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLV--GAMLTAAQNLLTQPAQA 221 (373)
T ss_pred eEEEEE-CCCCEEeEEcCCCce---EEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEec--cccccCCcceeecceeE
Confidence 899999 99988876 655443 4455655 45566778999999999 6654421110 00001111112234566
Q ss_pred cCCCCEEEEEECCCcEEEEeCCccce----eeeccc--------CCCCeEEEEEecCCCEEEEEeC----------CCcE
Q 005352 496 PQDSSKVMVSCADSQVRILQGPNVIG----KYKGLR--------RSGNQLSACFTSDGKHIVSAGE----------DSNV 553 (701)
Q Consensus 496 p~~~~~l~~~s~dg~I~iwd~~~~~~----~~~~~~--------~~~~v~~l~~s~dg~~l~sgs~----------Dg~I 553 (701)
++++.++++ +..+.+.+.|...... .+.... .......+.++|+++.|+.+.. .+.|
T Consensus 222 ~~~~~~~~~-~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V 300 (373)
T 2mad_H 222 NKSGRIVWP-VYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEV 300 (373)
T ss_pred ecCCEEEEE-cCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeE
Confidence 644444444 4778999999853221 111100 1122344778898888777653 3568
Q ss_pred EEEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCc-cccccC-C
Q 005352 554 YMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQ-EYVFES-F 631 (701)
Q Consensus 554 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~-~~~~~s-~ 631 (701)
.++|..+.+... .+ + -...+..+.++|+ +. .++++. .
T Consensus 301 ~VID~~t~~vv~--------~i-----------~------------------~g~~p~~i~~s~D----g~~~l~v~~~~ 339 (373)
T 2mad_H 301 TSVTGLVGQTSS--------QI-----------S------------------LGHDVDAISVAQD----GGPDLYALSAG 339 (373)
T ss_pred EEEECCCCEEEE--------EE-----------E------------------CCCCcCeEEECCC----CCeEEEEEcCC
Confidence 888887765210 00 0 0113455778887 44 555555 5
Q ss_pred CCcccCCCCccCCCCcc
Q 005352 632 PKGCATWPEEKLPALSQ 648 (701)
Q Consensus 632 d~~~~~W~~~~~~~~~~ 648 (701)
++.+.+++...+..+..
T Consensus 340 ~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 340 TEVLHIYDAGAGDQDQS 356 (373)
T ss_pred CCeEEEEECCCCCEEee
Confidence 88999999988887666
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.03 E-value=1.4e-08 Score=105.79 Aligned_cols=201 Identities=12% Similarity=0.047 Sum_probs=130.9
Q ss_pred CCccCeEEEEEecCCeEEEEEC------CCcEEEEECCCCeeeeeecC-------CCCeEEEEEeeCCCCEEEEEE---c
Q 005352 352 GHSGEILDLSWSKNNYLLSASI------DKTVRLWRVGNDHCLRVFPH-------SNYVTCVHFNPVDDNYFISGS---I 415 (701)
Q Consensus 352 ~h~~~I~~l~~s~~~~l~s~s~------dg~I~iWd~~~~~~~~~~~h-------~~~V~~l~f~p~~~~~l~sgs---~ 415 (701)
+|...+..+++.+++.|+.+.. ++.|.+||+.+++.+..+.. ...+..++++|.++..+++-. .
T Consensus 64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~ 143 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD 143 (343)
T ss_dssp CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC
Confidence 3567899999999995544442 57899999999987776642 245789999982344445554 5
Q ss_pred CCcEEEEeCCCCcEEEEecC------------------------------CCcEEEEEEeeCCCeEEEEecCC-cEEEEE
Q 005352 416 DGKVRIWAVLSCHVVDWVDI------------------------------RQIVTAVCYRPDGQGGIVGSMMG-DCRFYN 464 (701)
Q Consensus 416 dg~v~iwd~~~~~~~~~~~~------------------------------~~~i~~i~~sp~g~~l~~gs~dg-~v~i~d 464 (701)
++.|.+||+.+++....... ...+..|+|+|+|+.|+++...+ .+..++
T Consensus 144 ~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~ 223 (343)
T 2qe8_A 144 KAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIK 223 (343)
T ss_dssp GCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEE
T ss_pred CCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEE
Confidence 78999999988776554321 02368899999999998887766 444444
Q ss_pred CC---CCeee---eeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeC-CccceeeecccCCCCeEEEEE
Q 005352 465 VS---DNHLE---LDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQG-PNVIGKYKGLRRSGNQLSACF 537 (701)
Q Consensus 465 ~~---~~~~~---~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~-~~~~~~~~~~~~~~~v~~l~~ 537 (701)
.. ..... ....+... .......++++.+ ++.++++...++.|.+||. ...............+.+++|
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~----g~~g~pdgia~d~-~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~ 298 (343)
T 2qe8_A 224 SADLSNLQLTDAELGSKIERY----SEKPICDGISIDK-DHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNF 298 (343)
T ss_dssp HHHHTCTTCCHHHHHTTCEEE----EECCSCSCEEECT-TCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEE
T ss_pred HHHhcCCCCChhhhhcceEec----ccCCCCceEEECC-CCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEE
Confidence 21 11000 00000000 0112456789998 6788888888999999998 322222222123456899999
Q ss_pred ecCCCEEEEEeCCCcEEEEe
Q 005352 538 TSDGKHIVSAGEDSNVYMWN 557 (701)
Q Consensus 538 s~dg~~l~sgs~Dg~I~iWd 557 (701)
.++|.++++.+..+.+.+|+
T Consensus 299 ~~~g~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 299 GSDGYLYFDCNQLHHSAPLN 318 (343)
T ss_dssp CTTSCEEEEECCGGGSGGGB
T ss_pred CCCCcEEEEeCccccccccc
Confidence 99999888887665554444
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.2e-07 Score=99.62 Aligned_cols=189 Identities=12% Similarity=0.116 Sum_probs=128.5
Q ss_pred EEEEEecCCeEEEEECC------CcEEEEECCCCeeeeeecCC----CCeEEEEEeeCCCCEEEEEE-------------
Q 005352 358 LDLSWSKNNYLLSASID------KTVRLWRVGNDHCLRVFPHS----NYVTCVHFNPVDDNYFISGS------------- 414 (701)
Q Consensus 358 ~~l~~s~~~~l~s~s~d------g~I~iWd~~~~~~~~~~~h~----~~V~~l~f~p~~~~~l~sgs------------- 414 (701)
..+...|++.++++..+ +.|.+.|..+++.+..+... ..-..+-|+| +.+.+++..
T Consensus 141 h~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~~ 219 (462)
T 2ece_A 141 HTVHCGPDAIYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLKL 219 (462)
T ss_dssp EEEEECSSCEEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCCCT
T ss_pred cceeECCCeEEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECC-CCCEEEEccCcCccccccccch
Confidence 45566788855555444 78999999999999988622 3345688899 888888874
Q ss_pred ------cCCcEEEEeCCCCcEEEEecCC---CcEEEEEE--eeCCCeEEEEec------CCcEEEEECCCCeeeeeeeEE
Q 005352 415 ------IDGKVRIWAVLSCHVVDWVDIR---QIVTAVCY--RPDGQGGIVGSM------MGDCRFYNVSDNHLELDAEIC 477 (701)
Q Consensus 415 ------~dg~v~iwd~~~~~~~~~~~~~---~~i~~i~~--sp~g~~l~~gs~------dg~v~i~d~~~~~~~~~~~~~ 477 (701)
.+..|.+||+.+++.+..+... .....+.| +|+++++++++. +++|.+|....+.......+.
T Consensus 220 ~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vId 299 (462)
T 2ece_A 220 EHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIE 299 (462)
T ss_dssp TTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEE
T ss_pred hhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEe
Confidence 3688999999998877766654 34555656 999999888874 568888777666554433332
Q ss_pred eecccCC------------CCCCeeEEEEecCCCCEEEEEEC-CCcEEEEeCCcc---c--eeeeccc------------
Q 005352 478 VHSKKKA------------PCKRITGFQFLPQDSSKVMVSCA-DSQVRILQGPNV---I--GKYKGLR------------ 527 (701)
Q Consensus 478 ~~~~~~~------------~~~~i~~l~~~p~~~~~l~~~s~-dg~I~iwd~~~~---~--~~~~~~~------------ 527 (701)
+...... .......|.+++ ++++|.++.. .+.|.+||+... . ......+
T Consensus 300 i~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~-DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~ 378 (462)
T 2ece_A 300 IPAEPLEGNLPEILKPFKAVPPLVTDIDISL-DDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHK 378 (462)
T ss_dssp ECCEECCSSCCGGGGGGTEECCCCCCEEECT-TSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCC
T ss_pred CCCccccccccccccccccCCCceeEEEECC-CCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeecccccccccc
Confidence 2221100 024578899999 5666666655 889999998522 1 1111110
Q ss_pred CCCCeEEEEEecCCCEEEEEe
Q 005352 528 RSGNQLSACFTSDGKHIVSAG 548 (701)
Q Consensus 528 ~~~~v~~l~~s~dg~~l~sgs 548 (701)
..+....+.++|||++|+++.
T Consensus 379 ~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 379 LTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CCSCCCCEEECTTSSEEEEEC
T ss_pred CCCCCCEEEEcCCCCEEEEEc
Confidence 011357899999999999988
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=98.98 E-value=5.6e-08 Score=103.82 Aligned_cols=204 Identities=14% Similarity=0.061 Sum_probs=142.4
Q ss_pred cCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCC--cEEEEeCCCCcEEE
Q 005352 355 GEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDG--KVRIWAVLSCHVVD 431 (701)
Q Consensus 355 ~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg--~v~iwd~~~~~~~~ 431 (701)
.....|+|++++ ++++...++.|++||..++............. ++|+| +++.|+++..++ .|.+|+...+....
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~-~g~~l~~~d~~~~~~I~~~d~~~~~~~~ 208 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTK-DKQRVYSIGWEGTHTVYVYMKASGWAPT 208 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECT-TSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEec-CCCcEEEEecCCCceEEEEEcCCCceeE
Confidence 467899999999 55555667899999999887776655444444 99999 888888888766 78889887665433
Q ss_pred Ee----c-CCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEE
Q 005352 432 WV----D-IRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSC 506 (701)
Q Consensus 432 ~~----~-~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s 506 (701)
.. . ....+..++++|++..|+++..++.|+.||..+............. .....+...++|+|+++.++++-.
T Consensus 209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g--~~~~~P~~~ia~~p~~g~lyv~d~ 286 (409)
T 3hrp_A 209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSG--SLGTNPGPYLIYYFVDSNFYMSDQ 286 (409)
T ss_dssp EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCS--CCCCSSCCEEEEETTTTEEEEEET
T ss_pred EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccC--CCCCCccccEEEeCCCCEEEEEeC
Confidence 33 2 4456788999996666666777889999999876533211100100 001111238999996677777777
Q ss_pred CCCcEEEEeCCccceeeeccc-------------CCCCeEEEEEecCCCEEEEEe-CCCcEEEEeCCCCC
Q 005352 507 ADSQVRILQGPNVIGKYKGLR-------------RSGNQLSACFTSDGKHIVSAG-EDSNVYMWNCIGHE 562 (701)
Q Consensus 507 ~dg~I~iwd~~~~~~~~~~~~-------------~~~~v~~l~~s~dg~~l~sgs-~Dg~I~iWd~~~~~ 562 (701)
.++.|+.|+.......+.+.. .-.....++++++|+++++-. .++.|+.|++.++.
T Consensus 287 ~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~ 356 (409)
T 3hrp_A 287 NLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGY 356 (409)
T ss_dssp TTTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTE
T ss_pred CCCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCE
Confidence 789999999765433333221 124578999999999888877 88999999976654
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=98.98 E-value=3.6e-08 Score=114.14 Aligned_cols=194 Identities=10% Similarity=0.023 Sum_probs=125.6
Q ss_pred CccCeEEEEEecCC-eEEEEECC-----CcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCc--------
Q 005352 353 HSGEILDLSWSKNN-YLLSASID-----KTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGK-------- 418 (701)
Q Consensus 353 h~~~I~~l~~s~~~-~l~s~s~d-----g~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~-------- 418 (701)
|...+..++|||+| +|+.++.+ ..|++||+.+++.+....+...+..++|+| + +.|+.+..++.
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wsp-D-~~l~~~~~~~~~~~~~~~~ 238 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLG-N-DALLYSRFAEPKEGQAFQA 238 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEEST-T-SEEEEEECCCC--------
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEEC-C-CEEEEEEecCccccccccc
Confidence 44467889999999 66655543 359999999998765432222345789999 8 88888876654
Q ss_pred ------EEEEeCCCCcE--EEEec---CCCcEEEEEEeeCCCeEEEEecCC-----cEEEEECCCCeee-eeeeEEeecc
Q 005352 419 ------VRIWAVLSCHV--VDWVD---IRQIVTAVCYRPDGQGGIVGSMMG-----DCRFYNVSDNHLE-LDAEICVHSK 481 (701)
Q Consensus 419 ------v~iwd~~~~~~--~~~~~---~~~~i~~i~~sp~g~~l~~gs~dg-----~v~i~d~~~~~~~-~~~~~~~~~~ 481 (701)
|++|++.+++. ..... +...+..+.|+|||++|+..+.++ .|++||+.++... .. .+..
T Consensus 239 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~---~l~~- 314 (741)
T 1yr2_A 239 LNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVT---ALIP- 314 (741)
T ss_dssp CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCE---EEEC-
T ss_pred CCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccE---EecC-
Confidence 89999987652 12222 223588999999999998887654 7999999776211 11 1111
Q ss_pred cCCCCCCeeEEEEecCCCCEEEEEEC----CCcEEEEeCCccc---eeeecccCCCCeEEEEEecCCCEEEEEeCCCcEE
Q 005352 482 KKAPCKRITGFQFLPQDSSKVMVSCA----DSQVRILQGPNVI---GKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVY 554 (701)
Q Consensus 482 ~~~~~~~i~~l~~~p~~~~~l~~~s~----dg~I~iwd~~~~~---~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~ 554 (701)
+...+... +.| ++..|+..+. ++.|.+||+.... ..+. ..+...+..++|+ ++.++++...|+..+
T Consensus 315 ---~~~~~~~~-~~~-dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~-~~~~~~l~~~~~~-~~~lv~~~~~dg~~~ 387 (741)
T 1yr2_A 315 ---DLKAQWDF-VDG-VGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVV-PESKDNLESVGIA-GNRLFASYIHDAKSQ 387 (741)
T ss_dssp ---SSSSCEEE-EEE-ETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEE-CCCSSEEEEEEEE-BTEEEEEEEETTEEE
T ss_pred ---CCCceEEE-Eec-cCCEEEEEECCCCCCCEEEEEeCCCCccccEEEe-cCCCCeEEEEEEE-CCEEEEEEEECCEEE
Confidence 11223333 346 5666666665 3459999987531 2222 2233456677887 667788888999877
Q ss_pred EEeCC
Q 005352 555 MWNCI 559 (701)
Q Consensus 555 iWd~~ 559 (701)
||.++
T Consensus 388 l~~~~ 392 (741)
T 1yr2_A 388 VLAFD 392 (741)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 77654
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=98.94 E-value=3.1e-07 Score=93.46 Aligned_cols=196 Identities=12% Similarity=0.073 Sum_probs=132.2
Q ss_pred CccCeEEEEEecCC--eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEE
Q 005352 353 HSGEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV 430 (701)
Q Consensus 353 h~~~I~~l~~s~~~--~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~ 430 (701)
+..-..+..|++++ .+++...++.|..||..+++. ..+.....+.+++++| +++++++ . ++.|.+||..+++..
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~-dG~l~v~-~-~~~l~~~d~~~g~~~ 86 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVTMDAPVSSVALRQ-SGGYVAT-I-GTKFCALNWKEQSAV 86 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEECSSCEEEEEEBT-TSSEEEE-E-TTEEEEEETTTTEEE
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEeCCCceEEEEECC-CCCEEEE-E-CCeEEEEECCCCcEE
Confidence 34455688999954 566666789999999988765 4555678899999999 8885554 4 568999999888765
Q ss_pred EEecC-----CCcEEEEEEeeCCCeEEEEecC---------CcEEEEECCCC-eeeeeeeEEeecccCCCCCCeeEEEEe
Q 005352 431 DWVDI-----RQIVTAVCYRPDGQGGIVGSMM---------GDCRFYNVSDN-HLELDAEICVHSKKKAPCKRITGFQFL 495 (701)
Q Consensus 431 ~~~~~-----~~~i~~i~~sp~g~~l~~gs~d---------g~v~i~d~~~~-~~~~~~~~~~~~~~~~~~~~i~~l~~~ 495 (701)
.+... ...+..++++|+|+.+++.... ..-.+|.+... +... + .. .......++|+
T Consensus 87 ~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~---~-~~-----~~~~pngi~~s 157 (297)
T 3g4e_A 87 VLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK---Y-FD-----QVDISNGLDWS 157 (297)
T ss_dssp EEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE---E-EE-----EESBEEEEEEC
T ss_pred EEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEE---E-ee-----ccccccceEEc
Confidence 44332 2347889999999866554321 23345554432 2211 0 00 11345789999
Q ss_pred cCCCC-EEEEEECCCcEEEEeCC--ccc----eee-ecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 496 PQDSS-KVMVSCADSQVRILQGP--NVI----GKY-KGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 496 p~~~~-~l~~~s~dg~I~iwd~~--~~~----~~~-~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
| +++ ++++.+.++.|.+|+.. +.. ..+ ........+..++++++|++.++....+.|..|+.++++
T Consensus 158 p-dg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~ 231 (297)
T 3g4e_A 158 L-DHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGK 231 (297)
T ss_dssp T-TSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCC
T ss_pred C-CCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCce
Confidence 9 455 45566668899999863 221 112 111233567899999999988888888899999988765
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.92 E-value=9.1e-07 Score=93.19 Aligned_cols=188 Identities=11% Similarity=0.016 Sum_probs=121.1
Q ss_pred cCCeEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcEE---
Q 005352 364 KNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVT--- 440 (701)
Q Consensus 364 ~~~~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~--- 440 (701)
.++.++.++.++.|..+|..+++.+..+.....+.+.... .+..++.++.++.|..+|..+++.+-.......+.
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~ 179 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLR 179 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----C
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeec
Confidence 3558888899999999999999988777643333221111 24577888889999999999998775544433321
Q ss_pred ---EEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccC--CCCCCe-eEEEEecCCCCEEEEEECCCcEEEE
Q 005352 441 ---AVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKK--APCKRI-TGFQFLPQDSSKVMVSCADSQVRIL 514 (701)
Q Consensus 441 ---~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~--~~~~~i-~~l~~~p~~~~~l~~~s~dg~I~iw 514 (701)
.... .+..+++++.++.+..+|..+++.............. .....+ ..... .+..+++++.++.+..+
T Consensus 180 ~~~~~~~--~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~v~~~~~~g~l~~~ 254 (376)
T 3q7m_A 180 GESAPTT--AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV---VNGVVFALAYNGNLTAL 254 (376)
T ss_dssp CCCCCEE--ETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE---ETTEEEEECTTSCEEEE
T ss_pred CCCCcEE--ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE---ECCEEEEEecCcEEEEE
Confidence 1222 2457888888999999999988776543321110000 000000 00011 24678888889999999
Q ss_pred eCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 515 QGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 515 d~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
|..+........ ......+.. ++..|+.++.++.|+.+|..+++
T Consensus 255 d~~tG~~~w~~~--~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~ 298 (376)
T 3q7m_A 255 DLRSGQIMWKRE--LGSVNDFIV--DGNRIYLVDQNDRVMALTIDGGV 298 (376)
T ss_dssp ETTTCCEEEEEC--CCCEEEEEE--ETTEEEEEETTCCEEEEETTTCC
T ss_pred ECCCCcEEeecc--CCCCCCceE--ECCEEEEEcCCCeEEEEECCCCc
Confidence 988766555432 233444444 46688888899999999998886
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=98.86 E-value=4.3e-08 Score=104.08 Aligned_cols=266 Identities=8% Similarity=0.079 Sum_probs=167.5
Q ss_pred CcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEE----------cCCcEEEEeCCCCcEEEEecCC--------
Q 005352 375 KTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGS----------IDGKVRIWAVLSCHVVDWVDIR-------- 436 (701)
Q Consensus 375 g~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs----------~dg~v~iwd~~~~~~~~~~~~~-------- 436 (701)
+.|.++|..+++.+..+.-.... .++++| ++++++++. .++.|.++|..+.+.+..+...
T Consensus 99 ~~VsVID~~t~~vv~~I~vG~~P-gia~Sp-Dgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g 176 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDGGFLP-HPVAAE-DGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVG 176 (426)
T ss_dssp EEEEEEETTTTEEEEEEEECSSC-EEEECT-TSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBS
T ss_pred CeEEEEECCCCEEEEEEECCCCC-ceEECC-CCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccC
Confidence 69999999999999999844444 899999 888777765 3678999999999888655432
Q ss_pred CcEEEEEEeeCCCeEEEEec--CCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEE
Q 005352 437 QIVTAVCYRPDGQGGIVGSM--MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRIL 514 (701)
Q Consensus 437 ~~i~~i~~sp~g~~l~~gs~--dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iw 514 (701)
.....+.++|||++++++.. ++.|.++|+.+.+....... .. +....|.....+++.+.||.+.+.
T Consensus 177 ~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v--~g----------~~~~~p~g~~~~v~~~~dG~~~~V 244 (426)
T 3c75_H 177 TYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDV--PD----------CYHIFPASPTVFYMNCRDGSLARV 244 (426)
T ss_dssp CCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC--CS----------EEEEEEEETTEEEEEETTSSEEEE
T ss_pred CCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEc--CC----------ceeeccCCCcEEEEEcCCCCEEEE
Confidence 34567899999999999874 57899999999886543221 10 123334344566667777777777
Q ss_pred eCCccceeee----cccCCCC-eEEEEEecCCCEEEEEeCCCcEEEEeCCCCCCCCccccccccccccccCCceEEecCC
Q 005352 515 QGPNVIGKYK----GLRRSGN-QLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWC 589 (701)
Q Consensus 515 d~~~~~~~~~----~~~~~~~-v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 589 (701)
+......... ......+ ...+.|.+++..++..+..+.|++.|+.+...... ........ ..+...|.
T Consensus 245 ~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~------~~~~~~~~-~~i~~g~~ 317 (426)
T 3c75_H 245 DFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFR------APIEALTE-AERADDWR 317 (426)
T ss_dssp ECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEEC------CCEESSCT-TTGGGTEE
T ss_pred ECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEe------eeeeeccc-cccccccc
Confidence 7632211100 0001111 12356789998887778889999999876541100 00000000 00000000
Q ss_pred CCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccC---------CCCcccCCCCccCCCCccccccccchhhhh
Q 005352 590 GLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFES---------FPKGCATWPEEKLPALSQLSSASALHKSQY 660 (701)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s---------~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~ 660 (701)
-.....+.++|++ ...|++.. ..+.+.+.|...+..+.+++..
T Consensus 318 -----------------p~g~~~va~s~dg---~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg-------- 369 (426)
T 3c75_H 318 -----------------PGGWQQTAYHRQS---DRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG-------- 369 (426)
T ss_dssp -----------------ECSSSCEEEEGGG---TEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE--------
T ss_pred -----------------cCCceeeEEcCCC---CEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC--------
Confidence 0011123456651 22333321 1346778888888888777554
Q ss_pred hhhhcccccccccCCCcc-EEEEecC-CCeEeEEee
Q 005352 661 KFLKSSCLCTTSSHAWGL-VIVTAGW-DGRIRSFLN 694 (701)
Q Consensus 661 ~~~~~~~~~~~~~~~~g~-~ivTgg~-DG~Irvw~~ 694 (701)
...+.+.++++ |+ .++++.+ ++.|-|++.
T Consensus 370 ----~~P~gia~spD-g~~~lyv~n~~s~~VsVID~ 400 (426)
T 3c75_H 370 ----HEIDSINVSQD-AEPLLYALSAGTQTLHIYDA 400 (426)
T ss_dssp ----EEECEEEECCS-SSCEEEEEETTTTEEEEEET
T ss_pred ----CCcCeEEEccC-CCEEEEEEcCCCCeEEEEEC
Confidence 24677889999 87 8888875 899999974
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.81 E-value=3.1e-08 Score=103.41 Aligned_cols=262 Identities=10% Similarity=-0.007 Sum_probs=157.2
Q ss_pred eEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEe----------CCCcEEEEEeecCeeeeeecCCCC
Q 005352 224 RVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAG----------DDGVVRLWQVVEDERLTEVDIPEI 293 (701)
Q Consensus 224 ~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs----------~Dg~I~iWd~~~~~~~~~~~~~~~ 293 (701)
.|.|.|...... + ..+.....+ .+.|+|||++|+.+. .++.|.+||..+++.+.++..+..
T Consensus 47 ~vsvID~~t~~v-~------~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~ 117 (368)
T 1mda_H 47 ENWVSCAGCGVT-L------GHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDA 117 (368)
T ss_dssp EEEEEETTTTEE-E------EEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTS
T ss_pred eEEEEECCCCeE-E------EEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCc
Confidence 777877543221 1 223333445 799999999988886 378999999999887665543210
Q ss_pred CCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEE
Q 005352 294 DPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSAS 372 (701)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s 372 (701)
. + ...+ .....++++|+| +++.+.
T Consensus 118 ~--------------------------------------------------~---~~~g--~~P~~ia~SpDGk~lyVan 142 (368)
T 1mda_H 118 P--------------------------------------------------R---FSVG--PRVHIIGNCASSACLLFFL 142 (368)
T ss_dssp C--------------------------------------------------S---CCBS--CCTTSEEECTTSSCEEEEE
T ss_pred c--------------------------------------------------c---cccC--CCcceEEEcCCCCEEEEEc
Confidence 0 0 0000 123467899999 777776
Q ss_pred C--CCcEEE--EECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCC-----CcEEE----Eec-CCCc
Q 005352 373 I--DKTVRL--WRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS-----CHVVD----WVD-IRQI 438 (701)
Q Consensus 373 ~--dg~I~i--Wd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~-----~~~~~----~~~-~~~~ 438 (701)
. ...|.+ +|+.+ +..+...+. +.+.|.....+++.+.||.+.+.|+.+ ++... ... ...+
T Consensus 143 ~~~~~~v~V~~iD~~t---v~~i~v~~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P 216 (368)
T 1mda_H 143 FGSSAAAGLSVPGASD---DQLTKSASC---FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQA 216 (368)
T ss_dssp CSSSCEEEEEETTTEE---EEEEECSSC---CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCC
T ss_pred cCCCCeEEEEEEchhh---ceEEECCCc---eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCc
Confidence 4 467888 99877 445543222 223443455667777899998899887 43321 011 1223
Q ss_pred EEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecc----cCCCCCCeeEEEEecCCCCEEEEEEC-------
Q 005352 439 VTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSK----KKAPCKRITGFQFLPQDSSKVMVSCA------- 507 (701)
Q Consensus 439 i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~----~~~~~~~i~~l~~~p~~~~~l~~~s~------- 507 (701)
. . .+++..++..+. +.+.+.|+..........+.+... ..........+.++| +++.++++..
T Consensus 217 ~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~-dg~~lyV~~~~~~~~~~ 290 (368)
T 1mda_H 217 A---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLK-NTDGIMILTVEHSRSCL 290 (368)
T ss_dssp E---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEET-TTTEEEEEEEECSSCTT
T ss_pred c---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcC-CCCEEEEEeccccCccc
Confidence 3 3 666777666666 999999997543222111111000 000001112267999 5555555432
Q ss_pred --CCcEEEEeCCccceeeecccCCCCeEEEEEecCCC-EEEEEe-CCCcEEEEeCCCCC
Q 005352 508 --DSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGK-HIVSAG-EDSNVYMWNCIGHE 562 (701)
Q Consensus 508 --dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~-~l~sgs-~Dg~I~iWd~~~~~ 562 (701)
++.+.++|..+........ -......++|+|||+ ++++.. .++.|.++|+.+.+
T Consensus 291 ~~~~~~~ViD~~t~~vv~~i~-vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~k 348 (368)
T 1mda_H 291 AAAENTSSVTASVGQTSGPIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQ 348 (368)
T ss_dssp SCEEEEEEEESSSCCEEECCE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCE
T ss_pred ccCCCEEEEECCCCeEEEEEE-CCCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCc
Confidence 2456699998665443332 122578899999997 556666 59999999999876
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.80 E-value=3.9e-06 Score=86.52 Aligned_cols=188 Identities=7% Similarity=-0.025 Sum_probs=127.0
Q ss_pred CeEEEEEecCC--eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEe
Q 005352 356 EILDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV 433 (701)
Q Consensus 356 ~I~~l~~s~~~--~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~ 433 (701)
......|++++ .+++...++.|..||..+++.. .+.....+.+++|.| +++++++. . ..|.+||..+++...+.
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~~~~v~~i~~~~-dg~l~v~~-~-~gl~~~d~~~g~~~~~~ 125 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHALPFMGSALAKIS-DSKQLIAS-D-DGLFLRDTATGVLTLHA 125 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEECSSCEEEEEEEE-TTEEEEEE-T-TEEEEEETTTCCEEEEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEECCCcceEEEEeC-CCeEEEEE-C-CCEEEEECCCCcEEEEe
Confidence 45678999974 6666667899999999887643 345567899999999 88776654 3 45999999888765444
Q ss_pred cC-----CCcEEEEEEeeCCCeEEEEec------CCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEE
Q 005352 434 DI-----RQIVTAVCYRPDGQGGIVGSM------MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKV 502 (701)
Q Consensus 434 ~~-----~~~i~~i~~sp~g~~l~~gs~------dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l 502 (701)
.. ...+..++++|+|+.+++... .+.|..++ +++.... . . ......+++|+| +++.+
T Consensus 126 ~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~---~-~-----~~~~~~~i~~s~-dg~~l 193 (326)
T 2ghs_A 126 ELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKL---F-A-----DISIPNSICFSP-DGTTG 193 (326)
T ss_dssp CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEE---E-E-----EESSEEEEEECT-TSCEE
T ss_pred eCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEe---e-C-----CCcccCCeEEcC-CCCEE
Confidence 32 135889999999986655432 24555555 3433211 0 0 112467899999 56555
Q ss_pred -EEEECCCcEEEEeCC--cc-c----eeeec-ccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 005352 503 -MVSCADSQVRILQGP--NV-I----GKYKG-LRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCI 559 (701)
Q Consensus 503 -~~~s~dg~I~iwd~~--~~-~----~~~~~-~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~ 559 (701)
++.+.++.|.+|+.. +. . ..+.. ......+..++++++|.++++...++.|.+|+..
T Consensus 194 yv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~ 259 (326)
T 2ghs_A 194 YFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD 259 (326)
T ss_dssp EEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT
T ss_pred EEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC
Confidence 444567899999974 32 1 12211 1133456789999999988877777899999873
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.71 E-value=3.4e-06 Score=88.72 Aligned_cols=180 Identities=9% Similarity=0.040 Sum_probs=119.5
Q ss_pred CCeEEEEECCCcEEEEECCCCeeeeeecCCCCeE------EEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCc
Q 005352 365 NNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVT------CVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQI 438 (701)
Q Consensus 365 ~~~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~------~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~ 438 (701)
++.++.++.++.|..+|..+++.+..+.....+. .... .+..++.+..++.|..+|..+++.+-......+
T Consensus 143 ~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~---~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~ 219 (376)
T 3q7m_A 143 DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT---AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQA 219 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE---ETTEEEECCTTTEEEEEETTTCCEEEEEECCC-
T ss_pred CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE---ECCEEEEEcCCCEEEEEECCCCcEEEEEecccC
Confidence 4578888899999999999999888876443332 2222 245677788899999999999987744332211
Q ss_pred E-----E---EEEEee--CCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECC
Q 005352 439 V-----T---AVCYRP--DGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD 508 (701)
Q Consensus 439 i-----~---~i~~sp--~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~d 508 (701)
. . .+...| .+..+++++.++.+..+|..+++....... .....+.. .+..+++++.+
T Consensus 220 ~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~----------~~~~~~~~---~~~~l~~~~~~ 286 (376)
T 3q7m_A 220 TGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL----------GSVNDFIV---DGNRIYLVDQN 286 (376)
T ss_dssp ----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECC----------CCEEEEEE---ETTEEEEEETT
T ss_pred CCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccC----------CCCCCceE---ECCEEEEEcCC
Confidence 0 0 011111 356788888899999999998876543221 12333333 35678888899
Q ss_pred CcEEEEeCCccceeeeccc-CCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 509 SQVRILQGPNVIGKYKGLR-RSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 509 g~I~iwd~~~~~~~~~~~~-~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
+.|..+|..+......... ....+..... .+..|+.++.+|.|+++|..+++
T Consensus 287 g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~ 339 (376)
T 3q7m_A 287 DRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGR 339 (376)
T ss_dssp CCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCC
T ss_pred CeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCc
Confidence 9999999887665554321 1122222233 35688899999999999998886
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.68 E-value=2e-06 Score=87.76 Aligned_cols=198 Identities=12% Similarity=0.083 Sum_probs=130.4
Q ss_pred CCeEEEcCCccCeEEEEEecCC--eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEE
Q 005352 345 KPLHEFHGHSGEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIW 422 (701)
Q Consensus 345 ~~~~~~~~h~~~I~~l~~s~~~--~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iw 422 (701)
..+..+..+........|++++ .+++...++.|..|+. +++......+...+..+++++ +++++++...++.|.+|
T Consensus 35 ~~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~~~~~~~~~~~gl~~d~-dG~l~v~~~~~~~v~~~ 112 (305)
T 3dr2_A 35 ARLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVDVLLDATAFTNGNAVDA-QQRLVHCEHGRRAITRS 112 (305)
T ss_dssp CCCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEEEEEESCSCEEEEEECT-TSCEEEEETTTTEEEEE
T ss_pred CceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEEEEeCCCCccceeeECC-CCCEEEEECCCCEEEEE
Confidence 3445555566678899999988 5667777899999998 454333333667789999999 88877666566789999
Q ss_pred eCCCCcEEEEecC-----CCcEEEEEEeeCCCeEEE----Eec-------------CCcEEEEECCCCeeeeeeeEEeec
Q 005352 423 AVLSCHVVDWVDI-----RQIVTAVCYRPDGQGGIV----GSM-------------MGDCRFYNVSDNHLELDAEICVHS 480 (701)
Q Consensus 423 d~~~~~~~~~~~~-----~~~i~~i~~sp~g~~l~~----gs~-------------dg~v~i~d~~~~~~~~~~~~~~~~ 480 (701)
+.. ++...+... ...+..++++|+|+.+++ |.. .+.|..||..+++.....
T Consensus 113 ~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~------ 185 (305)
T 3dr2_A 113 DAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA------ 185 (305)
T ss_dssp CTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE------
T ss_pred CCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe------
Confidence 986 554433221 134667999999987776 332 245777777555543211
Q ss_pred ccCCCCCCeeEEEEecCCCCEEEEEECC------CcEEEEeCCccc----eeeecccCCCCeEEEEEecCCCEEEEEeCC
Q 005352 481 KKKAPCKRITGFQFLPQDSSKVMVSCAD------SQVRILQGPNVI----GKYKGLRRSGNQLSACFTSDGKHIVSAGED 550 (701)
Q Consensus 481 ~~~~~~~~i~~l~~~p~~~~~l~~~s~d------g~I~iwd~~~~~----~~~~~~~~~~~v~~l~~s~dg~~l~sgs~D 550 (701)
.......++|+| ++..|+++... +.|++|++.... ..+... .......++++++|++.++ +.+
T Consensus 186 ----~~~~p~gl~~sp-dg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~-~~~~pdgi~~d~~G~lwv~-~~~ 258 (305)
T 3dr2_A 186 ----DLDHPNGLAFSP-DEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASV-PDGLPDGFCVDRGGWLWSS-SGT 258 (305)
T ss_dssp ----EESSEEEEEECT-TSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECC-SSSCCCSEEECTTSCEEEC-CSS
T ss_pred ----cCCCCcceEEcC-CCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEEC-CCCCCCeEEECCCCCEEEe-cCC
Confidence 113467899999 67766666554 789999875321 111111 2334567889999995554 444
Q ss_pred CcEEEEeCC
Q 005352 551 SNVYMWNCI 559 (701)
Q Consensus 551 g~I~iWd~~ 559 (701)
.|++|+.+
T Consensus 259 -gv~~~~~~ 266 (305)
T 3dr2_A 259 -GVCVFDSD 266 (305)
T ss_dssp -EEEEECTT
T ss_pred -cEEEECCC
Confidence 49999874
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=2.1e-06 Score=98.44 Aligned_cols=231 Identities=7% Similarity=0.036 Sum_probs=138.8
Q ss_pred eeecCcccccc-----ccccceEEEEEccCccchhhhcccCceeccCCCcE--EEEEEccCCCEEEEEeCCCc-------
Q 005352 208 RVRLNEEDAMF-----CSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSI--LTMKFSPDGQYLASAGDDGV------- 273 (701)
Q Consensus 208 ~~~~~~~~~~~-----~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I--~~l~fspdg~~Lasgs~Dg~------- 273 (701)
+++++++.++. |+....|+||++...... ..+...+ ..++|+ ||+.|+.+..+..
T Consensus 135 ~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~----------~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~ 203 (693)
T 3iuj_A 135 SFSRDGRILAYSLSLAGSDWREIHLMDVESKQPL----------ETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSA 203 (693)
T ss_dssp EECTTSSEEEEEEECSSCCEEEEEEEETTTCSEE----------EEEEEEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred EECCCCCEEEEEEecCCCceEEEEEEECCCCCCC----------ccccCCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence 45666666664 344468999988654311 1121222 467899 9999999888743
Q ss_pred ------EEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCe
Q 005352 274 ------VRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPL 347 (701)
Q Consensus 274 ------I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (701)
|.+|++.+..... ..+
T Consensus 204 ~~~~~~v~~~~lgt~~~~~----------------------------------------------------------~~v 225 (693)
T 3iuj_A 204 RTDQHKVYFHRLGTAQEDD----------------------------------------------------------RLV 225 (693)
T ss_dssp -CCCCEEEEEETTSCGGGC----------------------------------------------------------EEE
T ss_pred cCCCcEEEEEECCCCcccc----------------------------------------------------------eEE
Confidence 7777765542100 001
Q ss_pred EEEcC-CccCeEEEEEecCC-eE-EEEEC---CCcEEEEECCCC--eeeeeecCCCCeEEEEEeeCCCCEEE-EEEcC--
Q 005352 348 HEFHG-HSGEILDLSWSKNN-YL-LSASI---DKTVRLWRVGND--HCLRVFPHSNYVTCVHFNPVDDNYFI-SGSID-- 416 (701)
Q Consensus 348 ~~~~~-h~~~I~~l~~s~~~-~l-~s~s~---dg~I~iWd~~~~--~~~~~~~h~~~V~~l~f~p~~~~~l~-sgs~d-- 416 (701)
..... |...+..+.|+|++ +| ++.+. ...|.++|+.++ +......+....... |++ ++..|+ ....+
T Consensus 226 ~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~-~g~~l~~~t~~~~~ 303 (693)
T 3iuj_A 226 FGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDN-KGSTLYLLTNRDAP 303 (693)
T ss_dssp ESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEE-ETTEEEEEECTTCT
T ss_pred EecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-Eec-cCCEEEEEECCCCC
Confidence 11122 34457788999999 44 44443 258999999776 334334455555554 556 455544 44433
Q ss_pred -CcEEEEeCCCCcE---EEEecCCCcEEEEEEeeCCCeEEEEecCC---cEEEEECCCCeeeeeeeEEeecccCCCCCCe
Q 005352 417 -GKVRIWAVLSCHV---VDWVDIRQIVTAVCYRPDGQGGIVGSMMG---DCRFYNVSDNHLELDAEICVHSKKKAPCKRI 489 (701)
Q Consensus 417 -g~v~iwd~~~~~~---~~~~~~~~~i~~i~~sp~g~~l~~gs~dg---~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i 489 (701)
+.|..+|+.++.. ..+..+...+. .|+++++.|+....++ .|++|++....... + .......+
T Consensus 304 ~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~~~---l-----~~p~~~~~ 373 (693)
T 3iuj_A 304 NRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKRVRE---V-----ALPGLGSV 373 (693)
T ss_dssp TCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCEEEE---E-----CCSSSSEE
T ss_pred CCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCeeEE---e-----ecCCCceE
Confidence 5799999987654 44555655554 8999999888776544 68899987554321 1 11122446
Q ss_pred eEEEEecCCCCEEEEEEC---CCcEEEEeCCcc
Q 005352 490 TGFQFLPQDSSKVMVSCA---DSQVRILQGPNV 519 (701)
Q Consensus 490 ~~l~~~p~~~~~l~~~s~---dg~I~iwd~~~~ 519 (701)
..+.+++++..++++.+. -+.|+.||+.+.
T Consensus 374 ~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g 406 (693)
T 3iuj_A 374 SGFNGKHDDPALYFGFENYAQPPTLYRFEPKSG 406 (693)
T ss_dssp EECCCCTTCSCEEEEEECSSSCCEEEEECTTTC
T ss_pred EeeecCCCCCEEEEEecCCCCCCEEEEEECCCC
Confidence 667777744444444433 278999998643
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.62 E-value=2.5e-08 Score=105.12 Aligned_cols=202 Identities=12% Similarity=0.040 Sum_probs=107.7
Q ss_pred CCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccc
Q 005352 261 DGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVF 340 (701)
Q Consensus 261 dg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (701)
++..|++++.||.|..||..+++.+..+..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-------------------------------------------------- 37 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-------------------------------------------------- 37 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--------------------------------------------------
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--------------------------------------------------
Confidence 577899999999999999999875544321
Q ss_pred cccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeecCC--CCeEE-EEEeeCCCCEEEEEEcC
Q 005352 341 RILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHS--NYVTC-VHFNPVDDNYFISGSID 416 (701)
Q Consensus 341 ~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~h~--~~V~~-l~f~p~~~~~l~sgs~d 416 (701)
+.+.+..+..++ .+++++.|+.|+.||..+++.+..+... ..+.+ ..+. .+..+++++.+
T Consensus 38 --------------~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~--~~~~v~~g~~d 101 (369)
T 2hz6_A 38 --------------DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRS--SDGILYMGKKQ 101 (369)
T ss_dssp --------------CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC-------CCCCEEE
T ss_pred --------------CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCceEe--cCCEEEEEeCC
Confidence 111122223445 6777789999999999999877665421 11100 0111 34567788889
Q ss_pred CcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEec
Q 005352 417 GKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLP 496 (701)
Q Consensus 417 g~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p 496 (701)
+.|+.||..+++.+....... ...++|++..+++++.++.|+.||..+++.......... ....+.+
T Consensus 102 g~v~a~D~~tG~~~w~~~~~~---~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~~----------~~~~~~~ 168 (369)
T 2hz6_A 102 DIWYVIDLLTGEKQQTLSSAF---ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFDY----------AASLPED 168 (369)
T ss_dssp EEEEEECCC-------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEEE----------CCBCCCC
T ss_pred CEEEEEECCCCcEEEEecCCC---cccccccCCEEEEEecCCEEEEEECCCCCEEEeEecccc----------cCccccC
Confidence 999999999998774443332 234567888999999999999999998876544332111 1111111
Q ss_pred C--CCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEE-EEEecCCC
Q 005352 497 Q--DSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLS-ACFTSDGK 542 (701)
Q Consensus 497 ~--~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~-l~~s~dg~ 542 (701)
+ ....+++++.++.|+.||..+........ ...++.. ..++++|.
T Consensus 169 ~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~-~~~pv~~~~~~~~dg~ 216 (369)
T 2hz6_A 169 DVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN-YASPVVAFYVWQREGL 216 (369)
T ss_dssp CTTCCCCEEEEETSCEEEEECTTTCCEEEEEE-CSSCEEEEEECTTSSC
T ss_pred CccccceEEEECCCCEEEEEECCCCcEEEEec-CCCceEEEEEecCCce
Confidence 0 11567788999999999998766555433 2334433 33444554
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.61 E-value=1.9e-06 Score=89.63 Aligned_cols=201 Identities=10% Similarity=0.062 Sum_probs=128.8
Q ss_pred ccCCCcEEEEEEccCCCEEEEEeC-----CCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceee
Q 005352 247 QAHDGSILTMKFSPDGQYLASAGD-----DGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISIL 321 (701)
Q Consensus 247 ~~H~~~I~~l~fspdg~~Lasgs~-----Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (701)
.+|-..+..|+|+++|+++++-.. ++.|.+||+.+++.+..+.++...
T Consensus 63 ~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~--------------------------- 115 (343)
T 2qe8_A 63 IITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPI--------------------------- 115 (343)
T ss_dssp CCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTT---------------------------
T ss_pred ccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhh---------------------------
Confidence 356778999999999976665433 578999999888755544322100
Q ss_pred EEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecC-Ce-EEEEE---CCCcEEEEECCCCeeeeeecC---
Q 005352 322 KSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN-NY-LLSAS---IDKTVRLWRVGNDHCLRVFPH--- 393 (701)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~-~~-l~s~s---~dg~I~iWd~~~~~~~~~~~h--- 393 (701)
..+...+..+++.++ +. +++.. .++.|.+||+.+++..+.+..
T Consensus 116 -----------------------------~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~ 166 (343)
T 2qe8_A 116 -----------------------------TLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPG 166 (343)
T ss_dssp -----------------------------SCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTT
T ss_pred -----------------------------cccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCc
Confidence 012344578888875 44 44444 578899999987776554421
Q ss_pred ---------------------------CCCeEEEEEeeCCCCEEEEEEcCC-cEEEEeCC---CCc--------EEEEec
Q 005352 394 ---------------------------SNYVTCVHFNPVDDNYFISGSIDG-KVRIWAVL---SCH--------VVDWVD 434 (701)
Q Consensus 394 ---------------------------~~~V~~l~f~p~~~~~l~sgs~dg-~v~iwd~~---~~~--------~~~~~~ 434 (701)
...+..|+|+| +++.|+.+...+ .|..++.. .+. .+....
T Consensus 167 ~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~-dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g 245 (343)
T 2qe8_A 167 IAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDA-ENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYS 245 (343)
T ss_dssp TSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECT-TSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEE
T ss_pred ccccccceeECCEEEEeccCCCceeceecccceeEecc-CCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecc
Confidence 02368899999 888888887666 44444421 111 011223
Q ss_pred CCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEE
Q 005352 435 IRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVR 512 (701)
Q Consensus 435 ~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~ 512 (701)
.......++++++|..+++...++.|.+||..+++.... .. .......+++++.+ ++.++++.+..+.+.
T Consensus 246 ~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~----~~---~~~~~~p~~va~~~-~g~l~v~~~~~~~~~ 315 (343)
T 2qe8_A 246 EKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLL----VT---DEKLSWTDSFNFGS-DGYLYFDCNQLHHSA 315 (343)
T ss_dssp ECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEE----EE---CGGGSCEEEEEECT-TSCEEEEECCGGGSG
T ss_pred cCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEE----EE---CCceecCCeeEECC-CCcEEEEeCcccccc
Confidence 344566799999999888888899999999855543211 11 11235678999988 566666666544443
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=5.8e-06 Score=81.57 Aligned_cols=202 Identities=6% Similarity=-0.050 Sum_probs=134.5
Q ss_pred cEEEEEEccCCCEEEEEeC--CCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCC
Q 005352 252 SILTMKFSPDGQYLASAGD--DGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSE 329 (701)
Q Consensus 252 ~I~~l~fspdg~~Lasgs~--Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (701)
....|.|++++.+.++.+. ++.|++.|+.+++.+..+.+..
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~------------------------------------- 64 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDD------------------------------------- 64 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCT-------------------------------------
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCC-------------------------------------
Confidence 3679999998765565554 5799999999988665543211
Q ss_pred ccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCCeEEEEECCCcEEEEECCCCeeeeeecCC-CCeEEEEEeeCCCC
Q 005352 330 SACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHS-NYVTCVHFNPVDDN 408 (701)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~h~-~~V~~l~f~p~~~~ 408 (701)
+ .....+++..+...++.-.++.+.++|..+.+.+..+... .. ...+++ +++
T Consensus 65 -----------------------~-~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~--g~glt~-Dg~ 117 (266)
T 2iwa_A 65 -----------------------S-YFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKD--GWGLAT-DGK 117 (266)
T ss_dssp -----------------------T-CCEEEEEEETTEEEEEETTCSEEEEEETTTTEEEEEEECCSSS--CCEEEE-CSS
T ss_pred -----------------------C-cceEEEEEeCCEEEEEEecCCEEEEEECCCCcEEEEEECCCCC--eEEEEE-CCC
Confidence 1 1112345543224444556889999999999999998754 32 234556 666
Q ss_pred EEEEEEcCCcEEEEeCCCCcEEEEecCC------CcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEee---
Q 005352 409 YFISGSIDGKVRIWAVLSCHVVDWVDIR------QIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVH--- 479 (701)
Q Consensus 409 ~l~sgs~dg~v~iwd~~~~~~~~~~~~~------~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~--- 479 (701)
.++++..++.|.++|..+.+.+..+... ..++.+.|. +|...+....++.|.+.|..+++......+.-.
T Consensus 118 ~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~ 196 (266)
T 2iwa_A 118 ILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKK 196 (266)
T ss_dssp SEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHH
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccc
Confidence 6666667889999999998877554422 136778888 675444444578999999999886544332100
Q ss_pred --cccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCc
Q 005352 480 --SKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN 518 (701)
Q Consensus 480 --~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~ 518 (701)
...........+++|.|+...+++++...+.|.+.++..
T Consensus 197 ~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 197 LIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp HHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred cccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence 011122346789999996556667777788998888654
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.59 E-value=2.7e-06 Score=96.76 Aligned_cols=187 Identities=7% Similarity=-0.000 Sum_probs=125.6
Q ss_pred CCcEEEEECCCCeeeeeecCCCC---------------------------------eEEEEEeeCCCCEEEEEEcCC---
Q 005352 374 DKTVRLWRVGNDHCLRVFPHSNY---------------------------------VTCVHFNPVDDNYFISGSIDG--- 417 (701)
Q Consensus 374 dg~I~iWd~~~~~~~~~~~h~~~---------------------------------V~~l~f~p~~~~~l~sgs~dg--- 417 (701)
++.|+.+|..+++.+..+..... ...++++| +.+.++.+..++
T Consensus 189 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~-~~~~vy~~~~~~~~w 267 (677)
T 1kb0_A 189 RGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDA-ELNTMYVGTGNGSPW 267 (677)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESS
T ss_pred CCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcC-CCCEEEEECCCCccc
Confidence 68999999999999887752111 13577888 777888777664
Q ss_pred ----------------cEEEEeCCCCcEEEEec---CC-------CcEEEEEEeeCC---CeEEEEecCCcEEEEECCCC
Q 005352 418 ----------------KVRIWAVLSCHVVDWVD---IR-------QIVTAVCYRPDG---QGGIVGSMMGDCRFYNVSDN 468 (701)
Q Consensus 418 ----------------~v~iwd~~~~~~~~~~~---~~-------~~i~~i~~sp~g---~~l~~gs~dg~v~i~d~~~~ 468 (701)
.|..+|..+++.+-.+. +. ....-+....+| ..+++++.+|.++++|..++
T Consensus 268 ~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG 347 (677)
T 1kb0_A 268 SHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNG 347 (677)
T ss_dssp CHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTC
T ss_pred cCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCC
Confidence 49999999998874332 11 123333444577 68899999999999999999
Q ss_pred eeeeeeeEEeecc---cCCCC------------------------CCeeEEEEecCCCCEEEEEEC--------------
Q 005352 469 HLELDAEICVHSK---KKAPC------------------------KRITGFQFLPQDSSKVMVSCA-------------- 507 (701)
Q Consensus 469 ~~~~~~~~~~~~~---~~~~~------------------------~~i~~l~~~p~~~~~l~~~s~-------------- 507 (701)
++.....+..... ..... ..-..++++| +..++++...
T Consensus 348 ~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp-~~~~~yv~~~~~~~~~~~~~~~~~ 426 (677)
T 1kb0_A 348 KFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNP-QTGLVYLPAQNVPVNLMDDKKWEF 426 (677)
T ss_dssp CEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEET-TTTEEEEEEEECCCEEEECTTCCT
T ss_pred CEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcC-CCCEEEEeChhcceeeeccccccc
Confidence 8765433211000 00000 0112567888 4556665433
Q ss_pred -----------------------------CCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 005352 508 -----------------------------DSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNC 558 (701)
Q Consensus 508 -----------------------------dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~ 558 (701)
.+.|..||..+........ +..++....+..++.+++.++.||.+++||.
T Consensus 427 g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~ 505 (677)
T 1kb0_A 427 NQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHA 505 (677)
T ss_dssp TCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEET
T ss_pred ccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEEC
Confidence 1679999998766655543 3334455567778889999999999999999
Q ss_pred CCCCC
Q 005352 559 IGHEE 563 (701)
Q Consensus 559 ~~~~~ 563 (701)
.+++.
T Consensus 506 ~tG~~ 510 (677)
T 1kb0_A 506 ATGEK 510 (677)
T ss_dssp TTCCE
T ss_pred CCCce
Confidence 99884
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.58 E-value=6.9e-09 Score=109.38 Aligned_cols=180 Identities=8% Similarity=0.051 Sum_probs=102.3
Q ss_pred CCeEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCC--CcEE-E
Q 005352 365 NNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIR--QIVT-A 441 (701)
Q Consensus 365 ~~~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~--~~i~-~ 441 (701)
++.+++++.|+.|+.||..+++.+..+.. +.+.+..+.. ++..+++++.||.|+.||..+++.+...... ..+. +
T Consensus 9 ~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~-~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~s 86 (369)
T 2hz6_A 9 ETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVPTHV-EEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQAS 86 (369)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTC
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEecC-CCceecceEc-CCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccC
Confidence 44899999999999999999999988876 5565555555 6777888889999999999888765332211 1110 0
Q ss_pred EEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccce
Q 005352 442 VCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIG 521 (701)
Q Consensus 442 i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~ 521 (701)
..+. .+..+++++.++.++.||..+++........ . ...++| ++..+++++.++.|+.||..+...
T Consensus 87 p~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~---------~---~~~~~p-~~~~v~~~~~dg~v~a~d~~tG~~ 152 (369)
T 2hz6_A 87 PCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSA---------F---ADSLSP-STSLLYLGRTEYTITMYDTKTREL 152 (369)
T ss_dssp SCC------CCCCEEEEEEEEECCC-----------------------------------EEEEEEEEEEECCCSSSSSC
T ss_pred ceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCC---------C---cccccc-cCCEEEEEecCCEEEEEECCCCCE
Confidence 0111 3456788888999999999988765432211 0 134456 677888999999999999876544
Q ss_pred eeecccCCCCeEEEEEecCC---CEEEEEeCCCcEEEEeCCCCC
Q 005352 522 KYKGLRRSGNQLSACFTSDG---KHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 522 ~~~~~~~~~~v~~l~~s~dg---~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
....... .....+++.+. ..+++++.||.|+.||..+++
T Consensus 153 ~W~~~~~--~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~ 194 (369)
T 2hz6_A 153 RWNATYF--DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGD 194 (369)
T ss_dssp CCEEEEE--EECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCC
T ss_pred EEeEecc--cccCccccCCccccceEEEECCCCEEEEEECCCCc
Confidence 3332111 01122233332 567778899999999999887
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.58 E-value=2.6e-06 Score=97.23 Aligned_cols=188 Identities=12% Similarity=0.059 Sum_probs=123.7
Q ss_pred CCCcEEEEECCCCeeeeeecCC--C------------------------------CeEEEEEeeCCCCEEEEEEcCCc--
Q 005352 373 IDKTVRLWRVGNDHCLRVFPHS--N------------------------------YVTCVHFNPVDDNYFISGSIDGK-- 418 (701)
Q Consensus 373 ~dg~I~iWd~~~~~~~~~~~h~--~------------------------------~V~~l~f~p~~~~~l~sgs~dg~-- 418 (701)
.++.|+.||..+++.+..+... . ....++++| +..+++.+..++.
T Consensus 181 ~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~-~~~~vy~~~~~g~~w 259 (689)
T 1yiq_A 181 VRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDP-ELNLLYIGVGNGSLW 259 (689)
T ss_dssp CBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEET-TTTEEEEECCCEESS
T ss_pred CCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcC-CCCEEEEeCCCCCcc
Confidence 3689999999999988776521 0 012578888 7788888887763
Q ss_pred -----------------EEEEeCCCCcEEEEec---CC-------CcEEEEEEeeCCC---eEEEEecCCcEEEEECCCC
Q 005352 419 -----------------VRIWAVLSCHVVDWVD---IR-------QIVTAVCYRPDGQ---GGIVGSMMGDCRFYNVSDN 468 (701)
Q Consensus 419 -----------------v~iwd~~~~~~~~~~~---~~-------~~i~~i~~sp~g~---~l~~gs~dg~v~i~d~~~~ 468 (701)
|..+|..+++.+-... +. .++.......+|+ .++.++.+|.++++|..++
T Consensus 260 ~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG 339 (689)
T 1yiq_A 260 DPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATG 339 (689)
T ss_dssp CHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTC
T ss_pred ccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCC
Confidence 9999999998874332 11 1222233334665 7889999999999999999
Q ss_pred eeeeeeeEEeecc--------------------cCC-----------CCCCeeEEEEecCCCCEEEEEEC----------
Q 005352 469 HLELDAEICVHSK--------------------KKA-----------PCKRITGFQFLPQDSSKVMVSCA---------- 507 (701)
Q Consensus 469 ~~~~~~~~~~~~~--------------------~~~-----------~~~~i~~l~~~p~~~~~l~~~s~---------- 507 (701)
++.....+..... ... .......++++| +..++++...
T Consensus 340 ~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp-~~~~~yv~~~~~~~~~~~~~ 418 (689)
T 1yiq_A 340 ELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNP-DTGLVYIPAHIMSAYYEHIP 418 (689)
T ss_dssp CEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEET-TTTEEEEEEEECCEEEECCS
T ss_pred CEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECC-CCCEEEEeccccceeeeecc
Confidence 8763322110000 000 001122367888 4455555422
Q ss_pred -----------------------------------CCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCc
Q 005352 508 -----------------------------------DSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSN 552 (701)
Q Consensus 508 -----------------------------------dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~ 552 (701)
++.|+.||+.+.........+ .+.....+...+.+++.|+.||.
T Consensus 419 ~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagglvf~gt~dg~ 497 (689)
T 1yiq_A 419 EAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYV-TIFNGGTLSTAGNLVFEGSADGR 497 (689)
T ss_dssp SCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSE
T ss_pred ccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCC-CCccCccceECCCEEEEECCCCc
Confidence 367999999877666554322 33334466678889999999999
Q ss_pred EEEEeCCCCCC
Q 005352 553 VYMWNCIGHEE 563 (701)
Q Consensus 553 I~iWd~~~~~~ 563 (701)
|+.||.+++++
T Consensus 498 l~a~D~~tG~~ 508 (689)
T 1yiq_A 498 VIAYAADTGEK 508 (689)
T ss_dssp EEEEETTTCCE
T ss_pred EEEEECCCCcc
Confidence 99999999984
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=1.1e-05 Score=79.46 Aligned_cols=199 Identities=7% Similarity=-0.013 Sum_probs=133.4
Q ss_pred CeEEEEEecCCeEE-EEEC--CCcEEEEECCCCeeeeeecCCC--CeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEE
Q 005352 356 EILDLSWSKNNYLL-SASI--DKTVRLWRVGNDHCLRVFPHSN--YVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV 430 (701)
Q Consensus 356 ~I~~l~~s~~~~l~-s~s~--dg~I~iWd~~~~~~~~~~~h~~--~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~ 430 (701)
....+.|++++.|+ +.+. ++.|.+.|+.+++.+..+.... ....+++. .+.++++.-.++.+.++|..+.+++
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~ 99 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNI 99 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEE
Confidence 36899999988444 4433 5899999999999998876333 33345554 3344555556889999999999888
Q ss_pred EEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCc
Q 005352 431 DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQ 510 (701)
Q Consensus 431 ~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~ 510 (701)
..+... ......++++|+.++++..++.|.++|..+.+.......... ......++.+.|. ++..++....++.
T Consensus 100 ~~i~~g-~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~---~~p~~~~nele~~--dg~lyvn~~~~~~ 173 (266)
T 2iwa_A 100 KNFTHQ-MKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYN---GHRVIRLNELEYI--NGEVWANIWQTDC 173 (266)
T ss_dssp EEEECC-SSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEET---TEECCCEEEEEEE--TTEEEEEETTSSE
T ss_pred EEEECC-CCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCC---CcccccceeEEEE--CCEEEEecCCCCe
Confidence 766544 112344667899888888889999999988765443322211 1122346677777 3555554446889
Q ss_pred EEEEeCCccce--eeeccc-----------CCCCeEEEEEecCCCEE-EEEeCCCcEEEEeCCCCC
Q 005352 511 VRILQGPNVIG--KYKGLR-----------RSGNQLSACFTSDGKHI-VSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 511 I~iwd~~~~~~--~~~~~~-----------~~~~v~~l~~s~dg~~l-~sgs~Dg~I~iWd~~~~~ 562 (701)
|.+.|..+... .+.... .....+.++|+|+++.| +++...+.|+.-++....
T Consensus 174 V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~~ 239 (266)
T 2iwa_A 174 IARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLVR 239 (266)
T ss_dssp EEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEECC
T ss_pred EEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEeccc
Confidence 99999876433 222210 12356899999998655 556677889999887653
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.57 E-value=6.4e-05 Score=74.73 Aligned_cols=197 Identities=7% Similarity=-0.002 Sum_probs=125.2
Q ss_pred cCeEEEEEecCC-eEE-EEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEE
Q 005352 355 GEILDLSWSKNN-YLL-SASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD 431 (701)
Q Consensus 355 ~~I~~l~~s~~~-~l~-s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~ 431 (701)
..+..++|.+++ .|+ +-..++.|..+++........+. .......++++|..+.++++-...+.|.++++.......
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~ 115 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV 115 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEE
Confidence 356789999865 444 44557899999997765444443 225789999998334445555556789999987544333
Q ss_pred EecC-CCcEEEEEEeeCCCeEEEEec---CCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEEC
Q 005352 432 WVDI-RQIVTAVCYRPDGQGGIVGSM---MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCA 507 (701)
Q Consensus 432 ~~~~-~~~i~~i~~sp~g~~l~~gs~---dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~ 507 (701)
.... ......++++|++..|+++.. .+.|..+++....... +. ........++++.++++.++++-..
T Consensus 116 ~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~-----~~---~~~~~~P~gia~d~~~~~lyv~d~~ 187 (267)
T 1npe_A 116 LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRI-----LA---QDNLGLPNGLTFDAFSSQLCWVDAG 187 (267)
T ss_dssp EECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEE-----EE---CTTCSCEEEEEEETTTTEEEEEETT
T ss_pred EEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEE-----EE---ECCCCCCcEEEEcCCCCEEEEEECC
Confidence 3322 256789999997766666654 3678888886543211 11 0122457899999954555566666
Q ss_pred CCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEE-eCCCcEEEEeCCCCC
Q 005352 508 DSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSA-GEDSNVYMWNCIGHE 562 (701)
Q Consensus 508 dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sg-s~Dg~I~iWd~~~~~ 562 (701)
.+.|.++|.......... ........++.. +..|+.+ ...+.|..++..+++
T Consensus 188 ~~~I~~~~~~g~~~~~~~-~~~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~ 240 (267)
T 1npe_A 188 THRAECLNPAQPGRRKVL-EGLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISK 240 (267)
T ss_dssp TTEEEEEETTEEEEEEEE-ECCCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTE
T ss_pred CCEEEEEecCCCceEEEe-cCCCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCC
Confidence 789999998743222111 122344666654 4455544 456899999988765
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.54 E-value=5.8e-07 Score=93.78 Aligned_cols=257 Identities=8% Similarity=-0.035 Sum_probs=158.7
Q ss_pred cEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEE----------cCCcEEEEeCCCCcEEEEecCC--------C
Q 005352 376 TVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGS----------IDGKVRIWAVLSCHVVDWVDIR--------Q 437 (701)
Q Consensus 376 ~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs----------~dg~v~iwd~~~~~~~~~~~~~--------~ 437 (701)
+|.++|..+++.+..+.-.... .+.++| ++++++++. .++.|.+||+.+++.+..+... .
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P-~i~~sp-Dg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~ 124 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS-LAVAGH-SGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP 124 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC-EEEECT-TSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred eEEEEECCCCeEEEEEeCCCCC-ceEECC-CCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence 8889999999999999733333 799999 888888776 3688999999999988766432 3
Q ss_pred cEEEEEEeeCCCeEEEEec--CCcEEE--EECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEE
Q 005352 438 IVTAVCYRPDGQGGIVGSM--MGDCRF--YNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRI 513 (701)
Q Consensus 438 ~i~~i~~sp~g~~l~~gs~--dg~v~i--~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~i 513 (701)
....++++|||++++++.. ...+.+ +|+.+ . ..+... .+ +.+.|.....+++.+.|+.+.+
T Consensus 125 ~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t--v---~~i~v~-----~~-----~~~~p~g~~~~~~~~~dg~~~~ 189 (368)
T 1mda_H 125 RVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD--D---QLTKSA-----SC-----FHIHPGAAATHYLGSCPASLAA 189 (368)
T ss_dssp CTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE--E---EEEECS-----SC-----CCCEEEETTEEECCCCTTSCEE
T ss_pred CcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh--c---eEEECC-----Cc-----eEEccCCCeEEEEEcCCCCEEE
Confidence 4668999999999999875 456888 88866 1 111110 00 1233444556677778888888
Q ss_pred EeCCc-----cceeee----cccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCCCCccccccccccccccCCceE
Q 005352 514 LQGPN-----VIGKYK----GLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASI 584 (701)
Q Consensus 514 wd~~~-----~~~~~~----~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (701)
.|... ...... ......+. . ++++..++..+. +.|.+.|+.+....... .... ......
T Consensus 190 vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~------~~~~-~~~~~~ 257 (368)
T 1mda_H 190 SDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKA------AIDG-NESGRK 257 (368)
T ss_dssp EECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEEC------CCCS-SCTHHH
T ss_pred EECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEE------EEEe-cccccc
Confidence 88765 211100 11122333 3 677776666666 99999998654311000 0000 000000
Q ss_pred EecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccC---C-----CCcccCCCCccCCCCccccccccch
Q 005352 585 AIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFES---F-----PKGCATWPEEKLPALSQLSSASALH 656 (701)
Q Consensus 585 a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s---~-----d~~~~~W~~~~~~~~~~~~~~~~~~ 656 (701)
+..|. -.....+.++|++ ...|++.. . ...+.++|..+...+.+++..
T Consensus 258 ~~~~~-----------------p~g~~~v~~s~dg---~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg---- 313 (368)
T 1mda_H 258 ADNFR-----------------SAGFQMVAKLKNT---DGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG---- 313 (368)
T ss_dssp HTTEE-----------------ECSSSCEEEETTT---TEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE----
T ss_pred ccccc-----------------cCcceeeEEcCCC---CEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECC----
Confidence 00000 0011124566762 23333322 1 234558999888888888655
Q ss_pred hhhhhhhhcccccccccCCCcc-EEEEec-CCCeEeEEee
Q 005352 657 KSQYKFLKSSCLCTTSSHAWGL-VIVTAG-WDGRIRSFLN 694 (701)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~g~-~ivTgg-~DG~Irvw~~ 694 (701)
...+.++++++ |+ ++++.. .++.|.+++.
T Consensus 314 --------~~p~gi~~s~D-g~~l~va~~~~~~~VsVID~ 344 (368)
T 1mda_H 314 --------HDSDAIIAAQD-GASDNYANSAGTEVLDIYDA 344 (368)
T ss_dssp --------EEECEEEECCS-SSCEEEEEETTTTEEEEEES
T ss_pred --------CCcceEEECCC-CCEEEEEccCCCCeEEEEEC
Confidence 24678888998 65 788888 5999999985
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.53 E-value=2.9e-06 Score=92.30 Aligned_cols=186 Identities=11% Similarity=0.024 Sum_probs=119.4
Q ss_pred CCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCC------------------------------------
Q 005352 374 DKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDG------------------------------------ 417 (701)
Q Consensus 374 dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg------------------------------------ 417 (701)
++.+.+.|..+.+.+.++.-.+....++++| +++++++.+.+.
T Consensus 174 ~~~vtvID~~t~~v~~qI~Vgg~pd~~~~sp-dGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~ 252 (595)
T 1fwx_A 174 VNVFTAVDADKWEVAWQVLVSGNLDNCDADY-EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQE 252 (595)
T ss_dssp EEEEEEEETTTTEEEEEEEESSCCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEE
T ss_pred CceEEEEECCCCeEEEEEEeCCCccceEECC-CCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeE
Confidence 4578899999988888877444567788888 888888877543
Q ss_pred --cEEEEeCCC--CcE-EEEecCCCcEEEEEEeeCCCeEEEEe-cCCcEEEEECCCCeeee----eeeEEeecccCCCCC
Q 005352 418 --KVRIWAVLS--CHV-VDWVDIRQIVTAVCYRPDGQGGIVGS-MMGDCRFYNVSDNHLEL----DAEICVHSKKKAPCK 487 (701)
Q Consensus 418 --~v~iwd~~~--~~~-~~~~~~~~~i~~i~~sp~g~~l~~gs-~dg~v~i~d~~~~~~~~----~~~~~~~~~~~~~~~ 487 (701)
.|.+.|..+ ++. +..+.......++.++|||+++++++ .+.+|.+||+.+.+... ........ ......
T Consensus 253 i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~-~v~vG~ 331 (595)
T 1fwx_A 253 LNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVA-EPELGL 331 (595)
T ss_dssp ETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEE-CCBCCS
T ss_pred ECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEE-EcCCCC
Confidence 467777776 434 44555555677899999999888876 47889999998542100 00000000 122335
Q ss_pred CeeEEEEecCCCCEEEEEECCCcEEEEeCCccc---------eee-ecccCCCCe-----EEEEEecCCCEEEEEeC---
Q 005352 488 RITGFQFLPQDSSKVMVSCADSQVRILQGPNVI---------GKY-KGLRRSGNQ-----LSACFTSDGKHIVSAGE--- 549 (701)
Q Consensus 488 ~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~---------~~~-~~~~~~~~v-----~~l~~s~dg~~l~sgs~--- 549 (701)
....++|+| ++..+++...|++|.+||+.... ... +...|-.+- ..+.++|||++|+++..
T Consensus 332 gP~h~aF~~-dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~sk 410 (595)
T 1fwx_A 332 GPLHTAFDG-RGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSK 410 (595)
T ss_dssp CEEEEEECT-TSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCT
T ss_pred CcceEEECC-CCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCc
Confidence 678899999 55555566669999999976522 111 111121111 12235799999999853
Q ss_pred CCcE----------EEEeCCCCC
Q 005352 550 DSNV----------YMWNCIGHE 562 (701)
Q Consensus 550 Dg~I----------~iWd~~~~~ 562 (701)
|+.+ .++|+.+++
T Consensus 411 dr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 411 DRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp TSSCCCCSSCCEEEEEEECSSSS
T ss_pred cccccCCCCCCCcceEEEcCCCc
Confidence 4432 888986655
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.50 E-value=9.1e-06 Score=85.37 Aligned_cols=232 Identities=14% Similarity=0.186 Sum_probs=141.2
Q ss_pred cccccc-ccccceEEEEEccCccch--hhhcccCceec--cCCCcEEEEEEccCCCEEEEEeCC------CcEEEEEeec
Q 005352 213 EEDAMF-CSKVQRVKVYHCKKRSKE--LSALYKGQEIQ--AHDGSILTMKFSPDGQYLASAGDD------GVVRLWQVVE 281 (701)
Q Consensus 213 ~~~~~~-~~~d~~v~vw~~~~~~~~--~~~~~~~~~l~--~H~~~I~~l~fspdg~~Lasgs~D------g~I~iWd~~~ 281 (701)
..++++ +-.+++|.|+|....... +.+.....++. .....-..+..+|+| +++++..+ |.|.+.|..+
T Consensus 95 r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T 173 (462)
T 2ece_A 95 RRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYS 173 (462)
T ss_dssp SCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTT
T ss_pred CCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCC
Confidence 344444 677899999998643221 11111101111 111245567888999 77776555 6799999888
Q ss_pred CeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEE
Q 005352 282 DERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLS 361 (701)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~ 361 (701)
.+.+.++..... ...--.++.
T Consensus 174 ~~v~~~~~~~~~-----------------------------------------------------------~~~~~Yd~~ 194 (462)
T 2ece_A 174 FEPLGKWEIDRG-----------------------------------------------------------DQYLAYDFW 194 (462)
T ss_dssp CCEEEECCSBCT-----------------------------------------------------------TCCCCCCEE
T ss_pred CeEEEEEccCCC-----------------------------------------------------------CccccceEE
Confidence 776655532211 011223577
Q ss_pred EecCC-eEEEEE-------------------CCCcEEEEECCCCeeeeeecCC---CCeEEEEE--eeCCCCEEEEEE--
Q 005352 362 WSKNN-YLLSAS-------------------IDKTVRLWRVGNDHCLRVFPHS---NYVTCVHF--NPVDDNYFISGS-- 414 (701)
Q Consensus 362 ~s~~~-~l~s~s-------------------~dg~I~iWd~~~~~~~~~~~h~---~~V~~l~f--~p~~~~~l~sgs-- 414 (701)
|+|++ .++++. ...+|.+||+.+++.+.++... .....+.| +| +++++++++
T Consensus 195 ~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~P-dg~~aYV~~e~ 273 (462)
T 2ece_A 195 WNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDP-TKLMGFINMVV 273 (462)
T ss_dssp EETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSST-TCCEEEEEEEE
T ss_pred ECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECC-CCCEEEEEEee
Confidence 88888 666663 3789999999999888888743 34556666 88 888877666
Q ss_pred ----cCCcEEEEeCCCCcE-----EEEecC----------------CCcEEEEEEeeCCCeEEEEec-CCcEEEEECCCC
Q 005352 415 ----IDGKVRIWAVLSCHV-----VDWVDI----------------RQIVTAVCYRPDGQGGIVGSM-MGDCRFYNVSDN 468 (701)
Q Consensus 415 ----~dg~v~iwd~~~~~~-----~~~~~~----------------~~~i~~i~~sp~g~~l~~gs~-dg~v~i~d~~~~ 468 (701)
.+++|.+|....++. +..... ...+..|.++|||++|+++.. .+.|.+||+...
T Consensus 274 ~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~ 353 (462)
T 2ece_A 274 SLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNP 353 (462)
T ss_dssp ETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSST
T ss_pred eccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCC
Confidence 566887766554421 111110 245788999999999998876 688999998633
Q ss_pred -eeeeeeeEEeeccc--------CCCCCCeeEEEEecCCCCEEEEEE
Q 005352 469 -HLELDAEICVHSKK--------KAPCKRITGFQFLPQDSSKVMVSC 506 (701)
Q Consensus 469 -~~~~~~~~~~~~~~--------~~~~~~i~~l~~~p~~~~~l~~~s 506 (701)
...+...+...... ......-..++++| ++++|+++.
T Consensus 354 ~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSp-DGk~LyVaN 399 (462)
T 2ece_A 354 FKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISR-DGRRVYVTN 399 (462)
T ss_dssp TSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECT-TSSEEEEEC
T ss_pred CCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcC-CCCEEEEEc
Confidence 33333333322110 00112356788999 677777665
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.50 E-value=3.4e-06 Score=95.99 Aligned_cols=192 Identities=6% Similarity=-0.088 Sum_probs=120.1
Q ss_pred CCeEEEEECCCcEEEEECCCCeeeeeecCC------CCeEEEEEeeCCCCEEEEEEc------CCcEEEEeCCCCcEEEE
Q 005352 365 NNYLLSASIDKTVRLWRVGNDHCLRVFPHS------NYVTCVHFNPVDDNYFISGSI------DGKVRIWAVLSCHVVDW 432 (701)
Q Consensus 365 ~~~l~s~s~dg~I~iWd~~~~~~~~~~~h~------~~V~~l~f~p~~~~~l~sgs~------dg~v~iwd~~~~~~~~~ 432 (701)
++.++.++.|+.|..+|..+++.+..+... ..+..--.. .+..++.++. ++.|+.||..+++.+-.
T Consensus 128 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~ 205 (677)
T 1kb0_A 128 KGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWR 205 (677)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEE
Confidence 457888899999999999999998887633 122221111 2345555543 68999999999988733
Q ss_pred ecCCC---------------------------------cEEEEEEeeCCCeEEEEecCC-------------------cE
Q 005352 433 VDIRQ---------------------------------IVTAVCYRPDGQGGIVGSMMG-------------------DC 460 (701)
Q Consensus 433 ~~~~~---------------------------------~i~~i~~sp~g~~l~~gs~dg-------------------~v 460 (701)
..... ....++++|++..+++++.++ .|
T Consensus 206 ~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv 285 (677)
T 1kb0_A 206 WFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASI 285 (677)
T ss_dssp EESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEE
T ss_pred eccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEE
Confidence 32111 113578899999999988764 49
Q ss_pred EEEECCCCeeeeeeeEEeeccc-CCCCCCeeEEEEecCCC---CEEEEEECCCcEEEEeCCccceeeecccC--------
Q 005352 461 RFYNVSDNHLELDAEICVHSKK-KAPCKRITGFQFLPQDS---SKVMVSCADSQVRILQGPNVIGKYKGLRR-------- 528 (701)
Q Consensus 461 ~i~d~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~~p~~~---~~l~~~s~dg~I~iwd~~~~~~~~~~~~~-------- 528 (701)
..+|..+++.....+...+... ........-+.... ++ ..+++++.+|.|+++|..+..........
T Consensus 286 ~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~-dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~ 364 (677)
T 1kb0_A 286 VALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKI-AGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGY 364 (677)
T ss_dssp EEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEE-TTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEE
T ss_pred EEEECCCCCEEEEEecCCCcccccccCCCcEEEeccc-CCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCccccc
Confidence 9999999987655432211100 00011222223333 44 67888999999999998765543322100
Q ss_pred ---CCCe------------------------EEEEEecCCCEEEEEeCCCcEEEEeCC
Q 005352 529 ---SGNQ------------------------LSACFTSDGKHIVSAGEDSNVYMWNCI 559 (701)
Q Consensus 529 ---~~~v------------------------~~l~~s~dg~~l~sgs~Dg~I~iWd~~ 559 (701)
...+ ..++++|++.++++...+-...+|...
T Consensus 365 d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~ 422 (677)
T 1kb0_A 365 DKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDK 422 (677)
T ss_dssp CTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECT
T ss_pred CCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccc
Confidence 0001 157889999999888766555555443
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=2.2e-05 Score=80.60 Aligned_cols=198 Identities=10% Similarity=-0.011 Sum_probs=119.1
Q ss_pred CeEEEEEec-CCeEEEEECCCcEEEEECCCCeeeeeec-----CCCCeEEEEEeeCCCCEEEEEEc--------------
Q 005352 356 EILDLSWSK-NNYLLSASIDKTVRLWRVGNDHCLRVFP-----HSNYVTCVHFNPVDDNYFISGSI-------------- 415 (701)
Q Consensus 356 ~I~~l~~s~-~~~l~s~s~dg~I~iWd~~~~~~~~~~~-----h~~~V~~l~f~p~~~~~l~sgs~-------------- 415 (701)
.+..|++.+ ++.|+.+...+.|..+|..++....... .......+++.+.+++++++-..
T Consensus 81 ~p~gi~~~~~~g~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~ 160 (322)
T 2fp8_A 81 RTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDT 160 (322)
T ss_dssp CEEEEEEETTTTEEEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHH
T ss_pred CCceEEEcCCCCcEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcc
Confidence 467899997 6777777666668888877654322111 12357888888634555555322
Q ss_pred ---CCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEE-ecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeE
Q 005352 416 ---DGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVG-SMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITG 491 (701)
Q Consensus 416 ---dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g-s~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~ 491 (701)
++.|..||..+++.......-.....++++|+++.|+++ +..+.|..|++....... ..... . . .. ...
T Consensus 161 ~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~-~~~~~-~-~---~g-P~g 233 (322)
T 2fp8_A 161 SDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGT-AEVLV-K-I---PN-PGN 233 (322)
T ss_dssp TCCCEEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTC-EEEEE-E-C---SS-EEE
T ss_pred cCCCceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCc-cceEE-e-C---CC-CCC
Confidence 367888998777655443333446679999999877666 556899999987532100 00001 1 1 12 678
Q ss_pred EEEecCCCCEEEEEEC----------CCcEEEEeCCcc-ceeeecccC--CCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 005352 492 FQFLPQDSSKVMVSCA----------DSQVRILQGPNV-IGKYKGLRR--SGNQLSACFTSDGKHIVSAGEDSNVYMWNC 558 (701)
Q Consensus 492 l~~~p~~~~~l~~~s~----------dg~I~iwd~~~~-~~~~~~~~~--~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~ 558 (701)
+++.+ ++.+.++... .+.|..+|.... ...+..... ...+..+++ .+++++++....+.|..+++
T Consensus 234 i~~d~-~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~ 311 (322)
T 2fp8_A 234 IKRNA-DGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVY 311 (322)
T ss_dssp EEECT-TSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC
T ss_pred eEECC-CCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEec
Confidence 88988 5666655544 467888886422 222222111 234666666 46666666667889999998
Q ss_pred CCCC
Q 005352 559 IGHE 562 (701)
Q Consensus 559 ~~~~ 562 (701)
....
T Consensus 312 ~~~~ 315 (322)
T 2fp8_A 312 DKKG 315 (322)
T ss_dssp ----
T ss_pred cccc
Confidence 6544
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.48 E-value=3.3e-05 Score=75.30 Aligned_cols=186 Identities=8% Similarity=0.028 Sum_probs=122.9
Q ss_pred CeEEEEEecCC-eEEEEECCC--cEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEE
Q 005352 356 EILDLSWSKNN-YLLSASIDK--TVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDW 432 (701)
Q Consensus 356 ~I~~l~~s~~~-~l~s~s~dg--~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~ 432 (701)
....|.|+ ++ ++.+.+.+| .|+++|+.+++.+..+............+..+.+++..-.++.+.+||..+.+.+..
T Consensus 44 ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~t 122 (262)
T 3nol_A 44 FTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRS 122 (262)
T ss_dssp EEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEE
T ss_pred ccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEE
Confidence 34788998 56 666667766 899999999999988875554444333331344444555688999999999998877
Q ss_pred ecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEE
Q 005352 433 VDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVR 512 (701)
Q Consensus 433 ~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~ 512 (701)
+..... ...++++++.|+++..++.|.++|..+.+.......... ......++.+.|. ++.+++..-.++.|.
T Consensus 123 i~~~~e--G~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~---g~~~~~lNELe~~--~G~lyan~w~~~~I~ 195 (262)
T 3nol_A 123 FNYDGE--GWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAH---GEELPELNELEWV--DGEIFANVWQTNKIV 195 (262)
T ss_dssp EECSSC--CCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEET---TEECCCEEEEEEE--TTEEEEEETTSSEEE
T ss_pred EECCCC--ceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccC---CccccccceeEEE--CCEEEEEEccCCeEE
Confidence 665442 234446888888887788899999998776544332211 1112335556765 455554444688999
Q ss_pred EEeCCcccee--eecc----------cCCCCeEEEEEecCCCEEEEEeC
Q 005352 513 ILQGPNVIGK--YKGL----------RRSGNQLSACFTSDGKHIVSAGE 549 (701)
Q Consensus 513 iwd~~~~~~~--~~~~----------~~~~~v~~l~~s~dg~~l~sgs~ 549 (701)
+.|..+.... +... ......+.++|+|+++.|+..+.
T Consensus 196 vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 196 RIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred EEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 9998754322 2211 11245689999999887777664
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.47 E-value=1.3e-05 Score=91.24 Aligned_cols=180 Identities=9% Similarity=0.079 Sum_probs=117.6
Q ss_pred EEEEecCC-eEEEEECCC-------------------cEEEEECCCCeeeeeec---CC-------CCeEEEEEeeCCCC
Q 005352 359 DLSWSKNN-YLLSASIDK-------------------TVRLWRVGNDHCLRVFP---HS-------NYVTCVHFNPVDDN 408 (701)
Q Consensus 359 ~l~~s~~~-~l~s~s~dg-------------------~I~iWd~~~~~~~~~~~---h~-------~~V~~l~f~p~~~~ 408 (701)
.+++.+++ .++.++.++ .|..||..+++.+..++ |. ..+....... ++.
T Consensus 239 ~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~-~G~ 317 (689)
T 1yiq_A 239 SFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPI-DGK 317 (689)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEE-TTE
T ss_pred ceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeecc-CCc
Confidence 56777765 777777665 39999999999998876 21 1222222222 454
Q ss_pred ---EEEEEEcCCcEEEEeCCCCcEEEEecCCC--c--------------------------------------EEEEEEe
Q 005352 409 ---YFISGSIDGKVRIWAVLSCHVVDWVDIRQ--I--------------------------------------VTAVCYR 445 (701)
Q Consensus 409 ---~l~sgs~dg~v~iwd~~~~~~~~~~~~~~--~--------------------------------------i~~i~~s 445 (701)
.++.++.+|.++++|..+++++....... . -..++|+
T Consensus 318 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~d 397 (689)
T 1yiq_A 318 PRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYN 397 (689)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEE
T ss_pred EEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceEC
Confidence 78889999999999999998873211110 0 1126888
Q ss_pred eCCCeEEEEec---------------------------------------------CCcEEEEECCCCeeeeeeeEEeec
Q 005352 446 PDGQGGIVGSM---------------------------------------------MGDCRFYNVSDNHLELDAEICVHS 480 (701)
Q Consensus 446 p~g~~l~~gs~---------------------------------------------dg~v~i~d~~~~~~~~~~~~~~~~ 480 (701)
|+...+++... +|.|..||+.+++........
T Consensus 398 p~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~--- 474 (689)
T 1yiq_A 398 PDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYV--- 474 (689)
T ss_dssp TTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEES---
T ss_pred CCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCC---
Confidence 98888887632 377999999999876543321
Q ss_pred ccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCC-CCeEEEEEecCCC-EEEEEeC
Q 005352 481 KKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRS-GNQLSACFTSDGK-HIVSAGE 549 (701)
Q Consensus 481 ~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~-~~v~~l~~s~dg~-~l~sgs~ 549 (701)
..+..-.+.. .+.++++++.|+.|+.||..+.....+..... ....-+.|..+|+ |+++.+.
T Consensus 475 ------~~~~~g~~~t-agglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~~~~G 538 (689)
T 1yiq_A 475 ------TIFNGGTLST-AGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVTFMAG 538 (689)
T ss_dssp ------SSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred ------CCccCccceE-CCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEEEEec
Confidence 1112223444 56789999999999999999877665543222 2223466778886 5555443
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.45 E-value=2.3e-06 Score=93.00 Aligned_cols=186 Identities=15% Similarity=0.126 Sum_probs=127.8
Q ss_pred CC-eEEEE-ECCCcEEEEECCCCeeeeeec--CCCCeEEEEE-e-eCCCCEEEEEE------------------cCCcEE
Q 005352 365 NN-YLLSA-SIDKTVRLWRVGNDHCLRVFP--HSNYVTCVHF-N-PVDDNYFISGS------------------IDGKVR 420 (701)
Q Consensus 365 ~~-~l~s~-s~dg~I~iWd~~~~~~~~~~~--h~~~V~~l~f-~-p~~~~~l~sgs------------------~dg~v~ 420 (701)
+| +++.. ..+..|.+.|+.+.++.+.+. ....+..+++ . | ++.++++++ .++.+.
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p-~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWP-RSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSS-BCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecC-CCcEEEEecccccccCCCCcccccccccCceEE
Confidence 66 45444 456679999999999988544 4566888888 4 7 888888875 245799
Q ss_pred EEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecCC--------------------------------------cEEE
Q 005352 421 IWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMG--------------------------------------DCRF 462 (701)
Q Consensus 421 iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg--------------------------------------~v~i 462 (701)
+.|..+.++...+...+....++++|+|+++++.+.+. .|.+
T Consensus 179 vID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~V 258 (595)
T 1fwx_A 179 AVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKV 258 (595)
T ss_dssp EEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEE
T ss_pred EEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEE
Confidence 99999998886665544667788999999999988653 2444
Q ss_pred EECCC--CeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEE-CCCcEEEEeCCccce-----------eeecccC
Q 005352 463 YNVSD--NHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSC-ADSQVRILQGPNVIG-----------KYKGLRR 528 (701)
Q Consensus 463 ~d~~~--~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s-~dg~I~iwd~~~~~~-----------~~~~~~~ 528 (701)
.|..+ ++.. ...+. -.....++.++| +++++++++ .+.+|.++|..+... ......-
T Consensus 259 ID~~~~~~~~~-~~~Ip-------vg~~PhGv~~sP-DGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~v 329 (595)
T 1fwx_A 259 VDGRKEASSLF-TRYIP-------IANNPHGCNMAP-DKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL 329 (595)
T ss_dssp EECSGGGCCSS-EEEEE-------EESSCCCEEECT-TSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBC
T ss_pred EeCcccCCcee-EEEEe-------cCCCceEEEEcC-CCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCC
Confidence 45444 1110 00010 012456789999 566655555 589999999885421 1112224
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 005352 529 SGNQLSACFTSDGKHIVSAGEDSNVYMWNCIG 560 (701)
Q Consensus 529 ~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~ 560 (701)
......++|+|+|...++.-.|+.|.+||++.
T Consensus 330 G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 330 GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp CSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred CCCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence 45678999999994445566899999999876
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.43 E-value=0.00042 Score=68.71 Aligned_cols=176 Identities=5% Similarity=-0.108 Sum_probs=106.0
Q ss_pred cCeEEEEEecCC-eEE-EEECCCcEEEEECCCCeeeeeecC-CCCeEEEEEeeCCCCEEEEEEc---CCcEEEEeCCCCc
Q 005352 355 GEILDLSWSKNN-YLL-SASIDKTVRLWRVGNDHCLRVFPH-SNYVTCVHFNPVDDNYFISGSI---DGKVRIWAVLSCH 428 (701)
Q Consensus 355 ~~I~~l~~s~~~-~l~-s~s~dg~I~iWd~~~~~~~~~~~h-~~~V~~l~f~p~~~~~l~sgs~---dg~v~iwd~~~~~ 428 (701)
.....+++.+++ .|+ +-...+.|.++++........... ......++++| ++..|+.+.. .+.|..+++....
T Consensus 79 ~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~-~~g~lyv~~~~~~~~~I~~~~~dg~~ 157 (267)
T 1npe_A 79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDP-VRGNLYWTDWNRDNPKIETSHMDGTN 157 (267)
T ss_dssp CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEET-TTTEEEEEECCSSSCEEEEEETTSCC
T ss_pred CCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEee-CCCEEEEEECCCCCcEEEEEecCCCC
Confidence 356788999864 444 445567899999875433222322 25678999999 6555555443 3678888886543
Q ss_pred EEEEe-cCCCcEEEEEEeeCCCeEEEEe-cCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEE
Q 005352 429 VVDWV-DIRQIVTAVCYRPDGQGGIVGS-MMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSC 506 (701)
Q Consensus 429 ~~~~~-~~~~~i~~i~~sp~g~~l~~gs-~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s 506 (701)
..... ..-.....++++|++..|+++. ..+.|..+++........ .. ......+++.. ++.++++..
T Consensus 158 ~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~----~~-----~~~~P~gi~~d--~~~lyva~~ 226 (267)
T 1npe_A 158 RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKV----LE-----GLQYPFAVTSY--GKNLYYTDW 226 (267)
T ss_dssp CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEE----EE-----CCCSEEEEEEE--TTEEEEEET
T ss_pred cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEE----ec-----CCCCceEEEEe--CCEEEEEEC
Confidence 22222 2234688999999877666554 567899999975432211 11 11233556543 344555445
Q ss_pred CCCcEEEEeCCccceeeecccC-CCCeEEEEEecCCC
Q 005352 507 ADSQVRILQGPNVIGKYKGLRR-SGNQLSACFTSDGK 542 (701)
Q Consensus 507 ~dg~I~iwd~~~~~~~~~~~~~-~~~v~~l~~s~dg~ 542 (701)
..+.|.++|..+.......... ......+++.|++.
T Consensus 227 ~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 227 KTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp TTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred CCCeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence 5789999998754433322212 22466777877764
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.43 E-value=2.4e-06 Score=87.83 Aligned_cols=180 Identities=14% Similarity=0.048 Sum_probs=109.4
Q ss_pred CeEEEEEecCCeEEEEECCCcEEEEECCCCeeeeeecCCCC-eEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEe-
Q 005352 356 EILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNY-VTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV- 433 (701)
Q Consensus 356 ~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~-V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~- 433 (701)
.+.++...+++.|+.++.+ |..+|. +++.+..+..... .....+. +..+..++.++.|..+|.. ++.....
T Consensus 61 ~~~~~~~~~~g~l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~---~~~l~v~t~~~~l~~~d~~-g~~~~~~~ 133 (330)
T 3hxj_A 61 IECRPSIGKDGTIYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF---EDILYVTSMDGHLYAINTD-GTEKWRFK 133 (330)
T ss_dssp EEECCEETTTTEECCSSCE--EEEECC-CGGGGGGSCC-----CCEEEE---TTEEEEECTTSEEEEECTT-SCEEEEEE
T ss_pred cccceEEecCCcEEEecCc--EEEECC-CCcEEEEEECCCCcccCceEE---CCEEEEEecCCEEEEEcCC-CCEEEEEc
Confidence 3455666667766666555 888886 6655544442222 2223332 4567778888999999998 6655333
Q ss_pred cCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEE
Q 005352 434 DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRI 513 (701)
Q Consensus 434 ~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~i 513 (701)
.....+.++...+++. +++++.++.+..||.. ++...... . ....+..+...+ ++. +.+++ +.|..
T Consensus 134 ~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~--~------~~~~~~~~~~d~-~g~-l~v~t--~~l~~ 199 (330)
T 3hxj_A 134 TKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFK--T------NDAITSAASIGK-DGT-IYFGS--DKVYA 199 (330)
T ss_dssp CSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEE--C------SSCCCSCCEECT-TCC-EEEES--SSEEE
T ss_pred CCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEe--c------CCCceeeeEEcC-CCE-EEEEe--CEEEE
Confidence 3334455666666665 6778888999999988 55433221 1 122344555544 344 45555 88999
Q ss_pred EeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 005352 514 LQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNC 558 (701)
Q Consensus 514 wd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~ 558 (701)
+| .+.............+.++...++|. |..++.++.|+.++.
T Consensus 200 ~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~ 242 (330)
T 3hxj_A 200 IN-PDGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINP 242 (330)
T ss_dssp EC-TTSCEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECT
T ss_pred EC-CCCcEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECC
Confidence 99 54444444333445677888888875 555667788888873
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.40 E-value=2e-05 Score=80.79 Aligned_cols=186 Identities=13% Similarity=0.033 Sum_probs=116.6
Q ss_pred eEEEEEecCCeEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEE-Eec
Q 005352 357 ILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD-WVD 434 (701)
Q Consensus 357 I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~-~~~ 434 (701)
+.++...+++.++.++.++.|..+|.. ++.+..+. ....+.++.+.+ ++.+++ ++ +.|..+| .+++... ...
T Consensus 139 ~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~-~g~l~v-~t--~~l~~~d-~~g~~~~~~~~ 212 (330)
T 3hxj_A 139 YATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGK-DGTIYF-GS--DKVYAIN-PDGTEKWNFYA 212 (330)
T ss_dssp CSCCEECTTSCEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECT-TCCEEE-ES--SSEEEEC-TTSCEEEEECC
T ss_pred eeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcC-CCEEEE-Ee--CEEEEEC-CCCcEEEEEcc
Confidence 444555667777788888999999998 77766665 344566777765 666544 44 7899999 6665553 333
Q ss_pred CCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEE
Q 005352 435 IRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRIL 514 (701)
Q Consensus 435 ~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iw 514 (701)
....+.++...++| .|.+++.++.+..++..... .... ... ...+..+.+.+ ...|.+++.++.|..+
T Consensus 213 ~~~~~~~~~~~~~g-~l~v~t~~~gl~~~~~~g~~-~~~~--~~~------~~~~~~~~~~~--~g~l~v~t~~ggl~~~ 280 (330)
T 3hxj_A 213 GYWTVTRPAISEDG-TIYVTSLDGHLYAINPDGTE-KWRF--KTG------KRIESSPVIGN--TDTIYFGSYDGHLYAI 280 (330)
T ss_dssp SSCCCSCCEECTTS-CEEEEETTTEEEEECTTSCE-EEEE--ECS------SCCCSCCEECT--TSCEEEECTTCEEEEE
T ss_pred CCcceeceEECCCC-eEEEEcCCCeEEEECCCCCE-eEEe--eCC------CCccccceEcC--CCeEEEecCCCCEEEE
Confidence 34557778888776 56667778888888754332 2211 111 11122333432 4578888889899999
Q ss_pred eCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 515 QGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 515 d~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
|.. .............+.++...++|. |..++.+|.+++......+
T Consensus 281 d~~-g~~~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~~~ 326 (330)
T 3hxj_A 281 NPD-GTEKWNFETGSWIIATPVIDENGT-IYFGTRNGKFYALFNLEHH 326 (330)
T ss_dssp CTT-SCEEEEEECSSCCCSCCEECTTCC-EEEECTTSCEEEEEC----
T ss_pred CCC-CcEEEEEEcCCccccceEEcCCCE-EEEEcCCCeEEEEeccccc
Confidence 963 332222222445566777777776 5668889999998866543
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.39 E-value=3.2e-05 Score=75.40 Aligned_cols=187 Identities=10% Similarity=0.006 Sum_probs=123.6
Q ss_pred cEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCcc
Q 005352 252 SILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESA 331 (701)
Q Consensus 252 ~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (701)
-...|.|+ ++.+..+.+.+|.|+++|+.+++.+..+ +..
T Consensus 56 ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~--------------------------------------- 94 (268)
T 3nok_A 56 FTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLG--------------------------------------- 94 (268)
T ss_dssp CEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECT---------------------------------------
T ss_pred ccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCC---------------------------------------
Confidence 34788887 4677788888999999999998754433 111
Q ss_pred EEEcCCccccccCCCeEEEcCCccCeEEEEEecCCeEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEE
Q 005352 332 CVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFI 411 (701)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~ 411 (701)
...--.+++..+..++..-.++.+.+||..+.+.+.++.....-..++ + ++..|+
T Consensus 95 ----------------------~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eGwGLt--~-Dg~~L~ 149 (268)
T 3nok_A 95 ----------------------NIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRYSGEGWGLC--Y-WNGKLV 149 (268)
T ss_dssp ----------------------TCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEECSSCCCCEE--E-ETTEEE
T ss_pred ----------------------CcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeCCCceeEEe--c-CCCEEE
Confidence 001122444333344445578999999999999999998655444555 4 567777
Q ss_pred EEEcCCcEEEEeCCCCcEEEEecCC------CcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEee-c--c-
Q 005352 412 SGSIDGKVRIWAVLSCHVVDWVDIR------QIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVH-S--K- 481 (701)
Q Consensus 412 sgs~dg~v~iwd~~~~~~~~~~~~~------~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~-~--~- 481 (701)
.+..++.|.++|..+.+.+..+... ..++.+.|. +|+..+..-.++.|.+.|..+++......+.-. . .
T Consensus 150 vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~ 228 (268)
T 3nok_A 150 RSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAG 228 (268)
T ss_dssp EECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTT
T ss_pred EECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccc
Confidence 7777889999999998877554321 235667776 775444444688999999999887654443211 0 0
Q ss_pred -cCCCCCCeeEEEEecCCCCEEEEE
Q 005352 482 -KKAPCKRITGFQFLPQDSSKVMVS 505 (701)
Q Consensus 482 -~~~~~~~i~~l~~~p~~~~~l~~~ 505 (701)
......-.++|++.|....++++|
T Consensus 229 ~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 229 QVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp TCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred cccCcCCceEEEEEcCCCCEEEEeC
Confidence 122335679999999655555554
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.34 E-value=6.7e-05 Score=73.12 Aligned_cols=188 Identities=12% Similarity=0.084 Sum_probs=121.5
Q ss_pred EEEEEEccCCCEEEEEeCCC--cEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCc
Q 005352 253 ILTMKFSPDGQYLASAGDDG--VVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSES 330 (701)
Q Consensus 253 I~~l~fspdg~~Lasgs~Dg--~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (701)
...|.|+ ++.+..+.|.+| .|+++|+.+++.+.++.+...
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~------------------------------------- 86 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKR------------------------------------- 86 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTT-------------------------------------
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCc-------------------------------------
Confidence 4789998 777778888876 899999999986655532210
Q ss_pred cEEEcCCccccccCCCeEEEcCCccCeEEEEEecCCeEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEE
Q 005352 331 ACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYF 410 (701)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l 410 (701)
..--.++...+...+..-.++.+.+||..+.+.+..+.....-..++ + ++..|
T Consensus 87 ------------------------~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG~glt--~-dg~~L 139 (262)
T 3nol_A 87 ------------------------YFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEGWGLT--H-NDQYL 139 (262)
T ss_dssp ------------------------CCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECSSCCCCEE--E-CSSCE
T ss_pred ------------------------cceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECCCCceEEe--c-CCCEE
Confidence 01112333322233344468899999999999999998654334444 4 56666
Q ss_pred EEEEcCCcEEEEeCCCCcEEEEecC---C---CcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecc---
Q 005352 411 ISGSIDGKVRIWAVLSCHVVDWVDI---R---QIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSK--- 481 (701)
Q Consensus 411 ~sgs~dg~v~iwd~~~~~~~~~~~~---~---~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~--- 481 (701)
+....++.|.++|..+.+.+..+.. . ..++.+.|. +|+..+..-.++.|.+.|..+++......+.-...
T Consensus 140 ~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~ 218 (262)
T 3nol_A 140 IMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAG 218 (262)
T ss_dssp EECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSC
T ss_pred EEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccc
Confidence 6655678899999999887755433 1 234557776 67555444468899999999988765443321110
Q ss_pred -cCCCCCCeeEEEEecCCCCEEEEEEC
Q 005352 482 -KKAPCKRITGFQFLPQDSSKVMVSCA 507 (701)
Q Consensus 482 -~~~~~~~i~~l~~~p~~~~~l~~~s~ 507 (701)
......-.++|++.|+ .+.|++.+.
T Consensus 219 ~~~~~~~vlNGIA~dp~-~~~lfVTGK 244 (262)
T 3nol_A 219 PLPSPIDVLNGIAWDKE-HHRLFVTGK 244 (262)
T ss_dssp SCCSSCCCEEEEEEETT-TTEEEEEET
T ss_pred cccCcCCceEEEEEcCC-CCEEEEECC
Confidence 1122346789999994 455555544
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.32 E-value=0.00022 Score=68.80 Aligned_cols=188 Identities=7% Similarity=-0.033 Sum_probs=124.2
Q ss_pred cCeEEEEEecCCeEEEEECC--CcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEE
Q 005352 355 GEILDLSWSKNNYLLSASID--KTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDW 432 (701)
Q Consensus 355 ~~I~~l~~s~~~~l~s~s~d--g~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~ 432 (701)
.....|.|+++..+.+.+.+ ..|+.+|+.+++.+...............+..+.+++..-.++.+.+||..+.+.+..
T Consensus 21 ~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~t 100 (243)
T 3mbr_X 21 AFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRAR 100 (243)
T ss_dssp CCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEE
T ss_pred cccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEE
Confidence 44678999873356666665 4899999999999998875544443333332445555556789999999999998877
Q ss_pred ecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEE
Q 005352 433 VDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVR 512 (701)
Q Consensus 433 ~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~ 512 (701)
+.....-..+ .++++.|+++..++.|.++|..+.+.......... ......++.+.+. ++..++..-.+..|.
T Consensus 101 i~~~~~Gwgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~---g~~~~~lNeLe~~--~G~lyanvw~s~~I~ 173 (243)
T 3mbr_X 101 FRYPGEGWAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAG---GRPLDNLNELEWV--NGELLANVWLTSRIA 173 (243)
T ss_dssp EECSSCCCEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEET---TEECCCEEEEEEE--TTEEEEEETTTTEEE
T ss_pred EeCCCCceEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccC---CcccccceeeEEe--CCEEEEEECCCCeEE
Confidence 7655443344 46788888888899999999998776544332221 1122345566665 355554444678899
Q ss_pred EEeCCcccee--eecc-----------cCCCCeEEEEEecCCCEEEEEeC
Q 005352 513 ILQGPNVIGK--YKGL-----------RRSGNQLSACFTSDGKHIVSAGE 549 (701)
Q Consensus 513 iwd~~~~~~~--~~~~-----------~~~~~v~~l~~s~dg~~l~sgs~ 549 (701)
+.|..+.... +... ....-.+.++++|+++.|+..+.
T Consensus 174 vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 174 RIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred EEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 9998754322 2211 12235689999998777766653
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.31 E-value=9e-05 Score=72.22 Aligned_cols=184 Identities=8% Similarity=0.011 Sum_probs=123.7
Q ss_pred cCeEEEEEecCCeEEEEECCCcEEEEECCCCeeeeeecCCCCeEE--EEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEE
Q 005352 355 GEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTC--VHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDW 432 (701)
Q Consensus 355 ~~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~--l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~ 432 (701)
.....|.|+.+.++.+.+.+|.|+++|+.+++.+..+ ....... +++. .+.+++..-.++.+.+||..+.+.+..
T Consensus 55 ~ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~~t 131 (268)
T 3nok_A 55 AFTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRERT 131 (268)
T ss_dssp CCEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEEEE
T ss_pred cccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEEEE
Confidence 3457888874337778888899999999999988877 4444433 5553 455666666789999999999999877
Q ss_pred ecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEE
Q 005352 433 VDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVR 512 (701)
Q Consensus 433 ~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~ 512 (701)
+.....-..++ ++++.|+++..++.|.++|..+.+......... .......++.+.|. ++.+++..-.++.|.
T Consensus 132 i~~~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~---~g~~v~~lNeLe~~--dG~lyanvw~s~~I~ 204 (268)
T 3nok_A 132 TRYSGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKL---RGQPVELINELECA--NGVIYANIWHSSDVL 204 (268)
T ss_dssp EECSSCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEE---TTEECCCEEEEEEE--TTEEEEEETTCSEEE
T ss_pred EeCCCceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCC---CCcccccccccEEe--CCEEEEEECCCCeEE
Confidence 66544433444 678889888889999999999877654433222 11122345667776 455554444688999
Q ss_pred EEeCCccce--eeecc-----------cCCCCeEEEEEecCCCEEEEEe
Q 005352 513 ILQGPNVIG--KYKGL-----------RRSGNQLSACFTSDGKHIVSAG 548 (701)
Q Consensus 513 iwd~~~~~~--~~~~~-----------~~~~~v~~l~~s~dg~~l~sgs 548 (701)
+.|..+... .+... ....-.+.++++|+++.|+..+
T Consensus 205 vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 205 EIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred EEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 999875432 22211 1224678999999776555544
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=0.0011 Score=76.88 Aligned_cols=199 Identities=13% Similarity=0.086 Sum_probs=130.6
Q ss_pred ccCeEEEEEecCCeEEEEECCCcEEEEECCCCeeeeeec---------CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeC
Q 005352 354 SGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP---------HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAV 424 (701)
Q Consensus 354 ~~~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~---------h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~ 424 (701)
...|.++...+++.|..|+.++-|..|+..+++...... ....|.++...+ ++++|..|+.++-|.+||.
T Consensus 356 ~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~~lWigt~~~Gl~~~d~ 434 (795)
T 4a2l_A 356 DNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDE-KKSLVYIGTHAGGLSILHR 434 (795)
T ss_dssp CSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEET-TTTEEEEEETTTEEEEEET
T ss_pred CCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcC-CCCEEEEEeCcCceeEEeC
Confidence 356899988888888889998889999988776543321 135689998887 7775677777778999999
Q ss_pred CCCcEEEEec-----CCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCC
Q 005352 425 LSCHVVDWVD-----IRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDS 499 (701)
Q Consensus 425 ~~~~~~~~~~-----~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~ 499 (701)
.+++...... ....|.++...++|+. .+|+. +-+.+|+..+++....... ..........|.++...+ ++
T Consensus 435 ~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~l-wigt~-~Gl~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~i~~d~-~g 509 (795)
T 4a2l_A 435 NSGQVENFNQRNSQLVNENVYAILPDGEGNL-WLGTL-SALVRFNPEQRSFTTIEKE--KDGTPVVSKQITTLFRDS-HK 509 (795)
T ss_dssp TTCCEEEECTTTSCCSCSCEEEEEECSSSCE-EEEES-SCEEEEETTTTEEEECCBC--TTCCBCCCCCEEEEEECT-TC
T ss_pred CCCcEEEeecCCCCcCCCeeEEEEECCCCCE-EEEec-CceeEEeCCCCeEEEcccc--ccccccCCceEEEEEECC-CC
Confidence 8887665432 2356899998888764 44555 4588899887654321100 000112235688887766 34
Q ss_pred CEEEEEECCCcEEEEeCCccceeeec-----ccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 500 SKVMVSCADSQVRILQGPNVIGKYKG-----LRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 500 ~~l~~~s~dg~I~iwd~~~~~~~~~~-----~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
. +.+|+. +-|..||..+....+.. ......|.++..+++|.+.++.. . -|..||..+.+
T Consensus 510 ~-lWigt~-~Gl~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~~~~~ 573 (795)
T 4a2l_A 510 R-LWIGGE-EGLSVFKQEGLDIQKASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNEKDKQ 573 (795)
T ss_dssp C-EEEEES-SCEEEEEEETTEEEECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEETTTTE
T ss_pred C-EEEEeC-CceEEEeCCCCeEEEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-CceeECCCCCc
Confidence 4 455555 56888886543222211 11345789999999998666554 3 58888876543
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=0.0011 Score=77.18 Aligned_cols=198 Identities=9% Similarity=0.060 Sum_probs=132.4
Q ss_pred ccCeEEEEEecCCeEEEEECCCcEEEEECCCCeeeeeec-------CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCC
Q 005352 354 SGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP-------HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS 426 (701)
Q Consensus 354 ~~~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~-------h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~ 426 (701)
...|.++...++|.|..|+.++-|..|+..+........ ....|.++...+ +++ |..|+.++-|..||..+
T Consensus 309 ~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~-~g~-lWiGt~~~Gl~~~~~~~ 386 (795)
T 4a2l_A 309 QRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDK-DKN-LWIGTNDGGLNLYNPIT 386 (795)
T ss_dssp SSCEEEEEECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECT-TSC-EEEEESSSCEEEECTTT
T ss_pred CCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECC-CCC-EEEEECCCCeEEEcCCC
Confidence 357999998888888889988889999876554322111 245699998876 555 55577777899999988
Q ss_pred CcEEEEec---------CCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecC
Q 005352 427 CHVVDWVD---------IRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQ 497 (701)
Q Consensus 427 ~~~~~~~~---------~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~ 497 (701)
++...... ....|.+++..++|+.|.+|+.++-|..||..+++...-. ..........|.++...+
T Consensus 387 ~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~----~~~~~l~~~~v~~i~~d~- 461 (795)
T 4a2l_A 387 QRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFN----QRNSQLVNENVYAILPDG- 461 (795)
T ss_dssp CCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEEC----TTTSCCSCSCEEEEEECS-
T ss_pred CcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEee----cCCCCcCCCeeEEEEECC-
Confidence 76654431 1356899998888875788888778999998876543211 001112345688887766
Q ss_pred CCCEEEEEECCCcEEEEeCCccceeeec------ccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 498 DSSKVMVSCADSQVRILQGPNVIGKYKG------LRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 498 ~~~~l~~~s~dg~I~iwd~~~~~~~~~~------~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
++ .|.+|+. +-|.+||..+....... ......|.++...++|.+.+... +-|+.|+..++.
T Consensus 462 ~g-~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~ 528 (795)
T 4a2l_A 462 EG-NLWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGLD 528 (795)
T ss_dssp SS-CEEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETTE
T ss_pred CC-CEEEEec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCCe
Confidence 34 4555555 56888987653222111 11236789999999998666554 458888876553
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.30 E-value=0.00022 Score=69.77 Aligned_cols=207 Identities=12% Similarity=0.174 Sum_probs=136.6
Q ss_pred EEcCCccCeEEEEEecCC--eEEEEECCCcEEEEECCCCeeeeeecC--CCCeEEEEEeeCCCCEEEEEEcCCcEEEEeC
Q 005352 349 EFHGHSGEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFPH--SNYVTCVHFNPVDDNYFISGSIDGKVRIWAV 424 (701)
Q Consensus 349 ~~~~h~~~I~~l~~s~~~--~l~s~s~dg~I~iWd~~~~~~~~~~~h--~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~ 424 (701)
.+.+-...+..|+|.|++ ++++...++.|...|.. ++.++.+.. ....-.|++.+ ++.++++.-.++.+.++++
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~-~g~~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIG-DNQFVISDERDYAIYVISL 98 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECS-TTEEEEEETTTTEEEEEEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeC-CCEEEEEECCCCcEEEEEc
Confidence 345566789999999976 55557778899999998 888877753 35688889987 7766666556778999987
Q ss_pred CCCcE---EEEe-------cCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEee--cccCCCCCCeeEE
Q 005352 425 LSCHV---VDWV-------DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVH--SKKKAPCKRITGF 492 (701)
Q Consensus 425 ~~~~~---~~~~-------~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~--~~~~~~~~~i~~l 492 (701)
..... +... ..+.....++|+|.++.|+++.......+|.+..........+... .........+.++
T Consensus 99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l 178 (255)
T 3qqz_A 99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA 178 (255)
T ss_dssp CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence 65432 2222 1233468999999998888888776666776652100000111000 0011234568999
Q ss_pred EEecCCCCEEEEEECCCcEEEEeCCccc-eeeeccc-------CCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 005352 493 QFLPQDSSKVMVSCADSQVRILQGPNVI-GKYKGLR-------RSGNQLSACFTSDGKHIVSAGEDSNVYMWNC 558 (701)
Q Consensus 493 ~~~p~~~~~l~~~s~dg~I~iwd~~~~~-~~~~~~~-------~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~ 558 (701)
++.|..+.+++.+.....|.++|..... ..+.... .....-.++|.++|++.++ ++.+.++.+.-
T Consensus 179 ~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~ 251 (255)
T 3qqz_A 179 EFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFTP 251 (255)
T ss_dssp EEETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC
T ss_pred EEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEEe
Confidence 9999877788888788889999977432 2222221 1135689999999984444 77777777753
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.30 E-value=0.00021 Score=69.04 Aligned_cols=189 Identities=8% Similarity=0.035 Sum_probs=121.9
Q ss_pred CcEEEEEEccCCCEEEEEeCCC--cEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecC
Q 005352 251 GSILTMKFSPDGQYLASAGDDG--VVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTS 328 (701)
Q Consensus 251 ~~I~~l~fspdg~~Lasgs~Dg--~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (701)
.-...+.|++ +.+..+.|.+| .|+++|+.+++.+.++.++...
T Consensus 21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~---------------------------------- 65 (243)
T 3mbr_X 21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPY---------------------------------- 65 (243)
T ss_dssp CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTC----------------------------------
T ss_pred cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCc----------------------------------
Confidence 3467899986 66677777754 8999999999876655432210
Q ss_pred CccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCCeEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCC
Q 005352 329 ESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDN 408 (701)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~ 408 (701)
.--.++...+..+...-.++.+.+||..+.+.+.++.....-..++ + ++.
T Consensus 66 ---------------------------fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~Gwglt--~-dg~ 115 (243)
T 3mbr_X 66 ---------------------------FGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRARFRYPGEGWALT--S-DDS 115 (243)
T ss_dssp ---------------------------CEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEECSSCCCEEE--E-CSS
T ss_pred ---------------------------ceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCceEEe--e-CCC
Confidence 0112333322244445578999999999999999998655445555 4 555
Q ss_pred EEEEEEcCCcEEEEeCCCCcEEEEecCC------CcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeec-c
Q 005352 409 YFISGSIDGKVRIWAVLSCHVVDWVDIR------QIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHS-K 481 (701)
Q Consensus 409 ~l~sgs~dg~v~iwd~~~~~~~~~~~~~------~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~-~ 481 (701)
.|+.+..++.|.++|..+.+.+..+... ..++.+.+. +|+.++..-.+..|.+.|..+++......+.... .
T Consensus 116 ~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~ 194 (243)
T 3mbr_X 116 HLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPD 194 (243)
T ss_dssp CEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTT
T ss_pred EEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccc
Confidence 5666566889999999998877554332 245566665 6655544446789999999998876544332111 0
Q ss_pred c----CCCCCCeeEEEEecCCCCEEEEE
Q 005352 482 K----KAPCKRITGFQFLPQDSSKVMVS 505 (701)
Q Consensus 482 ~----~~~~~~i~~l~~~p~~~~~l~~~ 505 (701)
. .....-.++|++.|....++++|
T Consensus 195 ~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 195 ADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp TTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred cccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 1 12334678999999544444444
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.28 E-value=0.00084 Score=68.10 Aligned_cols=185 Identities=12% Similarity=0.063 Sum_probs=109.0
Q ss_pred CeEEEEEecCC-eEEEEEC-CC-cEEEEECCCCeeeeeec--CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCc--
Q 005352 356 EILDLSWSKNN-YLLSASI-DK-TVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH-- 428 (701)
Q Consensus 356 ~I~~l~~s~~~-~l~s~s~-dg-~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~-- 428 (701)
....+++.+++ ++++... ++ .|..+|..+++...... .......++..+ ++..+++-..++.|.++|..+++
T Consensus 73 ~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~~~~~ 151 (306)
T 2p4o_A 73 KVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGS 151 (306)
T ss_dssp EEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEE
T ss_pred CceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccC-CCcEEEEECCCCeEEEEeCCCCcEe
Confidence 46788999998 4443333 22 46677777776544332 223345555554 44445544458889999987653
Q ss_pred EEEEe---------cCCCcEEEEEEeeCCCeEEEEe-cCCcEEEEECCC-CeeeeeeeEEeecccCCCCCCeeEEEEecC
Q 005352 429 VVDWV---------DIRQIVTAVCYRPDGQGGIVGS-MMGDCRFYNVSD-NHLELDAEICVHSKKKAPCKRITGFQFLPQ 497 (701)
Q Consensus 429 ~~~~~---------~~~~~i~~i~~sp~g~~l~~gs-~dg~v~i~d~~~-~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~ 497 (701)
+.... ..-.....+ +|+++.|+++. ..+.|..|++.. +.... ...... ......+++.+
T Consensus 152 v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~-~~~~~~------~~~P~gi~vd~- 221 (306)
T 2p4o_A 152 IWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGE-PEIFVE------QTNIDDFAFDV- 221 (306)
T ss_dssp EEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCC-CEEEEE------SCCCSSEEEBT-
T ss_pred EEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCc-cEEEec------cCCCCCeEECC-
Confidence 21110 011234555 88887766654 567899999875 22211 111110 12356788888
Q ss_pred CCCEEEEEECCCcEEEEeCCccceee-ecccCCCCeEEEEEe---cCCCEEEEEeCCC
Q 005352 498 DSSKVMVSCADSQVRILQGPNVIGKY-KGLRRSGNQLSACFT---SDGKHIVSAGEDS 551 (701)
Q Consensus 498 ~~~~l~~~s~dg~I~iwd~~~~~~~~-~~~~~~~~v~~l~~s---~dg~~l~sgs~Dg 551 (701)
++.++++....+.|.+++........ .........++++|. |+++.|+.++..+
T Consensus 222 dG~l~va~~~~~~V~~~~~~G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 222 EGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp TCCEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred CCCEEEEeCCCCeEEEECCCCCEEEEeecccccCCceEEEEecccCCCCEEEEECCCC
Confidence 67777777778899999975322212 222234668999998 8888777666543
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.20 E-value=0.0041 Score=71.99 Aligned_cols=195 Identities=10% Similarity=0.038 Sum_probs=125.9
Q ss_pred ccCeEEEEEecCCeEEEEECCCcEEEEECCCCeeeeee-------c---CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEe
Q 005352 354 SGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVF-------P---HSNYVTCVHFNPVDDNYFISGSIDGKVRIWA 423 (701)
Q Consensus 354 ~~~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~-------~---h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd 423 (701)
...|.+|...+++.|..|+.++-|..++..+....... . ....|.++...+ +++ |..|+.++-|..||
T Consensus 312 ~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~-lWigt~~~Gl~~~~ 389 (781)
T 3v9f_A 312 NASARYIFQDSFNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDG-QGK-LWIGTDGGGINVFE 389 (781)
T ss_dssp SSCEEEEEECSSCCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECT-TSC-EEEEEBSSCEEEEE
T ss_pred CCeEEEEEEeCCCCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcC-CCC-EEEEeCCCcEEEEE
Confidence 45788998888888888888888999998765433221 1 235689998876 555 55666666799999
Q ss_pred CCCCcEEEEe----cCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCC
Q 005352 424 VLSCHVVDWV----DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDS 499 (701)
Q Consensus 424 ~~~~~~~~~~----~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~ 499 (701)
..++...... .....|.++...++|. |.+|+.++-+..|+..+++.... .........|.++...+ .
T Consensus 390 ~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~------~~~~~~~~~v~~i~~d~--~ 460 (781)
T 3v9f_A 390 NGKRVAIYNKENRELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTRLKKFQII------ELEKNELLDVRVFYEDK--N 460 (781)
T ss_dssp TTEEEEECC-----CCCSBEEEEEECTTSC-EEEEETTEEEEEECSSSCEEEEC------CSTTTCCCCEEEEEECT--T
T ss_pred CCCCeEEEccCCCCCCCcceEEEEECCCCC-EEEEeccCCEEEEcCCCCcEEEe------ccCCCCCCeEEEEEECC--C
Confidence 8765544321 1235688888887775 55677767789999877654321 00012345677777765 3
Q ss_pred CEEEEEECCCcEEEEeCCccce-eeeccc----CCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 005352 500 SKVMVSCADSQVRILQGPNVIG-KYKGLR----RSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGH 561 (701)
Q Consensus 500 ~~l~~~s~dg~I~iwd~~~~~~-~~~~~~----~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~ 561 (701)
..|.+|+. +-|..+|..+... .+.... ....|.++...++|.+.+.. .++-|+.|+..++
T Consensus 461 g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt-~~~Gl~~~~~~~~ 525 (781)
T 3v9f_A 461 KKIWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGT-FGGGVGIYTPDMQ 525 (781)
T ss_dssp SEEEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEE-SSSCEEEECTTCC
T ss_pred CCEEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEE-cCCCEEEEeCCCC
Confidence 45666666 5688898764322 121111 14678999999998866554 4344777886554
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.10 E-value=0.0001 Score=83.75 Aligned_cols=193 Identities=11% Similarity=0.047 Sum_probs=123.0
Q ss_pred CCeEEEEECCCcEEEEECCCCeeeeeecCCCC-----------e-EEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEE
Q 005352 365 NNYLLSASIDKTVRLWRVGNDHCLRVFPHSNY-----------V-TCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDW 432 (701)
Q Consensus 365 ~~~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~-----------V-~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~ 432 (701)
++.++.++.++.|..+|..+++.+..+..... + ..+++ .+..++.++.|+.|..+|..+++.+-.
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~v~~~dg~l~alD~~tG~~~W~ 142 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL---WGDKVYVGTLDGRLIALDAKTGKAIWS 142 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE---EBTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE---ECCEEEEEcCCCEEEEEECCCCCEeee
Confidence 55778888899999999999999988863221 1 12233 345778888899999999999988743
Q ss_pred ecCC-----CcEEE-EEEeeCCCeEEEEec------CCcEEEEECCCCeeeeeeeEEeecccC-----------------
Q 005352 433 VDIR-----QIVTA-VCYRPDGQGGIVGSM------MGDCRFYNVSDNHLELDAEICVHSKKK----------------- 483 (701)
Q Consensus 433 ~~~~-----~~i~~-i~~sp~g~~l~~gs~------dg~v~i~d~~~~~~~~~~~~~~~~~~~----------------- 483 (701)
.... ..+.+ ..+ .+..++++.. +|.|..||..+++..............
T Consensus 143 ~~~~~~~~~~~~~~~P~v--~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~ 220 (668)
T 1kv9_A 143 QQTTDPAKPYSITGAPRV--VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGD 220 (668)
T ss_dssp EECSCTTSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSS
T ss_pred eccCCCCCcceecCCCEE--ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCcc
Confidence 3321 11111 111 1345666644 589999999999877654321100000
Q ss_pred ------CCCCCeeEEEEecCCCCEEEEEECCC-------------------cEEEEeCCccceeeeccc--CC-------
Q 005352 484 ------APCKRITGFQFLPQDSSKVMVSCADS-------------------QVRILQGPNVIGKYKGLR--RS------- 529 (701)
Q Consensus 484 ------~~~~~i~~l~~~p~~~~~l~~~s~dg-------------------~I~iwd~~~~~~~~~~~~--~~------- 529 (701)
........+++.| ...++++++.++ .|.-+|..+......... |.
T Consensus 221 ~~w~~~~gg~~w~~~a~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~ 299 (668)
T 1kv9_A 221 QYWKLGGGGTVWDSMAYDP-ELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTAT 299 (668)
T ss_dssp CHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCC
T ss_pred ceeeeCCCCccccceEEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCC
Confidence 0011123467777 556777777665 388899887665554322 21
Q ss_pred CCeEEEEEecCCC---EEEEEeCCCcEEEEeCCCCCC
Q 005352 530 GNQLSACFTSDGK---HIVSAGEDSNVYMWNCIGHEE 563 (701)
Q Consensus 530 ~~v~~l~~s~dg~---~l~sgs~Dg~I~iWd~~~~~~ 563 (701)
.+.....+..+|+ .|+.++.+|.++++|..+++.
T Consensus 300 ~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~ 336 (668)
T 1kv9_A 300 QQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKL 336 (668)
T ss_dssp SCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred CCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCE
Confidence 2333344445775 789999999999999999874
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.07 E-value=0.00015 Score=82.28 Aligned_cols=187 Identities=9% Similarity=0.076 Sum_probs=119.1
Q ss_pred CCcEEEEECCCCeeeeeecCC--C------------------------------CeEEEEEeeCCCCEEEEEEcCC----
Q 005352 374 DKTVRLWRVGNDHCLRVFPHS--N------------------------------YVTCVHFNPVDDNYFISGSIDG---- 417 (701)
Q Consensus 374 dg~I~iWd~~~~~~~~~~~h~--~------------------------------~V~~l~f~p~~~~~l~sgs~dg---- 417 (701)
++.|..+|..+++.+..+... . ....+++.| ...+++.+..++
T Consensus 177 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~-~~~~vy~~~~~g~~w~ 255 (668)
T 1kv9_A 177 RGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDP-ELDLLYVGTGNGSPWN 255 (668)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSC
T ss_pred CCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcC-CCCEEEEeCCCCCccc
Confidence 588999999999988877521 0 012467888 677888887665
Q ss_pred ---------------cEEEEeCCCCcEEEEecC---C-------CcEEEEEEeeCCC---eEEEEecCCcEEEEECCCCe
Q 005352 418 ---------------KVRIWAVLSCHVVDWVDI---R-------QIVTAVCYRPDGQ---GGIVGSMMGDCRFYNVSDNH 469 (701)
Q Consensus 418 ---------------~v~iwd~~~~~~~~~~~~---~-------~~i~~i~~sp~g~---~l~~gs~dg~v~i~d~~~~~ 469 (701)
.|..+|..+++.+-.... . .++....+..+|+ .+++++.+|.++++|..+++
T Consensus 256 ~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 335 (668)
T 1kv9_A 256 REVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGK 335 (668)
T ss_dssp HHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred cCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCC
Confidence 399999999988743321 1 2333334445775 68899999999999999998
Q ss_pred eeeeeeEEeec-------c--------cCC-C------------CCCeeEEEEecCCCCEEEEEE---------------
Q 005352 470 LELDAEICVHS-------K--------KKA-P------------CKRITGFQFLPQDSSKVMVSC--------------- 506 (701)
Q Consensus 470 ~~~~~~~~~~~-------~--------~~~-~------------~~~i~~l~~~p~~~~~l~~~s--------------- 506 (701)
+.....+.... . ... . ...-..++++|+ ..++++..
T Consensus 336 ~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~-~g~~yv~~~~~~~~~~~~~~~~~ 414 (668)
T 1kv9_A 336 LISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPG-TGLVYIPYQEVPGVYRNEGKDFV 414 (668)
T ss_dssp EEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETT-TTEEEEEEEECCEEECCCGGGCC
T ss_pred EeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCC-CCEEEEeccccceEeeeeccccc
Confidence 76332211000 0 000 0 000112567773 33433311
Q ss_pred ---------------------CCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCC
Q 005352 507 ---------------------ADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEE 563 (701)
Q Consensus 507 ---------------------~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~ 563 (701)
.++.|.-||..+.....+... ........+...+.+|+.++.||.|+.||..+++.
T Consensus 415 ~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~-~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~ 491 (668)
T 1kv9_A 415 TRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPY-PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEA 491 (668)
T ss_dssp CCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred cccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccC-CCCCcCceeEeCCCEEEEECCcccchhhhhhcChh
Confidence 237789999887766554432 22333344556788999999999999999999874
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=0.0004 Score=77.14 Aligned_cols=195 Identities=10% Similarity=-0.032 Sum_probs=117.3
Q ss_pred CCeEEEEEC------CCcEEEEECCCCeeeeeecCCCCe---------------------------------------EE
Q 005352 365 NNYLLSASI------DKTVRLWRVGNDHCLRVFPHSNYV---------------------------------------TC 399 (701)
Q Consensus 365 ~~~l~s~s~------dg~I~iWd~~~~~~~~~~~h~~~V---------------------------------------~~ 399 (701)
++.++.++. ++.|..+|..+++.+..+...... ..
T Consensus 160 ~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~ 239 (571)
T 2ad6_A 160 KDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGW 239 (571)
T ss_dssp TTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSC
T ss_pred CCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeee
Confidence 455555544 789999999999988877532211 13
Q ss_pred EEEeeCCCCEEEEEEcC----------------CcEEEEeCCCCcEEEEecCC----------CcEEEEEEeeCCC---e
Q 005352 400 VHFNPVDDNYFISGSID----------------GKVRIWAVLSCHVVDWVDIR----------QIVTAVCYRPDGQ---G 450 (701)
Q Consensus 400 l~f~p~~~~~l~sgs~d----------------g~v~iwd~~~~~~~~~~~~~----------~~i~~i~~sp~g~---~ 450 (701)
+++.+ ....++.+..+ +.|..+|..+++.+-..... ....-+...++|+ .
T Consensus 240 ~a~d~-~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~ 318 (571)
T 2ad6_A 240 YAYDP-KLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPL 318 (571)
T ss_dssp CEEET-TTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEE
T ss_pred EEEcC-CCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEE
Confidence 56666 55566665532 35999999999887333211 1111223335774 5
Q ss_pred EEEEecCCcEEEEECCCCeeeeeeeEEeecc----cC-CCCC--------------------------CeeEEEEecCCC
Q 005352 451 GIVGSMMGDCRFYNVSDNHLELDAEICVHSK----KK-APCK--------------------------RITGFQFLPQDS 499 (701)
Q Consensus 451 l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~----~~-~~~~--------------------------~i~~l~~~p~~~ 499 (701)
+++++.+|.+.++|..+++......+..... .. .... .-..++++|+ .
T Consensus 319 v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~-~ 397 (571)
T 2ad6_A 319 LSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPE-S 397 (571)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETT-T
T ss_pred EEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCC-C
Confidence 7788999999999999988765432211000 00 0000 0124567773 4
Q ss_pred CEEEEEE-------------------------------------CCCcEEEEeCCccceeeecccCCCCeEEEEEecCCC
Q 005352 500 SKVMVSC-------------------------------------ADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGK 542 (701)
Q Consensus 500 ~~l~~~s-------------------------------------~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~ 542 (701)
.++++.. .++.|..||..+.....+... ...+....+...+.
T Consensus 398 g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~-~~~~~~~~~~t~gg 476 (571)
T 2ad6_A 398 RTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWE-KFAAWGGTLYTKGG 476 (571)
T ss_dssp TEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEE-SSCCCSBCEEETTT
T ss_pred CEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecC-CCCccceeEEECCC
Confidence 4554443 347888899876655544321 12222233344567
Q ss_pred EEEEEeCCCcEEEEeCCCCC
Q 005352 543 HIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 543 ~l~sgs~Dg~I~iWd~~~~~ 562 (701)
.++.++.||.|+.||..+++
T Consensus 477 ~v~~g~~dg~l~a~D~~tG~ 496 (571)
T 2ad6_A 477 LVWYATLDGYLKALDNKDGK 496 (571)
T ss_dssp EEEEECTTSEEEEEETTTCC
T ss_pred EEEEEcCCCeEEEEECCCCC
Confidence 78889999999999999987
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.06 E-value=0.00085 Score=68.06 Aligned_cols=201 Identities=9% Similarity=-0.028 Sum_probs=121.6
Q ss_pred cCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCC--cEEEEeCCCCcEEE
Q 005352 355 GEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDG--KVRIWAVLSCHVVD 431 (701)
Q Consensus 355 ~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg--~v~iwd~~~~~~~~ 431 (701)
.....++|.+++ .+++-..++.|..||.... ....+.....+..+++.+ +++++++..... .|..+|..+++...
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~~~~~p~gia~~~-dG~l~vad~~~~~~~v~~~d~~~g~~~~ 109 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHATVEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTVET 109 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEECSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEeCCCCceeEEEcC-CCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence 457789999988 5555557889999998754 444445556789999999 888766654432 47777877877654
Q ss_pred EecC--CCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEE-ee-cccCCCCCCeeEEEEecCCCCEEEEEEC
Q 005352 432 WVDI--RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEIC-VH-SKKKAPCKRITGFQFLPQDSSKVMVSCA 507 (701)
Q Consensus 432 ~~~~--~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~-~~-~~~~~~~~~i~~l~~~p~~~~~l~~~s~ 507 (701)
.... ......++..+++..+++-..++.|..+|............. .. ............+ +|+++.++++-..
T Consensus 110 ~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~ 187 (306)
T 2p4o_A 110 LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTE 187 (306)
T ss_dssp EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETT
T ss_pred EEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCC
Confidence 4332 233455665555544444446889999998764321110000 00 0011122344555 6743345555566
Q ss_pred CCcEEEEeCCc-cc-eeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 005352 508 DSQVRILQGPN-VI-GKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCI 559 (701)
Q Consensus 508 dg~I~iwd~~~-~~-~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~ 559 (701)
.+.|..++... .. ..............++++++|+++++....+.|.+++..
T Consensus 188 ~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~ 241 (306)
T 2p4o_A 188 KMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD 241 (306)
T ss_dssp TTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred CCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEEeCCCCeEEEECCC
Confidence 88999999753 11 000111111345668899999887777778899999864
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.03 E-value=0.001 Score=71.01 Aligned_cols=205 Identities=10% Similarity=0.090 Sum_probs=114.8
Q ss_pred cCeEEEEEecCCeEEEEECCC----c-EEEEECCCCee-eeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCc
Q 005352 355 GEILDLSWSKNNYLLSASIDK----T-VRLWRVGNDHC-LRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH 428 (701)
Q Consensus 355 ~~I~~l~~s~~~~l~s~s~dg----~-I~iWd~~~~~~-~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~ 428 (701)
.....|++++++.|+.+...+ . +...+...+.. ...+..-.....++++|.++.++++-..++.|+.+|..++.
T Consensus 182 ~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~ 261 (433)
T 4hw6_A 182 GQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGT 261 (433)
T ss_dssp SCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCC
T ss_pred CCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCe
Confidence 457788999988444443321 1 33333221110 01222234456788888556666665567889999998776
Q ss_pred E-EEEec--CCCcEEEEEEeeCCCeEEEE-ecCCcEEEEECCC--CeeeeeeeEEee-cc--------cCCCCCCeeEEE
Q 005352 429 V-VDWVD--IRQIVTAVCYRPDGQGGIVG-SMMGDCRFYNVSD--NHLELDAEICVH-SK--------KKAPCKRITGFQ 493 (701)
Q Consensus 429 ~-~~~~~--~~~~i~~i~~sp~g~~l~~g-s~dg~v~i~d~~~--~~~~~~~~~~~~-~~--------~~~~~~~i~~l~ 493 (701)
. ..... .......++|+|+++.|+++ ...+.|+.+++.. +.+.....+.-. .. ..........++
T Consensus 262 ~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~gia 341 (433)
T 4hw6_A 262 LTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGI 341 (433)
T ss_dssp EEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEE
T ss_pred EEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEE
Confidence 6 22222 22234579999999965555 4567899988763 221100011100 00 011234467788
Q ss_pred Ee--------cCCCCEEEEEECCCcEEEEeCCccceeeeccc----------------CCCCeEEEEEe-cCCCEEEEEe
Q 005352 494 FL--------PQDSSKVMVSCADSQVRILQGPNVIGKYKGLR----------------RSGNQLSACFT-SDGKHIVSAG 548 (701)
Q Consensus 494 ~~--------p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~----------------~~~~v~~l~~s-~dg~~l~sgs 548 (701)
+. ..++.++++-...+.|+.++.......+.+.. .-.....++++ ++|.++++=.
T Consensus 342 v~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~ 421 (433)
T 4hw6_A 342 FVKNEAYAGEEDEYDFYFCDRDSHTVRVLTPEGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDC 421 (433)
T ss_dssp EEECGGGTTSSCCEEEEEEETTTTEEEEECTTSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEG
T ss_pred EEccccccccCCCCcEEEEECCCCEEEEECCCCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeC
Confidence 82 22556666666688999998643232222211 12347789999 6666666666
Q ss_pred CCCcEEEEeCC
Q 005352 549 EDSNVYMWNCI 559 (701)
Q Consensus 549 ~Dg~I~iWd~~ 559 (701)
.+..|+.++++
T Consensus 422 ~n~rIr~i~~e 432 (433)
T 4hw6_A 422 DNHRVRKIAPE 432 (433)
T ss_dssp GGTEEEEEEEC
T ss_pred CCCEEEEEecC
Confidence 77788887754
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.01 E-value=0.0048 Score=71.39 Aligned_cols=198 Identities=10% Similarity=0.033 Sum_probs=127.2
Q ss_pred cCeEEEEEecCCeEEEEECCCcEEEEECCCCeeeeee----cCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEE
Q 005352 355 GEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVF----PHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV 430 (701)
Q Consensus 355 ~~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~----~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~ 430 (701)
..|.++...+++.|..|+.++-|..||..++...... .....|.++...+ ++. |..|+.++-|..+|..+++..
T Consensus 363 ~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~-lWigt~~~Gl~~~~~~~~~~~ 440 (781)
T 3v9f_A 363 KVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDS-EGN-LWFGTYLGNISYYNTRLKKFQ 440 (781)
T ss_dssp SCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECT-TSC-EEEEETTEEEEEECSSSCEEE
T ss_pred cceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECC-CCC-EEEEeccCCEEEEcCCCCcEE
Confidence 5688998888888888887778999998765433221 1346788988876 555 455676677999998887665
Q ss_pred EEec---CCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEEC
Q 005352 431 DWVD---IRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCA 507 (701)
Q Consensus 431 ~~~~---~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~ 507 (701)
.... ....|.++...++|. |.+|+. +-+..|+..+++..... ...........|.++...+ + ..|.+|+.
T Consensus 441 ~~~~~~~~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~---~~~~~~~~~~~i~~i~~d~-~-g~lWigt~ 513 (781)
T 3v9f_A 441 IIELEKNELLDVRVFYEDKNKK-IWIGTH-AGVFVIDLASKKVIHHY---DTSNSQLLENFVRSIAQDS-E-GRFWIGTF 513 (781)
T ss_dssp ECCSTTTCCCCEEEEEECTTSE-EEEEET-TEEEEEESSSSSCCEEE---CTTTSSCSCSCEEEEEECT-T-CCEEEEES
T ss_pred EeccCCCCCCeEEEEEECCCCC-EEEEEC-CceEEEeCCCCeEEecc---cCcccccccceeEEEEEcC-C-CCEEEEEc
Confidence 4432 245788888887775 555665 56888998776543211 0000111235688887766 3 44666666
Q ss_pred CCcEEEEeCCccce-eeecc--cCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 508 DSQVRILQGPNVIG-KYKGL--RRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 508 dg~I~iwd~~~~~~-~~~~~--~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
++-|..||...... .+... .....|.++...++|.+.++.. +|.|..||..+++
T Consensus 514 ~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~ 570 (781)
T 3v9f_A 514 GGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARNFD 570 (781)
T ss_dssp SSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTTCC
T ss_pred CCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCCCc
Confidence 55577788754322 22111 1345788999989988666554 6765888877654
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.99 E-value=0.0054 Score=63.42 Aligned_cols=199 Identities=7% Similarity=-0.052 Sum_probs=127.8
Q ss_pred cCeEEEEEecCC-eE-EEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEE
Q 005352 355 GEILDLSWSKNN-YL-LSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD 431 (701)
Q Consensus 355 ~~I~~l~~s~~~-~l-~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~ 431 (701)
..+..++|.+.+ .| ++-...+.|..+++........+. .......+++.+..++++++-...+.|.+.++.......
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~ 152 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV 152 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEE
Confidence 347889999754 44 444567889999988765444433 234567899987455666666667889999987654433
Q ss_pred Ee-cCCCcEEEEEEeeCCCeEEEEec-C-CcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECC
Q 005352 432 WV-DIRQIVTAVCYRPDGQGGIVGSM-M-GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD 508 (701)
Q Consensus 432 ~~-~~~~~i~~i~~sp~g~~l~~gs~-d-g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~d 508 (701)
.. ..-.....++++|.+..|+.... . +.|..+++........ .........++++.|.++.++++-...
T Consensus 153 l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~--------~~~~~~~PnGla~d~~~~~lY~aD~~~ 224 (349)
T 3v64_C 153 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRII--------ADTHLFWPNGLTIDYAGRRMYWVDAKH 224 (349)
T ss_dssp EECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEES--------CCSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred EEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEE--------EECCCCCcceEEEeCCCCEEEEEECCC
Confidence 33 23356889999996666655543 4 7788888875432210 111234578999998666666666667
Q ss_pred CcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 509 SQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 509 g~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
+.|..+|...................+++ ..+...++-...+.|..++..+++
T Consensus 225 ~~I~~~~~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~ 277 (349)
T 3v64_C 225 HVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGK 277 (349)
T ss_dssp TEEEEEETTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCC
T ss_pred CEEEEEeCCCCceEEEEeCCCCCceEEEE-ECCEEEEecCCCCeEEEEEccCCC
Confidence 88999987643222111123456678888 345555555667888888855554
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.99 E-value=0.0013 Score=70.18 Aligned_cols=204 Identities=9% Similarity=0.108 Sum_probs=113.7
Q ss_pred cCeEEEEEecCC-eEEEEECC-C----cEEEEECCCCeee--eeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCC
Q 005352 355 GEILDLSWSKNN-YLLSASID-K----TVRLWRVGNDHCL--RVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS 426 (701)
Q Consensus 355 ~~I~~l~~s~~~-~l~s~s~d-g----~I~iWd~~~~~~~--~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~ 426 (701)
.....|+|++++ +|+.+... + .+.+.+. .+... ..+........++++|.++.++++-..++.|..++...
T Consensus 179 ~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~ 257 (430)
T 3tc9_A 179 SKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTT 257 (430)
T ss_dssp SCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTT
T ss_pred CCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCC
Confidence 456789999988 56666542 1 2333332 22221 22222334567889985566666666778999999987
Q ss_pred CcEEEEec--CCCcEEEEEEeeCCCeEEEE-ecCCcEEEEECCC--CeeeeeeeEEee-ccc--------CCCCCCee-E
Q 005352 427 CHVVDWVD--IRQIVTAVCYRPDGQGGIVG-SMMGDCRFYNVSD--NHLELDAEICVH-SKK--------KAPCKRIT-G 491 (701)
Q Consensus 427 ~~~~~~~~--~~~~i~~i~~sp~g~~l~~g-s~dg~v~i~d~~~--~~~~~~~~~~~~-~~~--------~~~~~~i~-~ 491 (701)
+....... .......++|+|+|++|+++ ...+.|..++... +.+.....+.-. ... ........ .
T Consensus 258 ~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~g 337 (430)
T 3tc9_A 258 QETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQG 337 (430)
T ss_dssp TEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEE
T ss_pred CcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcce
Confidence 76533332 22457899999999955554 5678899987664 222111111100 000 00112233 4
Q ss_pred EEEec-------CCCCEEEEEECCCcEEEEeCCccceeeeccc----------------CCCCeEEEEEecC-CCEEEEE
Q 005352 492 FQFLP-------QDSSKVMVSCADSQVRILQGPNVIGKYKGLR----------------RSGNQLSACFTSD-GKHIVSA 547 (701)
Q Consensus 492 l~~~p-------~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~----------------~~~~v~~l~~s~d-g~~l~sg 547 (701)
+...+ .++.++++-...+.|+.++.......+.+.. .-.....++++|+ +.++++-
T Consensus 338 v~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD 417 (430)
T 3tc9_A 338 TFVKNPAYKGSSDEYDFYFCDRENHCIRILTPQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGD 417 (430)
T ss_dssp EEEECGGGTTSSCCEEEEEEEGGGTEEEEECTTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEE
T ss_pred EEEccccccccCCCCeEEEEECCCcEEEEECCCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEE
Confidence 55532 1245555555678888888543222222210 1225789999995 5555555
Q ss_pred eCCCcEEEEeCC
Q 005352 548 GEDSNVYMWNCI 559 (701)
Q Consensus 548 s~Dg~I~iWd~~ 559 (701)
..+..|+.++++
T Consensus 418 ~~n~rIr~i~~e 429 (430)
T 3tc9_A 418 RENRRIRKIGYE 429 (430)
T ss_dssp GGGTEEEEEEEC
T ss_pred CCCCeEEEEccC
Confidence 667788887753
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=97.95 E-value=0.00019 Score=81.49 Aligned_cols=203 Identities=10% Similarity=0.041 Sum_probs=112.3
Q ss_pred eEEEEEecCC-eEEEEE-CCCcEEEEECCCCeeeeeec--CCCCeEEEEEeeCCCCEEEEEE-cC-----CcEEEEeCCC
Q 005352 357 ILDLSWSKNN-YLLSAS-IDKTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGS-ID-----GKVRIWAVLS 426 (701)
Q Consensus 357 I~~l~~s~~~-~l~s~s-~dg~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~~~~~l~sgs-~d-----g~v~iwd~~~ 426 (701)
..++++..++ .++.|+ .+..+.+||..+.+....-. ....-.++++.+ ++++++.|+ .+ ..+.+||..+
T Consensus 245 ~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~-dg~iyv~GG~~~~~~~~~~~e~yd~~t 323 (656)
T 1k3i_A 245 CPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPSS 323 (656)
T ss_dssp SCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred cccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEec-CCeEEEEeCcccCCcccccceEeCCCC
Confidence 3355667777 667776 45689999998876544322 222223455556 888999888 34 5699999988
Q ss_pred CcEEEEec-----CCCcEEEEEEeeCCCeEEEEecCC---------cEEEEECCCCeeeeeeeEEeeccc---CCCCCCe
Q 005352 427 CHVVDWVD-----IRQIVTAVCYRPDGQGGIVGSMMG---------DCRFYNVSDNHLELDAEICVHSKK---KAPCKRI 489 (701)
Q Consensus 427 ~~~~~~~~-----~~~~i~~i~~sp~g~~l~~gs~dg---------~v~i~d~~~~~~~~~~~~~~~~~~---~~~~~~i 489 (701)
.+-..... ....-....+..++..++.|+.+| .+..||..++....... ..... ......-
T Consensus 324 ~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~--~~~~~~~~~~~~~~~ 401 (656)
T 1k3i_A 324 KTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAG--KRQSNRGVAPDAMCG 401 (656)
T ss_dssp TEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEE--ECEETTEECCCCBTC
T ss_pred CcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCC--ccccccccCCCCCCC
Confidence 76443311 000000011224555556665544 46788887765432111 11100 0011122
Q ss_pred eEEEEecCCCCEEEEEECCC-----------cEEEEeCCccceeeec--ccCCC-CeEEEEEecCCCEEEEEeCC-----
Q 005352 490 TGFQFLPQDSSKVMVSCADS-----------QVRILQGPNVIGKYKG--LRRSG-NQLSACFTSDGKHIVSAGED----- 550 (701)
Q Consensus 490 ~~l~~~p~~~~~l~~~s~dg-----------~I~iwd~~~~~~~~~~--~~~~~-~v~~l~~s~dg~~l~sgs~D----- 550 (701)
.++.+...++.++++|+.++ .|.+||..+..-.... ..+.. .-.+++..|++++++.|+.+
T Consensus 402 ~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~ 481 (656)
T 1k3i_A 402 NAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPF 481 (656)
T ss_dssp EEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTT
T ss_pred ceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCc
Confidence 34444444678888887542 5777876643222111 11222 22345667899999999854
Q ss_pred ------CcEEEEeCCCCC
Q 005352 551 ------SNVYMWNCIGHE 562 (701)
Q Consensus 551 ------g~I~iWd~~~~~ 562 (701)
..+.+||..+.+
T Consensus 482 ~~~~~~~~v~~ydp~t~~ 499 (656)
T 1k3i_A 482 EDSTPVFTPEIYVPEQDT 499 (656)
T ss_dssp CCCSBCCCCEEEEGGGTE
T ss_pred CCCCcccceEEEcCCCCc
Confidence 468899986643
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=0.0017 Score=72.23 Aligned_cols=187 Identities=7% Similarity=-0.042 Sum_probs=111.8
Q ss_pred CCCcEEEEECCCCeeeeeecCCCCe---------------------------------------EEEEEeeCCCCEEEEE
Q 005352 373 IDKTVRLWRVGNDHCLRVFPHSNYV---------------------------------------TCVHFNPVDDNYFISG 413 (701)
Q Consensus 373 ~dg~I~iWd~~~~~~~~~~~h~~~V---------------------------------------~~l~f~p~~~~~l~sg 413 (701)
.++.|+.+|..+++.+..+...... ..+++.+ ...+++.+
T Consensus 180 ~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~-~~g~vy~g 258 (599)
T 1w6s_A 180 VRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDP-GTNLIYFG 258 (599)
T ss_dssp CCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEE
T ss_pred CCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeC-CCCEEEEe
Confidence 3789999999999998877632221 1345666 66677777
Q ss_pred EcC----------------CcEEEEeCCCCcEEEEecCC-----------CcEEEEEEe-eCC---CeEEEEecCCcEEE
Q 005352 414 SID----------------GKVRIWAVLSCHVVDWVDIR-----------QIVTAVCYR-PDG---QGGIVGSMMGDCRF 462 (701)
Q Consensus 414 s~d----------------g~v~iwd~~~~~~~~~~~~~-----------~~i~~i~~s-p~g---~~l~~gs~dg~v~i 462 (701)
..+ +.|..+|..+++.+-..... .++. +... .+| ..++.++.+|.+.+
T Consensus 259 ~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~ 337 (599)
T 1w6s_A 259 TGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYT 337 (599)
T ss_dssp CCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEE
T ss_pred CCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEE
Confidence 655 37999999999887332211 1121 2222 467 46777899999999
Q ss_pred EECCCCeeeeeeeEEeec-----ccCCCC--------------------------CCeeEEEEecCCCCEEEEEE-----
Q 005352 463 YNVSDNHLELDAEICVHS-----KKKAPC--------------------------KRITGFQFLPQDSSKVMVSC----- 506 (701)
Q Consensus 463 ~d~~~~~~~~~~~~~~~~-----~~~~~~--------------------------~~i~~l~~~p~~~~~l~~~s----- 506 (701)
+|..+++......+.... ...... ..-..++++| +..++++..
T Consensus 338 lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp-~~~~~yv~~~~~~~ 416 (599)
T 1w6s_A 338 LDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDP-KRELFFMGINHICM 416 (599)
T ss_dssp EETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEET-TTTEEEEEEECEEE
T ss_pred EECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCC-CCCEEEEeccccce
Confidence 999999876544321000 000000 0112345565 233333321
Q ss_pred ----------------------------------CCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCc
Q 005352 507 ----------------------------------ADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSN 552 (701)
Q Consensus 507 ----------------------------------~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~ 552 (701)
..+.|.-||..+.....+... ..+...-.+...+.+++.++.||.
T Consensus 417 ~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~-~~~~~~g~~~tagg~vf~gt~dg~ 495 (599)
T 1w6s_A 417 DWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKME-RFAVWGGTMATAGDLVFYGTLDGY 495 (599)
T ss_dssp EEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEE-SSCCCSBCEEETTTEEEEECTTSE
T ss_pred eeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecC-CCCccCcceEecCCEEEEECCCCe
Confidence 246777788776655444321 111221123346778888999999
Q ss_pred EEEEeCCCCCC
Q 005352 553 VYMWNCIGHEE 563 (701)
Q Consensus 553 I~iWd~~~~~~ 563 (701)
|+.||.+++++
T Consensus 496 l~A~D~~tG~~ 506 (599)
T 1w6s_A 496 LKARDSDTGDL 506 (599)
T ss_dssp EEEEETTTCCE
T ss_pred EEEEECCCCCE
Confidence 99999999984
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=97.93 E-value=0.011 Score=60.01 Aligned_cols=199 Identities=8% Similarity=-0.021 Sum_probs=125.8
Q ss_pred cCeEEEEEecCC--eEEEEECCCcEEEEECCC----Ceeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCC
Q 005352 355 GEILDLSWSKNN--YLLSASIDKTVRLWRVGN----DHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSC 427 (701)
Q Consensus 355 ~~I~~l~~s~~~--~l~s~s~dg~I~iWd~~~----~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~ 427 (701)
.....++|.+.+ .+++-...+.|..+++.. ......+. .-..+..+++.+..++++++-...+.|.++++...
T Consensus 30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~ 109 (316)
T 1ijq_A 30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 109 (316)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC
Confidence 456789999865 444555568999999876 22222232 22456889998735555566567789999998866
Q ss_pred cEEEEec-CCCcEEEEEEeeCCCeEEEEecC--CcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEE
Q 005352 428 HVVDWVD-IRQIVTAVCYRPDGQGGIVGSMM--GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMV 504 (701)
Q Consensus 428 ~~~~~~~-~~~~i~~i~~sp~g~~l~~gs~d--g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~ 504 (701)
....+.. .......++++|.+..|+.+... +.|..+++....... +. ........++++.++++.++++
T Consensus 110 ~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~-----~~---~~~~~~P~gla~d~~~~~lY~~ 181 (316)
T 1ijq_A 110 KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS-----LV---TENIQWPNGITLDLLSGRLYWV 181 (316)
T ss_dssp SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE-----EE---CSSCSCEEEEEEETTTTEEEEE
T ss_pred ceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEE-----EE---ECCCCCceEEEEeccCCEEEEE
Confidence 5444333 33568899999977766665543 678888886543221 00 1123457899999855556666
Q ss_pred EECCCcEEEEeCCcc-ceee-ecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 505 SCADSQVRILQGPNV-IGKY-KGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 505 ~s~dg~I~iwd~~~~-~~~~-~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
-+..+.|..+|.... ...+ ...........+++. .+.++++-...+.|..++..+++
T Consensus 182 D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 182 DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGS 240 (316)
T ss_dssp ETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCC
T ss_pred ECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCc
Confidence 666789999998632 2222 111123456788885 35555666677889999977665
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=0.0022 Score=65.42 Aligned_cols=190 Identities=14% Similarity=0.028 Sum_probs=120.9
Q ss_pred cCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec--------------------CCCCeEEEEEeeCCCCEEEEE
Q 005352 355 GEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP--------------------HSNYVTCVHFNPVDDNYFISG 413 (701)
Q Consensus 355 ~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~--------------------h~~~V~~l~f~p~~~~~l~sg 413 (701)
....+++|.+++ +++++..++.|..|+..+++...... ....+..+++.+ +...|+.+
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~-~~g~l~v~ 97 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNL-QNNQLYIV 97 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEET-TTTEEEEE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcC-CCCcEEEE
Confidence 345678899888 68888889999999987654432110 013578899986 44456666
Q ss_pred EcCCcEEEEeCCCCcEEEEec-----CCCcEEEEEEee-CCCeEEEEec-----------------CCcEEEEECCCCee
Q 005352 414 SIDGKVRIWAVLSCHVVDWVD-----IRQIVTAVCYRP-DGQGGIVGSM-----------------MGDCRFYNVSDNHL 470 (701)
Q Consensus 414 s~dg~v~iwd~~~~~~~~~~~-----~~~~i~~i~~sp-~g~~l~~gs~-----------------dg~v~i~d~~~~~~ 470 (701)
...+.|..+|..++....+.. ....+..+++.+ +|+..++-.. ++.|..||..+++.
T Consensus 98 d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~ 177 (322)
T 2fp8_A 98 DCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKET 177 (322)
T ss_dssp ETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEE
T ss_pred ECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEE
Confidence 555668889987664332221 113478899999 8876665432 36788888876654
Q ss_pred eeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEE-ECCCcEEEEeCCcc----ceeeecccCCCCeEEEEEecCCCEEE
Q 005352 471 ELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVS-CADSQVRILQGPNV----IGKYKGLRRSGNQLSACFTSDGKHIV 545 (701)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~-s~dg~I~iwd~~~~----~~~~~~~~~~~~v~~l~~s~dg~~l~ 545 (701)
.... .. ......++++| ++..|+++ ...+.|.+|+.... ...+.. ..+ ...++++++|++.+
T Consensus 178 ~~~~----~~-----~~~p~gia~~~-dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~--~~g-P~gi~~d~~G~l~v 244 (322)
T 2fp8_A 178 TLLL----KE-----LHVPGGAEVSA-DSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK--IPN-PGNIKRNADGHFWV 244 (322)
T ss_dssp EEEE----EE-----ESCCCEEEECT-TSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE--CSS-EEEEEECTTSCEEE
T ss_pred EEec----cC-----CccCcceEECC-CCCEEEEEeCCCCeEEEEECCCCcCCccceEEe--CCC-CCCeEECCCCCEEE
Confidence 3211 00 12356789999 56655444 56789999997631 112221 223 78899999998777
Q ss_pred EEeC----------CCcEEEEeC
Q 005352 546 SAGE----------DSNVYMWNC 558 (701)
Q Consensus 546 sgs~----------Dg~I~iWd~ 558 (701)
+... .+.|..++.
T Consensus 245 a~~~~~~~~~~~~~~~~v~~~d~ 267 (322)
T 2fp8_A 245 SSSEELDGNMHGRVDPKGIKFDE 267 (322)
T ss_dssp EEEEETTSSTTSCEEEEEEEECT
T ss_pred EecCcccccccCCCccEEEEECC
Confidence 6644 355667764
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.91 E-value=0.0037 Score=65.64 Aligned_cols=200 Identities=7% Similarity=-0.066 Sum_probs=129.0
Q ss_pred ccCeEEEEEecCC--eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEE
Q 005352 354 SGEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV 430 (701)
Q Consensus 354 ~~~I~~l~~s~~~--~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~ 430 (701)
...+..++|.+.+ .+++-...+.|..+++........+. .......+++.+..++++++-...+.|.+.++......
T Consensus 115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~ 194 (386)
T 3v65_B 115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK 194 (386)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCE
T ss_pred CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceE
Confidence 3457899999754 44455567889999988765444443 23356788898745556666666778999888765433
Q ss_pred EEec-CCCcEEEEEEeeCCCeEEEEec-C-CcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEEC
Q 005352 431 DWVD-IRQIVTAVCYRPDGQGGIVGSM-M-GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCA 507 (701)
Q Consensus 431 ~~~~-~~~~i~~i~~sp~g~~l~~gs~-d-g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~ 507 (701)
.... .-.....++++|.+..|+.... . +.|..+++........ . ........+|++.|.++.++++-+.
T Consensus 195 ~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~----~----~~~~~~PnGlavd~~~~~lY~aD~~ 266 (386)
T 3v65_B 195 VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRII----A----DTHLFWPNGLTIDYAGRRMYWVDAK 266 (386)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEE----E----CSSCSCEEEEEEEGGGTEEEEEETT
T ss_pred EeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEE----E----ECCCCCeeeEEEeCCCCEEEEEECC
Confidence 3332 3356899999997776666544 3 6788888875432211 0 1123457899999856666666666
Q ss_pred CCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 508 DSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 508 dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
.+.|..+|...................+++ ..+.++++-...+.|..++..+++
T Consensus 267 ~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~ 320 (386)
T 3v65_B 267 HHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGK 320 (386)
T ss_dssp TTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCC
T ss_pred CCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCc
Confidence 888999987643222212123456678888 345555666677889888865555
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=0.0031 Score=69.98 Aligned_cols=154 Identities=8% Similarity=-0.076 Sum_probs=93.6
Q ss_pred CCeEEEEECCCcEEEEECCCCeeeeeecCCC-----CeEEEEEeeCCCCEEEEEEc------CCcEEEEeCCCCcEEEEe
Q 005352 365 NNYLLSASIDKTVRLWRVGNDHCLRVFPHSN-----YVTCVHFNPVDDNYFISGSI------DGKVRIWAVLSCHVVDWV 433 (701)
Q Consensus 365 ~~~l~s~s~dg~I~iWd~~~~~~~~~~~h~~-----~V~~l~f~p~~~~~l~sgs~------dg~v~iwd~~~~~~~~~~ 433 (701)
++.++.++.|+.|..+|..+++.+..+.... .+.+--.-. + ..++.++. ++.|..+|..+++.+-..
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 192 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-K-DTVLMGCSGAELGVRGAVNAFDLKTGELKWRA 192 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-T-TEEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE-C-CEEEEEecCCccCCCCEEEEEECCCCcEEEEE
Confidence 4578888889999999999999988775322 222111111 3 45555554 789999999999877433
Q ss_pred cCCCcE---------------------------------------EEEEEeeCCCeEEEEecC----------------C
Q 005352 434 DIRQIV---------------------------------------TAVCYRPDGQGGIVGSMM----------------G 458 (701)
Q Consensus 434 ~~~~~i---------------------------------------~~i~~sp~g~~l~~gs~d----------------g 458 (701)
...... ..+++.+....+++++.+ +
T Consensus 193 ~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~ 272 (571)
T 2ad6_A 193 FATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTM 272 (571)
T ss_dssp ESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTT
T ss_pred ccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEE
Confidence 221111 235677777777777643 3
Q ss_pred cEEEEECCCCeeeeeeeEEeeccc--CCCCCCeeEEEEecCCC---CEEEEEECCCcEEEEeCCcccee
Q 005352 459 DCRFYNVSDNHLELDAEICVHSKK--KAPCKRITGFQFLPQDS---SKVMVSCADSQVRILQGPNVIGK 522 (701)
Q Consensus 459 ~v~i~d~~~~~~~~~~~~~~~~~~--~~~~~~i~~l~~~p~~~---~~l~~~s~dg~I~iwd~~~~~~~ 522 (701)
.|..+|..+++.....+...+... .....++. +.... ++ ..++.++.+|.++++|..+....
T Consensus 273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~-~G~~~~~v~~~~~~G~l~~lD~~tG~~~ 339 (571)
T 2ad6_A 273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPV-NGKMTPLLSHIDRNGILYTLNRENGNLI 339 (571)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEE-TTEEEEEEEEECTTSEEEEEETTTCCEE
T ss_pred EEEEEecCCCcEEEEecCCCCcccccccCCCCEE-Eeccc-CCcEEEEEEEeCCCcEEEEEECCCCCEE
Confidence 599999999887654332111100 01112221 22223 34 35777888999999998765443
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=0.0038 Score=69.33 Aligned_cols=152 Identities=13% Similarity=0.014 Sum_probs=93.9
Q ss_pred EEEEECCCcEEEEECCCCeeeeeecCCC-----CeEE-EEEeeCCCCEEEEEE------cCCcEEEEeCCCCcEEEEecC
Q 005352 368 LLSASIDKTVRLWRVGNDHCLRVFPHSN-----YVTC-VHFNPVDDNYFISGS------IDGKVRIWAVLSCHVVDWVDI 435 (701)
Q Consensus 368 l~s~s~dg~I~iWd~~~~~~~~~~~h~~-----~V~~-l~f~p~~~~~l~sgs------~dg~v~iwd~~~~~~~~~~~~ 435 (701)
++.++.|+.|..+|..+++.+....... .+++ -.+. ++ .+++++ .+|.|+.+|..+++.+-....
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~--~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~ 200 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV--KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYA 200 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE--TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE--CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcC
Confidence 8888899999999999999887765322 2221 1111 44 455554 379999999999988733322
Q ss_pred CCcE---------------------------------------EEEEEeeCCCeEEEEecCC----------------cE
Q 005352 436 RQIV---------------------------------------TAVCYRPDGQGGIVGSMMG----------------DC 460 (701)
Q Consensus 436 ~~~i---------------------------------------~~i~~sp~g~~l~~gs~dg----------------~v 460 (701)
.... ..+++.+....+++++.++ .|
T Consensus 201 ~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv 280 (599)
T 1w6s_A 201 TGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTI 280 (599)
T ss_dssp SSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEE
T ss_pred CCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceE
Confidence 2111 1356777788888887653 79
Q ss_pred EEEECCCCeeeeeeeEEeeccc--CCCCCCeeEEEEecCCC---CEEEEEECCCcEEEEeCCccceee
Q 005352 461 RFYNVSDNHLELDAEICVHSKK--KAPCKRITGFQFLPQDS---SKVMVSCADSQVRILQGPNVIGKY 523 (701)
Q Consensus 461 ~i~d~~~~~~~~~~~~~~~~~~--~~~~~~i~~l~~~p~~~---~~l~~~s~dg~I~iwd~~~~~~~~ 523 (701)
..+|..+++.....+...+... .....++. +.....++ ..++.++.+|.++++|..+.....
T Consensus 281 ~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw 347 (599)
T 1w6s_A 281 FGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVS 347 (599)
T ss_dssp EEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEE
T ss_pred EEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEee
Confidence 9999999987654432211100 00111121 22210134 467778899999999987655443
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00059 Score=77.39 Aligned_cols=183 Identities=11% Similarity=0.015 Sum_probs=97.2
Q ss_pred EEEecCC-eEEEEE-CC-----CcEEEEECCCCeeeee-----ecCCCCeEEEEEeeCCCCEEEEEEcCC---------c
Q 005352 360 LSWSKNN-YLLSAS-ID-----KTVRLWRVGNDHCLRV-----FPHSNYVTCVHFNPVDDNYFISGSIDG---------K 418 (701)
Q Consensus 360 l~~s~~~-~l~s~s-~d-----g~I~iWd~~~~~~~~~-----~~h~~~V~~l~f~p~~~~~l~sgs~dg---------~ 418 (701)
++..+++ .++.|+ .+ ..+.+||..+.+.... ......-....+.. ++..++.|+.+| .
T Consensus 292 ~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~-~~~iyv~Gg~~g~~~~~~~~~~ 370 (656)
T 1k3i_A 292 SATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRS-DNHAWLFGWKKGSVFQAGPSTA 370 (656)
T ss_dssp EEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTT-TCSCCEEECGGGCEEECCSSSE
T ss_pred eEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeec-CCceEEEECCCCcEEEecCccc
Confidence 3445566 666666 34 5699999988765443 11000000011112 445555555443 4
Q ss_pred EEEEeCCCCcEEEEecC----------CCcEEEEEEee-CCCeEEEEecCC-----------cEEEEECCCCeeeeeeeE
Q 005352 419 VRIWAVLSCHVVDWVDI----------RQIVTAVCYRP-DGQGGIVGSMMG-----------DCRFYNVSDNHLELDAEI 476 (701)
Q Consensus 419 v~iwd~~~~~~~~~~~~----------~~~i~~i~~sp-~g~~l~~gs~dg-----------~v~i~d~~~~~~~~~~~~ 476 (701)
+..||..+......... ...-.++.|.. +++.+++|+.++ .+.+||..+.......
T Consensus 371 v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~-- 448 (656)
T 1k3i_A 371 MNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFA-- 448 (656)
T ss_dssp EEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEEC--
T ss_pred eeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEc--
Confidence 67888877654322211 11234455543 677778877543 5778888776543211
Q ss_pred EeecccCCCCCCeeEEEEecCCCCEEEEEECC-----------CcEEEEeCCccceeee--cccCCCCeEEEEEecCCCE
Q 005352 477 CVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD-----------SQVRILQGPNVIGKYK--GLRRSGNQLSACFTSDGKH 543 (701)
Q Consensus 477 ~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~d-----------g~I~iwd~~~~~~~~~--~~~~~~~v~~l~~s~dg~~ 543 (701)
.........-.+....| ++.++++|+.+ ..+.+||..+..-... ..........+.+.|+|+.
T Consensus 449 ---~~~mp~~R~~~~~~~l~-~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v 524 (656)
T 1k3i_A 449 ---SNGLYFARTFHTSVVLP-DGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRV 524 (656)
T ss_dssp ---TTCCSSCCBSCEEEECT-TSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCE
T ss_pred ---cCCCCCCcccCCeEECC-CCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEE
Confidence 00111111223445666 67888888764 5688999764321111 1112223344556799999
Q ss_pred EEEEeC
Q 005352 544 IVSAGE 549 (701)
Q Consensus 544 l~sgs~ 549 (701)
++.|+.
T Consensus 525 ~v~GG~ 530 (656)
T 1k3i_A 525 FNGGGG 530 (656)
T ss_dssp EEEECC
T ss_pred EecCCC
Confidence 999985
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.0067 Score=65.12 Aligned_cols=208 Identities=10% Similarity=0.085 Sum_probs=120.9
Q ss_pred cCeEEEEE-------ecCC-eEEEEECCC-------cEEEEECCC-Ceee-----eeecCCCCeEEEEEeeCCCCEEEEE
Q 005352 355 GEILDLSW-------SKNN-YLLSASIDK-------TVRLWRVGN-DHCL-----RVFPHSNYVTCVHFNPVDDNYFISG 413 (701)
Q Consensus 355 ~~I~~l~~-------s~~~-~l~s~s~dg-------~I~iWd~~~-~~~~-----~~~~h~~~V~~l~f~p~~~~~l~sg 413 (701)
.....|+| ++++ .|+.+...+ .|.+.+... +... ..+..-.....++++|.++.++++-
T Consensus 186 ~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd 265 (496)
T 3kya_A 186 NRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNS 265 (496)
T ss_dssp SBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEE
T ss_pred CCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEE
Confidence 35778899 8888 566666554 256665433 1221 1222112345678898556666677
Q ss_pred EcCCcEEEEeCC-------CCcE--------------EEEecCCCcEEEEEEeeCCCeEEEE-ecCCcEEEEECCC--Ce
Q 005352 414 SIDGKVRIWAVL-------SCHV--------------VDWVDIRQIVTAVCYRPDGQGGIVG-SMMGDCRFYNVSD--NH 469 (701)
Q Consensus 414 s~dg~v~iwd~~-------~~~~--------------~~~~~~~~~i~~i~~sp~g~~l~~g-s~dg~v~i~d~~~--~~ 469 (701)
..++.|..+|+. ++.. +...........|+|+|+|+.|+++ +....|+.++... ..
T Consensus 266 ~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~ 345 (496)
T 3kya_A 266 YEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKE 345 (496)
T ss_dssp TTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTE
T ss_pred CCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcce
Confidence 778889999987 4543 1112233457899999999965555 5567888866543 22
Q ss_pred eeeeeeEEee-ccc--------CCCCCCee-EEEEec------CCCCEEEEEECCCcEEEEeCCccceeeeccc------
Q 005352 470 LELDAEICVH-SKK--------KAPCKRIT-GFQFLP------QDSSKVMVSCADSQVRILQGPNVIGKYKGLR------ 527 (701)
Q Consensus 470 ~~~~~~~~~~-~~~--------~~~~~~i~-~l~~~p------~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~------ 527 (701)
+.....+.-. ... ........ .+.... .++.++++=...+.|+.++.......+.+..
T Consensus 346 ~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~~G~v~TiaG~g~~~~~~ 425 (496)
T 3kya_A 346 FITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTPEGIVSTYAGRGASTSLA 425 (496)
T ss_dssp ECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECTTCBEEEEEESCTTHHHH
T ss_pred ecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeCCCCEEEEeccccccccc
Confidence 2100001110 000 11222344 444431 2456666667788999998543333332210
Q ss_pred ----------------CCCCeEEEEEecC-CCEEEEEeCCCcEEEEeCCCCC
Q 005352 528 ----------------RSGNQLSACFTSD-GKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 528 ----------------~~~~v~~l~~s~d-g~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
.-.....++++++ |.++++=..+.+|+.++++...
T Consensus 426 ~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~ 477 (496)
T 3kya_A 426 DGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEE 477 (496)
T ss_dssp HSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC
T ss_pred CccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCc
Confidence 1234678999997 7666666778899999987655
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.0013 Score=75.70 Aligned_cols=194 Identities=8% Similarity=-0.014 Sum_probs=100.8
Q ss_pred EEEEEecCC-eEEEEECC-----CcEEEEECCCCee--eeee--cCCCCeEEEEEeeCCCCEEEEEEc---CCcEEEEeC
Q 005352 358 LDLSWSKNN-YLLSASID-----KTVRLWRVGNDHC--LRVF--PHSNYVTCVHFNPVDDNYFISGSI---DGKVRIWAV 424 (701)
Q Consensus 358 ~~l~~s~~~-~l~s~s~d-----g~I~iWd~~~~~~--~~~~--~h~~~V~~l~f~p~~~~~l~sgs~---dg~v~iwd~ 424 (701)
..++|+|++ .|+....+ ..|.++++.+++. ...+ ........+.|+| ++++|+.... ...|.++|+
T Consensus 224 ~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~l~~~d~ 302 (751)
T 2xe4_A 224 GEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAA-DTNTLCIGSQSPETAEVHLLDL 302 (751)
T ss_dssp SCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECT-TSSEEEEEEECSSCEEEEEEES
T ss_pred eeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECC-CCCEEEEEecCCCCceEEEEEC
Confidence 357899998 56555554 3588888887642 2233 2334567889999 9998877653 345888899
Q ss_pred CCC--cE--EEEec-CCCcEEEEEEeeCCCeEEEEec-C----CcEEEEECCCC-eeeeeeeEEeecccCCCCCCeeEEE
Q 005352 425 LSC--HV--VDWVD-IRQIVTAVCYRPDGQGGIVGSM-M----GDCRFYNVSDN-HLELDAEICVHSKKKAPCKRITGFQ 493 (701)
Q Consensus 425 ~~~--~~--~~~~~-~~~~i~~i~~sp~g~~l~~gs~-d----g~v~i~d~~~~-~~~~~~~~~~~~~~~~~~~~i~~l~ 493 (701)
.++ +. ..+.. ......++.|+. |..|+..+. + ..|..+++.+. .... .+... .....+..+.
T Consensus 303 ~~~~~~~~~~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~--~li~~----~~~~~l~~~~ 375 (751)
T 2xe4_A 303 RKGNAHNTLEIVRPREKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSH--VLVDH----SEDVFMESIA 375 (751)
T ss_dssp SSCTTCCCEEESSCCCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCC--EEECC----CSSEEEEEEE
T ss_pred CCCCCCceeEEeecCCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCccccee--eEECC----CCCcEEEEEE
Confidence 875 23 32222 234445555443 555554433 3 25666676542 1110 00000 1111344444
Q ss_pred EecCCCCEEEEEECCCcE--EEEeC-------Ccc--ceeeecccCCCCeEEEEE----ecCCC-EEEEEeCC---CcEE
Q 005352 494 FLPQDSSKVMVSCADSQV--RILQG-------PNV--IGKYKGLRRSGNQLSACF----TSDGK-HIVSAGED---SNVY 554 (701)
Q Consensus 494 ~~p~~~~~l~~~s~dg~I--~iwd~-------~~~--~~~~~~~~~~~~v~~l~~----s~dg~-~l~sgs~D---g~I~ 554 (701)
+. ++.++++...++.. .++++ ... ...+... ....+..+.+ ++++. ++++.+.. ..++
T Consensus 376 ~~--~~~lv~~~~~~g~~~l~~~dl~~~~~~~~~g~~~~~l~l~-~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~ 452 (751)
T 2xe4_A 376 VR--SNYLVVAGRRAGLTRIWTMMADSQDGVFKAGTGLREVVME-EPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWF 452 (751)
T ss_dssp EC--SSEEEEEEEETTEEEEEEEECCTTTSCCCTTTCCEECCCC-CSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEE
T ss_pred EE--CCEEEEEEEeCCEEEEEEEecccccccccCCccceEECCC-CceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEE
Confidence 43 45566666777754 45564 221 1222111 1122333332 34554 44444433 4678
Q ss_pred EEeCCCCC
Q 005352 555 MWNCIGHE 562 (701)
Q Consensus 555 iWd~~~~~ 562 (701)
.+|+.+++
T Consensus 453 ~~d~~~~~ 460 (751)
T 2xe4_A 453 DVSPQDHS 460 (751)
T ss_dssp EECTTTCC
T ss_pred EEECCCCc
Confidence 88887664
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=97.76 E-value=0.0062 Score=61.98 Aligned_cols=180 Identities=6% Similarity=-0.079 Sum_probs=115.2
Q ss_pred CCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCC----CcEEEEec-CCCcEEEEEEeeCC
Q 005352 374 DKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS----CHVVDWVD-IRQIVTAVCYRPDG 448 (701)
Q Consensus 374 dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~----~~~~~~~~-~~~~i~~i~~sp~g 448 (701)
...|+..|+.+.+....+..-..+..++|++.++.++++-..++.|..+++.. ........ .-..+..+++.+.+
T Consensus 9 ~~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~ 88 (316)
T 1ijq_A 9 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH 88 (316)
T ss_dssp BSSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT
T ss_pred CCeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecC
Confidence 35688999988876666666677899999983444555555668899999876 22222232 22456789998755
Q ss_pred CeEE-EEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECC-CcEEEEeCCccceeeecc
Q 005352 449 QGGI-VGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD-SQVRILQGPNVIGKYKGL 526 (701)
Q Consensus 449 ~~l~-~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~d-g~I~iwd~~~~~~~~~~~ 526 (701)
..|+ +-...+.|.++++........ .. .......++++.|.++.++++.... +.|..+++..........
T Consensus 89 ~~ly~~d~~~~~I~~~~~~g~~~~~~----~~----~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~ 160 (316)
T 1ijq_A 89 SNIYWTDSVLGTVSVADTKGVKRKTL----FR----ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 160 (316)
T ss_dssp TEEEEEETTTTEEEEEETTSSSEEEE----EE----CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC
T ss_pred CeEEEEECCCCEEEEEeCCCCceEEE----EE----CCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEE
Confidence 5554 446678899999876533211 11 1224578999998555555554443 788888875332222111
Q ss_pred cCCCCeEEEEEecCCCEEEEEe-CCCcEEEEeCCCC
Q 005352 527 RRSGNQLSACFTSDGKHIVSAG-EDSNVYMWNCIGH 561 (701)
Q Consensus 527 ~~~~~v~~l~~s~dg~~l~sgs-~Dg~I~iWd~~~~ 561 (701)
........+++++++..|+.+. ..+.|..++++..
T Consensus 161 ~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~ 196 (316)
T 1ijq_A 161 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG 196 (316)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred CCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCC
Confidence 2345678999999877776554 5678999998753
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.76 E-value=0.011 Score=57.79 Aligned_cols=204 Identities=8% Similarity=0.119 Sum_probs=120.9
Q ss_pred ceeccCCCcEEEEEEccCCCEEEE-EeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeE
Q 005352 244 QEIQAHDGSILTMKFSPDGQYLAS-AGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (701)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Las-gs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (701)
+.+.+-.+.+..|+|+|++..|++ ...++.|...|.. ++.+..+.+
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l-------------------------------- 66 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPL-------------------------------- 66 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEEC--------------------------------
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEec--------------------------------
Confidence 345566678999999998665554 6667777777765 443332211
Q ss_pred EeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCee---eeee-------
Q 005352 323 SLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHC---LRVF------- 391 (701)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~---~~~~------- 391 (701)
.+ ....-.|++.+++ ++++.-.++.+.++++..... +...
T Consensus 67 ----------------------------~g-~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~ 117 (255)
T 3qqz_A 67 ----------------------------DF-VKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQES 117 (255)
T ss_dssp ----------------------------SS-CSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSC
T ss_pred ----------------------------CC-CCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccc
Confidence 11 1456677888877 445544667888888765432 1222
Q ss_pred cCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCC---CcEEEEec--------CCCcEEEEEEeeCCC-eEEEEecCCc
Q 005352 392 PHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS---CHVVDWVD--------IRQIVTAVCYRPDGQ-GGIVGSMMGD 459 (701)
Q Consensus 392 ~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~---~~~~~~~~--------~~~~i~~i~~sp~g~-~l~~gs~dg~ 459 (701)
..+.....|+|+| .++.|+++.......||.+.. ...+.... .-..+.+++++|... +++.......
T Consensus 118 ~~N~g~EGLA~d~-~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~ 196 (255)
T 3qqz_A 118 PTNCGFEGLAYSR-QDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRA 196 (255)
T ss_dssp CCSSCCEEEEEET-TTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTE
T ss_pred cccCCcceEEEeC-CCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCe
Confidence 1344568999999 666666666555555555431 11111111 123578999999654 5555666777
Q ss_pred EEEEECCCCeeeeeeeEEeecc---cCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEe
Q 005352 460 CRFYNVSDNHLELDAEICVHSK---KKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQ 515 (701)
Q Consensus 460 v~i~d~~~~~~~~~~~~~~~~~---~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd 515 (701)
+..+|.... .... +.+... .........+|+|.+ +++ |++.+..+.++.+.
T Consensus 197 L~~~d~~g~-~~~~--~~L~~g~~~l~~~~~qpEGia~d~-~G~-lyIvsE~n~~y~f~ 250 (255)
T 3qqz_A 197 LQEVTLVGE-VIGE--MSLTKGSRGLSHNIKQAEGVAMDA-SGN-IYIVSEPNRFYRFT 250 (255)
T ss_dssp EEEECTTCC-EEEE--EECSTTGGGCSSCCCSEEEEEECT-TCC-EEEEETTTEEEEEE
T ss_pred EEEEcCCCC-EEEE--EEcCCccCCcccccCCCCeeEECC-CCC-EEEEcCCceEEEEE
Confidence 888997754 3221 122211 112234678999999 566 44457777776664
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.75 E-value=0.0072 Score=62.46 Aligned_cols=197 Identities=8% Similarity=-0.037 Sum_probs=126.5
Q ss_pred CeEEEEEecCCeEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecC
Q 005352 356 EILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDI 435 (701)
Q Consensus 356 ~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~ 435 (701)
..+|.+..++.+|+.+. ...|+..++..............+..++|++.++.++++-...+.|..+++.......+...
T Consensus 35 ~~~C~~~~~~~~ll~~~-~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~ 113 (349)
T 3v64_C 35 RRSCKALGPEPVLLFAN-RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST 113 (349)
T ss_dssp SSCEEESSSCCEEEEEC-BSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS
T ss_pred CCcccccccCceeEeec-ccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeC
Confidence 34455555545444433 45688888877666555555566899999984555555555678899999987654443332
Q ss_pred -CCcEEEEEEeeCCCeE-EEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECC-CcEE
Q 005352 436 -RQIVTAVCYRPDGQGG-IVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD-SQVR 512 (701)
Q Consensus 436 -~~~i~~i~~sp~g~~l-~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~d-g~I~ 512 (701)
......+++.+.+..| ++-...+.|.++++........ . ........++++.|.++.++++-... +.|.
T Consensus 114 ~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l----~----~~~l~~P~~iavdp~~g~ly~td~~~~~~I~ 185 (349)
T 3v64_C 114 GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVL----L----WQSLEKPRAIALHPMEGTIYWTDWGNTPRIE 185 (349)
T ss_dssp SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE----E----CTTCSCEEEEEEETTTTEEEEEECSSSCEEE
T ss_pred CCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEE----E----eCCCCCcceEEEecCcCeEEEeccCCCCEEE
Confidence 2456788999855555 4455578899999876532211 1 11234568999999666666665555 8898
Q ss_pred EEeCCccceeeecccCCCCeEEEEEecCCCEEEEE-eCCCcEEEEeCCCC
Q 005352 513 ILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSA-GEDSNVYMWNCIGH 561 (701)
Q Consensus 513 iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sg-s~Dg~I~iWd~~~~ 561 (701)
.+++..................++++|++..|+.+ ...+.|..++++..
T Consensus 186 r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~ 235 (349)
T 3v64_C 186 ASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS 235 (349)
T ss_dssp EEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred EEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCC
Confidence 88876433222222234567899999877766655 45678999998754
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.73 E-value=0.012 Score=59.76 Aligned_cols=199 Identities=4% Similarity=-0.065 Sum_probs=127.7
Q ss_pred CeEEEEEecC-C-eEEEEECCCcEEEEECCCCeee-eee-cCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEE
Q 005352 356 EILDLSWSKN-N-YLLSASIDKTVRLWRVGNDHCL-RVF-PHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD 431 (701)
Q Consensus 356 ~I~~l~~s~~-~-~l~s~s~dg~I~iWd~~~~~~~-~~~-~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~ 431 (701)
.+..++|.+. + .+.+-...+.|..+++...... ..+ ..-.....+++.+..++++++-...+.|.++++.......
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~ 115 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKV 115 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEE
Confidence 4668899985 4 4455556788999998766321 122 2234567899987456666666667889999987654333
Q ss_pred Ee-cCCCcEEEEEEeeCCCeEEEEec--CCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECC
Q 005352 432 WV-DIRQIVTAVCYRPDGQGGIVGSM--MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD 508 (701)
Q Consensus 432 ~~-~~~~~i~~i~~sp~g~~l~~gs~--dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~d 508 (701)
.. ........+++.|.+..|+.+.. .+.|..+++....... +. ........++++.|+++.++++-+..
T Consensus 116 l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~-----~~---~~~l~~Pnglavd~~~~~lY~aD~~~ 187 (318)
T 3sov_A 116 LFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFI-----II---NSEIYWPNGLTLDYEEQKLYWADAKL 187 (318)
T ss_dssp EECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEE-----EE---CSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred EEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEE-----EE---ECCCCCccEEEEeccCCEEEEEECCC
Confidence 33 34456889999997767766653 5788888887543211 00 11234568999999666666666668
Q ss_pred CcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCC
Q 005352 509 SQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEE 563 (701)
Q Consensus 509 g~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~ 563 (701)
+.|..+|...................+++.. +.++++-...+.|..++..+++.
T Consensus 188 ~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~ 241 (318)
T 3sov_A 188 NFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEG 241 (318)
T ss_dssp TEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCS
T ss_pred CEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCc
Confidence 8999999763222211112345567788753 34555556678899999877763
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=97.72 E-value=0.027 Score=59.24 Aligned_cols=203 Identities=8% Similarity=-0.018 Sum_probs=129.4
Q ss_pred CCccCeEEEEEecCC-eE-EEEECCCcEEEEECCCC----eeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeC
Q 005352 352 GHSGEILDLSWSKNN-YL-LSASIDKTVRLWRVGND----HCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAV 424 (701)
Q Consensus 352 ~h~~~I~~l~~s~~~-~l-~s~s~dg~I~iWd~~~~----~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~ 424 (701)
.....+..|+|.+.+ .| ++-...+.|+.+++... .....+. .......+++.+..++++++-...+.|.+.++
T Consensus 109 ~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~ 188 (400)
T 3p5b_L 109 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT 188 (400)
T ss_dssp CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECT
T ss_pred cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeC
Confidence 345678899999854 44 44455788999988752 2223333 34567899998745666666666788999999
Q ss_pred CCCcEEEEec-CCCcEEEEEEeeCCCeEEEEec--CCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCE
Q 005352 425 LSCHVVDWVD-IRQIVTAVCYRPDGQGGIVGSM--MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSK 501 (701)
Q Consensus 425 ~~~~~~~~~~-~~~~i~~i~~sp~g~~l~~gs~--dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~ 501 (701)
.......... .-.....|++.|.+..|+.... .+.|...++........ . ........+|++.+.++.+
T Consensus 189 ~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~----~----~~~l~~P~glavd~~~~~l 260 (400)
T 3p5b_L 189 KGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL----V----TENIQWPNGITLDLLSGRL 260 (400)
T ss_dssp TTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEE----E----CSSCSCEEEEEEETTTTEE
T ss_pred CCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEE----E----ECCCCceEEEEEEeCCCEE
Confidence 8765554443 3456889999997777766653 37888888876433211 0 1123467899999855555
Q ss_pred EEEEECCCcEEEEeCCccce-ee-ecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCC
Q 005352 502 VMVSCADSQVRILQGPNVIG-KY-KGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEE 563 (701)
Q Consensus 502 l~~~s~dg~I~iwd~~~~~~-~~-~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~ 563 (701)
+++-...+.|..+|...... .+ ...........+++. .+.++++-...+.|..++..+++.
T Consensus 261 Y~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~ 323 (400)
T 3p5b_L 261 YWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSD 323 (400)
T ss_dssp EEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCC
T ss_pred EEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCc
Confidence 56556678899999763222 22 211123455677773 344555666778899999766653
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=97.59 E-value=0.015 Score=64.47 Aligned_cols=194 Identities=13% Similarity=0.033 Sum_probs=115.6
Q ss_pred CCeEEEEECCCcEEEEECCCCeeeeeecCCCCe----------EEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEec
Q 005352 365 NNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYV----------TCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVD 434 (701)
Q Consensus 365 ~~~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V----------~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~ 434 (701)
++.++.++.++.|.-+|..+++.+..+...... ..+++ .+..++.++.|+.|.-+|..+++.+-...
T Consensus 68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~---~~~~v~~~t~dg~l~AlD~~TG~~~W~~~ 144 (582)
T 1flg_A 68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI---YGDKVFFGTLDASVVALNKNTGKVVWKKK 144 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE---ETTEEEEEETTTEEEEEESSSCCEEEEEE
T ss_pred CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE---ECCEEEEEeCCCEEEEEECCCCCEEeeec
Confidence 566666666445999999999998887632211 12233 34577888889999999999998873332
Q ss_pred CCC-----cEE-EEEEee---CCC-eEEEEec------CCcEEEEECCCCeeeeeeeEEe-----ec--------ccC--
Q 005352 435 IRQ-----IVT-AVCYRP---DGQ-GGIVGSM------MGDCRFYNVSDNHLELDAEICV-----HS--------KKK-- 483 (701)
Q Consensus 435 ~~~-----~i~-~i~~sp---~g~-~l~~gs~------dg~v~i~d~~~~~~~~~~~~~~-----~~--------~~~-- 483 (701)
... .+. ...+.. +|+ .+++++. +|.|.-+|..+++......... .. ...
T Consensus 145 ~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~ 224 (582)
T 1flg_A 145 FADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAP 224 (582)
T ss_dssp CSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCT
T ss_pred CCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccc
Confidence 211 111 111111 233 5666653 7899999999988765432110 00 000
Q ss_pred ------------------CCCCCeeEEEEecCCCCEEEEEEC--------------------C----CcEEEEeCCccce
Q 005352 484 ------------------APCKRITGFQFLPQDSSKVMVSCA--------------------D----SQVRILQGPNVIG 521 (701)
Q Consensus 484 ------------------~~~~~i~~l~~~p~~~~~l~~~s~--------------------d----g~I~iwd~~~~~~ 521 (701)
.....-...++.| ...+++++.. | +.|.-+|..+...
T Consensus 225 ~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~-~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~ 303 (582)
T 1flg_A 225 SWPDDRNSPTGKVESWSHGGGAPWQSASFDA-ETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEV 303 (582)
T ss_dssp TSCBCTTSTTSBCGGGGGCBCCCCSCCEEET-TTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCE
T ss_pred cCCCccccccccccccccCCccccCCceEcC-CCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCE
Confidence 0000112356666 4456665553 2 5788899887666
Q ss_pred eeecc--cCC--------CCeEEEEEe-cCCC---EEEEEeCCCcEEEEeCCCCCC
Q 005352 522 KYKGL--RRS--------GNQLSACFT-SDGK---HIVSAGEDSNVYMWNCIGHEE 563 (701)
Q Consensus 522 ~~~~~--~~~--------~~v~~l~~s-~dg~---~l~sgs~Dg~I~iWd~~~~~~ 563 (701)
..... .|. .++. +... .+|+ .|+.++.+|.++++|..+++.
T Consensus 304 ~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~ 358 (582)
T 1flg_A 304 KWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKL 358 (582)
T ss_dssp EEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCE
T ss_pred EEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCE
Confidence 55432 121 1222 2222 4674 788999999999999999874
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=97.59 E-value=0.014 Score=61.56 Aligned_cols=187 Identities=7% Similarity=-0.066 Sum_probs=120.4
Q ss_pred eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCC----cEEEEec-CCCcEEE
Q 005352 367 YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSC----HVVDWVD-IRQIVTA 441 (701)
Q Consensus 367 ~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~----~~~~~~~-~~~~i~~ 441 (701)
+|+.+. ...|+..++..............+..++|++.++.++++-...+.|+.+++... ....... ....+..
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~g 163 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG 163 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEE
T ss_pred eeEEec-cceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCccc
Confidence 444444 467888999887766666666788999999844545555556788999998752 2223332 3456888
Q ss_pred EEEeeCCC-eEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEEC-CCcEEEEeCCcc
Q 005352 442 VCYRPDGQ-GGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCA-DSQVRILQGPNV 519 (701)
Q Consensus 442 i~~sp~g~-~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~-dg~I~iwd~~~~ 519 (701)
+++.+.+. .+++-...+.|.+.++......... . .......+|++.|..+.++++-.. .+.|...++...
T Consensus 164 lavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~----~----~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~ 235 (400)
T 3p5b_L 164 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLF----R----ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV 235 (400)
T ss_dssp EEEETTTTEEEEEETTTTEEEEECTTTCSEEEEE----E----CSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSC
T ss_pred EEEEecCCceEEEECCCCeEEEEeCCCCceEEEE----e----CCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCC
Confidence 99998544 4445556788999998865432211 1 122447899999955555554433 478888887643
Q ss_pred ceeeecccCCCCeEEEEEecCCCEEEEEe-CCCcEEEEeCCCCC
Q 005352 520 IGKYKGLRRSGNQLSACFTSDGKHIVSAG-EDSNVYMWNCIGHE 562 (701)
Q Consensus 520 ~~~~~~~~~~~~v~~l~~s~dg~~l~sgs-~Dg~I~iWd~~~~~ 562 (701)
...............+++++++..|+.+. ..+.|..++++...
T Consensus 236 ~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~ 279 (400)
T 3p5b_L 236 DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN 279 (400)
T ss_dssp SCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC
T ss_pred ccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCc
Confidence 33222222345778999999887777664 56789999987643
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=97.57 E-value=0.01 Score=65.82 Aligned_cols=144 Identities=10% Similarity=0.056 Sum_probs=84.4
Q ss_pred CcEEEEeCCCCcEEEEec---CC--------CcEEEEEEe-eCCC---eEEEEecCCcEEEEECCCCeeeeeeeEEeec-
Q 005352 417 GKVRIWAVLSCHVVDWVD---IR--------QIVTAVCYR-PDGQ---GGIVGSMMGDCRFYNVSDNHLELDAEICVHS- 480 (701)
Q Consensus 417 g~v~iwd~~~~~~~~~~~---~~--------~~i~~i~~s-p~g~---~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~- 480 (701)
+.|..+|..+++.+-... +. .++. +... .+|+ .++.++.+|.++++|..+++......+....
T Consensus 291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~ 369 (582)
T 1flg_A 291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNIT 369 (582)
T ss_dssp SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCC
T ss_pred ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCcc
Confidence 579999999999874332 21 1121 2222 4674 7888999999999999998876543321100
Q ss_pred ----------------ccCC--------CC------------CCeeEEEEecCCCCEEEEEE------------------
Q 005352 481 ----------------KKKA--------PC------------KRITGFQFLPQDSSKVMVSC------------------ 506 (701)
Q Consensus 481 ----------------~~~~--------~~------------~~i~~l~~~p~~~~~l~~~s------------------ 506 (701)
.... .. .....++++|..+ ++++..
T Consensus 370 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g-~~yv~~~~~~~~~~~~~~~~~~g~ 448 (582)
T 1flg_A 370 WASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTG-LFYVPANHWKEDYWTEEVSYTKGS 448 (582)
T ss_dssp SEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTC-CEEEEEECEEEEEEECCCCCCTTS
T ss_pred ccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCC-EEEEechhcceeeecccccccCCC
Confidence 0000 00 0011345666333 333322
Q ss_pred ---------------CCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCC
Q 005352 507 ---------------ADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEE 563 (701)
Q Consensus 507 ---------------~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~ 563 (701)
.++.|.-||..+.....+.... .++..-.....+.+++.++.||.++.||.+++++
T Consensus 449 ~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~ 519 (582)
T 1flg_A 449 AYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKE 519 (582)
T ss_dssp CCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred ceeccceeecCCCCCCcceEEEEECCCCCEEEEecCC-CCCcccceEeCCCEEEEECCCCcEEEEECCCCCE
Confidence 2577888998876655443211 1222222233567888899999999999999883
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.039 Score=55.51 Aligned_cols=203 Identities=8% Similarity=0.037 Sum_probs=128.1
Q ss_pred CCccCeEEEEEecCC-eEEEEE-CCCcEEEEECCCCeeeee-ecC-------CCCeEEEEE---eeCCCCEEEEEEc---
Q 005352 352 GHSGEILDLSWSKNN-YLLSAS-IDKTVRLWRVGNDHCLRV-FPH-------SNYVTCVHF---NPVDDNYFISGSI--- 415 (701)
Q Consensus 352 ~h~~~I~~l~~s~~~-~l~s~s-~dg~I~iWd~~~~~~~~~-~~h-------~~~V~~l~f---~p~~~~~l~sgs~--- 415 (701)
....--.+++|.+.. .|+.++ ..++|..|+...+..... +.. ...+..|.| .| ++.++++...
T Consensus 10 ~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~~~a 88 (334)
T 2p9w_A 10 VKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKNAKS 88 (334)
T ss_dssp CTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEETTT
T ss_pred CcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC-CCcEEEEEccccc
Confidence 334445578998855 666666 789999999976644333 322 114689999 68 6667765432
Q ss_pred ----------CCcEEEEeCC---CCcEEEEecC--------------CCcEEEEEEeeCCCeEEEEecC-CcEEEEECCC
Q 005352 416 ----------DGKVRIWAVL---SCHVVDWVDI--------------RQIVTAVCYRPDGQGGIVGSMM-GDCRFYNVSD 467 (701)
Q Consensus 416 ----------dg~v~iwd~~---~~~~~~~~~~--------------~~~i~~i~~sp~g~~l~~gs~d-g~v~i~d~~~ 467 (701)
+..|..||+. +++.+..... ......++..++|+..++++.. +.|..++...
T Consensus 89 f~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG 168 (334)
T 2p9w_A 89 FNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADG 168 (334)
T ss_dssp TCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTS
T ss_pred ccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCC
Confidence 5779999999 7766544332 1248899999999999999988 8888888765
Q ss_pred CeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccce-eeecc--c---CCCCeEEE-EEecC
Q 005352 468 NHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIG-KYKGL--R---RSGNQLSA-CFTSD 540 (701)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~-~~~~~--~---~~~~v~~l-~~s~d 540 (701)
..... +.............++|++.| ++..|++....+.|..+|+..... .+... + .......+ ..-.+
T Consensus 169 ~~~~~---~~~~~~~~~~~~G~nGIv~~p-dg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~ 244 (334)
T 2p9w_A 169 KTVST---FAWESGNGGQRPGYSGITFDP-HSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVG 244 (334)
T ss_dssp CCEEE---EEECCCCSSSCCSCSEEEEET-TTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEET
T ss_pred CEEee---eeecCCCcccccCcceEEEeC-CCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccC
Confidence 43221 111111122334578999999 677777776699999999885433 12211 1 11223333 33457
Q ss_pred CCE-EEEEeCCCcEEEEeCC
Q 005352 541 GKH-IVSAGEDSNVYMWNCI 559 (701)
Q Consensus 541 g~~-l~sgs~Dg~I~iWd~~ 559 (701)
|+. |++.+..+.+.+.+-+
T Consensus 245 G~vllV~~~~~~~~~l~S~D 264 (334)
T 2p9w_A 245 NESVLVGARAPYAISFRSWD 264 (334)
T ss_dssp TEEEEEEEETTEEEEEECSS
T ss_pred CEEEEEEcCCCCEEEEECCC
Confidence 777 5555566655555543
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.011 Score=62.09 Aligned_cols=194 Identities=8% Similarity=-0.028 Sum_probs=124.3
Q ss_pred EEEEecCCeEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecC-CC
Q 005352 359 DLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDI-RQ 437 (701)
Q Consensus 359 ~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~ 437 (701)
|.+..+..+|+.+. ...|+..++..............+..++|++.++.++++-...+.|..+++.......+... ..
T Consensus 81 C~~~~~~~~l~~~~-~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~ 159 (386)
T 3v65_B 81 CKALGPEPVLLFAN-RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLE 159 (386)
T ss_dssp EEECSSCCEEEEEC-BSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCS
T ss_pred ECCccccceeEeec-CccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCC
Confidence 44444444444443 45788889887766655555567899999984555555655678899999987765444332 23
Q ss_pred cEEEEEEeeCCCeEE-EEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECC-CcEEEEe
Q 005352 438 IVTAVCYRPDGQGGI-VGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD-SQVRILQ 515 (701)
Q Consensus 438 ~i~~i~~sp~g~~l~-~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~d-g~I~iwd 515 (701)
....+++.+.+..|+ +-...+.|.++++........ . ........++++.|.++.++++-... +.|..++
T Consensus 160 ~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l----~----~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~ 231 (386)
T 3v65_B 160 SPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVL----L----WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASS 231 (386)
T ss_dssp CCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEE----E----CSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred CccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEe----e----cCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEe
Confidence 567788988655554 445567888888875432211 1 11234578999998655555555555 7888888
Q ss_pred CCccceeeecccCCCCeEEEEEecCCCEEEEE-eCCCcEEEEeCCCC
Q 005352 516 GPNVIGKYKGLRRSGNQLSACFTSDGKHIVSA-GEDSNVYMWNCIGH 561 (701)
Q Consensus 516 ~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sg-s~Dg~I~iWd~~~~ 561 (701)
+..................++|+|++..|+.+ +..+.|..++++..
T Consensus 232 ~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~ 278 (386)
T 3v65_B 232 MDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS 278 (386)
T ss_dssp TTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSC
T ss_pred CCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCC
Confidence 76433322222234567899999877766655 45678999998754
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.0054 Score=70.57 Aligned_cols=194 Identities=9% Similarity=0.061 Sum_probs=106.7
Q ss_pred CeEEEEEe-cCC-eEE-EEECCC----cEEEEECCCC-eeeee-ecCCCCeEEEEEeeCCCCEEEEEEcC-----CcEEE
Q 005352 356 EILDLSWS-KNN-YLL-SASIDK----TVRLWRVGND-HCLRV-FPHSNYVTCVHFNPVDDNYFISGSID-----GKVRI 421 (701)
Q Consensus 356 ~I~~l~~s-~~~-~l~-s~s~dg----~I~iWd~~~~-~~~~~-~~h~~~V~~l~f~p~~~~~l~sgs~d-----g~v~i 421 (701)
.+...+|| |+| +|+ +.+.+| +|+++|+.++ +.+.. +. .....+.|+| +++.|+....+ ..|.+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~--~~~~~~~Wsp-Dg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS--GTNGEIVWGP-DHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE--EECSCCEECS-STTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc--CceeeEEEec-CCCEEEEEEECCCCCCCEEEE
Confidence 57788999 999 555 333333 4999999998 63211 11 1234688999 88877777665 25888
Q ss_pred EeCCCCcE--EEEe--cCCCcEEEEEEeeCCCeEEEEec---CCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEE
Q 005352 422 WAVLSCHV--VDWV--DIRQIVTAVCYRPDGQGGIVGSM---MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQF 494 (701)
Q Consensus 422 wd~~~~~~--~~~~--~~~~~i~~i~~sp~g~~l~~gs~---dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 494 (701)
+++.+++. ..+. ........+.|+|||++|+.... ...|.++|+.+...... +.............+.|
T Consensus 252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~----~~~l~~~~~~~~~s~~~ 327 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNT----LEIVRPREKGVRYDVQM 327 (751)
T ss_dssp EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCC----EEESSCCCTTCCEEEEE
T ss_pred EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCce----eEEeecCCCCceEEEee
Confidence 88877642 1221 22344678899999999887663 34588888876421100 00001111233344444
Q ss_pred ecCCCCEEEEEECC----CcEEEEeCCccc--ee-eecccCCCCeEEEEEecCCCEEEEEeCCCcE--EEEeC
Q 005352 495 LPQDSSKVMVSCAD----SQVRILQGPNVI--GK-YKGLRRSGNQLSACFTSDGKHIVSAGEDSNV--YMWNC 558 (701)
Q Consensus 495 ~p~~~~~l~~~s~d----g~I~iwd~~~~~--~~-~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I--~iWd~ 558 (701)
.. ++.+++.+..+ ..|..++..+.. .. +........+..+++. .+.++++...++.. +++++
T Consensus 328 ~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 328 HG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp ET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred ee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence 33 34444444433 356677765321 11 2221111234445443 23445666777764 45554
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.0046 Score=65.92 Aligned_cols=156 Identities=11% Similarity=0.061 Sum_probs=101.2
Q ss_pred CeEEEEEeeC-CCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecC-C----cEEEEECCCCe
Q 005352 396 YVTCVHFNPV-DDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMM-G----DCRFYNVSDNH 469 (701)
Q Consensus 396 ~V~~l~f~p~-~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~d-g----~v~i~d~~~~~ 469 (701)
....|+++|. ++. |+.+...+.|+.+|+..+.+..+.........++++++|+.|+++... + .+..++... .
T Consensus 138 ~P~~lavdp~~~g~-Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g-~ 215 (430)
T 3tc9_A 138 GAVWLSFDPKNHNH-LYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRES-G 215 (430)
T ss_dssp CCCEEEEETTEEEE-EEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGG-T
T ss_pred CCCEEEECCCCCCe-EEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCC-c
Confidence 5678899972 344 555544488999999888777666666779999999999977766542 2 233344322 2
Q ss_pred eeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccce-eeecccCCCCeEEEEEecCCCEEEE-E
Q 005352 470 LELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIG-KYKGLRRSGNQLSACFTSDGKHIVS-A 547 (701)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~-~~~~~~~~~~v~~l~~s~dg~~l~s-g 547 (701)
......+ . ......++++.|.++.++++-..++.|+.++...... .+...........++|+|+|++|+. -
T Consensus 216 ~~~~~~l--~-----~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d 288 (430)
T 3tc9_A 216 FKVITEL--T-----KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVV 288 (430)
T ss_dssp SCSEEEE--E-----ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEE
T ss_pred eeeeeee--c-----cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEE
Confidence 2110111 1 1234567889986667777766789999999875433 2222222345789999999995554 4
Q ss_pred eCCCcEEEEeCCC
Q 005352 548 GEDSNVYMWNCIG 560 (701)
Q Consensus 548 s~Dg~I~iWd~~~ 560 (701)
...+.|+.++.+.
T Consensus 289 ~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 289 VNQHYILRSDYDW 301 (430)
T ss_dssp TTTTEEEEEEEET
T ss_pred CCCCEEEEEeCCc
Confidence 5678899988764
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.36 E-value=0.083 Score=53.60 Aligned_cols=182 Identities=11% Similarity=0.163 Sum_probs=116.8
Q ss_pred eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCC----C---EEEEEEc---CCcEEEEeC--CCCcEEEEec
Q 005352 367 YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDD----N---YFISGSI---DGKVRIWAV--LSCHVVDWVD 434 (701)
Q Consensus 367 ~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~----~---~l~sgs~---dg~v~iwd~--~~~~~~~~~~ 434 (701)
.++.....+-+.+||+ +++.++.+.. +.++.+..-| +- . ++++... +++|.+|++ .++++.....
T Consensus 42 ~ii~t~k~~gL~Vydl-~G~~l~~~~~-g~~nnVD~r~-~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~ 118 (355)
T 3amr_A 42 KLITTNKKSGLVVYSL-DGKMLHSYNT-GKLNNVDIRY-DFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTD 118 (355)
T ss_dssp EEEEEETTTEEEEEET-TSCEEEEECC-SCEEEEEEEE-EEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSC
T ss_pred EEEEEcCCCCEEEEcC-CCcEEEEccC-CCcccEEEec-ccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccc
Confidence 6777778889999999 8888888764 6678887776 21 1 2333333 578999977 4444333311
Q ss_pred ------CC-CcEEEEEE--eeC-CC-eEEEEecCCcEEEEECCC---Ceeeee--eeEEeecccCCCCCCeeEEEEecCC
Q 005352 435 ------IR-QIVTAVCY--RPD-GQ-GGIVGSMMGDCRFYNVSD---NHLELD--AEICVHSKKKAPCKRITGFQFLPQD 498 (701)
Q Consensus 435 ------~~-~~i~~i~~--sp~-g~-~l~~gs~dg~v~i~d~~~---~~~~~~--~~~~~~~~~~~~~~~i~~l~~~p~~ 498 (701)
.. ..+..+|+ +|. ++ ++++...+|.+..|++.. +..... ..+. ....+..+...+ .
T Consensus 119 ~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~-------lgsq~EgcvvDd-~ 190 (355)
T 3amr_A 119 PDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK-------MNSQTEGMAADD-E 190 (355)
T ss_dssp TTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE-------CSSCEEEEEEET-T
T ss_pred cccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec-------CCCCcceEEEcC-C
Confidence 11 55677888 664 43 688888999999999843 222111 1111 124678888887 6
Q ss_pred CCEEEEEECCCcEEEEeCC-----ccceeee--cccCCCCeEEEEE--ecCCC-EEEEEe-CCCcEEEEeCC
Q 005352 499 SSKVMVSCADSQVRILQGP-----NVIGKYK--GLRRSGNQLSACF--TSDGK-HIVSAG-EDSNVYMWNCI 559 (701)
Q Consensus 499 ~~~l~~~s~dg~I~iwd~~-----~~~~~~~--~~~~~~~v~~l~~--s~dg~-~l~sgs-~Dg~I~iWd~~ 559 (701)
...|+++-.+..|..++.. +...... ...-...+..|++ .++++ ||++++ .+....+|+..
T Consensus 191 ~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 191 YGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp TTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred CCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 7889999998777777754 1111111 1112246888888 45555 666665 67799999986
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.1 Score=59.75 Aligned_cols=205 Identities=9% Similarity=-0.015 Sum_probs=127.6
Q ss_pred EcCCccCeEEEEEecCC--eEEEEECCCcEEEEECCCC----eeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEE
Q 005352 350 FHGHSGEILDLSWSKNN--YLLSASIDKTVRLWRVGND----HCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIW 422 (701)
Q Consensus 350 ~~~h~~~I~~l~~s~~~--~l~s~s~dg~I~iWd~~~~----~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iw 422 (701)
+......+..|+|.+.. ++++-...+.|+.+++... .....+. .-.....|++.+..++++++-...+.|.+.
T Consensus 419 l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~ 498 (791)
T 3m0c_C 419 LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVA 498 (791)
T ss_dssp EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEE
T ss_pred eecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEE
Confidence 33345667899999854 4445555678998988753 2233333 345677899988455666666677899999
Q ss_pred eCCCCcEEEEec-CCCcEEEEEEeeCCCeEEEEec--CCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCC
Q 005352 423 AVLSCHVVDWVD-IRQIVTAVCYRPDGQGGIVGSM--MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDS 499 (701)
Q Consensus 423 d~~~~~~~~~~~-~~~~i~~i~~sp~g~~l~~gs~--dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~ 499 (701)
++.......+.. .-.....|++.|.+..|+.... .+.|...++........ + ........+|++.+..+
T Consensus 499 ~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~l----v----~~~l~~P~GLavD~~~~ 570 (791)
T 3m0c_C 499 DTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL----V----TENIQWPNGITLDLLSG 570 (791)
T ss_dssp ETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEE----E----CSSCSCEEEEEEETTTT
T ss_pred eCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEE----E----eCCCCCceEEEEecCCC
Confidence 998766554443 3456899999998767766653 26788888876543211 1 11235678999998555
Q ss_pred CEEEEEECCCcEEEEeCCccceee--ecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCC
Q 005352 500 SKVMVSCADSQVRILQGPNVIGKY--KGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEE 563 (701)
Q Consensus 500 ~~l~~~s~dg~I~iwd~~~~~~~~--~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~ 563 (701)
.++++-...+.|..+++....... ...........|++..+ .++++-...+.|...+..+++.
T Consensus 571 ~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~-~lYwtD~~~~~I~~~dk~tG~~ 635 (791)
T 3m0c_C 571 RLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSD 635 (791)
T ss_dssp EEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETT-EEEEEETTTTEEEEEETTTCCC
T ss_pred eEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCC-EEEEEECCCCEEEEEeCCCCcc
Confidence 556665667889999876332222 21112334566766433 3334445667888888777653
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=97.30 E-value=0.29 Score=58.57 Aligned_cols=323 Identities=11% Similarity=0.060 Sum_probs=156.4
Q ss_pred CcceeeecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccC------CCEEEEEeC-CCcEEE
Q 005352 204 GEGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPD------GQYLASAGD-DGVVRL 276 (701)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspd------g~~Lasgs~-Dg~I~i 276 (701)
..+...+.++..++.++ ++.+.++.++... +... ...+ -...|.|+++.|. ++++|.|.. |++|+|
T Consensus 514 ~~I~~As~n~~~vvva~-g~~l~~fel~~~~--L~~~-~~~~---l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I 586 (1158)
T 3ei3_A 514 KNISVASCNSSQVVVAV-GRALYYLQIHPQE--LRQI-SHTE---MEHEVACLDITPLGDSNGLSPLCAIGLWTDISARI 586 (1158)
T ss_dssp CCCCEEEECSSEEEEEE-TTEEEEEEEETTE--EEEE-EEEE---CSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEE
T ss_pred CEEEEEEeCCCEEEEEE-CCEEEEEEeeCCc--eeee-cccC---CCCceEEEEeecCCCCcccccEEEEEECCCCEEEE
Confidence 34556666666666664 5677777665321 1111 1112 2457999999863 468999997 999999
Q ss_pred EEeecCeeeeeecCCC-CCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEE--EcCCccccccCCCeEEEcCC
Q 005352 277 WQVVEDERLTEVDIPE-IDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACV--VFPPKVFRILEKPLHEFHGH 353 (701)
Q Consensus 277 Wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~h 353 (701)
+++.+.+.+....+.. ..+..+.+.... .. ..+. -+..++..+ .++.....+... ...+.|
T Consensus 587 ~sL~~l~~~~~~~L~~~~~p~si~l~~~~-~~-~~L~------------igl~dG~l~~~~~d~~tg~l~d~-r~~~LG- 650 (1158)
T 3ei3_A 587 LKLPSFELLHKEMLGGEIIPRSILMTTFE-SS-HYLL------------CALGDGALFYFGLNIETGLLSDR-KKVTLG- 650 (1158)
T ss_dssp EETTTCCEEEEEECCSSCCEEEEEEEEET-TE-EEEE------------EEETTSEEEEEEECTTTCCEEEE-EEEECC-
T ss_pred EECCCCCeEEEEECCCCCCCcEEEEEEeC-CC-cEEE------------EEeCCCeEEEEEEcCCCCccccc-eeEEcC-
Confidence 9998766655444432 112222111110 00 0011 111111111 111111111111 112223
Q ss_pred ccCeEEEEEecCC--eEEEEECCCcEEEEECCCCeeeeeecCCCCe-EEEEEeeCC-CCEEEEEEcCCcEEEEeCCCCc-
Q 005352 354 SGEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFPHSNYV-TCVHFNPVD-DNYFISGSIDGKVRIWAVLSCH- 428 (701)
Q Consensus 354 ~~~I~~l~~s~~~--~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V-~~l~f~p~~-~~~l~sgs~dg~v~iwd~~~~~- 428 (701)
..++.-..+...+ .+++++ +....++.-+..-....+.. ..+ ....|+... .+-++... ++.++|..+..-+
T Consensus 651 ~~pv~L~~~~~~~~~~V~a~s-~rp~liy~~~~~l~~s~l~~-~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~ 727 (1158)
T 3ei3_A 651 TQPTVLRTFRSLSTTNVFACS-DRPTVIYSSNHKLVFSNVNL-KEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQK 727 (1158)
T ss_dssp SSCCEEEEEESSSCEEEEEES-SSCEEEEESSSSEEEEEBSS-SCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSSS
T ss_pred CCceEEEEEeeCCceeEEEEC-CCCEEEEEcCCceEEeccCh-HHhceEeccCcccCCCcEEEEc-CCceEEEEecccCC
Confidence 2344433343333 333333 33333343222211111112 223 233454311 23455444 5669998875432
Q ss_pred -EEEEecCCCcEEEEEEeeCCCeEEEEecCC-------------------------------------------------
Q 005352 429 -VVDWVDIRQIVTAVCYRPDGQGGIVGSMMG------------------------------------------------- 458 (701)
Q Consensus 429 -~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg------------------------------------------------- 458 (701)
.+..+.....+..++++|..+.++++..+.
T Consensus 728 ~~~~~ipL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s 807 (1158)
T 3ei3_A 728 LHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVH 807 (1158)
T ss_dssp EEEEEEECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEE
T ss_pred eeEEEEeCCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeE
Confidence 335566778899999999888776654321
Q ss_pred cEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEec---CCCCEEEEEE----------CCCcEEEEeCCcccee-ee
Q 005352 459 DCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLP---QDSSKVMVSC----------ADSQVRILQGPNVIGK-YK 524 (701)
Q Consensus 459 ~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p---~~~~~l~~~s----------~dg~I~iwd~~~~~~~-~~ 524 (701)
.++++|..+.+.... ..-.....+.+++... +...++++|+ ..|.|++|++.+.... ..
T Consensus 808 ~i~lidp~t~~~i~~-------~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~ 880 (1158)
T 3ei3_A 808 NLLIIDQHTFEVLHA-------HQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVA 880 (1158)
T ss_dssp EEEEEETTTCCEEEE-------EECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEE
T ss_pred EEEEEeCCCCeEEEE-------EeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEE
Confidence 123333322221110 0111223344554332 2347888887 3578999987532111 11
Q ss_pred cccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 525 GLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 525 ~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
.....+.+++++-- +| +|++|- ..+|++|++...+
T Consensus 881 ~~~v~g~v~al~~~-~g-~Lla~i-g~~l~vy~l~~~~ 915 (1158)
T 3ei3_A 881 EKEVKGAVYSMVEF-NG-KLLASI-NSTVRLYEWTTEK 915 (1158)
T ss_dssp EEEESSCEEEEEEE-TT-EEEEEE-TTEEEEEEECTTS
T ss_pred EEEcCCcCEEEeee-CC-EEEEEc-CCEEEEEECCCCc
Confidence 12246788887743 45 444443 4689999997654
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.25 E-value=0.15 Score=51.53 Aligned_cols=151 Identities=5% Similarity=-0.040 Sum_probs=92.6
Q ss_pred CeEEEEEecC-C-eEEEEECCCcEEEEECCCCeeeeee-cCCCCeEEEEEeeCCCCEEEEEE--cCCcEEEEeCCCCcEE
Q 005352 356 EILDLSWSKN-N-YLLSASIDKTVRLWRVGNDHCLRVF-PHSNYVTCVHFNPVDDNYFISGS--IDGKVRIWAVLSCHVV 430 (701)
Q Consensus 356 ~I~~l~~s~~-~-~l~s~s~dg~I~iWd~~~~~~~~~~-~h~~~V~~l~f~p~~~~~l~sgs--~dg~v~iwd~~~~~~~ 430 (701)
....+++.+. + .+++-...+.|.++++........+ ..-.....+++.| .+..|+.+. ..+.|...++......
T Consensus 80 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp-~~g~ly~td~~~~~~I~r~~~dG~~~~ 158 (318)
T 3sov_A 80 SPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDP-SSGFMYWTDWGEVPKIERAGMDGSSRF 158 (318)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEG-GGTEEEEEECSSSCEEEEEETTSCSCE
T ss_pred CccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeC-CCCEEEEEecCCCCEEEEEEcCCCCeE
Confidence 3456777764 4 4455556788999998765433333 2445678999998 444444444 2577888888654333
Q ss_pred EEe-cCCCcEEEEEEeeCCCeEEEE-ecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECC
Q 005352 431 DWV-DIRQIVTAVCYRPDGQGGIVG-SMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD 508 (701)
Q Consensus 431 ~~~-~~~~~i~~i~~sp~g~~l~~g-s~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~d 508 (701)
.+. ..-...+.++++|++..|+.+ +..+.|..+++........ .. .......++++. .+.++.+-...
T Consensus 159 ~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~----~~----~~~~~P~glav~--~~~lywtd~~~ 228 (318)
T 3sov_A 159 IIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAV----VK----GSLPHPFALTLF--EDILYWTDWST 228 (318)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE----EC----SCCSCEEEEEEE--TTEEEEEETTT
T ss_pred EEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEE----ec----CCCCCceEEEEe--CCEEEEEecCC
Confidence 332 223567899999977766665 4567899999875432211 11 122345667764 34555555556
Q ss_pred CcEEEEeCC
Q 005352 509 SQVRILQGP 517 (701)
Q Consensus 509 g~I~iwd~~ 517 (701)
+.|..++..
T Consensus 229 ~~V~~~~~~ 237 (318)
T 3sov_A 229 HSILACNKY 237 (318)
T ss_dssp TEEEEEETT
T ss_pred CeEEEEECC
Confidence 778777764
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.017 Score=61.53 Aligned_cols=195 Identities=9% Similarity=0.010 Sum_probs=116.4
Q ss_pred CeEEEEEecC---CeEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcC---C-cEEEEeCCCCc
Q 005352 356 EILDLSWSKN---NYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSID---G-KVRIWAVLSCH 428 (701)
Q Consensus 356 ~I~~l~~s~~---~~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~d---g-~v~iwd~~~~~ 428 (701)
....|+|.|+ +.|+.+...+.|+.+|..++..............++|++ +++++++-... . .+...+...+.
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~-dG~lyVad~~~~~~~~gv~~~~~~~~~ 218 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTL-NGDMVVVDDQSSDTNTGIYLFTRASGF 218 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECT-TCCEEEEECCSCTTSEEEEEECGGGTT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECC-CCCEEEEcCCCCcccceEEEEECCCCe
Confidence 4568899984 566666555899999998887776665556789999999 88855544321 1 13333322211
Q ss_pred E-EEEecCCCcEEEEEEee-CCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCC-EEEEE
Q 005352 429 V-VDWVDIRQIVTAVCYRP-DGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSS-KVMVS 505 (701)
Q Consensus 429 ~-~~~~~~~~~i~~i~~sp-~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~-~l~~~ 505 (701)
. ............++++| +|..+++-..++.|+.++..++...... ... .....-..++++| +++ ++++-
T Consensus 219 ~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~-~~~-----~~~~~~~~ia~dp-dG~~LYvad 291 (433)
T 4hw6_A 219 TERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEE-VMM-----DTKGSNFHIVWHP-TGDWAYIIY 291 (433)
T ss_dssp CCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEE-EEC-----SCCSSCEEEEECT-TSSEEEEEE
T ss_pred eccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEE-ecc-----CCCCCcccEEEeC-CCCEEEEEe
Confidence 1 01112234456788999 6655555556788999998866541111 110 0112234799999 556 55555
Q ss_pred ECCCcEEEEeCCccc------eeeecc-c------------CCCCeEEEEE---------ecCCCEEEEEeCCCcEEEEe
Q 005352 506 CADSQVRILQGPNVI------GKYKGL-R------------RSGNQLSACF---------TSDGKHIVSAGEDSNVYMWN 557 (701)
Q Consensus 506 s~dg~I~iwd~~~~~------~~~~~~-~------------~~~~v~~l~~---------s~dg~~l~sgs~Dg~I~iWd 557 (701)
...+.|+.++..... ..+.+. . .-.....+++ .++|.+.++-...+.|+.++
T Consensus 292 ~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~ 371 (433)
T 4hw6_A 292 NGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLT 371 (433)
T ss_dssp TTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEEC
T ss_pred CCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEEC
Confidence 667899998754211 111111 0 1234567888 66777666666677888887
Q ss_pred C
Q 005352 558 C 558 (701)
Q Consensus 558 ~ 558 (701)
.
T Consensus 372 ~ 372 (433)
T 4hw6_A 372 P 372 (433)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.05 E-value=0.091 Score=53.31 Aligned_cols=111 Identities=13% Similarity=0.183 Sum_probs=80.0
Q ss_pred cCeEEEEE--ecC-C--eEEEEECCCcEEEEEC-------CCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEE
Q 005352 355 GEILDLSW--SKN-N--YLLSASIDKTVRLWRV-------GNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIW 422 (701)
Q Consensus 355 ~~I~~l~~--s~~-~--~l~s~s~dg~I~iWd~-------~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iw 422 (701)
..+..+++ ++. + +++....+|.+..|++ .+.+.++.|...+.+-.+...+ ....|+.+-.+..|..|
T Consensus 128 ~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd-~~g~Lyv~eEd~GIw~~ 206 (355)
T 3amr_A 128 NEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADD-EYGRLYIAEEDEAIWKF 206 (355)
T ss_dssp SSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEET-TTTEEEEEETTTEEEEE
T ss_pred CCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcC-CCCeEEEecccceEEEE
Confidence 34555666 553 4 6888888999999988 2446778888888899999998 77888889888767666
Q ss_pred eCC-----CCcEEEEecCC---CcEEEEEEe--eCCC-eEEEEe-cCCcEEEEECC
Q 005352 423 AVL-----SCHVVDWVDIR---QIVTAVCYR--PDGQ-GGIVGS-MMGDCRFYNVS 466 (701)
Q Consensus 423 d~~-----~~~~~~~~~~~---~~i~~i~~s--p~g~-~l~~gs-~dg~v~i~d~~ 466 (701)
+.. +++++...... ..+..|++. ++++ +|++.+ .++...+||..
T Consensus 207 da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 207 SAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp ECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred eCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 754 34555544322 468888884 5556 666666 46789999986
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.29 Score=54.61 Aligned_cols=198 Identities=8% Similarity=-0.063 Sum_probs=128.6
Q ss_pred cCeEEEEEecCC-e-EEEEECCCcEEEEECCCCeeeeeecC-CCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEE
Q 005352 355 GEILDLSWSKNN-Y-LLSASIDKTVRLWRVGNDHCLRVFPH-SNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD 431 (701)
Q Consensus 355 ~~I~~l~~s~~~-~-l~s~s~dg~I~iWd~~~~~~~~~~~h-~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~ 431 (701)
..+..|+|.+.+ . +++-..++.|..+++........+.. ...+..+++.+..++++++-...+.|.+.++.......
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~ 116 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQV 116 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEE
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEE
Confidence 357789999865 4 44555678899999876544444432 24577899987456666666667889999987654333
Q ss_pred Ee-cCCCcEEEEEEeeCCCeEEEEec--CCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECC
Q 005352 432 WV-DIRQIVTAVCYRPDGQGGIVGSM--MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD 508 (701)
Q Consensus 432 ~~-~~~~~i~~i~~sp~g~~l~~gs~--dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~d 508 (701)
+. ..-.....|++.|....|+.... .+.|...++........ . .......++++.+.++.++++-...
T Consensus 117 l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l----~-----~~~~~P~GlalD~~~~~LY~aD~~~ 187 (628)
T 4a0p_A 117 LVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTL----V-----PNVGRANGLTIDYAKRRLYWTDLDT 187 (628)
T ss_dssp EECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEE----E-----CSCSSEEEEEEETTTTEEEEEETTT
T ss_pred EEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEE----E-----CCCCCcceEEEccccCEEEEEECCC
Confidence 33 33456789999996666666653 56788888776543211 1 1235678999999555566666668
Q ss_pred CcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCC
Q 005352 509 SQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEE 563 (701)
Q Consensus 509 g~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~ 563 (701)
+.|..+|+........ .........+++.. +...++-...+.|...|..+++.
T Consensus 188 ~~I~~~d~dG~~~~v~-~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~ 240 (628)
T 4a0p_A 188 NLIESSNMLGLNREVI-ADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQN 240 (628)
T ss_dssp TEEEEEETTSCSCEEE-EECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCS
T ss_pred CEEEEEcCCCCceEEe-eccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCc
Confidence 8999999764322221 12334566788765 34444545578899888776653
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.092 Score=60.15 Aligned_cols=182 Identities=6% Similarity=-0.085 Sum_probs=117.4
Q ss_pred CCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCC----cEEEEec-CCCcEEEEEEeeC
Q 005352 373 IDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSC----HVVDWVD-IRQIVTAVCYRPD 447 (701)
Q Consensus 373 ~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~----~~~~~~~-~~~~i~~i~~sp~ 447 (701)
....|+..++..............+..|+|.+..+.++++-...+.|+.+++... ....... ....+..|++.+.
T Consensus 402 n~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~ 481 (791)
T 3m0c_C 402 NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 481 (791)
T ss_dssp CBSSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT
T ss_pred cccceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeec
Confidence 3456888888877666666666778899999844555556556678999988753 2222232 3455778999987
Q ss_pred CCeEEE-EecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECC-CcEEEEeCCccceeeec
Q 005352 448 GQGGIV-GSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD-SQVRILQGPNVIGKYKG 525 (701)
Q Consensus 448 g~~l~~-gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~d-g~I~iwd~~~~~~~~~~ 525 (701)
++.|+. -...+.|.+.++........ +. .......+|++.|..+.++++-... +.|.+.++.........
T Consensus 482 ~~~LY~tD~~~~~I~v~~ldG~~~~~l----~~----~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv 553 (791)
T 3m0c_C 482 HSNIYWTDSVLGTVSVADTKGVKRKTL----FR----ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV 553 (791)
T ss_dssp TTEEEEEETTTTEEEEEETTSSSEEEE----EE----CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEE
T ss_pred CCcEEEEecCCCeEEEEeCCCCeEEEE----Ee----CCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEE
Confidence 755555 45578899999986543221 11 1224578999999545555554333 78888887644333322
Q ss_pred ccCCCCeEEEEEecCCCEEEEEe-CCCcEEEEeCCCCC
Q 005352 526 LRRSGNQLSACFTSDGKHIVSAG-EDSNVYMWNCIGHE 562 (701)
Q Consensus 526 ~~~~~~v~~l~~s~dg~~l~sgs-~Dg~I~iWd~~~~~ 562 (701)
.........|++++.+..|+.+. ....|...+++...
T Consensus 554 ~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~ 591 (791)
T 3m0c_C 554 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN 591 (791)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred eCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCc
Confidence 22446789999998777776664 45678888886654
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.022 Score=57.27 Aligned_cols=166 Identities=5% Similarity=0.036 Sum_probs=108.3
Q ss_pred CCCCeEEEEEeeCCCCEEEEEE-cCCcEEEEeCCCCcEEEE-ecC-------CCcEEEEEE---eeCCCeEEEEec----
Q 005352 393 HSNYVTCVHFNPVDDNYFISGS-IDGKVRIWAVLSCHVVDW-VDI-------RQIVTAVCY---RPDGQGGIVGSM---- 456 (701)
Q Consensus 393 h~~~V~~l~f~p~~~~~l~sgs-~dg~v~iwd~~~~~~~~~-~~~-------~~~i~~i~~---sp~g~~l~~gs~---- 456 (701)
...+..+++|++ ....|..++ ..++|..||...+..... ... ...+..+.| .|+++.+++...
T Consensus 11 ~~~yPE~~~wd~-~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af 89 (334)
T 2p9w_A 11 KNLTPEDTIYDR-TRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSF 89 (334)
T ss_dssp TTCCCSCEEEET-TTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTT
T ss_pred cccCCcCccCcC-CCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccc
Confidence 345667889998 455555555 789999999986654433 211 114689999 688777776432
Q ss_pred ---------CCcEEEEECC---CCeeeeeeeEEeecc-----cCCCCCCeeEEEEecCCCCEEEEEECC-CcEEEEeCCc
Q 005352 457 ---------MGDCRFYNVS---DNHLELDAEICVHSK-----KKAPCKRITGFQFLPQDSSKVMVSCAD-SQVRILQGPN 518 (701)
Q Consensus 457 ---------dg~v~i~d~~---~~~~~~~~~~~~~~~-----~~~~~~~i~~l~~~p~~~~~l~~~s~d-g~I~iwd~~~ 518 (701)
+..|..||+. +++......+..... ..........++..+ +++..++++.. +.|..++...
T Consensus 90 ~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~-~GnaYVt~s~~~~~I~rV~pdG 168 (334)
T 2p9w_A 90 NFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDR-DGNSYVAFALGMPAIARVSADG 168 (334)
T ss_dssp CTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECT-TSCEEEEEEESSCEEEEECTTS
T ss_pred cccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECC-CCCEEEeCCCCCCeEEEEeCCC
Confidence 5779999998 665543322111000 000123478899998 78888888888 8887777653
Q ss_pred c-ceeeec----ccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 005352 519 V-IGKYKG----LRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIG 560 (701)
Q Consensus 519 ~-~~~~~~----~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~ 560 (701)
. ...+.. .......+.++++|+|+.|++....|.|..+|+..
T Consensus 169 ~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 169 KTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp CCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred CEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 2 111211 11223467999999999999887799999999884
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=96.91 E-value=0.51 Score=49.01 Aligned_cols=240 Identities=8% Similarity=0.094 Sum_probs=153.2
Q ss_pred EEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEc
Q 005352 256 MKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVF 335 (701)
Q Consensus 256 l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (701)
.-.+|..+.||-=. ..++.|+|+++.+++..+...+
T Consensus 71 AIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e------------------------------------------- 106 (494)
T 1bpo_A 71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD------------------------------------------- 106 (494)
T ss_dssp EEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-------------------------------------------
T ss_pred eeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-------------------------------------------
Confidence 44577777776654 5789999999887665554322
Q ss_pred CCccccccCCCeEEEcCCccCeEEEEEecCCeEEEEECCCcEEEEECCC-Ceeeeeec-----CCCCeEEEEEeeCCCCE
Q 005352 336 PPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGN-DHCLRVFP-----HSNYVTCVHFNPVDDNY 409 (701)
Q Consensus 336 ~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~l~s~s~dg~I~iWd~~~-~~~~~~~~-----h~~~V~~l~f~p~~~~~ 409 (701)
.|.-=+|-.+..|+-.+ +..|+-|++.. ..+++.|. ....|..-..++ +.++
T Consensus 107 --------------------~VvfWkWis~~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~-~~kW 164 (494)
T 1bpo_A 107 --------------------DVTFWKWISLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDA-KQKW 164 (494)
T ss_dssp --------------------CCCEEEEEETTEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECT-TSSE
T ss_pred --------------------CceEEEecCCCeEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECC-CCCe
Confidence 33344565555333333 45799999864 45666665 245566677777 7777
Q ss_pred EEEEEc-------CCcEEEEeCCCCcEEEEecCCCcEEEEEEeeC---CCeEEEEec---CCcEEEEECCCC---eeee-
Q 005352 410 FISGSI-------DGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPD---GQGGIVGSM---MGDCRFYNVSDN---HLEL- 472 (701)
Q Consensus 410 l~sgs~-------dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~---g~~l~~gs~---dg~v~i~d~~~~---~~~~- 472 (701)
++..+. .|.+.+|....+......+|......+.+.-+ .+.++.+.. .+++++.++... ....
T Consensus 165 ~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~ 244 (494)
T 1bpo_A 165 LLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFP 244 (494)
T ss_dssp EEEEEEEEETTEEEEEEEEEESTTCCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCC
T ss_pred EEEEeecccCCcccceEEEeeccccccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCcc
Confidence 665442 47789999987765555555433322222111 012222322 278999998543 1111
Q ss_pred eeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCc
Q 005352 473 DAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSN 552 (701)
Q Consensus 473 ~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~ 552 (701)
.....+.........-..++..++ ....+..-+.-|.|++||+.+....|...-....|...+-+....=++.....|.
T Consensus 245 kk~vdv~fppe~~~DFPvamqvs~-kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~Gq 323 (494)
T 1bpo_A 245 KKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQ 323 (494)
T ss_dssp CEEEECCCCTTSTTCCEEEEEEET-TTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCE
T ss_pred ceeeeeeCCcccccCceeEEEecc-cCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCce
Confidence 112222222233445566788888 6788999999999999999999999887767778877777766666777778999
Q ss_pred EEEEeCCCCC
Q 005352 553 VYMWNCIGHE 562 (701)
Q Consensus 553 I~iWd~~~~~ 562 (701)
|.--.++...
T Consensus 324 Vl~v~v~e~~ 333 (494)
T 1bpo_A 324 VLSVCVEEEN 333 (494)
T ss_dssp EEEEEECTTT
T ss_pred EEEEEEcccc
Confidence 8888887665
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0037 Score=71.04 Aligned_cols=199 Identities=8% Similarity=-0.025 Sum_probs=120.0
Q ss_pred cCeEEEEEecCC-eEEEE-ECCCcEEEEECCC----Ceeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCC
Q 005352 355 GEILDLSWSKNN-YLLSA-SIDKTVRLWRVGN----DHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSC 427 (701)
Q Consensus 355 ~~I~~l~~s~~~-~l~s~-s~dg~I~iWd~~~----~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~ 427 (701)
..+..|+|.+.+ .|+.+ ...+.|+.+++.. ......+. .-.....|++.+..++++++-...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 456688998865 55444 4567899999875 22222222 12345678887645666666566788999998876
Q ss_pred cEEEEecC-CCcEEEEEEeeCCCeEEEEec--CCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEE
Q 005352 428 HVVDWVDI-RQIVTAVCYRPDGQGGIVGSM--MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMV 504 (701)
Q Consensus 428 ~~~~~~~~-~~~i~~i~~sp~g~~l~~gs~--dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~ 504 (701)
....+... ......|+++|.+..|+.+.. .+.|..+++....... + .........+|++.|.++.++++
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~-----l---~~~~l~~PnGlavd~~~~~LY~a 557 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS-----L---VTENIQWPNGITLDLLSGRLYWV 557 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCE-----E---SCSSCSSCCCEEECTTTCCEEEE
T ss_pred ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeE-----E---EeCCCCCccEEEEeccCCEEEEE
Confidence 55444332 245678899997666665543 2678877776433211 0 01122456789999966677777
Q ss_pred EECCCcEEEEeCCccce-eeec-ccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 505 SCADSQVRILQGPNVIG-KYKG-LRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 505 ~s~dg~I~iwd~~~~~~-~~~~-~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
-+..+.|..+++..... .+.. .........+++..+ .++++....+.|..++..+++
T Consensus 558 D~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~ 616 (699)
T 1n7d_A 558 DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGS 616 (699)
T ss_dssp ETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEE
T ss_pred ecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCC
Confidence 77788999999863221 1211 112233445666544 444555567889999876654
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.38 Score=49.33 Aligned_cols=190 Identities=12% Similarity=0.041 Sum_probs=93.6
Q ss_pred cCeEEEEEecC----CeEEEE-ECC-----CcEEEEECCCCe-----e-eeeecC----CCCeEEEEEeeCCCCEEEEEE
Q 005352 355 GEILDLSWSKN----NYLLSA-SID-----KTVRLWRVGNDH-----C-LRVFPH----SNYVTCVHFNPVDDNYFISGS 414 (701)
Q Consensus 355 ~~I~~l~~s~~----~~l~s~-s~d-----g~I~iWd~~~~~-----~-~~~~~h----~~~V~~l~f~p~~~~~l~sgs 414 (701)
.....|+++|+ +.|+.+ ... ..|..|+...+. . +..+.. ......++|.| ++.++++.+
T Consensus 75 ~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~G 153 (352)
T 2ism_A 75 SGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGP-DGMLYVTTG 153 (352)
T ss_dssp CSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECT-TSCEEEECC
T ss_pred CCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECC-CCCEEEEEC
Confidence 45678899997 444333 322 567778776431 1 111221 12346899999 887777643
Q ss_pred c-------------CCcEEEEeCCCC--------------cEEEEecCCCcEEEEEEee-CCCeEEEEecCCcE------
Q 005352 415 I-------------DGKVRIWAVLSC--------------HVVDWVDIRQIVTAVCYRP-DGQGGIVGSMMGDC------ 460 (701)
Q Consensus 415 ~-------------dg~v~iwd~~~~--------------~~~~~~~~~~~i~~i~~sp-~g~~l~~gs~dg~v------ 460 (701)
. .|.|.-++.... ..+...++ .....++|+| ++..+++-...+.+
T Consensus 154 ~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~d 232 (352)
T 2ism_A 154 EVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHD 232 (352)
T ss_dssp CTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCC
T ss_pred CCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCe
Confidence 2 145655665431 01111122 3367789999 55544443322221
Q ss_pred EEEECCCCeee----eee-----eEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccce------eeec
Q 005352 461 RFYNVSDNHLE----LDA-----EICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIG------KYKG 525 (701)
Q Consensus 461 ~i~d~~~~~~~----~~~-----~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~------~~~~ 525 (701)
.+.-+..+... ... ..........+.....+++|. ++.++++....+.|...+...... ....
T Consensus 233 ei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~ap~G~~~~--~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~ 310 (352)
T 2ism_A 233 EVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWPQGFPPGNLAFF--RGDLYVAGLRGQALLRLVLEGERGRWRVLRVETA 310 (352)
T ss_dssp EEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCEEEEEEE--TTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEE
T ss_pred EEEEeccCCcCCCCcccCCCCCCCCcCCeEecCCCCCCcceEEE--CCEEEEEECCCCEEEEEEECCCCcceeecchhee
Confidence 12222222100 000 000000000122345677773 456666666677787776653221 1111
Q ss_pred ccCCCCeEEEEEecCCCEEEEEe
Q 005352 526 LRRSGNQLSACFTSDGKHIVSAG 548 (701)
Q Consensus 526 ~~~~~~v~~l~~s~dg~~l~sgs 548 (701)
......+..+++.|||.+.++..
T Consensus 311 ~~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 311 LSGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp EESSCCEEEEEECTTSCEEEEEC
T ss_pred cccCCCeeEEEECCCCcEEEEEe
Confidence 12346789999999998776654
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.038 Score=59.30 Aligned_cols=158 Identities=12% Similarity=0.094 Sum_probs=101.0
Q ss_pred CeEEEEEeeC-CCCEEEEEEcCCcEEEEeCCCCcEEEEecCC----CcEEEEEE-------eeCCCeEEEEecCC-c---
Q 005352 396 YVTCVHFNPV-DDNYFISGSIDGKVRIWAVLSCHVVDWVDIR----QIVTAVCY-------RPDGQGGIVGSMMG-D--- 459 (701)
Q Consensus 396 ~V~~l~f~p~-~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~----~~i~~i~~-------sp~g~~l~~gs~dg-~--- 459 (701)
....|+|.|. .++++++-...+.|++.|+.++.+..+.... .....++| +++++.|+++...+ .
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 4778999983 3555565555577999999988877665432 25899999 99999777776654 2
Q ss_pred ---EEEEECCC-Ceeee--e-eeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCC-------ccce----
Q 005352 460 ---CRFYNVSD-NHLEL--D-AEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGP-------NVIG---- 521 (701)
Q Consensus 460 ---v~i~d~~~-~~~~~--~-~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~-------~~~~---- 521 (701)
|.+++... +.... . ..+. . .....+++++|.++.++++-..++.|+.+|.. +...
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~--~-----~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~ 292 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIA--A-----YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPI 292 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEE--E-----ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCB
T ss_pred CceEEEEecCCCCceeecccceeec--c-----CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccc
Confidence 55565333 12210 0 0111 1 12345778899667777777788899999976 2221
Q ss_pred ---------eeecccCCCCeEEEEEecCCCEEEEE-eCCCcEEEEeCCC
Q 005352 522 ---------KYKGLRRSGNQLSACFTSDGKHIVSA-GEDSNVYMWNCIG 560 (701)
Q Consensus 522 ---------~~~~~~~~~~v~~l~~s~dg~~l~sg-s~Dg~I~iWd~~~ 560 (701)
.+...........++|+|+|++|+.+ +....|+.++++.
T Consensus 293 ~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg 341 (496)
T 3kya_A 293 VKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDE 341 (496)
T ss_dssp GGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred ccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCC
Confidence 11111233456899999999965544 5667888876543
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=96.74 E-value=0.53 Score=48.86 Aligned_cols=178 Identities=9% Similarity=0.108 Sum_probs=115.7
Q ss_pred CCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCC-cEEEEecC-----CCcEEEEEEeeC
Q 005352 374 DKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSC-HVVDWVDI-----RQIVTAVCYRPD 447 (701)
Q Consensus 374 dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~-~~~~~~~~-----~~~i~~i~~sp~ 447 (701)
..++.|+|+++.+.++.+.....|.--.|-. .+.|+..+ +..|+-|++... ..++.+.. ...|..-..+++
T Consensus 85 g~~lQiFnle~K~klks~~~~e~VvfWkWis--~~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~ 161 (494)
T 1bpo_A 85 GKTLQIFNIEMKSKMKAHTMTDDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAK 161 (494)
T ss_dssp TTEEEEEETTTTEEEEEEECSSCCCEEEEEE--TTEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTT
T ss_pred CCeEEEEchHHhhhhcceecCCCceEEEecC--CCeEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCC
Confidence 6899999999999999999888888888874 56666665 668999999642 33343332 345777778888
Q ss_pred CCeEEEEec-------CCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEe--cCCCCEEEEEEC---CCcEEEEe
Q 005352 448 GQGGIVGSM-------MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFL--PQDSSKVMVSCA---DSQVRILQ 515 (701)
Q Consensus 448 g~~l~~gs~-------dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~--p~~~~~l~~~s~---dg~I~iwd 515 (701)
.++++..+- .|.+.+|..+.+..+. ..+|......+.+. +....+++.+.. .++++|.+
T Consensus 162 ~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~---------ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~E 232 (494)
T 1bpo_A 162 QKWLLLTGISAQQNRVVGAMQLYSVDRKVSQP---------IEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIE 232 (494)
T ss_dssp SSEEEEEEEEEETTEEEEEEEEEESTTCCEEE---------ECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEE
T ss_pred CCeEEEEeecccCCcccceEEEeeccccccch---------heeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEE
Confidence 998876432 4678899988654321 11111111111111 000122333332 37899998
Q ss_pred CCcc---ceee---------ecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCC
Q 005352 516 GPNV---IGKY---------KGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEE 563 (701)
Q Consensus 516 ~~~~---~~~~---------~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~ 563 (701)
+... ...| .......-..++..++....+..-+.-|.|++||+.++..
T Consensus 233 i~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~ 292 (494)
T 1bpo_A 233 VGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTC 292 (494)
T ss_dssp CSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCE
T ss_pred cCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEeccccee
Confidence 7532 1111 1112345567889999999999999999999999999874
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.46 Score=48.79 Aligned_cols=67 Identities=13% Similarity=0.127 Sum_probs=40.1
Q ss_pred CCeeEEEEecC------CCCEEEEEECCCcEEEEeCCccc--eeeecc-cCCCCeEEEEEecCCCEEEEEe-CCCcE
Q 005352 487 KRITGFQFLPQ------DSSKVMVSCADSQVRILQGPNVI--GKYKGL-RRSGNQLSACFTSDGKHIVSAG-EDSNV 553 (701)
Q Consensus 487 ~~i~~l~~~p~------~~~~l~~~s~dg~I~iwd~~~~~--~~~~~~-~~~~~v~~l~~s~dg~~l~sgs-~Dg~I 553 (701)
....++.|... ++.++++....+.|...++.... ...... .....+..+++.|||.+.++.. .+|.|
T Consensus 271 ~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td~~~g~I 347 (353)
T 2g8s_A 271 PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSGEL 347 (353)
T ss_dssp CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEECSTTEEE
T ss_pred cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEEeCCCCEE
Confidence 35677888642 35666666667788777765321 111111 1245789999999998666543 34443
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.26 Score=54.84 Aligned_cols=200 Identities=4% Similarity=-0.068 Sum_probs=119.9
Q ss_pred cCeEEEEEecCC-eEEEE-ECCCcEEEEECCCCee-eeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEE
Q 005352 355 GEILDLSWSKNN-YLLSA-SIDKTVRLWRVGNDHC-LRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV 430 (701)
Q Consensus 355 ~~I~~l~~s~~~-~l~s~-s~dg~I~iWd~~~~~~-~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~ 430 (701)
.....|+|++.+ .|+-+ ...+.|..+++..... ...+. .-.....+++.+..++++++-...+.|.+.++......
T Consensus 40 ~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~ 119 (619)
T 3s94_A 40 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK 119 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred CceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEE
Confidence 456788999855 55444 4567888888876532 22333 22578899999845556666666789999999866543
Q ss_pred EEe-cCCCcEEEEEEeeCCCeEEEEec--CCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEEC
Q 005352 431 DWV-DIRQIVTAVCYRPDGQGGIVGSM--MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCA 507 (701)
Q Consensus 431 ~~~-~~~~~i~~i~~sp~g~~l~~gs~--dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~ 507 (701)
.+. ..-.....|++.|.+..|+.... .+.|...++........ . ........++++.+.++.++++-..
T Consensus 120 ~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l----~----~~~~~~P~Glald~~~~~LY~aD~~ 191 (619)
T 3s94_A 120 VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFII----I----NSEIYWPNGLTLDYEEQKLYWADAK 191 (619)
T ss_dssp EEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEE----E----CSSCSSEEEEEEETTTTEEEEEETT
T ss_pred EEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEE----E----eCCCCCCcEEEEEccCCEEEEEeCC
Confidence 333 33455788999997666666653 35677777765432211 0 1123567899999865666666666
Q ss_pred CCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCC
Q 005352 508 DSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEE 563 (701)
Q Consensus 508 dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~ 563 (701)
.+.|..+|...................+++..+ ...++-...+.|...|..+++.
T Consensus 192 ~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~ 246 (619)
T 3s94_A 192 LNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEG 246 (619)
T ss_dssp TCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCCC
T ss_pred CCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcc
Confidence 788999887642222111111223346666555 3334444667899999877764
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.61 Score=47.22 Aligned_cols=151 Identities=11% Similarity=0.043 Sum_probs=85.5
Q ss_pred ccCeEEEEEecCCeEEEEECCCcEEE-EEC--CCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEE
Q 005352 354 SGEILDLSWSKNNYLLSASIDKTVRL-WRV--GNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV 430 (701)
Q Consensus 354 ~~~I~~l~~s~~~~l~s~s~dg~I~i-Wd~--~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~ 430 (701)
...+..+.+.+++.++..+..+.+.. +|- .+-+.+. ......+..+.+.+ ++.++ .++.+|.+++.+...++.-
T Consensus 162 ~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~-~~~~~~~~~~~~~~-~g~~~-~~~~~G~~~~s~~D~G~tW 238 (327)
T 2xbg_A 162 IGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHN-RTTSRRLHNMGFTP-DGRLW-MIVNGGKIAFSDPDNSENW 238 (327)
T ss_dssp CCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEE-CCSSSCEEEEEECT-TSCEE-EEETTTEEEEEETTEEEEE
T ss_pred CcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECC-CCCCCccceeEECC-CCCEE-EEeCCceEEEecCCCCCee
Confidence 34677888988884444555555544 342 2233332 23456788999988 66655 4556788777653334332
Q ss_pred EEec-----CCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEE
Q 005352 431 DWVD-----IRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVS 505 (701)
Q Consensus 431 ~~~~-----~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~ 505 (701)
.... ....+.++.+.+++..++++. +|.+ ++....++.- ............+..+.|.+ ...++++
T Consensus 239 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW-----~~~~~~~~~~~~~~~v~~~~--~~~~~~~ 309 (327)
T 2xbg_A 239 GELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTW-----QQDVDVKKVPSNFYKILFFS--PDQGFIL 309 (327)
T ss_dssp CCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSC-----EECGGGTTSSSCCCEEEEEE--TTEEEEE
T ss_pred EeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCccc-----EEcCccCCCCCCeEEEEEEC--CCceEEE
Confidence 2221 123588999998877666654 6666 3444433211 00010111124567788865 3457777
Q ss_pred ECCCcEEEEeC
Q 005352 506 CADSQVRILQG 516 (701)
Q Consensus 506 s~dg~I~iwd~ 516 (701)
+.+|.|.-++.
T Consensus 310 G~~G~i~~~~~ 320 (327)
T 2xbg_A 310 GQKGILLRYVT 320 (327)
T ss_dssp CSTTEEEEECC
T ss_pred cCCceEEEEcC
Confidence 88898877664
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=96.56 E-value=0.14 Score=53.09 Aligned_cols=150 Identities=13% Similarity=0.137 Sum_probs=96.9
Q ss_pred CCCEEEEEEcCCcEEEEeCCCCcEEEEecCC-----CcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeee-------
Q 005352 406 DDNYFISGSIDGKVRIWAVLSCHVVDWVDIR-----QIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELD------- 473 (701)
Q Consensus 406 ~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~-----~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~------- 473 (701)
++..++.+- ++.||.-++......+..... ..|..+..+|+|++|++.+. ..|.+..+..+.....
T Consensus 31 n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~ 108 (452)
T 3pbp_A 31 NGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDA 108 (452)
T ss_dssp TTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHT
T ss_pred CCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccccc
Confidence 666666654 578888887744323333222 25788999999999998865 6899998884321111
Q ss_pred ---eeEEeecccCCCCCCeeEEEEecCC--CCEEEEEECCCcEEEEeCCccce---ee-------ecccCCCCeEEEEEe
Q 005352 474 ---AEICVHSKKKAPCKRITGFQFLPQD--SSKVMVSCADSQVRILQGPNVIG---KY-------KGLRRSGNQLSACFT 538 (701)
Q Consensus 474 ---~~~~~~~~~~~~~~~i~~l~~~p~~--~~~l~~~s~dg~I~iwd~~~~~~---~~-------~~~~~~~~v~~l~~s 538 (701)
..+.+.........+|..+.|+|-. +..|++-..|+.|++||+..... .+ ........|.+++|.
T Consensus 109 ~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg 188 (452)
T 3pbp_A 109 FQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFS 188 (452)
T ss_dssp TEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEEC
T ss_pred cceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEc
Confidence 0111111112235789999999953 45899999999999999874110 11 111123678899999
Q ss_pred cCCCEEEEEe--CCCcEEEEe
Q 005352 539 SDGKHIVSAG--EDSNVYMWN 557 (701)
Q Consensus 539 ~dg~~l~sgs--~Dg~I~iWd 557 (701)
+++-.|...+ ..|.|+-.-
T Consensus 189 ~~~lTLYvl~~t~~GDIYAlc 209 (452)
T 3pbp_A 189 KDGLTLYCLNTTEGGDIFAFY 209 (452)
T ss_dssp TTSSCEEEEECTTSCEEEEES
T ss_pred CCCcEEEEEecCCCCCEEEEC
Confidence 9887666654 788887654
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=96.55 E-value=0.8 Score=46.32 Aligned_cols=191 Identities=9% Similarity=0.041 Sum_probs=102.6
Q ss_pred cCeEEEEEecCCeEEEEECCCcEEEEECCCCeeeeee--cCCCCeEEEEEeeCCCCEEEEEEcCCcEE-EEeC--CCCcE
Q 005352 355 GEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVF--PHSNYVTCVHFNPVDDNYFISGSIDGKVR-IWAV--LSCHV 429 (701)
Q Consensus 355 ~~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~--~h~~~V~~l~f~p~~~~~l~sgs~dg~v~-iwd~--~~~~~ 429 (701)
..+..|.+.+++.++.++.++.|..- ...++.-... .....+..+++.| ++.+++.+. +|.+. -+|- .+-+.
T Consensus 122 ~~~~~i~~~~~~~~~~~~~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~~~-~~~~~~~g~-~G~~~~S~d~gG~tW~~ 198 (327)
T 2xbg_A 122 GSPRLIKALGNGSAEMITNVGAIYRT-KDSGKNWQALVQEAIGVMRNLNRSP-SGEYVAVSS-RGSFYSTWEPGQTAWEP 198 (327)
T ss_dssp SCEEEEEEEETTEEEEEETTCCEEEE-SSTTSSEEEEECSCCCCEEEEEECT-TSCEEEEET-TSSEEEEECTTCSSCEE
T ss_pred CCeEEEEEECCCCEEEEeCCccEEEE-cCCCCCCEEeecCCCcceEEEEEcC-CCcEEEEEC-CCcEEEEeCCCCCceeE
Confidence 45677877777755555556654321 2223322222 2456789999998 777776654 45443 3442 22222
Q ss_pred EEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeeccc-CCCCCCeeEEEEecCCCCEEEEEECC
Q 005352 430 VDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKK-KAPCKRITGFQFLPQDSSKVMVSCAD 508 (701)
Q Consensus 430 ~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~~p~~~~~l~~~s~d 508 (701)
+. ......+..+.+.++++.+ +++.+|.+++.+...++. .. ..... ......+..+.+.+ ++.+++ ++.+
T Consensus 199 ~~-~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~t-W~----~~~~~~~~~~~~~~~v~~~~-~~~~~~-~g~~ 269 (327)
T 2xbg_A 199 HN-RTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSEN-WG----ELLSPLRRNSVGFLDLAYRT-PNEVWL-AGGA 269 (327)
T ss_dssp EE-CCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEE-EC----CCBCTTSSCCSCEEEEEESS-SSCEEE-EEST
T ss_pred CC-CCCCCccceeEECCCCCEE-EEeCCceEEEecCCCCCe-eE----eccCCcccCCcceEEEEecC-CCEEEE-EeCC
Confidence 22 2345678899999988655 445678777664221211 10 00000 11223578888887 445444 4557
Q ss_pred CcEEEE-eCC-ccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 005352 509 SQVRIL-QGP-NVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNC 558 (701)
Q Consensus 509 g~I~iw-d~~-~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~ 558 (701)
+.|..- |.. +.............+.++.|.+++ .++.++.+|.|.-++-
T Consensus 270 g~i~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 270 GALLCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLRYVT 320 (327)
T ss_dssp TCEEEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEEECC
T ss_pred CeEEEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEEEcC
Confidence 766432 221 221111111123567888887655 4666778998877763
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.18 Score=50.35 Aligned_cols=185 Identities=16% Similarity=0.183 Sum_probs=96.1
Q ss_pred CC-eEEEEECC-----CcEEEEECCCCeeeeeec--CCCCeEEEEEeeCCCCEEEEEEcCC-----cEEEEeCCCCcEEE
Q 005352 365 NN-YLLSASID-----KTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSIDG-----KVRIWAVLSCHVVD 431 (701)
Q Consensus 365 ~~-~l~s~s~d-----g~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~~~~~l~sgs~dg-----~v~iwd~~~~~~~~ 431 (701)
++ .++.|+.+ ..+.+||..+.+-...-. ....-.+++.. ++.+++.|+.++ .+.+||+.+.+-..
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~ 138 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFH 138 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEee
Confidence 44 55556544 358889988876443322 21111222222 667778887653 47889988876544
Q ss_pred EecCCCc--EEEEEEeeCCCeEEEEecC-------CcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEE
Q 005352 432 WVDIRQI--VTAVCYRPDGQGGIVGSMM-------GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKV 502 (701)
Q Consensus 432 ~~~~~~~--i~~i~~sp~g~~l~~gs~d-------g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l 502 (701)
......+ -.+++. .+++.++.|+.+ ..+.+||+.++.......+ ....... ++... ++.++
T Consensus 139 ~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~------p~~r~~~-~~~~~--~~~iy 208 (302)
T 2xn4_A 139 VAPMNTRRSSVGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEM------STRRSGA-GVGVL--NNLLY 208 (302)
T ss_dssp ECCCSSCCBSCEEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCC------SSCCBSC-EEEEE--TTEEE
T ss_pred cCCCCCcccCceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCC------ccccccc-cEEEE--CCEEE
Confidence 3322211 112222 366677776542 4588999988876432111 1111111 22222 46777
Q ss_pred EEEECC-----CcEEEEeCCccceee-ecccCCCCeEEEEEecCCCEEEEEeCCC-----cEEEEeCCCCC
Q 005352 503 MVSCAD-----SQVRILQGPNVIGKY-KGLRRSGNQLSACFTSDGKHIVSAGEDS-----NVYMWNCIGHE 562 (701)
Q Consensus 503 ~~~s~d-----g~I~iwd~~~~~~~~-~~~~~~~~v~~l~~s~dg~~l~sgs~Dg-----~I~iWd~~~~~ 562 (701)
+.|+.+ ..+.+||..+..-.. ........-.+++ ..++++++.|+.++ .+.+||+.+.+
T Consensus 209 v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~-~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 209 AVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVC-AVNGLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp EECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE-EETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred EECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEE-EECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence 777764 468889986432111 1111111111122 23667777777553 47888876653
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=96.30 E-value=0.6 Score=47.89 Aligned_cols=189 Identities=11% Similarity=0.029 Sum_probs=96.0
Q ss_pred cCeEEEEEecC----CeEEEEEC----C----CcEEEEECCCC-------eee-eeec--CCCCeEEEEEeeCCCCEEEE
Q 005352 355 GEILDLSWSKN----NYLLSASI----D----KTVRLWRVGND-------HCL-RVFP--HSNYVTCVHFNPVDDNYFIS 412 (701)
Q Consensus 355 ~~I~~l~~s~~----~~l~s~s~----d----g~I~iWd~~~~-------~~~-~~~~--h~~~V~~l~f~p~~~~~l~s 412 (701)
.....|+++|+ +.|+.+.. + ..|..|+.... +.+ ..+. .......|+|.| ++.++++
T Consensus 73 ~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~p-DG~Lyvt 151 (354)
T 3a9g_A 73 AGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGP-DGMLYIT 151 (354)
T ss_dssp CSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECT-TSCEEEE
T ss_pred CceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECC-CCcEEEE
Confidence 45678899987 44443332 3 56777776543 111 1122 112356799999 8887776
Q ss_pred EEc-------------CCcEEEEeCCCC---------cEEEEecCCCcEEEEEEee-CCCeEEEEecCC---cEEEEECC
Q 005352 413 GSI-------------DGKVRIWAVLSC---------HVVDWVDIRQIVTAVCYRP-DGQGGIVGSMMG---DCRFYNVS 466 (701)
Q Consensus 413 gs~-------------dg~v~iwd~~~~---------~~~~~~~~~~~i~~i~~sp-~g~~l~~gs~dg---~v~i~d~~ 466 (701)
.+. .|.|.-++.... ..+...++ .....++|+| +++.+++-...+ .|.+..
T Consensus 152 ~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~-- 228 (354)
T 3a9g_A 152 TGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIWSYGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIIL-- 228 (354)
T ss_dssp CCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEEECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEEC--
T ss_pred ECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEEEcc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEec--
Confidence 432 245555555432 01122222 2356799999 555444432221 133322
Q ss_pred CCeee----------e-eeeEEeecccCCCCCCeeEEEEec------CCCCEEEEEECCCcEEEEeCCccce---eeecc
Q 005352 467 DNHLE----------L-DAEICVHSKKKAPCKRITGFQFLP------QDSSKVMVSCADSQVRILQGPNVIG---KYKGL 526 (701)
Q Consensus 467 ~~~~~----------~-~~~~~~~~~~~~~~~~i~~l~~~p------~~~~~l~~~s~dg~I~iwd~~~~~~---~~~~~ 526 (701)
.+... . ........ .........++.|.. .++.++++....+.|...++..... .....
T Consensus 229 ~G~nyGwp~~~g~~~~~~~~~p~~~-~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~ 307 (354)
T 3a9g_A 229 KGGNYGWPLATGKAGRGEFVDPVID-TGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFF 307 (354)
T ss_dssp TTCBCCTTTCCSCCCCTTSCCCSEE-CTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEEC
T ss_pred CCCcCCCCcccCCCCCCCCcCCEee-cCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeec
Confidence 11100 0 00000000 001234577888842 2456666666677888888764211 11111
Q ss_pred -cCCCCeEEEEEecCCCEEEEEe
Q 005352 527 -RRSGNQLSACFTSDGKHIVSAG 548 (701)
Q Consensus 527 -~~~~~v~~l~~s~dg~~l~sgs 548 (701)
.....+..+++.|||.+.++..
T Consensus 308 ~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 308 KNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp TTTSCCEEEEEECTTSCEEEEEC
T ss_pred cCCCCCeeEEEECCCCcEEEEEe
Confidence 1245789999999998766664
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.24 Score=49.31 Aligned_cols=181 Identities=13% Similarity=0.023 Sum_probs=95.6
Q ss_pred eEEEEECC-----CcEEEEECCCCe---eeee--ecCCCCeEEEEEeeCCCCEEEEEEcC-----CcEEEEeCCCCcEEE
Q 005352 367 YLLSASID-----KTVRLWRVGNDH---CLRV--FPHSNYVTCVHFNPVDDNYFISGSID-----GKVRIWAVLSCHVVD 431 (701)
Q Consensus 367 ~l~s~s~d-----g~I~iWd~~~~~---~~~~--~~h~~~V~~l~f~p~~~~~l~sgs~d-----g~v~iwd~~~~~~~~ 431 (701)
.++.|+.+ ..+.+||+.+.+ .... +.....-.+++.. ++.+++.|+.+ ..+.+||+.+.+-..
T Consensus 65 l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~ 142 (301)
T 2vpj_A 65 IYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSM 142 (301)
T ss_dssp EEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEE
T ss_pred EEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEE
Confidence 55556544 468899988766 3322 2222111222222 66777777654 358899998876443
Q ss_pred EecCCC---cEEEEEEeeCCCeEEEEecC-----CcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEE
Q 005352 432 WVDIRQ---IVTAVCYRPDGQGGIVGSMM-----GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVM 503 (701)
Q Consensus 432 ~~~~~~---~i~~i~~sp~g~~l~~gs~d-----g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~ 503 (701)
...... ...++. .+++.++.|+.+ ..+.+||+.++....... ..........+.+ ++.+++
T Consensus 143 ~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~------~p~~r~~~~~~~~---~~~i~v 211 (301)
T 2vpj_A 143 LGDMQTAREGAGLVV--ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTP------MATKRSGAGVALL---NDHIYV 211 (301)
T ss_dssp EEECSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECC------CSSCCBSCEEEEE---TTEEEE
T ss_pred CCCCCCCcccceEEE--ECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCC------CCcccccceEEEE---CCEEEE
Confidence 332221 122222 267777777654 458999998887643211 1111111222222 467777
Q ss_pred EEECC-----CcEEEEeCCccceeee--cccCCCCeEEEEEecCCCEEEEEeCC-----CcEEEEeCCCCC
Q 005352 504 VSCAD-----SQVRILQGPNVIGKYK--GLRRSGNQLSACFTSDGKHIVSAGED-----SNVYMWNCIGHE 562 (701)
Q Consensus 504 ~~s~d-----g~I~iwd~~~~~~~~~--~~~~~~~v~~l~~s~dg~~l~sgs~D-----g~I~iWd~~~~~ 562 (701)
.|+.+ ..+.+||..+..-... ..........+ .-++++++.|+.+ ..|.+||+.+.+
T Consensus 212 ~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~--~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 212 VGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGAT--VLRGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp ECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE--EETTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred EeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEE--EECCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 77764 4688999874322111 11111111222 2366777777655 357788876643
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=96.13 E-value=0.011 Score=67.12 Aligned_cols=179 Identities=7% Similarity=-0.081 Sum_probs=106.7
Q ss_pred CCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEE-EEEcCCcEEEEeCCC----CcEEEEec-CCCcEEEEEEeeC
Q 005352 374 DKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFI-SGSIDGKVRIWAVLS----CHVVDWVD-IRQIVTAVCYRPD 447 (701)
Q Consensus 374 dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~-sgs~dg~v~iwd~~~----~~~~~~~~-~~~~i~~i~~sp~ 447 (701)
.+.|+..++...+....+.....+..|+|.+ ....|+ +-...+.|+.+++.. ........ ....+..|++.+.
T Consensus 385 ~~~I~~id~~~~~~~~~~~~~~~p~gla~d~-~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~ 463 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEV-ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 463 (699)
T ss_dssp TTC-CEECTTSCCEECCSCCCTTCCCCEEET-TTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS
T ss_pred ccceEEEeCCCCcceeeeccCcceEEEcccc-ccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee
Confidence 4578888888777666555555677899998 554444 444567899999875 22222221 1223566888865
Q ss_pred CCeEEE-EecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECC-CcEEEEeCCccceeeec
Q 005352 448 GQGGIV-GSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD-SQVRILQGPNVIGKYKG 525 (701)
Q Consensus 448 g~~l~~-gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~d-g~I~iwd~~~~~~~~~~ 525 (701)
+..|++ -...+.|.++++........ . .........+++.|..+.++++-... +.|.++++.........
T Consensus 464 ~g~LY~tD~~~~~I~v~d~dg~~~~~l----~----~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~ 535 (699)
T 1n7d_A 464 HSNIYWTDSVLGTVSVADTKGVKRKTL----F----REQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV 535 (699)
T ss_dssp SSBCEECCTTTSCEEEEBSSSCCEEEE----C----CCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEES
T ss_pred CCcEEEEeccCCeEEEEecCCCceEEE----E----eCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEE
Confidence 544444 45578899999876543211 0 11123456788888555555544333 78888776532222211
Q ss_pred ccCCCCeEEEEEecCCCEEE-EEeCCCcEEEEeCCCC
Q 005352 526 LRRSGNQLSACFTSDGKHIV-SAGEDSNVYMWNCIGH 561 (701)
Q Consensus 526 ~~~~~~v~~l~~s~dg~~l~-sgs~Dg~I~iWd~~~~ 561 (701)
.........|+|+|++..|+ +-+..+.|..++++..
T Consensus 536 ~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~ 572 (699)
T 1n7d_A 536 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG 572 (699)
T ss_dssp CSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSS
T ss_pred eCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCC
Confidence 11234567899998765554 4456678999998753
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.55 Score=46.79 Aligned_cols=183 Identities=12% Similarity=0.072 Sum_probs=96.8
Q ss_pred CC-eEEEEECC----CcEEEEECCCCeeeeeec--CCCCeEEEEEeeCCCCEEEEEEcC------CcEEEEeCCCCcEEE
Q 005352 365 NN-YLLSASID----KTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSID------GKVRIWAVLSCHVVD 431 (701)
Q Consensus 365 ~~-~l~s~s~d----g~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~~~~~l~sgs~d------g~v~iwd~~~~~~~~ 431 (701)
++ .++.|+.+ ..+.+||+.+.+....-. ....-.+++. - ++.+++.|+.+ ..+.+||+.+.+-..
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~ 132 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACA-A-EGKIYTSGGSEVGNSALYLFECYDTRTESWHT 132 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEE-E-TTEEEEECCBBTTBSCCCCEEEEETTTTEEEE
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEE-E-CCEEEEECCCCCCCcEeeeEEEEeCCCCceEe
Confidence 44 55566544 568889988876544322 1111112222 2 66777777765 458999998876544
Q ss_pred EecCCC---cEEEEEEeeCCCeEEEEec---------CCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCC
Q 005352 432 WVDIRQ---IVTAVCYRPDGQGGIVGSM---------MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDS 499 (701)
Q Consensus 432 ~~~~~~---~i~~i~~sp~g~~l~~gs~---------dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~ 499 (701)
...... ....+. .+++.++.|+. -..+.+||+.+........ ........ ++... ++
T Consensus 133 ~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~------~p~~r~~~-~~~~~--~~ 201 (306)
T 3ii7_A 133 KPSMLTQRCSHGMVE--ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCP------MIEARKNH-GLVFV--KD 201 (306)
T ss_dssp ECCCSSCCBSCEEEE--ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECC------CSSCCBSC-EEEEE--TT
T ss_pred CCCCcCCcceeEEEE--ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCC------ccchhhcc-eEEEE--CC
Confidence 322211 122222 36666677654 3458899999886543221 11111111 22222 45
Q ss_pred CEEEEEECC-----CcEEEEeCCccceee--ecccCCCCeEEEEEecCCCEEEEEeCC-----CcEEEEeCCCCC
Q 005352 500 SKVMVSCAD-----SQVRILQGPNVIGKY--KGLRRSGNQLSACFTSDGKHIVSAGED-----SNVYMWNCIGHE 562 (701)
Q Consensus 500 ~~l~~~s~d-----g~I~iwd~~~~~~~~--~~~~~~~~v~~l~~s~dg~~l~sgs~D-----g~I~iWd~~~~~ 562 (701)
.+++.|+.+ ..+.+||..+..-.. ...........+.+ ++++++.|+.+ ..+.+||+.+.+
T Consensus 202 ~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 202 KIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp EEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred EEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 677777653 468888876432111 11111112222222 67777888754 457888876653
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=95.98 E-value=3.1 Score=47.45 Aligned_cols=193 Identities=10% Similarity=0.072 Sum_probs=113.8
Q ss_pred cCeEEEEEecCCeEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEe
Q 005352 355 GEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV 433 (701)
Q Consensus 355 ~~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~ 433 (701)
..|.++....++.|..++.+| +..||..+.+...... ....|.++.. . ++ .|..++.+ .|..||..+++.....
T Consensus 63 ~~i~~i~~d~~g~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~-~-~g-~lWigt~~-Gl~~~~~~~~~~~~~~ 137 (758)
T 3ott_A 63 TRIYCGVIIDNTYLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMAL-Q-GD-TLWLGALN-GLYTYQLQSRKLTSFD 137 (758)
T ss_dssp SCEEEEEEETTTEEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEE-E-TT-EEEEEETT-EEEEEETTTCCEEEEC
T ss_pred ceEEEEEEcCCCcEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEe-c-CC-cEEEEcCC-cceeEeCCCCeEEEec
Confidence 468888777778777777665 7889988765433111 2335777654 3 44 56666655 6888998877655441
Q ss_pred c-----CCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECC
Q 005352 434 D-----IRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD 508 (701)
Q Consensus 434 ~-----~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~d 508 (701)
. ....|.++....+|... +|+.. -+..|+..+...... ............|.++...+ ++..|.+|+.
T Consensus 138 ~~~~~l~~~~i~~i~~d~~g~lW-igt~~-Gl~~~~~~~~~~~~~---~~~~~~~~~~~~i~~i~~d~-~~~~lWigt~- 210 (758)
T 3ott_A 138 TRRNGLPNNTIYSIIRTKDNQIY-VGTYN-GLCRYIPSNGKFEGI---PLPVHSSQSNLFVNSLLEDT-TRQCVWIGTE- 210 (758)
T ss_dssp HHHHCCSCSCEEEEEECTTCCEE-EEETT-EEEEEETTTTEEEEE---CCCCCTTCSSCCEEEEEEET-TTTEEEEEEE-
T ss_pred cCCCCcCCCeEEEEEEcCCCCEE-EEeCC-CHhhCccCCCceEEe---cCCCccccccceeEEEEEEC-CCCEEEEEEC-
Confidence 1 23458888877777644 45554 477888877654311 11110111223477777665 4455555654
Q ss_pred CcEEEEeCCccce-eeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 509 SQVRILQGPNVIG-KYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 509 g~I~iwd~~~~~~-~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
+-+..+|..+... .+... ....|.++....+|.+.+. +.+ -+.+++..+..
T Consensus 211 ~Gl~~~~~~~~~~~~~~~l-~~~~i~~i~~d~~g~lWig-T~~-Gl~~~~~~~~~ 262 (758)
T 3ott_A 211 GYLFQYFPSTGQIKQTEAF-HNNSIKSLALDGNGDLLAG-TDN-GLYVYHNDTTP 262 (758)
T ss_dssp EEEEEEETTTTEEEEEEEE-EEEEEEEEEECTTCCEEEE-ETT-EEEEECCTTSC
T ss_pred CCCeEEcCCCCeEEeccCC-CCCeEEEEEEcCCCCEEEE-eCC-ceeEEecCCCc
Confidence 4678888754321 12111 2345788888888876654 444 57888876543
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.89 E-value=0.8 Score=45.85 Aligned_cols=172 Identities=9% Similarity=0.033 Sum_probs=87.2
Q ss_pred EEEEECCCCeeeeeecCCCCe--EEEEEeeCCCCEEEEEEcC--------CcEEEEeCCCCcEEEEecCCCc--EEEEEE
Q 005352 377 VRLWRVGNDHCLRVFPHSNYV--TCVHFNPVDDNYFISGSID--------GKVRIWAVLSCHVVDWVDIRQI--VTAVCY 444 (701)
Q Consensus 377 I~iWd~~~~~~~~~~~h~~~V--~~l~f~p~~~~~l~sgs~d--------g~v~iwd~~~~~~~~~~~~~~~--i~~i~~ 444 (701)
+.+||..+.+-...-....+- .+++.. ++.+++.|+.+ ..+.+||+.+.+-........+ -.+++
T Consensus 69 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~- 145 (315)
T 4asc_A 69 FLQFDHLDSEWLGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVL- 145 (315)
T ss_dssp EEEEETTTTEEEECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEE-
T ss_pred eEEecCCCCeEEECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEE-
Confidence 778888887653322211111 122222 56677777642 4589999988754433222111 11122
Q ss_pred eeCCCeEEEEec------CCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCC-----cEEE
Q 005352 445 RPDGQGGIVGSM------MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADS-----QVRI 513 (701)
Q Consensus 445 sp~g~~l~~gs~------dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg-----~I~i 513 (701)
..+++.++.|+. -..+.+||+.+........+ .........+.+ ++.+++.|+.++ .+.+
T Consensus 146 ~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~------p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~ 216 (315)
T 4asc_A 146 SHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPM------QTARSLFGATVH---DGRIIVAAGVTDTGLTSSAEV 216 (315)
T ss_dssp EETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCC------SSCCBSCEEEEE---TTEEEEEEEECSSSEEEEEEE
T ss_pred EECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCC------CCchhceEEEEE---CCEEEEEeccCCCCccceEEE
Confidence 246667777766 24689999998865432211 111111122222 567888887654 4788
Q ss_pred EeCCccceeeec-ccCCCCeEEEEEecCCCEEEEEeCCC--------------cEEEEeCCCC
Q 005352 514 LQGPNVIGKYKG-LRRSGNQLSACFTSDGKHIVSAGEDS--------------NVYMWNCIGH 561 (701)
Q Consensus 514 wd~~~~~~~~~~-~~~~~~v~~l~~s~dg~~l~sgs~Dg--------------~I~iWd~~~~ 561 (701)
||..+..-.... ......-.+++ .-++++++.|+.++ .|.+||+.+.
T Consensus 217 yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 278 (315)
T 4asc_A 217 YSITDNKWAPFEAFPQERSSLSLV-SLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEK 278 (315)
T ss_dssp EETTTTEEEEECCCSSCCBSCEEE-EETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTT
T ss_pred EECCCCeEEECCCCCCcccceeEE-EECCEEEEECCccccCcCCccccccccCcEEEecCCCC
Confidence 887643211111 11111111222 23667777776532 3667776654
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=95.80 E-value=1.5 Score=44.69 Aligned_cols=140 Identities=14% Similarity=0.129 Sum_probs=80.9
Q ss_pred eEEEEEec--CC--eEEEEEC---CCcEEEEECCCC--e--eeeeecC--CCCeEEEEEeeCCCCEEEEEEc--------
Q 005352 357 ILDLSWSK--NN--YLLSASI---DKTVRLWRVGND--H--CLRVFPH--SNYVTCVHFNPVDDNYFISGSI-------- 415 (701)
Q Consensus 357 I~~l~~s~--~~--~l~s~s~---dg~I~iWd~~~~--~--~~~~~~h--~~~V~~l~f~p~~~~~l~sgs~-------- 415 (701)
...|.+.+ ++ +|+.+.. +.+|.+|++... . .+..+.+ -...+.+.+.+ ++.++++...
T Consensus 114 PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~-~G~fyvt~~~~ftd~~~~ 192 (355)
T 3sre_A 114 PHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLK 192 (355)
T ss_dssp EEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE-TTEEEEEESCSCSSHHHH
T ss_pred eeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeC-CCCEEecCCcEeCCcccc
Confidence 44555544 33 4555533 456778776543 2 2223332 34688999999 8877776531
Q ss_pred ---------CCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEe-cCCcEEEEECCCC-eeeeeeeEEeecccCC
Q 005352 416 ---------DGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGS-MMGDCRFYNVSDN-HLELDAEICVHSKKKA 484 (701)
Q Consensus 416 ---------dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs-~dg~v~i~d~~~~-~~~~~~~~~~~~~~~~ 484 (701)
.|.|..+|. +++......-...+.++|+||++.|+++. ..+.|..|++... .+.....+ .
T Consensus 193 ~~e~~~~~~~g~vyr~d~--~~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~---~---- 263 (355)
T 3sre_A 193 SWEMHLGLAWSFVTYYSP--NDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL---S---- 263 (355)
T ss_dssp HHHHHTTCCCEEEEEECT--TCCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE---E----
T ss_pred cchhhccCCccEEEEEEC--CeEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE---e----
Confidence 244555554 33333333345688999999998887765 5788999998743 32221111 1
Q ss_pred CCCCeeEEEEecCCCCEEEEEE
Q 005352 485 PCKRITGFQFLPQDSSKVMVSC 506 (701)
Q Consensus 485 ~~~~i~~l~~~p~~~~~l~~~s 506 (701)
.......+++.+.++.+.+++.
T Consensus 264 ~~g~PDGi~vD~e~G~lwva~~ 285 (355)
T 3sre_A 264 FDTLVDNISVDPVTGDLWVGCH 285 (355)
T ss_dssp CSSEEEEEEECTTTCCEEEEEE
T ss_pred CCCCCceEEEeCCCCcEEEEec
Confidence 1245677777762255555454
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=95.67 E-value=2.7 Score=44.54 Aligned_cols=56 Identities=11% Similarity=0.053 Sum_probs=32.5
Q ss_pred CCEEEEEECCCcEEEEeCCcc-c---ee-eecccCCCCeEEEEEecCCC-EEEEEeCCCcEE
Q 005352 499 SSKVMVSCADSQVRILQGPNV-I---GK-YKGLRRSGNQLSACFTSDGK-HIVSAGEDSNVY 554 (701)
Q Consensus 499 ~~~l~~~s~dg~I~iwd~~~~-~---~~-~~~~~~~~~v~~l~~s~dg~-~l~sgs~Dg~I~ 554 (701)
+.+++..-..+.|....+... . .. .........+..+++.|||. ++++.+..|.|+
T Consensus 369 g~lfv~~~~~~~i~~v~l~~~g~~~~~~~~~~~~~~~R~~dv~~gpDG~~Lyv~~d~~G~i~ 430 (454)
T 1cru_A 369 NTLLVPSLKRGVIFRIKLDPTYSTTYDDAVPMFKSNNRYRDVIASPDGNVLYVLTDTAGNVQ 430 (454)
T ss_dssp TEEEEEBSSSCCEEEEEECTTSSSEEEEEEEESCCSSCEEEEEECTTSSCEEEEECSSCCEE
T ss_pred CcEEEeecCCCEEEEEEECCCCCeeeeeeeeecccCCCceeEEECCCCCEEEEEECCCCCCc
Confidence 334444444667776665531 1 11 12222346899999999997 666655566654
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=95.64 E-value=0.99 Score=45.22 Aligned_cols=131 Identities=12% Similarity=0.089 Sum_probs=69.5
Q ss_pred EEEEECCCCeeeeeec--CCCCeEEEEEeeCCCCEEEEEEcC-------CcEEEEeCCCCcEEEEecCCCcEE-EEEEee
Q 005352 377 VRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSID-------GKVRIWAVLSCHVVDWVDIRQIVT-AVCYRP 446 (701)
Q Consensus 377 I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~~~~~l~sgs~d-------g~v~iwd~~~~~~~~~~~~~~~i~-~i~~sp 446 (701)
+.+||..+.+-...-. ....-.+++.. ++.+++.|+.+ ..+.+||+.+.+-........+.. ..+...
T Consensus 80 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~ 157 (318)
T 2woz_A 80 FFQLDNVSSEWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISH 157 (318)
T ss_dssp EEEEETTTTEEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEE
T ss_pred EEEEeCCCCcEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEE
Confidence 7778887776543322 11111222222 66777777764 248889998876544332222211 111224
Q ss_pred CCCeEEEEec------CCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECC-----CcEEEEe
Q 005352 447 DGQGGIVGSM------MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD-----SQVRILQ 515 (701)
Q Consensus 447 ~g~~l~~gs~------dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~d-----g~I~iwd 515 (701)
+++.++.|+. -..+.+||+.++....... ........ +++.. ++.+++.|+.+ ..+.+||
T Consensus 158 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~------~p~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~yd 228 (318)
T 2woz_A 158 NGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAP------MKTPRSMF-GVAIH--KGKIVIAGGVTEDGLSASVEAFD 228 (318)
T ss_dssp TTEEEEECCEESSSCBCCCEEEEETTTTEEEEECC------CSSCCBSC-EEEEE--TTEEEEEEEEETTEEEEEEEEEE
T ss_pred CCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCC------CCCCcccc-eEEEE--CCEEEEEcCcCCCCccceEEEEE
Confidence 6777777764 2458999999887543221 11111111 22222 46777777753 3467788
Q ss_pred CCc
Q 005352 516 GPN 518 (701)
Q Consensus 516 ~~~ 518 (701)
..+
T Consensus 229 ~~~ 231 (318)
T 2woz_A 229 LKT 231 (318)
T ss_dssp TTT
T ss_pred CCC
Confidence 764
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=95.47 E-value=0.55 Score=46.92 Aligned_cols=173 Identities=10% Similarity=0.025 Sum_probs=89.5
Q ss_pred CcEEEEECCCCeeeeeec--CCCCeEEEEEeeCCCCEEEEEEcC-----CcEEEEeCCCCcEEEEecCC---CcEEEEEE
Q 005352 375 KTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSID-----GKVRIWAVLSCHVVDWVDIR---QIVTAVCY 444 (701)
Q Consensus 375 g~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~~~~~l~sgs~d-----g~v~iwd~~~~~~~~~~~~~---~~i~~i~~ 444 (701)
..+.+||+.+.+....-. ....-.+++.. ++.+++.|+.+ ..+.+||+.+.+-....... .....+.+
T Consensus 90 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~ 167 (308)
T 1zgk_A 90 SALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL 167 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE
T ss_pred ceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE
Confidence 468889988876443322 11111122222 56777776643 35889999887644332221 11222222
Q ss_pred eeCCCeEEEEecC-----CcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECC-----CcEEEE
Q 005352 445 RPDGQGGIVGSMM-----GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD-----SQVRIL 514 (701)
Q Consensus 445 sp~g~~l~~gs~d-----g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~d-----g~I~iw 514 (701)
+++.++.|+.+ ..+.+||+.+........ ..........+.+ ++.+++.|+.+ ..+.+|
T Consensus 168 --~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~------~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~y 236 (308)
T 1zgk_A 168 --NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITA------MNTIRSGAGVCVL---HNCIYAAGGYDGQDQLNSVERY 236 (308)
T ss_dssp --TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCC------CSSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEE
T ss_pred --CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCC------CCCccccceEEEE---CCEEEEEeCCCCCCccceEEEE
Confidence 66777777654 458999998877543221 1111111222222 46777777764 568899
Q ss_pred eCCccceeee-cccCCCCeEEEEEecCCCEEEEEeCC-----CcEEEEeCCCC
Q 005352 515 QGPNVIGKYK-GLRRSGNQLSACFTSDGKHIVSAGED-----SNVYMWNCIGH 561 (701)
Q Consensus 515 d~~~~~~~~~-~~~~~~~v~~l~~s~dg~~l~sgs~D-----g~I~iWd~~~~ 561 (701)
|..+..-... .......-.+++. -++++++.|+.+ ..+.+||+.+.
T Consensus 237 d~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 237 DVETETWTFVAPMKHRRSALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp ETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred eCCCCcEEECCCCCCCccceEEEE-ECCEEEEEcCcCCCcccceEEEEcCCCC
Confidence 9864321111 1111111112222 266777777644 34677776654
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=95.44 E-value=0.22 Score=46.70 Aligned_cols=180 Identities=10% Similarity=0.029 Sum_probs=99.6
Q ss_pred eEEEEECCCcEEEEECCCCe------eeeeecC--CCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCc
Q 005352 367 YLLSASIDKTVRLWRVGNDH------CLRVFPH--SNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQI 438 (701)
Q Consensus 367 ~l~s~s~dg~I~iWd~~~~~------~~~~~~h--~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~ 438 (701)
+|+....| +|+.=...++. ....+.. =..+..++|+| ++.+.++ .+|.+.-.+..+.....+......
T Consensus 6 ~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~ 81 (236)
T 1tl2_A 6 MLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDNWMGRAKK 81 (236)
T ss_dssp CEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHHHCEE
T ss_pred EEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECC-CccEEEE--eCCeEEEECCCCCCcccccccccE
Confidence 56666666 55544443333 1222333 24678999999 8887776 678877777666443333333233
Q ss_pred E--------EEEEEeeCCCeEEEEecCCcEEEEECCCCeee-e-eeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECC
Q 005352 439 V--------TAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLE-L-DAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD 508 (701)
Q Consensus 439 i--------~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~-~-~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~d 508 (701)
| .++.|.|+|.+.++ .||.|.-++-.+.... . .....+ ....-..+..|.+.| ++.+.++. |
T Consensus 82 IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~v---g~~gw~~~~~lff~p-~G~Lyav~--d 153 (236)
T 1tl2_A 82 IGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEV---GSGGWSGFKFLFFHP-NGYLYAVH--G 153 (236)
T ss_dssp EECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEE---ECSSGGGEEEEEECT-TSCEEEEE--T
T ss_pred ecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEe---ccCCCCceEEEEECC-CceEEEEe--C
Confidence 3 78999999988777 5698877765331110 0 000000 011124578899999 66666666 7
Q ss_pred CcEEEEeCCcc-------ceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 509 SQVRILQGPNV-------IGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 509 g~I~iwd~~~~-------~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
+.++-...... .....+...-.....+.|+++|.+.+.. +| ++|....+.
T Consensus 154 g~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g--~~Y~~~~p~ 210 (236)
T 1tl2_A 154 QQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GG--KFYEDYPPS 210 (236)
T ss_dssp TEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TT--EEEEESCCC
T ss_pred CcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CC--eEEecCCcc
Confidence 77544332210 0111111122234457799999877666 66 555554443
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.43 E-value=1 Score=45.63 Aligned_cols=92 Identities=9% Similarity=-0.002 Sum_probs=56.0
Q ss_pred ECCCcEEEEECCCCeeeeeec-----CCCCeEEEEEee-C-------CCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCc
Q 005352 372 SIDKTVRLWRVGNDHCLRVFP-----HSNYVTCVHFNP-V-------DDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQI 438 (701)
Q Consensus 372 s~dg~I~iWd~~~~~~~~~~~-----h~~~V~~l~f~p-~-------~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~ 438 (701)
+.||.|..++..++.....+. ...++.. .-.| . .+..+++|+.+|.+...|+.+|+.+.......+
T Consensus 64 ~~dG~l~a~~~~~G~~~~~~~~~~lv~~SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~ 142 (339)
T 2be1_A 64 FGDGNIYYFNAHQGLQKLPLSIRQLVSTSPLHL-KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSK 142 (339)
T ss_dssp STTTEEEEEETTTEEEEEEEEHHHHHTTCSEEE-ECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCB
T ss_pred CCCCEEEEEECCCCcEEeeeccccceecccccc-CCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCC
Confidence 578999999988876554443 2333332 1001 0 356788999999999999999999866654432
Q ss_pred EE--------EEEEe-----eCCCeEEEEecCCcEEEEE
Q 005352 439 VT--------AVCYR-----PDGQGGIVGSMMGDCRFYN 464 (701)
Q Consensus 439 i~--------~i~~s-----p~g~~l~~gs~dg~v~i~d 464 (701)
.. |.... ..+..++.+..+..+.+.+
T Consensus 143 ~~~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~ 181 (339)
T 2be1_A 143 NGYFGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHS 181 (339)
T ss_dssp CC--------------------CCEEEEEEEEEECEECC
T ss_pred cccccccccccccccccccccCCCeEEEecceEEEEEEC
Confidence 11 11110 1235677777777777666
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=95.38 E-value=2.8 Score=42.74 Aligned_cols=189 Identities=8% Similarity=0.067 Sum_probs=106.2
Q ss_pred CeEEEEEecCCeEEEEE-------------CCCcEEEEECCCC--eeeeeec--------CCCCeEEEEEeeC-CCC--E
Q 005352 356 EILDLSWSKNNYLLSAS-------------IDKTVRLWRVGND--HCLRVFP--------HSNYVTCVHFNPV-DDN--Y 409 (701)
Q Consensus 356 ~I~~l~~s~~~~l~s~s-------------~dg~I~iWd~~~~--~~~~~~~--------h~~~V~~l~f~p~-~~~--~ 409 (701)
..-++...++|.+++++ .+|.|.++|..+. +. ..+. .......|.+.+. ++. +
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~-~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L 129 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAV-SELEIIGNTLDISSFNPHGISTFIDDDNTVYL 129 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCE-EECEEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCce-EEEEccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence 45577778888555555 6899999998742 22 2222 1236778887662 232 3
Q ss_pred EEEEEc--CCcEEEEeCCCC--cEE--EEecC--CCcEEEEEEeeCCCeEEEEec-----------------CCcEEEEE
Q 005352 410 FISGSI--DGKVRIWAVLSC--HVV--DWVDI--RQIVTAVCYRPDGQGGIVGSM-----------------MGDCRFYN 464 (701)
Q Consensus 410 l~sgs~--dg~v~iwd~~~~--~~~--~~~~~--~~~i~~i~~sp~g~~l~~gs~-----------------dg~v~i~d 464 (701)
+++-.. +..|.+|++... ... ....+ -...+.+.+.++|.+.++... .|.|..|+
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d 209 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS 209 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC
T ss_pred EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEE
Confidence 444333 456778776543 222 22222 245889999999987776541 24455554
Q ss_pred CCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCcc--ceeeecccCCCCeEEEEEec-CC
Q 005352 465 VSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV--IGKYKGLRRSGNQLSACFTS-DG 541 (701)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~--~~~~~~~~~~~~v~~l~~s~-dg 541 (701)
. ++... ... .....++++|+|+...++++-+..+.|+.|++... .............-.+++.+ +|
T Consensus 210 ~--~~~~~----~~~-----~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G 278 (355)
T 3sre_A 210 P--NDVRV----VAE-----GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTG 278 (355)
T ss_dssp T--TCCEE----EEE-----EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTC
T ss_pred C--CeEEE----eec-----CCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCC
Confidence 4 22111 011 11346899999943344455556889999997521 11111112235567788888 58
Q ss_pred CEEEEEeCC-CcEEEE
Q 005352 542 KHIVSAGED-SNVYMW 556 (701)
Q Consensus 542 ~~l~sgs~D-g~I~iW 556 (701)
++.+++..+ +.|..|
T Consensus 279 ~lwva~~~~g~~v~~~ 294 (355)
T 3sre_A 279 DLWVGCHPNGMRIFFY 294 (355)
T ss_dssp CEEEEEESCHHHHHSC
T ss_pred cEEEEecCCceEEEEE
Confidence 877766544 334434
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=95.24 E-value=0.45 Score=49.36 Aligned_cols=147 Identities=12% Similarity=0.098 Sum_probs=94.9
Q ss_pred ecCC-eEEEEECCCcEEEEECCCCeeeeeecCC-----CCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCc--------
Q 005352 363 SKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHS-----NYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH-------- 428 (701)
Q Consensus 363 s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~h~-----~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~-------- 428 (701)
+.++ .++.+- ++.||.-++......+.+... ..|..+..+| ++++|+..+ +..|.|-.+..+.
T Consensus 29 ~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~ 105 (452)
T 3pbp_A 29 SQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST-SGDLLCLFN-DNEIFVMEVPWGYSNVEDVSI 105 (452)
T ss_dssp ETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT-TSSEEEEEC-SSEEEEEECCTTCSCCCCHHH
T ss_pred EcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECC-CCCEEEEec-CCeEEEEEecCccccCccccc
Confidence 3445 444433 478888888755444444432 2588899999 999999886 6689999887321
Q ss_pred ----EEEEec-------CCCcEEEEEEee---CCCeEEEEecCCcEEEEECCCCeeeeeeeEEee---cccCCCCCCeeE
Q 005352 429 ----VVDWVD-------IRQIVTAVCYRP---DGQGGIVGSMMGDCRFYNVSDNHLELDAEICVH---SKKKAPCKRITG 491 (701)
Q Consensus 429 ----~~~~~~-------~~~~i~~i~~sp---~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~---~~~~~~~~~i~~ 491 (701)
....+. ...+|..+.|+| .+..|++-..|+.|++||+........ .+... -........|.+
T Consensus 106 ~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S 184 (452)
T 3pbp_A 106 QDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITD 184 (452)
T ss_dssp HHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEE
T ss_pred ccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEE
Confidence 011111 246799999999 456899999999999999986221111 01000 011223367899
Q ss_pred EEEecCCCCEEEEEE--CCCcEEEE
Q 005352 492 FQFLPQDSSKVMVSC--ADSQVRIL 514 (701)
Q Consensus 492 l~~~p~~~~~l~~~s--~dg~I~iw 514 (701)
++|.+ ++-.|.+.+ ..|.|+-.
T Consensus 185 ~~Fg~-~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 185 LEFSK-DGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EEECT-TSSCEEEEECTTSCEEEEE
T ss_pred EEEcC-CCcEEEEEecCCCCCEEEE
Confidence 99999 677677755 67888664
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=95.19 E-value=7.4 Score=46.50 Aligned_cols=110 Identities=12% Similarity=0.123 Sum_probs=74.4
Q ss_pred cCeEEEEEecCCeEEEEECCCcEEEEECCCCeeee--eecCCCCeEEEEEeeCC-----CCEEEEEEc-CCcEEEEeCCC
Q 005352 355 GEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLR--VFPHSNYVTCVHFNPVD-----DNYFISGSI-DGKVRIWAVLS 426 (701)
Q Consensus 355 ~~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~--~~~h~~~V~~l~f~p~~-----~~~l~sgs~-dg~v~iwd~~~ 426 (701)
..|...+.+. .+++.++ ++.+.++.+..++... .......|.|+++.|.. ..+++.|.. |++|+|+++.+
T Consensus 514 ~~I~~As~n~-~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~ 591 (1158)
T 3ei3_A 514 KNISVASCNS-SQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPS 591 (1158)
T ss_dssp CCCCEEEECS-SEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTT
T ss_pred CEEEEEEeCC-CEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCC
Confidence 3566666543 3555554 6788888877654322 23356789999998632 478999996 99999999998
Q ss_pred CcEEEEecCC--CcEEEEEEee--CCCeEEEEecCCcEEEEECC
Q 005352 427 CHVVDWVDIR--QIVTAVCYRP--DGQGGIVGSMMGDCRFYNVS 466 (701)
Q Consensus 427 ~~~~~~~~~~--~~i~~i~~sp--~g~~l~~gs~dg~v~i~d~~ 466 (701)
.+.+...... ..+.++++.. ...+|.+|-.||.+.-+.+.
T Consensus 592 l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d 635 (1158)
T 3ei3_A 592 FELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLN 635 (1158)
T ss_dssp CCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEEC
T ss_pred CCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEc
Confidence 7766544432 3555665543 33578899999998766654
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=95.01 E-value=0.35 Score=51.77 Aligned_cols=130 Identities=15% Similarity=0.102 Sum_probs=76.0
Q ss_pred EEecCCCcEEEEEEeeCCCeEEEEec-CCcEEEEECCCCeeeee-----eeEEeecccCCCCCCeeEEEEecCCCCEEEE
Q 005352 431 DWVDIRQIVTAVCYRPDGQGGIVGSM-MGDCRFYNVSDNHLELD-----AEICVHSKKKAPCKRITGFQFLPQDSSKVMV 504 (701)
Q Consensus 431 ~~~~~~~~i~~i~~sp~g~~l~~gs~-dg~v~i~d~~~~~~~~~-----~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~ 504 (701)
..+........+..+|||+++++++. +.++.++|++....... ..-.+.. ...........+|.+ ++....+
T Consensus 317 ~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~a-e~e~GlGPlHt~Fd~-~G~aYTt 394 (638)
T 3sbq_A 317 RYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVG-EPELGLGPLHTTFDG-RGNAYTT 394 (638)
T ss_dssp EEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEE-CCBCCSCEEEEEECS-SSEEEEE
T ss_pred EEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEe-eccCCCcccEEEECC-CCceEee
Confidence 44444556677899999999988765 78899999974211000 0000011 111334567788988 5655555
Q ss_pred EECCCcEEEEeCCccceeeeccc---------CCCCeEEEEE------ecCCCEEEEEe---CCCcE----------EEE
Q 005352 505 SCADSQVRILQGPNVIGKYKGLR---------RSGNQLSACF------TSDGKHIVSAG---EDSNV----------YMW 556 (701)
Q Consensus 505 ~s~dg~I~iwd~~~~~~~~~~~~---------~~~~v~~l~~------s~dg~~l~sgs---~Dg~I----------~iW 556 (701)
-.-|.+|.-|++......+.+.. -.-.+-.+.- .++|++|++.. .|..+ .+.
T Consensus 395 lfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK~skdrfl~vGpl~pen~Qli 474 (638)
T 3sbq_A 395 LFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSKFSKDRFLPVGPLHPENDQLI 474 (638)
T ss_dssp ETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEESCCTTSSCCCSSSCCEEEEEE
T ss_pred eeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEecccccccCcCCCCCCCCcceeE
Confidence 55799999999865433332211 1112222222 47889999884 45433 666
Q ss_pred eCCCCC
Q 005352 557 NCIGHE 562 (701)
Q Consensus 557 d~~~~~ 562 (701)
|+...+
T Consensus 475 dIsGdk 480 (638)
T 3sbq_A 475 DISGDE 480 (638)
T ss_dssp ECSSSS
T ss_pred ecCCCc
Confidence 765554
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=94.92 E-value=5.8 Score=43.90 Aligned_cols=187 Identities=8% Similarity=-0.024 Sum_probs=113.8
Q ss_pred eEEEEECCCcEEEEECCCCeeee-ee--cCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecC-CCcEEEE
Q 005352 367 YLLSASIDKTVRLWRVGNDHCLR-VF--PHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDI-RQIVTAV 442 (701)
Q Consensus 367 ~l~s~s~dg~I~iWd~~~~~~~~-~~--~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~i~~i 442 (701)
+|+.+. .+.|+..++....... .+ ..-..+..++|.+.++.++++-...+.|+.+++........... -..+..+
T Consensus 319 ~Ll~~~-~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~Gl 397 (619)
T 3s94_A 319 LLLLAR-RTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGI 397 (619)
T ss_dssp EEEEEE-SSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEE
T ss_pred EEEEEc-ccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCce
Confidence 444433 4567777876653211 12 23356789999984455555555578899999876543333322 2467789
Q ss_pred EEeeCCCeE-EEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEEC-CCcEEEEeCCccc
Q 005352 443 CYRPDGQGG-IVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCA-DSQVRILQGPNVI 520 (701)
Q Consensus 443 ~~sp~g~~l-~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~-dg~I~iwd~~~~~ 520 (701)
++.+.+..| ++-+..+.|.+.++....... +. ........+|++.|..+.++++-.. ...|...++....
T Consensus 398 AvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~-----l~---~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~ 469 (619)
T 3s94_A 398 AVDWVARNLYWTDTGTDRIEVTRLNGTMRKI-----LI---SEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSD 469 (619)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSCEE-----EE---CTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS
T ss_pred EEecccCcEEEEeCCCCcEEEEeCCCCeEEE-----EE---ECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCc
Confidence 998755544 444567889999987653211 11 1133567899999955555555433 3677776665322
Q ss_pred eeeecccCCCCeEEEEEecCCCEEEEEe-CCCcEEEEeCCCCC
Q 005352 521 GKYKGLRRSGNQLSACFTSDGKHIVSAG-EDSNVYMWNCIGHE 562 (701)
Q Consensus 521 ~~~~~~~~~~~v~~l~~s~dg~~l~sgs-~Dg~I~iWd~~~~~ 562 (701)
............+.+++++++..|+.+. ..+.|...+++...
T Consensus 470 ~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~ 512 (619)
T 3s94_A 470 RVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTG 512 (619)
T ss_dssp CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCC
T ss_pred cEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCc
Confidence 2221222346778999999777777664 45779889886544
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=94.91 E-value=1.6 Score=52.31 Aligned_cols=204 Identities=9% Similarity=0.086 Sum_probs=114.1
Q ss_pred CeEEEEEecCCeEEEEECCCcEEEEECCC-Ceeeeeec-C----CCCeEEEEEeeCCCCEEEEEE-------cCCcEEEE
Q 005352 356 EILDLSWSKNNYLLSASIDKTVRLWRVGN-DHCLRVFP-H----SNYVTCVHFNPVDDNYFISGS-------IDGKVRIW 422 (701)
Q Consensus 356 ~I~~l~~s~~~~l~s~s~dg~I~iWd~~~-~~~~~~~~-h----~~~V~~l~f~p~~~~~l~sgs-------~dg~v~iw 422 (701)
+|.-=.|-....|+-.+ +..|..|++.. ..+++.|. | ...|..-..++ +.++++..+ ..|.+.+|
T Consensus 107 ~VvfWkWis~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~-~~kW~~l~gi~~~~~~v~G~mQLy 184 (1630)
T 1xi4_A 107 DVTFWKWISLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLY 184 (1630)
T ss_pred CceEEEecCCCeeEEEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCC-CCCeEEEEeeccCCCcccceeeee
Confidence 34444565555333332 45799999964 35555554 2 34566666777 777766544 34789999
Q ss_pred eCCCCcEEEEecCCCcEEEEEEe--eCCCeEEE-Ee---cCCcEEEEECCCC---eeee-eeeEEeecccCCCCCCeeEE
Q 005352 423 AVLSCHVVDWVDIRQIVTAVCYR--PDGQGGIV-GS---MMGDCRFYNVSDN---HLEL-DAEICVHSKKKAPCKRITGF 492 (701)
Q Consensus 423 d~~~~~~~~~~~~~~~i~~i~~s--p~g~~l~~-gs---~dg~v~i~d~~~~---~~~~-~~~~~~~~~~~~~~~~i~~l 492 (701)
....+......+|......+... +....+++ +. ..+.++|.++... .... .....+.........-..++
T Consensus 185 S~er~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~ 264 (1630)
T 1xi4_A 185 SVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAM 264 (1630)
T ss_pred ecccccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEE
Confidence 88766443333333222222111 11111222 11 1268899888543 1111 11111111111223344567
Q ss_pred EEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 493 QFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 493 ~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
..++ ....+...+.-|.|++||+.+....|...-...+|...+-+....=++.....|.|.--.++...
T Consensus 265 ~vs~-k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~ 333 (1630)
T 1xi4_A 265 QISE-KHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN 333 (1630)
T ss_pred Eecc-ccCEEEEEecCceEEEEecccchhhhhccccCCceEEeccCCCCCceEEEcCCceEEEEEEccch
Confidence 7777 67788889999999999999988888765566666655555443345555577777777766554
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=94.85 E-value=4 Score=41.65 Aligned_cols=199 Identities=11% Similarity=0.014 Sum_probs=106.2
Q ss_pred ccCeEEEEEecCCeEEEEECCCcEEEEECCCCe-eeeeec----CCCCeEEEEEeeCC---CCEEEEEEc----C----C
Q 005352 354 SGEILDLSWSKNNYLLSASIDKTVRLWRVGNDH-CLRVFP----HSNYVTCVHFNPVD---DNYFISGSI----D----G 417 (701)
Q Consensus 354 ~~~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~-~~~~~~----h~~~V~~l~f~p~~---~~~l~sgs~----d----g 417 (701)
-.....|+|.|++.|+.+..++.|++++ ..++ .+..+. .......|+++| + +..|+.+.. + .
T Consensus 28 l~~P~~ia~~pdG~l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~p-df~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHP-EFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp CSCEEEEEEEETTEEEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECT-TTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCCeEEEEcCCCeEEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCC-CCCcCCEEEEEEeccCCCCCcce
Confidence 3456899999999777777889999997 3444 222221 235688999999 5 344444332 2 5
Q ss_pred cEEEEeCCCC-------cEE-EEec--CCCcEEEEEEeeCCCeEEEEec-------------CCcEEEEECCCCeeee--
Q 005352 418 KVRIWAVLSC-------HVV-DWVD--IRQIVTAVCYRPDGQGGIVGSM-------------MGDCRFYNVSDNHLEL-- 472 (701)
Q Consensus 418 ~v~iwd~~~~-------~~~-~~~~--~~~~i~~i~~sp~g~~l~~gs~-------------dg~v~i~d~~~~~~~~-- 472 (701)
.|..|+.... +.+ .... .......++|.|+|.++++.+. .|.|.-++.... ...
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~-~p~~n 184 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGR-PPADN 184 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSC-CCTTS
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCC-CCCCC
Confidence 6777776654 111 1111 1123567999999976555332 244555554321 000
Q ss_pred ---eeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCC---cEEEEeCCc---------------c-ceeeecccCCC
Q 005352 473 ---DAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADS---QVRILQGPN---------------V-IGKYKGLRRSG 530 (701)
Q Consensus 473 ---~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg---~I~iwd~~~---------------~-~~~~~~~~~~~ 530 (701)
...+... .......++|.|.++.++++-...+ .|.+..... . ...+.......
T Consensus 185 pf~~~~i~a~-----G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ 259 (354)
T 3a9g_A 185 PFPNSPIWSY-----GHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETW 259 (354)
T ss_dssp SSTTCCEEEE-----CCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCC
T ss_pred CCCCCcEEEE-----ccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCc
Confidence 0000000 1123568899985555555433322 244433211 0 01111101234
Q ss_pred CeEEEEEe-------cCCCEEEEEeCCCcEEEEeCCC
Q 005352 531 NQLSACFT-------SDGKHIVSAGEDSNVYMWNCIG 560 (701)
Q Consensus 531 ~v~~l~~s-------~dg~~l~sgs~Dg~I~iWd~~~ 560 (701)
....++|. .+|.++++.-..+.|...+++.
T Consensus 260 ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~ 296 (354)
T 3a9g_A 260 APSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGD 296 (354)
T ss_dssp CEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECG
T ss_pred CCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECC
Confidence 57778883 5676666666666777777654
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.70 E-value=1 Score=46.15 Aligned_cols=106 Identities=11% Similarity=0.105 Sum_probs=62.7
Q ss_pred CCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEe------cCCCcEEEEEEeeC---CCeEEEEecC------Cc
Q 005352 395 NYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV------DIRQIVTAVCYRPD---GQGGIVGSMM------GD 459 (701)
Q Consensus 395 ~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~------~~~~~i~~i~~sp~---g~~l~~gs~d------g~ 459 (701)
.....++|.| +++++++ ..+|.|++++ .++..... ........|+++|+ +..|+++... +.
T Consensus 31 ~~P~~ia~~p-dG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 31 EVPWALAFLP-DGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp SCEEEEEECT-TSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred CCceEEEEcC-CCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence 4578999999 8885554 5679999998 44322211 12356899999998 5666665442 67
Q ss_pred EEEEECCCCeeeeeeeEEeeccc--CCCCCCeeEEEEecCCCCEEEEEE
Q 005352 460 CRFYNVSDNHLELDAEICVHSKK--KAPCKRITGFQFLPQDSSKVMVSC 506 (701)
Q Consensus 460 v~i~d~~~~~~~~~~~~~~~~~~--~~~~~~i~~l~~~p~~~~~l~~~s 506 (701)
|..|+.....+.....+ +.... .........++|.| ++.++++.+
T Consensus 107 v~r~~~~~~~~~~~~~l-~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~G 153 (352)
T 2ism_A 107 VVRLRHLGERGVLDRVV-LDGIPARPHGLHSGGRIAFGP-DGMLYVTTG 153 (352)
T ss_dssp EEEEEECSSCEEEEEEE-EEEECCCTTCCCCCCCEEECT-TSCEEEECC
T ss_pred EEEEEeCCCCcCceEEE-EEeCCCCCCCCcCCceEEECC-CCCEEEEEC
Confidence 88888775432111111 11111 11223346899999 566555543
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=94.25 E-value=1.5 Score=46.57 Aligned_cols=165 Identities=16% Similarity=0.117 Sum_probs=90.1
Q ss_pred CCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEec---------CCCcEEEEEEeeC---CCeEEEEec------
Q 005352 395 NYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVD---------IRQIVTAVCYRPD---GQGGIVGSM------ 456 (701)
Q Consensus 395 ~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~---------~~~~i~~i~~sp~---g~~l~~gs~------ 456 (701)
.....|+|.| +++++++-...+.|++++..+++...... ....+..|+|+|+ +..|++...
T Consensus 27 ~~P~~~a~~p-dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 27 NKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp SSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCceEEEEcC-CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 4567999999 88877765433478888766554432221 2355779999996 566665543
Q ss_pred -------CCcEEEEECCCCeeee-eeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECC--------------------
Q 005352 457 -------MGDCRFYNVSDNHLEL-DAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD-------------------- 508 (701)
Q Consensus 457 -------dg~v~i~d~~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~d-------------------- 508 (701)
...|.-|++......+ ..+..+........+....|.|.| ++.++++.+..
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~p-DG~Lyv~~Gd~~~~~~~~~~~~~~~~~~p~~ 184 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGP-DQKIYYTIGDQGRNQLAYLFLPNQAQHTPTQ 184 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECT-TSCEEEEECCTTTTSGGGTTSCCCTTCCCCH
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECC-CCeEEEEECCCCCCCcccccccccccccccc
Confidence 1345556554321111 111111111122234578999999 56666665432
Q ss_pred ------------CcEEEEeCCccc-----------eeeecccCCCCeEEEEEecCCCEEEEE-eCCCcEEEEeCCCCC
Q 005352 509 ------------SQVRILQGPNVI-----------GKYKGLRRSGNQLSACFTSDGKHIVSA-GEDSNVYMWNCIGHE 562 (701)
Q Consensus 509 ------------g~I~iwd~~~~~-----------~~~~~~~~~~~v~~l~~s~dg~~l~sg-s~Dg~I~iWd~~~~~ 562 (701)
|.|.-++..... ...-.. .......++|+|+|.+.++- +.++.-.|.-+..+.
T Consensus 185 ~~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~-G~RNp~gla~dp~G~L~~~d~g~~~~dein~i~~G~ 261 (454)
T 1cru_A 185 QELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTL-GHRNPQGLAFTPNGKLLQSEQGPNSDDEINLIVKGG 261 (454)
T ss_dssp HHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEB-CCSEEEEEEECTTSCEEEEEECSSSCEEEEECCTTC
T ss_pred ccccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEE-CCCCcceEEECCCCCEEEEecCCCCCeEEEEecCCC
Confidence 334444432210 111111 23457889999988765553 445555666555443
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.07 E-value=1.2 Score=44.20 Aligned_cols=181 Identities=8% Similarity=0.023 Sum_probs=94.7
Q ss_pred eEEEEEC--CCcEEEEECCCCeeeeeec--CCCCeEEEEEeeCCCCEEEEEEcC----CcEEEEeCCCCcEEEEecCCC-
Q 005352 367 YLLSASI--DKTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSID----GKVRIWAVLSCHVVDWVDIRQ- 437 (701)
Q Consensus 367 ~l~s~s~--dg~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~~~~~l~sgs~d----g~v~iwd~~~~~~~~~~~~~~- 437 (701)
.++.|+. ...+.+||..+.+-...-. ....-.+++. - ++.+++.|+.+ ..+.+||+.+.+-........
T Consensus 14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~-~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~ 91 (306)
T 3ii7_A 14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF-W-DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTP 91 (306)
T ss_dssp EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE-E-TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSC
T ss_pred EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE-E-CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcc
Confidence 4455554 3578899998876543322 1111112222 2 66777887755 568899998876544332221
Q ss_pred --cEEEEEEeeCCCeEEEEecC------CcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEEC--
Q 005352 438 --IVTAVCYRPDGQGGIVGSMM------GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCA-- 507 (701)
Q Consensus 438 --~i~~i~~sp~g~~l~~gs~d------g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~-- 507 (701)
....+. -+++.++.|+.+ ..+.+||+.++.......+ ........ ++.. ++.+++.|+.
T Consensus 92 r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~------p~~r~~~~-~~~~--~~~iyv~GG~~~ 160 (306)
T 3ii7_A 92 RDSLAACA--AEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSM------LTQRCSHG-MVEA--NGLIYVCGGSLG 160 (306)
T ss_dssp CBSCEEEE--ETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCC------SSCCBSCE-EEEE--TTEEEEECCEES
T ss_pred ccceeEEE--ECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCC------cCCcceeE-EEEE--CCEEEEECCCCC
Confidence 122222 267777777765 4589999998875432111 11111112 2222 4567777664
Q ss_pred -------CCcEEEEeCCccceeee-cccCCCCeEEEEEecCCCEEEEEeCC-----CcEEEEeCCCC
Q 005352 508 -------DSQVRILQGPNVIGKYK-GLRRSGNQLSACFTSDGKHIVSAGED-----SNVYMWNCIGH 561 (701)
Q Consensus 508 -------dg~I~iwd~~~~~~~~~-~~~~~~~v~~l~~s~dg~~l~sgs~D-----g~I~iWd~~~~ 561 (701)
-..+.+||..+..-... .......-.+++. -++++++.|+.+ ..+.+||+.+.
T Consensus 161 ~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~yd~~~~ 226 (306)
T 3ii7_A 161 NNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVF-VKDKIFAVGGQNGLGGLDNVEYYDIKLN 226 (306)
T ss_dssp CTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEETTEEBCCEEEEETTTT
T ss_pred CCCcccccceEEEeCCCCCeEEECCCccchhhcceEEE-ECCEEEEEeCCCCCCCCceEEEeeCCCC
Confidence 34588888764321111 1111111112222 266677776643 35778887664
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=93.95 E-value=2 Score=43.59 Aligned_cols=151 Identities=7% Similarity=-0.053 Sum_probs=83.9
Q ss_pred CCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEe-------cCCCcEEEEEEeeC---CCeEEEEe---cCCcE
Q 005352 394 SNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV-------DIRQIVTAVCYRPD---GQGGIVGS---MMGDC 460 (701)
Q Consensus 394 ~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~-------~~~~~i~~i~~sp~---g~~l~~gs---~dg~v 460 (701)
-.....|+|.| ++.++++--..|.|++++..+++..... ........|+++|+ +..|++.. .++.|
T Consensus 31 L~~P~~ia~~p-dG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v 109 (347)
T 3das_A 31 LNSPWGLAPLP-GGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRI 109 (347)
T ss_dssp CSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEE
T ss_pred CCCceEEEEcC-CCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEE
Confidence 35678999999 8887776655899999987665543221 23456899999995 44555532 34556
Q ss_pred EEEECCCCe----eeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEEC-------------CCcEEEEeCCccc---
Q 005352 461 RFYNVSDNH----LELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCA-------------DSQVRILQGPNVI--- 520 (701)
Q Consensus 461 ~i~d~~~~~----~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~-------------dg~I~iwd~~~~~--- 520 (701)
.-|.+.... .....+..+........+....|.|.| ++.++++.+. .+.|.-++.....
T Consensus 110 ~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgp-DG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~ 188 (347)
T 3das_A 110 VRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGP-DKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPG 188 (347)
T ss_dssp EEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECT-TSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTT
T ss_pred EEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCC-CCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCC
Confidence 666665421 100111111111112233456799999 5666666442 3455555543210
Q ss_pred -----eeeecccCCCCeEEEEEecCCCEEEEE
Q 005352 521 -----GKYKGLRRSGNQLSACFTSDGKHIVSA 547 (701)
Q Consensus 521 -----~~~~~~~~~~~v~~l~~s~dg~~l~sg 547 (701)
.......+ .....++|+|+|.+.++=
T Consensus 189 nPf~~~~i~a~G~-RNp~Gla~dp~G~L~~~d 219 (347)
T 3das_A 189 NPFPGSPVYSYGH-RNVQGLAWDDKQRLFASE 219 (347)
T ss_dssp CSSTTCCEEEBCC-SBCCEEEECTTCCEEEEE
T ss_pred CCCCCCeEEeeCC-CCcceEEECCCCCEEEEe
Confidence 01111112 345678899887755543
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=93.85 E-value=6.3 Score=39.94 Aligned_cols=239 Identities=10% Similarity=0.035 Sum_probs=119.9
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCC
Q 005352 250 DGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSE 329 (701)
Q Consensus 250 ~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (701)
-...+.|+|.|||.++++--..|.|++++...++......++
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~-------------------------------------- 72 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVP-------------------------------------- 72 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECT--------------------------------------
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccC--------------------------------------
Confidence 445789999999998777765898888875443211000000
Q ss_pred ccEEEcCCccccccCCCeEEEcCCccCeEEEEEecC----CeEEEE---ECCCcEEEEECCCC----------eee-eee
Q 005352 330 SACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN----NYLLSA---SIDKTVRLWRVGND----------HCL-RVF 391 (701)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~----~~l~s~---s~dg~I~iWd~~~~----------~~~-~~~ 391 (701)
..+.........|+++|+ +.|+.. ..++.|.-|.+..+ +.+ ..+
T Consensus 73 ------------------~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~ 134 (347)
T 3das_A 73 ------------------GVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGI 134 (347)
T ss_dssp ------------------TCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEE
T ss_pred ------------------ceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcC
Confidence 001123356788899884 533332 23445655655441 111 112
Q ss_pred c--CCCCeEEEEEeeCCCCEEEEEEc-------------CCcEEEEeCCCC---------cEEEEecCCCcEEEEEEeeC
Q 005352 392 P--HSNYVTCVHFNPVDDNYFISGSI-------------DGKVRIWAVLSC---------HVVDWVDIRQIVTAVCYRPD 447 (701)
Q Consensus 392 ~--h~~~V~~l~f~p~~~~~l~sgs~-------------dg~v~iwd~~~~---------~~~~~~~~~~~i~~i~~sp~ 447 (701)
. .......|+|.| ++.++++.+. .|.|.-.+.... ..+...++ .....++|+|+
T Consensus 135 p~~~~H~g~~l~fgp-DG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~~~i~a~G~-RNp~Gla~dp~ 212 (347)
T 3das_A 135 PKGVIHNGGRIAFGP-DKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFPGSPVYSYGH-RNVQGLAWDDK 212 (347)
T ss_dssp CCCSSCCCCCEEECT-TSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSSTTCCEEEBCC-SBCCEEEECTT
T ss_pred CCCCCccCccccCCC-CCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCCCCCeEEeeCC-CCcceEEECCC
Confidence 2 122356799999 8887777542 244444454322 11222233 24567899998
Q ss_pred CCeEEEEe-cCCcEEEEECCCCeee----eee-----eEEe-ecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeC
Q 005352 448 GQGGIVGS-MMGDCRFYNVSDNHLE----LDA-----EICV-HSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQG 516 (701)
Q Consensus 448 g~~l~~gs-~dg~v~i~d~~~~~~~----~~~-----~~~~-~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~ 516 (701)
|...++=. .++.-.|.-+..+... ... .+.. ......+.....+++|.. +.+++..-..+.|....+
T Consensus 213 G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~~--g~~~~~~l~~~~l~~v~~ 290 (347)
T 3das_A 213 QRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYAE--GSVWMAGLRGERLWRIPL 290 (347)
T ss_dssp CCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEEET--TEEEEEESTTCSEEEEEE
T ss_pred CCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcceEEEc--CceeeccccCCEEEEEEe
Confidence 76554432 2222233322222110 000 0000 000000112456777764 455655555666766655
Q ss_pred Cccce----eeecccCCCCeEEEEEecCCCEEEEEe
Q 005352 517 PNVIG----KYKGLRRSGNQLSACFTSDGKHIVSAG 548 (701)
Q Consensus 517 ~~~~~----~~~~~~~~~~v~~l~~s~dg~~l~sgs 548 (701)
..... ..........+..++..|||.++++..
T Consensus 291 ~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 291 KGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp ETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred cCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 42211 111112346789999999997666653
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.83 E-value=1.8 Score=42.80 Aligned_cols=174 Identities=9% Similarity=0.008 Sum_probs=90.2
Q ss_pred CcEEEEECCCCeeeeeec--CCCCeEEEEEeeCCCCEEEEEEcC-----CcEEEEeCCCCc---EEEEecCC---CcEEE
Q 005352 375 KTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSID-----GKVRIWAVLSCH---VVDWVDIR---QIVTA 441 (701)
Q Consensus 375 g~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~~~~~l~sgs~d-----g~v~iwd~~~~~---~~~~~~~~---~~i~~ 441 (701)
..+.+||+.+.+....-. ....-.+++. . ++.+++.|+.+ ..+.+||+.+.+ -....... .....
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~ 108 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRYVASVS-L-HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGA 108 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEE-E-TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEE
T ss_pred eEEEEEcCCCCeEEeCCCCChhhccccEEE-E-CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeE
Confidence 468889988876443222 1111112222 2 66777777755 468999998876 33322211 11222
Q ss_pred EEEeeCCCeEEEEecC-----CcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECC-----CcE
Q 005352 442 VCYRPDGQGGIVGSMM-----GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD-----SQV 511 (701)
Q Consensus 442 i~~sp~g~~l~~gs~d-----g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~d-----g~I 511 (701)
+. .+++.++.|+.+ ..+.+||+.++.......+ . ........+.+ ++.+++.|+.+ ..+
T Consensus 109 ~~--~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~-----p-~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~ 177 (301)
T 2vpj_A 109 TT--LGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDM-----Q-TAREGAGLVVA---SGVIYCLGGYDGLNILNSV 177 (301)
T ss_dssp EE--ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEEC-----S-SCCBSCEEEEE---TTEEEEECCBCSSCBCCCE
T ss_pred EE--ECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCC-----C-CCcccceEEEE---CCEEEEECCCCCCcccceE
Confidence 22 266777777653 3588999988776432211 1 11111122222 46777777754 458
Q ss_pred EEEeCCccceeeec-ccCCCCeEEEEEecCCCEEEEEeCC-----CcEEEEeCCCCC
Q 005352 512 RILQGPNVIGKYKG-LRRSGNQLSACFTSDGKHIVSAGED-----SNVYMWNCIGHE 562 (701)
Q Consensus 512 ~iwd~~~~~~~~~~-~~~~~~v~~l~~s~dg~~l~sgs~D-----g~I~iWd~~~~~ 562 (701)
.+||..+..-.... ......-.+++ ..++++++.|+.+ ..+.+||+.+.+
T Consensus 178 ~~~d~~~~~W~~~~~~p~~r~~~~~~-~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 233 (301)
T 2vpj_A 178 EKYDPHTGHWTNVTPMATKRSGAGVA-LLNDHIYVVGGFDGTAHLSSVEAYNIRTDS 233 (301)
T ss_dssp EEEETTTTEEEEECCCSSCCBSCEEE-EETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred EEEeCCCCcEEeCCCCCcccccceEE-EECCEEEEEeCCCCCcccceEEEEeCCCCc
Confidence 88887643221111 11111111122 2356677777654 357888876543
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.82 E-value=1.4 Score=43.56 Aligned_cols=173 Identities=14% Similarity=0.154 Sum_probs=88.9
Q ss_pred CcEEEEECCCCeeeeeec--CCCCeEEEEEeeCCCCEEEEEEcC-----CcEEEEeCCCCcEEEEecCCC---cEEEEEE
Q 005352 375 KTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSID-----GKVRIWAVLSCHVVDWVDIRQ---IVTAVCY 444 (701)
Q Consensus 375 g~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~~~~~l~sgs~d-----g~v~iwd~~~~~~~~~~~~~~---~i~~i~~ 444 (701)
..+.+||+.+.+-...-. ....-.+++. - ++.+++.|+.+ ..+.+||..+.+-........ ....+.
T Consensus 30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~- 106 (302)
T 2xn4_A 30 RSVECYDFKEERWHQVAELPSRRCRAGMVY-M-AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAV- 106 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEE-E-TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-
T ss_pred CcEEEEcCcCCcEeEcccCCcccccceEEE-E-CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEE-
Confidence 457888888776433321 1111112222 2 66777777755 358899998876544332221 122222
Q ss_pred eeCCCeEEEEecCC-----cEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECC-------CcEE
Q 005352 445 RPDGQGGIVGSMMG-----DCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD-------SQVR 512 (701)
Q Consensus 445 sp~g~~l~~gs~dg-----~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~d-------g~I~ 512 (701)
.+++.++.|+.++ .+.+||+.++.......+ ....... +++.. ++.+++.|+.+ ..+.
T Consensus 107 -~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~------p~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~~ 176 (302)
T 2xn4_A 107 -LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPM------NTRRSSV-GVGVV--GGLLYAVGGYDVASRQCLSTVE 176 (302)
T ss_dssp -ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCC------SSCCBSC-EEEEE--TTEEEEECCEETTTTEECCCEE
T ss_pred -ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCC------CCcccCc-eEEEE--CCEEEEEeCCCCCCCccccEEE
Confidence 2677777777653 478899988775432211 1111111 22222 45677776642 3588
Q ss_pred EEeCCccceeee-cccCCCCeEEEEEecCCCEEEEEeCC-----CcEEEEeCCCC
Q 005352 513 ILQGPNVIGKYK-GLRRSGNQLSACFTSDGKHIVSAGED-----SNVYMWNCIGH 561 (701)
Q Consensus 513 iwd~~~~~~~~~-~~~~~~~v~~l~~s~dg~~l~sgs~D-----g~I~iWd~~~~ 561 (701)
+||..+..-... .......-.+++ .-++++++.|+.+ ..+.+||+.+.
T Consensus 177 ~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~ 230 (302)
T 2xn4_A 177 CYNATTNEWTYIAEMSTRRSGAGVG-VLNNLLYAVGGHDGPLVRKSVEVYDPTTN 230 (302)
T ss_dssp EEETTTTEEEEECCCSSCCBSCEEE-EETTEEEEECCBSSSSBCCCEEEEETTTT
T ss_pred EEeCCCCcEEECCCCccccccccEE-EECCEEEEECCCCCCcccceEEEEeCCCC
Confidence 888764321111 111111111222 2266777777654 35778887654
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.50 E-value=4.3 Score=40.31 Aligned_cols=181 Identities=9% Similarity=0.070 Sum_probs=93.0
Q ss_pred eEEEEECCCcEEEEECCCCeeee-eecCC-CCeEEEEEeeCCCCEEEEEEc----C-------CcEEEEeCCCCcEEEEe
Q 005352 367 YLLSASIDKTVRLWRVGNDHCLR-VFPHS-NYVTCVHFNPVDDNYFISGSI----D-------GKVRIWAVLSCHVVDWV 433 (701)
Q Consensus 367 ~l~s~s~dg~I~iWd~~~~~~~~-~~~h~-~~V~~l~f~p~~~~~l~sgs~----d-------g~v~iwd~~~~~~~~~~ 433 (701)
+++.|+ ..+.+||..+++-.. .+... .......... ++.+++.|+. + ..+.+||..+.+-....
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~ 83 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTK-ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMP 83 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECT-TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECC
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEE-CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECC
Confidence 344555 578999998887543 11111 1222222233 7788888884 1 12778899887654332
Q ss_pred cCCCcEE--EEEEeeCCCeEEEEecC--------CcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEE
Q 005352 434 DIRQIVT--AVCYRPDGQGGIVGSMM--------GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVM 503 (701)
Q Consensus 434 ~~~~~i~--~i~~sp~g~~l~~gs~d--------g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~ 503 (701)
....+-. +++. -+++.++.|+.+ ..+.+||+.+++...... ......... ++.. ++.+++
T Consensus 84 ~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~------~p~~r~~~~-~~~~--~~~iyv 153 (315)
T 4asc_A 84 PLPSPRCLFGLGE-ALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDP------LPYVVYGHT-VLSH--MDLVYV 153 (315)
T ss_dssp CBSSCEESCEEEE-ETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCC------CSSCCBSCE-EEEE--TTEEEE
T ss_pred CCCcchhceeEEE-ECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCC------CCCccccee-EEEE--CCEEEE
Confidence 2222211 1222 256666777642 458999998876543221 111111112 2222 467777
Q ss_pred EEEC------CCcEEEEeCCccceeeec-ccCCCCeEEEEEecCCCEEEEEeCCC-----cEEEEeCCCC
Q 005352 504 VSCA------DSQVRILQGPNVIGKYKG-LRRSGNQLSACFTSDGKHIVSAGEDS-----NVYMWNCIGH 561 (701)
Q Consensus 504 ~~s~------dg~I~iwd~~~~~~~~~~-~~~~~~v~~l~~s~dg~~l~sgs~Dg-----~I~iWd~~~~ 561 (701)
.|+. -..+.+||..+..-.... ......-.+++ .-++++++.|+.++ .+.+||+.+.
T Consensus 154 ~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~ 222 (315)
T 4asc_A 154 IGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGAT-VHDGRIIVAAGVTDTGLTSSAEVYSITDN 222 (315)
T ss_dssp ECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEE-EETTEEEEEEEECSSSEEEEEEEEETTTT
T ss_pred EeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEE-EECCEEEEEeccCCCCccceEEEEECCCC
Confidence 7776 246888987643211111 11111111222 23667777777654 4777777654
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=93.49 E-value=11 Score=41.65 Aligned_cols=200 Identities=6% Similarity=-0.082 Sum_probs=121.0
Q ss_pred cCeEEEEEecCC-eEE-EEECCCcEEEEECCCCeeeeeec-------CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCC
Q 005352 355 GEILDLSWSKNN-YLL-SASIDKTVRLWRVGNDHCLRVFP-------HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVL 425 (701)
Q Consensus 355 ~~I~~l~~s~~~-~l~-s~s~dg~I~iWd~~~~~~~~~~~-------h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~ 425 (701)
..+..|+|.+.+ .|+ +=...+.|+.+++........+. .-..+..+++....++++++-+..+.|.+.++.
T Consensus 340 ~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~ 419 (628)
T 4a0p_A 340 RNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD 419 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC
Confidence 457789998865 444 44456788888876544333332 134688999998445566677778889999987
Q ss_pred CCcEEEEe-cCCCcEEEEEEeeCCCeEEEEe-cCC--cEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCE
Q 005352 426 SCHVVDWV-DIRQIVTAVCYRPDGQGGIVGS-MMG--DCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSK 501 (701)
Q Consensus 426 ~~~~~~~~-~~~~~i~~i~~sp~g~~l~~gs-~dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~ 501 (701)
......+. ..-.....|++.|...+|+... ... .|...++........ . .......++|++.+..+.+
T Consensus 420 G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l----~----~~~l~~P~gla~D~~~~~L 491 (628)
T 4a0p_A 420 GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVL----F----FSGLSKPIALALDSRLGKL 491 (628)
T ss_dssp SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEEE----E----CSSCSCEEEEEEETTTTEE
T ss_pred CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEEE----E----eccCCCccEEEEeCCCCEE
Confidence 54332332 2346789999999444444433 332 566666664432211 1 1123457899999854455
Q ss_pred EEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCC
Q 005352 502 VMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEE 563 (701)
Q Consensus 502 l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~ 563 (701)
+.+-+..+.|..+++..................+++.. +..+++=.....|...|..+++.
T Consensus 492 Yw~D~~~~~I~~~~~dG~~r~~~~~~~~~~P~glav~~-~~ly~tD~~~~~i~~~~k~~G~~ 552 (628)
T 4a0p_A 492 FWADSDLRRIESSDLSGANRIVLEDSNILQPVGLTVFE-NWLYWIDKQQQMIEKIDMTGREG 552 (628)
T ss_dssp EEEETTTTEEEEEETTSCSCEEEECSSCSCEEEEEEET-TEEEEEETTTTEEEEEETTSSSC
T ss_pred EEEeCCCCEEEEEeCCCCceEEEEcCCCCCcEEEEEEC-CEEEEEECCCCeEEEEECcCCCC
Confidence 55555578899998753322221112334567787755 44444545667788888776663
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.15 E-value=0.16 Score=51.59 Aligned_cols=110 Identities=10% Similarity=0.027 Sum_probs=70.6
Q ss_pred CCeEEEEECCCcEEEEECCCCeeeeeecCC--CCeEEEEEee-CCCCEEEEE--EcCCcEEEEeCCCCcEEEEecC----
Q 005352 365 NNYLLSASIDKTVRLWRVGNDHCLRVFPHS--NYVTCVHFNP-VDDNYFISG--SIDGKVRIWAVLSCHVVDWVDI---- 435 (701)
Q Consensus 365 ~~~l~s~s~dg~I~iWd~~~~~~~~~~~h~--~~V~~l~f~p-~~~~~l~sg--s~dg~v~iwd~~~~~~~~~~~~---- 435 (701)
++.++.++.||.|.-.|..+|+.+..+... .++....-.. ..+..++.+ +.||.|..++..++........
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv 89 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence 458899999999999999999999998744 2332211000 012234433 5799999999988754422211
Q ss_pred -CCcEEE---EEE-e----eCCCeEEEEecCCcEEEEECCCCeeeeee
Q 005352 436 -RQIVTA---VCY-R----PDGQGGIVGSMMGDCRFYNVSDNHLELDA 474 (701)
Q Consensus 436 -~~~i~~---i~~-s----p~g~~l~~gs~dg~v~i~d~~~~~~~~~~ 474 (701)
..++.. ..+ . ..+..+++|+.+|.+...|+.+++.....
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~ 137 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAF 137 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEE
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEE
Confidence 112211 000 0 14568899999999999999999877544
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=92.67 E-value=0.19 Score=47.14 Aligned_cols=101 Identities=10% Similarity=0.066 Sum_probs=64.6
Q ss_pred cCeEEEEEecCCeEEEEECCCcEEEEECCCCeeeeeecCCCC--------eEEEEEeeCCCCEEEEEEcCCcEEEEeCCC
Q 005352 355 GEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNY--------VTCVHFNPVDDNYFISGSIDGKVRIWAVLS 426 (701)
Q Consensus 355 ~~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~--------V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~ 426 (701)
..+.+++|+|++.|.+. .+|.+.-.+..+.....-+..... ..++.|.| ++.+.++ .||.|+-++-.+
T Consensus 41 ~~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~-~G~LYav--~dG~iyr~~pP~ 116 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDP-NGYLYAV--SKDKLYKASPPQ 116 (236)
T ss_dssp TTCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECT-TSCEEEE--ETTEEEEESCCC
T ss_pred ccceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEecccccccceEEEECC-CCCEEEe--CCCEEEEeCCCc
Confidence 36779999998866666 777766666544222111111112 47889998 8887777 579988887644
Q ss_pred CcEEEEe------c--CCCcEEEEEEeeCCCeEEEEecCCcEE
Q 005352 427 CHVVDWV------D--IRQIVTAVCYRPDGQGGIVGSMMGDCR 461 (701)
Q Consensus 427 ~~~~~~~------~--~~~~i~~i~~sp~g~~l~~gs~dg~v~ 461 (701)
.....+. . .=..+..|.+.|+|...++. ++.++
T Consensus 117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~ly 157 (236)
T 1tl2_A 117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFY 157 (236)
T ss_dssp STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred CCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEE
Confidence 3222221 1 11457999999999877777 77754
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=92.66 E-value=1.8 Score=44.12 Aligned_cols=175 Identities=7% Similarity=0.012 Sum_probs=86.0
Q ss_pred CcEEEEECCCCeeeeeecCC---CCeEEEEEeeCCCCEEEEEEcC-----------------------------------
Q 005352 375 KTVRLWRVGNDHCLRVFPHS---NYVTCVHFNPVDDNYFISGSID----------------------------------- 416 (701)
Q Consensus 375 g~I~iWd~~~~~~~~~~~h~---~~V~~l~f~p~~~~~l~sgs~d----------------------------------- 416 (701)
..+.+||+.+.+-...-... ..-.+++. . ++.+++.|+.+
T Consensus 86 ~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (357)
T 2uvk_A 86 NDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV-H-NGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAED 163 (357)
T ss_dssp CCEEEEETTTTEEEECSCCCSSCCSSEEEEE-E-TTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGG
T ss_pred ccEEEEeCCCCcEEECCCCCCcccccceEEE-E-CCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccc
Confidence 46889999887644332211 11112222 3 77888888754
Q ss_pred ----CcEEEEeCCCCcEEEEecCCC--cE-EEEEEeeCCCeEEEEec------CCcEEEEEC--CCCeeeeeeeEEeecc
Q 005352 417 ----GKVRIWAVLSCHVVDWVDIRQ--IV-TAVCYRPDGQGGIVGSM------MGDCRFYNV--SDNHLELDAEICVHSK 481 (701)
Q Consensus 417 ----g~v~iwd~~~~~~~~~~~~~~--~i-~~i~~sp~g~~l~~gs~------dg~v~i~d~--~~~~~~~~~~~~~~~~ 481 (701)
..+.+||+.+.+-........ .- .+++. -+++.++.|+. ...+..||+ .+........
T Consensus 164 ~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~------ 236 (357)
T 2uvk_A 164 YFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAP------ 236 (357)
T ss_dssp GCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEE-ETTEEEEECCEEETTEECCCEEEEECC---CEEEECCC------
T ss_pred cCCcccEEEEeCCCCcEEECCCCCCCCcccccEEE-ECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCC------
Confidence 478999998876443332221 11 22222 25666677654 345777887 4444332111
Q ss_pred cCCCCCCee-EEEEecCCCCEEEEEECC----------------------CcEEEEeCCccc--eeeecccCCCCeEEEE
Q 005352 482 KKAPCKRIT-GFQFLPQDSSKVMVSCAD----------------------SQVRILQGPNVI--GKYKGLRRSGNQLSAC 536 (701)
Q Consensus 482 ~~~~~~~i~-~l~~~p~~~~~l~~~s~d----------------------g~I~iwd~~~~~--~~~~~~~~~~~v~~l~ 536 (701)
......... .+... ++.+++.|+.+ ..+.+||..+.. ..-........ ..+
T Consensus 237 ~~~~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~--~~~ 312 (357)
T 2uvk_A 237 VSSPDGVAGGFAGIS--NDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAY--GVS 312 (357)
T ss_dssp SSTTTCCBSCEEEEE--TTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBS--SEE
T ss_pred CCCCcccccceEEEE--CCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCccc--cee
Confidence 111111111 12222 46777777642 257788876422 11111111111 222
Q ss_pred EecCCCEEEEEeCCC------cEEEEeCCCCC
Q 005352 537 FTSDGKHIVSAGEDS------NVYMWNCIGHE 562 (701)
Q Consensus 537 ~s~dg~~l~sgs~Dg------~I~iWd~~~~~ 562 (701)
...++++++.|+.++ .|.++++++++
T Consensus 313 ~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~ 344 (357)
T 2uvk_A 313 LPWNNSLLIIGGETAGGKAVTDSVLITVKDNK 344 (357)
T ss_dssp EEETTEEEEEEEECGGGCEEEEEEEEEC-CCS
T ss_pred EEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcE
Confidence 334777888888553 35666877765
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=92.65 E-value=2.6 Score=43.07 Aligned_cols=147 Identities=10% Similarity=0.043 Sum_probs=78.5
Q ss_pred CCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEE-E-------ecCCCcEEEEEEeeC---CCeEEEEec-------
Q 005352 395 NYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD-W-------VDIRQIVTAVCYRPD---GQGGIVGSM------- 456 (701)
Q Consensus 395 ~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~-~-------~~~~~~i~~i~~sp~---g~~l~~gs~------- 456 (701)
.....|+|.| +++.|+.+...|.|++++.. +.... + .........|+++|+ +..|++...
T Consensus 18 ~~P~~i~~~p-dG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~ 95 (353)
T 2g8s_A 18 DHPWALAFLP-DNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK 95 (353)
T ss_dssp SSEEEEEECS-TTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred CCcEEEEEcC-CCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence 3568999999 88834445568999999853 33211 1 112345789999996 555555532
Q ss_pred -CCcEEEEECCCCeeeee-eeEEeeccc--CCCCCCeeEEEEecCCCCEEEEEEC-------------CCcEEEEeCCcc
Q 005352 457 -MGDCRFYNVSDNHLELD-AEICVHSKK--KAPCKRITGFQFLPQDSSKVMVSCA-------------DSQVRILQGPNV 519 (701)
Q Consensus 457 -dg~v~i~d~~~~~~~~~-~~~~~~~~~--~~~~~~i~~l~~~p~~~~~l~~~s~-------------dg~I~iwd~~~~ 519 (701)
...|..|++......+. .+..+.... .........+.|.| ++.++++.+. .+.|.-++....
T Consensus 96 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~ 174 (353)
T 2g8s_A 96 AGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDG-KGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGE 174 (353)
T ss_dssp EEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECS-SSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSC
T ss_pred ceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECC-CCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCC
Confidence 23566666654321111 111111111 11122346799999 5655555433 245666665422
Q ss_pred --------------ceeeecccCCCCeEEEEEec-CCCEEEE
Q 005352 520 --------------IGKYKGLRRSGNQLSACFTS-DGKHIVS 546 (701)
Q Consensus 520 --------------~~~~~~~~~~~~v~~l~~s~-dg~~l~s 546 (701)
...+. . .......++|+| +|+++++
T Consensus 175 ~p~~npf~~~~~~~~~i~a-~-G~rnp~gl~~d~~~g~l~~~ 214 (353)
T 2g8s_A 175 IPDDNPFIKESGVRAEIWS-Y-GIRNPQGMAMNPWSNALWLN 214 (353)
T ss_dssp CCTTCTTTTSTTSCTTEEE-E-CCSEEEEEEEETTTTEEEEE
T ss_pred CCCCCCCcCCCCCCccEEE-E-cCcCccceEEECCCCCEEEE
Confidence 11111 1 224578899999 5554443
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=91.83 E-value=3.2 Score=49.76 Aligned_cols=190 Identities=8% Similarity=0.103 Sum_probs=115.2
Q ss_pred EecCCeEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCC-cEEEEecC-----
Q 005352 362 WSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSC-HVVDWVDI----- 435 (701)
Q Consensus 362 ~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~-~~~~~~~~----- 435 (701)
.+|...+++--...++.|+|+.+...++.+..+.+|.--.|- +.+.|+..+ +..|..|++... .++..+..
T Consensus 73 MnP~~~iiALrag~~lQiFnl~~k~klks~~~~e~VvfWkWi--s~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~ 149 (1630)
T 1xi4_A 73 MNPASKVIALKAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWI--SLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLA 149 (1630)
T ss_pred cCCCcceEEEecCCeEEEeehHHhhhhcccccCCCceEEEec--CCCeeEEEc-CCeEEEeccCCCCccHHHHhcchhcc
Confidence 355553333334789999999999999999888888887886 456666655 567999999642 22222221
Q ss_pred CCcEEEEEEeeCCCeEEEEe-------cCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEe--cCCCCEEEEEE
Q 005352 436 RQIVTAVCYRPDGQGGIVGS-------MMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFL--PQDSSKVMVSC 506 (701)
Q Consensus 436 ~~~i~~i~~sp~g~~l~~gs-------~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~--p~~~~~l~~~s 506 (701)
...|..-..+++.++++..+ ..|.+.+|..+.+..+. ..+|......+... +....++..+.
T Consensus 150 ~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~---------iegha~~F~~~~~~~~~~~~~l~~f~~ 220 (1630)
T 1xi4_A 150 GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQP---------IEGHAASFAQFKMEGNAEESTLFCFAV 220 (1630)
T ss_pred cCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchh---------hhHhHhhhheeccCCCCCCceEEEEEE
Confidence 34577777788888887643 35778888887653221 11111111111111 10111222111
Q ss_pred C---CCcEEEEeCCcc---ceeee---------cccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCC
Q 005352 507 A---DSQVRILQGPNV---IGKYK---------GLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEE 563 (701)
Q Consensus 507 ~---dg~I~iwd~~~~---~~~~~---------~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~ 563 (701)
. .++++|.++... ...|. ......-..++..++....+..-+.-|.|++||+.++..
T Consensus 221 ~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~ 292 (1630)
T 1xi4_A 221 RGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTC 292 (1630)
T ss_pred ecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchh
Confidence 1 368888887532 11111 111234456778888888888889999999999999874
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=90.58 E-value=4.6 Score=40.01 Aligned_cols=172 Identities=10% Similarity=0.014 Sum_probs=88.9
Q ss_pred CcEEEEECCCCeeeeeec--CCCCeEEEEEeeCCCCEEEEEEc----C-----CcEEEEeCCCCcEEEEecCC---CcEE
Q 005352 375 KTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSI----D-----GKVRIWAVLSCHVVDWVDIR---QIVT 440 (701)
Q Consensus 375 g~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~~~~~l~sgs~----d-----g~v~iwd~~~~~~~~~~~~~---~~i~ 440 (701)
..+.+||..+.+....-. ....-.+++.. ++.+++.|+. + ..+.+||+.+.+-....... ....
T Consensus 39 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~ 116 (308)
T 1zgk_A 39 SYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIG 116 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCE
T ss_pred ceEEEEcCCCCeEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccE
Confidence 458888888776443321 11111122222 5667777765 2 46889999887644332211 1222
Q ss_pred EEEEeeCCCeEEEEecC-----CcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECC-----Cc
Q 005352 441 AVCYRPDGQGGIVGSMM-----GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD-----SQ 510 (701)
Q Consensus 441 ~i~~sp~g~~l~~gs~d-----g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~d-----g~ 510 (701)
.+.+ +++.++.|+.+ ..+.+||+.++.......+ .........+.+ ++.+++.|+.+ ..
T Consensus 117 ~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~------p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~ 185 (308)
T 1zgk_A 117 VGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPM------LTRRIGVGVAVL---NRLLYAVGGFDGTNRLNS 185 (308)
T ss_dssp EEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCC------SSCCBSCEEEEE---TTEEEEECCBCSSCBCCC
T ss_pred EEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCC------CccccceEEEEE---CCEEEEEeCCCCCCcCce
Confidence 2222 66777777643 4588999988775432211 111111122222 46777777654 45
Q ss_pred EEEEeCCccceeee--cccCCCCeEEEEEecCCCEEEEEeCC-----CcEEEEeCCCC
Q 005352 511 VRILQGPNVIGKYK--GLRRSGNQLSACFTSDGKHIVSAGED-----SNVYMWNCIGH 561 (701)
Q Consensus 511 I~iwd~~~~~~~~~--~~~~~~~v~~l~~s~dg~~l~sgs~D-----g~I~iWd~~~~ 561 (701)
+.+||..+..-... ..........+.+ ++++++.|+.+ ..+.+||+.+.
T Consensus 186 ~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~ 241 (308)
T 1zgk_A 186 AECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETE 241 (308)
T ss_dssp EEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred EEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCC
Confidence 88888764321111 1111111122222 66677777654 45788887654
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=90.53 E-value=7.5 Score=38.55 Aligned_cols=174 Identities=8% Similarity=0.046 Sum_probs=87.3
Q ss_pred cEEEEECCCCeeeee-ecC-CCCeEEEEEeeCCCCEEEEEEc----CC-------cEEEEeCCCCcEEEEecCCC---cE
Q 005352 376 TVRLWRVGNDHCLRV-FPH-SNYVTCVHFNPVDDNYFISGSI----DG-------KVRIWAVLSCHVVDWVDIRQ---IV 439 (701)
Q Consensus 376 ~I~iWd~~~~~~~~~-~~h-~~~V~~l~f~p~~~~~l~sgs~----dg-------~v~iwd~~~~~~~~~~~~~~---~i 439 (701)
.+..||..+++.... ... ........... ++.+++.|+. ++ .+.+||..+.+-........ ..
T Consensus 25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~ 103 (318)
T 2woz_A 25 AAVAYDPMENECYLTALAEQIPRNHSSIVTQ-QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLF 103 (318)
T ss_dssp EEEEEETTTTEEEEEEECTTSCSSEEEEECS-SSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSC
T ss_pred ceEEECCCCCceecccCCccCCccceEEEEE-CCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcccccc
Confidence 378899988875442 111 11112222233 6778888873 12 17788988776543322211 12
Q ss_pred EEEEEeeCCCeEEEEecC-------CcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEEC-----
Q 005352 440 TAVCYRPDGQGGIVGSMM-------GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCA----- 507 (701)
Q Consensus 440 ~~i~~sp~g~~l~~gs~d-------g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~----- 507 (701)
..+. -+++.++.|+.+ ..+.+||+.+++......+ .. ..... +++. . ++.+++.|+.
T Consensus 104 ~~~~--~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~--p~----~r~~~-~~~~-~-~~~iyv~GG~~~~~~ 172 (318)
T 2woz_A 104 GLGE--VDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNL--PI----KVYGH-NVIS-H-NGMIYCLGGKTDDKK 172 (318)
T ss_dssp EEEE--ETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCC--SS----CEESC-EEEE-E-TTEEEEECCEESSSC
T ss_pred ceEE--ECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCC--CC----ccccc-EEEE-E-CCEEEEEcCCCCCCC
Confidence 2222 266777777754 3488899988775432211 00 00111 1222 2 5677777764
Q ss_pred -CCcEEEEeCCccceeee-cccCCCCeEEEEEecCCCEEEEEeCC-----CcEEEEeCCCCC
Q 005352 508 -DSQVRILQGPNVIGKYK-GLRRSGNQLSACFTSDGKHIVSAGED-----SNVYMWNCIGHE 562 (701)
Q Consensus 508 -dg~I~iwd~~~~~~~~~-~~~~~~~v~~l~~s~dg~~l~sgs~D-----g~I~iWd~~~~~ 562 (701)
-..+.+||..+..-... .......-.+++. -++++++.|+.+ ..+.+||+.+.+
T Consensus 173 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 233 (318)
T 2woz_A 173 CTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNK 233 (318)
T ss_dssp BCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred ccceEEEEcCCCCEEEECCCCCCCcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCe
Confidence 24588899864321111 1111111112222 366777777643 246778876653
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=90.49 E-value=17 Score=37.24 Aligned_cols=158 Identities=7% Similarity=-0.102 Sum_probs=78.3
Q ss_pred cCeEEEEEec--CCeEEEEECCC----cEEEEECCCCeeeeeec---------------CCCCeEEEEEeeCC-CCEEEE
Q 005352 355 GEILDLSWSK--NNYLLSASIDK----TVRLWRVGNDHCLRVFP---------------HSNYVTCVHFNPVD-DNYFIS 412 (701)
Q Consensus 355 ~~I~~l~~s~--~~~l~s~s~dg----~I~iWd~~~~~~~~~~~---------------h~~~V~~l~f~p~~-~~~l~s 412 (701)
..|.+|++.| .+.|..++..+ .|...+ ..++.-..+. ....|.++++.|.+ ...+.+
T Consensus 55 ~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~ 133 (394)
T 3b7f_A 55 HTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYA 133 (394)
T ss_dssp SEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEE
T ss_pred CceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEE
Confidence 4688999988 44555555554 343332 2222211111 01247789998744 556666
Q ss_pred EEcCCcEEEEeCCCCcEEEEec-------------------CCCcEEEEEEeeC-CCeEEEEecCCcEEEEECCCCeeee
Q 005352 413 GSIDGKVRIWAVLSCHVVDWVD-------------------IRQIVTAVCYRPD-GQGGIVGSMMGDCRFYNVSDNHLEL 472 (701)
Q Consensus 413 gs~dg~v~iwd~~~~~~~~~~~-------------------~~~~i~~i~~sp~-g~~l~~gs~dg~v~i~d~~~~~~~~ 472 (701)
+...+.|...+-....-..... ....+.+|.++|. ...++++...+.|...+-.......
T Consensus 134 g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~DgG~tW~~ 213 (394)
T 3b7f_A 134 GTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFESTDAGTDWKP 213 (394)
T ss_dssp EEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEESSTTSSCEE
T ss_pred EecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEECCCCCCceE
Confidence 6666655554322222111110 1235788999883 4566777655544443322222111
Q ss_pred eeeEEeeccc-C----CCCCCeeEEEEecCCCCEEEEEECCCcEEEEe
Q 005352 473 DAEICVHSKK-K----APCKRITGFQFLPQDSSKVMVSCADSQVRILQ 515 (701)
Q Consensus 473 ~~~~~~~~~~-~----~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd 515 (701)
... ...... . .....+..+.+.|.++..|+++...+ |...+
T Consensus 214 ~~~-~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~ 259 (394)
T 3b7f_A 214 LNR-GCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMD 259 (394)
T ss_dssp CCT-TCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEE
T ss_pred CCC-CccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeC
Confidence 000 000000 0 00135888999986667788777655 44433
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=89.71 E-value=8.9 Score=43.11 Aligned_cols=147 Identities=13% Similarity=0.112 Sum_probs=80.7
Q ss_pred CC-eEEEEECC------CcEEEEECCCCeeeeeec--CCCCeEEEEEeeCCCCEEEEEEcCC--cEEEEeCCCCcEEEEe
Q 005352 365 NN-YLLSASID------KTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSIDG--KVRIWAVLSCHVVDWV 433 (701)
Q Consensus 365 ~~-~l~s~s~d------g~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~~~~~l~sgs~dg--~v~iwd~~~~~~~~~~ 433 (701)
++ .++.|+.+ ..+.+||..+.+-...-. ....-.+++... ++.+++.|+.++ .+.+||+.+.+-....
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~-~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~ 529 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLP-DGNVLILGGVTEGPAMLLYNVTEEIFKDVT 529 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECT-TSCEEEECCBCSSCSEEEEETTTTEEEECC
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEc-CCEEEEECCCCCCCCEEEEECCCCceEEcc
Confidence 45 55566543 357889988865443322 222222233323 678888888655 6999999887644332
Q ss_pred c------CCCcEEEEEEeeC-CCeEEEEec--C-----CcEEEEECCCCee------eeeeeEEeecccCCCCCCeeEEE
Q 005352 434 D------IRQIVTAVCYRPD-GQGGIVGSM--M-----GDCRFYNVSDNHL------ELDAEICVHSKKKAPCKRITGFQ 493 (701)
Q Consensus 434 ~------~~~~i~~i~~sp~-g~~l~~gs~--d-----g~v~i~d~~~~~~------~~~~~~~~~~~~~~~~~~i~~l~ 493 (701)
. ......++.+..+ ++.++.|+. + ..+..||+.++.. ..... ...........+.
T Consensus 530 ~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~-----~p~~~R~~~~~~~ 604 (695)
T 2zwa_A 530 PKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQ-----HPLFQRYGSQIKY 604 (695)
T ss_dssp CSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEE-----CGGGCCBSCEEEE
T ss_pred CCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCC-----CCCCCcccceEEE
Confidence 1 1222334555555 667777765 2 4588999988772 11111 0001111122222
Q ss_pred EecCCCCEEEEEEC--------CCcEEEEeCCcc
Q 005352 494 FLPQDSSKVMVSCA--------DSQVRILQGPNV 519 (701)
Q Consensus 494 ~~p~~~~~l~~~s~--------dg~I~iwd~~~~ 519 (701)
+ . ++.+++.|+. ...|.+||..+.
T Consensus 605 ~-~-~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~ 636 (695)
T 2zwa_A 605 I-T-PRKLLIVGGTSPSGLFDRTNSIISLDPLSE 636 (695)
T ss_dssp E-E-TTEEEEECCBCSSCCCCTTTSEEEEETTTT
T ss_pred e-C-CCEEEEECCccCCCCCCCCCeEEEEECCCC
Confidence 2 2 2677777774 346889998743
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=88.91 E-value=35 Score=38.52 Aligned_cols=183 Identities=7% Similarity=0.058 Sum_probs=106.6
Q ss_pred CeEEEEEecCCeEEEEECCCcEEEEECCCCeeeeeec-----CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEE
Q 005352 356 EILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP-----HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV 430 (701)
Q Consensus 356 ~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~-----h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~ 430 (701)
.|.++.. .++.|..++.+ -|..+|..+++...... ....|.++.... ++.+.+ |+.+ -|..++..+++..
T Consensus 104 ~i~~i~~-~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~lWi-gt~~-Gl~~~~~~~~~~~ 178 (758)
T 3ott_A 104 DVRTMAL-QGDTLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTK-DNQIYV-GTYN-GLCRYIPSNGKFE 178 (758)
T ss_dssp CEEEEEE-ETTEEEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECT-TCCEEE-EETT-EEEEEETTTTEEE
T ss_pred eEEEEEe-cCCcEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcC-CCCEEE-EeCC-CHhhCccCCCceE
Confidence 4566544 45666666666 58888987765433211 245688888765 555544 5544 5788888776654
Q ss_pred EEecC------CCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEE
Q 005352 431 DWVDI------RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMV 504 (701)
Q Consensus 431 ~~~~~------~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~ 504 (701)
..... ...|.++...+++..|.+|+. +-+..|+..+.+......+ . ...|.++...+ ...|.+
T Consensus 179 ~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l--~------~~~i~~i~~d~--~g~lWi 247 (758)
T 3ott_A 179 GIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAF--H------NNSIKSLALDG--NGDLLA 247 (758)
T ss_dssp EECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEE--E------EEEEEEEEECT--TCCEEE
T ss_pred EecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCC--C------CCeEEEEEEcC--CCCEEE
Confidence 32211 124888888877777777775 4588899877654321111 1 13466666554 345555
Q ss_pred EECCCcEEEEeCCccce-eeecc------cCCCCeEEEEEecCCCEEEEEeCCCcEEEEe
Q 005352 505 SCADSQVRILQGPNVIG-KYKGL------RRSGNQLSACFTSDGKHIVSAGEDSNVYMWN 557 (701)
Q Consensus 505 ~s~dg~I~iwd~~~~~~-~~~~~------~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd 557 (701)
|+. +-+.+++..+... .+... -....|.++....+|.+.+ |+..| +.++.
T Consensus 248 gT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi-GT~~G-l~~~~ 304 (758)
T 3ott_A 248 GTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIWL-GTDYG-ISLSR 304 (758)
T ss_dssp EET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEEE-EESSS-EEEEC
T ss_pred EeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEE-EeCCc-ccccc
Confidence 664 4678888754321 12110 1234688888888887554 44456 55543
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=88.91 E-value=6.6 Score=44.19 Aligned_cols=191 Identities=12% Similarity=0.133 Sum_probs=99.0
Q ss_pred eEEEEECC----CcEEEEECCCCeeeeee-c-------CC-CCeEEEEEeeCCCCEEEEEEcC------CcEEEEeCCCC
Q 005352 367 YLLSASID----KTVRLWRVGNDHCLRVF-P-------HS-NYVTCVHFNPVDDNYFISGSID------GKVRIWAVLSC 427 (701)
Q Consensus 367 ~l~s~s~d----g~I~iWd~~~~~~~~~~-~-------h~-~~V~~l~f~p~~~~~l~sgs~d------g~v~iwd~~~~ 427 (701)
.++.|+.+ ..+.+||..+++....- . .. .....+.+.. ++.+++.|+.+ ..+.+||+.+.
T Consensus 400 iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~-~~~lyv~GG~~~~~~~~~dv~~yd~~t~ 478 (695)
T 2zwa_A 400 VFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR-NNQLLLIGGRKAPHQGLSDNWIFDMKTR 478 (695)
T ss_dssp EEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT-TTEEEEECCBSSTTCBCCCCEEEETTTT
T ss_pred EEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc-CCEEEEEcCCCCCCCccccEEEEeCCCC
Confidence 56666643 46888998877544333 1 11 1122333321 45677777654 34788999886
Q ss_pred cEEEEecCCC--cEEEEEEeeCCCeEEEEecCC--cEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEE
Q 005352 428 HVVDWVDIRQ--IVTAVCYRPDGQGGIVGSMMG--DCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVM 503 (701)
Q Consensus 428 ~~~~~~~~~~--~i~~i~~sp~g~~l~~gs~dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~ 503 (701)
+-........ .-.+++...+++.++.|+.++ .+.+||+.++....... .............+.+....+.+++
T Consensus 479 ~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~---~g~~p~~r~~~~a~v~~~~~~~iyv 555 (695)
T 2zwa_A 479 EWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTP---KDEFFQNSLVSAGLEFDPVSKQGII 555 (695)
T ss_dssp EEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCC---SSGGGGSCCBSCEEEEETTTTEEEE
T ss_pred cEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccC---CCCCCCcccceeEEEEeCCCCEEEE
Confidence 5443322211 112233324788888887655 69999999887543211 0001111122233555543366777
Q ss_pred EEEC--C-----CcEEEEeCCccc-------eeeec--ccCCCCeEEEEEecCCCEEEEEeCC--------CcEEEEeCC
Q 005352 504 VSCA--D-----SQVRILQGPNVI-------GKYKG--LRRSGNQLSACFTSDGKHIVSAGED--------SNVYMWNCI 559 (701)
Q Consensus 504 ~~s~--d-----g~I~iwd~~~~~-------~~~~~--~~~~~~v~~l~~s~dg~~l~sgs~D--------g~I~iWd~~ 559 (701)
.|+. + +.+.+||..+.. ..... ....... +++...++++++.|+.+ ..|.+||+.
T Consensus 556 ~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~ 634 (695)
T 2zwa_A 556 LGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGS-QIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPL 634 (695)
T ss_dssp ECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSC-EEEEEETTEEEEECCBCSSCCCCTTTSEEEEETT
T ss_pred ECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccc-eEEEeCCCEEEEECCccCCCCCCCCCeEEEEECC
Confidence 7776 2 458888876543 11111 0111111 22333336667777642 347777766
Q ss_pred CCC
Q 005352 560 GHE 562 (701)
Q Consensus 560 ~~~ 562 (701)
+..
T Consensus 635 t~~ 637 (695)
T 2zwa_A 635 SET 637 (695)
T ss_dssp TTE
T ss_pred CCe
Confidence 543
|
| >2rr3_B OSBP, oxysterol-binding protein 1; lipid transport, transport, protein-peptide complex, major S protein domain, protein binding; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=86.19 E-value=0.46 Score=30.72 Aligned_cols=20 Identities=50% Similarity=0.619 Sum_probs=16.3
Q ss_pred CCCCCcccccccccccccCC
Q 005352 4 SSEDEECPFFDASEDIASIS 23 (701)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~ 23 (701)
|+|+||-.||||.+-|....
T Consensus 13 SdEDed~EfFDA~efITv~~ 32 (47)
T 2rr3_B 13 SDEDDENEFFDAPEIITMPE 32 (47)
T ss_dssp CCCCCSSCCBCCCSSCSSCS
T ss_pred cccccccccccccceeEccC
Confidence 67888899999999777654
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=86.11 E-value=14 Score=37.17 Aligned_cols=89 Identities=13% Similarity=0.169 Sum_probs=46.8
Q ss_pred CC-eEEEEEC-CCcEEEEECCC--Ceeee--eec-CCCCeEEEEEeeCCCCEEEEEEc-C---------CcEEEEeCCCC
Q 005352 365 NN-YLLSASI-DKTVRLWRVGN--DHCLR--VFP-HSNYVTCVHFNPVDDNYFISGSI-D---------GKVRIWAVLSC 427 (701)
Q Consensus 365 ~~-~l~s~s~-dg~I~iWd~~~--~~~~~--~~~-h~~~V~~l~f~p~~~~~l~sgs~-d---------g~v~iwd~~~~ 427 (701)
++ .++.|+. ...+.++|+.+ .+... .+. ....-.+++.. ++.+++.|+. + ..+.+||+.+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 45 4455543 45688899864 32222 222 11111222222 6677777765 2 46889999887
Q ss_pred cEEEEecCC----CcEEEEEEeeCCCeEEEEecC
Q 005352 428 HVVDWVDIR----QIVTAVCYRPDGQGGIVGSMM 457 (701)
Q Consensus 428 ~~~~~~~~~----~~i~~i~~sp~g~~l~~gs~d 457 (701)
+-....... ....++. .+++.++.|+.+
T Consensus 97 ~W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~ 128 (357)
T 2uvk_A 97 SWVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVN 128 (357)
T ss_dssp EEEECSCCCSSCCSSEEEEE--ETTEEEEEECCC
T ss_pred cEEECCCCCCcccccceEEE--ECCEEEEEeCcC
Confidence 644332221 1122222 577788888754
|
| >3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=84.42 E-value=35 Score=34.05 Aligned_cols=148 Identities=11% Similarity=0.089 Sum_probs=88.6
Q ss_pred eEEEEECCCcEEEEECCCCe-------eeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCC--CCcE-------E
Q 005352 367 YLLSASIDKTVRLWRVGNDH-------CLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVL--SCHV-------V 430 (701)
Q Consensus 367 ~l~s~s~dg~I~iWd~~~~~-------~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~--~~~~-------~ 430 (701)
+++..+.+|.|+--.+.... ....+...+.+..+.... ....++..+..|.+..+... .-.. +
T Consensus 111 ~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~-~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv 189 (327)
T 3uc1_A 111 YLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCS-AGDDLLLVSANGQSIRFSATDEALRPMGRATSGV 189 (327)
T ss_dssp EEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEEC-TTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCE
T ss_pred EEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEec-CCCEEEEEECCCeEEEEECcccccCcCCcCCCCe
Confidence 99999999999998765422 222233456666666655 56678888889998888766 2111 1
Q ss_pred E--EecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeee--eeEEeecccCCCCCCeeEEEEecCCCCEEEEEE
Q 005352 431 D--WVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELD--AEICVHSKKKAPCKRITGFQFLPQDSSKVMVSC 506 (701)
Q Consensus 431 ~--~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~--~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s 506 (701)
. .+.....|.++...+++..+++.+..|.++.-.+..-..... .-..... .......+..+.... +...++..+
T Consensus 190 ~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~-l~~~~d~lv~~~~~~-~~~~i~l~T 267 (327)
T 3uc1_A 190 QGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVM-YDRRRGRLVGALIVD-DDSELYAVT 267 (327)
T ss_dssp ESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSC-CCTTTCSEEEEEEEC-TTCEEEEEE
T ss_pred eeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEE-ecCCCCeEEEEEEeC-CCccEEEEc
Confidence 1 122345677776666777899999999998887654322110 0011111 111123355544444 455677777
Q ss_pred CCCcEEEEeCC
Q 005352 507 ADSQVRILQGP 517 (701)
Q Consensus 507 ~dg~I~iwd~~ 517 (701)
.+|.+.-++..
T Consensus 268 ~~G~~ir~~~~ 278 (327)
T 3uc1_A 268 SGGGVIRTAAR 278 (327)
T ss_dssp GGGCEEEEEGG
T ss_pred CCCeEEEEehh
Confidence 77777777654
|
| >3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=83.70 E-value=33 Score=33.25 Aligned_cols=204 Identities=8% Similarity=0.036 Sum_probs=114.3
Q ss_pred cCeEEEEEecCC-eEEEEECCCcEEE---EECCCCeeeeeecCCCCeEEEEEeeC-CCCEEEEEEcCCcEEEEeCCCCc-
Q 005352 355 GEILDLSWSKNN-YLLSASIDKTVRL---WRVGNDHCLRVFPHSNYVTCVHFNPV-DDNYFISGSIDGKVRIWAVLSCH- 428 (701)
Q Consensus 355 ~~I~~l~~s~~~-~l~s~s~dg~I~i---Wd~~~~~~~~~~~h~~~V~~l~f~p~-~~~~l~sgs~dg~v~iwd~~~~~- 428 (701)
+.+..+.-.... +|+.-+..|.++- |++........+.....|..+.. +. ++.+++..+.+|.++...+..-.
T Consensus 24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~~ 102 (276)
T 3no0_A 24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLKSREEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFEY 102 (276)
T ss_dssp CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCCSSTTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTTT
T ss_pred CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccccCCCCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhhh
Confidence 345444443333 6666677776654 33322211111444566766644 31 46789999999999998764421
Q ss_pred -----EEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEE
Q 005352 429 -----VVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVM 503 (701)
Q Consensus 429 -----~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~ 503 (701)
....+...+.+..+........++..+..|.+..+....-...-....-...........|..+...+ +...++
T Consensus 103 ~~~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~-~~~~ll 181 (276)
T 3no0_A 103 KAQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKNDETSGLRIWN-GEPYLL 181 (276)
T ss_dssp CSTTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEES-SCSEEE
T ss_pred hcCCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCCCEEEEEEEeC-CCCEEE
Confidence 11112233456666666566789999999998888764321100000000011112235566666555 466888
Q ss_pred EEECCCcEEEEeCCccceeee------cccCCCCeEEEEEecCCCEEEEEeCCCcEEE--EeCCC
Q 005352 504 VSCADSQVRILQGPNVIGKYK------GLRRSGNQLSACFTSDGKHIVSAGEDSNVYM--WNCIG 560 (701)
Q Consensus 504 ~~s~dg~I~iwd~~~~~~~~~------~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~i--Wd~~~ 560 (701)
..+..|.++...+......-. .....+.+..+........++..+.+|.+.. ++...
T Consensus 182 ~~T~~G~~kr~~~~e~~~~~R~gkGv~~i~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 182 VITAKGRVKKISHEEIPKTNRGVKGTEVSGTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp EEETTSCEEEEEGGGSCCCCTTCCCEECCCSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGGG
T ss_pred EEeCCCcEEEeEHHHcccCCCCCcceEEEcCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHHH
Confidence 999999999887643221111 1123345555544444456777788888888 87654
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=82.39 E-value=40 Score=33.17 Aligned_cols=161 Identities=9% Similarity=-0.039 Sum_probs=88.0
Q ss_pred CcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEE----cCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCe
Q 005352 375 KTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGS----IDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQG 450 (701)
Q Consensus 375 g~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs----~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~ 450 (701)
..|+..++...+....... . +..|++ +++.|+-.. .+..|..-++.......+..+.. ..++|+++.
T Consensus 88 ~~Iy~i~~dg~~~~~l~~~--~--~~~~s~-~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~----~~~~~~g~~ 158 (302)
T 3s25_A 88 NSLCRIKRNGHGSTVLDPD--P--CIYASL-IGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL----FTCNTSDRY 158 (302)
T ss_dssp EEEEEEETTSCCCEEEECS--C--EEEEEE-ETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC----CCSEEETTE
T ss_pred CeEEEEeCCCCcceEeecC--C--ccEEEE-eCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc----eEeeEECCE
Confidence 4577777776654333222 2 236777 777777665 23456666776554444444432 456888888
Q ss_pred EEEEec-CCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECC--CcEEEEeCCccceeeeccc
Q 005352 451 GIVGSM-MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD--SQVRILQGPNVIGKYKGLR 527 (701)
Q Consensus 451 l~~gs~-dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~d--g~I~iwd~~~~~~~~~~~~ 527 (701)
|+-.+. ...|...++........ .. ... ...+.| ++..|+-.... ..|..-++.......-
T Consensus 159 iy~t~~g~~~Iy~~~l~g~~~~~l-----~~------~~~-~~~~~P-~g~~iy~t~~~~~~~I~~~~ldG~~~~~L--- 222 (302)
T 3s25_A 159 FYYNNPKNGQLYRYDTASQSEALF-----YD------CNC-YKPVVL-DDTNVYYMDVNRDNAIVHVNINNPNPVVL--- 222 (302)
T ss_dssp EEEECTTTCCEEEEETTTTEEEEE-----EC------SCE-EEEEEE-ETTEEEEEEGGGTTEEEEECSSSCCCEEC---
T ss_pred EEEEeCCCceEEEEECCCCCEEEE-----eC------CCc-cceeee-cCCEEEEEEcCCCcEEEEEECCCCCeEEE---
Confidence 886665 67788888877653321 11 111 123557 45555554433 3565655543222111
Q ss_pred CCCCeEEEEEecCCCEEEEEeC--CCcEEEEeCCCCC
Q 005352 528 RSGNQLSACFTSDGKHIVSAGE--DSNVYMWNCIGHE 562 (701)
Q Consensus 528 ~~~~v~~l~~s~dg~~l~sgs~--Dg~I~iWd~~~~~ 562 (701)
....+ ..|+|++++|+-++. .+.|..-+++...
T Consensus 223 t~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~ 257 (302)
T 3s25_A 223 TEANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGTG 257 (302)
T ss_dssp SCSCE--EEEEEETTEEEEEECSSSCEEEEEETTSCC
T ss_pred eCCCc--ceEEECCCEEEEEECCCCcEEEEEECCCCc
Confidence 12233 348889998886632 3566666666543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 701 | ||||
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-23 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-14 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 7e-12 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 5e-07 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 3e-23 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 1e-11 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 5e-07 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 5e-20 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 7e-18 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-15 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 3e-13 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 2e-16 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 3e-12 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 0.003 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-14 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 2e-14 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 6e-11 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 2e-10 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 2e-08 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-06 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 6e-14 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 9e-10 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 2e-05 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 5e-05 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 0.004 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 2e-13 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 2e-11 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 7e-08 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 3e-13 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 5e-12 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 9e-08 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 3e-04 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 6e-04 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 1e-12 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 1e-08 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 6e-07 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 1e-04 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 2e-12 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 3e-07 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 0.001 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 2e-11 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 3e-08 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 4e-06 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 2e-11 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 5e-11 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 2e-04 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 5e-04 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 0.002 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 0.002 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 5e-11 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 5e-05 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 8e-05 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 3e-04 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 6e-09 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 2e-08 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 5e-08 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 6e-06 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-08 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 5e-07 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-05 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 2e-08 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 9e-08 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 1e-06 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 2e-06 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 6e-08 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 9e-06 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 7e-04 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 7e-07 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 1e-04 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 2e-04 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 7e-06 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 9e-06 | |
| d1ri6a_ | 333 | b.69.11.1 (A:) Putative isomerase YbhE {Escherichi | 2e-04 | |
| d1ri6a_ | 333 | b.69.11.1 (A:) Putative isomerase YbhE {Escherichi | 8e-04 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 3e-04 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 0.002 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 0.002 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 3e-04 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 0.004 |
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 99.8 bits (247), Expect = 2e-23
Identities = 46/328 (14%), Positives = 91/328 (27%), Gaps = 37/328 (11%)
Query: 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVN 303
+ H + + F P + SA +D +++W + + I F +
Sbjct: 11 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHS 70
Query: 304 HLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS 363
F+ E
Sbjct: 71 GKLLASCSADMT-------------------IKLWDFQGFECIRTMHGHDHNVSSVSIMP 111
Query: 364 KNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWA 423
++++SAS DKT+++W V +C++ F + D S S D VR+W
Sbjct: 112 NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWV 171
Query: 424 VLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLE----LDAEICV 478
V + + + R +V + + P+ + G + D I +
Sbjct: 172 VATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKM 231
Query: 479 HSKKKAPCKR--------ITGFQFLPQDSSKVMVSCADSQVRI--LQGPNVIGKYKGLRR 528
C + G F ++ D +R+ + +
Sbjct: 232 WDVSTGMCLMTLVGHDNWVRGVLFHS-GGKFILSCADDKTLRVWDYKNKRCMKTLNA--H 288
Query: 529 SGNQLSACFTSDGKHIVSAGEDSNVYMW 556
S F ++V+ D V +W
Sbjct: 289 EHFVTSLDFHKTAPYVVTGSVDQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 72.5 bits (176), Expect = 2e-14
Identities = 36/268 (13%), Positives = 81/268 (30%), Gaps = 55/268 (20%)
Query: 345 KPLHEFHGHSGEILDLSWSKN-NYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHF 402
+ GH + + + + ++SAS D T+++W R H++ V + F
Sbjct: 8 PEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISF 67
Query: 403 NPV-----------------------------------------DDNYFISGSIDGKVRI 421
+ + ++ +S S D +++
Sbjct: 68 DHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKM 127
Query: 422 WAVLSCHVVD-WVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELD------- 473
W V + + V + R+ V V DG S R + V+ + +
Sbjct: 128 WEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHV 187
Query: 474 ----AEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRS 529
+ S + + + ++ D +++ + +
Sbjct: 188 VECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHD 247
Query: 530 GNQLSACFTSDGKHIVSAGEDSNVYMWN 557
F S GK I+S +D + +W+
Sbjct: 248 NWVRGVLFHSGGKFILSCADDKTLRVWD 275
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 64.8 bits (156), Expect = 7e-12
Identities = 38/314 (12%), Positives = 85/314 (27%), Gaps = 31/314 (9%)
Query: 393 HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDI-RQIVTAVCYRPDGQGG 451
H + VT V F+P + +S S D +++W + + V + +
Sbjct: 16 HRSPVTRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH----- 69
Query: 452 IVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQV 511
+ D + + + + ++ + D +
Sbjct: 70 ----SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTI 125
Query: 512 RILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEE----PAHD 567
++ + DG I S D V +W E H
Sbjct: 126 KMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHR 185
Query: 568 QAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYV 627
S ++ +SI+ + + P L D + L
Sbjct: 186 HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVG 245
Query: 628 FESFPKGCATWPEEKLPALSQLSSASALHKSQ-YKFLKSSCLCTTSSH-------AW--- 676
+++ +G K + S + + + + C+ T ++H +
Sbjct: 246 HDNWVRGVLFHSGGKF-----ILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKT 300
Query: 677 GLVIVTAGWDGRIR 690
+VT D ++
Sbjct: 301 APYVVTGSVDQTVK 314
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 50.1 bits (118), Expect = 5e-07
Identities = 10/60 (16%), Positives = 27/60 (45%), Gaps = 7/60 (11%)
Query: 219 CSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQ 278
C+ + ++V+ K + + + AH+ + ++ F Y+ + D V++W+
Sbjct: 265 CADDKTLRVWDYKNKRCM-------KTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 99.4 bits (246), Expect = 3e-23
Identities = 51/317 (16%), Positives = 99/317 (31%), Gaps = 28/317 (8%)
Query: 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVN 303
+ ++ H I M + D + L SA DG + +W ++ + + + +
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 304 HLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS 363
+ C ++ K + E GH+G + +
Sbjct: 109 GNYVACGGLDNI----------------CSIYNLKTREGNVRVSRELAGHTGYLSCCRFL 152
Query: 364 KNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWA 423
+N ++++S D T LW + F D F+SG+ D ++W
Sbjct: 153 DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD 212
Query: 424 VLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKK 482
V + + A+C+ P+G GS CR +++ + +
Sbjct: 213 VREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ------ELMTYSH 266
Query: 483 KAPCKRITGFQFLPQDSSKVMVSCADSQVRI--LQGPNVIGKYKGLRRSGNQLSACFTSD 540
IT F ++ D + + G G T D
Sbjct: 267 DNIICGITSVSFSK-SGRLLLAGYDDFNCNVWDALKADRAGVLAG--HDNRVSCLGVTDD 323
Query: 541 GKHIVSAGEDSNVYMWN 557
G + + DS + +WN
Sbjct: 324 GMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 64.4 bits (155), Expect = 1e-11
Identities = 38/267 (14%), Positives = 82/267 (30%), Gaps = 19/267 (7%)
Query: 307 ELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN- 365
+LK D K +L + + + V RI + GH +I + W +
Sbjct: 13 QLKNQIRDARKACADATLSQITNNI-----DPVGRIQMRTRRTLRGHLAKIYAMHWGTDS 67
Query: 366 NYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAV 424
L+SAS D + +W + + P S++V + P + G +
Sbjct: 68 RLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGL-------DNI 120
Query: 425 LSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKA 484
S + + + V+ G + + + D L
Sbjct: 121 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTF 180
Query: 485 PCKRITGFQFLPQDSSKVMVS-CADSQVRI--LQGPNVIGKYKGLRRSGNQLSACFTSDG 541
+++ VS D+ ++ ++ + G N + CF +G
Sbjct: 181 TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDIN--AICFFPNG 238
Query: 542 KHIVSAGEDSNVYMWNCIGHEEPAHDQ 568
+ +D+ +++ +E
Sbjct: 239 NAFATGSDDATCRLFDLRADQELMTYS 265
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 50.1 bits (118), Expect = 5e-07
Identities = 9/59 (15%), Positives = 20/59 (33%), Gaps = 7/59 (11%)
Query: 219 CSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLW 277
V+ K + + HD + + + DG +A+ D +++W
Sbjct: 288 GYDDFNCNVWDALKADRA-------GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 90.6 bits (223), Expect = 5e-20
Identities = 56/326 (17%), Positives = 115/326 (35%), Gaps = 19/326 (5%)
Query: 249 HDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSEL 308
H + +KFS DG+YLA+ G + ++++V + + + S
Sbjct: 61 HTSVVCCVKFSNDGEYLAT-GCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPS 119
Query: 309 KPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYL 368
L++ S + + + + + + + L
Sbjct: 120 SDLYIRSVCFSP-DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKL 178
Query: 369 LSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH 428
+S S D+TVR+W + C + VT V +P D Y +GS+D VR+W +
Sbjct: 179 VSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF 238
Query: 429 VVDWVDI--------RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHS 480
+V+ +D + V +V + DGQ + GS+ + +N+ + + + D++
Sbjct: 239 LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSG 298
Query: 481 KKKAPCKRITGFQF---LPQDSSKVMVSCADSQVRI--LQGPNVIGKYKGLRRSGNQL-- 533
+ F Q+ ++ D V + N + +G R S +
Sbjct: 299 TCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAV 358
Query: 534 --SACFTSDGKHIVSAGEDSNVYMWN 557
+ + + D +W
Sbjct: 359 ANGSSLGPEYNVFATGSGDCKARIWK 384
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 84.1 bits (206), Expect = 7e-18
Identities = 50/293 (17%), Positives = 100/293 (34%), Gaps = 35/293 (11%)
Query: 302 VNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLS 361
NH + P +D + S+ +L++ + +++ P + R ++ LH+ H+ + +
Sbjct: 10 ANHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVK 69
Query: 362 WSKNNYLLSASIDKTVRLWRVGNDHCLRVFP-------------------HSNYVTCVHF 402
+S + L+ +KT +++RV + + Y+ V F
Sbjct: 70 FSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCF 129
Query: 403 NPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRF 462
+P D + +G+ D +RIW + + +V + + +V
Sbjct: 130 SP-DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVR 188
Query: 463 YNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRI-------LQ 515
D S + +T P D + D VR+ L
Sbjct: 189 IW--------DLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLV 240
Query: 516 GPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQ 568
G + S FT DG+ +VS D +V +WN + +
Sbjct: 241 ERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSK 293
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 76.4 bits (186), Expect = 2e-15
Identities = 40/211 (18%), Positives = 68/211 (32%), Gaps = 57/211 (27%)
Query: 219 CSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQ 278
S + V+V+ + + + H S+ ++ F+ DGQ + S D V+LW
Sbjct: 223 GSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWN 282
Query: 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPK 338
+ ++ P
Sbjct: 283 LQNANNKSDSKTPNSG-------------------------------------------- 298
Query: 339 VFRILEKPLHEFHGHSGEILDLSWSKN-NYLLSASIDKTVRLWRVGNDHCLRVFP-HSNY 396
+ GH +L ++ ++N Y+LS S D+ V W + + L + H N
Sbjct: 299 ------TCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNS 352
Query: 397 VTCVHFNPV-----DDNYFISGSIDGKVRIW 422
V V + N F +GS D K RIW
Sbjct: 353 VISVAVANGSSLGPEYNVFATGSGDCKARIW 383
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 69.4 bits (168), Expect = 3e-13
Identities = 48/298 (16%), Positives = 95/298 (31%), Gaps = 53/298 (17%)
Query: 219 CSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQ 278
S V + + + D I ++ FSPDG++LA+ +D ++R+W
Sbjct: 90 VSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWD 149
Query: 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISIL-------KSLRRTSESA 331
+ + + + E D + + + + +I L +
Sbjct: 150 IENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTT 209
Query: 332 CVVFPP----------------------KVFRILEKPLHEFHGHSGEILDLSWSKN-NYL 368
V P + L+ GH + + ++++ +
Sbjct: 210 VAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSV 269
Query: 369 LSASIDKTVRLWRVGNDHCLRVF-------------PHSNYVTCVHFNPVDDNYFISGSI 415
+S S+D++V+LW + N + H ++V V +D Y +SGS
Sbjct: 270 VSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSGSK 328
Query: 416 DGKVRIW--------AVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNV 465
D V W +L H + V + P+ GS R +
Sbjct: 329 DRGVLFWDKKSGNPLLMLQGH-RNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 79.1 bits (193), Expect = 2e-16
Identities = 44/340 (12%), Positives = 104/340 (30%), Gaps = 38/340 (11%)
Query: 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVD-------------- 289
+ ++ HD ++T G + S DD +++W V + L +
Sbjct: 10 KVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN 68
Query: 290 ---IPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKP 346
D + + + L+ + + + S +V+ I
Sbjct: 69 IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQ 128
Query: 347 LHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVD 406
+ ++S + D V++W + CL V+ D
Sbjct: 129 CLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTN--RVYSLQFD 186
Query: 407 DNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVS 466
+ +SGS+D +R+W V + + + + Q +T + G+ + +++
Sbjct: 187 GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLT-SGMELKDNILVSGNADSTVKIWDIK 245
Query: 467 DNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRI--LQGPNVIGKYK 524
+ P K + L + + V+ S D V++ L+ I
Sbjct: 246 TG--------QCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLV 297
Query: 525 GLRRSGNQ---LSACFTSDGKHIVSAGED----SNVYMWN 557
L G+ ++ + + + + +
Sbjct: 298 TLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLD 337
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 66.4 bits (160), Expect = 3e-12
Identities = 32/217 (14%), Positives = 64/217 (29%), Gaps = 22/217 (10%)
Query: 345 KPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFN 403
K GH ++ N ++S S D T+++W CLR H+ V
Sbjct: 7 KSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR 66
Query: 404 PVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFY 463
I S V + + + + + R
Sbjct: 67 D---------------NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVV 111
Query: 464 NVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRI--LQGPNVIG 521
+ S + +I + + + D +V+ D V++ + +
Sbjct: 112 SGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLH 171
Query: 522 KYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNC 558
+G DG H+VS D+++ +W+
Sbjct: 172 TLQG----HTNRVYSLQFDGIHVVSGSLDTSIRVWDV 204
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.3 bits (87), Expect = 0.003
Identities = 9/65 (13%), Positives = 20/65 (30%), Gaps = 6/65 (9%)
Query: 217 MFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDG---- 272
+ S VK++ ++ E E G + ++ S A +G
Sbjct: 274 ITSSDDGTVKLWDL--KTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEET 331
Query: 273 VVRLW 277
+ +
Sbjct: 332 KLLVL 336
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 73.3 bits (178), Expect = 1e-14
Identities = 40/309 (12%), Positives = 91/309 (29%), Gaps = 24/309 (7%)
Query: 249 HDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSEL 308
H + + S +++ + G G V++W + + V +N + +
Sbjct: 50 HGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPV--------SQLDCLNRDNYI 100
Query: 309 KPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYL 368
+ + + +L E++ + +
Sbjct: 101 RSCKLLPDG----CTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVC 156
Query: 369 LSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH 428
S D + +W + N +R F D +G +D VR W +
Sbjct: 157 FSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGR 216
Query: 429 VVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKR 488
+ D + ++ Y P G+ VG + +V+ +
Sbjct: 217 QLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD---------KYQLHLHESC 267
Query: 489 ITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAG 548
+ +F + + D+ + + P + S + LS + D K+IV+
Sbjct: 268 VLSLKFAY-CGKWFVSTGKDNLLNAWRTPYGA-SIFQSKESSSVLSCDISVDDKYIVTGS 325
Query: 549 EDSNVYMWN 557
D ++
Sbjct: 326 GDKKATVYE 334
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 72.5 bits (176), Expect = 2e-14
Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Query: 348 HEFHGHSGEILDLSWSKN-NYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVD 406
++ H H +L L ++ + +S D + WR + S+ V + D
Sbjct: 259 YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISV-D 317
Query: 407 DNYFISGSIDGKVRIWAVL 425
D Y ++GS D K ++ V+
Sbjct: 318 DKYIVTGSGDKKATVYEVI 336
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.1 bits (149), Expect = 6e-11
Identities = 34/245 (13%), Positives = 71/245 (28%), Gaps = 25/245 (10%)
Query: 245 EIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNH 304
+ D I + K PDG L G+ + +W + + ++ P+C ++
Sbjct: 92 DCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP 151
Query: 305 LSELKPLFMDKEKISILKSLRRTSESACVVFP-----------------------PKVFR 341
S++ I++ +T + +
Sbjct: 152 DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWD 211
Query: 342 ILEKPLHEFHGHSGEILDLSWSK-NNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCV 400
+ E + H + +I L + +L V + V ++ H + V +
Sbjct: 212 LREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSL 271
Query: 401 HFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDC 460
F +F+S D + W + V + D + + GS
Sbjct: 272 KFAY-CGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKA 330
Query: 461 RFYNV 465
Y V
Sbjct: 331 TVYEV 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.6 bits (145), Expect = 2e-10
Identities = 41/270 (15%), Positives = 65/270 (24%), Gaps = 45/270 (16%)
Query: 333 VVFPPKVFRILEKPLHEFH----GHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHC- 387
V FPP P H H + ++ S + V++W + +
Sbjct: 26 VPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNK 85
Query: 388 -----LRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAV 442
L NY+ P D I G + IW + + ++ A
Sbjct: 86 SPVSQLDCLNRDNYIRSCKLLP-DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPAC 144
Query: 443 CYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSS-- 500
V V D H + A C I+
Sbjct: 145 YALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLD 204
Query: 501 --------------------------------KVMVSCADSQVRILQGPNVIGKYKGLRR 528
+ + +S + N KY+
Sbjct: 205 NTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLH 264
Query: 529 SGNQLSACFTSDGKHIVSAGEDSNVYMWNC 558
LS F GK VS G+D+ + W
Sbjct: 265 ESCVLSLKFAYCGKWFVSTGKDNLLNAWRT 294
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.0 bits (128), Expect = 2e-08
Identities = 15/109 (13%), Positives = 34/109 (31%), Gaps = 8/109 (7%)
Query: 367 YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS 426
+ D + + + H V V + + +G G V++W +
Sbjct: 24 QPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISN-PTRHVYTGG-KGCVKVWDISH 81
Query: 427 CH------VVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNH 469
+D ++ + + PDG IVG ++++
Sbjct: 82 PGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT 130
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.7 bits (114), Expect = 1e-06
Identities = 7/33 (21%), Positives = 16/33 (48%)
Query: 248 AHDGSILTMKFSPDGQYLASAGDDGVVRLWQVV 280
S+L+ S D +Y+ + D +++V+
Sbjct: 304 KESSSVLSCDISVDDKYIVTGSGDKKATVYEVI 336
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 70.8 bits (171), Expect = 6e-14
Identities = 43/317 (13%), Positives = 88/317 (27%), Gaps = 29/317 (9%)
Query: 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDP-SCIYFTV 302
Q H+ +I + S DG+ L SA +G + W + + I T
Sbjct: 6 QVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTS 65
Query: 303 NHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSW 362
L S + P ++ + S + L L+
Sbjct: 66 KG------------------DLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAV 107
Query: 363 SKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIW 422
S + + A+ K + + L P S +CV + + G
Sbjct: 108 SADGDIAVAACYKH---IAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYK 164
Query: 423 AVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKK 482
+ + + + + + + H+
Sbjct: 165 LSGASVSEVKTIVHPAEITSVAFSNNG-----AFLVATDQSRKVIPYSVANNFELAHTNS 219
Query: 483 KAPCKRITGFQFLPQDSSKVMVSCADSQVRI--LQGPNVIGKYKGLRRSGNQLSACFTSD 540
D+ ++ D+ V + + P+ + + +++ +
Sbjct: 220 WTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLN 279
Query: 541 GKHIVSAGEDSNVYMWN 557
IVSAG+DSN+ WN
Sbjct: 280 ETTIVSAGQDSNIKFWN 296
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 58.1 bits (138), Expect = 9e-10
Identities = 19/104 (18%), Positives = 37/104 (35%), Gaps = 5/104 (4%)
Query: 347 LHEFHGHSGEILDLSWSKN-NYLLSASIDKTVRLWRVGNDHCLRVFP--HSNYVTCVHFN 403
+GH+ I LS S + L SA + + W + RVFP H+ +T +
Sbjct: 5 DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTT 64
Query: 404 PVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPD 447
D + +S +++ V + +++
Sbjct: 65 SKGDLFTVSWDDH--LKVVPAGGSGVDSSKAVANKLSSQPLGLA 106
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 45.0 bits (104), Expect = 2e-05
Identities = 11/66 (16%), Positives = 23/66 (34%), Gaps = 4/66 (6%)
Query: 362 WSKNNYLLSASIDKTVRLWRVGNDHCLRVF---PHSNYVTCVHFNPVDDNYFISGSIDGK 418
N L + S+D +V +W + + H+ ++ +S D
Sbjct: 233 SPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWL-NETTIVSAGQDSN 291
Query: 419 VRIWAV 424
++ W V
Sbjct: 292 IKFWNV 297
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 43.4 bits (100), Expect = 5e-05
Identities = 13/61 (21%), Positives = 21/61 (34%), Gaps = 5/61 (8%)
Query: 219 CSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQ 278
S V V++ K S + H S + + + SAG D ++ W
Sbjct: 242 GSLDNSVIVWNMNKPSDHPIIIKGA-----HAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296
Query: 279 V 279
V
Sbjct: 297 V 297
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 37.7 bits (85), Expect = 0.004
Identities = 6/36 (16%), Positives = 14/36 (38%)
Query: 347 LHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRV 382
+ + + + W ++SA D ++ W V
Sbjct: 262 IIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 70.3 bits (170), Expect = 2e-13
Identities = 41/379 (10%), Positives = 95/379 (25%), Gaps = 61/379 (16%)
Query: 247 QAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLS 306
+AHD I ++ + S DG +++W + D ++H+
Sbjct: 11 KAHDADIFSVSACNS--FTVSCSGDGYLKVWDNKLLDNENPKDK-SYSHFVHKSGLHHVD 67
Query: 307 ELKPLFMDKEKISILKSLRRTSESACVVF-------PPKVFRILEKPLHEFHGHSGEILD 359
L+ + D ++ ++ + TS S ++F K + L +
Sbjct: 68 VLQAIERDAFELCLVAT---TSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWA 124
Query: 360 LSWS------KNNYLLSASIDKTVRLWRV-------------------GNDHCLRVFPHS 394
L W ++ L++ + T +W+ S
Sbjct: 125 LKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPS 184
Query: 395 NYVTCVHFNPVDDNYFISGSIDGKVRI-------WAVLSCHVVDWVDIRQIVTAVCYRPD 447
+ T V + +G +G V+I ++ + +V + P
Sbjct: 185 QFATSVDISE--RGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQ 242
Query: 448 GQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKR--------ITGFQFLPQDS 499
G + + + + + F
Sbjct: 243 GSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE 302
Query: 500 SKVMVSCADSQVRI--LQGPNVIGKYKGLRR--SGNQLSACFTSDGKHIVSAGEDSNVYM 555
+ D ++R ++ I + G + G V
Sbjct: 303 TLCSAG-WDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFD-VKF 360
Query: 556 WNCIGHEEPAHDQAKTIRS 574
D +++
Sbjct: 361 LKKGWRSGMGADLNESLCC 379
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 64.1 bits (154), Expect = 2e-11
Identities = 26/255 (10%), Positives = 63/255 (24%), Gaps = 32/255 (12%)
Query: 352 GHSGEILDLSWSKNNYLLSASIDKTVRLWRV-------GNDHCLRVFPHS------NYVT 398
H +I +S N++ +S S D +++W D F H + +
Sbjct: 12 AHDADIFSVSAC-NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQ 70
Query: 399 CVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMG 458
+ + + + S G + + + D D + ++
Sbjct: 71 AIERDAFELCLVATTSFSGDLLFYRITR---EDETKKVIFEKLDLLDSDMKKHSFWALKW 127
Query: 459 DCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN 518
+ + L + K + F + + Q +
Sbjct: 128 GASNDRLLSHRL-----VATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMT 182
Query: 519 VIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERF 578
S S + G I + + V + + +++
Sbjct: 183 ---------PSQFATSVDISERGL-IATGFNNGTVQISELSTLRPLYNFESQHSMINNSN 232
Query: 579 TTNASIAIPWCGLKC 593
+ + P L
Sbjct: 233 SIRSVKFSPQGSLLA 247
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.9 bits (125), Expect = 7e-08
Identities = 31/295 (10%), Positives = 75/295 (25%), Gaps = 44/295 (14%)
Query: 219 CSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSIL-------TMKFSPDGQYLASAGDD 271
CS +KV+ K E + K H + + + + +A+
Sbjct: 30 CSGDGYLKVWDNKLLDNE-NPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFS 88
Query: 272 GVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKE-------------KI 318
G + +++ ++ +V ++D + LK +
Sbjct: 89 GDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTT 148
Query: 319 SILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVR 378
I K ES + L+ + S + S+ + + + TV+
Sbjct: 149 YIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQ 208
Query: 379 LWRVGNDHCLRVFPHSNYVTC------VHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDW 432
+ + L F + + + + +
Sbjct: 209 ISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGER 268
Query: 433 VDIRQI-----------------VTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHL 470
+ + V ++ + G+ G RF++V
Sbjct: 269 IGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKER 323
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 69.1 bits (167), Expect = 3e-13
Identities = 32/332 (9%), Positives = 80/332 (24%), Gaps = 22/332 (6%)
Query: 247 QAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLS 306
QA I +K P L DG + +++ + ++ + +
Sbjct: 8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN 67
Query: 307 ELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN 366
+++ + ILK S S + + + + +
Sbjct: 68 TDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVI 127
Query: 367 YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIW---- 422
+ N+ + + + I G + +V+ +
Sbjct: 128 DPRNYGDGVIAVKNLNSNNTK--------VKNKIFTMDTNSSRLIVGMNNSQVQWFRLPL 179
Query: 423 -AVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAE------ 475
+ + + QI + +G S+ G D + ++
Sbjct: 180 CEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFR 239
Query: 476 -ICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLS 534
++ K + +F P + + +D + K K +
Sbjct: 240 CHRLNLKDTNLAYPVNSIEFSP-RHKFLYTAGSDGIISCWNLQTR-KKIKNFAKFNEDSV 297
Query: 535 ACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAH 566
+ A D I +
Sbjct: 298 VKIACSDNILCLATSDDTFKTNAAIDQTIELN 329
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 65.6 bits (158), Expect = 5e-12
Identities = 26/222 (11%), Positives = 67/222 (30%), Gaps = 10/222 (4%)
Query: 345 KPLHEFHGHSGEILDLSWSKN-NYLLSASIDKTVRLWRV----GNDHCLRVFPHSNYVTC 399
+ + I D+ + + LL S D ++ +++ N L+ + + + C
Sbjct: 2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLC 61
Query: 400 VHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGD 459
+F D G++ G++ ++ + + +C + + D
Sbjct: 62 CNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWD 121
Query: 460 CRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV 519
+ + + + F S ++ +SQV+ + P
Sbjct: 122 GLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVG-MNNSQVQWFRLPLC 180
Query: 520 IGKYKGLRRSGNQ----LSACFTSDGKHIVSAGEDSNVYMWN 557
+ SG + A + + + D V +
Sbjct: 181 EDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEF 222
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.2 bits (123), Expect = 9e-08
Identities = 19/211 (9%), Positives = 48/211 (22%), Gaps = 3/211 (1%)
Query: 217 MFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRL 276
+ + + + + K + L ++ V+
Sbjct: 115 LIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQW 174
Query: 277 WQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFP 336
+++ E I E + +
Sbjct: 175 FRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSK 234
Query: 337 PKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSA-SIDKTVRLWRVGNDHCLRVFPHSN 395
FR + + + + + +S + L D + W + ++ F N
Sbjct: 235 RFAFRC-HRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN 293
Query: 396 YVTCVHFNPVDDNYFISGSIDGKVRIWAVLS 426
+ V DN + D + A +
Sbjct: 294 EDSVVKIAC-SDNILCLATSDDTFKTNAAID 323
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.4 bits (95), Expect = 3e-04
Identities = 30/315 (9%), Positives = 76/315 (24%), Gaps = 45/315 (14%)
Query: 219 CSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQ 278
S + VY ++K + L + +L F + G L
Sbjct: 29 TSWDGSLTVYKFDIQAKNVDLLQS----LRYKHPLLCCNFIDNTDLQIYVGTVQGEILKV 84
Query: 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPK 338
+ + I + + I +
Sbjct: 85 DLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEV-----------IDPRNYG 133
Query: 339 VFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRV----FPHS 394
I K L+ + + + ++ L+ + V+ +R+
Sbjct: 134 DGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLK 193
Query: 395 NYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS----------------CHVVDWVDIRQI 438
+ V P + + SIDG+V + + ++
Sbjct: 194 YQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYP 253
Query: 439 VTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQD 498
V ++ + P + G +N+ + + K +
Sbjct: 254 VNSIEFSPRHKFLYTAGSDGIISCWNLQTRK-------KIKNFAKFNEDSVVKIAC---S 303
Query: 499 SSKVMVSCADSQVRI 513
+ + ++ +D +
Sbjct: 304 DNILCLATSDDTFKT 318
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.2 bits (92), Expect = 6e-04
Identities = 15/130 (11%), Positives = 34/130 (26%), Gaps = 17/130 (13%)
Query: 361 SWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP----------------HSNYVTCVHFNP 404
+ +SID V + + + V + F+P
Sbjct: 202 LPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP 261
Query: 405 VDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYN 464
+ + DG + W + + + + V + + +
Sbjct: 262 -RHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTNA 320
Query: 465 VSDNHLELDA 474
D +EL+A
Sbjct: 321 AIDQTIELNA 330
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 67.6 bits (163), Expect = 1e-12
Identities = 24/318 (7%), Positives = 73/318 (22%), Gaps = 23/318 (7%)
Query: 248 AHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSE 307
I ++ D + G L + D R + + E + ++ +
Sbjct: 40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLG--IYDYRTGKAEKFEENLGNVFAMGVDRNG 97
Query: 308 LKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNY 367
+ + + L + + + + +
Sbjct: 98 KFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAY------GFPLKHG 151
Query: 368 LLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIW--AVL 425
+ + + ++ + +++ F+ D S VL
Sbjct: 152 ETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDA-DSKNLYYLSYRSLDPSPDRVVL 210
Query: 426 SCHVVDWVDIRQI------VTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVH 479
+ I P G + + S +++ +
Sbjct: 211 NFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMII 270
Query: 480 SKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTS 539
+ I + ++ + + + K N ++
Sbjct: 271 PLES--SILIYSVPVHGEFAAYYQGAPEKGVLLKYD----VKTRKVTEVKNNLTDLRLSA 324
Query: 540 DGKHIVSAGEDSNVYMWN 557
D K ++ +D +Y +
Sbjct: 325 DRKTVMVRKDDGKIYTFP 342
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 55.3 bits (131), Expect = 1e-08
Identities = 20/194 (10%), Positives = 45/194 (23%), Gaps = 13/194 (6%)
Query: 249 HDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSEL 308
+ F D + L + ++ S +
Sbjct: 177 ENSHDYAPAFDADSKNLYYLSYRSLDPSPDR------VVLNFSFEVVSKPFVIPLIPGSP 230
Query: 309 KPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-Y 367
P + ++ ++ P V + + + Y
Sbjct: 231 NPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAY 290
Query: 368 LLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS- 426
A + + V +V N +T + + D + DGK+ + +
Sbjct: 291 YQGAPEKGVLLKYDVKT---RKVTEVKNNLTDLRLSA-DRKTVMVRKDDGKIYTFPLEKP 346
Query: 427 -CHVVDWVDIRQIV 439
D R +V
Sbjct: 347 EDERTVETDKRPLV 360
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 49.9 bits (117), Expect = 6e-07
Identities = 8/49 (16%), Positives = 22/49 (44%)
Query: 242 KGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDI 290
K +++ ++ ++ S D + + DDG + + + + E V+
Sbjct: 306 KTRKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVET 354
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 42.5 bits (98), Expect = 1e-04
Identities = 34/340 (10%), Positives = 84/340 (24%), Gaps = 17/340 (5%)
Query: 359 DLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGK 418
D S + + S + V + L+V P + V FI G+ +G
Sbjct: 9 DFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKV-PEPLRIRYVRRGGDTKVAFIHGTREGD 66
Query: 419 -VRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEIC 477
+ I+ + + + V A+ +G+ +V + + ++ +
Sbjct: 67 FLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSR 126
Query: 478 VHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACF 537
+ F Q + + + + + F
Sbjct: 127 EAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAF 186
Query: 538 TSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAE 597
+D K++ S + + +K F P +
Sbjct: 187 DADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKP------FVIPLIPGSPNPTKLVPRSM 240
Query: 598 KEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLSSASALHK 657
+D + + + + + P + A
Sbjct: 241 TSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHG-EFAAYYQGAPEKGV 299
Query: 658 SQYKFLKSSCLCTTSSHAWGLV-------IVTAGWDGRIR 690
+K+ + ++ L ++ DG+I
Sbjct: 300 LLKYDVKTRKVTEVKNNLTDLRLSADRKTVMVRKDDGKIY 339
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 66.0 bits (159), Expect = 2e-12
Identities = 37/293 (12%), Positives = 86/293 (29%), Gaps = 30/293 (10%)
Query: 244 QEIQAHDGSILT-MKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTV 302
Q I + D Q + S D +++W E + C+ +
Sbjct: 6 QRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDE 65
Query: 303 NHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHG---------- 352
+ + + T C F
Sbjct: 66 RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASP 125
Query: 353 ----------HSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHF 402
+++ + Y++SAS D+T+++W +R +
Sbjct: 126 TDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKR--GIAC 183
Query: 403 NPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRF 462
D +SGS D +R+W + + ++ + + + + + G+ G +
Sbjct: 184 LQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKR-IVSGAYDGKIKV 242
Query: 463 YNVSD--NHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRI 513
+++ + +C+ + R+ QF D +++ S D + I
Sbjct: 243 WDLVAALDPRAPAGTLCLRT-LVEHSGRVFRLQF---DEFQIVSSSHDDTILI 291
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.2 bits (118), Expect = 3e-07
Identities = 24/125 (19%), Positives = 42/125 (33%), Gaps = 14/125 (11%)
Query: 256 MKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDK 315
+ + S D +RLW + L ++ E CI F + + + K
Sbjct: 182 ACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRI--VSGAYDGK 239
Query: 316 EKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDK 375
K+ L + A L HSG + L + ++S+S D
Sbjct: 240 IKVWDLVAALDPRAPAG-----------TLCLRTLVEHSGRVFRLQFD-EFQIVSSSHDD 287
Query: 376 TVRLW 380
T+ +W
Sbjct: 288 TILIW 292
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.4 bits (90), Expect = 0.001
Identities = 9/56 (16%), Positives = 23/56 (41%), Gaps = 4/56 (7%)
Query: 224 RVKVYHCK--KRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLW 277
++KV+ + + + + H G + ++F D + S+ D + +W
Sbjct: 239 KIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIW 292
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 63.8 bits (153), Expect = 2e-11
Identities = 35/321 (10%), Positives = 90/321 (28%), Gaps = 28/321 (8%)
Query: 246 IQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHL 305
++ H S++T + Y+ + DD ++R++ + + L ++ + + + +
Sbjct: 8 LRGHMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGI 66
Query: 306 SELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN 365
L S V + + + +
Sbjct: 67 ------------------LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNI 108
Query: 366 NYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISG------SIDGKV 419
Y+++ S D T+ +W++ + + + V P ++ YF+ S+
Sbjct: 109 KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS 168
Query: 420 RIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEI--- 476
++ D I V + G +D I
Sbjct: 169 GHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIW 228
Query: 477 CVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSAC 536
+ + + + S + A + I K N +
Sbjct: 229 DLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAIT 288
Query: 537 FTSDGKHIVSAGEDSNVYMWN 557
+I+ +G ++ ++N
Sbjct: 289 TFYVSDNILVSGSENQFNIYN 309
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 54.1 bits (128), Expect = 3e-08
Identities = 6/77 (7%), Positives = 27/77 (35%), Gaps = 4/77 (5%)
Query: 348 HEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVF--PHSNYVTCVHFNPV 405
+ H+ ++ ++ +L + + ++ + + + ++ + V+F
Sbjct: 276 KFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKG- 334
Query: 406 DDNYFISGSIDGKVRIW 422
+ DG+ +
Sbjct: 335 -KTLVAAVEKDGQSFLE 350
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.2 bits (110), Expect = 4e-06
Identities = 41/318 (12%), Positives = 95/318 (29%), Gaps = 19/318 (5%)
Query: 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVN 303
++ HDG + +K++ G L S D VR+W + + + C+
Sbjct: 47 LQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEY 105
Query: 304 HLSELKPLFMDKEKISIL-----KSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEIL 358
+ + + S+ E + GH +
Sbjct: 106 KNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASV- 164
Query: 359 DLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGK 418
N ++S S D T+ +W V CL + + IS S+D
Sbjct: 165 RTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTT 224
Query: 419 VRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICV 478
+RIW + + ++ + + + + +D +
Sbjct: 225 IRIWDLENGELMYTLQGHTALVGLLR-----------LSDKFLVSAAADGSIRGWDANDY 273
Query: 479 HSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFT 538
K ++ S ++VS +++Q I + + + + +Q+ +
Sbjct: 274 SRKFSYHHTNLSAITTFY-VSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNF 332
Query: 539 SDGKHIVSAGEDSNVYMW 556
+ + +D ++
Sbjct: 333 KGKTLVAAVEKDGQSFLE 350
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 63.7 bits (153), Expect = 2e-11
Identities = 20/124 (16%), Positives = 42/124 (33%), Gaps = 7/124 (5%)
Query: 348 HEFHGHSGEILDLSWSKN-NYLLSASIDKTVRLWRVGNDHCLRVFP---HSNYVTCVHFN 403
H F I +W+K+ + + V ++ + ++V H+ VT V +
Sbjct: 3 HSFLVEP--ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWA 60
Query: 404 PVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFY 463
P D N ++ D +W + + I +I A ++ R
Sbjct: 61 P-DSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVI 119
Query: 464 NVSD 467
++
Sbjct: 120 SICY 123
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 62.6 bits (150), Expect = 5e-11
Identities = 36/346 (10%), Positives = 78/346 (22%), Gaps = 64/346 (18%)
Query: 218 FCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLW 277
C V +Y K H+G + + ++PD + + G D +W
Sbjct: 24 ICPNNHEVHIYEKSGNKWVQVHELKE-----HNGQVTGVDWAPDSNRIVTCGTDRNAYVW 78
Query: 278 QV----------------------------------------------VEDERLTEVDIP 291
+ D + +
Sbjct: 79 TLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKK 138
Query: 292 EIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFH 351
I + + + S L K I + + E P + + E
Sbjct: 139 PIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS 198
Query: 352 GHSGEILDLSWS-KNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYF 410
G + + +S + + S D TV L + + +
Sbjct: 199 SSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLV 258
Query: 411 ISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHL 470
+G D ++ + ++ + + RF N+
Sbjct: 259 AAGH-DCFPVLF--------TYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKAS 309
Query: 471 ELDAEICVHSKKKAPCKRITGFQFLPQDSSKV--MVSC-ADSQVRI 513
+ ++ L +K + D + I
Sbjct: 310 SEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSI 355
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 42.2 bits (97), Expect = 2e-04
Identities = 31/360 (8%), Positives = 83/360 (23%), Gaps = 65/360 (18%)
Query: 252 SILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPE------------------- 292
I ++ D +A ++ V +++ ++ + ++ E
Sbjct: 9 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVT 68
Query: 293 ------------IDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVF 340
+ V + ++ S + + +
Sbjct: 69 CGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEN 128
Query: 341 RILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCV 400
+ S + + L + S D R++ + + + +
Sbjct: 129 DWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKM 188
Query: 401 HFNPV------------------DDNYFISGSIDGKVRIWAV-LSCHVVDWVDIRQIVTA 441
F + + + S D V + V + A
Sbjct: 189 PFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLA 248
Query: 442 VCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSK 501
V + + G + +L + K++ + +T + K
Sbjct: 249 VTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKK 307
Query: 502 VMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGK----HIVSAGEDSNVYMWN 557
+ + L + S GK + G D + +W+
Sbjct: 308 ASSEGSAAAGAGLDS----------LHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD 357
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 40.6 bits (93), Expect = 5e-04
Identities = 15/83 (18%), Positives = 22/83 (26%), Gaps = 4/83 (4%)
Query: 349 EFHGHSGEILDLSWSKNNYLLSA-SIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDD 407
F G S ++DK H N V+ +
Sbjct: 279 SFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGK 338
Query: 408 N---YFISGSIDGKVRIWAVLSC 427
F + +DG + IW V S
Sbjct: 339 AKCSQFCTTGMDGGMSIWDVRSL 361
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 38.7 bits (88), Expect = 0.002
Identities = 15/75 (20%), Positives = 30/75 (40%), Gaps = 3/75 (4%)
Query: 489 ITGFQFLPQDSSKVMVSCADSQVRI--LQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVS 546
I+ + D +++ + + +V I G + ++ +G + D IV+
Sbjct: 10 ISCHAWNK-DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVT 68
Query: 547 AGEDSNVYMWNCIGH 561
G D N Y+W G
Sbjct: 69 CGTDRNAYVWTLKGR 83
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 38.3 bits (87), Expect = 0.002
Identities = 8/37 (21%), Positives = 14/37 (37%), Gaps = 4/37 (10%)
Query: 247 QAHDGSILTMKFSPDGQY----LASAGDDGVVRLWQV 279
H S+ + G+ + G DG + +W V
Sbjct: 322 SLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDV 358
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 62.2 bits (149), Expect = 5e-11
Identities = 38/314 (12%), Positives = 73/314 (23%), Gaps = 14/314 (4%)
Query: 251 GSILTMKFSPDGQYLASA-GDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELK 309
+ + P +A G VR + + V S + + +K
Sbjct: 18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVV-------TTVK 70
Query: 310 PLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLL 369
+ + F + + EF +G I D+SW L
Sbjct: 71 FSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRL 130
Query: 370 ---SASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS 426
D + + L + D ++
Sbjct: 131 CVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGP 190
Query: 427 CHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPC 486
D R G + E + +
Sbjct: 191 PFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEP 250
Query: 487 KRITGFQFLPQDSSKVMVSCADSQVRI--LQGPNVIGKYKGLRRS-GNQLSACFTSDGKH 543
+ F DS K AD+ +R+ + + K+ ++ GNQ +
Sbjct: 251 VQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGR 310
Query: 544 IVSAGEDSNVYMWN 557
I+S D + +
Sbjct: 311 IISLSLDGTLNFYE 324
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.8 bits (101), Expect = 5e-05
Identities = 31/271 (11%), Positives = 75/271 (27%), Gaps = 16/271 (5%)
Query: 249 HDGSILTMKFSP--DGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLS 306
+ T+KFSP QYL S + G V +W D+ V++ +
Sbjct: 62 GSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDI 121
Query: 307 ELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN 366
+ + S + ++ H + ++
Sbjct: 122 SWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDD 181
Query: 367 YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS 426
S+ + ++V V F+P + I+ D K+ + S
Sbjct: 182 G----SVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKS 237
Query: 427 CHVVDWVDIRQIVTAVC----YRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKK 482
+ +++ Q D Q R ++V+ + + + + ++
Sbjct: 238 GEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTS--KCVQKWTLDKQQ 295
Query: 483 KAPCKRITGFQFLPQDSSKVMVSCADSQVRI 513
+ + +++ D +
Sbjct: 296 LG----NQQVGVVATGNGRIISLSLDGTLNF 322
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.0 bits (99), Expect = 8e-05
Identities = 32/307 (10%), Positives = 76/307 (24%), Gaps = 10/307 (3%)
Query: 393 HSNYVTCVHFNPVDDNYFISGSIDGK-VRIWAVLSCHVVDWVDIR----QIVTAVCYRPD 447
N+ T + ++P N VR V V +VT V + P
Sbjct: 16 QRNFTTHLSYDP-TTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPI 74
Query: 448 GQGGIV--GSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVS 505
+ G G + + + E+ V S+ + I+ + + +V
Sbjct: 75 KGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVG 134
Query: 506 CADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPA 565
+ + + +++AC + + S + + G
Sbjct: 135 EGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKF 194
Query: 566 HDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQE 625
+T F + + + +
Sbjct: 195 SASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGG 254
Query: 626 YVFESFPKG--CATWPEEKLPALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTA 683
S+ AT + + ++++ + K + I++
Sbjct: 255 IFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISL 314
Query: 684 GWDGRIR 690
DG +
Sbjct: 315 SLDGTLN 321
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.4 bits (95), Expect = 3e-04
Identities = 27/229 (11%), Positives = 50/229 (21%), Gaps = 13/229 (5%)
Query: 241 YKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYF 300
E Q G I + + +G+ L D + +
Sbjct: 106 NVKSEFQVLAGPISDISWDFEGRRLCV---------VGEGRDNFGVFISWDSGNSLGEVS 156
Query: 301 TVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDL 360
+ L + S+ + E
Sbjct: 157 GHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPD 216
Query: 361 SWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVR 420
S + S + + +D F + D +R
Sbjct: 217 SGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIR 276
Query: 421 IWAVLSCHVVDWVDIRQ---IVTAVCYRPDGQGGIV-GSMMGDCRFYNV 465
+W V + V + + V G G I+ S+ G FY +
Sbjct: 277 VWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 55.7 bits (132), Expect = 6e-09
Identities = 21/248 (8%), Positives = 59/248 (23%), Gaps = 41/248 (16%)
Query: 344 EKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFN 403
++ L GH+ I L+ + L+S S D + W + H HSN + + +
Sbjct: 3 DEVLKTISGHNKGITALTVNP---LISGSYDGRIMEWSSSSMHQ----DHSNLIVSLDNS 55
Query: 404 P--------------------VDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVC 443
+ + AVL+ + +
Sbjct: 56 KAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIK 115
Query: 444 YRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITG------------ 491
G S+ + + + + ++ +
Sbjct: 116 SVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSET 175
Query: 492 --FQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGE 549
+ + + + + + + +
Sbjct: 176 YIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSL 235
Query: 550 DSNVYMWN 557
D+N+++++
Sbjct: 236 DTNIFIYS 243
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.8 bits (127), Expect = 2e-08
Identities = 9/80 (11%), Positives = 30/80 (37%), Gaps = 4/80 (5%)
Query: 348 HEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGND-HCLRVFP-HSNYVTCVHFNPV 405
+ + + + + + + S+D + ++ V ++ H + V + +
Sbjct: 210 AISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET- 268
Query: 406 DDNYFISGSIDGKVRIWAVL 425
+ +S D ++ W V+
Sbjct: 269 -PSTLVSSGADACIKRWNVV 287
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.7 bits (124), Expect = 5e-08
Identities = 40/318 (12%), Positives = 86/318 (27%), Gaps = 39/318 (12%)
Query: 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVN 303
+ I H+ I + +P L S DG + W + I +D S
Sbjct: 7 KTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNS------- 55
Query: 304 HLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS 363
A L+ H + S +
Sbjct: 56 --------------------------KAQEYSSISWDDTLKVNGITKHEFGSQPKVASAN 89
Query: 364 KNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWA 423
+ + + D + + + ++ ++ + V + + +V +
Sbjct: 90 NDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLS 149
Query: 424 VLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKK 483
L +R + + P G +MG Y++ ++ SK
Sbjct: 150 DLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKIN 209
Query: 484 APCKRITGFQ--FLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDG 541
A + + V D+ + I + K L + ++
Sbjct: 210 AISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETP 269
Query: 542 KHIVSAGEDSNVYMWNCI 559
+VS+G D+ + WN +
Sbjct: 270 STLVSSGADACIKRWNVV 287
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.5 bits (108), Expect = 6e-06
Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 7/69 (10%)
Query: 212 NEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDD 271
E+ S + +Y K+ K + AL AH + + + L S+G D
Sbjct: 226 EEDLVATGSLDTNIFIYSVKRPMKIIKAL------NAHKDGVNNLLWETPS-TLVSSGAD 278
Query: 272 GVVRLWQVV 280
++ W VV
Sbjct: 279 ACIKRWNVV 287
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 54.0 bits (128), Expect = 2e-08
Identities = 27/333 (8%), Positives = 66/333 (19%), Gaps = 50/333 (15%)
Query: 258 FSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPE-IDPSCIYFTVNHLSELKPLFMDKE 316
+Y+ + + V D +P+ P D
Sbjct: 4 LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMA-----------PDNR 52
Query: 317 KISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKT 376
+L + + F + G S +S + +
Sbjct: 53 TAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAIS-PDGKEVYATVNPTQ 111
Query: 377 VRLWRVGNDHCLRVFPHSNYVTCVH----FNPVDDNYFISGSIDGKVRIWAVLSCHVVDW 432
+ F Y + + DG + +
Sbjct: 112 RLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAG--PDIYKMD 169
Query: 433 VDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLE--------------------- 471
V + A+ + + + + S H
Sbjct: 170 VKTGKYTVALPL-RNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADL 228
Query: 472 ------LDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKG 525
+D + ++ F L + +++ K
Sbjct: 229 LYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQ--RKLIK 286
Query: 526 LRRSGNQ-LSACFTSDGKHIVSAGEDSNVYMWN 557
+ F G + G +++ ++N
Sbjct: 287 AANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFN 319
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 50.1 bits (118), Expect = 5e-07
Identities = 20/260 (7%), Positives = 53/260 (20%), Gaps = 18/260 (6%)
Query: 224 RVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLW------ 277
+ K S+ + SPDG+ + + +
Sbjct: 63 DIYGIDLDTC-KNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKP 121
Query: 278 ---QVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISI--------LKSLRR 326
+V E P + ++ L++ I +L
Sbjct: 122 PRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPL 181
Query: 327 TSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDH 386
+ + P V + +A + +
Sbjct: 182 RNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGK 241
Query: 387 CLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRP 446
+ + ++ + + ++ ++ V +
Sbjct: 242 THTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAFDK 301
Query: 447 DGQGGIVGSMMGDCRFYNVS 466
G +G D +N
Sbjct: 302 KGDKLYLGGTFNDLAVFNPD 321
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 45.1 bits (105), Expect = 2e-05
Identities = 9/48 (18%), Positives = 18/48 (37%)
Query: 249 HDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPS 296
D + + F G L G + ++ E++ + +P D S
Sbjct: 290 LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGGDMS 337
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 53.8 bits (127), Expect = 2e-08
Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 3/63 (4%)
Query: 362 WSKNNYLLSASIDKTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSIDGKV 419
+ SAS DKT+++W V + P + +S S +G +
Sbjct: 247 SPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW-TKQALVSISANGFI 305
Query: 420 RIW 422
Sbjct: 306 NFV 308
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 52.2 bits (123), Expect = 9e-08
Identities = 28/218 (12%), Positives = 50/218 (22%), Gaps = 5/218 (2%)
Query: 345 KPLHEFHGHSGEILDLSWSKN-NYLLSASIDKTVRLWRVGNDHCLRVFP---HSNYVTCV 400
+ HS + S + Y S + VR+W + S V +
Sbjct: 49 TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDI 108
Query: 401 HFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDC 460
++ G + + + Q D
Sbjct: 109 SWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDD 168
Query: 461 RFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLP-QDSSKVMVSCADSQVRILQGPNV 519
+ + K R L + + G
Sbjct: 169 NTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFE 228
Query: 520 IGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWN 557
K + SG+ ++ DG I SA D + +WN
Sbjct: 229 DDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWN 266
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 48.7 bits (114), Expect = 1e-06
Identities = 42/258 (16%), Positives = 63/258 (24%), Gaps = 37/258 (14%)
Query: 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIP------------ 291
+ H K SP G Y AS G VR+W + + + IP
Sbjct: 52 EIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWD 111
Query: 292 ----------------EIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVF 335
T N + M+ + R S S
Sbjct: 112 SESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTV 171
Query: 336 PPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSN 395
+ + S D T+ L+ + VF +
Sbjct: 172 AIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDS 231
Query: 396 YVTCVHFNPV-------DDNYFISGSIDGKVRIWAVLSCHVVDWVDI--RQIVTAVCYRP 446
H V D S S D ++IW V + V + + R +
Sbjct: 232 LKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW 291
Query: 447 DGQGGIVGSMMGDCRFYN 464
Q + S G F N
Sbjct: 292 TKQALVSISANGFINFVN 309
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 48.0 bits (112), Expect = 2e-06
Identities = 34/309 (11%), Positives = 62/309 (20%), Gaps = 19/309 (6%)
Query: 251 GSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKP 310
G+ + + +P G + V V + H +
Sbjct: 18 GTAVVLGNTPAGDKIQYCNGTSVY-TVPVG-------------SLTDTEIYTEHSHQTTV 63
Query: 311 LFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLS 370
+ P+ S
Sbjct: 64 AKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEG 123
Query: 371 ASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV 430
V L+ G + + +
Sbjct: 124 RERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKS 183
Query: 431 DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRIT 490
+ + + V +V Y PDG G YN D S K
Sbjct: 184 TFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDG--TKTGVFEDDSLKNVAHSGSV 241
Query: 491 GFQFLPQDSSKVMVSCADSQVRI--LQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAG 548
D +K+ + AD ++I + V R +Q + +VS
Sbjct: 242 FGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQ-QLGIIWTKQALVSIS 300
Query: 549 EDSNVYMWN 557
+ + N
Sbjct: 301 ANGFINFVN 309
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 52.9 bits (125), Expect = 6e-08
Identities = 28/315 (8%), Positives = 81/315 (25%), Gaps = 37/315 (11%)
Query: 245 EIQAHDGSILTMKFSPDGQYL-ASAGDDGVVRLWQVVEDERLTEVDIPE-IDPSCIYFTV 302
I + + +P G+ A+ + +V E L +D+ + F
Sbjct: 28 TIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGA 87
Query: 303 NHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSW 362
+ K L + + + + + + ++ + + +I L+W
Sbjct: 88 ALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRK-----AFEAPRQITMLAW 142
Query: 363 SKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIW 422
+++ L + + + + + P ++ + P + G +
Sbjct: 143 ARDGSKL-YGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATP 201
Query: 423 AVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKK 482
+ +D D T + G + +
Sbjct: 202 FYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRI-------------------MDVF 242
Query: 483 KAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGK 542
+ + + I K + + S ++DG
Sbjct: 243 YFSTAVNPAKTRAFGAYNVLESFDLEKNASI----------KRVPLPHSYYSVNVSTDGS 292
Query: 543 HIVSAGEDSNVYMWN 557
+ G ++ ++
Sbjct: 293 TVWLGGALGDLAAYD 307
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 46.0 bits (107), Expect = 9e-06
Identities = 10/43 (23%), Positives = 18/43 (41%)
Query: 249 HDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIP 291
S ++ S DG + G G + + E+ +VD+P
Sbjct: 278 LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLP 320
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 39.8 bits (91), Expect = 7e-04
Identities = 13/122 (10%), Positives = 29/122 (23%), Gaps = 5/122 (4%)
Query: 346 PLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRV--FPHSNYVTCVHFN 403
HE G + + + + + + N
Sbjct: 190 NQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVN 249
Query: 404 PVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFY 463
P + + + + + V + +V DG +G +GD Y
Sbjct: 250 P---AKTRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAY 306
Query: 464 NV 465
+
Sbjct: 307 DA 308
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 50.0 bits (118), Expect = 7e-07
Identities = 15/217 (6%), Positives = 54/217 (24%), Gaps = 16/217 (7%)
Query: 363 SKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIW 422
N + ++ + L + ++V V + Y + D ++ +
Sbjct: 30 LPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSA-SGRYLLVIGRDARIDMI 88
Query: 423 AVLSCHVVDWVDI------RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEI 476
+ + +I R + ++ + + I G+ +
Sbjct: 89 DLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETL------- 141
Query: 477 CVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRI--LQGPNVIGKYKGLRRSGNQLS 534
+ + P+ +++ + I ++ + ++
Sbjct: 142 EPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVT 201
Query: 535 ACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKT 571
+ + +M + A +K
Sbjct: 202 SIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKD 238
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 42.6 bits (99), Expect = 1e-04
Identities = 22/179 (12%), Positives = 54/179 (30%), Gaps = 4/179 (2%)
Query: 405 VDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYN 464
+ + + ++ G++ + S +V +D V G+ +V +
Sbjct: 30 LPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMID 89
Query: 465 VSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYK 524
+ AEI + + +D + + Q I+ G + K
Sbjct: 90 LWAKEPTKVAEIKIGI---EARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQI 146
Query: 525 GLRRSGNQLSACFTSDGK-HIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNA 582
R + + + + + A + ++ N + K I +L + A
Sbjct: 147 VSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGA 205
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 41.9 bits (97), Expect = 2e-04
Identities = 18/179 (10%), Positives = 45/179 (25%), Gaps = 14/179 (7%)
Query: 256 MKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPE-IDPSCIYFTVNHLSELKPLFMD 314
+ S G+YL G D + + + E +I I+ + + E +
Sbjct: 67 SRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIA- 125
Query: 315 KEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASID 374
+ + K + G + + + AS +
Sbjct: 126 ------------GAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHE 173
Query: 375 KTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV 433
+ V + + + + + + G D R + + +
Sbjct: 174 HPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVA 232
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 46.3 bits (108), Expect = 7e-06
Identities = 27/285 (9%), Positives = 65/285 (22%), Gaps = 26/285 (9%)
Query: 251 GSILTMKFSPDGQYLASAG----------DDGVVRLWQVVEDERLTEVDIPEIDPSCIYF 300
G + + DG ++A A V ++ V +++ P F
Sbjct: 47 GFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIE----LPDAPRF 102
Query: 301 TVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDL 360
V + L D + + + + + R+L+ P +
Sbjct: 103 LVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFF 162
Query: 361 SWSKNNYLLSASIDKTVRLW-------RVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISG 413
++ L + ++ + +S + +
Sbjct: 163 MHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQID 222
Query: 414 SIDGKVRIWAVLSCHVVDWVDI---RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHL 470
G + + V Y + D + + +
Sbjct: 223 LSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFV 282
Query: 471 EL-DAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCA-DSQVRI 513
+ DA+ K I + + D + I
Sbjct: 283 VVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYI 327
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 46.1 bits (108), Expect = 9e-06
Identities = 12/194 (6%), Positives = 33/194 (17%), Gaps = 13/194 (6%)
Query: 247 QAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPE---IDPSCIYFTVN 303
+ S AS V + + + +
Sbjct: 170 IHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV 229
Query: 304 HLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS 363
S L+ S F + +
Sbjct: 230 ASSILQGDIPAAGATMKAAIDGNESGRKADNFRS-------AGFQMVAKLKNTDGIMILT 282
Query: 364 KNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNY--FISGSIDGKVRI 421
+ + + + + + D + + + + I
Sbjct: 283 VEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQ-DGASDNYANSAGTEVLDI 341
Query: 422 WAVLSCHVVDWVDI 435
+ S V++
Sbjct: 342 YDAASDQDQSSVEL 355
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Score = 41.4 bits (95), Expect = 2e-04
Identities = 44/306 (14%), Positives = 79/306 (25%), Gaps = 42/306 (13%)
Query: 248 AHDGSILTMKFSPDGQYL-ASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLS 306
G + M SPD +YL + V +++ D+ P ++ H+S
Sbjct: 34 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG----SLTHIS 89
Query: 307 ELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN 366
+ + + S + S + +++ HS ++S
Sbjct: 90 -----TDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHS---ANISPDNRT 141
Query: 367 YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLS 426
+ A + L+ V +D L + T P + +
Sbjct: 142 LWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRH--------------MVFHPN 187
Query: 427 CHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPC 486
V+ V D G I D N SD P
Sbjct: 188 EQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTR-------WAADIHITPD 240
Query: 487 KRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVS 546
R V D V +G GK++++
Sbjct: 241 GRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ--------PRGFNVDHSGKYLIA 292
Query: 547 AGEDSN 552
AG+ S+
Sbjct: 293 AGQKSH 298
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Score = 39.8 bits (91), Expect = 8e-04
Identities = 24/283 (8%), Positives = 69/283 (24%), Gaps = 29/283 (10%)
Query: 364 KNNYLLSASIDKTVRLWRVGNDHCL---RVFPHSNYVTCVHFNPVDDNYFISGSIDGKVR 420
K +++ + + +W + ++ L +V V + +P ++ + +V
Sbjct: 3 KQTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVL 62
Query: 421 IWAV----LSCHVVDWVDIRQIVTAVCYRPDGQGGIVGS-MMGDCRFYNVSDNHLELDAE 475
+ + + + +T + GQ VGS G+ + D +
Sbjct: 63 AYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVD 122
Query: 476 ICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSA 535
+ + L + K C +
Sbjct: 123 VVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHM 182
Query: 536 CFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIA---------- 585
F + ++ E ++ + + +T+ + ++ A
Sbjct: 183 VFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGR 242
Query: 586 -----------IPWCGLKCGNAEKEPQLHVSDDDSPENLAFAP 617
I + + + + P
Sbjct: 243 HLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDH 285
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 41.7 bits (97), Expect = 3e-04
Identities = 16/98 (16%), Positives = 29/98 (29%), Gaps = 7/98 (7%)
Query: 364 KNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWA 423
+N + ++ + L V V + Y DGKV +
Sbjct: 31 ENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSA-SGRYLFVIGRDGKVNMID 89
Query: 424 V--LSCHVVDWVDI----RQIVTAVCYRPDGQGGIVGS 455
+ V + I R I T+ + + I G+
Sbjct: 90 LWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGA 127
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 39.0 bits (90), Expect = 0.002
Identities = 22/170 (12%), Positives = 50/170 (29%), Gaps = 6/170 (3%)
Query: 256 MKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPE-IDPSCIYFTVNHLSELKPLFMD 314
+ S G+YL G DG V + + E T +I + I + E K
Sbjct: 67 SRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAG 126
Query: 315 KEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASID 374
+ + + + E+ H + S + ++++
Sbjct: 127 AYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYH--PEPRVAAILASHYRPEFIVNVKET 184
Query: 375 KTVRLWRVGNDHCLRVF--PHSNYVTCVHFNPVDDNYFISGSIDGKVRIW 422
+ L + + L+ ++ + YFI+ + +
Sbjct: 185 GKILLVDYTDLNNLKTTEISAERFLHDGGLDG-SHRYFITAANARNKLVV 233
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 39.0 bits (90), Expect = 0.002
Identities = 21/184 (11%), Positives = 51/184 (27%), Gaps = 17/184 (9%)
Query: 405 VDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYN 464
+++ + ++ G++ + + + +D V G+ V G +
Sbjct: 30 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMID 89
Query: 465 VSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSC-ADSQVRILQGPNVIGKY 523
+ AEI + S + I + + + Q I+ G + K
Sbjct: 90 LWMKEPTTVAEIKIGS----EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKK 145
Query: 524 KGLRRSGNQLSACFTSDGKH------------IVSAGEDSNVYMWNCIGHEEPAHDQAKT 571
R + + + IV+ E + + + +
Sbjct: 146 IQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISA 205
Query: 572 IRSL 575
R L
Sbjct: 206 ERFL 209
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 41.0 bits (94), Expect = 3e-04
Identities = 27/248 (10%), Positives = 67/248 (27%), Gaps = 1/248 (0%)
Query: 370 SASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHV 429
+ S + + V ++ P + +P +++ + V I + +V
Sbjct: 7 ANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV 66
Query: 430 VDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRI 489
+ V V PDG+ V +M + ++ S
Sbjct: 67 IATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPD 126
Query: 490 TGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGE 549
++ + K + ++ +V KG+ + + + +S +
Sbjct: 127 GKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVID 186
Query: 550 DSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDS 609
+ + + E A + + TN + +
Sbjct: 187 TVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVS-MIDTGTNKITARIPVGPD 245
Query: 610 PENLAFAP 617
P +A P
Sbjct: 246 PAGIAVTP 253
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 37.5 bits (85), Expect = 0.004
Identities = 13/81 (16%), Positives = 25/81 (30%), Gaps = 7/81 (8%)
Query: 376 TVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDI 435
TV + G + P + P +++ S V + + + +
Sbjct: 225 TVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATM-- 282
Query: 436 RQIVTAVCYRPDGQGGIVGSM 456
AV P G +GS+
Sbjct: 283 -----AVGKNPYASGQFIGSI 298
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 701 | |||
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.98 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.97 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.97 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.97 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.96 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.96 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.96 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.96 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.96 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.96 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.96 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.95 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.94 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.94 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.93 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.91 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.87 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.87 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.85 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.83 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.8 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.79 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.78 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.77 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.76 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.76 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.7 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.64 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.62 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.61 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.59 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.49 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.33 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.26 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.19 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.17 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.16 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.99 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.89 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.89 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.86 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.84 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.81 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.71 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.71 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.71 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.63 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.62 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.44 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.25 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.23 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.13 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.07 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 97.9 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 97.88 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 97.81 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 97.72 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.54 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 97.41 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.38 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.23 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 96.98 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 96.71 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 96.67 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 96.35 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 95.58 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 95.23 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 95.21 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 95.16 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 95.01 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 94.63 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 94.06 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 93.19 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 92.92 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 92.14 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 91.88 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 91.12 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 91.07 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 90.97 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 90.66 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 90.36 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 90.08 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 88.33 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 86.52 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 84.34 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 84.17 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 81.82 |
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.5e-35 Score=308.76 Aligned_cols=283 Identities=17% Similarity=0.265 Sum_probs=240.0
Q ss_pred cccCcceeeec--CccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEE
Q 005352 201 DKQGEGERVRL--NEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQ 278 (701)
Q Consensus 201 ~~~~~~~~~~~--~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd 278 (701)
.|...+.++.+ ++..+++|+ |+.|+||++....... ........+|.+.|.+|+|+|+|++|++|+.||.|++||
T Consensus 49 ~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~--~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd 125 (337)
T d1gxra_ 49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS--PVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWD 125 (337)
T ss_dssp CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS--CSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEE
T ss_pred CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccc--eeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccccc
Confidence 56666766554 455777776 8999999986543211 111224567999999999999999999999999999999
Q ss_pred eecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeE
Q 005352 279 VVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEIL 358 (701)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~ 358 (701)
+..... +....+.+|...|.
T Consensus 126 ~~~~~~------------------------------------------------------------~~~~~~~~~~~~v~ 145 (337)
T d1gxra_ 126 LAAPTP------------------------------------------------------------RIKAELTSSAPACY 145 (337)
T ss_dssp CCCC--------------------------------------------------------------EEEEEEECSSSCEE
T ss_pred cccccc------------------------------------------------------------cccccccccccccc
Confidence 865431 12345677899999
Q ss_pred EEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCC
Q 005352 359 DLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIR 436 (701)
Q Consensus 359 ~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~ 436 (701)
+++|+|++ ++++++.|+.|++|++.++++..... |...|++++|++ ++..+++++.|+.|++||+++++.+....+.
T Consensus 146 ~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~-~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~~ 224 (337)
T d1gxra_ 146 ALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISN-DGTKLWTGGLDNTVRSWDLREGRQLQQHDFT 224 (337)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECS
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccceeecccccc
Confidence 99999999 99999999999999999999887776 889999999999 9999999999999999999999999888999
Q ss_pred CcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeC
Q 005352 437 QIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQG 516 (701)
Q Consensus 437 ~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~ 516 (701)
..|++++|+|+++.|++|+.++.+++||++...... ...|...|++++|+| ++.+|++++.|+.|++||.
T Consensus 225 ~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~---------~~~~~~~i~~v~~s~-~g~~l~s~s~Dg~i~iwd~ 294 (337)
T d1gxra_ 225 SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ---------LHLHESCVLSLKFAY-CGKWFVSTGKDNLLNAWRT 294 (337)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE---------ECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEET
T ss_pred cceEEEEEcccccccceecccccccccccccccccc---------ccccccccceEEECC-CCCEEEEEeCCCeEEEEEC
Confidence 999999999999999999999999999998876432 234667899999999 7889999999999999999
Q ss_pred CccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 005352 517 PNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNC 558 (701)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~ 558 (701)
.+....... .|...|.+++|+|++++|++|+.||+|+|||+
T Consensus 295 ~~~~~~~~~-~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 295 PYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp TTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred CCCCEEEEc-cCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence 876655443 47889999999999999999999999999996
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.1e-34 Score=302.18 Aligned_cols=245 Identities=16% Similarity=0.239 Sum_probs=207.3
Q ss_pred cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeec
Q 005352 248 AHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRT 327 (701)
Q Consensus 248 ~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (701)
.|...|++|+|+|+|++||||+ ||.|+|||+.+......
T Consensus 49 ~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~---------------------------------------- 87 (337)
T d1gxra_ 49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSP---------------------------------------- 87 (337)
T ss_dssp CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSC----------------------------------------
T ss_pred CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccce----------------------------------------
Confidence 6999999999999999999998 79999999976532110
Q ss_pred CCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCe--eeeeec-CCCCeEEEEEe
Q 005352 328 SESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDH--CLRVFP-HSNYVTCVHFN 403 (701)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~--~~~~~~-h~~~V~~l~f~ 403 (701)
.......+|.+.|.+++|+|++ +|++++.|++|++||+.... ....+. |...+.+++|+
T Consensus 88 -----------------~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~ 150 (337)
T d1gxra_ 88 -----------------VSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAIS 150 (337)
T ss_dssp -----------------SEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEEC
T ss_pred -----------------eEEeeecCCCCcEEEEEEcCCCCEEEEeecccccccccccccccccccccccccccccccccc
Confidence 1122345799999999999999 99999999999999987554 444443 88899999999
Q ss_pred eCCCCEEEEEEcCCcEEEEeCCCCcEEE-EecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeeccc
Q 005352 404 PVDDNYFISGSIDGKVRIWAVLSCHVVD-WVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKK 482 (701)
Q Consensus 404 p~~~~~l~sgs~dg~v~iwd~~~~~~~~-~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~ 482 (701)
| ++.++++++.|+.|++|++.+++... ...+...+++++|++++..+++++.|+.+++||+++++.....
T Consensus 151 ~-~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~-------- 221 (337)
T d1gxra_ 151 P-DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH-------- 221 (337)
T ss_dssp T-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE--------
T ss_pred c-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeccc--------
Confidence 9 99999999999999999999988764 4457889999999999999999999999999999988754321
Q ss_pred CCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 483 KAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 483 ~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
.+...|.+++|+| ++.++++++.|+.|++||+..... +....|...|++++|+|++++|++++.||.|++||+.+++
T Consensus 222 -~~~~~i~~l~~~~-~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~ 298 (337)
T d1gxra_ 222 -DFTSQIFSLGYCP-TGEWLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA 298 (337)
T ss_dssp -ECSSCEEEEEECT-TSSEEEEEETTSCEEEEETTSSCE-EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred -ccccceEEEEEcc-cccccceecccccccccccccccc-ccccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCC
Confidence 2446799999999 789999999999999999986554 3445588999999999999999999999999999977654
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2.7e-34 Score=292.95 Aligned_cols=248 Identities=19% Similarity=0.357 Sum_probs=215.6
Q ss_pred ceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEE
Q 005352 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (701)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (701)
..|+||+++|++|+|+|++++||||+.||+|+|||+.+++
T Consensus 11 ~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~---------------------------------------- 50 (317)
T d1vyhc1 11 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD---------------------------------------- 50 (317)
T ss_dssp CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCC----------------------------------------
T ss_pred EEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC----------------------------------------
Confidence 4689999999999999999999999999999999997763
Q ss_pred eeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEE
Q 005352 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVH 401 (701)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~ 401 (701)
.+..+.+|...|.+++|++++ +++++..++.+.+|+....+....+. |...+.++.
T Consensus 51 ----------------------~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (317)
T d1vyhc1 51 ----------------------FERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVS 108 (317)
T ss_dssp ----------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEE
T ss_pred ----------------------EEEEEeCCCCcEEEEeeecccccccccccccccccccccccccccccccccccceeee
Confidence 455677899999999999999 99999999999999998887776665 889999999
Q ss_pred EeeCCCCEEEEEEcCCcEEEEeCCCCcEEE-EecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeec
Q 005352 402 FNPVDDNYFISGSIDGKVRIWAVLSCHVVD-WVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHS 480 (701)
Q Consensus 402 f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~-~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~ 480 (701)
|+| +++.+++++.|+.+++||+++++.+. +..+...+.+++|+|++++|++++.|+.|++|++.+......
T Consensus 109 ~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~------- 180 (317)
T d1vyhc1 109 IMP-NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAE------- 180 (317)
T ss_dssp ECS-SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE-------
T ss_pred ccC-CCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEE-------
Confidence 999 99999999999999999999988774 456788999999999999999999999999999998765432
Q ss_pred ccCCCCCCeeEEEEecC-------------------CCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCC
Q 005352 481 KKKAPCKRITGFQFLPQ-------------------DSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDG 541 (701)
Q Consensus 481 ~~~~~~~~i~~l~~~p~-------------------~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg 541 (701)
...+...+.++.+.|. .+..+++++.|+.|++||..+.........|...|.+++|+|++
T Consensus 181 -~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 259 (317)
T d1vyhc1 181 -LREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGG 259 (317)
T ss_dssp -ECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSS
T ss_pred -EecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCC
Confidence 1234455666766652 34578999999999999999877766666689999999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCCC
Q 005352 542 KHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 542 ~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
++|++|+.||.|+|||+.+++
T Consensus 260 ~~l~s~~~dg~i~iwd~~~~~ 280 (317)
T d1vyhc1 260 KFILSCADDKTLRVWDYKNKR 280 (317)
T ss_dssp SCEEEEETTTEEEEECCTTSC
T ss_pred CEEEEEECCCeEEEEECCCCc
Confidence 999999999999999987654
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.3e-34 Score=303.59 Aligned_cols=342 Identities=18% Similarity=0.254 Sum_probs=252.1
Q ss_pred ccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCc
Q 005352 217 MFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPS 296 (701)
Q Consensus 217 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~ 296 (701)
+....++.+.+|+..........+ ....+|++.|+||+|+|||++||+|+ |++|+|||+.+++.+..+........
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~ 107 (388)
T d1erja_ 32 LKKQTNDYYILYNPALPREIDVEL---HKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANK 107 (388)
T ss_dssp SEEECSSCEEEECTTSCCCEEEEE---EEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC------
T ss_pred cccCCCCcEEEeCCCCCcceeeee---EeeCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccc
Confidence 446677788899753221111111 12336999999999999999999987 89999999999887665543221100
Q ss_pred eeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCC
Q 005352 297 CIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDK 375 (701)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg 375 (701)
. ..........+|...|++++|+|++ +|++|+.||
T Consensus 108 ~--------------------------------------------~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg 143 (388)
T d1erja_ 108 D--------------------------------------------PENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDR 143 (388)
T ss_dssp -------------------------------------------------------CCCCBEEEEEECTTSSEEEEEETTS
T ss_pred c--------------------------------------------ccccccccccCCCCCEEEEEECCCCCcceeccccc
Confidence 0 0001122345788999999999999 999999999
Q ss_pred cEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEee-CCCeEEE
Q 005352 376 TVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRP-DGQGGIV 453 (701)
Q Consensus 376 ~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp-~g~~l~~ 453 (701)
.|++||...++.+..+. |...|.+++|++ ++..+++++.++.+++||+.+........+.....++.+.+ ++++|++
T Consensus 144 ~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 222 (388)
T d1erja_ 144 LIRIWDIENRKIVMILQGHEQDIYSLDYFP-SGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAA 222 (388)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEE
T ss_pred cccccccccccccccccccccccccccccc-ccccccccccceeeeeeeccccccccccccccccccccccCCCCCeEEE
Confidence 99999999999888876 899999999999 89999999999999999999998887777777777777766 7889999
Q ss_pred EecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccce------------
Q 005352 454 GSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIG------------ 521 (701)
Q Consensus 454 gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~------------ 521 (701)
|+.||.|++|++.+........... .....|...|.+++|+| ++.+|++++.|+.|++||+.....
T Consensus 223 ~~~d~~i~i~~~~~~~~~~~~~~~~-~~~~~h~~~v~~l~~s~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 300 (388)
T d1erja_ 223 GSLDRAVRVWDSETGFLVERLDSEN-ESGTGHKDSVYSVVFTR-DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTC 300 (388)
T ss_dssp EETTSCEEEEETTTCCEEEEEC-------CCCSSCEEEEEECT-TSSEEEEEETTSEEEEEEC---------------CE
T ss_pred EcCCCeEEEeecccCccceeecccc-ccccCCCCCEEEEEECC-CCCEEEEEECCCcEEEEeccCCccccccccccccce
Confidence 9999999999999877654332211 12345678899999999 789999999999999999864321
Q ss_pred eeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCc
Q 005352 522 KYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQ 601 (701)
Q Consensus 522 ~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 601 (701)
......|...|.+++|+|++++|++|+.||.|++||+.+++. +..+.. +.+.+..+.+..
T Consensus 301 ~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~--------~~~l~~-H~~~V~~~~~~~----------- 360 (388)
T d1erja_ 301 EVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNP--------LLMLQG-HRNSVISVAVAN----------- 360 (388)
T ss_dssp EEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCE--------EEEEEC-CSSCEEEEEECS-----------
T ss_pred eeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcE--------EEEEeC-CCCCEEEEEEec-----------
Confidence 223344788999999999999999999999999999988762 122211 123333333321
Q ss_pred cccCCCCCCCccccCCCccccCccccccCCCCcccCCCCccC
Q 005352 602 LHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEKL 643 (701)
Q Consensus 602 ~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~~~ 643 (701)
.+.|+|+ +..+++++.|+.|++|+.+++
T Consensus 361 ----------~~~~spd----~~~l~s~s~Dg~I~iW~~~k~ 388 (388)
T d1erja_ 361 ----------GSSLGPE----YNVFATGSGDCKARIWKYKKI 388 (388)
T ss_dssp ----------SCTTCTT----CEEEEEEETTSEEEEEEEEEC
T ss_pred ----------CcccCCC----CCEEEEEeCCCEEEEEeeeeC
Confidence 2356776 778899999999999997663
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=9.1e-34 Score=291.90 Aligned_cols=282 Identities=18% Similarity=0.195 Sum_probs=223.3
Q ss_pred eeeecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeee
Q 005352 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLT 286 (701)
Q Consensus 207 ~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~ 286 (701)
.+.+++++.++++ .++.|.+|+.... ...+.+.+|.+.|++++|+|+|++||+|+.||+|+|||+.+++.
T Consensus 23 ~a~~~~g~~l~~~-~~~~v~i~~~~~~-------~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~-- 92 (311)
T d1nr0a1 23 LGNTPAGDKIQYC-NGTSVYTVPVGSL-------TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTH-- 92 (311)
T ss_dssp CEECTTSSEEEEE-ETTEEEEEETTCS-------SCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTC--
T ss_pred EEEcCCCCEEEEE-eCCEEEEEECCCC-------ceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeecccc--
Confidence 4556667777766 4667999987533 22235678999999999999999999999999999999987642
Q ss_pred eecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC
Q 005352 287 EVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN 366 (701)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~ 366 (701)
.....+.+|...|.+++|+|++
T Consensus 93 ----------------------------------------------------------~~~~~~~~~~~~v~~v~~s~d~ 114 (311)
T d1nr0a1 93 ----------------------------------------------------------ILKTTIPVFSGPVKDISWDSES 114 (311)
T ss_dssp ----------------------------------------------------------CEEEEEECSSSCEEEEEECTTS
T ss_pred ----------------------------------------------------------ccccccccccCccccccccccc
Confidence 1123467899999999999999
Q ss_pred -eEEEEEC--CCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCC-EEEEEEcCCcEEEEeCCCCcEEEE-ecCCCcEE
Q 005352 367 -YLLSASI--DKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDN-YFISGSIDGKVRIWAVLSCHVVDW-VDIRQIVT 440 (701)
Q Consensus 367 -~l~s~s~--dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~-~l~sgs~dg~v~iwd~~~~~~~~~-~~~~~~i~ 440 (701)
+|++++. +..+++|++.+++.+..+. |...|++++|+| ++. .|++|+.|+.|++||+++++.... ..|...|+
T Consensus 115 ~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~-~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~ 193 (311)
T d1nr0a1 115 KRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKP-SRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVH 193 (311)
T ss_dssp CEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECS-SSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccc-cceeeeccccccccccccccccccccccccccccccc
Confidence 8888875 4669999999998888776 889999999999 655 588999999999999999887754 46788999
Q ss_pred EEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccc
Q 005352 441 AVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVI 520 (701)
Q Consensus 441 ~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~ 520 (701)
+++|+|+++++++++.||.|++||+.++......... ......|...|++++|+| ++++|++|+.|+.|+|||..+..
T Consensus 194 ~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~-~~~~~~h~~~V~~~~~s~-~~~~l~tgs~Dg~v~iwd~~t~~ 271 (311)
T d1nr0a1 194 SVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDD-SLKNVAHSGSVFGLTWSP-DGTKIASASADKTIKIWNVATLK 271 (311)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCT-TSSSCSSSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTE
T ss_pred ccccCcccccccccccccccccccccccccccccccc-ccccccccccccccccCC-CCCEEEEEeCCCeEEEEECCCCc
Confidence 9999999999999999999999999987654332211 112345678899999999 78999999999999999998665
Q ss_pred eeeecccCC-CCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 005352 521 GKYKGLRRS-GNQLSACFTSDGKHIVSAGEDSNVYMWNCI 559 (701)
Q Consensus 521 ~~~~~~~~~-~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~ 559 (701)
.......+. .....+.+.+++++|++++.||.|++||++
T Consensus 272 ~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 272 VEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE 311 (311)
T ss_dssp EEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred EEEEEECCCCccceEEEEEecCCEEEEEECCCEEEEEeCC
Confidence 443332222 122334455567789999999999999974
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=9.9e-33 Score=292.10 Aligned_cols=296 Identities=20% Similarity=0.321 Sum_probs=232.7
Q ss_pred ecccCcceeeecC--ccccccccccceEEEEEccCccchhh-----------hcccCceeccCCCcEEEEEEccCCCEEE
Q 005352 200 VDKQGEGERVRLN--EEDAMFCSKVQRVKVYHCKKRSKELS-----------ALYKGQEIQAHDGSILTMKFSPDGQYLA 266 (701)
Q Consensus 200 ~~~~~~~~~~~~~--~~~~~~~~~d~~v~vw~~~~~~~~~~-----------~~~~~~~l~~H~~~I~~l~fspdg~~La 266 (701)
.+|.+.+.+++++ +..+++|+ |+.|+||++........ .........+|...|++|+|+|+|++|+
T Consensus 59 ~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~ 137 (388)
T d1erja_ 59 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA 137 (388)
T ss_dssp EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred CCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcce
Confidence 3577777776654 45666665 99999999864332100 0111223457899999999999999999
Q ss_pred EEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCC
Q 005352 267 SAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKP 346 (701)
Q Consensus 267 sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (701)
+|+.||.|++|+...++.
T Consensus 138 s~~~dg~v~i~~~~~~~~-------------------------------------------------------------- 155 (388)
T d1erja_ 138 TGAEDRLIRIWDIENRKI-------------------------------------------------------------- 155 (388)
T ss_dssp EEETTSCEEEEETTTTEE--------------------------------------------------------------
T ss_pred eccccccccccccccccc--------------------------------------------------------------
Confidence 999999999999877642
Q ss_pred eEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCC
Q 005352 347 LHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVL 425 (701)
Q Consensus 347 ~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~ 425 (701)
+..+.+|...|.+++|++++ .+++++.++.|++||..+........+.....++.+.+.++++|++++.||.|++||+.
T Consensus 156 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~ 235 (388)
T d1erja_ 156 VMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSE 235 (388)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETT
T ss_pred ccccccccccccccccccccccccccccceeeeeeeccccccccccccccccccccccCCCCCeEEEEcCCCeEEEeecc
Confidence 34456799999999999998 99999999999999999999988888888888888888788999999999999999999
Q ss_pred CCcEEEEe--------cCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeE----EeecccCCCCCCeeEEE
Q 005352 426 SCHVVDWV--------DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEI----CVHSKKKAPCKRITGFQ 493 (701)
Q Consensus 426 ~~~~~~~~--------~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~----~~~~~~~~~~~~i~~l~ 493 (701)
++...... .|...|++++|+|++++|++++.||.|++||+.+......... ........+...|++++
T Consensus 236 ~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 315 (388)
T d1erja_ 236 TGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVA 315 (388)
T ss_dssp TCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEE
T ss_pred cCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEE
Confidence 88765432 4677899999999999999999999999999987654322111 11112334667899999
Q ss_pred EecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEE------ecCCCEEEEEeCCCcEEEEeCC
Q 005352 494 FLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACF------TSDGKHIVSAGEDSNVYMWNCI 559 (701)
Q Consensus 494 ~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~------s~dg~~l~sgs~Dg~I~iWd~~ 559 (701)
|+| ++.+|++|+.||.|++||+.+.........|...|+++++ +|++.+|+||+.||+|+||+++
T Consensus 316 ~s~-~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 316 TTQ-NDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp ECG-GGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred ECC-CCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence 999 7899999999999999999987776666669999999975 6789999999999999999974
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.2e-33 Score=298.57 Aligned_cols=331 Identities=14% Similarity=0.205 Sum_probs=233.5
Q ss_pred CCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecC
Q 005352 249 HDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTS 328 (701)
Q Consensus 249 H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (701)
+..+|+|++|+|+|++||+|+.||.|+|||+.+++.
T Consensus 6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~-------------------------------------------- 41 (371)
T d1k8kc_ 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW-------------------------------------------- 41 (371)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEE--------------------------------------------
T ss_pred CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCE--------------------------------------------
Confidence 457899999999999999999999999999987642
Q ss_pred CccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeee---cCCCCeEEEEEee
Q 005352 329 ESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVF---PHSNYVTCVHFNP 404 (701)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~---~h~~~V~~l~f~p 404 (701)
..+..+.+|.+.|.+|+|+|++ +|++++.|++|+|||+.++.....+ .|...|++++|+|
T Consensus 42 ----------------~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p 105 (371)
T d1k8kc_ 42 ----------------VQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAP 105 (371)
T ss_dssp ----------------EEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECT
T ss_pred ----------------EEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccccccccccccccccccccccc
Confidence 2345678999999999999998 9999999999999999887655443 3788999999999
Q ss_pred CCCCEEEEEEcCCcEEEEeCCCCcEE-----EEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeE---
Q 005352 405 VDDNYFISGSIDGKVRIWAVLSCHVV-----DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEI--- 476 (701)
Q Consensus 405 ~~~~~l~sgs~dg~v~iwd~~~~~~~-----~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~--- 476 (701)
++++|++++.|+.|++|++...... ....+...|.+++|+|++++|++|+.|+.+++|++...........
T Consensus 106 -~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~ 184 (371)
T d1k8kc_ 106 -NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPW 184 (371)
T ss_dssp -TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTT
T ss_pred -ccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEEEEEeeccCccccccccccc
Confidence 9999999999999999988765422 2234678899999999999999999999999999875432111100
Q ss_pred -------EeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeC
Q 005352 477 -------CVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGE 549 (701)
Q Consensus 477 -------~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~ 549 (701)
........+...|.+++|+| ++++|++++.|+.|++||............|..+|.+++|+|++++|++|+
T Consensus 185 ~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~- 262 (371)
T d1k8kc_ 185 GSKMPFGELMFESSSSCGWVHGVCFSA-NGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGH- 262 (371)
T ss_dssp BSCCCTTCEEEECCCCSSCEEEEEECS-SSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEET-
T ss_pred cccccceeeeeeccCccCcEEEEEeec-ccccccccccCCcceEEeeecccceeeeecccccceeeeecCCCCEEEEEc-
Confidence 01112345677899999999 789999999999999999987777666666889999999999998887655
Q ss_pred CCcEEEEeCCCCCCCCccccccccccccccCCceEE----ecCC--CCCCCCCCCCCccccCCCCCCCccccCCCccccC
Q 005352 550 DSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIA----IPWC--GLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLG 623 (701)
Q Consensus 550 Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a----~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~ 623 (701)
|+.+++|..+........... .............+ ..+. +...............+...+..+++.|......
T Consensus 263 d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~ 341 (371)
T d1k8kc_ 263 DCFPVLFTYDSAAGKLSFGGR-LDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKC 341 (371)
T ss_dssp TSSCEEEEEETTTTEEEECCC-CCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSC
T ss_pred CCceEEEEeeCCCceEEEeee-ecCccccccccccceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcce
Confidence 788777776554321100000 00000000000000 0000 0000000111111122344566666666543444
Q ss_pred ccccccCCCCcccCCCCccC
Q 005352 624 QEYVFESFPKGCATWPEEKL 643 (701)
Q Consensus 624 ~~~~~~s~d~~~~~W~~~~~ 643 (701)
..|++++.|+.+++|+.+.+
T Consensus 342 ~~~~T~g~Dg~v~iW~~~~~ 361 (371)
T d1k8kc_ 342 SQFCTTGMDGGMSIWDVRSL 361 (371)
T ss_dssp SEEEEEETTSEEEEEEHHHH
T ss_pred EEEEEEcCCCeEEEEeCCcC
Confidence 56889999999999997554
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.2e-32 Score=285.76 Aligned_cols=318 Identities=15% Similarity=0.234 Sum_probs=238.4
Q ss_pred ceeccCCCcE-EEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeE
Q 005352 244 QEIQAHDGSI-LTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILK 322 (701)
Q Consensus 244 ~~l~~H~~~I-~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (701)
.+|+||...| +|++| ++++||||+.||+|+|||+.+++
T Consensus 6 ~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~--------------------------------------- 44 (355)
T d1nexb2 6 TTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKK--------------------------------------- 44 (355)
T ss_dssp EEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTE---------------------------------------
T ss_pred EEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCc---------------------------------------
Confidence 3688998885 55554 68899999999999999998764
Q ss_pred EeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCCeEEEEECCCcEEEEECCCCeeeeeec---CCCCeEE
Q 005352 323 SLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP---HSNYVTC 399 (701)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~---h~~~V~~ 399 (701)
.+.++.+|.+.|++++|+|+++|++++.|++|++|++...++..... +...+..
T Consensus 45 -----------------------~~~~l~~H~~~V~~l~~s~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~ 101 (355)
T d1nexb2 45 -----------------------FLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLD 101 (355)
T ss_dssp -----------------------EEEEEECCSSCEEEEEEETTTEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred -----------------------EEEEEECCCCCEEEEEEcCCCEEEEEecccccccccccccccccccccccccccccc
Confidence 34567889999999999998899999999999999999998887765 3334555
Q ss_pred EEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecC----------------------CCcEEEEEEeeCCCeEEEEecC
Q 005352 400 VHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDI----------------------RQIVTAVCYRPDGQGGIVGSMM 457 (701)
Q Consensus 400 l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~----------------------~~~i~~i~~sp~g~~l~~gs~d 457 (701)
..+.+ ++.++++++.|+.|++||+.+......... ........+.++++.++++..|
T Consensus 102 ~~~~~-~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d 180 (355)
T d1nexb2 102 IVEYK-NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYD 180 (355)
T ss_dssp EEEET-TEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETT
T ss_pred ccccc-ccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeeeeccc
Confidence 66777 888999999999999999987643321110 0011223456788999999999
Q ss_pred CcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEE
Q 005352 458 GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACF 537 (701)
Q Consensus 458 g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~ 537 (701)
+.+++||+.+.+.... ...+...+.++.++| .+..+++++.|+.|++||..+.........|...|.++++
T Consensus 181 ~~i~~~d~~~~~~~~~--------~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~ 251 (355)
T d1nexb2 181 NTLIVWDVAQMKCLYI--------LSGHTDRIYSTIYDH-ERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRL 251 (355)
T ss_dssp SCEEEEETTTTEEEEE--------ECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEE
T ss_pred ceeeeeecccccceee--------eeccccccccccccc-cceeeecccccceEEeeecccccccccccccccccccccc
Confidence 9999999998765422 233456788999999 7899999999999999999987777777778999999988
Q ss_pred ecCCCEEEEEeCCCcEEEEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCcc-ccC
Q 005352 538 TSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENL-AFA 616 (701)
Q Consensus 538 s~dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~s 616 (701)
+ +++|++|+.||.|++||+++..... . .....+..+ .++
T Consensus 252 ~--~~~l~~~~~dg~i~iwd~~~~~~~~----------~----------------------------~~~~~~~~~~~~~ 291 (355)
T d1nexb2 252 S--DKFLVSAAADGSIRGWDANDYSRKF----------S----------------------------YHHTNLSAITTFY 291 (355)
T ss_dssp C--SSEEEEECTTSEEEEEETTTCCEEE----------E----------------------------EECTTCCCCCEEE
T ss_pred c--cceeeeeecccccccccccccceec----------c----------------------------cccCCceEEEEEc
Confidence 6 4699999999999999987664210 0 001112222 233
Q ss_pred CCccccCccccccCCCCcccCCCCccCCCCcc-ccccccchhhhhhhhhcccccccccCCCccEEEEecCCCeEeEEe
Q 005352 617 PARFSLGQEYVFESFPKGCATWPEEKLPALSQ-LSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFL 693 (701)
Q Consensus 617 p~~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivTgg~DG~Irvw~ 693 (701)
| ...+++++.|+.+++|+.+....+.. +..| .+.|++++++++ .+|++++.||++++|-
T Consensus 292 ~-----~~~~l~~g~d~~i~vwd~~tg~~~~~~~~~~-----------~~~V~~v~~~~~--~~~~~~s~dg~~~l~~ 351 (355)
T d1nexb2 292 V-----SDNILVSGSENQFNIYNLRSGKLVHANILKD-----------ADQIWSVNFKGK--TLVAAVEKDGQSFLEI 351 (355)
T ss_dssp E-----CSSEEEEEETTEEEEEETTTCCBCCSCTTTT-----------CSEEEEEEEETT--EEEEEEESSSCEEEEE
T ss_pred C-----CCCEEEEEeCCEEEEEECCCCCEEEEEecCC-----------CCCEEEEEEcCC--eEEEEEECCCcEEEEE
Confidence 3 23455566799999999988877643 3334 457888888765 5788999999987763
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.4e-31 Score=276.54 Aligned_cols=290 Identities=18% Similarity=0.320 Sum_probs=235.0
Q ss_pred ceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEE
Q 005352 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (701)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (701)
++|+||+++|++|+|+|++++||||+.||+|+|||+.+++.+..+..+.....++.+.++.. .++.
T Consensus 49 ~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~-------------~l~~- 114 (340)
T d1tbga_ 49 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN-------------YVAC- 114 (340)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSS-------------EEEE-
T ss_pred EEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccce-------------eeee-
Confidence 46889999999999999999999999999999999999998888877766665555544321 1111
Q ss_pred eeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCCeEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEE
Q 005352 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHF 402 (701)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f 402 (701)
...+..+..+..............+.+|...........+..++....+.....|............ +...+....+
T Consensus 115 --~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (340)
T d1tbga_ 115 --GGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSL 192 (340)
T ss_dssp --EETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEE
T ss_pred --ecccceeecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeecc
Confidence 1112222222222222233456678889888888887777789999999999999988877665554 7778899999
Q ss_pred eeCCCCEEEEEEcCCcEEEEeCCCCcEEE-EecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecc
Q 005352 403 NPVDDNYFISGSIDGKVRIWAVLSCHVVD-WVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSK 481 (701)
Q Consensus 403 ~p~~~~~l~sgs~dg~v~iwd~~~~~~~~-~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~ 481 (701)
.+ ...++++++.|+.|++||+++++.+. +..|...|++++|+|++++|++|+.||.|++|++......... .
T Consensus 193 ~~-~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~------~ 265 (340)
T d1tbga_ 193 AP-DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY------S 265 (340)
T ss_dssp CT-TSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE------C
T ss_pred cc-ccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccccccccc------c
Confidence 98 89999999999999999999998875 4568899999999999999999999999999999987654321 2
Q ss_pred cCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEe
Q 005352 482 KKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWN 557 (701)
Q Consensus 482 ~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd 557 (701)
...+...|++++|+| ++.+|++|+.||.|++||+.+.........|...|++++|+|++++|+||+.||.|+|||
T Consensus 266 ~~~~~~~i~~~~~s~-~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 266 HDNIICGITSVSFSK-SGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp CTTCCSCEEEEEECS-SSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred cccccCceEEEEECC-CCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence 344557799999999 789999999999999999987777666666899999999999999999999999999997
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.6e-32 Score=279.84 Aligned_cols=245 Identities=16% Similarity=0.153 Sum_probs=199.0
Q ss_pred ceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEE
Q 005352 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (701)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (701)
+.++||+++|++|+|+|+|++||||+.||+|++||+.+++.+..+
T Consensus 6 ~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~----------------------------------- 50 (299)
T d1nr0a2 6 QVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVF----------------------------------- 50 (299)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECS-----------------------------------
T ss_pred eEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEE-----------------------------------
Confidence 568999999999999999999999999999999999877543221
Q ss_pred eeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCCeEEEEECCCcEEEEECCCCeee----eeecCCCCeEE
Q 005352 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCL----RVFPHSNYVTC 399 (701)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~----~~~~h~~~V~~ 399 (701)
..+|...|++++|+|++.+++++.|+.+++|+....... ....+...+.+
T Consensus 51 --------------------------~~~h~~~v~~v~~~~~g~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (299)
T d1nr0a2 51 --------------------------PDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLG 104 (299)
T ss_dssp --------------------------SCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEE
T ss_pred --------------------------cCCCCCcEEEEEeeccceeecccceeeEEEeccCCccccccccccccccccccc
Confidence 135889999999999998888999999999998654322 12237788999
Q ss_pred EEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEee
Q 005352 400 VHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVH 479 (701)
Q Consensus 400 l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~ 479 (701)
++|+| ++.++++++ ++.+++|+... . ........+.+++|+|++++|++|+.+|.|++||+++.......
T Consensus 105 ~~~s~-~g~~~~~~~-~~~i~~~~~~~--~-~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~----- 174 (299)
T d1nr0a2 105 LAVSA-DGDIAVAAC-YKHIAIYSHGK--L-TEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVK----- 174 (299)
T ss_dssp EEECT-TSSCEEEEE-SSEEEEEETTE--E-EEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEE-----
T ss_pred ccccc-ccccccccc-ccccccccccc--c-cccccccccccccccccccccccccccccccccccccccccccc-----
Confidence 99999 888777665 67899998543 2 22334567899999999999999999999999999877643221
Q ss_pred cccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceee---ecccCCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 005352 480 SKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKY---KGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMW 556 (701)
Q Consensus 480 ~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~---~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iW 556 (701)
...+...|++++|+| ++.+|++++.|+.|++||..+..... ....|...|++++|+|++++|++|+.||.|++|
T Consensus 175 --~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iw 251 (299)
T d1nr0a2 175 --TIVHPAEITSVAFSN-NGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVW 251 (299)
T ss_dssp --EEECSSCEEEEEECT-TSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred --ccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccceEEEcCCCEEEEE
Confidence 122457899999999 78999999999999999987543322 233478899999999999999999999999999
Q ss_pred eCCCCC
Q 005352 557 NCIGHE 562 (701)
Q Consensus 557 d~~~~~ 562 (701)
|+.++.
T Consensus 252 d~~~~~ 257 (299)
T d1nr0a2 252 NMNKPS 257 (299)
T ss_dssp ETTCTT
T ss_pred ECCCCC
Confidence 998775
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=2.3e-32 Score=281.37 Aligned_cols=242 Identities=15% Similarity=0.219 Sum_probs=203.1
Q ss_pred cCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeec
Q 005352 248 AHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRT 327 (701)
Q Consensus 248 ~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (701)
.+.+.+..++++|+|+.||.+. ++.|.+|++.+.
T Consensus 15 ~~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~--------------------------------------------- 48 (311)
T d1nr0a1 15 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSL--------------------------------------------- 48 (311)
T ss_dssp CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCS---------------------------------------------
T ss_pred CCCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCC---------------------------------------------
Confidence 3566777899999999999986 567999999765
Q ss_pred CCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeee--eeec-CCCCeEEEEEe
Q 005352 328 SESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCL--RVFP-HSNYVTCVHFN 403 (701)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~--~~~~-h~~~V~~l~f~ 403 (701)
...+.+.+|...|++++|+|++ +|++|+.||+|+|||+.++... ..+. |...|.+++|+
T Consensus 49 -----------------~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 111 (311)
T d1nr0a1 49 -----------------TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWD 111 (311)
T ss_dssp -----------------SCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEEC
T ss_pred -----------------ceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCcccccccc
Confidence 3445678899999999999999 9999999999999999887654 3343 88999999999
Q ss_pred eCCCCEEEEEEc--CCcEEEEeCCCCcEE-EEecCCCcEEEEEEeeCCCe-EEEEecCCcEEEEECCCCeeeeeeeEEee
Q 005352 404 PVDDNYFISGSI--DGKVRIWAVLSCHVV-DWVDIRQIVTAVCYRPDGQG-GIVGSMMGDCRFYNVSDNHLELDAEICVH 479 (701)
Q Consensus 404 p~~~~~l~sgs~--dg~v~iwd~~~~~~~-~~~~~~~~i~~i~~sp~g~~-l~~gs~dg~v~i~d~~~~~~~~~~~~~~~ 479 (701)
| ++++|++++. +..+++|++.+++.. .+..|...|++++|+|++++ |++|+.||.|++||+++.+....
T Consensus 112 ~-d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~------ 184 (311)
T d1nr0a1 112 S-ESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKST------ 184 (311)
T ss_dssp T-TSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEE------
T ss_pred c-cccccccccccccccccccccccccccccccccccccccccccccceeeecccccccccccccccccccccc------
Confidence 9 9999999885 456999999988766 44567889999999999986 77899999999999998765422
Q ss_pred cccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeee-------cccCCCCeEEEEEecCCCEEEEEeCCCc
Q 005352 480 SKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYK-------GLRRSGNQLSACFTSDGKHIVSAGEDSN 552 (701)
Q Consensus 480 ~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~-------~~~~~~~v~~l~~s~dg~~l~sgs~Dg~ 552 (701)
...+...|+++.|+| ++.++++++.|+.|++||......... ...|...|++++|+|++++|++|+.||.
T Consensus 185 --~~~~~~~i~~v~~~p-~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~ 261 (311)
T d1nr0a1 185 --FGEHTKFVHSVRYNP-DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKT 261 (311)
T ss_dssp --ECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSE
T ss_pred --cccccccccccccCc-cccccccccccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCe
Confidence 334667899999999 789999999999999999875443322 2247789999999999999999999999
Q ss_pred EEEEeCCCCC
Q 005352 553 VYMWNCIGHE 562 (701)
Q Consensus 553 I~iWd~~~~~ 562 (701)
|+|||+++++
T Consensus 262 v~iwd~~t~~ 271 (311)
T d1nr0a1 262 IKIWNVATLK 271 (311)
T ss_dssp EEEEETTTTE
T ss_pred EEEEECCCCc
Confidence 9999998775
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=6.2e-32 Score=275.31 Aligned_cols=281 Identities=22% Similarity=0.336 Sum_probs=239.9
Q ss_pred eeecccCcceeeec--CccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEE
Q 005352 198 CVVDKQGEGERVRL--NEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVR 275 (701)
Q Consensus 198 ~~~~~~~~~~~~~~--~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~ 275 (701)
.+..|.+.+.++.+ ++..+++|+.|+.|+||++.... ..+.+.+|.+.|.+++|+|++.++++++.++.+.
T Consensus 12 ~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~-------~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~ 84 (317)
T d1vyhc1 12 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD-------FERTLKGHTDSVQDISFDHSGKLLASCSADMTIK 84 (317)
T ss_dssp EEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCC-------CCEEECCCSSCEEEEEECTTSSEEEEEETTSCCC
T ss_pred EEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC-------EEEEEeCCCCcEEEEeeecccccccccccccccc
Confidence 44568888877765 45678889999999999976432 2346788999999999999999999999999999
Q ss_pred EEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCcc
Q 005352 276 LWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSG 355 (701)
Q Consensus 276 iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 355 (701)
+|+....+. ...+.+|..
T Consensus 85 ~~~~~~~~~--------------------------------------------------------------~~~~~~~~~ 102 (317)
T d1vyhc1 85 LWDFQGFEC--------------------------------------------------------------IRTMHGHDH 102 (317)
T ss_dssp EEETTSSCE--------------------------------------------------------------EECCCCCSS
T ss_pred ccccccccc--------------------------------------------------------------ccccccccc
Confidence 999766532 223456888
Q ss_pred CeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEE-E
Q 005352 356 EILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD-W 432 (701)
Q Consensus 356 ~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~-~ 432 (701)
.+.++.|++++ .+++++.|+.+++||+.+++.+..+. |...+.+++|+| ++++|++++.|+.|++|++.+++... +
T Consensus 103 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~~~~~~~ 181 (317)
T d1vyhc1 103 NVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVATKECKAEL 181 (317)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred cceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeeccc-CCCEEEEEeCCCeEEEEeeccceeeEEE
Confidence 99999999998 99999999999999999999888876 889999999999 99999999999999999999988774 4
Q ss_pred ecCCCcEEEEEEeeCC--------------------CeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEE
Q 005352 433 VDIRQIVTAVCYRPDG--------------------QGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGF 492 (701)
Q Consensus 433 ~~~~~~i~~i~~sp~g--------------------~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l 492 (701)
..+...+.+++|+|++ ..+++++.|+.|++|++++++.... ...|...|.++
T Consensus 182 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~--------~~~~~~~v~~~ 253 (317)
T d1vyhc1 182 REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMT--------LVGHDNWVRGV 253 (317)
T ss_dssp CCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEE--------EECCSSCEEEE
T ss_pred ecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEE--------EeCCCCCEEEE
Confidence 5677889999988753 4688999999999999998875432 22356789999
Q ss_pred EEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEe
Q 005352 493 QFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWN 557 (701)
Q Consensus 493 ~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd 557 (701)
+++| ++.+|++++.||.|++||+.+.........|...|++++|+|++++|+||+.||+|+|||
T Consensus 254 ~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 254 LFHS-GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp EECS-SSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred EECC-CCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence 9999 789999999999999999987666555556899999999999999999999999999997
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=2.9e-32 Score=287.89 Aligned_cols=280 Identities=15% Similarity=0.227 Sum_probs=216.6
Q ss_pred eeeecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeee
Q 005352 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLT 286 (701)
Q Consensus 207 ~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~ 286 (701)
.++++++..+++++.++.|+||+...... .....+++|.++|++|+|+|++++||+|+.|++|+|||+.++...
T Consensus 13 ~~~s~dg~~la~~~~~~~i~iw~~~~~~~-----~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~- 86 (371)
T d1k8kc_ 13 HAWNKDRTQIAICPNNHEVHIYEKSGNKW-----VQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWK- 86 (371)
T ss_dssp EEECTTSSEEEEECSSSEEEEEEEETTEE-----EEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEE-
T ss_pred EEECCCCCEEEEEeCCCEEEEEECCCCCE-----EEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccc-
Confidence 34556667888899999999999754322 223567899999999999999999999999999999999876422
Q ss_pred eecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC
Q 005352 287 EVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN 366 (701)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~ 366 (701)
+...+.+|...|.+++|+|++
T Consensus 87 -----------------------------------------------------------~~~~~~~~~~~v~~i~~~p~~ 107 (371)
T d1k8kc_ 87 -----------------------------------------------------------PTLVILRINRAARCVRWAPNE 107 (371)
T ss_dssp -----------------------------------------------------------EEEECCCCSSCEEEEEECTTS
T ss_pred -----------------------------------------------------------ccccccccccccccccccccc
Confidence 223445788999999999999
Q ss_pred -eEEEEECCCcEEEEECCCCeeeeee-----cCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCc------------
Q 005352 367 -YLLSASIDKTVRLWRVGNDHCLRVF-----PHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCH------------ 428 (701)
Q Consensus 367 -~l~s~s~dg~I~iWd~~~~~~~~~~-----~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~------------ 428 (701)
.|++++.|++|++|++......... .|...|.+++|+| ++.+|++|+.|++|++||+....
T Consensus 108 ~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p-~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~ 186 (371)
T d1k8kc_ 108 KKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHP-NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGS 186 (371)
T ss_dssp SEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECT-TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBS
T ss_pred ccceeecccCcceeeeeecccccccccccccccccccccccccc-cccceeccccCcEEEEEeeccCccccccccccccc
Confidence 9999999999999998766433222 2788999999999 99999999999999999986432
Q ss_pred -------EEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCE
Q 005352 429 -------VVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSK 501 (701)
Q Consensus 429 -------~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~ 501 (701)
......|...|.+++|+|+++.|++++.|+.|++||+........ ...+..+|.+++|+| ++.+
T Consensus 187 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~--------~~~~~~~v~s~~fs~-d~~~ 257 (371)
T d1k8kc_ 187 KMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVAT--------LASETLPLLAVTFIT-ESSL 257 (371)
T ss_dssp CCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEE--------EECSSCCEEEEEEEE-TTEE
T ss_pred cccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceee--------eecccccceeeeecC-CCCE
Confidence 123345778899999999999999999999999999987765332 123457799999999 5665
Q ss_pred EEEEECCCcEEEEeCC--ccceee---------------------------------------ecccCCCCeEEEEEecC
Q 005352 502 VMVSCADSQVRILQGP--NVIGKY---------------------------------------KGLRRSGNQLSACFTSD 540 (701)
Q Consensus 502 l~~~s~dg~I~iwd~~--~~~~~~---------------------------------------~~~~~~~~v~~l~~s~d 540 (701)
|+ ++.|+.+++|... .....+ ....|...|+++++.+.
T Consensus 258 la-~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~ 336 (371)
T d1k8kc_ 258 VA-AGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSG 336 (371)
T ss_dssp EE-EETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEES
T ss_pred EE-EEcCCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEeccccccceecccccCCEEEEEEeCC
Confidence 55 5557777665421 100000 00127788999999885
Q ss_pred C----CEEEEEeCCCcEEEEeCCCCC
Q 005352 541 G----KHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 541 g----~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
+ ..|+|++.||.|+|||+++.+
T Consensus 337 ~~~~~~~~~T~g~Dg~v~iW~~~~~~ 362 (371)
T d1k8kc_ 337 GKAKCSQFCTTGMDGGMSIWDVRSLE 362 (371)
T ss_dssp TTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred CCcceEEEEEEcCCCeEEEEeCCcCh
Confidence 5 468999999999999986643
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.8e-30 Score=267.67 Aligned_cols=326 Identities=17% Similarity=0.266 Sum_probs=242.3
Q ss_pred ccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeecccccee
Q 005352 241 YKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISI 320 (701)
Q Consensus 241 ~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (701)
...+.|+||++.|.+ +++++|++||||+.||+|+|||+.+++
T Consensus 7 ~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~------------------------------------- 48 (342)
T d2ovrb2 7 KSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGK------------------------------------- 48 (342)
T ss_dssp CCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCC-------------------------------------
T ss_pred CcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCC-------------------------------------
Confidence 344678999999876 477789999999999999999998764
Q ss_pred eEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCCeEEEEECCCcEEEEECCCCeeeeeec-CCCCeEE
Q 005352 321 LKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTC 399 (701)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~ 399 (701)
+++.+.+|...|.+++|+++ +|++++.|+++++|+........... +...+..
T Consensus 49 -------------------------~~~~~~~h~~~V~~v~~~~~-~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (342)
T d2ovrb2 49 -------------------------CLRTLVGHTGGVWSSQMRDN-IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRC 102 (342)
T ss_dssp -------------------------EEEECCCCSSCEEEEEEETT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred -------------------------EEEEEeCCCCCEEEEEeCCC-ccccceecccccccccccccceecccccceeEee
Confidence 34566789999999999875 99999999999999999887776665 4444555
Q ss_pred EEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEee
Q 005352 400 VHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVH 479 (701)
Q Consensus 400 l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~ 479 (701)
... ....++.+..|+.+.+|+..+++............. .+.+....+++++.++.+++||+........
T Consensus 103 ~~~---~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~------ 172 (342)
T d2ovrb2 103 MHL---HEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVR-CVQYDGRRVVSGAYDFMVKVWDPETETCLHT------ 172 (342)
T ss_dssp EEE---ETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEE-EEEECSSCEEEEETTSCEEEEEGGGTEEEEE------
T ss_pred eec---ccccccccccceeEEEeecccccceeeeecccccce-eeccccceeeeecCCCeEEEeecccceeeEE------
Confidence 444 457888999999999999999887765554443333 3456677899999999999999987765322
Q ss_pred cccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 005352 480 SKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCI 559 (701)
Q Consensus 480 ~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~ 559 (701)
...+...+.. +.+ ++..+++++.|+.|++||+...........|...+.+++++ +++|++++.||.|++|++.
T Consensus 173 --~~~~~~~~~~--~~~-~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~d~~i~iwd~~ 245 (342)
T d2ovrb2 173 --LQGHTNRVYS--LQF-DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIK 245 (342)
T ss_dssp --ECCCSSCEEE--EEE-CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETT
T ss_pred --EcCccccccc--ccC-CCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecC--CCEEEEEcCCCEEEEEecc
Confidence 1223333444 444 57899999999999999998777666666688888887775 4699999999999999988
Q ss_pred CCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCCcccCCC
Q 005352 560 GHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWP 639 (701)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~ 639 (701)
..+... .+... ......+..+.++| ..+++++.|+.+++|+
T Consensus 246 ~~~~~~--------~~~~~-------------------------~~~~~~~~~~~~~~------~~~~s~s~Dg~i~iwd 286 (342)
T d2ovrb2 246 TGQCLQ--------TLQGP-------------------------NKHQSAVTCLQFNK------NFVITSSDDGTVKLWD 286 (342)
T ss_dssp TCCEEE--------EECST-------------------------TSCSSCEEEEEECS------SEEEEEETTSEEEEEE
T ss_pred cccccc--------ccccc-------------------------ceeeeceeecccCC------CeeEEEcCCCEEEEEE
Confidence 765211 01000 00011122223333 4678899999999999
Q ss_pred CccCCCCccccccccchhhhhhhhhcccccccccCCCccEEEEecCCCe----EeEEe
Q 005352 640 EEKLPALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGR----IRSFL 693 (701)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivTgg~DG~----Irvw~ 693 (701)
.+..+.+..+.... ...+.+.|++++++++ +.+|++|+.||+ |++|+
T Consensus 287 ~~tg~~i~~~~~~~------~~~~~~~v~~v~~s~~-~~~la~g~~dGt~~~~l~~~D 337 (342)
T d2ovrb2 287 LKTGEFIRNLVTLE------SGGSGGVVWRIRASNT-KLVCAVGSRNGTEETKLLVLD 337 (342)
T ss_dssp TTTCCEEEEEEECT------TGGGTCEEEEEEECSS-EEEEEEECSSSSSCCEEEEEE
T ss_pred CCCCCEEEEEeccc------CCCCCCCEEEEEECCC-CCEEEEEeCCCCCeeEEEEEe
Confidence 99888776653221 1122457888999998 999999999995 88886
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.98 E-value=1.1e-30 Score=269.98 Aligned_cols=288 Identities=15% Similarity=0.324 Sum_probs=233.2
Q ss_pred CCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEE
Q 005352 345 KPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIW 422 (701)
Q Consensus 345 ~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iw 422 (701)
+..++|+||.+.|++|+|+|++ +|+||+.||+|+|||+.+++.+..+. |...|.+++|+| +++++++|+.|+.+++|
T Consensus 46 ~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~-~~~~l~~~~~d~~i~~~ 124 (340)
T d1tbga_ 46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP-SGNYVACGGLDNICSIY 124 (340)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECT-TSSEEEEEETTCCEEEE
T ss_pred eeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeec-cceeeeeecccceeecc
Confidence 5567899999999999999999 99999999999999999999998887 899999999999 99999999999999999
Q ss_pred eCCCCc----EEE-EecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecC
Q 005352 423 AVLSCH----VVD-WVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQ 497 (701)
Q Consensus 423 d~~~~~----~~~-~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~ 497 (701)
+..... ... ...+...... .....+..++....+.....+.......... .......+....+.+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~- 194 (340)
T d1tbga_ 125 NLKTREGNVRVSRELAGHTGYLSC-CRFLDDNQIVTSSGDTTCALWDIETGQQTTT--------FTGHTGDVMSLSLAP- 194 (340)
T ss_dssp ESSSSCSCCCEEEEECCCSSCEEE-EEEEETTEEEEEETTTEEEEEETTTTEEEEE--------EECCSSCEEEEEECT-
T ss_pred cccccccccccceecccccccccc-ccccccccccccccccccccccccccccccc--------ccccceeEeeecccc-
Confidence 987643 222 3334444444 4444556788888899999998877654322 223345677888888
Q ss_pred CCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCCCCcccccccccccc
Q 005352 498 DSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLER 577 (701)
Q Consensus 498 ~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~ 577 (701)
...++++++.|+.|++||+.+.........|...|++++|+|++++|++|+.||.|++|++....... .+.
T Consensus 195 ~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~--------~~~- 265 (340)
T d1tbga_ 195 DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELM--------TYS- 265 (340)
T ss_dssp TSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE--------EEC-
T ss_pred ccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccccccc--------ccc-
Confidence 78899999999999999998877766666689999999999999999999999999999988765210 000
Q ss_pred ccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCCcccCCCCccCCCCccccccccchh
Q 005352 578 FTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLSSASALHK 657 (701)
Q Consensus 578 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~~~~~~~ 657 (701)
.......+..++|+|+ +..+++++.|+.+++|+......+..+.+|
T Consensus 266 -------------------------~~~~~~~i~~~~~s~~----~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H----- 311 (340)
T d1tbga_ 266 -------------------------HDNIICGITSVSFSKS----GRLLLAGYDDFNCNVWDALKADRAGVLAGH----- 311 (340)
T ss_dssp -------------------------CTTCCSCEEEEEECSS----SCEEEEEETTSCEEEEETTTCCEEEEECCC-----
T ss_pred -------------------------cccccCceEEEEECCC----CCEEEEEECCCEEEEEECCCCcEEEEEcCC-----
Confidence 0011223556778886 678889999999999999998888888777
Q ss_pred hhhhhhhcccccccccCCCccEEEEecCCCeEeEEe
Q 005352 658 SQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFL 693 (701)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~g~~ivTgg~DG~Irvw~ 693 (701)
.+.|.+++++++ +.+|+|||.||.||+|+
T Consensus 312 ------~~~V~~l~~s~d-~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 312 ------DNRVSCLGVTDD-GMAVATGSWDSFLKIWN 340 (340)
T ss_dssp ------SSCEEEEEECTT-SSCEEEEETTSCEEEEC
T ss_pred ------CCCEEEEEEeCC-CCEEEEEccCCEEEEeC
Confidence 467888999988 99999999999999995
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.97 E-value=2.5e-29 Score=255.98 Aligned_cols=283 Identities=16% Similarity=0.165 Sum_probs=213.9
Q ss_pred ecccCcceeeec--CccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEE
Q 005352 200 VDKQGEGERVRL--NEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLW 277 (701)
Q Consensus 200 ~~~~~~~~~~~~--~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iW 277 (701)
..|...+.++++ ++..+++|+.|+.|+||++...... .. ...+|.+.|++++|+|+|++ ++++.|+.+++|
T Consensus 9 ~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~-~~-----~~~~h~~~v~~v~~~~~g~~-~~~~~d~~v~~~ 81 (299)
T d1nr0a2 9 YGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISN-RV-----FPDVHATMITGIKTTSKGDL-FTVSWDDHLKVV 81 (299)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE-EC-----SSCSCSSCEEEEEECTTSCE-EEEETTTEEEEE
T ss_pred CCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEE-EE-----EcCCCCCcEEEEEeecccee-ecccceeeEEEe
Confidence 357777776654 4567889999999999998643211 11 12469999999999999974 566779999999
Q ss_pred EeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCe
Q 005352 278 QVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEI 357 (701)
Q Consensus 278 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I 357 (701)
+....... ........|...+
T Consensus 82 ~~~~~~~~-----------------------------------------------------------~~~~~~~~~~~~~ 102 (299)
T d1nr0a2 82 PAGGSGVD-----------------------------------------------------------SSKAVANKLSSQP 102 (299)
T ss_dssp CSSSSSSC-----------------------------------------------------------TTSCCEEECSSCE
T ss_pred ccCCcccc-----------------------------------------------------------ccccccccccccc
Confidence 97653210 0111123467788
Q ss_pred EEEEEecCCeEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEE--EEecC
Q 005352 358 LDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV--DWVDI 435 (701)
Q Consensus 358 ~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~--~~~~~ 435 (701)
.+++|++++.+++++.++.+++|+... .........+.+++|+| ++++|++|+.||.|++||+.+++.. ....|
T Consensus 103 ~~~~~s~~g~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~~~s~-~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~ 178 (299)
T d1nr0a2 103 LGLAVSADGDIAVAACYKHIAIYSHGK---LTEVPISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASVSEVKTIVH 178 (299)
T ss_dssp EEEEECTTSSCEEEEESSEEEEEETTE---EEEEECSSCEEEEEECT-TSCEEEEEETTSEEEEEEEETTEEEEEEEEEC
T ss_pred ccccccccccccccccccccccccccc---ccccccccccccccccc-cccccccccccccccccccccccccccccccc
Confidence 999999999555556677999998543 22334556789999999 9999999999999999999887654 45578
Q ss_pred CCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEe
Q 005352 436 RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQ 515 (701)
Q Consensus 436 ~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd 515 (701)
...|++++|+|++++|++++.++.|++||+.++.... .......|...|++++|+| ++.+|++++.|+.|++||
T Consensus 179 ~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~-----~~~~~~~h~~~v~~l~~s~-~~~~l~sgs~dg~i~iwd 252 (299)
T d1nr0a2 179 PAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELA-----HTNSWTFHTAKVACVSWSP-DNVRLATGSLDNSVIVWN 252 (299)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEES-----CCCCCCCCSSCEEEEEECT-TSSEEEEEETTSCEEEEE
T ss_pred ccccccccccccccccccccccccccccccccccccc-----ccccccccccccccccccc-cccceEEEcCCCEEEEEE
Confidence 8999999999999999999999999999998765432 1122345678899999999 789999999999999999
Q ss_pred CCccc--eeeecccCC-CCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 005352 516 GPNVI--GKYKGLRRS-GNQLSACFTSDGKHIVSAGEDSNVYMWNCI 559 (701)
Q Consensus 516 ~~~~~--~~~~~~~~~-~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~ 559 (701)
+.... .......|. ..+.++ +++++++|++|+.|+.|++||+.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 253 MNKPSDHPIIIKGAHAMSSVNSV-IWLNETTIVSAGQDSNIKFWNVP 298 (299)
T ss_dssp TTCTTSCCEEETTSSTTSCEEEE-EEEETTEEEEEETTSCEEEEECC
T ss_pred CCCCCcceEEEecCCCCCcEEEE-EECCCCEEEEEeCCCEEEEEecc
Confidence 87543 223333333 455555 45677899999999999999973
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=2.9e-28 Score=252.39 Aligned_cols=334 Identities=13% Similarity=0.188 Sum_probs=228.6
Q ss_pred eecccCcc-eeeecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEE
Q 005352 199 VVDKQGEG-ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLW 277 (701)
Q Consensus 199 ~~~~~~~~-~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iW 277 (701)
+..|...+ .+++++++.+++|+.|+.|+||+..... ..+.+.+|+++|++|+|+|+ .+|++|+.|++|++|
T Consensus 8 L~GH~~~vitc~~~~~~~l~tgs~Dg~i~vWd~~~~~-------~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw 79 (355)
T d1nexb2 8 LRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKK-------FLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVW 79 (355)
T ss_dssp EECCSSSCEEEEEEETTEEEEEETTTEEEEEETTTTE-------EEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEE
T ss_pred ECCcCCCcEEEEEECCCEEEEEeCCCeEEEEECCCCc-------EEEEEECCCCCEEEEEEcCC-CEEEEEecccccccc
Confidence 44576665 6789999999999999999999975432 23568899999999999986 589999999999999
Q ss_pred EeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEE-cCC-----ccccccCCCeEEEc
Q 005352 278 QVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVV-FPP-----KVFRILEKPLHEFH 351 (701)
Q Consensus 278 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~ 351 (701)
++...+........................ ..+.....+...+............. ... ..............
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (355)
T d1nexb2 80 DIKKGCCTHVFEGHNSTVRCLDIVEYKNIK-YIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLR 158 (355)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEEEEETTEE-EEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEE
T ss_pred cccccccccccccccccccccccccccccc-eeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeee
Confidence 999887766555444332222222111111 11111111211221111110000000 000 00000112234455
Q ss_pred CCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcE
Q 005352 352 GHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHV 429 (701)
Q Consensus 352 ~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~ 429 (701)
.|...+... .+++ +++++..|+.|++||+.+++.+..+. +...+.++.|+| ++.++++++.|+.|++||+.++..
T Consensus 159 ~~~~~v~~~--~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~i~d~~~~~~ 235 (355)
T d1nexb2 159 GHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDH-ERKRCISASMDTTIRIWDLENGEL 235 (355)
T ss_dssp CCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTCCE
T ss_pred ecccccccc--ccccceeeeecccceeeeeecccccceeeeeccccccccccccc-cceeeecccccceEEeeecccccc
Confidence 666666654 4455 89999999999999999999888776 778899999999 999999999999999999999887
Q ss_pred E-EEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECC
Q 005352 430 V-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD 508 (701)
Q Consensus 430 ~-~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~d 508 (701)
+ ....|...|.+++++ +++|++|+.||.|++||+++...... . +...+..+.+.+.++.++++ +.|
T Consensus 236 ~~~~~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~----~------~~~~~~~~~~~~~~~~~l~~-g~d 302 (355)
T d1nexb2 236 MYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFS----Y------HHTNLSAITTFYVSDNILVS-GSE 302 (355)
T ss_dssp EEEECCCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCEEEE----E------ECTTCCCCCEEEECSSEEEE-EET
T ss_pred ccccccccccccccccc--cceeeeeecccccccccccccceecc----c------ccCCceEEEEEcCCCCEEEE-EeC
Confidence 7 455678889999886 46999999999999999988754321 1 12334444444435665555 458
Q ss_pred CcEEEEeCCccceee-ecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 005352 509 SQVRILQGPNVIGKY-KGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNC 558 (701)
Q Consensus 509 g~I~iwd~~~~~~~~-~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~ 558 (701)
+.|+|||+++..... ....|...|.+++|+|+ .++++++.||.++||.+
T Consensus 303 ~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~~ 352 (355)
T d1nexb2 303 NQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLEIL 352 (355)
T ss_dssp TEEEEEETTTCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESSSCEEEEEE
T ss_pred CEEEEEECCCCCEEEEEecCCCCCEEEEEEcCC-eEEEEEECCCcEEEEEE
Confidence 999999998765543 23458889999999987 47888999999777653
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=1.8e-28 Score=253.49 Aligned_cols=286 Identities=17% Similarity=0.204 Sum_probs=204.1
Q ss_pred eeecCccccccccccc-eEEEEEccCccchhhhcccCceeccC-CCcEEEEEEcc--CCCEEEEEeCCCcEEEEEeecCe
Q 005352 208 RVRLNEEDAMFCSKVQ-RVKVYHCKKRSKELSALYKGQEIQAH-DGSILTMKFSP--DGQYLASAGDDGVVRLWQVVEDE 283 (701)
Q Consensus 208 ~~~~~~~~~~~~~~d~-~v~vw~~~~~~~~~~~~~~~~~l~~H-~~~I~~l~fsp--dg~~Lasgs~Dg~I~iWd~~~~~ 283 (701)
++.+.++.+++++.+. .|+.|+... ... .....+.+| ...|++++|+| +|++||+|+.||+|+|||+..++
T Consensus 24 ~~~~~~~~la~~~~~~~~i~~~~~~~--~~~---~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~ 98 (325)
T d1pgua1 24 SYDPTTNAIAYPCGKSAFVRCLDDGD--SKV---PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDK 98 (325)
T ss_dssp EEETTTTEEEEEETTEEEEEECCSSC--CSS---CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEG
T ss_pred EECCCCCEEEEEeCCCEEEEEEeCCC--CCc---cceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCc
Confidence 4455666666654332 344554322 111 122346667 46899999998 57899999999999999997764
Q ss_pred eeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEe
Q 005352 284 RLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS 363 (701)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s 363 (701)
....... .....+..|.++|.+++|+
T Consensus 99 ~~~~~~~------------------------------------------------------~~~~~~~~~~~~v~~v~~s 124 (325)
T d1pgua1 99 ESNSVEV------------------------------------------------------NVKSEFQVLAGPISDISWD 124 (325)
T ss_dssp GGTEEEE------------------------------------------------------EEEEEEECCSSCEEEEEEC
T ss_pred ceeeeec------------------------------------------------------ccccccccccCcEEEEEEC
Confidence 3221110 1123456788999999999
Q ss_pred cCC-eEEEEE--CCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEe----cC
Q 005352 364 KNN-YLLSAS--IDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV----DI 435 (701)
Q Consensus 364 ~~~-~l~s~s--~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~----~~ 435 (701)
+++ +|++++ .++.+++|+..+++++..+. |...|++++|+|....++++++.|+.|++||+...+..... .+
T Consensus 125 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~ 204 (325)
T d1pgua1 125 FEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQ 204 (325)
T ss_dssp TTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCT
T ss_pred CCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCC
Confidence 999 776665 47789999999999988887 89999999999944456888999999999999887765332 45
Q ss_pred CCcEEEEEEeeC-CCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEE
Q 005352 436 RQIVTAVCYRPD-GQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRIL 514 (701)
Q Consensus 436 ~~~i~~i~~sp~-g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iw 514 (701)
...|++++|+|+ +.+|++++.||.|++||+++++.... +..........+.++.+ | ++.+|++++.|+.|+||
T Consensus 205 ~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~----l~~~~~~v~~~~~s~~~-~-dg~~l~s~s~D~~i~iw 278 (325)
T d1pgua1 205 GSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKY----IEDDQEPVQGGIFALSW-L-DSQKFATVGADATIRVW 278 (325)
T ss_dssp TCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEE----CCBTTBCCCSCEEEEEE-S-SSSEEEEEETTSEEEEE
T ss_pred CCccEEeeeccccceeccccccccceeeeeecccccccc----ccccccccccceeeeec-c-CCCEEEEEeCCCeEEEE
Confidence 677999999996 68899999999999999998775432 11112222233344444 3 57899999999999999
Q ss_pred eCCccc--eeeecccCCCCeEEEEEecC-CCEEEEEeCCCcEEEEeC
Q 005352 515 QGPNVI--GKYKGLRRSGNQLSACFTSD-GKHIVSAGEDSNVYMWNC 558 (701)
Q Consensus 515 d~~~~~--~~~~~~~~~~~v~~l~~s~d-g~~l~sgs~Dg~I~iWd~ 558 (701)
|+.+.. ..+..+.+...+..+++.+. +.+|++++.||.|++||+
T Consensus 279 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 279 DVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp ETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred ECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence 998544 44445444444444444433 348999999999999996
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=8.8e-27 Score=239.70 Aligned_cols=320 Identities=13% Similarity=0.186 Sum_probs=223.5
Q ss_pred ceeeecccCcc-eeeecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcE
Q 005352 196 LACVVDKQGEG-ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVV 274 (701)
Q Consensus 196 ~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I 274 (701)
...+..|.+.+ .+++++++.+++|+.|+.|+||++.... ..+.+.+|.+.|++++|+|+ +|++|+.|+.+
T Consensus 9 ~~~l~GH~~~V~s~~~~~g~~l~sgs~Dg~i~vWd~~~~~-------~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~ 79 (342)
T d2ovrb2 9 PKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGK-------CLRTLVGHTGGVWSSQMRDN--IIISGSTDRTL 79 (342)
T ss_dssp CEEEECSTTSCEEEEEEETTEEEEEETTSCEEEEETTTCC-------EEEECCCCSSCEEEEEEETT--EEEEEETTSCE
T ss_pred CEEECCcCCceEEEEEECCCEEEEEeCCCeEEEEECCCCC-------EEEEEeCCCCCEEEEEeCCC--ccccceecccc
Confidence 33445677766 5689999999999999999999975432 22467889999999999875 99999999999
Q ss_pred EEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCc
Q 005352 275 RLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHS 354 (701)
Q Consensus 275 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 354 (701)
++|+......................... ... ....+..+..+.... .+....+..+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~--------------~~~~d~~i~~~~~~~----~~~~~~~~~~~ 137 (342)
T d2ovrb2 80 KVWNAETGECIHTLYGHTSTVRCMHLHEK----RVV--------------SGSRDATLRVWDIET----GQCLHVLMGHV 137 (342)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEEETT----EEE--------------EEETTSEEEEEESSS----CCEEEEEECCS
T ss_pred cccccccccceecccccceeEeeeecccc----ccc--------------ccccceeEEEeeccc----ccceeeeeccc
Confidence 99999887655444332221111111000 000 000111111111110 12222333333
Q ss_pred cCeEEEEEecCCeEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEE-E
Q 005352 355 GEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD-W 432 (701)
Q Consensus 355 ~~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~-~ 432 (701)
... .........+++++.|+.|++||....+++..+. |...+.++. + ++.+|++++.||.|++||++.++.+. .
T Consensus 138 ~~~-~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~--~-~~~~l~s~~~dg~i~~~d~~~~~~~~~~ 213 (342)
T d2ovrb2 138 AAV-RCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQ--F-DGIHVVSGSLDTSIRVWDVETGNCIHTL 213 (342)
T ss_dssp SCE-EEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEE--E-CSSEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred ccc-eeeccccceeeeecCCCeEEEeecccceeeEEEcCccccccccc--C-CCCEEEEEeCCCeEEEeecccceeeeEe
Confidence 322 2222333489999999999999999999888876 666655554 4 67899999999999999999988774 4
Q ss_pred ecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEE
Q 005352 433 VDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVR 512 (701)
Q Consensus 433 ~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~ 512 (701)
..|...+.+++++ +++|++++.||.|++||+...+.... ......+...+.++.++ +.++++++.||.|+
T Consensus 214 ~~~~~~v~~~~~~--~~~l~s~s~d~~i~iwd~~~~~~~~~-----~~~~~~~~~~~~~~~~~---~~~~~s~s~Dg~i~ 283 (342)
T d2ovrb2 214 TGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQT-----LQGPNKHQSAVTCLQFN---KNFVITSSDDGTVK 283 (342)
T ss_dssp CCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEE-----ECSTTSCSSCEEEEEEC---SSEEEEEETTSEEE
T ss_pred cccccceeEEecC--CCEEEEEcCCCEEEEEeccccccccc-----ccccceeeeceeecccC---CCeeEEEcCCCEEE
Confidence 4567778877665 56999999999999999988765321 12234455667777775 47999999999999
Q ss_pred EEeCCccceeeec-----ccCCCCeEEEEEecCCCEEEEEeCCCc----EEEEeCCC
Q 005352 513 ILQGPNVIGKYKG-----LRRSGNQLSACFTSDGKHIVSAGEDSN----VYMWNCIG 560 (701)
Q Consensus 513 iwd~~~~~~~~~~-----~~~~~~v~~l~~s~dg~~l~sgs~Dg~----I~iWd~~~ 560 (701)
+||+.+....... ..|...|++++|+|++.+|++|+.||+ |++||++.
T Consensus 284 iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~ 340 (342)
T d2ovrb2 284 LWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 340 (342)
T ss_dssp EEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred EEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence 9999865443322 246778999999999999999999985 99999874
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=5e-28 Score=250.20 Aligned_cols=211 Identities=14% Similarity=0.171 Sum_probs=167.8
Q ss_pred CeEEEcCCc-cCeEEEEEecC--C-eEEEEECCCcEEEEECCCCeeeee--------e-cCCCCeEEEEEeeCCCCEEEE
Q 005352 346 PLHEFHGHS-GEILDLSWSKN--N-YLLSASIDKTVRLWRVGNDHCLRV--------F-PHSNYVTCVHFNPVDDNYFIS 412 (701)
Q Consensus 346 ~~~~~~~h~-~~I~~l~~s~~--~-~l~s~s~dg~I~iWd~~~~~~~~~--------~-~h~~~V~~l~f~p~~~~~l~s 412 (701)
.+..+.+|. ..|++++|+|+ + +|++|+.||+|+|||+..++.... + .|.++|.+++|++ ++.+|++
T Consensus 54 ~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~ 132 (325)
T d1pgua1 54 PVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF-EGRRLCV 132 (325)
T ss_dssp SEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECT-TSSEEEE
T ss_pred ceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECC-CCCccce
Confidence 345667774 67999999984 4 899999999999999876543222 1 2788999999999 8998887
Q ss_pred EEc--CCcEEEEeCCCCcEEE-EecCCCcEEEEEEeeCCCe-EEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCC
Q 005352 413 GSI--DGKVRIWAVLSCHVVD-WVDIRQIVTAVCYRPDGQG-GIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKR 488 (701)
Q Consensus 413 gs~--dg~v~iwd~~~~~~~~-~~~~~~~i~~i~~sp~g~~-l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 488 (701)
++. ++.+++|+..+++.+. ...|...|++++|+|++.. +++++.|+.+++||+...+.... ......+...
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~-----~~~~~~~~~~ 207 (325)
T d1pgua1 133 VGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSAS-----DRTHHKQGSF 207 (325)
T ss_dssp EECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEE-----ECSSSCTTCC
T ss_pred eeccccceEEEEeecccccceeeeecccccccccccccccceEEEeeccccccccccccccccee-----cccccCCCCc
Confidence 764 6789999999888774 4558899999999999876 67788999999999987654321 1223456778
Q ss_pred eeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEe---cCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 489 ITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFT---SDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 489 i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s---~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
|.+++|+|+.+.++++++.|+.|++||+++.........|...+..+.|+ |+|++|++++.|+.|+|||+.+++
T Consensus 208 v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~ 284 (325)
T d1pgua1 208 VRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSK 284 (325)
T ss_dssp EEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTE
T ss_pred cEEeeeccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCC
Confidence 99999999778999999999999999998766555554466665555544 789999999999999999988765
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=2.2e-27 Score=240.06 Aligned_cols=229 Identities=15% Similarity=0.174 Sum_probs=183.1
Q ss_pred ceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEE
Q 005352 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (701)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (701)
+.|+||.++|++|+|+| |+||+.||+|++||+.++.
T Consensus 7 ~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~~---------------------------------------- 42 (287)
T d1pgua2 7 KTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMH---------------------------------------- 42 (287)
T ss_dssp EEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEEE----------------------------------------
T ss_pred EEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCCC----------------------------------------
Confidence 56889999999999987 9999999999999975432
Q ss_pred eeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCCeEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEe
Q 005352 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFN 403 (701)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~ 403 (701)
.+|...|.++++++++.+++++.|++|++|++... .....+.+++++
T Consensus 43 ---------------------------~~h~~~V~~~~~~~~~~~~s~s~D~~v~~w~~~~~------~~~~~~~~~~~~ 89 (287)
T d1pgua2 43 ---------------------------QDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKH------EFGSQPKVASAN 89 (287)
T ss_dssp ---------------------------CCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEE------ECSSCEEEEEEC
T ss_pred ---------------------------CCCCCCEEEEEecCCCeEEEEeecccccccccccc------ccccceeeeeec
Confidence 46889999999998888999999999999987542 234567888888
Q ss_pred eCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecCC-cEEEEECCCCeeeeeeeEEeeccc
Q 005352 404 PVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMG-DCRFYNVSDNHLELDAEICVHSKK 482 (701)
Q Consensus 404 p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg-~v~i~d~~~~~~~~~~~~~~~~~~ 482 (701)
+ ++..++ .+.++.+.+|+..+++.+........+. +++|++..+++++.++ .+++|++....... ...
T Consensus 90 ~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~-------~~~ 158 (287)
T d1pgua2 90 N-DGFTAV-LTNDDDLLILQSFTGDIIKSVRLNSPGS--AVSLSQNYVAVGLEEGNTIQVFKLSDLEVSF-------DLK 158 (287)
T ss_dssp S-SSEEEE-EETTSEEEEEETTTCCEEEEEECSSCEE--EEEECSSEEEEEETTTSCEEEEETTEEEEEE-------ECS
T ss_pred c-CCceEE-Eeecccceeeeccceeeeeeccccceee--eeeccCcceeeeccccceeeeeeccccceee-------eee
Confidence 7 655555 4567789999999998887777666554 5677888888888875 69999987544322 123
Q ss_pred CCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeee-cccCCCCeEEEEEecC----------CCEEEEEeCCC
Q 005352 483 KAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYK-GLRRSGNQLSACFTSD----------GKHIVSAGEDS 551 (701)
Q Consensus 483 ~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~-~~~~~~~v~~l~~s~d----------g~~l~sgs~Dg 551 (701)
..+...+++++|+| ++.+|++++.|+.|++||..+...... ...|...|.+++|+|. +.+|++|+.|+
T Consensus 159 ~~~~~~v~~~~~s~-~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~ 237 (287)
T d1pgua2 159 TPLRAKPSYISISP-SETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDT 237 (287)
T ss_dssp SCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTS
T ss_pred eccCCceeEEEecc-CccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCC
Confidence 34557799999999 789999999999999999987655433 3458889999999875 46899999999
Q ss_pred cEEEEeCCCC
Q 005352 552 NVYMWNCIGH 561 (701)
Q Consensus 552 ~I~iWd~~~~ 561 (701)
.|+||++.++
T Consensus 238 ~i~iw~~~~~ 247 (287)
T d1pgua2 238 NIFIYSVKRP 247 (287)
T ss_dssp CEEEEESSCT
T ss_pred eEEEEECCCC
Confidence 9999997654
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=1.6e-26 Score=232.05 Aligned_cols=235 Identities=19% Similarity=0.276 Sum_probs=183.4
Q ss_pred eccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEee
Q 005352 246 IQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLR 325 (701)
Q Consensus 246 l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (701)
...|...|+|++| ||++||||+.||+|+|||+.+++
T Consensus 11 ~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~------------------------------------------ 46 (293)
T d1p22a2 11 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLE------------------------------------------ 46 (293)
T ss_dssp CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCC------------------------------------------
T ss_pred cCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCc------------------------------------------
Confidence 4568889998765 79999999999999999997763
Q ss_pred ecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCCeEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeC
Q 005352 326 RTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPV 405 (701)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~ 405 (701)
++..+.+|.+.|++++|.+ .+|++|+.|+.|++|++..+.............. .+.+
T Consensus 47 --------------------~~~~l~~H~~~V~~v~~~~-~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~- 103 (293)
T d1p22a2 47 --------------------CKRILTGHTGSVLCLQYDE-RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVL-HLRF- 103 (293)
T ss_dssp --------------------EEEEECCCSSCEEEEECCS-SEEEEEETTSCEEEEESSSCCEEEEECCCCSCEE-EEEC-
T ss_pred --------------------EEEEEecCCCCEeeeeccc-ceeecccccccccccccccccccccccccccccc-cccc-
Confidence 4566788999999998732 2999999999999999999988877764444333 3444
Q ss_pred CCCEEEEEEcCCcEEEEeCCCCcEE----EEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecc
Q 005352 406 DDNYFISGSIDGKVRIWAVLSCHVV----DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSK 481 (701)
Q Consensus 406 ~~~~l~sgs~dg~v~iwd~~~~~~~----~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~ 481 (701)
....++++..++.+++|++...... ....+...+..+.+. ...+++++.|+.+++||+++.+.....
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s~d~~i~~~d~~~~~~~~~~------- 174 (293)
T d1p22a2 104 NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWNTSTCEFVRTL------- 174 (293)
T ss_dssp CTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTTCCEEEEE-------
T ss_pred cccceeecccccceeEeeccccccccccccccccccccccceec--ccccccccCCCceeeecCCCCcEEEEE-------
Confidence 6778999999999999999876532 334566777776665 457889999999999999987754321
Q ss_pred cCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 005352 482 KKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGH 561 (701)
Q Consensus 482 ~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~ 561 (701)
..+...+..+.+. +..+++++.|+.|++||..+.........+...+.. +++++.+|++|+.||.|++||+...
T Consensus 175 -~~~~~~v~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~ 248 (293)
T d1p22a2 175 -NGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC--IRFDNKRIVSGAYDGKIKVWDLVAA 248 (293)
T ss_dssp -ECCSSCEEEEEEE---TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE--EECCSSEEEEEETTSCEEEEEHHHH
T ss_pred -cccccccccccCC---CCeEEEecCCCEEEEEecccceeeeeecccceeeee--ccccceEEEEEcCCCEEEEEECCCC
Confidence 2334556666664 478999999999999999877766666556666654 5678899999999999999997665
Q ss_pred C
Q 005352 562 E 562 (701)
Q Consensus 562 ~ 562 (701)
.
T Consensus 249 ~ 249 (293)
T d1p22a2 249 L 249 (293)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=2e-27 Score=244.12 Aligned_cols=254 Identities=15% Similarity=0.135 Sum_probs=194.2
Q ss_pred ceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEE
Q 005352 244 QEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKS 323 (701)
Q Consensus 244 ~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (701)
+.+++|+..|++|+|+|++++||+|+.||+|+|||+.+.....
T Consensus 5 ~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~------------------------------------- 47 (342)
T d1yfqa_ 5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNV------------------------------------- 47 (342)
T ss_dssp ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEE-------------------------------------
T ss_pred EcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcce-------------------------------------
Confidence 4578899999999999999999999999999999998753211
Q ss_pred eeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC--eEEEEECCCcEEEEECCCCeeeeeec--CCCCeEE
Q 005352 324 LRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFP--HSNYVTC 399 (701)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~--~l~s~s~dg~I~iWd~~~~~~~~~~~--h~~~V~~ 399 (701)
.+....+|...|.+++|+|++ +|++|+.|++|++|++.......... +......
T Consensus 48 ----------------------~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~ 105 (342)
T d1yfqa_ 48 ----------------------DLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGIC 105 (342)
T ss_dssp ----------------------EEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEE
T ss_pred ----------------------EEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeecccccccccccccccccccc
Confidence 112234699999999999875 89999999999999999887766665 3344455
Q ss_pred EEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEE----Ee---cCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeee
Q 005352 400 VHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD----WV---DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLEL 472 (701)
Q Consensus 400 l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~----~~---~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~ 472 (701)
..+.+ +...+++++.++.+++||++...... .. ........+.+.+.+..+++++.|+.|++|++.......
T Consensus 106 ~~~~~-~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~ 184 (342)
T d1yfqa_ 106 RICKY-GDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDN 184 (342)
T ss_dssp EEEEE-TTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCC
T ss_pred ccccc-ccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccc
Confidence 55666 88999999999999999986543221 11 122345567788899999999999999999998765432
Q ss_pred eeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCcccee--------e-------ecccCCCCeEEEEE
Q 005352 473 DAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGK--------Y-------KGLRRSGNQLSACF 537 (701)
Q Consensus 473 ~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~--------~-------~~~~~~~~v~~l~~ 537 (701)
.... .......+....+.+.++..+++++.||.+.+|+....... + ....|...+++++|
T Consensus 185 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 259 (342)
T d1yfqa_ 185 GTIE-----ESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEF 259 (342)
T ss_dssp CEEE-----ECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEE
T ss_pred eeee-----ecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEe
Confidence 2111 12233456777777778889999999999999986532111 1 11235668899999
Q ss_pred ecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 538 TSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 538 s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
+|++++|+||+.||.|++||+++++
T Consensus 260 sp~~~~lasg~~Dg~v~vWD~~~~~ 284 (342)
T d1yfqa_ 260 SPRHKFLYTAGSDGIISCWNLQTRK 284 (342)
T ss_dssp CTTTCCEEEEETTSCEEEEETTTTE
T ss_pred cCCccEEEEECCCCEEEEEECCCCc
Confidence 9999999999999999999998765
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=1.4e-26 Score=233.92 Aligned_cols=267 Identities=13% Similarity=0.169 Sum_probs=213.3
Q ss_pred eeeecccCcceeeecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEE
Q 005352 197 ACVVDKQGEGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRL 276 (701)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~i 276 (701)
..+..|...+.++.++. +++|+.|++|++|+... ..++|...|.++.|++++ .+++++.|++|++
T Consensus 7 ~~l~gH~~~I~~l~~s~--l~sgs~Dg~v~~Wd~~~------------~~~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~ 71 (287)
T d1pgua2 7 KTISGHNKGITALTVNP--LISGSYDGRIMEWSSSS------------MHQDHSNLIVSLDNSKAQ-EYSSISWDDTLKV 71 (287)
T ss_dssp EEECCCSSCEEEEETTT--TEEEETTSCEEETTTTE------------EECCCCSCEEEEECCSTT-CCEEEETTTEEEE
T ss_pred EEECCCCCceEEEEECc--EEEEeCCCeEEEEECCC------------CCCCCCCCEEEEEecCCC-eEEEEeecccccc
Confidence 34456888899988875 89999999999997542 235799999999999765 6799999999999
Q ss_pred EEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccC
Q 005352 277 WQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGE 356 (701)
Q Consensus 277 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 356 (701)
|++...+ +...
T Consensus 72 w~~~~~~---------------------------------------------------------------------~~~~ 82 (287)
T d1pgua2 72 NGITKHE---------------------------------------------------------------------FGSQ 82 (287)
T ss_dssp TTEEEEE---------------------------------------------------------------------CSSC
T ss_pred ccccccc---------------------------------------------------------------------cccc
Confidence 9976532 1234
Q ss_pred eEEEEEecCCeEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCC-cEEEEeCCCCcEEEEe--
Q 005352 357 ILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDG-KVRIWAVLSCHVVDWV-- 433 (701)
Q Consensus 357 I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg-~v~iwd~~~~~~~~~~-- 433 (701)
+..+++++++.++..+.++.+.+|+..+++.+..+.+...+.+ ++| ++..+++++.++ .+++|++...+.....
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~ 159 (287)
T d1pgua2 83 PKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSA--VSL-SQNYVAVGLEEGNTIQVFKLSDLEVSFDLKT 159 (287)
T ss_dssp EEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEE--EEE-CSSEEEEEETTTSCEEEEETTEEEEEEECSS
T ss_pred eeeeeeccCCceEEEeecccceeeeccceeeeeeccccceeee--eec-cCcceeeeccccceeeeeeccccceeeeeee
Confidence 5677888888666677788899999999999998887666554 556 677888887765 6999999766554332
Q ss_pred cCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecC---------CCCEEEE
Q 005352 434 DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQ---------DSSKVMV 504 (701)
Q Consensus 434 ~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~---------~~~~l~~ 504 (701)
.+...+++++|+|++.+|++|+.+|.|++||+.+..... .....|...|.+++|+|. ++.++++
T Consensus 160 ~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~-------~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~s 232 (287)
T d1pgua2 160 PLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKT-------SRWAFRTSKINAISWKPAEKGANEEEIEEDLVAT 232 (287)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE-------CCSCCCSSCEEEEEECCCC------CCSCCEEEE
T ss_pred ccCCceeEEEeccCccccccccccccccceeeccccccc-------ccccccccccceeeecccccccccccCCCCeeEe
Confidence 466789999999999999999999999999999876432 224557788999999873 4578999
Q ss_pred EECCCcEEEEeCCccceee-ecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC
Q 005352 505 SCADSQVRILQGPNVIGKY-KGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNC 558 (701)
Q Consensus 505 ~s~dg~I~iwd~~~~~~~~-~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~ 558 (701)
|+.|+.|+|||+.+....+ ....|...|++++|+|++ .|+|++.|+.|++|++
T Consensus 233 gs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 233 GSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp EETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred ecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence 9999999999987644333 334589999999999986 6899999999999986
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=4.5e-27 Score=249.73 Aligned_cols=256 Identities=14% Similarity=0.199 Sum_probs=181.7
Q ss_pred eeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEe
Q 005352 245 EIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSL 324 (701)
Q Consensus 245 ~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (701)
..++|.+.|++|++++ ++|+||+.|++|+|||..+.+.....
T Consensus 9 ~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~------------------------------------ 50 (393)
T d1sq9a_ 9 AGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPK------------------------------------ 50 (393)
T ss_dssp ESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGG------------------------------------
T ss_pred cCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCccc------------------------------------
Confidence 4578999999999864 69999999999999997654311000
Q ss_pred eecCCccEEEcCCccccccCCCeEEEcCCccCe------EEEEEecCC--eEEEEECCCcEEEEECCCCeeeeee-----
Q 005352 325 RRTSESACVVFPPKVFRILEKPLHEFHGHSGEI------LDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVF----- 391 (701)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I------~~l~~s~~~--~l~s~s~dg~I~iWd~~~~~~~~~~----- 391 (701)
........|...+ ..+...... ++++++.||.|++|++........+
T Consensus 51 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~ 110 (393)
T d1sq9a_ 51 --------------------DKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKL 110 (393)
T ss_dssp --------------------GGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEE
T ss_pred --------------------ceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeCCCcEEEEEccCCCceeeeecccc
Confidence 0001111222222 222222222 6789999999999997644322111
Q ss_pred ------cCCCCeEEEEEeeCC----CCEEEEEEcCCcEEEEeCCCCc------------EE-------EEecCCCcEEEE
Q 005352 392 ------PHSNYVTCVHFNPVD----DNYFISGSIDGKVRIWAVLSCH------------VV-------DWVDIRQIVTAV 442 (701)
Q Consensus 392 ------~h~~~V~~l~f~p~~----~~~l~sgs~dg~v~iwd~~~~~------------~~-------~~~~~~~~i~~i 442 (701)
.+...+..++|.+.. ..++++++.||.+++|++.... .. ....+...++++
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 190 (393)
T d1sq9a_ 111 DLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSV 190 (393)
T ss_dssp CCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEE
T ss_pred ceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEE
Confidence 145667888887721 4688999999999999984321 11 111234568899
Q ss_pred EEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCc---EEEEeCCcc
Q 005352 443 CYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQ---VRILQGPNV 519 (701)
Q Consensus 443 ~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~---I~iwd~~~~ 519 (701)
+|+|++ +|++|+.||.|++||+.+++..... ........|...|.+++|+| ++.+|++++.|+. |++||+...
T Consensus 191 ~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~--~~~~~l~~h~~~V~~l~~sp-dg~~l~sgs~D~t~~~i~lwd~~~g 266 (393)
T d1sq9a_ 191 DISERG-LIATGFNNGTVQISELSTLRPLYNF--ESQHSMINNSNSIRSVKFSP-QGSLLAIAHDSNSFGCITLYETEFG 266 (393)
T ss_dssp EECTTS-EEEEECTTSEEEEEETTTTEEEEEE--ECCC---CCCCCEEEEEECS-STTEEEEEEEETTEEEEEEEETTTC
T ss_pred EECCCC-EEEEEeCCCcEEEEeeccccccccc--ccccccccccceEEEccccc-ccceeeeecCCCCcceeeecccccc
Confidence 999997 8899999999999999988764332 22333456788999999999 7899999999874 899998754
Q ss_pred ceeeec-------------ccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 520 IGKYKG-------------LRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 520 ~~~~~~-------------~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
...... .+|...|++++|+|++++|+||+.|++|+|||+.+++
T Consensus 267 ~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~ 322 (393)
T d1sq9a_ 267 ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKE 322 (393)
T ss_dssp CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE
T ss_pred eeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCC
Confidence 332221 3588999999999999999999999999999999886
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=2e-25 Score=223.94 Aligned_cols=273 Identities=17% Similarity=0.334 Sum_probs=203.7
Q ss_pred cceeeecccCcceeeecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcE
Q 005352 195 SLACVVDKQGEGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVV 274 (701)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I 274 (701)
.+.|...+...+.+++++++.+++|+.|+.|+||+..... ..+.+++|+++|++|+| ++++|+||+.|+.|
T Consensus 7 ~i~~~~~~~~~V~c~~~d~~~l~sgs~Dg~i~vWd~~~~~-------~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i 77 (293)
T d1p22a2 7 RIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLE-------CKRILTGHTGSVLCLQY--DERVIITGSSDSTV 77 (293)
T ss_dssp CEECCCSSCCCEEEEECCSSEEEEEESSSCEEEEESSSCC-------EEEEECCCSSCEEEEEC--CSSEEEEEETTSCE
T ss_pred EEeccCCCCCCEEEEEEcCCEEEEEeCCCeEEEEECCCCc-------EEEEEecCCCCEeeeec--ccceeecccccccc
Confidence 4455556667788999999999999999999999975432 22467889999999987 67899999999999
Q ss_pred EEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCc
Q 005352 275 RLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHS 354 (701)
Q Consensus 275 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 354 (701)
++|++..+...... ..+.
T Consensus 78 ~~~~~~~~~~~~~~--------------------------------------------------------------~~~~ 95 (293)
T d1p22a2 78 RVWDVNTGEMLNTL--------------------------------------------------------------IHHC 95 (293)
T ss_dssp EEEESSSCCEEEEE--------------------------------------------------------------CCCC
T ss_pred cccccccccccccc--------------------------------------------------------------cccc
Confidence 99999876533221 1111
Q ss_pred cCeEEEEEecCCeEEEEECCCcEEEEECCCCeeeeee----cCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEE
Q 005352 355 GEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVF----PHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVV 430 (701)
Q Consensus 355 ~~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~----~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~ 430 (701)
... .......+.++++..++.+++|+..+....... .|...|.++.+.+ ..+++++.|+.|++||+++++.+
T Consensus 96 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~s~d~~i~~~d~~~~~~~ 171 (293)
T d1p22a2 96 EAV-LHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD---KYIVSASGDRTIKVWNTSTCEFV 171 (293)
T ss_dssp SCE-EEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTTCCEE
T ss_pred ccc-ccccccccceeecccccceeEeeccccccccccccccccccccccceecc---cccccccCCCceeeecCCCCcEE
Confidence 111 122233348999999999999999876543322 3778888887754 68889999999999999999877
Q ss_pred E-EecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCC
Q 005352 431 D-WVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADS 509 (701)
Q Consensus 431 ~-~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg 509 (701)
. ...+...+..+.++ +..+++++.||.|++||+++...... ...+...+.. +.+ ++.+|++++.||
T Consensus 172 ~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~--------~~~~~~~v~~--~~~-~~~~l~sg~~dg 238 (293)
T d1p22a2 172 RTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRV--------LEGHEELVRC--IRF-DNKRIVSGAYDG 238 (293)
T ss_dssp EEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEE--------ECCCSSCEEE--EEC-CSSEEEEEETTS
T ss_pred EEEcccccccccccCC--CCeEEEecCCCEEEEEecccceeeee--------ecccceeeee--ccc-cceEEEEEcCCC
Confidence 4 44566677776664 56899999999999999998765432 1223344543 344 678999999999
Q ss_pred cEEEEeCCcc---------ceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEe
Q 005352 510 QVRILQGPNV---------IGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWN 557 (701)
Q Consensus 510 ~I~iwd~~~~---------~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd 557 (701)
.|++||+... ........|...|++++| ++.+|+||+.||+|+|||
T Consensus 239 ~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~--d~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 239 KIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD 293 (293)
T ss_dssp CEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC
T ss_pred EEEEEECCCCccccccCCceeeEEecCCCCCEEEEEE--cCCEEEEEecCCEEEEeC
Confidence 9999996421 122233458889999998 467899999999999997
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=3.2e-25 Score=235.22 Aligned_cols=296 Identities=12% Similarity=0.121 Sum_probs=204.4
Q ss_pred eeeecccCcceeeecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEc------c-CCCEEEEEe
Q 005352 197 ACVVDKQGEGERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFS------P-DGQYLASAG 269 (701)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fs------p-dg~~Lasgs 269 (701)
.+..-|.+++.++...++.+++++.|+.|+||+........... .......|...+..+.+. . ++.++++++
T Consensus 8 ~~~~~H~~~I~~v~~~~~~l~S~S~D~~iriWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 86 (393)
T d1sq9a_ 8 NAGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKD-KSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTS 86 (393)
T ss_dssp EESSCSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGG-GEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred ecCCcccCccEEEEEeCCEEEEEECCCeEEEEECCCCCCCcccc-eeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEe
Confidence 34446888899999999999999999999999975443222211 112233455554433331 1 345788999
Q ss_pred CCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEE
Q 005352 270 DDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHE 349 (701)
Q Consensus 270 ~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (701)
.||.|++|++............. .....
T Consensus 87 ~dg~v~~w~~~~~~~~~~~~~~~----------------------------------------------------~~~~~ 114 (393)
T d1sq9a_ 87 FSGDLLFYRITREDETKKVIFEK----------------------------------------------------LDLLD 114 (393)
T ss_dssp TTSCEEEEEEEECTTTCCEEEEE----------------------------------------------------ECCSC
T ss_pred CCCcEEEEEccCCCceeeeeccc----------------------------------------------------cceee
Confidence 99999999987653211110000 00000
Q ss_pred EcCCccCeEEEEEecC-----C-eEEEEECCCcEEEEECCCCe---------------eeeee----cCCCCeEEEEEee
Q 005352 350 FHGHSGEILDLSWSKN-----N-YLLSASIDKTVRLWRVGNDH---------------CLRVF----PHSNYVTCVHFNP 404 (701)
Q Consensus 350 ~~~h~~~I~~l~~s~~-----~-~l~s~s~dg~I~iWd~~~~~---------------~~~~~----~h~~~V~~l~f~p 404 (701)
...+...+..++|.++ + ++++++.||+|++|++.... ..... .+...+++++|+|
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~ 194 (393)
T d1sq9a_ 115 SDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE 194 (393)
T ss_dssp TTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT
T ss_pred eccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECC
Confidence 1234556777777764 2 78999999999999974321 00111 1566799999998
Q ss_pred CCCCEEEEEEcCCcEEEEeCCCCcEEEE-------ecCCCcEEEEEEeeCCCeEEEEecCCc---EEEEECCCCeeeeee
Q 005352 405 VDDNYFISGSIDGKVRIWAVLSCHVVDW-------VDIRQIVTAVCYRPDGQGGIVGSMMGD---CRFYNVSDNHLELDA 474 (701)
Q Consensus 405 ~~~~~l~sgs~dg~v~iwd~~~~~~~~~-------~~~~~~i~~i~~sp~g~~l~~gs~dg~---v~i~d~~~~~~~~~~ 474 (701)
++ +|++|+.||+|+|||+.+++.+.. ..|..+|++++|+|+|++|++|+.|+. |++||+.+++.....
T Consensus 195 -dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l 272 (393)
T d1sq9a_ 195 -RG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSL 272 (393)
T ss_dssp -TS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEE
T ss_pred -CC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeee
Confidence 65 899999999999999999876632 357789999999999999999999875 899999988765433
Q ss_pred eE-----EeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeE----EEEEecCCCEEE
Q 005352 475 EI-----CVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQL----SACFTSDGKHIV 545 (701)
Q Consensus 475 ~~-----~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~----~l~~s~dg~~l~ 545 (701)
.. ........|...|++++|+| ++++|++++.|++|+|||+.+.........|...|. .++|+|++..++
T Consensus 273 ~~~~~~~~~~~~~~gH~~~V~~l~fsp-d~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~ 351 (393)
T d1sq9a_ 273 SVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLA 351 (393)
T ss_dssp CBC--------CCBSBSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCS
T ss_pred ccccccccceeeeecccCceeeeccCC-CCCeeEEECCCCEEEEEECCCCCEEEEECCcCCcccCCccEEEECCCCCEEE
Confidence 21 11122345788999999999 789999999999999999987666555555655443 466777776665
Q ss_pred EEe
Q 005352 546 SAG 548 (701)
Q Consensus 546 sgs 548 (701)
+++
T Consensus 352 ~~~ 354 (393)
T d1sq9a_ 352 EPG 354 (393)
T ss_dssp SCC
T ss_pred Ecc
Confidence 443
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=8.4e-26 Score=231.76 Aligned_cols=312 Identities=10% Similarity=0.039 Sum_probs=218.0
Q ss_pred CeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCee----eeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEE
Q 005352 346 PLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHC----LRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVR 420 (701)
Q Consensus 346 ~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~----~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~ 420 (701)
.++..++|.+.|++|+|+|++ +|++|+.||+|+|||+.++.. ...+.|..+|++++|+|.++.+|++|+.||.|+
T Consensus 3 ~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~ 82 (342)
T d1yfqa_ 3 IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEIL 82 (342)
T ss_dssp EEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred eEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEccccccee
Confidence 345567999999999999999 999999999999999976543 344469999999999994566899999999999
Q ss_pred EEeCCCCcEEEEec--CCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCC
Q 005352 421 IWAVLSCHVVDWVD--IRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQD 498 (701)
Q Consensus 421 iwd~~~~~~~~~~~--~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~ 498 (701)
+|++.......... +........+.++...+++++.++.+++||++............. ..........+.+.+ .
T Consensus 83 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~ 159 (342)
T d1yfqa_ 83 KVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLN--SNNTKVKNKIFTMDT-N 159 (342)
T ss_dssp EECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESC--SSSSSSCCCEEEEEE-C
T ss_pred eeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccc--cccccceeeeeeeec-c
Confidence 99998876554333 334455666778889999999999999999875433222111111 122223344556666 6
Q ss_pred CCEEEEEECCCcEEEEeCCccceee---ecccCCCCeEEEEEe-cCCCEEEEEeCCCcEEEEeCCCCCCCCccccccccc
Q 005352 499 SSKVMVSCADSQVRILQGPNVIGKY---KGLRRSGNQLSACFT-SDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRS 574 (701)
Q Consensus 499 ~~~l~~~s~dg~I~iwd~~~~~~~~---~~~~~~~~v~~l~~s-~dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~ 574 (701)
+..+++++.|+.|++||+....... ........+.+..+. .++..+++++.||.+.+|++.............
T Consensus 160 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~--- 236 (342)
T d1yfqa_ 160 SSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRF--- 236 (342)
T ss_dssp SSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCE---
T ss_pred CCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccc---
Confidence 7899999999999999987433221 122234445555554 567899999999999999988765322111000
Q ss_pred cccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCCcccCCCCccCCCCcccccccc
Q 005352 575 LERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLSSASA 654 (701)
Q Consensus 575 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~~~~ 654 (701)
....+. ...........+..++|+|+ +..|++++.||.+++|+.+....+.++..+
T Consensus 237 ---------~~~~~~---------~~~~~~~~~~~v~~l~~sp~----~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~-- 292 (342)
T d1yfqa_ 237 ---------AFRCHR---------LNLKDTNLAYPVNSIEFSPR----HKFLYTAGSDGIISCWNLQTRKKIKNFAKF-- 292 (342)
T ss_dssp ---------EEECCC---------CCTTCCSSCCCEEEEEECTT----TCCEEEEETTSCEEEEETTTTEEEEECCCC--
T ss_pred ---------eeeeee---------eccCCCcccccceeEEecCC----ccEEEEECCCCEEEEEECCCCcEEEEecCC--
Confidence 000000 00111122334567889997 678999999999999999888777666433
Q ss_pred chhhhhhhhhcccccccccCCCccEEEEecCCCeEeEEeecCCC
Q 005352 655 LHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFLNYGLP 698 (701)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~g~~ivTgg~DG~Irvw~~~g~p 698 (701)
.....++++++ |.+|++|+.|+.+++|..++-+
T Consensus 293 ----------~~~~~~~~s~~-~~~l~~a~sdd~~~~~~~~~~~ 325 (342)
T d1yfqa_ 293 ----------NEDSVVKIACS-DNILCLATSDDTFKTNAAIDQT 325 (342)
T ss_dssp ----------SSSEEEEEEEC-SSEEEEEEECTHHHHCSSSCTT
T ss_pred ----------CCCEEEEEEeC-CCEEEEEEcCCcEEEeeeeCCC
Confidence 12334566777 8899999999999999876654
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.93 E-value=2.7e-25 Score=231.24 Aligned_cols=280 Identities=8% Similarity=0.019 Sum_probs=209.6
Q ss_pred eeeec-CccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCC--cEEEEEeecCe
Q 005352 207 ERVRL-NEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDG--VVRLWQVVEDE 283 (701)
Q Consensus 207 ~~~~~-~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg--~I~iWd~~~~~ 283 (701)
.++++ +++.++++ ..+.|.||+...... . . .+|.+.|.+++|+|||++|++++.+. .|++||+.+++
T Consensus 8 ~~fSP~dG~~~a~~-~~g~v~v~d~~~~~~--~------~-~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~ 77 (360)
T d1k32a3 8 EDFSPLDGDLIAFV-SRGQAFIQDVSGTYV--L------K-VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGK 77 (360)
T ss_dssp EEEEECGGGCEEEE-ETTEEEEECTTSSBE--E------E-CSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCC
T ss_pred ccccCCCCCEEEEE-ECCeEEEEECCCCcE--E------E-ccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCc
Confidence 56888 55666555 567999998754321 1 1 25999999999999999999877654 79999987753
Q ss_pred eeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEe
Q 005352 284 RLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWS 363 (701)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s 363 (701)
...+..|...|.+++|+
T Consensus 78 ---------------------------------------------------------------~~~~~~~~~~v~~~~~s 94 (360)
T d1k32a3 78 ---------------------------------------------------------------AEKFEENLGNVFAMGVD 94 (360)
T ss_dssp ---------------------------------------------------------------EEECCCCCCSEEEEEEC
T ss_pred ---------------------------------------------------------------EEEeeCCCceEEeeeec
Confidence 23445788999999999
Q ss_pred cCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEE----------cCCcEEEEeCCCCcEEE
Q 005352 364 KNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGS----------IDGKVRIWAVLSCHVVD 431 (701)
Q Consensus 364 ~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs----------~dg~v~iwd~~~~~~~~ 431 (701)
|++ +|++++.++.+++|++.++++...+. |...+.+++|+| ++++|+.+. .++.+++||+.+++...
T Consensus 95 pdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~ 173 (360)
T d1k32a3 95 RNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFA 173 (360)
T ss_dssp TTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEE
T ss_pred ccccccceeccccccccccccccceeeeeecccccccchhhcc-ceeeeeeeccccccceeeccccceeeeccccCceee
Confidence 999 99999999999999999999888776 778899999999 999998654 34569999999999888
Q ss_pred EecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeee-----EEeecc-------------------------
Q 005352 432 WVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAE-----ICVHSK------------------------- 481 (701)
Q Consensus 432 ~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~-----~~~~~~------------------------- 481 (701)
...+...+..++|+|+|+.|++++.++.+.+|+........... +..+..
T Consensus 174 ~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 253 (360)
T d1k32a3 174 ATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMY 253 (360)
T ss_dssp CSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGG
T ss_pred ecccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccc
Confidence 88888899999999999999999999999999976543321110 000000
Q ss_pred -----cCCCCCCeeEEEEecC------------CCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEE
Q 005352 482 -----KKAPCKRITGFQFLPQ------------DSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHI 544 (701)
Q Consensus 482 -----~~~~~~~i~~l~~~p~------------~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l 544 (701)
..........+...++ ...++++++.++.|++||+.+.... .+...|.+++|+|||++|
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~----~~~~~v~~~~~SpDG~~l 329 (360)
T d1k32a3 254 KRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT----EVKNNLTDLRLSADRKTV 329 (360)
T ss_dssp GGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEE----EEEEEEEEEEECTTSCEE
T ss_pred cceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEE----EecCCcCEEEECCCCCEE
Confidence 0001112223333321 0112344556788999998764332 234568999999999999
Q ss_pred EEEeCCCcEEEEeCCCCCCC
Q 005352 545 VSAGEDSNVYMWNCIGHEEP 564 (701)
Q Consensus 545 ~sgs~Dg~I~iWd~~~~~~~ 564 (701)
++++.||.|++|+++.++..
T Consensus 330 ~~~~~Dg~i~v~d~~~~~~~ 349 (360)
T d1k32a3 330 MVRKDDGKIYTFPLEKPEDE 349 (360)
T ss_dssp EEEETTSCEEEEESSCTTSC
T ss_pred EEEECCCeEEEEECCCCCcc
Confidence 99999999999999988753
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.91 E-value=2.7e-24 Score=223.56 Aligned_cols=310 Identities=10% Similarity=-0.005 Sum_probs=214.2
Q ss_pred EEEEcc-CCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEE
Q 005352 255 TMKFSP-DGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACV 333 (701)
Q Consensus 255 ~l~fsp-dg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (701)
...||| ||+++|+++. |.|.+||+.++...
T Consensus 7 ~~~fSP~dG~~~a~~~~-g~v~v~d~~~~~~~------------------------------------------------ 37 (360)
T d1k32a3 7 AEDFSPLDGDLIAFVSR-GQAFIQDVSGTYVL------------------------------------------------ 37 (360)
T ss_dssp EEEEEECGGGCEEEEET-TEEEEECTTSSBEE------------------------------------------------
T ss_pred cccccCCCCCEEEEEEC-CeEEEEECCCCcEE------------------------------------------------
Confidence 467999 9999999875 79999998765321
Q ss_pred EcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCC--cEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEE
Q 005352 334 VFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDK--TVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYF 410 (701)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg--~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l 410 (701)
. .+|...|.+++|+|++ +|++++.+. .|++||+.+++......|...|.+++|+| ++++|
T Consensus 38 ---------------~-~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~~~~~v~~~~~sp-dg~~l 100 (360)
T d1k32a3 38 ---------------K-VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDR-NGKFA 100 (360)
T ss_dssp ---------------E-CSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECT-TSSEE
T ss_pred ---------------E-ccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEeeCCCceEEeeeecc-ccccc
Confidence 1 2588899999999999 777666543 79999999999888888999999999999 99999
Q ss_pred EEEEcCCcEEEEeCCCCcEEEEe-cCCCcEEEEEEeeCCCeEEEEe----------cCCcEEEEECCCCeeeeeeeEEee
Q 005352 411 ISGSIDGKVRIWAVLSCHVVDWV-DIRQIVTAVCYRPDGQGGIVGS----------MMGDCRFYNVSDNHLELDAEICVH 479 (701)
Q Consensus 411 ~sgs~dg~v~iwd~~~~~~~~~~-~~~~~i~~i~~sp~g~~l~~gs----------~dg~v~i~d~~~~~~~~~~~~~~~ 479 (701)
++++.++.+++|++.+++..... .+...+.+++|+|+|++|+.+. .++.+++|++.+++...
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~------- 173 (360)
T d1k32a3 101 VVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFA------- 173 (360)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEE-------
T ss_pred ceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceee-------
Confidence 99999999999999998877544 4667889999999999998654 34568999998876432
Q ss_pred cccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeec-------ccCCCCeEEEEEecCCCEEEEEeCCCc
Q 005352 480 SKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKG-------LRRSGNQLSACFTSDGKHIVSAGEDSN 552 (701)
Q Consensus 480 ~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~-------~~~~~~v~~l~~s~dg~~l~sgs~Dg~ 552 (701)
...+...+..+.|+| +++.|++++.++.+++|+.......+.. ..+...+..+.|++++..++++..+..
T Consensus 174 --~~~~~~~~~~~~~sp-dg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 250 (360)
T d1k32a3 174 --ATTENSHDYAPAFDA-DSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLN 250 (360)
T ss_dssp --CSCSSSBEEEEEECT-TSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCT
T ss_pred --ecccccccccccccC-CCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeec
Confidence 223446678899999 7899999999999999997643322211 112233333445555544443332211
Q ss_pred ---EEEEeC--CCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCcccc
Q 005352 553 ---VYMWNC--IGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYV 627 (701)
Q Consensus 553 ---I~iWd~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~ 627 (701)
.++|.+ ..+. ...+. ........+.+.+.. .....++
T Consensus 251 ~~~~~~~~~~~~~~~--------------------~~~~~-----------------~~~~~~~~~~~~~~~-~~~~~~~ 292 (360)
T d1k32a3 251 DMYKRSSPINVDPGD--------------------YRMII-----------------PLESSILIYSVPVHG-EFAAYYQ 292 (360)
T ss_dssp TGGGGCEECSCCCBC--------------------EEEEE-----------------ECSSEEEEEECCCCC-SHHHHHH
T ss_pred ccccceeecccCcCc--------------------eeEee-----------------ecCCCceEEEEEecC-CCeeEEE
Confidence 111111 1110 00000 000011111111111 1244566
Q ss_pred ccCCCCcccCCCCccCCCCccccccccchhhhhhhhhcccccccccCCCccEEEEecCCCeEeEEee
Q 005352 628 FESFPKGCATWPEEKLPALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGLVIVTAGWDGRIRSFLN 694 (701)
Q Consensus 628 ~~s~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ivTgg~DG~Irvw~~ 694 (701)
+++.++.+++|+.++... ..+ .+.+.++++++| |+.|++++.||.||+|..
T Consensus 293 ~~~~~~~i~~~d~~~~~~-~~~--------------~~~v~~~~~SpD-G~~l~~~~~Dg~i~v~d~ 343 (360)
T d1k32a3 293 GAPEKGVLLKYDVKTRKV-TEV--------------KNNLTDLRLSAD-RKTVMVRKDDGKIYTFPL 343 (360)
T ss_dssp CCCCCEEEEEEETTTCCE-EEE--------------EEEEEEEEECTT-SCEEEEEETTSCEEEEES
T ss_pred ecCCCCEEEEEECCCCeE-EEe--------------cCCcCEEEECCC-CCEEEEEECCCeEEEEEC
Confidence 778888999999776542 221 234677889999 999999999999999974
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.87 E-value=3.5e-21 Score=206.29 Aligned_cols=346 Identities=9% Similarity=0.017 Sum_probs=237.7
Q ss_pred cccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCC
Q 005352 216 AMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDP 295 (701)
Q Consensus 216 ~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~ 295 (701)
+++.+.++.|.|||...... ...+..|. .+..++|||||++|++++.|+.|++||+.+++.....
T Consensus 35 ~v~~~d~g~v~v~D~~t~~v-------~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~------- 99 (432)
T d1qksa2 35 SVTLRDAGQIALIDGSTYEI-------KTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVA------- 99 (432)
T ss_dssp EEEETTTTEEEEEETTTCCE-------EEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEE-------
T ss_pred EEEEcCCCEEEEEECCCCcE-------EEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEE-------
Confidence 35688899999998654321 23455564 5999999999999999999999999999876421111
Q ss_pred ceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-e-EEEEEC
Q 005352 296 SCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-Y-LLSASI 373 (701)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~-l~s~s~ 373 (701)
.+....+|.+.+.+..|+|+| + +++++.
T Consensus 100 --------------------------------------------------~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~ 129 (432)
T d1qksa2 100 --------------------------------------------------EIKIGSEARSIETSKMEGWEDKYAIAGAYW 129 (432)
T ss_dssp --------------------------------------------------EEECCSEEEEEEECCSTTCTTTEEEEEEEE
T ss_pred --------------------------------------------------EEecCCCCCCeEEecccCCCCCEEEEEcCC
Confidence 111123456667777888999 5 478888
Q ss_pred CCcEEEEECCCCeeeeeec------------CCCCeEEEEEeeCCCCEE-EEEEcCCcEEEEeCCCCcEE--EEecCCCc
Q 005352 374 DKTVRLWRVGNDHCLRVFP------------HSNYVTCVHFNPVDDNYF-ISGSIDGKVRIWAVLSCHVV--DWVDIRQI 438 (701)
Q Consensus 374 dg~I~iWd~~~~~~~~~~~------------h~~~V~~l~f~p~~~~~l-~sgs~dg~v~iwd~~~~~~~--~~~~~~~~ 438 (701)
+++|++||..+++++..+. +......+.++| ++..+ ++...++.|.+||..+.+.. ..+.+...
T Consensus 130 ~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~-dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~ 208 (432)
T d1qksa2 130 PPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASH-YRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERF 208 (432)
T ss_dssp TTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECS-SSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSS
T ss_pred CCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECC-CCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCc
Confidence 9999999999999887653 455677889999 77665 55666799999999887644 34566778
Q ss_pred EEEEEEeeCCCeEEEEec-CCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEE-CCCcEEEEeC
Q 005352 439 VTAVCYRPDGQGGIVGSM-MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSC-ADSQVRILQG 516 (701)
Q Consensus 439 i~~i~~sp~g~~l~~gs~-dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s-~dg~I~iwd~ 516 (701)
+..++|+|+|+++++++. ++.+.++|..+.+...... ......+......+.+.. .+....+.. .++.|.+|+.
T Consensus 209 ~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~-~g~~~~~~~lg~~~v~~~~~ 284 (432)
T d1qksa2 209 LHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIED---TGGQTPHPGRGANFVHPT-FGPVWATSHMGDDSVALIGT 284 (432)
T ss_dssp EEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEE---CSSSSBCCTTCEEEEETT-TEEEEEEEBSSSSEEEEEEC
T ss_pred cccceECCCCCEEEEeccccceEEEeecccceEEEEec---cCccccccCcccceecCC-CCceecccccCCceEEeccc
Confidence 999999999998887765 5578899998876643221 111122333334444433 333444333 3788999986
Q ss_pred CccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCC
Q 005352 517 PNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNA 596 (701)
Q Consensus 517 ~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 596 (701)
..... ..+...+....++|++..+++++.+...++|.........
T Consensus 285 ~~~~~----~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~------------------------------- 329 (432)
T d1qksa2 285 DPEGH----PDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEA------------------------------- 329 (432)
T ss_dssp CTTTC----TTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSH-------------------------------
T ss_pred ccccc----cccccEEEEEEEcCCCCeEEEEecCCccceeecccCCCCC-------------------------------
Confidence 54322 2255678999999999999999999999999865543100
Q ss_pred CCCCccccCCCCCCCccccCCCccccCccccccCCCCcccCCCCccCCCCccccccccchhhhhhhhhcccccccccCCC
Q 005352 597 EKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLSSASALHKSQYKFLKSSCLCTTSSHAW 676 (701)
Q Consensus 597 ~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (701)
.....++ .|+ +..+++++.|+.+++|+..+...+. .| ...+..++|+++
T Consensus 330 -----------~~~~sv~-vpD----g~~la~~s~d~~~k~w~~~~~~~l~---~~-----------~~~v~~~~fS~D- 378 (432)
T d1qksa2 330 -----------EISGSVA-VFD----IKAMTGDGSDPEFKTLPIAEWAGIT---EG-----------QPRVVQGEFNKD- 378 (432)
T ss_dssp -----------HHHTCEE-EEE----GGGCCCSSSCCCEEEECHHHHHTCC---SS-----------CCEEEEEEECTT-
T ss_pred -----------CeeeEEE-EEe----chhhcccccCCceEecccccccccC---CC-----------CCcEEEeEECCC-
Confidence 0001122 254 6677888999999999865543222 22 124556789999
Q ss_pred ccEEEEec-----CCCeEeEEeecCC
Q 005352 677 GLVIVTAG-----WDGRIRSFLNYGL 697 (701)
Q Consensus 677 g~~ivTgg-----~DG~Irvw~~~g~ 697 (701)
|+.|+... .+|.|+||+.-.+
T Consensus 379 G~~v~~S~~~~~~~~g~i~i~D~~T~ 404 (432)
T d1qksa2 379 GTEVWFSVWNGKDQESALVVVDDKTL 404 (432)
T ss_dssp SSEEEEEEECCTTSCCEEEEEETTTT
T ss_pred CCEEEEEEecCCCCCCcEEEEECCCc
Confidence 87664443 4789999985443
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.87 E-value=9.1e-20 Score=183.88 Aligned_cols=263 Identities=13% Similarity=0.144 Sum_probs=199.1
Q ss_pred ccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEE-EEeCCCcEEEEEeecCeeeeeecCCCCCC
Q 005352 217 MFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLA-SAGDDGVVRLWQVVEDERLTEVDIPEIDP 295 (701)
Q Consensus 217 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~La-sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~ 295 (701)
++.+.+++|.|||..... .. +++.. ...+..++|+|||++|+ +++.++.|++||+.+++.+..
T Consensus 6 V~~~~~~~v~v~D~~t~~--~~-----~~i~~-g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~-------- 69 (301)
T d1l0qa2 6 IANSESDNISVIDVTSNK--VT-----ATIPV-GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIAT-------- 69 (301)
T ss_dssp EEETTTTEEEEEETTTTE--EE-----EEEEC-SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEE--------
T ss_pred EEECCCCEEEEEECCCCe--EE-----EEEEC-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeee--------
Confidence 346788999999976542 11 22332 34578999999999874 667889999999988764432
Q ss_pred ceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC--eEEEEEC
Q 005352 296 SCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLSASI 373 (701)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~--~l~s~s~ 373 (701)
+..|. .+..++|++++ .++++..
T Consensus 70 ------------------------------------------------------~~~~~-~~~~~~~~~~~~~~~~~~~~ 94 (301)
T d1l0qa2 70 ------------------------------------------------------VPAGS-SPQGVAVSPDGKQVYVTNMA 94 (301)
T ss_dssp ------------------------------------------------------EECSS-SEEEEEECTTSSEEEEEETT
T ss_pred ------------------------------------------------------eeccc-cccccccccccccccccccc
Confidence 23333 46788999998 5556667
Q ss_pred CCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEE-EEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEE
Q 005352 374 DKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFI-SGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGI 452 (701)
Q Consensus 374 dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~-sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~ 452 (701)
++.+.+|+..+++....+.+...+.++.|+| ++..++ ++..++.+.+|+..+...+........+..+.++|++..++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (301)
T d1l0qa2 95 SSTLSVIDTTSNTVAGTVKTGKSPLGLALSP-DGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVY 173 (301)
T ss_dssp TTEEEEEETTTTEEEEEEECSSSEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEE
T ss_pred cceeeecccccceeeeeccccccceEEEeec-CCCeeeeeeccccceeeeeccccceeeecccCCCceEEEeecccccee
Confidence 8899999999999999999888899999999 777665 55567889999999999998888888899999999999888
Q ss_pred EEecC-CcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEEC---CCcEEEEeCCccceeeecccC
Q 005352 453 VGSMM-GDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCA---DSQVRILQGPNVIGKYKGLRR 528 (701)
Q Consensus 453 ~gs~d-g~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~---dg~I~iwd~~~~~~~~~~~~~ 528 (701)
++..+ +.+.+|+........... ....+..+++.+ ++..++++.. ++.|++||..+........ .
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~-~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~-~ 242 (301)
T d1l0qa2 174 VANFDSMSISVIDTVTNSVIDTVK---------VEAAPSGIAVNP-EGTKAYVTNVDKYFNTVSMIDTGTNKITARIP-V 242 (301)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEE---------CSSEEEEEEECT-TSSEEEEEEECSSCCEEEEEETTTTEEEEEEE-C
T ss_pred eecccccccccccccceeeeeccc---------ccCCcceeeccc-cccccccccccceeeeeeeeecCCCeEEEEEc-C
Confidence 88765 556777777665432111 124467889999 5555554433 4689999998765544332 4
Q ss_pred CCCeEEEEEecCCCEE-EEEeCCCcEEEEeCCCCC
Q 005352 529 SGNQLSACFTSDGKHI-VSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 529 ~~~v~~l~~s~dg~~l-~sgs~Dg~I~iWd~~~~~ 562 (701)
...+..++|+|||++| ++++.|+.|++||+++++
T Consensus 243 ~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~ 277 (301)
T d1l0qa2 243 GPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNT 277 (301)
T ss_dssp CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred CCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCe
Confidence 4678999999999987 577789999999999886
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.85 E-value=4.9e-20 Score=197.13 Aligned_cols=332 Identities=10% Similarity=0.056 Sum_probs=215.4
Q ss_pred cccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCC
Q 005352 216 AMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDP 295 (701)
Q Consensus 216 ~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~ 295 (701)
+++.+.+++|+|||...... ...+..|. .+..++|||||++|++++.|++|++||+.+++......
T Consensus 35 ~V~~~~dg~v~vwD~~t~~~-------~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~------ 100 (426)
T d1hzua2 35 SVTLRDAGQIALVDGDSKKI-------VKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAE------ 100 (426)
T ss_dssp EEEETTTTEEEEEETTTCSE-------EEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEE------
T ss_pred EEEEcCCCEEEEEECCCCcE-------EEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEE------
Confidence 35577899999998754321 13455564 58999999999999999999999999998875322111
Q ss_pred ceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eE-EEEEC
Q 005352 296 SCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YL-LSASI 373 (701)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l-~s~s~ 373 (701)
+....+|...+.+++|+|+| ++ +++..
T Consensus 101 ---------------------------------------------------i~~~~~~~~~~~s~~~spDG~~l~v~~~~ 129 (426)
T d1hzua2 101 ---------------------------------------------------IKIGIEARSVESSKFKGYEDRYTIAGAYW 129 (426)
T ss_dssp ---------------------------------------------------EECCSEEEEEEECCSTTCTTTEEEEEEEE
T ss_pred ---------------------------------------------------EeCCCCCcceEEeeeecCCCCEEEEeecC
Confidence 11123566777788899999 55 55668
Q ss_pred CCcEEEEECCCCeeeeeec------------CCCCeEEEEEeeCCCCEEEEEEc-CCcEEEEeCCCCc--EEEEecCCCc
Q 005352 374 DKTVRLWRVGNDHCLRVFP------------HSNYVTCVHFNPVDDNYFISGSI-DGKVRIWAVLSCH--VVDWVDIRQI 438 (701)
Q Consensus 374 dg~I~iWd~~~~~~~~~~~------------h~~~V~~l~f~p~~~~~l~sgs~-dg~v~iwd~~~~~--~~~~~~~~~~ 438 (701)
++++++||..++.++..+. +......+.+++ ++..++.... .+.+.+++..... .+....+...
T Consensus 130 ~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~-d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 208 (426)
T d1hzua2 130 PPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASH-EHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPF 208 (426)
T ss_dssp SSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECS-SSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSS
T ss_pred CCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECC-CCCEEEEecCCCCeEEEEEeccccceeeEEeccCCc
Confidence 9999999999998876654 334455666666 5555555443 3556666665544 3345677788
Q ss_pred EEEEEEeeCCCeEEEEec-CCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEE--EECCCcEEEEe
Q 005352 439 VTAVCYRPDGQGGIVGSM-MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMV--SCADSQVRILQ 515 (701)
Q Consensus 439 i~~i~~sp~g~~l~~gs~-dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~--~s~dg~I~iwd 515 (701)
+..+.++|++++++++.. +..+.+++..+.+........ ... .......+.+.....+.. .+.|+.+.+|+
T Consensus 209 ~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~ 282 (426)
T d1hzua2 209 LADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVG----KTP--HPGRGANFVHPKYGPVWSTSHLGDGSISLIG 282 (426)
T ss_dssp EEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECS----SCC--CCSCCEEEEETTTEEEEEEECTTTCEEEEEE
T ss_pred cEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccC----Ccc--cccceeeeecCCCCceEEeccCCCceEEEee
Confidence 999999999998888765 566889999988765432211 111 112223333323333332 33478888887
Q ss_pred CCcc-------ceeeecccCCCCeEEEEEecCCCEEEE-------EeCCCcEEEEeCCCCCCCCccccccccccccccCC
Q 005352 516 GPNV-------IGKYKGLRRSGNQLSACFTSDGKHIVS-------AGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTN 581 (701)
Q Consensus 516 ~~~~-------~~~~~~~~~~~~v~~l~~s~dg~~l~s-------gs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~ 581 (701)
.... ........|...+..++|+|++++|++ ++.|++|+|||+.+++....... .....
T Consensus 283 ~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~--~~~~~----- 355 (426)
T d1hzua2 283 TDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLP--IAEWA----- 355 (426)
T ss_dssp CCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEEC--HHHHH-----
T ss_pred ccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEec--cchhc-----
Confidence 6421 233334457888999999999999994 55688999999998874321100 00000
Q ss_pred ceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccc-cc----cCCCCcccCCCCccCCCCcccc
Q 005352 582 ASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEY-VF----ESFPKGCATWPEEKLPALSQLS 650 (701)
Q Consensus 582 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~-~~----~s~d~~~~~W~~~~~~~~~~~~ 650 (701)
.+......+..++|+|+ +..+ ++ .+.++.+.+|+..++.....+.
T Consensus 356 --------------------~~~~~~~rv~~~~fSpD----Gk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~ 405 (426)
T d1hzua2 356 --------------------DLGEGAKRVVQPEYNKR----GDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK 405 (426)
T ss_dssp --------------------CCCSSCCCEEEEEECSS----SSEEEEEECCCTTSCCEEEEEETTTTEEEEEEC
T ss_pred --------------------ccCCCCccEEEEEECCC----CCEEEEEEecCCCCCCeEEEEECCCCeEEEEEC
Confidence 00011222445678998 4333 33 3567789999988887655543
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.83 E-value=8.8e-20 Score=186.90 Aligned_cols=272 Identities=10% Similarity=0.081 Sum_probs=192.3
Q ss_pred cccccccccceEEEEEccCccchhhhcccCcee--ccCCCcEEEEEEccCCCEE-EEEeCCCcEEEEEeecCeeeeeecC
Q 005352 214 EDAMFCSKVQRVKVYHCKKRSKELSALYKGQEI--QAHDGSILTMKFSPDGQYL-ASAGDDGVVRLWQVVEDERLTEVDI 290 (701)
Q Consensus 214 ~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l--~~H~~~I~~l~fspdg~~L-asgs~Dg~I~iWd~~~~~~~~~~~~ 290 (701)
+++++++.|++|+|||...... ...+ ..+...+.+++|+|||++| ++++.++.|.+||+.+++.+..+..
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~-------~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~ 74 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAV-------DKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDL 74 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEE-------EEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEEC
T ss_pred eEEEEEcCCCEEEEEECCCCeE-------EEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEec
Confidence 4678899999999999865321 1123 2345567899999999987 5667899999999999876655443
Q ss_pred CCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEE
Q 005352 291 PEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLL 369 (701)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~ 369 (701)
+.. ..+...+..++|+|++ +++
T Consensus 75 ~~~---------------------------------------------------------~~~~~~~~~v~~s~dg~~l~ 97 (337)
T d1pbyb_ 75 STP---------------------------------------------------------EERVKSLFGAALSPDGKTLA 97 (337)
T ss_dssp CBT---------------------------------------------------------TEEEECTTCEEECTTSSEEE
T ss_pred CCC---------------------------------------------------------cccccceeeEEEcCCCcEEE
Confidence 211 0122334567888888 666
Q ss_pred EEE------------CCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCC
Q 005352 370 SAS------------IDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQ 437 (701)
Q Consensus 370 s~s------------~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~ 437 (701)
++. .+..+.+||..+++.+..+.+...+.+++|+| +++++++++ +.+.+||..+++.........
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~--~~~~~~d~~~~~~~~~~~~~~ 174 (337)
T d1pbyb_ 98 IYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWAR-DGSKLYGLG--RDLHVMDPEAGTLVEDKPIQS 174 (337)
T ss_dssp EEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECT-TSSCEEEES--SSEEEEETTTTEEEEEECSTT
T ss_pred EeecCCcceeeeccccccceeeccccCCeEEEeccccCCceEEEEcC-CCCEEEEEc--CCcceeeeecCcEEEEeecCC
Confidence 554 46789999999999999999888899999999 999998876 457889999988775554332
Q ss_pred cEEEEEEeeCC------------------------CeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEE
Q 005352 438 IVTAVCYRPDG------------------------QGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQ 493 (701)
Q Consensus 438 ~i~~i~~sp~g------------------------~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 493 (701)
......+.|++ ..+..+..++.+.+|++.++...... ...+...+..+.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~ 247 (337)
T d1pbyb_ 175 WEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMRE-------VRIMDVFYFSTA 247 (337)
T ss_dssp TTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEE-------EEECSSCEEEEE
T ss_pred ccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEE-------ecCCCcceEEEE
Confidence 22222222222 12222233456888888877643221 112335567788
Q ss_pred EecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCC
Q 005352 494 FLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEE 563 (701)
Q Consensus 494 ~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~ 563 (701)
+.| ++.+++.+ ++.|++||+.+........ +...+.+++|+|||++|++++.|+.|++||..+.+.
T Consensus 248 ~~~-~~~~~~~~--~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~ 313 (337)
T d1pbyb_ 248 VNP-AKTRAFGA--YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEK 313 (337)
T ss_dssp ECT-TSSEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCE
T ss_pred ecc-cceEEEEc--cccEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcE
Confidence 888 56666554 5899999998766555443 566789999999999999999999999999998763
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.80 E-value=8e-18 Score=169.34 Aligned_cols=244 Identities=13% Similarity=0.146 Sum_probs=180.4
Q ss_pred cCeEEEEEecCC-eE-EEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEE-EEEcCCcEEEEeCCCCcEEE
Q 005352 355 GEILDLSWSKNN-YL-LSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFI-SGSIDGKVRIWAVLSCHVVD 431 (701)
Q Consensus 355 ~~I~~l~~s~~~-~l-~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~-sgs~dg~v~iwd~~~~~~~~ 431 (701)
..+..++|+|+| +| ++++.++.|++||+.+++.+..+.....+..++|++ ++..++ ++..++.+.+|+..+++...
T Consensus 32 ~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (301)
T d1l0qa2 32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSP-DGKQVYVTNMASSTLSVIDTTSNTVAG 110 (301)
T ss_dssp SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccccccccccc-ccccccccccccceeeecccccceeee
Confidence 346789999999 55 566789999999999999999998667789999999 776554 55567789999999999998
Q ss_pred EecCCCcEEEEEEeeCCCeEEE-EecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEEC-CC
Q 005352 432 WVDIRQIVTAVCYRPDGQGGIV-GSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCA-DS 509 (701)
Q Consensus 432 ~~~~~~~i~~i~~sp~g~~l~~-gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~-dg 509 (701)
...+...+..++++|+++.+++ +..++.+.+|+..+........ ....+..+.++| ++..++++.. ++
T Consensus 111 ~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~-~~~~~~~~~~~~~ 180 (301)
T d1l0qa2 111 TVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVS---------VGRSPKGIAVTP-DGTKVYVANFDSM 180 (301)
T ss_dssp EEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE---------CCSSEEEEEECT-TSSEEEEEETTTT
T ss_pred eccccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecc---------cCCCceEEEeec-cccceeeeccccc
Confidence 8888888999999999998765 4557889999999877543221 224578899999 5566666655 56
Q ss_pred cEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEe---CCCcEEEEeCCCCCCCCccccccccccccccCCceEEe
Q 005352 510 QVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAG---EDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAI 586 (701)
Q Consensus 510 ~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs---~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 586 (701)
.+.+|+........ .......+..++|++++..++.++ .++.|++||+.+++.. ..+
T Consensus 181 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~--------~~~----------- 240 (301)
T d1l0qa2 181 SISVIDTVTNSVID-TVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKIT--------ARI----------- 240 (301)
T ss_dssp EEEEEETTTTEEEE-EEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEE--------EEE-----------
T ss_pred ccccccccceeeee-cccccCCcceeeccccccccccccccceeeeeeeeecCCCeEE--------EEE-----------
Confidence 66777766443322 233456678899999999887664 3467999998877521 000
Q ss_pred cCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCcc-ccccCCCCcccCCCCccCCCCccccc
Q 005352 587 PWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQE-YVFESFPKGCATWPEEKLPALSQLSS 651 (701)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~-~~~~s~d~~~~~W~~~~~~~~~~~~~ 651 (701)
.....+..++|+|+ ++. |++++.++.+++|+.+++..+.+++.
T Consensus 241 ------------------~~~~~~~~va~spd----g~~l~va~~~~~~i~v~D~~t~~~~~~~~v 284 (301)
T d1l0qa2 241 ------------------PVGPDPAGIAVTPD----GKKVYVALSFCNTVSVIDTATNTITATMAV 284 (301)
T ss_dssp ------------------ECCSSEEEEEECTT----SSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred ------------------cCCCCEEEEEEeCC----CCEEEEEECCCCeEEEEECCCCeEEEEEeC
Confidence 00123456788998 554 56788899999999988877666643
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.79 E-value=5e-19 Score=189.28 Aligned_cols=298 Identities=8% Similarity=-0.021 Sum_probs=191.6
Q ss_pred eeeecCccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEE-EEEeCCCcEEEEEeecCeee
Q 005352 207 ERVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYL-ASAGDDGVVRLWQVVEDERL 285 (701)
Q Consensus 207 ~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~L-asgs~Dg~I~iWd~~~~~~~ 285 (701)
.+++++++++++++.|+.|++||+........ ...+...+|.+.+.+..|+|||++| +++..++.|+|||..+++.+
T Consensus 67 v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~--~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~ 144 (432)
T d1qksa2 67 SRLSASGRYLFVIGRDGKVNMIDLWMKEPTTV--AEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPK 144 (432)
T ss_dssp EEECTTSCEEEEEETTSEEEEEETTSSSCCEE--EEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEE
T ss_pred EEECCCCCEEEEEcCCCCEEEEEeeCCCceEE--EEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccce
Confidence 46788888999999999999999865432211 1112234577888888999999986 67888999999999998766
Q ss_pred eeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecC
Q 005352 286 TEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN 365 (701)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~ 365 (701)
..+..+..... .....+......+.++++
T Consensus 145 ~~~~~~~~~~~---------------------------------------------------~~~~~~~~~~~~v~~s~d 173 (432)
T d1qksa2 145 KIQSTRGMTYD---------------------------------------------------EQEYHPEPRVAAILASHY 173 (432)
T ss_dssp EEEECCEECTT---------------------------------------------------TCCEESCCCEEEEEECSS
T ss_pred eeeccCCcccc---------------------------------------------------ceeccCCCceeEEEECCC
Confidence 55432211000 000124556778899999
Q ss_pred C--eEEEEECCCcEEEEECCCCeeee--eecCCCCeEEEEEeeCCCCEEEEEEc-CCcEEEEeCCCCcEEEEecC-----
Q 005352 366 N--YLLSASIDKTVRLWRVGNDHCLR--VFPHSNYVTCVHFNPVDDNYFISGSI-DGKVRIWAVLSCHVVDWVDI----- 435 (701)
Q Consensus 366 ~--~l~s~s~dg~I~iWd~~~~~~~~--~~~h~~~V~~l~f~p~~~~~l~sgs~-dg~v~iwd~~~~~~~~~~~~----- 435 (701)
+ .+++...++.|.+||..+.+... .+.+...+.+++|+| +++++++++. ++.+.++|..+++.+.....
T Consensus 174 g~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~sp-dg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~ 252 (432)
T d1qksa2 174 RPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDG-SHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTP 252 (432)
T ss_dssp SSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECT-TSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSB
T ss_pred CCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECC-CCCEEEEeccccceEEEeecccceEEEEeccCcccc
Confidence 8 55677788999999998876544 455777899999999 9998777765 45789999988877654432
Q ss_pred -CCcEEEEEEeeCCCeEEEEe-cCCcEEEEECCCCeee-----eeeeEEeec-------------------ccCCCCCCe
Q 005352 436 -RQIVTAVCYRPDGQGGIVGS-MMGDCRFYNVSDNHLE-----LDAEICVHS-------------------KKKAPCKRI 489 (701)
Q Consensus 436 -~~~i~~i~~sp~g~~l~~gs-~dg~v~i~d~~~~~~~-----~~~~~~~~~-------------------~~~~~~~~i 489 (701)
........+...+....+.. .++.+.+|+....... ....+.... ....+....
T Consensus 253 ~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~ 332 (432)
T d1qksa2 253 HPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEIS 332 (432)
T ss_dssp CCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHH
T ss_pred ccCcccceecCCCCceecccccCCceEEecccccccccccccEEEEEEEcCCCCeEEEEecCCccceeecccCCCCCCee
Confidence 22233333333333333332 2566777765432210 000000000 000000111
Q ss_pred eEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEe-----CCCcEEEEeCCCCCC
Q 005352 490 TGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAG-----EDSNVYMWNCIGHEE 563 (701)
Q Consensus 490 ~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs-----~Dg~I~iWd~~~~~~ 563 (701)
..+++ | ++..+++++.|+.+++|++.+.... ..|...+.+++|+|||++|+.+. .+|.|.|||-.+.++
T Consensus 333 ~sv~v-p-Dg~~la~~s~d~~~k~w~~~~~~~l---~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~ 406 (432)
T d1qksa2 333 GSVAV-F-DIKAMTGDGSDPEFKTLPIAEWAGI---TEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLEL 406 (432)
T ss_dssp TCEEE-E-EGGGCCCSSSCCCEEEECHHHHHTC---CSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEE
T ss_pred eEEEE-E-echhhcccccCCceEeccccccccc---CCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCCceE
Confidence 22333 5 5777888888888888886543222 23667899999999999886553 468899999998874
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.78 E-value=6e-18 Score=180.60 Aligned_cols=321 Identities=7% Similarity=0.014 Sum_probs=197.2
Q ss_pred eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEE--Ee----cCCCcEE
Q 005352 367 YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD--WV----DIRQIVT 440 (701)
Q Consensus 367 ~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~--~~----~~~~~i~ 440 (701)
++++.+.||+|+|||+.+++.+..+.....+..++|+| |+++|++++.|++|++||+.+++... .+ .+...+.
T Consensus 34 ~~V~~~~dg~v~vwD~~t~~~~~~l~~g~~~~~vafSP-DGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~ 112 (426)
T d1hzua2 34 FSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSA-SGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVES 112 (426)
T ss_dssp EEEEETTTTEEEEEETTTCSEEEEEECCSSEEEEEECT-TSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEE
T ss_pred EEEEEcCCCEEEEEECCCCcEEEEEeCCCCeeEEEECC-CCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEE
Confidence 56888899999999999999999998767899999999 99999999999999999999886432 22 3444566
Q ss_pred EEEEeeCCCeEEEE-ecCCcEEEEECCCCeeeeeeeEEeec---ccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeC
Q 005352 441 AVCYRPDGQGGIVG-SMMGDCRFYNVSDNHLELDAEICVHS---KKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQG 516 (701)
Q Consensus 441 ~i~~sp~g~~l~~g-s~dg~v~i~d~~~~~~~~~~~~~~~~---~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~ 516 (701)
+++|+|||++++++ ..++.+++||..+............. ....+......+.++++....+.+....+.+.+++.
T Consensus 113 s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~ 192 (426)
T d1hzua2 113 SKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNY 192 (426)
T ss_dssp CCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEEC
T ss_pred eeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEe
Confidence 77788899987665 47899999999988765433211111 111233445566777743333334444566767766
Q ss_pred Cccce-eeecccCCCCeEEEEEecCCCEEEEEe-CCCcEEEEeCCCCCCCCcccc----ccccccccccC--CceEEecC
Q 005352 517 PNVIG-KYKGLRRSGNQLSACFTSDGKHIVSAG-EDSNVYMWNCIGHEEPAHDQA----KTIRSLERFTT--NASIAIPW 588 (701)
Q Consensus 517 ~~~~~-~~~~~~~~~~v~~l~~s~dg~~l~sgs-~Dg~I~iWd~~~~~~~~~~~~----~~~~~~~~~~~--~~~~a~~~ 588 (701)
..... ......+...+..+.|+|++++++++. .+..+.+|+..+++....... ........... ....+...
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (426)
T d1hzua2 193 KDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSH 272 (426)
T ss_dssp SSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEEC
T ss_pred ccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEecc
Confidence 54332 222334677889999999999988776 456688999887764221110 00000000000 11111111
Q ss_pred CC----------CCCCCCCCCCccc--cCCCCCCCccccCCCccccCcccc-------ccCCCCcccCCCCccCCCCccc
Q 005352 589 CG----------LKCGNAEKEPQLH--VSDDDSPENLAFAPARFSLGQEYV-------FESFPKGCATWPEEKLPALSQL 649 (701)
Q Consensus 589 ~~----------~~~~~~~~~~~~~--~~~~~~~~~l~~sp~~~~~~~~~~-------~~s~d~~~~~W~~~~~~~~~~~ 649 (701)
.+ ...+......... ..+...+..++|+|+ +..++ +++.++++++|+...+....++
T Consensus 273 ~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPd----g~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~ 348 (426)
T d1hzua2 273 LGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPK----SSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQV 348 (426)
T ss_dssp TTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTT----CSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEE
T ss_pred CCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCC----CceEEEeecCCCCcccCCEEEEEECCCCCcCeEE
Confidence 11 1111111111111 122445778899998 44444 3456788999999888766554
Q ss_pred cccccchhhhhhhhhcccccccccCCCccEE-EE----ecCCCeEeEEeec
Q 005352 650 SSASALHKSQYKFLKSSCLCTTSSHAWGLVI-VT----AGWDGRIRSFLNY 695 (701)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i-vT----gg~DG~Irvw~~~ 695 (701)
..+.. ...+. -....|..++|+++ |+.| ++ ++.||.|+||+.-
T Consensus 349 ~~~~~-~~~~~-~~~~rv~~~~fSpD-Gk~i~vs~~~~~~~~~~i~v~D~~ 396 (426)
T d1hzua2 349 LPIAE-WADLG-EGAKRVVQPEYNKR-GDEVWFSVWNGKNDSSALVVVDDK 396 (426)
T ss_dssp ECHHH-HHCCC-SSCCCEEEEEECSS-SSEEEEEECCCTTSCCEEEEEETT
T ss_pred eccch-hcccC-CCCccEEEEEECCC-CCEEEEEEecCCCCCCeEEEEECC
Confidence 22210 00000 01223666789999 8755 44 3568999999743
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.77 E-value=4.2e-18 Score=174.90 Aligned_cols=278 Identities=7% Similarity=0.005 Sum_probs=188.4
Q ss_pred eeecCccccccccccceEEEEEccCccchhhhcccCceec-cCCCcEEEEEEccCCCEE-EEEeCCCcEEEEEeecCeee
Q 005352 208 RVRLNEEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQ-AHDGSILTMKFSPDGQYL-ASAGDDGVVRLWQVVEDERL 285 (701)
Q Consensus 208 ~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~-~H~~~I~~l~fspdg~~L-asgs~Dg~I~iWd~~~~~~~ 285 (701)
+++.+++++++++.++.|.|||...... . ..++ .|...+.+++|+|||++| +++..++.|.+||+.+++.+
T Consensus 3 a~~~~~~~l~~~~~~~~v~v~D~~t~~~-~------~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~ 75 (346)
T d1jmxb_ 3 ALKAGHEYMIVTNYPNNLHVVDVASDTV-Y------KSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNT 75 (346)
T ss_dssp CCCTTCEEEEEEETTTEEEEEETTTTEE-E------EEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred cCCCCCcEEEEEcCCCEEEEEECCCCCE-E------EEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeee
Confidence 4567788999999999999999865321 1 2233 356677899999999987 55667899999999998766
Q ss_pred eeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecC
Q 005352 286 TEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKN 365 (701)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~ 365 (701)
..+...... ..+...+..++|+|+
T Consensus 76 ~~~~~~~~~--------------------------------------------------------~~~~~~~~~v~~s~D 99 (346)
T d1jmxb_ 76 FHANLSSVP--------------------------------------------------------GEVGRSMYSFAISPD 99 (346)
T ss_dssp EEEESCCST--------------------------------------------------------TEEEECSSCEEECTT
T ss_pred eeecccccc--------------------------------------------------------cccCCceEEEEEecC
Confidence 544322110 011223456788898
Q ss_pred C-eEEEEE------------CCCcEEEEECCCCeeeeeec---CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcE
Q 005352 366 N-YLLSAS------------IDKTVRLWRVGNDHCLRVFP---HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHV 429 (701)
Q Consensus 366 ~-~l~s~s------------~dg~I~iWd~~~~~~~~~~~---h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~ 429 (701)
| ++++++ .++.+.+|+..+++....+. ....+..+.+++ ++.++++ ++.+.+|++.+++.
T Consensus 100 G~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~ 175 (346)
T d1jmxb_ 100 GKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAAD-DGSLYVA---GPDIYKMDVKTGKY 175 (346)
T ss_dssp SSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECT-TSCEEEE---SSSEEEECTTTCCE
T ss_pred CCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecC-CCEEEEe---CCcceEEEccCCCE
Confidence 8 665543 46789999998876554443 445666677776 6665554 35689999999888
Q ss_pred EEEecCCCcEEEEEEeeCCCeEE--------------------------EEecCCcEEEEECCCCeeeeeeeEEeecccC
Q 005352 430 VDWVDIRQIVTAVCYRPDGQGGI--------------------------VGSMMGDCRFYNVSDNHLELDAEICVHSKKK 483 (701)
Q Consensus 430 ~~~~~~~~~i~~i~~sp~g~~l~--------------------------~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~ 483 (701)
+...........+.++|++..++ ++..++.+.+|++.+....... ..
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~ 248 (346)
T d1jmxb_ 176 TVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQE-------FA 248 (346)
T ss_dssp EEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEE-------EE
T ss_pred EEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEE-------ee
Confidence 87665555555555566554432 2233445666676665433211 11
Q ss_pred CCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 484 APCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 484 ~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
.+...+..+.+++++ ..++... ++.|.+||..+....... .+...+.+++|+|||++|++++.|+.|++||+.+.+
T Consensus 249 ~~~~~~~~~~~~~~~-~~~~~~~-~~~v~v~d~~~~~~~~~~-~~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~ 324 (346)
T d1jmxb_ 249 DLTELYFTGLRSPKD-PNQIYGV-LNRLAKYDLKQRKLIKAA-NLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLE 324 (346)
T ss_dssp ECSSCEEEEEECSSC-TTEEEEE-ESEEEEEETTTTEEEEEE-ECSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTE
T ss_pred cccceeEEEEEeCCC-CEEEEec-CCeEEEEECCCCcEEEEE-cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCC
Confidence 234567788888854 4444443 457999998876544333 245578999999999999999999999999999876
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.76 E-value=4.9e-18 Score=173.66 Aligned_cols=281 Identities=9% Similarity=-0.003 Sum_probs=196.8
Q ss_pred CEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccc
Q 005352 263 QYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRI 342 (701)
Q Consensus 263 ~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (701)
.||++++.|++|+|||+.+++.+..+..+
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~--------------------------------------------------- 30 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIA--------------------------------------------------- 30 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECT---------------------------------------------------
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEEECC---------------------------------------------------
Confidence 48999999999999999998765544322
Q ss_pred cCCCeEEEcCCccCeEEEEEecCC-eE-EEEECCCcEEEEECCCCeeeeeecC------CCCeEEEEEeeCCCCEEEEEE
Q 005352 343 LEKPLHEFHGHSGEILDLSWSKNN-YL-LSASIDKTVRLWRVGNDHCLRVFPH------SNYVTCVHFNPVDDNYFISGS 414 (701)
Q Consensus 343 ~~~~~~~~~~h~~~I~~l~~s~~~-~l-~s~s~dg~I~iWd~~~~~~~~~~~h------~~~V~~l~f~p~~~~~l~sgs 414 (701)
.+...+.+++|+|+| ++ ++++.++.|.+||+.+++.+..+.. ...+..++|+| ++++++++.
T Consensus 31 ---------~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~-dg~~l~~~~ 100 (337)
T d1pbyb_ 31 ---------DAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSP-DGKTLAIYE 100 (337)
T ss_dssp ---------TCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECT-TSSEEEEEE
T ss_pred ---------CCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcC-CCcEEEEee
Confidence 233456789999999 55 5667899999999999999887752 23456789999 999888776
Q ss_pred ------------cCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeeccc
Q 005352 415 ------------IDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKK 482 (701)
Q Consensus 415 ------------~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~ 482 (701)
.+..+.+||..+++..........+..++|+|+|+++++++ +.+.+||..+.+....... ....
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~--~~~~~~d~~~~~~~~~~~~--~~~~ 176 (337)
T d1pbyb_ 101 SPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLG--RDLHVMDPEAGTLVEDKPI--QSWE 176 (337)
T ss_dssp EEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEES--SSEEEEETTTTEEEEEECS--TTTT
T ss_pred cCCcceeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEc--CCcceeeeecCcEEEEeec--CCcc
Confidence 35789999999999988888888899999999999999986 4578899988876543221 1100
Q ss_pred CCCCCCeeEEEEecC----------------CCCEEEEEECCCcEEEEeCCccceeee-cccCCCCeEEEEEecCCCEEE
Q 005352 483 KAPCKRITGFQFLPQ----------------DSSKVMVSCADSQVRILQGPNVIGKYK-GLRRSGNQLSACFTSDGKHIV 545 (701)
Q Consensus 483 ~~~~~~i~~l~~~p~----------------~~~~l~~~s~dg~I~iwd~~~~~~~~~-~~~~~~~v~~l~~s~dg~~l~ 545 (701)
...........+.+. +...+..+..++.+.+|+......... ...+...+..+++++++.+++
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (337)
T d1pbyb_ 177 AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAF 256 (337)
T ss_dssp TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEE
T ss_pred ccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEE
Confidence 000000000001000 111112223345688888876543332 233667788899999999988
Q ss_pred EEeCCCcEEEEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCcc
Q 005352 546 SAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQE 625 (701)
Q Consensus 546 sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~ 625 (701)
.+ ++.|++||+.+++.. ..+ .....+..++|+|+ +..
T Consensus 257 ~~--~~~i~v~d~~~~~~~--------~~~-----------------------------~~~~~~~~~~~s~d----G~~ 293 (337)
T d1pbyb_ 257 GA--YNVLESFDLEKNASI--------KRV-----------------------------PLPHSYYSVNVSTD----GST 293 (337)
T ss_dssp EE--ESEEEEEETTTTEEE--------EEE-----------------------------ECSSCCCEEEECTT----SCE
T ss_pred Ec--cccEEEEECCCCcEE--------EEE-----------------------------cCCCCEEEEEECCC----CCE
Confidence 76 588999999887621 000 01223566889998 777
Q ss_pred ccccCCCCcccCCCCccCCCCccccc
Q 005352 626 YVFESFPKGCATWPEEKLPALSQLSS 651 (701)
Q Consensus 626 ~~~~s~d~~~~~W~~~~~~~~~~~~~ 651 (701)
+++++.++.+++|+.+.++.+.++..
T Consensus 294 l~v~~~~~~i~v~D~~t~~~v~~i~~ 319 (337)
T d1pbyb_ 294 VWLGGALGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp EEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred EEEEeCCCcEEEEECCCCcEEEEEEC
Confidence 78888999999999999988877643
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.76 E-value=6.5e-17 Score=165.25 Aligned_cols=279 Identities=11% Similarity=0.180 Sum_probs=186.0
Q ss_pred ccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEe-CCCcEEEEEeecCeeeeeecCCCCCC
Q 005352 217 MFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAG-DDGVVRLWQVVEDERLTEVDIPEIDP 295 (701)
Q Consensus 217 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs-~Dg~I~iWd~~~~~~~~~~~~~~~~~ 295 (701)
++++.+++|+||+++.... +. . .....|.+.|..|+|+|||++|++++ .|+.|++|++........+
T Consensus 8 v~~~~~~~I~v~~~~~~~~-l~---~-~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~------- 75 (333)
T d1ri6a_ 8 IASPESQQIHVWNLNHEGA-LT---L-TQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTF------- 75 (333)
T ss_dssp EEEGGGTEEEEEEECTTSC-EE---E-EEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE-------
T ss_pred EECCCCCcEEEEEEcCCCC-eE---E-EEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEE-------
Confidence 4577899999999864321 11 1 11235788999999999999996555 5899999999765321111
Q ss_pred ceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEEC-
Q 005352 296 SCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASI- 373 (701)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~- 373 (701)
.....+...+..++|+|+| +|++++.
T Consensus 76 ----------------------------------------------------~~~~~~~~~p~~l~~spDg~~l~v~~~~ 103 (333)
T d1ri6a_ 76 ----------------------------------------------------AAESALPGSLTHISTDHQGQFVFVGSYN 103 (333)
T ss_dssp ----------------------------------------------------EEEEECSSCCSEEEECTTSSEEEEEETT
T ss_pred ----------------------------------------------------eeecccCCCceEEEEcCCCCEEeecccC
Confidence 0011233456789999999 7777775
Q ss_pred CCcEEEEECCCCeeeeee---cCCCCeEEEEEeeCCCCEEEEEEc-CCcEEEEeCCCCcEEE-------EecCCCcEEEE
Q 005352 374 DKTVRLWRVGNDHCLRVF---PHSNYVTCVHFNPVDDNYFISGSI-DGKVRIWAVLSCHVVD-------WVDIRQIVTAV 442 (701)
Q Consensus 374 dg~I~iWd~~~~~~~~~~---~h~~~V~~l~f~p~~~~~l~sgs~-dg~v~iwd~~~~~~~~-------~~~~~~~i~~i 442 (701)
++.|.+|+.......... .+...+.++.++| +++++++++. +..|.+|+........ .......+..+
T Consensus 104 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~-d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i 182 (333)
T d1ri6a_ 104 AGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISP-DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHM 182 (333)
T ss_dssp TTEEEEEEEETTEEEEEEEEECCCTTBCCCEECT-TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEE
T ss_pred CCceeeeccccccceecccccCCCccceEEEeee-cceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEE
Confidence 778999998777655443 3677889999999 8888887774 4569999987653221 22234567889
Q ss_pred EEeeCCCeEEEEe-cCCcEEEEECCCCeeeeee--eEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCcc
Q 005352 443 CYRPDGQGGIVGS-MMGDCRFYNVSDNHLELDA--EICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNV 519 (701)
Q Consensus 443 ~~sp~g~~l~~gs-~dg~v~i~d~~~~~~~~~~--~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~ 519 (701)
+|++++..++... ..+...+|+.......... .................++++++....++++..++.+.+|+....
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~ 262 (333)
T d1ri6a_ 183 VFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSED 262 (333)
T ss_dssp EECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred EEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCC
Confidence 9999998877654 4566778877544332222 122222223344566778899954445555566889999987643
Q ss_pred ceeee---cccCCCCeEEEEEecCCCEEEEEe-CCCcEEEEeCCC
Q 005352 520 IGKYK---GLRRSGNQLSACFTSDGKHIVSAG-EDSNVYMWNCIG 560 (701)
Q Consensus 520 ~~~~~---~~~~~~~v~~l~~s~dg~~l~sgs-~Dg~I~iWd~~~ 560 (701)
..... .......+..++|+|||++|++++ .++.|.+|+++.
T Consensus 263 ~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~ 307 (333)
T d1ri6a_ 263 GSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVG 307 (333)
T ss_dssp SCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEET
T ss_pred CCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEEC
Confidence 22221 122445678899999999988775 458899996643
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.70 E-value=9.7e-17 Score=164.48 Aligned_cols=290 Identities=7% Similarity=-0.029 Sum_probs=192.9
Q ss_pred EEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEc
Q 005352 256 MKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVF 335 (701)
Q Consensus 256 l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (701)
++|+++++||++++.|+.|.|||+.+++.+.++.+
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~--------------------------------------------- 36 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVM--------------------------------------------- 36 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEEC---------------------------------------------
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEc---------------------------------------------
Confidence 47899999999999999999999999875544322
Q ss_pred CCccccccCCCeEEEcCCccCeEEEEEecCC-eE-EEEECCCcEEEEECCCCeeeeeecCC-------CCeEEEEEeeCC
Q 005352 336 PPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YL-LSASIDKTVRLWRVGNDHCLRVFPHS-------NYVTCVHFNPVD 406 (701)
Q Consensus 336 ~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l-~s~s~dg~I~iWd~~~~~~~~~~~h~-------~~V~~l~f~p~~ 406 (701)
.|...+.+++|+|+| ++ ++++.++.|++||+.+++.+..+... ..+..++|+| +
T Consensus 37 ----------------~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~-D 99 (346)
T d1jmxb_ 37 ----------------PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISP-D 99 (346)
T ss_dssp ----------------SSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECT-T
T ss_pred ----------------CCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEec-C
Confidence 234556799999999 54 56668899999999999998877522 2456789999 9
Q ss_pred CCEEEEEE------------cCCcEEEEeCCCCcEE---EEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeee
Q 005352 407 DNYFISGS------------IDGKVRIWAVLSCHVV---DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLE 471 (701)
Q Consensus 407 ~~~l~sgs------------~dg~v~iwd~~~~~~~---~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~ 471 (701)
+++++++. .++.+.+|+..+++.. ........+..+.+++++..++. ++.+.+|++.+.+..
T Consensus 100 G~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 176 (346)
T d1jmxb_ 100 GKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVA---GPDIYKMDVKTGKYT 176 (346)
T ss_dssp SSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEE---SSSEEEECTTTCCEE
T ss_pred CCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEe---CCcceEEEccCCCEE
Confidence 99887765 4677899998876543 23334455666777777765544 256899999877654
Q ss_pred eeeeEEeec--ccC-----------CCCCCeeE---EEEecCCCCEEEEEECCCcEEEEeCCccceeee-cccCCCCeEE
Q 005352 472 LDAEICVHS--KKK-----------APCKRITG---FQFLPQDSSKVMVSCADSQVRILQGPNVIGKYK-GLRRSGNQLS 534 (701)
Q Consensus 472 ~~~~~~~~~--~~~-----------~~~~~i~~---l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~-~~~~~~~v~~ 534 (701)
......... ... .....+.. ....+.....+.++..+..+.+||......... ...+...+..
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (346)
T d1jmxb_ 177 VALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFT 256 (346)
T ss_dssp EEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEE
T ss_pred EEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEE
Confidence 322110000 000 00000100 111111233444555567788888876544333 2336778889
Q ss_pred EEEecCCCEEEEEeCCCcEEEEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccc
Q 005352 535 ACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLA 614 (701)
Q Consensus 535 l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 614 (701)
+.+++++.+++.+.. +.|++||..+++.. ..+ .....+..++
T Consensus 257 ~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~--------~~~-----------------------------~~~~~~~~va 298 (346)
T d1jmxb_ 257 GLRSPKDPNQIYGVL-NRLAKYDLKQRKLI--------KAA-----------------------------NLDHTYYCVA 298 (346)
T ss_dssp EEECSSCTTEEEEEE-SEEEEEETTTTEEE--------EEE-----------------------------ECSSCCCEEE
T ss_pred EEEeCCCCEEEEecC-CeEEEEECCCCcEE--------EEE-----------------------------cCCCCEEEEE
Confidence 999999988887764 57999998877521 011 0122456688
Q ss_pred cCCCccccCccccccCCCCcccCCCCccCCCCcccccc
Q 005352 615 FAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLSSA 652 (701)
Q Consensus 615 ~sp~~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~~ 652 (701)
|+|+ +..+++++.++.+++|+.++++.+.++..+
T Consensus 299 ~s~D----G~~l~v~~~d~~v~v~D~~t~~~i~~i~~p 332 (346)
T d1jmxb_ 299 FDKK----GDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 332 (346)
T ss_dssp ECSS----SSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred EcCC----CCEEEEEeCCCcEEEEECccCCEEEEEECC
Confidence 9998 778888889999999999999888776443
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.64 E-value=1.3e-13 Score=143.13 Aligned_cols=301 Identities=10% Similarity=-0.055 Sum_probs=192.6
Q ss_pred ccCCCcEEEEEEccCCCEEEEE-----eCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceee
Q 005352 247 QAHDGSILTMKFSPDGQYLASA-----GDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISIL 321 (701)
Q Consensus 247 ~~H~~~I~~l~fspdg~~Lasg-----s~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (701)
.+|.+++.+++++|||+.++.. +.++.|.+||..+++.+.+
T Consensus 17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~---------------------------------- 62 (373)
T d2madh_ 17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGH---------------------------------- 62 (373)
T ss_pred ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEE----------------------------------
Confidence 4688999999999999988764 2345788999888764432
Q ss_pred EEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEE----------CCCcEEEEECCCCeeeee
Q 005352 322 KSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSAS----------IDKTVRLWRVGNDHCLRV 390 (701)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s----------~dg~I~iWd~~~~~~~~~ 390 (701)
+..+.. ..++|+|+| +|++++ .++.|.+||..+++.+..
T Consensus 63 ----------------------------~~~~~~--~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~ 112 (373)
T d2madh_ 63 ----------------------------VNGGFL--PNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIAD 112 (373)
T ss_pred ----------------------------EeCCCC--ccEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEE
Confidence 233332 268899999 776654 457899999999998887
Q ss_pred ec-CCC-------CeEEEEEeeCCCCEEEEEE--cCCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeE-EEEecCCc
Q 005352 391 FP-HSN-------YVTCVHFNPVDDNYFISGS--IDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGG-IVGSMMGD 459 (701)
Q Consensus 391 ~~-h~~-------~V~~l~f~p~~~~~l~sgs--~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l-~~gs~dg~ 459 (701)
+. +.. ....+.|++ +++.++... .++.+.+|+....+..... ....++.++|+++.+ ++.+.|+.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~s~-dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~s~~g~~~~v~~~~dg~ 188 (373)
T d2madh_ 113 IELPDAPRFDVGPYSWMNANTP-NNADLLFFQFAAGPAVGLVVQGGSSDDQLL---SSPTCYHIHPGAPSTFYLLCAQGG 188 (373)
T ss_pred EecCCcceeEeccCCCcEEEEe-CCCcEEEEEEcCCCceEEeeccCCeEEEEe---ccceeEEEecCCCcEEEEEcCCCe
Confidence 75 222 234578888 777665544 3567889988877655433 346688899998765 57788999
Q ss_pred EEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceee--ecccCCCCeEEEEE
Q 005352 460 CRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKY--KGLRRSGNQLSACF 537 (701)
Q Consensus 460 v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~--~~~~~~~~v~~l~~ 537 (701)
+.+|+............... ..........+.+.+ ...++..+.++.+.+|+........ .............+
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (373)
T d2madh_ 189 LAKTDHAGGAAGAGLVGAML--TAAQNLLTQPAQANK--SGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTW 264 (373)
T ss_pred EEEEEcCCceeeEEEeeecc--ccCccceeeeEEECC--CceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeee
Confidence 99999988765433221111 111112223333433 4566677788999999877543221 11223344555556
Q ss_pred ecCCCEEEEEeCCCcEEEEeCCCCCCCCccccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCC
Q 005352 538 TSDGKHIVSAGEDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAP 617 (701)
Q Consensus 538 s~dg~~l~sgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp 617 (701)
.|.+...+..+.|+....+-...+
T Consensus 265 ~~~~~~~~~~~~d~~~~~~~~~~~-------------------------------------------------------- 288 (373)
T d2madh_ 265 RPGGWQQVAYLKSSDGIYLLTSEQ-------------------------------------------------------- 288 (373)
T ss_pred ccCcceeeEEecCCCeEEEecCCC--------------------------------------------------------
Confidence 666666666666655443322111
Q ss_pred CccccCccccccCCCCcccCCCCccCCCCccccccccchhhhhhhhhcccccccccCCCcc--EEEEecCCCeEeEEee
Q 005352 618 ARFSLGQEYVFESFPKGCATWPEEKLPALSQLSSASALHKSQYKFLKSSCLCTTSSHAWGL--VIVTAGWDGRIRSFLN 694 (701)
Q Consensus 618 ~~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~ivTgg~DG~Irvw~~ 694 (701)
..++....++.+.+|+......+..+... ..+..++++++ |+ ++++++.||.|++|+.
T Consensus 289 ------~~~~~~~~~~~v~~~d~~t~~~~~~~~~~------------~~~~~~a~spD-G~~~l~vt~~~d~~v~v~D~ 348 (373)
T d2madh_ 289 ------SAWKLHAAAKEVTSVTGLVGQTSSQISLG------------HDVDAISVAQD-GGPDLYALSAGTEVLHIYDA 348 (373)
T ss_pred ------ceEEeecCCCeEEEEECCCCcEEEEecCC------------CCeeEEEECCC-CCEEEEEEeCCCCeEEEEEC
Confidence 11222334456667776666665555322 24667788998 76 5689999999999984
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.62 E-value=5e-13 Score=138.51 Aligned_cols=298 Identities=8% Similarity=-0.034 Sum_probs=180.3
Q ss_pred eeecCccccccc-----cccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEe----------CCC
Q 005352 208 RVRLNEEDAMFC-----SKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAG----------DDG 272 (701)
Q Consensus 208 ~~~~~~~~~~~~-----~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs----------~Dg 272 (701)
.+++++..+++. ...+.|.|||.... +.. .++.++..+ .++|+|||++|++++ .++
T Consensus 27 a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg--~~~-----~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~~~ 97 (373)
T d2madh_ 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSG--SIL-----GHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTD 97 (373)
T ss_pred ccCCCCCEEEEEcccccCCCceEEEEECCCC--CEE-----EEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccccce
Confidence 455666665542 23355777764332 111 234445443 799999999999875 367
Q ss_pred cEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcC
Q 005352 273 VVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHG 352 (701)
Q Consensus 273 ~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (701)
.|.+||..+++.+..+..+............ .+.+...+........ ........+. ........
T Consensus 98 ~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~------~~~~s~dg~~~~v~~~-~~~~~~~~~~--------~~~~~~~~ 162 (373)
T d2madh_ 98 YVEVFDPVTFLPIADIELPDAPRFDVGPYSW------MNANTPNNADLLFFQF-AAGPAVGLVV--------QGGSSDDQ 162 (373)
T ss_pred EEEEEECCCCcEEEEEecCCcceeEeccCCC------cEEEEeCCCcEEEEEE-cCCCceEEee--------ccCCeEEE
Confidence 8999999999988777665443222111110 1111111111111000 0001111111 11112234
Q ss_pred CccCeEEEEEecCC--eEEEEECCCcEEEEECCCCeeeeeec-------CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEe
Q 005352 353 HSGEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFP-------HSNYVTCVHFNPVDDNYFISGSIDGKVRIWA 423 (701)
Q Consensus 353 h~~~I~~l~~s~~~--~l~s~s~dg~I~iWd~~~~~~~~~~~-------h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd 423 (701)
+.....++.+++++ .+++.+.|+.+.+|+...+....... .......+.+.+ +..++..+.++.+.+|+
T Consensus 163 ~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~ 240 (373)
T d2madh_ 163 LLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANK--SGRIVWPVYSGKILQAD 240 (373)
T ss_pred EeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECC--CceEEEecCCceEEEEE
Confidence 44556788999998 67889999999999999888776653 112233444544 34556667789999999
Q ss_pred CCCCcEEEEe---cCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCC
Q 005352 424 VLSCHVVDWV---DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSS 500 (701)
Q Consensus 424 ~~~~~~~~~~---~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~ 500 (701)
.......... ........+.+.|.+...+..+.++...++- . ..+.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~------------------------------~-~~~~ 289 (373)
T d2madh_ 241 ISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLL------------------------------T-SEQS 289 (373)
T ss_pred cCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEe------------------------------c-CCCc
Confidence 9887654322 2334455556666655555555555432221 1 1456
Q ss_pred EEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCE--EEEEeCCCcEEEEeCCCCCC
Q 005352 501 KVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKH--IVSAGEDSNVYMWNCIGHEE 563 (701)
Q Consensus 501 ~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~--l~sgs~Dg~I~iWd~~~~~~ 563 (701)
.++....++.+.+||..+....... .+...+..++|+|||+. +++++.|+.|++||+.+++.
T Consensus 290 ~~~~~~~~~~v~~~d~~t~~~~~~~-~~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~ 353 (373)
T d2madh_ 290 AWKLHAAAKEVTSVTGLVGQTSSQI-SLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQ 353 (373)
T ss_pred eEEeecCCCeEEEEECCCCcEEEEe-cCCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCE
Confidence 6777788899999998876554433 36677899999999984 46889999999999999874
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.61 E-value=5.7e-14 Score=142.87 Aligned_cols=281 Identities=11% Similarity=0.130 Sum_probs=178.3
Q ss_pred eEEEEECCCcEEEEECCCC---eeeeeecCCCCeEEEEEeeCCCCEEEEEE-cCCcEEEEeCCCCc----EEEEecCCCc
Q 005352 367 YLLSASIDKTVRLWRVGND---HCLRVFPHSNYVTCVHFNPVDDNYFISGS-IDGKVRIWAVLSCH----VVDWVDIRQI 438 (701)
Q Consensus 367 ~l~s~s~dg~I~iWd~~~~---~~~~~~~h~~~V~~l~f~p~~~~~l~sgs-~dg~v~iwd~~~~~----~~~~~~~~~~ 438 (701)
.+++++.|++|++|++... +.++.+.|.+.+..|+|+| ++++|++++ .|+.|++|++.... ..........
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~sp-DG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~ 84 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSP-DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGS 84 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECT-TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSC
T ss_pred EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeC-CCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCC
Confidence 4577889999999998765 4455667999999999999 999886555 48999999987653 2233445566
Q ss_pred EEEEEEeeCCCeEEEEec-CCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEE-CCCcEEEEeC
Q 005352 439 VTAVCYRPDGQGGIVGSM-MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSC-ADSQVRILQG 516 (701)
Q Consensus 439 i~~i~~sp~g~~l~~gs~-dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s-~dg~I~iwd~ 516 (701)
+..++|+|||++|++++. ++.+.+|+........... ...+...+.++.++| +++++++++ .+..|.+|+.
T Consensus 85 p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~------~~~~~~~~~~v~~s~-d~~~~~~~~~~~~~i~~~~~ 157 (333)
T d1ri6a_ 85 LTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVD------VVEGLDGCHSANISP-DNRTLWVPALKQDRICLFTV 157 (333)
T ss_dssp CSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEE------EECCCTTBCCCEECT-TSSEEEEEEGGGTEEEEEEE
T ss_pred ceEEEEcCCCCEEeecccCCCceeeeccccccceeccc------ccCCCccceEEEeee-cceeeeccccccceeeEEEe
Confidence 788999999999999875 6789999987765433221 122335577889999 566666655 4677999987
Q ss_pred Cccceee------ecccCCCCeEEEEEecCCCEEEEEe-CCCcEEEEeCCCCCCCCccccccccccccccCCceEEecCC
Q 005352 517 PNVIGKY------KGLRRSGNQLSACFTSDGKHIVSAG-EDSNVYMWNCIGHEEPAHDQAKTIRSLERFTTNASIAIPWC 589 (701)
Q Consensus 517 ~~~~~~~------~~~~~~~~v~~l~~s~dg~~l~sgs-~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 589 (701)
....... ...........++|++++.+++... ..+...+|++......... ...+.. .
T Consensus 158 ~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~--------------~ 222 (333)
T d1ri6a_ 158 SDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIEC-VQTLDM--------------M 222 (333)
T ss_dssp CTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEE-EEEEEC--------------S
T ss_pred ccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceee-eeeeee--------------e
Confidence 6432211 1122445678899999999887664 5567888887654421100 000000 0
Q ss_pred CCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCCcccCCCCccCCCCccccccccchhhhhhhhhccccc
Q 005352 590 GLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEKLPALSQLSSASALHKSQYKFLKSSCLC 669 (701)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 669 (701)
+. ..........++++|++ ...++....++.+.+|..+.......+..+.. ....+..
T Consensus 223 ~~-----------~~~~~~~~~~~~~s~d~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~p~~ 280 (333)
T d1ri6a_ 223 PE-----------NFSDTRWAADIHITPDG---RHLYACDRTASLITVFSVSEDGSVLSKEGFQP--------TETQPRG 280 (333)
T ss_dssp CT-----------TCCSCCCEEEEEECTTS---SEEEEEETTTTEEEEEEECTTSCCEEEEEEEE--------CSSSCCC
T ss_pred ec-----------CCCccccceeEEEeccc---CceeeecccCCeEEEEEEcCCCCEEEEEEEeC--------CCCCeeE
Confidence 00 00011122334566662 23445556667788887665544333222100 0134567
Q ss_pred ccccCCCccEEEEe-cCCCeEeEEe
Q 005352 670 TTSSHAWGLVIVTA-GWDGRIRSFL 693 (701)
Q Consensus 670 ~~~~~~~g~~ivTg-g~DG~Irvw~ 693 (701)
++++++ |++|+++ ..++.|++|.
T Consensus 281 ~a~spD-Gk~l~va~~~~~~v~v~~ 304 (333)
T d1ri6a_ 281 FNVDHS-GKYLIAAGQKSHHISVYE 304 (333)
T ss_dssp EEECTT-SSEEEEECTTTCEEEEEE
T ss_pred EEEeCC-CCEEEEEECCCCeEEEEE
Confidence 889999 8866555 5679999995
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.59 E-value=8.6e-14 Score=143.15 Aligned_cols=286 Identities=11% Similarity=0.038 Sum_probs=176.9
Q ss_pred eeecCcccccc-----ccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEE----------eCCC
Q 005352 208 RVRLNEEDAMF-----CSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASA----------GDDG 272 (701)
Q Consensus 208 ~~~~~~~~~~~-----~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasg----------s~Dg 272 (701)
..++++..+++ +...+.|.|||...... ...+..+..+ .++|||||++|+++ ..|+
T Consensus 8 a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~-------~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~ 78 (355)
T d2bbkh_ 8 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRV-------IGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTD 78 (355)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEE-------EEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEE
T ss_pred eeCCCCCEEEEEecccCCCcCeEEEEECCCCcE-------EEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCC
Confidence 44556655543 24566799998754321 1223444444 79999999988765 3478
Q ss_pred cEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcC
Q 005352 273 VVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHG 352 (701)
Q Consensus 273 ~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (701)
.|++||..+++.+..+..+.... ..
T Consensus 79 ~v~v~D~~t~~~~~~~~~~~~~~-------------------------------------------------------~~ 103 (355)
T d2bbkh_ 79 YVEVFDPVTLLPTADIELPDAPR-------------------------------------------------------FL 103 (355)
T ss_dssp EEEEECTTTCCEEEEEEETTCCC-------------------------------------------------------CC
T ss_pred EEEEEECCCCCEEEEEecCCcce-------------------------------------------------------ee
Confidence 99999999987665543322110 01
Q ss_pred CccCeEEEEEecCC-eEEEEE--CCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcE
Q 005352 353 HSGEILDLSWSKNN-YLLSAS--IDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHV 429 (701)
Q Consensus 353 h~~~I~~l~~s~~~-~l~s~s--~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~ 429 (701)
.......++|++++ +++.++ .+..+.+|+..+++.+..+......... .. ....+++.+.|+...++.......
T Consensus 104 ~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~dg~~~~v~~~~~~~ 180 (355)
T d2bbkh_ 104 VGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIF--PT-APDTFFMHCRDGSLAKVAFGTEGT 180 (355)
T ss_dssp BSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEE--EE-ETTEEEEEETTSCEEEEECCSSSC
T ss_pred cCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEe--ec-CCcceEEEcCCCCEEEEEecCCCe
Confidence 11223457899998 555554 5678999999999998887644333221 11 334445555666655554443322
Q ss_pred EEEe-------cCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecc----cCCCCCCeeEEEEecCC
Q 005352 430 VDWV-------DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSK----KKAPCKRITGFQFLPQD 498 (701)
Q Consensus 430 ~~~~-------~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~----~~~~~~~i~~l~~~p~~ 498 (701)
.... .+...+....+.+++..++.++.++.+++|++..+............. ..........+++++ +
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-d 259 (355)
T d2bbkh_ 181 PEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHR-A 259 (355)
T ss_dssp CEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEET-T
T ss_pred EEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeC-C
Confidence 2111 223335566788888899999999999999998876433221111100 000112234578888 5
Q ss_pred CCEEEEEECC----------CcEEEEeCCccceeeecccCCCCeEEEEEecCCC--EEEEEeCCCcEEEEeCCCCC
Q 005352 499 SSKVMVSCAD----------SQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGK--HIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 499 ~~~l~~~s~d----------g~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~--~l~sgs~Dg~I~iWd~~~~~ 562 (701)
+..++....+ ..|.+||..+........ +...+.+++|+|||+ ++++++.|+.|++||+.+++
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~ 334 (355)
T d2bbkh_ 260 LDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE-MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGE 334 (355)
T ss_dssp TTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred CCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEec-CCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCC
Confidence 6666555433 369999988655433322 345678999999997 45677889999999999987
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.49 E-value=3e-13 Score=139.02 Aligned_cols=246 Identities=8% Similarity=-0.017 Sum_probs=147.5
Q ss_pred EEEEecCC-eEEEE----------ECCCcEEEEECCCCeeeeeec--------CCCCeEEEEEeeCCCCEEEEEE--cCC
Q 005352 359 DLSWSKNN-YLLSA----------SIDKTVRLWRVGNDHCLRVFP--------HSNYVTCVHFNPVDDNYFISGS--IDG 417 (701)
Q Consensus 359 ~l~~s~~~-~l~s~----------s~dg~I~iWd~~~~~~~~~~~--------h~~~V~~l~f~p~~~~~l~sgs--~dg 417 (701)
.++|+|++ +|+.+ ..|+.|++||+.+++.+..+. .......++|+| ++++++.+. .+.
T Consensus 51 ~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~~~v~~~~~~~ 129 (355)
T d2bbkh_ 51 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTP-DGKTLLFYQFSPAP 129 (355)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECT-TSSEEEEEECSSSC
T ss_pred ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEec-CCCeeEEecCCCCc
Confidence 68999999 55543 457899999999999887764 122345689999 888887765 456
Q ss_pred cEEEEeCCCCcEEEEecCCCcE--------EEEEEeeCCCeEEEEec-CCcEEEEECCCCeeeeeeeEEeecccCCCCCC
Q 005352 418 KVRIWAVLSCHVVDWVDIRQIV--------TAVCYRPDGQGGIVGSM-MGDCRFYNVSDNHLELDAEICVHSKKKAPCKR 488 (701)
Q Consensus 418 ~v~iwd~~~~~~~~~~~~~~~i--------~~i~~sp~g~~l~~gs~-dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 488 (701)
.+.+|+..+++.+......... ..+.++++++.+++... ++.+.+++.... ...+...
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~-------------~~~~~~~ 196 (355)
T d2bbkh_ 130 AVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVF-------------HPEDEFL 196 (355)
T ss_dssp EEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCC-------------SCTTSCB
T ss_pred eeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccc-------------cceecce
Confidence 7999999999887665544332 23344444444443322 222333333221 1222233
Q ss_pred eeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeec--ccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCCCCCc
Q 005352 489 ITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKG--LRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHEEPAH 566 (701)
Q Consensus 489 i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~--~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~~~~~ 566 (701)
+....+.+ ++..++.++.++.+++|+.......... ..+........+.|++...++.+.|+...+|....+..
T Consensus 197 ~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~--- 272 (355)
T d2bbkh_ 197 INHPAYSQ-KAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDE--- 272 (355)
T ss_dssp CSCCEEET-TTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCT---
T ss_pred eeeccccC-CCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCc---
Confidence 44556676 5778888899999999998754322111 11222223334555555555556666555554322210
Q ss_pred cccccccccccccCCceEEecCCCCCCCCCCCCCccccCCCCCCCccccCCCccccCccccccCCCCcccCCCCccCCCC
Q 005352 567 DQAKTIRSLERFTTNASIAIPWCGLKCGNAEKEPQLHVSDDDSPENLAFAPARFSLGQEYVFESFPKGCATWPEEKLPAL 646 (701)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp~~~~~~~~~~~~s~d~~~~~W~~~~~~~~ 646 (701)
.+.......+.+|+......+
T Consensus 273 -----------------------------------------------------------~~~~~~~~~v~v~d~~t~~~~ 293 (355)
T d2bbkh_ 273 -----------------------------------------------------------WRHKTASRFVVVLDAKTGERL 293 (355)
T ss_dssp -----------------------------------------------------------TCTTSCEEEEEEEETTTCCEE
T ss_pred -----------------------------------------------------------eeecCCCCeEEEEeCCCCcEE
Confidence 001112245666776666655
Q ss_pred ccccccccchhhhhhhhhcccccccccCCCcc--EEEEecCCCeEeEEee
Q 005352 647 SQLSSASALHKSQYKFLKSSCLCTTSSHAWGL--VIVTAGWDGRIRSFLN 694 (701)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~ivTgg~DG~Irvw~~ 694 (701)
..+..+ ..+.+++++++ |+ ++++++.||.|++|+.
T Consensus 294 ~~~~~~------------~~~~~~a~spD-G~~~l~v~~~~d~~i~v~D~ 330 (355)
T d2bbkh_ 294 AKFEMG------------HEIDSINVSQD-EKPLLYALSTGDKTLYIHDA 330 (355)
T ss_dssp EEEEEE------------EEECEEEECCS-SSCEEEEEETTTTEEEEEET
T ss_pred EEecCC------------CCEEEEEEcCC-CCeEEEEEECCCCEEEEEEC
Confidence 554332 24667788888 75 6788899999999973
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.33 E-value=6.5e-12 Score=130.13 Aligned_cols=276 Identities=8% Similarity=-0.027 Sum_probs=166.7
Q ss_pred ccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEe----------CCCcEEEEEeecCeeeeee
Q 005352 219 CSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAG----------DDGVVRLWQVVEDERLTEV 288 (701)
Q Consensus 219 ~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs----------~Dg~I~iWd~~~~~~~~~~ 288 (701)
...++...||-++....++. ..+.+|..+ .++|+|||++|++++ .|+.|++||..+++.+..+
T Consensus 40 ~~~~g~~~~~~~d~~~~~~~-----~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i 112 (368)
T d1mdah_ 40 AYFAGTTENWVSCAGCGVTL-----GHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADI 112 (368)
T ss_dssp TTTCSSEEEEEEETTTTEEE-----EEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEE
T ss_pred ccCCCcceEEEEeCCCCcEE-----EEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeee
Confidence 34455555554433322222 234445544 589999999988764 4788999999998766655
Q ss_pred cCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-e
Q 005352 289 DIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-Y 367 (701)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~ 367 (701)
..+..... ........++|+|+| +
T Consensus 113 ~~p~~~~~-------------------------------------------------------~~g~~p~~~a~SpDGk~ 137 (368)
T d1mdah_ 113 ELPDAPRF-------------------------------------------------------SVGPRVHIIGNCASSAC 137 (368)
T ss_dssp EETTSCSC-------------------------------------------------------CBSCCTTSEEECTTSSC
T ss_pred cCCcccee-------------------------------------------------------cccCCccceEECCCCCE
Confidence 43321100 001112357899999 6
Q ss_pred EEEEE-CCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEe-------cCCCcE
Q 005352 368 LLSAS-IDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV-------DIRQIV 439 (701)
Q Consensus 368 l~s~s-~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~-------~~~~~i 439 (701)
|+.+. .++.|.+||+.+++.+..+....... +.|.....++..+.||.+.++++......... .+...+
T Consensus 138 l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (368)
T d1mdah_ 138 LLFFLFGSSAAAGLSVPGASDDQLTKSASCFH---IHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSS 214 (368)
T ss_dssp EEEEECSSSCEEEEEETTTEEEEEEECSSCCC---CEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCS
T ss_pred EEEEeCCCCeEEEEECCCCcEeEEeeccCcce---EccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccce
Confidence 76665 57999999999999988876333221 22224567788888999999988765433221 223334
Q ss_pred EEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecc----cCCCCCCeeEEEEecCCCCEEEEEEC-C------
Q 005352 440 TAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSK----KKAPCKRITGFQFLPQDSSKVMVSCA-D------ 508 (701)
Q Consensus 440 ~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~----~~~~~~~i~~l~~~p~~~~~l~~~s~-d------ 508 (701)
..+.+.+++..+. ...+.+.++++..+............. ..........++++++ +..+++... +
T Consensus 215 ~~~~~~~~g~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~-~~~~~v~~~~~~~~~~~ 291 (368)
T d1mdah_ 215 QAAQANYPGMLVW--AVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKN-TDGIMILTVEHSRSCLA 291 (368)
T ss_dssp CCEEETTTTEEEE--CBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETT-TTEEEEEEEECSSCTTS
T ss_pred eecccccCcEEEE--ecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCC-CCEEEEEecCCCceeec
Confidence 5566677765544 345667777776655432211111000 0001112345778884 454444332 2
Q ss_pred --CcEEEEeCCccceeeecccCCCCeEEEEEecCCC-E-EEEEeCCCcEEEEeCCCCCC
Q 005352 509 --SQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGK-H-IVSAGEDSNVYMWNCIGHEE 563 (701)
Q Consensus 509 --g~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~-~-l~sgs~Dg~I~iWd~~~~~~ 563 (701)
..|.+||..+........ +...+.+++|+|||+ + ++++..|+.|++||..+++.
T Consensus 292 ~~~~v~v~D~~t~~~~~~~~-~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~ 349 (368)
T d1mdah_ 292 AAENTSSVTASVGQTSGPIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQD 349 (368)
T ss_dssp CEEEEEEEESSSCCEEECCE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEE
T ss_pred CCceEEEEECCCCcEeEEec-CCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCE
Confidence 358899988765443332 345688899999997 3 46777899999999998873
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.26 E-value=1.7e-10 Score=123.42 Aligned_cols=149 Identities=10% Similarity=0.117 Sum_probs=111.8
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEE
Q 005352 255 TMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVV 334 (701)
Q Consensus 255 ~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (701)
.+.|.++++++.. .|+.|.+||+.+++....+..
T Consensus 21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~-------------------------------------------- 54 (470)
T d2bgra1 21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFLEN-------------------------------------------- 54 (470)
T ss_dssp CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECT--------------------------------------------
T ss_pred CCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEch--------------------------------------------
Confidence 5789999988764 478899999998864322211
Q ss_pred cCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEEC---------CCcEEEEECCCCeeeeeecCCCCeEEEEEee
Q 005352 335 FPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASI---------DKTVRLWRVGNDHCLRVFPHSNYVTCVHFNP 404 (701)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~---------dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p 404 (701)
..+..|...|.++.||||+ +|+.++. ++.+.|||+.+++......+...+..+.|+|
T Consensus 55 -------------~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~~l~~~~~~~~~~~~SP 121 (470)
T d2bgra1 55 -------------STFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSP 121 (470)
T ss_dssp -------------TTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECS
T ss_pred -------------hhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcccccccCCcccccccccc
Confidence 1234577789999999999 7777643 5678999999998776666889999999999
Q ss_pred CCCCEEEEEEcCCcEEEEeCCCCcEEEEecC-------------------CCcEEEEEEeeCCCeEEEEecCCc-EEEEE
Q 005352 405 VDDNYFISGSIDGKVRIWAVLSCHVVDWVDI-------------------RQIVTAVCYRPDGQGGIVGSMMGD-CRFYN 464 (701)
Q Consensus 405 ~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~-------------------~~~i~~i~~sp~g~~l~~gs~dg~-v~i~d 464 (701)
+++.||... ++.+++|+..+++....... .+....+.|+|||+.|+....|.. +..|.
T Consensus 122 -DG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~ 199 (470)
T d2bgra1 122 -VGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIE 199 (470)
T ss_dssp -STTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEE
T ss_pred -CcceeeEee-cccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceEE
Confidence 999999865 78899999998876643321 123456789999999999876543 44433
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.19 E-value=1.6e-11 Score=127.50 Aligned_cols=238 Identities=13% Similarity=0.055 Sum_probs=152.3
Q ss_pred cCCCcEEEEEEccCCCEEEEEe-CCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeee
Q 005352 248 AHDGSILTMKFSPDGQYLASAG-DDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRR 326 (701)
Q Consensus 248 ~H~~~I~~l~fspdg~~Lasgs-~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (701)
.|........++|||++|+... .++.|.++|+.+.+....+.++
T Consensus 69 ~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP----------------------------------- 113 (441)
T d1qnia2 69 CHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIP----------------------------------- 113 (441)
T ss_dssp BCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECT-----------------------------------
T ss_pred ccCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecC-----------------------------------
Confidence 3555666777789999986654 6789999999988755433322
Q ss_pred cCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC---eEEEEECCC-----------------cEEEEECCCCe
Q 005352 327 TSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN---YLLSASIDK-----------------TVRLWRVGNDH 386 (701)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~---~l~s~s~dg-----------------~I~iWd~~~~~ 386 (701)
+...+..++|+|++ +++..+.+. .+..+|..+.+
T Consensus 114 --------------------------~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~ 167 (441)
T d1qnia2 114 --------------------------NVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMD 167 (441)
T ss_dssp --------------------------TCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCS
T ss_pred --------------------------CCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccce
Confidence 23456667777766 333333321 23557888877
Q ss_pred eeeeecCCCCeEEEEEeeCCCCEEEEEEcC-----------------------------------------CcEEEEeCC
Q 005352 387 CLRVFPHSNYVTCVHFNPVDDNYFISGSID-----------------------------------------GKVRIWAVL 425 (701)
Q Consensus 387 ~~~~~~h~~~V~~l~f~p~~~~~l~sgs~d-----------------------------------------g~v~iwd~~ 425 (701)
....+.....+..+.|+| +++++++.+.+ +.+.+++..
T Consensus 168 v~~qI~v~~~p~~v~~sp-dGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~ 246 (441)
T d1qnia2 168 VAWQVIVDGNLDNTDADY-TGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRG 246 (441)
T ss_dssp EEEEEEESSCCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSS
T ss_pred eeEEEecCCCccceEECC-CCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEccc
Confidence 777776566678888888 88887777643 334444444
Q ss_pred CCcEEEEecCCCcEEEEEEeeCCCeEEE-EecCCcEEEEECCCCeeeeeee----EEeecccCCCCCCeeEEEEecCCCC
Q 005352 426 SCHVVDWVDIRQIVTAVCYRPDGQGGIV-GSMMGDCRFYNVSDNHLELDAE----ICVHSKKKAPCKRITGFQFLPQDSS 500 (701)
Q Consensus 426 ~~~~~~~~~~~~~i~~i~~sp~g~~l~~-gs~dg~v~i~d~~~~~~~~~~~----~~~~~~~~~~~~~i~~l~~~p~~~~ 500 (701)
....+..+........+.++|||+++++ +..+++|.+||+.+........ ..+... ..........+|.+ ++.
T Consensus 247 ~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~-~~~glgplh~~fd~-~g~ 324 (441)
T d1qnia2 247 ESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAE-PELGLGPLHTTFDG-RGN 324 (441)
T ss_dssp SCSSEEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEEC-CBCCSCEEEEEECS-SSE
T ss_pred CCceEEEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEee-cccccCcccceecC-Cce
Confidence 4455555555566788999999998766 5679999999986532111000 001110 11122345567888 677
Q ss_pred EEEEEECCCcEEEEeCCccc------------eeee---cccCCCCeEEEEEecCCCEEEEEeC
Q 005352 501 KVMVSCADSQVRILQGPNVI------------GKYK---GLRRSGNQLSACFTSDGKHIVSAGE 549 (701)
Q Consensus 501 ~l~~~s~dg~I~iwd~~~~~------------~~~~---~~~~~~~v~~l~~s~dg~~l~sgs~ 549 (701)
.+.+...|++|..|++.... .... ..+|...+.+.+++|||+||++++.
T Consensus 325 ~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~k 388 (441)
T d1qnia2 325 AYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSK 388 (441)
T ss_dssp EEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEES
T ss_pred EEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecCc
Confidence 77778889999999964211 1111 1235555666778999999999953
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.17 E-value=1.2e-10 Score=120.92 Aligned_cols=252 Identities=13% Similarity=0.094 Sum_probs=158.0
Q ss_pred EEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccC
Q 005352 265 LASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILE 344 (701)
Q Consensus 265 Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (701)
++|++.+|.|+||++.+++.+..+......+.. ....+.....++.. .
T Consensus 14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~------------g~g~~~es~~vl~~--------------------~ 61 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSAT------------GWGITNESKEILGG--------------------D 61 (441)
T ss_dssp EEECBTTCCEEEEEETTTEEEEEECSSSBCTTT------------CTTTSHHHHHHHCS--------------------S
T ss_pred EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCE------------EEEECCccceEEec--------------------c
Confidence 678889999999999999988877542211100 00001000000000 0
Q ss_pred CCeEEEcCCccCeEEEEEecCC-eEE-EEECCCcEEEEECCCCeeeeeec--CCCCeEEEEEeeCCCC--EEEEEEcCC-
Q 005352 345 KPLHEFHGHSGEILDLSWSKNN-YLL-SASIDKTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDN--YFISGSIDG- 417 (701)
Q Consensus 345 ~~~~~~~~h~~~I~~l~~s~~~-~l~-s~s~dg~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~~~~--~l~sgs~dg- 417 (701)
.....-..|..........||| +|+ +...+..|.++|+.++++...+. +...+..++|+| +++ +++..+.+.
T Consensus 62 ~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~sp-dg~t~YV~~~~~~~v 140 (441)
T d1qnia2 62 QQYLNGDCHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQK-VPKTNYVFCNAEFVI 140 (441)
T ss_dssp SCCSCCCBCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECC-SSBCCEEEEEECSCE
T ss_pred cccccCcccCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEec-cCCEEEEEeccCCcc
Confidence 0001112354555666678899 554 44578899999999999887654 677899999999 777 444444332
Q ss_pred ----------------cEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecCCc---------------E------
Q 005352 418 ----------------KVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGD---------------C------ 460 (701)
Q Consensus 418 ----------------~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~---------------v------ 460 (701)
.+..+|..+.++.........+..+.++|+|+++++++.+.. |
T Consensus 141 ~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p 220 (441)
T d1qnia2 141 PQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVE 220 (441)
T ss_dssp ESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHH
T ss_pred cccCcccccccccccceEEeecCccceeeEEEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCcc
Confidence 235588888887766666677889999999999998875421 1
Q ss_pred --------------------EEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEE-EEEECCCcEEEEeCCcc
Q 005352 461 --------------------RFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKV-MVSCADSQVRILQGPNV 519 (701)
Q Consensus 461 --------------------~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l-~~~s~dg~I~iwd~~~~ 519 (701)
.+++........ ...-.....++.++| +++++ +++..+++|.+||+.+.
T Consensus 221 ~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~---------~IPvgksPhGv~vSP-DGkyl~~~~~~~~tvsv~d~~k~ 290 (441)
T d1qnia2 221 RIAAAVKAGNFKTIGDSKVPVVDGRGESEFTR---------YIPVPKNPHGLNTSP-DGKYFIANGKLSPTVSVIAIDKL 290 (441)
T ss_dssp HHHHHHHTTCCBCCTTCCCCEEECSSSCSSEE---------EECCBSSCCCEEECT-TSCEEEEECTTSSBEEEEEGGGH
T ss_pred ceEEEecCCCEEEeCCCCcEEEEcccCCceEE---------EEeCCCCccCceECC-CCCEEEEeCCcCCcEEEEEeehh
Confidence 112111111100 001123356789999 56655 55666999999998654
Q ss_pred ceeeecc-----------cCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 005352 520 IGKYKGL-----------RRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCI 559 (701)
Q Consensus 520 ~~~~~~~-----------~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~ 559 (701)
...+... ...-.....+|+++|..+.+...|+.|..|++.
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~ 341 (441)
T d1qnia2 291 DDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIA 341 (441)
T ss_dssp HHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHH
T ss_pred hhHhhccCCcceEEEeecccccCcccceecCCceEEEcccccceEEEeccc
Confidence 3322111 112234567899999988999999999999984
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.16 E-value=7.3e-10 Score=118.35 Aligned_cols=132 Identities=11% Similarity=0.169 Sum_probs=97.9
Q ss_pred cccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeC---------CCcEEEEEeecCeeeeeecC
Q 005352 220 SKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGD---------DGVVRLWQVVEDERLTEVDI 290 (701)
Q Consensus 220 ~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~---------Dg~I~iWd~~~~~~~~~~~~ 290 (701)
..++.+.+|+....... .+.....+..|...|.++.|||||++||.++. ++.+.|||+.+++.
T Consensus 33 ~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~------ 104 (470)
T d2bgra1 33 KQENNILVFNAEYGNSS--VFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL------ 104 (470)
T ss_dssp ESSSCEEEEETTTCCEE--EEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE------
T ss_pred EcCCcEEEEECCCCCEE--EEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcc------
Confidence 44678999998655432 33445567889999999999999999998854 46678888877642
Q ss_pred CCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEE
Q 005352 291 PEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLL 369 (701)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~ 369 (701)
..+..|...+..+.|||+| +++
T Consensus 105 ---------------------------------------------------------~~l~~~~~~~~~~~~SPDG~~ia 127 (470)
T d2bgra1 105 ---------------------------------------------------------ITEERIPNNTQWVTWSPVGHKLA 127 (470)
T ss_dssp ---------------------------------------------------------CCSSCCCTTEEEEEECSSTTCEE
T ss_pred ---------------------------------------------------------cccccCCccccccccccCcceee
Confidence 2234577889999999999 666
Q ss_pred EEECCCcEEEEECCCCeeeeeec-------------------CCCCeEEEEEeeCCCCEEEEEEcCCc
Q 005352 370 SASIDKTVRLWRVGNDHCLRVFP-------------------HSNYVTCVHFNPVDDNYFISGSIDGK 418 (701)
Q Consensus 370 s~s~dg~I~iWd~~~~~~~~~~~-------------------h~~~V~~l~f~p~~~~~l~sgs~dg~ 418 (701)
. ..++.+.+|+..+++..+... ..+....+.|+| ++++|+....|..
T Consensus 128 ~-~~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSP-DGk~ia~~~~d~~ 193 (470)
T d2bgra1 128 Y-VWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSP-NGTFLAYAQFNDT 193 (470)
T ss_dssp E-EETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECT-TSSEEEEEEEECT
T ss_pred E-eecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECC-CCCccceeEecCC
Confidence 6 457789999999887665442 123346688999 9999998876543
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.99 E-value=2e-09 Score=110.83 Aligned_cols=239 Identities=5% Similarity=-0.114 Sum_probs=132.7
Q ss_pred ccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEe-CCCcEEEEEeecCeeeeeecCCCC
Q 005352 215 DAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAG-DDGVVRLWQVVEDERLTEVDIPEI 293 (701)
Q Consensus 215 ~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs-~Dg~I~iWd~~~~~~~~~~~~~~~ 293 (701)
.+..|..++.|.+||.........-................++|+|||++|+.+. .++.|.+||+.+++.+..+..+..
T Consensus 88 ~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~ 167 (368)
T d1mdah_ 88 RSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASC 167 (368)
T ss_dssp TTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSC
T ss_pred cccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCc
Confidence 3445678899999987543211100000000000111224689999999998876 579999999999988877765432
Q ss_pred CCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCCeEEEEEC
Q 005352 294 DPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASI 373 (701)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~l~s~s~ 373 (701)
... ..... ...+.....+...+............ .....+..+...+....+.+++.++. ..
T Consensus 168 ~~~----~~~~~--~~~v~~~~Dg~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~g~~~~-~~ 229 (368)
T d1mdah_ 168 FHI----HPGAA--ATHYLGSCPASLAASDLAAAPAAAGI-----------VGAQCTGAQNCSSQAAQANYPGMLVW-AV 229 (368)
T ss_dssp CCC----EEEET--TEEECCCCTTSCEEEECCSSCCCCEE-----------CCCCSCTTSCBCSCCEEETTTTEEEE-CB
T ss_pred ceE----ccCCC--ceEEEEcCCCCEEEEEecCCceeeee-----------eecccccccccceeecccccCcEEEE-ec
Confidence 210 11100 01111111111111111111110000 00111223444455566677763222 23
Q ss_pred CCcEEEEECCCCeeeeeec-------------CCCCeEEEEEeeCCCCEEEEEEcC---------CcEEEEeCCCCcEEE
Q 005352 374 DKTVRLWRVGNDHCLRVFP-------------HSNYVTCVHFNPVDDNYFISGSID---------GKVRIWAVLSCHVVD 431 (701)
Q Consensus 374 dg~I~iWd~~~~~~~~~~~-------------h~~~V~~l~f~p~~~~~l~sgs~d---------g~v~iwd~~~~~~~~ 431 (701)
.+.+.++++..+....... .......++++| ++..++....+ ..|.+||..+++.+.
T Consensus 230 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~-~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~ 308 (368)
T d1mdah_ 230 ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLK-NTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSG 308 (368)
T ss_dssp SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEET-TTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEE
T ss_pred CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcC-CCCEEEEEecCCCceeecCCceEEEEECCCCcEeE
Confidence 4556666665554332221 112234578888 66666554322 258999999999887
Q ss_pred EecCCCcEEEEEEeeCCCe--EEEEecCCcEEEEECCCCeeee
Q 005352 432 WVDIRQIVTAVCYRPDGQG--GIVGSMMGDCRFYNVSDNHLEL 472 (701)
Q Consensus 432 ~~~~~~~i~~i~~sp~g~~--l~~gs~dg~v~i~d~~~~~~~~ 472 (701)
.......+..++|+|||+. ++++..++.|++||..+++...
T Consensus 309 ~~~~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~ 351 (368)
T d1mdah_ 309 PISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQS 351 (368)
T ss_dssp CCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEE
T ss_pred EecCCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEE
Confidence 7777778999999999974 3556678999999999987643
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.89 E-value=1.8e-07 Score=90.75 Aligned_cols=191 Identities=12% Similarity=0.022 Sum_probs=131.5
Q ss_pred eEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEE-ec
Q 005352 357 ILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDW-VD 434 (701)
Q Consensus 357 I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~-~~ 434 (701)
...+++.+++ .+++....+.+++++-.+...+.....-..+.++++.+ +++++++-..+..+..++......... ..
T Consensus 59 p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~~~~~p~~iavd~-~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~ 137 (260)
T d1rwia_ 59 PQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQTVLPFT 137 (260)
T ss_dssp CCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCCSCCSEEEEEECT-TCCEEEEEGGGTEEEEECTTCSSCEECCCC
T ss_pred ceEEEEcCCCCEEEeeeeeceeeeeeeccceeeeeeeeeeecccccccc-cceeEeeccccccccccccccceeeeeeec
Confidence 4567888888 55555555566666655555554444556789999998 888888776677788887765443322 22
Q ss_pred CCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEE
Q 005352 435 IRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRIL 514 (701)
Q Consensus 435 ~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iw 514 (701)
.......+++.|+++.+++...++.|..++........ ..........++++.+ ++.++++....+.|..+
T Consensus 138 ~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~--------~~~~~~~~p~gi~~d~-~g~l~vsd~~~~~i~~~ 208 (260)
T d1rwia_ 138 GLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVV--------LPFTDITAPWGIAVDE-AGTVYVTEHNTNQVVKL 208 (260)
T ss_dssp SCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEE--------CCCSSCCSEEEEEECT-TCCEEEEETTTTEEEEE
T ss_pred ccCCcceeeecCCCCEeeeccccccccccccccceeee--------eeccccCCCccceeee-eeeeeeeecCCCEEEEE
Confidence 23456789999999988888888999999987654321 1122334568899988 57777777778889888
Q ss_pred eCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEe
Q 005352 515 QGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWN 557 (701)
Q Consensus 515 d~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd 557 (701)
+.............-.....++++++|.++++-..+++|+..+
T Consensus 209 ~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~ 251 (260)
T d1rwia_ 209 LAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLT 251 (260)
T ss_dssp CTTCSCCEECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEEC
T ss_pred eCCCCeEEEEccCCCCCeEEEEEeCCCCEEEEECCCCEEEEEe
Confidence 8764443333333445678999999999888767677666554
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.89 E-value=4e-07 Score=93.08 Aligned_cols=302 Identities=10% Similarity=0.007 Sum_probs=160.9
Q ss_pred ccccc--ccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCC
Q 005352 216 AMFCS--KVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEI 293 (701)
Q Consensus 216 ~~~~~--~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~ 293 (701)
+++|+ ..+.|.++.++.....+..... ....+...+.-|+|+|++++|.++.. +.+..|.+.....+.......
T Consensus 5 l~vGtyt~~~~i~~~~fd~~~~~l~~~~~--~~~~~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~- 80 (365)
T d1jofa_ 5 LMIGTWTPPGAIFTVQFDDEKLTCKLIKR--TEIPQDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHP- 80 (365)
T ss_dssp EEEEESSSSCEEEEEEEETTTTEEEEEEE--EECCTTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEE-
T ss_pred EEEEeecCCCCEEEEEEcCCCCeEEEeee--eeccCCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeec-
Confidence 44553 3557888877765544432211 11224445667999999999988765 568888876532221110000
Q ss_pred CCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEE
Q 005352 294 DPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSAS 372 (701)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s 372 (701)
.. ..-..+..+..+... .+.....+...|....+.+++ ......
T Consensus 81 ---------~~-~~p~~v~~~~~~~~~-------------------------~v~~a~~~~~~v~~~~~~~~~~~~~~~~ 125 (365)
T d1jofa_ 81 ---------IG-GHPRANDADTNTRAI-------------------------FLLAAKQPPYAVYANPFYKFAGYGNVFS 125 (365)
T ss_dssp ---------CC-SSGGGGCTTSCCEEE-------------------------EEEECSSTTCCEEEEEESSSCCEEEEEE
T ss_pred ---------CC-CCcEEEEECCCCCEE-------------------------EEEEecCCCCEEEEeEccCCCCcceeEe
Confidence 00 000000111111000 011112244555555555554 222222
Q ss_pred CCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEc-CCcEEEEeCCCC-cEE-----EEecCCCcEEEEEEe
Q 005352 373 IDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSI-DGKVRIWAVLSC-HVV-----DWVDIRQIVTAVCYR 445 (701)
Q Consensus 373 ~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~-dg~v~iwd~~~~-~~~-----~~~~~~~~i~~i~~s 445 (701)
.+...++... ......+....+.++.|+| ++++++++.. ...|.+|+.... ... ...........++|+
T Consensus 126 ~~~~~~~~~~---~~~~~~q~~~h~h~v~~sP-dG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~ 201 (365)
T d1jofa_ 126 VSETGKLEKN---VQNYEYQENTGIHGMVFDP-TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMH 201 (365)
T ss_dssp ECTTCCEEEE---EEEEECCTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEEC
T ss_pred eeecceecCc---ccCcccCCCCcceEEEECC-CCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEEC
Confidence 2222222110 0001112344588999999 9998887764 357888876543 222 111234678999999
Q ss_pred eCCCeEEEEe-cCCcEEEEECCCCeeeeeeeEEeecc-----------cCCCCCCeeEEEEecCCCCEEEEEEC-CC---
Q 005352 446 PDGQGGIVGS-MMGDCRFYNVSDNHLELDAEICVHSK-----------KKAPCKRITGFQFLPQDSSKVMVSCA-DS--- 509 (701)
Q Consensus 446 p~g~~l~~gs-~dg~v~i~d~~~~~~~~~~~~~~~~~-----------~~~~~~~i~~l~~~p~~~~~l~~~s~-dg--- 509 (701)
|+++++++.. .++.|.+|++................ ..........+.++| ++++|+++.. +.
T Consensus 202 pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sp-dG~~lyvsnr~~~~~~ 280 (365)
T d1jofa_ 202 PTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTF-SGKYMFASSRANKFEL 280 (365)
T ss_dssp TTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECT-TSSEEEEEEEESSTTS
T ss_pred CCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECC-CCCEEEEEcccCCCcc
Confidence 9999886655 57889999997765432221111110 011122356788999 6777776643 22
Q ss_pred --cEEEEeCCcccee------eecccCCCCeEEEEEec-CCCEEEEE-eCCCcEEEEeCCCC
Q 005352 510 --QVRILQGPNVIGK------YKGLRRSGNQLSACFTS-DGKHIVSA-GEDSNVYMWNCIGH 561 (701)
Q Consensus 510 --~I~iwd~~~~~~~------~~~~~~~~~v~~l~~s~-dg~~l~sg-s~Dg~I~iWd~~~~ 561 (701)
.|..|++...... ............++++| +|++|+++ ..++.|.+|+++..
T Consensus 281 ~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~ 342 (365)
T d1jofa_ 281 QGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp CCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred ceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence 3777775532111 11112334567799998 89988777 46789999998654
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.86 E-value=6.3e-07 Score=88.94 Aligned_cols=226 Identities=12% Similarity=0.097 Sum_probs=151.6
Q ss_pred cEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCcc
Q 005352 252 SILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESA 331 (701)
Q Consensus 252 ~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (701)
.+..++++|||+++++...+++|..|+.....
T Consensus 29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~------------------------------------------------ 60 (302)
T d2p4oa1 29 FLENLASAPDGTIFVTNHEVGEIVSITPDGNQ------------------------------------------------ 60 (302)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTCCE------------------------------------------------
T ss_pred CcCCEEECCCCCEEEEeCCCCEEEEEeCCCCE------------------------------------------------
Confidence 47889999999999999989988777643221
Q ss_pred EEEcCCccccccCCCeEEEcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCC--ee--eeeecCCCCeEEEEEeeCC
Q 005352 332 CVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGND--HC--LRVFPHSNYVTCVHFNPVD 406 (701)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~--~~--~~~~~h~~~V~~l~f~p~~ 406 (701)
..+......+.+++|.+++ ++++...++.+.+|+.... .. +...........+++.+ +
T Consensus 61 ----------------~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~-~ 123 (302)
T d2p4oa1 61 ----------------QIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLS-D 123 (302)
T ss_dssp ----------------EEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESS-S
T ss_pred ----------------EEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEcc-C
Confidence 1112234568899999999 7777778888888876443 22 22223556789999999 8
Q ss_pred CCEEEEEEcCCcEEEEeCCCCcEEEEecC-----------CCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeee
Q 005352 407 DNYFISGSIDGKVRIWAVLSCHVVDWVDI-----------RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAE 475 (701)
Q Consensus 407 ~~~l~sgs~dg~v~iwd~~~~~~~~~~~~-----------~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~ 475 (701)
++++++-+.++.+..++...+........ ......+.+.. +..+++.+..+.|..+++..........
T Consensus 124 g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~ 202 (302)
T d2p4oa1 124 TQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVSNTEKMLLLRIPVDSTDKPGEPE 202 (302)
T ss_dssp SEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEEETTTTEEEEEEBCTTSCBCCCE
T ss_pred CCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC-CceeeecCCCCeEEeccccccccccccc
Confidence 98888888888999999887754432211 12355566543 3455556778888888887654332222
Q ss_pred EEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceee-ecccCCCCeEEEEE---ecCCCEEEEEeCC
Q 005352 476 ICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKY-KGLRRSGNQLSACF---TSDGKHIVSAGED 550 (701)
Q Consensus 476 ~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~-~~~~~~~~v~~l~~---s~dg~~l~sgs~D 550 (701)
.... .....++++.+ ++.++++...++.|..++.......+ .........++++| ++|++.|+.++..
T Consensus 203 ~~~~------~~~pdgia~d~-dG~l~va~~~~~~V~~i~p~G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~ 274 (302)
T d2p4oa1 203 IFVE------QTNIDDFAFDV-EGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG 274 (302)
T ss_dssp EEEE------SCCCSSEEEBT-TCCEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred cccC------CCCCcceEECC-CCCEEEEEcCCCcEEEECCCCCEEEEEecCCCCCCceEEEEcCCCCCCCEEEEECCC
Confidence 1111 13356799999 67888888889999999876433322 33334566899999 6688877766543
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.84 E-value=3.4e-06 Score=82.38 Aligned_cols=242 Identities=9% Similarity=0.100 Sum_probs=157.7
Q ss_pred cEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCcc
Q 005352 252 SILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESA 331 (701)
Q Consensus 252 ~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (701)
....|+++++|+++++-...+.|++||.+ ++.+..+......
T Consensus 24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~------------------------------------- 65 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKR------------------------------------- 65 (279)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSS-------------------------------------
T ss_pred CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCC-------------------------------------
Confidence 46799999999988887777889999854 4433332110000
Q ss_pred EEEcCCccccccCCCeEEEcCCccCeEEEEEecCC--eEEE-EECCCcEEEEECCCCeeeeeec--CCCCeEEEEEeeCC
Q 005352 332 CVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNN--YLLS-ASIDKTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVD 406 (701)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~--~l~s-~s~dg~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~~ 406 (701)
.+....-..+++.++. .+++ .+.++.|.+++. .+.....+. .......+++.+ +
T Consensus 66 -------------------~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~p~~~avd~-~ 124 (279)
T d1q7fa_ 66 -------------------DSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-YGQFVRKFGATILQHPRGVTVDN-K 124 (279)
T ss_dssp -------------------TTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-TSCEEEEECTTTCSCEEEEEECT-T
T ss_pred -------------------cccccccccccccccccccceeccCCccccccccc-cccceeecCCCcccccceecccc-C
Confidence 0111122334444443 3332 334556777765 455555554 446678999998 8
Q ss_pred CCEEEEEEcCCcEEEEeCCCCcEEEEe---cCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccC
Q 005352 407 DNYFISGSIDGKVRIWAVLSCHVVDWV---DIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKK 483 (701)
Q Consensus 407 ~~~l~sgs~dg~v~iwd~~~~~~~~~~---~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~ 483 (701)
+.++++....+.+.+++... +.+... .+......+++.++++.+++....+.|++|+.....+.. + ...
T Consensus 125 G~i~v~~~~~~~~~~~~~~g-~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G~~~~~---~----g~~ 196 (279)
T d1q7fa_ 125 GRIIVVECKVMRVIIFDQNG-NVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQ---I----GGE 196 (279)
T ss_dssp SCEEEEETTTTEEEEECTTS-CEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEE---E----SCT
T ss_pred CcEEEEeeccceeeEeccCC-ceeecccccccccccceeeeccceeEEeeeccccceeeeecCCceeee---e----ccc
Confidence 88888877778888888654 444433 234568889999999988888889999999987643211 1 112
Q ss_pred CCCCCeeEEEEecCCCCEEEEEEC-CCcEEEEeCCc-cceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 005352 484 APCKRITGFQFLPQDSSKVMVSCA-DSQVRILQGPN-VIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGH 561 (701)
Q Consensus 484 ~~~~~i~~l~~~p~~~~~l~~~s~-dg~I~iwd~~~-~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~ 561 (701)
.......++++.+ +++++++-.. +..|.+|+..- ....+...........+++.++|.+++ ++.+..|++|++...
T Consensus 197 g~~~~P~giavD~-~G~i~Vad~~~~~~v~~f~~~G~~~~~~~~~~~~~~p~~vav~~dG~l~V-~~~n~~v~~fr~~~~ 274 (279)
T d1q7fa_ 197 GITNYPIGVGINS-NGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVALMDDGSVVL-ASKDYRLYIYRYVQL 274 (279)
T ss_dssp TTSCSEEEEEECT-TCCEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEEEETTTEEEE-EETTTEEEEEECSCC
T ss_pred ccccCCccccccc-CCeEEEEECCCCcEEEEECCCCCEEEEEeCCCCCCCEeEEEEeCCCcEEE-EeCCCeEEEEEeeee
Confidence 3345678899999 5676666544 45799998642 233333333345678999999997555 567899999998876
Q ss_pred C
Q 005352 562 E 562 (701)
Q Consensus 562 ~ 562 (701)
.
T Consensus 275 ~ 275 (279)
T d1q7fa_ 275 A 275 (279)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.81 E-value=2.4e-06 Score=85.10 Aligned_cols=202 Identities=9% Similarity=0.062 Sum_probs=128.8
Q ss_pred CeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CC----CCeEEEEEeeCCCCEEEEEEc--------------
Q 005352 356 EILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HS----NYVTCVHFNPVDDNYFISGSI-------------- 415 (701)
Q Consensus 356 ~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~----~~V~~l~f~p~~~~~l~sgs~-------------- 415 (701)
.-..++|.+++ .++++...+.|...+........... .. ...+.+++.+ ++++.++-..
T Consensus 72 ~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~-~G~lyvtd~~~~~~~~~~~~~~~~ 150 (314)
T d1pjxa_ 72 IPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQE 150 (314)
T ss_dssp CEEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSS
T ss_pred cceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECC-CCCEEEecCccCcccccccceecc
Confidence 35678999998 77778777778888887654332222 11 2367899999 8888776432
Q ss_pred -CCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCC----eE-EEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCe
Q 005352 416 -DGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQ----GG-IVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRI 489 (701)
Q Consensus 416 -dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~----~l-~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i 489 (701)
.|.|..++.. ++.......-...+.++|+|++. .| ++-+..+.|..|++............. ..........
T Consensus 151 ~~G~v~~~~~d-g~~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~-~~~~~~~~~p 228 (314)
T d1pjxa_ 151 KFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWG-HIPGTHEGGA 228 (314)
T ss_dssp SCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEE-ECCCCSSCEE
T ss_pred CCceEEEEeec-CceeEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEE-Eccccccccc
Confidence 2344444443 34444444344567899999875 34 445678889999876443222221111 1112222345
Q ss_pred eEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCE-EEEEeCCCcEEEEeCCCC
Q 005352 490 TGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKH-IVSAGEDSNVYMWNCIGH 561 (701)
Q Consensus 490 ~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~-l~sgs~Dg~I~iWd~~~~ 561 (701)
.++++.+ +++++++....+.|.+||.................++++|.|+++. .+|.+.+|.|+..++...
T Consensus 229 dGiavD~-~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~ 300 (314)
T d1pjxa_ 229 DGMDFDE-DNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp EEEEEBT-TCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred eeeEEec-CCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCC
Confidence 6889988 6788888888999999997644333222224567899999999974 466677888888886543
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.71 E-value=8.2e-07 Score=88.11 Aligned_cols=201 Identities=8% Similarity=-0.024 Sum_probs=139.9
Q ss_pred CeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCC--cEEEE
Q 005352 356 EILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSC--HVVDW 432 (701)
Q Consensus 356 ~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~--~~~~~ 432 (701)
.+..+++.|+| ++++...+++|..|+.. ++..........+.+++|.| +++++++...++.+..|+.... .....
T Consensus 29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~-g~~~~~~~~~~~~~gla~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~~~ 106 (302)
T d2p4oa1 29 FLENLASAPDGTIFVTNHEVGEIVSITPD-GNQQIHATVEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTVETL 106 (302)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEEECSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred CcCCEEECCCCCEEEEeCCCCEEEEEeCC-CCEEEEEcCCCCcceEEEcC-CCCeEEEecCCceEEEEEecccccceeec
Confidence 57899999999 77777789999888855 44444455778899999999 9999999988888888876543 23222
Q ss_pred --ecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEe--ecccCCCCCCeeEEEEecCCCCEEEEEECC
Q 005352 433 --VDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICV--HSKKKAPCKRITGFQFLPQDSSKVMVSCAD 508 (701)
Q Consensus 433 --~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~--~~~~~~~~~~i~~l~~~p~~~~~l~~~s~d 508 (701)
.........+++.++++++++.+.++.+..++.............. .............+.+.. ..++++.+..
T Consensus 107 ~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~--~~l~~~~~~~ 184 (302)
T d2p4oa1 107 LTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG--NFLYVSNTEK 184 (302)
T ss_dssp EECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET--TEEEEEETTT
T ss_pred cccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC--CceeeecCCC
Confidence 2345668899999999998888889999999988775432211100 011112233456666643 4666777778
Q ss_pred CcEEEEeCCccceee--ecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 005352 509 SQVRILQGPNVIGKY--KGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIG 560 (701)
Q Consensus 509 g~I~iwd~~~~~~~~--~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~ 560 (701)
+.|+.++........ ...........++++++|+++++...++.|..++...
T Consensus 185 ~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G 238 (302)
T d2p4oa1 185 MLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDR 238 (302)
T ss_dssp TEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTC
T ss_pred CeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCC
Confidence 999988865322111 1111234456799999999888888899999997654
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.71 E-value=1.6e-05 Score=76.59 Aligned_cols=179 Identities=10% Similarity=0.014 Sum_probs=109.2
Q ss_pred EEcCCccCeEEEEEecCC-eEEEEE-CCCc--EEEEECCCCeeeeeecCCCCeEEEEEeeCCCCE-EEEEEcCCc--EEE
Q 005352 349 EFHGHSGEILDLSWSKNN-YLLSAS-IDKT--VRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNY-FISGSIDGK--VRI 421 (701)
Q Consensus 349 ~~~~h~~~I~~l~~s~~~-~l~s~s-~dg~--I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~-l~sgs~dg~--v~i 421 (701)
.+..+........|+|++ .++... .++. +..+.....................+++ ++.. +++...++. |.+
T Consensus 77 ~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~i~~ 155 (269)
T d2hqsa1 77 QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFP-DSQNLAFTSDQAGRPQVYK 155 (269)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECT-TSSEEEEEECTTSSCEEEE
T ss_pred EEeeeecccccceecCCCCeeeEeeecCCccceeecccccccceeeeecccccccccccc-ccccceecccccCCceEee
Confidence 344566778889999999 555443 3433 3333444444444444555556666777 5554 444444554 566
Q ss_pred EeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecCC---cEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCC
Q 005352 422 WAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMG---DCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQD 498 (701)
Q Consensus 422 wd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg---~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~ 498 (701)
.++..+................|+|+++.++..+.++ .+.+++........ ...........|+| +
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~----------~~~~~~~~~p~~SP-D 224 (269)
T d2hqsa1 156 VNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV----------LSSTFLDETPSLAP-N 224 (269)
T ss_dssp EETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEE----------CCCSSSCEEEEECT-T
T ss_pred eecccccceeeecccccccccccccccceeEEEeecCCceeeeEeecccccceE----------eecCccccceEECC-C
Confidence 6777776666666677788899999999988876654 34455555443321 11224456778999 6
Q ss_pred CCEEEEEEC---CCcEEEEeCCccceeeecccCCCCeEEEEEecC
Q 005352 499 SSKVMVSCA---DSQVRILQGPNVIGKYKGLRRSGNQLSACFTSD 540 (701)
Q Consensus 499 ~~~l~~~s~---dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~d 540 (701)
++.|+..+. ...|+++++..... .+.....+.+...+|+|-
T Consensus 225 G~~i~f~s~~~~~~~l~~~~~dg~~~-~~lt~~~g~~~~p~WSP~ 268 (269)
T d2hqsa1 225 GTMVIYSSSQGMGSVLNLVSTDGRFK-ARLPATDGQVKFPAWSPY 268 (269)
T ss_dssp SSEEEEEEEETTEEEEEEEETTSCCE-EECCCSSSEEEEEEECCC
T ss_pred CCEEEEEEcCCCCcEEEEEECCCCCE-EEEeCCCCcEEeEEeCCC
Confidence 776665443 34678888875433 233335567788899883
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.71 E-value=1.2e-05 Score=79.97 Aligned_cols=235 Identities=9% Similarity=0.039 Sum_probs=143.8
Q ss_pred CcEEEEEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCc
Q 005352 251 GSILTMKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSES 330 (701)
Q Consensus 251 ~~I~~l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (701)
..+..++|.++|++.++-...+.|..|+..+.+..
T Consensus 40 ~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~--------------------------------------------- 74 (319)
T d2dg1a1 40 LQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIK--------------------------------------------- 74 (319)
T ss_dssp CCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE---------------------------------------------
T ss_pred cCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEE---------------------------------------------
Confidence 34568999999987777777888877776554211
Q ss_pred cEEEcCCccccccCCCeEEEcCCccCeEEEEEecCCeEEEEE-C----CCcEEEEECCCCeeeeeec---CCCCeEEEEE
Q 005352 331 ACVVFPPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSAS-I----DKTVRLWRVGNDHCLRVFP---HSNYVTCVHF 402 (701)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~l~s~s-~----dg~I~iWd~~~~~~~~~~~---h~~~V~~l~f 402 (701)
..+.........|++.++|.|+.+. . .+.|...+........... ....+..+++
T Consensus 75 -----------------~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~ 137 (319)
T d2dg1a1 75 -----------------RPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVF 137 (319)
T ss_dssp -----------------EEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEE
T ss_pred -----------------EEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeE
Confidence 1112233456789999999444333 2 2335555555555444443 2345788999
Q ss_pred eeCCCCEEEEEEc------CCcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEE-ecCCcEEEEECCCCeeeeeee
Q 005352 403 NPVDDNYFISGSI------DGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVG-SMMGDCRFYNVSDNHLELDAE 475 (701)
Q Consensus 403 ~p~~~~~l~sgs~------dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g-s~dg~v~i~d~~~~~~~~~~~ 475 (701)
.+ ++++.++... .+.+..++...+.+......-...+.++|+|+++.|+++ +..+.|..|++..........
T Consensus 138 d~-~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~ 216 (319)
T d2dg1a1 138 DS-KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPF 216 (319)
T ss_dssp CT-TSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEE
T ss_pred Ee-ccceeecccccccccCcceeEEEecccceeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccc
Confidence 99 8887766432 133555665555444444444557889999999876554 567899999987543211111
Q ss_pred EEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCc-cceeeecc----cCCCCeEEEEEecCCCEEEEEeC
Q 005352 476 ICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPN-VIGKYKGL----RRSGNQLSACFTSDGKHIVSAGE 549 (701)
Q Consensus 476 ~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~-~~~~~~~~----~~~~~v~~l~~s~dg~~l~sgs~ 549 (701)
...............++++.+ ++++.++....+.|.+||... ....+... .+...+++++|.+++..+++...
T Consensus 217 ~~~~~~~~~~~~~PdGl~vD~-~G~l~Va~~~~g~V~~~~p~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~ 294 (319)
T d2dg1a1 217 GATIPYYFTGHEGPDSCCIDS-DDNLYVAMYGQGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN 294 (319)
T ss_dssp EEEEEEECCSSSEEEEEEEBT-TCCEEEEEETTTEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred cceeeeccCCccceeeeeEcC-CCCEEEEEcCCCEEEEECCCCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcC
Confidence 111111111223356899988 688888888899999999642 22222221 23446789999998877766543
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.63 E-value=1.1e-05 Score=77.75 Aligned_cols=203 Identities=13% Similarity=0.110 Sum_probs=128.4
Q ss_pred eEEEcCCccCeEEEEEecCC-eEEEEECCC---cEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcC-Cc--E
Q 005352 347 LHEFHGHSGEILDLSWSKNN-YLLSASIDK---TVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSID-GK--V 419 (701)
Q Consensus 347 ~~~~~~h~~~I~~l~~s~~~-~l~s~s~dg---~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~d-g~--v 419 (701)
...+..+...+...+||||| .|+-..... .+.+.+...+.......+........|+| ++..++..... +. +
T Consensus 31 ~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~i~~~~~~~~~~~~ 109 (269)
T d2hqsa1 31 QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSP-DGSKLAFALSKTGSLNL 109 (269)
T ss_dssp CEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECT-TSSEEEEEECTTSSCEE
T ss_pred cEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeeeecccccceecC-CCCeeeEeeecCCccce
Confidence 34444556778899999999 776554432 47777887777777777888899999999 88888776543 22 3
Q ss_pred EEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEe-cCC--cEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEec
Q 005352 420 RIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGS-MMG--DCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLP 496 (701)
Q Consensus 420 ~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs-~dg--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p 496 (701)
..+.....................+++++..++..+ .+| .|.++++....... ............|+|
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~---------~~~~~~~~~~~~~sp 180 (269)
T d2hqsa1 110 YVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQR---------ITWEGSQNQDADVSS 180 (269)
T ss_dssp EEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEE---------CCCSSSEEEEEEECT
T ss_pred eecccccccceeeeeccccccccccccccccceecccccCCceEeeeeccccccee---------eeccccccccccccc
Confidence 344444444555555556666677788777655544 344 35556665543221 122334566778999
Q ss_pred CCCCEEEEEE-CCCcEEEE--eCCccceeeecccCCCCeEEEEEecCCCEEEEEeC---CCcEEEEeCCCCC
Q 005352 497 QDSSKVMVSC-ADSQVRIL--QGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGE---DSNVYMWNCIGHE 562 (701)
Q Consensus 497 ~~~~~l~~~s-~dg~I~iw--d~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~---Dg~I~iWd~~~~~ 562 (701)
++..++..+ ..+...+| +....... ............|+|||++|+-.+. ...|++|+++++.
T Consensus 181 -dg~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~ 249 (269)
T d2hqsa1 181 -DGKFMVMVSSNGGQQHIAKQDLATGGVQ--VLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF 249 (269)
T ss_dssp -TSSEEEEEEECSSCEEEEEEETTTCCEE--ECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC
T ss_pred -ccceeEEEeecCCceeeeEeecccccce--EeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCC
Confidence 455555544 44454444 44433332 2235566778899999999875543 3568999998765
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.62 E-value=1.9e-06 Score=83.38 Aligned_cols=197 Identities=7% Similarity=-0.055 Sum_probs=132.8
Q ss_pred cCeEEEEEecCC-eEEE-EECCCcEEEEECCCCeeee-eecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEE
Q 005352 355 GEILDLSWSKNN-YLLS-ASIDKTVRLWRVGNDHCLR-VFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVD 431 (701)
Q Consensus 355 ~~I~~l~~s~~~-~l~s-~s~dg~I~iWd~~~~~~~~-~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~ 431 (701)
..-.+|++.++| .+++ .+..+.|..++........ .+........+++++ +++++++....+.+++++-.+...+.
T Consensus 14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~-~g~i~v~d~~~~~i~~~~~~~~~~~~ 92 (260)
T d1rwia_ 14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDFNNRVVTLAAGSNNQTVL 92 (260)
T ss_dssp CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECT-TCCEEEEETTTEEEEECTTCSCCEEC
T ss_pred CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcC-CCCEEEeeeeeceeeeeeeccceeee
Confidence 345789999998 3443 4455777777655443322 222334567899998 88888887777777777666555554
Q ss_pred EecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcE
Q 005352 432 WVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQV 511 (701)
Q Consensus 432 ~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I 511 (701)
.......+..+++.++++.+++-..+..+..++......... .........++++.+ ++.++++...++.|
T Consensus 93 ~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~--------~~~~~~~p~~i~~~~-~g~~~v~~~~~~~i 163 (260)
T d1rwia_ 93 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVL--------PFTGLNDPDGVAVDN-SGNVYVTDTDNNRV 163 (260)
T ss_dssp CCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEEC--------CCCSCCSCCEEEECT-TCCEEEEEGGGTEE
T ss_pred eeeeeeecccccccccceeEeeccccccccccccccceeeee--------eecccCCcceeeecC-CCCEeeeccccccc
Confidence 444446688999999998888777777787777765432211 111223457889998 67788888888999
Q ss_pred EEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 005352 512 RILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGH 561 (701)
Q Consensus 512 ~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~ 561 (701)
..++...................++++++|+++++....+.|+.++....
T Consensus 164 ~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~ 213 (260)
T d1rwia_ 164 VKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGST 213 (260)
T ss_dssp EEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCS
T ss_pred cccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCC
Confidence 99997754433333334566789999999998888888888888876543
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.44 E-value=8.6e-05 Score=72.66 Aligned_cols=187 Identities=14% Similarity=0.086 Sum_probs=121.7
Q ss_pred cCeEEEEEecCCeEEEEECCCcEEEEECCCCeeeeeec-----CCCCeEEEEEeeCCCCEEEEEEcC----CcEEEEeCC
Q 005352 355 GEILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP-----HSNYVTCVHFNPVDDNYFISGSID----GKVRIWAVL 425 (701)
Q Consensus 355 ~~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~-----h~~~V~~l~f~p~~~~~l~sgs~d----g~v~iwd~~ 425 (701)
..+.++++.+++.|+.++.+ -|.++|..+++...... ....++.+.+.| ++++.++.... +.-.+|.+.
T Consensus 59 ~~~~~i~~~~dg~l~va~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~-~G~iw~~~~~~~~~~~~g~l~~~~ 136 (295)
T d2ghsa1 59 FMGSALAKISDSKQLIASDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA 136 (295)
T ss_dssp SCEEEEEEEETTEEEEEETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE
T ss_pred CCcEEEEEecCCCEEEEEeC-ccEEeecccceeeEEeeeecCCCcccceeeEECC-CCCEEEEeccccccccceeEeeec
Confidence 45778888888855556665 58899999887654443 223578899999 88876665432 345677777
Q ss_pred CCcEEEEecCCCcEEEEEEeeCCCeEEE-EecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEE
Q 005352 426 SCHVVDWVDIRQIVTAVCYRPDGQGGIV-GSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMV 504 (701)
Q Consensus 426 ~~~~~~~~~~~~~i~~i~~sp~g~~l~~-gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~ 504 (701)
.++.......-...+.++|+++++.++. -+..+.|..|++.........................++++.. ++++.++
T Consensus 137 ~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~-~GnlWva 215 (295)
T d2ghsa1 137 KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDA-EGHIWNA 215 (295)
T ss_dssp TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECT-TSCEEEE
T ss_pred CCcEEEEeeccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcC-CCCEEee
Confidence 7776665555556789999999986655 4567889999876432211111111111122334567888877 6777777
Q ss_pred EECCCcEEEEeCCc-cceeeecccCCCCeEEEEEe-cCCCEEEE
Q 005352 505 SCADSQVRILQGPN-VIGKYKGLRRSGNQLSACFT-SDGKHIVS 546 (701)
Q Consensus 505 ~s~dg~I~iwd~~~-~~~~~~~~~~~~~v~~l~~s-~dg~~l~s 546 (701)
.-..+.|..||... ....+.. ....+++++|- ++.+.|+.
T Consensus 216 ~~~~g~V~~~dp~G~~~~~i~l--P~~~~T~~~FGG~d~~~Lyv 257 (295)
T d2ghsa1 216 RWGEGAVDRYDTDGNHIARYEV--PGKQTTCPAFIGPDASRLLV 257 (295)
T ss_dssp EETTTEEEEECTTCCEEEEEEC--SCSBEEEEEEESTTSCEEEE
T ss_pred eeCCCceEEecCCCcEeeEecC--CCCceEEEEEeCCCCCEEEE
Confidence 77788999999642 2233332 34578999996 66665543
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.25 E-value=0.00021 Score=70.51 Aligned_cols=199 Identities=8% Similarity=0.042 Sum_probs=123.2
Q ss_pred CccCeEEEEEecCCeEEEEEC--------CCcEEEEECCCCeeeeeec-----CCCCeEEEEEeeCCCCEEEEEEcCCcE
Q 005352 353 HSGEILDLSWSKNNYLLSASI--------DKTVRLWRVGNDHCLRVFP-----HSNYVTCVHFNPVDDNYFISGSIDGKV 419 (701)
Q Consensus 353 h~~~I~~l~~s~~~~l~s~s~--------dg~I~iWd~~~~~~~~~~~-----h~~~V~~l~f~p~~~~~l~sgs~dg~v 419 (701)
.-.....++|.++|.|+..+. ++.|..||..++....... ..+....++|.+ +++.++++...+.|
T Consensus 16 ~~~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~-dg~~l~vad~~~~i 94 (314)
T d1pjxa_ 16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDR-DANQLFVADMRLGL 94 (314)
T ss_dssp CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECS-SSSEEEEEETTTEE
T ss_pred CCCCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeC-CCCEEEEEECCCeE
Confidence 334466789999993333322 4678899988876544332 123467899999 88888888777778
Q ss_pred EEEeCCCCcEEEEecC-C----CcEEEEEEeeCCCeEEEEec---------------CCcEEEEECCCCeeeeeeeEEee
Q 005352 420 RIWAVLSCHVVDWVDI-R----QIVTAVCYRPDGQGGIVGSM---------------MGDCRFYNVSDNHLELDAEICVH 479 (701)
Q Consensus 420 ~iwd~~~~~~~~~~~~-~----~~i~~i~~sp~g~~l~~gs~---------------dg~v~i~d~~~~~~~~~~~~~~~ 479 (701)
..++............ . ...+.+++.++|+..++-.. .|.|..++..........
T Consensus 95 ~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~~~~~~~----- 169 (314)
T d1pjxa_ 95 LVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVDT----- 169 (314)
T ss_dssp EEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEEE-----
T ss_pred EEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecCceeEeeC-----
Confidence 8899876543322211 1 13577999999987776432 234444444332211110
Q ss_pred cccCCCCCCeeEEEEecCCC----CEEEEEECCCcEEEEeCCccce-----eeecc--cCCCCeEEEEEecCCCEEEEEe
Q 005352 480 SKKKAPCKRITGFQFLPQDS----SKVMVSCADSQVRILQGPNVIG-----KYKGL--RRSGNQLSACFTSDGKHIVSAG 548 (701)
Q Consensus 480 ~~~~~~~~~i~~l~~~p~~~----~~l~~~s~dg~I~iwd~~~~~~-----~~~~~--~~~~~v~~l~~s~dg~~l~sgs 548 (701)
.....++++|+|+.. .++++-+..+.|..||+..... .+... ......-.+++..+|++.++..
T Consensus 170 -----~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~ 244 (314)
T d1pjxa_ 170 -----AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANW 244 (314)
T ss_dssp -----EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEE
T ss_pred -----CcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEc
Confidence 012346899998432 2445556688899988642211 11111 1223456899999999888888
Q ss_pred CCCcEEEEeCCCCC
Q 005352 549 EDSNVYMWNCIGHE 562 (701)
Q Consensus 549 ~Dg~I~iWd~~~~~ 562 (701)
..+.|++|+.+++.
T Consensus 245 ~~g~I~~~dp~~g~ 258 (314)
T d1pjxa_ 245 GSSHIEVFGPDGGQ 258 (314)
T ss_dssp TTTEEEEECTTCBS
T ss_pred CCCEEEEEeCCCCE
Confidence 88999999977654
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.23 E-value=0.00017 Score=69.82 Aligned_cols=194 Identities=10% Similarity=0.115 Sum_probs=129.7
Q ss_pred cCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeecC-------CCCeEEEEEeeCCCCEEEEEE-cCCcEEEEeCC
Q 005352 355 GEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFPH-------SNYVTCVHFNPVDDNYFISGS-IDGKVRIWAVL 425 (701)
Q Consensus 355 ~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~h-------~~~V~~l~f~p~~~~~l~sgs-~dg~v~iwd~~ 425 (701)
..-..|++.+++ .+++-..+..|++||.. ++.+..+.. ......+++.+..+.++++.. .++.|..++..
T Consensus 23 ~~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 101 (279)
T d1q7fa_ 23 TEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY 101 (279)
T ss_dssp SCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT
T ss_pred CCccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCcccccccccc
Confidence 346799999998 66665677889999964 667766641 123556776663344444433 44567777764
Q ss_pred CCcEEEEec--CCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEE
Q 005352 426 SCHVVDWVD--IRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVM 503 (701)
Q Consensus 426 ~~~~~~~~~--~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~ 503 (701)
+....... .......+++.++|+.+++....+.+.+++....... . + ....+......+++.+ ++.+++
T Consensus 102 -g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~~~~-~--~----g~~~~~~~~~~i~~d~-~g~i~v 172 (279)
T d1q7fa_ 102 -GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLH-K--F----GCSKHLEFPNGVVVND-KQEIFI 172 (279)
T ss_dssp -SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEE-E--E----ECTTTCSSEEEEEECS-SSEEEE
T ss_pred -ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCCceee-c--c----cccccccccceeeecc-ceeEEe
Confidence 44444332 3456788999999998888888888888887653221 1 1 1223456678888888 677888
Q ss_pred EEECCCcEEEEeCCcc-ceeeecccCCCCeEEEEEecCCCEEEEEeC-CCcEEEEeC
Q 005352 504 VSCADSQVRILQGPNV-IGKYKGLRRSGNQLSACFTSDGKHIVSAGE-DSNVYMWNC 558 (701)
Q Consensus 504 ~~s~dg~I~iwd~~~~-~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~-Dg~I~iWd~ 558 (701)
+....+.|++||.... ...+...........++++++|+.+++-.. ++.|.+|+.
T Consensus 173 ~d~~~~~V~~~d~~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~ 229 (279)
T d1q7fa_ 173 SDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ 229 (279)
T ss_dssp EEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT
T ss_pred eeccccceeeeecCCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC
Confidence 8888999999997632 222222234456789999999997777544 456999984
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.13 E-value=0.00068 Score=66.83 Aligned_cols=200 Identities=10% Similarity=0.072 Sum_probs=128.4
Q ss_pred EcCCccCeEEEEEecCC-eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEc----CCcEEEEe
Q 005352 350 FHGHSGEILDLSWSKNN-YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSI----DGKVRIWA 423 (701)
Q Consensus 350 ~~~h~~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~----dg~v~iwd 423 (701)
+......+..++|.++| ++++-...+.|..|+...++....+. .......+++.+ +++++++... .+.+...+
T Consensus 35 ~~~~~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~-dG~l~va~~~~~~~~~~i~~~~ 113 (319)
T d2dg1a1 35 ISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAAT 113 (319)
T ss_dssp EESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEEC
T ss_pred eccCCcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECC-CCCEEEEecCCCccceeEEEEc
Confidence 33344456789999998 55566678899999988876655543 556789999999 8888877543 23455566
Q ss_pred CCCCcEEEEecC---CCcEEEEEEeeCCCeEEEEec------CCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEE
Q 005352 424 VLSCHVVDWVDI---RQIVTAVCYRPDGQGGIVGSM------MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQF 494 (701)
Q Consensus 424 ~~~~~~~~~~~~---~~~i~~i~~sp~g~~l~~gs~------dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 494 (701)
............ ...+..+++.++|++.++... .+.+..++.......... . .....++++|
T Consensus 114 ~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~----~-----~~~~pnGia~ 184 (319)
T d2dg1a1 114 ENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII----Q-----NISVANGIAL 184 (319)
T ss_dssp TTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEE----E-----EESSEEEEEE
T ss_pred CCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEe----e-----ccceeeeeee
Confidence 666555443332 345788999999986655332 123555554433322110 0 1133578999
Q ss_pred ecCCCCEEEEEECCCcEEEEeCCccce---e-----eecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 005352 495 LPQDSSKVMVSCADSQVRILQGPNVIG---K-----YKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCI 559 (701)
Q Consensus 495 ~p~~~~~l~~~s~dg~I~iwd~~~~~~---~-----~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~ 559 (701)
+|+...++++-+..+.|+.|++..... . ..........-.+++.++|++.++....+.|.+|+-+
T Consensus 185 s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~ 257 (319)
T d2dg1a1 185 STDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR 257 (319)
T ss_dssp CTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred ccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECCC
Confidence 994434556666789999998652111 0 1111122335689999999988888889999999953
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.07 E-value=0.00014 Score=73.52 Aligned_cols=160 Identities=10% Similarity=0.063 Sum_probs=101.6
Q ss_pred cCeEEEEEecCC-eEEEEEC-CCcEEEEECCCCeeee---ee---cCCCCeEEEEEeeCCCCEEEEEE-cCCcEEEEeCC
Q 005352 355 GEILDLSWSKNN-YLLSASI-DKTVRLWRVGNDHCLR---VF---PHSNYVTCVHFNPVDDNYFISGS-IDGKVRIWAVL 425 (701)
Q Consensus 355 ~~I~~l~~s~~~-~l~s~s~-dg~I~iWd~~~~~~~~---~~---~h~~~V~~l~f~p~~~~~l~sgs-~dg~v~iwd~~ 425 (701)
..+.++.|+|+| +++++.. ...|.+|+......+. .. ........++|+| +++++++.. .+++|.+|++.
T Consensus 145 ~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~p-dg~~~yv~~e~~~~V~v~~~~ 223 (365)
T d1jofa_ 145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHP-TGNYLYALMEAGNRICEYVID 223 (365)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEEC
T ss_pred CcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECC-CCceEEEeccCCCEEEEEEec
Confidence 347899999999 6766654 4578888765432221 11 2456789999999 888775554 67889999987
Q ss_pred CCcEEEEe--------------------cCCCcEEEEEEeeCCCeEEEEec------CCcEEEEECCCCeeeeeeeEEee
Q 005352 426 SCHVVDWV--------------------DIRQIVTAVCYRPDGQGGIVGSM------MGDCRFYNVSDNHLELDAEICVH 479 (701)
Q Consensus 426 ~~~~~~~~--------------------~~~~~i~~i~~sp~g~~l~~gs~------dg~v~i~d~~~~~~~~~~~~~~~ 479 (701)
........ ........+.++|+|++|+++.. .+.|..|++......... ....
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~-~~~~ 302 (365)
T d1jofa_ 224 PATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQ-LFLS 302 (365)
T ss_dssp TTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEE-EEEE
T ss_pred CCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeE-eEee
Confidence 65422111 01123567899999999988743 233777877654322111 1111
Q ss_pred cccCCCCCCeeEEEEecCCCCEEEEE-ECCCcEEEEeCC
Q 005352 480 SKKKAPCKRITGFQFLPQDSSKVMVS-CADSQVRILQGP 517 (701)
Q Consensus 480 ~~~~~~~~~i~~l~~~p~~~~~l~~~-s~dg~I~iwd~~ 517 (701)
. .........+++++|.++++|+++ ..++.|.+|+..
T Consensus 303 ~-~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~ 340 (365)
T d1jofa_ 303 P-TPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWK 340 (365)
T ss_dssp E-CSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEE
T ss_pred E-EEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEe
Confidence 1 122234456789998667777666 457999999764
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.90 E-value=0.00037 Score=72.73 Aligned_cols=164 Identities=11% Similarity=0.060 Sum_probs=83.2
Q ss_pred CeEEEEEeeCCCCEEEEEEc-C---CcEEEEeCCCCcEEEEec--CCCc----EEEEEEeeCCCeEEE---EecCC--cE
Q 005352 396 YVTCVHFNPVDDNYFISGSI-D---GKVRIWAVLSCHVVDWVD--IRQI----VTAVCYRPDGQGGIV---GSMMG--DC 460 (701)
Q Consensus 396 ~V~~l~f~p~~~~~l~sgs~-d---g~v~iwd~~~~~~~~~~~--~~~~----i~~i~~sp~g~~l~~---gs~dg--~v 460 (701)
.+..+.|.| ++++++.... + ..|.++|..++++..... .... -....|+|+|+.++. .-.+| .+
T Consensus 256 y~~~~~W~~-d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~l 334 (465)
T d1xfda1 256 YITMVKWAT-STKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKF 334 (465)
T ss_dssp EEEEEEESS-SSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCE
T ss_pred eeeeeEEcC-CCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCce
Confidence 577889998 7766555432 2 248889999987664432 1221 234678899985432 22233 34
Q ss_pred EEEECCCCeeeeeeeEEeecccCCCCCCeeEE-EEecCCCCEEEEEECCC--cEEEEe--CCcc--ceeee-cccCCCCe
Q 005352 461 RFYNVSDNHLELDAEICVHSKKKAPCKRITGF-QFLPQDSSKVMVSCADS--QVRILQ--GPNV--IGKYK-GLRRSGNQ 532 (701)
Q Consensus 461 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l-~~~p~~~~~l~~~s~dg--~I~iwd--~~~~--~~~~~-~~~~~~~v 532 (701)
..+.+.......... .........-.|..+ .|.+..+.+++++..++ .-++|. +... ...+. ........
T Consensus 335 y~~~~~~~~~~~~~~--~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~ 412 (465)
T d1xfda1 335 YHITVSSSQPNSSND--NIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTY 412 (465)
T ss_dssp EEEEEECSSCCSSSC--CCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCC
T ss_pred EEEEeccccccCCCc--eeEEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcceeeccccCCCCCE
Confidence 433332111000000 000011122334554 57774444555554432 333443 3221 11111 11234466
Q ss_pred EEEEEecCCCEEEEEeCC---CcEEEEeCCCCC
Q 005352 533 LSACFTSDGKHIVSAGED---SNVYMWNCIGHE 562 (701)
Q Consensus 533 ~~l~~s~dg~~l~sgs~D---g~I~iWd~~~~~ 562 (701)
.++.|||++++++..... -.+.+++..+++
T Consensus 413 ~~~~~S~~~~y~v~~~s~~~~P~~~~~~~~~~~ 445 (465)
T d1xfda1 413 FSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKK 445 (465)
T ss_dssp CEEEECTTSSEEEEECCSSSSCCEEEEETTTCC
T ss_pred EEEEECCCCCEEEEEeecCCCCeEEEEECCCCC
Confidence 789999999999855432 457888876665
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.88 E-value=0.00012 Score=70.44 Aligned_cols=195 Identities=12% Similarity=0.066 Sum_probs=98.7
Q ss_pred EcCCccCeEEEEEecCC-eEEEE-ECCC-----cEEEEECCCCeeeeeecC-------CCCeEEEEEeeCCCCEEEEEEc
Q 005352 350 FHGHSGEILDLSWSKNN-YLLSA-SIDK-----TVRLWRVGNDHCLRVFPH-------SNYVTCVHFNPVDDNYFISGSI 415 (701)
Q Consensus 350 ~~~h~~~I~~l~~s~~~-~l~s~-s~dg-----~I~iWd~~~~~~~~~~~h-------~~~V~~l~f~p~~~~~l~sgs~ 415 (701)
+..+.+.+...+||||| .|+-. ..++ .|.+++..+++......+ ........|+| +++.|+....
T Consensus 36 Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~ 114 (281)
T d1k32a2 36 IVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDP-DGNLIISTDA 114 (281)
T ss_dssp EECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECT-TCCEEEEECT
T ss_pred EecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCC-CCCEEEEEEc
Confidence 34456678889999999 66543 3222 377788888876654332 23456788999 8888876543
Q ss_pred C------CcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEE-ecCCc-----------EEEEECCCCeeeeeeeEE
Q 005352 416 D------GKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVG-SMMGD-----------CRFYNVSDNHLELDAEIC 477 (701)
Q Consensus 416 d------g~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g-s~dg~-----------v~i~d~~~~~~~~~~~~~ 477 (701)
. ..+...+...+...... ...... .+.+++..++.. ..... ...+........
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 185 (281)
T d1k32a2 115 MQPFSSMTCLYRVENDGINFVPLN--LGPATH-ILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFK------ 185 (281)
T ss_dssp TSSSTTCCEEEEEEGGGTEEEECC--SCSCSE-EEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEE------
T ss_pred cCCCccceeeeeecCCCceeEEec--CCccce-eeecCCCeEEEeeccccceeeeeccCCcceeeeecccccee------
Confidence 2 22445555544433222 112222 233444333332 21110 111111111100
Q ss_pred eecccCCCCCCeeEEEEecCCCCEEEEEEC--CCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCcEEE
Q 005352 478 VHSKKKAPCKRITGFQFLPQDSSKVMVSCA--DSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSNVYM 555 (701)
Q Consensus 478 ~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~--dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~i 555 (701)
.............+.+ ...+..... ...|.++|+.......... ........|+|||+.|+.. .++.|++
T Consensus 186 ---~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~d~~g~~~~~lt~--~~~~~~~~~SpDG~~I~f~-~~~~l~~ 257 (281)
T d1k32a2 186 ---KIVDMSTHVSSPVIVG--HRIYFITDIDGFGQIYSTDLDGKDLRKHTS--FTDYYPRHLNTDGRRILFS-KGGSIYI 257 (281)
T ss_dssp ---EEECCSSCCEEEEEET--TEEEEEECTTSSCEEEEEETTSCSCEECCC--CCSSCEEEEEESSSCEEEE-ETTEEEE
T ss_pred ---eccCCccccceeeeec--cccceecccccccceEEEeCCCCceEEeec--CCCcccccCcCCCCEEEEE-eCCEEEE
Confidence 0111112233344444 233333333 3456777776443322211 1222234689999988764 4688999
Q ss_pred EeCCCCC
Q 005352 556 WNCIGHE 562 (701)
Q Consensus 556 Wd~~~~~ 562 (701)
+|+++++
T Consensus 258 ~d~~~g~ 264 (281)
T d1k32a2 258 FNPDTEK 264 (281)
T ss_dssp ECTTTCC
T ss_pred EECCCCC
Confidence 9998887
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.81 E-value=0.00025 Score=74.10 Aligned_cols=188 Identities=10% Similarity=0.060 Sum_probs=109.7
Q ss_pred CeEEEEEecCC-eEEEEE---------CCCcEEEEECCCCeeeeeec---CCCCeEEEEEeeCCCCEEEEEEcCCcEEEE
Q 005352 356 EILDLSWSKNN-YLLSAS---------IDKTVRLWRVGNDHCLRVFP---HSNYVTCVHFNPVDDNYFISGSIDGKVRIW 422 (701)
Q Consensus 356 ~I~~l~~s~~~-~l~s~s---------~dg~I~iWd~~~~~~~~~~~---h~~~V~~l~f~p~~~~~l~sgs~dg~v~iw 422 (701)
.+....|||++ +++... ..+.+.++|+.++....... ....+....|+| +++.||-.. ++.|.+.
T Consensus 62 ~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSP-DG~~iafv~-~~nl~~~ 139 (465)
T d1xfda1 62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGP-KGQQLIFIF-ENNIYYC 139 (465)
T ss_dssp TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCS-STTCEEEEE-TTEEEEE
T ss_pred ccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeecc-CCceEEEEe-cceEEEE
Confidence 45567889998 655543 35678999999887654433 344566788999 999988876 6789999
Q ss_pred eCCCCcEEEEecC--CCc-----------------EEEEEEeeCCCeEEEEec-CCcEEEEECCCCeeeeeeeEEeeccc
Q 005352 423 AVLSCHVVDWVDI--RQI-----------------VTAVCYRPDGQGGIVGSM-MGDCRFYNVSDNHLELDAEICVHSKK 482 (701)
Q Consensus 423 d~~~~~~~~~~~~--~~~-----------------i~~i~~sp~g~~l~~gs~-dg~v~i~d~~~~~~~~~~~~~~~~~~ 482 (701)
+..++..++.... ... -.++-|+|||+.|+.... +..+..|.+....
T Consensus 140 ~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~------------- 206 (465)
T d1xfda1 140 AHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYT------------- 206 (465)
T ss_dssp SSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCS-------------
T ss_pred ecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeeccccc-------------
Confidence 8887765544321 111 256789999999998754 3445555443210
Q ss_pred CCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeec------ccCCCCeEEEEEecCCCEEEEEeC-C---Cc
Q 005352 483 KAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKG------LRRSGNQLSACFTSDGKHIVSAGE-D---SN 552 (701)
Q Consensus 483 ~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~------~~~~~~v~~l~~s~dg~~l~sgs~-D---g~ 552 (701)
......+..+.+-. -+..- ....+.++|+......... ......+..+.|++++++++.... + ..
T Consensus 207 ~~~~p~~~~~~Yp~-~G~~n----p~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~ 281 (465)
T d1xfda1 207 GSIYPTVKPYHYPK-AGSEN----PSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSI 281 (465)
T ss_dssp SSSSCCCEEEECCB-TTSCC----CEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEE
T ss_pred ccccceeeeeeccc-cCCCC----CceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccce
Confidence 00001112222211 00000 0124666776533222211 112334778999999987666432 2 35
Q ss_pred EEEEeCCCCCC
Q 005352 553 VYMWNCIGHEE 563 (701)
Q Consensus 553 I~iWd~~~~~~ 563 (701)
|.++|..+++.
T Consensus 282 i~~~d~~tg~~ 292 (465)
T d1xfda1 282 LTLCDATTGVC 292 (465)
T ss_dssp EEEEETTTCCE
T ss_pred EEEEcCCCCcE
Confidence 88888888763
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.72 E-value=0.011 Score=57.04 Aligned_cols=188 Identities=9% Similarity=0.040 Sum_probs=125.6
Q ss_pred EEEEecC-CeE-EEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCC
Q 005352 359 DLSWSKN-NYL-LSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIR 436 (701)
Q Consensus 359 ~l~~s~~-~~l-~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~ 436 (701)
...|.+. +.| .+=-..+.|..||..+++. ..+.....+.++++.+ ++.++++ +.+ .|.++|..+++...+....
T Consensus 22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~-~~~~~~~~~~~i~~~~-dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~ 97 (295)
T d2ghsa1 22 GPTFDPASGTAWWFNILERELHELHLASGRK-TVHALPFMGSALAKIS-DSKQLIA-SDD-GLFLRDTATGVLTLHAELE 97 (295)
T ss_dssp EEEEETTTTEEEEEEGGGTEEEEEETTTTEE-EEEECSSCEEEEEEEE-TTEEEEE-ETT-EEEEEETTTCCEEEEECSS
T ss_pred CCeEECCCCEEEEEECCCCEEEEEECCCCeE-EEEECCCCcEEEEEec-CCCEEEE-EeC-ccEEeecccceeeEEeeee
Confidence 4568764 444 4444678899999988865 3556677889999988 7766654 444 5899999998876554322
Q ss_pred -----CcEEEEEEeeCCCeEEEEec----CCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEEC
Q 005352 437 -----QIVTAVCYRPDGQGGIVGSM----MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCA 507 (701)
Q Consensus 437 -----~~i~~i~~sp~g~~l~~gs~----dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~ 507 (701)
..++.+.+.|+|+..++... .+.-.+|.+..++..... . .....+.+.|+++...++++-+.
T Consensus 98 ~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~----~-----~~~~~Ng~~~s~d~~~l~~~dt~ 168 (295)
T d2ghsa1 98 SDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLF----A-----DISIPNSICFSPDGTTGYFVDTK 168 (295)
T ss_dssp TTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEE----E-----EESSEEEEEECTTSCEEEEEETT
T ss_pred cCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEe----e-----ccCCcceeeecCCCceEEEeecc
Confidence 24788999999987665433 234566766666543211 0 11335789999955556666677
Q ss_pred CCcEEEEeCCcc-------ceee-ecccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCC
Q 005352 508 DSQVRILQGPNV-------IGKY-KGLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCI 559 (701)
Q Consensus 508 dg~I~iwd~~~~-------~~~~-~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~ 559 (701)
.+.|..|++... ...+ .........-.+++..+|++.++.-..+.|..|+.+
T Consensus 169 ~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~ 228 (295)
T d2ghsa1 169 VNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD 228 (295)
T ss_dssp TCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT
T ss_pred cceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecCC
Confidence 889999886421 1111 112234567889999999988887778899999954
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.54 E-value=0.0037 Score=62.17 Aligned_cols=201 Identities=15% Similarity=0.167 Sum_probs=123.1
Q ss_pred EEEEec---CC-eEEEE-ECCCcEEEEECCCCeeeeee--cCCCCeEEEEEeeC-CCCEEEEEEcC--------------
Q 005352 359 DLSWSK---NN-YLLSA-SIDKTVRLWRVGNDHCLRVF--PHSNYVTCVHFNPV-DDNYFISGSID-------------- 416 (701)
Q Consensus 359 ~l~~s~---~~-~l~s~-s~dg~I~iWd~~~~~~~~~~--~h~~~V~~l~f~p~-~~~~l~sgs~d-------------- 416 (701)
.+++.. || +|+.. ..+..|.+-|+.+.++.+.. .....+..+...+. +..|++.++..
T Consensus 89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~ 168 (459)
T d1fwxa2 89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV 168 (459)
T ss_dssp EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence 444443 56 55544 46789999999999987754 45556776665431 45577776653
Q ss_pred ----CcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecCC---------------cEEEEECCC-------Cee
Q 005352 417 ----GKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMG---------------DCRFYNVSD-------NHL 470 (701)
Q Consensus 417 ----g~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg---------------~v~i~d~~~-------~~~ 470 (701)
+.+.++|..+.++............+.++|+|+++++.+.+. .+.+++... ++.
T Consensus 169 ~~y~~~~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~ 248 (459)
T d1fwxa2 169 ANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDY 248 (459)
T ss_dssp G-EEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCS
T ss_pred hhcceEEEEEecCCceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCc
Confidence 236778999888876666666778899999999999987532 133343310 000
Q ss_pred eeeeeEEeeccc----------CCCCCCeeEEEEecCCCCEEEEEEC-CCcEEEEeCCccceeee-----------cccC
Q 005352 471 ELDAEICVHSKK----------KAPCKRITGFQFLPQDSSKVMVSCA-DSQVRILQGPNVIGKYK-----------GLRR 528 (701)
Q Consensus 471 ~~~~~~~~~~~~----------~~~~~~i~~l~~~p~~~~~l~~~s~-dg~I~iwd~~~~~~~~~-----------~~~~ 528 (701)
.......+.... ..-.....++.++| ++.++++++. +.++.|+|+.+....+. ....
T Consensus 249 ~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSP-DGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~el 327 (459)
T d1fwxa2 249 QELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAP-DKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL 327 (459)
T ss_dssp EEETTEEEEECSGG--CSSEEEEEEESSCCCEEECT-TSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBC
T ss_pred EEeCCceeecccccCCcceeEEEecCCCCCceEECC-CCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeeccc
Confidence 000000000000 00112345788999 5666666555 99999999874332221 1113
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q 005352 529 SGNQLSACFTSDGKHIVSAGEDSNVYMWNCIG 560 (701)
Q Consensus 529 ~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~ 560 (701)
.......+|+..|....|---|+.|.-|++..
T Consensus 328 glgPLht~fd~~g~aytslfids~v~kw~~~~ 359 (459)
T d1fwxa2 328 GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED 359 (459)
T ss_dssp CSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred CcCccccccCCCceEEEEeeccceEEEEecch
Confidence 34556788988886556666899999999853
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.41 E-value=0.0081 Score=56.74 Aligned_cols=52 Identities=21% Similarity=0.292 Sum_probs=34.2
Q ss_pred eecC--ccccccccccceEEEEEccCccchhhhcccCceeccCCCcEEEEEEccCCCEEEEEe
Q 005352 209 VRLN--EEDAMFCSKVQRVKVYHCKKRSKELSALYKGQEIQAHDGSILTMKFSPDGQYLASAG 269 (701)
Q Consensus 209 ~~~~--~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~~l~~H~~~I~~l~fspdg~~Lasgs 269 (701)
++++ ++.+++.+ ++.|.+.++..... +.|..+.+.+...+|||||++||-..
T Consensus 6 ~sPdi~G~~v~f~~-~~dl~~~d~~~g~~--------~~Lt~~~~~~~~p~~SPDG~~iaf~~ 59 (281)
T d1k32a2 6 LNPDIHGDRIIFVC-CDDLWEHDLKSGST--------RKIVSNLGVINNARFFPDGRKIAIRV 59 (281)
T ss_dssp EEEEEETTEEEEEE-TTEEEEEETTTCCE--------EEEECSSSEEEEEEECTTSSEEEEEE
T ss_pred cCCCCCCCEEEEEe-CCcEEEEECCCCCE--------EEEecCCCcccCEEECCCCCEEEEEE
Confidence 3455 66666653 45566666554322 23455778899999999999998653
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.38 E-value=0.0029 Score=62.90 Aligned_cols=140 Identities=11% Similarity=-0.027 Sum_probs=83.8
Q ss_pred EEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcC--------------------------------------Cc
Q 005352 377 VRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSID--------------------------------------GK 418 (701)
Q Consensus 377 I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~d--------------------------------------g~ 418 (701)
+.++|..+.+......-......+.++| +++++++.+.+ +.
T Consensus 175 ~t~ID~~tm~V~~QV~V~g~ld~~~~s~-dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eing 253 (459)
T d1fwxa2 175 FTAVDADKWEVAWQVLVSGNLDNCDADY-EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNG 253 (459)
T ss_dssp EEEEETTTTEEEEEEEESSCCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETT
T ss_pred EEEEecCCceEEEEeeeCCChhccccCC-CCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCC
Confidence 5567877777777666555667788888 78887776643 12
Q ss_pred EEEEeCCCC---cEEEEecCCCcEEEEEEeeCCCeEEEEec-CCcEEEEECCCCeeeeeeeE----EeecccCCCCCCee
Q 005352 419 VRIWAVLSC---HVVDWVDIRQIVTAVCYRPDGQGGIVGSM-MGDCRFYNVSDNHLELDAEI----CVHSKKKAPCKRIT 490 (701)
Q Consensus 419 v~iwd~~~~---~~~~~~~~~~~i~~i~~sp~g~~l~~gs~-dg~v~i~d~~~~~~~~~~~~----~~~~~~~~~~~~i~ 490 (701)
+.+-|.+.. ..+..+........+.++|||+++++++. +.++.++|++.-........ .+.. .......-.
T Consensus 254 V~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~-e~elglgPL 332 (459)
T d1fwxa2 254 VKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVA-EPELGLGPL 332 (459)
T ss_dssp EEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEE-CCBCCSCEE
T ss_pred ceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEe-ecccCcCcc
Confidence 333343321 22233444455677899999999888765 88999999964221110000 0001 111223345
Q ss_pred EEEEecCCCCEEEEEECCCcEEEEeCCcc
Q 005352 491 GFQFLPQDSSKVMVSCADSQVRILQGPNV 519 (701)
Q Consensus 491 ~l~~~p~~~~~l~~~s~dg~I~iwd~~~~ 519 (701)
.-+|.. .+....+-.-|.+|.-|++...
T Consensus 333 ht~fd~-~g~aytslfids~v~kw~~~~~ 360 (459)
T d1fwxa2 333 HTAFDG-RGNAYTSLFLDSQVVKWNIEDA 360 (459)
T ss_dssp EEEECT-TSEEEEEETTTTEEEEEEHHHH
T ss_pred ccccCC-CceEEEEeeccceEEEEecchh
Confidence 567766 4555555556999999997544
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.23 E-value=0.011 Score=59.11 Aligned_cols=192 Identities=9% Similarity=0.038 Sum_probs=102.2
Q ss_pred EEEEEecCC-eEEEEECC-CcEEEEECCCCeeeeeec--CCCCeEEEEEeeCCCCEEEEEEcC------CcEEEEeCCCC
Q 005352 358 LDLSWSKNN-YLLSASID-KTVRLWRVGNDHCLRVFP--HSNYVTCVHFNPVDDNYFISGSID------GKVRIWAVLSC 427 (701)
Q Consensus 358 ~~l~~s~~~-~l~s~s~d-g~I~iWd~~~~~~~~~~~--h~~~V~~l~f~p~~~~~l~sgs~d------g~v~iwd~~~~ 427 (701)
...++.+++ +++.|+.+ ..+.+||..+......-. ....-...+..+ ++++++.|+.+ ..+.+||..+.
T Consensus 79 ~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~-dG~v~v~GG~~~~~~~~~~v~~yd~~~~ 157 (387)
T d1k3ia3 79 PGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPSSK 157 (387)
T ss_dssp CEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred eEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeec-CCceeeeccccccccccceeeeecCCCC
Confidence 355677888 66666554 589999998876543322 222233455666 88888888753 35899999887
Q ss_pred cEEEEecCC---------------CcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEE
Q 005352 428 HVVDWVDIR---------------QIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGF 492 (701)
Q Consensus 428 ~~~~~~~~~---------------~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l 492 (701)
+-....... ..-..+...++|+.++.+...+.+.+++..+.....................-..+
T Consensus 158 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (387)
T d1k3ia3 158 TWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAV 237 (387)
T ss_dssp EEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEE
T ss_pred ceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEE
Confidence 543321110 01112333456777777777788888888877654322211111111111122333
Q ss_pred EEecCCCCEEEEEECCC--------cEEEEeCCc---cceeeec---ccCCCCeEEEEEecCCCEEEEEeCC
Q 005352 493 QFLPQDSSKVMVSCADS--------QVRILQGPN---VIGKYKG---LRRSGNQLSACFTSDGKHIVSAGED 550 (701)
Q Consensus 493 ~~~p~~~~~l~~~s~dg--------~I~iwd~~~---~~~~~~~---~~~~~~v~~l~~s~dg~~l~sgs~D 550 (701)
.+...++++++.|+... ...+.+... ....... ......-.+....++|++++.|+.+
T Consensus 238 ~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~ 309 (387)
T d1k3ia3 238 MYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQR 309 (387)
T ss_dssp EEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBS
T ss_pred EeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcc
Confidence 44443566777766421 233333321 1111111 1112222345556899988888754
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.98 E-value=0.15 Score=47.69 Aligned_cols=233 Identities=9% Similarity=0.113 Sum_probs=143.4
Q ss_pred EEEccCCCEEEEEeCCCcEEEEEeecCeeeeeecCCCCCCceeEEeeccCCCcceeeeccccceeeEEeeecCCccEEEc
Q 005352 256 MKFSPDGQYLASAGDDGVVRLWQVVEDERLTEVDIPEIDPSCIYFTVNHLSELKPLFMDKEKISILKSLRRTSESACVVF 335 (701)
Q Consensus 256 l~fspdg~~Lasgs~Dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (701)
.-.+|..+.||.-+ ..++.|+|+++.+++..+..++
T Consensus 68 AIMhP~~~IiALra-g~~LQiFnletK~klks~~~~e------------------------------------------- 103 (327)
T d1utca2 68 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD------------------------------------------- 103 (327)
T ss_dssp EEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSS-------------------------------------------
T ss_pred hhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCC-------------------------------------------
Confidence 34578888777765 4689999999988766554332
Q ss_pred CCccccccCCCeEEEcCCccCeEEEEEecCCeEEEEECCCcEEEEECCC-Ceeeeeec-----CCCCeEEEEEeeCCCCE
Q 005352 336 PPKVFRILEKPLHEFHGHSGEILDLSWSKNNYLLSASIDKTVRLWRVGN-DHCLRVFP-----HSNYVTCVHFNPVDDNY 409 (701)
Q Consensus 336 ~~~~~~~~~~~~~~~~~h~~~I~~l~~s~~~~l~s~s~dg~I~iWd~~~-~~~~~~~~-----h~~~V~~l~f~p~~~~~ 409 (701)
+|.-=.|-.+..|+-.+ +..|+-|+++. ..+.+.|. ....|..-..++ +.++
T Consensus 104 --------------------~VvfWkWis~~~L~lVT-~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~-~~kW 161 (327)
T d1utca2 104 --------------------DVTFWKWISLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDA-KQKW 161 (327)
T ss_dssp --------------------CCCEEEESSSSEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECT-TSCE
T ss_pred --------------------CcEEEEecCCCEEEEEc-CCceEEEcccCCCCchhhhhhcccccCceEEEEEECC-CCCE
Confidence 34444666555444333 34688899843 24666664 234566666777 7777
Q ss_pred EEEEEc-------CCcEEEEeCCCCcEEEEecCCCcEEEEEEeeC--C-CeEEE---EecCCcEEEEECCCCe---eee-
Q 005352 410 FISGSI-------DGKVRIWAVLSCHVVDWVDIRQIVTAVCYRPD--G-QGGIV---GSMMGDCRFYNVSDNH---LEL- 472 (701)
Q Consensus 410 l~sgs~-------dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~--g-~~l~~---gs~dg~v~i~d~~~~~---~~~- 472 (701)
++..+. .|.+.+|....+....+.+|......+.+.-+ . +.++. +...+++++.++.... ...
T Consensus 162 ~~l~GI~~~~~~i~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~ 241 (327)
T d1utca2 162 LLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFP 241 (327)
T ss_dssp EEEEEEEEETTEEEEEEEEEETTTTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCC
T ss_pred EEEEeEecCCCceeEEEEEEEeccCcCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCc
Confidence 665432 36789999887654444444332222221110 0 11111 2234789999986532 111
Q ss_pred eeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEEeCCCc
Q 005352 473 DAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSAGEDSN 552 (701)
Q Consensus 473 ~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sgs~Dg~ 552 (701)
.....+.........-..++..++ ....+..-+.-|.|++||+.+....|...-....|...+-+....=+++-..+|.
T Consensus 242 kk~vdi~fppea~~DFPvamqvs~-kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~Gq 320 (327)
T d1utca2 242 KKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQ 320 (327)
T ss_dssp CEEEECCCCTTCTTCCEEEEEEET-TTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTSE
T ss_pred ceeEEEECCccccCCcEEEEEeec-cCCEEEEEecCcEEEEEEcccccEEEEeecCCCceEEeccCCCCceEEEECCCCe
Confidence 112222222333445566788888 6789999999999999999999888877666777776666666555666667887
Q ss_pred EEE
Q 005352 553 VYM 555 (701)
Q Consensus 553 I~i 555 (701)
|.-
T Consensus 321 Vl~ 323 (327)
T d1utca2 321 VLS 323 (327)
T ss_dssp EEE
T ss_pred EEE
Confidence 754
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.71 E-value=0.2 Score=46.78 Aligned_cols=191 Identities=9% Similarity=0.090 Sum_probs=119.3
Q ss_pred EecCCeEEEEECCCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCC-cEEEEecC-----
Q 005352 362 WSKNNYLLSASIDKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSC-HVVDWVDI----- 435 (701)
Q Consensus 362 ~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~-~~~~~~~~----- 435 (701)
.+|...+++--...++.++|+++.+.++.+....+|.--.|- +.+.|+..+ +..|+-|++... ...+.++.
T Consensus 70 MhP~~~IiALrag~~LQiFnletK~klks~~~~e~VvfWkWi--s~~~L~lVT-~taVYHW~~~g~s~P~k~fdR~~~L~ 146 (327)
T d1utca2 70 MNPASKVIALKAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWI--SLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLA 146 (327)
T ss_dssp ECSSSSEEEEEETTEEEEEETTTTEEEEEEECSSCCCEEEES--SSSEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGT
T ss_pred cCCCCcEEEEecCCeEEEEehhHhhhhceEEcCCCcEEEEec--CCCEEEEEc-CCceEEEcccCCCCchhhhhhccccc
Confidence 456662222222668999999999999999988889888886 567777666 567999999542 23333322
Q ss_pred CCcEEEEEEeeCCCeEEEEec-------CCcEEEEECCCCeeeee-eeEE-eecc-cCCCCCCeeEEEEecCCCCEEEEE
Q 005352 436 RQIVTAVCYRPDGQGGIVGSM-------MGDCRFYNVSDNHLELD-AEIC-VHSK-KKAPCKRITGFQFLPQDSSKVMVS 505 (701)
Q Consensus 436 ~~~i~~i~~sp~g~~l~~gs~-------dg~v~i~d~~~~~~~~~-~~~~-~~~~-~~~~~~~i~~l~~~p~~~~~l~~~ 505 (701)
...|..-..+++.++++..+- .|.+.+|..+.+..+.. .... .... ......+..-++|... +
T Consensus 147 ~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r-------~ 219 (327)
T d1utca2 147 GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVR-------G 219 (327)
T ss_dssp TCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEE-------E
T ss_pred CceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcCccccceeeeeEEEEcCCCCCCceEEEEEEC-------C
Confidence 245777777888888776432 46788999887643321 0000 0000 0111111122222210 1
Q ss_pred ECCCcEEEEeCCcc---ceeee---------cccCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCC
Q 005352 506 CADSQVRILQGPNV---IGKYK---------GLRRSGNQLSACFTSDGKHIVSAGEDSNVYMWNCIGHE 562 (701)
Q Consensus 506 s~dg~I~iwd~~~~---~~~~~---------~~~~~~~v~~l~~s~dg~~l~sgs~Dg~I~iWd~~~~~ 562 (701)
...++++|.++... ...+. ......-..++..++....+..-+.-|.|++||+.++.
T Consensus 220 ~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt 288 (327)
T d1utca2 220 QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGT 288 (327)
T ss_dssp TTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCC
T ss_pred CCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEccccc
Confidence 22478899887532 11111 11134566789999999999999999999999999987
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.67 E-value=0.26 Score=45.93 Aligned_cols=201 Identities=7% Similarity=-0.001 Sum_probs=124.4
Q ss_pred cCCccCeEEEEEecCC-eEE-EEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCC
Q 005352 351 HGHSGEILDLSWSKNN-YLL-SASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSC 427 (701)
Q Consensus 351 ~~h~~~I~~l~~s~~~-~l~-s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~ 427 (701)
..+...+..|+|...+ .++ +-..++.|+..++........+. ....+.++++....+++.++-...+.|.+.++...
T Consensus 32 ~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~ 111 (263)
T d1npea_ 32 HIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGT 111 (263)
T ss_dssp EEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred ccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCc
Confidence 3444567889998765 444 44566789888887665554443 33578999998745555556566788999999876
Q ss_pred cEEEEecC-CCcEEEEEEeeCCCeEEEEecC-C--cEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEE
Q 005352 428 HVVDWVDI-RQIVTAVCYRPDGQGGIVGSMM-G--DCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVM 503 (701)
Q Consensus 428 ~~~~~~~~-~~~i~~i~~sp~g~~l~~gs~d-g--~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~ 503 (701)
........ ...+..++++|...+++..... + .|.-.++....... + .........++++.+.++.++.
T Consensus 112 ~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~-----i---~~~~~~~P~glaiD~~~~~lYw 183 (263)
T d1npea_ 112 QRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRI-----L---AQDNLGLPNGLTFDAFSSQLCW 183 (263)
T ss_dssp SCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEE-----E---ECTTCSCEEEEEEETTTTEEEE
T ss_pred eEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCcee-----e---eeecccccceEEEeecCcEEEE
Confidence 54433333 3678999999987777655432 2 34444555433221 1 1112345678999885444555
Q ss_pred EEECCCcEEEEeCCccceeeecccCCCCeEEEEEecCCCEEEEE-eCCCcEEEEeCCCCC
Q 005352 504 VSCADSQVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSA-GEDSNVYMWNCIGHE 562 (701)
Q Consensus 504 ~~s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sg-s~Dg~I~iWd~~~~~ 562 (701)
+-...+.|...+........... ......++++. +.+|... ...+.|...|..+++
T Consensus 184 ~d~~~~~I~~~~~~g~~~~~v~~-~~~~P~~lav~--~~~lYwtd~~~~~I~~~~~~~g~ 240 (263)
T d1npea_ 184 VDAGTHRAECLNPAQPGRRKVLE-GLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISK 240 (263)
T ss_dssp EETTTTEEEEEETTEEEEEEEEE-CCCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTE
T ss_pred EeCCCCEEEEEECCCCCeEEEEC-CCCCcEEEEEE--CCEEEEEECCCCEEEEEECCCCc
Confidence 55667889998887433222111 22334677775 4455444 466778888877665
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.35 E-value=0.41 Score=44.53 Aligned_cols=200 Identities=7% Similarity=-0.022 Sum_probs=121.4
Q ss_pred CccCeEEEEEecCC-eEEEE-ECCCcEEEEECCCCe----eeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCC
Q 005352 353 HSGEILDLSWSKNN-YLLSA-SIDKTVRLWRVGNDH----CLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVL 425 (701)
Q Consensus 353 h~~~I~~l~~s~~~-~l~s~-s~dg~I~iWd~~~~~----~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~ 425 (701)
....+..|+|.+.. .|+-+ ...+.|.--++.... ...... ....+..+++.+..+++.++-...+.|.+.++.
T Consensus 28 ~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~ 107 (266)
T d1ijqa1 28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 107 (266)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecC
Confidence 44567789998766 45444 455667766664322 111222 335577899987566666666667889999998
Q ss_pred CCcEEE-EecCCCcEEEEEEeeCCCeEEEEec--CCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEE
Q 005352 426 SCHVVD-WVDIRQIVTAVCYRPDGQGGIVGSM--MGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKV 502 (701)
Q Consensus 426 ~~~~~~-~~~~~~~i~~i~~sp~g~~l~~gs~--dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l 502 (701)
...... .......+..++++|...+|+.... .+.|.-.++........ ........+++++.+..+.+.
T Consensus 108 g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l--------~~~~~~~p~gl~iD~~~~~lY 179 (266)
T d1ijqa1 108 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL--------VTENIQWPNGITLDLLSGRLY 179 (266)
T ss_dssp SSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEE--------ECSSCSCEEEEEEETTTTEEE
T ss_pred CceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecc--------cccccceeeEEEeeccccEEE
Confidence 776543 3334466899999997666665542 34577777765433211 011234568899998555555
Q ss_pred EEEECCCcEEEEeCCcc--ceeeecccCCCCeEEEEEecCCCEEEEE-eCCCcEEEEeCCCCC
Q 005352 503 MVSCADSQVRILQGPNV--IGKYKGLRRSGNQLSACFTSDGKHIVSA-GEDSNVYMWNCIGHE 562 (701)
Q Consensus 503 ~~~s~dg~I~iwd~~~~--~~~~~~~~~~~~v~~l~~s~dg~~l~sg-s~Dg~I~iWd~~~~~ 562 (701)
.+-...+.|...++... ..............++++. +.+|..+ ..++.|+..+..++.
T Consensus 180 w~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~~g~ 240 (266)
T d1ijqa1 180 WVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGS 240 (266)
T ss_dssp EEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCC
T ss_pred EecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE--CCEEEEEECCCCeEEEEECCCCc
Confidence 55566789998887533 2222332233456677776 3445444 467888888877765
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=95.58 E-value=1.1 Score=43.12 Aligned_cols=102 Identities=13% Similarity=0.141 Sum_probs=63.0
Q ss_pred eEEEEEC---CCcEEEEECCCCe--e--eeeec--CCCCeEEEEEeeCCCCEEEEEE--c-------------CCcEEEE
Q 005352 367 YLLSASI---DKTVRLWRVGNDH--C--LRVFP--HSNYVTCVHFNPVDDNYFISGS--I-------------DGKVRIW 422 (701)
Q Consensus 367 ~l~s~s~---dg~I~iWd~~~~~--~--~~~~~--h~~~V~~l~f~p~~~~~l~sgs--~-------------dg~v~iw 422 (701)
+|+.... ..+|-+|++.... . +..+. .....+.+++.. ++.+++|-. . -+...+|
T Consensus 113 ~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~-~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~ 191 (340)
T d1v04a_ 113 YLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVT 191 (340)
T ss_dssp EEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE-TTEEEEEESCSCCSHHHHHHHHHTTCCCEEEE
T ss_pred EEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEec-CCCEEEecCccCcChhhhhhhHhhcCCceeEE
Confidence 5555543 4568888775332 2 12222 235578899888 787777731 0 1233444
Q ss_pred eCCCCcEEEEecCCCcEEEEEEeeCCCeEEEE-ecCCcEEEEECCCCe
Q 005352 423 AVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVG-SMMGDCRFYNVSDNH 469 (701)
Q Consensus 423 d~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~g-s~dg~v~i~d~~~~~ 469 (701)
....+........-...+.|+++|++++|+++ +..+.|+.|++....
T Consensus 192 ~~~~~~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~ 239 (340)
T d1v04a_ 192 YYSPNDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANW 239 (340)
T ss_dssp EECSSCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred EEcCCceEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCc
Confidence 44444444334444678999999999887776 457889999997654
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=95.23 E-value=1.2 Score=43.11 Aligned_cols=94 Identities=13% Similarity=0.173 Sum_probs=64.7
Q ss_pred EEEEECCCCeeeee--e--cCCCCeEEEEEeeCCCCEEEEEEcC-CcEEEEeCCCCcEEEEecC--CCcEEEEEEeeCCC
Q 005352 377 VRLWRVGNDHCLRV--F--PHSNYVTCVHFNPVDDNYFISGSID-GKVRIWAVLSCHVVDWVDI--RQIVTAVCYRPDGQ 449 (701)
Q Consensus 377 I~iWd~~~~~~~~~--~--~h~~~V~~l~f~p~~~~~l~sgs~d-g~v~iwd~~~~~~~~~~~~--~~~i~~i~~sp~g~ 449 (701)
+.+||..+++.... . .+.......++.+ ++.+++.|+.+ ..+.+||..+..-...... ...-..++..+||+
T Consensus 54 ~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~-~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~ 132 (387)
T d1k3ia3 54 TSSWDPSTGIVSDRTVTVTKHDMFCPGISMDG-NGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGR 132 (387)
T ss_dssp EEEECTTTCCBCCCEEEECSCCCSSCEEEECT-TSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSC
T ss_pred EEEEECCCCcEeecCCCCCCcccceeEEEEec-CCcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCCc
Confidence 77999998764332 1 2334445667777 89998888755 5799999988765533221 22234567778999
Q ss_pred eEEEEecC------CcEEEEECCCCeee
Q 005352 450 GGIVGSMM------GDCRFYNVSDNHLE 471 (701)
Q Consensus 450 ~l~~gs~d------g~v~i~d~~~~~~~ 471 (701)
.++.|+.. ..+.+||..++...
T Consensus 133 v~v~GG~~~~~~~~~~v~~yd~~~~~W~ 160 (387)
T d1k3ia3 133 VFTIGGSWSGGVFEKNGEVYSPSSKTWT 160 (387)
T ss_dssp EEEECCCCCSSSCCCCEEEEETTTTEEE
T ss_pred eeeeccccccccccceeeeecCCCCcee
Confidence 99988753 35899999988754
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.21 E-value=1.2 Score=41.12 Aligned_cols=155 Identities=6% Similarity=-0.057 Sum_probs=93.4
Q ss_pred cCeEEEEEecCC-eEE-EEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCc--EEEEeCCCCcE
Q 005352 355 GEILDLSWSKNN-YLL-SASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGK--VRIWAVLSCHV 429 (701)
Q Consensus 355 ~~I~~l~~s~~~-~l~-s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~--v~iwd~~~~~~ 429 (701)
..+.+|++..-+ .|+ +-...+.|.+.++....+...+. .-..+..++++|..+.++.+-...+. |.--++.....
T Consensus 79 ~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~ 158 (263)
T d1npea_ 79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR 158 (263)
T ss_dssp CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC
T ss_pred ccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCc
Confidence 356778887544 444 55567789999987665544443 33678999999944444444332233 44445554433
Q ss_pred EEEe-cCCCcEEEEEEeeCCCeEEEE-ecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEEC
Q 005352 430 VDWV-DIRQIVTAVCYRPDGQGGIVG-SMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCA 507 (701)
Q Consensus 430 ~~~~-~~~~~i~~i~~sp~g~~l~~g-s~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~ 507 (701)
..+. ..-..+..+++.+.++.|+.+ ...+.|...++........ ... . ....++++. ++.++.+-..
T Consensus 159 ~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v----~~~----~-~~P~~lav~--~~~lYwtd~~ 227 (263)
T d1npea_ 159 RILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKV----LEG----L-QYPFAVTSY--GKNLYYTDWK 227 (263)
T ss_dssp EEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEE----EEC----C-CSEEEEEEE--TTEEEEEETT
T ss_pred eeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEE----ECC----C-CCcEEEEEE--CCEEEEEECC
Confidence 3333 233567899999888877665 4578899999876543211 111 1 123467664 3445555556
Q ss_pred CCcEEEEeCCccc
Q 005352 508 DSQVRILQGPNVI 520 (701)
Q Consensus 508 dg~I~iwd~~~~~ 520 (701)
.+.|...|.....
T Consensus 228 ~~~I~~~~~~~g~ 240 (263)
T d1npea_ 228 TNSVIAMDLAISK 240 (263)
T ss_dssp TTEEEEEETTTTE
T ss_pred CCEEEEEECCCCc
Confidence 7888888876544
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=95.16 E-value=1.5 Score=45.60 Aligned_cols=98 Identities=10% Similarity=-0.089 Sum_probs=61.1
Q ss_pred CCcEEEEECCCCeeeeeecCCC--------------------------------------Ce-EEEEEeeCCCCEEEEEE
Q 005352 374 DKTVRLWRVGNDHCLRVFPHSN--------------------------------------YV-TCVHFNPVDDNYFISGS 414 (701)
Q Consensus 374 dg~I~iWd~~~~~~~~~~~h~~--------------------------------------~V-~~l~f~p~~~~~l~sgs 414 (701)
.|.|+-+|+.+++.+..+.+.. .+ ...++.+ ...+++.+.
T Consensus 175 ~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~-~~g~~y~~t 253 (571)
T d2ad6a1 175 RGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDP-KLNLFYYGS 253 (571)
T ss_dssp CCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEEC
T ss_pred cCcEEEEECCCCcEEEEEeccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccch-hcCeeeeec
Confidence 6789999999999888664211 11 2245566 555555444
Q ss_pred c----------------CCcEEEEeCCCCcEEEEec-CC---------CcEEEEEEeeCCC---eEEEEecCCcEEEEEC
Q 005352 415 I----------------DGKVRIWAVLSCHVVDWVD-IR---------QIVTAVCYRPDGQ---GGIVGSMMGDCRFYNV 465 (701)
Q Consensus 415 ~----------------dg~v~iwd~~~~~~~~~~~-~~---------~~i~~i~~sp~g~---~l~~gs~dg~v~i~d~ 465 (701)
. ...+.-.|+++++.+-... .. .......+..+++ .++.++.+|.+.++|.
T Consensus 254 g~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr 333 (571)
T d2ad6a1 254 GNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNR 333 (571)
T ss_dssp CCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEET
T ss_pred ccccCccccccccccccccceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEec
Confidence 3 2457778999998773222 11 1222233334554 4677888999999999
Q ss_pred CCCeeee
Q 005352 466 SDNHLEL 472 (701)
Q Consensus 466 ~~~~~~~ 472 (701)
.+++...
T Consensus 334 ~tG~~i~ 340 (571)
T d2ad6a1 334 ENGNLIV 340 (571)
T ss_dssp TTCCEEE
T ss_pred CCCcEee
Confidence 9988754
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=95.01 E-value=0.22 Score=52.15 Aligned_cols=108 Identities=11% Similarity=0.053 Sum_probs=68.0
Q ss_pred CCeEEEEECCCcEEEEECCCCeeeeeecCC-----------CC-eEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEE
Q 005352 365 NNYLLSASIDKTVRLWRVGNDHCLRVFPHS-----------NY-VTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDW 432 (701)
Q Consensus 365 ~~~l~s~s~dg~I~iWd~~~~~~~~~~~h~-----------~~-V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~ 432 (701)
++.|+.++.++.|.-.|..+++.+..+... .. -..++. .+..++.+..++.|.-.|..+++.+-.
T Consensus 66 ~g~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~g~l~Alda~tG~~~w~ 142 (560)
T d1kv9a2 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL---WGDKVYVGTLDGRLIALDAKTGKAIWS 142 (560)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE---EBTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CCEEEEECCCCeEEEEeCCCCCEEEEECCCCCccccccccccccccCcce---eCCeEEEEeCCCEEEEEECCCCcEEec
Confidence 567777888899999999999999886411 00 112222 245678888899999999999988754
Q ss_pred ecCCCc--EEEEEEee--CCCeEEEEec------CCcEEEEECCCCeeeeeee
Q 005352 433 VDIRQI--VTAVCYRP--DGQGGIVGSM------MGDCRFYNVSDNHLELDAE 475 (701)
Q Consensus 433 ~~~~~~--i~~i~~sp--~g~~l~~gs~------dg~v~i~d~~~~~~~~~~~ 475 (701)
...... ...+.-.| ....++++.. .|.|.-+|.++++......
T Consensus 143 ~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~ 195 (560)
T d1kv9a2 143 QQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY 195 (560)
T ss_dssp EECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred cCccCcccceeeeeeeeeecCcccccccceeccccceEEEEECCCceEEeeee
Confidence 432211 00111111 1234444432 3679999999999876543
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=94.63 E-value=2 Score=44.49 Aligned_cols=65 Identities=8% Similarity=-0.074 Sum_probs=40.3
Q ss_pred CCeEEEEECCCcEEEEECCCCeeeeeec---CC-CCeE--EEEEeeCCCCEEEEEEc------CCcEEEEeCCCCcEEE
Q 005352 365 NNYLLSASIDKTVRLWRVGNDHCLRVFP---HS-NYVT--CVHFNPVDDNYFISGSI------DGKVRIWAVLSCHVVD 431 (701)
Q Consensus 365 ~~~l~s~s~dg~I~iWd~~~~~~~~~~~---h~-~~V~--~l~f~p~~~~~l~sgs~------dg~v~iwd~~~~~~~~ 431 (701)
++.++.++.|+.+.-.|..+++.+.... +. ..+. ..-.- -+..++++.. .|.|+-+|.++++.+-
T Consensus 128 ~~~v~~~t~~g~l~alda~tG~~~W~~~~~~~~~~~~~~~~~p~v--~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W 204 (573)
T d1kb0a2 128 KGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKW 204 (573)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred CCcEEEEecccceeeeccccccceecccCccCCcceEEeecceEE--EeccEEEeeccccccccceEEEEecCCcccee
Confidence 3466777888888888999998876554 11 1111 10001 1344555432 4679999999998873
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.06 E-value=3.1 Score=41.12 Aligned_cols=204 Identities=7% Similarity=0.008 Sum_probs=102.7
Q ss_pred CeEEEEEecCC-e-EEEEECCC----cEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcC-------------
Q 005352 356 EILDLSWSKNN-Y-LLSASIDK----TVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSID------------- 416 (701)
Q Consensus 356 ~I~~l~~s~~~-~-l~s~s~dg----~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~d------------- 416 (701)
.+..++++|++ + +++-+.+| .|++.|+.+++.+...-.......++|.+ ++..|+....+
T Consensus 126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~-D~~~~~Y~~~~~~~~~~~~~~~~~ 204 (430)
T d1qfma1 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTH-DGKGMFYNAYPQQDGKSDGTETST 204 (430)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECT-TSSEEEEEECCCCSSCCSSSCCCC
T ss_pred eecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccccccccceEEcC-CCCEEEEEEeccccCccccccccc
Confidence 44566789999 4 44545454 59999999998765322122235688998 77777654432
Q ss_pred ---CcEEEEeCCCCcEE--EEec---CCCcEEEEEEeeCCCeEEEEec---CCcEEE--EECCCCeeeeeeeEEeecccC
Q 005352 417 ---GKVRIWAVLSCHVV--DWVD---IRQIVTAVCYRPDGQGGIVGSM---MGDCRF--YNVSDNHLELDAEICVHSKKK 483 (701)
Q Consensus 417 ---g~v~iwd~~~~~~~--~~~~---~~~~i~~i~~sp~g~~l~~gs~---dg~v~i--~d~~~~~~~~~~~~~~~~~~~ 483 (701)
..|..|.+.+...- .... ....+..+..++++++++.... .....+ .++..................
T Consensus 205 ~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 284 (430)
T d1qfma1 205 NLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLID 284 (430)
T ss_dssp CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEEC
T ss_pred CCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEeec
Confidence 25777887765321 1221 2234667788899998876443 233334 444332111000000000000
Q ss_pred CCCCCeeEEEEecCCCCEEEEEEC---CCcEEEEeCCcccee-e-ecc-cCCCCeEEEEEecCCCEEEEE-eCCC--cEE
Q 005352 484 APCKRITGFQFLPQDSSKVMVSCA---DSQVRILQGPNVIGK-Y-KGL-RRSGNQLSACFTSDGKHIVSA-GEDS--NVY 554 (701)
Q Consensus 484 ~~~~~i~~l~~~p~~~~~l~~~s~---dg~I~iwd~~~~~~~-~-~~~-~~~~~v~~l~~s~dg~~l~sg-s~Dg--~I~ 554 (701)
.......-+ .+. ++.+++.... ++.|...++...... . ... .+...+..-.+...+.+|+.. -.++ .|+
T Consensus 285 ~~~~~~~~~-~~~-~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~~l~ 362 (430)
T d1qfma1 285 NFEGEYDYV-TNE-GTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQ 362 (430)
T ss_dssp SSSSCEEEE-EEE-TTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEE
T ss_pred ccccceEEE-ecC-CceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCCEeEEE
Confidence 011111111 122 2333333332 466666666543211 1 111 133445544555555666654 4554 488
Q ss_pred EEeCCCCC
Q 005352 555 MWNCIGHE 562 (701)
Q Consensus 555 iWd~~~~~ 562 (701)
++++.+++
T Consensus 363 v~~~~~~~ 370 (430)
T d1qfma1 363 LHDLATGA 370 (430)
T ss_dssp EEETTTCC
T ss_pred EEECCCCc
Confidence 89887765
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=93.19 E-value=4.4 Score=39.91 Aligned_cols=198 Identities=9% Similarity=0.034 Sum_probs=91.8
Q ss_pred EEEEEecCC-eEEEEECC----------------CcEEEEECCCCee--eeeec---CCCCeEEEEEeeCCCCEEEEEEc
Q 005352 358 LDLSWSKNN-YLLSASID----------------KTVRLWRVGNDHC--LRVFP---HSNYVTCVHFNPVDDNYFISGSI 415 (701)
Q Consensus 358 ~~l~~s~~~-~l~s~s~d----------------g~I~iWd~~~~~~--~~~~~---h~~~V~~l~f~p~~~~~l~sgs~ 415 (701)
..++|.+++ .|+-...+ ..|..|.+.+... ...+. ....+..+..++ ++++++....
T Consensus 174 ~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~-d~~~l~i~~~ 252 (430)
T d1qfma1 174 SCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD-DGRYVLLSIR 252 (430)
T ss_dssp CCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEE
T ss_pred cceEEcCCCCEEEEEEeccccCcccccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccC-CcceeeEEee
Confidence 357788887 44433322 2577888877532 23333 233466677777 8888764432
Q ss_pred ---CCcEEEE--eCCCCc--------EEEEecCCCcEEEEEEeeCCCeEEEEe---cCCcEEEEECCCCeeeeeeeEEee
Q 005352 416 ---DGKVRIW--AVLSCH--------VVDWVDIRQIVTAVCYRPDGQGGIVGS---MMGDCRFYNVSDNHLELDAEICVH 479 (701)
Q Consensus 416 ---dg~v~iw--d~~~~~--------~~~~~~~~~~i~~i~~sp~g~~l~~gs---~dg~v~i~d~~~~~~~~~~~~~~~ 479 (701)
+....+| |+.... ...............-+.++.+++... .++.|...++....... ....
T Consensus 253 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~-w~~v-- 329 (430)
T d1qfma1 253 EGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESK-WKVL-- 329 (430)
T ss_dssp CSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTBCCGGG-CEEE--
T ss_pred ccCCccEEEEEeeCCCcccccccccceeEeecccccceEEEecCCceeecccCcccccceeEEecCCCCcccc-ceEE--
Confidence 2333444 443221 112222222222222222333333332 24566666665432110 0000
Q ss_pred cccCCCCCCeeEEEEecCCCCEEEEE-ECCC--cEEEEeCCccceeeecccCCCCeEEEEEecCCCEEE-EEe---CCCc
Q 005352 480 SKKKAPCKRITGFQFLPQDSSKVMVS-CADS--QVRILQGPNVIGKYKGLRRSGNQLSACFTSDGKHIV-SAG---EDSN 552 (701)
Q Consensus 480 ~~~~~~~~~i~~l~~~p~~~~~l~~~-s~dg--~I~iwd~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~-sgs---~Dg~ 552 (701)
...+...+..-.+.. .+.+|+.. -.++ .|++++..............+.+..+...++...+. +-+ .-.+
T Consensus 330 --i~~~~~~~~~~~~~~-~~~~lvl~~~~~~~~~l~v~~~~~~~~~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~ 406 (430)
T d1qfma1 330 --VPEHEKDVLEWVACV-RSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGI 406 (430)
T ss_dssp --ECCCSSCEEEEEEEE-TTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCE
T ss_pred --ecccCcceeeeEEEE-ECCEEEEEEEcCCEeEEEEEECCCCcEEEecCCCCceEeeccCCCCCCEEEEEEcCCCCCCe
Confidence 111222233223333 23455444 4443 477888765433322222445555555555554433 222 3377
Q ss_pred EEEEeCCCCC
Q 005352 553 VYMWNCIGHE 562 (701)
Q Consensus 553 I~iWd~~~~~ 562 (701)
++-+|+.+++
T Consensus 407 ~y~~Dl~t~~ 416 (430)
T d1qfma1 407 IYHCDLTKEE 416 (430)
T ss_dssp EEEEETTSSS
T ss_pred EEEEECCCCC
Confidence 9999998876
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=92.92 E-value=1.1 Score=46.69 Aligned_cols=79 Identities=6% Similarity=-0.096 Sum_probs=56.0
Q ss_pred CcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcEEE--EEEeeCCC-eE
Q 005352 375 KTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTA--VCYRPDGQ-GG 451 (701)
Q Consensus 375 g~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~--i~~sp~g~-~l 451 (701)
|.|.-+|+.+++.+..+....+..+-.... .+.++++|+.||.++.+|.++++.+-.......+.+ +.|..+|+ ++
T Consensus 444 G~l~AiD~~TG~~~W~~~~~~~~~~g~l~T-agglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqYi 522 (571)
T d2ad6a1 444 GQIRAFDLTTGKAKWTKWEKFAAWGGTLYT-KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYI 522 (571)
T ss_dssp EEEEEECTTTCCEEEEEEESSCCCSBCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred ccEEEeccCCCceeeEcCCCCCCCcceeEe-cCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEEEE
Confidence 578999999999988877444333222233 567888899999999999999999965554444333 66777886 44
Q ss_pred EEE
Q 005352 452 IVG 454 (701)
Q Consensus 452 ~~g 454 (701)
++.
T Consensus 523 ~v~ 525 (571)
T d2ad6a1 523 GSM 525 (571)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=92.14 E-value=1.3 Score=46.01 Aligned_cols=80 Identities=8% Similarity=0.115 Sum_probs=57.0
Q ss_pred CcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcEE--EEEEeeCCC-eE
Q 005352 375 KTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVT--AVCYRPDGQ-GG 451 (701)
Q Consensus 375 g~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~--~i~~sp~g~-~l 451 (701)
|.|.-||+.+++.+..+....+...-...- .+.++++|+.||.++.+|..+++.+-.......+. -+.|..+|+ +|
T Consensus 438 G~l~A~D~~tGk~~W~~~~~~~~~gg~l~T-agglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqyv 516 (560)
T d1kv9a2 438 GALLAWDPVKQKAAWKVPYPTHWNGGTLST-AGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYV 516 (560)
T ss_dssp EEEEEEETTTTEEEEEEEESSSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred cceEEEeCCCCeEeeeccCCCCCCCceeEE-CCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEE
Confidence 578889999999998887554444333343 67788899999999999999999985554443332 256667885 55
Q ss_pred EEEe
Q 005352 452 IVGS 455 (701)
Q Consensus 452 ~~gs 455 (701)
++.+
T Consensus 517 ~v~a 520 (560)
T d1kv9a2 517 AIMA 520 (560)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 5443
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=91.88 E-value=8.2 Score=39.82 Aligned_cols=99 Identities=9% Similarity=-0.061 Sum_probs=60.5
Q ss_pred CCcEEEEECCCCeeeeeecCC--------------------------------------C-CeEEEEEeeCCCCEEEEEE
Q 005352 374 DKTVRLWRVGNDHCLRVFPHS--------------------------------------N-YVTCVHFNPVDDNYFISGS 414 (701)
Q Consensus 374 dg~I~iWd~~~~~~~~~~~h~--------------------------------------~-~V~~l~f~p~~~~~l~sgs 414 (701)
.|.|+-+|+.+++.+..+... . .-..+.+.+ ..+++..+.
T Consensus 181 ~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~-~~~lvy~~t 259 (596)
T d1w6sa_ 181 RGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDP-GTNLIYFGT 259 (596)
T ss_dssp CCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEEC
T ss_pred cCceEEEECCCCcEEEEeeccCCccccccccccccccccccccccccccCCCCceecCCCcccccccccc-CCCeeeccc
Confidence 478999999999988876311 0 112345566 555555543
Q ss_pred cC----------------CcEEEEeCCCCcEEEEec---CC-------CcEEEEEE-eeCCC---eEEEEecCCcEEEEE
Q 005352 415 ID----------------GKVRIWAVLSCHVVDWVD---IR-------QIVTAVCY-RPDGQ---GGIVGSMMGDCRFYN 464 (701)
Q Consensus 415 ~d----------------g~v~iwd~~~~~~~~~~~---~~-------~~i~~i~~-sp~g~---~l~~gs~dg~v~i~d 464 (701)
.+ ..|.-.|+.+++.+-.+. |. ..+.-+.. ..+|+ .++.+..+|.+.++|
T Consensus 260 g~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlD 339 (596)
T d1w6sa_ 260 GNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLD 339 (596)
T ss_dssp CCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEE
T ss_pred ccccccccccccccccccccccccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeec
Confidence 32 347778999998773222 11 11222221 23443 577788899999999
Q ss_pred CCCCeeeee
Q 005352 465 VSDNHLELD 473 (701)
Q Consensus 465 ~~~~~~~~~ 473 (701)
-.++++...
T Consensus 340 r~tG~~i~~ 348 (596)
T d1w6sa_ 340 RTDGALVSA 348 (596)
T ss_dssp TTTCCEEEE
T ss_pred CCCCceeee
Confidence 999887643
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=91.12 E-value=1.3 Score=45.93 Aligned_cols=80 Identities=15% Similarity=0.112 Sum_probs=55.7
Q ss_pred CcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcEEE--EEEeeCCC-eE
Q 005352 375 KTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTA--VCYRPDGQ-GG 451 (701)
Q Consensus 375 g~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~--i~~sp~g~-~l 451 (701)
|.|.-||+.+++.+..+.+..+...=.... .+.++++|+.||.++.+|..+++.+-.+.....+.. +.|..+|+ ++
T Consensus 457 G~l~AiD~~tGk~~W~~~~~~p~~gg~lst-agglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQYv 535 (573)
T d1kb0a2 457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTT-AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYV 535 (573)
T ss_dssp EEEEEEETTTTEEEEEEEESSSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred ccEEEeCCCCCceEeeecCCCCCCCceEEE-cCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEE
Confidence 468899999999998887544333222333 677888999999999999999999855554433322 55666886 44
Q ss_pred EEEe
Q 005352 452 IVGS 455 (701)
Q Consensus 452 ~~gs 455 (701)
++.+
T Consensus 536 ~v~~ 539 (573)
T d1kb0a2 536 SVAV 539 (573)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 4433
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.07 E-value=5.5 Score=36.28 Aligned_cols=156 Identities=8% Similarity=-0.027 Sum_probs=93.8
Q ss_pred cCeEEEEEecCC--eEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEE-cCCcEEEEeCCCCcEE
Q 005352 355 GEILDLSWSKNN--YLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGS-IDGKVRIWAVLSCHVV 430 (701)
Q Consensus 355 ~~I~~l~~s~~~--~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs-~dg~v~iwd~~~~~~~ 430 (701)
..+..|++.+.+ ...+-...+.|.+.++.......... .......++++|..+.++.+-. ..+.|.-.++......
T Consensus 77 ~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~ 156 (266)
T d1ijqa1 77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY 156 (266)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE
T ss_pred CCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCcee
Confidence 345567776544 44455567889999998766554444 4567899999994444444432 2345767777655554
Q ss_pred EEec-CCCcEEEEEEeeCCCeEEEE-ecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecCCCCEEEEEECC
Q 005352 431 DWVD-IRQIVTAVCYRPDGQGGIVG-SMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQDSSKVMVSCAD 508 (701)
Q Consensus 431 ~~~~-~~~~i~~i~~sp~g~~l~~g-s~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~d 508 (701)
.+.. .-..++.+++.+.++.|+.+ ...+.|...++........ .. .........++++.. +.++.+-..+
T Consensus 157 ~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~----~~--~~~~~~~p~~lav~~--~~ly~td~~~ 228 (266)
T d1ijqa1 157 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTI----LE--DEKRLAHPFSLAVFE--DKVFWTDIIN 228 (266)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE----EE--CTTTTSSEEEEEEET--TEEEEEETTT
T ss_pred cccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEE----Ee--CCCcccccEEEEEEC--CEEEEEECCC
Confidence 4443 33567899999987776666 5568899999876543211 11 111123345666642 3444444456
Q ss_pred CcEEEEeCCc
Q 005352 509 SQVRILQGPN 518 (701)
Q Consensus 509 g~I~iwd~~~ 518 (701)
+.|...+..+
T Consensus 229 ~~I~~~~~~~ 238 (266)
T d1ijqa1 229 EAIFSANRLT 238 (266)
T ss_dssp TEEEEEETTT
T ss_pred CeEEEEECCC
Confidence 7777766543
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=90.97 E-value=4.3 Score=41.98 Aligned_cols=80 Identities=11% Similarity=0.033 Sum_probs=57.4
Q ss_pred CCcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcE--EEEEEeeCCC-e
Q 005352 374 DKTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIV--TAVCYRPDGQ-G 450 (701)
Q Consensus 374 dg~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i--~~i~~sp~g~-~ 450 (701)
.|.|.-+|+.+++.+..+....++..-.... .+.++++|+.||.++.+|..+++.+-.......+ .-+.|..+|+ +
T Consensus 465 ~G~l~AiD~~TG~i~W~~~~~~p~~~g~lst-agglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qY 543 (582)
T d1flga_ 465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLAT-AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQY 543 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESSCCCSCCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred CCeEEEEcCCCCcEEeecCCCCCCccceeEE-cCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEE
Confidence 3678999999999998887444444323334 6778888999999999999999999555444332 2267778885 4
Q ss_pred EEEE
Q 005352 451 GIVG 454 (701)
Q Consensus 451 l~~g 454 (701)
+++.
T Consensus 544 v~i~ 547 (582)
T d1flga_ 544 LGVT 547 (582)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5443
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=90.66 E-value=7.3 Score=37.04 Aligned_cols=122 Identities=8% Similarity=0.057 Sum_probs=76.6
Q ss_pred CeEEEEE--eeCCCC-EEEEEEcCCcEEEEeCC---CC----cEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEEC
Q 005352 396 YVTCVHF--NPVDDN-YFISGSIDGKVRIWAVL---SC----HVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNV 465 (701)
Q Consensus 396 ~V~~l~f--~p~~~~-~l~sgs~dg~v~iwd~~---~~----~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~ 465 (701)
.+..+++ +|.++. +++....+|.+..|.+. .+ +.+..+.....+..|.+......|+++-.+.-+..|+.
T Consensus 129 ~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde~~~LyisEE~~Giw~~~a 208 (353)
T d1h6la_ 129 EVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDEYGSLYIAEEDEAIWKFSA 208 (353)
T ss_dssp SCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETTTTEEEEEETTTEEEEEES
T ss_pred cceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeCCCCcEEEecCccceEEEEe
Confidence 3556665 664454 45666678888888663 23 23455667788999999999999999988887777776
Q ss_pred CCCeeeeeeeEEeecccCCCCCCeeEEEEecC--CCCEEEEEE-CCCcEEEEeCCc
Q 005352 466 SDNHLELDAEICVHSKKKAPCKRITGFQFLPQ--DSSKVMVSC-ADSQVRILQGPN 518 (701)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~--~~~~l~~~s-~dg~I~iwd~~~ 518 (701)
..........+. ..........+.++++-.. ...+|++++ .+++..|||...
T Consensus 209 ~~~~~~~~~~i~-~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~ 263 (353)
T d1h6la_ 209 EPDGGSNGTVID-RADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQG 263 (353)
T ss_dssp STTSCSCCEEEE-ECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESST
T ss_pred ccCCCccceeee-cccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCC
Confidence 533221111111 1111224567888886542 233555554 488999999754
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=90.36 E-value=5.2 Score=39.75 Aligned_cols=112 Identities=13% Similarity=0.081 Sum_probs=65.1
Q ss_pred CCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEec---------CCCcEEEEEEeeC---CCeEEEEec-----
Q 005352 394 SNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVD---------IRQIVTAVCYRPD---GQGGIVGSM----- 456 (701)
Q Consensus 394 ~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~---------~~~~i~~i~~sp~---g~~l~~gs~----- 456 (701)
-...++|+|.| ++++|++--..|.|++++..++....... .......|+++|+ ..++.+...
T Consensus 26 L~~P~~la~~p-dg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~ 104 (450)
T d1crua_ 26 LNKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK 104 (450)
T ss_dssp CSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred CCCceEEEEeC-CCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCC
Confidence 35678999999 99888876557999999988876553332 2345789999994 345544321
Q ss_pred --C----C--cEEEEECCCCeeeeeee-EEeecccCCCCCCeeEEEEecCCCCEEEEEEC
Q 005352 457 --M----G--DCRFYNVSDNHLELDAE-ICVHSKKKAPCKRITGFQFLPQDSSKVMVSCA 507 (701)
Q Consensus 457 --d----g--~v~i~d~~~~~~~~~~~-~~~~~~~~~~~~~i~~l~~~p~~~~~l~~~s~ 507 (701)
+ . .+..+............ ..+........+....|.|.| ++.++++.+.
T Consensus 105 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgp-DG~LYvs~Gd 163 (450)
T d1crua_ 105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGP-DQKIYYTIGD 163 (450)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECT-TSCEEEEECC
T ss_pred CcccccccceEEEeeecccccccccceEEEeecccccccccccceeEcC-CCCEEEEecC
Confidence 0 1 13334433332222111 111222223335567899999 5666666553
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=90.08 E-value=2.8 Score=40.19 Aligned_cols=151 Identities=11% Similarity=0.153 Sum_probs=87.0
Q ss_pred CCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcEEEEEEee----CC--CeEEEEec--C--CcEEEEECCCCeeeeeee
Q 005352 406 DDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIVTAVCYRP----DG--QGGIVGSM--M--GDCRFYNVSDNHLELDAE 475 (701)
Q Consensus 406 ~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i~~i~~sp----~g--~~l~~gs~--d--g~v~i~d~~~~~~~~~~~ 475 (701)
...+++.....+-|++||+. ++.+.... .+.++.|..-. ++ .-+++++. + ..|.+|.+......+..
T Consensus 39 ~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~-~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~- 115 (353)
T d1h6la_ 39 QNSKLITTNKKSGLAVYSLE-GKMLHSYH-TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS- 115 (353)
T ss_dssp GGCEEEEEETTSCCEEEETT-CCEEEECC-SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEE-
T ss_pred CccEEEEEcCcCCEEEEcCC-CcEEEecc-cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccccc-
Confidence 45677777777779999996 66665543 35666665542 22 23555553 2 35778877533221110
Q ss_pred EEee-cccCCCCCCeeEEEE--ecCCCC-EEEEEECCCcEEEEeCC---ccc---eeeecccCCCCeEEEEEecCCCEEE
Q 005352 476 ICVH-SKKKAPCKRITGFQF--LPQDSS-KVMVSCADSQVRILQGP---NVI---GKYKGLRRSGNQLSACFTSDGKHIV 545 (701)
Q Consensus 476 ~~~~-~~~~~~~~~i~~l~~--~p~~~~-~l~~~s~dg~I~iwd~~---~~~---~~~~~~~~~~~v~~l~~s~dg~~l~ 545 (701)
+... .........+.++++ .+.++. ++++...+|.+..|.+. +.. ...........+-.|.+......|+
T Consensus 116 ~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde~~~Ly 195 (353)
T d1h6la_ 116 ITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDEYGSLY 195 (353)
T ss_dssp CSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETTTTEEE
T ss_pred ccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeCCCCcEE
Confidence 0000 000111234667776 554454 56667778998888653 111 1122233456788999999999999
Q ss_pred EEeCCCcEEEEeCC
Q 005352 546 SAGEDSNVYMWNCI 559 (701)
Q Consensus 546 sgs~Dg~I~iWd~~ 559 (701)
.+-++.-|+.++.+
T Consensus 196 isEE~~Giw~~~a~ 209 (353)
T d1h6la_ 196 IAEEDEAIWKFSAE 209 (353)
T ss_dssp EEETTTEEEEEESS
T ss_pred EecCccceEEEEec
Confidence 99888766555544
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=88.33 E-value=2.3 Score=44.31 Aligned_cols=79 Identities=9% Similarity=0.002 Sum_probs=55.8
Q ss_pred CcEEEEECCCCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEecCCCcE--EEEEEeeCCC-eE
Q 005352 375 KTVRLWRVGNDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWVDIRQIV--TAVCYRPDGQ-GG 451 (701)
Q Consensus 375 g~I~iWd~~~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~i--~~i~~sp~g~-~l 451 (701)
|.|.-||+.+++.+....+..++..-.... .+.+++.|+.||.++.+|..+++.+-.......+ .-+.|..+|+ ++
T Consensus 453 G~l~A~D~~TG~~~W~~~~~~~~~gg~lsT-agglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQYv 531 (596)
T d1w6sa_ 453 GQIKAYNAITGDYKWEKMERFAVWGGTMAT-AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYV 531 (596)
T ss_dssp EEEEEECTTTCCEEEEEEESSCCCSBCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred ceEEEEeCCCCceecccCCCCCCccceeEe-cCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeEEEECCEEEE
Confidence 679999999999988776554444333344 6778888999999999999999999555443322 2255666875 44
Q ss_pred EEE
Q 005352 452 IVG 454 (701)
Q Consensus 452 ~~g 454 (701)
++.
T Consensus 532 av~ 534 (596)
T d1w6sa_ 532 AIY 534 (596)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=86.52 E-value=5.4 Score=41.16 Aligned_cols=59 Identities=15% Similarity=0.038 Sum_probs=42.8
Q ss_pred CcEEEEeCCCCcEEEEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeee
Q 005352 417 GKVRIWAVLSCHVVDWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAE 475 (701)
Q Consensus 417 g~v~iwd~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~ 475 (701)
|.|.-+|+.+++++-......++..-.++..+..+++|+.||.++.||.++++.+....
T Consensus 466 G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~ 524 (582)
T d1flga_ 466 GSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQ 524 (582)
T ss_dssp EEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CeEEEEcCCCCcEEeecCCCCCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEE
Confidence 56777888888877444434444333344567788899999999999999999876544
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=84.34 E-value=3.2 Score=41.43 Aligned_cols=62 Identities=16% Similarity=0.152 Sum_probs=40.9
Q ss_pred CCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeeeEEeecccCCCCCCeeEEEEecC
Q 005352 436 RQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAEICVHSKKKAPCKRITGFQFLPQ 497 (701)
Q Consensus 436 ~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~p~ 497 (701)
-...++|+|.|+|+.+++--..|.|++++..++.......+..............+|+++|+
T Consensus 26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd 87 (450)
T d1crua_ 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD 87 (450)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence 45688999999998877665579999998877654432221111111223456789999984
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.17 E-value=19 Score=34.45 Aligned_cols=95 Identities=7% Similarity=0.019 Sum_probs=61.2
Q ss_pred CeEEEEEecCCeEEEEECCCcEEEEECCCCeeeeeec-CCCCeEEEEEeeCCCCEEEEEEcCCcEEEEeCCCCcEEEEe-
Q 005352 356 EILDLSWSKNNYLLSASIDKTVRLWRVGNDHCLRVFP-HSNYVTCVHFNPVDDNYFISGSIDGKVRIWAVLSCHVVDWV- 433 (701)
Q Consensus 356 ~I~~l~~s~~~~l~s~s~dg~I~iWd~~~~~~~~~~~-h~~~V~~l~f~p~~~~~l~sgs~dg~v~iwd~~~~~~~~~~- 433 (701)
.|..++|+.+ .|+.. .++.+..++...-....... ...++..+.++| ..++....++.+.++++..++.....
T Consensus 88 ~v~~vafs~d-~l~v~-~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p---~~~~l~~~~~~~~~~~l~~~~~~~~~~ 162 (381)
T d1xipa_ 88 DVIFVCFHGD-QVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVN---NTLVILNSVNDLSALDLRTKSTKQLAQ 162 (381)
T ss_dssp TEEEEEEETT-EEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred CeEEEEeeCC-EEEEE-eCCCEEEEEeeccccccccccccccccceecCC---ceeEEEecCCCEEEEEeccCccccccC
Confidence 5788898755 33333 45567778776643333322 456678888766 46777778999999999887644321
Q ss_pred -----cCCCcEEEEEEeeCCCeEEEEe
Q 005352 434 -----DIRQIVTAVCYRPDGQGGIVGS 455 (701)
Q Consensus 434 -----~~~~~i~~i~~sp~g~~l~~gs 455 (701)
.-.+.+.+++|++.|..++++.
T Consensus 163 ~v~~~~~~~~~~~v~ws~kgkq~v~~~ 189 (381)
T d1xipa_ 163 NVTSFDVTNSQLAVLLKDRSFQSFAWR 189 (381)
T ss_dssp SEEEEEECSSEEEEEETTSCEEEEEEE
T ss_pred CcceEEecCCceEEEEeCCcEEEEEeC
Confidence 2245577777777776666653
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.82 E-value=23 Score=33.79 Aligned_cols=179 Identities=8% Similarity=-0.053 Sum_probs=97.6
Q ss_pred cCeEEEEEecCC-eEEEEECCCcEEEEECC-----------CCeeeeeecCCCCeEEEEEeeCCCCEEEEEEcCCcEEEE
Q 005352 355 GEILDLSWSKNN-YLLSASIDKTVRLWRVG-----------NDHCLRVFPHSNYVTCVHFNPVDDNYFISGSIDGKVRIW 422 (701)
Q Consensus 355 ~~I~~l~~s~~~-~l~s~s~dg~I~iWd~~-----------~~~~~~~~~h~~~V~~l~f~p~~~~~l~sgs~dg~v~iw 422 (701)
....-+++++.. ++++|+.++ ++|-.+. ........ .-..|..++|+- +.|+.. .++.+..+
T Consensus 37 ~~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~-~ip~v~~vafs~---d~l~v~-~~~~l~~~ 110 (381)
T d1xipa_ 37 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIPDVIFVCFHG---DQVLVS-TRNALYSL 110 (381)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECTTEEEEEEET---TEEEEE-ESSEEEEE
T ss_pred cccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceecc-CCCCeEEEEeeC---CEEEEE-eCCCEEEE
Confidence 345567888765 888888775 5666531 11111111 123588899964 345554 45678888
Q ss_pred eCCCCcEE-EEecCCCcEEEEEEeeCCCeEEEEecCCcEEEEECCCCeeeeeee-EEeecccCCCCCCeeEEEEecCCCC
Q 005352 423 AVLSCHVV-DWVDIRQIVTAVCYRPDGQGGIVGSMMGDCRFYNVSDNHLELDAE-ICVHSKKKAPCKRITGFQFLPQDSS 500 (701)
Q Consensus 423 d~~~~~~~-~~~~~~~~i~~i~~sp~g~~l~~gs~dg~v~i~d~~~~~~~~~~~-~~~~~~~~~~~~~i~~l~~~p~~~~ 500 (701)
+...-... .......++..+.+.|. .+++...+|.+.++++...+...... ..... -.....++.|++ .+.
T Consensus 111 ~~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~----~~~~~~~v~ws~-kgk 183 (381)
T d1xipa_ 111 DLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFD----VTNSQLAVLLKD-RSF 183 (381)
T ss_dssp ESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEE----ECSSEEEEEETT-SCE
T ss_pred EeeccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccCCcceEE----ecCCceEEEEeC-CcE
Confidence 87664332 33344567778877764 67777788999999998875422110 00000 114467777776 555
Q ss_pred EEEEEECCCcEEEE-eCCccceeeecccCCCCeEEEEEecCCCEEEEE
Q 005352 501 KVMVSCADSQVRIL-QGPNVIGKYKGLRRSGNQLSACFTSDGKHIVSA 547 (701)
Q Consensus 501 ~l~~~s~dg~I~iw-d~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~sg 547 (701)
.++++..++ ..+- ++......-........|.++.|-.+..++++-
T Consensus 184 q~v~~~g~~-~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy 230 (381)
T d1xipa_ 184 QSFAWRNGE-MEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 230 (381)
T ss_dssp EEEEEETTE-EEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred EEEEeCCCc-eeeccCCCCccccCCCcCCCcceeEEEEecCceEEEEE
Confidence 555553322 2111 111111000001134568889998777766654
|